Query 038747
Match_columns 401
No_of_seqs 246 out of 1852
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 02:53:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038747.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038747hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01640 F_box_assoc_1 F-box 100.0 1.9E-34 4.1E-39 258.0 26.6 216 105-332 1-230 (230)
2 PF07734 FBA_1: F-box associat 99.7 2.7E-15 5.8E-20 126.5 17.5 141 214-357 1-164 (164)
3 PF08268 FBA_3: F-box associat 99.6 3.7E-14 8E-19 114.6 14.1 104 214-318 1-118 (129)
4 PLN03215 ascorbic acid mannose 99.5 5.2E-11 1.1E-15 110.8 25.6 297 8-340 2-356 (373)
5 PF12937 F-box-like: F-box-lik 98.9 9.7E-10 2.1E-14 71.7 3.0 42 10-51 1-42 (47)
6 PF00646 F-box: F-box domain; 98.7 3.1E-09 6.8E-14 69.7 1.4 44 10-53 3-46 (48)
7 smart00256 FBOX A Receptor for 98.7 6.5E-09 1.4E-13 65.6 2.5 39 13-51 1-39 (41)
8 PHA02713 hypothetical protein; 98.7 9.3E-07 2E-11 89.1 18.7 196 119-340 321-543 (557)
9 KOG4441 Proteins containing BT 98.6 2.8E-06 6.1E-11 85.5 18.8 209 105-340 328-556 (571)
10 PHA02713 hypothetical protein; 98.6 9.1E-06 2E-10 82.0 21.6 197 119-340 273-499 (557)
11 PLN02153 epithiospecifier prot 98.6 8.8E-06 1.9E-10 77.2 19.3 208 119-340 51-294 (341)
12 PHA03098 kelch-like protein; P 98.5 8.8E-06 1.9E-10 82.1 19.9 196 119-340 312-521 (534)
13 PLN02193 nitrile-specifier pro 98.5 1.8E-05 4E-10 78.3 21.3 206 119-340 194-420 (470)
14 KOG4441 Proteins containing BT 98.4 4.3E-05 9.2E-10 77.0 20.4 197 119-340 302-509 (571)
15 PHA02790 Kelch-like protein; P 98.4 3.9E-05 8.5E-10 76.1 19.9 184 119-338 288-478 (480)
16 TIGR03548 mutarot_permut cycli 98.4 6.1E-05 1.3E-09 70.9 19.9 154 181-340 87-289 (323)
17 TIGR03547 muta_rot_YjhT mutatr 98.2 0.00074 1.6E-08 64.2 22.7 206 118-340 29-308 (346)
18 PRK14131 N-acetylneuraminic ac 98.1 0.00055 1.2E-08 65.8 20.6 241 106-364 35-352 (376)
19 PHA03098 kelch-like protein; P 98.1 0.00036 7.8E-09 70.5 19.4 218 119-364 265-496 (534)
20 PLN02193 nitrile-specifier pro 98.0 0.0021 4.6E-08 63.7 23.5 156 182-340 193-361 (470)
21 PHA02790 Kelch-like protein; P 97.9 0.00081 1.8E-08 66.8 18.8 168 181-364 286-455 (480)
22 PLN02153 epithiospecifier prot 97.9 0.0036 7.8E-08 59.4 22.4 155 182-340 50-235 (341)
23 PRK14131 N-acetylneuraminic ac 97.7 0.0055 1.2E-07 58.9 18.8 148 182-335 189-373 (376)
24 TIGR03548 mutarot_permut cycli 97.6 0.0044 9.6E-08 58.3 16.9 110 119-250 89-202 (323)
25 KOG2120 SCF ubiquitin ligase, 97.4 8.6E-05 1.9E-09 66.4 2.6 41 9-49 97-137 (419)
26 KOG4693 Uncharacterized conser 97.4 0.006 1.3E-07 53.7 13.8 210 119-340 45-286 (392)
27 KOG0281 Beta-TrCP (transducin 97.4 0.0054 1.2E-07 55.8 13.5 42 11-52 76-121 (499)
28 KOG4693 Uncharacterized conser 97.4 0.0028 6.1E-08 55.7 11.3 138 181-320 156-310 (392)
29 KOG1230 Protein containing rep 97.2 0.0083 1.8E-07 56.0 13.3 155 183-340 155-350 (521)
30 TIGR03547 muta_rot_YjhT mutatr 96.9 0.051 1.1E-06 51.6 16.0 154 182-340 29-237 (346)
31 KOG0379 Kelch repeat-containin 96.4 0.34 7.4E-06 48.2 18.7 180 183-364 89-284 (482)
32 KOG0379 Kelch repeat-containin 96.3 0.3 6.6E-06 48.6 17.2 206 119-340 89-311 (482)
33 KOG2997 F-box protein FBX9 [Ge 95.5 0.0074 1.6E-07 54.5 2.1 45 10-54 107-156 (366)
34 PF02191 OLF: Olfactomedin-lik 94.7 1.8 4E-05 38.9 14.9 121 210-340 70-213 (250)
35 PF13964 Kelch_6: Kelch motif 94.1 0.17 3.6E-06 32.9 5.1 39 212-250 5-44 (50)
36 KOG1230 Protein containing rep 93.7 1.4 3E-05 41.7 12.1 147 183-332 99-277 (521)
37 PF13360 PQQ_2: PQQ-like domai 93.5 4.9 0.00011 35.3 15.4 188 108-337 35-237 (238)
38 smart00284 OLF Olfactomedin-li 92.3 6.5 0.00014 35.3 13.9 120 211-340 76-218 (255)
39 COG4257 Vgb Streptogramin lyas 91.6 10 0.00022 34.3 14.0 221 106-340 69-315 (353)
40 KOG4341 F-box protein containi 91.1 0.13 2.9E-06 48.6 2.1 42 6-47 68-109 (483)
41 PF01344 Kelch_1: Kelch motif; 90.7 0.96 2.1E-05 28.6 5.4 39 212-250 5-44 (47)
42 TIGR01640 F_box_assoc_1 F-box 90.2 9.5 0.00021 33.6 13.3 117 216-340 3-137 (230)
43 PF07646 Kelch_2: Kelch motif; 87.8 1.8 3.9E-05 27.7 5.1 39 213-251 6-47 (49)
44 KOG4152 Host cell transcriptio 87.7 25 0.00053 34.7 14.3 203 119-340 58-312 (830)
45 PF13964 Kelch_6: Kelch motif 86.7 1.1 2.4E-05 28.8 3.6 21 118-138 28-48 (50)
46 PF07762 DUF1618: Protein of u 84.1 7.2 0.00016 31.1 8.0 65 235-299 7-98 (131)
47 COG2706 3-carboxymuconate cycl 83.0 41 0.00089 31.5 13.0 105 233-340 166-286 (346)
48 PF13360 PQQ_2: PQQ-like domai 82.0 34 0.00074 29.8 15.2 110 214-337 32-147 (238)
49 PRK11138 outer membrane biogen 82.0 38 0.00083 32.6 13.6 108 213-337 64-185 (394)
50 PF07250 Glyoxal_oxid_N: Glyox 81.1 34 0.00073 30.6 11.6 169 181-363 45-226 (243)
51 COG3055 Uncharacterized protei 81.1 37 0.0008 31.9 11.9 173 182-364 113-358 (381)
52 PF07893 DUF1668: Protein of u 80.9 38 0.00082 32.1 12.7 127 111-255 79-223 (342)
53 smart00564 PQQ beta-propeller 79.2 6.7 0.00015 22.3 4.6 26 311-336 5-30 (33)
54 smart00612 Kelch Kelch domain. 78.7 4.2 9.1E-05 25.2 3.9 19 181-199 14-32 (47)
55 KOG0274 Cdc4 and related F-box 78.6 0.75 1.6E-05 46.2 0.4 44 8-51 106-149 (537)
56 PF10282 Lactonase: Lactonase, 77.8 64 0.0014 30.5 14.2 116 218-340 154-287 (345)
57 PF01011 PQQ: PQQ enzyme repea 76.4 5.5 0.00012 23.9 3.7 28 313-340 1-28 (38)
58 PLN02772 guanylate kinase 72.6 24 0.00052 33.9 8.7 75 212-288 28-107 (398)
59 PRK11138 outer membrane biogen 72.3 95 0.0021 29.9 14.2 106 212-336 250-359 (394)
60 COG4257 Vgb Streptogramin lyas 71.7 47 0.001 30.2 9.6 126 102-257 192-320 (353)
61 PF13418 Kelch_4: Galactose ox 71.4 8.4 0.00018 24.4 3.9 37 213-249 6-44 (49)
62 PF02897 Peptidase_S9_N: Proly 70.8 1E+02 0.0023 29.7 18.8 119 216-339 285-413 (414)
63 KOG3545 Olfactomedin and relat 69.2 75 0.0016 28.3 10.3 120 211-340 70-212 (249)
64 KOG0310 Conserved WD40 repeat- 68.2 1.2E+02 0.0027 29.6 13.4 181 124-340 8-194 (487)
65 PF08450 SGL: SMP-30/Gluconola 67.6 88 0.0019 27.6 14.6 110 214-338 5-130 (246)
66 PF13418 Kelch_4: Galactose ox 66.5 3.8 8.3E-05 26.1 1.5 19 119-137 30-48 (49)
67 PF10282 Lactonase: Lactonase, 66.0 1.2E+02 0.0026 28.6 19.4 149 181-339 165-333 (345)
68 PF03088 Str_synth: Strictosid 65.9 12 0.00026 27.6 4.2 19 321-339 36-54 (89)
69 KOG2055 WD40 repeat protein [G 65.9 1.4E+02 0.003 29.2 12.7 102 234-339 280-383 (514)
70 PF13415 Kelch_3: Galactose ox 63.9 18 0.00038 23.0 4.3 17 233-249 18-34 (49)
71 TIGR03075 PQQ_enz_alc_DH PQQ-d 62.0 1.8E+02 0.004 29.4 13.4 112 212-337 63-196 (527)
72 COG4946 Uncharacterized protei 61.3 1.6E+02 0.0034 29.0 11.5 143 183-341 288-442 (668)
73 TIGR03074 PQQ_membr_DH membran 61.0 1.9E+02 0.0042 30.7 13.4 32 211-248 187-220 (764)
74 PF08450 SGL: SMP-30/Gluconola 61.0 1.2E+02 0.0026 26.8 19.0 198 106-340 8-223 (246)
75 cd01207 Ena-Vasp Enabled-VASP- 60.5 28 0.00061 26.9 5.4 42 119-168 10-51 (111)
76 PF13570 PQQ_3: PQQ-like domai 60.0 15 0.00032 22.2 3.2 26 212-243 15-40 (40)
77 TIGR02658 TTQ_MADH_Hv methylam 58.9 1.7E+02 0.0036 27.9 12.7 114 217-337 204-338 (352)
78 TIGR03300 assembly_YfgL outer 58.1 1.7E+02 0.0037 27.7 15.5 106 212-336 235-344 (377)
79 KOG2502 Tub family proteins [G 57.0 7.4 0.00016 36.2 2.0 39 8-46 43-89 (355)
80 TIGR03300 assembly_YfgL outer 56.6 1.8E+02 0.0039 27.6 13.0 109 213-336 100-214 (377)
81 COG1520 FOG: WD40-like repeat 55.5 1.9E+02 0.0041 27.5 14.9 138 181-337 34-178 (370)
82 COG3386 Gluconolactonase [Carb 54.9 1.8E+02 0.0039 27.1 11.8 107 219-337 37-158 (307)
83 cd01206 Homer Homer type EVH1 49.9 64 0.0014 24.8 5.7 40 118-168 11-51 (111)
84 PF07893 DUF1668: Protein of u 49.7 2.3E+02 0.005 26.8 12.4 55 183-244 200-254 (342)
85 PF08268 FBA_3: F-box associat 49.5 73 0.0016 25.1 6.6 54 311-364 4-63 (129)
86 KOG1963 WD40 repeat protein [G 47.3 1.6E+02 0.0035 30.9 9.8 98 235-335 433-544 (792)
87 PF15525 DUF4652: Domain of un 45.3 1.5E+02 0.0033 25.3 7.7 60 279-339 86-157 (200)
88 KOG0294 WD40 repeat-containing 42.1 2.9E+02 0.0063 25.7 10.7 110 213-334 47-161 (362)
89 PF13013 F-box-like_2: F-box-l 41.8 26 0.00056 27.0 2.6 29 10-38 22-50 (109)
90 KOG0289 mRNA splicing factor [ 41.6 3.4E+02 0.0075 26.4 12.4 128 180-322 367-497 (506)
91 KOG0291 WD40-repeat-containing 40.3 3.8E+02 0.0083 28.2 11.0 80 213-294 250-345 (893)
92 KOG0295 WD40 repeat-containing 36.9 2.2E+02 0.0048 27.0 8.1 57 276-334 311-368 (406)
93 KOG0279 G protein beta subunit 35.4 1.6E+02 0.0034 26.9 6.8 65 264-334 201-266 (315)
94 PF09372 PRANC: PRANC domain; 35.1 33 0.00072 25.6 2.3 25 8-32 70-94 (97)
95 PF12768 Rax2: Cortical protei 34.0 1.1E+02 0.0024 28.0 5.9 67 180-251 14-81 (281)
96 cd00216 PQQ_DH Dehydrogenases 34.0 4.9E+02 0.011 25.9 11.9 31 212-248 55-87 (488)
97 KOG2106 Uncharacterized conser 33.8 5E+02 0.011 26.0 20.8 70 276-356 387-457 (626)
98 PF05096 Glu_cyclase_2: Glutam 29.8 4.3E+02 0.0093 24.0 12.0 139 179-337 65-210 (264)
99 KOG0316 Conserved WD40 repeat- 28.9 4.3E+02 0.0092 23.7 14.2 181 108-334 27-217 (307)
100 PF15408 PH_7: Pleckstrin homo 28.8 23 0.0005 25.7 0.5 23 28-50 77-99 (104)
101 PF08683 CAMSAP_CKK: Microtubu 28.4 1.4E+02 0.003 23.6 4.7 56 107-165 47-106 (123)
102 PF00400 WD40: WD domain, G-be 27.7 1.3E+02 0.0028 17.3 5.3 38 291-328 1-39 (39)
103 PF08350 DUF1724: Domain of un 26.7 58 0.0012 22.3 2.1 27 372-398 10-36 (64)
104 KOG0289 mRNA splicing factor [ 26.5 2.3E+02 0.005 27.6 6.6 63 276-340 366-430 (506)
105 PLN00181 protein SPA1-RELATED; 26.1 8.3E+02 0.018 26.1 20.9 97 234-333 640-741 (793)
106 KOG0649 WD40 repeat protein [G 25.7 2.8E+02 0.006 24.9 6.5 84 251-337 56-151 (325)
107 cd00837 EVH1 EVH1 (Enabled, Va 25.0 2.7E+02 0.0058 21.0 5.8 41 118-169 9-49 (104)
108 KOG1310 WD40 repeat protein [G 24.9 5.2E+02 0.011 26.2 8.8 113 107-243 59-179 (758)
109 KOG1912 WD40 repeat protein [G 23.1 9.4E+02 0.02 25.7 11.4 26 106-131 123-148 (1062)
110 KOG4152 Host cell transcriptio 20.7 8.8E+02 0.019 24.4 10.6 68 181-251 229-311 (830)
111 KOG0321 WD40 repeat-containing 20.0 4.3E+02 0.0093 27.2 7.3 98 235-334 75-179 (720)
No 1
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=100.00 E-value=1.9e-34 Score=257.98 Aligned_cols=216 Identities=22% Similarity=0.403 Sum_probs=161.8
Q ss_pred eccccceEEEeeCCceEEEccccccccccCCCCCCCCCcceeeeeeEEEEEeCCCCCeEEEEEEEEeccccCCCCCcceE
Q 038747 105 LGPYDGIFCLCDDSLIFLWNPATKECRTLPNYSNFLPTCATFLYENAIFGLDHTSGDYKVVFICELWNEQIEAPYEHSLV 184 (401)
Q Consensus 105 ~~s~~GLl~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~ 184 (401)
++|||||||+.....++||||+||+++.||+++.... ......++||||+.+++||||++...... .....+
T Consensus 1 ~~sCnGLlc~~~~~~~~V~NP~T~~~~~LP~~~~~~~---~~~~~~~~~G~d~~~~~YKVv~~~~~~~~-----~~~~~~ 72 (230)
T TIGR01640 1 VVPCDGLICFSYGKRLVVWNPSTGQSRWLPTPKSRRS---NKESDTYFLGYDPIEKQYKVLCFSDRSGN-----RNQSEH 72 (230)
T ss_pred CcccceEEEEecCCcEEEECCCCCCEEecCCCCCccc---ccccceEEEeecccCCcEEEEEEEeecCC-----CCCccE
Confidence 4799999999988899999999999999998754211 11122689999999999999999753211 135689
Q ss_pred EEEEcCCCCccccCCCCcccceeeeCCCceeEECceEEEEEeecCCCCccEEEEEEcCCceEe-EecCCCCCCCC--Cce
Q 038747 185 AIYTSTTDSWRVSKGNVEWIPYDFKSHFKSTNLNGVFYWLVSRDDGDHSNIMLSFHISDEEFR-EIERPRIPYSS--HES 261 (401)
Q Consensus 185 ~vyss~t~~W~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~Il~fD~~~e~~~-~i~lP~~~~~~--~~~ 261 (401)
+||++++++||.+...+ +..... ..+|++||++||++....+.....|++||+++|+|+ .+++|...... ...
T Consensus 73 ~Vys~~~~~Wr~~~~~~---~~~~~~-~~~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P~~~~~~~~~~~ 148 (230)
T TIGR01640 73 QVYTLGSNSWRTIECSP---PHHPLK-SRGVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSDSVDYLS 148 (230)
T ss_pred EEEEeCCCCccccccCC---CCcccc-CCeEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecCccccccccceE
Confidence 99999999999987421 221122 249999999999997652222238999999999999 58998754321 234
Q ss_pred eEEEcCeEEEEeecCCCCeEEEEEEcC---CcEEEEEEEcC--CCCc---ccceEEeeCCEEEEEeeC--Ce-EEEEECC
Q 038747 262 LGLFNNSVSLLHFDKSSHYIDIWLMSD---MNWIQQFAIGP--FLGV---MSPRGIWKNNAVLMESDN--GT-LLLYDLI 330 (401)
Q Consensus 262 l~~~~g~L~~~~~~~~~~~l~IW~l~~---~~W~~~~~i~~--~~~~---~~p~~~~~~~~il~~~~~--~~-l~~yd~~ 330 (401)
|++++|+||++........++||+|++ ..|+|+++|+. ...+ ..|+++..+|+|++.... +. ++.||++
T Consensus 149 L~~~~G~L~~v~~~~~~~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~~~~~~~~y~~~ 228 (230)
T TIGR01640 149 LINYKGKLAVLKQKKDTNNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDENPFYIFYYNVG 228 (230)
T ss_pred EEEECCEEEEEEecCCCCcEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCCCceEEEEEecc
Confidence 999999999776433345699999997 57999999973 2222 347888899999997664 34 9999998
Q ss_pred CC
Q 038747 331 VE 332 (401)
Q Consensus 331 t~ 332 (401)
++
T Consensus 229 ~~ 230 (230)
T TIGR01640 229 EN 230 (230)
T ss_pred CC
Confidence 75
No 2
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=99.68 E-value=2.7e-15 Score=126.54 Aligned_cols=141 Identities=21% Similarity=0.299 Sum_probs=97.2
Q ss_pred eeEECceEEEEEeecCCCCccEEEEEEcCCceE-eEecCCCCCCCCC--ceeE-EEcCeEEEEeecCCCCeEEEEEEcC-
Q 038747 214 STNLNGVFYWLVSRDDGDHSNIMLSFHISDEEF-REIERPRIPYSSH--ESLG-LFNNSVSLLHFDKSSHYIDIWLMSD- 288 (401)
Q Consensus 214 ~v~~~G~lywl~~~~~~~~~~~Il~fD~~~e~~-~~i~lP~~~~~~~--~~l~-~~~g~L~~~~~~~~~~~l~IW~l~~- 288 (401)
+|++||++||++..........|++||+++|+| ..+++|....... ..|. +.+|+||++........++||+|++
T Consensus 1 gV~vnG~~hW~~~~~~~~~~~~IlsFDl~~E~F~~~~~lP~~~~~~~~~~~L~~v~~~~L~~~~~~~~~~~~~IWvm~~~ 80 (164)
T PF07734_consen 1 GVFVNGALHWLAYDENNDEKDFILSFDLSTEKFGRSLPLPFCNDDDDDSVSLSVVRGDCLCVLYQCDETSKIEIWVMKKY 80 (164)
T ss_pred CEEECCEEEeeEEecCCCCceEEEEEeccccccCCEECCCCccCccCCEEEEEEecCCEEEEEEeccCCccEEEEEEeee
Confidence 589999999999887333223899999999999 8899998766222 2264 4478999776445556799999995
Q ss_pred ----CcEEEEEEEcCCCC--cc-----cceEEeeCCEEEEEee-C------CeEEEEECCCCcEEEEeeccCCCCCceEE
Q 038747 289 ----MNWIQQFAIGPFLG--VM-----SPRGIWKNNAVLMESD-N------GTLLLYDLIVEEVRDLGRFTRGTLGTAIL 350 (401)
Q Consensus 289 ----~~W~~~~~i~~~~~--~~-----~p~~~~~~~~il~~~~-~------~~l~~yd~~t~~~~~v~~~~~~~~~~~~~ 350 (401)
.+|+|.++|+.... .. ..+.+.+++++++... . ..++.|+ +++.++++.+. .....++.
T Consensus 81 ~~~~~SWtK~~~i~~~~~~~~~~~~~~~~~~i~~~~~vlv~~~~~~~~~~~~~i~i~g-~~~~~~~~~~~--~~~~~~~~ 157 (164)
T PF07734_consen 81 GYGKESWTKLFTIDLPPLPSLFFHFRNPSFFIDEEKKVLVCCDKETQREEKNKIYIVG-EDGKFIEVDIE--DKSSCWPS 157 (164)
T ss_pred ccCcceEEEEEEEecCCCCCcccccccceEEEeCCCeEEEEEcCCCCccceeEEEEEc-CCCEEEEcccc--cCCCCCCC
Confidence 68999999984321 11 1233444556655422 1 3477777 77778888774 22222678
Q ss_pred EEEEecc
Q 038747 351 TYCYKES 357 (401)
Q Consensus 351 ~~~y~es 357 (401)
++.|+||
T Consensus 158 ~~~YvpS 164 (164)
T PF07734_consen 158 ICNYVPS 164 (164)
T ss_pred EEEECCC
Confidence 8899987
No 3
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=99.59 E-value=3.7e-14 Score=114.61 Aligned_cols=104 Identities=24% Similarity=0.536 Sum_probs=77.7
Q ss_pred eeEECceEEEEEeecCCCCccEEEEEEcCCceEeEecCC--CCCCCCCceeEEEcCeEEEEeecCC--CCeEEEEEEcC-
Q 038747 214 STNLNGVFYWLVSRDDGDHSNIMLSFHISDEEFREIERP--RIPYSSHESLGLFNNSVSLLHFDKS--SHYIDIWLMSD- 288 (401)
Q Consensus 214 ~v~~~G~lywl~~~~~~~~~~~Il~fD~~~e~~~~i~lP--~~~~~~~~~l~~~~g~L~~~~~~~~--~~~l~IW~l~~- 288 (401)
++++||++||++... ......|++||+++|+|+.|++| .........|.+++|+||++..... ...++||+|+|
T Consensus 1 gicinGvly~~a~~~-~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~ 79 (129)
T PF08268_consen 1 GICINGVLYWLAWSE-DSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDY 79 (129)
T ss_pred CEEECcEEEeEEEEC-CCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeecc
Confidence 589999999999873 33457999999999999999999 2222233459999999997653222 35799999998
Q ss_pred --CcEEEEEEEcCCC-------CcccceEEeeCCEEEEE
Q 038747 289 --MNWIQQFAIGPFL-------GVMSPRGIWKNNAVLME 318 (401)
Q Consensus 289 --~~W~~~~~i~~~~-------~~~~p~~~~~~~~il~~ 318 (401)
++|+|.+.+-|.. ....++++.++|+|++.
T Consensus 80 ~k~~Wsk~~~~lp~~~~~~~~~~~~~~~g~~~~Geiv~~ 118 (129)
T PF08268_consen 80 EKQEWSKKHIVLPPSWQHFVHDCDFSFVGVTDTGEIVFA 118 (129)
T ss_pred ccceEEEEEEECChHHhcccCCcEEEEEEEcCCCEEEEE
Confidence 7899987755432 12455666677777776
No 4
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=99.46 E-value=5.2e-11 Score=110.80 Aligned_cols=297 Identities=15% Similarity=0.127 Sum_probs=149.9
Q ss_pred CccCCCCHHHHHHHHhcCC-hhhhhhhhccchhhhcccCChhhHHhhhhcCCCCCeEEEEEeeeecCCCCCCcccc----
Q 038747 8 DSSMLMPEDVRLEILSRLP-VKSLMRLRCVCKSWYALIENPKFISKHLENFNDDNAYLIISYQVYDDAGHDNLTCL---- 82 (401)
Q Consensus 8 ~~~~~LP~Dll~~IL~rLP-~~sl~r~r~VcK~W~~li~~~~F~~~~~~~~~~~p~ll~~~~~~~~~~~~~~~~~~---- 82 (401)
..|++||+||+..|..||| ..+++|||+|||+||+.+.... +. ...+++|+++.-...+. ..+...
T Consensus 2 ~~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~~~---~~-~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 72 (373)
T PLN03215 2 ADWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSGVG---KK-NPFRTRPLILFNPINPS-----ETLTDDRSYI 72 (373)
T ss_pred CChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccccc---cc-CCcccccccccCcccCC-----CCcccccccc
Confidence 5699999999999999998 5899999999999999876421 00 00111233331100000 001000
Q ss_pred -ccCCcccccccccCCCCcc--ceeeccccceEEEee-C---CceEEEccccccccccCCCCCCCCCccee--eeeeEEE
Q 038747 83 -FKDKTLADISYENIHRPIL--RTLLGPYDGIFCLCD-D---SLIFLWNPATKECRTLPNYSNFLPTCATF--LYENAIF 153 (401)
Q Consensus 83 -~~~~~~~~~~~~~~~~p~~--~~~~~s~~GLl~~~~-~---~~~~V~NP~T~~~~~LP~~~~~~~~~~~~--~~~~~~~ 153 (401)
.++..+. ..-+. ....++..|+|.-.+ + ..+.+.||+++....+|+-...... +.. ....+.+
T Consensus 73 ~~~~~~ls-------~~~~~r~~~~~~~~~~WLik~~~~~~~~~~~Ll~PLsr~~~~~~~~~lnll~-f~v~ei~~~y~l 144 (373)
T PLN03215 73 SRPGAFLS-------RAAFFRVTLSSSPSKGWLIKSDMDVNSGRFHLLNPLSRLPLRHSSESVDLLE-FTVSEIREAYQV 144 (373)
T ss_pred ccccceee-------eeEEEEeecCCCCCCCcEEEEeccccCCccEecCccccCccCCCCccceeee-eEEEEccceEEE
Confidence 0000000 00000 011246688887764 2 5889999999998888753321100 000 0000111
Q ss_pred -EEeCC---CCCeE-EEEEEEEeccccCCCCCcceEEEEEcC------CCCccccCCCCcccceeeeCCCceeEECceEE
Q 038747 154 -GLDHT---SGDYK-VVFICELWNEQIEAPYEHSLVAIYTST------TDSWRVSKGNVEWIPYDFKSHFKSTNLNGVFY 222 (401)
Q Consensus 154 -g~d~~---~~~yk-Vv~~~~~~~~~~~~~~~~~~~~vyss~------t~~W~~~~~~~~~~~~~~~~~~~~v~~~G~ly 222 (401)
+.+.. ...|+ ++.+.....+. .....+.|+..+ .++|+.++.. ... -..-++.+|.+|
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~vl~i~~~g~l~~w~~~~Wt~l~~~--~~~-----~~DIi~~kGkfY 213 (373)
T PLN03215 145 LDWAKRRETRPGYQRSALVKVKEGDN----HRDGVLGIGRDGKINYWDGNVLKALKQM--GYH-----FSDIIVHKGQTY 213 (373)
T ss_pred EecccccccccceeEEEEEEeecCCC----cceEEEEEeecCcEeeecCCeeeEccCC--Cce-----eeEEEEECCEEE
Confidence 10100 00131 11111100010 001122222211 3678877531 111 136799999999
Q ss_pred EEEeecCCCCccEEEEEEcCCceEeEecCCC--CCC----CCCceeEEEcCeEEEEeec--C-------------CCCeE
Q 038747 223 WLVSRDDGDHSNIMLSFHISDEEFREIERPR--IPY----SSHESLGLFNNSVSLLHFD--K-------------SSHYI 281 (401)
Q Consensus 223 wl~~~~~~~~~~~Il~fD~~~e~~~~i~lP~--~~~----~~~~~l~~~~g~L~~~~~~--~-------------~~~~l 281 (401)
-+...+ .+.++|.+-+ .+.+..+. ... .....|++..|.|.++... . ....+
T Consensus 214 AvD~~G------~l~~i~~~l~-i~~v~~~i~~~~~~g~~~~~~yLVEs~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f 286 (373)
T PLN03215 214 ALDSIG------IVYWINSDLE-FSRFGTSLDENITDGCWTGDRRFVECCGELYIVERLPKESTWKRKADGFEYSRTVGF 286 (373)
T ss_pred EEcCCC------eEEEEecCCc-eeeecceecccccCCcccCceeEEEECCEEEEEEEEccCcccccccccccccceeEE
Confidence 885444 6777774321 12221111 011 1123388999998865520 0 12468
Q ss_pred EEEEEcC--CcEEEEEEEcCCCCc---ccceEEe-------eCCEEEEEeeCCeEEEEECCCCcEEEEeec
Q 038747 282 DIWLMSD--MNWIQQFAIGPFLGV---MSPRGIW-------KNNAVLMESDNGTLLLYDLIVEEVRDLGRF 340 (401)
Q Consensus 282 ~IW~l~~--~~W~~~~~i~~~~~~---~~p~~~~-------~~~~il~~~~~~~l~~yd~~t~~~~~v~~~ 340 (401)
+|+.++. ..|+++.+++-...+ ...+.+. +++.|+|.... ...+||++.++..-+...
T Consensus 287 ~VfklD~~~~~WveV~sLgd~aLFlG~~~s~sv~a~e~pG~k~NcIYFtdd~-~~~v~~~~dg~~~~~~~~ 356 (373)
T PLN03215 287 KVYKFDDELAKWMEVKTLGDNAFVMATDTCFSVLAHEFYGCLPNSIYFTEDT-MPKVFKLDNGNGSSIETT 356 (373)
T ss_pred EEEEEcCCCCcEEEecccCCeEEEEECCccEEEecCCCCCccCCEEEEECCC-cceEEECCCCCccceEee
Confidence 9999987 899999887632101 1111111 25677776544 588999999986655443
No 5
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.90 E-value=9.7e-10 Score=71.66 Aligned_cols=42 Identities=29% Similarity=0.615 Sum_probs=36.1
Q ss_pred cCCCCHHHHHHHHhcCChhhhhhhhccchhhhcccCChhhHH
Q 038747 10 SMLMPEDVRLEILSRLPVKSLMRLRCVCKSWYALIENPKFIS 51 (401)
Q Consensus 10 ~~~LP~Dll~~IL~rLP~~sl~r~r~VcK~W~~li~~~~F~~ 51 (401)
+..||+|++.+||..||++++.++.+|||+|+.++.++.+-+
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~ 42 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWR 42 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHH
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhh
Confidence 468999999999999999999999999999999998875543
No 6
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.75 E-value=3.1e-09 Score=69.65 Aligned_cols=44 Identities=36% Similarity=0.613 Sum_probs=37.3
Q ss_pred cCCCCHHHHHHHHhcCChhhhhhhhccchhhhcccCChhhHHhh
Q 038747 10 SMLMPEDVRLEILSRLPVKSLMRLRCVCKSWYALIENPKFISKH 53 (401)
Q Consensus 10 ~~~LP~Dll~~IL~rLP~~sl~r~r~VcK~W~~li~~~~F~~~~ 53 (401)
+..||+|++.+||.+|+++++++++.|||+|++++.++.+...+
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~ 46 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKI 46 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHH
T ss_pred HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHH
Confidence 56799999999999999999999999999999999998876544
No 7
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.73 E-value=6.5e-09 Score=65.61 Aligned_cols=39 Identities=44% Similarity=0.805 Sum_probs=36.7
Q ss_pred CCHHHHHHHHhcCChhhhhhhhccchhhhcccCChhhHH
Q 038747 13 MPEDVRLEILSRLPVKSLMRLRCVCKSWYALIENPKFIS 51 (401)
Q Consensus 13 LP~Dll~~IL~rLP~~sl~r~r~VcK~W~~li~~~~F~~ 51 (401)
||+|++.+||.+|+++++.++++|||+|+.++.++.|.+
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~ 39 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWF 39 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhh
Confidence 799999999999999999999999999999999988754
No 8
>PHA02713 hypothetical protein; Provisional
Probab=98.72 E-value=9.3e-07 Score=89.07 Aligned_cols=196 Identities=12% Similarity=0.093 Sum_probs=120.4
Q ss_pred ceEEEccccccccccCCCCCCCCCcceeeeeeEEEEEeCCCCCeEEEEEEEEeccccCCCCCcceEEEEEcCCCCccccC
Q 038747 119 LIFLWNPATKECRTLPNYSNFLPTCATFLYENAIFGLDHTSGDYKVVFICELWNEQIEAPYEHSLVAIYTSTTDSWRVSK 198 (401)
Q Consensus 119 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~vyss~t~~W~~~~ 198 (401)
.+..+||.+++|..+|+++..+ .......+ +=||.+++..... .....++.|+..+++|+.++
T Consensus 321 ~v~~Yd~~~n~W~~~~~m~~~R-----~~~~~~~~-------~g~IYviGG~~~~-----~~~~sve~Ydp~~~~W~~~~ 383 (557)
T PHA02713 321 KVYKINIENKIHVELPPMIKNR-----CRFSLAVI-------DDTIYAIGGQNGT-----NVERTIECYTMGDDKWKMLP 383 (557)
T ss_pred eEEEEECCCCeEeeCCCCcchh-----hceeEEEE-------CCEEEEECCcCCC-----CCCceEEEEECCCCeEEECC
Confidence 5788999999999999987532 11111111 1256666542111 12457999999999999876
Q ss_pred CCCcccceeeeCCCceeEECceEEEEEeecCC------------------CCccEEEEEEcCCceEeEec-CCCCCCCCC
Q 038747 199 GNVEWIPYDFKSHFKSTNLNGVFYWLVSRDDG------------------DHSNIMLSFHISDEEFREIE-RPRIPYSSH 259 (401)
Q Consensus 199 ~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~------------------~~~~~Il~fD~~~e~~~~i~-lP~~~~~~~ 259 (401)
.. |... .....+.++|.+|-+...... .....+.+||+.+++|..++ +|... ..
T Consensus 384 ~m----p~~r-~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r--~~ 456 (557)
T PHA02713 384 DM----PIAL-SSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGT--IR 456 (557)
T ss_pred CC----Cccc-ccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCccc--cc
Confidence 43 2211 223567899999988653210 01256899999999999874 33322 22
Q ss_pred ceeEEEcCeEEEEeecCC-C---CeEEEEEEcC-CcEEEEEEEcCCCCcccceEEeeCCEEEEEeeC-C--eEEEEECCC
Q 038747 260 ESLGLFNNSVSLLHFDKS-S---HYIDIWLMSD-MNWIQQFAIGPFLGVMSPRGIWKNNAVLMESDN-G--TLLLYDLIV 331 (401)
Q Consensus 260 ~~l~~~~g~L~~~~~~~~-~---~~l~IW~l~~-~~W~~~~~i~~~~~~~~p~~~~~~~~il~~~~~-~--~l~~yd~~t 331 (401)
..+++.+|+|.++..... . ..++.+-.+. ..|+.+..+. .+.....++ .-+|.|++..+. + .+-.||+.|
T Consensus 457 ~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~-~~r~~~~~~-~~~~~iyv~Gg~~~~~~~e~yd~~~ 534 (557)
T PHA02713 457 PGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTE-SRLSALHTI-LHDNTIMMLHCYESYMLQDTFNVYT 534 (557)
T ss_pred CcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccC-cccccceeE-EECCEEEEEeeecceeehhhcCccc
Confidence 337899999987762111 1 1223333333 4799876542 221111222 227888887542 2 488999999
Q ss_pred CcEEEEeec
Q 038747 332 EEVRDLGRF 340 (401)
Q Consensus 332 ~~~~~v~~~ 340 (401)
++|..+.-+
T Consensus 535 ~~W~~~~~~ 543 (557)
T PHA02713 535 YEWNHICHQ 543 (557)
T ss_pred ccccchhhh
Confidence 999998776
No 9
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=98.62 E-value=2.8e-06 Score=85.47 Aligned_cols=209 Identities=12% Similarity=0.096 Sum_probs=132.3
Q ss_pred eccccceEEEeeC--------CceEEEccccccccccCCCCCCCCCcceeeeeeEEEEEeCCCCCeEEEEEEEEeccccC
Q 038747 105 LGPYDGIFCLCDD--------SLIFLWNPATKECRTLPNYSNFLPTCATFLYENAIFGLDHTSGDYKVVFICELWNEQIE 176 (401)
Q Consensus 105 ~~s~~GLl~~~~~--------~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~ 176 (401)
++..+|.|-..++ .....+||.+.+|..+|++...+ ..+|.+ .-..+|.+++...+.
T Consensus 328 ~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R--------~~~~v~----~l~g~iYavGG~dg~--- 392 (571)
T KOG4441|consen 328 VAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKR--------SDFGVA----VLDGKLYAVGGFDGE--- 392 (571)
T ss_pred EEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCcc--------ccceeE----EECCEEEEEeccccc---
Confidence 4455665544421 36789999999999999997642 111111 113566666643322
Q ss_pred CCCCcceEEEEEcCCCCccccCCCCcccceeeeCCCceeEECceEEEEEeecCCC-CccEEEEEEcCCceEeEe-cCCCC
Q 038747 177 APYEHSLVAIYTSTTDSWRVSKGNVEWIPYDFKSHFKSTNLNGVFYWLVSRDDGD-HSNIMLSFHISDEEFREI-ERPRI 254 (401)
Q Consensus 177 ~~~~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~-~~~~Il~fD~~~e~~~~i-~lP~~ 254 (401)
.....+|.|+..++.|..+... +. .......+.++|.+|-+....... .-..+-+||+.+++|+.+ +++..
T Consensus 393 --~~l~svE~YDp~~~~W~~va~m----~~-~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~ 465 (571)
T KOG4441|consen 393 --KSLNSVECYDPVTNKWTPVAPM----LT-RRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTR 465 (571)
T ss_pred --cccccEEEecCCCCcccccCCC----Cc-ceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccc
Confidence 2366899999999999988743 22 122336788999999988755222 347999999999999987 34443
Q ss_pred CCCCCceeEEEcCeEEEEeecCC---CCeEEEEEEcCCcEEEEEEEcCCCCcccceEEe-eCCEEEEEee------CCeE
Q 038747 255 PYSSHESLGLFNNSVSLLHFDKS---SHYIDIWLMSDMNWIQQFAIGPFLGVMSPRGIW-KNNAVLMESD------NGTL 324 (401)
Q Consensus 255 ~~~~~~~l~~~~g~L~~~~~~~~---~~~l~IW~l~~~~W~~~~~i~~~~~~~~p~~~~-~~~~il~~~~------~~~l 324 (401)
.. ...+.+++|+|.++..... ...++..-.+...|+.+..+.. -....++. -++.+++..+ -..+
T Consensus 466 R~--~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~---~rs~~g~~~~~~~ly~vGG~~~~~~l~~v 540 (571)
T KOG4441|consen 466 RS--GFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTS---PRSAVGVVVLGGKLYAVGGFDGNNNLNTV 540 (571)
T ss_pred cc--cceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcc---ccccccEEEECCEEEEEecccCcccccee
Confidence 22 2238899999987762111 2223333333388999743322 12223333 3677776643 2358
Q ss_pred EEEECCCCcEEEEeec
Q 038747 325 LLYDLIVEEVRDLGRF 340 (401)
Q Consensus 325 ~~yd~~t~~~~~v~~~ 340 (401)
-.||+++++|+...-.
T Consensus 541 e~ydp~~d~W~~~~~~ 556 (571)
T KOG4441|consen 541 ECYDPETDTWTEVTEP 556 (571)
T ss_pred EEcCCCCCceeeCCCc
Confidence 9999999999987653
No 10
>PHA02713 hypothetical protein; Provisional
Probab=98.59 E-value=9.1e-06 Score=81.97 Aligned_cols=197 Identities=9% Similarity=0.107 Sum_probs=118.6
Q ss_pred ceEEEccccccccccCCCCCCCCCcceeeeeeEEEEEeCCCCCeEEEEEEEEeccccCCCCCcceEEEEEcCCCCccccC
Q 038747 119 LIFLWNPATKECRTLPNYSNFLPTCATFLYENAIFGLDHTSGDYKVVFICELWNEQIEAPYEHSLVAIYTSTTDSWRVSK 198 (401)
Q Consensus 119 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~vyss~t~~W~~~~ 198 (401)
.+..+||.+++|..+++++... .......+ +=+|..++...... .....++.|+..++.|..++
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r-----~~~~~a~l-------~~~IYviGG~~~~~----~~~~~v~~Yd~~~n~W~~~~ 336 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHI-----INYASAIV-------DNEIIIAGGYNFNN----PSLNKVYKINIENKIHVELP 336 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccc-----cceEEEEE-------CCEEEEEcCCCCCC----CccceEEEEECCCCeEeeCC
Confidence 4677999999999999887531 00111111 12455554321010 12457899999999998876
Q ss_pred CCCcccceeeeCCCceeEECceEEEEEeecCCCCccEEEEEEcCCceEeEec-CCCCCCCCCceeEEEcCeEEEEeecCC
Q 038747 199 GNVEWIPYDFKSHFKSTNLNGVFYWLVSRDDGDHSNIMLSFHISDEEFREIE-RPRIPYSSHESLGLFNNSVSLLHFDKS 277 (401)
Q Consensus 199 ~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~Il~fD~~~e~~~~i~-lP~~~~~~~~~l~~~~g~L~~~~~~~~ 277 (401)
.. +.. ......+.++|.+|-+...........+-+||+.+.+|..++ +|.... ....++++|+|.++.....
T Consensus 337 ~m----~~~-R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~--~~~~~~~~g~IYviGG~~~ 409 (557)
T PHA02713 337 PM----IKN-RCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALS--SYGMCVLDQYIYIIGGRTE 409 (557)
T ss_pred CC----cch-hhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccc--cccEEEECCEEEEEeCCCc
Confidence 43 321 123367889999999876542222357899999999999874 444332 2236788999887752111
Q ss_pred C-------------------CeEEEEEEcC--CcEEEEEEEcCCCCcccceEEeeCCEEEEEeeC-------CeEEEEEC
Q 038747 278 S-------------------HYIDIWLMSD--MNWIQQFAIGPFLGVMSPRGIWKNNAVLMESDN-------GTLLLYDL 329 (401)
Q Consensus 278 ~-------------------~~l~IW~l~~--~~W~~~~~i~~~~~~~~p~~~~~~~~il~~~~~-------~~l~~yd~ 329 (401)
. ..-.+...+- ..|+.+..+. .+ ...+-++.-+|+|++..+. ..+..||+
T Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~-~~-r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp 487 (557)
T PHA02713 410 HIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFW-TG-TIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNT 487 (557)
T ss_pred ccccccccccccccccccccccceEEEECCCCCeEeecCCCC-cc-cccCcEEEECCEEEEEeCCCCCCccceeEEEecC
Confidence 0 0112444443 7898755432 11 1222223346888877542 23679999
Q ss_pred CC-CcEEEEeec
Q 038747 330 IV-EEVRDLGRF 340 (401)
Q Consensus 330 ~t-~~~~~v~~~ 340 (401)
++ ++|+.+...
T Consensus 488 ~~~~~W~~~~~m 499 (557)
T PHA02713 488 NTYNGWELITTT 499 (557)
T ss_pred CCCCCeeEcccc
Confidence 99 899988755
No 11
>PLN02153 epithiospecifier protein
Probab=98.55 E-value=8.8e-06 Score=77.22 Aligned_cols=208 Identities=9% Similarity=0.061 Sum_probs=116.3
Q ss_pred ceEEEccccccccccCCCCCCCCCcceeeeeeEEEEEeCCCCCeEEEEEEEEeccccCCCCCcceEEEEEcCCCCccccC
Q 038747 119 LIFLWNPATKECRTLPNYSNFLPTCATFLYENAIFGLDHTSGDYKVVFICELWNEQIEAPYEHSLVAIYTSTTDSWRVSK 198 (401)
Q Consensus 119 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~vyss~t~~W~~~~ 198 (401)
.++++||.+++|..+|+........ ........+ .=+|+.++..... .....+++|+..++.|+.+.
T Consensus 51 ~~~~yd~~~~~W~~~~~~~~~p~~~-~~~~~~~~~-------~~~iyv~GG~~~~-----~~~~~v~~yd~~t~~W~~~~ 117 (341)
T PLN02153 51 DLYVFDFNTHTWSIAPANGDVPRIS-CLGVRMVAV-------GTKLYIFGGRDEK-----REFSDFYSYDTVKNEWTFLT 117 (341)
T ss_pred cEEEEECCCCEEEEcCccCCCCCCc-cCceEEEEE-------CCEEEEECCCCCC-----CccCcEEEEECCCCEEEEec
Confidence 6899999999999988754211000 000111111 1245555432111 12346899999999999875
Q ss_pred CCCc-ccceeeeCCCceeEECceEEEEEeecCCC------CccEEEEEEcCCceEeEecCCCC--CCCCCceeEEEcCeE
Q 038747 199 GNVE-WIPYDFKSHFKSTNLNGVFYWLVSRDDGD------HSNIMLSFHISDEEFREIERPRI--PYSSHESLGLFNNSV 269 (401)
Q Consensus 199 ~~~~-~~~~~~~~~~~~v~~~G~lywl~~~~~~~------~~~~Il~fD~~~e~~~~i~lP~~--~~~~~~~l~~~~g~L 269 (401)
.... ..|.. ......+..+|.+|-+....... ....+.+||+.+.+|..++.+.. .......+.+.+|++
T Consensus 118 ~~~~~~~p~~-R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~i 196 (341)
T PLN02153 118 KLDEEGGPEA-RTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKI 196 (341)
T ss_pred cCCCCCCCCC-ceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeE
Confidence 4210 11211 11235678899999876543110 11368899999999998764321 111112267789998
Q ss_pred EEEeecC-----C----CCeEEEEEEcC--CcEEEEEEEcCCCC-cccceEEeeCCEEEEEeeC---------------C
Q 038747 270 SLLHFDK-----S----SHYIDIWLMSD--MNWIQQFAIGPFLG-VMSPRGIWKNNAVLMESDN---------------G 322 (401)
Q Consensus 270 ~~~~~~~-----~----~~~l~IW~l~~--~~W~~~~~i~~~~~-~~~p~~~~~~~~il~~~~~---------------~ 322 (401)
.++.-.. . ...-++++.+- .+|+++......+. ....-++.-++.|++..+. .
T Consensus 197 yv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n 276 (341)
T PLN02153 197 WVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSN 276 (341)
T ss_pred EEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEEEEECcccCCccccccccccccc
Confidence 7653100 0 01124566654 89999765432121 1111122235777766432 2
Q ss_pred eEEEEECCCCcEEEEeec
Q 038747 323 TLLLYDLIVEEVRDLGRF 340 (401)
Q Consensus 323 ~l~~yd~~t~~~~~v~~~ 340 (401)
.+..||+++++|+.+...
T Consensus 277 ~v~~~d~~~~~W~~~~~~ 294 (341)
T PLN02153 277 EGYALDTETLVWEKLGEC 294 (341)
T ss_pred cEEEEEcCccEEEeccCC
Confidence 589999999999998754
No 12
>PHA03098 kelch-like protein; Provisional
Probab=98.53 E-value=8.8e-06 Score=82.13 Aligned_cols=196 Identities=11% Similarity=0.149 Sum_probs=119.4
Q ss_pred ceEEEccccccccccCCCCCCCCCcceeeeeeEEEEEeCCCCCeEEEEEEEEeccccCCCCCcceEEEEEcCCCCccccC
Q 038747 119 LIFLWNPATKECRTLPNYSNFLPTCATFLYENAIFGLDHTSGDYKVVFICELWNEQIEAPYEHSLVAIYTSTTDSWRVSK 198 (401)
Q Consensus 119 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~vyss~t~~W~~~~ 198 (401)
.++.+||.|++|..+|+++..+. ...... .+ =++..++..... .....+++|+..+++|+..+
T Consensus 312 ~v~~yd~~~~~W~~~~~~~~~R~-----~~~~~~--~~-----~~lyv~GG~~~~-----~~~~~v~~yd~~~~~W~~~~ 374 (534)
T PHA03098 312 SVVSYDTKTKSWNKVPELIYPRK-----NPGVTV--FN-----NRIYVIGGIYNS-----ISLNTVESWKPGESKWREEP 374 (534)
T ss_pred cEEEEeCCCCeeeECCCCCcccc-----cceEEE--EC-----CEEEEEeCCCCC-----EecceEEEEcCCCCceeeCC
Confidence 68899999999999998774311 111111 11 135555432111 12457899999999999876
Q ss_pred CCCcccceeeeCCCceeEECceEEEEEeecC-CCCccEEEEEEcCCceEeEec-CCCCCCCCCceeEEEcCeEEEEeecC
Q 038747 199 GNVEWIPYDFKSHFKSTNLNGVFYWLVSRDD-GDHSNIMLSFHISDEEFREIE-RPRIPYSSHESLGLFNNSVSLLHFDK 276 (401)
Q Consensus 199 ~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~-~~~~~~Il~fD~~~e~~~~i~-lP~~~~~~~~~l~~~~g~L~~~~~~~ 276 (401)
.. |.. ......+.++|.+|-+..... +.....+..||+.+.+|..+. +|.... .......+|+|.++....
T Consensus 375 ~l----p~~-r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~--~~~~~~~~~~iyv~GG~~ 447 (534)
T PHA03098 375 PL----IFP-RYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHY--GGCAIYHDGKIYVIGGIS 447 (534)
T ss_pred Cc----CcC-CccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCcccc--CceEEEECCEEEEECCcc
Confidence 43 221 123356788999998865321 122357899999999999874 343322 223567788887665211
Q ss_pred CCC----eEEEEEEcC--CcEEEEEEEcCCCCcccceEEeeCCEEEEEee------CCeEEEEECCCCcEEEEeec
Q 038747 277 SSH----YIDIWLMSD--MNWIQQFAIGPFLGVMSPRGIWKNNAVLMESD------NGTLLLYDLIVEEVRDLGRF 340 (401)
Q Consensus 277 ~~~----~l~IW~l~~--~~W~~~~~i~~~~~~~~p~~~~~~~~il~~~~------~~~l~~yd~~t~~~~~v~~~ 340 (401)
... .-.+|+.+. ..|.++..+. .+......+ .-+++|++..+ ...+..||+++++|+.+...
T Consensus 448 ~~~~~~~~~~v~~yd~~~~~W~~~~~~~-~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~ 521 (534)
T PHA03098 448 YIDNIKVYNIVESYNPVTNKWTELSSLN-FPRINASLC-IFNNKIYVVGGDKYEYYINEIEVYDDKTNTWTLFCKF 521 (534)
T ss_pred CCCCCcccceEEEecCCCCceeeCCCCC-cccccceEE-EECCEEEEEcCCcCCcccceeEEEeCCCCEEEecCCC
Confidence 111 123677665 8999864322 121111222 23678877643 23689999999999888654
No 13
>PLN02193 nitrile-specifier protein
Probab=98.52 E-value=1.8e-05 Score=78.26 Aligned_cols=206 Identities=12% Similarity=0.137 Sum_probs=118.8
Q ss_pred ceEEEccccccccccCCCCCCCCCcceeeeeeEEEEEeCCCCCeEEEEEEEEeccccCCCCCcceEEEEEcCCCCccccC
Q 038747 119 LIFLWNPATKECRTLPNYSNFLPTCATFLYENAIFGLDHTSGDYKVVFICELWNEQIEAPYEHSLVAIYTSTTDSWRVSK 198 (401)
Q Consensus 119 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~vyss~t~~W~~~~ 198 (401)
.++++||.+.+|..+|+.... |.......... .++ . ++..++..... .....+++|++.++.|+.+.
T Consensus 194 ~v~~yD~~~~~W~~~~~~g~~-P~~~~~~~~~v--~~~----~-~lYvfGG~~~~-----~~~ndv~~yD~~t~~W~~l~ 260 (470)
T PLN02193 194 HLYVFDLETRTWSISPATGDV-PHLSCLGVRMV--SIG----S-TLYVFGGRDAS-----RQYNGFYSFDTTTNEWKLLT 260 (470)
T ss_pred cEEEEECCCCEEEeCCCCCCC-CCCcccceEEE--EEC----C-EEEEECCCCCC-----CCCccEEEEECCCCEEEEcC
Confidence 588999999999988764211 11000001111 111 1 34444321111 12346899999999999876
Q ss_pred CCCcccceeeeCCCceeEECceEEEEEeecCCCCccEEEEEEcCCceEeEecCCCCCC--CCCceeEEEcCeEEEEeecC
Q 038747 199 GNVEWIPYDFKSHFKSTNLNGVFYWLVSRDDGDHSNIMLSFHISDEEFREIERPRIPY--SSHESLGLFNNSVSLLHFDK 276 (401)
Q Consensus 199 ~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~Il~fD~~~e~~~~i~lP~~~~--~~~~~l~~~~g~L~~~~~~~ 276 (401)
.... .|.. ......+.+++.+|.+...........+.+||+.+.+|..++.|.... .....+.+.+|++.++.-..
T Consensus 261 ~~~~-~P~~-R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~ 338 (470)
T PLN02193 261 PVEE-GPTP-RSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFN 338 (470)
T ss_pred cCCC-CCCC-ccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCC
Confidence 4311 1111 112355678999998865431122356889999999999887643221 11123677889987665212
Q ss_pred CCCeEEEEEEcC--CcEEEEEEEc--CCCCcccceEEeeCCEEEEEeeC---------------CeEEEEECCCCcEEEE
Q 038747 277 SSHYIDIWLMSD--MNWIQQFAIG--PFLGVMSPRGIWKNNAVLMESDN---------------GTLLLYDLIVEEVRDL 337 (401)
Q Consensus 277 ~~~~l~IW~l~~--~~W~~~~~i~--~~~~~~~p~~~~~~~~il~~~~~---------------~~l~~yd~~t~~~~~v 337 (401)
....-++|+.+- ..|+++.... |.+... .-++.-++.|++.... ..+.+||+.+++|+.+
T Consensus 339 g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~ 417 (470)
T PLN02193 339 GCEVDDVHYYDPVQDKWTQVETFGVRPSERSV-FASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERL 417 (470)
T ss_pred CCccCceEEEECCCCEEEEeccCCCCCCCcce-eEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEc
Confidence 222346777765 8899976543 222111 1222336777766431 1489999999999998
Q ss_pred eec
Q 038747 338 GRF 340 (401)
Q Consensus 338 ~~~ 340 (401)
...
T Consensus 418 ~~~ 420 (470)
T PLN02193 418 DKF 420 (470)
T ss_pred ccC
Confidence 754
No 14
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=98.39 E-value=4.3e-05 Score=77.05 Aligned_cols=197 Identities=13% Similarity=0.109 Sum_probs=124.9
Q ss_pred ceEEEccccccccccCCCCCCCCCcceeeeeeEEEEEeCCCCCeEEEEEEEEeccccCCCCCcceEEEEEcCCCCccccC
Q 038747 119 LIFLWNPATKECRTLPNYSNFLPTCATFLYENAIFGLDHTSGDYKVVFICELWNEQIEAPYEHSLVAIYTSTTDSWRVSK 198 (401)
Q Consensus 119 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~vyss~t~~W~~~~ 198 (401)
.+..+||.+++|..+.+++..+. ..+.+.-. =+|..++....+ ......++.|++.++.|+..+
T Consensus 302 ~ve~yd~~~~~w~~~a~m~~~r~--------~~~~~~~~----~~lYv~GG~~~~----~~~l~~ve~YD~~~~~W~~~a 365 (571)
T KOG4441|consen 302 SVECYDPKTNEWSSLAPMPSPRC--------RVGVAVLN----GKLYVVGGYDSG----SDRLSSVERYDPRTNQWTPVA 365 (571)
T ss_pred eeEEecCCcCcEeecCCCCcccc--------cccEEEEC----CEEEEEccccCC----CcccceEEEecCCCCceeccC
Confidence 56788999999999998876421 11221111 156666543211 124678999999999999976
Q ss_pred CCCcccceeeeCCCceeEECceEEEEEeecCCCCccEEEEEEcCCceEeEec-CCCCCCCCCceeEEEcCeEEEEee-cC
Q 038747 199 GNVEWIPYDFKSHFKSTNLNGVFYWLVSRDDGDHSNIMLSFHISDEEFREIE-RPRIPYSSHESLGLFNNSVSLLHF-DK 276 (401)
Q Consensus 199 ~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~Il~fD~~~e~~~~i~-lP~~~~~~~~~l~~~~g~L~~~~~-~~ 276 (401)
.. .. ....-..+.++|.+|-+........-..+-.||..+.+|..+. ++.. ......++++|+|+++.. +.
T Consensus 366 ~M----~~-~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~--r~~~gv~~~~g~iYi~GG~~~ 438 (571)
T KOG4441|consen 366 PM----NT-KRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTR--RSGHGVAVLGGKLYIIGGGDG 438 (571)
T ss_pred Cc----cC-ccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcc--eeeeEEEEECCEEEEEcCcCC
Confidence 43 21 1223367899999999987662233467999999999999984 4542 222237889999987762 12
Q ss_pred CC---CeEEEEEEcCCcEEEEEEEcCCCCcccceEEeeCCEEEEEeeCC------eEEEEECCCCcEEEEeec
Q 038747 277 SS---HYIDIWLMSDMNWIQQFAIGPFLGVMSPRGIWKNNAVLMESDNG------TLLLYDLIVEEVRDLGRF 340 (401)
Q Consensus 277 ~~---~~l~IW~l~~~~W~~~~~i~~~~~~~~p~~~~~~~~il~~~~~~------~l~~yd~~t~~~~~v~~~ 340 (401)
.. ..++..--....|..+..+.-.. ....+++ -++.|+...+.. .+-.||+++++|..+...
T Consensus 439 ~~~~l~sve~YDP~t~~W~~~~~M~~~R-~~~g~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m 509 (571)
T KOG4441|consen 439 SSNCLNSVECYDPETNTWTLIAPMNTRR-SGFGVAV-LNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPM 509 (571)
T ss_pred CccccceEEEEcCCCCceeecCCccccc-ccceEEE-ECCEEEEECCccCCCccceEEEEcCCCCceeEcccC
Confidence 22 22333333338898866543211 1222332 267887775422 378899999999999644
No 15
>PHA02790 Kelch-like protein; Provisional
Probab=98.39 E-value=3.9e-05 Score=76.14 Aligned_cols=184 Identities=11% Similarity=0.059 Sum_probs=114.4
Q ss_pred ceEEEccccccccccCCCCCCCCCcceeeeeeEEEEEeCCCCCeEEEEEEEEeccccCCCCCcceEEEEEcCCCCccccC
Q 038747 119 LIFLWNPATKECRTLPNYSNFLPTCATFLYENAIFGLDHTSGDYKVVFICELWNEQIEAPYEHSLVAIYTSTTDSWRVSK 198 (401)
Q Consensus 119 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~vyss~t~~W~~~~ 198 (401)
....+||.+++|..+|+++..+. ..... .. +=+|.+++... ....++.|+..+++|..++
T Consensus 288 ~v~~Ydp~~~~W~~~~~m~~~r~-----~~~~v--~~-----~~~iYviGG~~--------~~~sve~ydp~~n~W~~~~ 347 (480)
T PHA02790 288 NAIAVNYISNNWIPIPPMNSPRL-----YASGV--PA-----NNKLYVVGGLP--------NPTSVERWFHGDAAWVNMP 347 (480)
T ss_pred eEEEEECCCCEEEECCCCCchhh-----cceEE--EE-----CCEEEEECCcC--------CCCceEEEECCCCeEEECC
Confidence 56678999999999999875321 11111 11 12555655321 1245899999999999876
Q ss_pred CCCcccceeeeCCCceeEECceEEEEEeecCCCCccEEEEEEcCCceEeEecC-CCCCCCCCceeEEEcCeEEEEeecCC
Q 038747 199 GNVEWIPYDFKSHFKSTNLNGVFYWLVSRDDGDHSNIMLSFHISDEEFREIER-PRIPYSSHESLGLFNNSVSLLHFDKS 277 (401)
Q Consensus 199 ~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~Il~fD~~~e~~~~i~l-P~~~~~~~~~l~~~~g~L~~~~~~~~ 277 (401)
.. +.. ......+.++|.+|-+.... + ....+-+||+.+++|..++. |.+.. ....++.+|+|.++. .
T Consensus 348 ~l----~~~-r~~~~~~~~~g~IYviGG~~-~-~~~~ve~ydp~~~~W~~~~~m~~~r~--~~~~~~~~~~IYv~G--G- 415 (480)
T PHA02790 348 SL----LKP-RCNPAVASINNVIYVIGGHS-E-TDTTTEYLLPNHDQWQFGPSTYYPHY--KSCALVFGRRLFLVG--R- 415 (480)
T ss_pred CC----CCC-CcccEEEEECCEEEEecCcC-C-CCccEEEEeCCCCEEEeCCCCCCccc--cceEEEECCEEEEEC--C-
Confidence 43 321 12346788999999887643 1 12467899999999999743 33221 223667899987764 1
Q ss_pred CCeEEEEEEcCCcEEEEEEEcCCCCcccceEEeeCCEEEEEeeC------CeEEEEECCCCcEEEEe
Q 038747 278 SHYIDIWLMSDMNWIQQFAIGPFLGVMSPRGIWKNNAVLMESDN------GTLLLYDLIVEEVRDLG 338 (401)
Q Consensus 278 ~~~l~IW~l~~~~W~~~~~i~~~~~~~~p~~~~~~~~il~~~~~------~~l~~yd~~t~~~~~v~ 338 (401)
..+++-.+...|+....+. .+ ....-++.-+|+|++..+. ..+-.||+++++|+..+
T Consensus 416 --~~e~ydp~~~~W~~~~~m~-~~-r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W~~~~ 478 (480)
T PHA02790 416 --NAEFYCESSNTWTLIDDPI-YP-RDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTYSWNIWD 478 (480)
T ss_pred --ceEEecCCCCcEeEcCCCC-CC-ccccEEEEECCEEEEECCcCCCcccceEEEEECCCCeEEecC
Confidence 2344444448999765432 22 1112222337888887542 35889999999997643
No 16
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=98.37 E-value=6.1e-05 Score=70.87 Aligned_cols=154 Identities=16% Similarity=0.150 Sum_probs=94.8
Q ss_pred cceEEEEEcCCCCc----cccCCCCcccceeeeCCCceeEECceEEEEEeecCCCCccEEEEEEcCCceEeEec-CCCCC
Q 038747 181 HSLVAIYTSTTDSW----RVSKGNVEWIPYDFKSHFKSTNLNGVFYWLVSRDDGDHSNIMLSFHISDEEFREIE-RPRIP 255 (401)
Q Consensus 181 ~~~~~vyss~t~~W----~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~Il~fD~~~e~~~~i~-lP~~~ 255 (401)
...++.|+..++.| +..+ ++|... ....++.++|.+|-+.....+.....+.+||+.+.+|..++ +|...
T Consensus 87 ~~~v~~~d~~~~~w~~~~~~~~----~lp~~~-~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~ 161 (323)
T TIGR03548 87 FSSVYRITLDESKEELICETIG----NLPFTF-ENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEP 161 (323)
T ss_pred ceeEEEEEEcCCceeeeeeEcC----CCCcCc-cCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCC
Confidence 45788899999988 4433 233221 22367788999999876432223467999999999999985 56432
Q ss_pred CCCCceeEEEcCeEEEEeecCCCCeEEEEEEcC--CcEEEEEEEc--CCCC-c-ccceEEeeCCEEEEEeeC--------
Q 038747 256 YSSHESLGLFNNSVSLLHFDKSSHYIDIWLMSD--MNWIQQFAIG--PFLG-V-MSPRGIWKNNAVLMESDN-------- 321 (401)
Q Consensus 256 ~~~~~~l~~~~g~L~~~~~~~~~~~l~IW~l~~--~~W~~~~~i~--~~~~-~-~~p~~~~~~~~il~~~~~-------- 321 (401)
.. ...+++.+++|.++.-.......++|+.+- ..|.++.... +.+. . ........++.|++..+.
T Consensus 162 r~-~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~ 240 (323)
T TIGR03548 162 RV-QPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDA 240 (323)
T ss_pred CC-cceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHH
Confidence 21 222567899988776222222345666665 8898765421 1110 0 111112235677766331
Q ss_pred ------------------------------CeEEEEECCCCcEEEEeec
Q 038747 322 ------------------------------GTLLLYDLIVEEVRDLGRF 340 (401)
Q Consensus 322 ------------------------------~~l~~yd~~t~~~~~v~~~ 340 (401)
..+..||+++++|+.+.-.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~ 289 (323)
T TIGR03548 241 VIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNS 289 (323)
T ss_pred HhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEcccc
Confidence 3599999999999988743
No 17
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=98.17 E-value=0.00074 Score=64.19 Aligned_cols=206 Identities=13% Similarity=0.137 Sum_probs=114.3
Q ss_pred CceEEEc--cccccccccCCCCCCCCCcceeeeeeEEEEEeCCCCCeEEEEEEEEecccc-CCCCCcceEEEEEcCCCCc
Q 038747 118 SLIFLWN--PATKECRTLPNYSNFLPTCATFLYENAIFGLDHTSGDYKVVFICELWNEQI-EAPYEHSLVAIYTSTTDSW 194 (401)
Q Consensus 118 ~~~~V~N--P~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~-~~~~~~~~~~vyss~t~~W 194 (401)
..+++.+ |.+++|..+|+++... ....... ..+ =+|..++....... ........++.|+..+++|
T Consensus 29 ~~~~~~d~~~~~~~W~~l~~~p~~~----R~~~~~~--~~~-----~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W 97 (346)
T TIGR03547 29 TSWYKLDLKKPSKGWQKIADFPGGP----RNQAVAA--AID-----GKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSW 97 (346)
T ss_pred CeeEEEECCCCCCCceECCCCCCCC----cccceEE--EEC-----CEEEEEeCCCCCCCCCcceecccEEEEECCCCEE
Confidence 4567777 4678999999876311 0001111 111 25555553211100 0000134689999999999
Q ss_pred cccCCCCcccceeeeCCCcee-EECceEEEEEeecCCC----------------------------------CccEEEEE
Q 038747 195 RVSKGNVEWIPYDFKSHFKST-NLNGVFYWLVSRDDGD----------------------------------HSNIMLSF 239 (401)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~v-~~~G~lywl~~~~~~~----------------------------------~~~~Il~f 239 (401)
+.+... .|... .....+ .++|.+|-+....... ....+.+|
T Consensus 98 ~~~~~~---~p~~~-~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Y 173 (346)
T TIGR03547 98 QKLDTR---SPVGL-LGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSY 173 (346)
T ss_pred ecCCCC---CCCcc-cceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEE
Confidence 998631 22211 111233 6899999886532100 01479999
Q ss_pred EcCCceEeEec-CCCCCCCCCceeEEEcCeEEEEeec--CCCCeEEEEEEc--C--CcEEEEEEEcCCCCc--c----cc
Q 038747 240 HISDEEFREIE-RPRIPYSSHESLGLFNNSVSLLHFD--KSSHYIDIWLMS--D--MNWIQQFAIGPFLGV--M----SP 306 (401)
Q Consensus 240 D~~~e~~~~i~-lP~~~~~~~~~l~~~~g~L~~~~~~--~~~~~l~IW~l~--~--~~W~~~~~i~~~~~~--~----~p 306 (401)
|+.+.+|+.+. +|.... ....+.+.+|+|.++.-. ......++|..+ . ..|.++..+. .+.. . ..
T Consensus 174 Dp~t~~W~~~~~~p~~~r-~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~-~~r~~~~~~~~~~ 251 (346)
T TIGR03547 174 DPSTNQWRNLGENPFLGT-AGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLP-PPKSSSQEGLAGA 251 (346)
T ss_pred ECCCCceeECccCCCCcC-CCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCC-CCCCCccccccEE
Confidence 99999999984 443211 222367789998877521 112234566543 2 6898865542 2111 0 11
Q ss_pred eEEeeCCEEEEEeeC-----------------------CeEEEEECCCCcEEEEeec
Q 038747 307 RGIWKNNAVLMESDN-----------------------GTLLLYDLIVEEVRDLGRF 340 (401)
Q Consensus 307 ~~~~~~~~il~~~~~-----------------------~~l~~yd~~t~~~~~v~~~ 340 (401)
.++.-+++|++..+. ..+-.||+++++|+.+...
T Consensus 252 ~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~l 308 (346)
T TIGR03547 252 FAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKL 308 (346)
T ss_pred eeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCC
Confidence 122347888776432 1356899999999887654
No 18
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=98.11 E-value=0.00055 Score=65.82 Aligned_cols=241 Identities=12% Similarity=0.135 Sum_probs=127.3
Q ss_pred ccccceEEEee---CCceEEEccc--cccccccCCCCCCCCCcceeeeeeEEEEEeCCCCCeEEEEEEEEeccccCC-CC
Q 038747 106 GPYDGIFCLCD---DSLIFLWNPA--TKECRTLPNYSNFLPTCATFLYENAIFGLDHTSGDYKVVFICELWNEQIEA-PY 179 (401)
Q Consensus 106 ~s~~GLl~~~~---~~~~~V~NP~--T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~-~~ 179 (401)
+..++-|.+.. ...+++.++. +++|..+|+++..... ....... + =+|..++......... ..
T Consensus 35 ~~~~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~r~----~~~~v~~--~-----~~IYV~GG~~~~~~~~~~~ 103 (376)
T PRK14131 35 AIDNNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGGPRE----QAVAAFI--D-----GKLYVFGGIGKTNSEGSPQ 103 (376)
T ss_pred EEECCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCCCcc----cceEEEE--C-----CEEEEEcCCCCCCCCCcee
Confidence 34455554432 2356777764 5789999876532110 0111111 1 1344444311100000 01
Q ss_pred CcceEEEEEcCCCCccccCCCCcccceeeeCCCceeE-ECceEEEEEeecCC----------------------------
Q 038747 180 EHSLVAIYTSTTDSWRVSKGNVEWIPYDFKSHFKSTN-LNGVFYWLVSRDDG---------------------------- 230 (401)
Q Consensus 180 ~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~~~v~-~~G~lywl~~~~~~---------------------------- 230 (401)
....++.|+..+++|+.+... .|... .....+. .+|.+|-+......
T Consensus 104 ~~~~v~~YD~~~n~W~~~~~~---~p~~~-~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~ 179 (376)
T PRK14131 104 VFDDVYKYDPKTNSWQKLDTR---SPVGL-AGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFD 179 (376)
T ss_pred EcccEEEEeCCCCEEEeCCCC---CCCcc-cceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhc
Confidence 134689999999999998631 12211 1113344 79999998654210
Q ss_pred ------CCccEEEEEEcCCceEeEec-CCCCCCCCCceeEEEcCeEEEEeec--CCCCeEEEEEEc--C--CcEEEEEEE
Q 038747 231 ------DHSNIMLSFHISDEEFREIE-RPRIPYSSHESLGLFNNSVSLLHFD--KSSHYIDIWLMS--D--MNWIQQFAI 297 (401)
Q Consensus 231 ------~~~~~Il~fD~~~e~~~~i~-lP~~~~~~~~~l~~~~g~L~~~~~~--~~~~~l~IW~l~--~--~~W~~~~~i 297 (401)
.....+.+||+.+.+|..+. +|.... ....++..+++|.++... ......++|..+ . ..|.++..+
T Consensus 180 ~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~-~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~ 258 (376)
T PRK14131 180 KKPEDYFFNKEVLSYDPSTNQWKNAGESPFLGT-AGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDL 258 (376)
T ss_pred CChhhcCcCceEEEEECCCCeeeECCcCCCCCC-CcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCC
Confidence 01247999999999999874 453221 122366778888876521 123445666543 2 789987755
Q ss_pred cCCCC-c-----ccceEEeeCCEEEEEeeCC-----------------------eEEEEECCCCcEEEEeeccCCCCCce
Q 038747 298 GPFLG-V-----MSPRGIWKNNAVLMESDNG-----------------------TLLLYDLIVEEVRDLGRFTRGTLGTA 348 (401)
Q Consensus 298 ~~~~~-~-----~~p~~~~~~~~il~~~~~~-----------------------~l~~yd~~t~~~~~v~~~~~~~~~~~ 348 (401)
..... . ....+..-+++|++..+.. .+-.||+++++|+.+... ..+...
T Consensus 259 p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~l--p~~r~~ 336 (376)
T PRK14131 259 PPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGEL--PQGLAY 336 (376)
T ss_pred CCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcC--CCCccc
Confidence 32110 0 0111223467887764321 134799999999887654 222212
Q ss_pred EEEEEEecceeeCCCc
Q 038747 349 ILTYCYKESLVRLKRV 364 (401)
Q Consensus 349 ~~~~~y~eslv~~~~~ 364 (401)
..+......++-+++.
T Consensus 337 ~~av~~~~~iyv~GG~ 352 (376)
T PRK14131 337 GVSVSWNNGVLLIGGE 352 (376)
T ss_pred eEEEEeCCEEEEEcCC
Confidence 3344455555555543
No 19
>PHA03098 kelch-like protein; Provisional
Probab=98.07 E-value=0.00036 Score=70.48 Aligned_cols=218 Identities=12% Similarity=0.113 Sum_probs=124.8
Q ss_pred ceEEEccccccccccCCCCCCCCCcceeeeeeEEEEEeCCCCCeEEEEEEEEeccccCCCCCcceEEEEEcCCCCccccC
Q 038747 119 LIFLWNPATKECRTLPNYSNFLPTCATFLYENAIFGLDHTSGDYKVVFICELWNEQIEAPYEHSLVAIYTSTTDSWRVSK 198 (401)
Q Consensus 119 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~vyss~t~~W~~~~ 198 (401)
.+.-+|+.+++|..++..+... ... +... +-+++.++...... .....+..|+..++.|...+
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~------~~~--~~~~-----~~~lyv~GG~~~~~----~~~~~v~~yd~~~~~W~~~~ 327 (534)
T PHA03098 265 NYITNYSPLSEINTIIDIHYVY------CFG--SVVL-----NNVIYFIGGMNKNN----LSVNSVVSYDTKTKSWNKVP 327 (534)
T ss_pred eeeecchhhhhcccccCccccc------cce--EEEE-----CCEEEEECCCcCCC----CeeccEEEEeCCCCeeeECC
Confidence 3445788899999887654310 001 1111 12445544321111 11346889999999998776
Q ss_pred CCCcccceeeeCCCceeEECceEEEEEeecCCCCccEEEEEEcCCceEeEec-CCCCCCCCCceeEEEcCeEEEEeec--
Q 038747 199 GNVEWIPYDFKSHFKSTNLNGVFYWLVSRDDGDHSNIMLSFHISDEEFREIE-RPRIPYSSHESLGLFNNSVSLLHFD-- 275 (401)
Q Consensus 199 ~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~Il~fD~~~e~~~~i~-lP~~~~~~~~~l~~~~g~L~~~~~~-- 275 (401)
.. +.. ......+.++|.+|-+...........+..||+.+.+|..++ +|.+.. ....+..+|++.++...
T Consensus 328 ~~----~~~-R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~--~~~~~~~~~~iYv~GG~~~ 400 (534)
T PHA03098 328 EL----IYP-RKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRY--NPCVVNVNNLIYVIGGISK 400 (534)
T ss_pred CC----Ccc-cccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCc--cceEEEECCEEEEECCcCC
Confidence 43 211 122467888999998876542223357889999999999874 454322 22357788888876521
Q ss_pred CCCCeEEEEEEcC--CcEEEEEEEcCCCCcccceEEeeCCEEEEEeeC---------CeEEEEECCCCcEEEEeeccCCC
Q 038747 276 KSSHYIDIWLMSD--MNWIQQFAIGPFLGVMSPRGIWKNNAVLMESDN---------GTLLLYDLIVEEVRDLGRFTRGT 344 (401)
Q Consensus 276 ~~~~~l~IW~l~~--~~W~~~~~i~~~~~~~~p~~~~~~~~il~~~~~---------~~l~~yd~~t~~~~~v~~~~~~~ 344 (401)
.....-.+++.+- ..|.+...+ |.+ .....++.-++.|++..+. ..+..||+++++|+.+... ..
T Consensus 401 ~~~~~~~v~~yd~~t~~W~~~~~~-p~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~--~~ 476 (534)
T PHA03098 401 NDELLKTVECFSLNTNKWSKGSPL-PIS-HYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSL--NF 476 (534)
T ss_pred CCcccceEEEEeCCCCeeeecCCC-Ccc-ccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCC--Cc
Confidence 1111124555554 889885432 212 1222233446788776431 2389999999999998654 22
Q ss_pred CCceEEEEEEecceeeCCCc
Q 038747 345 LGTAILTYCYKESLVRLKRV 364 (401)
Q Consensus 345 ~~~~~~~~~y~eslv~~~~~ 364 (401)
+......+.+...+.-+++.
T Consensus 477 ~r~~~~~~~~~~~iyv~GG~ 496 (534)
T PHA03098 477 PRINASLCIFNNKIYVVGGD 496 (534)
T ss_pred ccccceEEEECCEEEEEcCC
Confidence 22133455565555555544
No 20
>PLN02193 nitrile-specifier protein
Probab=98.03 E-value=0.0021 Score=63.70 Aligned_cols=156 Identities=13% Similarity=0.143 Sum_probs=91.8
Q ss_pred ceEEEEEcCCCCccccCCCCcccceeeeCCCceeEECceEEEEEeecCCCCccEEEEEEcCCceEeEecC----CCCCCC
Q 038747 182 SLVAIYTSTTDSWRVSKGNVEWIPYDFKSHFKSTNLNGVFYWLVSRDDGDHSNIMLSFHISDEEFREIER----PRIPYS 257 (401)
Q Consensus 182 ~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~Il~fD~~~e~~~~i~l----P~~~~~ 257 (401)
..+++|+.++++|+.+.... ..|.........+.+++.+|-+...........+.+||+.+.+|..+.. |....
T Consensus 193 ~~v~~yD~~~~~W~~~~~~g-~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~- 270 (470)
T PLN02193 193 KHLYVFDLETRTWSISPATG-DVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRS- 270 (470)
T ss_pred CcEEEEECCCCEEEeCCCCC-CCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCcc-
Confidence 45899999999999764321 1221111123567889999987654311223578899999999999743 22111
Q ss_pred CCceeEEEcCeEEEEee-cCCCCeEEEEEEcC--CcEEEEEEEcCCC-CcccceEEeeCCEEEEEee-----CCeEEEEE
Q 038747 258 SHESLGLFNNSVSLLHF-DKSSHYIDIWLMSD--MNWIQQFAIGPFL-GVMSPRGIWKNNAVLMESD-----NGTLLLYD 328 (401)
Q Consensus 258 ~~~~l~~~~g~L~~~~~-~~~~~~l~IW~l~~--~~W~~~~~i~~~~-~~~~p~~~~~~~~il~~~~-----~~~l~~yd 328 (401)
...+++.+++|.++.- ......-++|+.+- ..|..+......+ .......+.-+++|++... ...+..||
T Consensus 271 -~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD 349 (470)
T PLN02193 271 -FHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYD 349 (470)
T ss_pred -ceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCCccCceEEEE
Confidence 1225667888877652 11112234566554 8898754321111 0111112223567766532 24699999
Q ss_pred CCCCcEEEEeec
Q 038747 329 LIVEEVRDLGRF 340 (401)
Q Consensus 329 ~~t~~~~~v~~~ 340 (401)
+++++|+.+...
T Consensus 350 ~~t~~W~~~~~~ 361 (470)
T PLN02193 350 PVQDKWTQVETF 361 (470)
T ss_pred CCCCEEEEeccC
Confidence 999999998654
No 21
>PHA02790 Kelch-like protein; Provisional
Probab=97.95 E-value=0.00081 Score=66.82 Aligned_cols=168 Identities=7% Similarity=0.010 Sum_probs=107.6
Q ss_pred cceEEEEEcCCCCccccCCCCcccceeeeCCCceeEECceEEEEEeecCCCCccEEEEEEcCCceEeEec-CCCCCCCCC
Q 038747 181 HSLVAIYTSTTDSWRVSKGNVEWIPYDFKSHFKSTNLNGVFYWLVSRDDGDHSNIMLSFHISDEEFREIE-RPRIPYSSH 259 (401)
Q Consensus 181 ~~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~Il~fD~~~e~~~~i~-lP~~~~~~~ 259 (401)
...++.|+..++.|..++..+. +. .....+.+||.+|-+.... ....+-.||+.+++|..++ +|.... .
T Consensus 286 ~~~v~~Ydp~~~~W~~~~~m~~--~r---~~~~~v~~~~~iYviGG~~---~~~sve~ydp~~n~W~~~~~l~~~r~--~ 355 (480)
T PHA02790 286 HNNAIAVNYISNNWIPIPPMNS--PR---LYASGVPANNKLYVVGGLP---NPTSVERWFHGDAAWVNMPSLLKPRC--N 355 (480)
T ss_pred CCeEEEEECCCCEEEECCCCCc--hh---hcceEEEECCEEEEECCcC---CCCceEEEECCCCeEEECCCCCCCCc--c
Confidence 4568899999999998875421 11 1235688999999987653 1246789999999999873 443322 2
Q ss_pred ceeEEEcCeEEEEee-cCCCCeEEEEEEcCCcEEEEEEEcCCCCcccceEEeeCCEEEEEeeCCeEEEEECCCCcEEEEe
Q 038747 260 ESLGLFNNSVSLLHF-DKSSHYIDIWLMSDMNWIQQFAIGPFLGVMSPRGIWKNNAVLMESDNGTLLLYDLIVEEVRDLG 338 (401)
Q Consensus 260 ~~l~~~~g~L~~~~~-~~~~~~l~IW~l~~~~W~~~~~i~~~~~~~~p~~~~~~~~il~~~~~~~l~~yd~~t~~~~~v~ 338 (401)
...++++|+|.++.. ......++.+-.+...|+...... .+ .....++.-+|+|++..+ ..-.||+++++|+.+.
T Consensus 356 ~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~-~~-r~~~~~~~~~~~IYv~GG--~~e~ydp~~~~W~~~~ 431 (480)
T PHA02790 356 PAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTY-YP-HYKSCALVFGRRLFLVGR--NAEFYCESSNTWTLID 431 (480)
T ss_pred cEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCC-Cc-cccceEEEECCEEEEECC--ceEEecCCCCcEeEcC
Confidence 237788999987752 112244566655558998853321 11 122233344788888764 4678999999999886
Q ss_pred eccCCCCCceEEEEEEecceeeCCCc
Q 038747 339 RFTRGTLGTAILTYCYKESLVRLKRV 364 (401)
Q Consensus 339 ~~~~~~~~~~~~~~~y~eslv~~~~~ 364 (401)
-. ..+.....+.++...+.-+++.
T Consensus 432 ~m--~~~r~~~~~~v~~~~IYviGG~ 455 (480)
T PHA02790 432 DP--IYPRDNPELIIVDNKLLLIGGF 455 (480)
T ss_pred CC--CCCccccEEEEECCEEEEECCc
Confidence 54 3333244566666666666654
No 22
>PLN02153 epithiospecifier protein
Probab=97.94 E-value=0.0036 Score=59.37 Aligned_cols=155 Identities=12% Similarity=0.117 Sum_probs=91.2
Q ss_pred ceEEEEEcCCCCccccCCCCcccceeeeCCCceeEECceEEEEEeecCCCCccEEEEEEcCCceEeEec-C-----CCCC
Q 038747 182 SLVAIYTSTTDSWRVSKGNVEWIPYDFKSHFKSTNLNGVFYWLVSRDDGDHSNIMLSFHISDEEFREIE-R-----PRIP 255 (401)
Q Consensus 182 ~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~Il~fD~~~e~~~~i~-l-----P~~~ 255 (401)
..+++|+..++.|+...... ..|.........+.++|.+|-+...........+.+||+.+.+|..++ + |...
T Consensus 50 ~~~~~yd~~~~~W~~~~~~~-~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R 128 (341)
T PLN02153 50 KDLYVFDFNTHTWSIAPANG-DVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEAR 128 (341)
T ss_pred CcEEEEECCCCEEEEcCccC-CCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCc
Confidence 46899999999999775421 112111112356888999998865432222347899999999999874 2 2211
Q ss_pred CCCCceeEEEcCeEEEEeecCCC-------CeEEEEEEcC--CcEEEEEEEc--CCCCcccceEEeeCCEEEEEee----
Q 038747 256 YSSHESLGLFNNSVSLLHFDKSS-------HYIDIWLMSD--MNWIQQFAIG--PFLGVMSPRGIWKNNAVLMESD---- 320 (401)
Q Consensus 256 ~~~~~~l~~~~g~L~~~~~~~~~-------~~l~IW~l~~--~~W~~~~~i~--~~~~~~~p~~~~~~~~il~~~~---- 320 (401)
......+.+++|.++.-.... ..-+||+.+- ..|..+.... +.......+++ -+++|++..+
T Consensus 129 --~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~ 205 (341)
T PLN02153 129 --TFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAV-VQGKIWVVYGFATS 205 (341)
T ss_pred --eeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEE-ECCeEEEEeccccc
Confidence 112266778888766521111 1124666654 8899754322 11101111222 3566765421
Q ss_pred ----------CCeEEEEECCCCcEEEEeec
Q 038747 321 ----------NGTLLLYDLIVEEVRDLGRF 340 (401)
Q Consensus 321 ----------~~~l~~yd~~t~~~~~v~~~ 340 (401)
...+..||+++++|+++...
T Consensus 206 ~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~ 235 (341)
T PLN02153 206 ILPGGKSDYESNAVQFFDPASGKWTEVETT 235 (341)
T ss_pred cccCCccceecCceEEEEcCCCcEEecccc
Confidence 23589999999999998754
No 23
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=97.66 E-value=0.0055 Score=58.95 Aligned_cols=148 Identities=14% Similarity=0.146 Sum_probs=84.5
Q ss_pred ceEEEEEcCCCCccccCCCCcccceeeeCCCceeEECceEEEEEeecC-CCC--ccEEEEEEcCCceEeEec-CCCCCCC
Q 038747 182 SLVAIYTSTTDSWRVSKGNVEWIPYDFKSHFKSTNLNGVFYWLVSRDD-GDH--SNIMLSFHISDEEFREIE-RPRIPYS 257 (401)
Q Consensus 182 ~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~-~~~--~~~Il~fD~~~e~~~~i~-lP~~~~~ 257 (401)
..+++|+..++.|+..... |.........+.++|.+|.+..... +.. ......||.++.+|..+. +|.....
T Consensus 189 ~~v~~YD~~t~~W~~~~~~----p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~ 264 (376)
T PRK14131 189 KEVLSYDPSTNQWKNAGES----PFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAPGG 264 (376)
T ss_pred ceEEEEECCCCeeeECCcC----CCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCCCCcC
Confidence 4689999999999987643 3211122356778999999876431 111 234456778899999874 5543221
Q ss_pred C-----Cce-eEEEcCeEEEEeecCCC--------------------CeEEEEEEcCCcEEEEEEEcCCCCcccceEEee
Q 038747 258 S-----HES-LGLFNNSVSLLHFDKSS--------------------HYIDIWLMSDMNWIQQFAIGPFLGVMSPRGIWK 311 (401)
Q Consensus 258 ~-----~~~-l~~~~g~L~~~~~~~~~--------------------~~l~IW~l~~~~W~~~~~i~~~~~~~~p~~~~~ 311 (401)
. ... ..+.+|+|.++.-.... ...+++-.+...|++...+ |.+ .....++.-
T Consensus 265 ~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~l-p~~-r~~~~av~~ 342 (376)
T PRK14131 265 SSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGEL-PQG-LAYGVSVSW 342 (376)
T ss_pred CcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcC-CCC-ccceEEEEe
Confidence 1 011 35678888766521100 1234555555889876543 222 111223334
Q ss_pred CCEEEEEeeC-------CeEEEEECCCCcEE
Q 038747 312 NNAVLMESDN-------GTLLLYDLIVEEVR 335 (401)
Q Consensus 312 ~~~il~~~~~-------~~l~~yd~~t~~~~ 335 (401)
+++|++..+. ..+..|+++++++.
T Consensus 343 ~~~iyv~GG~~~~~~~~~~v~~~~~~~~~~~ 373 (376)
T PRK14131 343 NNGVLLIGGETAGGKAVSDVTLLSWDGKKLT 373 (376)
T ss_pred CCEEEEEcCCCCCCcEeeeEEEEEEcCCEEE
Confidence 6788777432 24677777766554
No 24
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=97.59 E-value=0.0044 Score=58.28 Aligned_cols=110 Identities=8% Similarity=-0.001 Sum_probs=67.6
Q ss_pred ceEEEccccccc----cccCCCCCCCCCcceeeeeeEEEEEeCCCCCeEEEEEEEEeccccCCCCCcceEEEEEcCCCCc
Q 038747 119 LIFLWNPATKEC----RTLPNYSNFLPTCATFLYENAIFGLDHTSGDYKVVFICELWNEQIEAPYEHSLVAIYTSTTDSW 194 (401)
Q Consensus 119 ~~~V~NP~T~~~----~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~vyss~t~~W 194 (401)
.++.+|+.+++| ..+|+++.... ... +..++ =+|..++..... .....+++|+..++.|
T Consensus 89 ~v~~~d~~~~~w~~~~~~~~~lp~~~~-----~~~--~~~~~-----~~iYv~GG~~~~-----~~~~~v~~yd~~~~~W 151 (323)
T TIGR03548 89 SVYRITLDESKEELICETIGNLPFTFE-----NGS--ACYKD-----GTLYVGGGNRNG-----KPSNKSYLFNLETQEW 151 (323)
T ss_pred eEEEEEEcCCceeeeeeEcCCCCcCcc-----Cce--EEEEC-----CEEEEEeCcCCC-----ccCceEEEEcCCCCCe
Confidence 677889999887 67777764311 011 11111 245555432111 1245789999999999
Q ss_pred cccCCCCcccceeeeCCCceeEECceEEEEEeecCCCCccEEEEEEcCCceEeEec
Q 038747 195 RVSKGNVEWIPYDFKSHFKSTNLNGVFYWLVSRDDGDHSNIMLSFHISDEEFREIE 250 (401)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~Il~fD~~~e~~~~i~ 250 (401)
+.+... |.........+.++|.+|-+.... +.....+.+||+.+++|..++
T Consensus 152 ~~~~~~----p~~~r~~~~~~~~~~~iYv~GG~~-~~~~~~~~~yd~~~~~W~~~~ 202 (323)
T TIGR03548 152 FELPDF----PGEPRVQPVCVKLQNELYVFGGGS-NIAYTDGYKYSPKKNQWQKVA 202 (323)
T ss_pred eECCCC----CCCCCCcceEEEECCEEEEEcCCC-CccccceEEEecCCCeeEECC
Confidence 988643 211112234568899999887543 212234689999999999875
No 25
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=8.6e-05 Score=66.39 Aligned_cols=41 Identities=32% Similarity=0.548 Sum_probs=38.0
Q ss_pred ccCCCCHHHHHHHHhcCChhhhhhhhccchhhhcccCChhh
Q 038747 9 SSMLMPEDVRLEILSRLPVKSLMRLRCVCKSWYALIENPKF 49 (401)
Q Consensus 9 ~~~~LP~Dll~~IL~rLP~~sl~r~r~VcK~W~~li~~~~F 49 (401)
.|..||||++..||+.||.|+|+++..|||+|+++-++...
T Consensus 97 ~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~l 137 (419)
T KOG2120|consen 97 SWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESL 137 (419)
T ss_pred CcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccc
Confidence 47899999999999999999999999999999999887654
No 26
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=97.42 E-value=0.006 Score=53.68 Aligned_cols=210 Identities=10% Similarity=0.049 Sum_probs=115.1
Q ss_pred ceEEEccccccccccCCCCCCCC-Ccceee--eeeEE---EEEeCCCCCeEEEEEEEEeccccCCCCCcceEEEEEcCCC
Q 038747 119 LIFLWNPATKECRTLPNYSNFLP-TCATFL--YENAI---FGLDHTSGDYKVVFICELWNEQIEAPYEHSLVAIYTSTTD 192 (401)
Q Consensus 119 ~~~V~NP~T~~~~~LP~~~~~~~-~~~~~~--~~~~~---~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~vyss~t~ 192 (401)
.+.|.|-.+-+|..+|+.-.+.. ++.+.. +..+| ..| +=|+...+... + .........-|+.+|+
T Consensus 45 DVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y-----~d~~yvWGGRN-D---~egaCN~Ly~fDp~t~ 115 (392)
T KOG4693|consen 45 DVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEY-----QDKAYVWGGRN-D---DEGACNLLYEFDPETN 115 (392)
T ss_pred eeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEE-----cceEEEEcCcc-C---cccccceeeeeccccc
Confidence 78899999999999998422100 000000 00111 111 11333332211 1 1234567788999999
Q ss_pred CccccCCCCcccceeeeCCCceeEECceEEEEEeecC--CCCccEEEEEEcCCceEeEecC---CCCCCCCCceeEEEcC
Q 038747 193 SWRVSKGNVEWIPYDFKSHFKSTNLNGVFYWLVSRDD--GDHSNIMLSFHISDEEFREIER---PRIPYSSHESLGLFNN 267 (401)
Q Consensus 193 ~W~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~--~~~~~~Il~fD~~~e~~~~i~l---P~~~~~~~~~l~~~~g 267 (401)
.|+..+.. ..+|-. ...-++++++..+|-...-.. ......+.+||+.+.+|+.+.. |+.-.+.+. ..+++|
T Consensus 116 ~W~~p~v~-G~vPga-RDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~-a~~~~~ 192 (392)
T KOG4693|consen 116 VWKKPEVE-GFVPGA-RDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPPRWRDFHT-ASVIDG 192 (392)
T ss_pred ccccccee-eecCCc-cCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccCCCchhhhhhh-hhhccc
Confidence 99987643 112221 122367778888887764332 2234578999999999999854 554333222 233444
Q ss_pred eEEEEee----------cCCCCeEEEEEEcC--CcEEEEEEEcCCCC-cccceEEeeCCEEEEEee--------CCeEEE
Q 038747 268 SVSLLHF----------DKSSHYIDIWLMSD--MNWIQQFAIGPFLG-VMSPRGIWKNNAVLMESD--------NGTLLL 326 (401)
Q Consensus 268 ~L~~~~~----------~~~~~~l~IW~l~~--~~W~~~~~i~~~~~-~~~p~~~~~~~~il~~~~--------~~~l~~ 326 (401)
...++.. -.+.-.-+|-.|+- +.|.+-..-...++ ..+.-.+.-+|++++..+ -..|+.
T Consensus 193 ~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvYng~~Y~FGGYng~ln~HfndLy~ 272 (392)
T KOG4693|consen 193 MMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHSTFVYNGKMYMFGGYNGTLNVHFNDLYC 272 (392)
T ss_pred eEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCcccccceEEEcceEEEecccchhhhhhhcceee
Confidence 4443331 01111123444444 88988643222221 222233344788876632 235999
Q ss_pred EECCCCcEEEEeec
Q 038747 327 YDLIVEEVRDLGRF 340 (401)
Q Consensus 327 yd~~t~~~~~v~~~ 340 (401)
||++|..|+.|...
T Consensus 273 FdP~t~~W~~I~~~ 286 (392)
T KOG4693|consen 273 FDPKTSMWSVISVR 286 (392)
T ss_pred cccccchheeeecc
Confidence 99999999999887
No 27
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=97.39 E-value=0.0054 Score=55.80 Aligned_cols=42 Identities=29% Similarity=0.488 Sum_probs=37.8
Q ss_pred CCCC----HHHHHHHHhcCChhhhhhhhccchhhhcccCChhhHHh
Q 038747 11 MLMP----EDVRLEILSRLPVKSLMRLRCVCKSWYALIENPKFISK 52 (401)
Q Consensus 11 ~~LP----~Dll~~IL~rLP~~sl~r~r~VcK~W~~li~~~~F~~~ 52 (401)
..|| +++.+.||+.|...+|..|..|||+|+++++++-.-++
T Consensus 76 ~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WKk 121 (499)
T KOG0281|consen 76 TALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWKK 121 (499)
T ss_pred HhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHHH
Confidence 4688 99999999999999999999999999999999865544
No 28
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=97.38 E-value=0.0028 Score=55.71 Aligned_cols=138 Identities=12% Similarity=0.224 Sum_probs=87.6
Q ss_pred cceEEEEEcCCCCccccCCCCcccceeeeCCCceeEECceEEEEEeecC---------CCCccEEEEEEcCCceEeEecC
Q 038747 181 HSLVAIYTSTTDSWRVSKGNVEWIPYDFKSHFKSTNLNGVFYWLVSRDD---------GDHSNIMLSFHISDEEFREIER 251 (401)
Q Consensus 181 ~~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~---------~~~~~~Il~fD~~~e~~~~i~l 251 (401)
...+++++..|-.||.+... ..|-.+..--.++.++|.+|-...+.. ....+.|++||+.++.|...+-
T Consensus 156 S~d~h~ld~~TmtWr~~~Tk--g~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~ 233 (392)
T KOG4693|consen 156 SQDTHVLDFATMTWREMHTK--GDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPE 233 (392)
T ss_pred hccceeEeccceeeeehhcc--CCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCC
Confidence 34578888899999998765 233333333467888999999876553 1234789999999999988632
Q ss_pred -CCCCCCCC-ceeEEEcCeEEEEee---cCCCCeEEEEEEcC--CcEEEEEEEcCCCC-cccceEEeeCCEEEEEee
Q 038747 252 -PRIPYSSH-ESLGLFNNSVSLLHF---DKSSHYIDIWLMSD--MNWIQQFAIGPFLG-VMSPRGIWKNNAVLMESD 320 (401)
Q Consensus 252 -P~~~~~~~-~~l~~~~g~L~~~~~---~~~~~~l~IW~l~~--~~W~~~~~i~~~~~-~~~p~~~~~~~~il~~~~ 320 (401)
|....+.. -...+++|++.++.. ..+..--++|..+- ..|.++..-+..+. ..+-.++..++++++..+
T Consensus 234 ~~~~P~GRRSHS~fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~~Gk~P~aRRRqC~~v~g~kv~LFGG 310 (392)
T KOG4693|consen 234 NTMKPGGRRSHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISVRGKYPSARRRQCSVVSGGKVYLFGG 310 (392)
T ss_pred CCcCCCcccccceEEEcceEEEecccchhhhhhhcceeecccccchheeeeccCCCCCcccceeEEEECCEEEEecC
Confidence 22111111 127788999887751 12333457899887 78998664332221 234455556778877643
No 29
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=97.24 E-value=0.0083 Score=56.03 Aligned_cols=155 Identities=14% Similarity=0.099 Sum_probs=90.3
Q ss_pred eEEEEEcCCCCccccCCCCcccceee----eCCCceeEECceEEEEEeecCCCCccEEEEEEcCCceEeEecCCCCC--C
Q 038747 183 LVAIYTSTTDSWRVSKGNVEWIPYDF----KSHFKSTNLNGVFYWLVSRDDGDHSNIMLSFHISDEEFREIERPRIP--Y 256 (401)
Q Consensus 183 ~~~vyss~t~~W~~~~~~~~~~~~~~----~~~~~~v~~~G~lywl~~~~~~~~~~~Il~fD~~~e~~~~i~lP~~~--~ 256 (401)
-..+|+..|+.|..+.....+.|..- .....-+.++| +|=.... ....+-+.+||+.+-+|+.+..+... .
T Consensus 155 D~W~fd~~trkweql~~~g~PS~RSGHRMvawK~~lilFGG-Fhd~nr~--y~YyNDvy~FdLdtykW~Klepsga~Ptp 231 (521)
T KOG1230|consen 155 DLWLFDLKTRKWEQLEFGGGPSPRSGHRMVAWKRQLILFGG-FHDSNRD--YIYYNDVYAFDLDTYKWSKLEPSGAGPTP 231 (521)
T ss_pred heeeeeeccchheeeccCCCCCCCccceeEEeeeeEEEEcc-eecCCCc--eEEeeeeEEEeccceeeeeccCCCCCCCC
Confidence 46789999999999987532222210 00111122222 2211111 11225789999999999999765421 1
Q ss_pred CCCceeEEE-cCeEEEEe----------ecCCCCeEEEEEEcC-------CcEEEEEEEc--CCCCcccceEEeeCCEEE
Q 038747 257 SSHESLGLF-NNSVSLLH----------FDKSSHYIDIWLMSD-------MNWIQQFAIG--PFLGVMSPRGIWKNNAVL 316 (401)
Q Consensus 257 ~~~~~l~~~-~g~L~~~~----------~~~~~~~l~IW~l~~-------~~W~~~~~i~--~~~~~~~p~~~~~~~~il 316 (401)
.+...+.+. .|.+.++. .+.+...-++|.|+- -.|.++..++ |.+-....++++++++-+
T Consensus 232 RSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal 311 (521)
T KOG1230|consen 232 RSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKAL 311 (521)
T ss_pred CCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEecCCceE
Confidence 112225555 77776654 134455678999986 3588876655 444333447777765543
Q ss_pred EEee---------------CCeEEEEECCCCcEEEEeec
Q 038747 317 MESD---------------NGTLLLYDLIVEEVRDLGRF 340 (401)
Q Consensus 317 ~~~~---------------~~~l~~yd~~t~~~~~v~~~ 340 (401)
+..+ ...|+.||+..++|.+.++.
T Consensus 312 ~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~qlq 350 (521)
T KOG1230|consen 312 FFGGVCDLEEEEESLSGEFFNDLYFFDLTRNRWSEGQLQ 350 (521)
T ss_pred EecceecccccchhhhhhhhhhhhheecccchhhHhhhc
Confidence 3311 12489999999999887665
No 30
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=96.89 E-value=0.051 Score=51.57 Aligned_cols=154 Identities=9% Similarity=0.043 Sum_probs=87.1
Q ss_pred ceEEEEEc--CCCCccccCCCCcccceeeeCCCceeEECceEEEEEeecCCC------CccEEEEEEcCCceEeEecCCC
Q 038747 182 SLVAIYTS--TTDSWRVSKGNVEWIPYDFKSHFKSTNLNGVFYWLVSRDDGD------HSNIMLSFHISDEEFREIERPR 253 (401)
Q Consensus 182 ~~~~vyss--~t~~W~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~------~~~~Il~fD~~~e~~~~i~lP~ 253 (401)
..+.+|+. .++.|+..... |.........+.++|.+|-+....... ....+-+||+.+.+|+.+..|.
T Consensus 29 ~~~~~~d~~~~~~~W~~l~~~----p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~ 104 (346)
T TIGR03547 29 TSWYKLDLKKPSKGWQKIADF----PGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRS 104 (346)
T ss_pred CeeEEEECCCCCCCceECCCC----CCCCcccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCC
Confidence 35778886 46889987643 211122336788999999887643110 1246889999999999986332
Q ss_pred CCCCCCce-eEEEcCeEEEEeecCCC-----------------------------------CeEEEEEEcC--CcEEEEE
Q 038747 254 IPYSSHES-LGLFNNSVSLLHFDKSS-----------------------------------HYIDIWLMSD--MNWIQQF 295 (401)
Q Consensus 254 ~~~~~~~~-l~~~~g~L~~~~~~~~~-----------------------------------~~l~IW~l~~--~~W~~~~ 295 (401)
+....... +.+.+|+|.++.-.... ..-.+|+.+- ..|+...
T Consensus 105 p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~ 184 (346)
T TIGR03547 105 PVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLG 184 (346)
T ss_pred CCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECc
Confidence 22111111 23578888766511100 0124666654 8899865
Q ss_pred EEcCCCCcccceEEeeCCEEEEEeeC-------CeEEEEE--CCCCcEEEEeec
Q 038747 296 AIGPFLGVMSPRGIWKNNAVLMESDN-------GTLLLYD--LIVEEVRDLGRF 340 (401)
Q Consensus 296 ~i~~~~~~~~p~~~~~~~~il~~~~~-------~~l~~yd--~~t~~~~~v~~~ 340 (401)
.+.... ....-.+.-+++|++..+. ..+..|| +++++|..+...
T Consensus 185 ~~p~~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m 237 (346)
T TIGR03547 185 ENPFLG-TAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPL 237 (346)
T ss_pred cCCCCc-CCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCC
Confidence 432111 1222223346788776431 1244455 567788877654
No 31
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=96.44 E-value=0.34 Score=48.17 Aligned_cols=180 Identities=10% Similarity=0.053 Sum_probs=106.5
Q ss_pred eEEEEEcCCCCccccCCCCcccceeeeCCCceeEECceEEEEEeecC-CCCccEEEEEEcCCceEeEecCCCC-CCCC-C
Q 038747 183 LVAIYTSTTDSWRVSKGNVEWIPYDFKSHFKSTNLNGVFYWLVSRDD-GDHSNIMLSFHISDEEFREIERPRI-PYSS-H 259 (401)
Q Consensus 183 ~~~vyss~t~~W~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~-~~~~~~Il~fD~~~e~~~~i~lP~~-~~~~-~ 259 (401)
.+.+++.++..|....... ..|. .......+.++..||-+..... ......|.+||+.+.+|..+..-.. .... .
T Consensus 89 dl~~~d~~~~~w~~~~~~g-~~p~-~r~g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~ 166 (482)
T KOG0379|consen 89 DLYVLDLESQLWTKPAATG-DEPS-PRYGHSLSAVGDKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAG 166 (482)
T ss_pred eeEEeecCCcccccccccC-CCCC-cccceeEEEECCeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCccc
Confidence 4888888999998776542 1221 1223366778888888765542 2223589999999999999854221 1111 1
Q ss_pred ceeEEEcCeEEEEee-cCCC-CeEEEEEEcC--CcEEEEEEEcCCCC-cccc-eEEeeCCEEEEEeeC------CeEEEE
Q 038747 260 ESLGLFNNSVSLLHF-DKSS-HYIDIWLMSD--MNWIQQFAIGPFLG-VMSP-RGIWKNNAVLMESDN------GTLLLY 327 (401)
Q Consensus 260 ~~l~~~~g~L~~~~~-~~~~-~~l~IW~l~~--~~W~~~~~i~~~~~-~~~p-~~~~~~~~il~~~~~------~~l~~y 327 (401)
-.+++.+.+|.++.- .... ..-++|+++- ..|.++.+.++.+. .+.+ +.+.++..+++.... ..+..+
T Consensus 167 Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~l 246 (482)
T KOG0379|consen 167 HSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSPRYGHAMVVVGNKLLVFGGGDDGDVYLNDVHIL 246 (482)
T ss_pred ceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCCCCCceEEEECCeEEEEeccccCCceecceEee
Confidence 125666667766652 1222 5678999987 77999988774431 2233 444444444443322 248999
Q ss_pred ECCCCcEEEEeeccC-CCCCceEEEEEEecceeeCCCc
Q 038747 328 DLIVEEVRDLGRFTR-GTLGTAILTYCYKESLVRLKRV 364 (401)
Q Consensus 328 d~~t~~~~~v~~~~~-~~~~~~~~~~~y~eslv~~~~~ 364 (401)
|+.+.+|+.+...+. ..+...+......+.++-+++.
T Consensus 247 dl~~~~W~~~~~~g~~p~~R~~h~~~~~~~~~~l~gG~ 284 (482)
T KOG0379|consen 247 DLSTWEWKLLPTGGDLPSPRSGHSLTVSGDHLLLFGGG 284 (482)
T ss_pred ecccceeeeccccCCCCCCcceeeeEEECCEEEEEcCC
Confidence 999999987665521 1222234444555555555544
No 32
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=96.27 E-value=0.3 Score=48.56 Aligned_cols=206 Identities=10% Similarity=0.065 Sum_probs=116.3
Q ss_pred ceEEEccccccccccCCCCCCCCCcceeeeeeEEEEEeCCCCCeEEEEEEEEeccccCCCCCcceEEEEEcCCCCccccC
Q 038747 119 LIFLWNPATKECRTLPNYSNFLPTCATFLYENAIFGLDHTSGDYKVVFICELWNEQIEAPYEHSLVAIYTSTTDSWRVSK 198 (401)
Q Consensus 119 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~vyss~t~~W~~~~ 198 (401)
.++|+|-.++.|......... |.+ .........+ + +++.++..... ......+..|+..|+.|+...
T Consensus 89 dl~~~d~~~~~w~~~~~~g~~-p~~-r~g~~~~~~~------~-~l~lfGG~~~~----~~~~~~l~~~d~~t~~W~~l~ 155 (482)
T KOG0379|consen 89 DLYVLDLESQLWTKPAATGDE-PSP-RYGHSLSAVG------D-KLYLFGGTDKK----YRNLNELHSLDLSTRTWSLLS 155 (482)
T ss_pred eeEEeecCCcccccccccCCC-CCc-ccceeEEEEC------C-eEEEEccccCC----CCChhheEeccCCCCcEEEec
Confidence 499999999888876554322 110 1111222221 2 23333321110 112568999999999999887
Q ss_pred CCCcccceeeeCCCceeEECceEEEEEeecCCC-CccEEEEEEcCCceEeEecCCCCCCC-CCc-eeEEEcCeEEEEeec
Q 038747 199 GNVEWIPYDFKSHFKSTNLNGVFYWLVSRDDGD-HSNIMLSFHISDEEFREIERPRIPYS-SHE-SLGLFNNSVSLLHFD 275 (401)
Q Consensus 199 ~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~-~~~~Il~fD~~~e~~~~i~lP~~~~~-~~~-~l~~~~g~L~~~~~~ 275 (401)
......+. ......+..+..+|......... ....+.+||+.+.+|..+........ ..+ .+++.+++++++...
T Consensus 156 ~~~~~P~~--r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~ 233 (482)
T KOG0379|consen 156 PTGDPPPP--RAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSPRYGHAMVVVGNKLLVFGGG 233 (482)
T ss_pred CcCCCCCC--cccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCCCCCceEEEECCeEEEEecc
Confidence 65321111 12224556666777665444211 35789999999999999876432222 122 277778888866522
Q ss_pred C--CCCeEEEEEEcC--CcEEEEEEEc--CCCCcccceEEeeCCEEEEEe--------eCCeEEEEECCCCcEEEEeec
Q 038747 276 K--SSHYIDIWLMSD--MNWIQQFAIG--PFLGVMSPRGIWKNNAVLMES--------DNGTLLLYDLIVEEVRDLGRF 340 (401)
Q Consensus 276 ~--~~~~l~IW~l~~--~~W~~~~~i~--~~~~~~~p~~~~~~~~il~~~--------~~~~l~~yd~~t~~~~~v~~~ 340 (401)
. ...-=++|.|+- ..|.++.... |.+....... ..+..+++.. .-+.++.||++++.|..+...
T Consensus 234 ~~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~~~-~~~~~~~l~gG~~~~~~~~l~~~~~l~~~~~~w~~~~~~ 311 (482)
T KOG0379|consen 234 DDGDVYLNDVHILDLSTWEWKLLPTGGDLPSPRSGHSLT-VSGDHLLLFGGGTDPKQEPLGDLYGLDLETLVWSKVESV 311 (482)
T ss_pred ccCCceecceEeeecccceeeeccccCCCCCCcceeeeE-EECCEEEEEcCCcccccccccccccccccccceeeeecc
Confidence 2 223347999987 7787544322 2222333333 3334444432 134588999999999888766
No 33
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=95.55 E-value=0.0074 Score=54.51 Aligned_cols=45 Identities=22% Similarity=0.513 Sum_probs=39.0
Q ss_pred cCCCCHHHHHHHHhcCC-----hhhhhhhhccchhhhcccCChhhHHhhh
Q 038747 10 SMLMPEDVRLEILSRLP-----VKSLMRLRCVCKSWYALIENPKFISKHL 54 (401)
Q Consensus 10 ~~~LP~Dll~~IL~rLP-----~~sl~r~r~VcK~W~~li~~~~F~~~~~ 54 (401)
...||||++.+||.++= ..+|.++.+|||.|+-...+|.|-+...
T Consensus 107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC 156 (366)
T KOG2997|consen 107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLAC 156 (366)
T ss_pred hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHH
Confidence 35799999999998765 4999999999999999999998876643
No 34
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=94.71 E-value=1.8 Score=38.85 Aligned_cols=121 Identities=10% Similarity=0.169 Sum_probs=75.1
Q ss_pred CCCceeEECceEEEEEeecCCCCccEEEEEEcCCceEe-EecCCCCCCCCC----------ceeEEEcCeEE-EEeecCC
Q 038747 210 SHFKSTNLNGVFYWLVSRDDGDHSNIMLSFHISDEEFR-EIERPRIPYSSH----------ESLGLFNNSVS-LLHFDKS 277 (401)
Q Consensus 210 ~~~~~v~~~G~lywl~~~~~~~~~~~Il~fD~~~e~~~-~i~lP~~~~~~~----------~~l~~~~g~L~-~~~~~~~ 277 (401)
..+..|+.||.+|+-.... ..|+.||+.+++-. ...||....... ..+.+-+..|- ++.....
T Consensus 70 ~GtG~vVYngslYY~~~~s-----~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~ 144 (250)
T PF02191_consen 70 QGTGHVVYNGSLYYNKYNS-----RNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDN 144 (250)
T ss_pred ccCCeEEECCcEEEEecCC-----ceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCC
Confidence 3456788899999987643 59999999999998 778888654311 11666666665 4443334
Q ss_pred CCeEEEEEEcC------CcEEEEEEEcCCCCcccceEEeeCCEEEEEeeC-----CeEEEEECCCCcEEEEeec
Q 038747 278 SHYIDIWLMSD------MNWIQQFAIGPFLGVMSPRGIWKNNAVLMESDN-----GTLLLYDLIVEEVRDLGRF 340 (401)
Q Consensus 278 ~~~l~IW~l~~------~~W~~~~~i~~~~~~~~p~~~~~~~~il~~~~~-----~~l~~yd~~t~~~~~v~~~ 340 (401)
...+.|=.|+. ..|.--+ +.+.... +|--.|.++..... .-.++||..+++-+.+.+.
T Consensus 145 ~g~ivvskld~~tL~v~~tw~T~~---~k~~~~n--aFmvCGvLY~~~s~~~~~~~I~yafDt~t~~~~~~~i~ 213 (250)
T PF02191_consen 145 NGNIVVSKLDPETLSVEQTWNTSY---PKRSAGN--AFMVCGVLYATDSYDTRDTEIFYAFDTYTGKEEDVSIP 213 (250)
T ss_pred CCcEEEEeeCcccCceEEEEEecc---Cchhhcc--eeeEeeEEEEEEECCCCCcEEEEEEECCCCceeceeee
Confidence 44577777776 4555321 1111111 12224777665432 2368999998888777665
No 35
>PF13964 Kelch_6: Kelch motif
Probab=94.05 E-value=0.17 Score=32.86 Aligned_cols=39 Identities=15% Similarity=0.292 Sum_probs=31.8
Q ss_pred CceeEECceEEEEEeecC-CCCccEEEEEEcCCceEeEec
Q 038747 212 FKSTNLNGVFYWLVSRDD-GDHSNIMLSFHISDEEFREIE 250 (401)
Q Consensus 212 ~~~v~~~G~lywl~~~~~-~~~~~~Il~fD~~~e~~~~i~ 250 (401)
...+.++|.+|.+..... ......+..||+++.+|..++
T Consensus 5 ~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~ 44 (50)
T PF13964_consen 5 HSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLP 44 (50)
T ss_pred CEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECC
Confidence 367899999999886653 234579999999999999984
No 36
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=93.70 E-value=1.4 Score=41.74 Aligned_cols=147 Identities=11% Similarity=0.196 Sum_probs=87.0
Q ss_pred eEEEEEcCCCCccccCCCCcccceeeeCCCceeEEC-ceEEEEEeecC-----CC-CccEEEEEEcCCceEeEecCCCCC
Q 038747 183 LVAIYTSTTDSWRVSKGNVEWIPYDFKSHFKSTNLN-GVFYWLVSRDD-----GD-HSNIMLSFHISDEEFREIERPRIP 255 (401)
Q Consensus 183 ~~~vyss~t~~W~~~~~~~~~~~~~~~~~~~~v~~~-G~lywl~~~~~-----~~-~~~~Il~fD~~~e~~~~i~lP~~~ 255 (401)
....|+.+++.|+.+..+..+.|.. ...+|.+- |.+|....... .. ...-+..||+.+.+|..+.++...
T Consensus 99 dLy~Yn~k~~eWkk~~spn~P~pRs---shq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~P 175 (521)
T KOG1230|consen 99 DLYSYNTKKNEWKKVVSPNAPPPRS---SHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGP 175 (521)
T ss_pred eeeEEeccccceeEeccCCCcCCCc---cceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCCCC
Confidence 4678999999999988764444432 12344444 64444433221 11 124688999999999999987755
Q ss_pred CCCCc-eeEEEcCeEEEEe-e-cCCCCe---EEEEEEcC--CcEEEEEEEc--CCCCcccceEEeeCCEEEEEee-----
Q 038747 256 YSSHE-SLGLFNNSVSLLH-F-DKSSHY---IDIWLMSD--MNWIQQFAIG--PFLGVMSPRGIWKNNAVLMESD----- 320 (401)
Q Consensus 256 ~~~~~-~l~~~~g~L~~~~-~-~~~~~~---l~IW~l~~--~~W~~~~~i~--~~~~~~~p~~~~~~~~il~~~~----- 320 (401)
....+ ++++...+|.++. . +..... -+||+.+- ..|.++..=+ |.+--..-+.+.+.|.|++..+
T Consensus 176 S~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~ 255 (521)
T KOG1230|consen 176 SPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQR 255 (521)
T ss_pred CCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhh
Confidence 44443 3777888877655 1 122221 36777765 8999976522 3221111244455666666532
Q ss_pred ----------CCeEEEEECCCC
Q 038747 321 ----------NGTLLLYDLIVE 332 (401)
Q Consensus 321 ----------~~~l~~yd~~t~ 332 (401)
...++..+++++
T Consensus 256 ~kK~~dKG~~hsDmf~L~p~~~ 277 (521)
T KOG1230|consen 256 VKKDVDKGTRHSDMFLLKPEDG 277 (521)
T ss_pred hhhhhhcCceeeeeeeecCCcC
Confidence 124788888873
No 37
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=93.50 E-value=4.9 Score=35.33 Aligned_cols=188 Identities=11% Similarity=0.076 Sum_probs=90.4
Q ss_pred ccceEEEe-eCCceEEEccccccccccCCCCCCCCCcceeeeeeEEEEEeCCCCCeEEEEEEEEeccccCCCCCcceEEE
Q 038747 108 YDGIFCLC-DDSLIFLWNPATKECRTLPNYSNFLPTCATFLYENAIFGLDHTSGDYKVVFICELWNEQIEAPYEHSLVAI 186 (401)
Q Consensus 108 ~~GLl~~~-~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~v 186 (401)
.+|.+.+. ....++.+|+.|++...--..+.. ... . ... ..=+|++.. . .-.+..
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~----~~~--~--~~~-----~~~~v~v~~----~-------~~~l~~ 90 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGP----ISG--A--PVV-----DGGRVYVGT----S-------DGSLYA 90 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSSC----GGS--G--EEE-----ETTEEEEEE----T-------TSEEEE
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeecccc----ccc--e--eee-----ccccccccc----c-------eeeeEe
Confidence 56777666 566899999999986532221111 000 0 011 111222221 0 125566
Q ss_pred EEcCCC--Cccc-cCCCCcccceeeeCCCceeEECceEEEEEeecCCCCccEEEEEEcCCceE--eE-ecCCCCCCCC--
Q 038747 187 YTSTTD--SWRV-SKGNVEWIPYDFKSHFKSTNLNGVFYWLVSRDDGDHSNIMLSFHISDEEF--RE-IERPRIPYSS-- 258 (401)
Q Consensus 187 yss~t~--~W~~-~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~Il~fD~~~e~~--~~-i~lP~~~~~~-- 258 (401)
++..+| .|+. .... +..+ ..........++.+|.....+ .|.++|+.+++- .. +..|......
T Consensus 91 ~d~~tG~~~W~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g------~l~~~d~~tG~~~w~~~~~~~~~~~~~~~ 161 (238)
T PF13360_consen 91 LDAKTGKVLWSIYLTSS-PPAG--VRSSSSPAVDGDRLYVGTSSG------KLVALDPKTGKLLWKYPVGEPRGSSPISS 161 (238)
T ss_dssp EETTTSCEEEEEEE-SS-CTCS--TB--SEEEEETTEEEEEETCS------EEEEEETTTTEEEEEEESSTT-SS--EEE
T ss_pred cccCCcceeeeeccccc-cccc--cccccCceEecCEEEEEeccC------cEEEEecCCCcEEEEeecCCCCCCcceee
Confidence 665555 5773 3221 1111 111223444466777665454 899999887654 33 2222211110
Q ss_pred ----CceeEEEcCeEEEEeecCCCCeEEEEEEcCC--cEEEEEEEcCCCCcccceEEeeCCEEEEEeeCCeEEEEECCCC
Q 038747 259 ----HESLGLFNNSVSLLHFDKSSHYIDIWLMSDM--NWIQQFAIGPFLGVMSPRGIWKNNAVLMESDNGTLLLYDLIVE 332 (401)
Q Consensus 259 ----~~~l~~~~g~L~~~~~~~~~~~l~IW~l~~~--~W~~~~~i~~~~~~~~p~~~~~~~~il~~~~~~~l~~yd~~t~ 332 (401)
...+...+|.+.+.. .....+.+ -++.+ .|.+. +.. . .......++.+++....++++++|++|+
T Consensus 162 ~~~~~~~~~~~~~~v~~~~--~~g~~~~~-d~~tg~~~w~~~--~~~---~-~~~~~~~~~~l~~~~~~~~l~~~d~~tG 232 (238)
T PF13360_consen 162 FSDINGSPVISDGRVYVSS--GDGRVVAV-DLATGEKLWSKP--ISG---I-YSLPSVDGGTLYVTSSDGRLYALDLKTG 232 (238)
T ss_dssp ETTEEEEEECCTTEEEEEC--CTSSEEEE-ETTTTEEEEEEC--SS----E-CECEECCCTEEEEEETTTEEEEEETTTT
T ss_pred ecccccceEEECCEEEEEc--CCCeEEEE-ECCCCCEEEEec--CCC---c-cCCceeeCCEEEEEeCCCEEEEEECCCC
Confidence 122344456554443 23333444 33332 36322 221 1 1112334566777677889999999999
Q ss_pred cEEEE
Q 038747 333 EVRDL 337 (401)
Q Consensus 333 ~~~~v 337 (401)
+..+.
T Consensus 233 ~~~W~ 237 (238)
T PF13360_consen 233 KVVWQ 237 (238)
T ss_dssp EEEEE
T ss_pred CEEeE
Confidence 97653
No 38
>smart00284 OLF Olfactomedin-like domains.
Probab=92.30 E-value=6.5 Score=35.32 Aligned_cols=120 Identities=13% Similarity=0.162 Sum_probs=73.6
Q ss_pred CCceeEECceEEEEEeecCCCCccEEEEEEcCCceEeEe-cCCCCCCC----------CCceeEEEcCeEE-EEeecCCC
Q 038747 211 HFKSTNLNGVFYWLVSRDDGDHSNIMLSFHISDEEFREI-ERPRIPYS----------SHESLGLFNNSVS-LLHFDKSS 278 (401)
Q Consensus 211 ~~~~v~~~G~lywl~~~~~~~~~~~Il~fD~~~e~~~~i-~lP~~~~~----------~~~~l~~~~g~L~-~~~~~~~~ 278 (401)
.+..|+.||.+|+-.... ..|+.||+.+++.... .+|..... .+..+++-+..|- ++......
T Consensus 76 GtG~VVYngslYY~~~~s-----~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~ 150 (255)
T smart00284 76 GTGVVVYNGSLYFNKFNS-----HDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNA 150 (255)
T ss_pred cccEEEECceEEEEecCC-----ccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCC
Confidence 356799999999965433 5899999999998644 46753211 0112777777776 55544555
Q ss_pred CeEEEEEEcC------CcEEEEEEEcCCCCcccceEEeeCCEEEEEee-----CCeEEEEECCCCcEEEEeec
Q 038747 279 HYIDIWLMSD------MNWIQQFAIGPFLGVMSPRGIWKNNAVLMESD-----NGTLLLYDLIVEEVRDLGRF 340 (401)
Q Consensus 279 ~~l~IW~l~~------~~W~~~~~i~~~~~~~~p~~~~~~~~il~~~~-----~~~l~~yd~~t~~~~~v~~~ 340 (401)
..|.|=.|+. ..|.-.+. .+.... +|--.|.++.... ..-.++||..|++-+.+.+.
T Consensus 151 g~ivvSkLnp~tL~ve~tW~T~~~---k~sa~n--aFmvCGvLY~~~s~~~~~~~I~yayDt~t~~~~~~~i~ 218 (255)
T smart00284 151 GKIVISKLNPATLTIENTWITTYN---KRSASN--AFMICGILYVTRSLGSKGEKVFYAYDTNTGKEGHLDIP 218 (255)
T ss_pred CCEEEEeeCcccceEEEEEEcCCC---cccccc--cEEEeeEEEEEccCCCCCcEEEEEEECCCCccceeeee
Confidence 7788888887 45554221 111111 1111367766532 22478899988876666554
No 39
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=91.64 E-value=10 Score=34.32 Aligned_cols=221 Identities=13% Similarity=0.072 Sum_probs=115.0
Q ss_pred ccccceEEEeeC--CceEEEccccccccccCCCCCCCCCccee------eeeeE--EE-EEeCCCCCeEEEEEEEEeccc
Q 038747 106 GPYDGIFCLCDD--SLIFLWNPATKECRTLPNYSNFLPTCATF------LYENA--IF-GLDHTSGDYKVVFICELWNEQ 174 (401)
Q Consensus 106 ~s~~GLl~~~~~--~~~~V~NP~T~~~~~LP~~~~~~~~~~~~------~~~~~--~~-g~d~~~~~ykVv~~~~~~~~~ 174 (401)
-+-+|-|-+... ..+-=.||.|++..+.|......|++... +.... ++ -+|+.+..++=+-+..
T Consensus 69 papdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~aI~R~dpkt~evt~f~lp~----- 143 (353)
T COG4257 69 PAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGLAIGRLDPKTLEVTRFPLPL----- 143 (353)
T ss_pred cCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcceeEEecCcccceEEeeccc-----
Confidence 355676766653 24445799999999988877654433111 11111 11 1344443333322221
Q ss_pred cCCCCCcceEEEEEcCCCCccccCCC------Cc--cc---ceeeeCCCceeE--ECceEEEEEeecCCCCccEEEEEEc
Q 038747 175 IEAPYEHSLVAIYTSTTDSWRVSKGN------VE--WI---PYDFKSHFKSTN--LNGVFYWLVSRDDGDHSNIMLSFHI 241 (401)
Q Consensus 175 ~~~~~~~~~~~vyss~t~~W~~~~~~------~~--~~---~~~~~~~~~~v~--~~G~lywl~~~~~~~~~~~Il~fD~ 241 (401)
+..+..+...||+-..+-|-.-..- +. .+ +...-....+++ -||.+|+-...+ +.|...|.
T Consensus 144 -~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG~gpyGi~atpdGsvwyaslag-----naiaridp 217 (353)
T COG4257 144 -EHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQGGGPYGICATPDGSVWYASLAG-----NAIARIDP 217 (353)
T ss_pred -ccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCCCCCCcceEECCCCcEEEEeccc-----cceEEccc
Confidence 1123577788899988888543211 00 00 000001123444 478988775444 58999999
Q ss_pred CCceEeEecCCCCCCCCCceeE-EEcCeEEEEeecCCCCeEEEEEEcCCcEEEEEEEcCCCCcccceEEeeCCEEEEE-e
Q 038747 242 SDEEFREIERPRIPYSSHESLG-LFNNSVSLLHFDKSSHYIDIWLMSDMNWIQQFAIGPFLGVMSPRGIWKNNAVLME-S 319 (401)
Q Consensus 242 ~~e~~~~i~lP~~~~~~~~~l~-~~~g~L~~~~~~~~~~~l~IW~l~~~~W~~~~~i~~~~~~~~p~~~~~~~~il~~-~ 319 (401)
.+..-.+++.|........++. .--|.+-..+ .....+.-.--...+|.. +.+.-.....-.+.+...|.+.+. .
T Consensus 218 ~~~~aev~p~P~~~~~gsRriwsdpig~~witt--wg~g~l~rfdPs~~sW~e-ypLPgs~arpys~rVD~~grVW~sea 294 (353)
T COG4257 218 FAGHAEVVPQPNALKAGSRRIWSDPIGRAWITT--WGTGSLHRFDPSVTSWIE-YPLPGSKARPYSMRVDRHGRVWLSEA 294 (353)
T ss_pred ccCCcceecCCCcccccccccccCccCcEEEec--cCCceeeEeCccccccee-eeCCCCCCCcceeeeccCCcEEeecc
Confidence 9998888999987433221111 1112221111 111111111111144543 333211111112556667788775 4
Q ss_pred eCCeEEEEECCCCcEEEEeec
Q 038747 320 DNGTLLLYDLIVEEVRDLGRF 340 (401)
Q Consensus 320 ~~~~l~~yd~~t~~~~~v~~~ 340 (401)
..+-+.-||+++.+++.+.+.
T Consensus 295 ~agai~rfdpeta~ftv~p~p 315 (353)
T COG4257 295 DAGAIGRFDPETARFTVLPIP 315 (353)
T ss_pred ccCceeecCcccceEEEecCC
Confidence 556799999999999998876
No 40
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=91.13 E-value=0.13 Score=48.60 Aligned_cols=42 Identities=29% Similarity=0.445 Sum_probs=36.7
Q ss_pred cCCccCCCCHHHHHHHHhcCChhhhhhhhccchhhhcccCCh
Q 038747 6 DVDSSMLMPEDVRLEILSRLPVKSLMRLRCVCKSWYALIENP 47 (401)
Q Consensus 6 ~~~~~~~LP~Dll~~IL~rLP~~sl~r~r~VcK~W~~li~~~ 47 (401)
+....-.||.+++..||+-|..+++.|++.+||.|+-+..|.
T Consensus 68 ~~~~~~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~ 109 (483)
T KOG4341|consen 68 NNSISRSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDG 109 (483)
T ss_pred cccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcc
Confidence 344556899999999999999999999999999999877654
No 41
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=90.67 E-value=0.96 Score=28.58 Aligned_cols=39 Identities=10% Similarity=0.204 Sum_probs=31.9
Q ss_pred CceeEECceEEEEEeecC-CCCccEEEEEEcCCceEeEec
Q 038747 212 FKSTNLNGVFYWLVSRDD-GDHSNIMLSFHISDEEFREIE 250 (401)
Q Consensus 212 ~~~v~~~G~lywl~~~~~-~~~~~~Il~fD~~~e~~~~i~ 250 (401)
...+.++|.+|-+..... ......+..||+.+.+|..++
T Consensus 5 ~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~ 44 (47)
T PF01344_consen 5 HAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELP 44 (47)
T ss_dssp EEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEE
T ss_pred CEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcC
Confidence 367899999999987663 345589999999999999873
No 42
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=90.22 E-value=9.5 Score=33.61 Aligned_cols=117 Identities=13% Similarity=0.170 Sum_probs=67.2
Q ss_pred EECceEEEEEeecCCCCccEEEEEEcCCceEeEecCCCCC---CCCC-ceeEEE--cC--eEE-EEee--cCCCCeEEEE
Q 038747 216 NLNGVFYWLVSRDDGDHSNIMLSFHISDEEFREIERPRIP---YSSH-ESLGLF--NN--SVS-LLHF--DKSSHYIDIW 284 (401)
Q Consensus 216 ~~~G~lywl~~~~~~~~~~~Il~fD~~~e~~~~i~lP~~~---~~~~-~~l~~~--~g--~L~-~~~~--~~~~~~l~IW 284 (401)
.+||-+ .+... ..+...|+.++++..++.|... .... ..++.- .+ ++. +... ......++|.
T Consensus 3 sCnGLl-c~~~~------~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~Vy 75 (230)
T TIGR01640 3 PCDGLI-CFSYG------KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQVY 75 (230)
T ss_pred ccceEE-EEecC------CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCCCCccEEEE
Confidence 467877 44332 3799999999999999766531 1110 111111 11 122 2211 1134577888
Q ss_pred EEcCCcEEEEEEEcCCCCcccceEEeeCCEEEEEee-CC-----eEEEEECCCCcEEE-Eeec
Q 038747 285 LMSDMNWIQQFAIGPFLGVMSPRGIWKNNAVLMESD-NG-----TLLLYDLIVEEVRD-LGRF 340 (401)
Q Consensus 285 ~l~~~~W~~~~~i~~~~~~~~p~~~~~~~~il~~~~-~~-----~l~~yd~~t~~~~~-v~~~ 340 (401)
.++.++|.......+....... ++.-+|.++.... .. .+++||++++++++ +...
T Consensus 76 s~~~~~Wr~~~~~~~~~~~~~~-~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P 137 (230)
T TIGR01640 76 TLGSNSWRTIECSPPHHPLKSR-GVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLP 137 (230)
T ss_pred EeCCCCccccccCCCCccccCC-eEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecC
Confidence 8888899987632111111222 4444787765532 11 69999999999995 6654
No 43
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=87.76 E-value=1.8 Score=27.74 Aligned_cols=39 Identities=21% Similarity=0.374 Sum_probs=30.7
Q ss_pred ceeEECceEEEEEee---cCCCCccEEEEEEcCCceEeEecC
Q 038747 213 KSTNLNGVFYWLVSR---DDGDHSNIMLSFHISDEEFREIER 251 (401)
Q Consensus 213 ~~v~~~G~lywl~~~---~~~~~~~~Il~fD~~~e~~~~i~l 251 (401)
..+.++|.+|..... ........+-.||+++.+|..++.
T Consensus 6 s~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~ 47 (49)
T PF07646_consen 6 SAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSP 47 (49)
T ss_pred EEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCC
Confidence 578889999988766 223445789999999999998754
No 44
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=87.74 E-value=25 Score=34.66 Aligned_cols=203 Identities=13% Similarity=0.120 Sum_probs=95.7
Q ss_pred ceEEEccccccccccCCCCCCCCCcceeeeeeEEEEEeCCCCCeEEEEEEEEeccccCCCCCcceEEEEEcCCC--Cccc
Q 038747 119 LIFLWNPATKECRTLPNYSNFLPTCATFLYENAIFGLDHTSGDYKVVFICELWNEQIEAPYEHSLVAIYTSTTD--SWRV 196 (401)
Q Consensus 119 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~vyss~t~--~W~~ 196 (401)
.+.|+|-+|+||. +|....+.|.+ ...+||.+|. =|+++++.... | ....=+.|.+... .|+.
T Consensus 58 ELHvYNTatnqWf-~PavrGDiPpg----cAA~GfvcdG----trilvFGGMvE---Y---GkYsNdLYELQasRWeWkr 122 (830)
T KOG4152|consen 58 ELHVYNTATNQWF-APAVRGDIPPG----CAAFGFVCDG----TRILVFGGMVE---Y---GKYSNDLYELQASRWEWKR 122 (830)
T ss_pred hhhhhccccceee-cchhcCCCCCc----hhhcceEecC----ceEEEEccEee---e---ccccchHHHhhhhhhhHhh
Confidence 7899999999997 34443333332 3455665553 35555543211 1 1334456666654 5666
Q ss_pred cCCCCc---ccceeeeCCCceeEECceEEEEEeecC-------C----CCccEEEEEEcCCce--EeEe----cCCCCCC
Q 038747 197 SKGNVE---WIPYDFKSHFKSTNLNGVFYWLVSRDD-------G----DHSNIMLSFHISDEE--FREI----ERPRIPY 256 (401)
Q Consensus 197 ~~~~~~---~~~~~~~~~~~~v~~~G~lywl~~~~~-------~----~~~~~Il~fD~~~e~--~~~i----~lP~~~~ 256 (401)
+....+ +.|+ .....+-+..+.+.|-+..-.+ . ....+|+-+-..++. |... .+|...+
T Consensus 123 lkp~~p~nG~pPC-PRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRE 201 (830)
T KOG4152|consen 123 LKPKTPKNGPPPC-PRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRE 201 (830)
T ss_pred cCCCCCCCCCCCC-CccCceeEEeccEeEEeccccccccCcccccchhhcceEEEEeccCCceEEEecccccCCCCCCcc
Confidence 543311 1121 1222234555667777643211 0 011234444333443 3321 2344332
Q ss_pred CCCceeEE-EcC----eEEEEeecCCCCeEEEEEEcC--CcEEEEEE--EcCCCC-cccceEEeeCCEEEEEee------
Q 038747 257 SSHESLGL-FNN----SVSLLHFDKSSHYIDIWLMSD--MNWIQQFA--IGPFLG-VMSPRGIWKNNAVLMESD------ 320 (401)
Q Consensus 257 ~~~~~l~~-~~g----~L~~~~~~~~~~~l~IW~l~~--~~W~~~~~--i~~~~~-~~~p~~~~~~~~il~~~~------ 320 (401)
. +..+.. -++ ++.+|.......-=++|.|+- -.|.|-.. +.|++. +.....+ ++++++..+
T Consensus 202 S-HTAViY~eKDs~~skmvvyGGM~G~RLgDLW~Ldl~Tl~W~kp~~~G~~PlPRSLHsa~~I--GnKMyvfGGWVPl~~ 278 (830)
T KOG4152|consen 202 S-HTAVIYTEKDSKKSKMVVYGGMSGCRLGDLWTLDLDTLTWNKPSLSGVAPLPRSLHSATTI--GNKMYVFGGWVPLVM 278 (830)
T ss_pred c-ceeEEEEeccCCcceEEEEcccccccccceeEEecceeecccccccCCCCCCcccccceee--cceeEEecceeeeec
Confidence 2 221222 122 233444323334457999987 78998543 224331 1111111 223322210
Q ss_pred --------------CCeEEEEECCCCcEEEEeec
Q 038747 321 --------------NGTLLLYDLIVEEVRDLGRF 340 (401)
Q Consensus 321 --------------~~~l~~yd~~t~~~~~v~~~ 340 (401)
...+-++|+.+.+|+.+-..
T Consensus 279 ~~~~~~~hekEWkCTssl~clNldt~~W~tl~~d 312 (830)
T KOG4152|consen 279 DDVKVATHEKEWKCTSSLACLNLDTMAWETLLMD 312 (830)
T ss_pred cccccccccceeeeccceeeeeecchheeeeeec
Confidence 12478889999999888654
No 45
>PF13964 Kelch_6: Kelch motif
Probab=86.66 E-value=1.1 Score=28.82 Aligned_cols=21 Identities=19% Similarity=0.347 Sum_probs=18.9
Q ss_pred CceEEEccccccccccCCCCC
Q 038747 118 SLIFLWNPATKECRTLPNYSN 138 (401)
Q Consensus 118 ~~~~V~NP~T~~~~~LP~~~~ 138 (401)
..+.++||.|++|..+|+++.
T Consensus 28 ~~v~~yd~~t~~W~~~~~mp~ 48 (50)
T PF13964_consen 28 NDVERYDPETNTWEQLPPMPT 48 (50)
T ss_pred ccEEEEcCCCCcEEECCCCCC
Confidence 478999999999999998875
No 46
>PF07762 DUF1618: Protein of unknown function (DUF1618); InterPro: IPR011676 The proteins of this entry are mainly hypothetical proteins expressed by Oryza sativa.
Probab=84.13 E-value=7.2 Score=31.06 Aligned_cols=65 Identities=14% Similarity=0.338 Sum_probs=46.7
Q ss_pred EEEEEEcCCc--eEeEecCCCCCCCCC------------ceeEEEcCeEEEEeec--------CCCCeEEEEEEcC----
Q 038747 235 IMLSFHISDE--EFREIERPRIPYSSH------------ESLGLFNNSVSLLHFD--------KSSHYIDIWLMSD---- 288 (401)
Q Consensus 235 ~Il~fD~~~e--~~~~i~lP~~~~~~~------------~~l~~~~g~L~~~~~~--------~~~~~l~IW~l~~---- 288 (401)
.|+..|+-.+ .++.|+||....... ..+.+.+|+|-++..+ ....++.+|.|..
T Consensus 7 GIL~CD~~~~~p~l~~vpLP~~~~~~~~~~~~~~~~~~~R~v~v~~G~ikfV~i~~~~~~~~~~~~~~vt~Wtl~~~~~~ 86 (131)
T PF07762_consen 7 GILFCDVFDDSPVLRFVPLPPPCPPNRRDDRPRGSPESYRDVGVSGGKIKFVEIDGYEDDGPPSGGWTVTTWTLKDPEGS 86 (131)
T ss_pred CEEEEECCCCCccEEEEeCCCccccCcccccccCCchhCceEEecCCCEEEEEEecccCCCcccCCcEEEEEEeccCCCC
Confidence 6888888655 688899988653211 1177888998755521 2466899999976
Q ss_pred -CcEEEEEEEcC
Q 038747 289 -MNWIQQFAIGP 299 (401)
Q Consensus 289 -~~W~~~~~i~~ 299 (401)
..|.+.+++..
T Consensus 87 ~~~W~~d~~v~~ 98 (131)
T PF07762_consen 87 SWEWKKDCEVDL 98 (131)
T ss_pred CCCEEEeEEEEh
Confidence 68999998873
No 47
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=83.00 E-value=41 Score=31.47 Aligned_cols=105 Identities=12% Similarity=0.109 Sum_probs=66.5
Q ss_pred ccEEEEEEcCCceEeEe---cCCCCCCCCCceeEEEcCeEE-EEeecCCCCeEEEEEEcC--CcEEEEEEEcCCCC-c--
Q 038747 233 SNIMLSFHISDEEFREI---ERPRIPYSSHESLGLFNNSVS-LLHFDKSSHYIDIWLMSD--MNWIQQFAIGPFLG-V-- 303 (401)
Q Consensus 233 ~~~Il~fD~~~e~~~~i---~lP~~~~~~~~~l~~~~g~L~-~~~~~~~~~~l~IW~l~~--~~W~~~~~i~~~~~-~-- 303 (401)
.+.|..||++.+..... .+++.....+. ..--+|+++ ++. .-..++.+|..+. ++-..+-+|+.++. +
T Consensus 166 ~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi-~FHpn~k~aY~v~--EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g 242 (346)
T COG2706 166 TDRIFLYDLDDGKLTPADPAEVKPGAGPRHI-VFHPNGKYAYLVN--ELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTG 242 (346)
T ss_pred CceEEEEEcccCccccccccccCCCCCcceE-EEcCCCcEEEEEe--ccCCEEEEEEEcCCCceEEEeeeeccCccccCC
Confidence 35777777776655443 22332221111 344577877 444 5667899999998 66777777764431 2
Q ss_pred ---ccceEEeeCCEEEEEeeCC----eEEEEECCCCcEEEEeec
Q 038747 304 ---MSPRGIWKNNAVLMESDNG----TLLLYDLIVEEVRDLGRF 340 (401)
Q Consensus 304 ---~~p~~~~~~~~il~~~~~~----~l~~yd~~t~~~~~v~~~ 340 (401)
..-+.+..+|++|..+..+ .++..|..+++++.+...
T Consensus 243 ~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~ 286 (346)
T COG2706 243 TNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGIT 286 (346)
T ss_pred CCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEe
Confidence 3447777899988876544 366668888888888766
No 48
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=82.01 E-value=34 Score=29.85 Aligned_cols=110 Identities=12% Similarity=0.124 Sum_probs=63.2
Q ss_pred eeEECceEEEEEeecCCCCccEEEEEEcCCceE-eEecCCCCCCCCCceeEEEcCeEEEEeecCCCCeEEEEEEc--C--
Q 038747 214 STNLNGVFYWLVSRDDGDHSNIMLSFHISDEEF-REIERPRIPYSSHESLGLFNNSVSLLHFDKSSHYIDIWLMS--D-- 288 (401)
Q Consensus 214 ~v~~~G~lywl~~~~~~~~~~~Il~fD~~~e~~-~~i~lP~~~~~~~~~l~~~~g~L~~~~~~~~~~~l~IW~l~--~-- 288 (401)
.+.-+|.+|-....+ .|.++|..+++- ....++...... ....++.+.+.. ... .|+.++ +
T Consensus 32 ~~~~~~~v~~~~~~~------~l~~~d~~tG~~~W~~~~~~~~~~~---~~~~~~~v~v~~---~~~--~l~~~d~~tG~ 97 (238)
T PF13360_consen 32 AVPDGGRVYVASGDG------NLYALDAKTGKVLWRFDLPGPISGA---PVVDGGRVYVGT---SDG--SLYALDAKTGK 97 (238)
T ss_dssp EEEETTEEEEEETTS------EEEEEETTTSEEEEEEECSSCGGSG---EEEETTEEEEEE---TTS--EEEEEETTTSC
T ss_pred EEEeCCEEEEEcCCC------EEEEEECCCCCEEEEeeccccccce---eeeccccccccc---cee--eeEecccCCcc
Confidence 445788888775444 999999865543 233445433221 366677776554 222 566665 2
Q ss_pred CcEEEEEEEcCCCCcccceEE-eeCCEEEEEeeCCeEEEEECCCCcEEEE
Q 038747 289 MNWIQQFAIGPFLGVMSPRGI-WKNNAVLMESDNGTLLLYDLIVEEVRDL 337 (401)
Q Consensus 289 ~~W~~~~~i~~~~~~~~p~~~-~~~~~il~~~~~~~l~~yd~~t~~~~~v 337 (401)
..|.....-.+......+... ..++.+++....+.++++|+++++...-
T Consensus 98 ~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~ 147 (238)
T PF13360_consen 98 VLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWK 147 (238)
T ss_dssp EEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEE
T ss_pred eeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEE
Confidence 678843322222212222222 2356677777688999999999987443
No 49
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=81.98 E-value=38 Score=32.60 Aligned_cols=108 Identities=10% Similarity=0.107 Sum_probs=62.8
Q ss_pred ceeEECceEEEEEeecCCCCccEEEEEEcCCce--EeEecCCCCCC--------CCCceeEEEcCeEEEEeecCCCCeEE
Q 038747 213 KSTNLNGVFYWLVSRDDGDHSNIMLSFHISDEE--FREIERPRIPY--------SSHESLGLFNNSVSLLHFDKSSHYID 282 (401)
Q Consensus 213 ~~v~~~G~lywl~~~~~~~~~~~Il~fD~~~e~--~~~i~lP~~~~--------~~~~~l~~~~g~L~~~~~~~~~~~l~ 282 (401)
.+++.+|.+|-....+ .+.+||..+++ |+. +++.... .......+.+|.+.+.. ... .
T Consensus 64 sPvv~~~~vy~~~~~g------~l~ald~~tG~~~W~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~---~~g--~ 131 (394)
T PRK11138 64 HPAVAYNKVYAADRAG------LVKALDADTGKEIWSV-DLSEKDGWFSKNKSALLSGGVTVAGGKVYIGS---EKG--Q 131 (394)
T ss_pred ccEEECCEEEEECCCC------eEEEEECCCCcEeeEE-cCCCcccccccccccccccccEEECCEEEEEc---CCC--E
Confidence 5688999999877655 89999986544 543 3332110 00112455566665432 222 2
Q ss_pred EEEEcC----CcEEEEEEEcCCCCcccceEEeeCCEEEEEeeCCeEEEEECCCCcEEEE
Q 038747 283 IWLMSD----MNWIQQFAIGPFLGVMSPRGIWKNNAVLMESDNGTLLLYDLIVEEVRDL 337 (401)
Q Consensus 283 IW~l~~----~~W~~~~~i~~~~~~~~p~~~~~~~~il~~~~~~~l~~yd~~t~~~~~v 337 (401)
+..++. ..|..... . .....|+.. ++.+++...++.++++|.+|++..+-
T Consensus 132 l~ald~~tG~~~W~~~~~--~-~~~ssP~v~--~~~v~v~~~~g~l~ald~~tG~~~W~ 185 (394)
T PRK11138 132 VYALNAEDGEVAWQTKVA--G-EALSRPVVS--DGLVLVHTSNGMLQALNESDGAVKWT 185 (394)
T ss_pred EEEEECCCCCCcccccCC--C-ceecCCEEE--CCEEEEECCCCEEEEEEccCCCEeee
Confidence 444442 56765421 1 112334332 57777777788899999999987654
No 50
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=81.14 E-value=34 Score=30.63 Aligned_cols=169 Identities=13% Similarity=0.089 Sum_probs=89.8
Q ss_pred cceEEEEEcCCCCccccCCCCcccceeeeCCCceeEECceEEEEEeecCCCCccEEEEEEcCC----ceEeEecCCCCCC
Q 038747 181 HSLVAIYTSTTDSWRVSKGNVEWIPYDFKSHFKSTNLNGVFYWLVSRDDGDHSNIMLSFHISD----EEFREIERPRIPY 256 (401)
Q Consensus 181 ~~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~Il~fD~~~----e~~~~i~lP~~~~ 256 (401)
.....+|+..|+++|..... ....+....+.-||.+.-..... .....+-.|+..+ ..|....-.....
T Consensus 45 ~a~s~~yD~~tn~~rpl~v~-----td~FCSgg~~L~dG~ll~tGG~~--~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~ 117 (243)
T PF07250_consen 45 PAHSVEYDPNTNTFRPLTVQ-----TDTFCSGGAFLPDGRLLQTGGDN--DGNKAIRIFTPCTSDGTCDWTESPNDMQSG 117 (243)
T ss_pred eEEEEEEecCCCcEEeccCC-----CCCcccCcCCCCCCCEEEeCCCC--ccccceEEEecCCCCCCCCceECcccccCC
Confidence 44567899999999877532 22223445566677666433222 2334667787754 4454432111112
Q ss_pred CCCce-eEEEcCeEEEEeecCCCCeEEEEEEcC-----CcEEEEEEEc-CC-CCcccceEEeeCCEEEEEeeCCeEEEEE
Q 038747 257 SSHES-LGLFNNSVSLLHFDKSSHYIDIWLMSD-----MNWIQQFAIG-PF-LGVMSPRGIWKNNAVLMESDNGTLLLYD 328 (401)
Q Consensus 257 ~~~~~-l~~~~g~L~~~~~~~~~~~l~IW~l~~-----~~W~~~~~i~-~~-~~~~~p~~~~~~~~il~~~~~~~l~~yd 328 (401)
.++.. ...-+|++.++.- ......+.|=-+. ..|....... .. ...+.-+.+.++|+||+....+ -..||
T Consensus 118 RWYpT~~~L~DG~vlIvGG-~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~-s~i~d 195 (243)
T PF07250_consen 118 RWYPTATTLPDGRVLIVGG-SNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG-SIIYD 195 (243)
T ss_pred CccccceECCCCCEEEEeC-cCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC-cEEEe
Confidence 22222 3333566555441 2233455543322 1121111111 11 1245557778899998877664 77789
Q ss_pred CCCCcE-EEEeeccCCCCCceEEEEEEecceeeCCC
Q 038747 329 LIVEEV-RDLGRFTRGTLGTAILTYCYKESLVRLKR 363 (401)
Q Consensus 329 ~~t~~~-~~v~~~~~~~~~~~~~~~~y~eslv~~~~ 363 (401)
.+++++ +.+... +. ..+.+....+-|.|+-
T Consensus 196 ~~~n~v~~~lP~l----Pg-~~R~YP~sgssvmLPl 226 (243)
T PF07250_consen 196 YKTNTVVRTLPDL----PG-GPRNYPASGSSVMLPL 226 (243)
T ss_pred CCCCeEEeeCCCC----CC-CceecCCCcceEEecC
Confidence 999976 554433 23 3466777777777776
No 51
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.06 E-value=37 Score=31.91 Aligned_cols=173 Identities=16% Similarity=0.281 Sum_probs=93.9
Q ss_pred ceEEEEEcCCCCccccCCCCcccceeeeCCCceeEECc-eEEEEEeecC-------------------------------
Q 038747 182 SLVAIYTSTTDSWRVSKGNVEWIPYDFKSHFKSTNLNG-VFYWLVSRDD------------------------------- 229 (401)
Q Consensus 182 ~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~~~v~~~G-~lywl~~~~~------------------------------- 229 (401)
..+..|++.+++|...+.. .|... ....++..+| .+|+...-..
T Consensus 113 nd~Y~y~p~~nsW~kl~t~---sP~gl-~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~ 188 (381)
T COG3055 113 NDAYRYDPSTNSWHKLDTR---SPTGL-VGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKK 188 (381)
T ss_pred eeeEEecCCCChhheeccc---ccccc-ccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCC
Confidence 4578899999999998864 33322 1223444444 5555532110
Q ss_pred ---CCCccEEEEEEcCCceEeEec-CCCCCCCCCceeEEEcCeEEEEe--ecCCCCeEEEEEEcC----CcEEEEEEEcC
Q 038747 230 ---GDHSNIMLSFHISDEEFREIE-RPRIPYSSHESLGLFNNSVSLLH--FDKSSHYIDIWLMSD----MNWIQQFAIGP 299 (401)
Q Consensus 230 ---~~~~~~Il~fD~~~e~~~~i~-lP~~~~~~~~~l~~~~g~L~~~~--~~~~~~~l~IW~l~~----~~W~~~~~i~~ 299 (401)
......+++||..+++|+..- .|...... ...+.-+++|.++. ....-++-++|+.+- ..|.+.-...+
T Consensus 189 ~~dy~~n~ev~sy~p~~n~W~~~G~~pf~~~aG-sa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~lp~ 267 (381)
T COG3055 189 AEDYFFNKEVLSYDPSTNQWRNLGENPFYGNAG-SAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSDLPA 267 (381)
T ss_pred HHHhcccccccccccccchhhhcCcCcccCccC-cceeecCCeEEEEcceecCCccccceeEEEeccCceeeeeccCCCC
Confidence 122357899999999999985 56532211 11233344455443 123334455555443 78999866543
Q ss_pred CCCcccceEEee------CCEEEEE-------------------------eeCCeEEEEECCCCcEEEEeeccCCCCCce
Q 038747 300 FLGVMSPRGIWK------NNAVLME-------------------------SDNGTLLLYDLIVEEVRDLGRFTRGTLGTA 348 (401)
Q Consensus 300 ~~~~~~p~~~~~------~~~il~~-------------------------~~~~~l~~yd~~t~~~~~v~~~~~~~~~~~ 348 (401)
...-. .-+++. ++.+++. ..+..++.+| ++.|+.+...+. ... .
T Consensus 268 ~~~~~-~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d--~g~Wk~~GeLp~-~l~-Y 342 (381)
T COG3055 268 PIGSN-KEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD--NGSWKIVGELPQ-GLA-Y 342 (381)
T ss_pred CCCCC-ccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc--CCceeeecccCC-Ccc-c
Confidence 22110 011111 3444433 1234577777 889998877632 222 2
Q ss_pred EEEEEEecceeeCCCc
Q 038747 349 ILTYCYKESLVRLKRV 364 (401)
Q Consensus 349 ~~~~~y~eslv~~~~~ 364 (401)
--...|-+.++.+++-
T Consensus 343 G~s~~~nn~vl~IGGE 358 (381)
T COG3055 343 GVSLSYNNKVLLIGGE 358 (381)
T ss_pred eEEEecCCcEEEEccc
Confidence 3455677777777744
No 52
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=80.91 E-value=38 Score=32.06 Aligned_cols=127 Identities=12% Similarity=0.039 Sum_probs=66.8
Q ss_pred eEEEeeCCceEEEccccccccccCCCCCCCCCcceeeeeeEEEEEeCCCCCeEEEEEEEEeccccCCCCCcceEEEE--E
Q 038747 111 IFCLCDDSLIFLWNPATKECRTLPNYSNFLPTCATFLYENAIFGLDHTSGDYKVVFICELWNEQIEAPYEHSLVAIY--T 188 (401)
Q Consensus 111 Ll~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~vy--s 188 (401)
+|++.......|+++.|+....+|.+.... . ....+..| +. +.++.................|++ +
T Consensus 79 Iv~~d~~~~t~vyDt~t~av~~~P~l~~pk--~---~pisv~VG-----~~--LY~m~~~~~~~~~~~~~~~~FE~l~~~ 146 (342)
T PF07893_consen 79 IVAVDQSGRTLVYDTDTRAVATGPRLHSPK--R---CPISVSVG-----DK--LYAMDRSPFPEPAGRPDFPCFEALVYR 146 (342)
T ss_pred EEEEcCCCCeEEEECCCCeEeccCCCCCCC--c---ceEEEEeC-----Ce--EEEeeccCccccccCccceeEEEeccc
Confidence 344444567899999999999998865421 1 11111111 11 444432211110000000044444 3
Q ss_pred --------cCCCCccccCCCCcccceeee-----CCCceeEECceEEEEEeecCCCCccEEEEEEcCCceEeEe---cCC
Q 038747 189 --------STTDSWRVSKGNVEWIPYDFK-----SHFKSTNLNGVFYWLVSRDDGDHSNIMLSFHISDEEFREI---ERP 252 (401)
Q Consensus 189 --------s~t~~W~~~~~~~~~~~~~~~-----~~~~~v~~~G~lywl~~~~~~~~~~~Il~fD~~~e~~~~i---~lP 252 (401)
.++.+|+..+.+ ++..... ....+|+ +|.--|+...+. ...-.+||+++.+|+.. .||
T Consensus 147 ~~~~~~~~~~~w~W~~LP~P--Pf~~~~~~~~~~i~sYavv-~g~~I~vS~~~~---~~GTysfDt~~~~W~~~GdW~LP 220 (342)
T PF07893_consen 147 PPPDDPSPEESWSWRSLPPP--PFVRDRRYSDYRITSYAVV-DGRTIFVSVNGR---RWGTYSFDTESHEWRKHGDWMLP 220 (342)
T ss_pred cccccccCCCcceEEcCCCC--CccccCCcccceEEEEEEe-cCCeEEEEecCC---ceEEEEEEcCCcceeeccceecC
Confidence 234578876543 2222111 2234566 888888865541 02588999999999997 677
Q ss_pred CCC
Q 038747 253 RIP 255 (401)
Q Consensus 253 ~~~ 255 (401)
..-
T Consensus 221 F~G 223 (342)
T PF07893_consen 221 FHG 223 (342)
T ss_pred cCC
Confidence 743
No 53
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=79.21 E-value=6.7 Score=22.33 Aligned_cols=26 Identities=27% Similarity=0.305 Sum_probs=21.1
Q ss_pred eCCEEEEEeeCCeEEEEECCCCcEEE
Q 038747 311 KNNAVLMESDNGTLLLYDLIVEEVRD 336 (401)
Q Consensus 311 ~~~~il~~~~~~~l~~yd~~t~~~~~ 336 (401)
.+|.+++...++.++++|.++++...
T Consensus 5 ~~~~v~~~~~~g~l~a~d~~~G~~~W 30 (33)
T smart00564 5 SDGTVYVGSTDGTLYALDAKTGEILW 30 (33)
T ss_pred ECCEEEEEcCCCEEEEEEcccCcEEE
Confidence 35677777888999999999998765
No 54
>smart00612 Kelch Kelch domain.
Probab=78.68 E-value=4.2 Score=25.16 Aligned_cols=19 Identities=21% Similarity=0.447 Sum_probs=16.1
Q ss_pred cceEEEEEcCCCCccccCC
Q 038747 181 HSLVAIYTSTTDSWRVSKG 199 (401)
Q Consensus 181 ~~~~~vyss~t~~W~~~~~ 199 (401)
...+++|+.+++.|+..+.
T Consensus 14 ~~~v~~yd~~~~~W~~~~~ 32 (47)
T smart00612 14 LKSVEVYDPETNKWTPLPS 32 (47)
T ss_pred eeeEEEECCCCCeEccCCC
Confidence 4578999999999998764
No 55
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=78.62 E-value=0.75 Score=46.25 Aligned_cols=44 Identities=34% Similarity=0.624 Sum_probs=38.4
Q ss_pred CccCCCCHHHHHHHHhcCChhhhhhhhccchhhhcccCChhhHH
Q 038747 8 DSSMLMPEDVRLEILSRLPVKSLMRLRCVCKSWYALIENPKFIS 51 (401)
Q Consensus 8 ~~~~~LP~Dll~~IL~rLP~~sl~r~r~VcK~W~~li~~~~F~~ 51 (401)
+-...||.++...||..|+.++++++++||+.|+.+..+.....
T Consensus 106 dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~ 149 (537)
T KOG0274|consen 106 DFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWW 149 (537)
T ss_pred chhhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhh
Confidence 34567999999999999999999999999999999998665544
No 56
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=77.82 E-value=64 Score=30.47 Aligned_cols=116 Identities=12% Similarity=0.171 Sum_probs=69.9
Q ss_pred CceEEEEEeecCCCCccEEEEEEcCCce--Ee---EecCCCCCCCCCceeEEEcCeEE-EEeecCCCCeEEEEEEcC--C
Q 038747 218 NGVFYWLVSRDDGDHSNIMLSFHISDEE--FR---EIERPRIPYSSHESLGLFNNSVS-LLHFDKSSHYIDIWLMSD--M 289 (401)
Q Consensus 218 ~G~lywl~~~~~~~~~~~Il~fD~~~e~--~~---~i~lP~~~~~~~~~l~~~~g~L~-~~~~~~~~~~l~IW~l~~--~ 289 (401)
+|..-|.+..+ .+.|..|++..+. +. .+.+|......+. ...-+|+.. +.. .....+.++.++. +
T Consensus 154 dg~~v~v~dlG----~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~-~f~pdg~~~Yv~~--e~s~~v~v~~~~~~~g 226 (345)
T PF10282_consen 154 DGRFVYVPDLG----ADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHL-AFSPDGKYAYVVN--ELSNTVSVFDYDPSDG 226 (345)
T ss_dssp TSSEEEEEETT----TTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEE-EE-TTSSEEEEEE--TTTTEEEEEEEETTTT
T ss_pred CCCEEEEEecC----CCEEEEEEEeCCCceEEEeeccccccCCCCcEE-EEcCCcCEEEEec--CCCCcEEEEeecccCC
Confidence 46555555433 3588888887765 43 3456654332221 222355544 444 6677899999983 7
Q ss_pred cEEEEEEEcCCCC------cccceEEeeCCEEEEEe--eCCeEEEEEC--CCCcEEEEeec
Q 038747 290 NWIQQFAIGPFLG------VMSPRGIWKNNAVLMES--DNGTLLLYDL--IVEEVRDLGRF 340 (401)
Q Consensus 290 ~W~~~~~i~~~~~------~~~p~~~~~~~~il~~~--~~~~l~~yd~--~t~~~~~v~~~ 340 (401)
.+....++...+. ...-+.+.++|+.++.. ....+..|++ ++++++.+...
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~ 287 (345)
T PF10282_consen 227 SLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTV 287 (345)
T ss_dssp EEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEE
T ss_pred ceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEE
Confidence 7888777764421 12336777888776654 3456888887 56788887665
No 57
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=76.43 E-value=5.5 Score=23.94 Aligned_cols=28 Identities=18% Similarity=0.054 Sum_probs=22.2
Q ss_pred CEEEEEeeCCeEEEEECCCCcEEEEeec
Q 038747 313 NAVLMESDNGTLLLYDLIVEEVRDLGRF 340 (401)
Q Consensus 313 ~~il~~~~~~~l~~yd~~t~~~~~v~~~ 340 (401)
|.|++...++.++++|.+|++..+-...
T Consensus 1 ~~v~~~~~~g~l~AlD~~TG~~~W~~~~ 28 (38)
T PF01011_consen 1 GRVYVGTPDGYLYALDAKTGKVLWKFQT 28 (38)
T ss_dssp TEEEEETTTSEEEEEETTTTSEEEEEES
T ss_pred CEEEEeCCCCEEEEEECCCCCEEEeeeC
Confidence 4567777788999999999998775443
No 58
>PLN02772 guanylate kinase
Probab=72.63 E-value=24 Score=33.94 Aligned_cols=75 Identities=12% Similarity=0.099 Sum_probs=50.4
Q ss_pred CceeEECceEEEEEeecCC-CCccEEEEEEcCCceEeEecC----CCCCCCCCceeEEEcCeEEEEeecCCCCeEEEEEE
Q 038747 212 FKSTNLNGVFYWLVSRDDG-DHSNIMLSFHISDEEFREIER----PRIPYSSHESLGLFNNSVSLLHFDKSSHYIDIWLM 286 (401)
Q Consensus 212 ~~~v~~~G~lywl~~~~~~-~~~~~Il~fD~~~e~~~~i~l----P~~~~~~~~~l~~~~g~L~~~~~~~~~~~l~IW~l 286 (401)
..++.+++.+|-+...... .....+.+||..+.+|..-.+ |.... .+..+..-+++|-++.- .....=+||.|
T Consensus 28 ~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~-GhSa~v~~~~rilv~~~-~~~~~~~~w~l 105 (398)
T PLN02772 28 ETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCK-GYSAVVLNKDRILVIKK-GSAPDDSIWFL 105 (398)
T ss_pred ceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCC-cceEEEECCceEEEEeC-CCCCccceEEE
Confidence 4788999999988764422 245689999999999988542 33332 23324444678777662 34445789999
Q ss_pred cC
Q 038747 287 SD 288 (401)
Q Consensus 287 ~~ 288 (401)
+-
T Consensus 106 ~~ 107 (398)
T PLN02772 106 EV 107 (398)
T ss_pred Ec
Confidence 85
No 59
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=72.33 E-value=95 Score=29.86 Aligned_cols=106 Identities=11% Similarity=0.133 Sum_probs=60.4
Q ss_pred CceeEECceEEEEEeecCCCCccEEEEEEcCCce--EeEecCCCCCCCCCceeEEEcCeEEEEeecCCCCeEEEEEEcC-
Q 038747 212 FKSTNLNGVFYWLVSRDDGDHSNIMLSFHISDEE--FREIERPRIPYSSHESLGLFNNSVSLLHFDKSSHYIDIWLMSD- 288 (401)
Q Consensus 212 ~~~v~~~G~lywl~~~~~~~~~~~Il~fD~~~e~--~~~i~lP~~~~~~~~~l~~~~g~L~~~~~~~~~~~l~IW~l~~- 288 (401)
..++..+|.+|.....+ .+.++|..+++ |.. +++.. ..+...+|.|.+.. ....+...-.++
T Consensus 250 ~sP~v~~~~vy~~~~~g------~l~ald~~tG~~~W~~-~~~~~-----~~~~~~~~~vy~~~---~~g~l~ald~~tG 314 (394)
T PRK11138 250 TTPVVVGGVVYALAYNG------NLVALDLRSGQIVWKR-EYGSV-----NDFAVDGGRIYLVD---QNDRVYALDTRGG 314 (394)
T ss_pred CCcEEECCEEEEEEcCC------eEEEEECCCCCEEEee-cCCCc-----cCcEEECCEEEEEc---CCCeEEEEECCCC
Confidence 46788899999877655 89999998654 543 22211 11344556655433 112222222222
Q ss_pred -CcEEEEEEEcCCCCcccceEEeeCCEEEEEeeCCeEEEEECCCCcEEE
Q 038747 289 -MNWIQQFAIGPFLGVMSPRGIWKNNAVLMESDNGTLLLYDLIVEEVRD 336 (401)
Q Consensus 289 -~~W~~~~~i~~~~~~~~p~~~~~~~~il~~~~~~~l~~yd~~t~~~~~ 336 (401)
..|.... .. ......|+. .++.|++...++.++++|.+++++..
T Consensus 315 ~~~W~~~~-~~-~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~ 359 (394)
T PRK11138 315 VELWSQSD-LL-HRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVA 359 (394)
T ss_pred cEEEcccc-cC-CCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 3454311 11 011223443 36888888888899999999998654
No 60
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=71.68 E-value=47 Score=30.21 Aligned_cols=126 Identities=13% Similarity=0.143 Sum_probs=76.1
Q ss_pred ceeeccccceEEEe--eCCceEEEccccccccccCCCCCCCCCcceeeeeeEEEEEeCCCCCeEEEEEEEEeccccCCCC
Q 038747 102 RTLLGPYDGIFCLC--DDSLIFLWNPATKECRTLPNYSNFLPTCATFLYENAIFGLDHTSGDYKVVFICELWNEQIEAPY 179 (401)
Q Consensus 102 ~~~~~s~~GLl~~~--~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~ 179 (401)
.-++..-+|-|-+. ..+.+.-.||.++.--++|.+..... ..-...-|+... +.+.. -
T Consensus 192 yGi~atpdGsvwyaslagnaiaridp~~~~aev~p~P~~~~~-------gsRriwsdpig~----~witt---------w 251 (353)
T COG4257 192 YGICATPDGSVWYASLAGNAIARIDPFAGHAEVVPQPNALKA-------GSRRIWSDPIGR----AWITT---------W 251 (353)
T ss_pred cceEECCCCcEEEEeccccceEEcccccCCcceecCCCcccc-------cccccccCccCc----EEEec---------c
Confidence 35666667777666 35677788999998778888764211 111222233221 12211 0
Q ss_pred CcceEEEEEcCCCCccccCCCCcccceeeeCCCceeEECc-eEEEEEeecCCCCccEEEEEEcCCceEeEecCCCCCCC
Q 038747 180 EHSLVAIYTSTTDSWRVSKGNVEWIPYDFKSHFKSTNLNG-VFYWLVSRDDGDHSNIMLSFHISDEEFREIERPRIPYS 257 (401)
Q Consensus 180 ~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~~~v~~~G-~lywl~~~~~~~~~~~Il~fD~~~e~~~~i~lP~~~~~ 257 (401)
..-.+.-|+..+.+|.+-..+ -.-. ...++++|. -.-|+.... ...|+.||.++++|.++++|.....
T Consensus 252 g~g~l~rfdPs~~sW~eypLP-----gs~a-rpys~rVD~~grVW~sea~----agai~rfdpeta~ftv~p~pr~n~g 320 (353)
T COG4257 252 GTGSLHRFDPSVTSWIEYPLP-----GSKA-RPYSMRVDRHGRVWLSEAD----AGAIGRFDPETARFTVLPIPRPNSG 320 (353)
T ss_pred CCceeeEeCcccccceeeeCC-----CCCC-CcceeeeccCCcEEeeccc----cCceeecCcccceEEEecCCCCCCC
Confidence 245778899998889876533 2111 124455553 234664332 3589999999999999999886543
No 61
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=71.35 E-value=8.4 Score=24.40 Aligned_cols=37 Identities=19% Similarity=0.406 Sum_probs=21.6
Q ss_pred ceeEE-CceEEEEEeecC-CCCccEEEEEEcCCceEeEe
Q 038747 213 KSTNL-NGVFYWLVSRDD-GDHSNIMLSFHISDEEFREI 249 (401)
Q Consensus 213 ~~v~~-~G~lywl~~~~~-~~~~~~Il~fD~~~e~~~~i 249 (401)
.++.+ ++.+|....... +.....+..||+.+++|+.+
T Consensus 6 ~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~ 44 (49)
T PF13418_consen 6 SAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRL 44 (49)
T ss_dssp EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE-
T ss_pred EEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEEC
Confidence 44555 477776654442 12335789999999999998
No 62
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=70.85 E-value=1e+02 Score=29.72 Aligned_cols=119 Identities=18% Similarity=0.215 Sum_probs=65.3
Q ss_pred EECceEEEEEeecCCCCccEEEEEEcCCce---EeEecCCCCCCCCCceeEEEcCeEEEEeecCCCCeEEEEEEcCCcEE
Q 038747 216 NLNGVFYWLVSRDDGDHSNIMLSFHISDEE---FREIERPRIPYSSHESLGLFNNSVSLLHFDKSSHYIDIWLMSDMNWI 292 (401)
Q Consensus 216 ~~~G~lywl~~~~~~~~~~~Il~fD~~~e~---~~~i~lP~~~~~~~~~l~~~~g~L~~~~~~~~~~~l~IW~l~~~~W~ 292 (401)
..++.+|.++... .....|++.|+.+.. |..+-+|......-..+...++.|.+...+.....|.|+-+. ..|.
T Consensus 285 ~~~~~~yi~Tn~~--a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~-~~~~ 361 (414)
T PF02897_consen 285 HHGDRLYILTNDD--APNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLD-DGKE 361 (414)
T ss_dssp EETTEEEEEE-TT---TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT--TEE
T ss_pred ccCCEEEEeeCCC--CCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECC-CCcE
Confidence 4578888888643 344799999998775 554333332211112266678888765533444445554444 2555
Q ss_pred EEEEEcCCCCcccceEEe---eCCEEEEEe----eCCeEEEEECCCCcEEEEee
Q 038747 293 QQFAIGPFLGVMSPRGIW---KNNAVLMES----DNGTLLLYDLIVEEVRDLGR 339 (401)
Q Consensus 293 ~~~~i~~~~~~~~p~~~~---~~~~il~~~----~~~~l~~yd~~t~~~~~v~~ 339 (401)
....-.|..+ ...++. ..+.+++.. ....++.||+.+++.+.+..
T Consensus 362 ~~~~~~p~~g--~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~k~ 413 (414)
T PF02897_consen 362 SREIPLPEAG--SVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTLLKQ 413 (414)
T ss_dssp EEEEESSSSS--EEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEEEEE
T ss_pred EeeecCCcce--EEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEEEEe
Confidence 5443223221 111222 145666653 24579999999999987753
No 63
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=69.20 E-value=75 Score=28.34 Aligned_cols=120 Identities=9% Similarity=0.125 Sum_probs=68.7
Q ss_pred CCceeEECceEEEEEeecCCCCccEEEEEEcCCce-EeEecCCCCCCCCC----------ceeEEEcCeEE-EEeecCCC
Q 038747 211 HFKSTNLNGVFYWLVSRDDGDHSNIMLSFHISDEE-FREIERPRIPYSSH----------ESLGLFNNSVS-LLHFDKSS 278 (401)
Q Consensus 211 ~~~~v~~~G~lywl~~~~~~~~~~~Il~fD~~~e~-~~~i~lP~~~~~~~----------~~l~~~~g~L~-~~~~~~~~ 278 (401)
...-|+.||++|+..... ..|+.||+.++. .....+|....... ..+++-+..|- ++......
T Consensus 70 gTg~VVynGs~yynk~~t-----~~ivky~l~~~~~~~~~~lp~a~y~~~~~y~~~g~sdiD~avDE~GLWviYat~~~~ 144 (249)
T KOG3545|consen 70 GTGHVVYNGSLYYNKAGT-----RNIIKYDLETRTVAGSAALPYAGYHNPSPYYWGGHSDIDLAVDENGLWVIYATPENA 144 (249)
T ss_pred ccceEEEcceEEeeccCC-----cceEEEEeecceeeeeeeccccccCCCcccccCCCccccceecccceeEEecccccC
Confidence 346799999999876443 589999999854 44456666543221 12666655565 55544555
Q ss_pred CeEEEEEEcC------CcEEEEEEEcCCCCcccceEEeeCCEEEEEee----CCeE-EEEECCCCcEEEEeec
Q 038747 279 HYIDIWLMSD------MNWIQQFAIGPFLGVMSPRGIWKNNAVLMESD----NGTL-LLYDLIVEEVRDLGRF 340 (401)
Q Consensus 279 ~~l~IW~l~~------~~W~~~~~i~~~~~~~~p~~~~~~~~il~~~~----~~~l-~~yd~~t~~~~~v~~~ 340 (401)
..+.|=.|+. ..|.-... . .... =+|.-.|.++...+ ...+ ++||..+++-+.+.+.
T Consensus 145 g~iv~skLdp~tl~~e~tW~T~~~--k-~~~~--~aF~iCGvLY~v~S~~~~~~~i~yaydt~~~~~~~~~ip 212 (249)
T KOG3545|consen 145 GTIVLSKLDPETLEVERTWNTTLP--K-RSAG--NAFMICGVLYVVHSYNCTHTQISYAYDTTTGTQERIDLP 212 (249)
T ss_pred CcEEeeccCHHHhheeeeeccccC--C-CCcC--ceEEEeeeeEEEeccccCCceEEEEEEcCCCceeccccc
Confidence 6666666765 44532111 1 1010 11222366655422 2233 6999998888777654
No 64
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=68.17 E-value=1.2e+02 Score=29.57 Aligned_cols=181 Identities=13% Similarity=0.113 Sum_probs=96.7
Q ss_pred ccccccccccCCCCCCCCCcceeeeeeEEEEEeCCCCCeEEEEEEEEeccccCCCCCcceEEEEEcCCCCccccCCCCcc
Q 038747 124 NPATKECRTLPNYSNFLPTCATFLYENAIFGLDHTSGDYKVVFICELWNEQIEAPYEHSLVAIYTSTTDSWRVSKGNVEW 203 (401)
Q Consensus 124 NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~~~ 203 (401)
+|-++-|.+.-.++.. ........+.+.|... |-++... ...+++|++.+.+=+..-. .
T Consensus 8 t~e~~~w~~~~~~~~~-----ke~~~vssl~fsp~~P-~d~aVt~------------S~rvqly~~~~~~~~k~~s---r 66 (487)
T KOG0310|consen 8 TPEIRYWRQETFPPVH-----KEHNSVSSLCFSPKHP-YDFAVTS------------SVRVQLYSSVTRSVRKTFS---R 66 (487)
T ss_pred Cccchhhhhhcccccc-----cccCcceeEecCCCCC-CceEEec------------ccEEEEEecchhhhhhhHH---h
Confidence 5566666654333321 1113444556656443 3333332 5689999998865433111 0
Q ss_pred cceeeeCCCceeEECceEEEEEeecCCCCccEEEEEEcCCce-EeEe---cCCCCCCCCCceeEEEcCeEEEEeecCCCC
Q 038747 204 IPYDFKSHFKSTNLNGVFYWLVSRDDGDHSNIMLSFHISDEE-FREI---ERPRIPYSSHESLGLFNNSVSLLHFDKSSH 279 (401)
Q Consensus 204 ~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~Il~fD~~~e~-~~~i---~lP~~~~~~~~~l~~~~g~L~~~~~~~~~~ 279 (401)
+.-. -....+.-||.|.-..... ..+-.||+.+.. .+.+ ..|... ......++.+.+.. .+..
T Consensus 67 Fk~~--v~s~~fR~DG~LlaaGD~s-----G~V~vfD~k~r~iLR~~~ah~apv~~----~~f~~~d~t~l~s~--sDd~ 133 (487)
T KOG0310|consen 67 FKDV--VYSVDFRSDGRLLAAGDES-----GHVKVFDMKSRVILRQLYAHQAPVHV----TKFSPQDNTMLVSG--SDDK 133 (487)
T ss_pred hccc--eeEEEeecCCeEEEccCCc-----CcEEEeccccHHHHHHHhhccCceeE----EEecccCCeEEEec--CCCc
Confidence 0000 0012233468887655443 588899965522 1222 222211 11333455554444 6778
Q ss_pred eEEEEEEcCCcEEEEEEEcCCCCcccceEEee-CCEEEEE-eeCCeEEEEECCCCcEEEEeec
Q 038747 280 YIDIWLMSDMNWIQQFAIGPFLGVMSPRGIWK-NNAVLME-SDNGTLLLYDLIVEEVRDLGRF 340 (401)
Q Consensus 280 ~l~IW~l~~~~W~~~~~i~~~~~~~~p~~~~~-~~~il~~-~~~~~l~~yd~~t~~~~~v~~~ 340 (401)
...+|.+.... + ...+....++.+-..+.+ ++-|++. ..++.+-.||.++..-+.+.+.
T Consensus 134 v~k~~d~s~a~-v-~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln 194 (487)
T KOG0310|consen 134 VVKYWDLSTAY-V-QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN 194 (487)
T ss_pred eEEEEEcCCcE-E-EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec
Confidence 89999998833 3 444554445555555555 4557776 4578899999988863444443
No 65
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=67.60 E-value=88 Score=27.63 Aligned_cols=110 Identities=10% Similarity=0.061 Sum_probs=66.7
Q ss_pred eeEE--CceEEEEEeecCCCCccEEEEEEcCCceEeEecCCCCCCCCCceeEEE--cCeEEEEeecCCCCeEEEEEEcCC
Q 038747 214 STNL--NGVFYWLVSRDDGDHSNIMLSFHISDEEFREIERPRIPYSSHESLGLF--NNSVSLLHFDKSSHYIDIWLMSDM 289 (401)
Q Consensus 214 ~v~~--~G~lywl~~~~~~~~~~~Il~fD~~~e~~~~i~lP~~~~~~~~~l~~~--~g~L~~~~~~~~~~~l~IW~l~~~ 289 (401)
+++. +|.|||..... ..|..+|..+++...+.+|... .+... +|.|.+.. . ..+.+.-++.+
T Consensus 5 p~~d~~~g~l~~~D~~~-----~~i~~~~~~~~~~~~~~~~~~~-----G~~~~~~~g~l~v~~--~--~~~~~~d~~~g 70 (246)
T PF08450_consen 5 PVWDPRDGRLYWVDIPG-----GRIYRVDPDTGEVEVIDLPGPN-----GMAFDRPDGRLYVAD--S--GGIAVVDPDTG 70 (246)
T ss_dssp EEEETTTTEEEEEETTT-----TEEEEEETTTTEEEEEESSSEE-----EEEEECTTSEEEEEE--T--TCEEEEETTTT
T ss_pred eEEECCCCEEEEEEcCC-----CEEEEEECCCCeEEEEecCCCc-----eEEEEccCCEEEEEE--c--CceEEEecCCC
Confidence 4455 69999996544 4999999999999988888721 12332 45654433 1 22333322237
Q ss_pred cEEEEEEEcCCC-Ccccc--eEEeeCCEEEEEeeC---------CeEEEEECCCCcEEEEe
Q 038747 290 NWIQQFAIGPFL-GVMSP--RGIWKNNAVLMESDN---------GTLLLYDLIVEEVRDLG 338 (401)
Q Consensus 290 ~W~~~~~i~~~~-~~~~p--~~~~~~~~il~~~~~---------~~l~~yd~~t~~~~~v~ 338 (401)
.+.......... ....| +++.++|.+++.... +.++.+++. ++.+.+.
T Consensus 71 ~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~ 130 (246)
T PF08450_consen 71 KVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA 130 (246)
T ss_dssp EEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE
T ss_pred cEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEe
Confidence 777777663211 23333 677778888887432 568999998 6665553
No 66
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=66.47 E-value=3.8 Score=26.05 Aligned_cols=19 Identities=16% Similarity=0.403 Sum_probs=14.1
Q ss_pred ceEEEccccccccccCCCC
Q 038747 119 LIFLWNPATKECRTLPNYS 137 (401)
Q Consensus 119 ~~~V~NP~T~~~~~LP~~~ 137 (401)
.++++|+.|++|.+||++|
T Consensus 30 d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 30 DLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp -EEEEETTTTEEEE--SS-
T ss_pred CEEEEECCCCEEEECCCCC
Confidence 7899999999999997765
No 67
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=65.98 E-value=1.2e+02 Score=28.58 Aligned_cols=149 Identities=13% Similarity=0.112 Sum_probs=77.9
Q ss_pred cceEEEEEcCCCC--ccccCCCCcccceeeeCCCceeEE-Cc-eEEEEEeecCCCCccEEEEEEcC--CceEeEec----
Q 038747 181 HSLVAIYTSTTDS--WRVSKGNVEWIPYDFKSHFKSTNL-NG-VFYWLVSRDDGDHSNIMLSFHIS--DEEFREIE---- 250 (401)
Q Consensus 181 ~~~~~vyss~t~~--W~~~~~~~~~~~~~~~~~~~~v~~-~G-~lywl~~~~~~~~~~~Il~fD~~--~e~~~~i~---- 250 (401)
...+.+|+...+. ....... ..+.. ..++..++. +| .+|...... ..|.+|++. +..+..+.
T Consensus 165 ~D~v~~~~~~~~~~~l~~~~~~--~~~~G-~GPRh~~f~pdg~~~Yv~~e~s-----~~v~v~~~~~~~g~~~~~~~~~~ 236 (345)
T PF10282_consen 165 ADRVYVYDIDDDTGKLTPVDSI--KVPPG-SGPRHLAFSPDGKYAYVVNELS-----NTVSVFDYDPSDGSLTEIQTIST 236 (345)
T ss_dssp TTEEEEEEE-TTS-TEEEEEEE--ECSTT-SSEEEEEE-TTSSEEEEEETTT-----TEEEEEEEETTTTEEEEEEEEES
T ss_pred CCEEEEEEEeCCCceEEEeecc--ccccC-CCCcEEEEcCCcCEEEEecCCC-----CcEEEEeecccCCceeEEEEeee
Confidence 5578888887665 3321111 00100 001111221 45 455554333 477777777 66666642
Q ss_pred CCCCCCCC-Cc-eeEEE-cCeE-EEEeecCCCCeEEEEEEcC--CcEEEEEEEcCCCCcccceEEeeCCEEEEEe--eCC
Q 038747 251 RPRIPYSS-HE-SLGLF-NNSV-SLLHFDKSSHYIDIWLMSD--MNWIQQFAIGPFLGVMSPRGIWKNNAVLMES--DNG 322 (401)
Q Consensus 251 lP~~~~~~-~~-~l~~~-~g~L-~~~~~~~~~~~l~IW~l~~--~~W~~~~~i~~~~~~~~p~~~~~~~~il~~~--~~~ 322 (401)
+|...... .. .+... +|+. .+.. .....+.++.++. +.-.++..+.......+.+.+.++|+.++.. ..+
T Consensus 237 ~~~~~~~~~~~~~i~ispdg~~lyvsn--r~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~ 314 (345)
T PF10282_consen 237 LPEGFTGENAPAEIAISPDGRFLYVSN--RGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSN 314 (345)
T ss_dssp CETTSCSSSSEEEEEE-TTSSEEEEEE--CTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTT
T ss_pred ccccccccCCceeEEEecCCCEEEEEe--ccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCC
Confidence 34432222 11 14443 4553 3333 6788999999955 5555555554322234557777788776653 455
Q ss_pred eEEEE--ECCCCcEEEEee
Q 038747 323 TLLLY--DLIVEEVRDLGR 339 (401)
Q Consensus 323 ~l~~y--d~~t~~~~~v~~ 339 (401)
.+..| |.++++++.+..
T Consensus 315 ~v~vf~~d~~tG~l~~~~~ 333 (345)
T PF10282_consen 315 TVSVFDIDPDTGKLTPVGS 333 (345)
T ss_dssp EEEEEEEETTTTEEEEEEE
T ss_pred eEEEEEEeCCCCcEEEecc
Confidence 67666 568899888864
No 68
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=65.93 E-value=12 Score=27.65 Aligned_cols=19 Identities=37% Similarity=0.389 Sum_probs=15.2
Q ss_pred CCeEEEEECCCCcEEEEee
Q 038747 321 NGTLLLYDLIVEEVRDLGR 339 (401)
Q Consensus 321 ~~~l~~yd~~t~~~~~v~~ 339 (401)
.|+++.||++|++.+.+--
T Consensus 36 ~GRll~ydp~t~~~~vl~~ 54 (89)
T PF03088_consen 36 TGRLLRYDPSTKETTVLLD 54 (89)
T ss_dssp -EEEEEEETTTTEEEEEEE
T ss_pred CcCEEEEECCCCeEEEehh
Confidence 4689999999999877643
No 69
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=65.90 E-value=1.4e+02 Score=29.21 Aligned_cols=102 Identities=13% Similarity=0.153 Sum_probs=59.0
Q ss_pred cEEEEEEcCCceEeEecCCCCCCCCCce-eEEEcCeEEEEeecCCCCeEEEEEEcCCcEEEEEEEcCCCCcccceEEeeC
Q 038747 234 NIMLSFHISDEEFREIERPRIPYSSHES-LGLFNNSVSLLHFDKSSHYIDIWLMSDMNWIQQFAIGPFLGVMSPRGIWKN 312 (401)
Q Consensus 234 ~~Il~fD~~~e~~~~i~lP~~~~~~~~~-l~~~~g~L~~~~~~~~~~~l~IW~l~~~~W~~~~~i~~~~~~~~p~~~~~~ 312 (401)
.++.+||+.+.+...+..|......... .-+....=.++. ......|.+--.+...|.--+.|. +...-+.+..+
T Consensus 280 ky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~-~G~~G~I~lLhakT~eli~s~Kie---G~v~~~~fsSd 355 (514)
T KOG2055|consen 280 KYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAI-AGNNGHIHLLHAKTKELITSFKIE---GVVSDFTFSSD 355 (514)
T ss_pred eEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEE-cccCceEEeehhhhhhhhheeeec---cEEeeEEEecC
Confidence 4899999999999999888765522211 222211111111 123334444444445555555443 23344666666
Q ss_pred CEE-EEEeeCCeEEEEECCCCcEEEEee
Q 038747 313 NAV-LMESDNGTLLLYDLIVEEVRDLGR 339 (401)
Q Consensus 313 ~~i-l~~~~~~~l~~yd~~t~~~~~v~~ 339 (401)
++. +..+..++++.||++++.......
T Consensus 356 sk~l~~~~~~GeV~v~nl~~~~~~~rf~ 383 (514)
T KOG2055|consen 356 SKELLASGGTGEVYVWNLRQNSCLHRFV 383 (514)
T ss_pred CcEEEEEcCCceEEEEecCCcceEEEEe
Confidence 655 455678899999999986544433
No 70
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=63.90 E-value=18 Score=23.01 Aligned_cols=17 Identities=18% Similarity=0.337 Sum_probs=15.2
Q ss_pred ccEEEEEEcCCceEeEe
Q 038747 233 SNIMLSFHISDEEFREI 249 (401)
Q Consensus 233 ~~~Il~fD~~~e~~~~i 249 (401)
...+.+||+.+.+|..+
T Consensus 18 ~nd~~~~~~~~~~W~~~ 34 (49)
T PF13415_consen 18 LNDVWVFDLDTNTWTRI 34 (49)
T ss_pred ecCEEEEECCCCEEEEC
Confidence 35789999999999998
No 71
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=61.96 E-value=1.8e+02 Score=29.35 Aligned_cols=112 Identities=12% Similarity=0.131 Sum_probs=60.9
Q ss_pred CceeEECceEEEEEeecCCCCccEEEEEEcCCc--eEeEe-cCCCCCCC------CCceeEEEcCeEEEEeecCCCCeEE
Q 038747 212 FKSTNLNGVFYWLVSRDDGDHSNIMLSFHISDE--EFREI-ERPRIPYS------SHESLGLFNNSVSLLHFDKSSHYID 282 (401)
Q Consensus 212 ~~~v~~~G~lywl~~~~~~~~~~~Il~fD~~~e--~~~~i-~lP~~~~~------~~~~l~~~~g~L~~~~~~~~~~~l~ 282 (401)
..+++.+|.+|.....+ .|.++|..++ .|+.- ..|..... ....+...+|++.+.. .. -.
T Consensus 63 stPvv~~g~vyv~s~~g------~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t--~d---g~ 131 (527)
T TIGR03075 63 SQPLVVDGVMYVTTSYS------RVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGT--LD---AR 131 (527)
T ss_pred cCCEEECCEEEEECCCC------cEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEc--CC---CE
Confidence 46788999999866554 8999998765 46542 33322111 0111445556654322 11 13
Q ss_pred EEEEcC----CcEEEEEEEcCC---CCcccceEEeeCCEEEEEee------CCeEEEEECCCCcEEEE
Q 038747 283 IWLMSD----MNWIQQFAIGPF---LGVMSPRGIWKNNAVLMESD------NGTLLLYDLIVEEVRDL 337 (401)
Q Consensus 283 IW~l~~----~~W~~~~~i~~~---~~~~~p~~~~~~~~il~~~~------~~~l~~yd~~t~~~~~v 337 (401)
+..|+. ..|..... +.. .....|+.. ++.|++... .+.+++||.+|++...-
T Consensus 132 l~ALDa~TGk~~W~~~~~-~~~~~~~~tssP~v~--~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~ 196 (527)
T TIGR03075 132 LVALDAKTGKVVWSKKNG-DYKAGYTITAAPLVV--KGKVITGISGGEFGVRGYVTAYDAKTGKLVWR 196 (527)
T ss_pred EEEEECCCCCEEeecccc-cccccccccCCcEEE--CCEEEEeecccccCCCcEEEEEECCCCceeEe
Confidence 455544 45665321 111 111234433 456666432 46899999999986553
No 72
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=61.35 E-value=1.6e+02 Score=29.02 Aligned_cols=143 Identities=17% Similarity=0.121 Sum_probs=75.0
Q ss_pred eEEEEEcCCCCccccCCCCccccee--------e---eCCCceeEECceEEEEEeecCCCCccEEEEEEcCCceEeEecC
Q 038747 183 LVAIYTSTTDSWRVSKGNVEWIPYD--------F---KSHFKSTNLNGVFYWLVSRDDGDHSNIMLSFHISDEEFREIER 251 (401)
Q Consensus 183 ~~~vyss~t~~W~~~~~~~~~~~~~--------~---~~~~~~v~~~G~lywl~~~~~~~~~~~Il~fD~~~e~~~~i~l 251 (401)
.+.+|+..|++=+.++.. +|.. . ..-..-..++|-++-+..++ ....++....- .+++
T Consensus 288 dIylydP~td~lekldI~---lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRG------kaFi~~~~~~~--~iqv 356 (668)
T COG4946 288 DIYLYDPETDSLEKLDIG---LPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRG------KAFIMRPWDGY--SIQV 356 (668)
T ss_pred cEEEeCCCcCcceeeecC---CccccccccccccCHHHhhhhhccCCCcEEEEEecC------cEEEECCCCCe--eEEc
Confidence 456677777766655432 1211 0 00112345778888777766 34444443322 2444
Q ss_pred CCCCCCCCceeEEEcCeEEEEeecCCCCeEEEEEEcCCcEEEEEEEcCCCCcccceEEeeCCE-EEEEeeCCeEEEEECC
Q 038747 252 PRIPYSSHESLGLFNNSVSLLHFDKSSHYIDIWLMSDMNWIQQFAIGPFLGVMSPRGIWKNNA-VLMESDNGTLLLYDLI 330 (401)
Q Consensus 252 P~~~~~~~~~l~~~~g~L~~~~~~~~~~~l~IW~l~~~~W~~~~~i~~~~~~~~p~~~~~~~~-il~~~~~~~l~~yd~~ 330 (401)
+....-...+..+....+.+- ...+..+.|.-.+.+ ++.++.+.-+....+++.++|+ +++.+...++..+|.+
T Consensus 357 ~~~~~VrY~r~~~~~e~~vig--t~dgD~l~iyd~~~~---e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vidid 431 (668)
T COG4946 357 GKKGGVRYRRIQVDPEGDVIG--TNDGDKLGIYDKDGG---EVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDID 431 (668)
T ss_pred CCCCceEEEEEccCCcceEEe--ccCCceEEEEecCCc---eEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEec
Confidence 443322222233323322221 134445555554442 1233433222334467777776 6667888899999999
Q ss_pred CCcEEEEeecc
Q 038747 331 VEEVRDLGRFT 341 (401)
Q Consensus 331 t~~~~~v~~~~ 341 (401)
++..+.++...
T Consensus 432 ngnv~~idkS~ 442 (668)
T COG4946 432 NGNVRLIDKSE 442 (668)
T ss_pred CCCeeEecccc
Confidence 99999987653
No 73
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=61.02 E-value=1.9e+02 Score=30.74 Aligned_cols=32 Identities=3% Similarity=0.219 Sum_probs=25.0
Q ss_pred CCceeEECceEEEEEeecCCCCccEEEEEEcCCc--eEeE
Q 038747 211 HFKSTNLNGVFYWLVSRDDGDHSNIMLSFHISDE--EFRE 248 (401)
Q Consensus 211 ~~~~v~~~G~lywl~~~~~~~~~~~Il~fD~~~e--~~~~ 248 (401)
...++.++|.+|..+..+ .++++|..++ .|+.
T Consensus 187 e~TPlvvgg~lYv~t~~~------~V~ALDa~TGk~lW~~ 220 (764)
T TIGR03074 187 QATPLKVGDTLYLCTPHN------KVIALDAATGKEKWKF 220 (764)
T ss_pred ccCCEEECCEEEEECCCC------eEEEEECCCCcEEEEE
Confidence 357899999999877655 8999998754 4664
No 74
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=60.99 E-value=1.2e+02 Score=26.80 Aligned_cols=198 Identities=13% Similarity=0.111 Sum_probs=102.1
Q ss_pred ccccceEEEee--CCceEEEccccccccccCCCCCCCCCcceeeeeeEEEEEeCCCCCeEEEEEEEEeccccCCCCCcce
Q 038747 106 GPYDGIFCLCD--DSLIFLWNPATKECRTLPNYSNFLPTCATFLYENAIFGLDHTSGDYKVVFICELWNEQIEAPYEHSL 183 (401)
Q Consensus 106 ~s~~GLl~~~~--~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~ 183 (401)
+..+|-|.+.+ ..+++.++|.+++...+..+. ..|+.++...+.+ +++. ...
T Consensus 8 d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~------------~~G~~~~~~~g~l-~v~~-------------~~~ 61 (246)
T PF08450_consen 8 DPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG------------PNGMAFDRPDGRL-YVAD-------------SGG 61 (246)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS------------EEEEEEECTTSEE-EEEE-------------TTC
T ss_pred ECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC------------CceEEEEccCCEE-EEEE-------------cCc
Confidence 34456666665 458999999998876544332 3455556322322 2221 234
Q ss_pred EEEEEcCCCCccccCCCCccc-ceeeeCCCceeEECceEEEEEeecCCC-Cc--cEEEEEEcCCceEeEe----cCCCCC
Q 038747 184 VAIYTSTTDSWRVSKGNVEWI-PYDFKSHFKSTNLNGVFYWLVSRDDGD-HS--NIMLSFHISDEEFREI----ERPRIP 255 (401)
Q Consensus 184 ~~vyss~t~~W~~~~~~~~~~-~~~~~~~~~~v~~~G~lywl~~~~~~~-~~--~~Il~fD~~~e~~~~i----~lP~~~ 255 (401)
..+++..++.++.+....... +... ...-.+--+|.+|.-....... .. ..|..++.. ++...+ ..|.
T Consensus 62 ~~~~d~~~g~~~~~~~~~~~~~~~~~-~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pN-- 137 (246)
T PF08450_consen 62 IAVVDPDTGKVTVLADLPDGGVPFNR-PNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPN-- 137 (246)
T ss_dssp EEEEETTTTEEEEEEEEETTCSCTEE-EEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEE--
T ss_pred eEEEecCCCcEEEEeeccCCCcccCC-CceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCccccc--
Confidence 566688888877664321000 1100 0012233468877655433111 11 579999999 444433 2222
Q ss_pred CCCCceeEE-EcCe-EEEEeecCCCCeEEEEEEcC--CcEEEEEEE-cCCCC--cccceEEeeCCEEEEEe-eCCeEEEE
Q 038747 256 YSSHESLGL-FNNS-VSLLHFDKSSHYIDIWLMSD--MNWIQQFAI-GPFLG--VMSPRGIWKNNAVLMES-DNGTLLLY 327 (401)
Q Consensus 256 ~~~~~~l~~-~~g~-L~~~~~~~~~~~l~IW~l~~--~~W~~~~~i-~~~~~--~~~p~~~~~~~~il~~~-~~~~l~~y 327 (401)
+ +.. -+|+ |.+.. .....+..+-++. ..+.....+ ..... ...-+++..+|.|++.. ..+++..|
T Consensus 138 ----G-i~~s~dg~~lyv~d--s~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~ 210 (246)
T PF08450_consen 138 ----G-IAFSPDGKTLYVAD--SFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVF 210 (246)
T ss_dssp ----E-EEEETTSSEEEEEE--TTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEE
T ss_pred ----c-eEECCcchheeecc--cccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEE
Confidence 1 332 3444 43333 4444444444443 335544433 22221 22336777789998874 57789999
Q ss_pred ECCCCcEEEEeec
Q 038747 328 DLIVEEVRDLGRF 340 (401)
Q Consensus 328 d~~t~~~~~v~~~ 340 (401)
|++.+.++.+...
T Consensus 211 ~p~G~~~~~i~~p 223 (246)
T PF08450_consen 211 DPDGKLLREIELP 223 (246)
T ss_dssp ETTSCEEEEEE-S
T ss_pred CCCccEEEEEcCC
Confidence 9997767777766
No 75
>cd01207 Ena-Vasp Enabled-VASP-type homology (EVH1) domain. Enabled-VASP-type homology (EVH1) domain. The EVH1 domain binds to other proteins at proline rich sequences. It is found in proteins involved in cytoskeletal reorganization such as Enabled and VASP. Ena-VASP type EVH1 domains specifically recognize FPPPP motifs in the focal adhesion proteins zyxin and vinculin, and the ActA surface protein of Listeria monocytogenes. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=60.53 E-value=28 Score=26.90 Aligned_cols=42 Identities=10% Similarity=0.088 Sum_probs=29.3
Q ss_pred ceEEEccccccccccCCCCCCCCCcceeeeeeEEEEEeCCCCCeEEEEEE
Q 038747 119 LIFLWNPATKECRTLPNYSNFLPTCATFLYENAIFGLDHTSGDYKVVFIC 168 (401)
Q Consensus 119 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~ 168 (401)
.+.+.||.|+.|. |..+.. .....+.+-+++..+.|+|+...
T Consensus 10 ~Vm~~d~~tk~W~--P~~~~~------~~ls~V~~~~~~~~~~yrIvg~~ 51 (111)
T cd01207 10 SVMVYDDSNKKWV--PAGGGS------QGFSRVQIYHHPRNNTFRVVGRK 51 (111)
T ss_pred EeeEEcCCCCcEE--cCCCCC------CCcceEEEEEcCCCCEEEEEEee
Confidence 5788999999865 433310 01355677788888999999865
No 76
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=60.04 E-value=15 Score=22.20 Aligned_cols=26 Identities=8% Similarity=0.064 Sum_probs=18.7
Q ss_pred CceeEECceEEEEEeecCCCCccEEEEEEcCC
Q 038747 212 FKSTNLNGVFYWLVSRDDGDHSNIMLSFHISD 243 (401)
Q Consensus 212 ~~~v~~~G~lywl~~~~~~~~~~~Il~fD~~~ 243 (401)
..+++.+|.+|.-..++ .+.+||.++
T Consensus 15 ~~~~v~~g~vyv~~~dg------~l~ald~~t 40 (40)
T PF13570_consen 15 SSPAVAGGRVYVGTGDG------NLYALDAAT 40 (40)
T ss_dssp S--EECTSEEEEE-TTS------EEEEEETT-
T ss_pred cCCEEECCEEEEEcCCC------EEEEEeCCC
Confidence 35688899999888766 999999864
No 77
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=58.88 E-value=1.7e+02 Score=27.89 Aligned_cols=114 Identities=9% Similarity=0.103 Sum_probs=67.3
Q ss_pred ECceEEEEEeecCCCCccEEEEEEcCCc------eEeEecCCCCCCCC---Cce-eEEE--cCeEEEEe-ecC----CCC
Q 038747 217 LNGVFYWLVSRDDGDHSNIMLSFHISDE------EFREIERPRIPYSS---HES-LGLF--NNSVSLLH-FDK----SSH 279 (401)
Q Consensus 217 ~~G~lywl~~~~~~~~~~~Il~fD~~~e------~~~~i~lP~~~~~~---~~~-l~~~--~g~L~~~~-~~~----~~~ 279 (401)
.+|..+|.+..+ .|..+|+++. .|..+..-.....+ ... +..- +++|.+.. ... ...
T Consensus 204 ~dg~~~~vs~eG------~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~ 277 (352)
T TIGR02658 204 KSGRLVWPTYTG------KIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTA 277 (352)
T ss_pred CCCcEEEEecCC------eEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCC
Confidence 379999999876 8999996543 24443221111111 111 2222 34455432 101 112
Q ss_pred eEEEEEEcCCcEEEEEEEcCCCCcccceEEeeCCE-EEEEe--eCCeEEEEECCCCc-EEEE
Q 038747 280 YIDIWLMSDMNWIQQFAIGPFLGVMSPRGIWKNNA-VLMES--DNGTLLLYDLIVEE-VRDL 337 (401)
Q Consensus 280 ~l~IW~l~~~~W~~~~~i~~~~~~~~p~~~~~~~~-il~~~--~~~~l~~yd~~t~~-~~~v 337 (401)
.=+||+++-..+..+.+|.... ....+++.++++ .++.. ..+.+..+|..+++ ++.+
T Consensus 278 ~~~V~ViD~~t~kvi~~i~vG~-~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 278 SRFLFVVDAKTGKRLRKIELGH-EIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred CCEEEEEECCCCeEEEEEeCCC-ceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 2389999998899988886432 334578888888 65543 35569999998875 4555
No 78
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=58.11 E-value=1.7e+02 Score=27.75 Aligned_cols=106 Identities=7% Similarity=0.053 Sum_probs=60.9
Q ss_pred CceeEECceEEEEEeecCCCCccEEEEEEcCCce--EeEecCCCCCCCCCceeEEEcCeEEEEeecCCCCeEEEEEEcC-
Q 038747 212 FKSTNLNGVFYWLVSRDDGDHSNIMLSFHISDEE--FREIERPRIPYSSHESLGLFNNSVSLLHFDKSSHYIDIWLMSD- 288 (401)
Q Consensus 212 ~~~v~~~G~lywl~~~~~~~~~~~Il~fD~~~e~--~~~i~lP~~~~~~~~~l~~~~g~L~~~~~~~~~~~l~IW~l~~- 288 (401)
..++..+|.+|.....+ .+.++|..+.+ |.. +.+. .......+|.+.+.. ....+..+-.++
T Consensus 235 ~~p~~~~~~vy~~~~~g------~l~a~d~~tG~~~W~~-~~~~-----~~~p~~~~~~vyv~~---~~G~l~~~d~~tG 299 (377)
T TIGR03300 235 GDPVVDGGQVYAVSYQG------RVAALDLRSGRVLWKR-DASS-----YQGPAVDDNRLYVTD---ADGVVVALDRRSG 299 (377)
T ss_pred CccEEECCEEEEEEcCC------EEEEEECCCCcEEEee-ccCC-----ccCceEeCCEEEEEC---CCCeEEEEECCCC
Confidence 35677889999877665 89999997654 433 2221 111344556654332 233444444433
Q ss_pred -CcEEEEEEEcCCCCcccceEEeeCCEEEEEeeCCeEEEEECCCCcEEE
Q 038747 289 -MNWIQQFAIGPFLGVMSPRGIWKNNAVLMESDNGTLLLYDLIVEEVRD 336 (401)
Q Consensus 289 -~~W~~~~~i~~~~~~~~p~~~~~~~~il~~~~~~~l~~yd~~t~~~~~ 336 (401)
..|.... +. ......|+. .++.+++...++.++++|.+++++..
T Consensus 300 ~~~W~~~~-~~-~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~ 344 (377)
T TIGR03300 300 SELWKNDE-LK-YRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVA 344 (377)
T ss_pred cEEEcccc-cc-CCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 3465421 11 111233433 35678887888899999999887654
No 79
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=56.95 E-value=7.4 Score=36.17 Aligned_cols=39 Identities=15% Similarity=0.388 Sum_probs=33.0
Q ss_pred CccCCCCHHHHHHHHhcCCh--------hhhhhhhccchhhhcccCC
Q 038747 8 DSSMLMPEDVRLEILSRLPV--------KSLMRLRCVCKSWYALIEN 46 (401)
Q Consensus 8 ~~~~~LP~Dll~~IL~rLP~--------~sl~r~r~VcK~W~~li~~ 46 (401)
..|..||.+++.+|+.|.-- ++.+.+..|||.|+.+..+
T Consensus 43 ~~~~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~~ 89 (355)
T KOG2502|consen 43 SLWAALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISKE 89 (355)
T ss_pred chhhcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhccc
Confidence 57889999999999999863 3688999999999986543
No 80
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=56.61 E-value=1.8e+02 Score=27.57 Aligned_cols=109 Identities=14% Similarity=0.114 Sum_probs=55.4
Q ss_pred ceeEECceEEEEEeecCCCCccEEEEEEcCCce--EeEecCCCCCCCCCceeEEEcCeEEEEeecCCCCeEEEEEEcC--
Q 038747 213 KSTNLNGVFYWLVSRDDGDHSNIMLSFHISDEE--FREIERPRIPYSSHESLGLFNNSVSLLHFDKSSHYIDIWLMSD-- 288 (401)
Q Consensus 213 ~~v~~~G~lywl~~~~~~~~~~~Il~fD~~~e~--~~~i~lP~~~~~~~~~l~~~~g~L~~~~~~~~~~~l~IW~l~~-- 288 (401)
.++..+|.+|.-..++ .+.+||..+++ |+. .++.... ......++.+.+. .....+..|-.+.
T Consensus 100 ~p~v~~~~v~v~~~~g------~l~ald~~tG~~~W~~-~~~~~~~---~~p~v~~~~v~v~---~~~g~l~a~d~~tG~ 166 (377)
T TIGR03300 100 GVGADGGLVFVGTEKG------EVIALDAEDGKELWRA-KLSSEVL---SPPLVANGLVVVR---TNDGRLTALDAATGE 166 (377)
T ss_pred ceEEcCCEEEEEcCCC------EEEEEECCCCcEeeee-ccCceee---cCCEEECCEEEEE---CCCCeEEEEEcCCCc
Confidence 4556678888655444 89999986544 543 3332211 1122334443322 1233344443333
Q ss_pred CcEEEEEEEcCC--CCcccceEEeeCCEEEEEeeCCeEEEEECCCCcEEE
Q 038747 289 MNWIQQFAIGPF--LGVMSPRGIWKNNAVLMESDNGTLLLYDLIVEEVRD 336 (401)
Q Consensus 289 ~~W~~~~~i~~~--~~~~~p~~~~~~~~il~~~~~~~l~~yd~~t~~~~~ 336 (401)
..|......... .....|+.. ++.+++...++.++++|+++++...
T Consensus 167 ~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W 214 (377)
T TIGR03300 167 RLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLW 214 (377)
T ss_pred eeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEee
Confidence 345543321110 011233332 4666666677889999999987544
No 81
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=55.48 E-value=1.9e+02 Score=27.47 Aligned_cols=138 Identities=13% Similarity=0.067 Sum_probs=76.5
Q ss_pred cceEEEEEcCCCCccccCCCCcccceeeeCCCc-eeEECceEEEEEeecCCCCccEEEEEEcCCce--EeEecCCCCCCC
Q 038747 181 HSLVAIYTSTTDSWRVSKGNVEWIPYDFKSHFK-STNLNGVFYWLVSRDDGDHSNIMLSFHISDEE--FREIERPRIPYS 257 (401)
Q Consensus 181 ~~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~~-~v~~~G~lywl~~~~~~~~~~~Il~fD~~~e~--~~~i~lP~~~~~ 257 (401)
.........++..|...... .....+ . .. ++..+|.+|.....+ .|.+||.++.+ |..-... ....
T Consensus 34 ~~~~~~~~~g~~~W~~~~~~--~~~~~~-~-~~~~~~~dg~v~~~~~~G------~i~A~d~~~g~~~W~~~~~~-~~~~ 102 (370)
T COG1520 34 LVAVANNTSGTLLWSVSLGS--GGGGIY-A-GPAPADGDGTVYVGTRDG------NIFALNPDTGLVKWSYPLLG-AVAQ 102 (370)
T ss_pred ceEEEcccCcceeeeeeccc--CccceE-e-ccccEeeCCeEEEecCCC------cEEEEeCCCCcEEecccCcC-ccee
Confidence 34455566667778643111 011111 1 12 599999999986655 89999998877 6543333 1111
Q ss_pred CCceeEEEcCeEEEEeecCCCCeEEEEEEcC----CcEEEEEEEcCCCCcccceEEeeCCEEEEEeeCCeEEEEECCCCc
Q 038747 258 SHESLGLFNNSVSLLHFDKSSHYIDIWLMSD----MNWIQQFAIGPFLGVMSPRGIWKNNAVLMESDNGTLLLYDLIVEE 333 (401)
Q Consensus 258 ~~~~l~~~~g~L~~~~~~~~~~~l~IW~l~~----~~W~~~~~i~~~~~~~~p~~~~~~~~il~~~~~~~l~~yd~~t~~ 333 (401)
........+|++.+-. ... .++.++. ..|.....- . .....| .+..++.+++.+.++.+++.|..|++
T Consensus 103 ~~~~~~~~~G~i~~g~--~~g---~~y~ld~~~G~~~W~~~~~~-~-~~~~~~-~v~~~~~v~~~s~~g~~~al~~~tG~ 174 (370)
T COG1520 103 LSGPILGSDGKIYVGS--WDG---KLYALDASTGTLVWSRNVGG-S-PYYASP-PVVGDGTVYVGTDDGHLYALNADTGT 174 (370)
T ss_pred ccCceEEeCCeEEEec--ccc---eEEEEECCCCcEEEEEecCC-C-eEEecC-cEEcCcEEEEecCCCeEEEEEccCCc
Confidence 1222444477754332 111 6666665 455554322 0 101111 22236677777677889999999998
Q ss_pred EEEE
Q 038747 334 VRDL 337 (401)
Q Consensus 334 ~~~v 337 (401)
.++.
T Consensus 175 ~~W~ 178 (370)
T COG1520 175 LKWT 178 (370)
T ss_pred EEEE
Confidence 7655
No 82
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=54.91 E-value=1.8e+02 Score=27.06 Aligned_cols=107 Identities=12% Similarity=-0.031 Sum_probs=60.1
Q ss_pred ceEEEEEeecCCCCccEEEEEEcCCceEeEecCCCCCCCCCceeEEEcCeEEEEeecCCCCeEEEEEEcC-CcEEEEEEE
Q 038747 219 GVFYWLVSRDDGDHSNIMLSFHISDEEFREIERPRIPYSSHESLGLFNNSVSLLHFDKSSHYIDIWLMSD-MNWIQQFAI 297 (401)
Q Consensus 219 G~lywl~~~~~~~~~~~Il~fD~~~e~~~~i~lP~~~~~~~~~l~~~~g~L~~~~~~~~~~~l~IW~l~~-~~W~~~~~i 297 (401)
+.+||.--.+ ..|+.+|..++.-+.++.|..... ..+...+|.|.... . .+.++..+. ..|++...+
T Consensus 37 ~~L~w~DI~~-----~~i~r~~~~~g~~~~~~~p~~~~~--~~~~d~~g~Lv~~~--~---g~~~~~~~~~~~~t~~~~~ 104 (307)
T COG3386 37 GALLWVDILG-----GRIHRLDPETGKKRVFPSPGGFSS--GALIDAGGRLIACE--H---GVRLLDPDTGGKITLLAEP 104 (307)
T ss_pred CEEEEEeCCC-----CeEEEecCCcCceEEEECCCCccc--ceeecCCCeEEEEc--c---ccEEEeccCCceeEEeccc
Confidence 4678886554 599999999999999999886522 11333344443221 1 122223233 555555544
Q ss_pred cCCCCccc--ceEEeeCCEEEEEeeC------------CeEEEEECCCCcEEEE
Q 038747 298 GPFLGVMS--PRGIWKNNAVLMESDN------------GTLLLYDLIVEEVRDL 337 (401)
Q Consensus 298 ~~~~~~~~--p~~~~~~~~il~~~~~------------~~l~~yd~~t~~~~~v 337 (401)
.......+ -..+.++|.+++.+.. +.++.+|+..+..+.+
T Consensus 105 ~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~ 158 (307)
T COG3386 105 EDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLL 158 (307)
T ss_pred cCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEee
Confidence 32211122 2556667777775333 3588889855544444
No 83
>cd01206 Homer Homer type EVH1 domain. Homer type EVH1 domain. Homer is a synaptic scaffolding protein, involved in neuronal signaling. It contains an EVH1 domain, which binds to both neurotransmitter receptors, such as the metabotropic glutamate receptor (mGluR) and to other scaffolding proteins via PPXXF motifs, in order to target them to the synaptic junction. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=49.93 E-value=64 Score=24.77 Aligned_cols=40 Identities=18% Similarity=0.265 Sum_probs=29.6
Q ss_pred CceEEEccccc-cccccCCCCCCCCCcceeeeeeEEEEEeCCCCCeEEEEEE
Q 038747 118 SLIFLWNPATK-ECRTLPNYSNFLPTCATFLYENAIFGLDHTSGDYKVVFIC 168 (401)
Q Consensus 118 ~~~~V~NP~T~-~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~ 168 (401)
..++++||.|+ .|.. ..+. ...+.+-+|+..+.|+||.+.
T Consensus 11 A~V~~yd~~tKk~WvP--s~~~---------~~~V~~y~~~~~ntfRIi~~~ 51 (111)
T cd01206 11 AHVFQIDPKTKKNWIP--ASKH---------AVTVSYFYDSTRNVYRIISVG 51 (111)
T ss_pred eEEEEECCCCcceeEe--CCCC---------ceeEEEEecCCCcEEEEEEec
Confidence 36789999986 7763 3221 246778889999999999864
No 84
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=49.67 E-value=2.3e+02 Score=26.76 Aligned_cols=55 Identities=15% Similarity=0.328 Sum_probs=34.5
Q ss_pred eEEEEEcCCCCccccCCCCcccceeeeCCCceeEECceEEEEEeecCCCCccEEEEEEcCCc
Q 038747 183 LVAIYTSTTDSWRVSKGNVEWIPYDFKSHFKSTNLNGVFYWLVSRDDGDHSNIMLSFHISDE 244 (401)
Q Consensus 183 ~~~vyss~t~~W~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~Il~fD~~~e 244 (401)
...-|+.++..|+....- .+|+ .+.+.++..-=-|+.-...+ ....|-+.|+.+.
T Consensus 200 GTysfDt~~~~W~~~GdW--~LPF----~G~a~y~~el~~W~Gls~~~-~~~~lca~dv~~~ 254 (342)
T PF07893_consen 200 GTYSFDTESHEWRKHGDW--MLPF----HGQAEYVPELDLWFGLSSDG-GGGHLCACDVSSA 254 (342)
T ss_pred EEEEEEcCCcceeeccce--ecCc----CCccEECCCcCeEEEeccCC-CCcEEEEEecccc
Confidence 455566677899998754 4453 24666666655676654421 1148899999764
No 85
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=49.54 E-value=73 Score=25.06 Aligned_cols=54 Identities=15% Similarity=0.058 Sum_probs=34.1
Q ss_pred eCCEEEEEee-----CCeEEEEECCCCcEEEEeec-cCCCCCceEEEEEEecceeeCCCc
Q 038747 311 KNNAVLMESD-----NGTLLLYDLIVEEVRDLGRF-TRGTLGTAILTYCYKESLVRLKRV 364 (401)
Q Consensus 311 ~~~~il~~~~-----~~~l~~yd~~t~~~~~v~~~-~~~~~~~~~~~~~y~eslv~~~~~ 364 (401)
-||.++.... ...+++||+++++++.+... ............-|...|..+...
T Consensus 4 inGvly~~a~~~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~ 63 (129)
T PF08268_consen 4 INGVLYWLAWSEDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYN 63 (129)
T ss_pred ECcEEEeEEEECCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEec
Confidence 3677755422 46799999999999999884 101111144566677777665433
No 86
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=47.28 E-value=1.6e+02 Score=30.95 Aligned_cols=98 Identities=15% Similarity=0.219 Sum_probs=57.1
Q ss_pred EEEEEEcCCceEeE---ecCCCCCCCCCceeEEEcCe-EEEEeecCCCCeEEEEEEcC--------CcEEEEEEEcCCCC
Q 038747 235 IMLSFHISDEEFRE---IERPRIPYSSHESLGLFNNS-VSLLHFDKSSHYIDIWLMSD--------MNWIQQFAIGPFLG 302 (401)
Q Consensus 235 ~Il~fD~~~e~~~~---i~lP~~~~~~~~~l~~~~g~-L~~~~~~~~~~~l~IW~l~~--------~~W~~~~~i~~~~~ 302 (401)
....||.....|.. |..|......-.-+.....+ -|+.. ..+..+.||++.+ ..|..+.. .....
T Consensus 433 KFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta--~~dg~~KiW~~~~~~n~~k~~s~W~c~~i-~sy~k 509 (792)
T KOG1963|consen 433 KFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTA--SVDGDFKIWVFTDDSNIYKKSSNWTCKAI-GSYHK 509 (792)
T ss_pred EEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEe--ccCCeEEEEEEecccccCcCccceEEeee-ecccc
Confidence 44556666666654 45666432211101111111 22222 4677899999954 68998664 32210
Q ss_pred -cccceEEeeCCEEEEEeeCCeEEEEECCC-CcEE
Q 038747 303 -VMSPRGIWKNNAVLMESDNGTLLLYDLIV-EEVR 335 (401)
Q Consensus 303 -~~~p~~~~~~~~il~~~~~~~l~~yd~~t-~~~~ 335 (401)
-....++.++|.++....++.+-.||..+ ++++
T Consensus 510 ~~i~a~~fs~dGslla~s~~~~Itiwd~~~~~~l~ 544 (792)
T KOG1963|consen 510 TPITALCFSQDGSLLAVSFDDTITIWDYDTKNELL 544 (792)
T ss_pred CcccchhhcCCCcEEEEecCCEEEEecCCChhhhh
Confidence 01234566789999988888999999998 4433
No 87
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=45.33 E-value=1.5e+02 Score=25.31 Aligned_cols=60 Identities=23% Similarity=0.347 Sum_probs=35.9
Q ss_pred CeEEEEEEcC--CcEEEEEEEcCCCCcccce-EEee-CCEEEEE--------eeCCeEEEEECCCCcEEEEee
Q 038747 279 HYIDIWLMSD--MNWIQQFAIGPFLGVMSPR-GIWK-NNAVLME--------SDNGTLLLYDLIVEEVRDLGR 339 (401)
Q Consensus 279 ~~l~IW~l~~--~~W~~~~~i~~~~~~~~p~-~~~~-~~~il~~--------~~~~~l~~yd~~t~~~~~v~~ 339 (401)
..=.||+.+. ..|.. ..|++...-+.|- ..|- +..|++. ..+|.|+.||+.|++++.+.-
T Consensus 86 giGkIYIkn~~~~~~~~-L~i~~~~~k~sPK~i~WiDD~~L~vIIG~a~GTvS~GGnLy~~nl~tg~~~~ly~ 157 (200)
T PF15525_consen 86 GIGKIYIKNLNNNNWWS-LQIDQNEEKYSPKYIEWIDDNNLAVIIGYAHGTVSKGGNLYKYNLNTGNLTELYE 157 (200)
T ss_pred cceeEEEEecCCCceEE-EEecCcccccCCceeEEecCCcEEEEEccccceEccCCeEEEEEccCCceeEeee
Confidence 3446888875 66633 3345544344442 2232 3334332 246789999999999988855
No 88
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=42.10 E-value=2.9e+02 Score=25.72 Aligned_cols=110 Identities=14% Similarity=0.211 Sum_probs=58.6
Q ss_pred ceeEECceEEEEEeecCCCCccEEEEEEcCCceE-eEecCCCCCCCCCceeEEEcCeEE---EEeecCCCCeEEEEEEcC
Q 038747 213 KSTNLNGVFYWLVSRDDGDHSNIMLSFHISDEEF-REIERPRIPYSSHESLGLFNNSVS---LLHFDKSSHYIDIWLMSD 288 (401)
Q Consensus 213 ~~v~~~G~lywl~~~~~~~~~~~Il~fD~~~e~~-~~i~lP~~~~~~~~~l~~~~g~L~---~~~~~~~~~~l~IW~l~~ 288 (401)
.+|.++|-. ++..+ ....|-.||+.+..= ..+--|... .......+.+. ++. ......+.||..
T Consensus 47 tavAVs~~~--~aSGs---sDetI~IYDm~k~~qlg~ll~Hags----itaL~F~~~~S~shLlS-~sdDG~i~iw~~-- 114 (362)
T KOG0294|consen 47 TALAVSGPY--VASGS---SDETIHIYDMRKRKQLGILLSHAGS----ITALKFYPPLSKSHLLS-GSDDGHIIIWRV-- 114 (362)
T ss_pred eEEEeccee--EeccC---CCCcEEEEeccchhhhcceeccccc----eEEEEecCCcchhheee-ecCCCcEEEEEc--
Confidence 567777643 23222 235899999976542 222222110 00111112221 222 256667888876
Q ss_pred CcEEEEEEEcCCCCcccceEEeeCCEEEEE-eeCCeEEEEECCCCcE
Q 038747 289 MNWIQQFAIGPFLGVMSPRGIWKNNAVLME-SDNGTLLLYDLIVEEV 334 (401)
Q Consensus 289 ~~W~~~~~i~~~~~~~~p~~~~~~~~il~~-~~~~~l~~yd~~t~~~ 334 (401)
++|..+.++.+...-...+++++.|++-+. .++..+-.||+-+++.
T Consensus 115 ~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~ 161 (362)
T KOG0294|consen 115 GSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRV 161 (362)
T ss_pred CCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCcc
Confidence 558888888766544555777777776553 4455566666655543
No 89
>PF13013 F-box-like_2: F-box-like domain
Probab=41.83 E-value=26 Score=27.02 Aligned_cols=29 Identities=17% Similarity=0.228 Sum_probs=23.4
Q ss_pred cCCCCHHHHHHHHhcCChhhhhhhhccch
Q 038747 10 SMLMPEDVRLEILSRLPVKSLMRLRCVCK 38 (401)
Q Consensus 10 ~~~LP~Dll~~IL~rLP~~sl~r~r~VcK 38 (401)
..+||+||+..|+..-....+...-..|+
T Consensus 22 l~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 22 LLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred hhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 56799999999999999888766555555
No 90
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=41.63 E-value=3.4e+02 Score=26.43 Aligned_cols=128 Identities=12% Similarity=0.183 Sum_probs=69.3
Q ss_pred CcceEEEEEcCCCCccccCCCCcccceeeeCCCceeEECceEEEEEeecCCCCccEEEEEEcCCc-eEeEecCCCCCCCC
Q 038747 180 EHSLVAIYTSTTDSWRVSKGNVEWIPYDFKSHFKSTNLNGVFYWLVSRDDGDHSNIMLSFHISDE-EFREIERPRIPYSS 258 (401)
Q Consensus 180 ~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~Il~fD~~~e-~~~~i~lP~~~~~~ 258 (401)
....+.||+..++. .... +|. ....-..+.+...=||++..... ..|..+|++.- .|..++++......
T Consensus 367 ~d~~vkiwdlks~~-~~a~-----Fpg-ht~~vk~i~FsENGY~Lat~add---~~V~lwDLRKl~n~kt~~l~~~~~v~ 436 (506)
T KOG0289|consen 367 PDGVVKIWDLKSQT-NVAK-----FPG-HTGPVKAISFSENGYWLATAADD---GSVKLWDLRKLKNFKTIQLDEKKEVN 436 (506)
T ss_pred CCceEEEEEcCCcc-cccc-----CCC-CCCceeEEEeccCceEEEEEecC---CeEEEEEehhhcccceeeccccccce
Confidence 34567777777665 2221 121 11122566677777999865522 35999999754 56777887743211
Q ss_pred CceeEEEcCeEEEEeecCCCCeEEEEEEcC--CcEEEEEEEcCCCCcccceEEeeCCEEEEEeeCC
Q 038747 259 HESLGLFNNSVSLLHFDKSSHYIDIWLMSD--MNWIQQFAIGPFLGVMSPRGIWKNNAVLMESDNG 322 (401)
Q Consensus 259 ~~~l~~~~g~L~~~~~~~~~~~l~IW~l~~--~~W~~~~~i~~~~~~~~p~~~~~~~~il~~~~~~ 322 (401)
.. .....|+... ..+..+.|..-+. .+|.+........+...-+.|.+...++..+..+
T Consensus 437 s~-~fD~SGt~L~----~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd 497 (506)
T KOG0289|consen 437 SL-SFDQSGTYLG----IAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMD 497 (506)
T ss_pred eE-EEcCCCCeEE----eecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccch
Confidence 11 1112233211 1245677777766 8999987654322233345555555555555443
No 91
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=40.30 E-value=3.8e+02 Score=28.16 Aligned_cols=80 Identities=11% Similarity=0.105 Sum_probs=49.2
Q ss_pred ceeEECceEEEEEeecC-----CC-CccEEEEEEcCCceEeEecCCCCCCCC-----Cce-----eEEEcCeEEEEeecC
Q 038747 213 KSTNLNGVFYWLVSRDD-----GD-HSNIMLSFHISDEEFREIERPRIPYSS-----HES-----LGLFNNSVSLLHFDK 276 (401)
Q Consensus 213 ~~v~~~G~lywl~~~~~-----~~-~~~~Il~fD~~~e~~~~i~lP~~~~~~-----~~~-----l~~~~g~L~~~~~~~ 276 (401)
..++..+.-||+..... .. ....+++.+.+++.|....+|....-. +.+ +-..++.|++-+ .
T Consensus 250 ~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~--~ 327 (893)
T KOG0291|consen 250 KIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGC--S 327 (893)
T ss_pred ceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcC--C
Confidence 45777788888875532 11 235899999999999999999853211 111 111233444332 4
Q ss_pred CCCeEEEEEEcCCcEEEE
Q 038747 277 SSHYIDIWLMSDMNWIQQ 294 (401)
Q Consensus 277 ~~~~l~IW~l~~~~W~~~ 294 (401)
.-..+-||.++.++.+++
T Consensus 328 klgQLlVweWqsEsYVlK 345 (893)
T KOG0291|consen 328 KLGQLLVWEWQSESYVLK 345 (893)
T ss_pred ccceEEEEEeeccceeee
Confidence 456789998877555444
No 92
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=36.86 E-value=2.2e+02 Score=26.97 Aligned_cols=57 Identities=18% Similarity=0.211 Sum_probs=38.5
Q ss_pred CCCCeEEEEEEcCCcEEEEEEEcCCCCcccceEEeeCCEEEEEe-eCCeEEEEECCCCcE
Q 038747 276 KSSHYIDIWLMSDMNWIQQFAIGPFLGVMSPRGIWKNNAVLMES-DNGTLLLYDLIVEEV 334 (401)
Q Consensus 276 ~~~~~l~IW~l~~~~W~~~~~i~~~~~~~~p~~~~~~~~il~~~-~~~~l~~yd~~t~~~ 334 (401)
..+..+.+|-+.-+ .-+.++.....-.+-++|.++|+.++.. +++.|-+||+++++-
T Consensus 311 SrDktIk~wdv~tg--~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~c 368 (406)
T KOG0295|consen 311 SRDKTIKIWDVSTG--MCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQC 368 (406)
T ss_pred cccceEEEEeccCC--eEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEecccee
Confidence 56778999988763 2233333333344556777788888864 566799999998873
No 93
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=35.44 E-value=1.6e+02 Score=26.87 Aligned_cols=65 Identities=14% Similarity=0.202 Sum_probs=45.0
Q ss_pred EEcCeEEEEeecCCCCeEEEEEEcC-CcEEEEEEEcCCCCcccceEEeeCCEEEEEeeCCeEEEEECCCCcE
Q 038747 264 LFNNSVSLLHFDKSSHYIDIWLMSD-MNWIQQFAIGPFLGVMSPRGIWKNNAVLMESDNGTLLLYDLIVEEV 334 (401)
Q Consensus 264 ~~~g~L~~~~~~~~~~~l~IW~l~~-~~W~~~~~i~~~~~~~~p~~~~~~~~il~~~~~~~l~~yd~~t~~~ 334 (401)
.-+|+||... ....++.+|-|.+ .. .+.++... ....++|.++.-.+..-....+-.||++++..
T Consensus 201 SpDGslcasG--gkdg~~~LwdL~~~k~---lysl~a~~-~v~sl~fspnrywL~~at~~sIkIwdl~~~~~ 266 (315)
T KOG0279|consen 201 SPDGSLCASG--GKDGEAMLWDLNEGKN---LYSLEAFD-IVNSLCFSPNRYWLCAATATSIKIWDLESKAV 266 (315)
T ss_pred CCCCCEEecC--CCCceEEEEEccCCce---eEeccCCC-eEeeEEecCCceeEeeccCCceEEEeccchhh
Confidence 3478898775 6777899999998 33 45554333 34457777776666665555688999988864
No 94
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=35.13 E-value=33 Score=25.62 Aligned_cols=25 Identities=24% Similarity=0.436 Sum_probs=22.6
Q ss_pred CccCCCCHHHHHHHHhcCChhhhhh
Q 038747 8 DSSMLMPEDVRLEILSRLPVKSLMR 32 (401)
Q Consensus 8 ~~~~~LP~Dll~~IL~rLP~~sl~r 32 (401)
..|..||.|+-..||..|.-++|..
T Consensus 70 ~~w~~LP~EIk~~Il~~L~~~dL~~ 94 (97)
T PF09372_consen 70 NYWNILPIEIKYKILEYLSNKDLKK 94 (97)
T ss_pred CchhhCCHHHHHHHHHcCCHHHHHH
Confidence 5699999999999999999988864
No 95
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=34.01 E-value=1.1e+02 Score=28.01 Aligned_cols=67 Identities=7% Similarity=0.160 Sum_probs=45.0
Q ss_pred CcceEEEEEcCCCCccccCCCCc-ccceeeeCCCceeEECceEEEEEeecCCCCccEEEEEEcCCceEeEecC
Q 038747 180 EHSLVAIYTSTTDSWRVSKGNVE-WIPYDFKSHFKSTNLNGVFYWLVSRDDGDHSNIMLSFHISDEEFREIER 251 (401)
Q Consensus 180 ~~~~~~vyss~t~~W~~~~~~~~-~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~Il~fD~~~e~~~~i~l 251 (401)
.+..+++|+..+.+|........ ............+++.|.+-.-. .....+..||+.+.+|..+.-
T Consensus 14 ~C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~-----~~~~~la~yd~~~~~w~~~~~ 81 (281)
T PF12768_consen 14 PCPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNG-----TNSSNLATYDFKNQTWSSLGG 81 (281)
T ss_pred CCCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECC-----CCceeEEEEecCCCeeeecCC
Confidence 47889999999999998875311 11111122346677777665322 123589999999999988755
No 96
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=33.99 E-value=4.9e+02 Score=25.95 Aligned_cols=31 Identities=13% Similarity=0.306 Sum_probs=23.9
Q ss_pred CceeEECceEEEEEeecCCCCccEEEEEEcCCce--EeE
Q 038747 212 FKSTNLNGVFYWLVSRDDGDHSNIMLSFHISDEE--FRE 248 (401)
Q Consensus 212 ~~~v~~~G~lywl~~~~~~~~~~~Il~fD~~~e~--~~~ 248 (401)
..+++.+|.+|.....+ .+.++|..+.+ |+.
T Consensus 55 ~sPvv~~g~vy~~~~~g------~l~AlD~~tG~~~W~~ 87 (488)
T cd00216 55 GTPLVVDGDMYFTTSHS------ALFALDAATGKVLWRY 87 (488)
T ss_pred cCCEEECCEEEEeCCCC------cEEEEECCCChhhcee
Confidence 36789999999876555 89999997554 654
No 97
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=33.84 E-value=5e+02 Score=25.98 Aligned_cols=70 Identities=10% Similarity=0.254 Sum_probs=43.6
Q ss_pred CCCCeEEEEEEcC-CcEEEEEEEcCCCCcccceEEeeCCEEEEEeeCCeEEEEECCCCcEEEEeeccCCCCCceEEEEEE
Q 038747 276 KSSHYIDIWLMSD-MNWIQQFAIGPFLGVMSPRGIWKNNAVLMESDNGTLLLYDLIVEEVRDLGRFTRGTLGTAILTYCY 354 (401)
Q Consensus 276 ~~~~~l~IW~l~~-~~W~~~~~i~~~~~~~~p~~~~~~~~il~~~~~~~l~~yd~~t~~~~~v~~~~~~~~~~~~~~~~y 354 (401)
.....+.+|- +. -.|+++.. +|-. -.++++.|.+.+-...+..++.|-+++.+-.+..+ +++ ..+..|
T Consensus 387 gqdk~v~lW~-~~k~~wt~~~~-d~~~----~~~fhpsg~va~Gt~~G~w~V~d~e~~~lv~~~~d--~~~---ls~v~y 455 (626)
T KOG2106|consen 387 GQDKHVRLWN-DHKLEWTKIIE-DPAE----CADFHPSGVVAVGTATGRWFVLDTETQDLVTIHTD--NEQ---LSVVRY 455 (626)
T ss_pred cCcceEEEcc-CCceeEEEEec-Ccee----EeeccCcceEEEeeccceEEEEecccceeEEEEec--CCc---eEEEEE
Confidence 4566788888 44 78888653 3321 24566666555556677888889888776666665 332 345555
Q ss_pred ec
Q 038747 355 KE 356 (401)
Q Consensus 355 ~e 356 (401)
.+
T Consensus 456 sp 457 (626)
T KOG2106|consen 456 SP 457 (626)
T ss_pred cC
Confidence 44
No 98
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=29.77 E-value=4.3e+02 Score=24.01 Aligned_cols=139 Identities=12% Similarity=0.055 Sum_probs=0.0
Q ss_pred CCcceEEEEEcCCCCccccCCCCcccceeeeCCCceeEECceEEEEEeecCCCCccEEEEEEcC-CceEeEecCCCCCCC
Q 038747 179 YEHSLVAIYTSTTDSWRVSKGNVEWIPYDFKSHFKSTNLNGVFYWLVSRDDGDHSNIMLSFHIS-DEEFREIERPRIPYS 257 (401)
Q Consensus 179 ~~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~Il~fD~~-~e~~~~i~lP~~~~~ 257 (401)
.....+..|+..|++=.... .+|...... .-..+++.+|-++... ...+.||.. =+.-..++.| .
T Consensus 65 yG~S~l~~~d~~tg~~~~~~----~l~~~~FgE-Git~~~d~l~qLTWk~-----~~~f~yd~~tl~~~~~~~y~----~ 130 (264)
T PF05096_consen 65 YGQSSLRKVDLETGKVLQSV----PLPPRYFGE-GITILGDKLYQLTWKE-----GTGFVYDPNTLKKIGTFPYP----G 130 (264)
T ss_dssp TTEEEEEEEETTTSSEEEEE----E-TTT--EE-EEEEETTEEEEEESSS-----SEEEEEETTTTEEEEEEE-S----S
T ss_pred CCcEEEEEEECCCCcEEEEE----ECCccccce-eEEEECCEEEEEEecC-----CeEEEEccccceEEEEEecC----C
Q ss_pred CCceeEEEcCeEEEEeecCCCCeEEEEEEcCCcEEEEEEEcCCCCcccceEEee-----CCEEEEE-eeCCeEEEEECCC
Q 038747 258 SHESLGLFNNSVSLLHFDKSSHYIDIWLMSDMNWIQQFAIGPFLGVMSPRGIWK-----NNAVLME-SDNGTLLLYDLIV 331 (401)
Q Consensus 258 ~~~~l~~~~g~L~~~~~~~~~~~l~IW~l~~~~W~~~~~i~~~~~~~~p~~~~~-----~~~il~~-~~~~~l~~yd~~t 331 (401)
....|..-+..|. .....-.++.++......+.+|.... ...|+...+ +|.|+-. .....++..|++|
T Consensus 131 EGWGLt~dg~~Li-----~SDGS~~L~~~dP~~f~~~~~i~V~~-~g~pv~~LNELE~i~G~IyANVW~td~I~~Idp~t 204 (264)
T PF05096_consen 131 EGWGLTSDGKRLI-----MSDGSSRLYFLDPETFKEVRTIQVTD-NGRPVSNLNELEYINGKIYANVWQTDRIVRIDPET 204 (264)
T ss_dssp S--EEEECSSCEE-----EE-SSSEEEEE-TTT-SEEEEEE-EE-TTEE---EEEEEEETTEEEEEETTSSEEEEEETTT
T ss_pred cceEEEcCCCEEE-----EECCccceEEECCcccceEEEEEEEE-CCEECCCcEeEEEEcCEEEEEeCCCCeEEEEeCCC
Q ss_pred CcEEEE
Q 038747 332 EEVRDL 337 (401)
Q Consensus 332 ~~~~~v 337 (401)
+++...
T Consensus 205 G~V~~~ 210 (264)
T PF05096_consen 205 GKVVGW 210 (264)
T ss_dssp -BEEEE
T ss_pred CeEEEE
No 99
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=28.91 E-value=4.3e+02 Score=23.69 Aligned_cols=181 Identities=15% Similarity=0.096 Sum_probs=90.7
Q ss_pred ccceEEEee--CCceEEEccccccccccCCCCCCCCCcceeeeeeEEEEEeCCCCCeEEEEEEEEeccccCCCCCcceEE
Q 038747 108 YDGIFCLCD--DSLIFLWNPATKECRTLPNYSNFLPTCATFLYENAIFGLDHTSGDYKVVFICELWNEQIEAPYEHSLVA 185 (401)
Q Consensus 108 ~~GLl~~~~--~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~ 185 (401)
.+|=-|+.. +..+-+|||..+....--.... +. ..-.+..+|.+ |+-.- ...-.+.
T Consensus 27 ~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG-----~E--VlD~~~s~Dns----kf~s~-----------GgDk~v~ 84 (307)
T KOG0316|consen 27 VDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHG-----HE--VLDAALSSDNS----KFASC-----------GGDKAVQ 84 (307)
T ss_pred cCCCEEEEcCCCceEEeecccccceeeeecCCC-----ce--eeecccccccc----ccccC-----------CCCceEE
Confidence 345555554 4588999999886653322211 11 11222223321 21111 1245788
Q ss_pred EEEcCCC----CccccCCCCcccceeeeCCCceeEECceEEEEEeecCCCCccEEEEEEcCCceEeEecCCCCCCCCCce
Q 038747 186 IYTSTTD----SWRVSKGNVEWIPYDFKSHFKSTNLNGVFYWLVSRDDGDHSNIMLSFHISDEEFREIERPRIPYSSHES 261 (401)
Q Consensus 186 vyss~t~----~W~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~Il~fD~~~e~~~~i~lP~~~~~~~~~ 261 (401)
+++..|| .||-... .....-....++|.+.|.+- ..+-++|-.+.++..|++-....+.-.
T Consensus 85 vwDV~TGkv~Rr~rgH~a---qVNtV~fNeesSVv~SgsfD-----------~s~r~wDCRS~s~ePiQildea~D~V~- 149 (307)
T KOG0316|consen 85 VWDVNTGKVDRRFRGHLA---QVNTVRFNEESSVVASGSFD-----------SSVRLWDCRSRSFEPIQILDEAKDGVS- 149 (307)
T ss_pred EEEcccCeeeeecccccc---eeeEEEecCcceEEEecccc-----------ceeEEEEcccCCCCccchhhhhcCcee-
Confidence 9999886 5776543 22222223346666666443 478899999999888876544332111
Q ss_pred eEEEcCeEEEEeecCCCCeEEEEEEcCCcEEEEEEEcCCCCcccc---eEEeeCCEEEEE-eeCCeEEEEECCCCcE
Q 038747 262 LGLFNNSVSLLHFDKSSHYIDIWLMSDMNWIQQFAIGPFLGVMSP---RGIWKNNAVLME-SDNGTLLLYDLIVEEV 334 (401)
Q Consensus 262 l~~~~g~L~~~~~~~~~~~l~IW~l~~~~W~~~~~i~~~~~~~~p---~~~~~~~~il~~-~~~~~l~~yd~~t~~~ 334 (401)
-+...+..-+.. ....++..+-+..+ ++. ...+..| +.+.+++...+. .-+..+-..|-+|+++
T Consensus 150 Si~v~~heIvaG--S~DGtvRtydiR~G------~l~-sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGkl 217 (307)
T KOG0316|consen 150 SIDVAEHEIVAG--SVDGTVRTYDIRKG------TLS-SDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKL 217 (307)
T ss_pred EEEecccEEEee--ccCCcEEEEEeecc------eee-hhhcCCcceeEEecCCCCEEEEeeccceeeecccchhHH
Confidence 122233332332 23334444333221 110 1122334 455666665554 4455677777777765
No 100
>PF15408 PH_7: Pleckstrin homology domain
Probab=28.76 E-value=23 Score=25.65 Aligned_cols=23 Identities=26% Similarity=0.736 Sum_probs=19.1
Q ss_pred hhhhhhhccchhhhcccCChhhH
Q 038747 28 KSLMRLRCVCKSWYALIENPKFI 50 (401)
Q Consensus 28 ~sl~r~r~VcK~W~~li~~~~F~ 50 (401)
+-.+-.+-|||+|-....+|+|.
T Consensus 77 ~~FA~S~~~~~~Wi~~mN~~s~~ 99 (104)
T PF15408_consen 77 QCFASSKKVCQSWIQVMNSPSFR 99 (104)
T ss_pred hhhhhHHHHHHHHHHHhcChhhh
Confidence 44566788999999999999985
No 101
>PF08683 CAMSAP_CKK: Microtubule-binding calmodulin-regulated spectrin-associated; InterPro: IPR014797 This is the C-terminal domain of a family of eumetazoan proteins collectively defined as calmodulin-regulated spectrin-associated, or CAMSAP, proteins. CAMSAP proteins carry an N-terminal region that includes the CH domain, a central region including a predicted coiled-coil and this C-terminal, or CKK, domain - defined as being present in CAMSAP, KIAA1078 and KIAA1543, The C-terminal domain is the part of the CAMSAP proteins that binds to microtubules. The domain appears to act by producing inhibition of neurite extension, probably by blocking microtubule function. CKK represents a domain that has evolved with the metazoa []. The structure of a murine hypothetical protein from RIKEN cDNA has shown the domain to adopt a mainly beta barrel structure with an associated alpha-helical hairpin. ; PDB: 1UGJ_A.
Probab=28.42 E-value=1.4e+02 Score=23.65 Aligned_cols=56 Identities=13% Similarity=0.193 Sum_probs=31.4
Q ss_pred cccceEEEeeCC----ceEEEccccccccccCCCCCCCCCcceeeeeeEEEEEeCCCCCeEEE
Q 038747 107 PYDGIFCLCDDS----LIFLWNPATKECRTLPNYSNFLPTCATFLYENAIFGLDHTSGDYKVV 165 (401)
Q Consensus 107 s~~GLl~~~~~~----~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv 165 (401)
+-+=+||+++.. .+|.+||.+.+...+-.... ..........-+-||....+|+.+
T Consensus 47 ~~hflILfrd~~~~fRglY~~~~~~~~~~ki~G~gP---~~i~~~mv~~~~KYdSg~K~F~~i 106 (123)
T PF08683_consen 47 ANHFLILFRDAGCQFRGLYSYDPESEELVKIYGTGP---RVITPSMVDKFYKYDSGSKQFKPI 106 (123)
T ss_dssp -S-EEEEESSSS-SEEEEEEE-TTSS-EEEEESSS----SEE-TTTEEEEEEEETTTTEEEE-
T ss_pred CCeEEEEEecCCCceEEEEEEeCCCCeEEEEEccCc---CccCHHHHHHHhcccccCceeeec
Confidence 334466777532 78889999988777644432 112223455567778877778766
No 102
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=27.67 E-value=1.3e+02 Score=17.26 Aligned_cols=38 Identities=13% Similarity=0.093 Sum_probs=22.5
Q ss_pred EEEEEEEcCCCCcccceEEeeCCEEEEE-eeCCeEEEEE
Q 038747 291 WIQQFAIGPFLGVMSPRGIWKNNAVLME-SDNGTLLLYD 328 (401)
Q Consensus 291 W~~~~~i~~~~~~~~p~~~~~~~~il~~-~~~~~l~~yd 328 (401)
|..+.++........-+.+.+++..++. ..++.+..||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 5556666544333444666777666665 4456777775
No 103
>PF08350 DUF1724: Domain of unknown function (DUF1724); InterPro: IPR013561 This domain of unknown function has so far only been found at the C terminus of archaean proteins, including several transcriptional regulators of the ArsR family (see IPR001845 from INTERPRO).
Probab=26.70 E-value=58 Score=22.34 Aligned_cols=27 Identities=22% Similarity=0.591 Sum_probs=22.5
Q ss_pred CCCCCceeeecCcceeEEeeecceeee
Q 038747 372 PFDIPWHIIEDNQLDITLFGRNSRFDI 398 (401)
Q Consensus 372 ~~~~p~~~~~~~~~~~~~~~~~~~~~~ 398 (401)
...+|-.+..+..+-+.||.+++|||.
T Consensus 10 ~i~~~~l~VTD~f~~l~Lf~~~G~yD~ 36 (64)
T PF08350_consen 10 EIKLPALTVTDKFMSLSLFNKDGRYDH 36 (64)
T ss_pred CCceeEEEEEcCeEEEEEEcCCCcCcC
Confidence 445566788999999999999999984
No 104
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=26.52 E-value=2.3e+02 Score=27.56 Aligned_cols=63 Identities=16% Similarity=0.250 Sum_probs=40.3
Q ss_pred CCCCeEEEEEEcCCcEEEEEEEcCCCCcccceEEeeCCEEEEE-eeCCeEEEEECCC-CcEEEEeec
Q 038747 276 KSSHYIDIWLMSDMNWIQQFAIGPFLGVMSPRGIWKNNAVLME-SDNGTLLLYDLIV-EEVRDLGRF 340 (401)
Q Consensus 276 ~~~~~l~IW~l~~~~W~~~~~i~~~~~~~~p~~~~~~~~il~~-~~~~~l~~yd~~t-~~~~~v~~~ 340 (401)
.....+.||-+++.. .+..+++..+-..-+.|.+||-.+.. .+++.+..||++. +.++.+.+.
T Consensus 366 t~d~~vkiwdlks~~--~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~ 430 (506)
T KOG0289|consen 366 TPDGVVKIWDLKSQT--NVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLD 430 (506)
T ss_pred CCCceEEEEEcCCcc--ccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeecc
Confidence 567789999999833 22334443333445788888877665 5566699999853 344555444
No 105
>PLN00181 protein SPA1-RELATED; Provisional
Probab=26.10 E-value=8.3e+02 Score=26.10 Aligned_cols=97 Identities=8% Similarity=0.131 Sum_probs=50.3
Q ss_pred cEEEEEEcCCceEeEecCCCCCCCCCceeEEEcCeEEEEeecCCCCeEEEEEEcC----CcEEEEEEEcCCCCcccceEE
Q 038747 234 NIMLSFHISDEEFREIERPRIPYSSHESLGLFNNSVSLLHFDKSSHYIDIWLMSD----MNWIQQFAIGPFLGVMSPRGI 309 (401)
Q Consensus 234 ~~Il~fD~~~e~~~~i~lP~~~~~~~~~l~~~~g~L~~~~~~~~~~~l~IW~l~~----~~W~~~~~i~~~~~~~~p~~~ 309 (401)
..|..+|+.+..-....+....... ..+...++...+.. .....+.||-+.. ..|..+..+.........+++
T Consensus 640 g~I~iwD~~~~~~~~~~~~~h~~~V-~~v~f~~~~~lvs~--s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~ 716 (793)
T PLN00181 640 HKVYYYDLRNPKLPLCTMIGHSKTV-SYVRFVDSSTLVSS--STDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGL 716 (793)
T ss_pred CeEEEEECCCCCccceEecCCCCCE-EEEEEeCCCEEEEE--ECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEE
Confidence 4788888876431111111110000 01222344433333 4566899999865 246555555432222233566
Q ss_pred eeCCEEEEE-eeCCeEEEEECCCCc
Q 038747 310 WKNNAVLME-SDNGTLLLYDLIVEE 333 (401)
Q Consensus 310 ~~~~~il~~-~~~~~l~~yd~~t~~ 333 (401)
..++.++.. ..++.+..|+..+..
T Consensus 717 s~~~~~lasgs~D~~v~iw~~~~~~ 741 (793)
T PLN00181 717 SVSDGYIATGSETNEVFVYHKAFPM 741 (793)
T ss_pred cCCCCEEEEEeCCCEEEEEECCCCC
Confidence 666665554 457789999976553
No 106
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=25.73 E-value=2.8e+02 Score=24.92 Aligned_cols=84 Identities=12% Similarity=0.120 Sum_probs=0.0
Q ss_pred CCCCCCCCCceeEEEcCeEEEEeecCCCCeEEEEEEcC--------CcEEEEEEEc----CCCCcccceEEeeCCEEEEE
Q 038747 251 RPRIPYSSHESLGLFNNSVSLLHFDKSSHYIDIWLMSD--------MNWIQQFAIG----PFLGVMSPRGIWKNNAVLME 318 (401)
Q Consensus 251 lP~~~~~~~~~l~~~~g~L~~~~~~~~~~~l~IW~l~~--------~~W~~~~~i~----~~~~~~~p~~~~~~~~il~~ 318 (401)
+|....+....-+...+.+-+.. ....+.=|...+ ..|..+.... +.+++-...-.-+.+.|++.
T Consensus 56 v~eqahdgpiy~~~f~d~~Lls~---gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~A 132 (325)
T KOG0649|consen 56 VPEQAHDGPIYYLAFHDDFLLSG---GDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFA 132 (325)
T ss_pred eeccccCCCeeeeeeehhheeec---cCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEe
Q ss_pred eeCCeEEEEECCCCcEEEE
Q 038747 319 SDNGTLLLYDLIVEEVRDL 337 (401)
Q Consensus 319 ~~~~~l~~yd~~t~~~~~v 337 (401)
.+++.++..|+++++++..
T Consensus 133 gGD~~~y~~dlE~G~i~r~ 151 (325)
T KOG0649|consen 133 GGDGVIYQVDLEDGRIQRE 151 (325)
T ss_pred cCCeEEEEEEecCCEEEEE
No 107
>cd00837 EVH1 EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. The EVH1 domain binds to other proteins at proline rich sequences in either FPPPP or PPXXF motifs. It is found in the cytoskeletal reorganization proteins Enabled VASP, and WASP, and in the synaptic scaffolding protein Homer. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=25.05 E-value=2.7e+02 Score=21.04 Aligned_cols=41 Identities=12% Similarity=0.094 Sum_probs=30.2
Q ss_pred CceEEEccccccccccCCCCCCCCCcceeeeeeEEEEEeCCCCCeEEEEEEE
Q 038747 118 SLIFLWNPATKECRTLPNYSNFLPTCATFLYENAIFGLDHTSGDYKVVFICE 169 (401)
Q Consensus 118 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~ 169 (401)
-++++.+|.+++|...- . ....+.+..|+..+.|.|+....
T Consensus 9 a~v~~~~~~~~~W~~~~--~---------~~g~v~~~~d~~~~~y~i~~~~~ 49 (104)
T cd00837 9 AQVYTADPSTGKWVPAS--G---------GTGAVSLVKDSTRNTYRIRGVDI 49 (104)
T ss_pred EEEEEECCCCCceEECC--C---------CeEEEEEEEECCCCEEEEEEEec
Confidence 36788999999998531 1 13567788899888998887753
No 108
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=24.87 E-value=5.2e+02 Score=26.17 Aligned_cols=113 Identities=13% Similarity=0.157 Sum_probs=58.9
Q ss_pred cccceEEEeeC--CceEEEccccccccccCCCCCCCCCcceeeeeeEEEEEeCCCCCeEEEEEEEEeccccCCCCCcceE
Q 038747 107 PYDGIFCLCDD--SLIFLWNPATKECRTLPNYSNFLPTCATFLYENAIFGLDHTSGDYKVVFICELWNEQIEAPYEHSLV 184 (401)
Q Consensus 107 s~~GLl~~~~~--~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~ 184 (401)
..+|-+|++.. .++.||||..++... .... |+ ....+..-|-|.+++=.|+-.. ....+
T Consensus 59 n~dG~lL~SGSDD~r~ivWd~~~~Kllh--sI~T----gH--taNIFsvKFvP~tnnriv~sgA-----------gDk~i 119 (758)
T KOG1310|consen 59 NADGELLASGSDDTRLIVWDPFEYKLLH--SIST----GH--TANIFSVKFVPYTNNRIVLSGA-----------GDKLI 119 (758)
T ss_pred cCCCCEEeecCCcceEEeecchhcceee--eeec----cc--ccceeEEeeeccCCCeEEEecc-----------CcceE
Confidence 55788888754 489999999544332 2221 11 1344555667777765554432 24577
Q ss_pred EEEEcCCCCccccCCCCcccceeee-----CCCceeEECc-eEEEEEeecCCCCccEEEEEEcCC
Q 038747 185 AIYTSTTDSWRVSKGNVEWIPYDFK-----SHFKSTNLNG-VFYWLVSRDDGDHSNIMLSFHISD 243 (401)
Q Consensus 185 ~vyss~t~~W~~~~~~~~~~~~~~~-----~~~~~v~~~G-~lywl~~~~~~~~~~~Il~fD~~~ 243 (401)
.+|+..+.+=+..+.........+. ...-++.-+| ..+|-+.++ ..|.-+|+..
T Consensus 120 ~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasED-----GtirQyDiRE 179 (758)
T KOG1310|consen 120 KLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASED-----GTIRQYDIRE 179 (758)
T ss_pred EEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCC-----cceeeecccC
Confidence 8888764322211111000000000 0112233345 688888766 3788888865
No 109
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=23.09 E-value=9.4e+02 Score=25.69 Aligned_cols=26 Identities=27% Similarity=0.413 Sum_probs=20.1
Q ss_pred ccccceEEEeeCCceEEEcccccccc
Q 038747 106 GPYDGIFCLCDDSLIFLWNPATKECR 131 (401)
Q Consensus 106 ~s~~GLl~~~~~~~~~V~NP~T~~~~ 131 (401)
+|++=|+.+.....+.+||-.||+..
T Consensus 123 ~Srd~LlaIh~ss~lvLwntdtG~k~ 148 (1062)
T KOG1912|consen 123 DSRDVLLAIHGSSTLVLWNTDTGEKF 148 (1062)
T ss_pred cchheeEEecCCcEEEEEEccCCcee
Confidence 45566677777788999999999854
No 110
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=20.68 E-value=8.8e+02 Score=24.45 Aligned_cols=68 Identities=9% Similarity=0.115 Sum_probs=43.7
Q ss_pred cceEEEEEcCCCCccccCCC-CcccceeeeCCCceeEECceEEEEEeecC------------C--CCccEEEEEEcCCce
Q 038747 181 HSLVAIYTSTTDSWRVSKGN-VEWIPYDFKSHFKSTNLNGVFYWLVSRDD------------G--DHSNIMLSFHISDEE 245 (401)
Q Consensus 181 ~~~~~vyss~t~~W~~~~~~-~~~~~~~~~~~~~~v~~~G~lywl~~~~~------------~--~~~~~Il~fD~~~e~ 245 (401)
.-.....+++|-.|...... ..++|... .+++.+++++|-....-. . .-...+-++|+.+..
T Consensus 229 LgDLW~Ldl~Tl~W~kp~~~G~~PlPRSL---Hsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~ 305 (830)
T KOG4152|consen 229 LGDLWTLDLDTLTWNKPSLSGVAPLPRSL---HSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMA 305 (830)
T ss_pred ccceeEEecceeecccccccCCCCCCccc---ccceeecceeEEecceeeeeccccccccccceeeeccceeeeeecchh
Confidence 34566788899999987754 23444322 356778888886532110 0 012478899999999
Q ss_pred EeEecC
Q 038747 246 FREIER 251 (401)
Q Consensus 246 ~~~i~l 251 (401)
|..+-+
T Consensus 306 W~tl~~ 311 (830)
T KOG4152|consen 306 WETLLM 311 (830)
T ss_pred eeeeee
Confidence 988644
No 111
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=20.01 E-value=4.3e+02 Score=27.17 Aligned_cols=98 Identities=16% Similarity=0.240 Sum_probs=52.9
Q ss_pred EEEEEEcCCceEeE----ecCCCCCCCCCceeEEEcCeEEEEeecCCCCeEEEEEEcCCcEEEEE-EEcCCCCcccceEE
Q 038747 235 IMLSFHISDEEFRE----IERPRIPYSSHESLGLFNNSVSLLHFDKSSHYIDIWLMSDMNWIQQF-AIGPFLGVMSPRGI 309 (401)
Q Consensus 235 ~Il~fD~~~e~~~~----i~lP~~~~~~~~~l~~~~g~L~~~~~~~~~~~l~IW~l~~~~W~~~~-~i~~~~~~~~p~~~ 309 (401)
.|.-||.....|+. +.-|.........+.-..|..+++.. .++.++..|-++...=.-.. -++ ..+-..-+++
T Consensus 75 ~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsa-sGDsT~r~Wdvk~s~l~G~~~~~G-H~~SvkS~cf 152 (720)
T KOG0321|consen 75 GIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSA-SGDSTIRPWDVKTSRLVGGRLNLG-HTGSVKSECF 152 (720)
T ss_pred ceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEc-cCCceeeeeeeccceeecceeecc-cccccchhhh
Confidence 89999999988881 12232211111123333466665553 67789999999882111111 011 1112334566
Q ss_pred eeCCEEEEEe--eCCeEEEEECCCCcE
Q 038747 310 WKNNAVLMES--DNGTLLLYDLIVEEV 334 (401)
Q Consensus 310 ~~~~~il~~~--~~~~l~~yd~~t~~~ 334 (401)
.+.+..+|.. .++.+..||++-+.+
T Consensus 153 ~~~n~~vF~tGgRDg~illWD~R~n~~ 179 (720)
T KOG0321|consen 153 MPTNPAVFCTGGRDGEILLWDCRCNGV 179 (720)
T ss_pred ccCCCcceeeccCCCcEEEEEEeccch
Confidence 6655444443 356788888776653
Done!