BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 038748
         (482 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|224065166|ref|XP_002301697.1| predicted protein [Populus trichocarpa]
 gi|222843423|gb|EEE80970.1| predicted protein [Populus trichocarpa]
          Length = 499

 Score =  619 bits (1595), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 295/462 (63%), Positives = 360/462 (77%), Gaps = 1/462 (0%)

Query: 22  KRSTFASHLDVPNLPPTIKTLCEIIANTPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHP 81
           K+ +F S+L+ PNLPPTIK LCEIIANTPS  VE VLD T+IRV Q  VEQVLK SYS P
Sbjct: 35  KKPSFQSYLETPNLPPTIKLLCEIIANTPSHNVESVLDATVIRVKQTDVEQVLKLSYSSP 94

Query: 82  GPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASV 141
           G AVKFFRW+  QLNDKHSPY+WNLVVDLLGKN +FDAMW AIKSMK+EN++SLATFASV
Sbjct: 95  GSAVKFFRWAGLQLNDKHSPYSWNLVVDLLGKNSMFDAMWGAIKSMKRENLVSLATFASV 154

Query: 142 FSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIK 201
           FSSYV+ DRVK+AI TF+VM+QYGC  +V ALNSLLSAICR+G+T DA +FL V   RI 
Sbjct: 155 FSSYVIVDRVKEAIMTFEVMDQYGCTRNVVALNSLLSAICREGRTFDAVEFLHVAKNRIL 214

Query: 202 PDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYET 261
           PD D+YAILLEGWEKE +VA+A+ TF +MV  VGWDP NVPAYD++L TLL G DG+ E 
Sbjct: 215 PDADSYAILLEGWEKEMNVASARTTFADMVSMVGWDPRNVPAYDTFLSTLLMGYDGLREA 274

Query: 262 VNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMIS 321
           +     M +RGC PG+ FF+LA EECL   ++R A  IW  +V R+GFRPD  +YN+MI 
Sbjct: 275 MKHFDTMKDRGCFPGVKFFRLALEECLKCNDVRAAMLIWETLVARVGFRPDIQLYNLMIG 334

Query: 322 LYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVL 381
           ++CY N+T  A K LDEM+YNG FPD QTYN+LF++L+K +KL EAS + NEM+KNE   
Sbjct: 335 IHCYDNQTDIANKFLDEMIYNGVFPDSQTYNVLFQYLIKYKKLKEASFVLNEMIKNEFFP 394

Query: 382 NHENCRAAVRVYMDSDDPYVAIKFWKYMIENHC-SDLSETGNLLVAGLCDMHMLPEAVKY 440
           N  NC AA++ YMDS +PY+AIK WK M+EN+  SDL E GN+LV  L   HM+PEAVKY
Sbjct: 395 NKTNCNAAIKAYMDSKEPYMAIKVWKCMMENYGESDLEEAGNMLVVELRYHHMVPEAVKY 454

Query: 441 AKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKCKAH 482
           A+ M EKGI++T  +LSKLKQ+L + +K  +YEELL+K KAH
Sbjct: 455 AEVMIEKGIKLTSSSLSKLKQMLNEEKKPILYEELLRKWKAH 496


>gi|255583417|ref|XP_002532468.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527826|gb|EEF29924.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 510

 Score =  607 bits (1566), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 299/460 (65%), Positives = 349/460 (75%)

Query: 22  KRSTFASHLDVPNLPPTIKTLCEIIANTPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHP 81
           K  TF S+L+ PNL P IK LCEIIA  PS TVE +LD+T + VSQ  VEQV+K SYS P
Sbjct: 50  KHPTFPSYLETPNLSPKIKLLCEIIAKIPSSTVETILDETGLYVSQYDVEQVIKLSYSFP 109

Query: 82  GPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASV 141
           GPAVKFFRW+ ++L D HSPY+WNLVVDLLGKNCLFDAMWDAIKSMK + ++SLATFASV
Sbjct: 110 GPAVKFFRWAGFRLQDNHSPYSWNLVVDLLGKNCLFDAMWDAIKSMKSKELVSLATFASV 169

Query: 142 FSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIK 201
           F SYV A RVKDAI TF+VM QYG   DV ALNSLLSAICRDGKT+DA  FL V    IK
Sbjct: 170 FGSYVTAGRVKDAIFTFEVMNQYGVVRDVVALNSLLSAICRDGKTVDAVDFLFVAKNSIK 229

Query: 202 PDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYET 261
           PD DT+AILLEGWEKE ++ N+++TF EMV E+GWDP N PAYD++L TLL G  G  E 
Sbjct: 230 PDADTFAILLEGWEKELNLVNSRQTFDEMVREIGWDPANTPAYDTFLCTLLMGRIGFNEV 289

Query: 262 VNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMIS 321
           +  L+ M E+ C PGM FF+ A EECL   ++R A  IW  M+   GFRPD  MYN+MIS
Sbjct: 290 IEFLEIMKEKRCCPGMRFFRAAIEECLKVNDVRVAGLIWEVMMETNGFRPDIEMYNLMIS 349

Query: 322 LYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVL 381
           LYCY+N T  A++ LDEMVYNG FPD QTYN+LF+FL+K RKL EAS LFNEM+KNE + 
Sbjct: 350 LYCYTNNTDIALRFLDEMVYNGVFPDRQTYNLLFQFLIKSRKLKEASVLFNEMIKNECLP 409

Query: 382 NHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYA 441
           N  NC AAVRV+M S DPY+AIK WK MIEN+  DL ETGNLL+  LCD+HM PEAVKYA
Sbjct: 410 NQANCSAAVRVFMHSKDPYMAIKVWKCMIENYELDLEETGNLLIVELCDLHMDPEAVKYA 469

Query: 442 KGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKCKA 481
           + M  KGI+VT   + KLK  L +ARKE VYE LL+K KA
Sbjct: 470 ESMIGKGIKVTSPTMEKLKLCLKQARKEFVYERLLRKWKA 509


>gi|225453152|ref|XP_002272930.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Vitis vinifera]
          Length = 502

 Score =  580 bits (1495), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 286/501 (57%), Positives = 354/501 (70%), Gaps = 20/501 (3%)

Query: 1   MARNDKRRHHDDPSPDP--------------------HNKRKRSTFASHLDVPNLPPTIK 40
           M +  KR +H   SP P                    H   KR +F ++L+ PNL P ++
Sbjct: 1   MGKKHKRPNHTASSPPPLHHDHRNKRHSSSTTDSATHHQTPKRPSFPTYLETPNLSPKVR 60

Query: 41  TLCEIIANTPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHS 100
            LCEIIANTPS TVE+VL  T IRVS E VE  LK SY  PG AVKFFRWS +QLND HS
Sbjct: 61  LLCEIIANTPSSTVEEVLHDTAIRVSPEDVEDSLKLSYGFPGSAVKFFRWSGHQLNDNHS 120

Query: 101 PYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDV 160
           PY+WNLVVD+LGKN LFDAMWDA+KSMKK+ +LSLATFAS+FSSYV+ADRV++AI TFDV
Sbjct: 121 PYSWNLVVDMLGKNFLFDAMWDAVKSMKKQGLLSLATFASIFSSYVIADRVREAIMTFDV 180

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDV 220
           MEQYGC  D+ ALNSLLSAICRDG+T+ A +FLR V G I+PD DTYAILLEGWE E + 
Sbjct: 181 MEQYGCPRDIVALNSLLSAICRDGRTVQAAEFLRNVRGLIRPDADTYAILLEGWESEGNC 240

Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFF 280
             A++TF EMV+++GWDP NV AYDS+L  LL G DG  E +   + M +R C+PGM F+
Sbjct: 241 GAARQTFDEMVMDIGWDPGNVSAYDSFLNALLHGPDGRREAMKFFEIMRDRQCSPGMRFY 300

Query: 281 KLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMV 340
           ++  +EC+   + +GA+ +W  M+ R   RPDT MYN MI+L+C  +    A  +LDEMV
Sbjct: 301 RIGLQECVKTSDSKGAQLLWQTMLSRNICRPDTEMYNSMIALHCSCDNIVMARGMLDEMV 360

Query: 341 YNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPY 400
            NGAFPD +TYN+LF FL++ RKL EA  +F+EMV+NE V +  NC AAVR+Y+D  D Y
Sbjct: 361 CNGAFPDSETYNVLFRFLIRRRKLEEAFSIFSEMVQNECVPDLTNCNAAVRIYLDLGDVY 420

Query: 401 VAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLK 460
            AIK WKY+IENH S L ETGNLLV GL D   +PEAVKYAK M  +GI++T   LSKLK
Sbjct: 421 KAIKVWKYIIENHDSGLEETGNLLVTGLRDHDRIPEAVKYAKDMIVRGIKLTSSTLSKLK 480

Query: 461 QILIKARKEAVYEELLKKCKA 481
             L++  K  VY+ELL+K K 
Sbjct: 481 HALVEVGKGPVYDELLRKWKT 501


>gi|296087160|emb|CBI33534.3| unnamed protein product [Vitis vinifera]
          Length = 506

 Score =  580 bits (1494), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 283/478 (59%), Positives = 349/478 (73%), Gaps = 2/478 (0%)

Query: 7   RRHHDDP--SPDPHNKRKRSTFASHLDVPNLPPTIKTLCEIIANTPSPTVEDVLDKTLIR 64
           RRH      S   H   KR +F ++L+ PNL P ++ LCEIIANTPS TVE+VL  T IR
Sbjct: 29  RRHSSSTTDSATHHQTPKRPSFPTYLETPNLSPKVRLLCEIIANTPSSTVEEVLHDTAIR 88

Query: 65  VSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAI 124
           VS E VE  LK SY  PG AVKFFRWS +QLND HSPY+WNLVVD+LGKN LFDAMWDA+
Sbjct: 89  VSPEDVEDSLKLSYGFPGSAVKFFRWSGHQLNDNHSPYSWNLVVDMLGKNFLFDAMWDAV 148

Query: 125 KSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDG 184
           KSMKK+ +LSLATFAS+FSSYV+ADRV++AI TFDVMEQYGC  D+ ALNSLLSAICRDG
Sbjct: 149 KSMKKQGLLSLATFASIFSSYVIADRVREAIMTFDVMEQYGCPRDIVALNSLLSAICRDG 208

Query: 185 KTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAY 244
           +T+ A +FLR V G I+PD DTYAILLEGWE E +   A++TF EMV+++GWDP NV AY
Sbjct: 209 RTVQAAEFLRNVRGLIRPDADTYAILLEGWESEGNCGAARQTFDEMVMDIGWDPGNVSAY 268

Query: 245 DSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMV 304
           DS+L  LL G DG  E +   + M +R C+PGM F+++  +EC+   + +GA+ +W  M+
Sbjct: 269 DSFLNALLHGPDGRREAMKFFEIMRDRQCSPGMRFYRIGLQECVKTSDSKGAQLLWQTML 328

Query: 305 GRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKL 364
            R   RPDT MYN MI+L+C  +    A  +LDEMV NGAFPD +TYN+LF FL++ RKL
Sbjct: 329 SRNICRPDTEMYNSMIALHCSCDNIVMARGMLDEMVCNGAFPDSETYNVLFRFLIRRRKL 388

Query: 365 WEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLL 424
            EA  +F+EMV+NE V +  NC AAVR+Y+D  D Y AIK WKY+IENH S L ETGNLL
Sbjct: 389 EEAFSIFSEMVQNECVPDLTNCNAAVRIYLDLGDVYKAIKVWKYIIENHDSGLEETGNLL 448

Query: 425 VAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKCKAH 482
           V GL D   +PEAVKYAK M  +GI++T   LSKLK  L++  K  VY+ELL+K K  
Sbjct: 449 VTGLRDHDRIPEAVKYAKDMIVRGIKLTSSTLSKLKHALVEVGKGPVYDELLRKWKTR 506


>gi|449445204|ref|XP_004140363.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Cucumis sativus]
          Length = 519

 Score =  560 bits (1442), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 260/474 (54%), Positives = 350/474 (73%)

Query: 7   RRHHDDPSPDPHNKRKRSTFASHLDVPNLPPTIKTLCEIIANTPSPTVEDVLDKTLIRVS 66
           + H  +PSP P +K     F S+LD PNLP  IK +CEIIAN+PS  VE  L+ T I  +
Sbjct: 42  QTHFHNPSPHPPHKNSTPHFLSYLDFPNLPFQIKLMCEIIANSPSLDVEKALEDTGIHAT 101

Query: 67  QETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKS 126
           Q+ VE+VLK SY  PG +VKFFRWS  +LND+HSPYAWNL++D+LGKN  FD MWDA+KS
Sbjct: 102 QQDVEEVLKLSYRFPGSSVKFFRWSGRKLNDQHSPYAWNLIIDMLGKNLYFDPMWDAMKS 161

Query: 127 MKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKT 186
           MK E +LSLATFASVFSSYVVA+RVKDAI  F+VM+ YGC HDV A NSLLSAICRDG T
Sbjct: 162 MKSEGLLSLATFASVFSSYVVANRVKDAIMAFEVMDTYGCPHDVVAFNSLLSAICRDGNT 221

Query: 187 IDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDS 246
            DA +FL++   +I+PD D+YAI+LEGWE E +   AK+TFGEM+ E+GWDP N PAY+S
Sbjct: 222 KDADEFLQIAKRKIRPDLDSYAIVLEGWESEGNTVCAKQTFGEMIEEIGWDPTNTPAYNS 281

Query: 247 YLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGR 306
           +L  LL+  +G+   + + +R+ ++ C PG  FFKLA +EC+   +++  +++W  ++  
Sbjct: 282 FLCVLLRDPNGLQRALVTFQRLKDKMCYPGFKFFKLALDECIKCGDIKSGKYLWNEIIQS 341

Query: 307 IGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWE 366
           I F+PDT+M+N MI+L C+ N+T  A +LLDEM+  GAFP+ +TYN+LF+FL+KGRKL +
Sbjct: 342 INFQPDTYMFNSMIALCCHQNDTDEARRLLDEMICFGAFPNAETYNLLFQFLLKGRKLRD 401

Query: 367 ASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVA 426
           AS +F+EM+KNE + +H NC AA+R+Y++S DP  AIK WK M++N+ SDL ETGN L+ 
Sbjct: 402 ASAIFDEMIKNEFIPSHANCNAAIRIYIESQDPNGAIKVWKCMLKNYDSDLEETGNFLIV 461

Query: 427 GLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKCK 480
            L D   LPEAVKYA  M ++ I++    L+KLK  L + RKE++Y+EL+ K K
Sbjct: 462 RLQDQKRLPEAVKYAHEMVDRAIKLKDSTLAKLKHSLFEVRKESMYDELMVKLK 515


>gi|356569552|ref|XP_003552963.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Glycine max]
          Length = 485

 Score =  550 bits (1418), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 265/477 (55%), Positives = 341/477 (71%)

Query: 6   KRRHHDDPSPDPHNKRKRSTFASHLDVPNLPPTIKTLCEIIANTPSPTVEDVLDKTLIRV 65
           ++R H   S      +K  TF S  D+PNLP  IK+LC +IA T + +VE  L    I V
Sbjct: 9   RKRAHPSSSSPSPISKKPQTFPSFQDIPNLPSNIKSLCHLIATTSAASVEHSLQSAAISV 68

Query: 66  SQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIK 125
           +   VE+VLK SY  PG AVKFFRWS   LND H+PY+WNLVVD+LGKN  FDAMWDAIK
Sbjct: 69  TPHDVEEVLKLSYGFPGQAVKFFRWSGRHLNDNHTPYSWNLVVDILGKNRFFDAMWDAIK 128

Query: 126 SMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGK 185
           SM KE +LSLATFASVFSSYV ADR+++AI  F++M+ Y    DV ALNSLLSAIC +G+
Sbjct: 129 SMNKEGLLSLATFASVFSSYVAADRIREAIMAFEIMDNYCVVRDVVALNSLLSAICSNGR 188

Query: 186 TIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYD 245
           T+DA  +L+V    ++PD DTYAIL+EGWE E  V  AK+TF EMVIE+GWDP NVPAYD
Sbjct: 189 TLDACDYLQVAKKLVRPDTDTYAILMEGWEGENGVVGAKETFAEMVIEIGWDPLNVPAYD 248

Query: 246 SYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVG 305
           S+L TL++G DG+ E +  +  M +R C PG+ F K A +EC+   ++R AEF W  +V 
Sbjct: 249 SFLCTLVRGPDGLLEAIKFVDSMRDRRCFPGVRFLKAALDECVKSHDVRTAEFFWEVLVV 308

Query: 306 RIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLW 365
               +P   MYN+MI L CY  +T AA ++LDEMVY GAFPD++TYN+LF+FL+KGRKL 
Sbjct: 309 GKVVQPTAEMYNLMIGLCCYRGDTDAARRMLDEMVYQGAFPDVETYNLLFKFLIKGRKLR 368

Query: 366 EASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLV 425
           EAS +F EMVKNE V   +NC AAV+ Y+D  +P +AIK WKY++EN+  DL  T N LV
Sbjct: 369 EASVVFAEMVKNECVPEQDNCDAAVKAYVDCGEPVMAIKVWKYLVENYKKDLERTANFLV 428

Query: 426 AGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKCKAH 482
            GL D++ LPEAVKYA+ M ++ I+++   +SKL+Q LIK R+E VYE+LL+K K+H
Sbjct: 429 VGLRDLNRLPEAVKYAEDMIDREIRLSSNTMSKLRQSLIKERREFVYEDLLRKSKSH 485


>gi|356539840|ref|XP_003538401.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Glycine max]
          Length = 486

 Score =  526 bits (1355), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 259/477 (54%), Positives = 338/477 (70%)

Query: 6   KRRHHDDPSPDPHNKRKRSTFASHLDVPNLPPTIKTLCEIIANTPSPTVEDVLDKTLIRV 65
           KR H   PSP     +K  TF S  D+PNLP  IK+LC +IA T + TVE  L    I V
Sbjct: 10  KRAHPSSPSPPSPISKKPQTFPSFQDIPNLPSNIKSLCHLIATTSAATVEHSLQSAAISV 69

Query: 66  SQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIK 125
               VE+VLK SY  PG +VKFFRWS   LND H+PY+WNLVVD+LG+N  FD MWDA+K
Sbjct: 70  IPHDVEEVLKLSYGFPGQSVKFFRWSGRHLNDNHTPYSWNLVVDILGRNRFFDPMWDAVK 129

Query: 126 SMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGK 185
           SM KE +LSLATFASVFSSYV ADR+++AI  F++M+ YGC  D FALNSLLSAIC +G+
Sbjct: 130 SMNKEGLLSLATFASVFSSYVAADRIREAIMAFEIMDNYGCVRDAFALNSLLSAICSNGR 189

Query: 186 TIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYD 245
           T+DA  +L+V    ++PD DTYAIL+EGWE E+ + +AK+TF EMVIE+GWDP NVPAYD
Sbjct: 190 TLDACDYLQVAKKFVRPDTDTYAILMEGWEGEKSMVSAKETFAEMVIEIGWDPANVPAYD 249

Query: 246 SYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVG 305
           S+L TL++G DG+ E +  +  M +R C PG+ F K A +EC+   ++R AEF W  +V 
Sbjct: 250 SFLCTLVRGHDGLLEAIKFVDSMRDRRCYPGVRFLKAALDECVKCHDVRTAEFFWEVLVV 309

Query: 306 RIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLW 365
               +P + MYN+MI L CY  +T AA ++L EMVY GAFPD+ TYN+LF+FL+KGRKL 
Sbjct: 310 GKVLQPTSEMYNLMIGLCCYRGDTDAARRMLHEMVYQGAFPDVVTYNLLFKFLLKGRKLR 369

Query: 366 EASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLV 425
           EAS +F EMV+NE V   +NC  AV+ Y+D  +P +AIK WK ++EN+   L +T N LV
Sbjct: 370 EASSVFAEMVQNECVPEQDNCDLAVKAYVDCGEPVMAIKVWKCLVENYKKGLEQTANFLV 429

Query: 426 AGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKCKAH 482
            GLC+++    AVKYA+ M  +GI ++   LSKL+Q L+K R+E VYE+LL+K K+H
Sbjct: 430 VGLCNLNRPQVAVKYAEDMIGRGISLSSSTLSKLRQSLVKERREYVYEDLLRKWKSH 486


>gi|449534079|ref|XP_004173996.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like, partial [Cucumis sativus]
          Length = 391

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 195/350 (55%), Positives = 260/350 (74%)

Query: 7   RRHHDDPSPDPHNKRKRSTFASHLDVPNLPPTIKTLCEIIANTPSPTVEDVLDKTLIRVS 66
           + H  +PSP P +K     F S+LD PNLP  IK +CEIIAN+PS  VE  L+ T I  +
Sbjct: 42  QTHFHNPSPHPPHKNSTPHFLSYLDFPNLPFQIKLMCEIIANSPSLDVEKALEDTGIHAT 101

Query: 67  QETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKS 126
           Q+ VE+VLK SY  PG +VKFFRWS  +LND+HSPYAWNL++D+LGKN  FD MWDA+KS
Sbjct: 102 QQDVEEVLKLSYRFPGSSVKFFRWSGRKLNDQHSPYAWNLIIDMLGKNLYFDPMWDAMKS 161

Query: 127 MKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKT 186
           MK E +LSLATFASVFSSYVVA+RVKDAI  F+VM+ YGC HDV A NSLLSAICRDG T
Sbjct: 162 MKSEGLLSLATFASVFSSYVVANRVKDAIMAFEVMDTYGCPHDVVAFNSLLSAICRDGNT 221

Query: 187 IDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDS 246
            DA +FL++   +I+PD D+YAI+LEGWE E +   AK+TFGEM+ E+GWDP N PAY+S
Sbjct: 222 KDADEFLQIAKRKIRPDLDSYAIVLEGWESEGNTVCAKQTFGEMIEEIGWDPTNTPAYNS 281

Query: 247 YLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGR 306
           +L  LL+  +G+   + + +R+ ++ C PG  FFKLA +EC+   +++  +++W  ++  
Sbjct: 282 FLCVLLRDPNGLQRALVTFQRLKDKMCYPGFKFFKLALDECIKCGDIKSGKYLWNEIIQS 341

Query: 307 IGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFE 356
           I F+PDT+M+N MI+L C+ N+T  A +LLDEM+  GAFP+ +TYN+LF+
Sbjct: 342 INFQPDTYMFNSMIALCCHQNDTDEARRLLDEMICFGAFPNAETYNLLFQ 391


>gi|255557793|ref|XP_002519926.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540972|gb|EEF42530.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 481

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 208/485 (42%), Positives = 306/485 (63%), Gaps = 9/485 (1%)

Query: 1   MARNDKRRHHDDPSPDPHNKRKRSTFASHLDVP-NLPPTIKTLCEIIANTPSPTVEDVLD 59
           M   D+   H   S  P  K K ST ++ +D+  ++  + +TL +I+       +E  L 
Sbjct: 1   MESTDEYSPHQSQSRTPKPKSK-STHSNGVDIDIDISQSARTLSDILTRVSPHDMESALS 59

Query: 60  KTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDA 119
            T I ++ + + +VLK SYS+P  AV+FFRW+    +  H+PY+WNL+VDLLGKN LF+A
Sbjct: 60  STGINLTCDIIHEVLKLSYSNPASAVEFFRWAGR--SGTHTPYSWNLMVDLLGKNQLFEA 117

Query: 120 MWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSA 179
           MWDAI+SMK+ENVLS+ATFASVF SY  A    +AI +FD+M++YG + DV A+NSLLSA
Sbjct: 118 MWDAIRSMKQENVLSMATFASVFGSYCKAGSFSEAIMSFDIMDKYGIQQDVIAVNSLLSA 177

Query: 180 IC-RDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDP 238
           IC  D +TI A +F   +  +I PD DTYAILLEGWEKE + A AK  FGEMVI VGW P
Sbjct: 178 ICNEDNQTIKAVEFFDRIKLKIPPDGDTYAILLEGWEKEGNAAKAKNIFGEMVIHVGWSP 237

Query: 239 DNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEF 298
           +N+PAY+++L  L++      +  + L+ M E+GC PG+ F+  A +  L   ++  A  
Sbjct: 238 ENMPAYNAFLNLLVRESQ-TDDAFDFLRLMKEKGCLPGLKFYSDALDMLLKRNDVLHAVP 296

Query: 299 IWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFL 358
           +W  MV   G  P+  MYN MI L C +N+   A +L D+MV++GAFPD  TY ++F  L
Sbjct: 297 MWDIMVD-TGLMPNLLMYNSMIGLLCNNNDIDNAFRLFDDMVFHGAFPDFLTYKMIFRCL 355

Query: 359 VKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLS 418
           VK +K+ +A+  F+EM+KNEN   H +C AA+ ++M  DDP +AI+ W YM+++    L 
Sbjct: 356 VKNKKVSQAASFFHEMIKNENPPTHLDCAAAITMFMGGDDPEMAIEIWNYMVDDQELPLD 415

Query: 419 ETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEA--VYEELL 476
           E+ N L+ GL ++  L E  ++A+ M ++ I +    ++KLK    K  + +   ++ L 
Sbjct: 416 ESANALLVGLGNLGRLSEVSRFAEDMLDRRINIHESTMAKLKASFYKEGRSSRDRFDSLS 475

Query: 477 KKCKA 481
           +K KA
Sbjct: 476 RKWKA 480


>gi|356560843|ref|XP_003548696.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Glycine max]
          Length = 488

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 209/487 (42%), Positives = 290/487 (59%), Gaps = 10/487 (2%)

Query: 1   MARNDKR-RHHDDPSPDPHNKRKRSTFASHLDVPNLPPTIKTLCEIIANTPSPTVEDVLD 59
           +A N  R R    PS +P    + + F SHLD PN+  T + LC+I+  +    +E  L 
Sbjct: 4   LAENPGRSRDLKHPSKNPTKPPQPNQFPSHLDAPNVSSTARALCDILTRSSPQDIESALS 63

Query: 60  KTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDA 119
            + I   +E   +VL+ SY++P  AVKFFRW+      KH  + WNL+VDLLGKN LF+ 
Sbjct: 64  SSGIVPEEECTNEVLRLSYNYPSSAVKFFRWAGR--GKKHPVHTWNLMVDLLGKNQLFEP 121

Query: 120 MWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSA 179
           MWDA++SMK+E  LSL+TFASVF SY  A R  +A+ +FDVM++YG K DV A+NSLLSA
Sbjct: 122 MWDAVRSMKQEQKLSLSTFASVFQSYCTAARFNEAVMSFDVMDRYGVKQDVVAVNSLLSA 181

Query: 180 IC-RDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDP 238
           IC  D +T    +F   +  ++ PD DT+AILLEGWEKE + A AK TFG+MV  +GW+ 
Sbjct: 182 ICSEDNQTSFGLEFFEGIKAKVPPDGDTFAILLEGWEKEGNAAKAKTTFGDMVAHIGWNK 241

Query: 239 DNVPAYDSYLITLLKGCDGIYE-TVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAE 297
           DNV AYD++L+TLL+   G+ +  V  L+ M +  C PG+ FF  A +  +   +   A 
Sbjct: 242 DNVAAYDAFLMTLLRA--GLMDDVVRFLQVMKDHDCFPGLKFFTTALDFLVKQNDADHAV 299

Query: 298 FIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEF 357
            +W  MV      P+  MYN MI L C +     A +LLDEM ++GAFPD  TYN++FE 
Sbjct: 300 PVWDVMVSG-ELVPNLIMYNAMIGLLCNNAAVDHAFRLLDEMAFHGAFPDSLTYNMIFEC 358

Query: 358 LVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDL 417
           LVK +K  E    F EMVKNE      NC AA+ +  D DDP  A + W Y++EN    L
Sbjct: 359 LVKNKKARETERFFAEMVKNEWPPTGSNCAAAIAMLFDCDDPEAAHEIWSYVVENRVKPL 418

Query: 418 SETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEA--VYEEL 475
            E+ N L+ GLC+M    E  ++A+ + ++ I +    +S LK    K  + A   Y+ L
Sbjct: 419 DESANALLIGLCNMSRFTEVKRFAEDILDRRINIYQSTMSILKDAFYKEGRSARDRYDSL 478

Query: 476 LKKCKAH 482
            ++ KAH
Sbjct: 479 YRRWKAH 485


>gi|115448241|ref|NP_001047900.1| Os02g0711100 [Oryza sativa Japonica Group]
 gi|41052650|dbj|BAD07498.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|41052866|dbj|BAD07780.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113537431|dbj|BAF09814.1| Os02g0711100 [Oryza sativa Japonica Group]
 gi|125540864|gb|EAY87259.1| hypothetical protein OsI_08660 [Oryza sativa Indica Group]
 gi|215687282|dbj|BAG91847.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 489

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 212/463 (45%), Positives = 292/463 (63%), Gaps = 8/463 (1%)

Query: 25  TFASHLDVPNLPPTIKTLCEIIANTPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPA 84
            F ++ D P+LPP I+ LCEI+A++    V+  LD   +RV+   VEQVL+FSY+HP  A
Sbjct: 30  AFPTYRDAPDLPPKIRLLCEILASSAP-DVDAALDDADVRVTSSDVEQVLRFSYAHPRAA 88

Query: 85  VKFFRWSAYQ-LNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFS 143
           V FFRW+ ++ L  +HSPY+WNLVVDLLGKN LF+ MWD + SM+ + +LSLATFASVFS
Sbjct: 89  VAFFRWAGHRHLRHQHSPYSWNLVVDLLGKNRLFEPMWDTVSSMRTQGLLSLATFASVFS 148

Query: 144 SYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV--DGRIK 201
           S + A+     +  F  +  YG   D  ALNSLLSA+CR  +  DA   + V   +   +
Sbjct: 149 S-LAANPASSPLRAFVELPMYGMDRDTPALNSLLSALCRASRLDDARAAIPVARAEAGTR 207

Query: 202 PDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG--CDGIY 259
           PD D+YAILLEG E   D   A++ F EM   +G+DP NVPAYDS+L TL+       + 
Sbjct: 208 PDADSYAILLEGCEAAGDPHVAREVFDEMRHVIGFDPANVPAYDSFLTTLISSGSSTALM 267

Query: 260 ETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMM 319
           + ++ L  +  + C+PG  FF+ A    L  + LRGA  +W   V R G  PD  MY+ M
Sbjct: 268 DAMDYLAILHRQRCSPGEKFFRAALAAHLKARELRGAVVLWNDFVVRRGLIPDKEMYSTM 327

Query: 320 ISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNEN 379
           I L          ++ LDEM ++G FPD  TYN++F+FL+KGRKL EAS +F+EMVKNE 
Sbjct: 328 IMLQGTLGHPEVIVEYLDEMTFDGVFPDADTYNMVFQFLLKGRKLREASAIFSEMVKNEF 387

Query: 380 VLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVK 439
             N  NC  A+R+++D+ D    IK WK M+EN    L E+GN+LV+ L D   LPEA K
Sbjct: 388 WPNEANCSLALRMFLDTRDWDSGIKLWKCMVENGLPPLEESGNMLVSKLKD-ERLPEACK 446

Query: 440 YAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKCKAH 482
           YA+ M ++ I+++   +SKLKQ L+K  K  +++ LL+K KAH
Sbjct: 447 YAEDMIDRCIKLSSSTMSKLKQCLMKVYKGHIHDHLLRKWKAH 489


>gi|357517439|ref|XP_003629008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523030|gb|AET03484.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 543

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 206/471 (43%), Positives = 293/471 (62%), Gaps = 14/471 (2%)

Query: 22  KRSTFASHLDVPNLPPTIKTLCEIIANTPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHP 81
           K + F SHLD PN+  T +TLC ++  T    +++ L  + I  S+E V +VLK SY++P
Sbjct: 37  KPNEFPSHLDTPNVSSTARTLCNLLTRTSPQDIDNALSSSGIHPSEECVHEVLKLSYNYP 96

Query: 82  GPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASV 141
             A+KFFRW+      KHS +AWNL+VDLLG+N LF+ MWDA+++MK+E VLSL TF SV
Sbjct: 97  SSAIKFFRWAGRL--RKHSAHAWNLMVDLLGRNQLFEPMWDAVRTMKQEGVLSLPTFVSV 154

Query: 142 FSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRD-GKTIDAWQFL--RVV-- 196
           F SY +A RV +A+ +FDVM++Y    +V A+NSLLSAICR+  +T    +FL  +V   
Sbjct: 155 FQSYCMAGRVNEAVMSFDVMDKYDIDKNVVAVNSLLSAICREENQTSVGVEFLEKKVTGK 214

Query: 197 -DGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
            +G+I+ D D+YAILLEGWEKE +   AK TFGEMVI VGW  DNV AYD++L+TLL+  
Sbjct: 215 DEGKIELDGDSYAILLEGWEKEGNATKAKTTFGEMVIRVGWSQDNVAAYDAFLMTLLRAL 274

Query: 256 DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHM 315
               E V  LK M +  C PG+ FF  A +  +   +   A  +W  MV   G  P+  M
Sbjct: 275 Q-FDEVVGFLKVMKDHDCFPGLKFFTNALDVLVKRNDAAHAIPLWDVMVVS-GLLPNLIM 332

Query: 316 YNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
           YN MI L C ++E   A +LLDEMV +GAFPD  TYN++FE LVK +K+ E    F EM+
Sbjct: 333 YNAMIGLLCNNDEIDHAFRLLDEMVLHGAFPDSLTYNMIFECLVKNKKVRETERFFAEMI 392

Query: 376 KNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLP 435
           KNE +    NC  A+ +  + DDP  A++ W YM+E     L  + N+++ GLC +  L 
Sbjct: 393 KNEWLPTTSNCAVAIEMLFNCDDPDAALEIWSYMVETRVRVLDVSANMVLIGLCKLKRLS 452

Query: 436 EAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAV----YEELLKKCKAH 482
           E  ++A+ M +K I +    ++KLK+   K  + +     ++ + ++ KAH
Sbjct: 453 EVRRFAEEMLDKRISIYDSTMNKLKEAFYKESRSSSARDKFDAIYRRWKAH 503


>gi|357137261|ref|XP_003570219.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Brachypodium distachyon]
          Length = 488

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 214/463 (46%), Positives = 291/463 (62%), Gaps = 8/463 (1%)

Query: 25  TFASHLDVPNLPPTIKTLCEIIANTPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPA 84
            F ++ D P+LPP I+ LCEI+A +P+  VE  LD   +RV+   VEQVL+FSY+HP  A
Sbjct: 29  VFPTYKDAPDLPPKIRLLCEILA-SPATDVEAALDDAAVRVTTSDVEQVLRFSYAHPRGA 87

Query: 85  VKFFRWSAYQ-LNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFS 143
             FFRW+ ++ L  +HSPY+WNLV+DLLGKN LFD MWD + SM+ + +LSLA+FASVFS
Sbjct: 88  AAFFRWAGHRHLRHQHSPYSWNLVIDLLGKNRLFDPMWDTVSSMRSQGLLSLASFASVFS 147

Query: 144 SYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV--DGRIK 201
           S + AD V   +  F  M +YG   D  ALNSLLSA+CR  +  DA   + V   +   +
Sbjct: 148 S-LAADPVSSPLKAFVDMPKYGMDRDTPALNSLLSALCRASRLDDARAAIPVARAEASTR 206

Query: 202 PDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD--GIY 259
           PD D+YAILLEG E   D A A++ F EMV  VG+DP NVPAYDS+L TL+       + 
Sbjct: 207 PDADSYAILLEGCEAAGDPAVAREVFDEMVRHVGFDPANVPAYDSFLTTLVSSSSTTALT 266

Query: 260 ETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMM 319
           E ++ L  +    C+PG  F + A    L  Q+LRGA+ +W   V R+G  PD  MY+ M
Sbjct: 267 EAMDYLAVLRRYRCSPGEKFLRAALAAHLKAQDLRGAQVLWDDFVVRLGLIPDKEMYSSM 326

Query: 320 ISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNEN 379
           I L          ++ +D+M + G FPD  TYN++ + L+KGRKL EAS +F EMVKNE 
Sbjct: 327 IMLQGTLGHAEVIVEYVDDMAFYGVFPDADTYNMVLKLLLKGRKLREASAIFREMVKNEC 386

Query: 380 VLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVK 439
             N  NC  A+R+++D+ D    IK W  M+ N    L E+GN+LV+ L D  MLPEA K
Sbjct: 387 WPNEANCSLALRMFLDTRDWETGIKVWNCMVANGLPPLEESGNMLVSKLKD-EMLPEACK 445

Query: 440 YAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKCKAH 482
           YA+ M ++GI+V+   L KL+  L+K +K A+++ LL K KA 
Sbjct: 446 YAEDMIDQGIKVSSSTLGKLRLCLVKVKKGAIHDRLLTKWKAR 488


>gi|224070746|ref|XP_002303222.1| predicted protein [Populus trichocarpa]
 gi|222840654|gb|EEE78201.1| predicted protein [Populus trichocarpa]
          Length = 472

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 193/469 (41%), Positives = 287/469 (61%), Gaps = 7/469 (1%)

Query: 16  DPHNKRKRSTFASHLDVPNLPPTIKTLCEIIANTPSPTVEDVLDKTLIRVSQETVEQVLK 75
           + + K  +  F S  D  ++ P+ + L EII    S  +E  L  T I  + + V +VLK
Sbjct: 7   NTNRKTSKPQFESSFDSQDISPSARLLFEIITRPSSHDIESALSSTGIPPTHDIVHEVLK 66

Query: 76  FSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSL 135
             + +   A+ FFRW+      K + YAWNL+VDLLGKN +++ MWDA+++MK+E++LS+
Sbjct: 67  LCHENATSAIAFFRWAGR--THKLTSYAWNLMVDLLGKNWMYEPMWDAVRTMKQEDMLSM 124

Query: 136 ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRD-GKTIDAWQFLR 194
           ATF SVF SY +A +  +AI +F VM++YG + DV  +NSLL+AIC +  +T  A +F  
Sbjct: 125 ATFVSVFGSYCMAGKFNEAIMSFYVMDKYGVQQDVVVVNSLLTAICHEENQTAKALEFFD 184

Query: 195 VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG 254
            +  +I P+ DT+AILLEGWEKE DVA AK TFGEMVI+VGW P+N+ AYDS+L TL++G
Sbjct: 185 KIKLKIPPNADTFAILLEGWEKEGDVAKAKTTFGEMVIKVGWSPENMSAYDSFLTTLVRG 244

Query: 255 CDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTH 314
                E V  L+ M  + C PG+ FF  A +  +   +   A  +W  MVG  G  P+  
Sbjct: 245 SQA-DEAVKFLRVMKGKNCLPGLKFFSNALDMLVKQNDSTHAIPLWDIMVGS-GLLPNLI 302

Query: 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
           MYN MI L+C +N+   A +LLDEMV+NGAFPD  T+NI+F  L+K +K+      F EM
Sbjct: 303 MYNAMIGLHCNNNDVDNAFRLLDEMVFNGAFPDFLTFNIIFRCLIKNKKVHRVGKFFYEM 362

Query: 375 VKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHML 434
           +KNE+   H +C AA+   +D  DP +AI+ W Y++ENH   L  + N L+ G C++  +
Sbjct: 363 IKNESPPTHFDCSAAIMTLIDGGDPEMAIEIWNYIVENHVLPLDGSANALLIGFCNLGRM 422

Query: 435 PEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEA--VYEELLKKCKA 481
            +  ++A+ M ++ I +    + KLK    K  +     Y+ L+++ KA
Sbjct: 423 SQVRRFAEDMLDRRINIYESTMKKLKDSFDKTGRHGRDKYDCLIRRWKA 471


>gi|326494526|dbj|BAJ94382.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 488

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 215/491 (43%), Positives = 290/491 (59%), Gaps = 12/491 (2%)

Query: 1   MARNDKRRHHDDPSPDPHNKRKRS----TFASHLDVPNLPPTIKTLCEIIANTPSPTVED 56
           M+   ++R  D     P  KR R      F ++ D P+L P I+ LCEI+A++ S  VE 
Sbjct: 1   MSDRREKRPSDAADAAPEAKRAREPAAPAFPTYKDAPDLAPKIRLLCEILASSAS-DVEA 59

Query: 57  VLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQ-LNDKHSPYAWNLVVDLLGKNC 115
            LD   +RV+   VEQVL+FSY+HP  A  FFRW+ ++ L+ +HSPY+WNLV+DLLGKN 
Sbjct: 60  ALDDADVRVTTSDVEQVLRFSYAHPRGAAAFFRWAGHRHLHHQHSPYSWNLVIDLLGKNR 119

Query: 116 LFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNS 175
           LFD MWD + SM+ + +LSLATFAS+FSS + A+     +  F  M +YG   D  ALNS
Sbjct: 120 LFDPMWDTVGSMRAQGLLSLATFASIFSS-LAANPTSSPLKAFVEMPRYGMDRDTPALNS 178

Query: 176 LLSAICRDGKTIDAWQFLRVV--DGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIE 233
           LLSA+CR  +  DA   + V   +   +PD D+YAILLEG E   + A A++ F EMV  
Sbjct: 179 LLSALCRASRLDDARAAIPVARAEAGTRPDADSYAILLEGCEAAGNAAVAREVFDEMVHA 238

Query: 234 VGWDPDNVPAYDSYLITLLKG--CDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQ 291
           + +DP NVPAYDS+L TL+       + + +  L  +    C+PG  F + A    L  +
Sbjct: 239 LDFDPANVPAYDSFLTTLVSSGSSTALSDAMEYLAVLRRYRCSPGEKFLRAALAAYLEAR 298

Query: 292 NLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTY 351
            LR A  +W   V R G  PD  MY  MI L          +K LDEM   G FPD  TY
Sbjct: 299 ELRSAVVLWDEFVLRRGLVPDKEMYTTMIMLQGTLGHAEVTVKYLDEMAIYGVFPDADTY 358

Query: 352 NILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIE 411
           N++ + L+KGRKL EAS +F EMVKNE   N  NC  A+ +++D+ D    IK WK M  
Sbjct: 359 NVVLKLLLKGRKLREASAIFKEMVKNECWPNEANCSLALGMFLDTRDWDTGIKVWKCMAA 418

Query: 412 NHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAV 471
           N    L E GN+LV+ L D  MLPEA KYA+ M ++GI+++   L+KLK  L K +K A+
Sbjct: 419 NSLPPLEEGGNMLVSKLKD-EMLPEACKYAEDMIDQGIKLSSSTLTKLKHSLGKVKKGAI 477

Query: 472 YEELLKKCKAH 482
           ++ L  K KAH
Sbjct: 478 HDRLFAKWKAH 488


>gi|413938524|gb|AFW73075.1| hypothetical protein ZEAMMB73_887223 [Zea mays]
          Length = 492

 Score =  365 bits (937), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 213/483 (44%), Positives = 289/483 (59%), Gaps = 19/483 (3%)

Query: 7   RRHHDDPSPD-PHNKRKRSTFASHLDVPNLPPTIKTLCEIIAN-TPSPTVEDVLDKTLIR 64
           +R  D P+P  P NK          + P++ P  +  C+I+A+      +   LDK  IR
Sbjct: 22  KRARDPPAPALPTNK----------EAPDMAPKTRIFCDILASRADDEELNAELDKADIR 71

Query: 65  VSQETVEQVLKFSYSHPGPAVKFFRWSAYQ-LNDKHSPYAWNLVVDLLGKNCLFDAMWDA 123
           VS   VEQVL+FSY+HP  A  FFRW+ Y+ L  +HSPY+WNL+VD+LGKN LF+ MWD 
Sbjct: 72  VSIADVEQVLRFSYAHPRAAAAFFRWAGYRYLGHEHSPYSWNLLVDILGKNRLFEPMWDT 131

Query: 124 IKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRD 183
           +KSM+ + +LSLATFAS+FSS + A      +  F  M +YG   D  ALNSLLSA+CR 
Sbjct: 132 VKSMQSQQLLSLATFASIFSS-LAATPGGSPLKAFMDMPRYGMTRDTPALNSLLSALCRA 190

Query: 184 GKTIDAWQFLRVV--DGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNV 241
            +  DA   + V   +   +PD D+YAILLEG E   D+  A++ F EMV  +G+ PDNV
Sbjct: 191 NRLDDARAAIPVARAEAGTRPDADSYAILLEGSEAAADLRVAREVFDEMVQAIGFYPDNV 250

Query: 242 PAYDSYLITLLKG--CDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFI 299
           PAYDS+L TL+       + E +  L  +   GC+PG  FF+ A    L  + LRGA  +
Sbjct: 251 PAYDSFLTTLVSSDSSTALPEAMEYLNVLSRHGCSPGEKFFRAALAAHLDARQLRGAMNL 310

Query: 300 WGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLV 359
           W   VGR G  PD  MYN MI L          +  LD+M+ NG FPD  TYN++ + L+
Sbjct: 311 WDDFVGRRGLVPDMEMYNTMIKLQGSLGHAELIVGYLDDMISNGVFPDTNTYNVVLQLLL 370

Query: 360 KGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSE 419
           KG+K  EA+ +F+EMVKNE   N  NC  A+R+++D+      IK W  M+EN    L E
Sbjct: 371 KGKKHREAAAIFSEMVKNECWPNEGNCSLALRMFLDTHYWETGIKVWCCMVENGLPPLQE 430

Query: 420 TGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKC 479
            GN+LVA L D   LPEA KYA+ M ++GI+++   LSKLKQ L + +K  +++ LL K 
Sbjct: 431 CGNMLVAKLKD-DRLPEACKYAEDMIDRGIKLSSATLSKLKQRLQRIKKGEIHDHLLAKW 489

Query: 480 KAH 482
           KAH
Sbjct: 490 KAH 492


>gi|226498918|ref|NP_001144625.1| uncharacterized protein LOC100277643 [Zea mays]
 gi|195644788|gb|ACG41862.1| hypothetical protein [Zea mays]
          Length = 492

 Score =  365 bits (936), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 213/483 (44%), Positives = 289/483 (59%), Gaps = 19/483 (3%)

Query: 7   RRHHDDPSPD-PHNKRKRSTFASHLDVPNLPPTIKTLCEIIAN-TPSPTVEDVLDKTLIR 64
           +R  D P+P  P NK          + P++ P  +  C+I+A+      +   LDK  IR
Sbjct: 22  KRARDPPAPALPTNK----------EAPDMAPKTRIFCDILASRADDEELNAELDKADIR 71

Query: 65  VSQETVEQVLKFSYSHPGPAVKFFRWSAYQ-LNDKHSPYAWNLVVDLLGKNCLFDAMWDA 123
           VS   VEQVL+FSY+HP  A  FFRW+ Y+ L  +HSPY+WNL+VD+LGKN LF+ MWD 
Sbjct: 72  VSIADVEQVLRFSYAHPRAAAAFFRWAGYRYLGHEHSPYSWNLLVDILGKNRLFEPMWDT 131

Query: 124 IKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRD 183
           +KSM+ + +LSLATFAS+FSS + A      +  F  M +YG   D  ALNSLLSA+CR 
Sbjct: 132 VKSMQSQQLLSLATFASIFSS-LAATPGGSPLKAFMDMPRYGMTRDTPALNSLLSALCRA 190

Query: 184 GKTIDAWQFLRVV--DGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNV 241
            +  DA   + V   +   +PD D+YAILLEG E   D+  A++ F EMV  +G+ PDNV
Sbjct: 191 NRLDDARAAIPVARAEAGTRPDADSYAILLEGSEAAADLRVAREVFDEMVQAIGFYPDNV 250

Query: 242 PAYDSYLITLLKG--CDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFI 299
           PAYDS+L TL+       + E +  L  +   GC+PG  FF+ A    L  + LRGA  +
Sbjct: 251 PAYDSFLTTLVSSDSSTALPEAMEYLNVLSRHGCSPGEKFFRAALAAHLEARQLRGAMNL 310

Query: 300 WGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLV 359
           W   VGR G  PD  MYN MI L          +  LD+M+ NG FPD  TYN++ + L+
Sbjct: 311 WDDFVGRRGLVPDMEMYNTMIKLQGSLGHAELIVGYLDDMISNGVFPDTNTYNVVLQLLL 370

Query: 360 KGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSE 419
           KG+K  EA+ +F+EMVKNE   N  NC  A+R+++D+      IK W  M+EN    L E
Sbjct: 371 KGKKHREAAAIFSEMVKNECWPNEGNCSLALRMFLDTHYWETGIKVWCCMVENGLPPLQE 430

Query: 420 TGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKC 479
            GN+LVA L D   LPEA KYA+ M ++GI+++   LSKLKQ L + +K  +++ LL K 
Sbjct: 431 CGNMLVAKLKD-DRLPEACKYAEDMIDRGIKLSSATLSKLKQRLQRIKKGEIHDHLLAKW 489

Query: 480 KAH 482
           KAH
Sbjct: 490 KAH 492


>gi|449519571|ref|XP_004166808.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Cucumis sativus]
          Length = 503

 Score =  362 bits (930), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 193/480 (40%), Positives = 288/480 (60%), Gaps = 10/480 (2%)

Query: 5   DKRRHHDDPSPDPHNKRKRSTFASHLDVPNLPPTIKTLCEIIANTPSPTVEDVLDKTLIR 64
           D+R+     SP   N  +   F  HLD+P++ P  KT+CE++       V+  L  T + 
Sbjct: 27  DRRQGLKTSSPRSRNSPR---FPLHLDLPDISPAAKTICEVLVRVSRNEVDGALLATGLA 83

Query: 65  VSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAI 124
            S E V++VL+ SY+ P  A+KFFRW A QL  K S Y+WNL++DLLGKN LF+ MW+ I
Sbjct: 84  PSPELVQEVLRVSYNSPSSAIKFFRW-ARQLA-KQSAYSWNLMIDLLGKNELFEEMWNGI 141

Query: 125 KSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAIC-RD 183
           ++M++E +LSL TF SVF SY  A R K+A  TF+VM++Y  + DV A+NSLLSAIC  +
Sbjct: 142 RTMRQEKILSLPTFVSVFGSYCSAGRSKEARMTFEVMDRYEVEKDVVAVNSLLSAICSEE 201

Query: 184 GKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPA 243
            +T +AW+F      +I  D +++AILLEGWEKE +V  AK TF EMV  VGW+P+NV +
Sbjct: 202 NQTSEAWEFFEKHKEKIPLDGESFAILLEGWEKEGNVEKAKVTFDEMVKRVGWNPENVSS 261

Query: 244 YDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAM 303
           YD++LITL++G     + +  L ++ +  C PG+ F   A +  +   +   A  +W  +
Sbjct: 262 YDAFLITLVRGGRS-EDAIKVLLKLKKNRCLPGLKFLSNALDSLIQQNDANHAILLWDIV 320

Query: 304 VGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRK 363
           VG  G  P+  +YN +I L   +++   + +LLD MV++GAFP+  TYN++F  L+K +K
Sbjct: 321 VGS-GLVPNLIVYNAIIGLLSENSKIDDSFRLLDSMVFHGAFPNSLTYNLIFSSLIKNKK 379

Query: 364 LWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNL 423
           + E S  F EMVKNE      +C AA+ +  D  DP  AI  W YM ENH   +  + N 
Sbjct: 380 VKEVSQFFREMVKNECPPTPSSCAAAITMLFDGYDPETAIDIWNYMDENHIEPMDTSANA 439

Query: 424 LVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARK--EAVYEELLKKCKA 481
           L+ GLC+++ L E  ++A  M ++ I +    +  LK    + R      Y+ LL++ +A
Sbjct: 440 LLIGLCNLNRLTEVRRFADDMIDQRIDILESTMKLLKNCFYQQRGNFRENYDGLLRRWRA 499


>gi|148906806|gb|ABR16549.1| unknown [Picea sitchensis]
          Length = 524

 Score =  361 bits (927), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 197/473 (41%), Positives = 280/473 (59%), Gaps = 11/473 (2%)

Query: 14  SPDPHNKRKRSTFASHLDVPNLPPTIKT---LCEIIANTPSPTVEDVLDKTLIRVSQETV 70
           SP P    K       LD    PPT+     +  I+   P   VE+ L++  + VS + V
Sbjct: 52  SPQPAQVLKEP----GLDPSQYPPTMPIEMIVSNILKKPPRMGVENALNELGLEVSIQFV 107

Query: 71  EQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKE 130
           E VLK SY     A+KFFRWS  +L+ KHSP AWNL+VDLLGK  LFDAMWD IK MK +
Sbjct: 108 EDVLKLSYGAGMEAMKFFRWSGLKLSRKHSPLAWNLLVDLLGKEKLFDAMWDCIKVMKNQ 167

Query: 131 NVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAW 190
            ++S+ T +SVF +YV A +V +A  TFDV+EQYGC  DV ALN  LSA CR  ++ +A 
Sbjct: 168 GIVSMETMSSVFGNYVQAGKVAEARMTFDVIEQYGCPQDVVALNCFLSAFCRYKQSKEAL 227

Query: 191 QFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLIT 250
           +F   V  +I PD DTYA+LLEG E E +V+ A+ TFGEM+I  GW P+N  AY+++L T
Sbjct: 228 EFFDKVKEKIAPDADTYALLLEGLEIEGNVSKARTTFGEMIIRHGWLPNNTSAYNAFLST 287

Query: 251 LLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFR 310
           L+ G   + E +  L  M  R C P + FF+   +     ++ + A  +W  M  + G  
Sbjct: 288 LVNGSQ-VEEALKFLAVMKTRKCLPDLGFFRNTLQILYQRKDTKNAYGLWELM-KQSGIL 345

Query: 311 PDTHMYNMMISLYCYSN--ETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEAS 368
            D   YN MI ++C +N  +   A +LLDEMV+ G FPD +TYN +FE L+  RK+ EAS
Sbjct: 346 LDLPSYNTMIGVFCSANPIQVDFAYRLLDEMVFTGIFPDFKTYNTIFEALITARKVEEAS 405

Query: 369 GLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGL 428
            +F EM KN+    + N   A+++Y ++DDP +A+  WK+MI+      S+   +L+ G 
Sbjct: 406 SIFREMTKNDFCPLYANYVMAIKMYFEADDPEMAVMMWKHMIQKAIFPKSDCAAILIDGF 465

Query: 429 CDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKCKA 481
           CD+    EA+KY+     +G+Q+    ++KLK    +A K+  Y +L KK K+
Sbjct: 466 CDLGRASEALKYSLEAITRGVQIPVETMTKLKNASRQAGKQDAYGQLEKKMKS 518


>gi|449466215|ref|XP_004150822.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Cucumis sativus]
          Length = 487

 Score =  358 bits (918), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 188/459 (40%), Positives = 280/459 (61%), Gaps = 7/459 (1%)

Query: 26  FASHLDVPNLPPTIKTLCEIIANTPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAV 85
           F  HLD+P++ P  KT+CE++       V+  L  T +  S E V++VL+ SY+ P  A+
Sbjct: 29  FPLHLDLPDISPAAKTICEVLVRVSRNEVDGALLATGLAPSPELVQEVLRVSYNSPSSAI 88

Query: 86  KFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSY 145
           KFFRW A QL  K S Y+WNL++DLLGKN LF+ MW+ I++M++E +LSL TF SVF SY
Sbjct: 89  KFFRW-ARQL-AKQSAYSWNLMIDLLGKNELFEEMWNGIRTMRQEKILSLPTFVSVFGSY 146

Query: 146 VVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAIC-RDGKTIDAWQFLRVVDGRIKPDN 204
             A R K+A  TF+VM++Y  + DV A+NSLLSAIC  + +T +AW+F      +I  D 
Sbjct: 147 CSAGRSKEARMTFEVMDRYEVEKDVVAVNSLLSAICSEENQTSEAWEFFEKHKEKIPLDG 206

Query: 205 DTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNS 264
           +++AILLEGWEKE +V  AK TF EMV  VGW+P+NV +YD++LITL++G     + +  
Sbjct: 207 ESFAILLEGWEKEGNVEKAKVTFDEMVKRVGWNPENVSSYDAFLITLVRGGRS-EDAIKV 265

Query: 265 LKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYC 324
           L ++ +  C PG+ F   A +  +   +   A  +W  +VG  G  P+  +YN +I L  
Sbjct: 266 LLKLKKNRCLPGLKFLSNALDSLIQQNDANHAILLWDIVVGS-GLVPNLIVYNAIIGLLS 324

Query: 325 YSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHE 384
            +++   + +LLD MV++GAFP+  TYN++F  L+K +K+ E S  F EMVKNE      
Sbjct: 325 ENSKIDDSFRLLDSMVFHGAFPNSLTYNLIFSSLIKNKKVKEVSQFFREMVKNECPPTPS 384

Query: 385 NCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGM 444
           +C AA+ +  D  DP  AI  W YM ENH   +  + N L+ GLC+++ L E  ++A  M
Sbjct: 385 SCAAAITMLFDGYDPETAIDIWNYMDENHIEPMDTSANALLIGLCNLNRLTEVRRFADDM 444

Query: 445 AEKGIQVTPFALSKLKQILIKARK--EAVYEELLKKCKA 481
            ++ I +    +  LK    + R      Y+ LL++ +A
Sbjct: 445 IDQRIDILESTMKLLKNCFYQQRGNFRENYDGLLRRWRA 483


>gi|359474755|ref|XP_002269803.2| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Vitis vinifera]
 gi|296085476|emb|CBI29208.3| unnamed protein product [Vitis vinifera]
          Length = 464

 Score =  356 bits (914), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 188/437 (43%), Positives = 266/437 (60%), Gaps = 5/437 (1%)

Query: 35  LPPTIKTLCEIIANTPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQ 94
           + P  KTL +II+ T    +   L  T I  + + V+ VL+ SYS+   AV+FFRW+   
Sbjct: 13  ISPDAKTLLQIISATAPHALVAALSATSIPPTPDVVQDVLRLSYSNSSAAVEFFRWAG-- 70

Query: 95  LNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDA 154
           L  KHS ++WNL+VDLLGKN  F+ MWDAI+SM+ E  LSL+ F SVF SY    RV +A
Sbjct: 71  LTRKHSAHSWNLIVDLLGKNSKFEPMWDAIRSMRNEGALSLSAFISVFGSYCSVGRVNEA 130

Query: 155 ITTFDVMEQYGCKHDVFALNSLLSAIC-RDGKTIDAWQFLRVVDGRIKPDNDTYAILLEG 213
           I +F+VM++YG   DV A+N+LLSAIC   G T  A +F   +  +I PD DT+ ILLEG
Sbjct: 131 IMSFEVMDRYGIPPDVAAMNALLSAICCEGGSTTLALEFFEKIKVKITPDGDTFMILLEG 190

Query: 214 WEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGC 273
           WE+E +V  AK TFGEMV+ +GW P N+ AY+S L+TL++G + + E +  L  M  +GC
Sbjct: 191 WEREGNVTKAKSTFGEMVVRLGWSPQNMVAYNSVLMTLVRGME-VEEAIKFLLVMKGKGC 249

Query: 274 NPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAM 333
            PG+ FF  A +  L   +   A  +W  M+   GF P+  MYN +I + C + +   A 
Sbjct: 250 LPGLKFFSNALDVLLKQNDSTHAIALWDIMLDG-GFMPNLMMYNTIIGILCNAGDADNAF 308

Query: 334 KLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVY 393
           + LDEMV+ G F D  TYN++F+ LVK +K+ EA   F EM+KNE      NC AA+ + 
Sbjct: 309 RFLDEMVFYGVFADSFTYNMIFQCLVKHKKVHEAGKFFIEMIKNECPPMPSNCAAAIAMC 368

Query: 394 MDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTP 453
            D DDP +AI+ W YMIEN  S + E+ N L+ GLC++    +  ++A+ M +  I++  
Sbjct: 369 FDGDDPEMAIEIWSYMIENSLSPVDESANALLIGLCNLRRFSDYRRFAEDMLDMKIKIHE 428

Query: 454 FALSKLKQILIKARKEA 470
             + KLK    K  + A
Sbjct: 429 STMEKLKNARYKDGRSA 445


>gi|116790303|gb|ABK25569.1| unknown [Picea sitchensis]
          Length = 541

 Score =  353 bits (907), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 195/472 (41%), Positives = 278/472 (58%), Gaps = 8/472 (1%)

Query: 15  PDPHNKRKRSTFASHLDVPNLPPTIKT---LCEIIANTPSPTVEDVLDKTLIRVSQETVE 71
           P   ++R R      LD    PPT+     +  I+   P   VE+ L++  + VS + VE
Sbjct: 70  PVQSSQRPRVPKEPGLDRSQYPPTMPIEMIVSNILKKPPRMGVENALNELRLGVSIQFVE 129

Query: 72  QVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKEN 131
            VLK SY     AVKFFRW+  +L  KHSP AWNL+VDLLGK  LFDAMWD IK MK E 
Sbjct: 130 DVLKLSYGAGMEAVKFFRWAGLKLTRKHSPLAWNLLVDLLGKEKLFDAMWDCIKVMKNEG 189

Query: 132 VLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ 191
            + +  F+SVF +YV A ++ +A  TF+VMEQYGC+HDV ALN  +SA+CR  +   A +
Sbjct: 190 TVPMEIFSSVFGNYVQAGKLDEAKMTFEVMEQYGCRHDVVALNCYISALCRYKQAKAALE 249

Query: 192 FLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITL 251
           F   V  RI PD DTYA++LEGWE E +V+ AK TFGEM++ +GW P+N  AY+++L TL
Sbjct: 250 FFDRVKARIAPDADTYALMLEGWEIEGNVSMAKTTFGEMIVHLGWVPNNTSAYNAFLSTL 309

Query: 252 LKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRP 311
           + G   + E +  L  M    C P + FF+   +     ++ + A  +W  M  + G  P
Sbjct: 310 VNGFQ-VEEALKFLVMMKSLKCLPDLGFFRNTLQLLYQRKDTKNAYGLWELM-RQSGIVP 367

Query: 312 DTHMYNMMISLYCYSN--ETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASG 369
           D   YN MI + C  N  +   A +LL EMV NGAFPD ++YN +FE L+  RK+ EAS 
Sbjct: 368 DLPTYNTMIGVCCSVNPIQVDFADRLLVEMVCNGAFPDFRSYNTIFEALIIARKVEEASS 427

Query: 370 LFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLC 429
           +F EM KNE    + N   A+++Y + +DP +A+  WK+MI+      S+    L+ G C
Sbjct: 428 IFREMTKNEFCPLYANYVRAIKMYFEVEDPDMAVIMWKHMIQKAIFPKSDCAATLIDGFC 487

Query: 430 DMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKCKA 481
           D+  + EA+KY+     +G+++    ++KLK    +A K+  Y +L KK K+
Sbjct: 488 DLGRVSEALKYSLETINRGVEIPVETMTKLKNAR-QAGKQDAYGQLEKKMKS 538


>gi|147859123|emb|CAN82548.1| hypothetical protein VITISV_005814 [Vitis vinifera]
          Length = 493

 Score =  348 bits (892), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 188/437 (43%), Positives = 266/437 (60%), Gaps = 5/437 (1%)

Query: 35  LPPTIKTLCEIIANTPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQ 94
           + P  KTL +II+ T    +   L  T I  + + V+ VL+ SYS+   AV+FFRW+   
Sbjct: 13  ISPDAKTLLQIISATAPHALXAALSATXIPPTPDVVQDVLRLSYSNXSAAVEFFRWAG-- 70

Query: 95  LNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDA 154
           L  KHS ++WNL+VDLLGKN  F+ MWDAI+SM+ E  LSL+ F SVF SY    RV +A
Sbjct: 71  LTRKHSAHSWNLIVDLLGKNSKFEPMWDAIRSMRNEGALSLSAFISVFGSYCSVGRVNEA 130

Query: 155 ITTFDVMEQYGCKHDVFALNSLLSAIC-RDGKTIDAWQFLRVVDGRIKPDNDTYAILLEG 213
           I +F+VM++YG   DV A+N+LLSAIC   G T  A +F   +  +I PD DT+ ILLEG
Sbjct: 131 IMSFEVMDRYGIPPDVAAMNALLSAICCEGGSTTLALEFFEKIKVKITPDGDTFMILLEG 190

Query: 214 WEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGC 273
           WE+E +V  AK TFGEMV+ +GW P N+ AY+S L+TL++G + + E +  L  M  +GC
Sbjct: 191 WEREGNVTKAKSTFGEMVVRLGWSPQNMVAYNSVLMTLVRGME-VEEAIKFLLVMKGKGC 249

Query: 274 NPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAM 333
            PG+ FF  A +  L   +   A  +W  M+   GF P+  MYN +I + C + +   A 
Sbjct: 250 LPGLKFFSNALDVLLKQNDSTHAIALWDIMLDG-GFMPNLMMYNTIIGILCNAGDADNAF 308

Query: 334 KLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVY 393
           + LDEMV+ G F D  TYN++F+ LVK +K+ EA   F EM+KNE      NC AA+ + 
Sbjct: 309 RFLDEMVFYGVFADSFTYNMIFQCLVKHKKVHEAGKFFIEMIKNECPPMPSNCAAAIAMC 368

Query: 394 MDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTP 453
            D DDP +AI+ W YMIEN  S + E+ N L+ GLC++    +  ++A+ M +  I++  
Sbjct: 369 FDGDDPEMAIEIWSYMIENSLSPVDESANALLIGLCNLRRFSDYRRFAEDMLDMKIKIHE 428

Query: 454 FALSKLKQILIKARKEA 470
             + KLK    K  + A
Sbjct: 429 STMEKLKNARYKDGRSA 445


>gi|116787233|gb|ABK24422.1| unknown [Picea sitchensis]
          Length = 504

 Score =  343 bits (880), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 185/462 (40%), Positives = 269/462 (58%), Gaps = 11/462 (2%)

Query: 30  LDVPNLPPTIKT---LCEIIANTPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVK 86
           LD    PPT      +  I+   P   +E+ L+   + VS + VE VLK SY     A+K
Sbjct: 38  LDPSQYPPTTPIEVIVSNILKKPPQMGIENTLNGLGLGVSIKFVEDVLKLSYGAGMEAMK 97

Query: 87  FFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYV 146
           FFRW+  +L+ KHSP AWNL+VDLLG + LFDAMWD IK MK + ++S  T +SVF +YV
Sbjct: 98  FFRWAGLKLSSKHSPLAWNLLVDLLGSDKLFDAMWDCIKIMKNQGIVSTETLSSVFGNYV 157

Query: 147 VADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDT 206
            A +V +A  TF+VMEQYGC+ DV ALN  +SA+CR  +   A +F   V  RI PD DT
Sbjct: 158 QAGKVDEARMTFEVMEQYGCRQDVVALNCYISALCRYKQVKAALEFFDSVKERIAPDADT 217

Query: 207 YAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLK 266
           YA+LLEGWE E +V+NA+ TFGEM+  +GW P+N  AY+++L TL+ G   + E +  L 
Sbjct: 218 YALLLEGWEIEGNVSNARSTFGEMIARLGWMPNNTSAYNAFLSTLVNGFQ-VDEALKYLG 276

Query: 267 RMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAM-----VGRIGFRPDTHMYNMMIS 321
            M  + C P + FF+   +     + ++    +W  M     + + G  PD   YN MI 
Sbjct: 277 VMKTKKCLPDLGFFRNTLQILYQRKAMKEPYGLWQLMSLWEFMRQSGIVPDLPTYNTMIG 336

Query: 322 LYCYSN--ETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNEN 379
           + C +N  +  +A  LLDEM   GAFPD +TYN +FE  +  RK+ EAS +F EM KNE 
Sbjct: 337 VCCSANPIQVNSAYSLLDEMALTGAFPDSKTYNTIFEAFITARKVEEASSIFREMTKNEF 396

Query: 380 VLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVK 439
              + N   A+++Y ++DD  +A+  W++MI+      S+   +L+ G  D+  +  A+K
Sbjct: 397 CPLYANYVMAIKMYFEADDSEMAVMMWRHMIQKAIFPKSDCAAILIDGFLDLGRVSAALK 456

Query: 440 YAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKCKA 481
           Y+     +G+Q+    + KLK   I+  K+  Y +L  K K+
Sbjct: 457 YSLEAITRGVQIPVETMIKLKNASIQTGKQDAYGQLEIKMKS 498


>gi|226494576|ref|NP_001143685.1| uncharacterized protein LOC100276413 [Zea mays]
 gi|195624570|gb|ACG34115.1| hypothetical protein [Zea mays]
          Length = 467

 Score =  341 bits (875), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 183/446 (41%), Positives = 255/446 (57%), Gaps = 11/446 (2%)

Query: 44  EIIANTPSPTVEDVLDKTLIRVSQETVEQVLKFS--YSHPGPAVKFFRWSAYQLNDKHSP 101
           EII   P+  VE  L    I  + E  E VLK    Y  P  AV+FFRW+   ++  H+ 
Sbjct: 26  EIICRVPAGEVEAALSACGIGPTAEVEELVLKSRECYKRPKSAVRFFRWAGQSVS--HTA 83

Query: 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKEN---VLSLATFASVFSSYVVADRVKDAITTF 158
           YAWNL+VD+LGK  +F+ MWDAI+SMK+E    ++S+ATFASVF+SY  A  +KDAI   
Sbjct: 84  YAWNLLVDILGKAAMFEPMWDAIRSMKQEGGGGLVSVATFASVFASYCAAGNIKDAIAAL 143

Query: 159 DVMEQYGCKHDVFALNSLLSAICR-DGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKE 217
           DVM++YG KHD  ALNSLLSAICR +G+  DA          I PD DT+AILLE WEKE
Sbjct: 144 DVMDRYGLKHDAVALNSLLSAICRVEGRAQDAQDVFERTKATIPPDGDTFAILLEAWEKE 203

Query: 218 RDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIY-ETVNSLKRMMERGCNPG 276
            +   AK  FGEMV+ +GWD  NV AYDS+L TL++G  G+  E    L+ M  +GC PG
Sbjct: 204 GNAVRAKSVFGEMVVRIGWDAANVSAYDSFLSTLVRG--GLLDEAFKFLQVMRSKGCLPG 261

Query: 277 MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLL 336
           + FF  A +  +   +   A  IW  MV   G  P+  MY+ MI L+C +     A+ LL
Sbjct: 262 INFFSTAVDLVVRKGDYLNAVAIWHMMVSEAGLVPNFSMYSAMIGLHCNAGSIDDALGLL 321

Query: 337 DEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDS 396
           DEM  NG F +  TYN + E  +K RK  EA     EM KNE +    NC AA+ ++   
Sbjct: 322 DEMPLNGVFANSVTYNTILEGFIKHRKAREAESFLTEMSKNEQLPTASNCAAAISLFFKE 381

Query: 397 DDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFAL 456
            +P  AI  W+ ++E++ +   ++   L+AGL D     E  K A  M +  ++++   +
Sbjct: 382 FNPSAAIDVWRCIVEHNITPAEDSAKELIAGLLDFGRFTEVTKRADEMIDMRVELSRSTM 441

Query: 457 SKLKQILIKARKEAVYEELLKKCKAH 482
             +K+   KA +   Y+ + ++ K +
Sbjct: 442 ENMKRAFAKAGRHQSYDNIARRLKRY 467


>gi|223950475|gb|ACN29321.1| unknown [Zea mays]
 gi|414586333|tpg|DAA36904.1| TPA: hypothetical protein ZEAMMB73_204717 [Zea mays]
          Length = 468

 Score =  338 bits (868), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 182/446 (40%), Positives = 255/446 (57%), Gaps = 11/446 (2%)

Query: 44  EIIANTPSPTVEDVLDKTLIRVSQETVEQVLKFS--YSHPGPAVKFFRWSAYQLNDKHSP 101
           EII   P+  VE  L    I  + E  E VLK    Y  P  AV+FFRW+   ++  H+ 
Sbjct: 27  EIICRVPAGEVEAALSACGIGPTAEVEELVLKSRECYKRPKSAVRFFRWAGQSVS--HTA 84

Query: 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKEN---VLSLATFASVFSSYVVADRVKDAITTF 158
           YAWNL+VD+LGK  +F+ MWDAI+SMK+E    ++S+ATFASVF+SY  A  +KDAI   
Sbjct: 85  YAWNLLVDILGKAAMFEPMWDAIRSMKQEGGGGLVSVATFASVFASYCAAGNIKDAIAAL 144

Query: 159 DVMEQYGCKHDVFALNSLLSAICR-DGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKE 217
           DVM++YG KHD  ALNSLLSAICR +G+  DA          I PD DT+AILLE WEKE
Sbjct: 145 DVMDRYGLKHDAVALNSLLSAICRVEGRAQDAQDVFERTKATIPPDGDTFAILLEAWEKE 204

Query: 218 RDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIY-ETVNSLKRMMERGCNPG 276
            +   AK  FGEMV+ +GWD  NV AYDS+L TL++G  G+  E    L+ M  +GC PG
Sbjct: 205 GNAVRAKSVFGEMVVRIGWDAANVSAYDSFLSTLVRG--GLLDEAFKFLQVMRSKGCLPG 262

Query: 277 MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLL 336
           + FF  A +  +   +   A  IW  MV   G  P+  MY+ MI L+C +     A+ LL
Sbjct: 263 INFFSTAVDLVVRKGDYLNAVAIWHMMVSEAGLVPNFSMYSAMIGLHCNAGSIDDALGLL 322

Query: 337 DEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDS 396
           DEM  NG F +  TYN + E  +K RK  EA     EM KNE +    NC AA+ ++   
Sbjct: 323 DEMPLNGVFANSVTYNTILEGFIKHRKAREAESFLTEMSKNEQLPTASNCAAAISLFFKE 382

Query: 397 DDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFAL 456
            +P  AI  W+ ++E++ +   ++   L+AGL +     E  K A  M +  ++++   +
Sbjct: 383 FNPSAAIDVWRCIVEHNITPAEDSAKELIAGLLEFGRFTEVTKRADEMIDMRVELSRSTM 442

Query: 457 SKLKQILIKARKEAVYEELLKKCKAH 482
             +K+   KA +   Y+ + ++ K +
Sbjct: 443 ENMKRGFAKAGRHQSYDNIARRLKRY 468


>gi|242073718|ref|XP_002446795.1| hypothetical protein SORBIDRAFT_06g022830 [Sorghum bicolor]
 gi|241937978|gb|EES11123.1| hypothetical protein SORBIDRAFT_06g022830 [Sorghum bicolor]
          Length = 468

 Score =  335 bits (860), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 182/453 (40%), Positives = 257/453 (56%), Gaps = 11/453 (2%)

Query: 37  PTIKTLCEIIANTPSPTVEDVLDKTLIRVSQETVEQVLKFS--YSHPGPAVKFFRWSAYQ 94
           P  +   +II   P+  VE  L    I  + E  E VLK    Y  P  AV+FFRW+   
Sbjct: 19  PRAEAFLDIICRVPAGEVEAALSACGIGPTAEVAELVLKSCECYKRPKSAVRFFRWAGLS 78

Query: 95  LNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKEN---VLSLATFASVFSSYVVADRV 151
           L+  H+ YAWNL+VD+LGK  +F+ MWDAI+SM +E    ++S+ATFASVF+SY  +  +
Sbjct: 79  LS--HTAYAWNLLVDILGKAAMFEPMWDAIRSMHQEGGGRLVSVATFASVFASYCASGNL 136

Query: 152 KDAITTFDVMEQYGCKHDVFALNSLLSAICR-DGKTIDAWQFLRVVDGRIKPDNDTYAIL 210
           KDAI   DVM++YG K D  ALNSLLSAICR +G+   A          I PD DT+AIL
Sbjct: 137 KDAIAALDVMDRYGLKPDAVALNSLLSAICRVEGRAQAAHDVFERTKATIPPDADTFAIL 196

Query: 211 LEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIY-ETVNSLKRMM 269
           LE  EKE +   AK  FGEMV+ VGWD  NVPAYDS+L TL++G  G++ E    L+ M 
Sbjct: 197 LEACEKEGNAMRAKSVFGEMVVRVGWDAANVPAYDSFLSTLVRG--GLFDEAFKFLQVMR 254

Query: 270 ERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNET 329
            +GC PG+ FF  A +  +  ++   A  IW  MV   G  P+  MYN MI LYC +   
Sbjct: 255 SKGCLPGIKFFATAVDLVVLKRDYPNAVAIWNLMVSEAGLVPNFSMYNAMIGLYCNAGAM 314

Query: 330 GAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAA 389
             A+ +LDEM  NG F +  TYN + E  +K  K  EA     EM KNE +    NC AA
Sbjct: 315 DYALGMLDEMPLNGVFANSVTYNTILEGFIKHCKAREAERFLTEMSKNEQLPTASNCAAA 374

Query: 390 VRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
           + ++    +P  AI  W+ ++E++ +   ++   L+AGL D   L E  + A  M +  +
Sbjct: 375 ISLFFKEFNPSAAIDVWRCIVEHNITPAEDSAKELIAGLLDFGRLTEVERRADEMIDMRV 434

Query: 450 QVTPFALSKLKQILIKARKEAVYEELLKKCKAH 482
           +++   +  +K+   KA++   Y+ + ++ K H
Sbjct: 435 ELSRSTMDNMKRAFAKAQRHQSYDRIARRLKRH 467


>gi|115459468|ref|NP_001053334.1| Os04g0520900 [Oryza sativa Japonica Group]
 gi|21741854|emb|CAD41444.1| OSJNBa0019D11.15 [Oryza sativa Japonica Group]
 gi|113564905|dbj|BAF15248.1| Os04g0520900 [Oryza sativa Japonica Group]
 gi|116310729|emb|CAH67525.1| OSIGBa0131L05.6 [Oryza sativa Indica Group]
 gi|125549050|gb|EAY94872.1| hypothetical protein OsI_16672 [Oryza sativa Indica Group]
 gi|125591012|gb|EAZ31362.1| hypothetical protein OsJ_15488 [Oryza sativa Japonica Group]
 gi|215697100|dbj|BAG91094.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 464

 Score =  328 bits (841), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 173/449 (38%), Positives = 251/449 (55%), Gaps = 8/449 (1%)

Query: 37  PTIKTLCEIIANTPSPTVEDVLDKTLIRVSQETVEQVLK--FSYSHPGPAVKFFRWSAYQ 94
           P  +   EI+        E  L    I  + E  EQVL+    YS P  AV+FF WS   
Sbjct: 17  PRAEAFLEILGRVQPGDAEAELSSCGIGPTAEVAEQVLRSRVCYSRPKSAVRFFVWSGRS 76

Query: 95  LNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKEN--VLSLATFASVFSSYVVADRVK 152
           +  KH+ YAWNL+VD+LGK  + + MWDA+++M KE   ++++ATFAS+FSSY  +  ++
Sbjct: 77  V--KHTGYAWNLLVDILGKADMEEPMWDAVRTMNKEGGGLVTVATFASIFSSYCASGNLR 134

Query: 153 DAITTFDVMEQYGCKHDVFALNSLLSAICR-DGKTIDAWQFLRVVDGRIKPDNDTYAILL 211
            A+  FDVM +YG + D  ALNSLLSA+CR +G+   A          + PD DT+ ILL
Sbjct: 135 KAVEAFDVMGKYGVEPDAVALNSLLSAMCRGEGRAQAAQDLFERTKATVAPDADTFGILL 194

Query: 212 EGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMER 271
           E WEKE +   AK TFGEM++ VGWD  N+PAYD++L TL++G D   E +  L+ M  +
Sbjct: 195 EAWEKEGNAQRAKSTFGEMIVRVGWDAGNMPAYDAFLSTLVRG-DQFGEALKFLQVMRSK 253

Query: 272 GCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGA 331
           GC PG+ FF  A +  +  ++   +  IW  M+   G  P+  MYN MI L C   +T  
Sbjct: 254 GCLPGLKFFARAIDLVVRKRDYANSLAIWQMMISDAGLVPNLPMYNAMIDLCCSVGDTDY 313

Query: 332 AMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVR 391
           A+++LDEM +NG F D  TYN + E L+K RK  EA     EM KNE + +  NC AA+ 
Sbjct: 314 ALRMLDEMPFNGVFADFITYNAILEGLIKQRKAREAEAFLAEMSKNEQLPSPTNCAAAIS 373

Query: 392 VYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQV 451
           ++    +P  AI  W  ++E+  +   E+   L+ GL D     E  KY   M + GI++
Sbjct: 374 MFSKEFNPSAAIDVWHCIVEHQITPADESARELIVGLLDFGRFAEVKKYTDEMLDMGIEL 433

Query: 452 TPFALSKLKQILIKARKEAVYEELLKKCK 480
               +  +K+   K  K   Y+ + ++ K
Sbjct: 434 PQSTIDNMKRTFDKVGKHHTYDHIARRPK 462


>gi|357164743|ref|XP_003580152.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
           mitochondrial-like isoform 1 [Brachypodium distachyon]
 gi|357164746|ref|XP_003580153.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
           mitochondrial-like isoform 2 [Brachypodium distachyon]
          Length = 465

 Score =  325 bits (833), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 180/446 (40%), Positives = 247/446 (55%), Gaps = 8/446 (1%)

Query: 40  KTLCEIIANTPSPTVEDVLDKTLIRVSQETVEQVLK--FSYSHPGPAVKFFRWSAYQLND 97
           +   EI+  TP   VE  L    +  + +  EQVLK    YS P  AV+FFRW++  L  
Sbjct: 21  EAFLEIVERTPLGEVETALISCNVVPTADVAEQVLKSDICYSRPKSAVRFFRWASKSL-- 78

Query: 98  KHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKE--NVLSLATFASVFSSYVVADRVKDAI 155
           K + YAWNL++D+LGK  +F+ MWDAI+SM +E   +LS+ATFAS+F+SY      KDA 
Sbjct: 79  KLTAYAWNLLIDILGKASMFEPMWDAIRSMSQEEGGLLSVATFASMFASYCSRGNFKDAA 138

Query: 156 TTFDVMEQYGCKHDVFALNSLLSAICR-DGKTIDAWQFLRVVDGRIKPDNDTYAILLEGW 214
             FDVME YG   D  ALNSLLSA+CR D     A        G++ PD DT+AILLE W
Sbjct: 139 RAFDVMELYGVPPDAVALNSLLSAMCRRDDGAQAALDLFERSKGKVAPDADTFAILLEAW 198

Query: 215 EKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCN 274
           EKE +V  AK TFGEM++ VGWD  N+PA+D++L TL++G D   E +  L  M   GC 
Sbjct: 199 EKEGNVQRAKSTFGEMIVRVGWDSRNIPAHDAFLTTLVRG-DQFNEALKFLNVMRTNGCL 257

Query: 275 PGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMK 334
           PG+ FF  A +  +   +   A  IW  MV   G  P+  MYN +I+L      T  A  
Sbjct: 258 PGLKFFANAIDLVVRKADYVNAIPIWQMMVSDAGIVPNLPMYNAIIALCSSVGNTDYAFN 317

Query: 335 LLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYM 394
           +LDEM  NG F D  TYN + E L+K  K  E  G   EM KNE + +  NC AA+ ++ 
Sbjct: 318 MLDEMPLNGVFADSVTYNAILEGLIKQCKARETEGFLMEMSKNEQLPSAPNCAAAISLFS 377

Query: 395 DSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPF 454
              +P  AI  W  ++E+  +   E+   L+ GL D     +   Y   M + GI++   
Sbjct: 378 KEFNPSAAIDVWHCIVEHQITPAEESAKELITGLLDFSRFAQVKIYTDEMLDMGIELPQS 437

Query: 455 ALSKLKQILIKARKEAVYEELLKKCK 480
            + K+K    KA K   Y+++ ++ K
Sbjct: 438 IIEKMKHTFDKAGKRQTYDQIARRLK 463


>gi|413921119|gb|AFW61051.1| hypothetical protein ZEAMMB73_101655 [Zea mays]
          Length = 461

 Score =  325 bits (833), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 176/448 (39%), Positives = 249/448 (55%), Gaps = 9/448 (2%)

Query: 37  PTIKTLCEIIANTPSPTVEDVLDKTLIRVSQETVEQVLKFS--YSHPGPAVKFFRWSAYQ 94
           P  +   EII   P+  VE  L    I  + E  E VLK    Y  P  AV+FFRW+   
Sbjct: 17  PRAEAFLEIICRVPAGEVEAALSACGIGPTAEVEELVLKSRECYKRPKSAVRFFRWAGQS 76

Query: 95  LNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDA 154
           ++  H+ YAWNL+VD+LGK  +F++MWDAI+SMK+E    L + A+ F+SY  A  +KDA
Sbjct: 77  VS--HTAYAWNLLVDILGKAAMFESMWDAIRSMKQEGGSGLVSVAT-FASYCTAGNIKDA 133

Query: 155 ITTFDVMEQYGCKHDVFALNSLLSAICR-DGKTIDAWQFLRVVDGRIKPDNDTYAILLEG 213
           I   DVM++YG KHD  ALNSLLSAICR +G+  DA          I PD DT+AILLE 
Sbjct: 134 IAALDVMDRYGLKHDAVALNSLLSAICRVEGRVQDAQDVFERTKATIPPDGDTFAILLEA 193

Query: 214 WEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIY-ETVNSLKRMMERG 272
           WEKE +   AK  FGEMV+ +GWD  NV AYDS+L TL++G  G+  E    L+ M  +G
Sbjct: 194 WEKEGNAVRAKSVFGEMVVRIGWDAANVSAYDSFLSTLVRG--GLLDEAFKFLQVMRSKG 251

Query: 273 CNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAA 332
           C PG+ FF  A +  +   +   A  IW  MV   G  P+  MY+ MI L+C +     A
Sbjct: 252 CLPGINFFSTAVDLVVRKGDYLNAVAIWHMMVSEAGLVPNFSMYSAMIGLHCNAGSIDDA 311

Query: 333 MKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRV 392
           + LLDEM  N  F +  TY+ + E  +K RK  EA     EM KNE +    NC AA+ +
Sbjct: 312 LGLLDEMPLNDVFANSVTYHTILEGFIKHRKAREAESFLTEMSKNEQLPTASNCAAAISL 371

Query: 393 YMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVT 452
           +    +P  +I  W+ + E++ +   ++   L+AGL D     E  K A  M +  ++++
Sbjct: 372 FFKEFNPSASIDVWRCIEEHNITLAEDSAKELIAGLLDFGRFTEVTKRADEMIDMRVELS 431

Query: 453 PFALSKLKQILIKARKEAVYEELLKKCK 480
              +  +K+   KA +   Y+ + ++ K
Sbjct: 432 RSTMENMKRAFAKAGRHQSYDNIARRLK 459


>gi|125583433|gb|EAZ24364.1| hypothetical protein OsJ_08117 [Oryza sativa Japonica Group]
          Length = 438

 Score =  315 bits (808), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 165/353 (46%), Positives = 221/353 (62%), Gaps = 6/353 (1%)

Query: 65  VSQETVEQVLKFSYSHPGPAVKFFRWSAYQ-LNDKHSPYAWNLVVDLLGKNCLFDAMWDA 123
           V+   VEQVL+FSY+HP  AV FFRW+ ++ L  +HSPY+WNLVVDLLGKN LF+ MWD 
Sbjct: 69  VTSSDVEQVLRFSYAHPRAAVAFFRWAGHRHLRHQHSPYSWNLVVDLLGKNRLFEPMWDT 128

Query: 124 IKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRD 183
           + SM+ + +LSLATFASVFSS + A+     +  F  +  YG   D  ALNSLLSA+CR 
Sbjct: 129 VSSMRTQGLLSLATFASVFSS-LAANPASSPLRAFVELPMYGMDRDTPALNSLLSALCRA 187

Query: 184 GKTIDAWQFLRVV--DGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNV 241
            +  DA   + V   +   +PD D+YAILLEG E   D   A++ F EM   +G+DP NV
Sbjct: 188 SRLDDARAAIPVARAEAGTRPDADSYAILLEGCEAAGDPHVAREVFDEMRHVIGFDPANV 247

Query: 242 PAYDSYLITLLKG--CDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFI 299
           PAYDS+L TL+       + + ++ L  +  + C+PG  FF+ A    L  + LRGA  +
Sbjct: 248 PAYDSFLTTLISSGSSTALMDAMDYLAILHRQRCSPGEKFFRAALAAHLKARELRGAVVL 307

Query: 300 WGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLV 359
           W   V R G  PD  MY+ MI L          ++ LDEM ++G FPD  TYN++F+FL+
Sbjct: 308 WNDFVVRRGLIPDKEMYSTMIMLQGTLGHPEVIVEYLDEMTFDGVFPDADTYNMVFQFLL 367

Query: 360 KGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIEN 412
           KGRKL EAS +F+EMVKNE   N  NC  A+R+++D+ D    IK WK M+EN
Sbjct: 368 KGRKLREASAIFSEMVKNEFWPNEANCSLALRMFLDTRDWDSGIKLWKCMVEN 420


>gi|238011542|gb|ACR36806.1| unknown [Zea mays]
          Length = 369

 Score =  269 bits (687), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 156/359 (43%), Positives = 209/359 (58%), Gaps = 18/359 (5%)

Query: 7   RRHHDDPSPD-PHNKRKRSTFASHLDVPNLPPTIKTLCEIIAN-TPSPTVEDVLDKTLIR 64
           +R  D P+P  P NK          + P++ P  +  C+I+A+      +   LDK  IR
Sbjct: 22  KRARDPPAPALPTNK----------EAPDMAPKTRIFCDILASRADDEELNAELDKADIR 71

Query: 65  VSQETVEQVLKFSYSHPGPAVKFFRWSAYQ-LNDKHSPYAWNLVVDLLGKNCLFDAMWDA 123
           VS   VEQVL+FSY+HP  A  FFRW+ Y+ L  +HSPY+WNL+VD+LGKN LF+ MWD 
Sbjct: 72  VSIADVEQVLRFSYAHPRAAAAFFRWAGYRYLGHEHSPYSWNLLVDILGKNRLFEPMWDT 131

Query: 124 IKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRD 183
           +KSM+ + +LSLATFAS+FSS + A      +  F  M +YG   D  ALNSLLSA+CR 
Sbjct: 132 VKSMQSQQLLSLATFASIFSS-LAATPGGSPLKAFMDMPRYGMTRDTPALNSLLSALCRA 190

Query: 184 GKTIDAWQFLRVV--DGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNV 241
            +  DA   + V   +   +PD D+YAILLEG E   D+  A++ F EMV  +G+ PDNV
Sbjct: 191 NRLDDARAAIPVARAEAGTRPDADSYAILLEGSEAAADLRVAREVFDEMVQAIGFYPDNV 250

Query: 242 PAYDSYLITLLKG--CDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFI 299
           PAYDS+L TL+       + E +  L  +   GC+PG  FF+ A    L  + LRGA  +
Sbjct: 251 PAYDSFLTTLVSSDSSTALPEAMEYLNVLSRHGCSPGEKFFRAALAAHLDARQLRGAMNL 310

Query: 300 WGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFL 358
           W   VGR G  PD  MYN MI L          +  LD+M+ NG FPD  TYN++ + L
Sbjct: 311 WDDFVGRRGLVPDMEMYNTMIKLQGSLGHAELIVGYLDDMISNGVFPDTNTYNVVLQLL 369


>gi|413951473|gb|AFW84122.1| hypothetical protein ZEAMMB73_475584 [Zea mays]
          Length = 354

 Score =  249 bits (637), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 146/377 (38%), Positives = 192/377 (50%), Gaps = 58/377 (15%)

Query: 44  EIIANTPSPTVEDVLDKTLIRVSQETVEQVLKF--SYSHPGPAVKFFRWSAYQLNDKHSP 101
           EII       VE  L    I  + E  E VLK    Y  P  +V+FFRW+   ++  H+ 
Sbjct: 25  EIICRVLVGEVEAALSACGIGPTAEVEELVLKSRECYKRPKSSVRFFRWAGQSVS--HTA 82

Query: 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKEN---VLSLATFASVFSSYVVADRVKDAITTF 158
           YAWNL+VD+LGK  +F+ MWDAI+SMK+E    ++S+ATFASVF+SY  A  +KDAI   
Sbjct: 83  YAWNLLVDILGKAAMFEPMWDAIRSMKQEGGGGLVSVATFASVFASYCAAGNIKDAIAAL 142

Query: 159 DVMEQYGCKHDVFALNSLLSAICR-DGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKE 217
           DVM++YG KHD  ALNSLLSAICR +G+  DA          I PD DT+AILLE WEKE
Sbjct: 143 DVMDRYGLKHDAVALNSLLSAICRVEGRMQDAQDVFERTKATIPPDGDTFAILLEAWEKE 202

Query: 218 RDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGM 277
            +   AK  FGEMV+ +GWD  N                G Y    ++  MM        
Sbjct: 203 GNAVRAKSVFGEMVVRIGWDAAN----------------GDYLNAVAIWHMM-------- 238

Query: 278 TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLD 337
                                     V   G  P+  MY+ MI L+C +     A+ LLD
Sbjct: 239 --------------------------VSEAGLVPNFSMYSAMIGLHCNAGSIDDALGLLD 272

Query: 338 EMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSD 397
           EM  NGAF +  TY+ + E  +  RK  EA     EM KNE +    NC  A+ ++    
Sbjct: 273 EMPLNGAFANSVTYHTILEGFINNRKAREAESFLTEMSKNEQLPTASNCDVAISLFFKEF 332

Query: 398 DPYVAIKFWKYMIENHC 414
           +P  AI  W+ + E++C
Sbjct: 333 NPSAAIDVWRCIEEHNC 349


>gi|326502308|dbj|BAJ95217.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 513

 Score =  229 bits (585), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 140/332 (42%), Positives = 187/332 (56%), Gaps = 5/332 (1%)

Query: 155 ITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV--DGRIKPDNDTYAILLE 212
           +  F  M +YG   D  ALNSLLSA+CR  +  DA   + V   +   +PD D+YAILLE
Sbjct: 183 LKAFVEMPRYGMDRDTPALNSLLSALCRASRLDDARAAIPVARAEAGTRPDADSYAILLE 242

Query: 213 GWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG--CDGIYETVNSLKRMME 270
           G E   + A A++ F EMV  + +DP NVPAYDS+L TL+       + + +  L  +  
Sbjct: 243 GCEAAGNAAVAREVFDEMVHALDFDPANVPAYDSFLTTLVSSGSSTALSDAMEYLAVLRR 302

Query: 271 RGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETG 330
             C+PG  F + A    L  + LR A  +W   V R G  PD  MY  MI L        
Sbjct: 303 YRCSPGEKFLRAALAAYLEARELRSAVVLWDEFVLRRGLVPDKEMYTTMIMLQGTLGHAE 362

Query: 331 AAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAV 390
             +K LDEM   G FPD  TYN++ + L+KGRKL EAS +F EMVKNE   N  NC  A+
Sbjct: 363 VTVKYLDEMAIYGVFPDADTYNVVLKLLLKGRKLREASAIFKEMVKNECWPNEANCSLAL 422

Query: 391 RVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQ 450
            +++D+ D    IK WK M  N    L E GN+LV+ L D  MLPEA KYA+ M ++GI+
Sbjct: 423 GMFLDTRDWDTGIKVWKCMAANSLPPLEEGGNMLVSKLKD-EMLPEACKYAEDMIDQGIK 481

Query: 451 VTPFALSKLKQILIKARKEAVYEELLKKCKAH 482
           ++   L+KLK  L K +K A+++ L  K KAH
Sbjct: 482 LSSSTLTKLKHSLGKVKKGAIHDRLFAKWKAH 513


>gi|413917805|gb|AFW57737.1| hypothetical protein ZEAMMB73_139699 [Zea mays]
          Length = 276

 Score =  224 bits (570), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 121/244 (49%), Positives = 152/244 (62%), Gaps = 11/244 (4%)

Query: 44  EIIANTPSPTVEDVLDKTLIRVSQETVEQVLKF--SYSHPGPAVKFFRWSAYQLNDKHSP 101
           EII   P+  VE  L    I  + E  E VLK    Y  P  AV FFRW+   ++  H+ 
Sbjct: 27  EIICRVPAGEVEAALSACGIGPTAEVEELVLKSRECYKRPKSAVCFFRWAGQSVS--HTA 84

Query: 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKEN---VLSLATFASVFSSYVVADRVKDAITTF 158
           YAWNL VD+LGK  +F+ MWDAI+SMK+E    ++S+ATFASVF+SY  A  +KDAI   
Sbjct: 85  YAWNLHVDILGKAAMFEPMWDAIRSMKQEGGGGLVSVATFASVFASYCAAGNIKDAIAAL 144

Query: 159 DVMEQYGCKHDVFALNSLLSAICR-DGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKE 217
           DVM++YG KHD  ALNSLLSAICR +G+  DA          I  D DT+AILLE WEKE
Sbjct: 145 DVMDRYGLKHDSVALNSLLSAICRVEGRAQDAQDVFERTKATIPSDGDTFAILLEAWEKE 204

Query: 218 RDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIY-ETVNSLKRMMERGCNPG 276
            +   AK  FGEMV+ +GWD  NV  YDS+L TL++G  G+  E    L+ M  +GC PG
Sbjct: 205 GNAVRAKSVFGEMVVRIGWDAANVSVYDSFLSTLVRG--GLLDEAFKFLQVMRSKGCLPG 262

Query: 277 MTFF 280
           + FF
Sbjct: 263 INFF 266


>gi|242064592|ref|XP_002453585.1| hypothetical protein SORBIDRAFT_04g008520 [Sorghum bicolor]
 gi|241933416|gb|EES06561.1| hypothetical protein SORBIDRAFT_04g008520 [Sorghum bicolor]
          Length = 436

 Score =  209 bits (531), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 165/491 (33%), Positives = 238/491 (48%), Gaps = 64/491 (13%)

Query: 1   MARNDKRRHHDDPSPDPHNKRKRSTFASHLDVPNLPPTIKTLCEIIANTPSPTVEDVLDK 60
           MA +  +R  D  SP          F ++ +   LP   +   +I+A+     ++  LD+
Sbjct: 1   MASSAAKRARDPSSP---------AFPTNKEASELPHKTRIFYDILASRADDDMDAALDE 51

Query: 61  TLIR-VSQETVEQVLKFSYSHPGPAVKFFRWSAYQL--NDKHSPYAWNLVVDLLGKNCLF 117
             IR V+   VEQVL  SY+HP  A  FF W+ +    +D HSPY+WNLVVD+LG N LF
Sbjct: 52  ADIRGVTTADVEQVLHLSYAHPHAAAAFFHWAGHWHLGHDNHSPYSWNLVVDILGANRLF 111

Query: 118 DAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLL 177
                     +      L  F                    D M +YG   D+ ALNS L
Sbjct: 112 ---------TRIPGCSPLKAF-------------------MDDMPRYGMARDMSALNSFL 143

Query: 178 SAICRDGKTIDAWQFLRVVDGRIKP--DNDTYAILLEGWEKERDVANAKKTFGEMVIEVG 235
           SA+CR  +  DA   + V         D D+YAILLE  E   D   A+    EMV ++G
Sbjct: 144 SALCRADRLDDARAAIPVAHAEAGTLLDADSYAILLECCEAAADTRGARDVCDEMVHDIG 203

Query: 236 WDPDNVPAYDSYLITLLKGCD--GIYETVNSLKRMMERGCNPGM--TFFKLAFEECLTGQ 291
             PDN+PAY+++L  L+       + E +  L  + +R C+PG    FF       L   
Sbjct: 204 VGPDNMPAYEAFLAMLVSSNSSMALLEAMYYLDFLNKRSCSPGAGERFFCAVVAVHLEAG 263

Query: 292 NLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTY 351
            LRGA ++W   VGR G  PD  MYN MI L          +  LD+M++NG  PD  TY
Sbjct: 264 ELRGATYLWDKFVGRRGLVPDMEMYNTMIMLQGSLGHVEVIVDYLDDMIFNGLVPDTNTY 323

Query: 352 NILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIE 411
           N+    L++ R+L +A+ +F+EMVKNE   N  NC  A+R+++D+      I+ W  ++E
Sbjct: 324 NVFLLILLERRELHKAATIFSEMVKNECWPNEGNCSLALRLFLDARYWETGIRIWSCVVE 383

Query: 412 NHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAV 471
           N    L E GN+LV+ L                  K  +++   LSKLK  + K +K  +
Sbjct: 384 NGLPPLEECGNMLVSKL------------------KDDKLSSSTLSKLKLCMQKIKKRDI 425

Query: 472 YEELLKKCKAH 482
           Y++LL+K +AH
Sbjct: 426 YDDLLRKWEAH 436


>gi|414586334|tpg|DAA36905.1| TPA: hypothetical protein ZEAMMB73_204717 [Zea mays]
          Length = 239

 Score =  204 bits (519), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 106/206 (51%), Positives = 132/206 (64%), Gaps = 8/206 (3%)

Query: 44  EIIANTPSPTVEDVLDKTLIRVSQETVEQVLKFS--YSHPGPAVKFFRWSAYQLNDKHSP 101
           EII   P+  VE  L    I  + E  E VLK    Y  P  AV+FFRW+   ++  H+ 
Sbjct: 27  EIICRVPAGEVEAALSACGIGPTAEVEELVLKSRECYKRPKSAVRFFRWAGQSVS--HTA 84

Query: 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKEN---VLSLATFASVFSSYVVADRVKDAITTF 158
           YAWNL+VD+LGK  +F+ MWDAI+SMK+E    ++S+ATFASVF+SY  A  +KDAI   
Sbjct: 85  YAWNLLVDILGKAAMFEPMWDAIRSMKQEGGGGLVSVATFASVFASYCAAGNIKDAIAAL 144

Query: 159 DVMEQYGCKHDVFALNSLLSAICR-DGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKE 217
           DVM++YG KHD  ALNSLLSAICR +G+  DA          I PD DT+AILLE WEKE
Sbjct: 145 DVMDRYGLKHDAVALNSLLSAICRVEGRAQDAQDVFERTKATIPPDGDTFAILLEAWEKE 204

Query: 218 RDVANAKKTFGEMVIEVGWDPDNVPA 243
            +   AK  FGEMV+ +GWD  NV A
Sbjct: 205 GNAVRAKSVFGEMVVRIGWDAANVSA 230


>gi|359492357|ref|XP_002284592.2| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Vitis vinifera]
          Length = 476

 Score =  201 bits (511), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 134/442 (30%), Positives = 224/442 (50%), Gaps = 6/442 (1%)

Query: 37  PTIKTLCEIIANTPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLN 96
           PT K +C+I+ + P   ++  L ++ IRVS   VE VLK   +    A +FF W+  Q N
Sbjct: 14  PT-KRICKIMISCPKLELDTSLSESGIRVSPIVVENVLKRFENAGMLAYQFFEWAGKQRN 72

Query: 97  DKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAIT 156
             HS  A++ +++ L K   +  MWD +  M+   +L++ TF  +   Y  + +VK+A+ 
Sbjct: 73  YTHSIRAYHTMIESLAKIRQYQIMWDLVNKMRSLKILNVETFCIIMRKYARSQKVKEAVY 132

Query: 157 TFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEK 216
           TF++ME+Y    ++ A NSLLSA+C+    + A +    +  +  PD+ TY+ILLEGW K
Sbjct: 133 TFNIMEKYDVPPNLAAFNSLLSALCKSKNVVKAQEIFNGMKDQFIPDSKTYSILLEGWGK 192

Query: 217 ERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPG 276
             ++  A++ F EMV ++G DPD V      ++ +L     + E V  +K M    C P 
Sbjct: 193 APNLPKAREIFREMV-DMGCDPDIVTY--GIMVDILCKAGRVDEAVGIVKEMDSSVCKPT 249

Query: 277 MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLL 336
              + +          +  A + +  M  R     D  +YN +I  +C  N+   A ++L
Sbjct: 250 SFIYSVLVHTYGIENRIEDAVYTFLDM-ERNEIEADVAVYNALIGAFCKVNKLKNAYRVL 308

Query: 337 DEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDS 396
           +EM   G  P+ +T NI+   L+      EA  +F  M+K  +  + +     ++++ ++
Sbjct: 309 NEMDCKGIRPNSRTCNIILNSLISCGDTDEAFRVFRRMIKVCDP-DADTYTMMIKMFCEN 367

Query: 397 DDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFAL 456
           D   +A+K WKYM          T ++L+ GLC      +A    + M EKGI+ +    
Sbjct: 368 DKLEMALKVWKYMRLKQFVPSMHTFSVLINGLCKKGNASKACILLEEMIEKGIRPSSVTF 427

Query: 457 SKLKQILIKARKEAVYEELLKK 478
            KLKQ+LIK  +E V E L +K
Sbjct: 428 GKLKQLLIKEGREDVLEFLQEK 449


>gi|11079489|gb|AAG29201.1|AC078898_11 hypothetical protein [Arabidopsis thaliana]
          Length = 481

 Score =  201 bits (510), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 129/453 (28%), Positives = 230/453 (50%), Gaps = 5/453 (1%)

Query: 26  FASHLDVPNLPPTIKTLCEIIANTPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAV 85
           ++S   V ++    K + +++ ++P   ++  LD++ +RVSQE VE VL    +      
Sbjct: 23  YSSSEQVRDVADVAKNISKVLMSSPQLVLDSALDQSGLRVSQEVVEDVLNRFRNAGLLTY 82

Query: 86  KFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSY 145
           +FF+WS  Q + +HS  A++++++   K   +  MWD I +M+K+ +L++ TF  V   Y
Sbjct: 83  RFFQWSEKQRHYEHSVRAYHMMIESTAKIRQYKLMWDLINAMRKKKMLNVETFCIVMRKY 142

Query: 146 VVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDND 205
             A +V +AI  F+VME+Y    ++ A N LLSA+C+      A +    +  R  PD+ 
Sbjct: 143 ARAQKVDEAIYAFNVMEKYDLPPNLVAFNGLLSALCKSKNVRKAQEVFENMRDRFTPDSK 202

Query: 206 TYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSL 265
           TY+ILLEGW KE ++  A++ F EM I+ G  PD V    S ++ +L     + E +  +
Sbjct: 203 TYSILLEGWGKEPNLPKAREVFREM-IDAGCHPDIVTY--SIMVDILCKAGRVDEALGIV 259

Query: 266 KRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCY 325
           + M    C P    + +      T   L  A   +  M  R G + D  ++N +I  +C 
Sbjct: 260 RSMDPSICKPTTFIYSVLVHTYGTENRLEEAVDTFLEM-ERSGMKADVAVFNSLIGAFCK 318

Query: 326 SNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHEN 385
           +N      ++L EM   G  P+ ++ NI+   L++  +  EA  +F +M+K     + + 
Sbjct: 319 ANRMKNVYRVLKEMKSKGVTPNSKSCNIILRHLIERGEKDEAFDVFRKMIKVCEP-DADT 377

Query: 386 CRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMA 445
               ++++ +  +   A K WKYM +        T ++L+ GLC+     +A    + M 
Sbjct: 378 YTMVIKMFCEKKEMETADKVWKYMRKKGVFPSMHTFSVLINGLCEERTTQKACVLLEEMI 437

Query: 446 EKGIQVTPFALSKLKQILIKARKEAVYEELLKK 478
           E GI+ +     +L+Q+LIK  +E V + L +K
Sbjct: 438 EMGIRPSGVTFGRLRQLLIKEEREDVLKFLNEK 470


>gi|334183972|ref|NP_177860.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806398|sp|Q9FVX2.2|PP129_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g77360, mitochondrial; Flags: Precursor
 gi|332197848|gb|AEE35969.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 517

 Score =  201 bits (510), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 129/453 (28%), Positives = 230/453 (50%), Gaps = 5/453 (1%)

Query: 26  FASHLDVPNLPPTIKTLCEIIANTPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAV 85
           ++S   V ++    K + +++ ++P   ++  LD++ +RVSQE VE VL    +      
Sbjct: 59  YSSSEQVRDVADVAKNISKVLMSSPQLVLDSALDQSGLRVSQEVVEDVLNRFRNAGLLTY 118

Query: 86  KFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSY 145
           +FF+WS  Q + +HS  A++++++   K   +  MWD I +M+K+ +L++ TF  V   Y
Sbjct: 119 RFFQWSEKQRHYEHSVRAYHMMIESTAKIRQYKLMWDLINAMRKKKMLNVETFCIVMRKY 178

Query: 146 VVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDND 205
             A +V +AI  F+VME+Y    ++ A N LLSA+C+      A +    +  R  PD+ 
Sbjct: 179 ARAQKVDEAIYAFNVMEKYDLPPNLVAFNGLLSALCKSKNVRKAQEVFENMRDRFTPDSK 238

Query: 206 TYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSL 265
           TY+ILLEGW KE ++  A++ F EM I+ G  PD V    S ++ +L     + E +  +
Sbjct: 239 TYSILLEGWGKEPNLPKAREVFREM-IDAGCHPDIVTY--SIMVDILCKAGRVDEALGIV 295

Query: 266 KRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCY 325
           + M    C P    + +      T   L  A   +  M  R G + D  ++N +I  +C 
Sbjct: 296 RSMDPSICKPTTFIYSVLVHTYGTENRLEEAVDTFLEM-ERSGMKADVAVFNSLIGAFCK 354

Query: 326 SNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHEN 385
           +N      ++L EM   G  P+ ++ NI+   L++  +  EA  +F +M+K     + + 
Sbjct: 355 ANRMKNVYRVLKEMKSKGVTPNSKSCNIILRHLIERGEKDEAFDVFRKMIKVCEP-DADT 413

Query: 386 CRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMA 445
               ++++ +  +   A K WKYM +        T ++L+ GLC+     +A    + M 
Sbjct: 414 YTMVIKMFCEKKEMETADKVWKYMRKKGVFPSMHTFSVLINGLCEERTTQKACVLLEEMI 473

Query: 446 EKGIQVTPFALSKLKQILIKARKEAVYEELLKK 478
           E GI+ +     +L+Q+LIK  +E V + L +K
Sbjct: 474 EMGIRPSGVTFGRLRQLLIKEEREDVLKFLNEK 506


>gi|356515931|ref|XP_003526650.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Glycine max]
          Length = 461

 Score =  199 bits (506), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 126/452 (27%), Positives = 228/452 (50%), Gaps = 5/452 (1%)

Query: 27  ASHLDVPNLPPTIKTLCEIIANTPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVK 86
           AS   + ++    + +C+++   P+  ++  L++T +RVS + VE VLK   +   PA +
Sbjct: 4   ASEAMIQDVGEASERVCKVMMTCPTLGLDTALNQTGVRVSPDLVENVLKRFENAGMPAFR 63

Query: 87  FFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYV 146
           FF W+  Q    HS  A++L+++ L K   +  +WD + +M+K+ +L++ TF  +   Y 
Sbjct: 64  FFEWAEKQRGYSHSIRAYHLMIESLAKIRQYQIVWDLVSAMRKKGMLNVETFCIMMRKYA 123

Query: 147 VADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDT 206
            A++V +A+ TF+VM++Y    ++ A N LLSA+C+      A +    + G+  PD  +
Sbjct: 124 RANKVDEAVYTFNVMDKYDVVPNLAAFNGLLSALCKSNNVRKAQEIFDAMKGQFVPDEKS 183

Query: 207 YAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLK 266
           Y+ILLEGW K  ++  A++ F EMV E G DPD V      ++ +L     + E V  +K
Sbjct: 184 YSILLEGWGKAPNLPRAREVFREMV-EAGCDPDVVTY--GIMVDVLCKAGRVDEAVEVVK 240

Query: 267 RMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYS 326
            M    C P    + +          +  A   +  M  + G + D   YN +I  +C  
Sbjct: 241 EMDVGNCRPTSFIYSVLVHTYGVEHRIEDAIDTFLEMAKK-GIKADVVAYNALIGAFCKV 299

Query: 327 NETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENC 386
           N+     ++L EM  NG  P+ +T N++   ++   +   A  +F  M+K     + +  
Sbjct: 300 NKFKNVHRVLKEMESNGVAPNSRTCNVIISSMIGQGQTDRAFRVFCRMIKLCEP-DADTY 358

Query: 387 RAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAE 446
              ++++ + ++  +A+K WKYM          T + L+ GLC+     +A    + M E
Sbjct: 359 TMMIKMFCEKNELEMALKIWKYMKSKQFVPSMHTFSALIKGLCEKDNAAKACVVMEEMIE 418

Query: 447 KGIQVTPFALSKLKQILIKARKEAVYEELLKK 478
           KGI+ +     +L+Q+LIK  +E V + L +K
Sbjct: 419 KGIRPSRITFGRLRQLLIKEGREDVLKFLHEK 450


>gi|255558584|ref|XP_002520317.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540536|gb|EEF42103.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 439

 Score =  199 bits (506), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 128/433 (29%), Positives = 221/433 (51%), Gaps = 5/433 (1%)

Query: 46  IANTPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWN 105
           + ++P+ T+   LD+  IRVS E VE VL+   +    A +FF W+  QL+  HS  A++
Sbjct: 1   MMSSPAVTLHTALDQNGIRVSPEIVEDVLRRFENAGMVAYRFFEWAEKQLHYTHSVRAYH 60

Query: 106 LVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYG 165
            +++ L K   +  MWD I +MK++ +L++ TF  +   Y  A ++++A+ TF+VME+Y 
Sbjct: 61  TMIESLAKIRQYQIMWDLINAMKRKRMLNVETFCIIMRKYARAQKLEEAVYTFNVMEKYD 120

Query: 166 CKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKK 225
              ++ A N L SA+C+      A +       R  PD+ TY ILLEGW K  ++  A++
Sbjct: 121 VPPNLAAFNGLFSALCKSKNVRKAQEIFDSSKDRFVPDSKTYTILLEGWGKTPNLPKARE 180

Query: 226 TFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFE 285
            F EMV +VG  PD V      ++ +L     + E ++ +K M    C P    + +   
Sbjct: 181 IFREMV-DVGCSPDIVTY--GIMVDILCKAGRVDEALDIVKEMDLTICKPTSFIYSVLIH 237

Query: 286 ECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAF 345
                  +  A   +  M  + G + D   YN +I  +C  N+     ++L+EM Y G  
Sbjct: 238 TYGIENRIEDAVDTFLGM-EKNGVKADVAAYNALIGAFCKVNKFKNVYRVLNEMDYKGMQ 296

Query: 346 PDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKF 405
           P+ +T NI+   L+   +  EA  +F  M+K     + +     ++++ + ++  +A+K 
Sbjct: 297 PNSRTLNIILNNLIARGETDEAFRVFRRMIKVCEP-DADTYTMMIKMFCERNELEMALKV 355

Query: 406 WKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIK 465
           WKYM + H      T ++L+ GLC+   +  A    + M EKGI+ +     +L+ +LIK
Sbjct: 356 WKYMKKKHFVPSMHTFSVLINGLCEEGDVSHACVMLEDMIEKGIRPSGVTFGRLRHLLIK 415

Query: 466 ARKEAVYEELLKK 478
             +E V E L +K
Sbjct: 416 EGREDVLEFLQQK 428


>gi|242064598|ref|XP_002453588.1| hypothetical protein SORBIDRAFT_04g008550 [Sorghum bicolor]
 gi|241933419|gb|EES06564.1| hypothetical protein SORBIDRAFT_04g008550 [Sorghum bicolor]
          Length = 365

 Score =  199 bits (505), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 129/339 (38%), Positives = 180/339 (53%), Gaps = 15/339 (4%)

Query: 26  FASHLDVPNLPPTIKTLCEIIANTPSPTVEDVLDKTLIR-VSQETVEQVLKFSYSHPGPA 84
           F ++ +  +LPP  +   +I+A+     V+  LDKT IR V+   VEQV      HP  A
Sbjct: 33  FPTNKEATDLPPKTRIFYDILASRTDDDVDATLDKTDIRGVTTVDVEQV------HPHAA 86

Query: 85  VKFFRWSAYQL--NDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVF 142
             FF W+ ++   +D HSP +WNL+VD+L  NCLF  MW+ + S+    +L L TFASVF
Sbjct: 87  TAFFHWAGHRHLDHDNHSPNSWNLIVDILSTNCLFTRMWETVDSIHSRRLLLLDTFASVF 146

Query: 143 SSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKP 202
           SS   +          D M +Y    D  ALNSLLSA+CR  +  DA   + V       
Sbjct: 147 SSLAASPGCCLLKAFMDDMLRYDMTRDTLALNSLLSALCRGDRLDDAHATILVARAEAGT 206

Query: 203 --DNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIY- 259
             D D+Y ILLE +E   D   A+  F +MV ++G D DNVPAYD++L TL+     +  
Sbjct: 207 LLDADSYTILLECYEATPDTRAARNVFDKMVRDIGVDLDNVPAYDAFLTTLVSSNSSMAL 266

Query: 260 -ETVNSLKRMMERGCNPGM--TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMY 316
            + +  L  +  RGC+PG+   FF+ A    L    LRGA ++W   VGR G   D  MY
Sbjct: 267 PKAMYYLDFLNRRGCSPGVGERFFRAALAVHLEVGELRGATYLWDKFVGRRGLVRDMEMY 326

Query: 317 NMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILF 355
           N MI L          +  LD+M++NG FP+  TYN++ 
Sbjct: 327 NRMIMLQGSLGHGEVIVDYLDDMIFNGLFPNTNTYNVVL 365


>gi|313851107|ref|NP_001186539.1| pentatricopeptide repeat protein [Zea mays]
 gi|312064725|gb|ADQ27447.1| pentatricopeptide repeat protein [Zea mays]
 gi|414872960|tpg|DAA51517.1| TPA: hypothetical protein ZEAMMB73_325693 [Zea mays]
          Length = 489

 Score =  199 bits (505), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 130/445 (29%), Positives = 227/445 (51%), Gaps = 10/445 (2%)

Query: 40  KTLCE-IIANTPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLND- 97
           K LC+ II+   +  +E  LD + +RV+ E  E VLK   +    A +FF W+  Q    
Sbjct: 42  KRLCKLIISCRKASALEHELDHSGVRVTPEIAESVLKHLDNAGMLAYRFFEWARKQKRGV 101

Query: 98  -KHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAIT 156
             H+  +++ VV  L K   +  MWD +  M+KE V ++ TF  +   Y  A ++ +A+ 
Sbjct: 102 CAHTVRSYHTVVTSLAKIRQYQLMWDVVAIMRKEGVANVETFGIIMRKYARAQKLDEAVY 161

Query: 157 TFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEK 216
           TF+VME+YG  H++ A NSLLSA+C+      A +    ++ R  PD  TY+ILLEGW +
Sbjct: 162 TFNVMEKYGVAHNLAAFNSLLSALCKSKNVRKAQEIFDKMNNRFSPDAKTYSILLEGWGR 221

Query: 217 ERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPG 276
              +   ++ + +M +  G  PD V      ++  L     + E V  ++ M  RGC P 
Sbjct: 222 APSLPKMREVYSDM-LAAGCQPDIVTY--GIMVDALCKTGRVEEAVCVVQDMSSRGCQPT 278

Query: 277 MTFFKLAFEECLTGQNLRGAEFIWGAM-VGRIGFRPDTHMYNMMISLYCYSNETGAAMKL 335
              + +       G ++R  + +   + + + G  PD  +YN +I+ +C   +   A ++
Sbjct: 279 TFIYSILVHT--YGVDMRIEDAVAAFLDMEKDGIMPDVVVYNALITAFCKVKKFENAFRV 336

Query: 336 LDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMD 395
           +D+M  +G  P+ +T+NI+   L+   K  EA  +F  M+K     + +     ++++ +
Sbjct: 337 MDDMQGHGISPNSRTWNIILNTLISLGKDDEAYRVFRSMIKRCKP-DSDTYTMMIKMFCE 395

Query: 396 SDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFA 455
           +D   +A+K WKYM          T ++L+ GLCD   + +A    + M EKGI+     
Sbjct: 396 NDKIEMALKVWKYMRLKQFLPSMHTFSVLINGLCDKGEVSQACVLLEDMIEKGIRPPGST 455

Query: 456 LSKLKQILIKARKEAVYEELLKKCK 480
             KL+Q+L+K  ++ V + L++K K
Sbjct: 456 FGKLRQLLLKEGRKDVLDFLVEKMK 480


>gi|242038757|ref|XP_002466773.1| hypothetical protein SORBIDRAFT_01g013990 [Sorghum bicolor]
 gi|241920627|gb|EER93771.1| hypothetical protein SORBIDRAFT_01g013990 [Sorghum bicolor]
          Length = 487

 Score =  195 bits (495), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 130/455 (28%), Positives = 232/455 (50%), Gaps = 13/455 (2%)

Query: 30  LDVPNLPPTIKTLCE-IIANTPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFF 88
           LD  +L    K LC+ II+   +  VE  LD + +RV+ E  E+VL+   +    A +FF
Sbjct: 33  LDASDLA---KRLCKLIISCRKASAVEHELDHSGVRVTPEVAERVLERLDNAGMLAYRFF 89

Query: 89  RWSAYQLND--KHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYV 146
            W+  Q      H+  +++ VV  L K   +  MWD +  M+KE V ++ TF+ +   Y 
Sbjct: 90  EWARRQKRGGCAHTVRSYHTVVASLAKIRQYQLMWDVVAVMRKEGVANVETFSIIMRKYA 149

Query: 147 VADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDT 206
            A +  +A+ TF++ME+YG  H++ A NSLL A+C+      A +    ++ R  PD  T
Sbjct: 150 RAQKFDEAVYTFNIMERYGVAHNLAAFNSLLGALCKSKNVRKAQEIFDKMNNRFSPDAKT 209

Query: 207 YAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLK 266
           Y+ILLEGW +  ++   ++ + +M +  G  PD V      ++  L     + E V  ++
Sbjct: 210 YSILLEGWGRAPNLPKMREVYSDM-LAAGCQPDIVTY--GIMVDALCKTGRVEEAVCVVQ 266

Query: 267 RMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAM-VGRIGFRPDTHMYNMMISLYCY 325
            M  RGC P    + +       G ++R  + +   + + + G  PD  +YN +++ +C 
Sbjct: 267 DMSSRGCQPTTFIYSVLVHT--YGVDMRIEDAVATFLDMEKDGIVPDVVVYNALVTAFCK 324

Query: 326 SNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHEN 385
             +   A +++D+M  +G  P+ +T+NI+   L+   K  EA  +F  M+K     + + 
Sbjct: 325 VKKFDNAFRVMDDMEGHGISPNSRTWNIILNTLISLGKDDEAYRVFRNMIKRCKP-DSDT 383

Query: 386 CRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMA 445
               ++++ ++D   +A+K WKYM          T ++L+ GLCD   + +A    + M 
Sbjct: 384 YTMMIKMFCENDKIEMALKVWKYMRLKQFLPSMHTFSVLINGLCDKGEVSQACVLLEDMI 443

Query: 446 EKGIQVTPFALSKLKQILIKARKEAVYEELLKKCK 480
           EKGI+       KL+Q+L+K  ++ V + L++K K
Sbjct: 444 EKGIRPPGSTFGKLRQLLLKEGRKDVLDFLVEKMK 478


>gi|224084978|ref|XP_002307458.1| predicted protein [Populus trichocarpa]
 gi|222856907|gb|EEE94454.1| predicted protein [Populus trichocarpa]
          Length = 440

 Score =  193 bits (491), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 125/426 (29%), Positives = 215/426 (50%), Gaps = 5/426 (1%)

Query: 53  TVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLG 112
           T++  LD++ +RVS++ VE VLK   +    A +FF W+  Q +  HS  A++ V+D L 
Sbjct: 8   TLDTALDQSGVRVSEQIVEDVLKKFENAGMVAYRFFEWAEKQRHYNHSVKAFHTVIDSLA 67

Query: 113 KNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFA 172
           K   +  MWD +K MK + ++++ TF  +   Y  A +V++A+ TF++M++Y    ++ A
Sbjct: 68  KIRQYQLMWDVVKVMKSKRMVNVETFCIIMRKYARAQKVEEAVYTFNIMDKYDVPPNLAA 127

Query: 173 LNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVI 232
            N LLSA+C+      A +    +  R  PD+ TY+ILLEGW K+ ++  A++ F EMV 
Sbjct: 128 FNGLLSALCKSKNVRKAQEIFDSIKDRFVPDSKTYSILLEGWGKDPNLPKAREIFREMVS 187

Query: 233 EVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQN 292
             G  PD V      ++ +L     + E +  +  M    C P    + +          
Sbjct: 188 N-GCRPDIVTY--GIMVDVLCKAGRVDEALGIVNEMDSTVCKPTPFIYSVLVHTYGIENR 244

Query: 293 LRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYN 352
           +  A   +  M    G  PD  +YN +I  +C +N      ++L+EM   G  P+ +T+N
Sbjct: 245 IEDAVSTFLEMENN-GIEPDVAVYNALIGAFCKANRLKNVYRVLNEMDCKGVTPNSRTFN 303

Query: 353 ILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIEN 412
           I+   L+   +  EA  +F  M+K     + +     ++++ + D+   A+K WKYM   
Sbjct: 304 IILSSLIGRGETDEAYRVFLRMIKVCEP-DADTYTMMIKMFCERDELKKALKVWKYMKLK 362

Query: 413 HCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVY 472
                  T  +L+ GLC+   + +A    + M EKGI+ +     +L+Q+LIK  +E V 
Sbjct: 363 RFMPSMHTFQVLINGLCEKGDVTQACVLLEEMIEKGIRPSGVTFGRLRQLLIKEGREDVL 422

Query: 473 EELLKK 478
           + L KK
Sbjct: 423 KFLQKK 428


>gi|297842515|ref|XP_002889139.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297334980|gb|EFH65398.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 482

 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 129/454 (28%), Positives = 231/454 (50%), Gaps = 7/454 (1%)

Query: 26  FASHLDVPNLPPTIKTLCEIIANTPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGP-A 84
           ++S   V ++    K + +++ ++P   ++  LD++ +RVS E VE VL + + + G  A
Sbjct: 24  YSSSEQVRDVADVAKNISKVLMSSPQLVIDSALDQSGLRVSPEVVEDVL-YRFRNAGLLA 82

Query: 85  VKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSS 144
            +FF+WS  Q + +HS  A++++++   K   +  MWD I +M K+ +L++ TF  V   
Sbjct: 83  YRFFQWSEKQRHYEHSVRAYHMMIESTAKIRQYKLMWDLINAMMKKKMLNVETFCIVMRK 142

Query: 145 YVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDN 204
           Y  A +V +AI  F+VME+Y    ++ A N LLSA+C+      A +    +  R  PD+
Sbjct: 143 YARAQKVDEAIYAFNVMEKYDLPPNLVAFNGLLSALCKSKNVRKAQEIFENMRDRFTPDS 202

Query: 205 DTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNS 264
            TY+ILLEGW KE ++  A++ F EMV + G  PD V    S ++ +L     + E +  
Sbjct: 203 KTYSILLEGWGKEPNLPKAREVFREMV-DAGSLPDIVTY--SIMVDILCKAGRVDEALGI 259

Query: 265 LKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYC 324
           ++ M    C P    + +      T   L  A   +  M  R G + D  ++N +I  +C
Sbjct: 260 VRSMDPSICKPTTFIYSVLVHTYGTETRLEEAVDTFLEM-ERSGMKADVAVFNSLIGAFC 318

Query: 325 YSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHE 384
            +N      ++L EM   G  P+ ++ NI+   L+   +  EA  +F +M+K     + +
Sbjct: 319 KTNRMKNVYRVLKEMKSKGVTPNSKSCNIILRHLIDRGEKDEAFDVFRKMIKVCEP-DAD 377

Query: 385 NCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGM 444
                ++++ +  +   A K WKYM +        T ++L+ GLC+     +A    + M
Sbjct: 378 TYTMMIKMFCEKKEMETADKVWKYMRKKGVFPSMHTFSVLINGLCEEPNTQKACVLLEEM 437

Query: 445 AEKGIQVTPFALSKLKQILIKARKEAVYEELLKK 478
            E GI+ +     +L+Q+L+K  +E V + L +K
Sbjct: 438 IEMGIRPSGATFGRLRQLLLKEDREDVLKFLNEK 471


>gi|357114607|ref|XP_003559090.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Brachypodium distachyon]
          Length = 486

 Score =  192 bits (487), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 132/458 (28%), Positives = 235/458 (51%), Gaps = 11/458 (2%)

Query: 27  ASHLDVPNLPPTIKTLCE-IIANTPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAV 85
            S + V +  P  K LC+ II+   +  +E  LD + +RV+ +  E+VL+   +    A 
Sbjct: 27  GSDVAVDSFDPA-KRLCKLIISCQKASGLELELDHSDLRVTPDVAERVLERLDNAGMLAY 85

Query: 86  KFFRWSAYQLND--KHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFS 143
           +FF W+  Q      H+  +++ VV  L K   +  MWD +  M++E V+++ TF  +  
Sbjct: 86  RFFEWARKQKRGGCNHTIRSYHTVVASLAKIRQYQLMWDVVAIMRREGVVNVETFGIIMR 145

Query: 144 SYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPD 203
            Y  A +  +A+ TF++ME+YG   ++ A NSLL A+C+      A +    ++GR  PD
Sbjct: 146 KYARAQKFDEAVYTFNIMEKYGVVPNLAAFNSLLGALCKSKNVRKAQEIFDKMNGRFNPD 205

Query: 204 NDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVN 263
             TY+ILLEGW K  ++   ++ + EM ++ G  PD V  Y   + +L K    + E V 
Sbjct: 206 AKTYSILLEGWGKAPNLPKMREVYSEM-LDAGCQPDIV-TYGIMVDSLCK-TGRVEEAVL 262

Query: 264 SLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAM-VGRIGFRPDTHMYNMMISL 322
            ++ M  RGC P    + +       G  +R  + +   + + + G  PD  +YN +++ 
Sbjct: 263 VVQDMSSRGCQPTTFIYSVLVHT--YGVEMRIEDAVATFLDMEKDGIVPDVVVYNALVTA 320

Query: 323 YCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLN 382
           +C   +   A +++D+M  +G  P+ +T+NI+   L+   K  EA  +F  M+K     +
Sbjct: 321 FCKVKKFENAFRVMDDMEGHGIAPNSRTWNIILNKLISLGKDDEAYRVFRRMIKRCQP-D 379

Query: 383 HENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAK 442
            +     ++++ ++D+  +A+K WKYM          T ++L+ GLCD   + +A    +
Sbjct: 380 SDTYTMMIKMFCENDNVEMALKVWKYMRLKQFLPSMHTFSVLINGLCDKGEVSQACVLLE 439

Query: 443 GMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKCK 480
            M EKGI+       KL+Q+L+K  ++ V E L+ K K
Sbjct: 440 DMIEKGIRPPGSTFGKLRQLLLKEGRKDVLEFLVDKMK 477


>gi|326520119|dbj|BAK03984.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 485

 Score =  191 bits (486), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 129/446 (28%), Positives = 230/446 (51%), Gaps = 11/446 (2%)

Query: 40  KTLCE-IIANTPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLND- 97
           K LC+ II+   +  +E  LD + +RV+ +  E+VL+   +    A +FF W+  Q    
Sbjct: 37  KRLCKLIISCRQASGLEIELDHSDLRVTPDVAERVLERLDNAGMLAYRFFEWARKQRRGG 96

Query: 98  --KHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAI 155
              H+  +++ VV  L K   +  MWD +  M+++ V+++ TF  +   Y  A +V +A+
Sbjct: 97  GCAHTVRSFHTVVASLAKIRQYQLMWDVVAIMRRQGVVNVETFGIIMRKYARAQKVDEAV 156

Query: 156 TTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWE 215
            TF+VME+YG   ++ A NSLL A+C+      A +    ++GR  PD  TY+ILLEGW 
Sbjct: 157 YTFNVMEKYGVVPNLAAFNSLLCALCKSKNVRKAQEIFEQMNGRFSPDAKTYSILLEGWG 216

Query: 216 KERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNP 275
           +  ++   +K + +M ++ G  PD V  Y   + +L K    + E V  ++ M  RGC P
Sbjct: 217 RAPNLPKMRKVYSDM-LDAGCQPDIV-TYGIMVDSLCK-TGRVEEAVFVVQDMTSRGCQP 273

Query: 276 GMTFFKLAFEECLTGQNLRGAEFIWGAM-VGRIGFRPDTHMYNMMISLYCYSNETGAAMK 334
               + +       G  +R  + +   + + + G  PD  +YN +++ +C   +   A +
Sbjct: 274 TTFIYSVLVHT--YGVEMRIEDAVATFLDMQKDGIVPDVVVYNALVTAFCKVKKFDNAFR 331

Query: 335 LLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYM 394
           ++D+M  +G  P+ +T+NI+   L+   K  EA  +F  M+K     + +     ++++ 
Sbjct: 332 VMDDMEGHGITPNSRTWNIILNKLISLGKDDEAYRVFRRMIKRCQP-DSDTYTMMIKMFC 390

Query: 395 DSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPF 454
           ++D   +A+K WKYM          T ++L+ GLCD   + +A    + M EKGI+    
Sbjct: 391 ENDRLEMALKVWKYMRLKQFLPSMHTFSVLINGLCDKGEVSQACVLLEDMIEKGIRPPGS 450

Query: 455 ALSKLKQILIKARKEAVYEELLKKCK 480
              KL+Q+L+K  ++ V E L+ K K
Sbjct: 451 TFGKLRQLLLKEGRKDVLEFLVDKMK 476


>gi|449465535|ref|XP_004150483.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
           mitochondrial-like [Cucumis sativus]
          Length = 542

 Score =  191 bits (484), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 125/430 (29%), Positives = 216/430 (50%), Gaps = 16/430 (3%)

Query: 42  LCEIIANTPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSP 101
            C++I+  P+  +E +LD   + +S   + +VLK   +    A+ FFRW+  Q   KH+ 
Sbjct: 97  FCKLISKNPNSCIESLLDGAPMELSPALIVEVLKKLSNAGFLALSFFRWAEKQKGFKHTT 156

Query: 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVM 161
            ++NL+++ LGK   F+ +W+ +  MK++ +LS  TFA +   Y  A +VK+A+ +F+ M
Sbjct: 157 ESYNLLIEALGKIKQFNVIWNLVSDMKRKGILSRETFALITRRYARARKVKEAVESFEKM 216

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDV 220
           E++G +  V   N LL  +C+      A + F ++  GR KPD  +Y ILLEGW +++++
Sbjct: 217 EKFGFQMGVSDFNRLLDTLCKSRNVKKAQEVFDKMKHGRFKPDIKSYTILLEGWGQDQNL 276

Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIY--ETVNSLKRMMERGCNPGMT 278
               + + EM  E G++PD V    ++ I +   C      E +     M  +   P   
Sbjct: 277 LKLNEVYREMRDE-GFEPDVV----TFGILINAHCKARKYDEAIRLFHEMEAKNIKPSPH 331

Query: 279 FFKLAFEECLTGQNLRGA-EFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLD 337
            F        + + L+ A EF     +   GF P+   YN ++  YC+S +   A +++D
Sbjct: 332 VFCTLINGLGSEKRLKEALEFFEQLKLS--GFAPEAPTYNAVVGAYCWSMKMAYAYRMVD 389

Query: 338 EMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKN---ENVLNHENCRAAVRVYM 394
           EM  +G  P+ +TY+I+   L+KGRK  EA  +F  M +    E  L+  +    +R++ 
Sbjct: 390 EMRKSGVGPNSRTYDIILHHLIKGRKSKEAYSVFQRMSREPGCEPTLSTYDI--MIRMFC 447

Query: 395 DSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPF 454
           + +   +AI+ W  M            + L+  LC  H L +A  Y + M + GI+    
Sbjct: 448 NEERVDMAIQIWDEMKAKGVLPGMHLFSTLINSLCHEHKLEDACTYFQEMLDVGIRPPAT 507

Query: 455 ALSKLKQILI 464
             S LKQ L+
Sbjct: 508 MFSNLKQALL 517


>gi|449503427|ref|XP_004161997.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g71060, mitochondrial-like [Cucumis sativus]
          Length = 542

 Score =  191 bits (484), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 125/430 (29%), Positives = 216/430 (50%), Gaps = 16/430 (3%)

Query: 42  LCEIIANTPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSP 101
            C++I+  P+  +E +LD   + +S   + +VLK   +    A+ FFRW+  Q   KH+ 
Sbjct: 97  FCKLISKNPNSCIESLLDGAPMELSPALIVEVLKKLSNAGFLALSFFRWAEKQKGFKHTT 156

Query: 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVM 161
            ++NL+++ LGK   F+ +W+ +  MK++ +LS  TFA +   Y  A +VK+A+ +F+ M
Sbjct: 157 ESYNLLIEALGKIKQFNVIWNLVSDMKRKGILSRETFALITRRYARARKVKEAVESFEKM 216

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDV 220
           E++G +  V   N LL  +C+      A + F ++  GR KPD  +Y ILLEGW +++++
Sbjct: 217 EKFGFQMGVSDFNRLLDTLCKSRNVKKAQEVFDKMKHGRFKPDIKSYTILLEGWGQDQNL 276

Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIY--ETVNSLKRMMERGCNPGMT 278
               + + EM  E G++PD V    ++ I +   C      E +     M  +   P   
Sbjct: 277 LKLNEVYREMRDE-GFEPDVV----TFGILINAHCKARKYDEAIRLFHEMEAKNIKPSPH 331

Query: 279 FFKLAFEECLTGQNLRGA-EFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLD 337
            F        + + L+ A EF     +   GF P+   YN ++  YC+S +   A +++D
Sbjct: 332 VFCTLINGLGSEKRLKEALEFFEQLKLS--GFAPEAPTYNAVVGAYCWSMKMAYAYRMVD 389

Query: 338 EMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKN---ENVLNHENCRAAVRVYM 394
           EM  +G  P+ +TY+I+   L+KGRK  EA  +F  M +    E  L+  +    +R++ 
Sbjct: 390 EMRKSGVGPNSRTYDIILHHLIKGRKSKEAYSVFQRMSREPGCEPTLSTYDI--MIRMFC 447

Query: 395 DSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPF 454
           + +   +AI+ W  M            + L+  LC  H L +A  Y + M + GI+    
Sbjct: 448 NEERVDMAIQIWDEMKAKGVLPGMHLFSTLINSLCHEHKLEDACTYFQEMLDVGIRPPAT 507

Query: 455 ALSKLKQILI 464
             S LKQ L+
Sbjct: 508 MFSNLKQALL 517


>gi|115455503|ref|NP_001051352.1| Os03g0761300 [Oryza sativa Japonica Group]
 gi|14488357|gb|AAK63924.1|AC084282_5 unknown protein [Oryza sativa Japonica Group]
 gi|108711214|gb|ABF99009.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113549823|dbj|BAF13266.1| Os03g0761300 [Oryza sativa Japonica Group]
 gi|125545804|gb|EAY91943.1| hypothetical protein OsI_13630 [Oryza sativa Indica Group]
 gi|125588003|gb|EAZ28667.1| hypothetical protein OsJ_12678 [Oryza sativa Japonica Group]
          Length = 484

 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 125/448 (27%), Positives = 227/448 (50%), Gaps = 15/448 (3%)

Query: 37  PTIKTLCEIIANTPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLN 96
           P  +    II+   +  VE  LD + +RV+ +  E+VL+   +    A +FF W+  Q  
Sbjct: 35  PAKRLFKLIISCRKASAVEHELDHSGVRVTPDVAERVLERLDNAGMLAYRFFEWARRQKR 94

Query: 97  D--KHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDA 154
               H+  +++ VV  L K   +  MWD +  M++E  +++ TF  +   Y  A +V +A
Sbjct: 95  GGCAHTVRSYHTVVASLAKIRQYQLMWDVVAVMRREGAVNVETFGIIMRKYARAQKVDEA 154

Query: 155 ITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGW 214
           + TF+VME+YG   ++ A NSLL A+C+      A +    ++ R  PD  TY+ILLEGW
Sbjct: 155 VYTFNVMEKYGVVPNLAAFNSLLGALCKSKNVRKAQEIFDKMNSRFSPDAKTYSILLEGW 214

Query: 215 EKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCN 274
            +  ++   ++ + EM ++ G +PD V  Y   + +L K    + E V  ++ M  RGC 
Sbjct: 215 GRAPNLPKMREVYSEM-LDAGCEPDIV-TYGIMVDSLCK-TGRVEEAVRVVQDMTSRGCQ 271

Query: 275 PGMTFFKLAFEECLTGQNLRGAEFIWGAM-VGRIGFRPDTHMYNMMISLYCYSNETGAAM 333
           P    + +       G  +R  + +   + + + G  PD  +YN ++S +C + +   A 
Sbjct: 272 PTTYIYSVLVHT--YGVEMRIEDAVATFLDMEKDGIVPDIVVYNALVSAFCKAKKFENAF 329

Query: 334 KLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRA---AV 390
           ++L++M  +G   + +T+NI+   L+   +  EA  +F  M+K        +C      +
Sbjct: 330 RVLNDMEGHGITTNSRTWNIILNHLISLGRDDEAYKVFRRMIK----CCQPDCDTYTMMI 385

Query: 391 RVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQ 450
           +++ ++D   +A+K WKYM          T ++L+ GLCD   + +A    + M EKGI+
Sbjct: 386 KMFCENDKVEMALKVWKYMRLKQFLPSMHTFSVLINGLCDKREVSQACVLLEDMIEKGIR 445

Query: 451 VTPFALSKLKQILIKARKEAVYEELLKK 478
                  KL+Q+L+K  ++ V + L++K
Sbjct: 446 PPGSTFGKLRQLLLKEGRKDVLDFLVEK 473


>gi|449463418|ref|XP_004149431.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Cucumis sativus]
 gi|449499065|ref|XP_004160711.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Cucumis sativus]
          Length = 439

 Score =  182 bits (461), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 121/428 (28%), Positives = 215/428 (50%), Gaps = 9/428 (2%)

Query: 53  TVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLG 112
            +E  LD+T IR+S E  E VL+   +    A +FF W++ Q N  HS  A++ +++ L 
Sbjct: 8   ALETALDQTGIRISPEIAEPVLRRFENAGMLAYRFFEWASKQRNYVHSVRAYHSMIESLA 67

Query: 113 KNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFA 172
           K   +  +WD + +M+ + +L++  F  +   Y  A +V++A+ TF+VME+Y  K +V A
Sbjct: 68  KIRQYQMVWDLVNAMRNKEILNVEAFCIIMRKYARAQKVEEAVYTFNVMEKYNMKPNVAA 127

Query: 173 LNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVI 232
            N LLSA+C+      A +    +  +  PD+ TY+IL+EGW +  ++  A++ + EM I
Sbjct: 128 FNGLLSALCKSKNVRKAQEIFDNMKDQFVPDSKTYSILIEGWGRAPNLPKAREIYREM-I 186

Query: 233 EVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQN 292
           + G  PD V    S ++ +L     + E V  +K M    C P    + +          
Sbjct: 187 DSGCIPDEVTY--SIMVDVLCKAGRVDEAVEIVKEMDYNNCKPSSFIYSVLVHTYGVENR 244

Query: 293 LRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYN 352
           +  A   +  M  R G   D   YN +IS +C +N+     ++L +M   G  P+ +T N
Sbjct: 245 IEDAVSTFLEM-ERNGVMADVAAYNALISAFCKANKMKNVYRVLKDMDLKGVNPNSRTCN 303

Query: 353 ILFEFLVKGRKLWEASGLFNEMVK--NENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMI 410
           I+   L+   +  EA  +F  M+K    +V ++      ++++    +  +A+K WKYM 
Sbjct: 304 IIINSLIGRGETDEAFKIFRRMIKVCEPDVDSYT---MIIKMFCGRKELDMALKIWKYMK 360

Query: 411 ENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEA 470
           +        T ++L+ GLC +    +A    + M EKGI+ +     +L+ +LIK  ++ 
Sbjct: 361 KKQFVPSMHTFSVLINGLCQIGNATQACVLLEEMIEKGIRPSGATFGRLRHLLIKEGRKD 420

Query: 471 VYEELLKK 478
           V + L +K
Sbjct: 421 VLKFLQEK 428


>gi|255580475|ref|XP_002531063.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223529358|gb|EEF31324.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 533

 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 138/475 (29%), Positives = 227/475 (47%), Gaps = 36/475 (7%)

Query: 17  PHNKRKRSTFASHLDVPNLPPTI--------KTLCEIIANTPSPTVEDVLDKTLIRVSQE 68
           PH   +RS    H D+   P           + +C +++  P+ ++E +L     +VS  
Sbjct: 58  PHLNFQRSI---HADLEQNPEIFTDKIIEDTRNICRLLSKNPNSSIEKLLLGASFKVSPA 114

Query: 69  TVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMK 128
            V +VLK   +    A+ FF+W+  Q    ++  ++N ++D LGK   F+ +W+ +  MK
Sbjct: 115 LVLEVLKRLSNAGALALSFFKWAEKQKGFMYNTESYNALIDSLGKIKQFNMIWNLVNDMK 174

Query: 129 KENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTID 188
           ++ VL+  TFA +   Y  + +VK+A+ TF+ ME++G K +    N LL  + +  + + 
Sbjct: 175 RKGVLTKETFALISRRYARSGKVKEAMNTFEKMEKFGLKIESTDFNRLLDTLIKSRQVLS 234

Query: 189 AWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSY 247
           A   F ++   R  PD  +Y ILLEGW +E+++    + + EM  E G++PD V    +Y
Sbjct: 235 AQNVFDKMKIRRFVPDIKSYTILLEGWGQEKNLLKLDEVYREMKDE-GFEPDVV----TY 289

Query: 248 LITLLKGCD-GIYETVNSLKRMME-RGCNPGMTFFKLAFEECLTGQNLRGA-EFIWGAMV 304
            I +   C    Y+    L R ME + C P    F        + + L  A EF   +  
Sbjct: 290 GILINAYCKVRKYDDAIELFREMESKNCQPSPHIFCTLINGLGSVRRLSEALEFFRRSKA 349

Query: 305 GRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKL 364
              GF P+T  YN ++  YC+S     A +++DEM  +G  P+ +TY+I+   L+K  K 
Sbjct: 350 S--GFAPETPTYNAVVGAYCWSMRIDDAYRMVDEMRKSGVGPNSRTYDIILHHLIKAEKT 407

Query: 365 WEASGLFNEMVKNENVLNHENCRAA-------VRVYMDSDDPYVAIKFWKYMIENHCSDL 417
            EA  +F +M       + E C          VR++ + D    AIK W  M        
Sbjct: 408 TEAFSVFEKMS------SEEECEPTVSTYDIIVRMFCNMDKVESAIKVWDRMKAKGVHPG 461

Query: 418 SETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIK-ARKEAV 471
               ++L+  LC  + L  A KY + M + GI+      S LKQ LI+  RK+ V
Sbjct: 462 MHMFSILINSLCHENKLDIACKYFQEMLDVGIRPPAALFSHLKQALIEDGRKDTV 516


>gi|297841875|ref|XP_002888819.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297334660|gb|EFH65078.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 512

 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 129/453 (28%), Positives = 218/453 (48%), Gaps = 15/453 (3%)

Query: 24  STFASHLDVPNLPPTIKTLCEIIANTPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGP 83
           S+  + +   ++      +C+I++      VE +L++  +++S   +E+VLK   +    
Sbjct: 53  SSVETQVSANDVSQDADKICKILSKFTDSKVETLLNEASVKLSPALIEEVLKKLSNAGVL 112

Query: 84  AVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFS 143
           A+  F+W+  Q   KH+   +N +++ LGK   F  +W+ +  MK++ +LS  TFA +  
Sbjct: 113 ALSVFKWAENQKGFKHTTSNYNALIESLGKIKQFKLIWNLVDDMKQKKLLSKDTFALISR 172

Query: 144 SYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKP 202
            Y  A +VK+AIT F  ME YG K +    N +L  + +     DA + F ++   R +P
Sbjct: 173 RYARARKVKEAITAFHKMEDYGFKMESSDFNRMLDILSKSRNVGDAQKVFDKMKKKRFEP 232

Query: 203 DNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIY--E 260
           D  +Y ILLEGW +E ++    + +GEM  E G++PD V    +Y I +   C      E
Sbjct: 233 DIKSYTILLEGWGQELNLLRVNEVYGEMKDE-GFEPDVV----AYGIIINAYCKAKKYDE 287

Query: 261 TVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGA-EFIWGAMVGRIGFRPDTHMYNMM 319
            V     M +R C P    F        + + L  A EF   +     GF  +   YN +
Sbjct: 288 AVRFFNEMEQRNCKPSPHIFCSLINGLGSEKKLNDALEFFERSKSS--GFPLEAPTYNAL 345

Query: 320 ISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNEN 379
           +  YC+S     A K +DEM   G  P+ +TY+I+   L++ ++  EA  ++ +M     
Sbjct: 346 VGAYCWSQRMEDAFKTVDEMRSKGIGPNARTYDIILHHLIRMQRTKEAYEVYQKMSCEPT 405

Query: 380 VLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVK 439
           V  +E     VR++ + +   +AIK W  M            + L+  LC  + L EA +
Sbjct: 406 VSTYE---IMVRMFCNKERLDMAIKIWDEMKGKGVLPGMHMFSSLITALCHENKLDEACE 462

Query: 440 YAKGMAEKGIQVTPFALSKLKQILI-KARKEAV 471
           Y   M + GI+      S+LKQ L+ + RK+ V
Sbjct: 463 YFNEMLDVGIRPPGHLFSRLKQTLLDEGRKDKV 495


>gi|357128238|ref|XP_003565781.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
           mitochondrial-like [Brachypodium distachyon]
          Length = 547

 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 123/449 (27%), Positives = 220/449 (48%), Gaps = 26/449 (5%)

Query: 42  LCEIIANTPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGP-AVKFFRWSAYQLNDKHS 100
           +C ++++ P P +   LD   + +S E V +VL+ + S+ G  A+ FFRW+  Q   +++
Sbjct: 102 VCRVVSSQPEPRIASALDALGVNMSPELVAEVLR-NLSNAGILALAFFRWAERQQGFRYT 160

Query: 101 PYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDV 160
             +++ +++ LGK   F  +W  +++M+   +LS  TF  +   Y  A +VK+A+ TF+ 
Sbjct: 161 AESFHNLIEALGKIKQFRLVWSLVEAMRCRGLLSKDTFRLIVRRYARARKVKEAVETFEK 220

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV--DGRIKPDNDTYAILLEGWEKER 218
           M  +G K D+   N L+  + +  +   A    + +  +GR  PD  TY +L+EGW  E+
Sbjct: 221 MSSFGLKADLSDYNWLIDVLSKSKQVKKAHAIFKEMKRNGRFVPDLKTYTVLMEGWGHEK 280

Query: 219 DVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG--CDGIYETVNSLKRMMERGCNPG 276
           D+   K  + EM ++ G  PD V AY + + +  K   CD   E +   + M   GC P 
Sbjct: 281 DLLMLKSVYQEM-LDAGIKPD-VVAYGTLISSFCKSGKCD---EAIKVFREMEANGCMPS 335

Query: 277 MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLL 336
              + +      + + L  A   +  +    GF  +    N ++  YC S++   A K++
Sbjct: 336 PHVYCMLINGLGSEERLDEA-LKYFELSKASGFPMEVPTCNAVVGAYCRSSKFQHAFKMV 394

Query: 337 DEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYM-- 394
           DEM   G  P+ +TY+I+ ++L+K +K+ EA  +F  M         E C   +  Y   
Sbjct: 395 DEMRKTGIGPNARTYDIILQYLIKSQKIEEAYNVFQRM-------GMEGCEPQLNTYTMM 447

Query: 395 -----DSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
                 ++   +A+K WK M E          + L+ GLC  + L EA  Y + M +KGI
Sbjct: 448 VGMFCSNERVDMALKVWKQMKEKGVLPCMHMFSSLINGLCFENRLEEACVYFQEMLDKGI 507

Query: 450 QVTPFALSKLKQILIKARKEAVYEELLKK 478
           +      S LK+ LI+  + ++ +++  K
Sbjct: 508 RPPGQLFSNLKEALIEGGRISLAQDMALK 536


>gi|115436822|ref|NP_001043145.1| Os01g0505500 [Oryza sativa Japonica Group]
 gi|56201654|dbj|BAD73118.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113532676|dbj|BAF05059.1| Os01g0505500 [Oryza sativa Japonica Group]
 gi|125570544|gb|EAZ12059.1| hypothetical protein OsJ_01942 [Oryza sativa Japonica Group]
          Length = 540

 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 124/450 (27%), Positives = 213/450 (47%), Gaps = 10/450 (2%)

Query: 33  PNLPPTIKTLCEIIANTPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSA 92
           P +    + +C +++  P   +  VLD   + VS + V +VLK   +    A+ FFRW+ 
Sbjct: 86  PGVSEAAERVCRVVSAQPEHRIAPVLDALGVTVSPQLVAEVLKNLSNAGILALAFFRWAE 145

Query: 93  YQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVK 152
            Q   ++S   ++ +++ LGK   F  +W  +++M+  + LS  TF  +   Y  A +VK
Sbjct: 146 RQQGFRYSAEGFHNLIEALGKIKQFRLVWSLVEAMRCRSCLSKDTFKIIVRRYARARKVK 205

Query: 153 DAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV--DGRIKPDNDTYAIL 210
           +A+ TF+ M  +G K D+   N L+  + +  +   A    + +   GR  PD  TY +L
Sbjct: 206 EAVETFEKMSSFGLKTDLSDYNWLIDILSKSKQVKKAHAIFKEMKRKGRFIPDLKTYTVL 265

Query: 211 LEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG--CDGIYETVNSLKRM 268
           +EGW  E+D+   K  + EM ++ G  PD V AY   +    K   CD   E +     M
Sbjct: 266 MEGWGHEKDLLMLKAVYQEM-LDAGIKPDVV-AYGMLISAFCKSGKCD---EAIKVFHEM 320

Query: 269 MERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNE 328
            E GC P    + +      + + L  A   +  +    GF  +    N +I  YC + E
Sbjct: 321 EESGCMPSPHVYCMLINGLGSMERLDEA-LKYFQLSKESGFPMEVPTCNAVIGAYCRALE 379

Query: 329 TGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRA 388
              A K++DEM  +G  P+ +TY+I+   L+K  K+ EA  LF  M ++           
Sbjct: 380 FHHAFKMVDEMRKSGIGPNTRTYDIILNHLIKSEKIEEAYNLFQRMERDGCEPELNTYTM 439

Query: 389 AVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448
            V ++  ++   +A+K WK M E          + L+ GLC  + L EA  Y + M +KG
Sbjct: 440 MVGMFCSNERVDMALKVWKQMKEKGVLPCMHMFSALINGLCFENRLEEACVYFQEMLDKG 499

Query: 449 IQVTPFALSKLKQILIKARKEAVYEELLKK 478
           I+      S LK+ L++  +  + +E+ ++
Sbjct: 500 IRPPGQLFSNLKEALVEGGRITLAQEVTQR 529


>gi|125526112|gb|EAY74226.1| hypothetical protein OsI_02107 [Oryza sativa Indica Group]
          Length = 540

 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 124/450 (27%), Positives = 213/450 (47%), Gaps = 10/450 (2%)

Query: 33  PNLPPTIKTLCEIIANTPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSA 92
           P +    + +C +++  P   +  VLD   + VS + V +VLK   +    A+ FFRW+ 
Sbjct: 86  PGVSEAAERVCRVVSAQPEHRIAPVLDALGVTVSPQLVAEVLKNLSNAGILALAFFRWAE 145

Query: 93  YQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVK 152
            Q   ++S   ++ +++ LGK   F  +W  +++M+  + LS  TF  +   Y  A +VK
Sbjct: 146 RQQGFRYSAEGFHNLIEALGKIKQFRLVWSLVEAMRCRSCLSKDTFKIIVRRYARARKVK 205

Query: 153 DAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV--DGRIKPDNDTYAIL 210
           +A+ TF+ M  +G K D+   N L+  + +  +   A    + +   GR  PD  TY +L
Sbjct: 206 EAVETFEKMSSFGLKTDLSDYNWLIDILSKSKQVKKAHAIFKEMKRKGRFIPDLKTYTVL 265

Query: 211 LEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG--CDGIYETVNSLKRM 268
           +EGW  E+D+   K  + EM ++ G  PD V AY   +    K   CD   E +     M
Sbjct: 266 MEGWGHEKDLLMLKAVYQEM-LDAGIKPDVV-AYGMLISAFCKSGKCD---EAIKVFHEM 320

Query: 269 MERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNE 328
            E GC P    + +      + + L  A   +  +    GF  +    N +I  YC + E
Sbjct: 321 EESGCMPSPHVYCMLINGLGSMERLDEA-LKYFQLSKESGFPMEVPTCNAVIGAYCRALE 379

Query: 329 TGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRA 388
              A K++DEM  +G  P+ +TY+I+   L+K  K+ EA  LF  M ++           
Sbjct: 380 FHHAFKMVDEMRKSGIGPNTRTYDIILNHLIKSEKIEEAYNLFQRMERDGCEPELNTYTM 439

Query: 389 AVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448
            V ++  ++   +A+K WK M E          + L+ GLC  + L EA  Y + M +KG
Sbjct: 440 MVGMFCSNERVDMALKVWKQMKEKGVLPCMHMFSALINGLCFDNRLEEACVYFQEMLDKG 499

Query: 449 IQVTPFALSKLKQILIKARKEAVYEELLKK 478
           I+      S LK+ L++  +  + +E+ ++
Sbjct: 500 IRPPGQLFSNLKEALVEGGRITLAQEVTQR 529


>gi|326524964|dbj|BAK04418.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 565

 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 122/441 (27%), Positives = 212/441 (48%), Gaps = 10/441 (2%)

Query: 42  LCEIIANTPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSP 101
           +C +++  P P V   LD     VS + V +VLK   +    A+ FFRW+  Q    ++ 
Sbjct: 120 VCRVLSTLPEPRVPAALDALGASVSPQLVAEVLKNLSNAGILALAFFRWAERQQGFVYTA 179

Query: 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVM 161
            +++ +++ LGK   F  +W  +++M+   +LS  TF  +   Y  A +VK+A+ TF+ M
Sbjct: 180 DSFHNLIEALGKIKQFRLVWSLVEAMRCRGLLSKDTFRLIVRRYARARKVKEAVETFEKM 239

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV--DGRIKPDNDTYAILLEGWEKERD 219
             +G K D+   N L+  + +  +   A    + +  +GR  PD  TY +L+EGW  E+D
Sbjct: 240 AGFGLKADLSDYNWLIDVLSKSKQVKKAHAIFKEMKRNGRFVPDLKTYTVLMEGWGHEKD 299

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG--CDGIYETVNSLKRMMERGCNPGM 277
           +   K  + EM ++ G  PD V AY   + +  K   CD   E +   + M   GC P  
Sbjct: 300 LLMLKSVYQEM-LDAGLQPDVV-AYGMLISSFCKSGKCD---EAIKVFREMETNGCMPSP 354

Query: 278 TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLD 337
             + +      + + L  A   +  +    GF  +    N ++  YC S++   A K++D
Sbjct: 355 HVYCMLINGLGSEERLDEA-LKYFELSKASGFPMEVPTCNAVVGAYCRSSKFQHAFKMVD 413

Query: 338 EMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSD 397
           EM  +G  P+ +TY+I+   L+K +K+ EA  +F  M K+            V ++  ++
Sbjct: 414 EMRKSGIGPNSRTYDIILHHLIKSQKIEEAYNVFQGMSKDGCEPQLNTYTMMVGMFCSNE 473

Query: 398 DPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALS 457
              VA+K W  M E          + L+ GLC  + L EA  Y + M ++GI+      S
Sbjct: 474 RVDVALKVWNQMKEKGVLPCMHMFSALINGLCFENRLEEACAYFQEMLDRGIRPPGQLFS 533

Query: 458 KLKQILIKARKEAVYEELLKK 478
            LK+ LI+  + ++ +E+  K
Sbjct: 534 NLKEALIEGGRISLAQEMALK 554


>gi|356534319|ref|XP_003535704.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
           mitochondrial-like [Glycine max]
          Length = 507

 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 137/472 (29%), Positives = 217/472 (45%), Gaps = 24/472 (5%)

Query: 9   HHDDPSPDPHNKRKRSTFASHLDVPNLPPTIKTLCEIIANTPSPTVEDVLDKTLIRVSQE 68
           HH    P      K  T A H   P   P  + +C I++ TP+ TV+  L     + S E
Sbjct: 33  HHHSNGPS-----KTHTLAFHTAQPRPTPDAEAICRILSTTPASTVDACLAAVPAKPSPE 87

Query: 69  TVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMK 128
            V +VL    +    A+ FFRW+  Q   KH+  A++ +++ LGK   F  +W  +  MK
Sbjct: 88  LVLEVLNKLSNAGVLALSFFRWAEKQSEFKHTTEAFHALIEALGKIRQFKMIWTLVNDMK 147

Query: 129 KENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTID 188
           +  +L+  TF+ V   Y  A + K+AI TF+ ME YG K  V   N L+  +C+     +
Sbjct: 148 QRKLLTSDTFSLVARRYARARKAKEAIKTFEKMEHYGLKPHVSDFNKLVDVLCKSKSVEE 207

Query: 189 AWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSY 247
           A + F ++   R+ PD  +Y ILLEGW +++++    +   EM  + G+  D V    +Y
Sbjct: 208 AHEVFDKMRKLRLDPDIKSYTILLEGWSQQQNLIKVNEVCREME-DKGFQLDVV----AY 262

Query: 248 LITLLKGCDG--IYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGA-EFIWGAMV 304
            I +   C      E +     M  RG  P    +        + + L  A EF   +  
Sbjct: 263 GIIMNAHCKAKKFDEAIGLYHEMKARGVRPSPHVYCTLINGLGSDKRLDEALEFFEVSKA 322

Query: 305 GRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKL 364
              GF P+   YN ++  YC+S     A +++ EM   G  P+ +T++I+   L+KGR++
Sbjct: 323 S--GFVPEAPTYNAVVGAYCWSLRMDDAYRMVGEMKKCGIGPNSRTFDIVLHHLIKGRRI 380

Query: 365 WEASGLFNEMVKNE-----NVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSE 419
            EAS +F  M   E     +V  +E     VR++ + +   +A+  W  M          
Sbjct: 381 EEASSVFRRMNGGEFGCEPSVSTYE---IMVRMFCNEELLDMAVAVWDEMKGKGILPGMH 437

Query: 420 TGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAV 471
             + LV  LC    L EA KY + M + GI+      S LK+ L+ A  E V
Sbjct: 438 MFSTLVCALCHESKLDEACKYFQEMLDVGIRPPAKMFSTLKEALVDAGMEHV 489


>gi|15223927|ref|NP_177262.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169669|sp|Q9C9A2.1|PP112_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g71060, mitochondrial; Flags: Precursor
 gi|12323433|gb|AAG51696.1|AC016972_15 hypothetical protein; 31939-30407 [Arabidopsis thaliana]
 gi|332197036|gb|AEE35157.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 510

 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 126/459 (27%), Positives = 216/459 (47%), Gaps = 15/459 (3%)

Query: 24  STFASHLDVPNLPPTIKTLCEIIANTPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGP 83
           S+  + +   +     + +C+I+       VE +L++  +++S   +E+VLK   +    
Sbjct: 51  SSVETQVSANDASQDAERICKILTKFTDSKVETLLNEASVKLSPALIEEVLKKLSNAGVL 110

Query: 84  AVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFS 143
           A+  F+W+  Q   KH+   +N +++ LGK   F  +W  +  MK + +LS  TFA +  
Sbjct: 111 ALSVFKWAENQKGFKHTTSNYNALIESLGKIKQFKLIWSLVDDMKAKKLLSKETFALISR 170

Query: 144 SYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKP 202
            Y  A +VK+AI  F  ME++G K +    N +L  + +     DA + F ++   R +P
Sbjct: 171 RYARARKVKEAIGAFHKMEEFGFKMESSDFNRMLDTLSKSRNVGDAQKVFDKMKKKRFEP 230

Query: 203 DNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDG--IYE 260
           D  +Y ILLEGW +E ++    +   EM  E G++PD V    +Y I +   C      E
Sbjct: 231 DIKSYTILLEGWGQELNLLRVDEVNREMKDE-GFEPDVV----AYGIIINAHCKAKKYEE 285

Query: 261 TVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGA-EFIWGAMVGRIGFRPDTHMYNMM 319
            +     M +R C P    F        + + L  A EF   +     GF  +   YN +
Sbjct: 286 AIRFFNEMEQRNCKPSPHIFCSLINGLGSEKKLNDALEFFERSKSS--GFPLEAPTYNAL 343

Query: 320 ISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNEN 379
           +  YC+S     A K +DEM   G  P+ +TY+I+   L++ ++  EA  ++  M     
Sbjct: 344 VGAYCWSQRMEDAYKTVDEMRLKGVGPNARTYDIILHHLIRMQRSKEAYEVYQTMSCEPT 403

Query: 380 VLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVK 439
           V  +E     VR++ + +   +AIK W  M            + L+  LC  + L EA +
Sbjct: 404 VSTYE---IMVRMFCNKERLDMAIKIWDEMKGKGVLPGMHMFSSLITALCHENKLDEACE 460

Query: 440 YAKGMAEKGIQVTPFALSKLKQILI-KARKEAVYEELLK 477
           Y   M + GI+      S+LKQ L+ + RK+ V + ++K
Sbjct: 461 YFNEMLDVGIRPPGHMFSRLKQTLLDEGRKDKVTDLVVK 499


>gi|225424178|ref|XP_002280443.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
           mitochondrial [Vitis vinifera]
          Length = 531

 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 124/436 (28%), Positives = 210/436 (48%), Gaps = 18/436 (4%)

Query: 42  LCEIIANTPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSP 101
           LC+++    + ++E +L+   + VS   V +VLK   +    A+ FFRW+  Q   K+S 
Sbjct: 86  LCKLLCTHSNSSIESLLNGASVDVSPTLVLEVLKKLSNSGVIALSFFRWAEKQKGFKYST 145

Query: 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVM 161
             +N +++ LGK   F  +W+ +  M+ + +L+  TFA +   Y  A +VK+A+ TF+ M
Sbjct: 146 ENYNALIEALGKIKQFKMIWNLVNDMRSKGLLTQETFALISRRYARARKVKEAVETFEKM 205

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDV 220
           E++G +  +   N LL A+C+      A + F ++ D + +PD  +Y ILLEGW +E+++
Sbjct: 206 EKFGLQPVLSDFNRLLDALCKSRHVERAQEVFDKMKDRKFRPDIKSYTILLEGWGQEQNL 265

Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDG-IYETVNSLKRMMERG-CNPGMT 278
               + + EM  E G++PD V    +Y I +   C    Y+    L   ME   C P   
Sbjct: 266 LRLDEVYREMKDE-GFEPDAV----TYGILINAHCKARRYDAAVELFHKMEANKCMPTPH 320

Query: 279 FFKLAFEECLTGQNLRGA-EFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLD 337
            +        + + L  A +F   +     GF P+   YN ++  YC S     A +++D
Sbjct: 321 IYCTLINGLGSERRLTEALQFFERSKAS--GFTPEAPTYNAVVGSYCQSMRMDDAYRIVD 378

Query: 338 EMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK----NENVLNHENCRAAVRVY 393
           EM   G  P  +TY+I+   L+K R+  EA  +F  M        +V  +E     VR++
Sbjct: 379 EMRKCGVGPQTRTYDIILHHLIKARRTKEAYRVFQGMSSEPGCEPSVSTYE---IVVRMF 435

Query: 394 MDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTP 453
            + +   +A++ W  M            + L+  LC  + L EA KY   M + GI+   
Sbjct: 436 CNEERVDMALRVWDEMKAKGVLPGMHMFSTLINSLCYENKLDEACKYFHEMLDMGIRPPA 495

Query: 454 FALSKLKQILIKARKE 469
              S LKQ L+   K+
Sbjct: 496 AMFSNLKQTLLDEGKQ 511


>gi|226505250|ref|NP_001147833.1| GTP binding protein [Zea mays]
 gi|195614010|gb|ACG28835.1| GTP binding protein [Zea mays]
 gi|413952711|gb|AFW85360.1| GTP binding protein [Zea mays]
          Length = 547

 Score =  165 bits (417), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 122/451 (27%), Positives = 209/451 (46%), Gaps = 20/451 (4%)

Query: 40  KTLCEIIANTPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKH 99
           K +C I++  P P +   LD   + VS E V +VLK   +    A+ FFRW+  Q    +
Sbjct: 100 KMVCRIVSTQPEPKIASTLDALGVAVSPELVAEVLKNLSNAGMLALAFFRWAERQEGFSY 159

Query: 100 SPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFD 159
           +   ++ +++ LGK   F  +W  +++M+   +LS  TF  +   Y  A +VK+A+ TF+
Sbjct: 160 TAEGFHNLIEALGKIKQFRLVWSLVETMRCRGLLSKDTFKLIVRRYARARKVKEAVETFE 219

Query: 160 VMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV--DGRIKPDNDTYAILLEGWEKE 217
            M  +G K ++   N L+  + +  +   A    + +   G+  PD  TY +L+EGW  E
Sbjct: 220 KMSIFGLKTELSDYNWLIDTLSKSKQVKKAQAIYKEMKRKGKFVPDLKTYTVLMEGWGHE 279

Query: 218 RDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG--CDGIYETVNSLKRMMERGCNP 275
           +D+   K  + EM I+ G  PD V AY   +    K   CD   E +     M   GC P
Sbjct: 280 KDLLMVKTMYQEM-IDAGIRPDVV-AYGMLISAFCKSGKCD---EAIKVFYEMEASGCMP 334

Query: 276 GMTFFKLAFEECLTGQNLRGAEFIWGAM-----VGRIGFRPDTHMYNMMISLYCYSNETG 330
               +      C+    L   E +  A+       + GF  +    N ++  YC +++  
Sbjct: 335 SPHVY------CMLINGLGSEERLDEALKYFEHYKKSGFPMEVPTCNAVVGAYCRASKFQ 388

Query: 331 AAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAV 390
            A K++DEM      P+ +TY+++  +L+K +K  EA  +F  M  +            V
Sbjct: 389 HAFKMVDEMRKCKVGPNSRTYDVILHYLIKSQKFEEAYNIFQRMGIDGCEPQLNTYTMMV 448

Query: 391 RVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQ 450
            ++  +    +A+K WK M E          + L+ GLC  + L EA  Y + M +KGI+
Sbjct: 449 GMFCSNGRVDMALKVWKQMGEKGVLPCMHMFSALINGLCFENRLEEACVYFQEMLDKGIR 508

Query: 451 VTPFALSKLKQILIKARKEAVYEELLKKCKA 481
                 S LK+ L++  + ++ +E+  K  A
Sbjct: 509 PPGQLFSNLKEALVQGGRISLAQEVALKLDA 539


>gi|42565430|gb|AAS20986.1| pentatricopeptide repeat protein-like protein [Hyacinthus
           orientalis]
          Length = 236

 Score =  164 bits (416), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 81/191 (42%), Positives = 119/191 (62%), Gaps = 1/191 (0%)

Query: 208 AILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKR 267
           AILL GWEK  +V  AK TFGEMV+ VGW+P N+ AYD++L TL++      E +N L+ 
Sbjct: 1   AILLAGWEKAGNVQRAKTTFGEMVVRVGWNPSNMSAYDAFLTTLVRAGQPA-EAINFLRV 59

Query: 268 MMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSN 327
           M  + C+PG+ FF  A +  +   + R A  +W  MV   G  PDT MYN +I+L C + 
Sbjct: 60  MKSKNCHPGIKFFSTALDILVKNNDARHAVALWDLMVTDSGLVPDTVMYNAIIALSCNNL 119

Query: 328 ETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCR 387
           +  +A + LD M ++GAFPD  TYN +FE L++GR+  +A   F EM +NE   +  NC 
Sbjct: 120 DFDSAYRFLDAMPFHGAFPDPITYNTIFECLMRGRRANDAGKFFAEMRRNEQRPSPSNCL 179

Query: 388 AAVRVYMDSDD 398
           AA++++++  D
Sbjct: 180 AAIKLFLEEFD 190


>gi|357442157|ref|XP_003591356.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480404|gb|AES61607.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 518

 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 126/478 (26%), Positives = 224/478 (46%), Gaps = 22/478 (4%)

Query: 8   RHHDDPSPDPHNKRKRSTFASHLDVPNLPPTIKTLCEIIANTPSP-TVEDVLDKTLIRVS 66
           RH+   SP     R+ STF  + DV         +  I+  T SP T++  L  T I +S
Sbjct: 4   RHYTSKSPFTSILRRLSTFNPNDDV-------HKVYTILTTTSSPETLKQSLKSTQIFLS 56

Query: 67  QETVEQVLK---FSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDA 123
            E ++QVLK   F +++P   ++FFR++  +    H+ Y+ + ++ +LG++ +FD +W+ 
Sbjct: 57  NELIDQVLKRVRFGHANPNQTLEFFRYTGRRKGFYHTAYSLDTMLYILGRSRMFDHVWEL 116

Query: 124 IKSMKK--ENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAIC 181
           +   ++  +NV++  T   V         V+  + TF   ++    + V   N+LL  +C
Sbjct: 117 LIEARRKDQNVITPRTVMVVLGRVAKVCSVRQTVETFRKFKKIVPDYGVNCFNALLRTLC 176

Query: 182 RDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNV 241
           ++    DA      +    +P+  T+ ILL GW   ++V +A+    EM  E+G +PD V
Sbjct: 177 QEKSMTDARNVYHSLKHNFRPNLQTFNILLSGW---KNVEDAELFVNEMK-EMGVEPD-V 231

Query: 242 PAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPG-MTFFKLAFEECLTGQNLRGAEFIW 300
             Y+S +    KG + I +       M E+  +P  +T+  +     L GQ  +  + + 
Sbjct: 232 VTYNSLVDVYCKGRE-IEKAYKVFDEMREKDLSPDVITYTSVIGGLGLVGQPDKARDVL- 289

Query: 301 GAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVK 360
              +   G  PD   YN  I  YC +   G A +L+DEMV  G  P+  TYN+ F     
Sbjct: 290 -KEMKEYGVYPDVPAYNAAIRNYCIAKRLGIAFELVDEMVNKGLSPNATTYNLFFRVFYW 348

Query: 361 GRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSET 420
              L  +  L+  M+    +   ++C   +R++   +   +A++ W  M+E      +  
Sbjct: 349 SNDLQSSWNLYKRMMGEGCLPYTQSCMFLIRLFKRHEKMEMALQLWGEMVEKGFGSYTLV 408

Query: 421 GNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKK 478
            ++L   LCDM  L EA K    M EKG + +  +  ++K ++  A K    + L +K
Sbjct: 409 SDVLFDMLCDMGKLMEAEKCFLEMIEKGQRPSNVSFKRIKVLMELANKHEAIQNLTQK 466


>gi|357444525|ref|XP_003592540.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355481588|gb|AES62791.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 507

 Score =  162 bits (409), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 126/482 (26%), Positives = 220/482 (45%), Gaps = 19/482 (3%)

Query: 9   HHDDPS----PDPHNKRKRSTFASHLDVPNLP--PTIKTLCEIIANTPSPTVEDVLDKTL 62
           H + P+     +P    K   F  H  + + P  P  +T+C I++ TP   V+  L    
Sbjct: 22  HFESPTVQFIQNPSRSLKFHIFPFHTSLLHKPNNPHAETICRILSTTPESPVDVSLRNFP 81

Query: 63  IRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWD 122
           + VS E V  VL    +    A+ FFRW+  Q    H+   ++ +++ LGK   F  +W+
Sbjct: 82  VEVSPELVVAVLNKLSNAGILALSFFRWAEKQQGFNHNTEIFHALIEALGKIRQFKMIWN 141

Query: 123 AIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICR 182
            +  MK+  +L+  TF+ +   YV A  +K+A+ TF+ ME+YG K  +   N L+  +C+
Sbjct: 142 LVDEMKQRKLLNGDTFSLIARRYVRAKVIKEALKTFERMEKYGLKPQISDFNKLIDVLCK 201

Query: 183 DGKTIDAWQ--FLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDN 240
               ++  Q  F ++    ++P+  +Y IL+EGW +++++    +   EM  + G+ PD 
Sbjct: 202 SKFHVEKAQELFDKMRQWNLEPNLKSYTILIEGWSQQQNLLKVDEVCREMK-DDGFQPDV 260

Query: 241 VPAYDSYLITLLKGCDGIY--ETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGA-E 297
           V    +Y I +   C      E +     M+ +  NP    +         G  +  A E
Sbjct: 261 V----TYGIIINAYCKAKKYDEAIGIYHDMLSKNVNPSPHIYCTFITGLGNGSRMDEAFE 316

Query: 298 FIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEF 357
           F   +     GF P+   YN ++S YC+S     A +++ EM   G  P+ +TY+I+   
Sbjct: 317 FFEKSKAS--GFPPEAPTYNAVVSAYCWSMRIDDAYRIVGEMKELGIGPNARTYDIILVH 374

Query: 358 LVKGRKLWEASGLFNEMVKNENVLNHENCRA-AVRVYMDSDDPYVAIKFWKYMIENHCSD 416
           L+KG +  EA  +F  M          +  A  VR++ + +   +A+  W  M +     
Sbjct: 375 LIKGGRTKEAYSVFQRMSSETGCEPSVSTYAIMVRMFCNENQLDMAMVVWNEMKDKGILP 434

Query: 417 LSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELL 476
                + L+  LC  + L +A +Y + M + GI+ T    S  K+ L+ A  E       
Sbjct: 435 GIHMFSTLIISLCHENKLDDACRYFQQMLDVGIRPTANMFSAFKRALMAAGMENTVIHFA 494

Query: 477 KK 478
           KK
Sbjct: 495 KK 496


>gi|242092396|ref|XP_002436688.1| hypothetical protein SORBIDRAFT_10g007070 [Sorghum bicolor]
 gi|241914911|gb|EER88055.1| hypothetical protein SORBIDRAFT_10g007070 [Sorghum bicolor]
          Length = 551

 Score =  162 bits (409), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 118/446 (26%), Positives = 207/446 (46%), Gaps = 10/446 (2%)

Query: 40  KTLCEIIANTPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKH 99
           K +C I++  P P +   LD   + +S E V +VLK   +    A+ FFRW+  Q    +
Sbjct: 104 KMVCRIVSTQPEPRIASTLDALGVAMSPELVAEVLKNLSNAGMLALAFFRWAERQEGFSY 163

Query: 100 SPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFD 159
           +   ++ +++ LGK   F  +W  +++M+   +LS  TF  +   Y  A +VK+A+ TF+
Sbjct: 164 TAEGFHNLIEALGKIKQFKLVWSLVETMRCRGLLSKDTFKLIVRRYARARKVKEAVETFE 223

Query: 160 VMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV--DGRIKPDNDTYAILLEGWEKE 217
            M  +G K ++   N L+  + +  +   A    + +   G+  PD  TY +L+EGW  E
Sbjct: 224 KMSIFGLKTELSDYNWLIDTLSKSKQVKKAQAIYKEMKRKGKFVPDLKTYTVLMEGWGHE 283

Query: 218 RDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG--CDGIYETVNSLKRMMERGCNP 275
           +D+   K  + EM I+ G  PD V AY   +    K   CD   E +     M   GC P
Sbjct: 284 KDLLMVKTMYQEM-IDAGIRPD-VVAYGMLISAFCKSGKCD---EAIKVFYEMEASGCMP 338

Query: 276 GMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKL 335
               + +      + + L  A   +     + GF  +    N ++  YC +++   A K+
Sbjct: 339 SPHVYCMLINGLGSEERLDEA-LKYFEQYKKSGFPMEVPTCNAVVGAYCRASKFEHAFKM 397

Query: 336 LDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMD 395
           +DEM      P+ +TY+++  +L+K +K  EA  +F  M  +            V ++  
Sbjct: 398 VDEMRECKIGPNSRTYDVILHYLIKSQKFEEAYNVFQRMGMDGCEPQLNTYTMMVGMFCS 457

Query: 396 SDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFA 455
           +    +A+  WK M E          + L+ GLC  + L EA  Y + M +KGI+     
Sbjct: 458 NGRVDMALNVWKQMGERGVLPCMHMFSALINGLCFENRLEEACVYFQEMLDKGIRPPGQL 517

Query: 456 LSKLKQILIKARKEAVYEELLKKCKA 481
            S LK+ L++  + ++ +E+  K  A
Sbjct: 518 FSNLKEALVEGGRISLAQEMASKLDA 543


>gi|255565671|ref|XP_002523825.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223536913|gb|EEF38551.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 528

 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 129/440 (29%), Positives = 208/440 (47%), Gaps = 14/440 (3%)

Query: 46  IANTPSPTVE-DVLDKTLIRVSQETVEQVLK--FSYSHPGP---AVKFFRWSAYQLNDKH 99
           + NTPS ++  D    +   VS   V  V++   +  H  P   A+ FF W+  +    H
Sbjct: 81  LPNTPSHSLSLDFSHFSTSPVSPSLVSHVIEKCAAVRHGIPFFQALSFFNWATSRPGFTH 140

Query: 100 SPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASVFSSYVVADRVKDAITTF 158
            P  +N ++DL GK   FD  W  I  MK  NV +S+ TF+ +   YV A    +A+  F
Sbjct: 141 HPEPYNEMIDLAGKVRNFDLGWQVIDLMKARNVEISIETFSILIRRYVRAGLASEAVHAF 200

Query: 159 DVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKER 218
           + ME Y CK D  A + L+S +CR  +  +A  F   +  + +PD   Y  L+ GW +  
Sbjct: 201 NRMEDYNCKPDKIAFSILISILCRKRRATEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAG 260

Query: 219 DVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNP-GM 277
           ++  A++ F EM +  G  P NV  Y + +I  L  C  I    +    M++ GC P  +
Sbjct: 261 NIPEAERVFTEMKV-AGCMP-NVYTY-TIVIDALCRCGQITRAHDVFAEMLDVGCEPNSI 317

Query: 278 TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLD 337
           TF  L       G+  +  + ++  M  R+G  PDT  YN +I  +C       A+K+L+
Sbjct: 318 TFNNLLRVHVKAGRTEKVLQ-VYNQM-KRMGCPPDTVTYNFLIESHCKDGNLDEALKVLN 375

Query: 338 EMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSD 397
            MV  G  P+  T+N LF  + K R +  A  L+ +M + +   N       +R+++D+ 
Sbjct: 376 SMVKKGCSPNASTFNGLFGSIAKLRDVNGAHRLYAKMKELKCKANTVTYNILMRMFVDTK 435

Query: 398 DPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMA-EKGIQVTPFAL 456
              + +K  K M E+       T  +L+A  C M     A K+ + M  EK ++ +    
Sbjct: 436 STDMVLKLKKEMDEDDVEPNVNTYCVLIAMYCGMGHWNNAYKFFREMVEEKCLKPSLPVY 495

Query: 457 SKLKQILIKARKEAVYEELL 476
            K+ Q L KA +   +EEL+
Sbjct: 496 EKVLQQLRKAGQLKKHEELV 515


>gi|449454008|ref|XP_004144748.1| PREDICTED: pentatricopeptide repeat-containing protein At3g62470,
           mitochondrial-like [Cucumis sativus]
 gi|449490811|ref|XP_004158714.1| PREDICTED: pentatricopeptide repeat-containing protein At3g62470,
           mitochondrial-like [Cucumis sativus]
          Length = 621

 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 109/427 (25%), Positives = 199/427 (46%), Gaps = 4/427 (0%)

Query: 54  VEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGK 113
           +E VLD+  +++S + V +VL        PA +FF W+A +    H    +N ++ +LGK
Sbjct: 162 MEAVLDECGVKLSHDLVLEVLARFKQARKPAFRFFCWAAQKPGFAHDSKTYNTMMTILGK 221

Query: 114 NCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFAL 173
              F+ M   ++ M ++ +L++ TF   F ++  A   K A+   ++M++Y  K  V  +
Sbjct: 222 TRQFETMVSLLEEMAEKELLTMETFTVCFKAFAAAKERKKAVGVLELMKKYKYKVGVETI 281

Query: 174 NSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIE 233
           N LL ++ R     +A      + GR  P+  TY +LL GW + R++  A K + +M+ E
Sbjct: 282 NCLLDSLGRAKLGKEALTIFEKLHGRFTPNLQTYTVLLNGWCRVRNLMEAGKIWNQMIDE 341

Query: 234 VGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNL 293
             + PD V A+++ L  LL+ C    + +   + M  +G +P +  + +   +      +
Sbjct: 342 -DFKPDIV-AHNTMLEGLLR-CKKRSDAIKLFEVMKAKGPSPDVKSYTILVRDFCKQAKM 398

Query: 294 RGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNI 353
           + A   +  M G  G RPD  +Y  +I+ +           LL EM  NG  PD +TYN 
Sbjct: 399 KEAVQYFEEMQG-AGCRPDAAIYTCLITGFGNQKRMDTVYGLLKEMKANGCPPDGKTYNA 457

Query: 354 LFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENH 413
           L + +   R   +A  ++ +M++N            ++ Y  + +  + +  W  M    
Sbjct: 458 LIKLMTNKRMPDDAVRIYKKMIENGIKPTTHTYSMMMKSYFQTRNYEMGVAAWDEMKLKG 517

Query: 414 CSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYE 473
           C     +  + + GL  +    EA KY + M EKG++      +K      +A +  + E
Sbjct: 518 CCPDDNSYTVFIGGLISLGRCAEAGKYLEEMIEKGMKAPQLDYNKFAADFSRAGRPDILE 577

Query: 474 ELLKKCK 480
           EL +K K
Sbjct: 578 ELAQKMK 584


>gi|242064594|ref|XP_002453586.1| hypothetical protein SORBIDRAFT_04g008535 [Sorghum bicolor]
 gi|241933417|gb|EES06562.1| hypothetical protein SORBIDRAFT_04g008535 [Sorghum bicolor]
          Length = 277

 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 96/245 (39%), Positives = 126/245 (51%), Gaps = 13/245 (5%)

Query: 65  VSQETVEQVLKFSYSHPGPAVKFFRWSAYQL--NDKHSPYAWNLVVDLLGKNCLFDAMWD 122
           V+   VEQVL+ SY+HP  A  FF  + +    +D HSPY+WNLV+D+LG N +F  MW+
Sbjct: 20  VTTTNVEQVLRLSYAHPCAAAAFFHLAGHWHLGHDNHSPYSWNLVIDILGTNRIFTRMWE 79

Query: 123 AIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICR 182
            + SM    +LSL TFASVFSS   +          D M  Y    D   LNSLLSA+CR
Sbjct: 80  TVDSMHSRWLLSLDTFASVFSSLAASPSCSMLKAFMDDMPHYDMACDTTTLNSLLSALCR 139

Query: 183 DGKTIDAWQFLRVVDGRIK--PDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDN 240
             +  DA   + V    +   PD D+YAILLE              F EMV ++G DPDN
Sbjct: 140 ANRLDDARAVILVARAEVGTLPDADSYAILLECARLP-----PTHVFDEMVRDIGGDPDN 194

Query: 241 VPAYDSYLITLLKG--CDGIYETVNSLKRMMERGCNP--GMTFFKLAFEECLTGQNLRGA 296
           VPAYD++L T++       + +    L  +    C P  G  FF  A    L    LRGA
Sbjct: 195 VPAYDAFLTTIVSSNYSMALPKATYYLDFLKRHDCLPGTGQRFFHAALVVHLEAGELRGA 254

Query: 297 EFIWG 301
            ++ G
Sbjct: 255 TYLSG 259


>gi|224085950|ref|XP_002307751.1| predicted protein [Populus trichocarpa]
 gi|222857200|gb|EEE94747.1| predicted protein [Populus trichocarpa]
          Length = 480

 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 117/418 (27%), Positives = 195/418 (46%), Gaps = 9/418 (2%)

Query: 65  VSQETVEQVLKFSYSHPGPAV-KFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDA 123
           + +  + Q     +  P P V  FF W++ Q   + SP A+N +VD  G+  +FD  W  
Sbjct: 57  IVRHVIAQSSAVRHGIPVPQVLAFFNWASNQDGFRKSPEAYNEMVDFSGQVMMFDVAWYF 116

Query: 124 IKSMKKENV-LSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICR 182
           I  MK  NV +++ TF  +   YV A    +AI  F+ ME Y CK D  A + L+S +CR
Sbjct: 117 IDLMKARNVDVTVETFLILMRRYVRAGLAAEAIHAFNRMEDYNCKPDKIAFSILISILCR 176

Query: 183 DGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVP 242
           + +   A +F   +  + +PD   Y  L+ GW +  +++ A++ FGEM +  G  P NV 
Sbjct: 177 ERRASQAQEFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFGEMKV-AGIKP-NVY 234

Query: 243 AYDSYLITLLKGCDGIYETVNSLKRMMERGCNP-GMTFFKLAFEECLTGQNLRGAEFIWG 301
            Y S +I  L  C  I    +    M++ GC P  +T+  L       G+  +  + ++ 
Sbjct: 235 TY-SIVIDSLCRCGQITRAHDIFAEMLDAGCQPNSITYNSLMRIHVKAGRTEKVLQ-VYN 292

Query: 302 AMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKG 361
            M  R+G  PDT  YN +I  +C       A+K++  M   G  P+  T+N LF  + K 
Sbjct: 293 QM-KRLGCEPDTVTYNFLIETHCKDENLEDAIKVIGLMAKKGCAPNASTFNTLFGCIAKL 351

Query: 362 RKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETG 421
             +  A  ++ +M +     N       +++++ S    + +K    M EN       T 
Sbjct: 352 GDVNAAHRMYKKMKELNCEANTVTYNTLMKMFVASKSTDMVLKLKTEMDENKIEPNVNTY 411

Query: 422 NLLVAGLCDMHMLPEAVKYAKGMA-EKGIQVTPFALSKLKQILIKARKEAVYEELLKK 478
            +L+   C M     A K+ + M  EK ++ +      + Q L KA +   +EEL++K
Sbjct: 412 KVLITMYCGMGHWNNAYKFFREMIDEKCLRPSLPVYDMVLQQLRKAGQLKKHEELVEK 469


>gi|227463004|gb|ACP39954.1| pentatricopeptide repeat protein [Gossypium hirsutum]
 gi|227463006|gb|ACP39955.1| pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 547

 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 120/434 (27%), Positives = 199/434 (45%), Gaps = 24/434 (5%)

Query: 42  LCEIIANTPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSP 101
           +C +++       + +L+   I+VS   V +VLK   +    A+ FF W+  Q   K++ 
Sbjct: 98  ICTLLSTHSGSHADKLLEDASIKVSPSLVVEVLKRLSNAGVIALSFFTWAEKQKGFKYNT 157

Query: 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVM 161
            ++N +++ LGK   F  +   +  MK   +L+  TFA +   +  A +V++AI  F+ M
Sbjct: 158 ESYNALIEALGKIKQFKLIRSLVNEMKSRKLLNKDTFALISRRHARARKVEEAIEAFERM 217

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDV 220
           E++G K +    N LL  +C+      A + F ++   R  PD  +Y ILLEGW KE ++
Sbjct: 218 EEFGFKLETSDFNRLLDTLCKSRHVEKANKVFDKMKKRRFVPDIKSYTILLEGWGKEHNL 277

Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDG-IYETVNSLKRMME-RGCNPGMT 278
               + + EM  + G++PD V    +Y I +   C    Y+    L   ME + C P   
Sbjct: 278 LRLDEVYLEMKYD-GFEPDVV----TYGILISAYCKAKKYDAAIELFHEMEAKNCKPTPH 332

Query: 279 FFKLAFEECLTGQNLRGA-EFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLD 337
            +        + + L  A EF         GF P+   YN ++  YC+S     A +++D
Sbjct: 333 VYCTLINGLGSEKRLSEALEFF--ERFKSCGFTPEAPTYNSLVGAYCWSMRIDDAFQVID 390

Query: 338 EMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAA-------V 390
           EM  + A P+ +TY+I+   L+K R+  EA   F +M       N   C          V
Sbjct: 391 EMRKHSAGPNSRTYDIILHHLIKARRTNEAYFRFQKMS------NEPGCEPTVSTYEIIV 444

Query: 391 RVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQ 450
           R++ + D   +A + W  M            + L+  LC  + L EA KY + M + GI+
Sbjct: 445 RMFCNEDRVDLAKQVWDQMKAKGVLPGMHMYSDLITSLCHKNKLGEACKYFQEMLDAGIR 504

Query: 451 VTPFALSKLKQILI 464
                 S LKQ L+
Sbjct: 505 PPAKMFSNLKQALL 518



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/243 (23%), Positives = 100/243 (41%), Gaps = 4/243 (1%)

Query: 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL- 193
           + T+  + S+Y  A +   AI  F  ME   CK       +L++ +  + +  +A +F  
Sbjct: 296 VVTYGILISAYCKAKKYDAAIELFHEMEAKNCKPTPHVYCTLINGLGSEKRLSEALEFFE 355

Query: 194 RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLK 253
           R       P+  TY  L+  +     + +A +   EM         N   YD  L  L+K
Sbjct: 356 RFKSCGFTPEAPTYNSLVGAYCWSMRIDDAFQVIDEMRKHSAGP--NSRTYDIILHHLIK 413

Query: 254 GCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDT 313
                       K   E GC P ++ +++          +  A+ +W  M  + G  P  
Sbjct: 414 ARRTNEAYFRFQKMSNEPGCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKAK-GVLPGM 472

Query: 314 HMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNE 373
           HMY+ +I+  C+ N+ G A K   EM+  G  P  + ++ L + L+   K  EA  L  +
Sbjct: 473 HMYSDLITSLCHKNKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKNDEALNLARK 532

Query: 374 MVK 376
           + K
Sbjct: 533 INK 535


>gi|225432738|ref|XP_002279088.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
           mitochondrial [Vitis vinifera]
          Length = 535

 Score =  151 bits (381), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 115/389 (29%), Positives = 183/389 (47%), Gaps = 7/389 (1%)

Query: 63  IRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWD 122
           + VS+  VEQVLK   +   PA  FF+W+  Q   +HS  ++N +VD+LGK   FD MW+
Sbjct: 115 VSVSESLVEQVLKRFSNDWIPAFGFFKWAKAQTGYRHSMNSYNSMVDILGKLKKFDLMWE 174

Query: 123 AIKSMKK-ENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAIC 181
            ++ M +    +SLAT   V      A R KDAI  F  ME++G K D  A+N+L+ A+ 
Sbjct: 175 LVEEMDRLGGYVSLATMTKVMRRLARASRWKDAIEAFRGMERFGVKKDTLAMNTLMDALV 234

Query: 182 RDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNV 241
           ++     A          I  +  T+ +L+ GW K R + NA K+  EM  E G+ PD V
Sbjct: 235 KENSVEHANDVFVEFKDSILLNPHTFNVLIHGWCKARKMDNALKSMAEMK-EHGFCPD-V 292

Query: 242 PAYDSYLITLLKGCDGIYETVNS-LKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIW 300
            +Y S +    +  D  +  VNS L  M E+GC P +  + +       G+ +  A  ++
Sbjct: 293 ISYTSIVEAYCREKD--FRKVNSVLNEMEEKGCPPNVVTYTIVMHALGKGKEISKALEVY 350

Query: 301 GAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVK 360
             M G     PDT  Y+ +I +   +     A  + ++M   GA PD+ TYN +      
Sbjct: 351 EKMKGS-SCVPDTSFYSSLIYILSKAGRLKDARDVFEDMTKQGAIPDVLTYNTMISAACM 409

Query: 361 GRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSET 420
             +  +A  L  +M ++    +       +++   ++   V      +M +N  S    T
Sbjct: 410 HSQEEDALKLLLKMEESSCKPDLNTYSPLLKMCCRNNRMKVLSALLNHMFKNDISLEVGT 469

Query: 421 GNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
            +LLV GLC    L  A  + + M  KG+
Sbjct: 470 YSLLVHGLCKSGKLEHACLFFEEMVSKGL 498



 Score = 43.5 bits (101), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 48/255 (18%), Positives = 103/255 (40%), Gaps = 18/255 (7%)

Query: 100 SPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTF 158
           +P+ +N+++    K    D    ++  MK+      + ++ S+  +Y      +   +  
Sbjct: 256 NPHTFNVLIHGWCKARKMDNALKSMAEMKEHGFCPDVISYTSIVEAYCREKDFRKVNSVL 315

Query: 159 DVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKE 217
           + ME+ GC  +V     ++ A+ +  +   A +    + G    PD   Y+ L+    K 
Sbjct: 316 NEMEEKGCPPNVVTYTIVMHALGKGKEISKALEVYEKMKGSSCVPDTSFYSSLIYILSKA 375

Query: 218 RDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYE--TVNSLKRMMERGCNP 275
             + +A+  F +M  + G  PD +    +Y   +   C    E   +  L +M E  C P
Sbjct: 376 GRLKDARDVFEDMTKQ-GAIPDVL----TYNTMISAACMHSQEEDALKLLLKMEESSCKP 430

Query: 276 GMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHM----YNMMISLYCYSNETGA 331
            +  +    + C     ++    +  A++  + F+ D  +    Y++++   C S +   
Sbjct: 431 DLNTYSPLLKMCCRNNRMK----VLSALLNHM-FKNDISLEVGTYSLLVHGLCKSGKLEH 485

Query: 332 AMKLLDEMVYNGAFP 346
           A    +EMV  G  P
Sbjct: 486 ACLFFEEMVSKGLVP 500


>gi|18394846|ref|NP_564110.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174883|sp|Q9LN22.1|PPR54_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g20300, mitochondrial; Flags: Precursor
 gi|9558596|gb|AAF88159.1|AC026234_10 Contains similarity to a hypothetical protein T3P18.15 gi|5454201
           from Arabidopsis thaliana BAC T3P18 gb|AC005698 and
           contains multiple PPR PF|01535 repeats [Arabidopsis
           thaliana]
 gi|17386104|gb|AAL38598.1|AF446865_1 At1g20300/F14O10_8 [Arabidopsis thaliana]
 gi|15450347|gb|AAK96467.1| At1g20300/F14O10_8 [Arabidopsis thaliana]
 gi|332191838|gb|AEE29959.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 537

 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 115/401 (28%), Positives = 194/401 (48%), Gaps = 13/401 (3%)

Query: 84  AVKFFRWSAYQLN-DKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASV 141
           ++ FF W+  + + D  SP+ +N ++DL GK   FD  W  I  MK  NV +S+ TF  +
Sbjct: 133 SLAFFNWATSRDDYDHKSPHPYNEMIDLSGKVRQFDLAWHLIDLMKSRNVEISIETFTIL 192

Query: 142 FSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIK 201
              YV A    +A+  F+ ME YGC  D  A + ++S + R  +  +A  F   +  R +
Sbjct: 193 IRRYVRAGLASEAVHCFNRMEDYGCVPDKIAFSIVISNLSRKRRASEAQSFFDSLKDRFE 252

Query: 202 PDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYET 261
           PD   Y  L+ GW +  +++ A+K F EM +  G +P NV  Y S +I  L  C  I   
Sbjct: 253 PDVIVYTNLVRGWCRAGEISEAEKVFKEMKL-AGIEP-NVYTY-SIVIDALCRCGQISRA 309

Query: 262 VNSLKRMMERGCNP-GMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMI 320
            +    M++ GC P  +TF  L       G+  +  + ++  M  ++G  PDT  YN +I
Sbjct: 310 HDVFADMLDSGCAPNAITFNNLMRVHVKAGRTEKVLQ-VYNQM-KKLGCEPDTITYNFLI 367

Query: 321 SLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENV 380
             +C       A+K+L+ M+      +  T+N +F ++ K R +  A  ++++M++ +  
Sbjct: 368 EAHCRDENLENAVKVLNTMIKKKCEVNASTFNTIFRYIEKKRDVNGAHRMYSKMMEAKCE 427

Query: 381 LNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKY 440
            N       +R+++ S    + +K  K M +        T  LLV   C M     A K 
Sbjct: 428 PNTVTYNILMRMFVGSKSTDMVLKMKKEMDDKEVEPNVNTYRLLVTMFCGMGHWNNAYKL 487

Query: 441 AKGMAEKGIQVTPFALSKLKQILIKARKEAV---YEELLKK 478
            K M E+   +TP +LS  + +L + R+      +EEL++K
Sbjct: 488 FKEMVEEKC-LTP-SLSLYEMVLAQLRRAGQLKKHEELVEK 526


>gi|297844992|ref|XP_002890377.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336219|gb|EFH66636.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 537

 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 121/426 (28%), Positives = 204/426 (47%), Gaps = 18/426 (4%)

Query: 64  RVSQETVEQVLK--FSYSHPGP---AVKFFRWSAYQLN-DKHSPYAWNLVVDLLGKNCLF 117
           R+S   V  V++   S  H  P   ++ FF W+  + + D+ SP+ +N ++DL GK   F
Sbjct: 108 RISPSVVRCVIEKCGSVRHGIPLHQSLAFFNWATSRDDYDQKSPHPYNEMIDLAGKVRQF 167

Query: 118 DAMWDAIKSMKKENV-LSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSL 176
           D  W  I  MK  NV +S+ TF  +   YV A    +A+  F+ ME YGC  D  A + +
Sbjct: 168 DLAWHLIDLMKSRNVEISIETFTILIRRYVRAGLASEAVHCFNRMEDYGCVPDQIAFSIV 227

Query: 177 LSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGW 236
           +S + R  +  +A  F   +  R +PD   Y  L+ GW +  +++ A+K F +M +  G 
Sbjct: 228 ISNLSRKRRASEAQSFFDSLKDRFEPDVIVYTNLVRGWCRAGEISEAEKVFKDMKL-AGI 286

Query: 237 DPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNP-GMTFFKLAFEECLTGQNLRG 295
           +P NV  Y S +I  L  C  I    +    M++ GC P  +TF  L       G+  + 
Sbjct: 287 EP-NVYTY-SIVIDALCRCGQISRAHDVFADMLDSGCAPNAITFNNLMRVHVKAGRPEKV 344

Query: 296 AEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILF 355
            + ++  M  ++G  PDT  YN +I  +C       A+K+L+ M+      +  T+N +F
Sbjct: 345 LQ-VYNQM-KKLGCEPDTITYNFLIETHCRDENLENAVKVLNTMIKKKCEVNASTFNTIF 402

Query: 356 EFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCS 415
            ++ K R +  A  ++++M++ +   N       +R++  S    + +K  K M +    
Sbjct: 403 RYIEKKRDVNGAHRMYSKMMEAKCEPNTVTYNILMRMFAGSKSTDMVLKMKKDMDDKEVE 462

Query: 416 DLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAV---Y 472
               T  LLV   C M     A K  K M E+   +TP +LS  + +L + R+      +
Sbjct: 463 PNVNTYRLLVTMFCGMGHWNNAYKLFKEMVEEKC-LTP-SLSLYEMVLAQLRRAGQLKKH 520

Query: 473 EELLKK 478
           EEL++K
Sbjct: 521 EELVEK 526


>gi|255548349|ref|XP_002515231.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545711|gb|EEF47215.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 505

 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 114/442 (25%), Positives = 208/442 (47%), Gaps = 23/442 (5%)

Query: 49  TPSPTVEDV---LDKTLIRVSQETVEQVLK---FSYSHPGPAVKFFRWSAYQLNDKHSPY 102
           T S +V+++   L  T I +S + +++VLK   FS+ +P  A++FF ++  +    H+PY
Sbjct: 47  TSSSSVQNLKQSLTSTGIFLSNDLIDKVLKRVRFSHGNPLQALEFFYYTDNRKGFYHTPY 106

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKEN--VLSLATFASVFSSYVVADRVKDAITTFDV 160
           + + ++ +LG++  FD +WD +  MK+++  ++S  T   V +       V+  + +F  
Sbjct: 107 SLDTILYILGRSRKFDHIWDVLIKMKRKDRFLISPRTMQIVLARVAKLCSVRQTVESFRK 166

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDV 220
            +++    D    N+LL  +C++    DA      +    KP+  T+ ILL GW++  + 
Sbjct: 167 FKKFVSVLDTTCFNALLRTLCQEKSMTDARNVYHRLKKEFKPNLQTFNILLSGWKQSEEA 226

Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFF 280
               + F E + E+G  PD V +Y+S +    K  + + +    +++M E   +P +   
Sbjct: 227 ----ELFFEEMRELGIKPD-VVSYNSLIDVYCKDRE-MEKAYKVVEKMREEDISPDV--- 277

Query: 281 KLAFEECLTGQNLRG----AEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLL 336
            + +   + G  L G    A  I   M    G  PD   YN +I  YC +   G A  L+
Sbjct: 278 -ITYTSIIGGLGLVGQPDKARDILNEM-KEYGCYPDVAAYNAVIRNYCIAKRLGDASNLM 335

Query: 337 DEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDS 396
           DEM   G  P+  TYN+ F        L  +  L+  M+++  + N ++C   +R++   
Sbjct: 336 DEMASKGLSPNATTYNLFFRVFYWSNDLRNSWSLYRRMMESGCLPNTQSCMFLIRLFRKH 395

Query: 397 DDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFAL 456
           +   +A+  W  M+E          ++L   LCDM  L EA K    M EKG + +  + 
Sbjct: 396 EKVEMALTLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKCFLQMIEKGHKPSNVSF 455

Query: 457 SKLKQILIKARKEAVYEELLKK 478
            ++K ++    K      L KK
Sbjct: 456 RRIKVLMELVNKHDALLNLQKK 477


>gi|449511317|ref|XP_004163923.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g02420-like [Cucumis sativus]
          Length = 495

 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 122/473 (25%), Positives = 218/473 (46%), Gaps = 17/473 (3%)

Query: 14  SPDPHNKRKRSTFASHLDVPNLPPTIKTLCEIIANTPSPT-VEDVLDKTLIRVSQETVEQ 72
           SP P +      F+S  D  +L   I+T+  II  + S T ++  L+ + + +S E ++ 
Sbjct: 17  SPIPLSIFYSHPFSSSTDNQSLHQNIETVFRIITTSSSSTDMKHSLESSRVFLSNELIDG 76

Query: 73  VLK---FSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKK 129
           VLK   FS+ +P  A++FF ++A +    H+ ++ + ++ +LG++  FD +WD +  +K 
Sbjct: 77  VLKRVRFSHGNPLQALEFFNYTAKRRGFYHTSFSVDTMLYILGRSRKFDKIWDVLLDVKF 136

Query: 130 EN--VLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTI 187
           ++  ++SL T   V         V+  + +F   +++  + DV   N+LL  +C++   +
Sbjct: 137 KDPSLISLRTVMVVLGRIAKVCSVRQTVESFRKFKKFVPEFDVTCFNALLRTLCQEKSMM 196

Query: 188 DAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSY 247
           DA      +    +P+  T+ ILL GW+   +   A+  F EM IE+G  PD V +Y+  
Sbjct: 197 DARNVYHGLKSMFRPNLQTFNILLSGWKSSEE---AEGFFDEM-IEMGVKPD-VVSYNCL 251

Query: 248 LITLLKG--CDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVG 305
           +    K    D  ++ V  ++   E      +T+  +     L GQ  +    +    + 
Sbjct: 252 VDVYCKNREMDKAFKVVGKMRD--EDIPADVITYTSIIGGLGLVGQPDKARNIL--KEMK 307

Query: 306 RIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLW 365
             G  PD   YN  I  +C +     A  LLDEMV  G  P+  TYN+ F        L 
Sbjct: 308 EYGCYPDVAAYNATIRNFCIAKRLHEAFDLLDEMVNKGLSPNATTYNLFFRIFFWSNDLQ 367

Query: 366 EASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLV 425
            A  L+  M+    + N ++C   VR++   +   +A++ W  MI+            L 
Sbjct: 368 SAWNLYRRMMDTGCLPNTQSCLFLVRLFKKYEKEEMALELWNDMIQKGFGSYILVSEELF 427

Query: 426 AGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKK 478
             LCD+  L EA      M +KG + +  +  ++K ++  A K    + L KK
Sbjct: 428 DLLCDLGKLIEAESCFLQMVDKGHKPSYTSFKRIKVLMELANKHEALQNLSKK 480


>gi|449466251|ref|XP_004150840.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g02420-like [Cucumis sativus]
          Length = 495

 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 122/473 (25%), Positives = 218/473 (46%), Gaps = 17/473 (3%)

Query: 14  SPDPHNKRKRSTFASHLDVPNLPPTIKTLCEIIANTPSPT-VEDVLDKTLIRVSQETVEQ 72
           SP P +      F+S  D  +L   I+T+  II  + S T ++  L+ + + +S E ++ 
Sbjct: 17  SPIPLSIFFSHPFSSSTDNQSLHQNIETVFRIITTSSSSTDMKHSLESSRVFLSNELIDG 76

Query: 73  VLK---FSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKK 129
           VLK   FS+ +P  A++FF ++A +    H+ ++ + ++ +LG++  FD +WD +  +K 
Sbjct: 77  VLKRVRFSHGNPLQALEFFNYTAKRRGFYHTSFSVDTMLYILGRSRKFDKIWDVLLDVKF 136

Query: 130 EN--VLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTI 187
           ++  ++SL T   V         V+  + +F   +++  + DV   N+LL  +C++   +
Sbjct: 137 KDPSLISLRTVMVVLGRIAKVCSVRQTVESFRKFKKFVPEFDVTCFNALLRTLCQEKSMM 196

Query: 188 DAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSY 247
           DA      +    +P+  T+ ILL GW+   +   A+  F EM IE+G  PD V +Y+  
Sbjct: 197 DARNVYHGLKSMFRPNLQTFNILLSGWKSSEE---AEGFFDEM-IEMGVKPD-VVSYNCL 251

Query: 248 LITLLKG--CDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVG 305
           +    K    D  ++ V  ++   E      +T+  +     L GQ  +    +    + 
Sbjct: 252 VDVYCKNREMDKAFKVVGKMRD--EDIPADVITYTSIIGGLGLVGQPDKARNIL--KEMK 307

Query: 306 RIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLW 365
             G  PD   YN  I  +C +     A  LLDEMV  G  P+  TYN+ F        L 
Sbjct: 308 EYGCYPDVAAYNATIRNFCIAKRLHEAFDLLDEMVNKGLSPNATTYNLFFRIFFWSNDLQ 367

Query: 366 EASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLV 425
            A  L+  M+    + N ++C   VR++   +   +A++ W  MI+            L 
Sbjct: 368 SAWNLYRRMMDTGCLPNTQSCLFLVRLFKKYEKEEMALELWNDMIQKGFGSYILVSEELF 427

Query: 426 AGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKK 478
             LCD+  L EA      M +KG + +  +  ++K ++  A K    + L KK
Sbjct: 428 DLLCDLGKLIEAESCFLQMVDKGHKPSYTSFKRIKVLMELANKHEALQNLSKK 480


>gi|356499705|ref|XP_003518677.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g02420-like [Glycine max]
          Length = 500

 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 115/470 (24%), Positives = 217/470 (46%), Gaps = 16/470 (3%)

Query: 17  PHNKRKRSTFASH-LDVPNLPPTIKTLCEIIANTPSP-TVEDVLDKTLIRVSQETVEQVL 74
           P N    ST   H L   N    ++ +  I+++T +P  ++  L  + + +S + ++QVL
Sbjct: 11  PSNYIPPSTLIRHRLLSSNQNDDVQKVFGILSSTSTPEQLKQSLKSSGVFLSNDVIDQVL 70

Query: 75  K---FSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKK-- 129
           K   FS+ +P   ++FFR++  +    HS ++ + ++ +LG++ +F  +W+ +   ++  
Sbjct: 71  KRVRFSHGNPSQTLEFFRYTGRRKGFYHSSFSLDTMLYILGRSRMFGQVWELLIEARRKD 130

Query: 130 ENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDA 189
           +  ++  T   V         V+  + +F    +   + D    N+LL  +C++    DA
Sbjct: 131 QTAITARTVMVVLGRIAKVCSVRQTVESFRKFRKLVQEFDTNCFNALLRTLCQEKSMADA 190

Query: 190 WQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLI 249
                 +  R +P+  T+ ILL GW+   D   A   F EM  E+G  PD V  Y+S + 
Sbjct: 191 RNVYHSLKHRFRPNLQTFNILLSGWKTPED---ADLFFKEMK-EMGVTPD-VVTYNSLMD 245

Query: 250 TLLKGCDGIYETVNSLKRMMERGCNPG-MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIG 308
              KG + I +    L  M ++  +P  +T+  +     L GQ  +    +    +   G
Sbjct: 246 VYCKGRE-IEKAYKMLDEMRDQDFSPDVITYTCIIGGLGLIGQPDKARNVL--KEMKEYG 302

Query: 309 FRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEAS 368
             PD   YN  I  +C +   G A  L++EMV  G  P+  TYN+ F        L  + 
Sbjct: 303 CYPDAAAYNAAIRNFCIAKRLGDAHGLVEEMVTKGLSPNATTYNLFFRVFYWSNDLQSSW 362

Query: 369 GLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGL 428
            ++  M+    + N ++C   +R++   +   +A++FW  M+E      +   ++L   L
Sbjct: 363 NMYQRMMVEGCLPNTQSCMFLIRLFRRHEKVEMALQFWGDMVEKGFGSYTLVSDVLFDLL 422

Query: 429 CDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKK 478
           CDM  L EA K    M EKG + +  +  ++K ++  A +    + L++K
Sbjct: 423 CDMGKLEEAEKCFLEMVEKGQKPSHVSFRRIKVLMELANRHEALQSLMQK 472


>gi|356549210|ref|XP_003542990.1| PREDICTED: pentatricopeptide repeat-containing protein At3g62470,
           mitochondrial-like [Glycine max]
          Length = 648

 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 111/446 (24%), Positives = 206/446 (46%), Gaps = 8/446 (1%)

Query: 36  PPTIKTLCEIIAN--TPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAY 93
           P  ++ +C++I         +E VLD+  +R+S + V  VL+       PA +FF W+  
Sbjct: 171 PVEVERVCKVIDELFALDRNMEVVLDECGVRLSHDLVVDVLQRFKHARKPAFRFFCWAGK 230

Query: 94  QLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKD 153
           +    H    +N ++ +LG+   F+ M   ++ M ++ +L++ TF+    ++  A + K 
Sbjct: 231 RPGFAHDSRTYNFMMCVLGRTRQFETMVAMLEEMGEKGLLTMETFSIAIKAFAEAKQRKK 290

Query: 154 AITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEG 213
           A+  FD+M++YG K  V  +N LL ++       +A      +  R  P   TY ILL G
Sbjct: 291 AVGIFDLMKKYGFKVGVDVINFLLDSLSTAKLGKEAQAVFEKLKDRFTPSLQTYTILLSG 350

Query: 214 WEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGC 273
           W + +++  A + + EM I+ G++PD V A++  L  LLK C    + +   + M  +G 
Sbjct: 351 WCRLKNLLEAGRVWNEM-IDRGFNPDVV-AHNVMLEGLLK-CKKKSDAIKLFEIMKAKGP 407

Query: 274 NPGMTFFKLAFEECLTGQNLRGAEF-IWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAA 332
           +P +  + +  ++    Q L G     +  MV R G +PD  +Y  +I+ +    +    
Sbjct: 408 SPNVRSYTIMIQD-FCKQKLMGEAIEYFDVMVDR-GCQPDAALYTCLITGFGRQKKMDMV 465

Query: 333 MKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRV 392
             LL EM   G  PD +TYN L + +       +A  ++ +M+++            ++ 
Sbjct: 466 YSLLKEMRERGCPPDGRTYNALIKLMTSQHMPDDAVRIYKKMIQSGIKPTIHTYNMIMKS 525

Query: 393 YMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVT 452
           Y  + +  +  + W  M +  C     +  + + GL       EA KY + M EKG++  
Sbjct: 526 YFVTKNYEMGHEIWDEMHQKGCCPDDNSYIVYIGGLIRQDRSGEACKYLEEMLEKGMKAP 585

Query: 453 PFALSKLKQILIKARKEAVYEELLKK 478
               +K    + K     + EEL +K
Sbjct: 586 KLDYNKFASDISKTGNAVILEELARK 611


>gi|225437663|ref|XP_002279193.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g02420-like [Vitis vinifera]
          Length = 526

 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 112/450 (24%), Positives = 211/450 (46%), Gaps = 21/450 (4%)

Query: 39  IKTLCEIIANTPSP-TVEDVLDKTLIRVSQETVEQVLK---FSYSHPGPAVKFFRWSAYQ 94
           ++T+  I+++  S   ++  L  + + +S + +++VLK   FS+ +P  A+ FF ++  +
Sbjct: 60  VETVFRIVSSASSTRNLKQSLKSSGVFLSNDLIDKVLKRVRFSHGNPFQALAFFNYTNKR 119

Query: 95  LNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKK--ENVLSLATFASVFSSYVVADRVK 152
               H+P++ + ++ +LG++  FD +W+ +  M++  ++++S  +   V         VK
Sbjct: 120 KGFYHTPFSLDTMLYILGRSRRFDQIWELLVDMRRKDQSLISPRSVQVVLGRIAKVCSVK 179

Query: 153 DAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLE 212
             + +F   ++   + D    N+LL  +C++    DA      +    +PD  T+ ILL 
Sbjct: 180 QTVESFRKFKKLVPEFDTACFNALLRTLCQEKSMRDARNVYHSLKHDFRPDLRTFNILLS 239

Query: 213 GWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERG 272
           GW+   +   A+  F EM  E+G +PD V +Y+  +    KG + I      + +M +  
Sbjct: 240 GWKSAEE---AEGFFDEMR-EMGVEPD-VVSYNCLIDVYCKGRE-IERAYKVIDKMRDEQ 293

Query: 273 CNPGMTFFKLAFEECLTGQNLRG----AEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNE 328
            +P +    +++   + G  L G    A  +   M    G  PD   YN  I  +C +N 
Sbjct: 294 ISPDV----ISYTSIIGGLGLVGQPDKARDVLKEM-KEYGCYPDVAAYNAAIRNFCIANR 348

Query: 329 TGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRA 388
            G A  L+DEMV  G  P+  TYN+ F        L  + GL+  M K   + N ++C  
Sbjct: 349 LGDADGLMDEMVGKGLSPNATTYNLFFRCFYWSNDLGRSCGLYQRMKKTGCLPNTQSCMF 408

Query: 389 AVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448
             R++   +   +A++ W  M+E          ++L   LCDM  L E  K    M EKG
Sbjct: 409 LTRLFRRQEKVEMALELWNDMVEKGFGSYILVSDVLFDMLCDMGKLVEVEKCCLQMIEKG 468

Query: 449 IQVTPFALSKLKQILIKARKEAVYEELLKK 478
            + +  +  ++K ++  A K    + L +K
Sbjct: 469 HKPSNVSFRRIKVLMELANKHEALQNLTEK 498


>gi|356517665|ref|XP_003527507.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
           mitochondrial-like [Glycine max]
          Length = 564

 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 112/401 (27%), Positives = 188/401 (46%), Gaps = 8/401 (1%)

Query: 84  AVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASVF 142
           ++ FF WS+       SP  +N ++DL GK   FD  W  I  MK   V +++ TF+++ 
Sbjct: 161 SLAFFNWSSSLDGFPASPEPYNEMLDLAGKLRQFDLAWHVIDLMKSRGVEITVHTFSALV 220

Query: 143 SSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKP 202
             YV A    +A+  F+ ME YGC  D+ A + ++S++C+  +  +A  F   +  R +P
Sbjct: 221 RRYVRAGLAAEAVHAFNRMEDYGCTPDMVAFSIVISSLCKKRRANEAQSFFDSLKHRFEP 280

Query: 203 DNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETV 262
           D   Y  L+ GW +  D++ A++ F +M +  G  P NV  Y S +I  L  C  I    
Sbjct: 281 DVVVYTSLVHGWCRAGDISKAEEVFSDMKM-AGIKP-NVYTY-SIVIDSLCRCGQITRAH 337

Query: 263 NSLKRMMERGCNP-GMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMIS 321
           +    M++ GC+P  +TF  L       G+  +  + ++  M  R+G   DT  YN +I 
Sbjct: 338 DVFSEMIDAGCDPNAVTFNSLMRVHVKAGRTEKVLK-VYNQM-KRLGCPADTISYNFIIE 395

Query: 322 LYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVL 381
            +C       A K+L+ MV  G  P+  T+N +F  + K   +  A  ++  M +     
Sbjct: 396 SHCRDENLEEAAKILNLMVKKGVAPNASTFNFIFGCIAKLHDVNGAHRMYARMKELNCQP 455

Query: 382 NHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYA 441
           N       +R++ +S    + +K  K M E+       T  +L++  CDM     A K  
Sbjct: 456 NTLTYNILMRMFAESRSTDMVLKMKKEMDESQVEPNVNTYRILISMFCDMKHWNNAYKLM 515

Query: 442 KGMA-EKGIQVTPFALSKLKQILIKARKEAVYEELLKKCKA 481
             M  EK ++        + ++L KA +   +EEL+ K  A
Sbjct: 516 MEMVEEKCLRPNLSVYETVLELLRKAGQLKKHEELVDKMVA 556



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 50/244 (20%), Positives = 100/244 (40%), Gaps = 5/244 (2%)

Query: 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASVFSSYVVADRVKDAITTFDV 160
           Y +++V+D L +        D    M       +  TF S+   +V A R +  +  ++ 
Sbjct: 318 YTYSIVIDSLCRCGQITRAHDVFSEMIDAGCDPNAVTFNSLMRVHVKAGRTEKVLKVYNQ 377

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRV-VDGRIKPDNDTYAILLEGWEKERD 219
           M++ GC  D  + N ++ + CRD    +A + L + V   + P+  T+  +     K  D
Sbjct: 378 MKRLGCPADTISYNFIIESHCRDENLEEAAKILNLMVKKGVAPNASTFNFIFGCIAKLHD 437

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTF 279
           V  A + +  M  E+   P+ +  Y+  L+ +          +   K M E    P +  
Sbjct: 438 VNGAHRMYARMK-ELNCQPNTL-TYN-ILMRMFAESRSTDMVLKMKKEMDESQVEPNVNT 494

Query: 280 FKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEM 339
           +++        ++   A  +   MV     RP+  +Y  ++ L   + +     +L+D+M
Sbjct: 495 YRILISMFCDMKHWNNAYKLMMEMVEEKCLRPNLSVYETVLELLRKAGQLKKHEELVDKM 554

Query: 340 VYNG 343
           V  G
Sbjct: 555 VARG 558


>gi|224111544|ref|XP_002315895.1| predicted protein [Populus trichocarpa]
 gi|222864935|gb|EEF02066.1| predicted protein [Populus trichocarpa]
          Length = 424

 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 116/432 (26%), Positives = 198/432 (45%), Gaps = 28/432 (6%)

Query: 63  IRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWD 122
           + VS   V + LK   +    A+ FFRW+  Q   ++S  +++ +++ LGK   F+ +W+
Sbjct: 1   MEVSPSLVFEALKKLSNAGALALSFFRWAEKQKGFQYSTESYHALIESLGKIKQFNVIWN 60

Query: 123 AIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICR 182
            +  MK++ +L+  TFA +   Y  A +VK+A+  F  ME++G K +   +N LL  +C+
Sbjct: 61  LVTDMKQKGLLNKETFALISRRYARARKVKEAVDAFMKMEKFGLKIESSDVNRLLDTLCK 120

Query: 183 DGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNV 241
             +   A      ++ R    D  +Y ILLEGW +E++++   + + EM  E G++PD V
Sbjct: 121 SRQVERAQLVFDKMNKRGFVADIKSYTILLEGWGQEKNLSRLMEVYNEMKDE-GFEPDVV 179

Query: 242 PAYDSYLITLLKGCDGIY--ETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGA-EF 298
               +Y I +   C      + +     M  + C P    +          + L  A EF
Sbjct: 180 ----TYGILINAHCKSRRYDDAIELFHEMEAKNCKPSPHIYCTLINGLGAEKRLSEALEF 235

Query: 299 IWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFL 358
               +    GF P+   YN ++  YC+S       + +DEM   G  P  +TY+I+   L
Sbjct: 236 F--ELSKASGFVPEAPTYNAVVGAYCWSERMDDVQRTIDEMRKGGVGPSARTYDIILHHL 293

Query: 359 VKGRKLWEASGLFNEMVKNENVLNHENCRAA-------VRVYMDSDDPYVAIKFWKYMIE 411
           ++  K   A  +F +M       + E C+ +       VR++ + D   +AIK W  M  
Sbjct: 294 IRAGKTKIAYSVFQKM-------SCEGCQPSVSTYEIIVRMFCNEDRVDMAIKVWDQMKA 346

Query: 412 NHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKE-- 469
                +    + L+  LC    L EA  Y + M + GI+      S LKQ L+   K+  
Sbjct: 347 KGILPVMHMFSTLINSLCHESKLDEACMYFQEMLDVGIRPPAQLFSNLKQNLLDEGKKDT 406

Query: 470 -AVYEELLKKCK 480
             V+E  L K +
Sbjct: 407 VVVFERKLDKLR 418


>gi|357467093|ref|XP_003603831.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492879|gb|AES74082.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 530

 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 117/457 (25%), Positives = 209/457 (45%), Gaps = 22/457 (4%)

Query: 29  HLDVPNLPPTIKTLCEIIANTPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPG-PAVKF 87
           +L +P+L      +  + + +PS             +++  +E+     +  P   ++ F
Sbjct: 83  NLSIPDLSIEFSKISTVYSVSPS-------------ITRRAIEKCSGVRHGIPFLQSLAF 129

Query: 88  FRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASVFSSYV 146
           F W+        SP  +N ++DL GK   FD  W  I  MK   V ++++TF+ +   YV
Sbjct: 130 FNWATTLEGFPSSPEPYNEMIDLAGKLRHFDLAWHLIDLMKSRGVRITVSTFSVLVRRYV 189

Query: 147 VADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDT 206
            A    +A+  F+ ME YGCK D  + + ++S++C+  +  +A  F   +  + +PD   
Sbjct: 190 RAGLAAEAVHAFNRMEDYGCKPDKVSFSIVISSLCKKRRASEAELFFDSLKHKFEPDVIV 249

Query: 207 YAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLK 266
           Y  L+ GW +  D+A A++ F +M  E G  P NV  Y S +I  L  C  I    +   
Sbjct: 250 YTSLVHGWCRAGDIAKAEEVFSDMK-EAGVKP-NVYTY-SIVIDSLCRCGQITRAHDVFS 306

Query: 267 RMMERGCNP-GMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCY 325
            M++ GC+P  +TF  L       G+  +  + ++  M  R+G   DT  YN +I  +C 
Sbjct: 307 EMIDAGCDPNAVTFNSLMRVHVKAGRTEKVLQ-VYNQM-KRLGCAADTISYNFLIESHCK 364

Query: 326 SNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHEN 385
                 A+K+LD MV  G  P+  T+N +F  + +   +  A  ++ +M + + + N   
Sbjct: 365 DENLDEAVKVLDTMVKKGVAPNASTFNSIFGCIAELHDVNGAHRMYAKMKELKCMPNTLT 424

Query: 386 CRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMA 445
               +R++ DS    + +K  K M E+       T  +L+   C+      A    K M 
Sbjct: 425 YNILMRMFADSKSIDMVLKLKKEMDESEVEPNVNTYRILILMFCEKGHWNNAYNLMKEMV 484

Query: 446 -EKGIQVTPFALSKLKQILIKARKEAVYEELLKKCKA 481
            EK ++        + ++L  A +   +EEL++K  A
Sbjct: 485 EEKCLKPNLSIYETVLELLRNAGQLKKHEELVEKMVA 521


>gi|449437410|ref|XP_004136485.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
           mitochondrial-like [Cucumis sativus]
 gi|449519964|ref|XP_004167004.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
           mitochondrial-like [Cucumis sativus]
          Length = 534

 Score =  141 bits (355), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 108/398 (27%), Positives = 177/398 (44%), Gaps = 6/398 (1%)

Query: 83  PAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASV 141
           PA+ FF W+      +HSP  +N ++DL GK   F   W  I  MK  NV +++ TF+ +
Sbjct: 130 PALAFFNWATAGEGFEHSPQPYNEMIDLAGKVKQFGLAWYLIDLMKARNVEITVVTFSML 189

Query: 142 FSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIK 201
              YV A    +A+  F+ ME YGC  D+ A ++++S +C+  + ++A  F   +  + +
Sbjct: 190 VRRYVRAGLAAEAVHAFNRMEDYGCNADIIAFSNVISILCKKRRAVEAQSFFDNLKHKFE 249

Query: 202 PDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYET 261
           PD   Y  L+ GW +  D++ A+  F EM +  G  P NV  Y S +I  L     I   
Sbjct: 250 PDVIVYTSLVHGWCRAGDISEAESVFREMKM-AGISP-NVYTY-SIVIDALCRSGQITRA 306

Query: 262 VNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMIS 321
            +    M++ GCNP    F       L          ++  M  R+    D   YN +I 
Sbjct: 307 HDVFAEMLDAGCNPNSVTFNNLIRVHLRAGRTEKVLQVYNQM-KRLRCAADLITYNFLIE 365

Query: 322 LYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVL 381
            +C  +  G A+K+L+ M  N   P+  ++N +F  + K + +  A  +F  M +     
Sbjct: 366 THCKDDNLGEAIKVLNSMAKNDCTPNASSFNPIFRCIAKSQDVNGAHRMFARMKEVGCKP 425

Query: 382 NHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYA 441
           N       +R++       +  K  K M E        T   L+A  C M     A  + 
Sbjct: 426 NTVTYNILMRMFAVPKSADMIFKLKKEMDEEEVEPNFNTYRELIALYCGMGHWNHAYMFF 485

Query: 442 KGMA-EKGIQVTPFALSKLKQILIKARKEAVYEELLKK 478
           + M  EK I+ +      + + L KA +   +EEL+ K
Sbjct: 486 REMIDEKCIKPSMPLYKMVLEELRKAGQLKKHEELVDK 523


>gi|297821162|ref|XP_002878464.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324302|gb|EFH54723.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 628

 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 107/455 (23%), Positives = 207/455 (45%), Gaps = 6/455 (1%)

Query: 28  SHLDVPNLPPTIKTLCEIIAN--TPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAV 85
           S +D    P  ++ +C++I         +E VLD+  + +S + + +VL+       PA 
Sbjct: 129 SCVDSSTNPEEVERVCKVIDELFALDRNMEAVLDEMKVELSHDLIVKVLERFRHARKPAF 188

Query: 86  KFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSY 145
           +FF W+A +    H    +N ++ +L K   F+ M   ++ M  + +L++ TF     ++
Sbjct: 189 RFFCWAAEKQGFAHDSRTYNSMMSILAKTRQFETMVSVLEEMGTKGLLTMETFTIAMKAF 248

Query: 146 VVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDND 205
             A   K A+  F++M++Y  K  V  +N LL ++ R     +A      +  R  P+  
Sbjct: 249 AAAKERKKAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLKERFTPNMM 308

Query: 206 TYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSL 265
           TY +LL GW + R++  A + + +M I+ G  PD V A++  L  LL+      + +   
Sbjct: 309 TYTVLLNGWCRVRNLIEAARIWNDM-IDQGLKPDIV-AHNVMLEGLLRSRKK-SDAIKLF 365

Query: 266 KRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCY 325
             M  +G  P +  + +   +     ++  A   +  MV   G +PD  +Y  +I+ +  
Sbjct: 366 HVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDS-GLQPDAAVYTCLITGFGT 424

Query: 326 SNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHEN 385
             +     +LL EM   G  PD +TYN L + +   +    A+ ++N+M++NE   +   
Sbjct: 425 QKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHATRIYNKMIQNEIEPSIHT 484

Query: 386 CRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMA 445
               ++ Y  + +  +    W  MI+        +  +L+ GL       EA +Y + M 
Sbjct: 485 FNMIMKSYFMARNYEMGSAVWDEMIKKGICPDDNSYTVLIRGLIGEGKSREACRYLEEML 544

Query: 446 EKGIQVTPFALSKLKQILIKARKEAVYEELLKKCK 480
           +KG++      +K      K  +  ++EEL ++ K
Sbjct: 545 DKGMKTPLIDYNKFAADFHKGGQPEIFEELAQRAK 579


>gi|147862837|emb|CAN78368.1| hypothetical protein VITISV_028672 [Vitis vinifera]
          Length = 927

 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 106/447 (23%), Positives = 201/447 (44%), Gaps = 6/447 (1%)

Query: 36  PPTIKTLCEIIAN--TPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAY 93
           P  +  +C +I         +E VLD+  + +S   V  VL+       PA +FF W+  
Sbjct: 202 PEEVSRVCRVIDELFALDRNMEAVLDECNVDLSHALVVGVLERFKHARKPAFRFFCWAGQ 261

Query: 94  QLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKD 153
           +    H+   +N ++ +LG+   F++M   +  M ++ +L++ TF+    ++  A   K 
Sbjct: 262 KAGFTHNSRTYNAMMSVLGRTRQFESMMGMLGEMGEKGLLTMETFSIAIKAFAAAKERKK 321

Query: 154 AITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEG 213
           A+  F++M++Y     V  +N LL  + R     +A      ++ R  P+  TY +LL G
Sbjct: 322 AVGVFELMKRYNFDAGVDTINCLLDNLGRAKLGKEAQALFEKLEDRFTPNLRTYTVLLNG 381

Query: 214 WEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGC 273
           W + +++  A +T+ EM I+ G+ PD + A+ + L  LLK C    + +   + M  +G 
Sbjct: 382 WCRIKNLVEAGRTWNEM-IDKGFKPD-IIAHHTMLEGLLK-CKKKSDAIKLFEVMKAKGP 438

Query: 274 NPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAM 333
           +P +  + +   +      ++ A   +  MV   G +PD  +Y  +I+ +    +     
Sbjct: 439 SPNVRTYTILIRDLCKQMKMKEAVEYFDEMVDS-GCQPDAAVYTCLITGFGNQKKMDKVY 497

Query: 334 KLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVY 393
            LL EM   G   D +TYN L + +   +   +A  ++ +M++N            ++ Y
Sbjct: 498 ALLKEMKEKGCPADGRTYNALIKLMTNRQMPDDAVRIYKKMIQNGIQPTLHTYNMMMKSY 557

Query: 394 MDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTP 453
             + +  +    WK M    C     +  + + GL       EA +Y + M EKG++   
Sbjct: 558 FYTRNYEMGCAVWKEMGRKGCCPDDNSYIVFIGGLIRHGRSEEACRYLEEMIEKGMKAPQ 617

Query: 454 FALSKLKQILIKARKEAVYEELLKKCK 480
              +K      +A K  + EEL +K K
Sbjct: 618 LDYNKFAADFSRAGKPDILEELARKMK 644


>gi|15228767|ref|NP_191806.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75181319|sp|Q9LZP3.1|PP293_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g62470, mitochondrial; Flags: Precursor
 gi|7340718|emb|CAB82961.1| putative protein [Arabidopsis thaliana]
 gi|34365579|gb|AAQ65101.1| At3g62470 [Arabidopsis thaliana]
 gi|332646835|gb|AEE80356.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 599

 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 106/458 (23%), Positives = 209/458 (45%), Gaps = 6/458 (1%)

Query: 25  TFASHLDVPNLPPTIKTLCEIIAN--TPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPG 82
           T  S ++    P  ++ +C++I         +E VLD+  + +S + + +VL+       
Sbjct: 117 TGVSCVESSTNPEEVERVCKVIDELFALDRNMEAVLDEMKLDLSHDLIVEVLERFRHARK 176

Query: 83  PAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVF 142
           PA +FF W+A +    H    +N ++ +L K   F+ M   ++ M  + +L++ TF    
Sbjct: 177 PAFRFFCWAAERQGFAHDSRTYNSMMSILAKTRQFETMVSVLEEMGTKGLLTMETFTIAM 236

Query: 143 SSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKP 202
            ++  A   K A+  F++M++Y  K  V  +N LL ++ R     +A      +  R  P
Sbjct: 237 KAFAAAKERKKAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLKERFTP 296

Query: 203 DNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETV 262
           +  TY +LL GW + R++  A + + +M I+ G  PD V A++  L  LL+      + +
Sbjct: 297 NMMTYTVLLNGWCRVRNLIEAARIWNDM-IDQGLKPDIV-AHNVMLEGLLRSRKK-SDAI 353

Query: 263 NSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISL 322
                M  +G  P +  + +   +     ++  A   +  MV   G +PD  +Y  +I+ 
Sbjct: 354 KLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDS-GLQPDAAVYTCLITG 412

Query: 323 YCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLN 382
           +    +     +LL EM   G  PD +TYN L + +   +    A+ ++N+M++NE   +
Sbjct: 413 FGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHATRIYNKMIQNEIEPS 472

Query: 383 HENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAK 442
                  ++ Y  + +  +    W+ MI+        +  +L+ GL       EA +Y +
Sbjct: 473 IHTFNMIMKSYFMARNYEMGRAVWEEMIKKGICPDDNSYTVLIRGLIGEGKSREACRYLE 532

Query: 443 GMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKCK 480
            M +KG++      +K      +  +  ++EEL ++ K
Sbjct: 533 EMLDKGMKTPLIDYNKFAADFHRGGQPEIFEELAQRAK 570


>gi|15228788|ref|NP_191813.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122214682|sp|Q3EAF8.1|PP294_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g62540, mitochondrial; Flags: Precursor
 gi|332646841|gb|AEE80362.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 599

 Score =  137 bits (346), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 105/458 (22%), Positives = 208/458 (45%), Gaps = 6/458 (1%)

Query: 25  TFASHLDVPNLPPTIKTLCEIIAN--TPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPG 82
           T  S ++    P  ++ +C++I         +E VLD+  + +S + + +VL+       
Sbjct: 117 TGVSCVESSTNPEEVERVCKVIDELFALDRNMEAVLDEMKLDLSHDLIVEVLERFRHARK 176

Query: 83  PAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVF 142
           PA +FF W+A +    H+   +N ++ +L K   F+ M   ++ M  + +L++ TF    
Sbjct: 177 PAFRFFCWAAERQGFAHASRTYNSMMSILAKTRQFETMVSVLEEMGTKGLLTMETFTIAM 236

Query: 143 SSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKP 202
            ++  A   K A+  F++M++Y  K  V  +N LL ++ R     +A      +  R  P
Sbjct: 237 KAFAAAKERKKAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLKERFTP 296

Query: 203 DNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETV 262
           +  TY +LL GW + R++  A + + +M I+ G  PD V A++  L  LL+      + +
Sbjct: 297 NMMTYTVLLNGWCRVRNLIEAARIWNDM-IDHGLKPDIV-AHNVMLEGLLRSMKK-SDAI 353

Query: 263 NSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISL 322
                M  +G  P +  + +   +     ++  A   +  MV   G +PD  +Y  +I+ 
Sbjct: 354 KLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDS-GLQPDAAVYTCLITG 412

Query: 323 YCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLN 382
           +    +     +LL EM   G  PD +TYN L + +   +     + ++N+M++NE   +
Sbjct: 413 FGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRIYNKMIQNEIEPS 472

Query: 383 HENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAK 442
                  ++ Y  + +  +    W  MI+        +  +L+ GL       EA +Y +
Sbjct: 473 IHTFNMIMKSYFVARNYEMGRAVWDEMIKKGICPDDNSYTVLIRGLISEGKSREACRYLE 532

Query: 443 GMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKCK 480
            M +KG++      +K      +  +  ++EEL ++ K
Sbjct: 533 EMLDKGMKTPLIDYNKFAADFHRGGQPEIFEELAQRAK 570


>gi|297839201|ref|XP_002887482.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333323|gb|EFH63741.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 490

 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 111/411 (27%), Positives = 179/411 (43%), Gaps = 21/411 (5%)

Query: 54  VEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLG- 112
           +E  LD +++ ++   V ++L+        A +FF W+ +Q +  H P A+N ++D+L  
Sbjct: 10  MEKALDDSVVDLTTPVVCKILQRLQYEEKTAFRFFTWAGHQEHYSHEPIAYNEMIDILSS 69

Query: 113 ---KNCLFDAMWDAIKSMK--KENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCK 167
              KN  F  + D +  MK  K+ V+       +   Y   +R    +  F   ++   K
Sbjct: 70  TKYKNKQFRIVIDMLDYMKRNKKTVVPADILLEILRKY--CERYLTHVQKFAKRKRIRVK 127

Query: 168 H--DVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKK 225
              ++ A N LL A+C+ G   +    LR +  R+KPD  T+ +L  GW + RD   A K
Sbjct: 128 TQPEINAFNMLLDALCKCGLVKEGEALLRRMRHRVKPDATTFNVLFFGWCRVRDPKKAMK 187

Query: 226 TFGEMVIEVGWDPDNVPAYDSYLITLLKGCDG--IYETVNSLKRMMERGC---NPGMTFF 280
              EM I+ G  P+N     +Y   +   C    + E  +  + M+ +G     P    F
Sbjct: 188 LLEEM-IQAGHKPENF----TYCAAIDTFCQAGMVDEAADLFEFMITKGSVVSAPTAKTF 242

Query: 281 KLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMV 340
            L                + G M+   G  PD   Y  +I   C + +   A K LDEM 
Sbjct: 243 ALMIVALAKNDKAEECFELIGRMIS-TGCLPDVSTYKDVIEGMCMAGKVEEAYKFLDEMS 301

Query: 341 YNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPY 400
             G  PDI TYN     L + RK  EA  L+  MV++    + +     + ++ + DDP 
Sbjct: 302 NKGYPPDIVTYNCFLRVLCENRKSDEALKLYGRMVESRCAPSVQTYNMLISMFFEMDDPD 361

Query: 401 VAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQV 451
            A   WK M E  C    ET  +++ GL D H   EA    + +  KG+++
Sbjct: 362 GAFNTWKEMDERDCVQDIETYCVMINGLFDCHRAKEACFLLEEVVNKGLKL 412


>gi|224077524|ref|XP_002305285.1| predicted protein [Populus trichocarpa]
 gi|222848249|gb|EEE85796.1| predicted protein [Populus trichocarpa]
          Length = 523

 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 115/446 (25%), Positives = 198/446 (44%), Gaps = 9/446 (2%)

Query: 24  STFASHLDVPNLPPTIKTLCEIIANTPSP--TVEDVLDKTLIRVSQETVEQVLKFSYSHP 81
           ST      +P LP  +  +  I+++  +P   +E  L+     +S   VEQVLK   +  
Sbjct: 33  STLTPLNQIPPLPGLVNEISRILSDQRNPHHDLETSLNAFSSEISTNLVEQVLKRCKNLG 92

Query: 82  GPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSL--ATFA 139
             A +FF W+      +HS  +++++V++LG +  F  +WD +  M++ +   +      
Sbjct: 93  FSAHRFFLWAKRIPGFEHSEESYHILVNILGTSRQFAILWDFLIEMRESHDFEINQEIIW 152

Query: 140 SVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR 199
            VF SY  A+   DAI  FD M ++G +  V  L+ LL  +C+      A QF   V  +
Sbjct: 153 LVFRSYSRANLPSDAIRAFDRMAEFGLRPSVDDLDKLLYVLCKCKHVKCAQQFFDRVKHK 212

Query: 200 IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIY 259
            +    TY+IL+ GW    +   A+K F EM    G   D V AY+S L  L KG   + 
Sbjct: 213 FEAKAKTYSILVRGWGDIGEAVEARKVFDEMRGR-GCALD-VLAYNSLLEALCKG-GNVD 269

Query: 260 ETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMM 319
           E     + +   G  P    + +         N+     +   M  R    P+   YN +
Sbjct: 270 EAYKMFREIGSHGVEPDACSYAIFIRAYCEANNIHSVFSVLDRM-KRYDLVPNVFTYNCI 328

Query: 320 ISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNEN 379
           I   C + +   A +LL EM+  G  PD  +YN +  +  +  ++  A+ L + MVK+  
Sbjct: 329 IKKLCKNGKVEDAYQLLHEMMERGVSPDAWSYNTILAYHCEHSEVNRATKLISIMVKDNC 388

Query: 380 VLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMH-MLPEAV 438
           + +  +    +++ +       A + W+ M E        T ++++ GLC     L EA 
Sbjct: 389 LPDRHSYNMLLKLLVRVGRFDRATEIWESMGERGFYPSVSTYSVMIHGLCKKKGKLEEAC 448

Query: 439 KYAKGMAEKGIQVTPFALSKLKQILI 464
           +Y + M ++GI      +  L+  LI
Sbjct: 449 RYFETMIDEGIPPYASTIEMLRNRLI 474


>gi|449494638|ref|XP_004159605.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49730-like [Cucumis sativus]
          Length = 664

 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 111/425 (26%), Positives = 183/425 (43%), Gaps = 8/425 (1%)

Query: 48  NTPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLV 107
           +T  P +E  L ++ + +     E+VL           +FF W++ Q   +HS   +  +
Sbjct: 111 HTRVPKLELALQESGVIMRSGLPERVLSRCGDAGNLGYRFFVWASKQPGYRHSYEVYKAM 170

Query: 108 VDLLGKNCLFDAMWDAIKSMKKEN--VLSLATFASVFSSYVVADRVKDAITTFDVMEQYG 165
           +  LGK   F A+W  I+ M+KEN  +L+   F  +   +     VK A+   D M +YG
Sbjct: 171 IKTLGKMRQFGAVWALIEEMRKENPYMLTPEVFIVLMRRFASVRMVKKAVEVLDEMPKYG 230

Query: 166 CKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKK 225
           C+ D +    LL A+C++G   +A      +  R  P+   +  LL GW +E  +  AK 
Sbjct: 231 CEPDEYVFGCLLDALCKNGSVKEAASLFEDMRVRFNPNLRHFTSLLYGWCREGKIMEAKH 290

Query: 226 TFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFE 285
              + + E G++PD V  Y++ L    +    + +  + L  M +  C P    F +  +
Sbjct: 291 VLVQ-IKEAGFEPDIV-VYNNLLGGYAQA-GKMRDAFDLLAEMKKVNCGPNAASFTILIQ 347

Query: 286 ECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAF 345
                + +  A  I+  M G  G   D   Y  +IS +C    T  A ++LD+M+  G  
Sbjct: 348 SFCKTEKMDEAMRIFTEMQGS-GCEADVVTYTTLISGFCKWGNTDKAYEILDDMIQKGHD 406

Query: 346 PDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKF 405
           P   +Y  +     K  +L E   L  EM K   V +       +R+     D   A++ 
Sbjct: 407 PSQLSYLCIMMAHEKKEELEECMELIEEMRKIGCVPDLNIYNTMIRLVCKLGDLKEAVRL 466

Query: 406 WKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTP--FALSKLKQIL 463
           W  M     +   +T  L+V G      L EA  Y K M E+G+   P    L +L   L
Sbjct: 467 WGEMQAGGLNPGLDTYILMVHGFLSQGCLVEACDYFKEMVERGLLSAPQYGTLKELTNAL 526

Query: 464 IKARK 468
           ++A K
Sbjct: 527 LRAEK 531


>gi|356561933|ref|XP_003549231.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g62470, mitochondrial-like [Glycine max]
          Length = 510

 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 107/445 (24%), Positives = 203/445 (45%), Gaps = 6/445 (1%)

Query: 36  PPTIKTLCEIIAN--TPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAY 93
           P  ++ +C++I         +E VLD+  +R+S + V  VL+       PA +FF  +  
Sbjct: 33  PVEVERVCKVIDELFALDRNMEVVLDECGVRLSHDLVVDVLQRFKHARKPAFRFFCXAGK 92

Query: 94  QLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKD 153
           +    H    +N ++ +LG+   F+ M   ++ M ++ +L++ TF+    ++  A + K 
Sbjct: 93  RPGFAHDSRTYNFMMCVLGRTRQFETMVAKLEEMGEKGLLTMETFSIAIKAFAEAKQRKK 152

Query: 154 AITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEG 213
            +  FD+M++YG K  V  +N LL ++       +A      +  R  P   TY ILL G
Sbjct: 153 EVGIFDLMKKYGFKVGVDVINFLLDSLSTAKLGKEAQAVFEKLKDRFTPSLQTYTILLSG 212

Query: 214 WEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGC 273
           W + +++  A + + EM I+ G++PD V A++  L  LLK C    + +   + M  +G 
Sbjct: 213 WCRLKNLLEAGRVWNEM-IDRGFNPDIV-AHNVMLEGLLK-CKKKSDAIKLFEIMKAKGP 269

Query: 274 NPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAM 333
           +P +  + +  ++    + +  A   +  MV R G +PD  +Y  +I+ +    +     
Sbjct: 270 SPNVRSYTIMIQDFCKQKLMGEAIEYFDVMVDR-GCQPDAALYTCLITGFGRQKKMDMVY 328

Query: 334 KLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVY 393
            LL EM   G  PD +TYN L + +       +A  ++ +M+++            ++ Y
Sbjct: 329 SLLKEMRERGCPPDGRTYNALIKLMTSQHMPDDAVRIYKKMIQSGIKPTIHTYNMIMKSY 388

Query: 394 MDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTP 453
             + +  +  + W  M    C     +  + + GL       EA KY + M EKG++   
Sbjct: 389 FVTKNYEMGHEIWDEMHPKGCCPDDNSYIVYIGGLIRQDRSGEACKYLEEMLEKGMKALK 448

Query: 454 FALSKLKQILIKARKEAVYEELLKK 478
              +K    + K     + EEL +K
Sbjct: 449 LDYNKFASDISKTGNAVILEELARK 473


>gi|449463822|ref|XP_004149630.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49730-like [Cucumis sativus]
          Length = 641

 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 111/425 (26%), Positives = 183/425 (43%), Gaps = 8/425 (1%)

Query: 48  NTPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLV 107
           +T  P +E  L ++ + +     E+VL           +FF W++ Q   +HS   +  +
Sbjct: 88  HTRVPKLELALQESGVIMRSGLPERVLSRCGDAGNLGYRFFVWASKQPGYRHSYEVYKAM 147

Query: 108 VDLLGKNCLFDAMWDAIKSMKKEN--VLSLATFASVFSSYVVADRVKDAITTFDVMEQYG 165
           +  LGK   F A+W  I+ M+KEN  +L+   F  +   +     VK A+   D M +YG
Sbjct: 148 IKTLGKMRQFGAVWALIEEMRKENPYMLTPEVFIVLMRRFASVRMVKKAVEVLDEMPKYG 207

Query: 166 CKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKK 225
           C+ D +    LL A+C++G   +A      +  R  P+   +  LL GW +E  +  AK 
Sbjct: 208 CEPDEYVFGCLLDALCKNGSVKEAASLFEDMRVRFNPNLRHFTSLLYGWCREGKIMEAKH 267

Query: 226 TFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFE 285
              + + E G++PD V  Y++ L    +    + +  + L  M +  C P    F +  +
Sbjct: 268 VLVQ-IKEAGFEPDIV-VYNNLLGGYAQA-GKMRDAFDLLAEMKKVNCGPNAASFTILIQ 324

Query: 286 ECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAF 345
                + +  A  I+  M G  G   D   Y  +IS +C    T  A ++LD+M+  G  
Sbjct: 325 SFCKTEKMDEAMRIFTEMQGS-GCEADVVTYTTLISGFCKWGNTDKAYEILDDMIQKGHD 383

Query: 346 PDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKF 405
           P   +Y  +     K  +L E   L  EM K   V +       +R+     D   A++ 
Sbjct: 384 PSQLSYLCIMMAHEKKEELEECMELIEEMRKIGCVPDLNIYNTMIRLVCKLGDLKEAVRL 443

Query: 406 WKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTP--FALSKLKQIL 463
           W  M     +   +T  L+V G      L EA  Y K M E+G+   P    L +L   L
Sbjct: 444 WGEMQAGGLNPGLDTYILMVHGFLSQGCLVEACDYFKEMVERGLLSAPQYGTLKELTNAL 503

Query: 464 IKARK 468
           ++A K
Sbjct: 504 LRAEK 508


>gi|15241508|ref|NP_196986.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75173968|sp|Q9LEQ7.1|PP382_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g14820, mitochondrial; Flags: Precursor
 gi|9755750|emb|CAC01881.1| putative protein [Arabidopsis thaliana]
 gi|332004697|gb|AED92080.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 598

 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 105/458 (22%), Positives = 207/458 (45%), Gaps = 6/458 (1%)

Query: 25  TFASHLDVPNLPPTIKTLCEIIAN--TPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPG 82
           T  S ++    P  ++ +C++I         +E VLD+  + +S + + +VL+       
Sbjct: 116 TGVSCVESSTNPEEVERVCKVIDELFALDRNMEAVLDEMKLDLSHDLIVEVLERFRHARK 175

Query: 83  PAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVF 142
           PA +FF W+A +    H    +N ++ +L K   F+ M   ++ M  + +L++ TF    
Sbjct: 176 PAFRFFCWAAERQGFAHDSRTYNSMMSILAKTRQFETMVSVLEEMGTKGLLTMETFTIAM 235

Query: 143 SSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKP 202
            ++  A   K A+  F++M++Y  K  V  +N LL ++ R     +A      +  R  P
Sbjct: 236 KAFAAAKERKKAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLKERFTP 295

Query: 203 DNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETV 262
           +  TY +LL GW + R++  A + + +M I+ G  PD V A++  L  LL+      + +
Sbjct: 296 NMMTYTVLLNGWCRVRNLIEAARIWNDM-IDHGLKPDIV-AHNVMLEGLLRSMKK-SDAI 352

Query: 263 NSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISL 322
                M  +G  P +  + +   +     ++  A   +  MV   G +PD  +Y  +I+ 
Sbjct: 353 KLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDS-GLQPDAAVYTCLITG 411

Query: 323 YCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLN 382
           +    +     +LL EM   G  PD +TYN L + +   +     + ++N+M++NE   +
Sbjct: 412 FGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRIYNKMIQNEIEPS 471

Query: 383 HENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAK 442
                  ++ Y  + +  +    W  MI+        +  +L+ GL       EA +Y +
Sbjct: 472 IHTFNMIMKSYFVARNYEMGRAVWDEMIKKGICPDDNSYTVLIRGLISEGKSREACRYLE 531

Query: 443 GMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKCK 480
            M +KG++      +K      +  +  ++EEL ++ K
Sbjct: 532 EMLDKGMKTPLIDYNKFAADFHRGGQPEIFEELAQRAK 569


>gi|413945076|gb|AFW77725.1| ATP binding protein isoform 1 [Zea mays]
 gi|413945077|gb|AFW77726.1| ATP binding protein isoform 2 [Zea mays]
 gi|413945078|gb|AFW77727.1| ATP binding protein isoform 3 [Zea mays]
          Length = 634

 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 113/453 (24%), Positives = 199/453 (43%), Gaps = 15/453 (3%)

Query: 36  PPTIKTLCEIIANTPSPTVEDVLDKTLIRVSQETVEQVL-----KFSYSHPGPAVKFFRW 90
           P  +  +C  IA+  +   +  L+  L  +S    E V+     +F ++H  P+ +FFRW
Sbjct: 159 PEGVDRVCAAIADVVASGADANLEAALSALSPPLCEAVVLAVLHRFKHAH-RPSYRFFRW 217

Query: 91  SAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADR 150
           +       H+   +  ++ +LGK   F++M   I+ M K   LS+  F     S+  A  
Sbjct: 218 ATVSGGFTHTTITYCKMLHILGKTRQFESMVAMIQEMGKAGALSMDAFKVAIKSFAAAGE 277

Query: 151 VKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAIL 210
           +K+A+  F++M + G    V + N LL A+ ++G   +A Q    + G+  PD  +Y  L
Sbjct: 278 IKNAVGVFELMRKNGFDDGVESFNCLLVALAKEGLGREARQVFDKMHGQYSPDLRSYTAL 337

Query: 211 LEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMME 270
           +  W   R++  A + + EM +E G DPD V  +++ +  LL+G     E V   + M  
Sbjct: 338 MLAWCNARNLVEAGRVWNEM-LEKGMDPDVV-VHNTMIEGLLRG-QRRPEAVKMFELMKA 394

Query: 271 RGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNET 329
           +G  P + T+  L  + C  G+     E        +   +PD   Y  ++  Y  + + 
Sbjct: 395 KGPPPNVWTYTMLIRDHCKQGKMDMAMECFEEMQEAKC--QPDVATYTCLLVGYGNAKQM 452

Query: 330 GAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAA 389
                +L+EM   G  PD +TYN L + L       +A+ ++ +M+K             
Sbjct: 453 DRVTAVLEEMTQKGCPPDARTYNALIKLLTNRNMPDDAARIYKKMIKKGLEPTIHTYNMM 512

Query: 390 VRVYMDSDDPY-VAIKFWKYMIENH-CSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEK 447
           ++ Y   D  Y +    W+ M +   C D++    + + G        EA KY + M  K
Sbjct: 513 MKSYFVGDSNYAMGCAVWEEMHQRGICPDVNSY-TVFINGHIRHGRPEEAYKYIEEMINK 571

Query: 448 GIQVTPFALSKLKQILIKARKEAVYEELLKKCK 480
           G++      +K      KA K  +  EL +K K
Sbjct: 572 GMKAPQIDYNKFAADFSKAGKPDILFELAQKVK 604


>gi|225447826|ref|XP_002268129.1| PREDICTED: pentatricopeptide repeat-containing protein At3g62470,
           mitochondrial-like [Vitis vinifera]
          Length = 679

 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 105/447 (23%), Positives = 201/447 (44%), Gaps = 6/447 (1%)

Query: 36  PPTIKTLCEIIAN--TPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAY 93
           P  +  +C +I         +E VLD+  + +S   V  VL+       PA +FF W+  
Sbjct: 202 PEEVSRVCRVIDELFALDRNMEAVLDECNVDLSHALVVGVLERFKHARKPAFRFFCWAGQ 261

Query: 94  QLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKD 153
           +    H+   +N ++ +LG+   F++M   +  M ++ +L++ TF+    ++  A   K 
Sbjct: 262 KAGFTHNSRTYNAMMSVLGRTRQFESMMGMLGEMGEKGLLTMETFSIAIKAFAAAKERKK 321

Query: 154 AITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEG 213
           A+  F++M++Y     V  +N LL  + R     +A      ++ R  P+  TY +LL G
Sbjct: 322 AVGVFELMKRYNFDAGVDTINCLLDNLGRAKLGKEAQALFEKLEDRFTPNLRTYTVLLNG 381

Query: 214 WEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGC 273
           W + +++  A +T+ EM I+ G+ PD + A+ + L  LLK C    + +   + M  +G 
Sbjct: 382 WCRIKNLVEAGRTWNEM-IDKGFKPD-IIAHHTMLEGLLK-CKKKSDAIKLFEVMKAKGP 438

Query: 274 NPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAM 333
           +P +  + +   +      ++ A   +  MV   G +PD  +Y  +I+ +    +     
Sbjct: 439 SPNVRTYTILIRDLCKQMKMQEAVEYFDEMVDS-GCQPDAAVYTCLITGFGNQKKMDKVY 497

Query: 334 KLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVY 393
            LL EM   G   D +TYN L + +   +   +A  ++ +M++N            ++ Y
Sbjct: 498 ALLKEMKEKGCPADGRTYNALIKLMTNRQMPDDAVRIYKKMIQNGIQSTLHTYNMMMKSY 557

Query: 394 MDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTP 453
             + +  +    W+ M    C     +  + + GL       EA +Y + M EKG++   
Sbjct: 558 FYTRNYEMGCAVWEEMGRKGCCPDDNSYIVFIGGLIRHGRSEEACRYLEEMIEKGMKAPQ 617

Query: 454 FALSKLKQILIKARKEAVYEELLKKCK 480
              +K      +A K  + EEL +K K
Sbjct: 618 LDYNKFAADFSRAGKPDILEELARKMK 644


>gi|225459754|ref|XP_002284756.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
           mitochondrial-like [Vitis vinifera]
          Length = 531

 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 113/418 (27%), Positives = 193/418 (46%), Gaps = 10/418 (2%)

Query: 65  VSQETVEQVLKFSYSHPGP-AVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDA 123
           + +  +E+     +  P P  + FF W+       HSP  +  ++DL GK   FD  W  
Sbjct: 109 IVRRVIEKCGGVRHGIPFPQTLAFFNWATNLEEFGHSPEPYMEMIDLAGKVRQFDLAWQL 168

Query: 124 IKSMKKENV-LSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICR 182
           I  MK  NV + + TF  +   YV A    +A+  F+ ME YGCK D  A + ++S++ +
Sbjct: 169 IDLMKTRNVEIPVETFTILVRRYVKAGLAAEAVHAFNRMEDYGCKPDKIAFSVVISSLSK 228

Query: 183 DGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVP 242
             + I+A  F   +  R +PD   Y  L+ GW +  +++ A++ FGEM +  G  P NV 
Sbjct: 229 KRRAIEAQSFFDSLKDRFEPDVVVYTSLVHGWCRAGNISEAERVFGEMKM-AGIQP-NVY 286

Query: 243 AYDSYLITLLKGCDGIYETVNSLKRMMERGCNP-GMTFFKLAFEECLTGQNLRGAEFIWG 301
            Y S +I  L     I    +    M++ GC+P  +TF  L       G+  +  + ++ 
Sbjct: 287 TY-SIVIDALCRSGQITRAHDVFSEMIDVGCDPNAITFNNLMRVHVKAGRTEKVLQ-VYN 344

Query: 302 AMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKG 361
            M  R+G  PD   YN +I  +C  +    A+K+L+  V  G   +  ++N +F  + K 
Sbjct: 345 QM-KRLGCPPDAITYNFLIESHCRDDNLEEAVKILNS-VKKGCNLNASSFNPIFGCISKL 402

Query: 362 RKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETG 421
             +  A  +F +M   +   N       +R++ D     + +K  K M EN     + T 
Sbjct: 403 GDVNSAHRMFAKMKDLKCRPNTVTYNILMRMFADKKSTDMVLKLRKEMDENEIEPNANTY 462

Query: 422 NLLVAGLCDMHMLPEAVKYAKGM-AEKGIQVTPFALSKLKQILIKARKEAVYEELLKK 478
            +L++  C +     A  + K M  EK ++ +      + Q L KA +   +EEL++K
Sbjct: 463 RVLISTFCGIGHWNNAYSFFKEMIEEKCLRPSLPVYEMVLQQLRKAGQLKKHEELVEK 520


>gi|334183891|ref|NP_177483.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806278|sp|Q9FX35.2|PP117_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g73400, mitochondrial; Flags: Precursor
 gi|332197336|gb|AEE35457.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 568

 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 110/411 (26%), Positives = 178/411 (43%), Gaps = 21/411 (5%)

Query: 54  VEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLG- 112
           +E  LD++ + ++   V ++L+        A +FF W+ +Q +  H P A+N ++D+L  
Sbjct: 112 MEKALDESSVDLTTPVVCKILQRLQYEEKTAFRFFTWAGHQEHYSHEPIAYNEMIDILSS 171

Query: 113 ---KNCLFDAMWDAIKSMKKEN--VLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCK 167
              KN  F  + D +  MK+ N  V+ +     +   Y   +R    +  F   ++   K
Sbjct: 172 TKYKNKQFRIVIDMLDYMKRNNKTVVLVDVLLEILRKY--CERYLTHVQKFAKRKRIRVK 229

Query: 168 H--DVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKK 225
              ++ A N LL A+C+ G   +    LR +  R+KPD +T+ +L  GW + RD   A K
Sbjct: 230 TQPEINAFNMLLDALCKCGLVKEGEALLRRMRHRVKPDANTFNVLFFGWCRVRDPKKAMK 289

Query: 226 TFGEMVIEVGWDPDNVPAYDSYLITLLKGCDG--IYETVNSLKRMMERGCN---PGMTFF 280
              EM IE G  P+N     +Y   +   C    + E  +    M+ +G     P    F
Sbjct: 290 LLEEM-IEAGHKPENF----TYCAAIDTFCQAGMVDEAADLFDFMITKGSAVSAPTAKTF 344

Query: 281 KLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMV 340
            L                + G M+   G  PD   Y  +I   C + +   A K LDEM 
Sbjct: 345 ALMIVALAKNDKAEECFELIGRMIS-TGCLPDVSTYKDVIEGMCMAEKVDEAYKFLDEMS 403

Query: 341 YNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPY 400
             G  PDI TYN     L + RK  EA  L+  MV++    + +     + ++ + DDP 
Sbjct: 404 NKGYPPDIVTYNCFLRVLCENRKTDEALKLYGRMVESRCAPSVQTYNMLISMFFEMDDPD 463

Query: 401 VAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQV 451
            A   W  M +  C    ET   ++ GL D H   EA    + +  KG+++
Sbjct: 464 GAFNTWTEMDKRDCVQDVETYCAMINGLFDCHRAKEACFLLEEVVNKGLKL 514


>gi|11120809|gb|AAG30989.1|AC012396_25 hypothetical protein [Arabidopsis thaliana]
          Length = 466

 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 110/411 (26%), Positives = 178/411 (43%), Gaps = 21/411 (5%)

Query: 54  VEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLG- 112
           +E  LD++ + ++   V ++L+        A +FF W+ +Q +  H P A+N ++D+L  
Sbjct: 10  MEKALDESSVDLTTPVVCKILQRLQYEEKTAFRFFTWAGHQEHYSHEPIAYNEMIDILSS 69

Query: 113 ---KNCLFDAMWDAIKSMKKEN--VLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCK 167
              KN  F  + D +  MK+ N  V+ +     +   Y   +R    +  F   ++   K
Sbjct: 70  TKYKNKQFRIVIDMLDYMKRNNKTVVLVDVLLEILRKY--CERYLTHVQKFAKRKRIRVK 127

Query: 168 H--DVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKK 225
              ++ A N LL A+C+ G   +    LR +  R+KPD +T+ +L  GW + RD   A K
Sbjct: 128 TQPEINAFNMLLDALCKCGLVKEGEALLRRMRHRVKPDANTFNVLFFGWCRVRDPKKAMK 187

Query: 226 TFGEMVIEVGWDPDNVPAYDSYLITLLKGCDG--IYETVNSLKRMMERGCN---PGMTFF 280
              EM IE G  P+N     +Y   +   C    + E  +    M+ +G     P    F
Sbjct: 188 LLEEM-IEAGHKPENF----TYCAAIDTFCQAGMVDEAADLFDFMITKGSAVSAPTAKTF 242

Query: 281 KLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMV 340
            L                + G M+   G  PD   Y  +I   C + +   A K LDEM 
Sbjct: 243 ALMIVALAKNDKAEECFELIGRMIS-TGCLPDVSTYKDVIEGMCMAEKVDEAYKFLDEMS 301

Query: 341 YNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPY 400
             G  PDI TYN     L + RK  EA  L+  MV++    + +     + ++ + DDP 
Sbjct: 302 NKGYPPDIVTYNCFLRVLCENRKTDEALKLYGRMVESRCAPSVQTYNMLISMFFEMDDPD 361

Query: 401 VAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQV 451
            A   W  M +  C    ET   ++ GL D H   EA    + +  KG+++
Sbjct: 362 GAFNTWTEMDKRDCVQDVETYCAMINGLFDCHRAKEACFLLEEVVNKGLKL 412



 Score = 47.4 bits (111), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 47/229 (20%), Positives = 91/229 (39%), Gaps = 7/229 (3%)

Query: 245 DSYLITLLKGCDGIYETVNSL--KRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGA 302
           D  L  L K C+     V     ++ +     P +  F +  +       ++  E +   
Sbjct: 98  DVLLEILRKYCERYLTHVQKFAKRKRIRVKTQPEINAFNMLLDALCKCGLVKEGEALLRR 157

Query: 303 MVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGR 362
           M  R+  +PD + +N++   +C   +   AMKLL+EM+  G  P+  TY    +   +  
Sbjct: 158 MRHRV--KPDANTFNVLFFGWCRVRDPKKAMKLLEEMIEAGHKPENFTYCAAIDTFCQAG 215

Query: 363 KLWEASGLFNEMVKNENVLNHENCRA---AVRVYMDSDDPYVAIKFWKYMIENHCSDLSE 419
            + EA+ LF+ M+   + ++    +     +     +D      +    MI   C     
Sbjct: 216 MVDEAADLFDFMITKGSAVSAPTAKTFALMIVALAKNDKAEECFELIGRMISTGCLPDVS 275

Query: 420 TGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARK 468
           T   ++ G+C    + EA K+   M+ KG        +   ++L + RK
Sbjct: 276 TYKDVIEGMCMAEKVDEAYKFLDEMSNKGYPPDIVTYNCFLRVLCENRK 324


>gi|224093900|ref|XP_002310039.1| predicted protein [Populus trichocarpa]
 gi|222852942|gb|EEE90489.1| predicted protein [Populus trichocarpa]
          Length = 507

 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 109/447 (24%), Positives = 205/447 (45%), Gaps = 15/447 (3%)

Query: 39  IKTLCEIIAN-TPSPTVEDVLDKTLIRVSQETVEQVLK---FSYSHPGPAVKFFRWSAYQ 94
           +  +  II+N T S  ++  L  T + +S + +++VLK   FS+ +P  A+ FF ++A +
Sbjct: 43  VDAIYNIISNSTSSQNLKQSLKSTGVFLSNDLIDKVLKRVRFSHGNPLQALDFFNFTADR 102

Query: 95  LNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKE--NVLSLATFASVFSSYVVADRVK 152
               HS Y+ + ++ +LG++  FD +WD +  +K++  N+++  T   V         V+
Sbjct: 103 RGFYHSSYSLDTMLYILGRSRKFDHIWDVLIDIKRKDRNLITPRTLQVVLGRVAKVCSVR 162

Query: 153 DAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLE 212
             + +F   ++     D    N+LL  +C++    DA      +    +P+  T+ ILL 
Sbjct: 163 MTVESFWKFKRLVPVFDTSCFNALLRTLCQEKSMSDARNVYHHLKKGFRPNLQTFNILLS 222

Query: 213 GWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERG 272
           GW+   +     + F E + E+G  PD +  Y+S +    KG + + +    + RM E  
Sbjct: 223 GWKSSEEA----ELFYEEMKELGVKPD-IVTYNSLIDVFCKGRE-LEKAYGVVARMREED 276

Query: 273 CNPG-MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGA 331
             P  +T+  +     L GQ  +  + +    +   G  PD   YN +I  YC +    A
Sbjct: 277 ILPDVITYTSIIGGLGLVGQPDKARDML--KEMKEHGCYPDVAAYNAVIRNYCIAKRLDA 334

Query: 332 AMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVR 391
           A  L+ EM   G  P+  +YN+ F        L  +   +  M+    + N ++C   ++
Sbjct: 335 AYSLMAEMESKGMSPNATSYNLFFRVFSWSNDLRNSWDFYGRMMDAGCLPNTQSCMFLIK 394

Query: 392 VYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQV 451
           ++   +   +A++ W  M+E          ++L+  LCDM  L EA K    M EKG + 
Sbjct: 395 LFKRHEKVEMALQLWNDMVEKGFGSYILVSDVLLGMLCDMGKLVEAEKCFLQMVEKGHKP 454

Query: 452 TPFALSKLKQILIKARKEAVYEELLKK 478
           +  +  ++K ++  A K      L +K
Sbjct: 455 SNVSFRRIKVLMELANKHDAIRNLSEK 481


>gi|15219049|ref|NP_175673.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207559|sp|Q9SSR6.1|PPR78_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g52640, mitochondrial; Flags: Precursor
 gi|5903042|gb|AAD55601.1|AC008016_11 Contains 2 PF|01535 DUF domains [Arabidopsis thaliana]
 gi|45773940|gb|AAS76774.1| At1g52640 [Arabidopsis thaliana]
 gi|62320530|dbj|BAD95108.1| hypothetical protein [Arabidopsis thaliana]
 gi|332194712|gb|AEE32833.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 523

 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 118/449 (26%), Positives = 207/449 (46%), Gaps = 18/449 (4%)

Query: 26  FASHLDVPNLPPTIKTLCEIIANTPSPTVEDVLDKTLI----RVSQETVEQVLKFSYSHP 81
           F++ L  P  P  +  +  ++++  +P  +D L+ TL+    RVS   VEQVLK   +  
Sbjct: 25  FSTLLHDPPSPDLVNEISRVLSDHRNP--KDDLEHTLVAYSPRVSSNLVEQVLKRCKNLG 82

Query: 82  GPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLAT--FA 139
            PA +FF W+    +  HS  +++++V++LG +  F  +WD +   ++ N   +++  F 
Sbjct: 83  FPAHRFFLWARRIPDFAHSLESYHILVEILGSSKQFALLWDFLIEAREYNYFEISSKVFW 142

Query: 140 SVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDG- 198
            VF +Y  A+   +A   F+ M ++G K  V  L+ LL ++C       A +F     G 
Sbjct: 143 IVFRAYSRANLPSEACRAFNRMVEFGIKPCVDDLDQLLHSLCDKKHVNHAQEFFGKAKGF 202

Query: 199 RIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG--CD 256
            I P   TY+IL+ GW + RD + A+K F EM +E     D + AY++ L  L K    D
Sbjct: 203 GIVPSAKTYSILVRGWARIRDASGARKVFDEM-LERNCVVD-LLAYNALLDALCKSGDVD 260

Query: 257 GIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMY 316
           G Y+     + M   G  P    F +         ++  A  +   M  R    P+ + +
Sbjct: 261 GGYKM---FQEMGNLGLKPDAYSFAIFIHAYCDAGDVHSAYKVLDRM-KRYDLVPNVYTF 316

Query: 317 NMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK 376
           N +I   C + +   A  LLDEM+  GA PD  TYN +  +     ++  A+ L + M +
Sbjct: 317 NHIIKTLCKNEKVDDAYLLLDEMIQKGANPDTWTYNSIMAYHCDHCEVNRATKLLSRMDR 376

Query: 377 NENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMH-MLP 435
            + + +       +++ +       A + W+ M E        T  +++ GL      L 
Sbjct: 377 TKCLPDRHTYNMVLKLLIRIGRFDRATEIWEGMSERKFYPTVATYTVMIHGLVRKKGKLE 436

Query: 436 EAVKYAKGMAEKGIQVTPFALSKLKQILI 464
           EA +Y + M ++GI      +  L+  L+
Sbjct: 437 EACRYFEMMIDEGIPPYSTTVEMLRNRLV 465


>gi|225443015|ref|XP_002267278.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640,
           mitochondrial-like [Vitis vinifera]
          Length = 624

 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 120/449 (26%), Positives = 196/449 (43%), Gaps = 15/449 (3%)

Query: 10  HDDPSPDPHNKRKRSTFASHLDVPNLPPT--IKTLCEIIANTPSPTVEDVLDKTLIRVSQ 67
           H   SP  H+ R  S+     D  +L  +  I  +  I+++   P  +  L++ L   SQ
Sbjct: 19  HSLSSPKTHHSRLFSSQTILQDPNSLSSSQYINEISRILSDFRDPHHD--LERPLTAFSQ 76

Query: 68  ET----VEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDA 123
           +     VEQVLK   +    A +FF W+      +HS  +++++VD+LG +  F  +WD 
Sbjct: 77  KITPGLVEQVLKRCKNLGFSAHRFFLWAKRLPGFEHSKESYHILVDILGSSKQFPLIWDF 136

Query: 124 IKSMKKENVLSLA--TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAIC 181
           +  M++     +    F  +F +Y  A+   DAI  F  M  +G K  V  ++ LL  +C
Sbjct: 137 LSDMRETRCCEICPEIFWLIFRAYCRANLPGDAIRAFHQMGDFGVKAGVGDVDQLLYVLC 196

Query: 182 RDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNV 241
           +      A +F   V+  + P+  TY+IL+ GW    D + A+K F EM  E G   D V
Sbjct: 197 KRKHVKQAQEFFDKVNVEVMPNAKTYSILMRGWGDVGDSSEARKLFEEMR-ERGCAVD-V 254

Query: 242 PAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWG 301
            AY+S L  L KG   + E     + M   G  P    + +         ++  A  +  
Sbjct: 255 VAYNSLLEALCKG-GNVDEAYKLFREMGSNGLAPDACSYSIFIRAYCEVNDIHSAFQVLD 313

Query: 302 AMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKG 361
            M  R    P+   YN ++   C S +   A +LLDEM+  G  PD+ +YN +  F    
Sbjct: 314 RM-RRYNLVPNVFTYNCIVKKLCKSEKVDEAYQLLDEMIERGVSPDLWSYNAIQAFHCDH 372

Query: 362 RKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETG 421
            ++ +A  L + M K   + +       +++ +           W  M E      + T 
Sbjct: 373 CEVNKALRLISRMEKENCMPDRHTYNMVLKMLLRVGRFDRVTDVWGGMEERGFYPAASTY 432

Query: 422 NLLVAGLCDMH-MLPEAVKYAKGMAEKGI 449
            ++V G C     L EA KY + M + GI
Sbjct: 433 AVMVHGFCKKKGKLEEACKYFEMMIDDGI 461



 Score = 40.0 bits (92), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 47/197 (23%), Positives = 83/197 (42%), Gaps = 26/197 (13%)

Query: 91  SAYQLNDKHSPYAWNLVVDLLGKNCLF---------DAMWDAIKSMKKENVL-SLATFAS 140
           SA+Q+ D+   Y  NLV ++   NC+          D  +  +  M +  V   L ++ +
Sbjct: 307 SAFQVLDRMRRY--NLVPNVFTYNCIVKKLCKSEKVDEAYQLLDEMIERGVSPDLWSYNA 364

Query: 141 VFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGK---TIDAWQFLRVVD 197
           + + +     V  A+     ME+  C  D    N +L  + R G+     D W  +   +
Sbjct: 365 IQAFHCDHCEVNKALRLISRMEKENCMPDRHTYNMVLKMLLRVGRFDRVTDVWGGME--E 422

Query: 198 GRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG--- 254
               P   TYA+++ G+ K++        + EM+I+     D +P Y S  + LL+    
Sbjct: 423 RGFYPAASTYAVMVHGFCKKKGKLEEACKYFEMMID-----DGIPPY-SCTVELLRNRVI 476

Query: 255 CDGIYETVNSLKRMMER 271
             G  E ++ L   MER
Sbjct: 477 GLGFSEQIDVLAGKMER 493


>gi|226509960|ref|NP_001150456.1| LOC100284086 [Zea mays]
 gi|195639404|gb|ACG39170.1| ATP binding protein [Zea mays]
          Length = 634

 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 114/454 (25%), Positives = 200/454 (44%), Gaps = 17/454 (3%)

Query: 36  PPTIKTLCEIIANTPSPTVEDVLDKTLIRVSQETVEQVL-----KFSYSHPGPAVKFFRW 90
           P  +  +C  IA+  +   +  L+  L  +S    E V+     +F ++H  P+ +FFRW
Sbjct: 159 PEGVDRVCAAIADVVASGADANLEAALSALSPPLCEAVVLAVLHRFKHAH-RPSYRFFRW 217

Query: 91  SAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADR 150
           +       H+   +  ++ +LGK   F++M   I+ M K   LS+  F     S+  A  
Sbjct: 218 ATVSGGFTHTTITYCKMLHILGKTRQFESMVAMIQEMGKAGALSMDAFKVAIKSFAAAGE 277

Query: 151 VKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAIL 210
           +K+A+  F++M + G    V + N LL A+ ++G   +A Q    + G+  PD  +Y  L
Sbjct: 278 IKNAVGVFELMRKNGFDDGVESFNCLLVALAKEGLGREARQVFDKMHGQYSPDLRSYTAL 337

Query: 211 LEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMME 270
           +  W   R++  A + + EM +E G DPD V  +++ +  LL+G     E V   + M  
Sbjct: 338 MLAWCNARNLVEAGRVWNEM-LEKGMDPDVV-VHNTMIEGLLRG-QRRPEAVKMFELMKA 394

Query: 271 RGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNET 329
           +G  P + T+  L  + C  G+     E        +   +PD   Y  ++  Y  + + 
Sbjct: 395 KGPPPNVWTYTMLIRDHCKQGKMDMAMECFEEMQEAKC--QPDVATYTCLLVGYGNAKQM 452

Query: 330 GAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAA 389
                +L+EM   G  PD +TYN L + L       +A+ ++ +M+K             
Sbjct: 453 DRVTAVLEEMTQKGCPPDARTYNALIKLLTNRNMPDDAARIYKKMIKKGLEPTIHTYNMM 512

Query: 390 VRVYMDSDDPY-VAIKFWKYMIENH-CSDLSETGNLLVAGLCDMHMLP-EAVKYAKGMAE 446
           ++ Y   D  Y +    W+ M +   C D++     +   +   H  P EA KY + M  
Sbjct: 513 MKSYFVGDSNYAMGCAVWEEMHQRGICPDVNSYTVFINRHI--RHGRPEEAYKYIEEMIN 570

Query: 447 KGIQVTPFALSKLKQILIKARKEAVYEELLKKCK 480
           KG++      +K      KA K  +  EL +K K
Sbjct: 571 KGMKAPQIDYNKFAADFSKAGKPDILFELAQKVK 604


>gi|449469288|ref|XP_004152353.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640,
           mitochondrial-like [Cucumis sativus]
          Length = 529

 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 114/420 (27%), Positives = 189/420 (45%), Gaps = 56/420 (13%)

Query: 19  NKRKRSTFASHLDV---PNLPPTIKTLCEIIANTPSP--TVEDVLDKTLIRVSQETVEQV 73
           ++R  ++FA+       P LP  +  +  I+++  +P   +E  L      VS + VEQV
Sbjct: 28  HQRSFTSFATEARAGSDPTLPFLVSEISRILSDRRNPHHDLEVGLSSFSSNVSTDLVEQV 87

Query: 74  LKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMK--KEN 131
           LK   +    A +FF W+      + S  ++++VVD+LG +  F  +WD +  ++  + +
Sbjct: 88  LKRCKNIAFSAHRFFLWAKRIPGFEPSDDSYHIVVDILGSSGQFAILWDFLIEIRETRSS 147

Query: 132 VLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ 191
           V++   F  VF++Y  AD  +DAI  F+ M ++G +  V  L+ LL  +C+      A Q
Sbjct: 148 VITHELFWHVFTAYSRADLPQDAIRAFNRMGEFGIRAGVDDLDKLLYTLCKRKHVAHAQQ 207

Query: 192 FLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEM-----VIEV------------ 234
           F   V     P   TY+IL  GW    D  NA+K F EM     +I+V            
Sbjct: 208 FFDKVKSVFNPSVKTYSILTRGWGVVGDSNNAQKVFDEMRERGCLIDVLAYNSLLEALCK 267

Query: 235 -----------------GWDPDNVPAYDSYLITLLKGC--DGIYETVNSLKRMMERGCNP 275
                            G DPD     D+Y I +   C  + ++     L+R   +   P
Sbjct: 268 GGKRDEAYKMFLEMDSNGVDPDA----DTYSIFIRSSCQENDLHTVYRVLERTKRKNLLP 323

Query: 276 GMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKL 335
            +  +    ++    QN+  A  I   M+ R G  PDT  YN + + +C  +E  +A+ L
Sbjct: 324 NVFTYNCVIKKLCKDQNVEEAYQILDEMIER-GVTPDTWSYNAIQAYHCDHSEVNSALNL 382

Query: 336 LDEMVYNGAFPDIQTYNILFEFLVK-GR-----KLWEASGL--FNEMVKNENVLNHENCR 387
           +  M  +   PD  TYN++ + LV+ GR     ++WE+ G   F   V    V+ H  C+
Sbjct: 383 VKRMDRDKCVPDKHTYNMVLKLLVRVGRFDRANEVWESMGKRGFYPSVSTYAVMIHGFCK 442


>gi|147767652|emb|CAN77908.1| hypothetical protein VITISV_033177 [Vitis vinifera]
          Length = 1563

 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 121/450 (26%), Positives = 204/450 (45%), Gaps = 16/450 (3%)

Query: 33   PNLPPTIKTLCEIIANTPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGP-AVKFFRWS 91
            PN   TI +L    +   S    D +   ++R     +E+     +  P P  + FF W+
Sbjct: 1115 PNPHYTIASLSFDFSQISSA---DSVSSAIVR---RVIEKCGGVRHGIPFPQTLAFFNWA 1168

Query: 92   AYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASVFSSYVVADR 150
                   HSP  +  ++DL GK   FD  W  I  MK  NV + + TF  +   YV A  
Sbjct: 1169 TNLEEFGHSPEPYMEMIDLAGKVRQFDLAWQLIDLMKTRNVEIPVETFTILVRRYVKAGL 1228

Query: 151  VKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAIL 210
              +A+  F+ ME YGCK D  A + ++S++ +  + I+A  F   +  R +PD   Y  L
Sbjct: 1229 AAEAVHAFNRMEDYGCKPDKIAFSVVISSLSKKRRAIEAQSFFDSLKDRFEPDVVVYTSL 1288

Query: 211  LEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMME 270
            + GW +  +++ A++ FGEM +  G  P NV  Y S +I  L     I    +    M++
Sbjct: 1289 VHGWCRAGNISEAERVFGEMKM-AGIXP-NVYTY-SIVIDALCRSGQITRAHDVFSEMID 1345

Query: 271  RGCNP-GMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNET 329
             GC+P  +TF  L       G+  +  + ++  M  R+G  PD   YN +I  +C  +  
Sbjct: 1346 VGCDPNAITFNNLMRVHVKAGRTEKVLQ-VYNQM-KRLGCPPDAITYNFLIESHCRDDNL 1403

Query: 330  GAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAA 389
              A+K+L+  V  G   +  ++N +F  + K   +  A  +F +M   +   N       
Sbjct: 1404 EEAVKILNS-VKKGCNLNASSFNPIFGCISKLGDVNSAHRMFAKMKDLKCRPNTVTYNIL 1462

Query: 390  VRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGM-AEKG 448
            +R++ D     + +K  K M EN     + T  +L++  C +     A  + K M  EK 
Sbjct: 1463 MRMFADKKSTDMVLKLRKEMDENEIEPNANTYRVLISTFCGIGHWNNAYSFFKEMIEEKC 1522

Query: 449  IQVTPFALSKLKQILIKARKEAVYEELLKK 478
            ++ +      + Q L KA +   +EEL++K
Sbjct: 1523 LRPSLPVYEMVLQQLRKAGQLKKHEELVEK 1552


>gi|224128340|ref|XP_002320305.1| predicted protein [Populus trichocarpa]
 gi|222861078|gb|EEE98620.1| predicted protein [Populus trichocarpa]
          Length = 540

 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 113/481 (23%), Positives = 216/481 (44%), Gaps = 14/481 (2%)

Query: 2   ARNDKRRHHDDPSPDPHNKRKRSTFASHLDVPNLPPTIKTLCEIIAN--TPSPTVEDVLD 59
           A ND+    +D S +   + K +   S  D    P  +  +C++I         +E VLD
Sbjct: 47  AENDE----NDESDNCERENKGAIVKSTAD----PAEVHKVCKVIDELFALDHNMEAVLD 98

Query: 60  KTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDA 119
           +  I +S + V +VL+       PA +FF W+A +    H    ++ ++ +L K   F+ 
Sbjct: 99  ECGINLSHDLVIEVLERFRHARKPAFRFFCWAAEKPGFVHDSRTYHSMMIILAKARQFET 158

Query: 120 MWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSA 179
           M   ++ M ++ +L+L TF+    ++  A   K A+  F++M+ +  +  V  +N+LL +
Sbjct: 159 MMSMLEEMGEKRLLTLDTFSIAMRAFAAAKERKKAVGIFELMKNHKYRVGVETINALLDS 218

Query: 180 ICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPD 239
           + R     +A      ++GR  P+  TY +LL GW + +++  A + + EM+ E G+ PD
Sbjct: 219 LGRAKLGKEAQALFGKLEGRFTPNLRTYTVLLNGWCRVKNLMEAGRIWNEMLDE-GFKPD 277

Query: 240 NVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFI 299
            +  ++  L  LL+      + +   + M  +G +P +  + +   +      ++ A   
Sbjct: 278 -IVTHNIMLEGLLRS-KKRSDAIKFFEVMKAKGPSPDVRSYTILIRDLCKQTKMKEAVGY 335

Query: 300 WGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLV 359
           +  MV   G  PD  +Y  +++ Y          +LL EM   G  PD +TYN L + + 
Sbjct: 336 FYEMVDS-GCHPDAAVYTCLMTGYGNHKRMDMVYELLKEMKEKGCPPDGKTYNALIKLMT 394

Query: 360 KGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSE 419
             R   +A  ++ +M++N    +  +    ++ Y    +  +    W  M +        
Sbjct: 395 SQRMPDDAVRIYKKMIQNGIEPSIHSYNMIMKSYFRIRNYEMGHAVWDEMSKKGFCPDDN 454

Query: 420 TGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKC 479
           +  + + GL       EA KY + M EKG++      +K      +A K  + EEL +K 
Sbjct: 455 SYTVFIGGLISQGRSEEACKYLEEMIEKGMKAPQLDYNKFAADFSRAGKPDILEELAQKM 514

Query: 480 K 480
           K
Sbjct: 515 K 515


>gi|297853022|ref|XP_002894392.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297340234|gb|EFH70651.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 525

 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 117/449 (26%), Positives = 205/449 (45%), Gaps = 18/449 (4%)

Query: 26  FASHLDVPNLPPTIKTLCEIIANTPSPTVEDVLDKTLI----RVSQETVEQVLKFSYSHP 81
           F++ L  P  P  +  +  ++++  +P  +D L+ TL     RVS   VEQVLK   +  
Sbjct: 25  FSTLLHDPPSPELVNEISRVLSDHRNP--KDDLEHTLAAYSPRVSSNLVEQVLKRCKNLG 82

Query: 82  GPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLAT--FA 139
            PA +FF W+    + +HS  +++++V++LG +  F  +WD +   ++ N   + +  F 
Sbjct: 83  FPAHRFFLWAKRIPDFEHSLESYHILVEILGCSKQFALLWDFLIEAREYNYFEITSKVFW 142

Query: 140 SVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDG- 198
            VF +Y  A+   +A   F+ M ++G K  V  L+ LL ++C       A +F     G 
Sbjct: 143 IVFRAYSRANLPSEASRAFNRMVEFGIKPCVDDLDQLLHSLCDRKHVNHAQEFFDKAKGF 202

Query: 199 RIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG--CD 256
            I P   TY+IL+ GW + RD + A+K F EM +E     D + AY++ L  L K    D
Sbjct: 203 GIVPSAKTYSILVRGWARIRDASGARKVFDEM-LENNCVVD-LLAYNALLDALCKSGDVD 260

Query: 257 GIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMY 316
           G Y+     + M   G  P    F +         ++  A  +   M  R    P+ + +
Sbjct: 261 GAYKM---FQEMGNLGLKPDAYSFAIFIHSYCDASDVHSAYQVLDRM-KRYDLVPNVYTF 316

Query: 317 NMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK 376
           N +I   C + +   A  LLDEM+  GA PD  TYN +  +     ++  A+ L + M +
Sbjct: 317 NHIIKTLCKNEKVDDAYLLLDEMIQKGANPDTWTYNSIMAYHCDHCEVNRATKLLSRMDR 376

Query: 377 NENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMH-MLP 435
            + + +       +++ +         + W+ M E        T  +++ GL      L 
Sbjct: 377 TKCLPDRHTYNMVLKLLIRIGRFDRVTEIWEGMSERKFYPTVATYTVMIHGLVRKKGKLE 436

Query: 436 EAVKYAKGMAEKGIQVTPFALSKLKQILI 464
           EA +Y + M ++GI      +  L+  L+
Sbjct: 437 EACRYFEMMIDEGIPPYSTTVEMLRNRLV 465


>gi|449484422|ref|XP_004156879.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640,
           mitochondrial-like [Cucumis sativus]
          Length = 529

 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 114/420 (27%), Positives = 189/420 (45%), Gaps = 56/420 (13%)

Query: 19  NKRKRSTFASHLDV---PNLPPTIKTLCEIIANTPSP--TVEDVLDKTLIRVSQETVEQV 73
           ++R  ++FA+       P LP  +  +  I+++  +P   +E  L      VS + VEQV
Sbjct: 28  HQRSFTSFATEARAGSDPTLPFLVSEISRILSDRRNPHHDLEVGLSSFSSNVSTDLVEQV 87

Query: 74  LKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMK--KEN 131
           LK   +    A +FF W+      + S  ++++VVD+LG +  F  +WD +  ++  + +
Sbjct: 88  LKRCKNIAFSAHRFFLWAKRIPGFEPSDDSYHIVVDILGGSGQFAILWDFLIEIRETRSS 147

Query: 132 VLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ 191
           V++   F  VF++Y  AD  +DAI  F+ M ++G +  V  L+ LL  +C+      A Q
Sbjct: 148 VITHELFWHVFTAYSRADLPQDAIRAFNRMGEFGIRAGVDDLDKLLYTLCKRKHVAHAQQ 207

Query: 192 FLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEM-----VIEV------------ 234
           F   V     P   TY+IL  GW    D  NA+K F EM     +I+V            
Sbjct: 208 FFDKVKSVFNPSVKTYSILTRGWGVVGDSNNAQKVFDEMRERGCLIDVLAYNSLLEALCK 267

Query: 235 -----------------GWDPDNVPAYDSYLITLLKGC--DGIYETVNSLKRMMERGCNP 275
                            G DPD     D+Y I +   C  + ++     L+R   +   P
Sbjct: 268 GGKRDEAYKMFLEMDSNGVDPDA----DTYSIFIRSSCQENDLHTVYRVLERTKRKNLLP 323

Query: 276 GMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKL 335
            +  +    ++    QN+  A  I   M+ R G  PDT  YN + + +C  +E  +A+ L
Sbjct: 324 NVFTYNCVIKKLCKDQNVEEAYQILDEMIER-GVTPDTWSYNAIQAYHCDHSEVNSALNL 382

Query: 336 LDEMVYNGAFPDIQTYNILFEFLVK-GR-----KLWEASGL--FNEMVKNENVLNHENCR 387
           +  M  +   PD  TYN++ + LV+ GR     ++WE+ G   F   V    V+ H  C+
Sbjct: 383 VKRMDRDKCVPDKHTYNMVLKLLVRVGRFDRANEVWESMGKRGFYPSVSTYAVMIHGFCK 442


>gi|413949009|gb|AFW81658.1| hypothetical protein ZEAMMB73_233967 [Zea mays]
          Length = 637

 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 113/453 (24%), Positives = 198/453 (43%), Gaps = 15/453 (3%)

Query: 36  PPTIKTLCEIIANTPSPTVEDVLDKTLIRVSQETVEQVL-----KFSYSHPGPAVKFFRW 90
           P  +  +C  IA+  +   +  L+  L  +S    E V+     +F ++H  P+ +FFRW
Sbjct: 157 PEGVGRVCAAIADVIAAGADANLEAALSALSPPLCEAVVLAVLHRFKHAH-RPSYRFFRW 215

Query: 91  SAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADR 150
           +       H+   +  ++ +LGK   F++M   ++ M K   LS+  F     S+  A  
Sbjct: 216 ATASGGFTHTTITYCKMLLILGKTRQFESMVALLQEMGKAGTLSMDAFKVAIKSFAAAGE 275

Query: 151 VKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAIL 210
           +K+A+  F++M + G    V + N LL A+  +G   +A Q    + G+  PD  +Y  L
Sbjct: 276 IKNAVGVFELMRKNGFDDGVESFNCLLVALANEGLGREARQVFDKMLGQYSPDLRSYTAL 335

Query: 211 LEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMME 270
           +  W   R++  A + + EM +E G  PD V  +++ +  LL+G    +E V   + M  
Sbjct: 336 MLAWCNARNLVEAGRVWNEM-LEKGMKPDVV-VHNTMIEGLLRG-QRQHEAVKMFELMKA 392

Query: 271 RGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNET 329
           +G  P + T+  L    C  G+     E        R   +PD   Y  ++  Y  +   
Sbjct: 393 KGPPPNVWTYTMLICNHCKRGKMDMAMECFEEMQEARC--QPDVATYTCLLVGYGNAKRM 450

Query: 330 GAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAA 389
                +L+EM   G  PD +TYN L + L   +   +A+ ++ +M+K             
Sbjct: 451 DRVTAVLEEMTQKGCPPDARTYNALIKLLTNRKMPDDAARIYKKMIKKGLDPTIHTYNMM 510

Query: 390 VRVYMDSDDPY-VAIKFWKYMIENH-CSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEK 447
           ++ Y   D  Y +    W+ M     C D++    + ++G        EA KY + M  K
Sbjct: 511 MKSYFLGDRNYAMGCAVWEEMHRRGICPDVNSY-TVFISGHIRHGRPEEAYKYIEEMINK 569

Query: 448 GIQVTPFALSKLKQILIKARKEAVYEELLKKCK 480
           G++      +K    L KA K  +  EL +K K
Sbjct: 570 GMKAPQIDCNKFAADLSKAGKLDMLYELAQKVK 602


>gi|357520891|ref|XP_003630734.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524756|gb|AET05210.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 520

 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 111/441 (25%), Positives = 197/441 (44%), Gaps = 10/441 (2%)

Query: 15  PDPHNKRKRSTFASHLDVPNLPPTIKTLCEIIANTPSPT--VEDVLDKTLIRVSQETVEQ 72
           P   +K   S     + VP LP  +  +  I+++   P   +E  L     ++S + VEQ
Sbjct: 19  PLVQHKFIHSFPTQQISVPLLPELVNEISRIVSDHRHPRHDLELSLTPFSTQISTDLVEQ 78

Query: 73  VLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENV 132
           VLK        A +FF W+      +HS  +++++V++LG++  F  +WD +   ++ + 
Sbjct: 79  VLKRCNHLGFSAHRFFLWAKSIPGFQHSVQSFHILVEILGRSKQFAILWDFLIETRESDS 138

Query: 133 ---LSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDA 189
              ++   F  +F++Y  AD    AI +F  M+++G K  +  ++ LL  +C+      A
Sbjct: 139 SCKITNEIFWIIFTAYSRADLPDGAIRSFVRMDEFGIKPSIIDVDLLLYTLCKKKHVRQA 198

Query: 190 WQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLI 249
            QF   V         TY+IL+ GW K  D   A++ F  M +E G   D + AY++ L 
Sbjct: 199 QQFFDQVKSHFLLTTKTYSILINGWGKIGDSGKARELFDAM-LEQGCHVD-LLAYNNLLE 256

Query: 250 TLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGF 309
            L KG   + E ++ L  M+ +   P    + +         N+  A  +   M  R   
Sbjct: 257 ALCKG-GHVDEAMDFLNDMLSKKVEPDAFTYSIFIRSYCDANNVHSAFGVLDKM-RRCNL 314

Query: 310 RPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASG 369
            P+   YN +I   C   +   A +LLDEM+ +G  PD  +YN +  +     ++  A  
Sbjct: 315 LPNVFTYNCIIKRLCKIKKVEEAYQLLDEMISSGLKPDTWSYNAIQAYHCDHCEVNRALK 374

Query: 370 LFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLC 429
           L + M K+    +       +++ +       A + W+ M +        T ++++ GLC
Sbjct: 375 LISRMEKDVCFPDRHTYNMVLKLLIRIGRFDKATEVWECMGDKKFYPSVSTYSVMIHGLC 434

Query: 430 DMH-MLPEAVKYAKGMAEKGI 449
                L EA KY   M ++GI
Sbjct: 435 KKKGKLEEACKYFAMMIDEGI 455


>gi|224149779|ref|XP_002336862.1| predicted protein [Populus trichocarpa]
 gi|222837029|gb|EEE75408.1| predicted protein [Populus trichocarpa]
          Length = 370

 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 98/301 (32%), Positives = 149/301 (49%), Gaps = 19/301 (6%)

Query: 33  PN--LPP----TIKTLCEIIANTPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAV- 85
           PN  LPP    TI +L    + T S TV  +   ++IR     +EQ     +  P P V 
Sbjct: 77  PNKTLPPDPTYTIPSLSLDFSQTIS-TVHSI-SPSIIR---HVIEQSGGVRHGIPVPQVL 131

Query: 86  KFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASVFSS 144
            FF W++YQ     SP A+N +VD  GK  +FD  W  I  MK  +V +++ TF+ +   
Sbjct: 132 AFFNWASYQDGFDKSPEAFNEMVDFAGKVRMFDLAWHVIDLMKARDVEITVETFSILMRR 191

Query: 145 YVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDN 204
           YV A    +AI  F+ ME Y CK D  A + L+S +CR  +  +A +F   +  + +PD 
Sbjct: 192 YVRAGLAAEAIHAFNRMEDYNCKPDKIAFSILISILCRKRRASEAQEFFDSLKDKFEPDV 251

Query: 205 DTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNS 264
             Y  L+ GW +  +++ A++ FGEM +  G  P NV  Y S +I  L  C  I    + 
Sbjct: 252 IVYTNLVRGWCRAGNISEAERVFGEMKV-AGIKP-NVYTY-SIVIDSLCRCGQITRAHDV 308

Query: 265 LKRMMERGCNP-GMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLY 323
              M++ GC P  +T+  L       G+  +  + ++  M  R+G  PDT  YN +I  +
Sbjct: 309 FAEMLDAGCQPNSITYNSLMRIHVKAGRTEKVLQ-VYNQM-KRLGCEPDTVTYNFLIETH 366

Query: 324 C 324
           C
Sbjct: 367 C 367



 Score = 51.6 bits (122), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 33/170 (19%), Positives = 72/170 (42%), Gaps = 2/170 (1%)

Query: 260 ETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMM 319
           E +++  RM +  C P    F +        +    A+  + ++  +  F PD  +Y  +
Sbjct: 200 EAIHAFNRMEDYNCKPDKIAFSILISILCRKRRASEAQEFFDSLKDK--FEPDVIVYTNL 257

Query: 320 ISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNEN 379
           +  +C +     A ++  EM   G  P++ TY+I+ + L +  ++  A  +F EM+    
Sbjct: 258 VRGWCRAGNISEAERVFGEMKVAGIKPNVYTYSIVIDSLCRCGQITRAHDVFAEMLDAGC 317

Query: 380 VLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLC 429
             N     + +R+++ +      ++ +  M    C   + T N L+   C
Sbjct: 318 QPNSITYNSLMRIHVKAGRTEKVLQVYNQMKRLGCEPDTVTYNFLIETHC 367


>gi|255580124|ref|XP_002530894.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223529547|gb|EEF31500.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 519

 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 111/434 (25%), Positives = 190/434 (43%), Gaps = 9/434 (2%)

Query: 36  PPTIKTLCEIIAN--TPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAY 93
           P  +  +  I+++   P   +E  L      +S   VEQVLK   +    A +FF W+  
Sbjct: 41  PDLVNEISRILSDHRNPHHDLELSLTTYSSHISTTLVEQVLKRCKNLGFSAQRFFLWAKR 100

Query: 94  QLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLA--TFASVFSSYVVADRV 151
                HS  +++++VD+LG +  F  +WD +  +++     ++   F  VF +Y  A+  
Sbjct: 101 IPGFDHSKESYHILVDILGSSKQFALLWDFLIEIRESQDFEISPQVFWLVFRAYSRANLP 160

Query: 152 KDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILL 211
            DAI  FD M ++G K  +  L+ LL  +C+      A Q    V  + +    TY+IL+
Sbjct: 161 SDAIRAFDRMVEFGLKPTIDDLDQLLYVLCKRKHAKHAQQIFDRVKHQFQTRAKTYSILV 220

Query: 212 EGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMER 271
            GW    +  +A K F EM  +      +V AY+S L    KG   + E     + M   
Sbjct: 221 RGWGDIGESVSACKVFDEMREQQC--AVDVLAYNSLLEAFCKG-GKVSEAYKMFREMGSN 277

Query: 272 GCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGA 331
           G  P    F +         ++  A  +   M  R    P+   YN MI   C   +   
Sbjct: 278 GIKPDACTFSIFIRAYCEANDIHLAYRVLDEM-KRYDLVPNVFTYNCMIKKLCKKEKVEE 336

Query: 332 AMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVR 391
           A +LL+E++     PD  +YN +  +  +  ++  A+ L + MVK+  + +  +    ++
Sbjct: 337 AYQLLNEIIERSGQPDAWSYNAILAYHCEHSEVNSATRLISRMVKDNCLPDKHSYNMLLK 396

Query: 392 VYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMH-MLPEAVKYAKGMAEKGIQ 450
           + +       AI+ W+ M E        T +++V GLC     L EA KY + M ++GI 
Sbjct: 397 LLIRVGRFDRAIEVWESMGEKGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMIDEGIP 456

Query: 451 VTPFALSKLKQILI 464
                +  L+  LI
Sbjct: 457 PYSSTVEILRNRLI 470


>gi|75194072|sp|Q9S7R4.1|PP125_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g74900, mitochondrial; AltName: Full=Protein
           ORGANELLE TRANSCRIPT PROCESSING DEFECT 43; Flags:
           Precursor
 gi|5882733|gb|AAD55286.1|AC008263_17 Contains a PF|01535 DUF17 domain [Arabidopsis thaliana]
 gi|12323885|gb|AAG51911.1|AC013258_5 hypothetical protein; 69434-67986 [Arabidopsis thaliana]
          Length = 482

 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 109/457 (23%), Positives = 195/457 (42%), Gaps = 26/457 (5%)

Query: 36  PPTIKTLCEIIANTPSPTVED---VLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSA 92
           P     + ++I ++P+ T +D   +L       +   V  VLK  ++H   A++FF +  
Sbjct: 22  PADSAAIAKLILSSPNTTHQDDQFLLSTKTTPWTPNLVNSVLKRLWNHGPKALQFFHF-- 79

Query: 93  YQLNDKHSPY-----AWNLVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASVFSSYV 146
             L++ H  Y     +++L +D+  +  L   +W  I  M+   +  S  TFA V   Y 
Sbjct: 80  --LDNHHREYVHDASSFDLAIDIAARLHLHPTVWSLIHRMRSLRIGPSPKTFAIVAERYA 137

Query: 147 VADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDT 206
            A +   A+  F  M ++GC  D+ + N++L  +C+  +   A++  R + GR   D  T
Sbjct: 138 SAGKPDKAVKLFLNMHEHGCFQDLASFNTILDVLCKSKRVEKAYELFRALRGRFSVDTVT 197

Query: 207 YAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG---CDGIYETVN 263
           Y ++L GW   +    A +   EMV E G +P N+  Y+    T+LKG      I     
Sbjct: 198 YNVILNGWCLIKRTPKALEVLKEMV-ERGINP-NLTTYN----TMLKGFFRAGQIRHAWE 251

Query: 264 SLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLY 323
               M +R C   +  +            ++ A  ++  M+ R G  P    YN MI + 
Sbjct: 252 FFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFDEMI-REGVLPSVATYNAMIQVL 310

Query: 324 CYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNH 383
           C  +    A+ + +EMV  G  P++ TYN+L   L    +      L   M       N 
Sbjct: 311 CKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQRMENEGCEPNF 370

Query: 384 ENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAK- 442
           +     +R Y +  +   A+  ++ M    C    +T N+L++G+       + V   K 
Sbjct: 371 QTYNMMIRYYSECSEVEKALGLFEKMGSGDCLPNLDTYNILISGMFVRKRSEDMVVAGKL 430

Query: 443 --GMAEKGIQVTPFALSKLKQILIKARKEAVYEELLK 477
              M E+G     F  +++   L+    +A  +E+L+
Sbjct: 431 LLEMVERGFIPRKFTFNRVLNGLLLTGNQAFAKEILR 467


>gi|359496995|ref|XP_003635394.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g65820-like [Vitis vinifera]
          Length = 622

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 106/421 (25%), Positives = 178/421 (42%), Gaps = 8/421 (1%)

Query: 52  PTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLL 111
           P +E  L ++ + V     E+VL           +FF W++ Q   +HS   +  ++ +L
Sbjct: 73  PKLELALQESGVAVRSGLTERVLNRCGDAGNLGYRFFVWASKQPGYRHSYEVYKAMIKIL 132

Query: 112 GKNCLFDAMWDAIKSMKKEN--VLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHD 169
           GK   F A+W  I+ M++EN   +S   F  +   +  A  VK AI   D M +YGC+ D
Sbjct: 133 GKMRQFGAVWALIEEMRRENPQFVSPYVFVVLMRRFASARMVKKAIEVLDEMPKYGCEPD 192

Query: 170 VFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGE 229
                 LL A+C++G   +A      +  R  P    +  LL GW +E  +  AK    +
Sbjct: 193 EHVFGCLLDALCKNGSVKEAASLFEDMRIRFTPTLKHFTSLLYGWCREGKLMEAKYVLVQ 252

Query: 230 MVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLT 289
            + E G++PD V  Y++ L+T       + +  + LK M  + C P +  F    +    
Sbjct: 253 -IREAGFEPDIV-VYNN-LLTGYAAAGKMVDAYDLLKEMRRKECEPNVMSFTTLIQALCA 309

Query: 290 GQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQ 349
            + +  A  ++  M    G   D   Y  +IS +C   +     +LLD M+  G  P+  
Sbjct: 310 KKKMEEAMRVFFEMQS-CGCPADAVTYTTLISGFCKWGKISKGYELLDNMIQQGHIPNPM 368

Query: 350 TYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYM 409
           TY  +     K  +L E   L  EM K     +       +R+     +    ++ W  M
Sbjct: 369 TYLHIMAAHEKKEELEECIELMEEMRKIGCTPDLNIYNIVIRLACKLGEIKEGVRVWNEM 428

Query: 410 IENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTP--FALSKLKQILIKAR 467
                S   +T  +++ G      L EA ++ K M  +G+   P    L +L   L++A 
Sbjct: 429 EATGLSPGLDTFVIMIHGFLSQRCLVEACEFFKEMVGRGLLSAPQYGTLKELLNSLLRAE 488

Query: 468 K 468
           K
Sbjct: 489 K 489


>gi|147767159|emb|CAN71515.1| hypothetical protein VITISV_021787 [Vitis vinifera]
          Length = 655

 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 106/421 (25%), Positives = 178/421 (42%), Gaps = 8/421 (1%)

Query: 52  PTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLL 111
           P +E  L ++ + V     E+VL           +FF W++ Q   +HS   +  ++ +L
Sbjct: 106 PKLELALQESGVAVRSGLTERVLNRCGDAGNLGYRFFVWASKQPGYRHSYEVYKAMIKIL 165

Query: 112 GKNCLFDAMWDAIKSMKKEN--VLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHD 169
           GK   F A+W  I+ M++EN   +S   F  +   +  A  VK AI   D M +YGC+ D
Sbjct: 166 GKMRQFGAVWALIEEMRRENPQFVSPYVFVVLMRRFASARMVKKAIEVLDEMPKYGCEPD 225

Query: 170 VFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGE 229
                 LL A+C++G   +A      +  R  P    +  LL GW +E  +  AK    +
Sbjct: 226 EHVFGCLLDALCKNGSVKEAASLFEDMRIRFTPTLKHFTSLLYGWCREGKLMEAKYVLVQ 285

Query: 230 MVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLT 289
            + E G++PD V  Y++ L+T       + +  + LK M  + C P +  F    +    
Sbjct: 286 -IREAGFEPDIV-VYNN-LLTGYAAAGKMVDAYDLLKEMRRKECEPNVMSFTTLIQALCA 342

Query: 290 GQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQ 349
            + +  A  ++  M    G   D   Y  +IS +C   +     +LLD M+  G  P+  
Sbjct: 343 KKKMEEAMRVFFEMQS-CGCPADAVTYTTLISGFCKWGKISKGYELLDNMIQQGHIPNPM 401

Query: 350 TYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYM 409
           TY  +     K  +L E   L  EM K     +       +R+     +    ++ W  M
Sbjct: 402 TYLHIMAAHEKKEELEECIELMEEMRKIGCTPDLNIYNIVIRLACKLGEIKEGVRVWNEM 461

Query: 410 IENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTP--FALSKLKQILIKAR 467
                S   +T  +++ G      L EA ++ K M  +G+   P    L +L   L++A 
Sbjct: 462 EATGLSPGLDTFVIMIHGFLSQRCLVEACEFFKEMVGRGLLSAPQYGTLKELLNSLLRAE 521

Query: 468 K 468
           K
Sbjct: 522 K 522


>gi|255548471|ref|XP_002515292.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545772|gb|EEF47276.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 533

 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 106/448 (23%), Positives = 198/448 (44%), Gaps = 8/448 (1%)

Query: 36  PPTIKTLCEIIAN--TPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAY 93
           P  +  +C++I         +E VLD+  I +S + V  VL+       PA +FF W+  
Sbjct: 62  PVEVDRVCKVIDELFALDRNMEAVLDECGINLSHDLVIDVLERFCHARKPAFRFFCWAGE 121

Query: 94  QLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKD 153
           +   +H    +N ++ +L K   F+ +   ++ M  + VL++ TF+    ++  A   K 
Sbjct: 122 KQGFEHDSRTYNSMMSILAKTRQFETVVSMLEEMGGKGVLTMDTFSIAMRAFAAAKERKK 181

Query: 154 AITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEG 213
           A+  F++M++Y  K  V  +N LL ++ R     +A      + GR  P+  TY +LL G
Sbjct: 182 AVAMFELMKKYNYKVGVETINHLLDSLGRAKLGKEAQALFENLKGRFTPNLRTYTVLLNG 241

Query: 214 WEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGC 273
           W K +++  A   + EM I+ G+ PD + A++  L  LL+      + +     M  +G 
Sbjct: 242 WCKVKNLMEAGSVWNEM-IDKGFKPD-IVAHNIMLEGLLRS-KQRSDAIKLFMVMKAKGP 298

Query: 274 NPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAM 333
           +P +  + +          +  A   +  M+   G +PD  +Y  +I+ +          
Sbjct: 299 SPDVRSYTILIRYLCRQSKMEEAVEYFQEMIDS-GCKPDAAVYTCLITGFGNRKRMDMVY 357

Query: 334 KLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVY 393
            LL EM   G  PD  TYN L + + + +   +A+ ++ +M ++            ++ Y
Sbjct: 358 DLLKEMKEEGCPPDGLTYNALIKLMTRLKMPDDAARIYKKMTQSGIEPTIHTYNMIMKSY 417

Query: 394 MDSDDPYVAIKFWKYMI-ENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVT 452
             + +  +    W  M  +  C D   +  +L+ GL       EA KY + M EKG++  
Sbjct: 418 FQTRNYEMGRAVWDEMSRKGFCPD-DNSYTVLIGGLISQGRSGEACKYLEEMLEKGMKAP 476

Query: 453 PFALSKLKQILIKARKEAVYEELLKKCK 480
               +K    L +     + EEL ++ K
Sbjct: 477 QLDYNKFGADLSRGGNPDILEELAQRLK 504


>gi|356495784|ref|XP_003516753.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
           mitochondrial-like [Glycine max]
          Length = 558

 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 118/421 (28%), Positives = 189/421 (44%), Gaps = 24/421 (5%)

Query: 50  PSPTVEDV-LDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVV 108
           PSP +  + LD    + S   V QVL    +   PA+ FF+W+      +HSP  +NL+V
Sbjct: 109 PSPELASLALDGLSFQPSSGLVSQVLNRFSNDWVPALGFFKWAKSLTGYRHSPELYNLMV 168

Query: 109 DLLGKNCLFDAMWDAIKSMKK-ENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCK 167
           D+LGK   FD+M + ++ M + E  ++L T   V      A + +DAI  F  ME++G K
Sbjct: 169 DILGKCRSFDSMSELVEEMARLEGYVTLETMTKVMRRLARARKHEDAIEAFGRMEKFGVK 228

Query: 168 HDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTF 227
            D  ALN L+ A+ +      A + +    G I   + ++ +L+ GW + RD  NA+K  
Sbjct: 229 KDTAALNVLIDALVKGDSVEHAHKVVLEFKGSIPLSSRSFNVLMHGWCRARDFDNARKAM 288

Query: 228 GEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNS-LKRMMERGCNP-GMTFFKLAFE 285
            +M  E G++PD V +Y +++     G +  +  V+  L+ M E GC P  +T+  +   
Sbjct: 289 EDMK-EHGFEPD-VFSYTNFIEAY--GHERDFRKVDQVLEEMRENGCPPNAVTYTSVMLH 344

Query: 286 ECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAF 345
               GQ LR A  ++  M    G   DT  Y+ MI +   +     A  + ++M   G  
Sbjct: 345 LGKAGQ-LRKALEVYEKMKSD-GCVADTPFYSSMIFILGKAGRLKDACDVFEDMPKQGVV 402

Query: 346 PDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVY------MDSDDP 399
            D+ TYN +        +   A  L  EM          +C+  V  Y            
Sbjct: 403 RDVVTYNSMISTACAHSREETALRLLKEMEDG-------SCKPNVGTYHRLLKMCCKKKR 455

Query: 400 YVAIKF-WKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSK 458
              +KF   +M +N+ S    T +LLV  L     + +A  + + M  +G    P  L K
Sbjct: 456 MKVLKFLLDHMFKNNISPDLATYSLLVNALRKSGKVEDAYSFLEEMVLRGFTPKPSTLKK 515

Query: 459 L 459
           L
Sbjct: 516 L 516


>gi|356540343|ref|XP_003538649.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
           mitochondrial-like [Glycine max]
          Length = 543

 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 120/439 (27%), Positives = 189/439 (43%), Gaps = 27/439 (6%)

Query: 50  PSPTVEDV-LDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVV 108
           PSP +  + LD    + S   V QVL    +   PA+ FF+W+  Q   +HSP   NL+V
Sbjct: 106 PSPELAALALDGLSFQPSSGLVSQVLNRFSNDWVPALGFFKWAKSQTGYRHSPELCNLMV 165

Query: 109 DLLGKNCLFDAMWDAIKSMKK--ENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGC 166
           D+LGK   FD M D ++ M K  +  ++L T A V      A + +DAI  F  M+++G 
Sbjct: 166 DILGKCKSFDPMSDLVEEMAKLEQGYVTLETMAKVIRRLAKARKHEDAIEAFRRMDKFGV 225

Query: 167 KHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKT 226
             D  ALN L+ A+ +      A + +    G I   + ++ +L+ GW + R   NA+K 
Sbjct: 226 NKDTAALNVLIDALVKGDSVEHAHKVVLEFKGLIPLSSHSFNVLMHGWCRARKFDNARKA 285

Query: 227 FGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNS-LKRMMERGCNPGMTFFKLAFE 285
             +M  E+G++PD V +Y S++       D  +  V+  L+ M E GC P    +     
Sbjct: 286 MEDMK-ELGFEPD-VFSYTSFIEAYCHERD--FRKVDQVLEEMRENGCPPNAVTYTTVML 341

Query: 286 ECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAF 345
                  L  A  ++  M    G   DT +Y+ MI +   +     A  + ++M   G  
Sbjct: 342 HLGKAGQLSKALEVYEKMKCD-GCVADTPVYSCMIFILGKAGRLKDACDVFEDMPKQGVV 400

Query: 346 PDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVY------MDSDDP 399
            D+ TYN +        +   A  L  EM          +C+  V  Y            
Sbjct: 401 RDVVTYNTMISTACAHSREETALRLLKEMEDG-------SCKPNVGTYHPLLKMCCKKKR 453

Query: 400 YVAIKF-WKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFAL-- 456
              +KF   +M +N  S    T +LLV  LC    + +A  + + M  KG    P  L  
Sbjct: 454 MKVLKFLLDHMFKNDISPDLATYSLLVNALCKTGKVADAYSFLEEMVLKGFTPKPSTLKG 513

Query: 457 --SKLKQILIKARKEAVYE 473
              +L+ + +   KE V E
Sbjct: 514 LAGELESLSMLEEKERVEE 532


>gi|186495472|ref|NP_177628.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|133778904|gb|ABO38792.1| At1g74900 [Arabidopsis thaliana]
 gi|332197524|gb|AEE35645.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 453

 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 99/405 (24%), Positives = 175/405 (43%), Gaps = 23/405 (5%)

Query: 36  PPTIKTLCEIIANTPSPTVED---VLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSA 92
           P     + ++I ++P+ T +D   +L       +   V  VLK  ++H   A++FF +  
Sbjct: 22  PADSAAIAKLILSSPNTTHQDDQFLLSTKTTPWTPNLVNSVLKRLWNHGPKALQFFHF-- 79

Query: 93  YQLNDKHSPY-----AWNLVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASVFSSYV 146
             L++ H  Y     +++L +D+  +  L   +W  I  M+   +  S  TFA V   Y 
Sbjct: 80  --LDNHHREYVHDASSFDLAIDIAARLHLHPTVWSLIHRMRSLRIGPSPKTFAIVAERYA 137

Query: 147 VADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDT 206
            A +   A+  F  M ++GC  D+ + N++L  +C+  +   A++  R + GR   D  T
Sbjct: 138 SAGKPDKAVKLFLNMHEHGCFQDLASFNTILDVLCKSKRVEKAYELFRALRGRFSVDTVT 197

Query: 207 YAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG---CDGIYETVN 263
           Y ++L GW   +    A +   EMV E G +P N+  Y+    T+LKG      I     
Sbjct: 198 YNVILNGWCLIKRTPKALEVLKEMV-ERGINP-NLTTYN----TMLKGFFRAGQIRHAWE 251

Query: 264 SLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLY 323
               M +R C   +  +            ++ A  ++  M+ R G  P    YN MI + 
Sbjct: 252 FFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFDEMI-REGVLPSVATYNAMIQVL 310

Query: 324 CYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNH 383
           C  +    A+ + +EMV  G  P++ TYN+L   L    +      L   M       N 
Sbjct: 311 CKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQRMENEGCEPNF 370

Query: 384 ENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGL 428
           +     +R Y +  +   A+  ++ M    C    +T N+L++G+
Sbjct: 371 QTYNMMIRYYSECSEVEKALGLFEKMGSGDCLPNLDTYNILISGM 415


>gi|357480939|ref|XP_003610755.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512090|gb|AES93713.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 596

 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 124/438 (28%), Positives = 199/438 (45%), Gaps = 30/438 (6%)

Query: 54  VEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGK 113
           V   LD +  RVS   V QVLK   +    A  FF W+  Q    HSP  +NL+VD+LGK
Sbjct: 164 VVQALDGSGFRVSNSLVMQVLKRFGNDWVAAYGFFIWAKKQTPYVHSPEVYNLMVDILGK 223

Query: 114 NCLFDAMWDAIKSMKK-ENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFA 172
              FD MW  +K MK+ E  + L T + V   +  A R +DA+  F  M +YG + D  A
Sbjct: 224 AKEFDLMWKLVKEMKRIEGYVCLDTMSKVMRRFAKAQRHEDAVEAFRGMGKYGVEKDTAA 283

Query: 173 LNSLLSAICRDGKTID-AWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMV 231
           LN LL A+ + G++I+ A   L      +   + ++ IL+ GW K R+   A+K   E  
Sbjct: 284 LNKLLDALVK-GQSIEIAHNVLDEFKSSVPLSSPSFNILINGWCKVRNFEKARKVMEERK 342

Query: 232 IEVGWDPDNVPAYDSYLITLLKGCDGIYETVNS-LKRMMERGCNP-GMTFFKLAFEECLT 289
            E G++PD V  Y++++ +     D  +  V+  L+ M   GC P  +T+  L       
Sbjct: 343 -EHGFEPD-VFTYNNFIESYCHDKD--FRKVDEVLEEMRGNGCPPNAVTYTILLLGYGKA 398

Query: 290 GQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQ 349
           GQ  +  E      + + G  PDT  Y+ ++ +   +     A ++ D+M   G   D+ 
Sbjct: 399 GQLSKALEEY--ERMKKDGIVPDTPFYSSLMYILGKAGRLKDACEVFDDMPKQGVVRDVV 456

Query: 350 TYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVY---MDSDDPYVAIKFW 406
           TYN +        K   A  L  EM          +C+  ++ Y   +        +K  
Sbjct: 457 TYNTMISTACAHSKEETALRLLKEM-------EETSCKPDLQTYHPLLKMCCKKKRMKVL 509

Query: 407 KYMIENH-----CSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKG---IQVTPFALSK 458
           K+++++      C D   T  LLV  L +   L EA  + + M  KG   ++ T   L++
Sbjct: 510 KFLLDHMFKHDLCPDRG-TYTLLVQSLSNSGKLVEACTFFEEMVSKGFTPMETTVKLLTR 568

Query: 459 LKQILIKARKEAVYEELL 476
             +I    +++   EEL+
Sbjct: 569 KLEIKSMLKEKDQIEELM 586


>gi|356547370|ref|XP_003542086.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g65820-like [Glycine max]
          Length = 628

 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 107/421 (25%), Positives = 185/421 (43%), Gaps = 8/421 (1%)

Query: 52  PTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLL 111
           P +E  L ++ + V     E+VL         A +F+ W++ Q   +    A+  ++ +L
Sbjct: 81  PKLELALRESGVVVRPGLTERVLNRCGDAGNLAYRFYSWASKQSGHRLDHDAYKAMIKVL 140

Query: 112 GKNCLFDAMWDAIKSMKKEN--VLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHD 169
            +   F A+W  I+ M++EN  +++   F  +   +  A  V  A+   D M  YGC+ D
Sbjct: 141 SRMRQFGAVWALIEEMRQENPHLITPQVFVILMRRFASARMVHKAVQVLDEMPNYGCEPD 200

Query: 170 VFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGE 229
            +    LL A+ ++G   +A      +  R KP    +  LL GW KE  +  AK    +
Sbjct: 201 EYVFGCLLDALRKNGSVKEAASLFEELRYRWKPSVKHFTSLLYGWCKEGKLMEAKHVLVQ 260

Query: 230 MVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLT 289
           M  + G +PD V  Y++ L    +  D + +  + LK M  +GC P  T + +  +    
Sbjct: 261 MK-DAGIEPDIV-VYNNLLGGYAQA-DKMGDAYDLLKEMRRKGCEPNATSYTVLIQSLCK 317

Query: 290 GQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQ 349
            + L  A  ++  M  R G + D   Y+ +IS +C   +     +LLDEM+  G FP+  
Sbjct: 318 HERLEEATRVFVEM-QRNGCQADLVTYSTLISGFCKWGKIKRGYELLDEMIQQGHFPNQV 376

Query: 350 TYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYM 409
            Y  +     K  +L E   L NEM K     +       +R+     +    ++ W  M
Sbjct: 377 IYQHIMVAHEKKEELEECKELVNEMQKIGCAPDLSIYNTVIRLACKLGEVKEGVRLWNEM 436

Query: 410 IENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTP--FALSKLKQILIKAR 467
             +  S   +T  +++ G  +   L EA +Y K M  +G+   P    L +L   L++A 
Sbjct: 437 ESSGLSPSIDTFVIMINGFLEQGCLVEACEYFKEMVGRGLFAAPQYGTLKELMNSLLRAE 496

Query: 468 K 468
           K
Sbjct: 497 K 497


>gi|242087579|ref|XP_002439622.1| hypothetical protein SORBIDRAFT_09g017100 [Sorghum bicolor]
 gi|241944907|gb|EES18052.1| hypothetical protein SORBIDRAFT_09g017100 [Sorghum bicolor]
          Length = 657

 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 112/453 (24%), Positives = 194/453 (42%), Gaps = 15/453 (3%)

Query: 36  PPTIKTLCEIIANTPSPTVEDVLDKTLIRVSQETVEQVL-----KFSYSHPGPAVKFFRW 90
           P  +  +C  IA+  +   +  L+  L  +S    E V+     +F ++H  P+ +FFRW
Sbjct: 161 PEVVGRVCAAIADVVAAGADANLEAALSALSPPLCEAVVLAVLHRFKHAH-RPSYRFFRW 219

Query: 91  SAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADR 150
           +       H+   +  ++ +LGK   F+ M   I+ M K   LS+  F     S+  A  
Sbjct: 220 ATASGGFTHTTITYCKMLHILGKTRQFEMMVAIIQEMGKVGALSMDAFKVAIKSFAAAGE 279

Query: 151 VKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAIL 210
           +K+A+  F++M++ G    V + N LL A+  +G   +A Q    + G+  PD  +Y  L
Sbjct: 280 IKNAVGVFELMKKNGFDDGVESFNCLLVALANEGLGREARQVFDKMHGQYSPDLRSYTAL 339

Query: 211 LEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMME 270
           +  W   R++  A + + EM +E G  PD V  +++ +  LL+G     E +   + M  
Sbjct: 340 MLAWCNARNLVEAGRVWNEM-LEKGMKPDVV-VHNTMIEGLLRG-QRRPEALKMFELMKA 396

Query: 271 RGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNET 329
           +G  P + T+  L  + C  G+     E        R   +PD   Y  ++  Y  +   
Sbjct: 397 KGPPPNVWTYTMLIRDHCKRGKMDMAMECFEEMQEARC--QPDVATYTCLLVGYGNAKRM 454

Query: 330 GAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAA 389
                +L+EM   G  PD +TYN L + L   +   +A+ ++ +M+K             
Sbjct: 455 DRVTAVLEEMTQKGCPPDARTYNALIKLLTNRKMPDDAARIYKKMIKKGLEPTIHTYNMM 514

Query: 390 VRVYMDSDDPY-VAIKFWKYMIENH-CSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEK 447
           ++ Y   D  Y +    W+ M     C D++    + + G        EA KY + M  K
Sbjct: 515 MKSYFLGDRNYAMGCAVWEEMHRRGICPDVNSY-TVFINGHIRHGRPEEAYKYIEEMINK 573

Query: 448 GIQVTPFALSKLKQILIKARKEAVYEELLKKCK 480
           G+       +K      KA K  +  EL  K K
Sbjct: 574 GMTAPQIDYNKFAADFSKAGKPDILYELALKVK 606


>gi|302775294|ref|XP_002971064.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
 gi|300161046|gb|EFJ27662.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
          Length = 814

 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 106/431 (24%), Positives = 186/431 (43%), Gaps = 9/431 (2%)

Query: 13  PSPDPHNKRKRSTFASHLD-VPNLPPTIKTLCEIIANTPSPTVEDVLDKTLIRVSQETVE 71
           PS  P  +     F    D V ++  TIK +    ++     + +VL     +V    V 
Sbjct: 31  PSGKPEREHLTPDFVRRADLVTSIVETIKDVRLDGSSWSVHNIRNVLGPVHGQVLGSHVA 90

Query: 72  QVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKEN 131
            VL+ S    G A+ FFRW+  Q   +H  + +N +++LL     +   +   + M K  
Sbjct: 91  AVLR-SLKVTGTAISFFRWAGEQAGFQHDVFTYNCLMNLLVAEKNYSQCYAIHEEMLKAG 149

Query: 132 VL-SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAW 190
           +  +  +F  +  S+    R  DA+T F++M++  CK D+     L+  +C+ G    A+
Sbjct: 150 IAPNTFSFNILIRSFARTRRADDAVTCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAF 209

Query: 191 QFLR--VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYL 248
           +     +  G + PD   +  ++    K + V  A++ FG+M  + G+ PD + AY++ +
Sbjct: 210 EVFHEMMAMGFVPPDRALHTAMVRTLLKAKRVKEAREVFGQME-KCGFPPDAI-AYNTMI 267

Query: 249 ITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIG 308
             L K      E +  L  M+ + C P    + +          L  AE ++  M    G
Sbjct: 268 DGLAKAGHA-QEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAAS-G 325

Query: 309 FRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEAS 368
           FRP++ +Y  +I  +  S     A  L DEMV  G  PD+ T+ ++ + L K     +A+
Sbjct: 326 FRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAA 385

Query: 369 GLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGL 428
             F EM++     N       ++          A +  K MI + C   S T   L+ G 
Sbjct: 386 KSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLLDGF 445

Query: 429 CDMHMLPEAVK 439
           C +  L EA +
Sbjct: 446 CKLGRLDEAAQ 456



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 76/348 (21%), Positives = 132/348 (37%), Gaps = 7/348 (2%)

Query: 105 NLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVMEQ 163
            +++D L K+  F+    + + M +     ++ T+ ++        RV +A      M  
Sbjct: 369 TVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIA 428

Query: 164 YGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDG-RIKPDNDTYAILLEGWEKERDVAN 222
           +GC  D      LL   C+ G+  +A Q L  +D     P+   Y+ L+ G     D  +
Sbjct: 429 HGCFPDSVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLVNGL---CDGGS 485

Query: 223 AKKTFGEMVIEVGWDPDNV-PAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFK 281
            +KT  ++  +     + + P     +I  L     + E     +RM+  GC P  T + 
Sbjct: 486 VEKTLDDLFEQSKAAAETLDPGLCCSIIVGLCKTGRLDEACRIFQRMVSEGCKPDATTYN 545

Query: 282 LAFEE-CLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMV 340
           +     C + +N     F     + ++G+ PD   Y  +    C   E   A+K+L+E  
Sbjct: 546 ILINGLCRSRENRVERAFALLHDLEKVGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEAS 605

Query: 341 YNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPY 400
             G   D+  Y  L   L    ++  A  LF EMV+     +       +   +      
Sbjct: 606 SRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDAAAYCCIINGLIKVKKLE 665

Query: 401 VAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448
            A KF+  MI         T   LV  LC    + EA    + M  +G
Sbjct: 666 DACKFFDEMIGKGQKPTVATYTALVQALCHAGNVDEAFHRFESMLARG 713


>gi|302757207|ref|XP_002962027.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
 gi|300170686|gb|EFJ37287.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
          Length = 814

 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 106/431 (24%), Positives = 186/431 (43%), Gaps = 9/431 (2%)

Query: 13  PSPDPHNKRKRSTFASHLD-VPNLPPTIKTLCEIIANTPSPTVEDVLDKTLIRVSQETVE 71
           PS  P  +     F    D V ++  TIK +    ++     + +VL     +V    V 
Sbjct: 31  PSGKPEREHLTPDFVRRADLVTSIVETIKDVRLDGSSWSVHNIRNVLGPVHGQVLGSHVA 90

Query: 72  QVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKEN 131
            VL+ S    G A+ FFRW+  Q   +H  + +N +++LL     +   +   + M K  
Sbjct: 91  AVLR-SLKVTGTAISFFRWAGEQAGFQHDVFTYNCLMNLLVAEKNYSQCYAIHEEMLKAG 149

Query: 132 VL-SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAW 190
           +  +  +F  +  S+    R  DA+T F++M++  CK D+     L+  +C+ G    A+
Sbjct: 150 IAPNTFSFNILIRSFARTRRADDAVTCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAF 209

Query: 191 QFLR--VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYL 248
           +     +  G + PD   +  ++    K + V  A++ FG+M  + G+ PD + AY++ +
Sbjct: 210 EVFHEMMAMGFVPPDRALHTAMVRTLLKAKRVKEAREVFGQME-KCGFPPDAI-AYNTMI 267

Query: 249 ITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIG 308
             L K      E +  L  M+ + C P    + +          L  AE ++  M    G
Sbjct: 268 DGLAKAGHA-QEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAAS-G 325

Query: 309 FRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEAS 368
           FRP++ +Y  +I  +  S     A  L DEMV  G  PD+ T+ ++ + L K     +A+
Sbjct: 326 FRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAA 385

Query: 369 GLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGL 428
             F EM++     N       ++          A +  K MI + C   S T   L+ G 
Sbjct: 386 KSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLLDGF 445

Query: 429 CDMHMLPEAVK 439
           C +  L EA +
Sbjct: 446 CKLGRLDEAAQ 456



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 77/348 (22%), Positives = 133/348 (38%), Gaps = 7/348 (2%)

Query: 105 NLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVMEQ 163
            +++D L K+  F+    + + M +     ++ T+ ++        RV +A      M  
Sbjct: 369 TVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIA 428

Query: 164 YGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDG-RIKPDNDTYAILLEGWEKERDVAN 222
           +GC  D      LL   C+ G+  +A Q L  +D     P+   Y+ L++G     D  +
Sbjct: 429 HGCFPDSVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLVKGL---CDGGS 485

Query: 223 AKKTFGEMVIEVGWDPDNV-PAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFK 281
            + T  ++  +     +N+ P     +I  L     + E     +RM+  GC P  T + 
Sbjct: 486 VENTLDDLFEQSKAAAENLDPGLCCSIIVGLCKTGRLDEACRIFQRMVSEGCKPDATTYN 545

Query: 282 LAFEE-CLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMV 340
           +     C + +N     F     +  +G+ PD   Y  +    C   E   A+K+L+E  
Sbjct: 546 ILINGLCRSRENRVERAFALLHDLEMVGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEAS 605

Query: 341 YNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPY 400
             G   D+  Y  L   L    ++  A  LF EMV+     +       +   +      
Sbjct: 606 SRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDAAAYCCIINGLIKGKKLE 665

Query: 401 VAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448
            A KF+  MI         T   LV  LC    + EA    +GM  +G
Sbjct: 666 DACKFFDEMIGKGQKPTVATYTALVQALCHAGNVDEAFHRFEGMLARG 713


>gi|449442128|ref|XP_004138834.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
           mitochondrial-like [Cucumis sativus]
          Length = 591

 Score =  124 bits (311), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 108/424 (25%), Positives = 183/424 (43%), Gaps = 41/424 (9%)

Query: 50  PSP-TVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVV 108
           PSP  V + L+    RVS   V Q+LK  ++    A   F+W+  Q+  +HSP ++N +V
Sbjct: 155 PSPENVAEALNGKAYRVSNTLVAQLLKRFHNDWIQAYGIFKWAKDQIPYRHSPESYNSMV 214

Query: 109 DLLGKNCLFDAMWDAIKSMKK-ENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCK 167
           D+LGK   F  MW+ +  M      +SL T + V      A R ++AI  F  +E+YG  
Sbjct: 215 DILGKAKNFRLMWELVDEMNHLAGSVSLETMSKVIRRLARAGRHQEAIHAFRNIEKYGIS 274

Query: 168 HDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTF 227
            D  A+N L+ A+ ++    DA    R +   I  +  ++ +L+ G+ K + +  A K  
Sbjct: 275 TDTTAMNVLMDALVKEASVEDAHNVFRELKCSIPFNLASFNVLIHGYCKAKKLDEAWKIM 334

Query: 228 GEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNS-LKRMMERGCNPGMTFF------ 280
           GE V + G +PD V +Y +++    +  D  +  V+  L +M  +GC P +  F      
Sbjct: 335 GE-VEKSGLEPD-VISYTAFIEAHCREKD--FRNVDKVLVQMEHKGCKPNVITFTIIMHA 390

Query: 281 ---------------KLAFEECLTGQNLRGAEFIWGAMVGRI-------------GFRPD 312
                          K+  E C+   +   +        GR+             G  PD
Sbjct: 391 LGKAKQINEALKVYEKMKKEGCVPDSSFYSSLIFILGKAGRLTDVKEIVEDMEKQGVTPD 450

Query: 313 THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFN 372
              YN +IS  C  ++   A+ LL +M      PD++TY+ L +   + +++     L +
Sbjct: 451 VLTYNTLISCACAHSQEETALTLLLKMEEVSCKPDLKTYHPLLKMFCRKKRMKVLKFLLD 510

Query: 373 EMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMH 432
            M KN+  +        VR   ++   ++A  F+  M+         T  +L   L    
Sbjct: 511 HMFKNDVSIEAGTYAILVRGLCENGKLHLACSFFGEMLSKAMVPKDSTFKMLKEELERKS 570

Query: 433 MLPE 436
           ML E
Sbjct: 571 MLEE 574


>gi|51971677|dbj|BAD44503.1| hypothetical protein [Arabidopsis thaliana]
          Length = 447

 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 98/405 (24%), Positives = 174/405 (42%), Gaps = 23/405 (5%)

Query: 36  PPTIKTLCEIIANTPSPTVED---VLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSA 92
           P     + ++I ++P+ T +D   +L       +   V  VLK  ++H   A++FF +  
Sbjct: 16  PADSAAIAKLILSSPNTTHQDDQFLLSTKTTPWTPNLVNSVLKRLWNHGPKALQFFHF-- 73

Query: 93  YQLNDKHSPY-----AWNLVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASVFSSYV 146
             L++ H  Y     +++L +D+  +  L   +W  I  M+   +  S  TFA V   Y 
Sbjct: 74  --LDNHHREYVHDASSFDLAIDIAARLHLHPTVWSLIHRMRSLRIGPSPKTFAIVAERYA 131

Query: 147 VADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDT 206
            A +   A+  F  M ++GC  D+ + N++L  +C+  +   A++  R + GR   D  T
Sbjct: 132 SAGKPDKAVKLFLNMHEHGCFQDLASFNTILDVLCKSKRVEKAYELFRALRGRFSVDTVT 191

Query: 207 YAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG---CDGIYETVN 263
           Y ++L GW   +      +   EMV E G +P N+  Y+    T+LKG      I     
Sbjct: 192 YNVILNGWCLIKRTPKTLEVLKEMV-ERGINP-NLTTYN----TMLKGFFRAGQIRHAWE 245

Query: 264 SLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLY 323
               M +R C   +  +            ++ A  ++  M+ R G  P    YN MI + 
Sbjct: 246 FFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFDEMI-REGVLPSVATYNAMIQVL 304

Query: 324 CYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNH 383
           C  +    A+ + +EMV  G  P++ TYN+L   L    +      L   M       N 
Sbjct: 305 CKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQRMENEGCEPNF 364

Query: 384 ENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGL 428
           +     +R Y +  +   A+  ++ M    C    +T N+L++G+
Sbjct: 365 QTYNMMIRYYSECSEVEKALGLFEKMGSGDCLPNLDTYNILISGM 409


>gi|449505568|ref|XP_004162510.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
           mitochondrial-like [Cucumis sativus]
          Length = 614

 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 108/424 (25%), Positives = 183/424 (43%), Gaps = 41/424 (9%)

Query: 50  PSP-TVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVV 108
           PSP  V + L+    RVS   V Q+LK  ++    A   F+W+  Q+  +HSP ++N +V
Sbjct: 178 PSPENVAEALNGKAYRVSNTLVAQLLKRFHNDWIQAYGIFKWAKDQIPYRHSPESYNSMV 237

Query: 109 DLLGKNCLFDAMWDAIKSMKK-ENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCK 167
           D+LGK   F  MW+ +  M      +SL T + V      A R ++AI  F  +E+YG  
Sbjct: 238 DILGKAKNFRLMWELVDEMNHLAGSVSLETMSKVIRRLARAGRHQEAIHAFRNIEKYGIS 297

Query: 168 HDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTF 227
            D  A+N L+ A+ ++    DA    R +   I  +  ++ +L+ G+ K + +  A K  
Sbjct: 298 TDTTAMNVLMDALVKEASVEDAHNVFRELKCSIPFNLASFNVLIHGYCKAKKLDEAWKIM 357

Query: 228 GEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNS-LKRMMERGCNPGMTFF------ 280
           GE V + G +PD V +Y +++    +  D  +  V+  L +M  +GC P +  F      
Sbjct: 358 GE-VEKSGLEPD-VISYTAFIEAHCREKD--FRNVDKVLVQMEHKGCKPNVITFTIIMHA 413

Query: 281 ---------------KLAFEECLTGQNLRGAEFIWGAMVGRI-------------GFRPD 312
                          K+  E C+   +   +        GR+             G  PD
Sbjct: 414 LGKAKQINEALKVYEKMKKEGCVPDSSFYSSLIFILGKAGRLTDVKEIVEDMEKQGVTPD 473

Query: 313 THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFN 372
              YN +IS  C  ++   A+ LL +M      PD++TY+ L +   + +++     L +
Sbjct: 474 VLTYNTLISCACAHSQEETALTLLLKMEEVSCKPDLKTYHPLLKMFCRKKRMKVLKFLLD 533

Query: 373 EMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMH 432
            M KN+  +        VR   ++   ++A  F+  M+         T  +L   L    
Sbjct: 534 HMFKNDVSIEAGTYAILVRGLCENGKLHLACSFFGEMLSKAMVPKDSTFKMLKEELERKS 593

Query: 433 MLPE 436
           ML E
Sbjct: 594 MLEE 597


>gi|356557306|ref|XP_003546958.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g65820-like [Glycine max]
          Length = 654

 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 106/421 (25%), Positives = 185/421 (43%), Gaps = 8/421 (1%)

Query: 52  PTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLL 111
           P +E  L ++ + V     E+VL         A +F+ W++ Q   +    A+  ++ +L
Sbjct: 107 PKLELALRESGVVVRPGLTERVLSRCGDAGNLAYRFYSWASKQSGHRLDHDAYKAMIKVL 166

Query: 112 GKNCLFDAMWDAIKSMKKEN--VLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHD 169
            +   F A+W  I+ M++EN  +++   F  +   +  A  V  A+   D M +YGC+ D
Sbjct: 167 SRMRQFGAVWALIEEMRQENPHLITPQVFVILMRRFASARMVHKAVEVLDEMPKYGCEPD 226

Query: 170 VFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGE 229
            +    LL A+C++G   +A      +  R KP    +  LL GW KE  +  AK    +
Sbjct: 227 EYVFGCLLDALCKNGSVKEAASLFEDMRYRWKPSVKHFTSLLYGWCKEGKLMEAKHVLVQ 286

Query: 230 MVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLT 289
           M  ++G +PD V  Y++ L    +    + +  + LK M  + C P  T + +  +    
Sbjct: 287 MK-DMGIEPDIV-VYNNLLGGYAQA-GKMGDAYDLLKEMRRKRCEPNATSYTVLIQSLCK 343

Query: 290 GQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQ 349
            + L  A  ++  M    G + D   Y+ +IS +C   +     +LLDEM+  G FP+  
Sbjct: 344 HERLEEATRLFVEMQTN-GCQADVVTYSTLISGFCKWGKIKRGYELLDEMIQQGHFPNQV 402

Query: 350 TYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYM 409
            Y  +     K  +L E   L NEM K     +       +R+     +    I+ W  M
Sbjct: 403 IYQHIMLAHEKKEELEECKELVNEMQKIGCAPDLSIYNTVIRLACKLGEVKEGIQLWNEM 462

Query: 410 IENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTP--FALSKLKQILIKAR 467
             +  S   +T  +++ G  +   L EA +Y K M  +G+   P    L +L   L++A 
Sbjct: 463 ESSGLSPGMDTFVIMINGFLEQGCLVEACEYFKEMVGRGLFTAPQYGTLKELMNSLLRAE 522

Query: 468 K 468
           K
Sbjct: 523 K 523


>gi|326517954|dbj|BAK07229.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 549

 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 95/339 (28%), Positives = 153/339 (45%), Gaps = 14/339 (4%)

Query: 57  VLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCL 116
            +D   +RVS   V+++L+   S    A  FF W+  Q   +HS  ++N +VD+LGK   
Sbjct: 116 AMDCCPVRVSDRMVDKILRRFGSDWVAAFGFFMWAGAQEGYRHSADSYNSMVDILGKFKQ 175

Query: 117 FDAMWDAIKSMKK-ENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNS 175
           FD MW  I  M +   ++SLAT   V      A R  DAI  F+ M+Q+G   D  A+N 
Sbjct: 176 FDLMWGLISQMDEIGGLVSLATMTKVMRRLAGASRWTDAIDAFNKMDQFGVVKDTTAMNV 235

Query: 176 LLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVG 235
           LL  +C++     A    + + G + PD  ++  L+ GW K R +  A+    EM  E G
Sbjct: 236 LLDTLCKERSVKRARGAFQELRGSVPPDESSFNTLVHGWCKARMMNEARDMMKEME-EHG 294

Query: 236 WDPDNVPAYDSYLITLLKGCDGIYETVNS-LKRMMERGCNPGMTFFKLAFEECLTGQNLR 294
           + P +V  Y S +       D  ++TV + L  M  +GC P +  + +           +
Sbjct: 295 FKP-SVITYTSLIEAYCMEKD--FQTVYAILNEMRSKGCPPNVITYTIVMHALGKAGRTQ 351

Query: 295 GAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNIL 354
            A  I+  + G  G  PD   YN +I +   +     A  ++D+M   G  P + T+N L
Sbjct: 352 EALDIFDKVRGD-GCAPDASFYNSLIYILGRAGRLEDANSVVDKMRMTGVRPTVATFNTL 410

Query: 355 FEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVY 393
                      +A      +VK E     ++C+  ++ Y
Sbjct: 411 ISAACDHS---QAENALKMLVKME----EQSCKPDIKTY 442



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 62/285 (21%), Positives = 120/285 (42%), Gaps = 14/285 (4%)

Query: 84  AVKFFRWSAYQLNDKHSP--YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFAS 140
           +VK  R +  +L     P   ++N +V    K  + +   D +K M++     S+ T+ S
Sbjct: 245 SVKRARGAFQELRGSVPPDESSFNTLVHGWCKARMMNEARDMMKEMEEHGFKPSVITYTS 304

Query: 141 VFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR- 199
           +  +Y +    +      + M   GC  +V     ++ A+ + G+T +A      V G  
Sbjct: 305 LIEAYCMEKDFQTVYAILNEMRSKGCPPNVITYTIVMHALGKAGRTQEALDIFDKVRGDG 364

Query: 200 IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIY 259
             PD   Y  L+    +   + +A     +M +  G  P  V  +++ +      CD   
Sbjct: 365 CAPDASFYNSLIYILGRAGRLEDANSVVDKMRM-TGVRP-TVATFNTLISA---ACDH-S 418

Query: 260 ETVNSLK---RMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMY 316
           +  N+LK   +M E+ C P +  +    + C   Q ++   F+   M  R    PD   Y
Sbjct: 419 QAENALKMLVKMEEQSCKPDIKTYTPLLKLCCKRQWIKVLRFLICHMF-RKDITPDFSTY 477

Query: 317 NMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKG 361
            ++++  C + +   +   L+EMV  G  P  +T++++ E L K 
Sbjct: 478 TLLVTWLCRNGKPAQSCLFLEEMVLKGFAPKKETFDLVAEKLDKA 522


>gi|242049112|ref|XP_002462300.1| hypothetical protein SORBIDRAFT_02g023500 [Sorghum bicolor]
 gi|241925677|gb|EER98821.1| hypothetical protein SORBIDRAFT_02g023500 [Sorghum bicolor]
          Length = 541

 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 113/425 (26%), Positives = 179/425 (42%), Gaps = 12/425 (2%)

Query: 32  VPNL---PPTIKTLCEIIANTPSPT--VEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVK 86
           VP L   P  +  LC ++++   P   +   LD    R++      VL+   + P P+++
Sbjct: 40  VPELDPDPQLVGALCRVLSDFRGPRHDLRAALDGFAPRLTPAAAADVLRRCRNLPVPSLR 99

Query: 87  FFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYV 146
           FF ++A      H P +  ++   L    LF  +   +  + +   LS   F  +F +Y 
Sbjct: 100 FFLFAAALPGFTHLPESLLILAGSLAGARLFPLLRSLLSDLPRP-ALSRDLFPLLFRAYA 158

Query: 147 VADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDT 206
            A    DAI  F  ME++G    V  L+SLL  +  +G    A  F R    +      T
Sbjct: 159 RAGLPDDAIRAFSSMERFGFLPTVADLHSLLFTLSHNGLVEHAEAFFRESPIQFDVSAKT 218

Query: 207 YAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLK 266
           Y IL+ GW        A+K F EM IE G  PD VPAY++ +  L +G D +      LK
Sbjct: 219 YTILISGWAVVAKPEKAQKLFDEM-IERGVQPD-VPAYNALIDALCRGGD-VALAQEQLK 275

Query: 267 RMME-RGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCY 325
            M   RG  P    +          ++ R A  +   M  R    P+   YN +I L C 
Sbjct: 276 DMQRSRGLAPDAATYGPFLRSACASKDARAALRVLDRMRAR-SLTPNVFTYNAVIRLLCE 334

Query: 326 SNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHEN 385
             E   A  +L+EM   G  PD+ +YN L     K +++ +A  L + M +   + N  +
Sbjct: 335 LGEVDEAYNILNEMATYGEKPDVWSYNTLLNTHCKLKEVNKALRLISRMDEGLCLPNRHS 394

Query: 386 CRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGL-CDMHMLPEAVKYAKGM 444
               +++ +       AI+ W  M +      + T  +++ GL C      EA  Y   M
Sbjct: 395 YNMILKMLIAIGRVDRAIEVWDGMEKRGFHPGAATYAVMIHGLSCKKGRAEEACSYFLRM 454

Query: 445 AEKGI 449
            + GI
Sbjct: 455 VDDGI 459


>gi|357440039|ref|XP_003590297.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479345|gb|AES60548.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 661

 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 96/355 (27%), Positives = 163/355 (45%), Gaps = 40/355 (11%)

Query: 63  IRVSQETVEQVLKFSYSHP-GPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMW 121
           I +S+  + ++L F Y      A+  FRW+    N KHS  +++++VD+LG+    D M 
Sbjct: 82  IHLSENLINRLL-FRYKDDWKSALAIFRWAGSHSNFKHSQQSYDMMVDILGRMKAMDKMR 140

Query: 122 DAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAIC 181
           + ++ M++E++++L T A V   +V A + KDA+  FD ++  G + +  ++N LL  +C
Sbjct: 141 EILEEMRQESLITLNTIAKVMRRFVGARQWKDAVRIFDDLQFLGLEKNTESMNVLLDTLC 200

Query: 182 RDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEM--------VI- 232
           ++     A +    +   I P+  T+ IL+ GW   R V  A  T  EM        VI 
Sbjct: 201 KEKFVEQAREIYLELKHYIAPNAHTFNILIHGWCNIRRVEEAHWTIQEMKGYGCRPCVIS 260

Query: 233 ----------EVGWD--------------PDNVPAYDSYLITLLKGCDGIYETVNSLKRM 268
                     E  +D                NV  Y + +  L K  +   E +  ++RM
Sbjct: 261 YSTIIQCYCQEQNFDRVYDLLDEMQAQNCSPNVVTYTTIMCALAKA-EKFEEALQVVERM 319

Query: 269 MERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNE 328
              GC P   FF            +  A  ++   + +    P+T  YN MIS++CY  +
Sbjct: 320 NAVGCRPDTLFFNSLIYTLGRAGRIDDATHVFKVAMPKASVAPNTSTYNSMISMFCYYAQ 379

Query: 329 TGAAMKLLDEMVYNG-AFPDIQTYNILFEFLVKGRKL--WEASGLFNEMVKNENV 380
              A  +L EM  +G   PDIQTY+ L +   K R++  W  + + N+MV   ++
Sbjct: 380 EERAFGILKEMEKSGLCKPDIQTYHPLIKSCFKMREIDTW-LNDILNDMVNKYHI 433


>gi|296081511|emb|CBI20034.3| unnamed protein product [Vitis vinifera]
          Length = 596

 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 114/482 (23%), Positives = 199/482 (41%), Gaps = 61/482 (12%)

Query: 9   HHDDPSPDPHNKRKRSTFASHLDVPNL-----PPTIKTLCEIIAN--TPSPTVEDVLDKT 61
            H DP PD  N           D  N+     P  +  +C +I         +E VLD+ 
Sbjct: 131 QHSDPEPDGDN------VGGDFDEVNVNSGADPEEVSRVCRVIDELFALDRNMEAVLDEC 184

Query: 62  LIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMW 121
            + +S   V  VL+       PA +FF W+  +    H+   +N ++ +LG+   F++M 
Sbjct: 185 NVDLSHALVVGVLERFKHARKPAFRFFCWAGQKAGFTHNSRTYNAMMSVLGRTRQFESMM 244

Query: 122 DAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAIC 181
             +  M ++ +L++ TF+    ++  A   K A+  F++M++Y     V  +N LL  + 
Sbjct: 245 GMLGEMGEKGLLTMETFSIAIKAFAAAKERKKAVGVFELMKRYNFDAGVDTINCLLDNLG 304

Query: 182 RDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNV 241
           R     +A      ++ R  P+  TY +LL GW + +++  A +T+ EM I+ G+ PD +
Sbjct: 305 RAKLGKEAQALFEKLEDRFTPNLRTYTVLLNGWCRIKNLVEAGRTWNEM-IDKGFKPD-I 362

Query: 242 PAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWG 301
            A+ + L  LLK C    + +   + M  +G +P                N+R       
Sbjct: 363 IAHHTMLEGLLK-CKKKSDAIKLFEVMKAKGPSP----------------NVR------- 398

Query: 302 AMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKG 361
                         Y ++I   C   +   A++  DEMV +G  PD   Y  L       
Sbjct: 399 -------------TYTILIRDLCKQMKMQEAVEYFDEMVDSGCQPDAAVYTCLITGFGNQ 445

Query: 362 RKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETG 421
           +K+ +   L  EM +     +     A +++  +   P  A++ +K MI+N       T 
Sbjct: 446 KKMDKVYALLKEMKEKGCPADGRTYNALIKLMTNRQMPDDAVRIYKKMIQNGIQSTLHTY 505

Query: 422 NLLVAGLCDMHMLPEAVKYAKG---MAEKGIQVTPFALSKLKQILIKARKEAVYEELLKK 478
           N++      M        Y  G   M EKG++      +K      +A K  + EEL +K
Sbjct: 506 NMM------MKSYFYTRNYEMGCAEMIEKGMKAPQLDYNKFAADFSRAGKPDILEELARK 559

Query: 479 CK 480
            K
Sbjct: 560 MK 561


>gi|357115308|ref|XP_003559432.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
           mitochondrial-like [Brachypodium distachyon]
          Length = 570

 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 92/337 (27%), Positives = 144/337 (42%), Gaps = 36/337 (10%)

Query: 58  LDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLF 117
           +D   +RVS   V+++L+   S    A  FF W+  Q    H    +NL+VD+LGK   F
Sbjct: 117 MDCCPVRVSGRMVDKILRRFGSDWVAAFGFFMWAGAQEGYCHHADLYNLMVDILGKFKQF 176

Query: 118 DAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSL 176
           D +W  I+ M +   L SLAT   V      A+R  DAI  F+ M+Q+G   D  A+N+L
Sbjct: 177 DLLWGLIRQMDEIGCLVSLATMTKVMRRLAGANRWTDAIDAFNKMDQFGVVRDTKAMNAL 236

Query: 177 LSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGW 236
           L  +C++     A    + + G + PD  ++  L+ GW + R +  A+ T  EM  E G+
Sbjct: 237 LDTLCKEKSVKRARGVFQELRGVVPPDESSFNTLVHGWCQARMLNEARDTMKEME-EHGF 295

Query: 237 DPDNV-------------------------------PAYDSYLITL--LKGCDGIYETVN 263
            P  +                               P   +Y I +  L       E ++
Sbjct: 296 SPSVITYTSLIEAYCMEKDFQTVYAILNEMCSKGCRPNVITYTIVMHALGKAGRTQEALD 355

Query: 264 SLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLY 323
              ++   GC P  +F+            L  A  ++  M  R G  P   ++N MIS  
Sbjct: 356 VFDKVKRDGCVPDASFYNSIIYILGRAGRLEDANSVFDEMC-RTGIPPTVAIFNTMISAA 414

Query: 324 CYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVK 360
           C  ++   A+K+L +M      PDI+TY  L +   K
Sbjct: 415 CDHSQAENALKILVKMEEQSCKPDIKTYTPLLKLCCK 451



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 54/246 (21%), Positives = 105/246 (42%), Gaps = 14/246 (5%)

Query: 122 DAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAI 180
           D +K M++     S+ T+ S+  +Y +    +      + M   GC+ +V     ++ A+
Sbjct: 285 DTMKEMEEHGFSPSVITYTSLIEAYCMEKDFQTVYAILNEMCSKGCRPNVITYTIVMHAL 344

Query: 181 CRDGKTIDAWQFLRVV--DGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDP 238
            + G+T +A      V  DG + PD   Y  ++    +   + +A   F EM        
Sbjct: 345 GKAGRTQEALDVFDKVKRDGCV-PDASFYNSIIYILGRAGRLEDANSVFDEMC------R 397

Query: 239 DNVPAYDSYLITLLKGCDGIYETVNSLK---RMMERGCNPGMTFFKLAFEECLTGQNLRG 295
             +P   +   T++       +  N+LK   +M E+ C P +  +    + C   Q ++ 
Sbjct: 398 TGIPPTVAIFNTMISAACDHSQAENALKILVKMEEQSCKPDIKTYTPLLKLCCKRQWMKI 457

Query: 296 AEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILF 355
             F+   M  R    PD   Y ++++  C + +   +   L+EMV  G  P  +T++++ 
Sbjct: 458 LPFLICHMF-RKDISPDFSTYILLVTWLCRNGKPAQSCLFLEEMVLKGFMPKQETFDLVM 516

Query: 356 EFLVKG 361
           E L KG
Sbjct: 517 EKLDKG 522


>gi|224107985|ref|XP_002314678.1| predicted protein [Populus trichocarpa]
 gi|222863718|gb|EEF00849.1| predicted protein [Populus trichocarpa]
          Length = 497

 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 112/424 (26%), Positives = 181/424 (42%), Gaps = 53/424 (12%)

Query: 2   ARNDKRRHHDDPS---PDPHNKRKRSTFASHLDVPN---LPPTIKT---LCEIIAN--TP 50
           ++N K    DD     P   N  +     +H +VP+     P +     L EI+    + 
Sbjct: 12  SQNQKPSDPDDGDFVIPSLANWVENPNLETHRNVPSPLLFEPQVSNADKLSEILKKRYSS 71

Query: 51  SPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDL 110
              V   L+++ I  + E V Q+L    SH   A   F W+  Q +  H+P  ++ ++D+
Sbjct: 72  EAAVVKALNESGIDATNELVSQILMRFDSHCVVAFGVFIWAKNQTSYVHTPELYDYMIDI 131

Query: 111 LGKNCLFDAMWDAIKSMKKEN-VLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHD 169
           LGK   F  MW  ++ MK  N  +SLAT + V      A + KDAI  F  +E+YG   D
Sbjct: 132 LGKFKKFSLMWSLVEQMKGLNGYVSLATASKVMRRLAKARKYKDAIDVFRGIEKYGASKD 191

Query: 170 VFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGE 229
             ALN L+ A+ ++G   DA          I  D+ ++ IL+ G+ K R    A+K   E
Sbjct: 192 REALNVLMDALVKEGDVEDAHSAFLEFKDCITLDSSSFNILIHGYCKARMFVVARKIMEE 251

Query: 230 MVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSL-KRMMERGCNPGMTFFKLAFEECL 288
           M  + G+ PD V +Y  ++    +  D  +  V ++   M E+GC P +  +        
Sbjct: 252 ME-KHGFHPD-VVSYSCFIAAYCEQKD--FRNVEAVFDEMQEKGCKPNVITYTTVMHALG 307

Query: 289 TGQNLRGAEFIWGAMVGRIGFRPDTH---------------------------------- 314
             + L  A  ++  M  R G  PD+                                   
Sbjct: 308 KARQLNEALEVYEKM-KRNGCLPDSKFYSSLIYVLSQSGRIKDAWDVFEDMEKQGVCRNL 366

Query: 315 -MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNE 373
            +YN MIS  C  ++ G+A+KLL+ M  +   PD++TY  L +   + + +     L + 
Sbjct: 367 WVYNTMISSACAHSQGGSALKLLERMEGDSCKPDVKTYAPLLKMCCRRKSIKLLKFLLSH 426

Query: 374 MVKN 377
           M KN
Sbjct: 427 MFKN 430


>gi|255540805|ref|XP_002511467.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550582|gb|EEF52069.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 482

 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 104/439 (23%), Positives = 186/439 (42%), Gaps = 42/439 (9%)

Query: 29  HLDVPNLPPTIKTLCEIIAN-TPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKF 87
           H      PP   TL  +I N T S T+ + L    I+ + + V  +LK  ++H   A+ F
Sbjct: 19  HSTTTTSPPEATTLAALILNSTNSQTLAESLHSPSIQWTPQLVNTILKRLWNHGPKALHF 78

Query: 88  FRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASVFSSYV 146
           F+  ++  +  H   +++  +D+  +   F  +W  +  M+   +  S  TFA +   Y 
Sbjct: 79  FKILSHHPSYCHQASSFDHAIDICARLRDFRTLWFLVSRMRSCRLGPSPRTFAIIAERYA 138

Query: 147 VADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDT 206
              +   A+T F  M +YGC  D+ + N++L  +C+  +   A+   + + G+ K D  +
Sbjct: 139 AMGKPHRAVTVFMSMHEYGCFQDLSSFNTILDVLCKSKRVEMAYNLFKALKGKFKADCVS 198

Query: 207 YAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG------------ 254
           Y I++ GW   +    A +   EMV E G  P N+  Y+  L    +             
Sbjct: 199 YNIIVNGWCLIKRTPKALEMLKEMV-ERGLTP-NLTTYNIMLNGYFRAGQTNEAWGFFLE 256

Query: 255 -----CD-----------------GIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQN 292
                CD                  I    N   +M++ G  P +  F    +      +
Sbjct: 257 MKKRKCDIDVVTYTSVIHGLGVVGEIKRARNVFNQMVKDGVLPSVATFNALIQILCKKDS 316

Query: 293 LRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYN 352
           +  A  I+  MV R G+ P++  YN++I   C+  E   AM+L++ M  +   P++QTYN
Sbjct: 317 VENAILIFEEMVKR-GYVPNSITYNLVIRGLCHVGEMQRAMELMERMEDDDCEPNVQTYN 375

Query: 353 ILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVR---VYMDSDDPYVAIKFWKYM 409
           IL  +     ++ +   LF +M   + + N +     +    V  +SD+  VA K    M
Sbjct: 376 ILIRYFCDAGEIEKGLDLFQKMGNGDCLPNLDTYNILINSMFVRKNSDNLLVAGKLLVEM 435

Query: 410 IENHCSDLSETGNLLVAGL 428
           ++        T N ++ GL
Sbjct: 436 VDRGFLPRKLTFNRVLDGL 454



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/223 (22%), Positives = 94/223 (42%), Gaps = 37/223 (16%)

Query: 259 YETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNM 318
           +  V     M E GC   ++ F    +     + +  A  ++ A+ G+  F+ D   YN+
Sbjct: 144 HRAVTVFMSMHEYGCFQDLSSFNTILDVLCKSKRVEMAYNLFKALKGK--FKADCVSYNI 201

Query: 319 MISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNIL---------------FEFLVKGRK 363
           +++ +C    T  A+++L EMV  G  P++ TYNI+               F   +K RK
Sbjct: 202 IVNGWCLIKRTPKALEMLKEMVERGLTPNLTTYNIMLNGYFRAGQTNEAWGFFLEMKKRK 261

Query: 364 --------------------LWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAI 403
                               +  A  +FN+MVK+  + +     A +++    D    AI
Sbjct: 262 CDIDVVTYTSVIHGLGVVGEIKRARNVFNQMVKDGVLPSVATFNALIQILCKKDSVENAI 321

Query: 404 KFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAE 446
             ++ M++      S T NL++ GLC +  +  A++  + M +
Sbjct: 322 LIFEEMVKRGYVPNSITYNLVIRGLCHVGEMQRAMELMERMED 364



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 62/298 (20%), Positives = 120/298 (40%), Gaps = 47/298 (15%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVME 162
           ++N ++D+L K+   +  ++  K++K +      ++  + + + +  R   A+     M 
Sbjct: 164 SFNTILDVLCKSKRVEMAYNLFKALKGKFKADCVSYNIIVNGWCLIKRTPKALEMLKEMV 223

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDND--TYAILLEGWEKERDV 220
           + G   ++   N +L+   R G+T +AW F   +  R K D D  TY  ++ G     ++
Sbjct: 224 ERGLTPNLTTYNIMLNGYFRAGQTNEAWGFFLEMKKR-KCDIDVVTYTSVIHGLGVVGEI 282

Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFF 280
             A+  F +MV + G  P +V  +++ LI +L   D +   +   + M++RG  P    +
Sbjct: 283 KRARNVFNQMVKD-GVLP-SVATFNA-LIQILCKKDSVENAILIFEEMVKRGYVPNSITY 339

Query: 281 KLAFEE-CLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAM------ 333
            L     C  G+  R  E +    +      P+   YN++I  +C + E    +      
Sbjct: 340 NLVIRGLCHVGEMQRAMELM--ERMEDDDCEPNVQTYNILIRYFCDAGEIEKGLDLFQKM 397

Query: 334 --------------------------------KLLDEMVYNGAFPDIQTYNILFEFLV 359
                                           KLL EMV  G  P   T+N + + L+
Sbjct: 398 GNGDCLPNLDTYNILINSMFVRKNSDNLLVAGKLLVEMVDRGFLPRKLTFNRVLDGLL 455


>gi|15228825|ref|NP_188906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274241|sp|Q9LUJ4.1|PP248_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g22670, mitochondrial; Flags: Precursor
 gi|9279685|dbj|BAB01242.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643142|gb|AEE76663.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 562

 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 115/431 (26%), Positives = 189/431 (43%), Gaps = 35/431 (8%)

Query: 39  IKTLCEIIANTPSPTVEDV---LDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQL 95
           I  +C+ + N    + EDV   L K  + V++  V QVL+   +    A  FF W+  Q 
Sbjct: 102 IDKVCDFL-NKKDTSHEDVVKELSKCDVVVTESLVLQVLRRFSNGWNQAYGFFIWANSQT 160

Query: 96  NDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKK---ENVLSLATFASVFSSYVVADRVK 152
              HS + +N +VD+LGK   FD MW+ +  M K     +++L T + V      + +  
Sbjct: 161 GYVHSGHTYNAMVDVLGKCRNFDLMWELVNEMNKNEESKLVTLDTMSKVMRRLAKSGKYN 220

Query: 153 DAITTFDVMEQ-YGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAIL 210
            A+  F  ME+ YG K D  A+NSL+ A+ ++     A + FL++ D  IKPD  T+ IL
Sbjct: 221 KAVDAFLEMEKSYGVKTDTIAMNSLMDALVKENSIEHAHEVFLKLFDT-IKPDARTFNIL 279

Query: 211 LEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNS-LKRMM 269
           + G+ K R   +A+     M +   + PD V  Y S++    K  +G +  VN  L+ M 
Sbjct: 280 IHGFCKARKFDDARAMMDLMKV-TEFTPD-VVTYTSFVEAYCK--EGDFRRVNEMLEEMR 335

Query: 270 ERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNET 329
           E GCNP +  + +        + +  A  ++  M    G  PD   Y+ +I +   +   
Sbjct: 336 ENGCNPNVVTYTIVMHSLGKSKQVAEALGVYEKM-KEDGCVPDAKFYSSLIHILSKTGRF 394

Query: 330 GAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAA 389
             A ++ ++M   G   D+  YN +    +   +   A  L   M   E     E+C   
Sbjct: 395 KDAAEIFEDMTNQGVRRDVLVYNTMISAALHHSRDEMALRLLKRMEDEEG----ESCSPN 450

Query: 390 VRVYMDSDDPYVAIK-----------FWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAV 438
           V  Y     P + +               +M++N  S    T  LL+ GLC    + EA 
Sbjct: 451 VETYA----PLLKMCCHKKKMKLLGILLHHMVKNDVSIDVSTYILLIRGLCMSGKVEEAC 506

Query: 439 KYAKGMAEKGI 449
            + +    KG+
Sbjct: 507 LFFEEAVRKGM 517


>gi|225425882|ref|XP_002266563.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04130,
           mitochondrial [Vitis vinifera]
          Length = 496

 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 97/371 (26%), Positives = 161/371 (43%), Gaps = 48/371 (12%)

Query: 63  IRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWD 122
           I +SQ  V+ +L         A+  FRW+  +L  +H+P A++++VD+LGK    D M  
Sbjct: 74  IPMSQNLVDVLLHRFKDDWKSALGLFRWAESRLGYEHAPEAYDMMVDILGKLKQVDKMRA 133

Query: 123 AIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICR 182
            ++ M++ N++ L+T A        A   +DA+  FD +  +  + +  ++N LL  +C+
Sbjct: 134 LMEEMRQGNLVRLSTVAKAMRRLAGAGEWEDAVRVFDDLGNFELEKNTESMNLLLDTLCK 193

Query: 183 DGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEM------------ 230
           + K   A      +   I P+  T+ I + GW K   V  A+ T  EM            
Sbjct: 194 ERKVEQARAIFLELKPHISPNTHTFNIFIHGWCKANRVDEAEWTIQEMKGHGCRPCVISY 253

Query: 231 ---------------VIEV-------GWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRM 268
                          V E+       G  P NV  Y + + +L K  +   E +   +RM
Sbjct: 254 STIIQSYCRQSNFRKVYELLDDMQAQGCAP-NVVTYTTIMCSLTK-VEQFEEALQIAERM 311

Query: 269 MERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNE 328
              GC P   F+            LR A  ++   + + G  P+T  YN MI+++C+ ++
Sbjct: 312 RSVGCKPDTLFYNALIHTLGRAGQLREAVRVFEVEMPKTGVPPNTSTYNSMIAMFCHHSQ 371

Query: 329 TGAAMKLLDEMVYNGAF--PDIQTYNILFEFLVKGRKLWEASGLFNEMVKNEN------- 379
              A+ LL E + N  F  PDIQTY  + +   K  K+   S   ++MV   +       
Sbjct: 372 EQKALNLLRE-IENSTFCKPDIQTYYPVLKSCFKTGKIDSLSNFLDDMVNKHHLSLDVSA 430

Query: 380 --VLNHENCRA 388
             +L H  CRA
Sbjct: 431 YTLLIHGLCRA 441


>gi|449469499|ref|XP_004152457.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
           mitochondrial-like [Cucumis sativus]
 gi|449487784|ref|XP_004157799.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
           mitochondrial-like [Cucumis sativus]
          Length = 502

 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 101/423 (23%), Positives = 188/423 (44%), Gaps = 16/423 (3%)

Query: 63  IRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWD 122
           ++ + E V++VLK  + H   A++FF+   Y  +  HS  +++  +D+ G+   +  +W 
Sbjct: 74  LQFTPELVDKVLKRLWFHGPKALQFFKHLEYHPSYAHSASSFDHAIDIAGRMRDYKTVWA 133

Query: 123 AIKSMKKENV-LSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAIC 181
            +  M+   +  S  TFA +   +V A +   AI  F  M ++GC  D+ + N++L  +C
Sbjct: 134 LVARMRARRIGPSSKTFAIIAERFVAAGKPDRAIKVFLSMREHGCPQDLHSFNTILDILC 193

Query: 182 RDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDN 240
           +  +   A+    +V+ G+ K D  +Y I+  GW   +    A +   EMV E G  P  
Sbjct: 194 KSKRVEMAYNNLFKVLRGKFKADVVSYNIIANGWCLIKRTPKALEVLKEMV-ERGLTP-T 251

Query: 241 VPAYDSYLITLLKG---CDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAE 297
           +  Y+     LLKG      + E      +M ER     +  +            ++ A 
Sbjct: 252 ITTYN----ILLKGYFRAGQLKEAWEFFLQMKEREVEIDVVTYTTMVHGFGVVGEIKRAR 307

Query: 298 FIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEF 357
            ++  MVG  G  P T  YN MI + C  +    A+ + +EMV  G  P++ TYN++   
Sbjct: 308 KVFNEMVGE-GILPSTATYNAMIQVLCKKDSVENAVLMFEEMVKKGYVPNLTTYNVVIRG 366

Query: 358 LVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDL 417
           L     + +A      M  +    N +    A+R + D+ D    +  ++ M +    +L
Sbjct: 367 LFHAGNMDKAMEFIERMKTDGCEPNVQTYNVAIRYFCDAGDVEKGLSMFEKMGQGSLPNL 426

Query: 418 SETGNLLVAGLC---DMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEE 474
            +T N+L++ +        L  A K    M ++G     F  +++   L+    +A  +E
Sbjct: 427 -DTYNVLISAMFVRKKSEDLVVAGKLLLEMVDRGFIPRKFTFNRVLNGLLLTGNQAFAKE 485

Query: 475 LLK 477
           +L+
Sbjct: 486 ILR 488


>gi|115463377|ref|NP_001055288.1| Os05g0355200 [Oryza sativa Japonica Group]
 gi|55168028|gb|AAV43896.1| unknown protein [Oryza sativa Japonica Group]
 gi|55168069|gb|AAV43937.1| unknown protein [Oryza sativa Japonica Group]
 gi|113578839|dbj|BAF17202.1| Os05g0355200 [Oryza sativa Japonica Group]
          Length = 632

 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 113/439 (25%), Positives = 192/439 (43%), Gaps = 21/439 (4%)

Query: 53  TVEDVLDKTLIRVSQETVEQVL-KFSYSHPGPAVKFFRWSAYQLNDK----HSPYAWNLV 107
           ++E  L      +S+  V  VL +F ++H  P+ +FFRW+A          H+   +  +
Sbjct: 169 SLEAALTALSPPLSETLVLAVLDRFKHAHR-PSHRFFRWAAAAAAASGGFAHTTITYCKM 227

Query: 108 VDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCK 167
           V +LGK   F +M   I+ M KE  L +  F     S+  A  +K+A+  F++M  +G  
Sbjct: 228 VHILGKARQFQSMVALIQEMGKEGALCMDAFKIAIKSFAAAGEIKNAVGVFEMMRTHGFD 287

Query: 168 HDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTF 227
             V + N LL A+ ++G   +A Q    +  R  PD  +Y  L+  W   R++  A + +
Sbjct: 288 DGVESFNCLLVALAQEGLGREANQVFDRMRDRYAPDLRSYTALMLAWCNARNLVEAGRVW 347

Query: 228 GEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGM-TFFKLAFEE 286
            EM +E G  PD V  +++ +  LL+G     E V   + M  +G  P + T+  L  + 
Sbjct: 348 NEM-LENGLKPD-VVVHNTMIEGLLRG-QRRPEAVKMFELMKAKGPAPNVWTYTMLIRDH 404

Query: 287 CLTGQ---NLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNG 343
           C  G+    +R  E +       +G +PD   Y  ++  Y  +        LL+EM   G
Sbjct: 405 CKRGKMDMAMRCFEEMQD-----VGCQPDVATYTCLLVGYGNAKRMDRVTALLEEMTQKG 459

Query: 344 AFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPY-VA 402
             PD +TYN L + L       +A+ ++ +M+K             ++ Y      Y + 
Sbjct: 460 CPPDGRTYNALIKLLTNRNMPDDAARIYKKMIKKGLEPTIHTYNMMMKSYFLGGRNYMMG 519

Query: 403 IKFWKYMIENH-CSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQ 461
              W+ M     C D++    + + G        EA KY + M +KG++      +K   
Sbjct: 520 CAVWEEMHRKGICPDVNSY-TVFINGHIRHGRPEEACKYIEEMIQKGMKTPQIDYNKFAA 578

Query: 462 ILIKARKEAVYEELLKKCK 480
              KA K  +  EL +K K
Sbjct: 579 DFSKAGKPDILYELAQKVK 597


>gi|255552099|ref|XP_002517094.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223543729|gb|EEF45257.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 549

 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 103/403 (25%), Positives = 163/403 (40%), Gaps = 75/403 (18%)

Query: 83  PAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKK-ENVLSLATFASV 141
           PA+  F W+ +Q    H P  ++L+VD+LG+   F  MW+ +K M+  E  +SL T   V
Sbjct: 147 PALGLFTWAKHQTGYVHPPDLYDLMVDILGRRKKFSFMWELVKEMENLEGYVSLVTMKKV 206

Query: 142 FSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIK 201
                 A   +DA+  F  +E+ G + D+ ALN L+ A+ ++G    A+         I 
Sbjct: 207 MRRLARAGNFQDAVEAFRGIEKLGVRKDIEALNVLMDALVKEGSVEHAYSAFMEFKDSIH 266

Query: 202 PDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYET 261
            D  ++ ILL G+ K R + +A+K   EM  + G+ P NV +Y  ++    K  D  +  
Sbjct: 267 VDFQSFNILLHGYCKARKLDDARKIMDEMDKQ-GFQP-NVVSYTCFIELYCKLKD--FRN 322

Query: 262 VNSL-KRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAM----------------- 303
           V ++   M E+ C P +  + +        + +  A  ++  M                 
Sbjct: 323 VEAIFSEMQEKSCKPNVITYTIFMHALGKAKQVNKALEVYEMMKSNCCVPDASFYSSLIF 382

Query: 304 ----VGRI-------------GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFP 346
                GR+             G  PD   YN MI+  C   E   A+KLL  M  +   P
Sbjct: 383 VLTQSGRLKDAWDVFEDMKKQGVSPDLLTYNTMITSACTHLEEENALKLLRRMEEDSCKP 442

Query: 347 DIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFW 406
           DIQTY  L +   + +++     L N M KN                       ++I   
Sbjct: 443 DIQTYAPLLKMCCRKKRIKVLKFLLNHMFKNN----------------------ISIDLG 480

Query: 407 KYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
            Y+             LLV GLC    L  A  + + M  KG+
Sbjct: 481 TYV-------------LLVGGLCKSGKLELACSFFEEMVMKGL 510



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 64/309 (20%), Positives = 117/309 (37%), Gaps = 37/309 (11%)

Query: 84  AVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFS 143
           AV+ FR    +L  +    A N+++D L K    +  + A    K    +   +F  +  
Sbjct: 219 AVEAFR-GIEKLGVRKDIEALNVLMDALVKEGSVEHAYSAFMEFKDSIHVDFQSFNILLH 277

Query: 144 SYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICR--DGKTIDAWQFLRVVDGRIK 201
            Y  A ++ DA    D M++ G + +V +    +   C+  D + ++A  F  + +   K
Sbjct: 278 GYCKARKLDDARKIMDEMDKQGFQPNVVSYTCFIELYCKLKDFRNVEAI-FSEMQEKSCK 336

Query: 202 PDNDTYAILLEGWEKERDVANAKKTFGEMV-----------------------IEVGWD- 237
           P+  TY I +    K + V  A + +  M                        ++  WD 
Sbjct: 337 PNVITYTIFMHALGKAKQVNKALEVYEMMKSNCCVPDASFYSSLIFVLTQSGRLKDAWDV 396

Query: 238 ------PDNVPAYDSYLITLLKGCDGIYE--TVNSLKRMMERGCNPGMTFFKLAFEECLT 289
                     P   +Y   +   C  + E   +  L+RM E  C P +  +    + C  
Sbjct: 397 FEDMKKQGVSPDLLTYNTMITSACTHLEEENALKLLRRMEEDSCKPDIQTYAPLLKMCCR 456

Query: 290 GQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQ 349
            + ++  +F+   M  +     D   Y +++   C S +   A    +EMV  G  P  +
Sbjct: 457 KKRIKVLKFLLNHMF-KNNISIDLGTYVLLVGGLCKSGKLELACSFFEEMVMKGLIPRDR 515

Query: 350 TYNILFEFL 358
           TY +L E L
Sbjct: 516 TYKMLVEEL 524


>gi|293332689|ref|NP_001168961.1| hypothetical protein [Zea mays]
 gi|223974035|gb|ACN31205.1| unknown [Zea mays]
 gi|413921836|gb|AFW61768.1| hypothetical protein ZEAMMB73_696968 [Zea mays]
          Length = 521

 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 99/369 (26%), Positives = 164/369 (44%), Gaps = 11/369 (2%)

Query: 101 PYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDV 160
           P AW+L V   GK   FD  W+ ++ M+   VL+      +   Y  A  V  AI TFDV
Sbjct: 136 PEAWHLAVWAAGKARRFDLAWEIVRRMRNRGVLTCRVMVILMERYAAASEVNKAIKTFDV 195

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGW-EKERD 219
           ME++  + D     SLL A+C+     DA + L +         + + I+L+GW     D
Sbjct: 196 MEKFKIESDQSVFYSLLHALCKIKNIEDAEELLFLRKKFFPLTAEGFNIILDGWCNVITD 255

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTF 279
           VA AK+ + EM       PD + +Y + +I+       +++T+     M +RG  PG+  
Sbjct: 256 VAEAKRVWREMSNHC-ITPDGM-SY-TLMISCFSKVGNLFDTLRVYDEMKKRGWIPGIVV 312

Query: 280 FKLAFEECLTGQN-LRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDE 338
           +  +    LT +N ++ A  I+  +    G +PD   YN MI   C S +   A K+++ 
Sbjct: 313 YN-SLVYVLTRENCVKDAHNIFSKLTDE-GLQPDVETYNNMIVPLCESCKLDEARKVMES 370

Query: 339 MVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDD 398
           M+  G  P I TY+      +K   + E+  L  +M ++      +     +  +   ++
Sbjct: 371 MILRGIVPTISTYHA----FLKQEGIDESLKLLQKMKEDGCGPKSDTFVMLIDKFFLLNE 426

Query: 399 PYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSK 458
              A++ W  M +   S +      LV GL     +P A++Y   M EKG         +
Sbjct: 427 SGNALRVWNEMRKYEISPVRAHYMTLVQGLVKHGCIPRALEYYDEMKEKGFASDTQLDKE 486

Query: 459 LKQILIKAR 467
            K  L+K R
Sbjct: 487 FKTFLLKNR 495



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 53/237 (22%), Positives = 97/237 (40%), Gaps = 9/237 (3%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRV 195
           ++  + S +     + D +  +D M++ G    +   NSL+  + R+    DA   F ++
Sbjct: 277 SYTLMISCFSKVGNLFDTLRVYDEMKKRGWIPGIVVYNSLVYVLTRENCVKDAHNIFSKL 336

Query: 196 VDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
            D  ++PD +TY  ++    +   +  A+K    M++        VP   +Y   L +  
Sbjct: 337 TDEGLQPDVETYNNMIVPLCESCKLDEARKVMESMILR-----GIVPTISTYHAFLKQ-- 389

Query: 256 DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHM 315
           +GI E++  L++M E GC P    F +  ++         A  +W  M  +    P    
Sbjct: 390 EGIDESLKLLQKMKEDGCGPKSDTFVMLIDKFFLLNESGNALRVWNEM-RKYEISPVRAH 448

Query: 316 YNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFN 372
           Y  ++           A++  DEM   G   D Q       FL+K R  W  +G +N
Sbjct: 449 YMTLVQGLVKHGCIPRALEYYDEMKEKGFASDTQLDKEFKTFLLKNRDHWRGAGKYN 505


>gi|125540181|gb|EAY86576.1| hypothetical protein OsI_07956 [Oryza sativa Indica Group]
 gi|125582780|gb|EAZ23711.1| hypothetical protein OsJ_07414 [Oryza sativa Japonica Group]
 gi|215768726|dbj|BAH00955.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 500

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 122/484 (25%), Positives = 197/484 (40%), Gaps = 67/484 (13%)

Query: 24  STFASHLDVPNLPPTIKT--LCEIIANTPSP----TVEDVL-----DKTLIRVSQETVEQ 72
           S   S  DV N+  T++      +I N+ S     +V+D++     D + IR++   V+ 
Sbjct: 28  SCTQSSRDVSNVNLTVEEEEAARLIKNSLSKARKWSVQDLIQCLGADCSGIRLTGNIVDT 87

Query: 73  VLKFSYSHP-GPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKEN 131
           +L F +      A+ FF+W+  + + +H+ YA N +VDLLGK    D MW+ +  M    
Sbjct: 88  LL-FKFGDDWKSALGFFQWAQSRDDYRHTAYACNRMVDLLGKMRQIDQMWELLSDMHGRG 146

Query: 132 VLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ 191
           ++++ T A        A R KD +  FD +E  G + +   +N LL  +C++ K   A +
Sbjct: 147 LVTVETVAKSIRRLAGARRWKDVVLLFDKLEDMGLERNTETMNVLLDVLCKERKIEVARE 206

Query: 192 FLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEM--------------------- 230
              V+   I PD  T+ I + GW   R +  A  T  EM                     
Sbjct: 207 VFAVLSPHIPPDAYTFNIFVHGWCSIRRIDEAMWTIEEMKRRGFPPSVITYTTVLEAYCK 266

Query: 231 ------VIEV-------GWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGM 277
                 V EV       G  P NV  Y + ++T L  C+   E ++   RM   GC P  
Sbjct: 267 QRNFRRVYEVLDSMGSQGCHP-NVITY-TMIMTSLAKCERFEEALSVSHRMKSSGCKPDT 324

Query: 278 TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLD 337
            F+           +L  A  ++   +   G   +   YN MIS++CY      A+ +L 
Sbjct: 325 LFYNSLINLLGKSGHLFEASQVFRVEMPMNGVSHNLATYNTMISIFCYYGRDDDALNVLK 384

Query: 338 EMVYNGAFPDIQTYNILFE-FLVKGRKLWEASGLFNEMVKNEN---------VLNHENCR 387
           EM      PDIQ+Y  L   FL +  +      L +E+    N         +L H  CR
Sbjct: 385 EMEAQSCKPDIQSYRPLLRLFLSRRGQADTVRHLLSELTSKHNLGLDLDTYTLLIHGLCR 444

Query: 388 AAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEK 447
                     D   A + +  M+ +  +  S+T  +L+      +M     +    M+  
Sbjct: 445 VG--------DTVWAYQLFDEMVSSEIAPRSKTCVMLLDEAQRTNMETYVERIGNYMSSF 496

Query: 448 GIQV 451
           GI V
Sbjct: 497 GISV 500


>gi|125569053|gb|EAZ10568.1| hypothetical protein OsJ_00400 [Oryza sativa Japonica Group]
          Length = 514

 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 105/426 (24%), Positives = 189/426 (44%), Gaps = 10/426 (2%)

Query: 56  DVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLG--- 112
           +VL++    + ++ V +VL+   S+   A+ FF+W+A      H   A+  ++D+LG   
Sbjct: 81  EVLNQFADEMDEDVVLKVLQKQRSNWKVALSFFKWAAGLPQYNHGSRAYTEMLDILGRMK 140

Query: 113 KNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFA 172
           K  L   ++D I    +++V++   FA + + Y  A +V++AI  F   + YG + D+  
Sbjct: 141 KVRLMRQLFDEIPVESRQSVVTNRMFAVLLNRYAGAHKVQEAIDMFYKRKDYGFELDLVG 200

Query: 173 LNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVI 232
              LL ++CR     +A            P   ++ I+L GW  +  +A+AK+ + E +I
Sbjct: 201 FQILLMSLCRYKHVEEAEALFLQKKDEFPPVIKSWNIILNGWCVKGSLADAKRVWNE-II 259

Query: 233 EVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQN 292
                PD +  Y +++ +L K    +   V     M E+G NP +       ++    + 
Sbjct: 260 ASKLKPD-LFTYGTFINSLTKS-GKLSTAVKLFTSMWEKGINPDVAICNCIIDQLCFKKR 317

Query: 293 LRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYN 352
           +  A  I+G M  R G + D   YN +I  +C  N      +LLD+M   G  P+  TY+
Sbjct: 318 IPEALEIFGEMNDR-GCQADVATYNTLIKHFCKINRMEKVYELLDDMEVKGVSPNNMTYS 376

Query: 353 ILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIEN 412
            + +   K +   +   L   M K+   L+ +     + +Y+  D        W  M  N
Sbjct: 377 YILKTTEKPK---DVISLMQRMEKSGCRLDSDTYNLILNLYVSWDYEKGVQLVWDEMERN 433

Query: 413 HCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVY 472
                  +  ++V GL     L EA+ Y + M  +G+   P     +K I +K  + A  
Sbjct: 434 GSGPDQRSFTIMVHGLHSHDKLDEALHYYRTMESRGMTPEPRTKLLVKAIRMKKDEPATE 493

Query: 473 EELLKK 478
           E L +K
Sbjct: 494 EPLTRK 499


>gi|357129397|ref|XP_003566348.1| PREDICTED: pentatricopeptide repeat-containing protein At3g62470,
           mitochondrial-like [Brachypodium distachyon]
          Length = 649

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 107/456 (23%), Positives = 200/456 (43%), Gaps = 21/456 (4%)

Query: 36  PPTIKTLCEIIANTPSPTVEDVLDKTLIRVSQETVEQVL-----KFSYSHPGPAVKFFRW 90
           P  +  +C  IA+  +   +  L+ TL  +S    E ++     +F ++H  P+ +FF+W
Sbjct: 169 PEHVGRVCAAIADVMAAGADANLEATLSALSPPLSEALVLAVLDRFKHAH-RPSRRFFQW 227

Query: 91  SAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADR 150
           +A     +H+P  +  ++ +LGK   F+ M   ++ M K   L +  F     S+  A  
Sbjct: 228 AAASDEFEHTPVTYCKMLHILGKARQFETMVALVQEMGKAGALCMDAFKIAIKSFAAAGE 287

Query: 151 VKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAIL 210
           +K+A+  F++M  +G    V + N LL A+ ++G   +A +    +  +  PD  +Y  L
Sbjct: 288 IKNAVGVFEMMRVHGFDDGVESFNCLLVALAQEGLGKEAARVFDRMRDQYTPDLRSYTAL 347

Query: 211 LEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMME 270
           +  W   R++  A + + +M +E G  PD V  +++ +  LL+G     E V   + M  
Sbjct: 348 MLAWCNARNLVEAGRVWNDM-LEKGMKPDVV-VHNTMIDGLLRG-QRRPEAVKMFELMKA 404

Query: 271 RGCNPGM-TFFKLAFEECLTGQ---NLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYS 326
           +G  P + T+  L  + C  G+    +R  E +  A     G +P+   Y  ++  Y  +
Sbjct: 405 KGPPPNVWTYTMLIRDHCKQGKLDMAMRCFEEMQVA-----GCQPEVATYTCLLVGYGNA 459

Query: 327 NETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV-KNENVLNHEN 385
                   +L+EM   G  PD +TYN L + L       +A  ++ +M+ K      H  
Sbjct: 460 KRMDRVTAMLEEMAQKGCPPDGRTYNALIKLLTNRNMPDDAVRIYKKMITKGLEPTIHTY 519

Query: 386 CRAAVRVYMDSDDPYVAIKFWKYMIENH-CSDLSETGNLLVAGLCDMHMLPEAVKYAKGM 444
                  ++   +  +    W+ M     C D++    + + G        EA K+ + M
Sbjct: 520 NMMMKSYFLGGRNYAMGCAVWEEMHRKGICPDVNSY-TVFINGHIRHGRPAEACKFLEEM 578

Query: 445 AEKGIQVTPFALSKLKQILIKARKEAVYEELLKKCK 480
            +KG++      +K      KA K  +  EL +K K
Sbjct: 579 IQKGMKAPQIDYNKFAADFSKAGKPDILYELAQKVK 614


>gi|297719649|ref|NP_001172186.1| Os01g0151900 [Oryza sativa Japonica Group]
 gi|9663979|dbj|BAB03620.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|13872936|dbj|BAB44041.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|215768885|dbj|BAH01114.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255672883|dbj|BAH90916.1| Os01g0151900 [Oryza sativa Japonica Group]
          Length = 534

 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 105/426 (24%), Positives = 189/426 (44%), Gaps = 10/426 (2%)

Query: 56  DVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLG--- 112
           +VL++    + ++ V +VL+   S+   A+ FF+W+A      H   A+  ++D+LG   
Sbjct: 101 EVLNQFADEMDEDVVLKVLQKQRSNWKVALSFFKWAAGLPQYNHGSRAYTEMLDILGRMK 160

Query: 113 KNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFA 172
           K  L   ++D I    +++V++   FA + + Y  A +V++AI  F   + YG + D+  
Sbjct: 161 KVRLMRQLFDEIPVESRQSVVTNRMFAVLLNRYAGAHKVQEAIDMFYKRKDYGFELDLVG 220

Query: 173 LNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVI 232
              LL ++CR     +A            P   ++ I+L GW  +  +A+AK+ + E +I
Sbjct: 221 FQILLMSLCRYKHVEEAEALFLQKKDEFPPVIKSWNIILNGWCVKGSLADAKRVWNE-II 279

Query: 233 EVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQN 292
                PD +  Y +++ +L K    +   V     M E+G NP +       ++    + 
Sbjct: 280 ASKLKPD-LFTYGTFINSLTKS-GKLSTAVKLFTSMWEKGINPDVAICNCIIDQLCFKKR 337

Query: 293 LRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYN 352
           +  A  I+G M  R G + D   YN +I  +C  N      +LLD+M   G  P+  TY+
Sbjct: 338 IPEALEIFGEMNDR-GCQADVATYNTLIKHFCKINRMEKVYELLDDMEVKGVSPNNMTYS 396

Query: 353 ILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIEN 412
            + +   K +   +   L   M K+   L+ +     + +Y+  D        W  M  N
Sbjct: 397 YILKTTEKPK---DVISLMQRMEKSGCRLDSDTYNLILNLYVSWDYEKGVQLVWDEMERN 453

Query: 413 HCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVY 472
                  +  ++V GL     L EA+ Y + M  +G+   P     +K I +K  + A  
Sbjct: 454 GSGPDQRSFTIMVHGLHSHDKLDEALHYYRTMESRGMTPEPRTKLLVKAIRMKKDEPATE 513

Query: 473 EELLKK 478
           E L +K
Sbjct: 514 EPLTRK 519


>gi|297797613|ref|XP_002866691.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312526|gb|EFH42950.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 638

 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 101/404 (25%), Positives = 171/404 (42%), Gaps = 6/404 (1%)

Query: 52  PTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLL 111
           P +E  L+++ + +    +E+VL           +FF W+A Q    HS   +  +V +L
Sbjct: 99  PKLELALNESGVELRPGLIERVLNRCGDAGNLGYRFFVWAAKQPRYCHSIEVYKSMVKIL 158

Query: 112 GKNCLFDAMWDAIKSMKKEN--VLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHD 169
            K   F A+W  I+ M+KEN  ++    F  +   +  AD VK AI   D M  +G + D
Sbjct: 159 SKMRQFGAVWGLIEEMRKENPQLIEPELFVVLVQRFASADMVKKAIEVLDEMPTFGLEPD 218

Query: 170 VFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGE 229
            +    LL A+C+ G   DA +    +  R   +   +  LL GW +E  +  AK    +
Sbjct: 219 EYVFGCLLDALCKHGSVKDAAKLFEDMRLRFPVNLRYFTSLLYGWCREEKMMEAKYVLVQ 278

Query: 230 MVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLT 289
           M  E G++PD V   +  L++       + +  + LK M  RG  P  T + +  +    
Sbjct: 279 MK-EAGFEPDIVDYTN--LLSGYANAGKMADAYDLLKDMRRRGFEPNATCYTVLIQALCK 335

Query: 290 GQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQ 349
              +  A  ++  M  R     D   Y  ++S +C   +      +LD+M+  G  P   
Sbjct: 336 VDRMEEAMKVFVEM-ERYECEADVVTYTALVSGFCKWGKIDKCYLVLDDMIKKGLMPSQL 394

Query: 350 TYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYM 409
           TY  +     K  KL E   L  +M + E   +       +R+     +   A++ W  M
Sbjct: 395 TYMHIMAAHEKKEKLIECLELMEKMKQIEYHPDIGIYNVVIRLACKLGEVKEAVRLWNEM 454

Query: 410 IENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTP 453
             N  S  ++T  +++ GL     L EA  + K M  +G+   P
Sbjct: 455 EGNGLSPGADTFVIIINGLTSQGCLLEACDHFKEMVARGLFSVP 498


>gi|356495741|ref|XP_003516732.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640,
           mitochondrial-like [Glycine max]
          Length = 523

 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 101/420 (24%), Positives = 186/420 (44%), Gaps = 9/420 (2%)

Query: 35  LPPTIKTLCEIIANT--PSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSA 92
           LP  +  +  ++++   P   +E  L+    ++S   VEQVLK   +    A +FF W+ 
Sbjct: 43  LPDLVNEISRLLSDHRYPHHDLELSLNPFSAQLSTNLVEQVLKRCKNLGFSAHRFFLWAK 102

Query: 93  YQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLAT--FASVFSSYVVADR 150
                +HS  +++++V++LG    F  +WD +  M++ +   + +  F  +F +Y  A+ 
Sbjct: 103 SIPGFQHSVMSFHILVEILGSCKQFAILWDFLTEMRESHHYEINSEIFWLIFRAYSQANL 162

Query: 151 VKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAIL 210
              AI +F+ M+++G K  +  L+ LL  +C+      A Q       R      TY+IL
Sbjct: 163 PDGAIRSFNRMDEFGVKPTIHDLDKLLFILCKRKHVKQAQQLFHQAKNRFSLTAKTYSIL 222

Query: 211 LEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMME 270
           + GW +  D   A   F  M +E G  P ++ AY++ L  L KG   + E  N    M+ 
Sbjct: 223 ISGWGEIGDSEKACDLFQAM-LEQGC-PVDLLAYNNLLQALCKG-GRVDEAKNIFHDMLS 279

Query: 271 RGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETG 330
           +   P    + +         +++ A  +   M  R    P+   YN +I   C +    
Sbjct: 280 KRVEPDAFTYSIFIHSYCDADDVQSAFRVLDKM-RRYNLLPNVFTYNCIIKQLCKNEHVE 338

Query: 331 AAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAV 390
            A +LLDEM+  G  PD  +YN +  +     ++  A  L   M K+  + +       +
Sbjct: 339 EAYQLLDEMISRGVKPDTWSYNAIQAYHCDHCEVNRALRLMFRMEKDICLPDRHTYNMVL 398

Query: 391 RVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMH-MLPEAVKYAKGMAEKGI 449
           ++ +         + W+ M++        T ++++ G C     L EA KY + M ++GI
Sbjct: 399 KLLIRIGRFDKVTEVWENMVDKKFYPSVSTYSVMIHGFCKKKGKLEEACKYFEMMIDEGI 458


>gi|147789025|emb|CAN75780.1| hypothetical protein VITISV_012424 [Vitis vinifera]
          Length = 515

 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 109/445 (24%), Positives = 198/445 (44%), Gaps = 26/445 (5%)

Query: 39  IKTLCEIIANTPSPTVEDVLDKTLIR------VSQETVEQVLK---FSYSHPGPAVKFFR 89
           I  +  II + P P  +  L  TLI+      +S   VE VL     ++S+   A +FF+
Sbjct: 43  IDRVTRIINDHPFP--DHPLHSTLIQHVPKHLLSNTFVENVLGRLFAAHSNGFKAFEFFK 100

Query: 90  WSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKEN--VLSLATFASVFSSYVV 147
           +S        S  A+   + +L +   FD  W+ ++ +++ +  +L+L + + + S    
Sbjct: 101 FSLQHSEFCPSSDAFEKTLHILTRMRYFDKAWELMEEIQQTHPSLLTLKSMSIMLSRIAK 160

Query: 148 ADRVKDAITTFDVMEQ---YGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDN 204
               +D +  F  ME+   +G +      N LL A C   +  +A      +  R  P+ 
Sbjct: 161 FQSYEDTLEAFGRMEKNVFFGREFGANEFNVLLRAFCTQRQMKEARSVFHKMHSRFSPNT 220

Query: 205 DTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVP---AYDSYLITLLKGCDGIYET 261
            T  ILL G+++  DV   +  + EM I  G+ P++V      D+Y     KGC G  + 
Sbjct: 221 KTMNILLLGFKESGDVTAVELFYHEM-IRRGFKPNSVTYNIRIDAYCK---KGCFG--DG 274

Query: 262 VNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMIS 321
           +  L+ M +  C P +             QN+  A  ++  +  R   +PD  +YN  +S
Sbjct: 275 LRLLEEMEKANCPPTLETITTLIHGAGVAQNISRARELFNEISIR-NLQPDIGVYNAFMS 333

Query: 322 LYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVL 381
               S E  +A+ L+DEM   G   D  TY+ +F  L++   +   S L+++M++   V 
Sbjct: 334 SLIRSREVQSALMLMDEMEEEGIGHDSMTYHTMFRGLMRSNGIEGVSELYHKMIRRNFVP 393

Query: 382 NHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYA 441
                   ++ +  +    +++  W Y+I+          +LLV GLC    + EAV+ A
Sbjct: 394 KTRTIVMLMKWFCQNQQLDLSLDLWGYLIDRGYCPHGHALDLLVTGLCSHGKVKEAVECA 453

Query: 442 KGMAEKGIQVTPFALSKLKQILIKA 466
           K   E+G  ++      L++ L++A
Sbjct: 454 KQTLERGRPMSEGVFRMLERYLVEA 478


>gi|47848296|dbj|BAD22160.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 454

 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 110/437 (25%), Positives = 175/437 (40%), Gaps = 54/437 (12%)

Query: 59  DKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFD 118
           D + IR++   V+ +L         A+ FF+W+  + + +H+ YA N +VDLLGK    D
Sbjct: 28  DCSGIRLTGNIVDTLLFKFGDDWKSALGFFQWAQSRDDYRHTAYACNRMVDLLGKMRQID 87

Query: 119 AMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLS 178
            MW+ +  M    ++++ T A        A R KD +  FD +E  G + +   +N LL 
Sbjct: 88  QMWELLSDMHGRGLVTVETVAKSIRRLAGARRWKDVVLLFDKLEDMGLERNTETMNVLLD 147

Query: 179 AICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEM-------- 230
            +C++ K   A +   V+   I PD  T+ I + GW   R +  A  T  EM        
Sbjct: 148 VLCKERKIEVAREVFAVLSPHIPPDAYTFNIFVHGWCSIRRIDEAMWTIEEMKRRGFPPS 207

Query: 231 -------------------VIEV-------GWDPDNVPAYDSYLITLLKGCDGIYETVNS 264
                              V EV       G  P NV  Y + ++T L  C+   E ++ 
Sbjct: 208 VITYTTVLEAYCKQRNFRRVYEVLDSMGSQGCHP-NVITY-TMIMTSLAKCERFEEALSV 265

Query: 265 LKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYC 324
             RM   GC P   F+           +L  A  ++   +   G   +   YN MIS++C
Sbjct: 266 SHRMKSSGCKPDTLFYNSLINLLGKSGHLFEASQVFRVEMPMNGVSHNLATYNTMISIFC 325

Query: 325 YSNETGAAMKLLDEMVYNGAFPDIQTYNILFE-FLVKGRKLWEASGLFNEMVKNEN---- 379
           Y      A+ +L EM      PDIQ+Y  L   FL +  +      L +E+    N    
Sbjct: 326 YYGRDDDALNVLKEMEAQSCKPDIQSYRPLLRLFLSRRGQADTVRHLLSELTSKHNLGLD 385

Query: 380 -----VLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHML 434
                +L H  CR          D   A + +  M+ +  +  S+T  +L+      +M 
Sbjct: 386 LDTYTLLIHGLCRVG--------DTVWAYQLFDEMVSSEIAPRSKTCVMLLDEAQRTNME 437

Query: 435 PEAVKYAKGMAEKGIQV 451
               +    M+  GI V
Sbjct: 438 TYVERIGNYMSSFGISV 454


>gi|297599556|ref|NP_001047351.2| Os02g0601600 [Oryza sativa Japonica Group]
 gi|255671066|dbj|BAF09265.2| Os02g0601600 [Oryza sativa Japonica Group]
          Length = 466

 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 112/448 (25%), Positives = 181/448 (40%), Gaps = 59/448 (13%)

Query: 53  TVEDVL-----DKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLV 107
           +V+D++     D + IR++   V+ +L         A+ FF+W+  + + +H+ YA N +
Sbjct: 29  SVQDLIQCLGADCSGIRLTGNIVDTLLFKFGDDWKSALGFFQWAQSRDDYRHTAYACNRM 88

Query: 108 VDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCK 167
           VDLLGK    D MW+ +  M    ++++ T A        A R KD +  FD +E  G +
Sbjct: 89  VDLLGKMRQIDQMWELLSDMHGRGLVTVETVAKSIRRLAGARRWKDVVLLFDKLEDMGLE 148

Query: 168 HDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTF 227
            +   +N LL  +C++ K   A +   V+   I PD  T+ I + GW   R +  A  T 
Sbjct: 149 RNTETMNVLLDVLCKERKIEVAREVFAVLSPHIPPDAYTFNIFVHGWCSIRRIDEAMWTI 208

Query: 228 GEM---------------------------VIEV-------GWDPDNVPAYDSYLITLLK 253
            EM                           V EV       G  P NV  Y + ++T L 
Sbjct: 209 EEMKRRGFPPSVITYTTVLEAYCKQRNFRRVYEVLDSMGSQGCHP-NVITY-TMIMTSLA 266

Query: 254 GCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDT 313
            C+   E ++   RM   GC P   F+           +L  A  ++   +   G   + 
Sbjct: 267 KCERFEEALSVSHRMKSSGCKPDTLFYNSLINLLGKSGHLFEASQVFRVEMPMNGVSHNL 326

Query: 314 HMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFE-FLVKGRKLWEASGLFN 372
             YN MIS++CY      A+ +L EM      PDIQ+Y  L   FL +  +      L +
Sbjct: 327 ATYNTMISIFCYYGRDDDALNVLKEMEAQSCKPDIQSYRPLLRLFLSRRGQADTVRHLLS 386

Query: 373 EMVKNEN---------VLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNL 423
           E+    N         +L H  CR          D   A + +  M+ +  +  S+T  +
Sbjct: 387 ELTSKHNLGLDLDTYTLLIHGLCRVG--------DTVWAYQLFDEMVSSEIAPRSKTCVM 438

Query: 424 LVAGLCDMHMLPEAVKYAKGMAEKGIQV 451
           L+      +M     +    M+  GI V
Sbjct: 439 LLDEAQRTNMETYVERIGNYMSSFGISV 466


>gi|225460540|ref|XP_002272860.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61360
           [Vitis vinifera]
 gi|296081020|emb|CBI18524.3| unnamed protein product [Vitis vinifera]
          Length = 513

 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 109/445 (24%), Positives = 198/445 (44%), Gaps = 26/445 (5%)

Query: 39  IKTLCEIIANTPSPTVEDVLDKTLIR------VSQETVEQVLK---FSYSHPGPAVKFFR 89
           I  +  II + P P  +  L  TLI+      +S   VE VL     ++S+   A +FF+
Sbjct: 43  IDRVTRIINDHPFP--DHPLHSTLIQHVPKHLLSNTFVENVLGRLFAAHSNGFKAFEFFK 100

Query: 90  WSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKEN--VLSLATFASVFSSYVV 147
           +S        S  A+   + +L +   FD  W+ ++ +++ +  +L+L + + + S    
Sbjct: 101 FSLQHSEFCPSSDAFEKTLHILTRMRYFDKAWELMEEIQQTHPSLLTLKSMSIMLSRIAK 160

Query: 148 ADRVKDAITTFDVMEQ---YGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDN 204
               +D +  F  ME+   +G +      N LL A C   +  +A      +  R  P+ 
Sbjct: 161 FQSYEDTLEAFGRMEKNVFFGREFGANEFNVLLRAFCTQRQMKEARSVFHKMHSRFSPNT 220

Query: 205 DTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVP---AYDSYLITLLKGCDGIYET 261
            T  ILL G+++  DV   +  + EM I  G+ P++V      D+Y     KGC G  + 
Sbjct: 221 KTMNILLLGFKESGDVTAVELFYHEM-IRRGFKPNSVTYNIRIDAYCK---KGCFG--DG 274

Query: 262 VNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMIS 321
           +  L+ M +  C P +             QN+  A  ++  +  R   +PD  +YN  +S
Sbjct: 275 LRLLEEMEKANCPPTLETITTLIHGAGVAQNISRARELFNEISIR-NLQPDIGVYNAFMS 333

Query: 322 LYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVL 381
               S E  +A+ L+DEM   G   D  TY+ +F  L++   +   S L+++M++   V 
Sbjct: 334 SLIRSREVQSALMLMDEMEEEGIGHDSMTYHTMFRGLMRSNGIEGVSELYHKMIRRNFVP 393

Query: 382 NHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYA 441
                   ++ +  +    +++  W Y+I+          +LLV GLC    + EAV+ A
Sbjct: 394 KTRTIVMLMKWFCQNQQLDLSLDLWGYLIDRGYCPHGHALDLLVTGLCSHGKVKEAVECA 453

Query: 442 KGMAEKGIQVTPFALSKLKQILIKA 466
           K   E+G  ++      L++ L++A
Sbjct: 454 KQTLERGRPMSEGVFRMLERYLVEA 478


>gi|224107981|ref|XP_002314676.1| predicted protein [Populus trichocarpa]
 gi|222863716|gb|EEF00847.1| predicted protein [Populus trichocarpa]
          Length = 555

 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 98/365 (26%), Positives = 162/365 (44%), Gaps = 46/365 (12%)

Query: 53  TVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLG 112
            V + L+++ I  + + V Q+LK   +    A+  F W+  Q    H P  +N ++D+LG
Sbjct: 123 AVVEALNESGISATHDLVSQLLKRFSNQWLIALGVFIWAKNQTGYVHKPEIYNSMIDILG 182

Query: 113 KNCLFDAMWDAIKSMKKEN-VLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVF 171
           K+  F  MWD ++ M   N  +SL T   V    V   +  +AI  F  +E++G      
Sbjct: 183 KSRKFSLMWDLVQEMSGLNGYVSLVTMGKVMKRLVRDGKYNEAIDAFRGLEKFGLSKSTE 242

Query: 172 ALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMV 231
           A+N L+  + R+G+  DA       +G +  D  +Y IL  G+ K R   +A+KT  EM 
Sbjct: 243 AMNVLMDILARNGRVEDARAVALEFEGCLTLDYRSYNILSSGYCKARMFGDARKTMEEME 302

Query: 232 IEVGWDPDNVPAYDSYLITLLKGCDGIYETVN-SLKRMMERGCNPGMTFFKL-------- 282
            E G+ P NV +Y +++    +  D  +  V   L  M E+GC P +  + +        
Sbjct: 303 -ERGFHP-NVVSYTAFIEAYGEQKD--FRNVEIILNEMQEKGCPPDLITYTVYIRALGKA 358

Query: 283 -----AFEECLTGQNLRGAEFIWGA-----------MVGRI-------------GFRPDT 313
                A E C   + ++   F+ G            + GR+             G   D 
Sbjct: 359 RQINKALEIC---EEIKRNGFVLGTQFYCSLIHSLCLSGRLKDAWNIFEDVEKQGVGRDL 415

Query: 314 HMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNE 373
            MY  MIS  C  ++  +A+KLL +M  +   PD+QTY  L +   + + +     L N 
Sbjct: 416 GMYKAMISAACALSQDESALKLLHKMEEDSCKPDVQTYAPLLKMCCRKKSMKMLKFLLNH 475

Query: 374 MVKNE 378
           M +N+
Sbjct: 476 MFEND 480


>gi|125524449|gb|EAY72563.1| hypothetical protein OsI_00429 [Oryza sativa Indica Group]
          Length = 535

 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 104/426 (24%), Positives = 189/426 (44%), Gaps = 10/426 (2%)

Query: 56  DVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLG--- 112
           +VL++    + ++ V +VL+   S+   A+ FF+W+A      H   A+  ++D+LG   
Sbjct: 101 EVLNQFSDEMDEDVVLKVLQKQRSNWKVALSFFKWAAGLPQYNHGSRAYTEMLDILGRMK 160

Query: 113 KNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFA 172
           K  L   ++D I    +++V++   FA + + Y  A +V++AI  F   + YG + D+  
Sbjct: 161 KVRLMRQLFDEIPMESRQSVITNRMFAVLLNRYAGAHKVQEAIDMFYKRKDYGFELDLVG 220

Query: 173 LNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVI 232
              LL ++CR     +A            P   ++ I+L GW  +  +A+AK+ + E +I
Sbjct: 221 FQILLMSLCRYKHVEEAEALFLQKKDEFPPVIKSWNIILNGWCVKGSLADAKRVWNE-II 279

Query: 233 EVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQN 292
                PD +  Y +++ +L K    +   V     M E+G NP +       ++    + 
Sbjct: 280 ASKLKPD-LFTYGTFINSLTKS-GKLSTAVKLFTSMWEKGINPDVAICNCIIDQLCFKKR 337

Query: 293 LRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYN 352
           +  A  I+G M  R G + D   YN +I  +C  N      +LLD+M   G  P+  TY+
Sbjct: 338 IPEALEIFGEMNDR-GCQADVATYNTLIKHFCKINRMEKVYELLDDMEVKGVSPNNMTYS 396

Query: 353 ILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIEN 412
            + +   K +   +   L   M K+   L+ +     + +Y+  D        W  M  N
Sbjct: 397 YILKTTEKPK---DVISLMQRMEKSGCRLDSDTYNLILNLYVSWDYEKGVQLVWDEMERN 453

Query: 413 HCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVY 472
                  +  ++V GL     L EA+ Y + M  +G+   P     +K I +K  + A  
Sbjct: 454 GSGPDQRSFTIMVHGLHSHGKLDEALHYYRTMESRGMTPEPRTKLLVKAIRMKKDEPATE 513

Query: 473 EELLKK 478
           E+ L +
Sbjct: 514 EQPLTR 519


>gi|302783901|ref|XP_002973723.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
 gi|300158761|gb|EFJ25383.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
          Length = 581

 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 95/317 (29%), Positives = 147/317 (46%), Gaps = 9/317 (2%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           T+ ++ S      +V +A   FD M   G   DV A N LL A+ ++GK  +AW   + +
Sbjct: 117 TYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKTM 176

Query: 197 D---GRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLK 253
           D    ++ PD  TY  L++G+ +      A K F + VI  G+ PD V  Y+S L+ L +
Sbjct: 177 DMADRKVAPDLITYNTLIDGFCRVEKTDEAMKLFKD-VIAKGYMPDTV-TYNSILLGLAR 234

Query: 254 GCDGIYETVNSLKRMMERGCNP-GMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD 312
             + + E     K+M++ GC P G T+  +    C  G   R  E        R  F PD
Sbjct: 235 KSN-MDEAEEMFKKMVDSGCAPNGATYSIVLSGHCRVGNMARCLELYEEMTEKR--FSPD 291

Query: 313 THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFN 372
             + N +I + C + +   A K+L+EM   GA PD+ TYNIL + L K   + +A  LF+
Sbjct: 292 VLLCNAVIDMLCKAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFS 351

Query: 373 EMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMH 432
            MV N    +  +    +     ++  + A   +  MIE        T N+L+ GLC   
Sbjct: 352 TMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAG 411

Query: 433 MLPEAVKYAKGMAEKGI 449
            L EA      M+E  +
Sbjct: 412 KLDEAKDLLDVMSEHNV 428



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 88/378 (23%), Positives = 168/378 (44%), Gaps = 12/378 (3%)

Query: 99  HSP--YAWNLVVDLLGKNCLFDAMWDAIKSMK---KENVLSLATFASVFSSYVVADRVKD 153
           +SP   A+N ++D L K       W   K+M    ++    L T+ ++   +   ++  +
Sbjct: 146 YSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDMADRKVAPDLITYNTLIDGFCRVEKTDE 205

Query: 154 AITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLE 212
           A+  F  +   G   D    NS+L  + R     +A + F ++VD    P+  TY+I+L 
Sbjct: 206 AMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVDSGCAPNGATYSIVLS 265

Query: 213 GWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERG 272
           G  +  ++A   + + EM  E  + PD +    + +I +L     + +    L+ M + G
Sbjct: 266 GHCRVGNMARCLELYEEMT-EKRFSPDVLLC--NAVIDMLCKAKKVDDAHKVLEEMSKIG 322

Query: 273 CNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAA 332
             P +  + +  +       +  A  ++  MV   G  PD   Y+++++  C +N+   A
Sbjct: 323 AVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDN-GCAPDIVSYSVVLNGLCKTNKVHDA 381

Query: 333 MKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRV 392
             L D M+     PD+ T+NIL + L K  KL EA  L + M ++  + +   C   +  
Sbjct: 382 RVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDVMSEHNVLPDGVTCTTLMHG 441

Query: 393 YMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVT 452
                    A++ ++YM+E          N+++AGLC    L +A+ + K M +   + +
Sbjct: 442 LCRDKRTDEAVRLFQYMVEKGTVADVLPHNIVLAGLCREGKLAQALLFFKSMVKSDGEFS 501

Query: 453 P--FALSKLKQILIKARK 468
           P     + L   LI+A +
Sbjct: 502 PDVVTYTTLVNALIEAGR 519



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 70/316 (22%), Positives = 136/316 (43%), Gaps = 5/316 (1%)

Query: 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FL 193
           + T++++ S      +V +A+   + M + G   DV     ++  +CR GK  +A + F 
Sbjct: 10  VVTYSTIISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGKVDEADELFH 69

Query: 194 RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLK 253
           ++++     +   Y  L+ G  K+ ++  A K   EM  + G++PDN+  Y++ L  L +
Sbjct: 70  KMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASK-GYEPDNI-TYNTILSGLCR 127

Query: 254 GCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAM-VGRIGFRPD 312
               + E       M  RG +P +  +    +       +  A  ++  M +      PD
Sbjct: 128 -MGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDMADRKVAPD 186

Query: 313 THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFN 372
              YN +I  +C   +T  AMKL  +++  G  PD  TYN +   L +   + EA  +F 
Sbjct: 187 LITYNTLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFK 246

Query: 373 EMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMH 432
           +MV +    N       +  +    +    ++ ++ M E   S      N ++  LC   
Sbjct: 247 KMVDSGCAPNGATYSIVLSGHCRVGNMARCLELYEEMTEKRFSPDVLLCNAVIDMLCKAK 306

Query: 433 MLPEAVKYAKGMAEKG 448
            + +A K  + M++ G
Sbjct: 307 KVDDAHKVLEEMSKIG 322



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 74/325 (22%), Positives = 145/325 (44%), Gaps = 13/325 (4%)

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERD 219
           M + G + DV   ++++S +C+ GK  +A + +  + +  + PD  TY I+++   +   
Sbjct: 1   MAEKGFEPDVVTYSTIISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGK 60

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNP-GMT 278
           V  A + F +M IE G   + V AY++ +  L K  + I      L+ M  +G  P  +T
Sbjct: 61  VDEADELFHKM-IERGCSANTV-AYNALINGLCKD-ENIERAYKLLEEMASKGYEPDNIT 117

Query: 279 FFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLD- 337
           +  +    C  G+     +F + +M  R G+ PD   YN ++       +   A  L   
Sbjct: 118 YNTILSGLCRMGKVSEAKQF-FDSMPSR-GYSPDVVAYNGLLDALYKEGKVAEAWGLFKT 175

Query: 338 -EMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDS 396
            +M      PD+ TYN L +   +  K  EA  LF +++    + +     + +      
Sbjct: 176 MDMADRKVAPDLITYNTLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARK 235

Query: 397 DDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFAL 456
            +   A + +K M+++ C+    T +++++G C +  +   ++  + M EK         
Sbjct: 236 SNMDEAEEMFKKMVDSGCAPNGATYSIVLSGHCRVGNMARCLELYEEMTEKRFSPDVLLC 295

Query: 457 SKLKQILIKARK----EAVYEELLK 477
           + +  +L KA+K      V EE+ K
Sbjct: 296 NAVIDMLCKAKKVDDAHKVLEEMSK 320



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 66/276 (23%), Positives = 111/276 (40%), Gaps = 12/276 (4%)

Query: 105 NLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVMEQ 163
           N V+D+L K    D     ++ M K   +  + T+  +       + V  A   F  M  
Sbjct: 296 NAVIDMLCKAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVD 355

Query: 164 YGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDVAN 222
            GC  D+ + + +L+ +C+  K  DA   F R+++ ++ PD  T+ IL++G  K   +  
Sbjct: 356 NGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDE 415

Query: 223 AKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC---DGIYETVNSLKRMMERGCNPGMTF 279
           AK    +++ E    PD V        TL+ G        E V   + M+E+G    +  
Sbjct: 416 AKDLL-DVMSEHNVLPDGVTC-----TTLMHGLCRDKRTDEAVRLFQYMVEKGTVADVLP 469

Query: 280 FKLAFEECLTGQNLRGAEFIWGAMVGRIG-FRPDTHMYNMMISLYCYSNETGAAMKLLDE 338
             +          L  A   + +MV   G F PD   Y  +++    +     A+    +
Sbjct: 470 HNIVLAGLCREGKLAQALLFFKSMVKSDGEFSPDVVTYTTLVNALIEAGRVDQAVDYFQQ 529

Query: 339 MVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
           M  +G  PD   YN L   L K  +  +A  L   M
Sbjct: 530 MTGSGCAPDYVAYNTLMNGLRKQGRHIQADRLTQAM 565


>gi|6721172|gb|AAF26800.1|AC016829_24 hypothetical protein [Arabidopsis thaliana]
          Length = 572

 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/331 (24%), Positives = 139/331 (41%), Gaps = 35/331 (10%)

Query: 84  AVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFS 143
           A+   +W+      KHS  A+++ VD+LGK   +D M + ++ M+ + +++L T A +  
Sbjct: 168 ALGILKWAESCKGHKHSSDAYDMAVDILGKAKKWDRMKEFVERMRGDKLVTLNTVAKIMR 227

Query: 144 SYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPD 203
            +  A   ++A+  FD + ++G + +  ++N LL  +C++ +   A   L  +   I P+
Sbjct: 228 RFAGAGEWEEAVGIFDRLGEFGLEKNTESMNLLLDTLCKEKRVEQARVVLLQLKSHITPN 287

Query: 204 NDTYAILLEGWEKERDVANAKKTFGEMV-------------------------------- 231
             T+ I + GW K   V  A  T  EM                                 
Sbjct: 288 AHTFNIFIHGWCKANRVEEALWTIQEMKGHGFRPCVISYTTIIRCYCQQFEFIKVYEMLS 347

Query: 232 -IEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTG 290
            +E    P N   Y + +++ L       E +    RM   GC P   F+          
Sbjct: 348 EMEANGSPPNSITYTT-IMSSLNAQKEFEEALRVATRMKRSGCKPDSLFYNCLIHTLARA 406

Query: 291 QNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEM-VYNGAFPDIQ 349
             L  AE ++   +  +G   +T  YN MI++YC+ +E   A++LL EM   N   PD+ 
Sbjct: 407 GRLEEAERVFRVEMPELGVSINTSTYNSMIAMYCHHDEEDKAIELLKEMESSNLCNPDVH 466

Query: 350 TYNILFEFLVKGRKLWEASGLFNEMVKNENV 380
           TY  L     K   + E   L  EMV   ++
Sbjct: 467 TYQPLLRSCFKRGDVVEVGKLLKEMVTKHHL 497


>gi|225430190|ref|XP_002282419.1| PREDICTED: pentatricopeptide repeat-containing protein At5g11310,
           mitochondrial [Vitis vinifera]
 gi|296081989|emb|CBI20994.3| unnamed protein product [Vitis vinifera]
          Length = 597

 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 114/497 (22%), Positives = 204/497 (41%), Gaps = 48/497 (9%)

Query: 8   RHHDDPSPDPHNKRKRSTFASHLDVPNLPPTIK-----TLCEIIAN---TPSPTVEDVLD 59
           RH D P P         T    L+ PN  P        T+C ++ +   +    +ED L+
Sbjct: 46  RHWDLPIP---------TLKQSLN-PNPNPNFSQSDFSTICALLTDPALSSGAPLEDALN 95

Query: 60  KTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDA 119
           +T I+     ++ +     + P P    FRW+  Q   + S   +N ++D+L K+  FD+
Sbjct: 96  RTGIKPCSGLLQAIFSHFDASPKPLFTLFRWAMKQPGFESSMTLFNSMIDVLAKSRAFDS 155

Query: 120 MW----DAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTF------DVMEQYGCKHD 169
            W    D I+  ++  ++S  TFA +   Y  A     AI TF      D +     +  
Sbjct: 156 AWLLVLDRIEGGEEPELVSSNTFAVLIRRYARAGMTLSAIRTFEFAFSLDSIRDRDSEWS 215

Query: 170 VFALNSLLSAICRDGKTIDAWQFL---RVVDGRIKPDNDTYAILLEGWEKERDVANAKKT 226
           +F +  LL ++C++G    A ++    R +D    P    Y +LL GW + R +  A++ 
Sbjct: 216 LFKI--LLDSLCKEGHVRVASEYFDQQRGLDPSWVPSIRVYNVLLNGWFRSRKLKRAEQL 273

Query: 227 FGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLK---RMMERGCNPGMTFFKLA 283
           +  M  E      NV        TL++G   +  +  +++    M  +G  P +  +   
Sbjct: 274 WRTMKRE------NVKPTVVTYGTLVEGYCRMRRSEKAIELVGEMRGKGIEPNVIVYNPI 327

Query: 284 FEECLTGQNLRGA-EFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYN 342
            +        + A   +   +V   G  P    YN ++  +C + +   A K+L  M+  
Sbjct: 328 IDSLAEAGRFKEAMGMMERCLVSETG--PTISTYNSLVKGFCKAGDLVGASKVLKMMISR 385

Query: 343 GAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVA 402
           G  P + TYN  F +  +  K  E   L+ +M+++ +  +       +++  + +   +A
Sbjct: 386 GFDPTLTTYNYFFRYFSRCGKTEEGMNLYTKMIESGHTPDRLTYHLLIKMMCEEERLDLA 445

Query: 403 IKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQI 462
           ++  K M    C     T  +LV  LC MH L EA    + M  +GI        ++   
Sbjct: 446 VQVSKEMRARGCDLDLATSTMLVHLLCKMHRLEEAFAEFEDMIRRGIVPQYLTFERMNNA 505

Query: 463 LIKARKEAVYEELLKKC 479
           L   RK  + E   K C
Sbjct: 506 L---RKRGLTEMARKLC 519


>gi|224110770|ref|XP_002315631.1| predicted protein [Populus trichocarpa]
 gi|222864671|gb|EEF01802.1| predicted protein [Populus trichocarpa]
          Length = 452

 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 94/389 (24%), Positives = 161/389 (41%), Gaps = 47/389 (12%)

Query: 46  IANTPSPTVEDVLDKTL---IRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPY 102
           + ++P   +  + D+ +   I VS + V+++L         A+  FRW+  +   KH P 
Sbjct: 16  VGSSPDEILLSLADEQVCDNIEVSNDLVDKLLLRFKDDWKSALGVFRWAGLRPGYKHRPE 75

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVME 162
           A++++VD+LGK    D M + ++ M + ++++L T       +  A + +DA+  FD + 
Sbjct: 76  AYDMMVDILGKMKQMDQMRELLEEMNRNHLVTLNTVGKAMRRFSGAGKWEDAVRMFDELG 135

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVAN 222
            +G + +  ++N LL  +C++GK   A      +   I P+  T+ I + GW K   V  
Sbjct: 136 TFGLEKNAESMNLLLDTLCKEGKVEQARAIFLELKSHILPNAHTFNIFIHGWCKANLVDE 195

Query: 223 AKKTFGEMV---------------------------------IEVGWDPDNVPAYDSYLI 249
           A  T  EM                                  +E    P NV  Y + ++
Sbjct: 196 AHWTLQEMKGHAFRPCVISYSTIILFYCRQHNFSKVYELLDEMEAQGCPPNVVTYTTIIV 255

Query: 250 TLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGF 309
            L K      E +   +RM   GC P   FF             + A  ++   +   G 
Sbjct: 256 FLAKS-QNTEEALQLTQRMKSAGCKPDTPFFNSLIYILGRAGRFQEAVDVFEKEMPNAGV 314

Query: 310 RPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFP-DIQTYNILFEFLVKGRKLWEAS 368
             DT  YN MI++ C+      A+ LL EM  +  F  D QT+  L +  ++   +   S
Sbjct: 315 SRDTSTYNSMIAMLCHHGHVSKALSLLREMETSAPFKLDGQTFYPLLKSCLRTGDMNLLS 374

Query: 369 GLFNEMVKNEN---------VLNHENCRA 388
            L ++MVK            +L H  CRA
Sbjct: 375 QLLDDMVKKHQLSLDRSAYALLIHGLCRA 403


>gi|356544698|ref|XP_003540784.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
           mitochondrial-like [Glycine max]
          Length = 495

 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 101/450 (22%), Positives = 201/450 (44%), Gaps = 16/450 (3%)

Query: 37  PTIKTLCEIIANTPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFR-WSAYQL 95
           P+  T+ +++  +   TV + L K  I+ + + V +V+K  ++H   A++FF+    +  
Sbjct: 39  PSDATIAKLVLESDPRTVSEALTKPTIQWTPDLVNKVMKRLWNHGPKALQFFKHLDRHHP 98

Query: 96  NDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASVFSSYVVADRVKDA 154
           +  HSP +++  VD+  +   F++ W  +  M+   +  S  T A +   Y    +   A
Sbjct: 99  SYTHSPSSFDHAVDIAARMRDFNSAWALVGRMRSLRLGPSPKTLAILAERYASNGKPHRA 158

Query: 155 ITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGW 214
           + TF  M ++G + D+ + N+LL  +C+  +   A   L+ +  R +PD  TY IL  G+
Sbjct: 159 VRTFLSMAEHGIRQDLHSFNTLLDILCKSKRVETAHSLLKTLTSRFRPDTVTYNILANGY 218

Query: 215 EKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG---CDGIYETVNSLKRMMER 271
              +    A +   EMV + G +P  V  Y+    T+LKG    + I E       M +R
Sbjct: 219 CLIKRTPMALRVLKEMV-QRGIEPTMV-TYN----TMLKGYFRSNQIKEAWEFYLEMKKR 272

Query: 272 GCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGA 331
            C   +  +           +++ A+ ++  MV + G  P+   YN +I + C  +    
Sbjct: 273 KCEIDVVTYTTVIHGFGVAGDVKKAKRVFHEMV-KEGVVPNVATYNALIQVLCKKDSVEN 331

Query: 332 AMKLLDEMVYNGA-FPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAV 390
           A+ + +EM   G   P++ TYN++   L     +  A G    M ++      +     +
Sbjct: 332 AVVVFEEMAREGVCVPNVVTYNVVIRGLCHVGDMERALGFMERMGEHGLRACVQTYNVVI 391

Query: 391 RVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLC---DMHMLPEAVKYAKGMAEK 447
           R + D+ +   A++ +  M +  C    +T N+L++ +        L  A K    M ++
Sbjct: 392 RYFCDAGEVEKALEVFGKMGDGSCLPNLDTYNVLISAMFVRKKSEDLVVAGKLLMDMVDR 451

Query: 448 GIQVTPFALSKLKQILIKARKEAVYEELLK 477
           G     F  +++   L+    +   +E+L+
Sbjct: 452 GFLPRKFTFNRVLNGLVITGNQDFAKEILR 481


>gi|297839365|ref|XP_002887564.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297333405|gb|EFH63823.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 451

 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 85/365 (23%), Positives = 157/365 (43%), Gaps = 14/365 (3%)

Query: 70  VEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPY-----AWNLVVDLLGKNCLFDAMWDAI 124
           V  VLK  ++H   A++FF +    L++ H  Y     +++L +D+  +  +   +W  I
Sbjct: 57  VNSVLKRLWNHGPKALQFFHF----LDNHHREYVHDASSFDLAIDIAARLHIHPTVWSLI 112

Query: 125 KSMKKENV-LSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRD 183
             M+   +  S  TFA V   Y  + +   A+  F  M ++GC  D+ + N++L  +C+ 
Sbjct: 113 HRMRSLRIGPSPKTFAIVAERYASSGKPDKAVKLFLNMHEHGCFQDLASFNTILDVLCKS 172

Query: 184 GKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPA 243
            +   A++  R + GR   D  TY +++ GW   +    A +   EMV + G +P N+  
Sbjct: 173 KRVEKAYELFRALRGRFSADTVTYNVIVNGWCLIKRTPKALEVLKEMV-DRGINP-NLTT 230

Query: 244 YDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAM 303
           Y++ L    +    I +       M +R C   +  +            ++    ++  M
Sbjct: 231 YNTMLQGFFRAGQ-IRQAWEFFLEMKKRNCEIDVVTYTTVVHGFGVAGEIKRTRNVFDEM 289

Query: 304 VGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRK 363
           + R G  P    YN  I + C  +    A+ + +EMV  G  P++ TYN+L   L    K
Sbjct: 290 I-REGVLPSVATYNAFIQVLCKKDSVENAVVMFEEMVRKGYEPNVTTYNVLIRGLFHAGK 348

Query: 364 LWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNL 423
                 L   M       N +     +R Y +  +   A+  ++ M    C    +T N+
Sbjct: 349 FSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKMGTGDCLPNLDTYNI 408

Query: 424 LVAGL 428
           L++G+
Sbjct: 409 LISGM 413



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/211 (23%), Positives = 89/211 (42%), Gaps = 2/211 (0%)

Query: 268 MMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSN 327
           M E GC   +  F    +     + +  A  ++ A+ GR  F  DT  YN++++ +C   
Sbjct: 150 MHEHGCFQDLASFNTILDVLCKSKRVEKAYELFRALRGR--FSADTVTYNVIVNGWCLIK 207

Query: 328 ETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCR 387
            T  A+++L EMV  G  P++ TYN + +   +  ++ +A   F EM K    ++     
Sbjct: 208 RTPKALEVLKEMVDRGINPNLTTYNTMLQGFFRAGQIRQAWEFFLEMKKRNCEIDVVTYT 267

Query: 388 AAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEK 447
             V  +  + +       +  MI         T N  +  LC    +  AV   + M  K
Sbjct: 268 TVVHGFGVAGEIKRTRNVFDEMIREGVLPSVATYNAFIQVLCKKDSVENAVVMFEEMVRK 327

Query: 448 GIQVTPFALSKLKQILIKARKEAVYEELLKK 478
           G +      + L + L  A K +  EEL+++
Sbjct: 328 GYEPNVTTYNVLIRGLFHAGKFSRGEELMQR 358


>gi|357142780|ref|XP_003572691.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04130,
           mitochondrial-like [Brachypodium distachyon]
          Length = 501

 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 83/313 (26%), Positives = 129/313 (41%), Gaps = 36/313 (11%)

Query: 84  AVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFS 143
           A+  F+W+    N KH+ YA + ++DLLGK    D MWD +  M    ++++   A+   
Sbjct: 100 ALGLFQWAQSSGNYKHTAYACSRMIDLLGKMRQIDQMWDLLSDMHCRGLVTVEAAATSIR 159

Query: 144 SYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPD 203
               A R KDA+  FD +   G + +   +N LL A+C++ K   A +   V+   I+PD
Sbjct: 160 RLAGARRWKDAVLLFDKLGDMGLERNTETMNVLLDALCKEKKVEVARKVFLVLSPHIQPD 219

Query: 204 NDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPD------------------------ 239
             T+ I + GW   R +  A  T  EM  + G+ P                         
Sbjct: 220 AYTFNIFVHGWCSARRIDEAMWTIEEMKAQ-GFPPSVITYTTVLEAYCKQHNFRMVYEIL 278

Query: 240 ----------NVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLT 289
                     NV  Y + ++T L  C    E ++   RM   GC P   F+         
Sbjct: 279 DSMSSEGCHPNVITY-TMIMTSLAKCHMFEEALSVSHRMKSSGCKPDTLFYNSLINLLGK 337

Query: 290 GQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQ 349
             +L  A  ++   +   G       YN MIS++CY +    A+ +L EM      PD+Q
Sbjct: 338 AGHLSEASQVFQVEMPMNGVPRSLATYNTMISVFCYKDLDEDALSVLKEMETQSCKPDLQ 397

Query: 350 TYNILFEFLVKGR 362
           TY  L    +  R
Sbjct: 398 TYRPLLRLFLSRR 410


>gi|449435037|ref|XP_004135302.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04130,
           mitochondrial-like [Cucumis sativus]
          Length = 519

 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 96/396 (24%), Positives = 168/396 (42%), Gaps = 53/396 (13%)

Query: 45  IIANTPSPTVEDVLDKTL--------IRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLN 96
           IIA     + ED + ++L        I++S + V ++L+        A+  FRW+     
Sbjct: 74  IIAKVQVGSSEDEVFQSLLQDPVCNSIQLSHDLVYKLLQRFKDDWKSALGVFRWAESLSG 133

Query: 97  DKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAIT 156
            KH+P  +++++D LGK      M   ++ MK+  +++L T A     +  A + ++A+ 
Sbjct: 134 FKHTPDLYDILIDTLGKTKQLVKMRGMLEEMKEARLVTLDTVAKAMRRFAGAGQWENAVR 193

Query: 157 TFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEK 216
            FD +E YG + +  ++N LL  +C++ K   A Q    +   I P+ +T+ + + GW K
Sbjct: 194 IFDDLETYGLEKNTESMNVLLDTLCKEKKVEKARQMYLELKSHIAPNANTFNMFIHGWCK 253

Query: 217 ERDVANAKKTFGEMV---------------------------------IEVGWDPDNVPA 243
              +  A  T  EM                                  ++    P NV  
Sbjct: 254 VNKIDEAHWTLEEMKGYGHRPCVISYSTIILFYCHRCNFNKVYELLDEMDAQGCPANVIT 313

Query: 244 YDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAM 303
           Y + + +L K  +   E +   +RM   G  P   F+            +R A  ++   
Sbjct: 314 YTTIMCSLTKS-EEFEEALQIAERMKSAGYEPDTLFYNCLIHTLGRAGKVREAIHVFEVE 372

Query: 304 VGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYN-GAFPDIQTYNILFEFLVK-G 361
           +      P+T  YN MI++YC       AMKLL+EM  +    PD+QTY  L +   + G
Sbjct: 373 MPSKSVLPNTSTYNSMIAMYCRRAREEKAMKLLEEMQKSEHCKPDVQTYYPLLKSCFRTG 432

Query: 362 RKLWEASGLFNEMVKNEN---------VLNHENCRA 388
           +  ++ S L +EM+   +         +L H  CRA
Sbjct: 433 KTDYDLSNLLDEMINKHHLSLDISTYSLLIHGLCRA 468


>gi|449494995|ref|XP_004159705.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04130,
           mitochondrial-like [Cucumis sativus]
          Length = 488

 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 96/396 (24%), Positives = 168/396 (42%), Gaps = 53/396 (13%)

Query: 45  IIANTPSPTVEDVLDKTL--------IRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLN 96
           IIA     + ED + ++L        I++S + V ++L+        A+  FRW+     
Sbjct: 43  IIAKVQVGSSEDEVFQSLLQDPVCNSIQLSHDLVYKLLQRFKDDWKSALGVFRWAESLSG 102

Query: 97  DKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAIT 156
            KH+P  +++++D LGK      M   ++ MK+  +++L T A     +  A + ++A+ 
Sbjct: 103 FKHTPDLYDILIDTLGKTKQLVKMRGMLEEMKEARLVTLDTVAKAMRRFAGAGQWENAVR 162

Query: 157 TFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEK 216
            FD +E YG + +  ++N LL  +C++ K   A Q    +   I P+ +T+ + + GW K
Sbjct: 163 IFDDLETYGLEKNTESMNVLLDTLCKEKKVEKARQMYLELKSHIAPNANTFNMFIHGWCK 222

Query: 217 ERDVANAKKTFGEMV---------------------------------IEVGWDPDNVPA 243
              +  A  T  EM                                  ++    P NV  
Sbjct: 223 VNKIDEAHWTLEEMKGYGHRPCVISYSTIILFYCHRCNFNKVYELLDEMDAQGCPANVIT 282

Query: 244 YDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAM 303
           Y + + +L K  +   E +   +RM   G  P   F+            +R A  ++   
Sbjct: 283 YTTIMCSLTKS-EEFEEALQIAERMKSAGYEPDTLFYNCLIHTLGRAGKVREAIHVFEVE 341

Query: 304 VGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYN-GAFPDIQTYNILFEFLVK-G 361
           +      P+T  YN MI++YC       AMKLL+EM  +    PD+QTY  L +   + G
Sbjct: 342 MPSKSVLPNTSTYNSMIAMYCRRAREEKAMKLLEEMQKSEHCKPDVQTYYPLLKSCFRTG 401

Query: 362 RKLWEASGLFNEMVKNEN---------VLNHENCRA 388
           +  ++ S L +EM+   +         +L H  CRA
Sbjct: 402 KTDYDLSNLLDEMINKHHLSLDISTYSLLIHGLCRA 437


>gi|18396782|ref|NP_566222.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|79312733|ref|NP_001030630.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546763|sp|Q9M8W9.2|PP211_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g04130, mitochondrial; Flags: Precursor
 gi|332640519|gb|AEE74040.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332640520|gb|AEE74041.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 508

 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 81/331 (24%), Positives = 139/331 (41%), Gaps = 35/331 (10%)

Query: 84  AVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFS 143
           A+   +W+      KHS  A+++ VD+LGK   +D M + ++ M+ + +++L T A +  
Sbjct: 104 ALGILKWAESCKGHKHSSDAYDMAVDILGKAKKWDRMKEFVERMRGDKLVTLNTVAKIMR 163

Query: 144 SYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPD 203
            +  A   ++A+  FD + ++G + +  ++N LL  +C++ +   A   L  +   I P+
Sbjct: 164 RFAGAGEWEEAVGIFDRLGEFGLEKNTESMNLLLDTLCKEKRVEQARVVLLQLKSHITPN 223

Query: 204 NDTYAILLEGWEKERDVANAKKTFGEMV-------------------------------- 231
             T+ I + GW K   V  A  T  EM                                 
Sbjct: 224 AHTFNIFIHGWCKANRVEEALWTIQEMKGHGFRPCVISYTTIIRCYCQQFEFIKVYEMLS 283

Query: 232 -IEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTG 290
            +E    P N   Y + +++ L       E +    RM   GC P   F+          
Sbjct: 284 EMEANGSPPNSITYTT-IMSSLNAQKEFEEALRVATRMKRSGCKPDSLFYNCLIHTLARA 342

Query: 291 QNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEM-VYNGAFPDIQ 349
             L  AE ++   +  +G   +T  YN MI++YC+ +E   A++LL EM   N   PD+ 
Sbjct: 343 GRLEEAERVFRVEMPELGVSINTSTYNSMIAMYCHHDEEDKAIELLKEMESSNLCNPDVH 402

Query: 350 TYNILFEFLVKGRKLWEASGLFNEMVKNENV 380
           TY  L     K   + E   L  EMV   ++
Sbjct: 403 TYQPLLRSCFKRGDVVEVGKLLKEMVTKHHL 433


>gi|222423065|dbj|BAH19514.1| AT3G04130 [Arabidopsis thaliana]
          Length = 508

 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 81/331 (24%), Positives = 139/331 (41%), Gaps = 35/331 (10%)

Query: 84  AVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFS 143
           A+   +W+      KHS  A+++ VD+LGK   +D M + ++ M+ + +++L T A +  
Sbjct: 104 ALGILKWAESCKGHKHSSDAYDMAVDILGKAKKWDRMKEFVERMRGDKLVTLNTVAKIMR 163

Query: 144 SYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPD 203
            +  A   ++A+  FD + ++G + +  ++N LL  +C++ +   A   L  +   I P+
Sbjct: 164 RFAGAGEWEEAVGIFDRLGEFGLEKNTESMNLLLDTLCKEKRVEQARVVLLQLKSHITPN 223

Query: 204 NDTYAILLEGWEKERDVANAKKTFGEMV-------------------------------- 231
             T+ I + GW K   V  A  T  EM                                 
Sbjct: 224 AHTFNIFIHGWCKANRVEEALWTIQEMKGHGFRPCVISYTTIIRCYCQQFEFIKVYEMLS 283

Query: 232 -IEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTG 290
            +E    P N   Y + +++ L       E +    RM   GC P   F+          
Sbjct: 284 EMEANGSPPNSITYTT-IMSSLNAQKEFEEALRVATRMKRSGCKPDSLFYNCLIHTLARA 342

Query: 291 QNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEM-VYNGAFPDIQ 349
             L  AE ++   +  +G   +T  YN MI++YC+ +E   A++LL EM   N   PD+ 
Sbjct: 343 GRLEEAERVFRVEMPELGVSINTSTYNSMIAMYCHHDEEDKAIELLKEMESSNLCNPDVH 402

Query: 350 TYNILFEFLVKGRKLWEASGLFNEMVKNENV 380
           TY  L     K   + E   L  EMV   ++
Sbjct: 403 TYQPLLRSCFKRGDVVEVGKLLKEMVTKHHL 433


>gi|356540361|ref|XP_003538658.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640,
           mitochondrial-like [Glycine max]
          Length = 523

 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 114/481 (23%), Positives = 203/481 (42%), Gaps = 60/481 (12%)

Query: 33  PNLPPTIKTLCEIIANT--PSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRW 90
           P LP  +  +  ++++   P   +E  L+    ++S   V+QVLK   +    A +FF W
Sbjct: 41  PLLPDLVNEISRLLSDHRYPHHDLELSLNPFSAQISTNLVDQVLKRCNNLGFSAHRFFLW 100

Query: 91  SAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLAT--FASVFSSYVVA 148
           +      +HS  +++++V++LG    F  +WD +  M+      + +  F  +F +Y  A
Sbjct: 101 AKSIPGFQHSVMSFHILVEILGSCKQFAILWDFLIEMRGSCHYEINSEIFWLIFRAYSQA 160

Query: 149 DRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYA 208
           +    AI +F+ M+++G K  +   + LL  +C+      A QF      R      TY+
Sbjct: 161 NLPDGAIRSFNRMDEFGIKPTINDFDKLLFILCKTKHVKQAQQFFDQAKNRFLLTAKTYS 220

Query: 209 ILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG-------------- 254
           IL+ GW    D   A + F  M +E G  P ++ AY++ L  L KG              
Sbjct: 221 ILISGWGDIGDSEKAHELFQAM-LEQGC-PVDLLAYNNLLQALCKGGCVDEAKTIFHDML 278

Query: 255 ------------------CDG--IYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLR 294
                             CD   +   +  L +M      P +  +    +     +++ 
Sbjct: 279 SKRVEPDAFTYSIFIHSYCDADDVQSALRVLDKMRRYNILPNVFTYNCIIKRLCKNEHVE 338

Query: 295 GAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNIL 354
            A  +   M+ R G RPDT  YN + + +C   E   A++L+  M  +   PD  TYN++
Sbjct: 339 EAYLLLDEMISR-GVRPDTWSYNAIQAYHCDHCEVNRAIRLMFRMEKDNCLPDRHTYNMV 397

Query: 355 FEFLVK-GR-----KLWEASG--LFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFW 406
            + L++ GR     K+W   G   F   V   +V+ H  C+   ++         A K++
Sbjct: 398 LKLLIRIGRFDKVTKVWGNMGDKKFYPSVSTYSVMIHGFCKKKGKLEE-------ACKYF 450

Query: 407 KYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKA 466
           + MI+        T  +L   L  +  L     + + +A K  Q T +A+ +L  I+I  
Sbjct: 451 EMMIDEGIPPYVTTVEMLRNQLLGLGFL----DHIEILAAKMRQSTSYAIQELANIMIGN 506

Query: 467 R 467
           R
Sbjct: 507 R 507


>gi|413937640|gb|AFW72191.1| hypothetical protein ZEAMMB73_762171 [Zea mays]
          Length = 503

 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 97/380 (25%), Positives = 166/380 (43%), Gaps = 26/380 (6%)

Query: 63  IRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLND-KHSPYAWNLVVDLLGKNCLFDAMW 121
           +R++    + +L+       PA+ FF W+  +     H+PYA + +VDLLGK    D MW
Sbjct: 80  VRLTSGVADSLLRGCGDCWKPALGFFLWAQSRGGGYSHTPYACSRMVDLLGKTRQIDRMW 139

Query: 122 DAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAIC 181
           D +  M    ++++ T A        A + +DAI  FD +E  G + +   +N LL A+C
Sbjct: 140 DLLSEMHCRGLVTVDTVAKSIRRLAAARKWRDAILLFDQLEDLGLERNTETMNVLLDALC 199

Query: 182 RDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNV 241
           ++ K   A +   ++   I PD  T+ I + GW   R +  A  T  EM    G+ P  V
Sbjct: 200 KEKKVELAREVFVMLSPHIAPDAYTFNIFVHGWCSVRRIDEALWTIEEMKTR-GF-PPIV 257

Query: 242 PAYDSYLITLLKGCD--GIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFI 299
             Y + L    K  +   +YE ++S   M  +GC+P +  + +        +    A  +
Sbjct: 258 ITYTAVLEAYCKQRNFRRVYEVLDS---MGSQGCHPNVITYTMIMTSLTKCERFEEALSV 314

Query: 300 WGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLD-EMVYNGAFPDIQTYNILFEFL 358
              M    G +PDT  YN +I+L   +     A ++   EM  NG   ++ TYN +   L
Sbjct: 315 SDRMKSS-GCKPDTLFYNALINLLGRAGHLFEANQVFRVEMPRNGVLRNVATYNTMISIL 373

Query: 359 VKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLS 418
            +  +  +A G+  EM         ++C+  ++ Y       +  +     +    S+L 
Sbjct: 374 CQYGRDDDALGVLKEM-------EAQSCKPDLQTYQPLLRLLLGRRGQAAAVHRLLSELR 426

Query: 419 ---------ETGNLLVAGLC 429
                    +T  LL+ GLC
Sbjct: 427 DRNGLGLDLDTYTLLIHGLC 446


>gi|297843042|ref|XP_002889402.1| hypothetical protein ARALYDRAFT_470202 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297335244|gb|EFH65661.1| hypothetical protein ARALYDRAFT_470202 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 490

 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 105/432 (24%), Positives = 200/432 (46%), Gaps = 15/432 (3%)

Query: 54  VEDVLDKTLIRVSQETVEQVLK---FSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDL 110
           +++ L  + I +S++ +++VLK   FS+ +P   ++F+R++  +    HS ++ + ++ +
Sbjct: 57  LKESLSSSGIHLSKDLIDRVLKRVRFSHGNPIQTLEFYRYAGARRGFYHSSFSLDTMLYI 116

Query: 111 LGKNCLFDAMWDAIKSMKKEN--VLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKH 168
           LG+N  FD +W+ +   K+++  ++S  T   V         V+  + +F   ++     
Sbjct: 117 LGRNRKFDQIWEILIETKRKDRSLISPRTMQVVLGRVAKLCSVRQTVESFWKFKRLVPDF 176

Query: 169 -DVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTF 227
            D    N+LL  +C++    DA      +  + +PD  T+ ILL GW+   +     +  
Sbjct: 177 FDTACFNALLRTLCQEKSMTDARNVYHSLKHQFQPDLQTFNILLSGWKSSEEAEAFFEEM 236

Query: 228 GEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPG-MTFFKLAFEE 286
                  G  PD V  Y+S +    K  + I +    + +M E    P  +T+  +    
Sbjct: 237 KGK----GLKPD-VVTYNSLIDVYCKDRE-IEKAYKLIDKMREEDETPDVITYTTIIGGL 290

Query: 287 CLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFP 346
            L GQ  +  E +    +   G  PD   YN  I  YC +   G A KL+DEMV  G  P
Sbjct: 291 GLIGQPDKAREVL--KEMKEYGCYPDVAAYNAAIRNYCIARRLGDADKLVDEMVKKGLSP 348

Query: 347 DIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFW 406
           +  TYN+ F  L     L  +  L+  M+ N  + N ++C   ++++   +   +A++ W
Sbjct: 349 NATTYNLFFRVLSLANDLGRSWELYERMLGNGCLPNTQSCMFLIKMFKRHEKVDMAMRLW 408

Query: 407 KYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKA 466
           + M+       S   ++L+  LCD+  + EA K    M EKG + +  +  ++K ++  A
Sbjct: 409 EDMVVKGFGSYSLVSDVLLDLLCDLAKVEEAEKCLLEMVEKGHRPSNVSFKRIKLLMELA 468

Query: 467 RKEAVYEELLKK 478
            K      L++K
Sbjct: 469 NKHDEVNNLIQK 480


>gi|308082018|ref|NP_001183846.1| uncharacterized protein LOC100502439 [Zea mays]
 gi|238014984|gb|ACR38527.1| unknown [Zea mays]
 gi|414872746|tpg|DAA51303.1| TPA: hypothetical protein ZEAMMB73_971718 [Zea mays]
          Length = 623

 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 96/349 (27%), Positives = 151/349 (43%), Gaps = 38/349 (10%)

Query: 57  VLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCL 116
            +D   +RVS   V +VL    +    A  FF W+  Q    H   +++++VD+LGK   
Sbjct: 153 TMDCCPVRVSARLVSKVLSRFSNDWVAAFGFFMWAGTQEGYCHCADSYDMMVDILGKFKQ 212

Query: 117 FDAMWDAIKSMKK-ENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNS 175
           FD M   I  M +   ++SLAT   V      A+R  DAI  F  M+++G   D  A+N 
Sbjct: 213 FDLMCGLIGQMHEIGGLVSLATMTKVMRRLCGANRWSDAIDAFHKMDRFGVAKDTKAMNV 272

Query: 176 LLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEM----- 230
           LL  +C++     A    + + G I PD  ++  L+ GW K R +  A++T  EM     
Sbjct: 273 LLDTLCKERSVKRARGAFQALKGTIPPDESSFNTLVHGWCKARMLKEARETMKEMERHGF 332

Query: 231 ---------VIEVGWDPDNVPAYDSYLITL-LKGC-----------------DGIYETVN 263
                    +IE      +    D  L  +  KGC                     E ++
Sbjct: 333 SPSVTTYTCLIEAYCMEKDFQTVDGILDEMHTKGCTPNIITYTIVMHALGKAGRTQEALD 392

Query: 264 SLKRMMERGCNPGMTFFK-LAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISL 322
           +  ++ + GC    +F+  L +  C  G+ L+ A F+   M  R G  P+   +N +IS 
Sbjct: 393 TFDKVKQDGCALDASFYNCLIYILCRAGR-LQDANFVVEEM-HRTGISPNLTTFNTLISA 450

Query: 323 YCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLF 371
            C  +    A+KLL +M      PDI+TY  L +     R+ W  + LF
Sbjct: 451 ACDHSLAENALKLLVQMEEQSCNPDIKTYTPLLKLCC--RRKWVKTLLF 497


>gi|224107983|ref|XP_002314677.1| predicted protein [Populus trichocarpa]
 gi|222863717|gb|EEF00848.1| predicted protein [Populus trichocarpa]
          Length = 481

 Score =  114 bits (286), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 112/438 (25%), Positives = 180/438 (41%), Gaps = 39/438 (8%)

Query: 50  PSP-TVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVV 108
           PS   V   LD++ I  + + V Q+L+   +    A+  F W+  Q    H+P  ++LVV
Sbjct: 47  PSEDAVVKALDESGINATNDLVSQLLERFSNQWITALGVFIWAKNQTGYVHTPRLYDLVV 106

Query: 109 DLLGKNCLFDAMWDAIKSMKKEN-VLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCK 167
           D+LGK   F  MW  +  M + N  +S +T + V      +   KD I     +E+Y  K
Sbjct: 107 DILGKCKKFGIMWKVVNEMNELNGQVSFSTMSIVVRRLASSGMYKDVIDVLRGLEKYRVK 166

Query: 168 HDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTF 227
            D  ALN ++ A+ + G   DA+         I  D+ ++ IL+ G+ + R + +A+KT 
Sbjct: 167 KDTVALNMVMHALAKQGGAKDAYSVFLEFKDSITLDSHSFNILIHGYCEARMLDDARKTM 226

Query: 228 GEM-----------------------------VI-----EVGWDPDNVPAYDSYLITLLK 253
            EM                             VI     E G +PD V AY  Y+  L K
Sbjct: 227 EEMEKHGFRPDASSYTCFIKAYCKQKDFRNVEVILNEMGEKGCEPD-VIAYSIYIRALGK 285

Query: 254 GCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDT 313
               I E +   ++M +  C P   FF            L  A +++  M    G   D 
Sbjct: 286 A-RKINEALEVYEKMNKNSCKPDAKFFSTLIYVLGRSGRLNDAWYVFEDMENH-GVSRDL 343

Query: 314 HMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNE 373
             YN MI   C + +  +A+KLL+ M  N   PD++TY  L +   K + +     L + 
Sbjct: 344 WTYNAMIYHACANRQGNSALKLLERMEVNSCKPDLETYQPLLKMCCKMKDMKVLKFLLSH 403

Query: 374 MVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHM 433
           M  N   ++       +R   +S     A  F++  + N       T  +L+  L   +M
Sbjct: 404 MFNNNVRIDLSTYALLIRELAESGKLEHACFFFQDAVLNGIVPKDRTYEILLKELGQNNM 463

Query: 434 LPEAVKYAKGMAEKGIQV 451
           +    K  K M +   Q+
Sbjct: 464 VEMKGKIEKLMLQAKEQI 481


>gi|356560394|ref|XP_003548477.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15010,
           mitochondrial-like [Glycine max]
          Length = 612

 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 114/439 (25%), Positives = 192/439 (43%), Gaps = 28/439 (6%)

Query: 29  HLDVPNLPPTIKTLCEI---IANTPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAV 85
           HL    L   +KT+  I   + + PS  ++  L+   I +S E V +VL  + +    A 
Sbjct: 118 HLRDDGLAKDVKTILAIMHEVGSGPS-QIKQKLEHCSIVLSPELVVEVLSRTRNDWEAAF 176

Query: 86  KFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMK-KENVLSLATFASVF-- 142
            FF W+  Q    HS   ++ ++ +LGK   FD  W+ I+ M+   N LSL T  ++   
Sbjct: 177 TFFLWAGKQPGYAHSVREYHSMISILGKMRKFDTAWNLIEEMRGGRNGLSLVTPQTLLIM 236

Query: 143 -SSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIK 201
              Y     V  AI TF   +++  +  +   +SLLSA+CR     DA ++L   +  + 
Sbjct: 237 IRKYCAVHDVARAINTFYAYKRFNFRVGLEEFHSLLSALCRYKNVQDA-EYLLFCNKDVF 295

Query: 202 P-DNDTYAILLEGW-EKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIY 259
           P D  ++ I+L GW       ++A++ + EM+        +V +Y S +I+       +Y
Sbjct: 296 PLDTKSFNIILNGWCNLIVSTSHAERIWHEMIKRR--IQHDVVSYGS-IISCYSKSSKLY 352

Query: 260 ETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMM 319
           + +     M +R   P    +         G+ ++ A  + G M G     PD   YN +
Sbjct: 353 KVLRMFDEMKKRKITPDRKVYNAVIYALAKGRLVKEAVNLIGTMEGN-DVTPDVVTYNSL 411

Query: 320 ISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM----- 374
           I   C +++   A +L DEM+     P IQT++  F  L    +++E      E+     
Sbjct: 412 IKPLCKAHKVDEAKQLFDEMLKRHLSPTIQTFHAFFRILRTKEEVFELLDKMKELRCYPT 471

Query: 375 VKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHML 434
           ++   +L  + CR     +   DD +   K W  M E+  S    +  +L+ GL     L
Sbjct: 472 IETYIMLIRKFCR-----WCQLDDVF---KIWDAMREDEISHDRSSYIVLIHGLFLNGKL 523

Query: 435 PEAVKYAKGMAEKGIQVTP 453
            EA +Y   M EKG    P
Sbjct: 524 EEAQRYYAEMQEKGFLPEP 542


>gi|357145431|ref|XP_003573640.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80880,
           mitochondrial-like [Brachypodium distachyon]
          Length = 523

 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 99/396 (25%), Positives = 167/396 (42%), Gaps = 18/396 (4%)

Query: 81  PGPAVKFFRWSAY-----QLNDKHSP--YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL 133
           P  A    RW  Y           SP   AW+L +   GK   FD  W A++ M    VL
Sbjct: 114 PEAAALAIRWGEYCSASSGAEGAGSPPAEAWHLAIWAAGKAGRFDLAWAAVRRMLHRGVL 173

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           +      V   Y  A  ++ A+ TFDVME++  + D     SLL A+C+     DA + L
Sbjct: 174 TRRAMIIVMERYAAASELEKALKTFDVMEKFKVQADQAVFYSLLRALCKSKNIEDAEELL 233

Query: 194 RVVDGRIKPDNDTYAILLEGW-EKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
            +         + + I+L+GW     DVA AK+ + EM       PD      + +++  
Sbjct: 234 LMRKKFFPLTAEGFNIILDGWCNIIIDVAEAKRVWKEMS-SYCITPDGTSY--TLMVSCF 290

Query: 253 KGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQN-LRGAEFIWGAMVGRIGFRP 311
                +++T+     M +RG  PG+  +  +    LT +N ++ A+ I+  ++   G + 
Sbjct: 291 SKVGNLFDTLRVYDEMKKRGWTPGIGVYN-SLVYVLTRENCMKDAKKIFSKIIDE-GLQL 348

Query: 312 DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLF 371
           +   YN MI   C S +   A  ++ +M+  G  P I TY+      +K   + E   L 
Sbjct: 349 NVETYNSMIIPLCESCKLDEARIMMGDMIMKGIVPTILTYHA----FLKQEGVDETLQLL 404

Query: 372 NEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDM 431
            +M +N    N +     +  ++ +++   A++ W  MI    S        ++ GL   
Sbjct: 405 RKMKENGCGPNSDTFLMLIDKFIQANESGNALRVWNEMIRYDISPAYSHYMAVIQGLVKH 464

Query: 432 HMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKAR 467
             +P A++Y   M  KG    P    + K  L+  R
Sbjct: 465 GCIPRALEYYDEMKAKGFASDPILDREFKTFLLANR 500


>gi|297733848|emb|CBI15095.3| unnamed protein product [Vitis vinifera]
          Length = 815

 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 88/362 (24%), Positives = 169/362 (46%), Gaps = 31/362 (8%)

Query: 41  TLCEIIANTPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHS 100
           T+  ++  T S T+   L+K  +  +   V++VLK  ++H   A++FF+   Y     H 
Sbjct: 41  TIVNLVLKTDSQTLTRTLEKYPVEWTPNLVDRVLKLLWNHGPKALQFFKSLDYHPTYAHV 100

Query: 101 PYAWNLVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASVFSSYVVADRVKDAITTFD 159
             +++  +D+ G+   +  +W  +  M+   +  +  TFA +   YV A +   AI  F 
Sbjct: 101 SSSFDHAIDIAGRLRDYKTLWTLVDRMRTRRLGPNPKTFAIITERYVSAGKPDRAIKIFF 160

Query: 160 VMEQYGCKHDVFALNSLLSAIC--------------------RDGKTIDAWQ-FLRVVDG 198
            M ++GC  D+ + N++L  +C                    R G+  +AW+ FL++   
Sbjct: 161 SMHEHGCVQDLNSFNTILDVLCKSKRVEMADNKLFKVFRGFFRAGQLKEAWEFFLQMKKR 220

Query: 199 RIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGI 258
           + + D  TY  ++ G+    +V  A++ F EM+ E G  P +V  Y++++  L K  D +
Sbjct: 221 KCEIDVVTYTTVVHGFGVAGEVRKAQRVFNEMIGE-GVLP-SVATYNAFIQVLCKK-DNV 277

Query: 259 YETVNSLKRMMERGCNPGMTFFKLAFEE-CLTGQNLRGAEFIWGAMVGRIGFRPDTHMYN 317
              ++  + M+ +G  P  T + +     C  G+  +  EF+  A +      P+  +YN
Sbjct: 278 ENAISVFEEMLRKGYMPNSTTYNVVIRGLCHVGRMEKAMEFM--ARMKDDECEPNVQIYN 335

Query: 318 MMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRK---LWEASGLFNEM 374
           ++I  +C + E    + + ++M      P++ TYNIL   +   +K   L  A  L  EM
Sbjct: 336 VVIRYFCDAEEIEKGLNVFEKMGDADCLPNLDTYNILISAMFVRKKSDYLLTAGKLLIEM 395

Query: 375 VK 376
           V+
Sbjct: 396 VE 397



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/270 (20%), Positives = 109/270 (40%), Gaps = 21/270 (7%)

Query: 177 LSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEM----- 230
           ++   RD KT+  W  + R+   R+ P+  T+AI+ E +        A K F  M     
Sbjct: 110 IAGRLRDYKTL--WTLVDRMRTRRLGPNPKTFAIITERYVSAGKPDRAIKIFFSMHEHGC 167

Query: 231 ---------VIEVGWDPDNVPAYDSYLITLLKG---CDGIYETVNSLKRMMERGCNPGMT 278
                    +++V      V   D+ L  + +G      + E      +M +R C   + 
Sbjct: 168 VQDLNSFNTILDVLCKSKRVEMADNKLFKVFRGFFRAGQLKEAWEFFLQMKKRKCEIDVV 227

Query: 279 FFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDE 338
            +            +R A+ ++  M+G  G  P    YN  I + C  +    A+ + +E
Sbjct: 228 TYTTVVHGFGVAGEVRKAQRVFNEMIGE-GVLPSVATYNAFIQVLCKKDNVENAISVFEE 286

Query: 339 MVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDD 398
           M+  G  P+  TYN++   L    ++ +A      M  +E   N +     +R + D+++
Sbjct: 287 MLRKGYMPNSTTYNVVIRGLCHVGRMEKAMEFMARMKDDECEPNVQIYNVVIRYFCDAEE 346

Query: 399 PYVAIKFWKYMIENHCSDLSETGNLLVAGL 428
               +  ++ M +  C    +T N+L++ +
Sbjct: 347 IEKGLNVFEKMGDADCLPNLDTYNILISAM 376


>gi|383176220|gb|AFG71632.1| hypothetical protein 2_10152_01, partial [Pinus taeda]
          Length = 144

 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 55/128 (42%), Positives = 83/128 (64%)

Query: 334 KLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVY 393
           +LLDEMVYNG FPD +TYN +FE L+  RK+ EAS +F EM KNE    ++N   A+++Y
Sbjct: 16  RLLDEMVYNGIFPDFKTYNTIFEGLITARKVEEASIIFREMTKNEFCPLYDNYVMAIKMY 75

Query: 394 MDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTP 453
           +++DDP +A+  WK+MI+      S+   +LV   CD+  + EAVKY+     +G+Q+  
Sbjct: 76  LEADDPEMAVTMWKHMIQKAIFPKSDCAAILVDWFCDLGRVSEAVKYSMDAIARGVQLPV 135

Query: 454 FALSKLKQ 461
              +KLK+
Sbjct: 136 ETTTKLKK 143


>gi|255579531|ref|XP_002530608.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223529856|gb|EEF31788.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 596

 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 107/457 (23%), Positives = 192/457 (42%), Gaps = 12/457 (2%)

Query: 18  HNKRKRSTFASHLDVPNLPPTIKTLCEIIANTPS--PTVEDVLDKTLIRVSQETVEQVLK 75
           +N   R   +S +D       ++ +  I+ N  S  P +E  L ++ + +     E+VL 
Sbjct: 57  NNTSDRDNSSSKVD--EFAKDVEKVYRILRNFHSRVPKLELALQESGVTMRAGLTERVLN 114

Query: 76  FSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSL 135
                     +FF W++ Q   +HS   +  +V +  K   F A+W  ++ M+K+N + +
Sbjct: 115 RCGDAGNLGYRFFVWASKQPGYRHSYENYKAMVKIFSKMRQFGAVWALLEEMRKDNSVLI 174

Query: 136 AT--FASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
            +  F  +   +  A  V+ AI   D M +YGC+ D +    LL A+C++G    A    
Sbjct: 175 TSELFIVLIRRFASARLVEKAIEVLDEMPKYGCEPDEYVFGCLLDALCKNGSVKQAASLF 234

Query: 194 RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLK 253
             +  R  P    +  LL GW +E  +  AK    +M  E G++PD V   +  L++   
Sbjct: 235 EDMRVRFSPSLRHFTSLLYGWCREGKLIEAKHVLVQMR-EAGFEPDIVVFNN--LLSAYS 291

Query: 254 GCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDT 313
               + +  + LK M+ +GC P    + +  +   + + +  A  ++  M  R G   D 
Sbjct: 292 MAGKMTDAFDLLKEMVRKGCEPNANSYTIMIQAFCSQEKMDEAMRVFVEM-ERTGCEADV 350

Query: 314 HMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNE 373
             Y  +IS +C   +     ++LD M   G  P+  TY  +     K  +L E   L   
Sbjct: 351 VTYTALISGFCKWGKINRGYQILDAMKQKGHMPNQLTYLRILLAHEKKEELEECLELIES 410

Query: 374 MVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHM 433
           M     V +       +R+     +    ++ W  M  +  S   +T  +++ G      
Sbjct: 411 MRMVGCVPDLSIYNVVIRLACKLGEVKQGVQIWNEMEASDFSPELDTFVIMIHGFLGQGC 470

Query: 434 LPEAVKYAKGMAEKGIQVTP--FALSKLKQILIKARK 468
           L EA +Y K M  +G+  TP    L +L   L++  K
Sbjct: 471 LVEACEYFKEMIGRGLLTTPQYGILKELLNALLRGEK 507


>gi|125551971|gb|EAY97680.1| hypothetical protein OsI_19602 [Oryza sativa Indica Group]
          Length = 586

 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 107/412 (25%), Positives = 183/412 (44%), Gaps = 22/412 (5%)

Query: 53  TVEDVLDKTLIRVSQETVEQVL-KFSYSHPGPAVKFFRWSAYQLNDK----HSPYAWNLV 107
           ++E  L      +S+  V  VL +F ++H  P+ +FFRW+A          H+   +  +
Sbjct: 169 SLEAALTALSPPLSETLVLAVLDRFKHAHR-PSHRFFRWAAAAAAASGGFAHTTITYCKM 227

Query: 108 VDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCK 167
           V +LGK   F +M   I+ M KE  L +  F     S+  A  +K+A+  F++M  +G  
Sbjct: 228 VHILGKARQFQSMVALIQEMGKEGALCMDAFKIAIKSFAAAGEIKNAVGVFEMMRTHGFD 287

Query: 168 HDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTF 227
             V + N LL A+ ++G   +A Q    +  R  PD  +Y  L+  W   R++  A + +
Sbjct: 288 DGVESFNCLLVALAQEGLGREANQVFDRMRDRYAPDLRSYTALMLAWCNARNLVEAGRVW 347

Query: 228 GEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGM-TFFKLAFEE 286
            EM +E G  PD V  +++ +  LL+G     E V   + M  +G  P + T+  L  + 
Sbjct: 348 NEM-LENGLKPD-VVVHNTMIEGLLRG-QRRPEAVKMFELMKAKGPAPNVWTYTMLIRDH 404

Query: 287 CLTGQ---NLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNG 343
           C  G+    +R  E +       +G +PD   Y  ++  Y  +        LL+EM   G
Sbjct: 405 CKRGKMDMAMRCFEEMQD-----VGCQPDVATYTCLLVGYGNAKRMDRVTALLEEMTQKG 459

Query: 344 AFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPY-VA 402
             PD +TYN L + L       +A+ ++ +M+K             ++ Y      Y + 
Sbjct: 460 CPPDGRTYNALIKLLTNRNMPDDAARIYKKMIKKGLEPTIHTYNMMMKSYFLGGRNYMMG 519

Query: 403 IKFWKYMIENH-CSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTP 453
              W+ M     C D++    + + G        EA KY + M +KG++ TP
Sbjct: 520 CAVWEEMHRKGICPDVNSY-TVFINGHIRHGRPEEACKYIEEMIQKGMK-TP 569


>gi|302806665|ref|XP_002985064.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
 gi|300147274|gb|EFJ13939.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
          Length = 1636

 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 106/423 (25%), Positives = 182/423 (43%), Gaps = 55/423 (13%)

Query: 58  LDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLF 117
           LD+   ++S E V +VL+     PG A+ FF W+  +   +H  +  N ++++L K   +
Sbjct: 84  LDEYRGQLSPEIVGKVLQ-RLIDPGAALVFFEWAETRDGYQHEIFCCNCLLNVLVKAHQY 142

Query: 118 DAMWDAIKS-MKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSL 176
               D  +S ++ +      T++++ S ++ A ++  A   FD M + G K       S+
Sbjct: 143 SQAHDLFRSRIEGQWGGDTVTYSTLISGFIRAGKILPAYELFDEMNRKGLKAHAGVHKSI 202

Query: 177 LSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGW 236
           L  +C  G+  DA    R +     PD+ TY  ++ G  K   + +A +   EMV + G+
Sbjct: 203 LRGLCDAGQCSDAVLHFREMSKTCPPDSVTYNTMINGLSKSDRLDDAIRLLEEMV-DNGF 261

Query: 237 DPDNVPAYDSYLITLLK-----------------GC-----------------DGIYETV 262
            P NV +Y++ L    K                 GC                 D + E  
Sbjct: 262 AP-NVFSYNTVLHGFCKANRVENALWLLEQMVTRGCPPDVVSYTTVINGLCKLDQVDEAC 320

Query: 263 NSLKRMMERGCNPG-MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMIS 321
             + +M++RGC P  +T+  L    C  G +L GA  +   M  R G+RP+   YN ++ 
Sbjct: 321 RVMDKMIQRGCQPNVITYGTLVDGFCRVG-DLDGAVELVRKMTER-GYRPNAITYNNIMH 378

Query: 322 LYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVL 381
           ++C  N+   A ++L  M+  G  PD   Y+ +     K  KL EA  L  +M++     
Sbjct: 379 VFCRRNDMERAHQVLQMMIQTGCPPDAINYSTIISGFCKAGKLREAHDLLEQMIR----- 433

Query: 382 NHENCR---AAVRVYMDSDDPYVAI----KFWKYMIENHCSDLSETGNLLVAGLCDMHML 434
               CR   A +   +D+     AI    +  +  I   C+      ++L+  LC    L
Sbjct: 434 --RGCRPDVACLSTLIDALCKAAAIDSAQELLRMSIGMDCAPDVVAYSILIHALCKAKRL 491

Query: 435 PEA 437
           PEA
Sbjct: 492 PEA 494



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 86/378 (22%), Positives = 163/378 (43%), Gaps = 6/378 (1%)

Query: 102 YAWNLVVDLLGK-NCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDV 160
           +++N V+    K N + +A+W   + + +     + ++ +V +     D+V +A    D 
Sbjct: 266 FSYNTVLHGFCKANRVENALWLLEQMVTRGCPPDVVSYTTVINGLCKLDQVDEACRVMDK 325

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERD 219
           M Q GC+ +V    +L+   CR G    A + +R +  R  +P+  TY  ++  + +  D
Sbjct: 326 MIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHVFCRRND 385

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTF 279
           +  A +   +M+I+ G  PD +    S +I+       + E  + L++M+ RGC P +  
Sbjct: 386 MERAHQVL-QMMIQTGCPPDAINY--STIISGFCKAGKLREAHDLLEQMIRRGCRPDVAC 442

Query: 280 FKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEM 339
                +       +  A+ +    +G +   PD   Y+++I   C +     A   LD M
Sbjct: 443 LSTLIDALCKAAAIDSAQELLRMSIG-MDCAPDVVAYSILIHALCKAKRLPEAESWLDVM 501

Query: 340 VYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDP 399
           V N  +PD+ TYN + + L K R++ +A  LF+ M     + +       +  +   ++ 
Sbjct: 502 VKNRCYPDVVTYNSVVDGLCKSRRINDAFLLFDRMRAAGVMPDVVTYSIVIHSFCKDNNL 561

Query: 400 YVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKL 459
             A K  + M E  C     T + L+ GLC    + +A    + M   G        + L
Sbjct: 562 DSAFKMLERMKEAKCVPDVVTYSALINGLCKAGTVDKAFDVFQEMLGCGCAPNLVTYNTL 621

Query: 460 KQILIKARKEAVYEELLK 477
              L K  K     E+L+
Sbjct: 622 IDGLCKINKVEQAAEMLE 639



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 95/435 (21%), Positives = 178/435 (40%), Gaps = 26/435 (5%)

Query: 55   EDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKN 114
            E  L++   +++   V +VL+    +   A+ FF W+  Q    H  Y  N         
Sbjct: 799  ETALERFTGKLTTTVVGKVLQ-GVRNGDAALGFFDWATSQEGYNHDTYTCN--------- 848

Query: 115  CLFDAMW------DAIKSMKKENVLS--LATFASVFSSYVVADRVKDAITTFDVMEQYGC 166
            CL  A+       DA++  + +   S  + TF  +      A  +  A      M ++G 
Sbjct: 849  CLLQALLRLKRPKDALQVYRNKLCCSPNMFTFTILIHGLCRAGDIGTAYELLKEMPRHGV 908

Query: 167  KHDVFALNSLLSAICRDGKTIDAWQFLRVVD--GRIKPDNDTYAILLEGWEKERDVANAK 224
              +V   N ++  +C   K   A +  + ++  G   PD  TY+ +++   K   V +A 
Sbjct: 909  PQNVILHNVVIKGLCSARKLDSALELFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDAC 968

Query: 225  KTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAF 284
            +   +MV + G  P NV  Y S L  L K    + E    L+RM   GC+P +  +    
Sbjct: 969  RLVEDMVSK-GCSP-NVVTYSSLLHGLCKA-GKLDEATALLQRMTRSGCSPNIVTYNTII 1025

Query: 285  E-ECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNG 343
            +  C  G+       +   + G  G +P+   Y +++  +C   +   A+ L++ MV  G
Sbjct: 1026 DGHCKLGRIDEAYHLLEEMVDG--GCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKG 1083

Query: 344  AFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAI 403
              P++ TYN L +   K  ++  A  L + M++   V N  +    +     +   +  +
Sbjct: 1084 YVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGV 1143

Query: 404  KFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQIL 463
               + M+ N+C     T N ++  +C  + +  A +    + E G        + L   L
Sbjct: 1144 LLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGL 1203

Query: 464  IKARKEAVYEELLKK 478
             K+R+    E LL++
Sbjct: 1204 CKSRRFDQAEYLLRE 1218



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 82/346 (23%), Positives = 148/346 (42%), Gaps = 5/346 (1%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RV 195
           T+ ++   +   + ++ A     +M Q GC  D    ++++S  C+ GK  +A   L ++
Sbjct: 372 TYNNIMHVFCRRNDMERAHQVLQMMIQTGCPPDAINYSTIISGFCKAGKLREAHDLLEQM 431

Query: 196 VDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
           +    +PD    + L++   K   + +A++    M I +   PD V AY S LI  L   
Sbjct: 432 IRRGCRPDVACLSTLIDALCKAAAIDSAQELL-RMSIGMDCAPD-VVAY-SILIHALCKA 488

Query: 256 DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHM 315
             + E  + L  M++  C P +  +    +     + +  A  ++  M    G  PD   
Sbjct: 489 KRLPEAESWLDVMVKNRCYPDVVTYNSVVDGLCKSRRINDAFLLFDRMRA-AGVMPDVVT 547

Query: 316 YNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
           Y+++I  +C  N   +A K+L+ M      PD+ TY+ L   L K   + +A  +F EM+
Sbjct: 548 YSIVIHSFCKDNNLDSAFKMLERMKEAKCVPDVVTYSALINGLCKAGTVDKAFDVFQEML 607

Query: 376 KNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLP 435
                 N       +      +    A +  + M +  C+  S T   L+ GLC+   L 
Sbjct: 608 GCGCAPNLVTYNTLIDGLCKINKVEQAAEMLEIMRKQSCTPDSITYTCLINGLCNASRLE 667

Query: 436 EAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKCKA 481
           EA +  + M +KG          L + L K     + E+LLK+ +A
Sbjct: 668 EAWRVLREMKDKGCLPDRMTYGTLLRALQKTNNLELVEQLLKEMEA 713



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 73/362 (20%), Positives = 158/362 (43%), Gaps = 6/362 (1%)

Query: 102  YAWNLVVDLLGKNCLFDAMWDAIKSM-KKENVLSLATFASVFSSYVVADRVKDAITTFDV 160
            + +N ++D+  K    +     + SM +K  V ++ ++ +V +    A +V + +   + 
Sbjct: 1089 FTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQ 1148

Query: 161  MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV-DGRIKPDNDTYAILLEGWEKERD 219
            M    C  D+   N+++ A+C+  +   A++   ++ +    P+  TY  L+ G  K R 
Sbjct: 1149 MLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRR 1208

Query: 220  VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTF 279
               A+    EM  + G  PD +  Y++ +  L K    +        +M+  G  P    
Sbjct: 1209 FDQAEYLLREMTRKQGCSPD-IITYNTVIDGLCKS-KRVDRAYKLFLQMLSDGLAPDDVT 1266

Query: 280  FKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEM 339
            + +        + +  A  +   M+ + GF P    Y  +I  +C +     A+++L  +
Sbjct: 1267 YSIVISSLCKWRFMDEANNVLELML-KNGFDPGAITYGTLIDGFCKTGNLDKALEILQLL 1325

Query: 340  VYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDP 399
            +  G++PD+ T++I  ++L K  +L +A  L   M++   V +       ++ + D+   
Sbjct: 1326 LSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGFCDASLT 1385

Query: 400  YVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAV-KYAKGMAEKGIQVTPFALSK 458
              A+  ++ M +  C   + T   LV  L D     + + + +K M + G ++     SK
Sbjct: 1386 EDAVDLFEVMRQCGCEPDNATYTTLVGHLVDKKSYKDLLAEVSKSMVDTGFKLNHELSSK 1445

Query: 459  LK 460
            L+
Sbjct: 1446 LE 1447



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 71/280 (25%), Positives = 117/280 (41%), Gaps = 39/280 (13%)

Query: 134  SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
            ++ T+ ++   +    R+ +A    + M   GC+ +V     LL A C+ GK  DA   +
Sbjct: 1017 NIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLV 1076

Query: 194  RV-VDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
             V V+    P+  TY  LL+ + K+ +V  A +    M I+ G  P NV +Y++ +  L 
Sbjct: 1077 EVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSM-IQKGCVP-NVVSYNTVIAGLC 1134

Query: 253  KGCDGIYETVNSLKRMM-----------------------------------ERGCNPGM 277
            K    ++E V  L++M+                                   E GC P +
Sbjct: 1135 KA-TKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNL 1193

Query: 278  TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLD 337
              +          +    AE++   M  + G  PD   YN +I   C S     A KL  
Sbjct: 1194 VTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFL 1253

Query: 338  EMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKN 377
            +M+ +G  PD  TY+I+   L K R + EA+ +   M+KN
Sbjct: 1254 QMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKN 1293



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 69/275 (25%), Positives = 123/275 (44%), Gaps = 8/275 (2%)

Query: 107 VVDLLGKNCLFDAMWDAIK-SMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYG 165
           ++D L K    D+  + ++ S+  +    +  ++ +  +   A R+ +A +  DVM +  
Sbjct: 446 LIDALCKAAAIDSAQELLRMSIGMDCAPDVVAYSILIHALCKAKRLPEAESWLDVMVKNR 505

Query: 166 CKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDVANAK 224
           C  DV   NS++  +C+  +  DA+  F R+    + PD  TY+I++  + K+ ++ +A 
Sbjct: 506 CYPDVVTYNSVVDGLCKSRRINDAFLLFDRMRAAGVMPDVVTYSIVIHSFCKDNNLDSAF 565

Query: 225 KTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGM-TFFKLA 283
           K   E + E    PD V    S LI  L     + +  +  + M+  GC P + T+  L 
Sbjct: 566 KML-ERMKEAKCVPDVVTY--SALINGLCKAGTVDKAFDVFQEMLGCGCAPNLVTYNTLI 622

Query: 284 FEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNG 343
              C   +  + AE +   ++ +    PD+  Y  +I+  C ++    A ++L EM   G
Sbjct: 623 DGLCKINKVEQAAEML--EIMRKQSCTPDSITYTCLINGLCNASRLEEAWRVLREMKDKG 680

Query: 344 AFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNE 378
             PD  TY  L   L K   L     L  EM   E
Sbjct: 681 CLPDRMTYGTLLRALQKTNNLELVEQLLKEMEATE 715


>gi|224068054|ref|XP_002302657.1| predicted protein [Populus trichocarpa]
 gi|222844383|gb|EEE81930.1| predicted protein [Populus trichocarpa]
          Length = 602

 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 96/400 (24%), Positives = 173/400 (43%), Gaps = 6/400 (1%)

Query: 52  PTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLL 111
           P +E  L ++ + +     E+VL         A KFF W++ Q   +H    +  ++ +L
Sbjct: 66  PKLELALQESGVVLRNGLTERVLNRCGDAGILAYKFFVWASKQPCYRHCYENYKAMIKVL 125

Query: 112 GKNCLFDAMWDAIKSMKKEN--VLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHD 169
            K   F A+W  ++ M+++N  +++   F  V   +  +  V  AI   D M +YGC+ D
Sbjct: 126 SKMKQFGAVWALLEEMRRDNSVLITSEVFVVVMRRFASSRMVNKAIEVLDEMPKYGCEPD 185

Query: 170 VFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGE 229
            +    LL A+C++G   +A      +  R  P    +  LL GW KE  +  AK    +
Sbjct: 186 EYVFGCLLDALCKNGSVKEAASLFEDMRVRFSPSLKHFTCLLYGWCKEGKLLEAKHVLVQ 245

Query: 230 MVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLT 289
           M  E G++PD +  Y++ L++       + +  + LK +  +GC+P  T + +  +    
Sbjct: 246 MR-EAGFEPD-IVVYNN-LLSGYATAGKMGDAFDLLKEIRRKGCDPNATSYTILIQALCG 302

Query: 290 GQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQ 349
            + +  A  ++  M  R G   D   Y  ++S +C         ++L  M+  G  P+  
Sbjct: 303 QEKMDEAMRVFVEM-ERSGCDADVVTYTALVSGFCKWRMIDKGYQILQSMIQKGHMPNQL 361

Query: 350 TYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYM 409
           TY  L     K  +L E   L  EM K   + +       +R+     +    +  W  M
Sbjct: 362 TYLHLMLAHEKKEELEECKELMGEMQKIGCIPDLSIYNVVIRLACKLGEVNAGVDAWNEM 421

Query: 410 IENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
             +  S   +T  +++ G      L EA +Y K M E+G+
Sbjct: 422 EVSGLSPGLDTFVIMINGFLGHGYLVEACQYFKEMVERGL 461


>gi|9857539|gb|AAG00894.1|AC064879_12 Hypothetical protein [Arabidopsis thaliana]
          Length = 490

 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 105/432 (24%), Positives = 201/432 (46%), Gaps = 15/432 (3%)

Query: 54  VEDVLDKTLIRVSQETVEQVLK---FSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDL 110
           +++ L  + I +S++ +++VLK   FS+ +P   ++F+R+++      HS ++ + ++ +
Sbjct: 57  LKESLSSSGIHLSKDLIDRVLKRVRFSHGNPIQTLEFYRYASAIRGFYHSSFSLDTMLYI 116

Query: 111 LGKNCLFDAMWDAIKSMKKEN--VLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKH 168
           LG+N  FD +W+ +   K+++  ++S  T   V         V+  + +F   ++     
Sbjct: 117 LGRNRKFDQIWELLIETKRKDRSLISPRTMQVVLGRVAKLCSVRQTVESFWKFKRLVPDF 176

Query: 169 -DVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTF 227
            D    N+LL  +C++    DA      +  + +PD  T+ ILL GW+   +     +  
Sbjct: 177 FDTACFNALLRTLCQEKSMTDARNVYHSLKHQFQPDLQTFNILLSGWKSSEEAEAFFEEM 236

Query: 228 GEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPG-MTFFKLAFEE 286
                  G  PD V  Y+S +    K  + I +    + +M E    P  +T+  +    
Sbjct: 237 KGK----GLKPD-VVTYNSLIDVYCKDRE-IEKAYKLIDKMREEEETPDVITYTTVIGGL 290

Query: 287 CLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFP 346
            L GQ  +  E +    +   G  PD   YN  I  +C +   G A KL+DEMV  G  P
Sbjct: 291 GLIGQPDKAREVL--KEMKEYGCYPDVAAYNAAIRNFCIARRLGDADKLVDEMVKKGLSP 348

Query: 347 DIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFW 406
           +  TYN+ F  L     L  +  L+  M+ NE + N ++C   ++++   +   +A++ W
Sbjct: 349 NATTYNLFFRVLSLANDLGRSWELYVRMLGNECLPNTQSCMFLIKMFKRHEKVDMAMRLW 408

Query: 407 KYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKA 466
           + M+       S   ++L+  LCD+  + EA K    M EKG + +  +  ++K ++  A
Sbjct: 409 EDMVVKGFGSYSLVSDVLLDLLCDLAKVEEAEKCLLEMVEKGHRPSNVSFKRIKLLMELA 468

Query: 467 RKEAVYEELLKK 478
            K      L++K
Sbjct: 469 NKHDEVNNLIQK 480


>gi|15217756|ref|NP_171744.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806504|sp|Q9FZ19.2|PPR5_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g02420
 gi|332189307|gb|AEE27428.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 491

 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 105/432 (24%), Positives = 201/432 (46%), Gaps = 15/432 (3%)

Query: 54  VEDVLDKTLIRVSQETVEQVLK---FSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDL 110
           +++ L  + I +S++ +++VLK   FS+ +P   ++F+R+++      HS ++ + ++ +
Sbjct: 58  LKESLSSSGIHLSKDLIDRVLKRVRFSHGNPIQTLEFYRYASAIRGFYHSSFSLDTMLYI 117

Query: 111 LGKNCLFDAMWDAIKSMKKEN--VLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKH 168
           LG+N  FD +W+ +   K+++  ++S  T   V         V+  + +F   ++     
Sbjct: 118 LGRNRKFDQIWELLIETKRKDRSLISPRTMQVVLGRVAKLCSVRQTVESFWKFKRLVPDF 177

Query: 169 -DVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTF 227
            D    N+LL  +C++    DA      +  + +PD  T+ ILL GW+   +     +  
Sbjct: 178 FDTACFNALLRTLCQEKSMTDARNVYHSLKHQFQPDLQTFNILLSGWKSSEEAEAFFEEM 237

Query: 228 GEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPG-MTFFKLAFEE 286
                  G  PD V  Y+S +    K  + I +    + +M E    P  +T+  +    
Sbjct: 238 KGK----GLKPD-VVTYNSLIDVYCKDRE-IEKAYKLIDKMREEEETPDVITYTTVIGGL 291

Query: 287 CLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFP 346
            L GQ  +  E +    +   G  PD   YN  I  +C +   G A KL+DEMV  G  P
Sbjct: 292 GLIGQPDKAREVL--KEMKEYGCYPDVAAYNAAIRNFCIARRLGDADKLVDEMVKKGLSP 349

Query: 347 DIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFW 406
           +  TYN+ F  L     L  +  L+  M+ NE + N ++C   ++++   +   +A++ W
Sbjct: 350 NATTYNLFFRVLSLANDLGRSWELYVRMLGNECLPNTQSCMFLIKMFKRHEKVDMAMRLW 409

Query: 407 KYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKA 466
           + M+       S   ++L+  LCD+  + EA K    M EKG + +  +  ++K ++  A
Sbjct: 410 EDMVVKGFGSYSLVSDVLLDLLCDLAKVEEAEKCLLEMVEKGHRPSNVSFKRIKLLMELA 469

Query: 467 RKEAVYEELLKK 478
            K      L++K
Sbjct: 470 NKHDEVNNLIQK 481


>gi|11994279|dbj|BAB01462.1| unnamed protein product [Arabidopsis thaliana]
          Length = 648

 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 100/363 (27%), Positives = 164/363 (45%), Gaps = 42/363 (11%)

Query: 122 DAIKSMKKENV-LSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAI 180
           D  + M++ N+  S+  ++ V  S        DA++ F+ ME  G K DV   +SL+  +
Sbjct: 260 DLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGL 319

Query: 181 CRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPD 239
           C DGK  D  + LR + GR I PD  T++ L++ + KE  +  AK+ + EM+   G  PD
Sbjct: 320 CNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITR-GIAPD 378

Query: 240 NVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFI 299
            +  Y+S +    K  + ++E       M+ +GC P +  + +        + +     +
Sbjct: 379 TI-TYNSLIDGFCKE-NCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRL 436

Query: 300 WGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLV 359
           +  +  + G  P+T  YN ++  +C S +  AA +L  EMV  G  P + TY IL + L 
Sbjct: 437 FREISSK-GLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLC 495

Query: 360 KGRKLWEASGLFNEMVKNE--------NVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIE 411
              +L +A  +F +M K+         N++ H  C A+       DD       W     
Sbjct: 496 DNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNAS-----KVDDA------WSLF-- 542

Query: 412 NHCSDLSETG--------NLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQIL 463
             CS LS+ G        N+++ GLC    L EA    + M E G     F  +    IL
Sbjct: 543 --CS-LSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYN----IL 595

Query: 464 IKA 466
           I+A
Sbjct: 596 IRA 598



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 84/330 (25%), Positives = 146/330 (44%), Gaps = 9/330 (2%)

Query: 119 AMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLS 178
           A+ D +  MK+     L T +++ +   +  RV +A+   D M +YG + D      +L+
Sbjct: 190 ALVDRMVEMKQRP--DLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLN 247

Query: 179 AICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWD 237
            +C+ G +  A    R ++ R IK     Y+I+++   K+    +A   F EM  E+   
Sbjct: 248 RLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEM--EMKGI 305

Query: 238 PDNVPAYDSYLITLLKGCDGIYE-TVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGA 296
             +V  Y S +  L    DG ++     L+ M+ R   P +  F    +  +    L  A
Sbjct: 306 KADVVTYSSLIGGLCN--DGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEA 363

Query: 297 EFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFE 356
           + ++  M+ R G  PDT  YN +I  +C  N    A ++ D MV  G  PDI TY+IL  
Sbjct: 364 KELYNEMITR-GIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILIN 422

Query: 357 FLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSD 416
              K +++ +   LF E+     + N       V  +  S     A + ++ M+      
Sbjct: 423 SYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPP 482

Query: 417 LSETGNLLVAGLCDMHMLPEAVKYAKGMAE 446
              T  +L+ GLCD   L +A++  + M +
Sbjct: 483 SVVTYGILLDGLCDNGELNKALEIFEKMQK 512



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/241 (24%), Positives = 106/241 (43%), Gaps = 9/241 (3%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           T+ S+   +   + + +A   FD+M   GC+ D+   + L+++ C+  +  D  +  R +
Sbjct: 381 TYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREI 440

Query: 197 DGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
             + + P+  TY  L+ G+ +   +  AK+ F EMV   G  P  V    +Y I L   C
Sbjct: 441 SSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSR-GVPPSVV----TYGILLDGLC 495

Query: 256 DG--IYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDT 313
           D   + + +   ++M +     G+  + +          +  A  ++ ++  + G +PD 
Sbjct: 496 DNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDK-GVKPDV 554

Query: 314 HMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNE 373
             YN+MI   C       A  L  +M  +G  PD  TYNIL    + G  L  +  L  E
Sbjct: 555 VTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELIEE 614

Query: 374 M 374
           M
Sbjct: 615 M 615



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 76/310 (24%), Positives = 131/310 (42%), Gaps = 7/310 (2%)

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERD 219
           ME  G +HD++ +  +++  CR  K + A+  L R      +PD  T++ L+ G+  E  
Sbjct: 125 MELNGIEHDMYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGR 184

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPG-MT 278
           V+ A      MV E+   PD V    S LI  L     + E +  + RM+E G  P  +T
Sbjct: 185 VSEAVALVDRMV-EMKQRPDLVTV--STLINGLCLKGRVSEALVLIDRMVEYGFQPDEVT 241

Query: 279 FFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDE 338
           +  +    C +G +    + ++  M  R   +     Y+++I   C       A+ L +E
Sbjct: 242 YGPVLNRLCKSGNSALALD-LFRKMEER-NIKASVVQYSIVIDSLCKDGSFDDALSLFNE 299

Query: 339 MVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDD 398
           M   G   D+ TY+ L   L    K  + + +  EM+    + +     A + V++    
Sbjct: 300 MEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGK 359

Query: 399 PYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSK 458
              A + +  MI    +  + T N L+ G C  + L EA +    M  KG +      S 
Sbjct: 360 LLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSI 419

Query: 459 LKQILIKARK 468
           L     KA++
Sbjct: 420 LINSYCKAKR 429



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 60/266 (22%), Positives = 113/266 (42%), Gaps = 14/266 (5%)

Query: 103 AWNLVVDLLGK-NCLFDA--MWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFD 159
            +N ++D   K NCL +A  M+D + S   E    + T++ + +SY  A RV D +  F 
Sbjct: 381 TYNSLIDGFCKENCLHEANQMFDLMVSKGCEP--DIVTYSILINSYCKAKRVDDGMRLFR 438

Query: 160 VMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKER 218
            +   G   +    N+L+   C+ GK   A + F  +V   + P   TY ILL+G     
Sbjct: 439 EISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNG 498

Query: 219 DVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDG--IYETVNSLKRMMERGCNPG 276
           ++  A + F +M                Y I +   C+   + +  +    + ++G  P 
Sbjct: 499 ELNKALEIFEKM-----QKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPD 553

Query: 277 MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLL 336
           +  + +         +L  A+ ++  M    G  PD   YN++I  +   +   ++++L+
Sbjct: 554 VVTYNVMIGGLCKKGSLSEADMLFRKM-KEDGCTPDDFTYNILIRAHLGGSGLISSVELI 612

Query: 337 DEMVYNGAFPDIQTYNILFEFLVKGR 362
           +EM   G   D  T  ++ + L   R
Sbjct: 613 EEMKVCGFSADSSTIKMVIDMLSDRR 638


>gi|356541430|ref|XP_003539180.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
           mitochondrial-like [Glycine max]
          Length = 492

 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 100/446 (22%), Positives = 196/446 (43%), Gaps = 16/446 (3%)

Query: 41  TLCEIIANTPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLND-KH 99
           T+ +++  +   T+ + L K  I  + E V + LK  ++H   A+ FF+     L    H
Sbjct: 40  TIAKLVLESDPRTLSEALTKPRIHWTPELVNKTLKRLWNHGPKALLFFKHLDRHLPSYTH 99

Query: 100 SPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASVFSSYVVADRVKDAITTF 158
           SP +++  VD+  +   F++ W  +  M+   +  S  T A +   Y    +   A+ TF
Sbjct: 100 SPSSFDHAVDIAARMRDFNSAWALVGRMRSLRLGPSPKTLAILAERYASIGKPHRAVRTF 159

Query: 159 DVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKER 218
             M ++G   D+ + N+LL  +C+  +   A   LR +  R +PD  +Y IL  G+  ++
Sbjct: 160 LSMHEHGLHQDLHSFNTLLDILCKSNRVETAHDLLRTLKSRFRPDTVSYNILANGYCLKK 219

Query: 219 DVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG---CDGIYETVNSLKRMMERGCNP 275
               A +   EMV + G +P  V  Y+    T+LKG    + I E       M +R C  
Sbjct: 220 RTPMALRVLKEMV-QRGIEPTMV-TYN----TMLKGYFRSNQIKEAWEFYLEMKKRKCEI 273

Query: 276 GMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKL 335
            +  +            ++ A+ ++  MV + G  P+   YN +I ++C  +    A+ +
Sbjct: 274 DVVSYTTVIHGFGEAGEVKKAKRVFDEMV-KEGVAPNVATYNALIQVFCKKDSVQNAVAV 332

Query: 336 LDEMVYNGA-FPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYM 394
            +EMV  G   P++ T+N++   L     +  A G    M ++    + +     +R + 
Sbjct: 333 FEEMVREGVCSPNVVTFNVVIRGLCHVGDMERALGFMERMGEHGLRASVQTYNVVIRYFC 392

Query: 395 DSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLC---DMHMLPEAVKYAKGMAEKGIQV 451
           D+ +    ++ +  M +  C    +T N+L++ +        L  A K    M E+G   
Sbjct: 393 DAGEIEKGLEVFGKMGDGLCLPNLDTYNVLISAMFVRKKSEDLVVAGKLLMEMVERGFLP 452

Query: 452 TPFALSKLKQILIKARKEAVYEELLK 477
             F  +++   L+    +   +++L+
Sbjct: 453 RKFTFNRVLNGLVITGNQDFAKDILR 478


>gi|302806549|ref|XP_002985024.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
 gi|300147234|gb|EFJ13899.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
          Length = 570

 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 100/374 (26%), Positives = 163/374 (43%), Gaps = 22/374 (5%)

Query: 105 NLVVDLLGKNCLFDAMWDAIKSMKKEN-VLSLATFASVFSSYVVADRVKDAITTFDVMEQ 163
           NLV+  L K+    A  D  ++       + + T+ ++        +++DA+   + +  
Sbjct: 134 NLVLHGLCKSGKVLAAMDHFETTTTNGCTIDIHTYTAIVDWLAKNKKIQDAVALMEKITA 193

Query: 164 YGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYAILLEGWEKERDVAN 222
            GC   +   N+LL+ +C+ G+  +A   LR +VD    PD  TY  L++G  KE+    
Sbjct: 194 NGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFE 253

Query: 223 AKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKL 282
           A K F EM +  G   D V  Y + +  LL+    I +  +  K M  +GC P +     
Sbjct: 254 AYKLFKEMALR-GLVLDTV-CYTALIRGLLQA-GKIPQASSVYKTMTSQGCVPDVVTLST 310

Query: 283 AFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYN 342
             +       +  A  I+ +M  R G  P+  +Y+ +I   C + +   A+++L +M   
Sbjct: 311 MIDGLCKAGRIGAAVRIFKSMEAR-GLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKA 369

Query: 343 GAFPDIQTYNILFEFLVKGRKLWEASGLFNEM--------VKNENVLNHENCRAAVRVYM 394
              PD  TYNIL + L K   +  A   F+EM        V   N+L    C+A      
Sbjct: 370 FCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILVSGFCKAG----- 424

Query: 395 DSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPF 454
           ++D    A   +  M  +HCS    T   L++GLC    L +A  Y + M E+G     F
Sbjct: 425 NTD---AACGVFDDMSSSHCSPNVVTYGTLISGLCKRRQLTKASLYFQHMKERGCPPDSF 481

Query: 455 ALSKLKQILIKARK 468
             S L   L K+ K
Sbjct: 482 VYSSLVDGLCKSGK 495



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 77/319 (24%), Positives = 133/319 (41%), Gaps = 4/319 (1%)

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYAILLEGWEKERDVA 221
           ++G +H V   N+LL    R  +  +A   L+  +     PD +T+ +L+ G+   R+  
Sbjct: 52  RFGFQHSVHTGNALLDVFARTKRHREAGNLLKNELATTFLPDVETWNVLITGYCLAREPE 111

Query: 222 NAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFK 281
            A     EM  + G  P ++  ++  L  L K    +   ++  +     GC   +  + 
Sbjct: 112 EAFAVIREMEEDYGVAP-SLKTHNLVLHGLCKS-GKVLAAMDHFETTTTNGCTIDIHTYT 169

Query: 282 LAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVY 341
              +     + ++ A  +   +    G  P    YN +++  C       A+ LL ++V 
Sbjct: 170 AIVDWLAKNKKIQDAVALMEKITAN-GCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVD 228

Query: 342 NGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYV 401
           NG  PD+ TY  L + L K ++ +EA  LF EM     VL+     A +R  + +     
Sbjct: 229 NGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLVLDTVCYTALIRGLLQAGKIPQ 288

Query: 402 AIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQ 461
           A   +K M    C     T + ++ GLC    +  AV+  K M  +G+       S L  
Sbjct: 289 ASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIH 348

Query: 462 ILIKARKEAVYEELLKKCK 480
            L KARK     E+L + K
Sbjct: 349 GLCKARKMDCALEMLAQMK 367



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 81/374 (21%), Positives = 147/374 (39%), Gaps = 57/374 (15%)

Query: 104 WNLVVDLLGKNCLFDAMWDAIKSMKKEN-VLSLATFASVFSSYVVADRVKDAITTFDVME 162
           +  ++D LGK       +   K M     VL    + ++    + A ++  A + +  M 
Sbjct: 238 YTSLIDGLGKEKRSFEAYKLFKEMALRGLVLDTVCYTALIRGLLQAGKIPQASSVYKTMT 297

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVA 221
             GC  DV  L++++  +C+ G+   A +  + ++ R + P+   Y+ L+ G  K R + 
Sbjct: 298 SQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMD 357

Query: 222 NAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFK 281
            A +   +M  +    PD +  Y+  +  L K  D +         M+E GC        
Sbjct: 358 CALEMLAQMK-KAFCTPDTI-TYNILIDGLCKSGD-VEAARAFFDEMLEAGC-------- 406

Query: 282 LAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVY 341
                                       +PD + YN+++S +C +  T AA  + D+M  
Sbjct: 407 ----------------------------KPDVYTYNILVSGFCKAGNTDAACGVFDDMSS 438

Query: 342 NGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYV 401
           +   P++ TY  L   L K R+L +AS  F  M           C     VY    D   
Sbjct: 439 SHCSPNVVTYGTLISGLCKRRQLTKASLYFQHM-------KERGCPPDSFVYSSLVDGLC 491

Query: 402 -------AIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPF 454
                      +  M  +  ++ S+T   L+  LC  + + EAV     + ++G+   P+
Sbjct: 492 KSGKLEGGCMLFDEMERSGVAN-SQTRTRLIFHLCKANRVDEAVSLFNAIRKEGMP-HPY 549

Query: 455 ALSKLKQILIKARK 468
           A + +   LIK+ K
Sbjct: 550 AYNSIISTLIKSAK 563


>gi|15228763|ref|NP_188886.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75223290|sp|Q6NQ83.1|PP247_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g22470, mitochondrial; Flags: Precursor
 gi|34365775|gb|AAQ65199.1| At3g22470 [Arabidopsis thaliana]
 gi|51968798|dbj|BAD43091.1| hypothetical protein [Arabidopsis thaliana]
 gi|332643122|gb|AEE76643.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 619

 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 100/363 (27%), Positives = 164/363 (45%), Gaps = 42/363 (11%)

Query: 122 DAIKSMKKENV-LSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAI 180
           D  + M++ N+  S+  ++ V  S        DA++ F+ ME  G K DV   +SL+  +
Sbjct: 231 DLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGL 290

Query: 181 CRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPD 239
           C DGK  D  + LR + GR I PD  T++ L++ + KE  +  AK+ + EM+   G  PD
Sbjct: 291 CNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITR-GIAPD 349

Query: 240 NVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFI 299
            +  Y+S +    K  + ++E       M+ +GC P +  + +        + +     +
Sbjct: 350 TI-TYNSLIDGFCKE-NCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRL 407

Query: 300 WGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLV 359
           +  +  + G  P+T  YN ++  +C S +  AA +L  EMV  G  P + TY IL + L 
Sbjct: 408 FREISSK-GLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLC 466

Query: 360 KGRKLWEASGLFNEMVKNE--------NVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIE 411
              +L +A  +F +M K+         N++ H  C A+       DD       W     
Sbjct: 467 DNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNAS-----KVDDA------WSL--- 512

Query: 412 NHCSDLSETG--------NLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQIL 463
             CS LS+ G        N+++ GLC    L EA    + M E G     F  +    IL
Sbjct: 513 -FCS-LSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYN----IL 566

Query: 464 IKA 466
           I+A
Sbjct: 567 IRA 569



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 84/330 (25%), Positives = 146/330 (44%), Gaps = 9/330 (2%)

Query: 119 AMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLS 178
           A+ D +  MK+     L T +++ +   +  RV +A+   D M +YG + D      +L+
Sbjct: 161 ALVDRMVEMKQRP--DLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLN 218

Query: 179 AICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWD 237
            +C+ G +  A    R ++ R IK     Y+I+++   K+    +A   F EM  E+   
Sbjct: 219 RLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEM--EMKGI 276

Query: 238 PDNVPAYDSYLITLLKGCDGIYE-TVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGA 296
             +V  Y S +  L    DG ++     L+ M+ R   P +  F    +  +    L  A
Sbjct: 277 KADVVTYSSLIGGLCN--DGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEA 334

Query: 297 EFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFE 356
           + ++  M+ R G  PDT  YN +I  +C  N    A ++ D MV  G  PDI TY+IL  
Sbjct: 335 KELYNEMITR-GIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILIN 393

Query: 357 FLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSD 416
              K +++ +   LF E+     + N       V  +  S     A + ++ M+      
Sbjct: 394 SYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPP 453

Query: 417 LSETGNLLVAGLCDMHMLPEAVKYAKGMAE 446
              T  +L+ GLCD   L +A++  + M +
Sbjct: 454 SVVTYGILLDGLCDNGELNKALEIFEKMQK 483



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/241 (24%), Positives = 106/241 (43%), Gaps = 9/241 (3%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           T+ S+   +   + + +A   FD+M   GC+ D+   + L+++ C+  +  D  +  R +
Sbjct: 352 TYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREI 411

Query: 197 DGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
             + + P+  TY  L+ G+ +   +  AK+ F EMV   G  P  V    +Y I L   C
Sbjct: 412 SSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSR-GVPPSVV----TYGILLDGLC 466

Query: 256 DG--IYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDT 313
           D   + + +   ++M +     G+  + +          +  A  ++ ++  + G +PD 
Sbjct: 467 DNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDK-GVKPDV 525

Query: 314 HMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNE 373
             YN+MI   C       A  L  +M  +G  PD  TYNIL    + G  L  +  L  E
Sbjct: 526 VTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELIEE 585

Query: 374 M 374
           M
Sbjct: 586 M 586



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 76/310 (24%), Positives = 131/310 (42%), Gaps = 7/310 (2%)

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERD 219
           ME  G +HD++ +  +++  CR  K + A+  L R      +PD  T++ L+ G+  E  
Sbjct: 96  MELNGIEHDMYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGR 155

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPG-MT 278
           V+ A      MV E+   PD V    S LI  L     + E +  + RM+E G  P  +T
Sbjct: 156 VSEAVALVDRMV-EMKQRPDLVTV--STLINGLCLKGRVSEALVLIDRMVEYGFQPDEVT 212

Query: 279 FFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDE 338
           +  +    C +G +    + ++  M  R   +     Y+++I   C       A+ L +E
Sbjct: 213 YGPVLNRLCKSGNSALALD-LFRKMEER-NIKASVVQYSIVIDSLCKDGSFDDALSLFNE 270

Query: 339 MVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDD 398
           M   G   D+ TY+ L   L    K  + + +  EM+    + +     A + V++    
Sbjct: 271 MEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGK 330

Query: 399 PYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSK 458
              A + +  MI    +  + T N L+ G C  + L EA +    M  KG +      S 
Sbjct: 331 LLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSI 390

Query: 459 LKQILIKARK 468
           L     KA++
Sbjct: 391 LINSYCKAKR 400



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 61/271 (22%), Positives = 115/271 (42%), Gaps = 24/271 (8%)

Query: 103 AWNLVVDLLGK-NCLFDA--MWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFD 159
            +N ++D   K NCL +A  M+D + S   E    + T++ + +SY  A RV D +  F 
Sbjct: 352 TYNSLIDGFCKENCLHEANQMFDLMVSKGCEP--DIVTYSILINSYCKAKRVDDGMRLFR 409

Query: 160 VMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKER 218
            +   G   +    N+L+   C+ GK   A + F  +V   + P   TY ILL+G     
Sbjct: 410 EISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNG 469

Query: 219 DVANAKKTF-----GEMVIEVGWDPDNVPAYDSYLITLLKGCDG--IYETVNSLKRMMER 271
           ++  A + F       M + +G           Y I +   C+   + +  +    + ++
Sbjct: 470 ELNKALEIFEKMQKSRMTLGIGI----------YNIIIHGMCNASKVDDAWSLFCSLSDK 519

Query: 272 GCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGA 331
           G  P +  + +         +L  A+ ++  M    G  PD   YN++I  +   +   +
Sbjct: 520 GVKPDVVTYNVMIGGLCKKGSLSEADMLFRKM-KEDGCTPDDFTYNILIRAHLGGSGLIS 578

Query: 332 AMKLLDEMVYNGAFPDIQTYNILFEFLVKGR 362
           +++L++EM   G   D  T  ++ + L   R
Sbjct: 579 SVELIEEMKVCGFSADSSTIKMVIDMLSDRR 609


>gi|224085974|ref|XP_002307761.1| predicted protein [Populus trichocarpa]
 gi|222857210|gb|EEE94757.1| predicted protein [Populus trichocarpa]
          Length = 563

 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 113/462 (24%), Positives = 179/462 (38%), Gaps = 77/462 (16%)

Query: 54  VEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGK 113
           +E  L +  + +S + V +VL          + FF W+  Q        ++N+V+  LG+
Sbjct: 120 IERALTECSVDLSLDVVAEVLNRGNLGGEAMIMFFNWAIKQPMISKDVDSYNVVIRALGR 179

Query: 114 NCLFDAMWDAIKSMKKENV-LSLATFASVFSSYVVADRVKDAITTF-DVMEQYGCKHDVF 171
               D M   +  ++ E V ++  TF+ V  S V A RV  AI  F ++ E++G + D  
Sbjct: 180 RKFIDFMVKFLHELRVEGVSMNSETFSIVIDSLVRARRVYKAIQMFGNLEEEFGFERDAE 239

Query: 172 ALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMV 231
           +LN LL  +CR      A  +   V G+I  +  TY +++ GW K   V+  ++ F EM 
Sbjct: 240 SLNVLLQCLCRRSHVGAANSYFNSVKGKIPFNCMTYNVIIGGWSKFGRVSEMQRVFEEME 299

Query: 232 IEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQ 291
            E G+ PD +    SYL+  L     I + V     M E+GC                  
Sbjct: 300 -EDGFSPDCLSF--SYLLEGLGRAGKIEDAVMIFGSMEEKGC------------------ 338

Query: 292 NLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTY 351
                              PDT++YN MIS +         MK    ++     P+I TY
Sbjct: 339 ------------------VPDTNVYNAMISNFISVGNFDECMKYYRCLLSKNCDPNIDTY 380

Query: 352 NILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVA--------- 402
             +   L+K  K+ +A  +F+EM+    V       + +        P+ A         
Sbjct: 381 TRMISGLIKASKVADALEMFDEMLDRGMVTKTGTVTSFIEPLCSFGPPHAAMVIYTKARK 440

Query: 403 --------------------------IKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPE 436
                                     +K W  M E+  S   E    L++GLC++     
Sbjct: 441 VGCKISLSAYKLLLMRLSRFGKCGMMLKIWDEMQESGYSSDMEVYEYLISGLCNIGQFEN 500

Query: 437 AVKYAKGMAEKGIQVTPFALSKLKQILIKARK-EAVYEELLK 477
           AV   +    KG   + F  SKL   L+ + K E  Y   LK
Sbjct: 501 AVLVMEESMRKGFCPSRFICSKLNNKLLASNKVERAYRLFLK 542


>gi|359491272|ref|XP_003634254.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
           mitochondrial-like [Vitis vinifera]
          Length = 450

 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 88/370 (23%), Positives = 169/370 (45%), Gaps = 39/370 (10%)

Query: 41  TLCEIIANTPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHS 100
           T+  ++  T S T+   L+K  +  +   V++VLK  ++H   A++FF+   Y     H 
Sbjct: 41  TIVNLVLKTDSQTLTRTLEKYPVEWTPNLVDRVLKLLWNHGPKALQFFKSLDYHPTYAHV 100

Query: 101 PYAWNLVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASVFSSYVVADRVKDAITTFD 159
             +++  +D+ G+   +  +W  +  M+   +  +  TFA +   YV A +   AI  F 
Sbjct: 101 SSSFDHAIDIAGRLRDYKTLWTLVDRMRTRRLGPNPKTFAIITERYVSAGKPDRAIKIFF 160

Query: 160 VMEQYGCKHDVFALNSLLSAIC----------------------------RDGKTIDAWQ 191
            M ++GC  D+ + N++L  +C                            R G+  +AW+
Sbjct: 161 SMHEHGCVQDLNSFNTILDVLCKSKRVEMADNKLFKVFRGRFRILLKGFFRAGQLKEAWE 220

Query: 192 -FLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLIT 250
            FL++   + + D  TY  ++ G+    +V  A++ F EM+ E G  P +V  Y++++  
Sbjct: 221 FFLQMKKRKCEIDVVTYTTVVHGFGVAGEVRKAQRVFNEMIGE-GVLP-SVATYNAFIQV 278

Query: 251 LLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEE-CLTGQNLRGAEFIWGAMVGRIGF 309
           L K  D +   ++  + M+ +G  P  T + +     C  G+  +  EF+  A +     
Sbjct: 279 LCKK-DNVENAISVFEEMLRKGYMPNSTTYNVVIRGLCHVGRMEKAMEFM--ARMKDDEC 335

Query: 310 RPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRK---LWE 366
            P+  +YN++I  +C + E    + + ++M      P++ TYNIL   +   +K   L  
Sbjct: 336 EPNVQIYNVVIRYFCDAEEIEKGLNVFEKMGDADCLPNLDTYNILISAMFVRKKSDYLLT 395

Query: 367 ASGLFNEMVK 376
           A  L  EMV+
Sbjct: 396 AGKLLIEMVE 405


>gi|302799124|ref|XP_002981321.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
 gi|300150861|gb|EFJ17509.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
          Length = 457

 Score =  111 bits (277), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 105/398 (26%), Positives = 165/398 (41%), Gaps = 39/398 (9%)

Query: 85  VKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKEN-VLSLATFASVFS 143
           + FF+W+  Q++  H   ++N ++++L K+   D ++     M     V +  T+  +  
Sbjct: 1   MAFFQWAGSQVHYNHGTLSYNYLLEVLAKSGRCDHVYGTYNDMLAAGCVPNTYTYGYLLR 60

Query: 144 SYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKP 202
           S   A R ++A + F  M   GC  +VF+ + L++ +CR  K  +A + L  ++DG  +P
Sbjct: 61  SLCQAQRFEEARSVFRGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQP 120

Query: 203 DNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNV----------------PAYDS 246
           +  TY  LL G  K   +  A   F  MV   G  PD V                 AY  
Sbjct: 121 NVVTYGSLLSGLCKMGKLKEAVDLFSRMVYR-GCPPDGVVYNVLIDGFSKKGDMGEAYRL 179

Query: 247 YLITLLKGCDGIYETVNSL-----------------KRMMERGCNPGM-TFFKLAFEECL 288
           +   L KGC     T NSL                 K M+ +GC P + TF  L    C 
Sbjct: 180 FEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCK 239

Query: 289 TGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDI 348
            G  +          +  +G  PD   YN +I   C   +   A +LL EM+ +G  PDI
Sbjct: 240 MGDMVEAHRLFL--EMRSLGCPPDVVSYNTLIRGMCSKGKPHEAQRLLREMIRSGVGPDI 297

Query: 349 QTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKY 408
            +YNIL +   K   L  A  LF E+ K+    +  +    +     +     A   +K 
Sbjct: 298 VSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGAAFVVFKD 357

Query: 409 MIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAE 446
           MI N  +  +     LV GLC    L E+ +  + M +
Sbjct: 358 MIANGSAPDAAVVIPLVIGLCRGERLTESCELFQAMVK 395



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 70/248 (28%), Positives = 114/248 (45%), Gaps = 19/248 (7%)

Query: 153 DAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYAILL 211
           +A   F+ M + GC   VF  NSLLS   R G+        + ++     P+  T+  LL
Sbjct: 175 EAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLL 234

Query: 212 EGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG-CDG--IYETVNSLKRM 268
           +G+ K  D+  A + F EM   +G  PD V +Y+    TL++G C     +E    L+ M
Sbjct: 235 DGFCKMGDMVEAHRLFLEMR-SLGCPPD-VVSYN----TLIRGMCSKGKPHEAQRLLREM 288

Query: 269 MERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNE 328
           +  G  P +  + +  +       L  A  ++   + + G  PD   Y+ +I   C + +
Sbjct: 289 IRSGVGPDIVSYNILIDGYSKSGALDHAIKLF-YEIPKSGLEPDAFSYSTIIDCLCRAGK 347

Query: 329 TGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNE--------NV 380
            GAA  +  +M+ NG+ PD      L   L +G +L E+  LF  MVK E        N+
Sbjct: 348 VGAAFVVFKDMIANGSAPDAAVVIPLVIGLCRGERLTESCELFQAMVKFECVPLIPEYNL 407

Query: 381 LNHENCRA 388
           L ++ C+A
Sbjct: 408 LMYKLCKA 415



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 86/219 (39%), Gaps = 6/219 (2%)

Query: 243 AYDSYLITLLKG--CDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIW 300
           +Y+  L  L K   CD +Y T N    M+  GC P    +          Q    A  ++
Sbjct: 19  SYNYLLEVLAKSGRCDHVYGTYND---MLAAGCVPNTYTYGYLLRSLCQAQRFEEARSVF 75

Query: 301 GAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVK 360
             M  + G  P+   Y+++I+  C   +   A +LL+EM+  G  P++ TY  L   L K
Sbjct: 76  RGMAAQ-GCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCK 134

Query: 361 GRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSET 420
             KL EA  LF+ MV      +       +  +    D   A + ++ M+E  C     T
Sbjct: 135 MGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFT 194

Query: 421 GNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKL 459
            N L++G              K M  +G     F  + L
Sbjct: 195 YNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNL 233



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 71/334 (21%), Positives = 127/334 (38%), Gaps = 43/334 (12%)

Query: 69  TVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSP--YAWNLVVDLLGKNCLFDAMWDAIKS 126
            V  VL   +S  G   + +R     L     P  + +N ++    +   F  +    K 
Sbjct: 158 VVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKD 217

Query: 127 MKKEN-VLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGK 185
           M ++  V ++ TF ++   +     + +A   F  M   GC  DV + N+L+  +C  GK
Sbjct: 218 MLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLIRGMCSKGK 277

Query: 186 TIDAWQFLR-VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAY 244
             +A + LR ++   + PD  +Y IL++G+ K   + +A K F E + + G +PD     
Sbjct: 278 PHEAQRLLREMIRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYE-IPKSGLEPDAFS-- 334

Query: 245 DSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMV 304
                         Y T+                       +CL      GA F+    +
Sbjct: 335 --------------YSTII----------------------DCLCRAGKVGAAFVVFKDM 358

Query: 305 GRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKL 364
              G  PD  +   ++   C       + +L   MV     P I  YN+L   L K ++ 
Sbjct: 359 IANGSAPDAAVVIPLVIGLCRGERLTESCELFQAMVKFECVPLIPEYNLLMYKLCKAKRS 418

Query: 365 WEASGLFNEMVKNENVLNHENCRAAVRVYMDSDD 398
            +   +F+E+ +     + E  +  +     SDD
Sbjct: 419 DDVCEIFHELTERGFSPDVEISKVILETLRRSDD 452


>gi|297828902|ref|XP_002882333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328173|gb|EFH58592.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 506

 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 80/326 (24%), Positives = 135/326 (41%), Gaps = 35/326 (10%)

Query: 84  AVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFS 143
           A+    W+      KHS  A+++ VD+LGK   +D +   ++ M+ + +++L T A +  
Sbjct: 102 ALGVLNWAESCKGHKHSNDAYDMAVDILGKAKKWDRLKVFVERMRGDKLVTLNTIAKIMR 161

Query: 144 SYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPD 203
            +  A   ++A+  FD + ++G + +  ++N LL  +C++ +   A   L  +   I P+
Sbjct: 162 RFAGAGEWEEAVGIFDKLGEFGLEKNTESMNLLLDTLCKEKRVEQARVVLLELKSHITPN 221

Query: 204 NDTYAILLEGWEKERDVANAKKTFGEMV-------------------------------- 231
             T+ I + GW K   V  A  T  EM                                 
Sbjct: 222 AHTFNIFIHGWCKANRVEEALWTIQEMKGHGFRPCVISYTTIIRCYCQQSEFVKVYEMLS 281

Query: 232 -IEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTG 290
            +E    P N   Y + +++ L       E +    RM   GC P   F+          
Sbjct: 282 EMEANGSPPNSITYTT-IMSSLNAQKEFEEALRVATRMKRSGCQPDSLFYNCLIHTLARS 340

Query: 291 QNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEM-VYNGAFPDIQ 349
             L  AE ++   +  +G   +T  YN MI++YC+ +E   A++LL EM   N   PD+ 
Sbjct: 341 GRLEEAERVFRVEMPELGVSINTSTYNSMIAMYCHHDEEDKAIELLKEMESSNLCNPDVH 400

Query: 350 TYNILFEFLVKGRKLWEASGLFNEMV 375
           TY  L     K   + E   L  EMV
Sbjct: 401 TYQPLLRSCFKRGDVVEVGKLLKEMV 426


>gi|308081240|ref|NP_001183570.1| uncharacterized protein LOC100502163 [Zea mays]
 gi|238013140|gb|ACR37605.1| unknown [Zea mays]
          Length = 199

 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 58/115 (50%), Positives = 75/115 (65%), Gaps = 2/115 (1%)

Query: 87  FFRWSAYQ-LNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSY 145
           FFRW+ ++ L  +HSPY+WNL VD+LGKN LF+ MWD +KSM  + +LSLATFASVFSS 
Sbjct: 18  FFRWAGHRHLGHEHSPYSWNLFVDILGKNRLFEPMWDTVKSMHSQQLLSLATFASVFSS- 76

Query: 146 VVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRI 200
           + A      +  F  M +YG   D  ALNSLLSA+CR  +  DA   + V   R+
Sbjct: 77  LAATPGGSPLKAFMDMPRYGMTRDTAALNSLLSALCRANRFDDARAAIPVAALRL 131


>gi|357113487|ref|XP_003558534.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g02420-like [Brachypodium distachyon]
          Length = 520

 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 110/447 (24%), Positives = 187/447 (41%), Gaps = 23/447 (5%)

Query: 45  IIANTPSPT-VEDVLDKTLIRVSQETVEQVL-KFSYSHPGPAVKFFRWSAY--QLNDKHS 100
           I+   P+P+ +E  L  + I +S   ++ VL +F ++H  P       S    +     S
Sbjct: 47  IVTGAPTPSAMESALSTSSILLSAPLLDLVLSRFRFAHGDPLRALSLLSLAVDRCGVAPS 106

Query: 101 PYAWNLVVDLLGKNCLFDAMWDAIKSMKK--ENVLSLATFASVFSSYVVADRVKDAITTF 158
           P+  +  + +LG+   F  MWD + S  +   + ++  T   V         V++ + +F
Sbjct: 107 PFTLDTAIYVLGRARRFTHMWDLVHSYHRLCPDAVTARTAMVVLGRVAKICSVRETVASF 166

Query: 159 DVMEQYGC------KHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLE 212
             + +           D+F  N+LL  +C++    DA           + +  T+ ILL 
Sbjct: 167 RRLLRLFRGREGTESADLF--NALLRTLCQEKSMSDARNVFHAHKYEFQVNRQTFNILLS 224

Query: 213 GWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERG 272
           GW+   D   A+  F EM  E+G DPD V  Y+S +    K  D + +    L  M E+ 
Sbjct: 225 GWKTSED---AEAFFAEMR-ELGIDPDLV-TYNSLIDCQCKNRD-VEKAYKLLDEMREKE 278

Query: 273 CNPG-MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGA 331
            +P  +T+  L     L GQ  +    +    +  +G  PD   YN  I  +  +   G 
Sbjct: 279 ISPDVITYTSLIGGLGLIGQPDKARHLL--KEMCELGCHPDVPAYNATIRNFVIAKRLGD 336

Query: 332 AMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVR 391
           A  L+DEM   G  P+  TYN+ F F      +  A  L+  M       N ++C   VR
Sbjct: 337 AFALMDEMASKGLMPNATTYNLFFRFYYWAYDIGSAWLLYERMRSERCFPNTQSCMFIVR 396

Query: 392 VYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQV 451
           +         A++ W  M+ N     +   ++L   LCD   L EA +    M E G + 
Sbjct: 397 LCHRHGKVMQALELWSDMVGNGFGSFTLVSDVLFDLLCDEGKLEEAERCFHQMVELGQKP 456

Query: 452 TPFALSKLKQILIKARKEAVYEELLKK 478
           +  A  ++K ++  A +E    +L +K
Sbjct: 457 SSVAFRRIKILMQLANREESISKLNEK 483


>gi|115451461|ref|NP_001049331.1| Os03g0208600 [Oryza sativa Japonica Group]
 gi|26006498|gb|AAN77307.1| Hypothetical protein [Oryza sativa Japonica Group]
 gi|108706773|gb|ABF94568.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113547802|dbj|BAF11245.1| Os03g0208600 [Oryza sativa Japonica Group]
          Length = 531

 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 102/438 (23%), Positives = 183/438 (41%), Gaps = 23/438 (5%)

Query: 45  IIANTPSPT-VEDVLDKTLIRVSQETVEQVLK-FSYSHPGPAVKFFRWSAYQLNDKH--- 99
           ++   P+P+ +E  L  + + +S   ++ VL+ F ++H  P             D+H   
Sbjct: 50  MVTAAPTPSAMESALSASGVAISAPLLDLVLRRFRFAHGDPLRALS--LLSLALDRHGVA 107

Query: 100 -SPYAWNLVVDLLGKNCLFDAMWDAIKSMKK--ENVLSLATFASVFSSYVVADRVKDAIT 156
            SP+A +  + +LG+   F  MWD ++S ++   + ++  T   V         V++ + 
Sbjct: 108 PSPFALDTALYVLGRARRFAHMWDLLRSSRRLVPDAVTPRTAMVVLGRVAKVCSVRETVD 167

Query: 157 TFD----VMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLE 212
           +F     ++   G   +    N+LL  +C++    DA      +    K +  T+ ILL 
Sbjct: 168 SFRRLSRMLRGRGDDQEGQLFNALLRTLCQEKSMSDARNVYHALKYEFKVNRQTFNILLS 227

Query: 213 GWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERG 272
           GW+   D     + F   + E+G +PD V  Y+S +    K   G+      L  M E+ 
Sbjct: 228 GWKSAEDA----EAFVAEMRELGVEPDLV-TYNSLIDCHCKN-RGVENAYKLLDEMREKD 281

Query: 273 CNPG-MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGA 331
            +P  +T+  L     L GQ  +    +    +  +G  PD   YN  I  +  +   G 
Sbjct: 282 ISPDVITYTSLIGGLGLIGQPDKAKHLL--KEMHELGCYPDVPAYNTAIRNFVIAKRLGD 339

Query: 332 AMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVR 391
           A  L++EM   G  P+  TYN+ F        +  A  L+  M       N ++C   VR
Sbjct: 340 AFALMEEMASKGLMPNATTYNLFFRCYYWAYDIGSAWQLYERMRSEGCFPNTQSCMFIVR 399

Query: 392 VYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQV 451
           +         A++ W  M+ N     +   ++L   LCD   L EA +    M E G + 
Sbjct: 400 LCHRHGRVAQALELWSDMVNNGFGSFTLVSDVLFDLLCDEGKLDEAERCFHQMIELGQKP 459

Query: 452 TPFALSKLKQILIKARKE 469
           +  A  ++K ++  A +E
Sbjct: 460 SNVAFRRIKILMQLANRE 477


>gi|302769173|ref|XP_002968006.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
 gi|300164744|gb|EFJ31353.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
          Length = 737

 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 96/368 (26%), Positives = 165/368 (44%), Gaps = 9/368 (2%)

Query: 104 WNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQ 163
           +N ++  L  N   D+     + M++    S+ T+  +  +   + R+ DA    + M +
Sbjct: 205 YNTIIKGLCDNGRVDSALVHYRDMQRNCAPSVITYTILVDALCKSARISDASLILEDMIE 264

Query: 164 YGCKHDVFALNSLLSAICRDGKTIDAW-QFLRVVDGRIKPDNDTYAILLEGWEKERDVAN 222
            GC  +V   N+L++  C+ G   +A   F ++++    PD  TY IL++G+ K+    +
Sbjct: 265 AGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQD 324

Query: 223 AKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIY-ETVNSLKRMMERGCNPGMTFFK 281
             K   EMV + G +P N   Y++ + +L+K   G Y +  N  + M+ R C P    F 
Sbjct: 325 GAKLLQEMV-KYGCEP-NFITYNTLMDSLVKS--GKYIDAFNLAQMMLRRDCKPSHFTFN 380

Query: 282 LAFEE-CLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMV 340
           L  +  C  GQ L  A  ++  M  R G  PD + YN+MIS  C +N    A +LL+ M 
Sbjct: 381 LMIDMFCKVGQ-LDLAYELFQLMTDR-GCLPDIYTYNIMISGACRANRIDDARQLLERMT 438

Query: 341 YNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPY 400
             G  PD+ TYN +   L K  ++ EA  ++  +      L+   C   +     S    
Sbjct: 439 EAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLD 498

Query: 401 VAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLK 460
            A K  + M  N  +       +L+ G C    L +++ +   M +KG   T    S + 
Sbjct: 499 DAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVI 558

Query: 461 QILIKARK 468
             L K+ +
Sbjct: 559 DKLCKSAR 566



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 85/366 (23%), Positives = 146/366 (39%), Gaps = 40/366 (10%)

Query: 84  AVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLA-TFASVF 142
           AVKFF W   Q   KHS +  N ++    +       +D  K+ +       + T++++ 
Sbjct: 115 AVKFFDWCTGQPGYKHSKFTCNCLLSAFVRKKKAQEAYDLFKNHRCGLCSPDSITYSTLI 174

Query: 143 SSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKP 202
           + +  A   + A    D ME+ G        N+++  +C +G+   A    R +     P
Sbjct: 175 NGFCKARDFQQAYRLLDEMEKRGIVPHNAVYNTIIKGLCDNGRVDSALVHYRDMQRNCAP 234

Query: 203 DNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETV 262
              TY IL++   K   +++A     +M IE G  P NV  Y++ LI        + E V
Sbjct: 235 SVITYTILVDALCKSARISDASLILEDM-IEAGCAP-NVVTYNT-LINGFCKLGNMDEAV 291

Query: 263 NSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISL 322
               +M+E  C+P                                    D   YN++I  
Sbjct: 292 VLFNQMLENSCSP------------------------------------DVFTYNILIDG 315

Query: 323 YCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLN 382
           YC         KLL EMV  G  P+  TYN L + LVK  K  +A  L   M++ +   +
Sbjct: 316 YCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPS 375

Query: 383 HENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAK 442
           H      + ++       +A + ++ M +  C     T N++++G C  + + +A +  +
Sbjct: 376 HFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLE 435

Query: 443 GMAEKG 448
            M E G
Sbjct: 436 RMTEAG 441



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 79/316 (25%), Positives = 129/316 (40%), Gaps = 45/316 (14%)

Query: 98  KHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAIT 156
           K S + +NL++D+  K    D  ++  + M     L  + T+  + S    A+R+ DA  
Sbjct: 373 KPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQ 432

Query: 157 TFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ----------FLRVV------DGRI 200
             + M + GC  DV   NS++S +C+  +  +A++          FL VV      DG  
Sbjct: 433 LLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLC 492

Query: 201 K--------------------PDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDN 240
           K                    PD   Y IL+ G+ K   +  +   F EM+     D   
Sbjct: 493 KSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEML-----DKGC 547

Query: 241 VPAYDSYLITLLKGCDG--IYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEF 298
           VP   +Y I + K C    + +    LK M+ERG  P    +    +      +   A  
Sbjct: 548 VPTVITYSIVIDKLCKSARVRDGCMLLKTMLERGVTPDAIVYTSVIDGLCKSDSYDEAYE 607

Query: 299 IWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFL 358
           ++  M  + G  P    YN+++   C  +    A+ LL+ M  +G  PD  TYN +F+  
Sbjct: 608 LYKLM-KQTGCAPTVVTYNVLVDKLCKVSRLDEAIHLLEVMESDGCLPDTVTYNSVFDGF 666

Query: 359 VKGRKLWEASGLFNEM 374
            K  +  +A  LF  M
Sbjct: 667 WKSAEHDKAFRLFQAM 682



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 77/319 (24%), Positives = 137/319 (42%), Gaps = 17/319 (5%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           T+ ++  S V + +  DA     +M +  CK   F  N ++   C+ G+   A++  +++
Sbjct: 343 TYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLM 402

Query: 197 DGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG- 254
             R   PD  TY I++ G  +   + +A++   E + E G  PD V  Y+S +  L K  
Sbjct: 403 TDRGCLPDIYTYNIMISGACRANRIDDARQLL-ERMTEAGCPPD-VVTYNSIVSGLCKAS 460

Query: 255 -CDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTG----QNLRGAEFIWGAMVGRIGF 309
             D  YE    L+       N G     +     + G    + L  AE +   M  R G 
Sbjct: 461 QVDEAYEVYEVLR-------NGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREM-ERNGS 512

Query: 310 RPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASG 369
            PD   Y ++I  +C +++   ++    EM+  G  P + TY+I+ + L K  ++ +   
Sbjct: 513 APDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSARVRDGCM 572

Query: 370 LFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLC 429
           L   M++     +     + +     SD    A + +K M +  C+    T N+LV  LC
Sbjct: 573 LLKTMLERGVTPDAIVYTSVIDGLCKSDSYDEAYELYKLMKQTGCAPTVVTYNVLVDKLC 632

Query: 430 DMHMLPEAVKYAKGMAEKG 448
            +  L EA+   + M   G
Sbjct: 633 KVSRLDEAIHLLEVMESDG 651


>gi|297819626|ref|XP_002877696.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297323534|gb|EFH53955.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 1188

 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 101/411 (24%), Positives = 171/411 (41%), Gaps = 19/411 (4%)

Query: 52  PTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLL 111
           P +E  L+++ I +    + +VL           +FF W+  Q    HS      +V +L
Sbjct: 85  PKLELSLNESGIDLRPGLIVRVLSRCGDAGNLGYRFFLWATKQPGYCHSYEVCKSMVKIL 144

Query: 112 GKNCLFDAMWDAIKSMKKEN--VLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHD 169
            K   F A+W  I+ M+KEN  ++    F  +   +  A+ VK A+   D M +YG + D
Sbjct: 145 SKMRQFGAVWGLIEEMRKENPELIEPELFVVLIRRFASANMVKKAVEVLDEMPKYGFEPD 204

Query: 170 VFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGE 229
            +    LL A+C++G   DA +    +  +I P+   +  LL GW +E  +  AK+   +
Sbjct: 205 EYVFGCLLDALCKNGSVKDASKVFEDMREKIPPNLRYFTSLLYGWCREGKLMEAKEVLVQ 264

Query: 230 MVIEVGWDPDNVPAYDSYLITLLKG---CDGIYETVNSLKRMMERGCNPGMTFFKLAFEE 286
           M  E G +PD V         LL G      + +  + L  M +RG  P    + +  + 
Sbjct: 265 MK-EAGLEPDIV-----VFTNLLSGYAHAGKMADAYDLLNDMRKRGYEPNANCYTVLIQA 318

Query: 287 -CLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAF 345
            C T + +  A  ++  M  R G   D   Y  +IS +C          +LD+M   G  
Sbjct: 319 LCRTEKRMDEAMRVFVEM-ERYGCEADIVTYTALISGFCKWGMIDKGYSVLDDMRKKGVM 377

Query: 346 PDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENC---RAAVRVYMDSDDPYVA 402
           P   TY    + LV   K  +       + K + +  H +       +R+  +  +   A
Sbjct: 378 PSQVTY---MQILVAHEKKEQFEECLELIEKMKQIGCHPDLLIYNVVIRLACNFREVKEA 434

Query: 403 IKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTP 453
           ++ W  M  N  S  ++   +++ G      L EA  + K M  +GI   P
Sbjct: 435 VRLWNEMEANGLSPGADMFVIMINGFTSQGYLIEACSHFKEMVSRGIFSAP 485



 Score = 40.4 bits (93), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 28/140 (20%), Positives = 62/140 (44%), Gaps = 2/140 (1%)

Query: 116 LFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALN 174
           + D  +  +  M+K+ V+ S  T+  +  ++   ++ ++ +   + M+Q GC  D+   N
Sbjct: 360 MIDKGYSVLDDMRKKGVMPSQVTYMQILVAHEKKEQFEECLELIEKMKQIGCHPDLLIYN 419

Query: 175 SLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIE 233
            ++   C   +  +A +    ++   + P  D + I++ G+  +  +  A   F EMV  
Sbjct: 420 VVIRLACNFREVKEAVRLWNEMEANGLSPGADMFVIMINGFTSQGYLIEACSHFKEMVSR 479

Query: 234 VGWDPDNVPAYDSYLITLLK 253
             +         S L TLL+
Sbjct: 480 GIFSAPQYGTLKSLLNTLLR 499


>gi|326531326|dbj|BAK05014.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 537

 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 97/404 (24%), Positives = 174/404 (43%), Gaps = 10/404 (2%)

Query: 65  VSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLG---KNCLFDAMW 121
           + ++ V +VL+   S+   A+ FF W+A     +H P  +  ++D+LG   K  L   ++
Sbjct: 110 IDEDVVLKVLQKQRSNWQVALLFFTWAAGLPTYEHGPRTYIEMLDILGRMKKVRLMRQLF 169

Query: 122 DAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAIC 181
           D I   ++  V++   FA + + Y  A +V++AI  F     YG + D+     LL ++C
Sbjct: 170 DEIPEQRRGLVVTNRMFAVLLNRYAGAHKVQEAIEIFYKRNDYGFEVDLVGFQILLMSLC 229

Query: 182 RDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNV 241
           R     +A            P   ++ I+L GW  +  + +AK+ + E +I     PD +
Sbjct: 230 RYKHVEEAEALFLQKKDEFPPVIKSWNIILNGWCVKGSLPDAKRVWNE-IIASKLKPD-L 287

Query: 242 PAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWG 301
             Y +++  L K    +   V     M E+G NP +       ++    + +  A  I+G
Sbjct: 288 FTYGTFINALTKA-GKLSTAVKLFTSMWEKGINPDVAICNCIIDQLCFKKKIPEALKIFG 346

Query: 302 AMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKG 361
            M  R G + D   YN +I  +C    T    +LLD+M   G  P+  TY  + +   K 
Sbjct: 347 EMNDR-GCQADVATYNTLIKHFCKIRRTEKVYELLDDMEKKGCSPNNMTYTYILKTTEKP 405

Query: 362 RKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETG 421
           R   +   L   M ++   L+ +     + +Y+         + W+ M  N       + 
Sbjct: 406 R---DVMNLIQRMEESGCKLDSDTYNLILNLYVSMKYEKGVQQVWEEMERNGSGPDQRSF 462

Query: 422 NLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIK 465
            ++V GL     L +A++Y   M  +G+   P     +K I IK
Sbjct: 463 TIMVHGLHSQGQLDQALQYYTTMKSRGMTPEPRTRILVKAIHIK 506


>gi|356560497|ref|XP_003548528.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04130,
           mitochondrial-like [Glycine max]
          Length = 490

 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 85/355 (23%), Positives = 157/355 (44%), Gaps = 38/355 (10%)

Query: 62  LIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMW 121
            I +S++ V ++L         A+  FRW++ + + +HS  +++++VD+LG+  + + + 
Sbjct: 70  FIPLSRDLVHRLLWRYKDDWKSALGVFRWASSRPSFRHSSESYDMMVDILGRMKVMEKLR 129

Query: 122 DAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAIC 181
           D ++ M++  ++++ T A     +V A +  DA+  FD ++  G + +  ++N LL  +C
Sbjct: 130 DLLEEMREGGLVNMNTVAKAMRRFVGAGQWVDAVRIFDDLQALGLEKNTESMNLLLDTLC 189

Query: 182 RDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDP--- 238
           ++     A +    +   I P+  T+ I + GW K   V  A  T  EM    G+ P   
Sbjct: 190 KEKFVQQAREIFLELKQHIAPNAHTFNIFIHGWCKICRVDEAHWTIQEMK-GYGFHPCVI 248

Query: 239 -------------------------------DNVPAYDSYLITLLKGCDGIYETVNSLKR 267
                                           NV  Y S +  L K      E +   +R
Sbjct: 249 SYSTLIQCYCQEGNFSRVYELLDEMQAQGCSANVITYTSIMCALGKA-KKFEEALKVPER 307

Query: 268 MMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSN 327
           M   GC P   FF            L  A  ++   + + G  P+T  YN MIS++CY  
Sbjct: 308 MRSSGCRPDTLFFNSLIHTLGRAGRLDDAADVFKVEMPKAGVSPNTSTYNSMISMFCYHA 367

Query: 328 ETGAAMKLLDEMVYNGAF-PDIQTYNILFEFLVKGRKL-WEASGLFNEMVKNENV 380
           +   A+++L EM  +G   PD QTY+ L +   +  K+    S + N+M+  +++
Sbjct: 368 QEKRALEILKEMENSGGCKPDAQTYHPLIKSCFRSGKIDGVLSEILNDMINKQHL 422


>gi|222624423|gb|EEE58555.1| hypothetical protein OsJ_09859 [Oryza sativa Japonica Group]
          Length = 858

 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 110/478 (23%), Positives = 194/478 (40%), Gaps = 32/478 (6%)

Query: 7   RRHHDDPSPDPH--NKRKRSTFASHLDVPNLPPTIKTLCEIIANTPSPT-VEDVLDKTLI 63
           RR   +P+P P           AS  D          +  ++   P+P+ +E  L  + +
Sbjct: 17  RRPAREPAPAPEVCGGGGEEVVASDADA-------DAVYRMVTAAPTPSAMESALSASGV 69

Query: 64  RVSQETVEQVLK-FSYSHPGPAVKFFRWSAYQLNDKH----SPYAWNLVVDLLGKNCLFD 118
            +S   ++ VL+ F ++H  P             D+H    SP+A +  + +LG+   F 
Sbjct: 70  AISAPLLDLVLRRFRFAHGDPLRALS--LLSLALDRHGVAPSPFALDTALYVLGRARRFA 127

Query: 119 AMWDAIKSMKK--ENVLSLATFASVFSSYVVADRVKDAITTFD----VMEQYGCKHDVFA 172
            MWD ++S ++   + ++  T   V         V++ + +F     ++   G   +   
Sbjct: 128 HMWDLLRSSRRLVPDAVTPRTAMVVLGRVAKVCSVRETVDSFRRLSRMLRGRGDDQEGQL 187

Query: 173 LNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVI 232
            N+LL  +C++    DA      +    K +  T+ ILL GW+   D     + F   + 
Sbjct: 188 FNALLRTLCQEKSMSDARNVYHALKYEFKVNRQTFNILLSGWKSAEDA----EAFVAEMR 243

Query: 233 EVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPG-MTFFKLAFEECLTGQ 291
           E+G +PD V  Y+S +    K   G+      L  M E+  +P  +T+  L     L GQ
Sbjct: 244 ELGVEPDLV-TYNSLIDCHCKN-RGVENAYKLLDEMREKDISPDVITYTSLIGGLGLIGQ 301

Query: 292 NLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTY 351
             +    +    +  +G  PD   YN  I  +  +   G A  L++EM   G  P+  TY
Sbjct: 302 PDKAKHLL--KEMHELGCYPDVPAYNTAIRNFVIAKRLGDAFALMEEMASKGLMPNATTY 359

Query: 352 NILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIE 411
           N+ F        +  A  L+  M       N ++C   VR+         A++ W  M+ 
Sbjct: 360 NLFFRCYYWAYDIGSAWQLYERMRSEGCFPNTQSCMFIVRLCHRHGRVAQALELWSDMVN 419

Query: 412 NHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKE 469
           N     +   ++L   LCD   L EA +    M E G + +  A  ++K ++  A +E
Sbjct: 420 NGFGSFTLVSDVLFDLLCDEGKLDEAERCFHQMIELGQKPSNVAFRRIKILMQLANRE 477


>gi|242078797|ref|XP_002444167.1| hypothetical protein SORBIDRAFT_07g011860 [Sorghum bicolor]
 gi|241940517|gb|EES13662.1| hypothetical protein SORBIDRAFT_07g011860 [Sorghum bicolor]
          Length = 520

 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 93/367 (25%), Positives = 160/367 (43%), Gaps = 11/367 (2%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVME 162
           AW+L V   GK   FD  W  ++ M+   VL+      +   Y  A+ V  A+ TFDVME
Sbjct: 138 AWHLAVWAAGKARRFDLAWAVVRRMRNRGVLTGRAMVILMERYAAANEVNKAVKTFDVME 197

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGW-EKERDVA 221
           ++  + D     SLL A+C+     DA + L +         + + I+L+GW     D+A
Sbjct: 198 KFKVESDQSVFYSLLRALCKSKNIEDAEELLLLRKKFFPLSAEGFNIILDGWCNVITDLA 257

Query: 222 NAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFK 281
            AK+ + EM       PD + +Y + +I+       +++T+     M +RG  PG+  + 
Sbjct: 258 EAKRVWREMSNHC-ITPDGM-SY-TLMISCFSKVGSLFDTLRVYDEMKKRGWIPGIGVYN 314

Query: 282 LAFEECLTGQN-LRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMV 340
            +    LT +N ++ A  I+  +    G +PD   YN MI   C S +   A  +++ M+
Sbjct: 315 -SLVYVLTRENCVKDAHNIFSKLTDE-GLQPDVETYNSMIVPLCESCKLDEARVVMESMI 372

Query: 341 YNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPY 400
             G  P I TY+      +K   + E+  L  +M ++      +        +   ++  
Sbjct: 373 LKGIVPTISTYHA----FLKQEGIDESLKLLQKMKEDGCGPKSDTFLMLFDKFFLLNESG 428

Query: 401 VAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLK 460
            A++ W  M +   S +      +V GL     +P A++Y   M EKG         + K
Sbjct: 429 NALRVWNEMRKYKISPVRSHYMTVVEGLVKHGCIPRALEYYDEMKEKGFASDTQLDKEFK 488

Query: 461 QILIKAR 467
             L+  R
Sbjct: 489 TFLLNNR 495



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/237 (21%), Positives = 97/237 (40%), Gaps = 9/237 (3%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRV 195
           ++  + S +     + D +  +D M++ G    +   NSL+  + R+    DA   F ++
Sbjct: 277 SYTLMISCFSKVGSLFDTLRVYDEMKKRGWIPGIGVYNSLVYVLTRENCVKDAHNIFSKL 336

Query: 196 VDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
            D  ++PD +TY  ++    +   +  A+     M+++       VP   +Y   L +  
Sbjct: 337 TDEGLQPDVETYNSMIVPLCESCKLDEARVVMESMILK-----GIVPTISTYHAFLKQ-- 389

Query: 256 DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHM 315
           +GI E++  L++M E GC P    F + F++         A  +W  M  +    P    
Sbjct: 390 EGIDESLKLLQKMKEDGCGPKSDTFLMLFDKFFLLNESGNALRVWNEM-RKYKISPVRSH 448

Query: 316 YNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFN 372
           Y  ++           A++  DEM   G   D Q       FL+  R  W  +G +N
Sbjct: 449 YMTVVEGLVKHGCIPRALEYYDEMKEKGFASDTQLDKEFKTFLLNNRDHWRGAGKYN 505


>gi|125542844|gb|EAY88983.1| hypothetical protein OsI_10467 [Oryza sativa Indica Group]
          Length = 525

 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 102/438 (23%), Positives = 183/438 (41%), Gaps = 23/438 (5%)

Query: 45  IIANTPSPT-VEDVLDKTLIRVSQETVEQVLK-FSYSHPGPAVKFFRWSAYQLNDKH--- 99
           ++   P+P+ +E  L  + + +S   ++ VL+ F ++H  P             D+H   
Sbjct: 44  MVTAAPTPSAMESALSASGVAISAPLLDLVLRRFRFAHGDPLRALS--LLSLALDRHGVA 101

Query: 100 -SPYAWNLVVDLLGKNCLFDAMWDAIKSMKK--ENVLSLATFASVFSSYVVADRVKDAIT 156
            SP+A +  + +LG+   F  MWD ++S ++   + ++  T   V         V++ + 
Sbjct: 102 PSPFALDTALYVLGRARRFAHMWDLLRSSRRLVPDAVTPRTAMVVLGRVAKVCSVRETVD 161

Query: 157 TFD----VMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLE 212
           +F     ++   G   +    N+LL  +C++    DA      +    K +  T+ ILL 
Sbjct: 162 SFRRLSRMLRGRGDDQEGQLFNALLRTLCQEKSMSDARNVYHALKYEFKVNRQTFNILLS 221

Query: 213 GWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERG 272
           GW+   D     + F   + E+G +PD V  Y+S +    K   G+      L  M E+ 
Sbjct: 222 GWKSAEDA----EAFVAEMRELGVEPDLV-TYNSLIDCHCKN-RGVENAYKLLDEMREKD 275

Query: 273 CNPG-MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGA 331
            +P  +T+  L     L GQ  +    +    +  +G  PD   YN  I  +  +   G 
Sbjct: 276 ISPDVITYTSLIGGLGLIGQPDKAKHLL--KEMHELGCYPDVPAYNTAIRNFVIAKRLGD 333

Query: 332 AMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVR 391
           A  L++EM   G  P+  TYN+ F        +  A  L+  M       N ++C   VR
Sbjct: 334 AFALMEEMASKGLMPNATTYNLFFRCYYWAYDIGSAWQLYERMRSEGCFPNTQSCMFIVR 393

Query: 392 VYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQV 451
           +         A++ W  M+ N     +   ++L   LCD   L EA +    M E G + 
Sbjct: 394 LCHRHGRVAQALELWSDMVNNGFGSFTLVSDVLFDLLCDEGKLDEAERCFHQMIELGQKP 453

Query: 452 TPFALSKLKQILIKARKE 469
           +  A  ++K ++  A +E
Sbjct: 454 SNVAFRRIKILMQLANRE 471


>gi|302780401|ref|XP_002971975.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
 gi|300160274|gb|EFJ26892.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
          Length = 755

 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 106/413 (25%), Positives = 180/413 (43%), Gaps = 43/413 (10%)

Query: 104 WNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVME 162
           ++ V+    +    D  +   + M +   + +L T+ ++ S       + +A    D M 
Sbjct: 199 YSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMR 258

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDVA 221
           + G + D F+ ++L++ +C+ GK   A + F    +G   PD   Y+ L+ G  K   + 
Sbjct: 259 ERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKAGRLD 318

Query: 222 NAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPG-MTFF 280
            A K F +M  E   +PD V  + + +  L KG D + E    L+ M +R C P  +T+ 
Sbjct: 319 EACKLFEKMR-ENSCEPD-VVTFTALMDGLCKG-DRLQEAQQVLETMEDRNCTPNVITYS 375

Query: 281 KLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMV 340
            L    C TGQ +R A+ ++  M+ R G  P+   YN +I  +C +N   +A+ L++EM 
Sbjct: 376 SLIDGLCKTGQ-VRDAQEVFKRMIVR-GIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMT 433

Query: 341 YNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK---NENVLNHEN-----CR----- 387
             G  PDI TYN L + L K  +  EA+ LF +M     N +V+ +       C+     
Sbjct: 434 ATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERID 493

Query: 388 ----------------------AAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLV 425
                                   V  Y ++     A +  + M+ + CS    T   LV
Sbjct: 494 MARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLV 553

Query: 426 AGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKK 478
            G C +  + EA +  K MA++G Q      + L     +A K  V   LL++
Sbjct: 554 DGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYRLLEE 606



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 87/354 (24%), Positives = 151/354 (42%), Gaps = 18/354 (5%)

Query: 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FL 193
           + TF ++       DR+++A    + ME   C  +V   +SL+  +C+ G+  DA + F 
Sbjct: 336 VVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFK 395

Query: 194 RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLK 253
           R++   I+P+  TY  L+ G+     V +A     EM    G  PD +  Y++ +  L K
Sbjct: 396 RMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMT-ATGCLPD-IITYNTLIDGLCK 453

Query: 254 GCDGIYETVNSL-KRMMERGCNPGMTFFKLAFEECLTG-----QNLRGAEFIWGAMVGRI 307
              G     N L   M  + CNP +  +      CL G     + +  A  ++  M+ + 
Sbjct: 454 --TGRAPEANRLFGDMKAKFCNPDVITYS-----CLIGGFCKLERIDMARTLFDDML-KQ 505

Query: 308 GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEA 367
              PD   ++ ++  YC +     A +LL+EMV +   PD+ TY  L +   K  ++ EA
Sbjct: 506 AVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEA 565

Query: 368 SGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAG 427
             +   M K     N     A +  +  +  P VA +  + M+ N       T   L+ G
Sbjct: 566 RRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYRLLEEMVGNGVQPNVITYRSLIGG 625

Query: 428 LCDMHMLPEAVKYAKGMA-EKGIQVTPFALSKLKQILIKARKEAVYEELLKKCK 480
            C    L EA K  + +  ++  +   FA   +   L +  + +   ELL+  K
Sbjct: 626 FCGTGDLEEARKILERLERDENCKADMFAYRVMMDGLCRTGRMSAALELLEAIK 679



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 94/409 (22%), Positives = 164/409 (40%), Gaps = 44/409 (10%)

Query: 79  SHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLAT 137
           S P  A++FF W++ Q    H+ Y +N + + L +    D     +K+     +  ++ T
Sbjct: 2   SDPDAALRFFHWASKQQGFDHNVYTYNRLFEALLRARRIDETCHILKNGWPPGITPNVFT 61

Query: 138 FASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR--- 194
           +A V      +  +  A    + M + G   D    N ++ A+C+   T  A  + R   
Sbjct: 62  YAVVIQGLCKSGDLDKACELLEEMRESGPVPDAAIYNFVIHALCKARNTAKALDYFRSME 121

Query: 195 ----------VVDGRIK--------------------PDNDTYAILLEGWEKERDVANAK 224
                     ++DG  K                    P+  TY +L+ G+ K   V  A 
Sbjct: 122 CEKNVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAY 181

Query: 225 KTFGEMVIEVGWDPDNVPAYDSYLITLLKG--CDGIYETVNSLKRMMERGCNPGM-TFFK 281
               EM  E G  P NV  Y + +    +    D  Y+     ++M+E GC P + T+  
Sbjct: 182 LLLKEMK-ESGLAP-NVVTYSTVIHGFCRQTKVDTAYKL---FRQMVENGCMPNLVTYNT 236

Query: 282 LAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVY 341
           L    C  G      E +   M  R G +PD   Y+ +++  C + +   A+K+ ++   
Sbjct: 237 LLSGLCRNGLMDEAYELL-DEMRER-GLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSN 294

Query: 342 NGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYV 401
               PD+  Y+ L   L K  +L EA  LF +M +N    +     A +      D    
Sbjct: 295 GDCPPDVVAYSTLIAGLCKAGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQE 354

Query: 402 AIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQ 450
           A +  + M + +C+    T + L+ GLC    + +A +  K M  +GI+
Sbjct: 355 AQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIE 403



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 69/268 (25%), Positives = 123/268 (45%), Gaps = 15/268 (5%)

Query: 116 LFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNS 175
           LFD M      +K+  +  + TF+++   Y  A  V DA    + M    C  DV+   S
Sbjct: 498 LFDDM------LKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTS 551

Query: 176 LLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEV 234
           L+   C+ G+ ++A + L+ +  R  +P+  TY  L++ + +      A +   EMV   
Sbjct: 552 LVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYRLLEEMVGN- 610

Query: 235 GWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRM-MERGCNPGMTFFKLAFEE-CLTGQN 292
           G  P NV  Y S LI    G   + E    L+R+  +  C   M  +++  +  C TG+ 
Sbjct: 611 GVQP-NVITYRS-LIGGFCGTGDLEEARKILERLERDENCKADMFAYRVMMDGLCRTGRM 668

Query: 293 LRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYN-GAFPDIQTY 351
               E +    + + G  P   +Y  +I   C   E G AM++L+EM  +  + P+ + Y
Sbjct: 669 SAALELLEA--IKQSGTPPRHDIYVALIRGLCQGKELGKAMEVLEEMTLSRKSRPNAEAY 726

Query: 352 NILFEFLVKGRKLWEASGLFNEMVKNEN 379
             + + L +  +  EA+ L +E++ N+ 
Sbjct: 727 EAVIQELAREGRHEEANALADELLGNKG 754


>gi|302821481|ref|XP_002992403.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
 gi|300139819|gb|EFJ06553.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
          Length = 448

 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 96/368 (26%), Positives = 165/368 (44%), Gaps = 9/368 (2%)

Query: 104 WNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQ 163
           +N ++  L  N   D+     + M++    S+ T+  +  +   + R+ DA    + M +
Sbjct: 71  YNTIIKGLCDNGRVDSALVHYRDMQRHCAPSVITYTILVDALCKSARISDASLILEDMIE 130

Query: 164 YGCKHDVFALNSLLSAICRDGKTIDAW-QFLRVVDGRIKPDNDTYAILLEGWEKERDVAN 222
            GC  +V   N+L++  C+ G   +A   F ++++    PD  TY IL++G+ K+    +
Sbjct: 131 AGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQD 190

Query: 223 AKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIY-ETVNSLKRMMERGCNPGMTFFK 281
             K   EMV + G +P N   Y++ + +L+K   G Y +  N  + M+ R C P    F 
Sbjct: 191 GAKLLQEMV-KYGCEP-NFITYNTLMDSLVKS--GKYIDAFNLAQMMLRRDCKPSHFTFN 246

Query: 282 LAFEE-CLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMV 340
           L  +  C  GQ L  A  ++  M  R G  PD + YN+MIS  C +N    A +LL+ M 
Sbjct: 247 LMIDMFCKVGQ-LDLAYELFQLMTDR-GCLPDIYTYNIMISGACRANRIDDARQLLERMT 304

Query: 341 YNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPY 400
             G  PD+ TYN +   L K  ++ EA  ++  +      L+   C   +     S    
Sbjct: 305 EAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLD 364

Query: 401 VAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLK 460
            A K  + M  N  +       +L+ G C    L +++ +   M +KG   T    S + 
Sbjct: 365 DAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVI 424

Query: 461 QILIKARK 468
             L K+ +
Sbjct: 425 DKLCKSAR 432



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 89/339 (26%), Positives = 141/339 (41%), Gaps = 39/339 (11%)

Query: 174 NSLLSAICRDGKTIDAWQFLRV-VDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEM-- 230
           N LLSA  R  K  +A+   +  + G   PD+ TY+ L+ G+ K RD   A +   EM  
Sbjct: 2   NCLLSAFVRKKKAQEAYDLFKNHLCGLCSPDSITYSTLINGFCKARDFQQAYRLLDEMEK 61

Query: 231 ------------VIEVGWDPDNV---------------PAYDSYLITLLKGCDG--IYET 261
                       +I+   D   V               P+  +Y I +   C    I + 
Sbjct: 62  RGIVPHNAVYNTIIKGLCDNGRVDSALVHYRDMQRHCAPSVITYTILVDALCKSARISDA 121

Query: 262 VNSLKRMMERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMI 320
              L+ M+E GC P + T+  L    C  G N+  A  ++  M+      PD   YN++I
Sbjct: 122 SLILEDMIEAGCAPNVVTYNTLINGFCKLG-NMDEAVVLFNQMLEN-SCSPDVFTYNILI 179

Query: 321 SLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENV 380
             YC         KLL EMV  G  P+  TYN L + LVK  K  +A  L   M++ +  
Sbjct: 180 DGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCK 239

Query: 381 LNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKY 440
            +H      + ++       +A + ++ M +  C     T N++++G C  + + +A + 
Sbjct: 240 PSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQL 299

Query: 441 AKGMAEKGIQVTPFALSKLKQILIKARK--EA--VYEEL 475
            + M E G        + +   L KA +  EA  VYE L
Sbjct: 300 LERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVL 338


>gi|302772597|ref|XP_002969716.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
 gi|300162227|gb|EFJ28840.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
          Length = 457

 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 104/398 (26%), Positives = 165/398 (41%), Gaps = 39/398 (9%)

Query: 85  VKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKEN-VLSLATFASVFS 143
           + FF+W+  Q++  H   ++N ++++L K+   D ++     M     V +  T+  +  
Sbjct: 1   MAFFQWAGSQVHYNHGTLSYNYLLEVLAKSGRCDHVYGTYNDMLGAGCVPNTYTYGYLLR 60

Query: 144 SYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKP 202
           S   A R ++A + F  M   GC  +VF+ + L++ +CR  K  +A + L  ++DG  +P
Sbjct: 61  SLCQAQRFEEARSVFRGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQP 120

Query: 203 DNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNV----------------PAYDS 246
           +  TY  LL G  K   +  A   F  MV   G  PD V                 AY  
Sbjct: 121 NVVTYGSLLSGLCKMGKLKEAVDLFSRMVYR-GCPPDGVVYNVLIDGFSKKGDMGEAYRL 179

Query: 247 YLITLLKGCDGIYETVNSL-----------------KRMMERGCNPGM-TFFKLAFEECL 288
           +   L KGC     T NSL                 K M+ +GC P + TF  L    C 
Sbjct: 180 FEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCK 239

Query: 289 TGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDI 348
            G  +          +  +G  PD   YN ++   C   +   A +LL EM+ +G  PDI
Sbjct: 240 MGDMVEAHRLFL--EMRSLGCPPDVVSYNTLMRGMCSKGKPHEAQRLLREMIRSGVGPDI 297

Query: 349 QTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKY 408
            +YNIL +   K   L  A  LF E+ K+    +  +    +     +     A   +K 
Sbjct: 298 VSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGAAFVVFKD 357

Query: 409 MIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAE 446
           MI N  +  +     LV GLC    L E+ +  + M +
Sbjct: 358 MIANGSAPDAAVVIPLVIGLCRGERLTESCELFQAMVK 395



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 70/248 (28%), Positives = 114/248 (45%), Gaps = 19/248 (7%)

Query: 153 DAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYAILL 211
           +A   F+ M + GC   VF  NSLLS   R G+        + ++     P+  T+  LL
Sbjct: 175 EAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLL 234

Query: 212 EGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG-CDG--IYETVNSLKRM 268
           +G+ K  D+  A + F EM   +G  PD V +Y+    TL++G C     +E    L+ M
Sbjct: 235 DGFCKMGDMVEAHRLFLEMR-SLGCPPD-VVSYN----TLMRGMCSKGKPHEAQRLLREM 288

Query: 269 MERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNE 328
           +  G  P +  + +  +       L  A  ++   + + G  PD   Y+ +I   C + +
Sbjct: 289 IRSGVGPDIVSYNILIDGYSKSGALDHAIKLF-YEIPKSGLEPDAFSYSTIIDCLCRAGK 347

Query: 329 TGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNE--------NV 380
            GAA  +  +M+ NG+ PD      L   L +G +L E+  LF  MVK E        N+
Sbjct: 348 VGAAFVVFKDMIANGSAPDAAVVIPLVIGLCRGERLTESCELFQAMVKFECVPLIPEYNL 407

Query: 381 LNHENCRA 388
           L ++ C+A
Sbjct: 408 LMYKLCKA 415



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 86/219 (39%), Gaps = 6/219 (2%)

Query: 243 AYDSYLITLLKG--CDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIW 300
           +Y+  L  L K   CD +Y T N    M+  GC P    +          Q    A  ++
Sbjct: 19  SYNYLLEVLAKSGRCDHVYGTYND---MLGAGCVPNTYTYGYLLRSLCQAQRFEEARSVF 75

Query: 301 GAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVK 360
             M  + G  P+   Y+++I+  C   +   A +LL+EM+  G  P++ TY  L   L K
Sbjct: 76  RGMAAQ-GCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCK 134

Query: 361 GRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSET 420
             KL EA  LF+ MV      +       +  +    D   A + ++ M+E  C     T
Sbjct: 135 MGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFT 194

Query: 421 GNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKL 459
            N L++G              K M  +G     F  + L
Sbjct: 195 YNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNL 233



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 72/338 (21%), Positives = 128/338 (37%), Gaps = 43/338 (12%)

Query: 69  TVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSP--YAWNLVVDLLGKNCLFDAMWDAIKS 126
            V  VL   +S  G   + +R     L     P  + +N ++    +   F  +    K 
Sbjct: 158 VVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKD 217

Query: 127 MKKEN-VLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGK 185
           M ++  V ++ TF ++   +     + +A   F  M   GC  DV + N+L+  +C  GK
Sbjct: 218 MLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLMRGMCSKGK 277

Query: 186 TIDAWQFLR-VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAY 244
             +A + LR ++   + PD  +Y IL++G+ K   + +A K F E + + G +PD     
Sbjct: 278 PHEAQRLLREMIRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYE-IPKSGLEPDAFS-- 334

Query: 245 DSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMV 304
                         Y T+                       +CL      GA F+    +
Sbjct: 335 --------------YSTII----------------------DCLCRAGKVGAAFVVFKDM 358

Query: 305 GRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKL 364
              G  PD  +   ++   C       + +L   MV     P I  YN+L   L K ++ 
Sbjct: 359 IANGSAPDAAVVIPLVIGLCRGERLTESCELFQAMVKFECVPLIPEYNLLMYKLCKAKRS 418

Query: 365 WEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVA 402
            +   +F+E+ +     + E  +  +     SDD   A
Sbjct: 419 DDVCEIFHELTERGFSPDVEISKVILETLRRSDDKEAA 456


>gi|302791141|ref|XP_002977337.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
 gi|300154707|gb|EFJ21341.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
          Length = 636

 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 106/414 (25%), Positives = 181/414 (43%), Gaps = 43/414 (10%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVM 161
            ++ V+    +    D  +   + M +   + +L T+ ++ S       + +A    D M
Sbjct: 79  TYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEM 138

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDV 220
            + G + D F+ ++L++ +C+ GK   A + F    +G   PD   Y+ L+ G  K   +
Sbjct: 139 RERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKTGRL 198

Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPG-MTF 279
             A K F E + E   +PD V  + + +  L KG D + E    L+ M +R C P  +T+
Sbjct: 199 DEACKLF-EKMRENSCEPD-VVTFTALMDGLCKG-DRLQEAQQVLETMEDRNCTPNVITY 255

Query: 280 FKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEM 339
             L    C TGQ +R A+ ++  M+ R G  P+   YN +I  +C +N   +A+ L++EM
Sbjct: 256 SSLIDGLCKTGQ-VRDAQEVFKRMIVR-GIEPNVVTYNSLIHGFCMTNGVDSALLLMEEM 313

Query: 340 VYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK---NENVLNHEN-----CR---- 387
              G  PDI TYN L + L K  +  EA+ LF +M     N +V+ +       C+    
Sbjct: 314 TATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERI 373

Query: 388 -----------------------AAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLL 424
                                    V  Y ++     A +  + M+ + CS    T   L
Sbjct: 374 DMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSL 433

Query: 425 VAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKK 478
           V G C +  + EA +  K MA++G Q      + L     +A K  V  +LL++
Sbjct: 434 VDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYKLLEE 487



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 93/387 (24%), Positives = 164/387 (42%), Gaps = 19/387 (4%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVM 161
           A++ ++  L K    D      + M++ +    + TF ++       DR+++A    + M
Sbjct: 184 AYSTLIAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETM 243

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDV 220
           E   C  +V   +SL+  +C+ G+  DA + F R++   I+P+  TY  L+ G+     V
Sbjct: 244 EDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGV 303

Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSL-KRMMERGCNPGMTF 279
            +A     EM    G  PD +  Y++ +  L K   G     N L   M  + CNP +  
Sbjct: 304 DSALLLMEEMT-ATGCLPD-IITYNTLIDGLCK--TGRAPEANRLFGDMKAKFCNPDVIT 359

Query: 280 FKLAFEECLTG-----QNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMK 334
           +      CL G     + +  A  ++  M+ +    PD   ++ ++  YC +     A +
Sbjct: 360 YS-----CLIGGFCKLERIDMARTLFDDML-KQAVLPDVVTFSTLVEGYCNAGLVDDAER 413

Query: 335 LLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYM 394
           LL+EMV +   PD+ TY  L +   K  ++ EA  +   M K     N     A +  + 
Sbjct: 414 LLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFC 473

Query: 395 DSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMA-EKGIQVTP 453
            +  P VA K  + M+ N       T   L+ G C    L EA K  + +  ++  +   
Sbjct: 474 RAGKPTVAYKLLEEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKMLERLERDENCKADM 533

Query: 454 FALSKLKQILIKARKEAVYEELLKKCK 480
           FA   +   L +  + +   ELL+  K
Sbjct: 534 FAYRVMMDGLCRTGRMSAALELLEAIK 560



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 70/268 (26%), Positives = 123/268 (45%), Gaps = 15/268 (5%)

Query: 116 LFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNS 175
           LFD M      +K+  +  + TF+++   Y  A  V DA    + M    C  DV+   S
Sbjct: 379 LFDDM------LKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTS 432

Query: 176 LLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEV 234
           L+   C+ G+ ++A + L+ +  R  +P+  TY  L++ + +      A K   EMV   
Sbjct: 433 LVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYKLLEEMVGN- 491

Query: 235 GWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRM-MERGCNPGMTFFKLAFEE-CLTGQN 292
           G  P NV  Y S LI    G   + E    L+R+  +  C   M  +++  +  C TG+ 
Sbjct: 492 GVQP-NVITYRS-LIGGFCGTGDLEEARKMLERLERDENCKADMFAYRVMMDGLCRTGRM 549

Query: 293 LRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYN-GAFPDIQTY 351
               E +    + + G  P   +Y  +I   C   E G AM++L+EM  +  + P+ + Y
Sbjct: 550 SAALELLEA--IKQSGTPPRHDIYVALIRGLCQGKELGKAMEVLEEMTLSRKSRPNAEAY 607

Query: 352 NILFEFLVKGRKLWEASGLFNEMVKNEN 379
             + + L +  +  EA+ L +E++ N+ 
Sbjct: 608 EAVIQELAREGRHEEANALADELLGNKG 635



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 74/173 (42%), Gaps = 6/173 (3%)

Query: 308 GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEA 367
           G  P+   Y+ +I  +C   +   A KL  +MV NG  P++ TYN L   L +   + EA
Sbjct: 72  GLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEA 131

Query: 368 SGLFNEMVK---NENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLL 424
             L +EM +     +  +++   A +      D   +A+K ++      C       + L
Sbjct: 132 YELLDEMRERGLQPDKFSYDTLMAGLCKTGKID---MALKVFEDNSNGDCPPDVVAYSTL 188

Query: 425 VAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLK 477
           +AGLC    L EA K  + M E   +      + L   L K  +    +++L+
Sbjct: 189 IAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLE 241



 Score = 47.4 bits (111), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 64/161 (39%), Gaps = 35/161 (21%)

Query: 308 GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEA 367
           G  P+   YN++I+ +C  ++   A  LL EM  +G  P++ TY+ +     +  K+  A
Sbjct: 37  GTVPNEWTYNVLINGFCKVHKVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTA 96

Query: 368 SGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAG 427
             LF +MV                                   EN C     T N L++G
Sbjct: 97  YKLFRQMV-----------------------------------ENGCMPNLVTYNTLLSG 121

Query: 428 LCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARK 468
           LC   ++ EA +    M E+G+Q   F+   L   L K  K
Sbjct: 122 LCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGK 162


>gi|224123318|ref|XP_002319049.1| predicted protein [Populus trichocarpa]
 gi|222857425|gb|EEE94972.1| predicted protein [Populus trichocarpa]
          Length = 585

 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 97/360 (26%), Positives = 155/360 (43%), Gaps = 18/360 (5%)

Query: 101 PYAWNLVVDLLGKNCLFDAMWD----AIKSMKKENVLSL----ATFASVFSSYVVADRVK 152
           P  + L + +   NCL  +  D    A  ++ K   L L     TF ++ +      ++ 
Sbjct: 102 PNVYTLTILI---NCLCHSNRDHVHFAFSALGKMFKLGLQPTHVTFGTLLNGLCSKAKII 158

Query: 153 DAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILL 211
           DA+  FD + + G    +    +++  +C+ G T +A Q L+ ++ +  KPD   Y  ++
Sbjct: 159 DAVKLFDEIGKMGFAPSLITYTTIIKGLCKIGHTTNALQLLKKMEEKGCKPDVVAYNTVI 218

Query: 212 EGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMER 271
           +   K+R    A   F EMV +    P NV  Y S L         + E  +  K+M+ R
Sbjct: 219 DSLCKDRRANEAMYFFSEMVDQ--GIPPNVVTYSSILHGFCN-LGQLNEATSLFKQMIGR 275

Query: 272 GCNPG-MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETG 330
              P  +TF  L    C  G  L         M+   G  PD + Y+ ++  YC  ++  
Sbjct: 276 NVMPNTVTFTILVDGLCKEGMILEARRVF--EMMTENGVEPDAYTYSALMDGYCLQSQMD 333

Query: 331 AAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAV 390
            A KL D MV  G  P ++ YNIL     K R+L EA  L +EM   +   +       +
Sbjct: 334 EAQKLFDIMVGKGFAPSVRVYNILINGHCKSRRLNEAKTLLSEMYDRDLTPDTVTYSTLM 393

Query: 391 RVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQ 450
           + +  +  P VA K +K M        S T ++L+ GLC    L EA +  K M E  I+
Sbjct: 394 QGFCQAGRPQVAQKLFKEMCSYGLLPDSITYSILLDGLCKHGHLDEAFRLLKAMQESKIE 453



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 77/352 (21%), Positives = 142/352 (40%), Gaps = 17/352 (4%)

Query: 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR 194
           +  F  +  S V        I+    M+    + +V+ L  L++ +C   +  D   F  
Sbjct: 69  VVVFNKLLGSLVKKKHYSTVISLCKQMDLSNIRPNVYTLTILINCLCHSNR--DHVHFAF 126

Query: 195 VVDGR-----IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLI 249
              G+     ++P + T+  LL G   +  + +A K F E + ++G+ P  +        
Sbjct: 127 SALGKMFKLGLQPTHVTFGTLLNGLCSKAKIIDAVKLFDE-IGKMGFAPSLIT-----YT 180

Query: 250 TLLKGCDGIYETVNSL---KRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGR 306
           T++KG   I  T N+L   K+M E+GC P +  +    +     +    A + +  MV +
Sbjct: 181 TIIKGLCKIGHTTNALQLLKKMEEKGCKPDVVAYNTVIDSLCKDRRANEAMYFFSEMVDQ 240

Query: 307 IGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWE 366
            G  P+   Y+ ++  +C   +   A  L  +M+     P+  T+ IL + L K   + E
Sbjct: 241 -GIPPNVVTYSSILHGFCNLGQLNEATSLFKQMIGRNVMPNTVTFTILVDGLCKEGMILE 299

Query: 367 ASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVA 426
           A  +F  M +N    +     A +  Y        A K +  M+    +      N+L+ 
Sbjct: 300 ARRVFEMMTENGVEPDAYTYSALMDGYCLQSQMDEAQKLFDIMVGKGFAPSVRVYNILIN 359

Query: 427 GLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKK 478
           G C    L EA      M ++ +       S L Q   +A +  V ++L K+
Sbjct: 360 GHCKSRRLNEAKTLLSEMYDRDLTPDTVTYSTLMQGFCQAGRPQVAQKLFKE 411



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 73/306 (23%), Positives = 127/306 (41%), Gaps = 12/306 (3%)

Query: 125 KSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRD 183
           K M   NV+ +  TF  +         + +A   F++M + G + D +  ++L+   C  
Sbjct: 270 KQMIGRNVMPNTVTFTILVDGLCKEGMILEARRVFEMMTENGVEPDAYTYSALMDGYCLQ 329

Query: 184 GKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVP 242
            +  +A +   ++ G+   P    Y IL+ G  K R +  AK    EM     +D D  P
Sbjct: 330 SQMDEAQKLFDIMVGKGFAPSVRVYNILINGHCKSRRLNEAKTLLSEM-----YDRDLTP 384

Query: 243 AYDSYLITLLKG-CDGIYETVNS--LKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFI 299
              +Y  TL++G C      V     K M   G  P    + +  +      +L  A  +
Sbjct: 385 DTVTY-STLMQGFCQAGRPQVAQKLFKEMCSYGLLPDSITYSILLDGLCKHGHLDEAFRL 443

Query: 300 WGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLV 359
             AM       P   +YN++I   C   +  AA +L   +   G  P + TY ++   L+
Sbjct: 444 LKAM-QESKIEPHICIYNILIQGMCNFGKLEAARELFSNLFVKGIQPSVVTYTVMISGLL 502

Query: 360 KGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSE 419
           K     EA  +F +MV N  + N      A++ ++ + DP  A++  + M+    S  S 
Sbjct: 503 KEGLSNEACEMFRKMVVNGCLPNSCTYNVAIQGFLRNGDPSNAVRLIEEMVGRGFSADSS 562

Query: 420 TGNLLV 425
           T  +L+
Sbjct: 563 TFQMLL 568



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 57/258 (22%), Positives = 103/258 (39%), Gaps = 42/258 (16%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RV 195
           T++++   Y +  ++ +A   FD+M   G    V   N L++  C+  +  +A   L  +
Sbjct: 318 TYSALMDGYCLQSQMDEAQKLFDIMVGKGFAPSVRVYNILINGHCKSRRLNEAKTLLSEM 377

Query: 196 VDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
            D  + PD  TY+ L++G+ +      A+K F EM    G  PD++    +Y I L   C
Sbjct: 378 YDRDLTPDTVTYSTLMQGFCQAGRPQVAQKLFKEMC-SYGLLPDSI----TYSILLDGLC 432

Query: 256 DGIY--ETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAE------FIWG------ 301
              +  E    LK M E    P +  + +  +       L  A       F+ G      
Sbjct: 433 KHGHLDEAFRLLKAMQESKIEPHICIYNILIQGMCNFGKLEAARELFSNLFVKGIQPSVV 492

Query: 302 ---AMVGRI-------------------GFRPDTHMYNMMISLYCYSNETGAAMKLLDEM 339
               M+  +                   G  P++  YN+ I  +  + +   A++L++EM
Sbjct: 493 TYTVMISGLLKEGLSNEACEMFRKMVVNGCLPNSCTYNVAIQGFLRNGDPSNAVRLIEEM 552

Query: 340 VYNGAFPDIQTYNILFEF 357
           V  G   D  T+ +L + 
Sbjct: 553 VGRGFSADSSTFQMLLDL 570


>gi|15239161|ref|NP_201383.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170571|sp|Q9FH87.1|PP447_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g65820
 gi|9758569|dbj|BAB09050.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010728|gb|AED98111.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 637

 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 99/411 (24%), Positives = 172/411 (41%), Gaps = 7/411 (1%)

Query: 52  PTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLL 111
           P +E  L+++ + +    +E+VL           +FF W+A Q    HS   +  +V +L
Sbjct: 98  PKLELALNESGVELRPGLIERVLNRCGDAGNLGYRFFVWAAKQPRYCHSIEVYKSMVKIL 157

Query: 112 GKNCLFDAMWDAIKSMKKEN--VLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHD 169
            K   F A+W  I+ M+KEN  ++    F  +   +  AD VK AI   D M ++G + D
Sbjct: 158 SKMRQFGAVWGLIEEMRKENPQLIEPELFVVLVQRFASADMVKKAIEVLDEMPKFGFEPD 217

Query: 170 VFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGE 229
            +    LL A+C+ G   DA +    +  R   +   +  LL GW +   +  AK    +
Sbjct: 218 EYVFGCLLDALCKHGSVKDAAKLFEDMRMRFPVNLRYFTSLLYGWCRVGKMMEAKYVLVQ 277

Query: 230 MVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLT 289
           M  E G++PD V   +  L++       + +  + L+ M  RG  P    + +  +    
Sbjct: 278 MN-EAGFEPDIVDYTN--LLSGYANAGKMADAYDLLRDMRRRGFEPNANCYTVLIQALCK 334

Query: 290 GQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQ 349
              +  A  ++  M  R     D   Y  ++S +C   +      +LD+M+  G  P   
Sbjct: 335 VDRMEEAMKVFVEM-ERYECEADVVTYTALVSGFCKWGKIDKCYIVLDDMIKKGLMPSEL 393

Query: 350 TYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYM 409
           TY  +     K     E   L  +M + E   +       +R+     +   A++ W  M
Sbjct: 394 TYMHIMVAHEKKESFEECLELMEKMRQIEYHPDIGIYNVVIRLACKLGEVKEAVRLWNEM 453

Query: 410 IENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI-QVTPFALSKL 459
            EN  S   +T  +++ GL     L EA  + K M  +G+  V+ +   KL
Sbjct: 454 EENGLSPGVDTFVIMINGLASQGCLLEASDHFKEMVTRGLFSVSQYGTLKL 504


>gi|115455297|ref|NP_001051249.1| Os03g0746400 [Oryza sativa Japonica Group]
 gi|113549720|dbj|BAF13163.1| Os03g0746400, partial [Oryza sativa Japonica Group]
          Length = 613

 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 105/427 (24%), Positives = 180/427 (42%), Gaps = 21/427 (4%)

Query: 58  LDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLF 117
           +D   +RV+   V+++L    +    A  FF W   Q    H   +++L+VD+LGK   F
Sbjct: 182 MDCCSVRVTGCLVDKILTRFSNDWVAAFGFFMWVGTQGGYCHCADSYDLMVDILGKFKQF 241

Query: 118 DAMWDAIKSMKK-ENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSL 176
           D MW  I  M +   ++SL T   V      A R  +AI  F  M+++G   D  A+N L
Sbjct: 242 DLMWGLINQMVEVGGLMSLMTMTKVMRRLAGASRWTEAIDAFHKMDRFGVVKDTKAMNVL 301

Query: 177 LSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGW 236
           L  +C++     A    + + G I PD +++  L+ GW K R +  A  T  EM  + G+
Sbjct: 302 LDTLCKERSVKRARGVFQELRGTIPPDENSFNTLVHGWCKARMLKEALDTMEEMK-QHGF 360

Query: 237 DPDNVPAYDSYLITLLKGCDGIYETVNS-LKRMMERGCNPGMTFFKLAFEECLTGQNLRG 295
            P +V  Y S +       D  ++TV + L  M +R C P +  + +           R 
Sbjct: 361 SP-SVVTYTSLVEAYCMEKD--FQTVYALLDEMRKRRCPPNVVTYTILMHALGKAGRTRE 417

Query: 296 AEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILF 355
           A   +  +    G  PD   YN +I +   +     A  +++EM   G  P++ T+N L 
Sbjct: 418 ALDTFDKL-KEDGVAPDASFYNSLIYILGRAGRLEDAYSVVEEMRTTGIAPNVTTFNTLI 476

Query: 356 EFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVY-----MDSDDPYVAIKFWK--Y 408
                  +   A  L  +M         ++C   ++ Y     +     +V I  +   +
Sbjct: 477 SAACDHSQAENALKLLVKM-------EEQSCNPDIKTYTPLLKLCCKRQWVKILLFLVCH 529

Query: 409 MIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARK 468
           M     S    T  LLV+ LC    + ++  + + M  KG          + + L K   
Sbjct: 530 MFRKDISPDFSTYTLLVSWLCRNGKVAQSCLFLEEMVSKGFAPKQETFDLVMEKLEKRNL 589

Query: 469 EAVYEEL 475
           ++VY+++
Sbjct: 590 QSVYKKI 596


>gi|255580386|ref|XP_002531020.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223529395|gb|EEF31358.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 530

 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 102/458 (22%), Positives = 200/458 (43%), Gaps = 27/458 (5%)

Query: 25  TFASHLDVPNLPPTI---KTLCEIIANTPSPTVEDVLDKTLIR------VSQETVEQVLK 75
           T  +H+ +     +I   + + +II +   P   + L  TL++      +S + VE VL 
Sbjct: 43  TLCNHIGLSGFTHSISEVERITKIINDNSFPN--ESLYPTLLKHLNPAALSTDFVENVLG 100

Query: 76  ---FSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKEN- 131
               ++S+   A++FFR+S    +   S +A+ + + +L +   F+  W+ +  + K + 
Sbjct: 101 RLFAAHSNGLKALEFFRFSLRHSHFNPSSFAFEMTLHILARMRYFEKAWELMMEIGKSHP 160

Query: 132 -VLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFA---LNSLLSAICRDGKTI 187
            +L+L +   + S        +D +  F  ME+       F     N LL A C   +  
Sbjct: 161 SLLTLKSMGIMLSKIAKFQSYEDTLEAFKRMEKTVFVGKTFGTEEFNVLLQAFCSQREVK 220

Query: 188 DAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSY 247
           +A    + +  +  P+  T  ILL G++K RD+  A + F   ++  G+   ++    +Y
Sbjct: 221 EARSVFQKMHDQFNPNTKTMNILLLGFKKARDIT-AMELFYHEIVRRGFKATSL----TY 275

Query: 248 LITLLKGCDGIY--ETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVG 305
            I +   C   Y  + +   + M +  C P +             +N+  A  ++   +G
Sbjct: 276 NIRIDAYCKKGYFGDGLRIFEEMEKDNCPPTLETITTLIHGAGVARNIHKARHLFDE-IG 334

Query: 306 RIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLW 365
           +   +PDT  YN +IS      +  +AM+L+DEM       D  TY+ +F  L+K     
Sbjct: 335 KRNLKPDTGAYNALISSLVKCKDIESAMRLMDEMEEKHIGRDSVTYHTIFFGLMKLNDTE 394

Query: 366 EASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLV 425
               L++ M+  + V         ++ +  +    + + FW+YM++          +LLV
Sbjct: 395 GVCDLYHRMISRDFVPKTRTVVMLMKFFCVNSRLDLGLAFWQYMLDKGYCPHGHALDLLV 454

Query: 426 AGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQIL 463
            GLC    L EA + +K   E+G++++      L++ L
Sbjct: 455 TGLCSRGRLLEAYECSKQFVERGMRMSEVVYRMLERSL 492


>gi|356560073|ref|XP_003548320.1| PREDICTED: pentatricopeptide repeat-containing protein At1g73400,
           mitochondrial-like [Glycine max]
          Length = 466

 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 98/407 (24%), Positives = 178/407 (43%), Gaps = 13/407 (3%)

Query: 54  VEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLG- 112
           +E  L +  I +S   V  VL         A++FF W+ +Q +  H P A+N ++D+L  
Sbjct: 10  MEKALGQLGIPLSTPLVTGVLHRLRYDEKIALRFFTWAGHQEDYSHEPCAYNDMMDILSS 69

Query: 113 ---KNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKH- 168
              K   F  + D ++ MK+ N  ++     +       ++    +  F    +   K  
Sbjct: 70  TRYKVKQFRIVCDVLEYMKRNNKTTVPVEVLLVILRKYTEKYLTHVQKFARKRRIRVKTQ 129

Query: 169 -DVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTF 227
            ++ A N LL A+C+     DA    + +   +KP+ +TY I + GW + R+     K  
Sbjct: 130 PEINAFNLLLDALCKCCLVEDAETLYKKMRKTVKPNAETYNIFVFGWCRVRNPTRGMKLL 189

Query: 228 GEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCN---PGMTFFKLAF 284
            EMV E+G  PDN  AY++ + T  K    + E V+  + M  +G +   P    + +  
Sbjct: 190 EEMV-ELGHRPDNF-AYNTAIDTYCKA-GMVTEAVDLFEFMRTKGSSISSPTAKTYAIII 246

Query: 285 EECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGA 344
                   +     + G M+   G  PD   Y  +I   C   +   A K L+EM     
Sbjct: 247 VALAQHDRMEECFKLIGHMISS-GCLPDVTTYKEIIEGMCVCGKIDEAYKFLEEMGNKSY 305

Query: 345 FPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIK 404
            PDI TYN   + L   +K  +A  L+  M++   + + +     + ++ + DDP  A +
Sbjct: 306 RPDIVTYNCFLKVLCDNKKSEDALKLYGRMIELNCIPSVQTYNMLISMFFEIDDPDGAFE 365

Query: 405 FWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQV 451
            W+ M    C    +T ++++ GL + + + +A    + +  KGI++
Sbjct: 366 TWQEMDNRGCRPDIDTYSVMIDGLFNCNKVEDACFLLEEVINKGIKL 412


>gi|108711050|gb|ABF98845.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|215693326|dbj|BAG88708.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222625789|gb|EEE59921.1| hypothetical protein OsJ_12549 [Oryza sativa Japonica Group]
          Length = 554

 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 105/427 (24%), Positives = 180/427 (42%), Gaps = 21/427 (4%)

Query: 58  LDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLF 117
           +D   +RV+   V+++L    +    A  FF W   Q    H   +++L+VD+LGK   F
Sbjct: 123 MDCCSVRVTGCLVDKILTRFSNDWVAAFGFFMWVGTQGGYCHCADSYDLMVDILGKFKQF 182

Query: 118 DAMWDAIKSMKK-ENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSL 176
           D MW  I  M +   ++SL T   V      A R  +AI  F  M+++G   D  A+N L
Sbjct: 183 DLMWGLINQMVEVGGLMSLMTMTKVMRRLAGASRWTEAIDAFHKMDRFGVVKDTKAMNVL 242

Query: 177 LSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGW 236
           L  +C++     A    + + G I PD +++  L+ GW K R +  A  T  EM  + G+
Sbjct: 243 LDTLCKERSVKRARGVFQELRGTIPPDENSFNTLVHGWCKARMLKEALDTMEEMK-QHGF 301

Query: 237 DPDNVPAYDSYLITLLKGCDGIYETVNS-LKRMMERGCNPGMTFFKLAFEECLTGQNLRG 295
            P +V  Y S +       D  ++TV + L  M +R C P +  + +           R 
Sbjct: 302 SP-SVVTYTSLVEAYCMEKD--FQTVYALLDEMRKRRCPPNVVTYTILMHALGKAGRTRE 358

Query: 296 AEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILF 355
           A   +  +    G  PD   YN +I +   +     A  +++EM   G  P++ T+N L 
Sbjct: 359 ALDTFDKL-KEDGVAPDASFYNSLIYILGRAGRLEDAYSVVEEMRTTGIAPNVTTFNTLI 417

Query: 356 EFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVY-----MDSDDPYVAIKFWK--Y 408
                  +   A  L  +M         ++C   ++ Y     +     +V I  +   +
Sbjct: 418 SAACDHSQAENALKLLVKM-------EEQSCNPDIKTYTPLLKLCCKRQWVKILLFLVCH 470

Query: 409 MIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARK 468
           M     S    T  LLV+ LC    + ++  + + M  KG          + + L K   
Sbjct: 471 MFRKDISPDFSTYTLLVSWLCRNGKVAQSCLFLEEMVSKGFAPKQETFDLVMEKLEKRNL 530

Query: 469 EAVYEEL 475
           ++VY+++
Sbjct: 531 QSVYKKI 537


>gi|224125496|ref|XP_002319601.1| predicted protein [Populus trichocarpa]
 gi|222857977|gb|EEE95524.1| predicted protein [Populus trichocarpa]
          Length = 460

 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 88/327 (26%), Positives = 146/327 (44%), Gaps = 5/327 (1%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           +L TF ++ S      ++ DA+  FD M + G + DV   +++++ +C+ G T  A Q L
Sbjct: 9   TLVTFNTLLSGLCSKAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLCKMGNTTMALQLL 68

Query: 194 RVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
           + ++ +  KP+   Y  +++   K+R V  A   F EMV E G  PD V  Y S L    
Sbjct: 69  KKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKE-GIPPD-VFTYSSILHGFC 126

Query: 253 KGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD 312
                + E  +  K+M+ER   P    F +  +     + +  A  ++  M  + G  PD
Sbjct: 127 N-LGRVNEATSLFKQMVERNVIPNKVTFTILIDGLCKKRMISEAWLVFETMTEK-GLEPD 184

Query: 313 THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFN 372
            + YN ++  YC  ++   A KL + M   G  P++++YNIL     K  ++ EA GL  
Sbjct: 185 VYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILINGHCKSGRIDEAKGLLA 244

Query: 373 EMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMH 432
           EM       +       +R +     P  A +  K M          T ++++ GLC   
Sbjct: 245 EMSHKSLTPDIFTYSTLMRGFCQVGRPQEAQELLKEMCSYGLLPNLITYSIVLDGLCKHG 304

Query: 433 MLPEAVKYAKGMAEKGIQVTPFALSKL 459
            L EA +  K M E  I+   F  + L
Sbjct: 305 HLDEAFELLKAMQESKIEPNIFIYTIL 331



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 70/279 (25%), Positives = 117/279 (41%), Gaps = 4/279 (1%)

Query: 200 IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIY 259
           ++P   T+  LL G   +  + +A K F EMV ++G +PD V  Y + +  L K  +   
Sbjct: 6   LQPTLVTFNTLLSGLCSKAKIMDAVKLFDEMV-KMGHEPD-VITYSTIINGLCKMGNTTM 63

Query: 260 ETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMM 319
             +  LK+M E+GC P +  +    +     + +  A   +  MV + G  PD   Y+ +
Sbjct: 64  -ALQLLKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMV-KEGIPPDVFTYSSI 121

Query: 320 ISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNEN 379
           +  +C       A  L  +MV     P+  T+ IL + L K R + EA  +F  M +   
Sbjct: 122 LHGFCNLGRVNEATSLFKQMVERNVIPNKVTFTILIDGLCKKRMISEAWLVFETMTEKGL 181

Query: 380 VLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVK 439
             +     A V  Y        A K +  M    C+    + N+L+ G C    + EA  
Sbjct: 182 EPDVYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILINGHCKSGRIDEAKG 241

Query: 440 YAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKK 478
               M+ K +    F  S L +   +  +    +ELLK+
Sbjct: 242 LLAEMSHKSLTPDIFTYSTLMRGFCQVGRPQEAQELLKE 280



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 72/306 (23%), Positives = 126/306 (41%), Gaps = 14/306 (4%)

Query: 125 KSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRD 183
           K M + NV+ +  TF  +         + +A   F+ M + G + DV+  N+L+   C  
Sbjct: 139 KQMVERNVIPNKVTFTILIDGLCKKRMISEAWLVFETMTEKGLEPDVYTYNALVDGYCSR 198

Query: 184 GKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVP 242
            +  +A +   ++D +   P+  +Y IL+ G  K   +  AK    EM       PD + 
Sbjct: 199 SQMDEAQKLFNIMDRKGCAPNVRSYNILINGHCKSGRIDEAKGLLAEMS-HKSLTPD-IF 256

Query: 243 AYDSYLITLLKGCDGI---YETVNSLKRMMERGCNPGMTFFKLAFEE-CLTGQNLRGAEF 298
            Y     TL++G   +    E    LK M   G  P +  + +  +  C  G      E 
Sbjct: 257 TYS----TLMRGFCQVGRPQEAQELLKEMCSYGLLPNLITYSIVLDGLCKHGHLDEAFEL 312

Query: 299 IWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFL 358
           +      +I   P+  +Y ++I   C   +  AA +L   +   G  P + TY ++   L
Sbjct: 313 LKAMQESKI--EPNIFIYTILIEGMCTFGKLEAARELFSNLFVKGIQPTVVTYTVMISGL 370

Query: 359 VKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLS 418
           +KG    EA  LF EM  N  + N       ++ ++ + D   A++  + M+    S  S
Sbjct: 371 LKGGLSNEACELFREMAVNGCLPNSCTYNVIIQGFLRNGDTPNAVRLIEEMVGKGFSADS 430

Query: 419 ETGNLL 424
            T  +L
Sbjct: 431 STFRML 436



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 85/358 (23%), Positives = 150/358 (41%), Gaps = 54/358 (15%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-F 192
           ++  + ++  S      V +A+  F  M + G   DVF  +S+L   C  G+  +A   F
Sbjct: 79  NVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYSSILHGFCNLGRVNEATSLF 138

Query: 193 LRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
            ++V+  + P+  T+ IL++G  K+R ++ A   F E + E G +PD V  Y++ +    
Sbjct: 139 KQMVERNVIPNKVTFTILIDGLCKKRMISEAWLVF-ETMTEKGLEPD-VYTYNALV---- 192

Query: 253 KGCDGI-----YETVNSLKRMMER-GCNPGMTFFKLAFE-ECLTGQNLRGAEFIWGAMVG 305
              DG       +    L  +M+R GC P +  + +     C +G+ +  A+ +   M  
Sbjct: 193 ---DGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILINGHCKSGR-IDEAKGLLAEMSH 248

Query: 306 RIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLW 365
           +    PD   Y+ ++  +C       A +LL EM   G  P++ TY+I+ + L K   L 
Sbjct: 249 K-SLTPDIFTYSTLMRGFCQVGRPQEAQELLKEMCSYGLLPNLITYSIVLDGLCKHGHLD 307

Query: 366 EASGLFNEMVKNE--------NVLNHENCR----AAVR-----VYMDSDDPYV------- 401
           EA  L   M +++         +L    C      A R     +++    P V       
Sbjct: 308 EAFELLKAMQESKIEPNIFIYTILIEGMCTFGKLEAARELFSNLFVKGIQPTVVTYTVMI 367

Query: 402 -----------AIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448
                      A + ++ M  N C   S T N+++ G       P AV+  + M  KG
Sbjct: 368 SGLLKGGLSNEACELFREMAVNGCLPNSCTYNVIIQGFLRNGDTPNAVRLIEEMVGKG 425



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 71/180 (39%), Gaps = 35/180 (19%)

Query: 306 RIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQT--------------- 350
           ++G +P    +N ++S  C   +   A+KL DEMV  G  PD+ T               
Sbjct: 3   KLGLQPTLVTFNTLLSGLCSKAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLCKMGNTT 62

Query: 351 --------------------YNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAV 390
                               YN + + L K R + EA   F+EMVK     +     + +
Sbjct: 63  MALQLLKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYSSIL 122

Query: 391 RVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQ 450
             + +      A   +K M+E +      T  +L+ GLC   M+ EA    + M EKG++
Sbjct: 123 HGFCNLGRVNEATSLFKQMVERNVIPNKVTFTILIDGLCKKRMISEAWLVFETMTEKGLE 182


>gi|414589415|tpg|DAA39986.1| TPA: empty pericarp 2 [Zea mays]
          Length = 455

 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 88/320 (27%), Positives = 137/320 (42%), Gaps = 8/320 (2%)

Query: 39  IKTLCEIIANTPSPT--VEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLN 96
           +  LC ++++   P   +   L     R++      VL+   + P P+++FF ++A    
Sbjct: 53  VGALCRVLSDFRGPRHDLRAALSGFAPRLTPAAAAAVLRRCRNLPVPSLRFFLFAAAMPG 112

Query: 97  DKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAIT 156
             H P +  ++   L    LF  +   +  + + + LS   F  +F +Y  A   +DAI 
Sbjct: 113 FTHLPDSLLILAGSLAGARLFPLLRSLLSDLPR-SALSRDLFPLLFRAYARAGLPEDAIR 171

Query: 157 TFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEK 216
            F  ME++     V  L+SLL  +  +G    A  F R    +      TY IL+ GW  
Sbjct: 172 AFSSMERFCFLPTVADLHSLLFTLSHNGLVEHAEAFFRESPFQFDLSAKTYTILISGWAV 231

Query: 217 ERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMME-RGCNP 275
                 A+K F EM IE G  PD VPAY++ +  L +G D +      LK M   RG  P
Sbjct: 232 VASPVKAQKLFDEM-IERGVQPD-VPAYNALIDALCRGGD-VALAQEQLKDMQRSRGLAP 288

Query: 276 GMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKL 335
               +          ++ R A  +   M  R    P+   YN +I L C   E   A  +
Sbjct: 289 DAATYGPFLRSACASKDARAALRVLDRMRAR-SLTPNVFTYNAVIRLLCELGEVDEAYNI 347

Query: 336 LDEMVYNGAFPDIQTYNILF 355
           L+EM   G  PD+ +YN L 
Sbjct: 348 LNEMATYGEKPDVWSYNTLL 367



 Score = 42.7 bits (99), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 54/134 (40%), Gaps = 1/134 (0%)

Query: 316 YNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
           Y ++IS +        A KL DEM+  G  PD+  YN L + L +G  +  A     +M 
Sbjct: 222 YTILISGWAVVASPVKAQKLFDEMIERGVQPDVPAYNALIDALCRGGDVALAQEQLKDMQ 281

Query: 376 KNENVLNHENCRAA-VRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHML 434
           ++  +          +R    S D   A++    M     +    T N ++  LC++  +
Sbjct: 282 RSRGLAPDAATYGPFLRSACASKDARAALRVLDRMRARSLTPNVFTYNAVIRLLCELGEV 341

Query: 435 PEAVKYAKGMAEKG 448
            EA      MA  G
Sbjct: 342 DEAYNILNEMATYG 355


>gi|21686921|gb|AAK71569.2|AC087852_29 putative reverse transcriptase [Oryza sativa Japonica Group]
          Length = 1833

 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 106/428 (24%), Positives = 181/428 (42%), Gaps = 21/428 (4%)

Query: 57   VLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCL 116
             +D   +RV+   V+++L    +    A  FF W   Q    H   +++L+VD+LGK   
Sbjct: 1401 AMDCCSVRVTGCLVDKILTRFSNDWVAAFGFFMWVGTQGGYCHCADSYDLMVDILGKFKQ 1460

Query: 117  FDAMWDAIKSMKK-ENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNS 175
            FD MW  I  M +   ++SL T   V      A R  +AI  F  M+++G   D  A+N 
Sbjct: 1461 FDLMWGLINQMVEVGGLMSLMTMTKVMRRLAGASRWTEAIDAFHKMDRFGVVKDTKAMNV 1520

Query: 176  LLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVG 235
            LL  +C++     A    + + G I PD +++  L+ GW K R +  A  T  EM  + G
Sbjct: 1521 LLDTLCKERSVKRARGVFQELRGTIPPDENSFNTLVHGWCKARMLKEALDTMEEMK-QHG 1579

Query: 236  WDPDNVPAYDSYLITLLKGCDGIYETVNS-LKRMMERGCNPGMTFFKLAFEECLTGQNLR 294
            + P +V  Y S +       D  ++TV + L  M +R C P +  + +           R
Sbjct: 1580 FSP-SVVTYTSLVEAYCMEKD--FQTVYALLDEMRKRRCPPNVVTYTILMHALGKAGRTR 1636

Query: 295  GAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNIL 354
             A   +  +    G  PD   YN +I +   +     A  +++EM   G  P++ T+N L
Sbjct: 1637 EALDTFDKL-KEDGVAPDASFYNSLIYILGRAGRLEDAYSVVEEMRTTGIAPNVTTFNTL 1695

Query: 355  FEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVY-----MDSDDPYVAIKFWK-- 407
                       +A      +VK E     ++C   ++ Y     +     +V I  +   
Sbjct: 1696 ISAACDHS---QAENALKLLVKME----EQSCNPDIKTYTPLLKLCCKRQWVKILLFLVC 1748

Query: 408  YMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKAR 467
            +M     S    T  LLV+ LC    + ++  + + M  KG          + + L K  
Sbjct: 1749 HMFRKDISPDFSTYTLLVSWLCRNGKVAQSCLFLEEMVSKGFAPKQETFDLVMEKLEKRN 1808

Query: 468  KEAVYEEL 475
             ++VY+++
Sbjct: 1809 LQSVYKKI 1816


>gi|302756537|ref|XP_002961692.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
 gi|300170351|gb|EFJ36952.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
          Length = 1056

 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 94/358 (26%), Positives = 166/358 (46%), Gaps = 20/358 (5%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-F 192
           +L T+ ++ +    +  V+DA+   + M + G   DV   NS+L  +C++ + +DA   F
Sbjct: 472 TLVTYNTLVTGLSKSGMVRDALGLLEFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVF 531

Query: 193 LRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
            R ++   +P+  TY+ L++G  K   +  A +   +MV E+G   + V  Y + +  LL
Sbjct: 532 KRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMV-ELGCRANTV-TYSTVVDGLL 589

Query: 253 KGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD 312
           K    + + V  L++M + GC P    +    +     Q LR A  +   M+   GF P 
Sbjct: 590 K-VGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREML-EAGFHPS 647

Query: 313 THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFN 372
              Y  +    C S     A+++LD M   G  P+  TY+ + + L K  ++ EA G F 
Sbjct: 648 VVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFE 707

Query: 373 EMVKNENVLNHENCRAAVRVYMDS-------DDPYVAIKFWKYMIENHCSDLSETGNLLV 425
           +M ++E V  H    +A+   +D        D+ Y   +F + MI         T ++L+
Sbjct: 708 KMARDEVVAPHVIAYSAL---IDGLCKAGRIDEAY---EFLERMIRAGRIPDVVTFSILI 761

Query: 426 AGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKL-KQILIKARKEAVYEELLKKCKAH 482
            GLCD   +   ++   GMAE+G +   +A + +     +K    A Y  LL++ K H
Sbjct: 762 NGLCDAGRIDTGLELFCGMAERGCKADIYAYNAMINAYCLKGEFSAAY-ALLEEMKTH 818



 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 123/492 (25%), Positives = 185/492 (37%), Gaps = 117/492 (23%)

Query: 95  LNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKK-ENVLSLATFASVFSSYVVADRVKD 153
           L DK+S         LL   C    + +AI+ +K    V ++  F S+ +    A RV +
Sbjct: 269 LRDKNSQAGMFAFSSLLHGLCQAHRLEEAIQLLKAMPCVPNVVCFNSLMNGLCQARRVDE 328

Query: 154 AITTFDVMEQYGCKHDVFALNSLLSAICR------------------------------- 182
           A   FDVM++ GC  DV   N LL  +C+                               
Sbjct: 329 AFELFDVMKESGCSADVITYNILLKGLCKLRRIPEAYRHVELMRRTEGCSPNVVTFSTLI 388

Query: 183 -----DGKTIDAWQF---LRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEV 234
                 G+   AW+    +  V+G I P+  TYA LLEG  K  D    ++ F E ++E 
Sbjct: 389 QGLCNAGRVNQAWEVYERMVAVEG-ISPNRFTYAFLLEGLCKAGDSRRLEQCF-EQMLER 446

Query: 235 GWD-----PDNVPAYD--------------SYLITLLKGCDGIYETVNSLKRMMERGCNP 275
            W      P + P  D              + L+T L     + + +  L+ M+E G +P
Sbjct: 447 EWRSSSSWPIHSPEVDFLMVQVCRPTLVTYNTLVTGLSKSGMVRDALGLLEFMIESGLSP 506

Query: 276 GMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNM----------------- 318
            +  F    +     Q +  A  ++   + R G RP+   Y+                  
Sbjct: 507 DVITFNSVLDGLCKEQRILDAHNVFKRALER-GCRPNVVTYSTLIDGLSKMAKMDEALQL 565

Query: 319 ---MISLYCYSNETG---------------AAMKLLDEMVYNGAFPDIQTYNILFEFLVK 360
              M+ L C +N                   A+ +L +M   G  PD  TYN L +   K
Sbjct: 566 LAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFK 625

Query: 361 GRKLWEASGLFNEM--------VKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIEN 412
            ++L EA GL  EM        V     L H  CR+      D      A++   YM   
Sbjct: 626 RQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSG---RFDE-----AVEILDYMAAR 677

Query: 413 HCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTP--FALSKLKQILIKA-RKE 469
            C+  + T + +V GLC    + EA+ Y + MA   + V P   A S L   L KA R +
Sbjct: 678 GCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEV-VAPHVIAYSALIDGLCKAGRID 736

Query: 470 AVYEELLKKCKA 481
             YE L +  +A
Sbjct: 737 EAYEFLERMIRA 748



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 103/412 (25%), Positives = 163/412 (39%), Gaps = 42/412 (10%)

Query: 94  QLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLA-TFASVFSSYVVADRVK 152
           +L  + +   ++ VVD L K    +     ++ M+    L  A T+ ++   +    R++
Sbjct: 571 ELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLR 630

Query: 153 DAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILL 211
           +A+     M + G    V    +L   +CR G+  +A + L  +  R   P+  TY+ ++
Sbjct: 631 EAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIV 690

Query: 212 EGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMER 271
           +G  K   V  A   F +M  +    P +V AY + +  L K    I E    L+RM+  
Sbjct: 691 DGLCKAGRVTEALGYFEKMARDEVVAP-HVIAYSALIDGLCKA-GRIDEAYEFLERMIRA 748

Query: 272 GCNPGMTFFKLAFEE-CLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETG 330
           G  P +  F +     C  G+   G E   G M  R G + D + YN MI+ YC   E  
Sbjct: 749 GRIPDVVTFSILINGLCDAGRIDTGLELFCG-MAER-GCKADIYAYNAMINAYCLKGEFS 806

Query: 331 AAMKLLDEMVYNG-----------------------------AFP----DIQTYNILFEF 357
           AA  LL+EM  +G                             + P    D  +YN L   
Sbjct: 807 AAYALLEEMKTHGIAKNTVTHGIVIKALCGNDRIDEAVSYFHSIPEDCRDEISYNTLITS 866

Query: 358 LVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYM-IENHCSD 416
           LV  R+  +A  L   MV +    +  N    +     +  P VA K  + M    H  D
Sbjct: 867 LVASRRSEQALELLRAMVADGGSPDACNYMTVMDGLFKAGSPEVAAKLLQEMRSRGHSPD 926

Query: 417 LSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARK 468
           L  T  ++++GL     LP A  Y + M  K ++      S L     KA K
Sbjct: 927 L-RTYTIMISGLSKAKQLPLACDYFEEMLRKNLKPDAIVYSSLIDAFCKADK 977



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 93/407 (22%), Positives = 167/407 (41%), Gaps = 56/407 (13%)

Query: 104 WNLVVDLL---GKNC-LFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFD 159
           +N++++ L   G+ C  F A   AI+   +  V+   T+++V       + V       +
Sbjct: 4   YNVLINGLCKAGRVCDAFTAFRKAIQFGFRPTVV---TYSTVIDGLCRDNEVDKGCKLLE 60

Query: 160 VMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKER 218
            M   GC  +    N+L++A+   G+  +A+  L R+      P+  T+ ++++G  KE 
Sbjct: 61  EMAGRGCAPNAVTYNTLVNALLGQGRAKEAFSLLERMAANGCPPELITFGLIIKGLCKEG 120

Query: 219 DVANAKKTFGEM----------------------------------VIEVGWDPDNVPAY 244
           ++  A +   EM                                  V+ +G+ PD V  Y
Sbjct: 121 EIEAAFRVVDEMVDRGFVPDVEIHTVLLHALCELGRVDEAWFFFQQVLLIGFTPDAV-TY 179

Query: 245 DSYLITLLKGCDGIYETVN-SLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAM 303
           ++ +  L K   G  E     L+ + E   +P +  F +A +      NL GA   + +M
Sbjct: 180 NTMVDGLYKA--GRLEAAGMVLQLLAESFSSPTVFTFTIAVDGLSKAGNLTGAYEFFDSM 237

Query: 304 VGRIGFRPDTHMYNMMISLYCYSNETGAAMKLL-DEMVYNGAFPDIQTYNILFEFLVKGR 362
             + G  P+T  Y+ +I   C + +   A+ LL D+    G F     ++ L   L +  
Sbjct: 238 -PQTGVSPNTVTYDALIDGLCKAGKLDIALGLLRDKNSQAGMF----AFSSLLHGLCQAH 292

Query: 363 KLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGN 422
           +L EA  L   M    NV+   +    +      D+   A + +  M E+ CS    T N
Sbjct: 293 RLEEAIQLLKAMPCVPNVVCFNSLMNGLCQARRVDE---AFELFDVMKESGCSADVITYN 349

Query: 423 LLVAGLCDMHMLPEAVKYAKGMAE-KGIQVTPFALSKLKQILIKARK 468
           +L+ GLC +  +PEA ++ + M   +G        S L Q L  A +
Sbjct: 350 ILLKGLCKLRRIPEAYRHVELMRRTEGCSPNVVTFSTLIQGLCNAGR 396



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 82/347 (23%), Positives = 133/347 (38%), Gaps = 49/347 (14%)

Query: 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR 194
           + T+  + +    A RV DA T F    Q+G +  V   ++++  +CRD +     + L 
Sbjct: 1   MVTYNVLINGLCKAGRVCDAFTAFRKAIQFGFRPTVVTYSTVIDGLCRDNEVDKGCKLLE 60

Query: 195 VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG 254
            + GR                                   G  P+ V  Y++ L+  L G
Sbjct: 61  EMAGR-----------------------------------GCAPNAV-TYNT-LVNALLG 83

Query: 255 CDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTH 314
                E  + L+RM   GC P +  F L  +       +  A  +   MV R GF PD  
Sbjct: 84  QGRAKEAFSLLERMAANGCPPELITFGLIIKGLCKEGEIEAAFRVVDEMVDR-GFVPDVE 142

Query: 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASG----L 370
           ++ +++   C       A     +++  G  PD  TYN + + L K  +L EA+G    L
Sbjct: 143 IHTVLLHALCELGRVDEAWFFFQQVLLIGFTPDAVTYNTMVDGLYKAGRL-EAAGMVLQL 201

Query: 371 FNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCD 430
             E   +  V        AV     + +   A +F+  M +   S  + T + L+ GLC 
Sbjct: 202 LAESFSSPTVFTFT---IAVDGLSKAGNLTGAYEFFDSMPQTGVSPNTVTYDALIDGLCK 258

Query: 431 MHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLK 477
              L  A+   +   +K  Q   FA S L   L +A +     +LLK
Sbjct: 259 AGKLDIALGLLR---DKNSQAGMFAFSSLLHGLCQAHRLEEAIQLLK 302


>gi|357151708|ref|XP_003575878.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g19890-like [Brachypodium distachyon]
          Length = 676

 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 87/315 (27%), Positives = 146/315 (46%), Gaps = 15/315 (4%)

Query: 151 VKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVV-DGRIKPDNDTYA 208
           VK A    + M   G K +V+   SL++ +C+ G T  A++ FL+++     KP+  TY 
Sbjct: 271 VKQAFYVLEEMVAKGLKPNVYTHTSLINGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYT 330

Query: 209 ILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC-DGIYETVNSLKR 267
           +++ G+ KE  +A A+   G MV E G  P+     ++Y   +   C +G +     L  
Sbjct: 331 VMIGGYCKEGKLARAEMLLGRMV-EQGLAPNT----NTYTTLISGHCKEGSFNCAFELMN 385

Query: 268 MMER-GCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCY 325
            M R G  P + T+  L    C  G+     + +   M    G + D   Y +MI+ +C 
Sbjct: 386 KMRREGFQPNIYTYNALIDGLCKKGKIQEAYKVLR--MANNQGLQLDKVTYTVMITEHCK 443

Query: 326 SNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHEN 385
                 A+ L + M  NG  PDI TY  L     + R++ E+  LF++ +  E V   + 
Sbjct: 444 QGHITYALDLFNRMAENGCHPDIHTYTTLIARYCQQRQMEESQKLFDKCLAIELVPTKQT 503

Query: 386 CRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMA 445
             + +  Y        A++ ++ M++N C   S T   L++GLC    L EA    +GM 
Sbjct: 504 YTSMIAGYCKVGKSTSALRVFERMVQNGCQADSITYGALISGLCKESRLEEARALYEGML 563

Query: 446 EKGI---QVTPFALS 457
           +K +   +VTP  L+
Sbjct: 564 DKRLVPCEVTPVTLA 578



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 55/240 (22%), Positives = 100/240 (41%), Gaps = 40/240 (16%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           T+ ++ S +        A    + M + G + +++  N+L+  +C+ GK  +A++ LR+ 
Sbjct: 363 TYTTLISGHCKEGSFNCAFELMNKMRREGFQPNIYTYNALIDGLCKKGKIQEAYKVLRMA 422

Query: 197 DGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
           + + ++ D  TY +++    K+  +  A   F  M  E G  PD      +Y   + + C
Sbjct: 423 NNQGLQLDKVTYTVMITEHCKQGHITYALDLFNRMA-ENGCHPD----IHTYTTLIARYC 477

Query: 256 DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHM 315
                     +R ME          +  F++CL                  I   P    
Sbjct: 478 Q---------QRQMEES--------QKLFDKCLA-----------------IELVPTKQT 503

Query: 316 YNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
           Y  MI+ YC   ++ +A+++ + MV NG   D  TY  L   L K  +L EA  L+  M+
Sbjct: 504 YTSMIAGYCKVGKSTSALRVFERMVQNGCQADSITYGALISGLCKESRLEEARALYEGML 563



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 82/343 (23%), Positives = 136/343 (39%), Gaps = 66/343 (19%)

Query: 144 SYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKP 202
           S+  A +V D + T     + G   D  +  +L+   CRDG+  +    L V+ G+    
Sbjct: 164 SFAYARKVFDGMVT-----RGGLLPDARSFRALIVGCCRDGRMEEVDALLTVMQGQGFCL 218

Query: 203 DNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETV 262
           DN T  +++  + ++    +  + F  M +E+G  P NV  Y +++  L K    + +  
Sbjct: 219 DNATCTVIVRVFCQKGRFRDVSELFRRM-LEMG-TPPNVVNYTAWIDGLCKRAY-VKQAF 275

Query: 263 NSLKRMMERGCNPGM---------------------TFFKLAFEE--------------- 286
             L+ M+ +G  P +                      F KL                   
Sbjct: 276 YVLEEMVAKGLKPNVYTHTSLINGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGG 335

Query: 287 -CLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAF 345
            C  G+  R AE + G MV + G  P+T+ Y  +IS +C       A +L+++M   G  
Sbjct: 336 YCKEGKLAR-AEMLLGRMVEQ-GLAPNTNTYTTLISGHCKEGSFNCAFELMNKMRREGFQ 393

Query: 346 PDIQTYNILFEFLVKGRKLWEASGLFNEMVKNE---------NVLNHENCRAAVRVYMDS 396
           P+I TYN L + L K  K+ EA  +   M  N+          V+  E+C+     Y   
Sbjct: 394 PNIYTYNALIDGLCKKGKIQEAYKVL-RMANNQGLQLDKVTYTVMITEHCKQGHITY--- 449

Query: 397 DDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVK 439
                A+  +  M EN C     T   L+A  C    + E+ K
Sbjct: 450 -----ALDLFNRMAENGCHPDIHTYTTLIARYCQQRQMEESQK 487



 Score = 38.1 bits (87), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 62/253 (24%), Positives = 96/253 (37%), Gaps = 12/253 (4%)

Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC--DGIYETVNSLKRMME-RG-CNPG 276
           A A+K F  MV   G  PD           L+ GC  DG  E V++L  +M+ +G C   
Sbjct: 166 AYARKVFDGMVTRGGLLPDA-----RSFRALIVGCCRDGRMEEVDALLTVMQGQGFCLDN 220

Query: 277 MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLL 336
            T   +    C  G+  R    ++  M+  +G  P+   Y   I   C       A  +L
Sbjct: 221 ATCTVIVRVFCQKGR-FRDVSELFRRML-EMGTPPNVVNYTAWIDGLCKRAYVKQAFYVL 278

Query: 337 DEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVL-NHENCRAAVRVYMD 395
           +EMV  G  P++ T+  L   L K      A  LF +++K+ +   N       +  Y  
Sbjct: 279 EEMVAKGLKPNVYTHTSLINGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCK 338

Query: 396 SDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFA 455
                 A      M+E   +  + T   L++G C       A +    M  +G Q   + 
Sbjct: 339 EGKLARAEMLLGRMVEQGLAPNTNTYTTLISGHCKEGSFNCAFELMNKMRREGFQPNIYT 398

Query: 456 LSKLKQILIKARK 468
            + L   L K  K
Sbjct: 399 YNALIDGLCKKGK 411


>gi|218193742|gb|EEC76169.1| hypothetical protein OsI_13484 [Oryza sativa Indica Group]
          Length = 1874

 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 106/428 (24%), Positives = 181/428 (42%), Gaps = 21/428 (4%)

Query: 57   VLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCL 116
             +D   +RV+   V+++L    +    A  FF W   Q    H   +++L+VD+LGK   
Sbjct: 1442 AMDCCSVRVTGCLVDKILTRFSNDWVAAFGFFMWVGTQGGYCHCADSYDLMVDILGKFKQ 1501

Query: 117  FDAMWDAIKSMKK-ENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNS 175
            FD MW  I  M +   ++SL T   V      A R  +AI  F  M+++G   D  A+N 
Sbjct: 1502 FDLMWGLINQMVEVGGLMSLMTMTKVMRRLAGASRWTEAIDAFHKMDRFGVVKDTKAMNV 1561

Query: 176  LLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVG 235
            LL  +C++     A    + + G I PD +++  L+ GW K R +  A  T  EM  + G
Sbjct: 1562 LLDTLCKERSVKRARGVFQELRGTIPPDENSFNTLVHGWCKARMLKEALDTMEEMK-QHG 1620

Query: 236  WDPDNVPAYDSYLITLLKGCDGIYETVNS-LKRMMERGCNPGMTFFKLAFEECLTGQNLR 294
            + P +V  Y S +       D  ++TV + L  M +R C P +  + +           R
Sbjct: 1621 FSP-SVVTYTSLVEAYCMEKD--FQTVYALLDEMRKRRCPPNVVTYTILMHALGKAGRTR 1677

Query: 295  GAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNIL 354
             A   +  +    G  PD   YN +I +   +     A  +++EM   G  P++ T+N L
Sbjct: 1678 EALDTFDKL-KEDGVAPDASFYNSLIYILGRAGRLEDAYSVVEEMRTTGIAPNVTTFNTL 1736

Query: 355  FEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVY-----MDSDDPYVAIKFWK-- 407
                       +A      +VK E     ++C   ++ Y     +     +V I  +   
Sbjct: 1737 ISAACDHS---QAENALKLLVKME----EQSCNPDIKTYTPLLKLCCKRQWVKILLFLVC 1789

Query: 408  YMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKAR 467
            +M     S    T  LLV+ LC    + ++  + + M  KG          + + L K  
Sbjct: 1790 HMFRKDISPDFSTYTLLVSWLCRNGKVAQSCLFLEEMVSKGFAPKQETFDLVMEKLEKRN 1849

Query: 468  KEAVYEEL 475
             ++VY+++
Sbjct: 1850 LQSVYKKI 1857


>gi|357134597|ref|XP_003568903.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15200-like [Brachypodium distachyon]
          Length = 537

 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 97/413 (23%), Positives = 179/413 (43%), Gaps = 10/413 (2%)

Query: 65  VSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLG---KNCLFDAMW 121
           + ++ V +VL+   S+   A+ FF W+A      H P  +  ++D+LG   K  L   ++
Sbjct: 110 MDEDVVLRVLQKQRSNWQVALLFFNWAAGLPAYAHGPRTYTEMLDILGRMKKVKLMTQLF 169

Query: 122 DAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAIC 181
           D I   ++  V++  TFA + + Y  A +V++AI  F   + YG + D+     LL ++C
Sbjct: 170 DEIPEERRGLVVTNRTFAVLLNRYAGAHKVQEAIEMFYKRKDYGFEVDLVGFQILLMSLC 229

Query: 182 RDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNV 241
           R     +A            P   ++ I+L GW  +  + +AK+ + + +I     PD +
Sbjct: 230 RYKHVEEAEALFLQKKDEFPPVIKSWNIILNGWCVKGSLPDAKRIWNQ-IIASKLKPD-L 287

Query: 242 PAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWG 301
             Y +++ +L K    +   V     M E+G NP +       ++    + +  A  I+ 
Sbjct: 288 FTYGTFINSLTKA-GKLSTAVKLFTSMWEKGINPDVAICNCIIDQLCFKKKIPEALDIFR 346

Query: 302 AMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKG 361
            M  R G + D   YN +I  +C    T    +LLD+M   G  P+  TY+ + +   K 
Sbjct: 347 EMTDR-GCQADVATYNTLIKYFCKIRRTEKVYELLDDMENKGCSPNNMTYSYILKTTEKP 405

Query: 362 RKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETG 421
           +   +   L   M K+   L+ +     + +Y+         + W  M  N       + 
Sbjct: 406 K---DVIHLLQRMEKSGCRLDSDTYNLILNLYVSMKYENGVQQVWDEMERNGSGPDQRSF 462

Query: 422 NLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEE 474
            ++V GL     L +A++Y   M  +G+   P     +K I +K    AV ++
Sbjct: 463 TIMVHGLHSQGRLDQALQYYTTMKSRGMTPEPRTRILVKAIHMKKDGPAVEDQ 515


>gi|116793367|gb|ABK26722.1| unknown [Picea sitchensis]
          Length = 198

 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 97/163 (59%), Gaps = 2/163 (1%)

Query: 38  TIKTLCEIIANTPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPG-PAVKFFRWSAYQLN 96
           ++K +C+I+ ++P+  V +VL K+ +  S + VE+VL   + + G  A +FF W+  Q +
Sbjct: 36  SLKKICKILTSSPTADVSEVLQKSKVEASPKLVEEVL-MRFENAGMQAYRFFEWAGKQQD 94

Query: 97  DKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAIT 156
             HS  A+++++D LGK   +  MW  +  MK + VL+  TFA +   Y  A ++++A+ 
Sbjct: 95  YAHSVEAYHIIIDSLGKIQQYGLMWTVVNLMKIKGVLTKETFAIIMRRYARAKKIEEAVY 154

Query: 157 TFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR 199
           TFD ME++G   D+ A NSLLSA+C+  K   A +   ++  R
Sbjct: 155 TFDTMEKFGVLPDLEAFNSLLSALCKCKKVRKAQEVFDLMKVR 197


>gi|147810269|emb|CAN75824.1| hypothetical protein VITISV_004157 [Vitis vinifera]
          Length = 1512

 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 99/372 (26%), Positives = 161/372 (43%), Gaps = 6/372 (1%)

Query: 96   NDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDA 154
            N K   + + +++D L K+ +     D    M    +L  +  ++S+        R+K+A
Sbjct: 1080 NCKGDVFTYGMIIDALCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEA 1139

Query: 155  ITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRV-VDGRIKPDNDTYAILLEG 213
            +  F  ME  G   DV+  NSL+  + R G   +   FL + VD    PD  T+ IL++G
Sbjct: 1140 LEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDG 1199

Query: 214  WEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGC 273
              KE  V  A++   E++   G +PD +  Y++ L+  L     + +     + + +RG 
Sbjct: 1200 LCKEGKVGEAQQIL-ELMRHKGKEPD-ILTYNT-LMNGLCLVGQLEDATKLFESLADRGI 1256

Query: 274  NPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAM 333
               +  + +        Q +  A   +  M  + G +P T  YN +I   C S     A 
Sbjct: 1257 KLNVFSYNILINGYCKDQKIDEAFRFFEEMRPK-GLKPSTVTYNTLIGALCQSGRVRTAQ 1315

Query: 334  KLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVY 393
            KL  EM   G F  + TY +L + L K   L EA  LF  + K E+  N E     +   
Sbjct: 1316 KLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAMDLFQSIKKTEHKPNIEVFSILLDGM 1375

Query: 394  MDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTP 453
              +     A K +  + +N     +   N+L+ GLC+  ML EAVK    M EKG     
Sbjct: 1376 CRAGKLEEAWKQFDEISKNGLEPDTIAYNILINGLCNKGMLSEAVKLLWQMEEKGCLPDS 1435

Query: 454  FALSKLKQILIK 465
               + + Q L+K
Sbjct: 1436 ITFNVIIQNLLK 1447



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 79/308 (25%), Positives = 126/308 (40%), Gaps = 12/308 (3%)

Query: 136  ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRV 195
             T  ++     + + + DA+  FD M + G   D      L++ +C+  KT  A +    
Sbjct: 1017 VTVTTLVKGVWMENGIPDAVQLFDEMTKKGLLGDAKTYGILINGLCKARKTGLAIKLHEK 1076

Query: 196  VDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
            + G  K D  TY ++++   K+     A   F EM I  G  PD V  Y S +  L +  
Sbjct: 1077 MKGNCKGDVFTYGMIIDALCKDGMTTEALDMFSEM-IGAGILPD-VVVYSSLMDGLCR-F 1133

Query: 256  DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRG--AEFIW--GAMVGRIGFRP 311
              + E +   K M  RG +  +      +   + G +  G   E  W    MV R GF P
Sbjct: 1134 GRLKEALEFFKEMEGRGISADV----YTYNSLIHGLSRAGLWKEVTWFLNLMVDR-GFSP 1188

Query: 312  DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLF 371
            D   + ++I   C   + G A ++L+ M + G  PDI TYN L   L    +L +A+ LF
Sbjct: 1189 DAFTFTILIDGLCKEGKVGEAQQILELMRHKGKEPDILTYNTLMNGLCLVGQLEDATKLF 1248

Query: 372  NEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDM 431
              +      LN  +    +  Y        A +F++ M        + T N L+  LC  
Sbjct: 1249 ESLADRGIKLNVFSYNILINGYCKDQKIDEAFRFFEEMRPKGLKPSTVTYNTLIGALCQS 1308

Query: 432  HMLPEAVK 439
              +  A K
Sbjct: 1309 GRVRTAQK 1316



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 63/251 (25%), Positives = 115/251 (45%), Gaps = 16/251 (6%)

Query: 135  LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR 194
            + T+ ++ +   +  +++DA   F+ +   G K +VF+ N L++  C+D K  +A++F  
Sbjct: 1225 ILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAFRFFE 1284

Query: 195  VVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLK 253
             +  + +KP   TY  L+    +   V  A+K F EM               +Y + L  
Sbjct: 1285 EMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEM-----QTCGQFLKLSTYCVLLDG 1339

Query: 254  GCDG--IYETVNSLKRMMERGCNPGMTFFKLAFEE-CLTGQNLRGAEFIWGAM--VGRIG 308
             C    + E ++  + + +    P +  F +  +  C  G+     E  W     + + G
Sbjct: 1340 LCKNGHLEEAMDLFQSIKKTEHKPNIEVFSILLDGMCRAGK----LEEAWKQFDEISKNG 1395

Query: 309  FRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEAS 368
              PDT  YN++I+  C       A+KLL +M   G  PD  T+N++ + L+K  ++ EA 
Sbjct: 1396 LEPDTIAYNILINGLCNKGMLSEAVKLLWQMEEKGCLPDSITFNVIIQNLLKENEIHEAI 1455

Query: 369  GLFNEMVKNEN 379
             L  EM +N N
Sbjct: 1456 QLLEEM-RNRN 1465



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 58/262 (22%), Positives = 113/262 (43%), Gaps = 45/262 (17%)

Query: 98   KHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAIT 156
            K + +++N++++   K+   D  +   + M+ + +  S  T+ ++  +   + RV+ A  
Sbjct: 1257 KLNVFSYNILINGYCKDQKIDEAFRFFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQK 1316

Query: 157  TFDVMEQYGCKHDVFALNSLLSAICRDG---KTIDAWQFLRVVDGRIKPDNDTYAILLEG 213
             F  M+  G    +     LL  +C++G   + +D +Q ++  +   KP+ + ++ILL+G
Sbjct: 1317 LFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAMDLFQSIKKTEH--KPNIEVFSILLDG 1374

Query: 214  WEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGC 273
              +   +  A K F E + + G +PD + AY+  LI  L     + E V  L +M E+GC
Sbjct: 1375 MCRAGKLEEAWKQFDE-ISKNGLEPDTI-AYN-ILINGLCNKGMLSEAVKLLWQMEEKGC 1431

Query: 274  NPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAM 333
                                                 PD+  +N++I      NE   A+
Sbjct: 1432 ------------------------------------LPDSITFNVIIQNLLKENEIHEAI 1455

Query: 334  KLLDEMVYNGAFPDIQTYNILF 355
            +LL+EM      PD    ++L 
Sbjct: 1456 QLLEEMRNRNFSPDEAVTSMLL 1477



 Score = 47.8 bits (112), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 63/166 (37%), Gaps = 15/166 (9%)

Query: 308  GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEA 367
            GF PD      ++      N    A++L DEM   G   D +TY IL   L K RK   A
Sbjct: 1011 GFEPDAVTVTTLVKGVWMENGIPDAVQLFDEMTKKGLLGDAKTYGILINGLCKARKTGLA 1070

Query: 368  SGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYV-------AIKFWKYMIENHCSDLSET 420
              L  +M          NC+  V  Y    D          A+  +  MI          
Sbjct: 1071 IKLHEKM--------KGNCKGDVFTYGMIIDALCKDGMTTEALDMFSEMIGAGILPDVVV 1122

Query: 421  GNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKA 466
             + L+ GLC    L EA+++ K M  +GI    +  + L   L +A
Sbjct: 1123 YSSLMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRA 1168


>gi|449437378|ref|XP_004136469.1| PREDICTED: pentatricopeptide repeat-containing protein At5g11310,
           mitochondrial-like [Cucumis sativus]
 gi|449503560|ref|XP_004162063.1| PREDICTED: pentatricopeptide repeat-containing protein At5g11310,
           mitochondrial-like [Cucumis sativus]
          Length = 615

 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 108/464 (23%), Positives = 192/464 (41%), Gaps = 36/464 (7%)

Query: 11  DDPS-PDPHNKRKRSTFASHLDV-------PNLPPTIKTLCEIIANTPSPTVEDVLDKTL 62
           D P+ P P N    S   S +DV       PN   TI ++    +  P   +ED LD+T 
Sbjct: 56  DQPANPLPSNSAVISNPNSAIDVKFEASYSPNDLSTISSILSDRSVRPGAALEDALDRTG 115

Query: 63  IRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWD 122
           I  S   +E V     S P      F W+A +   + S   +N ++++L K+  FD+ W 
Sbjct: 116 IVPSSSLLEAVFDHFDSSPKFLHSLFLWAAKKSGFRPSAALFNRLINVLAKSREFDSAWS 175

Query: 123 AIKSM----KKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFA------ 172
            I S     ++  ++S+  F  +   Y  A  V+ AI T+    ++ C  +  +      
Sbjct: 176 LITSRLRGGEESFLVSVEVFVILIRRYARAGMVQPAIRTY----EFACNLETISGTGSEG 231

Query: 173 -LNSLLSAICRDGKTIDAWQFL---RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFG 228
               LL ++C++G    A ++    R +    +P    Y IL+ GW + R + +A++ + 
Sbjct: 232 LFEILLDSLCKEGHVRVASEYFNRKREMGSSFEPSIRAYNILINGWFRSRKLKHAQRLWF 291

Query: 229 EMVIEVGWDPDNVPAYDSYL--ITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEE 286
           EM  +       V  Y + +     ++  +   E V+ ++R    G  P    +    + 
Sbjct: 292 EM--KKNKISPTVVTYGTLIEGYCRMRSVEIAIELVDEMRR---EGIEPNAIVYNPIVDA 346

Query: 287 CLTGQNLRGA-EFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAF 345
                  + A   +   MV   G  P    YN ++  YC + +   A K+L  M+  G  
Sbjct: 347 LGEAGRFKEALGMMERFMVLEQG--PTISTYNSLVKGYCKAGDLSGASKILKMMIGRGFT 404

Query: 346 PDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKF 405
           P   TYN  F F  K  K+ E+  L+N+M+++    +       +++  + +   +A++ 
Sbjct: 405 PTPTTYNYFFRFFSKYGKIEESMSLYNKMIESGYAPDKLTYHLLLKMLCEEERLNLAVQV 464

Query: 406 WKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
              M          T  +L+  LC MH   EA    + M  +GI
Sbjct: 465 CNEMKARGFDMDLATSTMLMHLLCKMHKFEEAFAEFEHMIHRGI 508


>gi|226497014|ref|NP_001152455.1| GTP binding protein [Zea mays]
 gi|195656487|gb|ACG47711.1| GTP binding protein [Zea mays]
          Length = 455

 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 87/320 (27%), Positives = 137/320 (42%), Gaps = 8/320 (2%)

Query: 39  IKTLCEIIANTPSPT--VEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLN 96
           +  LC ++++   P   +   L     R++      VL+   + P P+++FF ++A    
Sbjct: 53  VGALCRVLSDFRGPRHDLRAALSGFAPRLTPAAAAAVLRRCRNLPVPSLRFFLFAAAMPG 112

Query: 97  DKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAIT 156
             H P +  ++   L    LF  +   +  + + + LS   F  +F +Y  A   +DAI 
Sbjct: 113 FTHLPDSLLILAGSLAGTRLFPLLRSLLSDLPR-SALSRDLFPLLFRAYARAGLPEDAIR 171

Query: 157 TFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEK 216
            F  ME++     V  L+SLL  +  +G    A  F R    +      TY IL+ GW  
Sbjct: 172 AFSSMERFCFLPTVADLHSLLFTLSHNGLVEHAEAFFRESPFQFDLSAKTYTILISGWAV 231

Query: 217 ERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMME-RGCNP 275
                 A+K F EM IE G  PD VPAY++ +  L +G D +      LK M   RG  P
Sbjct: 232 VASPVKAQKLFDEM-IERGVQPD-VPAYNALIDALCRGGD-VALAQEQLKDMQRSRGLAP 288

Query: 276 GMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKL 335
               +          ++ R A  +   M  R    P+   YN +I L C   E   +  +
Sbjct: 289 DAATYGPFLRSACASKDARAALRVLDRMRAR-SLTPNVFTYNAVIRLLCELGEVDESYNI 347

Query: 336 LDEMVYNGAFPDIQTYNILF 355
           L+EM   G  PD+ +YN L 
Sbjct: 348 LNEMATYGEKPDVWSYNTLL 367



 Score = 41.2 bits (95), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 32/134 (23%), Positives = 54/134 (40%), Gaps = 1/134 (0%)

Query: 316 YNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
           Y ++IS +        A KL DEM+  G  PD+  YN L + L +G  +  A     +M 
Sbjct: 222 YTILISGWAVVASPVKAQKLFDEMIERGVQPDVPAYNALIDALCRGGDVALAQEQLKDMQ 281

Query: 376 KNENVLNHENCRAA-VRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHML 434
           ++  +          +R    S D   A++    M     +    T N ++  LC++  +
Sbjct: 282 RSRGLAPDAATYGPFLRSACASKDARAALRVLDRMRARSLTPNVFTYNAVIRLLCELGEV 341

Query: 435 PEAVKYAKGMAEKG 448
            E+      MA  G
Sbjct: 342 DESYNILNEMATYG 355


>gi|297835244|ref|XP_002885504.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331344|gb|EFH61763.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 618

 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 90/338 (26%), Positives = 156/338 (46%), Gaps = 22/338 (6%)

Query: 121 WDAIKSMKKENV-LSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSA 179
            D  + M++ ++  S+  ++ V  S      + DA++ F+ ME  G K DV A +S++  
Sbjct: 229 LDLFRKMEERSIKASVVQYSIVIDSLCKDGNLDDALSLFNEMEMKGIKADVVAYSSIIGG 288

Query: 180 ICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDP 238
           +C DG+  D  + LR + GR I P+  T++ L++ + KE  +  AK+ + EMV   G  P
Sbjct: 289 LCNDGRWDDGAKMLREMIGRNIIPNVVTFSALIDVFVKEGKLLEAKELYNEMVAR-GIAP 347

Query: 239 DNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEF 298
           D +  Y S +    K  + + E    L  M+ +GC P +  + +        + +     
Sbjct: 348 DTI-TYSSLIDGFCKE-NRLGEANQMLDLMVSKGCEPNIVTYSILINSYCKAKRVDNGMR 405

Query: 299 IWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFL 358
           ++  +  + G   DT  YN ++  +C S +   A +L  EMV  G  P + TY IL + L
Sbjct: 406 LFCEISSK-GLVADTVTYNTLVQGFCQSGKLNVAKELFQEMVSRGVPPSVVTYGILLDGL 464

Query: 359 VKGRKLWEASGLFNEMVKNE--------NVLNHENCRAAVRVYMDSDDPYVAIKFWKYMI 410
               +L +A  +F +M K+         N++ H  C A+       DD +    F    +
Sbjct: 465 CDNGELQKALEIFEKMQKSRMILGIGIYNIIIHGMCNAS-----KVDDAWSL--FCSLSV 517

Query: 411 ENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448
           +    D+  T N+++ GLC    L EA    + M E G
Sbjct: 518 KGVKPDVL-TYNVMIGGLCKKGSLSEADMLFRKMKEDG 554



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 99/375 (26%), Positives = 171/375 (45%), Gaps = 18/375 (4%)

Query: 74  LKFSYSHPGPAVKF-FRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMK-KEN 131
           L F++S  G A+KF F  +    +   + +       L G+     A+ D +  MK + N
Sbjct: 120 LLFAFSVVGRALKFGFEPNTITFSTLINGFC------LEGRVSEAVALVDRMVEMKYRPN 173

Query: 132 VLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ 191
           V+++ T     +   +  RV +A+   D M +YGC+ +      +L+ +C+ G T  A  
Sbjct: 174 VVTVNTL---INGLCLKGRVTEALVLIDRMVKYGCEANEITYGPVLNRMCKSGNTALALD 230

Query: 192 FLRVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLIT 250
             R ++ R IK     Y+I+++   K+ ++ +A   F EM  E+     +V AY S +  
Sbjct: 231 LFRKMEERSIKASVVQYSIVIDSLCKDGNLDDALSLFNEM--EMKGIKADVVAYSSIIGG 288

Query: 251 LLKGCDGIYE-TVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGF 309
           L    DG ++     L+ M+ R   P +  F    +  +    L  A+ ++  MV R G 
Sbjct: 289 LCN--DGRWDDGAKMLREMIGRNIIPNVVTFSALIDVFVKEGKLLEAKELYNEMVAR-GI 345

Query: 310 RPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASG 369
            PDT  Y+ +I  +C  N  G A ++LD MV  G  P+I TY+IL     K +++     
Sbjct: 346 APDTITYSSLIDGFCKENRLGEANQMLDLMVSKGCEPNIVTYSILINSYCKAKRVDNGMR 405

Query: 370 LFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLC 429
           LF E+     V +       V+ +  S    VA + ++ M+         T  +L+ GLC
Sbjct: 406 LFCEISSKGLVADTVTYNTLVQGFCQSGKLNVAKELFQEMVSRGVPPSVVTYGILLDGLC 465

Query: 430 DMHMLPEAVKYAKGM 444
           D   L +A++  + M
Sbjct: 466 DNGELQKALEIFEKM 480



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 84/353 (23%), Positives = 157/353 (44%), Gaps = 14/353 (3%)

Query: 122 DAIKSMKKENVL-SLATFASVFSSYVVADRVK-DAITTF-DVMEQYGCKHDVFALNSLLS 178
           D  +SM +   L SL  F+ +FS+  VA R + D +  F   M+  G +H+++ +N +++
Sbjct: 55  DLFESMIQSRPLPSLIDFSKLFSA--VARRKEYDLVLGFCKEMDLNGIEHNMYTMNIMIN 112

Query: 179 AICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWD 237
             CR  K + A+  + R +    +P+  T++ L+ G+  E  V+ A      MV E+ + 
Sbjct: 113 CFCRKRKLLFAFSVVGRALKFGFEPNTITFSTLINGFCLEGRVSEAVALVDRMV-EMKYR 171

Query: 238 PDNVPAYDSYLITL-LKGCDGIYETVNSLKRMMERGCNPG-MTFFKLAFEECLTGQNLRG 295
           P NV   ++ +  L LKG   + E +  + RM++ GC    +T+  +    C +G N   
Sbjct: 172 P-NVVTVNTLINGLCLKG--RVTEALVLIDRMVKYGCEANEITYGPVLNRMCKSG-NTAL 227

Query: 296 AEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILF 355
           A  ++  M  R   +     Y+++I   C       A+ L +EM   G   D+  Y+ + 
Sbjct: 228 ALDLFRKMEER-SIKASVVQYSIVIDSLCKDGNLDDALSLFNEMEMKGIKADVVAYSSII 286

Query: 356 EFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCS 415
             L    +  + + +  EM+    + N     A + V++       A + +  M+    +
Sbjct: 287 GGLCNDGRWDDGAKMLREMIGRNIIPNVVTFSALIDVFVKEGKLLEAKELYNEMVARGIA 346

Query: 416 DLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARK 468
             + T + L+ G C  + L EA +    M  KG +      S L     KA++
Sbjct: 347 PDTITYSSLIDGFCKENRLGEANQMLDLMVSKGCEPNIVTYSILINSYCKAKR 399



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/241 (22%), Positives = 105/241 (43%), Gaps = 9/241 (3%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRV 195
           T++S+   +   +R+ +A    D+M   GC+ ++   + L+++ C+  +  +  + F  +
Sbjct: 351 TYSSLIDGFCKENRLGEANQMLDLMVSKGCEPNIVTYSILINSYCKAKRVDNGMRLFCEI 410

Query: 196 VDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
               +  D  TY  L++G+ +   +  AK+ F EMV   G  P  V    +Y I L   C
Sbjct: 411 SSKGLVADTVTYNTLVQGFCQSGKLNVAKELFQEMVSR-GVPPSVV----TYGILLDGLC 465

Query: 256 DG--IYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDT 313
           D   + + +   ++M +     G+  + +          +  A  ++ ++  + G +PD 
Sbjct: 466 DNGELQKALEIFEKMQKSRMILGIGIYNIIIHGMCNASKVDDAWSLFCSLSVK-GVKPDV 524

Query: 314 HMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNE 373
             YN+MI   C       A  L  +M  +G  P   TYNIL    + G  +  +  L  E
Sbjct: 525 LTYNVMIGGLCKKGSLSEADMLFRKMKEDGCAPSDCTYNILIRAHLGGSGVISSVELIEE 584

Query: 374 M 374
           M
Sbjct: 585 M 585



 Score = 47.4 bits (111), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 49/232 (21%), Positives = 96/232 (41%), Gaps = 9/232 (3%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-F 192
           ++ T++ + +SY  A RV + +  F  +   G   D    N+L+   C+ GK   A + F
Sbjct: 383 NIVTYSILINSYCKAKRVDNGMRLFCEISSKGLVADTVTYNTLVQGFCQSGKLNVAKELF 442

Query: 193 LRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
             +V   + P   TY ILL+G     ++  A + F +M          +     Y I + 
Sbjct: 443 QEMVSRGVPPSVVTYGILLDGLCDNGELQKALEIFEKM-----QKSRMILGIGIYNIIIH 497

Query: 253 KGCDG--IYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFR 310
             C+   + +  +    +  +G  P +  + +         +L  A+ ++  M    G  
Sbjct: 498 GMCNASKVDDAWSLFCSLSVKGVKPDVLTYNVMIGGLCKKGSLSEADMLFRKM-KEDGCA 556

Query: 311 PDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGR 362
           P    YN++I  +   +   ++++L++EM   G   D  T  ++   L  GR
Sbjct: 557 PSDCTYNILIRAHLGGSGVISSVELIEEMKMRGFAADASTIKMVVVMLSDGR 608


>gi|297743427|emb|CBI36294.3| unnamed protein product [Vitis vinifera]
          Length = 517

 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 114/447 (25%), Positives = 181/447 (40%), Gaps = 38/447 (8%)

Query: 10  HDDPSPDPHNKRKRSTFASHLDVPNLPPT--IKTLCEIIANTPSPTVEDVLDKTLIRVSQ 67
           H   SP  H+ R  S+     D  +L  +  I  +  I+++   P  +  L++ L   SQ
Sbjct: 19  HSLSSPKTHHSRLFSSQTILQDPNSLSSSQYINEISRILSDFRDPHHD--LERPLTAFSQ 76

Query: 68  ET----VEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDA 123
           +     VEQVLK          K   +SA+  + K  P  W+ + D+    C        
Sbjct: 77  KITPGLVEQVLK--------RCKNLGFSAH--SSKQFPLIWDFLSDMRETRCC------- 119

Query: 124 IKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRD 183
                    +    F  +F +Y  A+   DAI  F  M  +G K  V  ++ LL  +C+ 
Sbjct: 120 --------EICPEIFWLIFRAYCRANLPGDAIRAFHQMGDFGVKAGVGDVDQLLYVLCKR 171

Query: 184 GKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPA 243
                A +F   V+  + P+  TY+IL+ GW    D + A+K F EM  E G   D V A
Sbjct: 172 KHVKQAQEFFDKVNVEVMPNAKTYSILMRGWGDVGDSSEARKLFEEMR-ERGCAVD-VVA 229

Query: 244 YDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAM 303
           Y+S L  L KG   + E     + M   G  P    + +         ++  A  +   M
Sbjct: 230 YNSLLEALCKG-GNVDEAYKLFREMGSNGLAPDACSYSIFIRAYCEVNDIHSAFQVLDRM 288

Query: 304 VGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRK 363
             R    P+   YN ++   C S +   A +LLDEM+  G  PD+ +YN +  F     +
Sbjct: 289 -RRYNLVPNVFTYNCIVKKLCKSEKVDEAYQLLDEMIERGVSPDLWSYNAIQAFHCDHCE 347

Query: 364 LWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNL 423
           + +A  L + M K   + +       +++ +           W  M E      + T  +
Sbjct: 348 VNKALRLISRMEKENCMPDRHTYNMVLKMLLRVGRFDRVTDVWGGMEERGFYPAASTYAV 407

Query: 424 LVAGLCDMH-MLPEAVKYAKGMAEKGI 449
           +V G C     L EA KY + M + GI
Sbjct: 408 MVHGFCKKKGKLEEACKYFEMMIDDGI 434



 Score = 39.7 bits (91), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 47/197 (23%), Positives = 83/197 (42%), Gaps = 26/197 (13%)

Query: 91  SAYQLNDKHSPYAWNLVVDLLGKNCLF---------DAMWDAIKSMKKENVL-SLATFAS 140
           SA+Q+ D+   Y  NLV ++   NC+          D  +  +  M +  V   L ++ +
Sbjct: 280 SAFQVLDRMRRY--NLVPNVFTYNCIVKKLCKSEKVDEAYQLLDEMIERGVSPDLWSYNA 337

Query: 141 VFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGK---TIDAWQFLRVVD 197
           + + +     V  A+     ME+  C  D    N +L  + R G+     D W  +   +
Sbjct: 338 IQAFHCDHCEVNKALRLISRMEKENCMPDRHTYNMVLKMLLRVGRFDRVTDVWGGME--E 395

Query: 198 GRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG--- 254
               P   TYA+++ G+ K++        + EM+I+     D +P Y S  + LL+    
Sbjct: 396 RGFYPAASTYAVMVHGFCKKKGKLEEACKYFEMMID-----DGIPPY-SCTVELLRNRVI 449

Query: 255 CDGIYETVNSLKRMMER 271
             G  E ++ L   MER
Sbjct: 450 GLGFSEQIDVLAGKMER 466


>gi|79317869|ref|NP_001031033.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75178969|sp|Q9LPX2.1|PPR39_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g12775, mitochondrial; Flags: Precursor
 gi|8698724|gb|AAF78482.1|AC012187_2 Contains similarity to an unknown protein F16M19.7 gi|6598837 from
           Arabidopsis thaliana BAC F16M19 gb|AC010795 and contains
           multiple PPR PF|01535 repeats. EST gb|AI999079 comes
           from this gene [Arabidopsis thaliana]
 gi|332190806|gb|AEE28927.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 644

 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 84/310 (27%), Positives = 150/310 (48%), Gaps = 11/310 (3%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           +L T  ++ +   +  +V DA+   D M + G + +      +L+ +C+ G+T  A + L
Sbjct: 192 TLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELL 251

Query: 194 RVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
           R ++ R IK D   Y+I+++G  K+  + NA   F EM I+ G+  D +  Y+    TL+
Sbjct: 252 RKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIK-GFKAD-IITYN----TLI 305

Query: 253 KG-CDGIY--ETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGF 309
            G C+     +    L+ M++R  +P +  F +  +  +    LR A+ +   M+ R G 
Sbjct: 306 GGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQR-GI 364

Query: 310 RPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASG 369
            P+T  YN +I  +C  N    A++++D M+  G  PDI T+NIL     K  ++ +   
Sbjct: 365 APNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLE 424

Query: 370 LFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLC 429
           LF EM     + N       V+ +  S    VA K ++ M+         +  +L+ GLC
Sbjct: 425 LFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLC 484

Query: 430 DMHMLPEAVK 439
           D   L +A++
Sbjct: 485 DNGELEKALE 494



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 82/339 (24%), Positives = 157/339 (46%), Gaps = 24/339 (7%)

Query: 121 WDAIKSMKKENV-LSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSA 179
            + ++ M++ N+ L    ++ +         + +A   F+ ME  G K D+   N+L+  
Sbjct: 248 MELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGG 307

Query: 180 ICRDGKTIDAWQFLR-VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDP 238
            C  G+  D  + LR ++  +I P+  T+++L++ + KE  +  A +   EM ++ G  P
Sbjct: 308 FCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEM-MQRGIAP 366

Query: 239 DNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPG-MTFFKLAFEECLTGQNLRGAE 297
           + +  Y+S +    K  + + E +  +  M+ +GC+P  MTF  L    C   +   G E
Sbjct: 367 NTI-TYNSLIDGFCKE-NRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLE 424

Query: 298 FIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEF 357
            ++  M  R G   +T  YN ++  +C S +   A KL  EMV     PDI +Y IL + 
Sbjct: 425 -LFREMSLR-GVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDG 482

Query: 358 LVKGRKLWEASGLFNEMVKNENVLN--------HENCRAAVRVYMDSDDPYVAIKFWKYM 409
           L    +L +A  +F ++ K++  L+        H  C A+     D+ D + ++      
Sbjct: 483 LCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNAS--KVDDAWDLFCSLPLKGVK 540

Query: 410 IENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448
           ++      +   N++++ LC    L +A    + M E+G
Sbjct: 541 LD------ARAYNIMISELCRKDSLSKADILFRKMTEEG 573



 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 86/397 (21%), Positives = 170/397 (42%), Gaps = 7/397 (1%)

Query: 84  AVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVF 142
           AV  FR    Q     +   +N +   + K   ++ +    K M+ + +  S+ T + + 
Sbjct: 72  AVDLFR-DMIQSRPLPTVIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLSIMI 130

Query: 143 SSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIK 201
           + +    ++  A +T   + + G + D    N+LL+ +C + +  +A + + R+V+   K
Sbjct: 131 NCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHK 190

Query: 202 PDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYET 261
           P   T   L+ G      V++A      MV E G+ P+ V  Y   L  + K        
Sbjct: 191 PTLITLNTLVNGLCLNGKVSDAVVLIDRMV-ETGFQPNEV-TYGPVLNVMCKSGQTAL-A 247

Query: 262 VNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMIS 321
           +  L++M ER        + +  +      +L  A  ++  M  + GF+ D   YN +I 
Sbjct: 248 MELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIK-GFKADIITYNTLIG 306

Query: 322 LYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVL 381
            +C +       KLL +M+     P++ T+++L +  VK  KL EA  L  EM++     
Sbjct: 307 GFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAP 366

Query: 382 NHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYA 441
           N     + +  +   +    AI+    MI   C     T N+L+ G C  + + + ++  
Sbjct: 367 NTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELF 426

Query: 442 KGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKK 478
           + M+ +G+       + L Q   ++ K  V ++L ++
Sbjct: 427 REMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQE 463



 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 145/344 (42%), Gaps = 42/344 (12%)

Query: 142 FSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-I 200
            SS +V  +  DA+  F  M Q      V   N L SAI +  +        + ++ + I
Sbjct: 60  LSSGLVGIKADDAVDLFRDMIQSRPLPTVIDFNRLFSAIAKTKQYELVLALCKQMESKGI 119

Query: 201 KPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYE 260
                T +I++  + + R ++ A  T G+ ++++G++PD V  +++ L  L   C  + E
Sbjct: 120 AHSIYTLSIMINCFCRCRKLSYAFSTMGK-IMKLGYEPDTV-IFNTLLNGLCLECR-VSE 176

Query: 261 TVNSLKRMMERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMM 319
            +  + RM+E G  P + T   L    CL G+ +  A  +   MV   GF+P+   Y  +
Sbjct: 177 ALELVDRMVEMGHKPTLITLNTLVNGLCLNGK-VSDAVVLIDRMV-ETGFQPNEVTYGPV 234

Query: 320 ISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM----- 374
           +++ C S +T  AM+LL +M       D   Y+I+ + L K   L  A  LFNEM     
Sbjct: 235 LNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGF 294

Query: 375 ---VKNENVLNHENCRAA--------------------VRVYMDSDDPYV-------AIK 404
              +   N L    C A                     V  +    D +V       A +
Sbjct: 295 KADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQ 354

Query: 405 FWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448
             K M++   +  + T N L+ G C  + L EA++    M  KG
Sbjct: 355 LLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKG 398



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 56/238 (23%), Positives = 102/238 (42%), Gaps = 25/238 (10%)

Query: 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FL 193
           + TF  + + Y  A+R+ D +  F  M   G   +    N+L+   C+ GK   A + F 
Sbjct: 403 IMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQ 462

Query: 194 RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGE-----MVIEVGWDPDNVPAYDSYL 248
            +V  R++PD  +Y ILL+G     ++  A + FG+     M +++G           Y+
Sbjct: 463 EMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGI----------YM 512

Query: 249 ITLLKGC-----DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAM 303
           I +   C     D  ++   SL     +G       + +   E     +L  A+ ++  M
Sbjct: 513 IIIHGMCNASKVDDAWDLFCSLPL---KGVKLDARAYNIMISELCRKDSLSKADILFRKM 569

Query: 304 VGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKG 361
               G  PD   YN++I  +   ++   A +L++EM  +G   D+ T  ++   L  G
Sbjct: 570 TEE-GHAPDELTYNILIRAHLGDDDATTAAELIEEMKSSGFPADVSTVKMVINMLSSG 626


>gi|302808965|ref|XP_002986176.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
 gi|300146035|gb|EFJ12707.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
          Length = 609

 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 96/365 (26%), Positives = 162/365 (44%), Gaps = 12/365 (3%)

Query: 117 FDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSL 176
            D   D ++SM  +   ++ T+ ++ +++  A ++++A+   + M + GC  ++   N L
Sbjct: 163 LDGAMDHLRSMGCDP--NVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVL 220

Query: 177 LSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVG 235
           + A+C+      A   ++ +++G   P+  T+  L++G+ K  +V +A+K  G MV + G
Sbjct: 221 VDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAK-G 279

Query: 236 WDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRG 295
             P NV  Y + +  L K      E    L+ M  RG  P    +            +  
Sbjct: 280 MRP-NVVTYSALIDGLCKS-QKFLEAKEVLEEMKTRGVTPDAFTYSALIHGLCKADKIEE 337

Query: 296 AEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILF 355
           AE +   M G  G  PD  +Y+ +I  +C S +   A K L EM      PD+ TYN + 
Sbjct: 338 AEQMLRRMAGS-GCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVI 396

Query: 356 EFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYV-AIKFWKYMIENHC 414
           + L K  K+ EA  +  +M ++ +VL      + V   +   D  V A K    M +  C
Sbjct: 397 DGLCKLGKIAEAQVILEQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGC 456

Query: 415 SDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARK----EA 470
           +    T   ++ GLC    L EA    +GM   G        + L   L KARK    E 
Sbjct: 457 NPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAER 516

Query: 471 VYEEL 475
           V EE+
Sbjct: 517 VMEEM 521



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 85/324 (26%), Positives = 145/324 (44%), Gaps = 8/324 (2%)

Query: 104 WNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLA-TFASVFSSYVVADRVKDAITTFDVME 162
           ++ ++D L K+  F    + ++ MK   V   A T++++      AD++++A      M 
Sbjct: 287 YSALIDGLCKSQKFLEAKEVLEEMKTRGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMA 346

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYAILLEGWEKERDVA 221
             GC  DV   +S++ A C+ GK ++A + L+ +   R  PD  TY  +++G  K   +A
Sbjct: 347 GSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIA 406

Query: 222 NAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFK 281
            A+    +M       PD V  Y + +  L K  D + E    L RM + GCNP +  + 
Sbjct: 407 EAQVILEQMQESGDVLPD-VVTYSTVINGLCKS-DMLVEAQKLLDRMCKAGCNPDVVTYT 464

Query: 282 LAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVY 341
              +       L  AE++   M  R G  P+   Y  +IS  C + +   A ++++EM  
Sbjct: 465 TIIDGLCKCGRLEEAEYLLQGM-KRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRN 523

Query: 342 NGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV--KNENVLNHENCRAAVRVYMDSDDP 399
            G  P++ TYN +   L    ++ EA  L   M   + E   +    R  V   M SD  
Sbjct: 524 AGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRMKDGRAECSPDAATYRTIVNALMSSDLV 583

Query: 400 YVAIKFWKYMIENHCSDLSETGNL 423
             A +  + M ++  S   E G+L
Sbjct: 584 QEAEQLLEQM-KSTTSSQQEQGSL 606



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 69/293 (23%), Positives = 116/293 (39%), Gaps = 43/293 (14%)

Query: 84  AVKFFRWSAYQLND-KHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVF 142
           A+ FFRW+   +    H+ ++WN ++ +L            ++  K            +F
Sbjct: 59  ALAFFRWAPASIPGFSHTAFSWNSLLQVL------------VRCKKHREA------GDLF 100

Query: 143 SSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGRIK 201
            S ++A                 C+ DV + N ++S  C  G    A + L  +      
Sbjct: 101 RSELLAS----------------CEPDVCSYNIVISGFCNAGDLHAALELLEEMKSAGFA 144

Query: 202 PDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYET 261
           PD  T+  ++       D+  A      M    G DP NV  Y + LI        + E 
Sbjct: 145 PDAFTHTPIITAMANAGDLDGAMDHLRSM----GCDP-NVVTY-TALIAAFARAKKLEEA 198

Query: 262 VNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMIS 321
           +  L+ M ERGC P +  + +  +       +  A+ +   M+   GF P+   +N ++ 
Sbjct: 199 MKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMI-EGGFAPNVMTFNSLVD 257

Query: 322 LYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
            +C       A KLL  MV  G  P++ TY+ L + L K +K  EA  +  EM
Sbjct: 258 GFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEM 310



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 73/315 (23%), Positives = 123/315 (39%), Gaps = 43/315 (13%)

Query: 165 GCKHDVFALNSLLSAICRDGKTIDAWQFLRV-VDGRIKPDNDTYAILLEGWEKERDVANA 223
           G  H  F+ NSLL  + R  K  +A    R  +    +PD  +Y I++ G+    D+  A
Sbjct: 72  GFSHTAFSWNSLLQVLVRCKKHREAGDLFRSELLASCEPDVCSYNIVISGFCNAGDLHAA 131

Query: 224 KKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLA 283
            +   EM    G+ PD      + +IT +     +   ++ L+ M   GC+P +  +   
Sbjct: 132 LELLEEMK-SAGFAPDAF--THTPIITAMANAGDLDGAMDHLRSM---GCDPNVVTYTAL 185

Query: 284 FEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNG 343
                  + L  A  +   M  R G  P+   YN+++   C  +  GAA  ++ +M+  G
Sbjct: 186 IAAFARAKKLEEAMKLLEEMRER-GCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGG 244

Query: 344 AFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAI 403
             P++ T+N L +   K   + +A  L   MV        +  R  V  Y          
Sbjct: 245 FAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVA-------KGMRPNVVTY---------- 287

Query: 404 KFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQIL 463
                             + L+ GLC      EA +  + M  +G+    F  S L   L
Sbjct: 288 ------------------SALIDGLCKSQKFLEAKEVLEEMKTRGVTPDAFTYSALIHGL 329

Query: 464 IKARKEAVYEELLKK 478
            KA K    E++L++
Sbjct: 330 CKADKIEEAEQMLRR 344



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 59/253 (23%), Positives = 94/253 (37%), Gaps = 10/253 (3%)

Query: 236 WDPDNVPAYD------SYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLT 289
           W P ++P +       + L+ +L  C    E  +  +  +   C P +  + +       
Sbjct: 65  WAPASIPGFSHTAFSWNSLLQVLVRCKKHREAGDLFRSELLASCEPDVCSYNIVISGFCN 124

Query: 290 GQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQ 349
             +L  A  +   M    GF PD   +  +I+    + +   AM  L  M   G  P++ 
Sbjct: 125 AGDLHAALELLEEM-KSAGFAPDAFTHTPIITAMANAGDLDGAMDHLRSM---GCDPNVV 180

Query: 350 TYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYM 409
           TY  L     + +KL EA  L  EM +     N       V           A    K M
Sbjct: 181 TYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKM 240

Query: 410 IENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKE 469
           IE   +    T N LV G C    + +A K    M  KG++      S L   L K++K 
Sbjct: 241 IEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKF 300

Query: 470 AVYEELLKKCKAH 482
              +E+L++ K  
Sbjct: 301 LEAKEVLEEMKTR 313


>gi|297737176|emb|CBI26377.3| unnamed protein product [Vitis vinifera]
          Length = 572

 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 99/372 (26%), Positives = 162/372 (43%), Gaps = 6/372 (1%)

Query: 96  NDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDA 154
           N K   + + +++D L K+ +     D    M    +L  +  ++S+        R+K+A
Sbjct: 141 NCKGDVFTYGMIIDSLCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEA 200

Query: 155 ITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRV-VDGRIKPDNDTYAILLEG 213
           +  F  ME  G   DV+  NSL+  + R G   +   FL + VD    PD  T+ IL++G
Sbjct: 201 LEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDG 260

Query: 214 WEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGC 273
             KE  V  A++   E++   G +PD +  Y++ L+  L     + +     + + +RG 
Sbjct: 261 LCKEGKVGEAQQIL-ELMHHKGKEPD-ILTYNT-LMNGLCLVGQLEDATKLFESLADRGI 317

Query: 274 NPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAM 333
              +  + +        Q +  A  ++  M  + G +P T  YN +I   C S     A 
Sbjct: 318 KLNVFSYNILINGYCKDQKIDEAFRLFEEMRPK-GLKPSTVTYNTLIGALCQSGRVRTAQ 376

Query: 334 KLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVY 393
           KL  EM   G F  + TY +L + L K   L EA  LF  + K E+  N E     +   
Sbjct: 377 KLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAIDLFQSIKKTEHKPNIEVFSILLDGM 436

Query: 394 MDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTP 453
             +     A K +  + +N     +   N+L+ GLC+  ML EAVK    M EKG     
Sbjct: 437 CRAGKLEEAWKQFDEISKNGLEPDTIAYNILINGLCNKGMLSEAVKLLWQMEEKGCLPDS 496

Query: 454 FALSKLKQILIK 465
              + + Q L+K
Sbjct: 497 ITFNVIIQNLLK 508



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 62/251 (24%), Positives = 114/251 (45%), Gaps = 16/251 (6%)

Query: 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR 194
           + T+ ++ +   +  +++DA   F+ +   G K +VF+ N L++  C+D K  +A++   
Sbjct: 286 ILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAFRLFE 345

Query: 195 VVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLK 253
            +  + +KP   TY  L+    +   V  A+K F EM               +Y + L  
Sbjct: 346 EMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEM-----QTCGQFLKLSTYCVLLDG 400

Query: 254 GCDG--IYETVNSLKRMMERGCNPGMTFFKLAFEE-CLTGQNLRGAEFIWGAM--VGRIG 308
            C    + E ++  + + +    P +  F +  +  C  G+     E  W     + + G
Sbjct: 401 LCKNGHLEEAIDLFQSIKKTEHKPNIEVFSILLDGMCRAGK----LEEAWKQFDEISKNG 456

Query: 309 FRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEAS 368
             PDT  YN++I+  C       A+KLL +M   G  PD  T+N++ + L+K  ++ EA 
Sbjct: 457 LEPDTIAYNILINGLCNKGMLSEAVKLLWQMEEKGCLPDSITFNVIIQNLLKENEIHEAI 516

Query: 369 GLFNEMVKNEN 379
            L  EM +N N
Sbjct: 517 QLLEEM-RNRN 526



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 78/307 (25%), Positives = 125/307 (40%), Gaps = 12/307 (3%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           T  ++     + + + DA+  FD M + G   D      L++ +C+  KT  A +    +
Sbjct: 79  TVTTLVKGVWMENGIPDAVQLFDEMTEKGLFGDAKTYGILINGLCKARKTGLAIKLHEKM 138

Query: 197 DGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD 256
            G  K D  TY ++++   K+     A   F EM I  G  PD V  Y S +  L +   
Sbjct: 139 KGNCKGDVFTYGMIIDSLCKDGMTTEALDMFSEM-IGAGILPD-VVVYSSLMDGLCR-FG 195

Query: 257 GIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRG--AEFIW--GAMVGRIGFRPD 312
            + E +   K M  RG +  +      +   + G +  G   E  W    MV R GF PD
Sbjct: 196 RLKEALEFFKEMEGRGISADV----YTYNSLIHGLSRAGLWKEVTWFLNLMVDR-GFSPD 250

Query: 313 THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFN 372
              + ++I   C   + G A ++L+ M + G  PDI TYN L   L    +L +A+ LF 
Sbjct: 251 AFTFTILIDGLCKEGKVGEAQQILELMHHKGKEPDILTYNTLMNGLCLVGQLEDATKLFE 310

Query: 373 EMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMH 432
            +      LN  +    +  Y        A + ++ M        + T N L+  LC   
Sbjct: 311 SLADRGIKLNVFSYNILINGYCKDQKIDEAFRLFEEMRPKGLKPSTVTYNTLIGALCQSG 370

Query: 433 MLPEAVK 439
            +  A K
Sbjct: 371 RVRTAQK 377



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 59/262 (22%), Positives = 113/262 (43%), Gaps = 45/262 (17%)

Query: 98  KHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAIT 156
           K + +++N++++   K+   D  +   + M+ + +  S  T+ ++  +   + RV+ A  
Sbjct: 318 KLNVFSYNILINGYCKDQKIDEAFRLFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQK 377

Query: 157 TFDVMEQYGCKHDVFALNSLLSAICRDG---KTIDAWQFLRVVDGRIKPDNDTYAILLEG 213
            F  M+  G    +     LL  +C++G   + ID +Q ++  +   KP+ + ++ILL+G
Sbjct: 378 LFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAIDLFQSIKKTEH--KPNIEVFSILLDG 435

Query: 214 WEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGC 273
             +   +  A K F E + + G +PD + AY+  LI  L     + E V  L +M E+GC
Sbjct: 436 MCRAGKLEEAWKQFDE-ISKNGLEPDTI-AYN-ILINGLCNKGMLSEAVKLLWQMEEKGC 492

Query: 274 NPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAM 333
                                                PD+  +N++I      NE   A+
Sbjct: 493 ------------------------------------LPDSITFNVIIQNLLKENEIHEAI 516

Query: 334 KLLDEMVYNGAFPDIQTYNILF 355
           +LL+EM      PD    ++L 
Sbjct: 517 QLLEEMRNRNFSPDEAVTSMLL 538



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 64/166 (38%), Gaps = 15/166 (9%)

Query: 308 GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEA 367
           GF PD      ++      N    A++L DEM   G F D +TY IL   L K RK   A
Sbjct: 72  GFEPDAVTVTTLVKGVWMENGIPDAVQLFDEMTEKGLFGDAKTYGILINGLCKARKTGLA 131

Query: 368 SGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYV-------AIKFWKYMIENHCSDLSET 420
             L  +M          NC+  V  Y    D          A+  +  MI          
Sbjct: 132 IKLHEKM--------KGNCKGDVFTYGMIIDSLCKDGMTTEALDMFSEMIGAGILPDVVV 183

Query: 421 GNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKA 466
            + L+ GLC    L EA+++ K M  +GI    +  + L   L +A
Sbjct: 184 YSSLMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRA 229


>gi|449448914|ref|XP_004142210.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Cucumis sativus]
 gi|449525343|ref|XP_004169677.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Cucumis sativus]
          Length = 768

 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 100/374 (26%), Positives = 158/374 (42%), Gaps = 26/374 (6%)

Query: 98  KHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLA----TFASVFSSYVVADRVKD 153
           +H    +N+++  L   C    +  AI  M++     L+    TF ++   Y+    +  
Sbjct: 200 RHDVSTFNILIKAL---CKAHQVRPAILMMEEMPSYGLSPDETTFTTIMQGYIEGGNLDG 256

Query: 154 AITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYAILLE 212
           A+   + M +YGC      +N L++  C+ G+   A  F++  V    +PD  TY  L+ 
Sbjct: 257 ALRIKEQMVEYGCPCTDVTVNVLINGFCKQGRIDQALSFIQEAVSEGFRPDQFTYNTLVN 316

Query: 213 GWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERG 272
           G  K     +A +    M++  G DPD +  Y+S LI+ L     I E V  L +M+ R 
Sbjct: 317 GLCKIGHAKHAMEVVDAMLLG-GLDPD-IYTYNS-LISGLCKLGEIEEAVKILDQMVSRD 373

Query: 273 CNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAA 332
           C+P    +  A    L  +N          ++   G  PD   +N +I   C S+   +A
Sbjct: 374 CSPNAVTYN-AIISSLCKENRVDEATEIARLLTSKGILPDVCTFNSLIQGLCLSSNHKSA 432

Query: 333 MKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRV 392
           M L +EM   G  PD  TYN+L + L   RKL EA  L  EM  N        C   V +
Sbjct: 433 MDLFEEMKGKGCRPDEFTYNMLIDSLCSSRKLEEALNLLKEMELN-------GCARNVVI 485

Query: 393 YMDSDDPYV-------AIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMA 445
           Y    D +        A + +  M     S  S T N L+ GLC    + +A +    M 
Sbjct: 486 YNTLIDGFCKNKRIEEAEEIFDEMELQGVSRDSVTYNTLIDGLCKSKRVEDAAQLMDQMI 545

Query: 446 EKGIQVTPFALSKL 459
            +G++   F  + L
Sbjct: 546 MEGLRPDKFTYNSL 559



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 103/405 (25%), Positives = 163/405 (40%), Gaps = 21/405 (5%)

Query: 84  AVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASVF 142
           A++ F W++ Q N   S   +  ++  LGK   F+ M   ++ MK          F    
Sbjct: 80  ALRVFNWASKQPNFVPSSSVYEEILRKLGKAGSFEYMRRVLEEMKLSGCEFDRGIFLIFV 139

Query: 143 SSYVVADRVKDAITTFDVME-QYGCKHDVFALNSLLSAICRDGK-TIDAWQFLRVVDGRI 200
            SY   +   + +    VME +Y  K D    N LL+ +    K  +       +V  RI
Sbjct: 140 ESYGKFELYDEVVGIVKVMEDEYRIKPDTRFYNVLLNVLVDANKLKLVESAHSSMVRRRI 199

Query: 201 KPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG------ 254
           + D  T+ IL++   K   V  A     EM    G  PD     ++   T+++G      
Sbjct: 200 RHDVSTFNILIKALCKAHQVRPAILMMEEMP-SYGLSPD-----ETTFTTIMQGYIEGGN 253

Query: 255 CDGIYETVNSLKRMMERGCN-PGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDT 313
            DG    +   ++M+E GC    +T   L    C  G+  +   FI  A+    GFRPD 
Sbjct: 254 LDG---ALRIKEQMVEYGCPCTDVTVNVLINGFCKQGRIDQALSFIQEAVSE--GFRPDQ 308

Query: 314 HMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNE 373
             YN +++  C       AM+++D M+  G  PDI TYN L   L K  ++ EA  + ++
Sbjct: 309 FTYNTLVNGLCKIGHAKHAMEVVDAMLLGGLDPDIYTYNSLISGLCKLGEIEEAVKILDQ 368

Query: 374 MVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHM 433
           MV  +   N     A +      +    A +  + +          T N L+ GLC    
Sbjct: 369 MVSRDCSPNAVTYNAIISSLCKENRVDEATEIARLLTSKGILPDVCTFNSLIQGLCLSSN 428

Query: 434 LPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKK 478
              A+   + M  KG +   F  + L   L  +RK      LLK+
Sbjct: 429 HKSAMDLFEEMKGKGCRPDEFTYNMLIDSLCSSRKLEEALNLLKE 473



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 76/348 (21%), Positives = 140/348 (40%), Gaps = 39/348 (11%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           T+ S+ S       +++A+   D M    C  +    N+++S++C++ +  +A +  R++
Sbjct: 345 TYNSLISGLCKLGEIEEAVKILDQMVSRDCSPNAVTYNAIISSLCKENRVDEATEIARLL 404

Query: 197 DGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
             + I PD  T+  L++G     +  +A   F EM  + G  PD      + LI  L   
Sbjct: 405 TSKGILPDVCTFNSLIQGLCLSSNHKSAMDLFEEMKGK-GCRPDEFTY--NMLIDSLCSS 461

Query: 256 DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAM----VGR----- 306
             + E +N LK M   GC   +  +    +     + +  AE I+  M    V R     
Sbjct: 462 RKLEEALNLLKEMELNGCARNVVIYNTLIDGFCKNKRIEEAEEIFDEMELQGVSRDSVTY 521

Query: 307 -------------------------IGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVY 341
                                     G RPD   YN +++ +C + +   A  ++  M  
Sbjct: 522 NTLIDGLCKSKRVEDAAQLMDQMIMEGLRPDKFTYNSLLTHFCKTGDIKKAADIVQTMTS 581

Query: 342 NGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYV 401
           +G  PDI TY  L   L K  ++  AS L   +     VL        ++     +  + 
Sbjct: 582 SGCNPDIVTYATLISGLCKAGRVQVASRLLRSIQMKGMVLTPHAYNPVIQALFKRNRTHE 641

Query: 402 AIKFWKYMIENHCSDLSETGNLLVAGLCDMHM-LPEAVKYAKGMAEKG 448
           A++ ++ M++      + T  ++  GLC+    + EAV +   M E+G
Sbjct: 642 AMRLFREMLDKSEPPDAITYKIVYRGLCNGGGPIGEAVDFTVEMIERG 689



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 59/269 (21%), Positives = 105/269 (39%), Gaps = 12/269 (4%)

Query: 202 PDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGW---DPDNVPAYDSYLITLLK-GCDG 257
           P + T   L+E   ++ D   A + F        W    P+ VP+   Y   L K G  G
Sbjct: 59  PPDFTPKQLIETLRRQTDEVAALRVFN-------WASKQPNFVPSSSVYEEILRKLGKAG 111

Query: 258 IYETVNS-LKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMY 316
            +E +   L+ M   GC      F +  E     +       I   M      +PDT  Y
Sbjct: 112 SFEYMRRVLEEMKLSGCEFDRGIFLIFVESYGKFELYDEVVGIVKVMEDEYRIKPDTRFY 171

Query: 317 NMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK 376
           N+++++   +N+          MV      D+ T+NIL + L K  ++  A  +  EM  
Sbjct: 172 NVLLNVLVDANKLKLVESAHSSMVRRRIRHDVSTFNILIKALCKAHQVRPAILMMEEMPS 231

Query: 377 NENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPE 436
                +       ++ Y++  +   A++  + M+E  C     T N+L+ G C    + +
Sbjct: 232 YGLSPDETTFTTIMQGYIEGGNLDGALRIKEQMVEYGCPCTDVTVNVLINGFCKQGRIDQ 291

Query: 437 AVKYAKGMAEKGIQVTPFALSKLKQILIK 465
           A+ + +    +G +   F  + L   L K
Sbjct: 292 ALSFIQEAVSEGFRPDQFTYNTLVNGLCK 320


>gi|225461528|ref|XP_002282646.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15200-like [Vitis vinifera]
          Length = 546

 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 100/420 (23%), Positives = 178/420 (42%), Gaps = 13/420 (3%)

Query: 39  IKTLCEIIANTPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAY-QLND 97
           ++ L +   ++    +E  L +  + ++ + V  VLK   S   PA  FF W++   +  
Sbjct: 90  VQNLLKTYRDSSVSEIEGALHQCRLSLTDDLVLDVLKRHRSDWRPAYVFFNWASRCGIES 149

Query: 98  KHSPYAW--NLVVDLLGKNCLFDAMWDAIKSM-KKENVLSLATFASVFSSYVVADRVKDA 154
            +SP     N ++D+LG+   F  M      M K++ +++  TF  + + Y  A + ++A
Sbjct: 150 GYSPGCGVHNEILDILGRMRRFHEMTQLFDEMSKRKGLVNERTFGVLLNRYAAAHKTEEA 209

Query: 155 ITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEG 213
           +  F+  +  G + D+ A  +LL ++CR  K ++  +FL         PD  +  ++L G
Sbjct: 210 VKIFNKRKGLGFELDLIAFQTLLMSLCR-YKHVEMAEFLFHSKKNEFPPDIKSMNVILNG 268

Query: 214 WEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGC 273
           W     +  AK+ F   +I     PD    Y  ++ +L K    +   V   + M E+GC
Sbjct: 269 WCVLGSLREAKR-FWNDIITSKCKPDKF-TYGIFINSLTKA-GKLSTAVKLFQAMWEKGC 325

Query: 274 NPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAM 333
           NP +       +     + +  A  +   M  R   +PD   YN +I   C         
Sbjct: 326 NPDVAICNCIIDALCFKKRIPEALEVLREMNER-DCQPDVATYNSLIKHLCKIQRFEKVY 384

Query: 334 KLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVY 393
           +LLD+M   G  P+ +TY  L   L   +K  E  G+   M +N   +N +     +++Y
Sbjct: 385 ELLDDMEQKGCLPNARTYGYL---LKSTKKPEEVPGILERMERNGCRMNSDCYNLILKLY 441

Query: 394 MDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTP 453
           MD             M  N       T  +++ GL D   + +A+ Y K M   G+   P
Sbjct: 442 MDWGYELKLRSTLDEMERNGMGPDQRTYTIMIHGLYDKGRMDDALSYFKQMTLMGMVPEP 501


>gi|449455613|ref|XP_004145547.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g43820-like [Cucumis sativus]
          Length = 572

 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 83/324 (25%), Positives = 136/324 (41%), Gaps = 40/324 (12%)

Query: 53  TVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLG 112
            +E  L  T + +SQ+ V +VL          V FF W+  Q +      ++N+++  LG
Sbjct: 130 AIEHALANTDVILSQDVVSKVLNTGSLGSEAMVTFFYWAIKQPSIPKDASSYNIILKALG 189

Query: 113 KNCLFDAMWDAIKSMKKENV-LSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVF 171
           +   FD+M D + +M +E V  +L   + V  S V   +V  A+  F  +++ G K D  
Sbjct: 190 RRGFFDSMMDVLYNMTREGVEATLEMVSIVVDSLVKGHQVSKALQFFRNLKEIGLKCDTE 249

Query: 172 ALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMV 231
            LN LL  +CR      A  F  +  G I  +  TY I++ GW +       ++    M 
Sbjct: 250 TLNILLQCMCRRSHVGAANSFFNLTKGNIPFNVMTYNIVIGGWSRYGRHGEVEQMLKAME 309

Query: 232 IEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQ 291
           ++ G+ PD +    +YLI  L   + I + V    +M E GC                  
Sbjct: 310 LD-GFSPDCLT--HTYLIECLGRANQIDDAVKIFDKMDENGCT----------------- 349

Query: 292 NLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTY 351
                              PD   YN MIS +    +    +   + M+ N   PD+ TY
Sbjct: 350 -------------------PDVDAYNAMISNFICIGDFDQCLTYYERMLSNRCEPDMNTY 390

Query: 352 NILFEFLVKGRKLWEASGLFNEMV 375
           + L    +K +K+ +A  +F+EMV
Sbjct: 391 SNLITGFLKAKKVADALEMFDEMV 414



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 65/274 (23%), Positives = 116/274 (42%), Gaps = 9/274 (3%)

Query: 79  SHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLAT 137
           SH G A  FF  +  + N   +   +N+V+    +      +   +K+M+ +       T
Sbjct: 262 SHVGAANSFFNLT--KGNIPFNVMTYNIVIGGWSRYGRHGEVEQMLKAMELDGFSPDCLT 319

Query: 138 FASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSA-ICRDGKTIDAWQFLRVV 196
              +      A+++ DA+  FD M++ GC  DV A N+++S  IC          + R++
Sbjct: 320 HTYLIECLGRANQIDDAVKIFDKMDENGCTPDVDAYNAMISNFICIGDFDQCLTYYERML 379

Query: 197 DGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD 256
             R +PD +TY+ L+ G+ K + VA+A + F EMV  +      + ++    I L     
Sbjct: 380 SNRCEPDMNTYSNLITGFLKAKKVADALEMFDEMVARIIPTTGAITSF----IQLSCSYG 435

Query: 257 GIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMY 316
             +  +   K+  + GC      +KL                IW  M    G+ PD   Y
Sbjct: 436 PPHAAMLIYKKARKVGCRISKNAYKLLLMRLSLFGKFGMLLNIWNEM-QESGYDPDVETY 494

Query: 317 NMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQT 350
              I   C + +   A+ +++E +  G FP  +T
Sbjct: 495 EHAIDCLCKTGQLENAVLVMEECLRQGFFPSRRT 528



 Score = 38.9 bits (89), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 33/148 (22%), Positives = 65/148 (43%), Gaps = 2/148 (1%)

Query: 305 GRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKL 364
           G I F   T  YN++I  +      G   ++L  M  +G  PD  T+  L E L +  ++
Sbjct: 276 GNIPFNVMT--YNIVIGGWSRYGRHGEVEQMLKAMELDGFSPDCLTHTYLIECLGRANQI 333

Query: 365 WEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLL 424
            +A  +F++M +N    + +   A +  ++   D    + +++ M+ N C     T + L
Sbjct: 334 DDAVKIFDKMDENGCTPDVDAYNAMISNFICIGDFDQCLTYYERMLSNRCEPDMNTYSNL 393

Query: 425 VAGLCDMHMLPEAVKYAKGMAEKGIQVT 452
           + G      + +A++    M  + I  T
Sbjct: 394 ITGFLKAKKVADALEMFDEMVARIIPTT 421


>gi|224130790|ref|XP_002328377.1| predicted protein [Populus trichocarpa]
 gi|222838092|gb|EEE76457.1| predicted protein [Populus trichocarpa]
          Length = 688

 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 100/384 (26%), Positives = 168/384 (43%), Gaps = 47/384 (12%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVM 161
            +N+++D L K+ L +   D +  M  + +   + T+ ++        ++ +AI  F  M
Sbjct: 305 TYNIIIDSLYKDRLVNDAADFLSEMVDQGIPPDVVTYTTILHGLCYLGQLNEAIRLFKKM 364

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERDV 220
           EQ GCK DV A N+++ ++C+D    DA +FL  +VD  I P+  TY+ +L G+     +
Sbjct: 365 EQKGCKPDVVAYNTIIDSLCKDRLVNDAMEFLSEMVDRGIPPNAVTYSTILHGFCNLGQL 424

Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDG--IYETVNSLKRMMERGCNPGM- 277
             A + F EMV       + +P   ++ I +   C    + E     + M E+G  P + 
Sbjct: 425 DEATQLFKEMV-----GRNVMPNTLTFSILVDGLCQEGMVSEARWVFETMTEKGVEPNIY 479

Query: 278 TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLD 337
           T+  L    CL  + +  A  ++  MVG+ G  PD H YN++I+ YC S     A  LL 
Sbjct: 480 TYNALMNGYCLRCK-MNEARKVFEIMVGK-GCAPDLHSYNILINGYCNSRRMDKAKALLT 537

Query: 338 EMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSD 397
           +M      P+  TYN + + L    +L +A  LF +M           C + +   +   
Sbjct: 538 QMSVKKLTPNTVTYNTIMKGLCYVGRLLDAQELFKKM-----------CSSGMLPTL--- 583

Query: 398 DPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALS 457
                                 T ++L+ GLC    L EA+K  K M EK ++      +
Sbjct: 584 ---------------------MTYSILLNGLCKHGHLDEALKLFKSMKEKKLEPDIILYT 622

Query: 458 KLKQILIKARKEAVYEELLKKCKA 481
            L + +    K  V + L  K  A
Sbjct: 623 ILIEGMFIGGKLEVAKGLFSKLSA 646



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 89/355 (25%), Positives = 159/355 (44%), Gaps = 8/355 (2%)

Query: 99  HSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITT 157
           H+ Y+ N++++ L +    D        M K  +   + TF ++ +      ++K A+  
Sbjct: 126 HTVYSLNILINCLCRLNHVDFAVSVWGKMFKLGIQPDVITFTTLINGVCNEGKIKVAVEL 185

Query: 158 FDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEK 216
           ++ M + G + DV + N+L++ +C  G T  A   F ++     KP+  TY  +++   K
Sbjct: 186 YNEMVRSGHEPDVISYNTLINGLCNSGNTNMAVHVFKKMEQNGCKPNVVTYNTIIDSLCK 245

Query: 217 ERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDG-IYETVNSLKRMMERGCNP 275
           +R V +A     EMV   G  PD +  Y+S +  L   C G + E     KRM + GC P
Sbjct: 246 DRLVNDAMDFLSEMVGR-GIPPDAI-TYNSIVHGLC--CLGQLNEATRLFKRMEQNGCKP 301

Query: 276 GMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKL 335
            +  + +  +     + +  A      MV + G  PD   Y  ++   CY  +   A++L
Sbjct: 302 DVVTYNIIIDSLYKDRLVNDAADFLSEMVDQ-GIPPDVVTYTTILHGLCYLGQLNEAIRL 360

Query: 336 LDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMD 395
             +M   G  PD+  YN + + L K R + +A    +EMV      N       +  + +
Sbjct: 361 FKKMEQKGCKPDVVAYNTIIDSLCKDRLVNDAMEFLSEMVDRGIPPNAVTYSTILHGFCN 420

Query: 396 SDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQ 450
                 A + +K M+  +    + T ++LV GLC   M+ EA    + M EKG++
Sbjct: 421 LGQLDEATQLFKEMVGRNVMPNTLTFSILVDGLCQEGMVSEARWVFETMTEKGVE 475



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 81/322 (25%), Positives = 143/322 (44%), Gaps = 15/322 (4%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKT---IDAW 190
           S+  F     S     +    +   + M+ +G  H V++LN L++ +CR       +  W
Sbjct: 92  SIVEFGKFLGSIAKMKQYSTVVYLCNQMDLFGVTHTVYSLNILINCLCRLNHVDFAVSVW 151

Query: 191 QFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLIT 250
              ++    I+PD  T+  L+ G   E  +  A + + EMV   G +PD V +Y++ LI 
Sbjct: 152 G--KMFKLGIQPDVITFTTLINGVCNEGKIKVAVELYNEMV-RSGHEPD-VISYNT-LIN 206

Query: 251 LLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFR 310
            L         V+  K+M + GC P +  +    +     + +  A      MVGR G  
Sbjct: 207 GLCNSGNTNMAVHVFKKMEQNGCKPNVVTYNTIIDSLCKDRLVNDAMDFLSEMVGR-GIP 265

Query: 311 PDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGL 370
           PD   YN ++   C   +   A +L   M  NG  PD+ TYNI+ + L K R + +A+  
Sbjct: 266 PDAITYNSIVHGLCCLGQLNEATRLFKRMEQNGCKPDVVTYNIIIDSLYKDRLVNDAADF 325

Query: 371 FNEMVKN---ENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAG 427
            +EMV      +V+ +      +  Y+   +   AI+ +K M +  C       N ++  
Sbjct: 326 LSEMVDQGIPPDVVTYTTILHGL-CYLGQLNE--AIRLFKKMEQKGCKPDVVAYNTIIDS 382

Query: 428 LCDMHMLPEAVKYAKGMAEKGI 449
           LC   ++ +A+++   M ++GI
Sbjct: 383 LCKDRLVNDAMEFLSEMVDRGI 404



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 85/363 (23%), Positives = 144/363 (39%), Gaps = 44/363 (12%)

Query: 154 AITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-------------- 199
           A+  F  MEQ GCK +V   N+++ ++C+D    DA  FL  + GR              
Sbjct: 217 AVHVFKKMEQNGCKPNVVTYNTIIDSLCKDRLVNDAMDFLSEMVGRGIPPDAITYNSIVH 276

Query: 200 ----------------------IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWD 237
                                  KPD  TY I+++   K+R V +A     EMV + G  
Sbjct: 277 GLCCLGQLNEATRLFKRMEQNGCKPDVVTYNIIIDSLYKDRLVNDAADFLSEMV-DQGIP 335

Query: 238 PDNVPAYDSYLITLLKGC--DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRG 295
           PD V    +Y   L   C    + E +   K+M ++GC P +  +    +     + +  
Sbjct: 336 PDVV----TYTTILHGLCYLGQLNEAIRLFKKMEQKGCKPDVVAYNTIIDSLCKDRLVND 391

Query: 296 AEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILF 355
           A      MV R G  P+   Y+ ++  +C   +   A +L  EMV     P+  T++IL 
Sbjct: 392 AMEFLSEMVDR-GIPPNAVTYSTILHGFCNLGQLDEATQLFKEMVGRNVMPNTLTFSILV 450

Query: 356 EFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCS 415
           + L +   + EA  +F  M +     N     A +  Y        A K ++ M+   C+
Sbjct: 451 DGLCQEGMVSEARWVFETMTEKGVEPNIYTYNALMNGYCLRCKMNEARKVFEIMVGKGCA 510

Query: 416 DLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEEL 475
               + N+L+ G C+   + +A      M+ K +       + + + L    +    +EL
Sbjct: 511 PDLHSYNILINGYCNSRRMDKAKALLTQMSVKKLTPNTVTYNTIMKGLCYVGRLLDAQEL 570

Query: 476 LKK 478
            KK
Sbjct: 571 FKK 573


>gi|302141714|emb|CBI18917.3| unnamed protein product [Vitis vinifera]
          Length = 496

 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 101/417 (24%), Positives = 178/417 (42%), Gaps = 43/417 (10%)

Query: 65  VSQETVEQVLKFSYSHPGP-AVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDA 123
           + +  +E+     +  P P  + FF W+       HSP  +  ++DL GK          
Sbjct: 109 IVRRVIEKCGGVRHGIPFPQTLAFFNWATNLEEFGHSPEPYMEMIDLAGK---------- 158

Query: 124 IKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRD 183
                                   A    +A+  F+ ME YGCK D  A + ++S++ + 
Sbjct: 159 ------------------------AGLAAEAVHAFNRMEDYGCKPDKIAFSVVISSLSKK 194

Query: 184 GKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPA 243
            + I+A  F   +  R +PD   Y  L+ GW +  +++ A++ FGEM +  G  P NV  
Sbjct: 195 RRAIEAQSFFDSLKDRFEPDVVVYTSLVHGWCRAGNISEAERVFGEMKM-AGIQP-NVYT 252

Query: 244 YDSYLITLLKGCDGIYETVNSLKRMMERGCNP-GMTFFKLAFEECLTGQNLRGAEFIWGA 302
           Y S +I  L     I    +    M++ GC+P  +TF  L       G+  +  + ++  
Sbjct: 253 Y-SIVIDALCRSGQITRAHDVFSEMIDVGCDPNAITFNNLMRVHVKAGRTEKVLQ-VYNQ 310

Query: 303 MVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGR 362
           M  R+G  PD   YN +I  +C  +    A+K+L+  V  G   +  ++N +F  + K  
Sbjct: 311 M-KRLGCPPDAITYNFLIESHCRDDNLEEAVKILNS-VKKGCNLNASSFNPIFGCISKLG 368

Query: 363 KLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGN 422
            +  A  +F +M   +   N       +R++ D     + +K  K M EN     + T  
Sbjct: 369 DVNSAHRMFAKMKDLKCRPNTVTYNILMRMFADKKSTDMVLKLRKEMDENEIEPNANTYR 428

Query: 423 LLVAGLCDMHMLPEAVKYAKGM-AEKGIQVTPFALSKLKQILIKARKEAVYEELLKK 478
           +L++  C +     A  + K M  EK ++ +      + Q L KA +   +EEL++K
Sbjct: 429 VLISTFCGIGHWNNAYSFFKEMIEEKCLRPSLPVYEMVLQQLRKAGQLKKHEELVEK 485



 Score = 45.8 bits (107), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 48/243 (19%), Positives = 96/243 (39%), Gaps = 4/243 (1%)

Query: 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLA-TFASVFSSYVVADRVKDAITTFDV 160
           Y +++V+D L ++       D    M        A TF ++   +V A R +  +  ++ 
Sbjct: 251 YTYSIVIDALCRSGQITRAHDVFSEMIDVGCDPNAITFNNLMRVHVKAGRTEKVLQVYNQ 310

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDV 220
           M++ GC  D    N L+ + CRD    +A + L  V      +  ++  +     K  DV
Sbjct: 311 MKRLGCPPDAITYNFLIESHCRDDNLEEAVKILNSVKKGCNLNASSFNPIFGCISKLGDV 370

Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFF 280
            +A + F +M  ++   P+ V  Y+  L+ +          +   K M E    P    +
Sbjct: 371 NSAHRMFAKMK-DLKCRPNTV-TYN-ILMRMFADKKSTDMVLKLRKEMDENEIEPNANTY 427

Query: 281 KLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMV 340
           ++         +   A   +  M+     RP   +Y M++     + +     +L+++MV
Sbjct: 428 RVLISTFCGIGHWNNAYSFFKEMIEEKCLRPSLPVYEMVLQQLRKAGQLKKHEELVEKMV 487

Query: 341 YNG 343
             G
Sbjct: 488 NRG 490


>gi|224111364|ref|XP_002315827.1| predicted protein [Populus trichocarpa]
 gi|222864867|gb|EEF01998.1| predicted protein [Populus trichocarpa]
          Length = 472

 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 91/411 (22%), Positives = 180/411 (43%), Gaps = 21/411 (5%)

Query: 54  VEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLG- 112
           +E  LD+  + ++ + V  VL   +     + +FF W+ +Q N  H P A+N ++D+L  
Sbjct: 16  LEKTLDQLGLELTTDLVLNVLGRLHFEEKTSFRFFMWAGHQKNYSHEPCAYNEMIDILTS 75

Query: 113 ---KNCLFDAMWDAIKSMKK--ENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCK 167
              K   F  + D +  MK+  +NV+ +    ++  +Y   ++    +  F   ++   K
Sbjct: 76  TKYKARQFRIVCDMLDYMKRNNKNVVPVEVLLTILRNY--TEKYLTRVQKFAKKKRIRVK 133

Query: 168 H--DVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKK 225
              ++ A N LL A+C+     DA    + V  ++KPD +TY ++  GW + R+     K
Sbjct: 134 TQPEINAFNLLLDALCKCCLAEDAEGLFKRVKNKVKPDANTYNVMFFGWCRVRNPTRGMK 193

Query: 226 TFGEMVIEVGWDPDNVPAYDSYLITLLKGCDG--IYETVNSLKRMMERG---CNPGMTFF 280
              EM I++G  PD+     +Y+  +   C    + E     + M  +G    +P    +
Sbjct: 194 VLEEM-IQLGHTPDSF----TYITAIDAFCRAGMVNEAAELFEFMRTKGSTMSSPTAKTY 248

Query: 281 KLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMV 340
            +     +    +     +   M+   G  PD   +  +I   C + +   A + L EM 
Sbjct: 249 AIMIGALVRNNRMDECFKLLEDMINS-GCLPDVSTFKELIEGMCSAGKIDEAYRFLQEMG 307

Query: 341 YNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPY 400
             G  PDI TYN   + L + +   EA  L+  M++     + +     + ++ +  DP 
Sbjct: 308 NKGYPPDIVTYNCFLKVLCENKNSEEALRLYERMIEAGCFPSVQTHNMLISMFFEMGDPD 367

Query: 401 VAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQV 451
            A + W  M +  C+   +T  +++ GL   + + +A    + +  KG+++
Sbjct: 368 GAFETWYEMDKRGCAQDVDTYIVMIDGLFGCNKVEDACFLIEDIVNKGMKL 418


>gi|240255563|ref|NP_190542.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546755|sp|P0C8A0.1|PP275_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g49730
 gi|332645062|gb|AEE78583.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 638

 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 100/423 (23%), Positives = 174/423 (41%), Gaps = 15/423 (3%)

Query: 39  IKTLCEIIANTPS--PTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLN 96
           ++ +  I+ N  S  P +E  L+++ I +    + +VL           +FF W+  Q  
Sbjct: 67  VEKIYRILRNHHSRVPKLELALNESGIDLRPGLIIRVLSRCGDAGNLGYRFFLWATKQPG 126

Query: 97  DKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKEN--VLSLATFASVFSSYVVADRVKDA 154
             HS      +V +L K   F A+W  I+ M+K N  ++    F  +   +  A+ VK A
Sbjct: 127 YFHSYEVCKSMVMILSKMRQFGAVWGLIEEMRKTNPELIEPELFVVLMRRFASANMVKKA 186

Query: 155 ITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGW 214
           +   D M +YG + D +    LL A+C++G   +A +    +  +  P+   +  LL GW
Sbjct: 187 VEVLDEMPKYGLEPDEYVFGCLLDALCKNGSVKEASKVFEDMREKFPPNLRYFTSLLYGW 246

Query: 215 EKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG---CDGIYETVNSLKRMMER 271
            +E  +  AK+   +M  E G +PD V         LL G      + +  + +  M +R
Sbjct: 247 CREGKLMEAKEVLVQMK-EAGLEPDIV-----VFTNLLSGYAHAGKMADAYDLMNDMRKR 300

Query: 272 GCNPGMTFFKLAFEE-CLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETG 330
           G  P +  + +  +  C T + +  A  ++  M  R G   D   Y  +IS +C      
Sbjct: 301 GFEPNVNCYTVLIQALCRTEKRMDEAMRVFVEM-ERYGCEADIVTYTALISGFCKWGMID 359

Query: 331 AAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAV 390
               +LD+M   G  P   TY  +     K  +  E   L  +M +     +       +
Sbjct: 360 KGYSVLDDMRKKGVMPSQVTYMQIMVAHEKKEQFEECLELIEKMKRRGCHPDLLIYNVVI 419

Query: 391 RVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQ 450
           R+     +   A++ W  M  N  S   +T  +++ G      L EA  + K M  +GI 
Sbjct: 420 RLACKLGEVKEAVRLWNEMEANGLSPGVDTFVIMINGFTSQGFLIEACNHFKEMVSRGIF 479

Query: 451 VTP 453
             P
Sbjct: 480 SAP 482


>gi|115475660|ref|NP_001061426.1| Os08g0272200 [Oryza sativa Japonica Group]
 gi|37806221|dbj|BAC99723.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|37806377|dbj|BAC99889.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113623395|dbj|BAF23340.1| Os08g0272200 [Oryza sativa Japonica Group]
 gi|125602810|gb|EAZ42135.1| hypothetical protein OsJ_26694 [Oryza sativa Japonica Group]
          Length = 528

 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 87/367 (23%), Positives = 153/367 (41%), Gaps = 11/367 (2%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVME 162
           AW+L +   GK   FD  W  ++ M +  VL+      V   Y  A+ V  AI TFD ME
Sbjct: 145 AWHLTIWAAGKARRFDLAWAVVRRMLRRGVLTSRAMVIVMERYAAANEVNKAIKTFDAME 204

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGW-EKERDVA 221
           ++  + D     SLL A+C++    DA + L V         + + I+L+GW     D+A
Sbjct: 205 KFKTEADQTVFYSLLRALCKNKNIEDAEELLLVRKKFFPLTAEGFNIILDGWCNVITDIA 264

Query: 222 NAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFK 281
            AK+ + EM       PD      + +++       +++T+     M +RG  P +  + 
Sbjct: 265 EAKRIWREMS-NYCITPDGTSY--TLMVSCFAKVGNLFDTLRVYDEMKKRGWTPSIAVYN 321

Query: 282 LAFEECLTGQN-LRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMV 340
            +    LT +N ++  + I+  ++   G +P+   YN MI   C S +   A  +L++M+
Sbjct: 322 -SLIYVLTKENCMKDVQNIFTRIIDE-GLQPNVKTYNSMIVPLCESRKLDEARMVLEDMM 379

Query: 341 YNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPY 400
             G  P I TY+      ++   + E      +M  +      +     +  +   ++P 
Sbjct: 380 LKGIVPTILTYHT----FLRQENIDETLKFLKKMKDDGCGPKSDTFLMLIDRFFQLNEPG 435

Query: 401 VAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLK 460
            A+K W  M              +V GL     +  A++Y   M E G    P    + +
Sbjct: 436 HALKLWNEMKRYDIRPSYSHYMSVVQGLIKHGCMQRALEYYDEMKENGFASDPKLEKEFR 495

Query: 461 QILIKAR 467
             L+  R
Sbjct: 496 TFLLANR 502



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 52/237 (21%), Positives = 97/237 (40%), Gaps = 9/237 (3%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRV 195
           ++  + S +     + D +  +D M++ G    +   NSL+  + ++    D    F R+
Sbjct: 284 SYTLMVSCFAKVGNLFDTLRVYDEMKKRGWTPSIAVYNSLIYVLTKENCMKDVQNIFTRI 343

Query: 196 VDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
           +D  ++P+  TY  ++    + R +  A+    +M+++       VP   +Y   L +  
Sbjct: 344 IDEGLQPNVKTYNSMIVPLCESRKLDEARMVLEDMMLK-----GIVPTILTYHTFLRQ-- 396

Query: 256 DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHM 315
           + I ET+  LK+M + GC P    F +  +          A  +W  M  R   RP    
Sbjct: 397 ENIDETLKFLKKMKDDGCGPKSDTFLMLIDRFFQLNEPGHALKLWNEM-KRYDIRPSYSH 455

Query: 316 YNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFN 372
           Y  ++           A++  DEM  NG   D +       FL+  R  W  +G +N
Sbjct: 456 YMSVVQGLIKHGCMQRALEYYDEMKENGFASDPKLEKEFRTFLLANRDHWRGAGKYN 512


>gi|6723418|emb|CAB66911.1| putative protein [Arabidopsis thaliana]
          Length = 1184

 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 97/408 (23%), Positives = 167/408 (40%), Gaps = 13/408 (3%)

Query: 52  PTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLL 111
           P +E  L+++ I +    + +VL           +FF W+  Q    HS      +V +L
Sbjct: 82  PKLELALNESGIDLRPGLIIRVLSRCGDAGNLGYRFFLWATKQPGYFHSYEVCKSMVMIL 141

Query: 112 GKNCLFDAMWDAIKSMKKEN--VLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHD 169
            K   F A+W  I+ M+K N  ++    F  +   +  A+ VK A+   D M +YG + D
Sbjct: 142 SKMRQFGAVWGLIEEMRKTNPELIEPELFVVLMRRFASANMVKKAVEVLDEMPKYGLEPD 201

Query: 170 VFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGE 229
            +    LL A+C++G   +A +    +  +  P+   +  LL GW +E  +  AK+   +
Sbjct: 202 EYVFGCLLDALCKNGSVKEASKVFEDMREKFPPNLRYFTSLLYGWCREGKLMEAKEVLVQ 261

Query: 230 MVIEVGWDPDNVPAYDSYLITLLKG---CDGIYETVNSLKRMMERGCNPGMTFFKLAFEE 286
           M  E G +PD V         LL G      + +  + +  M +RG  P +  + +  + 
Sbjct: 262 MK-EAGLEPDIV-----VFTNLLSGYAHAGKMADAYDLMNDMRKRGFEPNVNCYTVLIQA 315

Query: 287 -CLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAF 345
            C T + +  A  ++  M  R G   D   Y  +IS +C          +LD+M   G  
Sbjct: 316 LCRTEKRMDEAMRVFVEM-ERYGCEADIVTYTALISGFCKWGMIDKGYSVLDDMRKKGVM 374

Query: 346 PDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKF 405
           P   TY  +     K  +  E   L  +M +     +       +R+     +   A++ 
Sbjct: 375 PSQVTYMQIMVAHEKKEQFEECLELIEKMKRRGCHPDLLIYNVVIRLACKLGEVKEAVRL 434

Query: 406 WKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTP 453
           W  M  N  S   +T  +++ G      L EA  + K M  +GI   P
Sbjct: 435 WNEMEANGLSPGVDTFVIMINGFTSQGFLIEACNHFKEMVSRGIFSAP 482


>gi|255551140|ref|XP_002516618.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223544438|gb|EEF45959.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 577

 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 111/460 (24%), Positives = 192/460 (41%), Gaps = 32/460 (6%)

Query: 5   DKRRHHDDPSPDPHNKRKRSTFASHLDVPNLPPT-IKTLCEIIANTPSPTVEDVLDKTLI 63
           D  RHH  P   P    K     S    PN   +   TLC ++++     +E  LD+T I
Sbjct: 29  DSPRHHRRPKWTPPLPEK---LPSPTANPNYSHSDFSTLCNLLSDPNLKPLETALDQTGI 85

Query: 64  RVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDA 123
           +     +  V     S P      F W+  Q   + S   +N V++ LGK   FD+ W  
Sbjct: 86  KPETSLLNAVFDHFNSSPKLLHSLFVWADKQPEFESSTTLFNSVINALGKMKEFDSAWCL 145

Query: 124 IKSMKKENVLSLATFASVFSSYVVADRVKDAITTFD--VMEQYGCKHDVFA-LNSLLSAI 180
           +  + +  ++S  TFA +   Y  A   + AI TF+  +   + C ++  A L  LL ++
Sbjct: 146 V--LDRTGLVSSDTFAILIRRYTRAGMPQSAIRTFEYAISLDFICDYNCDALLEILLDSL 203

Query: 181 CRDGKTIDAWQFL---RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWD 237
           C++G    A ++    + +D    P    Y I+L GW + R + +A++ + EM       
Sbjct: 204 CKEGHVRVAKEYFDSRKQLDSCWIPHVRIYNIMLNGWFRSRKLKHAERLWLEM------K 257

Query: 238 PDNV-PAYDSYLITLLKG---CDGIYETVNSLKRMMERGCNPGMTFFKL---AFEECLTG 290
            +NV P+  +Y  TL++G      +   +  +  M + G  P    +     A  E    
Sbjct: 258 KNNVSPSVVTY-GTLVEGYCRMRRVERAIELVDVMRKEGIEPNALVYNPIIDALAEEGRF 316

Query: 291 QNLRG-AEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQ 349
           + + G  E+   +  G     P    YN ++  YC + +   A K+L  M+  G  P   
Sbjct: 317 KEVSGMMEYFLQSESG-----PTISTYNSLVKGYCKAKDPVGASKVLKMMISRGFVPTPT 371

Query: 350 TYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYM 409
           TYN  F    K   + E   L+ +M+++    +       +++  + +   +A++  K M
Sbjct: 372 TYNYFFRHFSKFGMIEEGMNLYTKMIESGYTPDRLTFHLLLKMLCEEERLDLAVQISKEM 431

Query: 410 IENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
               C     T  +L+   C MH   EA    + M +KGI
Sbjct: 432 RSRGCDMDLATSTMLIHLFCRMHRFEEAFMEFEDMIQKGI 471


>gi|356542070|ref|XP_003539494.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02060,
           chloroplastic-like [Glycine max]
          Length = 729

 Score =  104 bits (260), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 106/457 (23%), Positives = 191/457 (41%), Gaps = 34/457 (7%)

Query: 11  DDPSPDPHNKRKRSTFASHLDVPNLPPTIKTLCEIIANTPSPTVEDVLDKTLIRVSQETV 70
            DP   P N R RS  AS         T KT+  +I + P      +L   LI +S+ TV
Sbjct: 32  SDPQEQPQNSRPRSRNASK--------TAKTIANLINSKPFSN--GLLSSLLITISKTTV 81

Query: 71  EQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKE 130
            + L+     P  A++FF+W+  Q    H+P ++ +++++LG+    +   + + S++K 
Sbjct: 82  LRTLRL-IKDPSKALRFFKWTQ-QKGFSHTPESYFIMLEILGRERNLNVARNFLFSIEKH 139

Query: 131 NVLSLAT----FASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKT 186
           +  ++      F S+  SY  A   K+++  F  M+       V   NSL+S + + G+T
Sbjct: 140 SKGTVKLEDRFFNSLIRSYAEAGLFKESMKLFQTMKSIAVSPSVVTFNSLMSILLKRGRT 199

Query: 187 IDAWQFLRVVDGR--IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAY 244
             A +    + G   + PD  TY +L+ G+ K   V    + F EM      D D V  Y
Sbjct: 200 NMAKEVYDEMLGTYGVSPDTCTYNVLIRGFCKNSMVDEGFRFFREME-SFNCDAD-VVTY 257

Query: 245 DSYLITLLKGCDGIYETVNSLKRMMERGC---NPGMTFFKLAFEECLTGQNLRGAEFIWG 301
           ++ +  L +   G      +L   M + C   NP +  +          Q +  A  +  
Sbjct: 258 NTLVDGLCRA--GKVRIARNLVNGMGKKCEGLNPNVVTYTTLIRGYCMKQEVEEALVVLE 315

Query: 302 AMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAF-PDIQTYNILFEFLVK 360
            M  R G +P+   YN ++   C +++      +L+ M  +G F PD  T+N +      
Sbjct: 316 EMTSR-GLKPNMITYNTLVKGLCEAHKLDKMKDVLERMKSDGGFSPDTFTFNTIIHLHCC 374

Query: 361 GRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENH------- 413
              L EA  +F  M K     +  +    +R      D  +A + +  + E         
Sbjct: 375 AGNLDEALKVFESMKKFRIPADSASYSTLIRSLCQKGDYDMAEQLFDELFEKEILLSKFG 434

Query: 414 CSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQ 450
              L+ + N +   LC+     +A +  + + ++G Q
Sbjct: 435 SKPLAASYNPIFESLCEHGKTKKAERVIRQLMKRGTQ 471



 Score = 45.1 bits (105), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 61/299 (20%), Positives = 115/299 (38%), Gaps = 32/299 (10%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVLS------------LATFASVFSSYVVADR 150
           ++N   D++  N L D +  A K     N+++            + T+ ++   Y +   
Sbjct: 247 SFNCDADVVTYNTLVDGLCRAGKVRIARNLVNGMGKKCEGLNPNVVTYTTLIRGYCMKQE 306

Query: 151 VKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV--DGRIKPDNDTYA 208
           V++A+   + M   G K ++   N+L+  +C   K       L  +  DG   PD  T+ 
Sbjct: 307 VEEALVVLEEMTSRGLKPNMITYNTLVKGLCEAHKLDKMKDVLERMKSDGGFSPDTFTFN 366

Query: 209 ILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG-CD-GIYETVNSL- 265
            ++       ++  A K F  M          +PA  +   TL++  C  G Y+    L 
Sbjct: 367 TIIHLHCCAGNLDEALKVFESM------KKFRIPADSASYSTLIRSLCQKGDYDMAEQLF 420

Query: 266 KRMMER-------GCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNM 318
             + E+       G  P    +   FE        + AE +   ++ R    P +  Y  
Sbjct: 421 DELFEKEILLSKFGSKPLAASYNPIFESLCEHGKTKKAERVIRQLMKRGTQDPQS--YTT 478

Query: 319 MISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKN 377
           +I  +C      +  +LL  M+     PDI+ Y+ L +  ++  K   A     +M+K+
Sbjct: 479 VIMGHCKEGAYESGYELLMWMLRRDFLPDIEIYDYLIDGFLQKDKPLLAKETLEKMLKS 537



 Score = 41.6 bits (96), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 76/389 (19%), Positives = 154/389 (39%), Gaps = 34/389 (8%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVLS--LATFASVFSSYVVADRVKDAITTFDV 160
            +N +V  L +    D M D ++ MK +   S    TF ++   +  A  + +A+  F+ 
Sbjct: 328 TYNTLVKGLCEAHKLDKMKDVLERMKSDGGFSPDTFTFNTIIHLHCCAGNLDEALKVFES 387

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRI-------KPDNDTYAILLE 212
           M+++    D  + ++L+ ++C+ G    A Q F  + +  I       KP   +Y  + E
Sbjct: 388 MKKFRIPADSASYSTLIRSLCQKGDYDMAEQLFDELFEKEILLSKFGSKPLAASYNPIFE 447

Query: 213 GWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC-DGIYETVNSLKR-MME 270
              +      A++   +++     DP       SY   ++  C +G YE+   L   M+ 
Sbjct: 448 SLCEHGKTKKAERVIRQLMKRGTQDPQ------SYTTVIMGHCKEGAYESGYELLMWMLR 501

Query: 271 RGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLY----CYS 326
           R   P +  +    +  L       A+     M+ +  ++P T  ++ +++      C  
Sbjct: 502 RDFLPDIEIYDYLIDGFLQKDKPLLAKETLEKML-KSSYQPKTSTWHSVLAKLLEKGCAH 560

Query: 327 NETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWE-ASGLFNEMVKNENVLNHEN 385
             +   + +L++ V        ++  +LF     GR+  E A  + N + KN   +  E 
Sbjct: 561 ESSCVIVMMLEKNVRQNINLSTESLQLLF-----GREQHERAFEIINLLYKNGYYVKIEE 615

Query: 386 CRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMA 445
                +  +       A K   + +ENH +   +  N  +  LC ++ + EA      + 
Sbjct: 616 ---VAQFLLKRGKLSEACKLLLFSLENHQNVDIDLCNATILNLCKINKVSEAFSLCYELV 672

Query: 446 EKGIQVTPFALSKLKQILIKA--RKEAVY 472
           E G+      L  L   L +   R+EA +
Sbjct: 673 ENGLHQELTCLDDLIAALEEGGKREEAAF 701



 Score = 39.3 bits (90), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 68/167 (40%), Gaps = 3/167 (1%)

Query: 312 DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLF 371
           +   +N +I  Y  +     +MKL   M      P + T+N L   L+K  +   A  ++
Sbjct: 147 EDRFFNSLIRSYAEAGLFKESMKLFQTMKSIAVSPSVVTFNSLMSILLKRGRTNMAKEVY 206

Query: 372 NEMVKNENVLNHENCRAAVRVYMDSDDPYV--AIKFWKYMIENHCSDLSETGNLLVAGLC 429
           +EM+    V + + C   V +     +  V    +F++ M   +C     T N LV GLC
Sbjct: 207 DEMLGTYGV-SPDTCTYNVLIRGFCKNSMVDEGFRFFREMESFNCDADVVTYNTLVDGLC 265

Query: 430 DMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELL 476
               +  A     GM +K   + P  ++    I     K+ V E L+
Sbjct: 266 RAGKVRIARNLVNGMGKKCEGLNPNVVTYTTLIRGYCMKQEVEEALV 312


>gi|449462136|ref|XP_004148797.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Cucumis sativus]
          Length = 660

 Score =  104 bits (260), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 106/400 (26%), Positives = 171/400 (42%), Gaps = 29/400 (7%)

Query: 84  AVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVF 142
           A+K F +   +   K +   +N ++D L     F  +     +MKK+ ++ ++ T+  + 
Sbjct: 128 ALKMF-YRIGEFGCKPTVRIYNHLLDALLSENKFQMINPLYTNMKKDGLIPNVFTYNILL 186

Query: 143 SSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKP 202
            +    DRV  A   F  M   GC  D     +++S++C+ GK  DA    R + GR KP
Sbjct: 187 KALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDA----RELAGRFKP 242

Query: 203 DNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETV 262
               Y  L++G  KE  +  A K  GEM ++ G DP NV +Y   + +L     G  E  
Sbjct: 243 SVPVYNALIDGMCKEGRIEVAIKLLGEM-MDNGVDP-NVVSYSCIINSLC--VSGNVELA 298

Query: 263 NSL-KRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMIS 321
            +L  +M  RGC+  +  F    + C     L  A  +W  M+ + G  P+   YN +I 
Sbjct: 299 FALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMI-QDGCEPNVVAYNTLIH 357

Query: 322 LYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVL 381
             C +     A+++ D+M  +G  P++ TY+IL +   K   L  AS  +N M+ +    
Sbjct: 358 GLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISH---- 413

Query: 382 NHENCRAAVRVYMDSDDPYV-------AIKFWKYMIENHCSDLSETGNLLVAGLCDMHML 434
               CR  V  Y    D          A    + M    C+  + T N  + GLC    +
Sbjct: 414 ---GCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTMTFNTFIKGLCGNGRV 470

Query: 435 PEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEE 474
             A+K  + M   G        ++L   L +  K   YEE
Sbjct: 471 EWAMKLLERMQGHGCLPNITTYNELLDALFRMNK---YEE 507



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 90/379 (23%), Positives = 145/379 (38%), Gaps = 52/379 (13%)

Query: 84  AVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLA-TFASVF 142
            + FF   A     +H+   + ++++ LG+ C  D +   ++ MK + +      F  + 
Sbjct: 57  VLGFFSAIANSNAFQHTASTYRVMIERLGRECEMDMVQYILQQMKMDGINCCEDLFICII 116

Query: 143 SSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGK--TIDAWQFLRVVDGRI 200
           + Y      + A+  F  + ++GCK  V   N LL A+  + K   I+        DG I
Sbjct: 117 NGYKRVGSAEQALKMFYRIGEFGCKPTVRIYNHLLDALLSENKFQMINPLYTNMKKDGLI 176

Query: 201 KPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYE 260
            P+  TY ILL+   K   V  A K F EM                              
Sbjct: 177 -PNVFTYNILLKALCKNDRVDAAHKLFVEMS----------------------------- 206

Query: 261 TVNSLKRMMERGCNP-GMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMM 319
                     +GC P  +T+  +    C  G+     E     + GR  F+P   +YN +
Sbjct: 207 ---------NKGCPPDAVTYTTMVSSLCKAGKIDDARE-----LAGR--FKPSVPVYNAL 250

Query: 320 ISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNEN 379
           I   C       A+KLL EM+ NG  P++ +Y+ +   L     +  A  LF +M     
Sbjct: 251 IDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAFALFAQMFLRGC 310

Query: 380 VLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVK 439
             N       ++        Y A+  WK MI++ C       N L+ GLC    L EA++
Sbjct: 311 DANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQ 370

Query: 440 YAKGMAEKGI--QVTPFAL 456
               M   G    VT +++
Sbjct: 371 VCDQMQRSGCLPNVTTYSI 389



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/243 (27%), Positives = 109/243 (44%), Gaps = 42/243 (17%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           ++ TF  +     +  ++ +A+  + +M Q GC+ +V A N+L+  +C +G   +A Q  
Sbjct: 313 NIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVC 372

Query: 194 -RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
            ++      P+  TY+IL++G+ K  D+  A +T+  M I  G  P NV  Y   +  L 
Sbjct: 373 DQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRM-ISHGCRP-NVVTYTCMVDVLC 430

Query: 253 KGCDGIYETVNSL-KRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRP 311
           K  + +++  NSL ++M   GC P                                    
Sbjct: 431 K--NSMFDQANSLVEKMTLEGCTP------------------------------------ 452

Query: 312 DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLF 371
           +T  +N  I   C +     AMKLL+ M  +G  P+I TYN L + L +  K  EA GLF
Sbjct: 453 NTMTFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLF 512

Query: 372 NEM 374
            E+
Sbjct: 513 QEI 515


>gi|356531098|ref|XP_003534115.1| PREDICTED: pentatricopeptide repeat-containing protein At1g73400,
           mitochondrial-like [Glycine max]
          Length = 466

 Score =  104 bits (260), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 93/386 (24%), Positives = 170/386 (44%), Gaps = 31/386 (8%)

Query: 84  AVKFFRWSAYQLNDKHSPYAWNLVVDLLG----KNCLFDAMWDAIKSMKKENVLSLATFA 139
           A++FF W+ +Q +  H P A+N ++D+L     K   F  + D ++ MK+ N     T  
Sbjct: 40  ALRFFTWAGHQEDYSHEPCAYNDMMDILSSTRYKVKQFRIVCDVLEYMKRNN----RTMV 95

Query: 140 SVFSSYVVADRVKDAITTFDVMEQYGCKH--------DVFALNSLLSAICRDGKTIDAWQ 191
                 V+  +  +   T   M+++  K         ++ A N LL A+C+     DA  
Sbjct: 96  PAEVLLVILRKYTEKYLTH--MQKFAKKKRIRVKTQLEINAFNLLLDALCKCCLVEDAES 153

Query: 192 FLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVP---AYDSYL 248
             + +   +KP+ +TY IL+ GW + R+     K   EM IE+G  PDN     A D+Y 
Sbjct: 154 LYKKMRKTVKPNAETYNILVFGWCRVRNPTRGMKLLEEM-IELGHRPDNFTYNTAIDTYC 212

Query: 249 ITLLKGCDGIYETVNSLKRMMERGC---NPGMTFFKLAFEECLTGQNLRGAEFIWGAMVG 305
            T +     I E V+  + M  +G    +P    + +          +     + G M+ 
Sbjct: 213 KTGM-----ITEAVDLFEFMRTKGSTISSPTAKTYAIIIVALAQHDRMEDCFKLIGHMIS 267

Query: 306 RIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLW 365
             G  PD   Y  +I   C   +   A K L+EM      PDI TYN   + L   +K  
Sbjct: 268 S-GCLPDVTTYKEIIEGMCMCGKIDEAYKFLEEMGNKSYRPDIVTYNCFLKVLCDNKKSE 326

Query: 366 EASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLV 425
           +A  L+  M++   + + +     + ++ + DDP  A + W+ +    C   ++T  +++
Sbjct: 327 DALKLYGRMIELNCIPSVQTYNMLISMFFEMDDPDGAFETWQEIDNRGCRPDTDTYCVMI 386

Query: 426 AGLCDMHMLPEAVKYAKGMAEKGIQV 451
            GL + + + +A    + +  +G+++
Sbjct: 387 EGLFNCNKMEDACFLLEEVINEGVKL 412


>gi|224133408|ref|XP_002321560.1| predicted protein [Populus trichocarpa]
 gi|222868556|gb|EEF05687.1| predicted protein [Populus trichocarpa]
          Length = 491

 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 84/392 (21%), Positives = 169/392 (43%), Gaps = 12/392 (3%)

Query: 42  LCEIIANTPSP-TVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHS 100
           L  +I  + +P  +   L    I+ + + V  +LK  ++    A++FF   ++  +  H 
Sbjct: 41  LATLILTSSNPQALAQTLHSPTIQWTPQLVNTILKRLWNDGPKALQFFNLLSHHPSYSHH 100

Query: 101 PYAWNLVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASVFSSYVVADRVKDAITTFD 159
           P +++  +D+  +     ++   +  M+   +  +  TFA +   Y  A +   A+  F 
Sbjct: 101 PSSYDHAIDISARLRDSPSLRSLVYRMRSARLGPTPKTFAIIAERYASAGKPHRAVKVFL 160

Query: 160 VMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERD 219
            M Q+GC  D+ + N++L  +C+  +   A+   +V  G+ + D  +Y +++ GW   + 
Sbjct: 161 SMHQFGCFQDLQSFNTILDVLCKSKRVEMAYNLFKVFKGKFRADCVSYNVMVNGWCLIKR 220

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG---CDGIYETVNSLKRMMERGCNPG 276
              A +   EMV + G  P N+ +Y+    T+LKG      I E  +    M +R C   
Sbjct: 221 TNKALEMLKEMV-KRGLTP-NLTSYN----TMLKGYFRAGQINEAWDFFLEMKKRDCEID 274

Query: 277 MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLL 336
           +  +            ++ A  ++  MV + G  P    YN  I + C  +    A+ + 
Sbjct: 275 VITYTTVIHGFGVAGEIKRARKVFDTMVKK-GVLPSVATYNAFIQVLCKKDNVDNAIVIF 333

Query: 337 DEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDS 396
           +EMV  G  P+  TYN++   L    ++  A      M  +    N +     +R + D 
Sbjct: 334 EEMVVKGYVPNSITYNLVIRGLCHRGEMERAMEFMGRMKDDGCEPNVQTYNLVIRYFCDE 393

Query: 397 DDPYVAIKFWKYMIENHCSDLSETGNLLVAGL 428
            +   A+  ++ M    C    +T N+L++ +
Sbjct: 394 GEIDKALDLFQKMTSGDCLPNLDTYNILISAM 425



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 76/307 (24%), Positives = 135/307 (43%), Gaps = 17/307 (5%)

Query: 77  SYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLA 136
           S   P  AVK F  S +Q        ++N ++D+L K+   +  ++  K  K +      
Sbjct: 148 SAGKPHRAVKVF-LSMHQFGCFQDLQSFNTILDVLCKSKRVEMAYNLFKVFKGKFRADCV 206

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           ++  + + + +  R   A+     M + G   ++ + N++L    R G+  +AW F   +
Sbjct: 207 SYNVMVNGWCLIKRTNKALEMLKEMVKRGLTPNLTSYNTMLKGYFRAGQINEAWDFFLEM 266

Query: 197 DGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
             R  + D  TY  ++ G+    ++  A+K F  MV + G  P +V  Y++++  L K  
Sbjct: 267 KKRDCEIDVITYTTVIHGFGVAGEIKRARKVFDTMV-KKGVLP-SVATYNAFIQVLCKK- 323

Query: 256 DGIYETVNSLKRMMERGCNPGMTFFKLAFEE-CLTGQNLRGAEFIWGAMVGRI---GFRP 311
           D +   +   + M+ +G  P    + L     C  G+  R  EF+     GR+   G  P
Sbjct: 324 DNVDNAIVIFEEMVVKGYVPNSITYNLVIRGLCHRGEMERAMEFM-----GRMKDDGCEP 378

Query: 312 DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRK---LWEAS 368
           +   YN++I  +C   E   A+ L  +M      P++ TYNIL   +   +K   L  A 
Sbjct: 379 NVQTYNLVIRYFCDEGEIDKALDLFQKMTSGDCLPNLDTYNILISAMFVRKKSDDLLVAG 438

Query: 369 GLFNEMV 375
            L  EMV
Sbjct: 439 NLLIEMV 445


>gi|225427504|ref|XP_002263624.1| PREDICTED: pentatricopeptide repeat-containing protein At1g73400,
           mitochondrial-like [Vitis vinifera]
          Length = 709

 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 102/421 (24%), Positives = 187/421 (44%), Gaps = 15/421 (3%)

Query: 42  LCEIIANTPSPT--VEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKH 99
           L + IAN  +P   +E  LD   + ++ + V ++L   +     A +FF W+ +Q    H
Sbjct: 239 LYKAIANNANPESDMEKALDLVGVELTTDLVIEILGKIHFEEKMAFRFFMWAGHQDCYSH 298

Query: 100 SPYAWNLVVDLLG----KNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAI 155
            P A+N ++D+L     K   F  + D +  MK+ +  S+     +       ++    +
Sbjct: 299 EPRAYNEMIDILSSTKYKVKQFRIVCDMLDYMKRNDKKSVPVEVLLMILRKYTEKHLAHL 358

Query: 156 TTFDVMEQYGCKH--DVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEG 213
             F   ++   K   ++ ALN LL A+C+     DA    R V  ++KPD +TY IL  G
Sbjct: 359 HKFAKKKKIRVKTQPEINALNLLLDALCKCSLVEDAQAMFRRVKNKVKPDANTYNILFFG 418

Query: 214 WEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGC 273
           W + R+ +   +   EM IE+G  PD+   Y++ + +  K    + E     + M  +G 
Sbjct: 419 WCRVRNPSRGMRVLEEM-IEMGHTPDSF-TYNTAIDSFCKA-GMVTEATELFEFMRTKGS 475

Query: 274 ---NPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETG 330
              +P    + +     +          +   M+   G  PD   Y  +I   C + +  
Sbjct: 476 TMSSPTAKTYAIMILALVQSDRTEECFKLIKDMINS-GVLPDVSTYKQVIEGMCLAGKVE 534

Query: 331 AAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAV 390
            A K L+EM   G  PDI TYN   + L + +K  EA GL+  M++   V +       +
Sbjct: 535 EAYKFLEEMGNKGYRPDIVTYNCFLDVLCENKKSEEALGLYGRMIEAGCVPSVHTFNMLI 594

Query: 391 RVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQ 450
            ++ +  +P  A + W  M +  C+  ++T  +++ GL + + + +A      +  KGI+
Sbjct: 595 SMFFEIGEPDGAFETWHEMDKRGCARDTDTYCVMIEGLFNCNKMEDACFLLDEVVNKGIK 654

Query: 451 V 451
           +
Sbjct: 655 L 655


>gi|302809105|ref|XP_002986246.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
 gi|300146105|gb|EFJ12777.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
          Length = 725

 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 89/340 (26%), Positives = 157/340 (46%), Gaps = 7/340 (2%)

Query: 102 YAWNLVVDLLGK-NCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDV 160
           +++N V+    K N + +A+W   + + +     + ++ +V +     D+V +A    D 
Sbjct: 80  FSYNTVLHGFCKANRVENALWLLEQMVMRGCPPDVVSYTTVINGLCKLDQVDEACRVMDK 139

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERD 219
           M Q GC+ +V    +L+   CR G    A + +R +  R  +P+  TY  ++ G    R 
Sbjct: 140 MIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHGLCSGRK 199

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGM-T 278
           + +A + F EM  E G  P +V  Y + + +L+K    + +    ++ M+ +GC+P + T
Sbjct: 200 LDSALQLFKEME-ESGSCPPDVFTYSTIVDSLVKS-GKVDDACRLVEAMVSKGCSPNVVT 257

Query: 279 FFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDE 338
           +  L    C  G+ L  A  +   M  R G  P+   YN +I  +C       A  LL+E
Sbjct: 258 YSSLLHGLCKAGK-LDEATALLQRMT-RSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEE 315

Query: 339 MVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDD 398
           MV  G  P++ TY +L +   K  K  +A GL   MV+   V N     + + ++   D+
Sbjct: 316 MVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDE 375

Query: 399 PYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAV 438
              A +    MI+  C     + N ++AGLC    + E V
Sbjct: 376 VERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGV 415



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 81/340 (23%), Positives = 138/340 (40%), Gaps = 22/340 (6%)

Query: 136 ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDA-WQFLR 194
            T+ ++ +    +DR+ DAI   + M   G   +VF+ N++L   C+  +  +A W   +
Sbjct: 45  VTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQ 104

Query: 195 VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLK- 253
           +V     PD  +Y  ++ G  K   V  A +   +M I+ G  P NV  Y + +    + 
Sbjct: 105 MVMRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKM-IQRGCQP-NVITYGTLVDGFCRV 162

Query: 254 -GCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD 312
              DG  E V   ++M ERG  P    +        +G+ L  A  ++  M       PD
Sbjct: 163 GDLDGAVELV---RKMTERGYRPNAITYNNIMHGLCSGRKLDSALQLFKEMEESGSCPPD 219

Query: 313 THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFN 372
              Y+ ++     S +   A +L++ MV  G  P++ TY+ L   L K  KL EA+ L  
Sbjct: 220 VFTYSTIVDSLVKSGKVDDACRLVEAMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQ 279

Query: 373 EMVKNENVLNHENCRAAVRVYMDSDDPYV-------AIKFWKYMIENHCSDLSETGNLLV 425
            M ++        C   +  Y    D +        A    + M++  C     T  +L+
Sbjct: 280 RMTRS-------GCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLL 332

Query: 426 AGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIK 465
              C      +A+   + M EKG     F  + L  +  K
Sbjct: 333 DAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCK 372



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 77/295 (26%), Positives = 125/295 (42%), Gaps = 17/295 (5%)

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDV 220
           M + G K       S+L  +C  G+  DA    R +     PD+ TY  ++ G  K   +
Sbjct: 1   MNRKGLKAHAGVHKSILRGLCDAGQCSDAVLHFREMSKTCPPDSVTYNTMINGLSKSDRL 60

Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFF 280
            +A +   EMV + G+ P NV +Y++ L    K  + +   +  L++M+ RGC P +  +
Sbjct: 61  DDAIRLLEEMV-DNGFAP-NVFSYNTVLHGFCKA-NRVENALWLLEQMVMRGCPPDVVSY 117

Query: 281 KLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMV 340
                       +  A  +   M+ R G +P+   Y  ++  +C   +   A++L+ +M 
Sbjct: 118 TTVINGLCKLDQVDEACRVMDKMIQR-GCQPNVITYGTLVDGFCRVGDLDGAVELVRKMT 176

Query: 341 YNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPY 400
             G  P+  TYN +   L  GRKL  A  LF EM ++       +C   V  Y    D  
Sbjct: 177 ERGYRPNAITYNNIMHGLCSGRKLDSALQLFKEMEES------GSCPPDVFTYSTIVDSL 230

Query: 401 V-------AIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448
           V       A +  + M+   CS    T + L+ GLC    L EA    + M   G
Sbjct: 231 VKSGKVDDACRLVEAMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSG 285



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 75/364 (20%), Positives = 160/364 (43%), Gaps = 10/364 (2%)

Query: 102 YAWNLVVDLLGKNCLFDAMWDAIKSM-KKENVLSLATFASVFSSYVVADRVKDAITTFDV 160
           + +N ++D+  K    +     + SM +K  V ++ ++ +V +    A +V + +   + 
Sbjct: 361 FTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQ 420

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV-DGRIKPDNDTYAILLEGWEKERD 219
           M    C  D+   N+++ A+C+  +   A++   ++ +    P+  TY  L+ G  K R 
Sbjct: 421 MLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRR 480

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG--CDGIYETVNSLKRMMERGCNPGM 277
              A+    EM  + G  PD +  Y++ +  L K    D  Y+      +M+  G  P  
Sbjct: 481 FDQAEYLLREMTRKQGCSPD-IITYNTVIDGLCKSKRVDRAYKL---FLQMLSDGLAPDD 536

Query: 278 TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLD 337
             + +        + +  A  +   M+ + GF P    Y  +I  +C +     A+++L 
Sbjct: 537 VTYSIVISSLCKWRFMDEANNVLELML-KNGFDPGAITYGTLIDGFCKTGNLDKALEILQ 595

Query: 338 EMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSD 397
            ++  G++PD+ T++I  ++L K  +L +A  L   M++   V +       ++ + D+ 
Sbjct: 596 LLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGFCDAS 655

Query: 398 DPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAV-KYAKGMAEKGIQVTPFAL 456
               A+  ++ M +  C   + T   LV  L D     + + + +K M + G ++     
Sbjct: 656 RTEDAVDLFEVMRQCGCEPDNATYTTLVGHLVDKKSYKDLLAEVSKSMVDTGFKLNHELS 715

Query: 457 SKLK 460
           SKL+
Sbjct: 716 SKLE 719



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 71/280 (25%), Positives = 117/280 (41%), Gaps = 39/280 (13%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           ++ T+ ++   +    R+ +A    + M   GC+ +V     LL A C+ GK  DA   +
Sbjct: 289 NIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLV 348

Query: 194 RV-VDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
            V V+    P+  TY  LL+ + K+ +V  A +    M I+ G  P NV +Y++ +  L 
Sbjct: 349 EVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSM-IQKGCVP-NVVSYNTVIAGLC 406

Query: 253 KGCDGIYETVNSLKRMM-----------------------------------ERGCNPGM 277
           K    ++E V  L++M+                                   E GC P +
Sbjct: 407 KA-TKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNL 465

Query: 278 TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLD 337
             +          +    AE++   M  + G  PD   YN +I   C S     A KL  
Sbjct: 466 VTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFL 525

Query: 338 EMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKN 377
           +M+ +G  PD  TY+I+   L K R + EA+ +   M+KN
Sbjct: 526 QMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKN 565



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 87/211 (41%), Gaps = 18/211 (8%)

Query: 267 RMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYS 326
           R M + C P    +            L  A  +   MV   GF P+   YN ++  +C +
Sbjct: 34  REMSKTCPPDSVTYNTMINGLSKSDRLDDAIRLLEEMVDN-GFAPNVFSYNTVLHGFCKA 92

Query: 327 NETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENC 386
           N    A+ LL++MV  G  PD+ +Y  +   L K  ++ EA  + ++M++         C
Sbjct: 93  NRVENALWLLEQMVMRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQ-------RGC 145

Query: 387 RAAVRVYMDSDDPYV-------AIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVK 439
           +  V  Y    D +        A++  + M E      + T N ++ GLC    L  A++
Sbjct: 146 QPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHGLCSGRKLDSALQ 205

Query: 440 YAKGMAEKGIQVTP--FALSKLKQILIKARK 468
             K M E G    P  F  S +   L+K+ K
Sbjct: 206 LFKEMEESG-SCPPDVFTYSTIVDSLVKSGK 235


>gi|147782978|emb|CAN70810.1| hypothetical protein VITISV_034914 [Vitis vinifera]
          Length = 708

 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 102/421 (24%), Positives = 187/421 (44%), Gaps = 15/421 (3%)

Query: 42  LCEIIANTPSPT--VEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKH 99
           L + IAN  +P   +E  LD   + ++ + V ++L   +     A +FF W+ +Q    H
Sbjct: 212 LYKAIANNANPESDMEKALDLVGVELTTDLVIEILGKIHFEEKMAFRFFMWAGHQDCYSH 271

Query: 100 SPYAWNLVVDLLG----KNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAI 155
            P A+N ++D+L     K   F  + D +  MK+ +  S+     +       ++    +
Sbjct: 272 EPRAYNEMIDILSSTKYKVKQFRIVCDMLDYMKRNDKKSVPVEVLLMILRKYTEKHLAHL 331

Query: 156 TTFDVMEQYGCKH--DVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEG 213
             F   ++   K   ++ ALN LL A+C+     DA    R V  ++KPD +TY IL  G
Sbjct: 332 HKFAKKKKIRVKTQPEINALNLLLDALCKCSLVEDAQAMFRRVKNKVKPDANTYNILFFG 391

Query: 214 WEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGC 273
           W + R+ +   +   EM IE+G  PD+   Y++ + +  K    + E     + M  +G 
Sbjct: 392 WCRVRNPSRGMRVLEEM-IEMGHTPDSF-TYNTAIDSFCKA-GMVTEATELFEFMRTKGS 448

Query: 274 ---NPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETG 330
              +P    + +     +          +   M+   G  PD   Y  +I   C + +  
Sbjct: 449 TMSSPTAKTYAIMILALVQSDRTEECFKLIKDMINS-GVLPDVSTYKQVIEGMCLAGKVE 507

Query: 331 AAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAV 390
            A K L+EM   G  PDI TYN   + L + +K  EA GL+  M++   V +       +
Sbjct: 508 EAYKFLEEMGNKGYRPDIVTYNCFLDVLCENKKSEEALGLYGRMIEAGCVPSVHTFNMLI 567

Query: 391 RVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQ 450
            ++ +  +P  A + W  M +  C+  ++T  +++ GL + + + +A      +  KGI+
Sbjct: 568 SMFFEIGEPDGAFETWHEMDKRGCARDTDTYCVMIEGLFNCNKMEDACFLLDEVINKGIK 627

Query: 451 V 451
           +
Sbjct: 628 L 628


>gi|357515141|ref|XP_003627859.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355521881|gb|AET02335.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 731

 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 106/438 (24%), Positives = 183/438 (41%), Gaps = 42/438 (9%)

Query: 39  IKTLCEIIA-----NTPSPTVEDVLDKTLIRVSQETVEQVLKFSYSH---PGPAVKFFRW 90
           I+++C II      N   P     L  T       T+ QV+     H   P     FF+W
Sbjct: 15  IESVCAIIVKGDWNNLLKPKTASTLTST-------TIHQVILHLKQHRYEPFFIFHFFKW 67

Query: 91  SAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFAS---------- 140
           +    +  HS ++   ++ +L K+  F      +  M +  +LS  +  +          
Sbjct: 68  AQSIPHYTHSLHSSWSMIHMLTKHRHFKTAQQVLDKMAQREILSSPSVLTSLVRIHDDPE 127

Query: 141 --------VFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ- 191
                   +   Y  +    DA+  F+ M     K  + A   L++++ +DG T   W+ 
Sbjct: 128 VNSHVLSWIVIHYAKSKMTHDAVQVFEQMSLCNLKPHLHACTVLMNSLLKDGITSMVWKV 187

Query: 192 FLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITL 251
           + R+V   + P+   Y  L+    K RDV  A+    EM ++ G  PD +  Y++ LI L
Sbjct: 188 YKRMVQDGVVPNIYVYNCLIHACSKSRDVERAEFILNEMEVK-GVVPD-IFTYNT-LIAL 244

Query: 252 LKGCDGIYETVNSLKRMMERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFR 310
                  YE ++   +M   G N  + ++  L +  C  G+ +R A  ++G +   I   
Sbjct: 245 YCKKGLHYEALSVQDKMEREGINLDIVSYNSLIYGFCKEGK-MREAMRMFGEIKDAI--- 300

Query: 311 PDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGL 370
           P+   Y  +I  YC +NE   A++L + MV  G +P + TYN +   L    ++ +A+ L
Sbjct: 301 PNHVTYTTLIDGYCKANEFEEALRLREMMVAKGLYPGVVTYNSILRKLCSDGRIRDANKL 360

Query: 371 FNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCD 430
            +EM + +   +   C   +  Y    D   A+KF   M+E   +  S T   L+ G C 
Sbjct: 361 LHEMSERKVQADSVTCNTLINAYCKIGDLNSALKFKTKMLEAGLTPNSFTYKALIHGFCK 420

Query: 431 MHMLPEAVKYAKGMAEKG 448
              L  A +   GM + G
Sbjct: 421 TSELESAKELLFGMLDAG 438



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 66/275 (24%), Positives = 109/275 (39%), Gaps = 44/275 (16%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           T+ ++ + Y       +A++  D ME+ G   D+ + NSL+   C++GK  +A +    +
Sbjct: 237 TYNTLIALYCKKGLHYEALSVQDKMEREGINLDIVSYNSLIYGFCKEGKMREAMRMFGEI 296

Query: 197 DGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD 256
              I P++ TY  L++G+ K  +   A +   EM++  G  P  V  Y+S L  L    D
Sbjct: 297 KDAI-PNHVTYTTLIDGYCKANEFEEALR-LREMMVAKGLYP-GVVTYNSILRKLCS--D 351

Query: 257 GIYETVNSL------------------------------------KRMMERGCNP-GMTF 279
           G     N L                                     +M+E G  P   T+
Sbjct: 352 GRIRDANKLLHEMSERKVQADSVTCNTLINAYCKIGDLNSALKFKTKMLEAGLTPNSFTY 411

Query: 280 FKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEM 339
             L    C T +     E ++G +    GF P+   Y+ ++  YC  + T A + L DE 
Sbjct: 412 KALIHGFCKTSELESAKELLFGMLDA--GFSPNYRTYSWIVDSYCKKDNTDAVLALPDEF 469

Query: 340 VYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
           +  G   +I  Y  L   L K  ++  A  L   M
Sbjct: 470 LSKGFCLNISLYRALIRRLCKIERIECAEKLLYHM 504



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/201 (27%), Positives = 79/201 (39%), Gaps = 41/201 (20%)

Query: 250 TLLKGCDGIYETV-NSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIG 308
           +LLK  DGI   V    KRM++ G  P +  +      C   +++  AEFI   M  + G
Sbjct: 174 SLLK--DGITSMVWKVYKRMVQDGVVPNIYVYNCLIHACSKSRDVERAEFILNEMEVK-G 230

Query: 309 FRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEAS 368
             PD   YN +I+LYC       A+ + D+M   G   DI +YN L     K  K+ EA 
Sbjct: 231 VVPDIFTYNTLIALYCKKGLHYEALSVQDKMEREGINLDIVSYNSLIYGFCKEGKMREAM 290

Query: 369 GLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGL 428
            +F E+                                K  I NH      T   L+ G 
Sbjct: 291 RMFGEI--------------------------------KDAIPNHV-----TYTTLIDGY 313

Query: 429 CDMHMLPEAVKYAKGMAEKGI 449
           C  +   EA++  + M  KG+
Sbjct: 314 CKANEFEEALRLREMMVAKGL 334


>gi|224139118|ref|XP_002326772.1| predicted protein [Populus trichocarpa]
 gi|222834094|gb|EEE72571.1| predicted protein [Populus trichocarpa]
          Length = 512

 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 106/445 (23%), Positives = 188/445 (42%), Gaps = 25/445 (5%)

Query: 39  IKTLCEIIANTP------SPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSA 92
           ++ +  II + P       PT+   +  TL+  +   VE VL   ++     +K   +  
Sbjct: 40  VERIARIINDHPFPNQPLHPTLTHHIPPTLLTTA--FVENVLGRLFAAHSNGLKALEFFK 97

Query: 93  YQLNDKH----SPYAWNLVVDLLGKNCLFDAMWDAIKSMKKEN--VLSLATFASVFSSYV 146
           Y LN++     SP ++   + +L +   FD  WD +  + K +  +L+L + + +     
Sbjct: 98  YSLNNQTHFSPSPDSFEKTLHILARMRYFDKAWDLMVEIGKTHPFLLTLKSMSIMLCKIA 157

Query: 147 VADRVKDAITTFDVMEQ---YGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPD 203
                ++ +  F+ ME+    G K  V   N LL A C   K  +A      +  R  P+
Sbjct: 158 KFRSYEETLDAFEKMEKRVFVGRKFGVEEFNVLLRAFCTVRKLKEAKSVFVKMHERFPPN 217

Query: 204 NDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD-GIYETV 262
             T  ILL G+++ RDV   +  + EMV + G+ P +     SY I +   C  G +   
Sbjct: 218 VKTMNILLLGFKESRDVTAMELFYHEMV-KRGFKPSS----SSYGIRIDAYCKKGYFADA 272

Query: 263 NSLKRMMERG-CNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMIS 321
             +   MER  C P +             +N   A  ++  +  R   + DT  YN +IS
Sbjct: 273 LRIFEEMERANCLPTLETVTTLIHGAGVARNAMKARELFDEIPKR-NLQADTGAYNALIS 331

Query: 322 LYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVL 381
                 E  +A++L+DEM  N    D  TY+ +F  L+K   +     L+++M+    V 
Sbjct: 332 SLVKCREVKSAIQLMDEMEKNNIHYDDMTYHTMFLGLMKSGSIEGVCELYHKMIDRNFVP 391

Query: 382 NHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYA 441
                   ++ +  +    + +  W Y++           +LLV GLC      EA K +
Sbjct: 392 KTRTVVMLMKFFCVNSQIDLGLNLWGYLVGKGYCPHHHALDLLVTGLCSRGRSHEAFKCS 451

Query: 442 KGMAEKGIQVTPFALSKLKQILIKA 466
           K   E+GI V+      L++ L+++
Sbjct: 452 KQSLERGIHVSEAVYGMLERFLLQS 476


>gi|449511869|ref|XP_004164076.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Cucumis sativus]
          Length = 660

 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 106/400 (26%), Positives = 171/400 (42%), Gaps = 29/400 (7%)

Query: 84  AVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVF 142
           A+K F +   +   K +   +N ++D L     F  +     +MKK+ ++ ++ T+  + 
Sbjct: 128 ALKMF-YRIGEFGCKPTVRIYNHLLDALLSENKFQMINPLYTNMKKDGLIPNVFTYNILL 186

Query: 143 SSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKP 202
            +    DRV  A   F  M   GC  D     +++S++C+ GK  DA    R + GR KP
Sbjct: 187 KALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDA----RELAGRFKP 242

Query: 203 DNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETV 262
               Y  L++G  KE  +  A K  GEM ++ G DP NV +Y   + +L     G  E  
Sbjct: 243 SVPVYNALIDGMCKEGRIEVAIKLLGEM-MDNGVDP-NVVSYSCIINSLC--VSGNVELA 298

Query: 263 NSL-KRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMIS 321
            +L  +M  RGC+  +  F    + C     L  A  +W  M+ + G  P+   YN +I 
Sbjct: 299 FALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMI-QDGCEPNVVAYNTLIH 357

Query: 322 LYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVL 381
             C +     A+++ D+M  +G  P++ TY+IL +   K   L  AS  +N M+ +    
Sbjct: 358 GLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISH---- 413

Query: 382 NHENCRAAVRVYMDSDDPYV-------AIKFWKYMIENHCSDLSETGNLLVAGLCDMHML 434
               CR  V  Y    D          A    + M    C+  + T N  + GLC    +
Sbjct: 414 ---GCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTITFNTFIKGLCGNGRV 470

Query: 435 PEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEE 474
             A+K  + M   G        ++L   L +  K   YEE
Sbjct: 471 EWAMKLLERMQGHGCLPNITTYNELLDALFRMNK---YEE 507



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 90/379 (23%), Positives = 145/379 (38%), Gaps = 52/379 (13%)

Query: 84  AVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLA-TFASVF 142
            + FF   A     +H+   + ++++ LG+ C  D +   ++ MK + +      F  + 
Sbjct: 57  VLGFFSAIANSNAFQHTASTYRVMIERLGRECEMDMVQYILQQMKMDGINCCEDLFICII 116

Query: 143 SSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGK--TIDAWQFLRVVDGRI 200
           + Y      + A+  F  + ++GCK  V   N LL A+  + K   I+        DG I
Sbjct: 117 NGYKRVGSAEQALKMFYRIGEFGCKPTVRIYNHLLDALLSENKFQMINPLYTNMKKDGLI 176

Query: 201 KPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYE 260
            P+  TY ILL+   K   V  A K F EM                              
Sbjct: 177 -PNVFTYNILLKALCKNDRVDAAHKLFVEMS----------------------------- 206

Query: 261 TVNSLKRMMERGCNP-GMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMM 319
                     +GC P  +T+  +    C  G+     E     + GR  F+P   +YN +
Sbjct: 207 ---------NKGCPPDAVTYTTMVSSLCKAGKIDDARE-----LAGR--FKPSVPVYNAL 250

Query: 320 ISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNEN 379
           I   C       A+KLL EM+ NG  P++ +Y+ +   L     +  A  LF +M     
Sbjct: 251 IDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAFALFAQMFLRGC 310

Query: 380 VLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVK 439
             N       ++        Y A+  WK MI++ C       N L+ GLC    L EA++
Sbjct: 311 DANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQ 370

Query: 440 YAKGMAEKGI--QVTPFAL 456
               M   G    VT +++
Sbjct: 371 VCDQMQRSGCLPNVTTYSI 389



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 66/243 (27%), Positives = 109/243 (44%), Gaps = 42/243 (17%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           ++ TF  +     +  ++ +A+  + +M Q GC+ +V A N+L+  +C +G   +A Q  
Sbjct: 313 NIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVC 372

Query: 194 -RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
            ++      P+  TY+IL++G+ K  D+  A +T+  M I  G  P NV  Y   +  L 
Sbjct: 373 DQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRM-ISHGCRP-NVVTYTCMVDVLC 430

Query: 253 KGCDGIYETVNSL-KRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRP 311
           K  + +++  NSL ++M   GC P                                    
Sbjct: 431 K--NSMFDQANSLVEKMTLEGCTP------------------------------------ 452

Query: 312 DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLF 371
           +T  +N  I   C +     AMKLL+ M  +G  P+I TYN L + L +  K  EA GLF
Sbjct: 453 NTITFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLF 512

Query: 372 NEM 374
            E+
Sbjct: 513 QEI 515


>gi|255547572|ref|XP_002514843.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545894|gb|EEF47397.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 594

 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 96/365 (26%), Positives = 160/365 (43%), Gaps = 14/365 (3%)

Query: 93  YQLNDKHSP--YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL----SLATFASVFSSYV 146
           Y ++  + P  Y   ++V+ L   C       AI  MKK   L     + +++ +  S  
Sbjct: 199 YIMSRGYQPTVYTHTMIVNGL---CKIGKTSAAIVWMKKMVELDCEPEVVSYSIIIDSLC 255

Query: 147 VADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDA-WQFLRVVDGRIKPDND 205
               V +A+  F  M   G    V   NSL+  +C  G+   A   F  +++  +KPD  
Sbjct: 256 KNRLVNEAVDLFYHMRSIGISPTVVTYNSLIYGMCNSGQWKQASILFKEMLEWNMKPDVV 315

Query: 206 TYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSL 265
           T++IL++   KE  V  A   FG+M I++  +PD V  Y S +  + K      E+   L
Sbjct: 316 TFSILVDALCKEGVVLEALSVFGKM-IQIAMEPDIV-TYSSLIHGVCKS-SLWKESSTLL 372

Query: 266 KRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCY 325
             M+ R   P +  F +  +       +  A+ I   M+ R G RP+   YN ++  YC 
Sbjct: 373 NEMLSRNIRPDVVTFSIWVDVFCKKGMVSEAQSIINLMIER-GLRPNVVTYNSLMDGYCL 431

Query: 326 SNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHEN 385
            ++   A K+ D MV  G  PD+ +YNIL +   K  ++ EA  LF+EM       N   
Sbjct: 432 HSQMDEARKVFDIMVNKGCAPDVLSYNILIKGYCKSERIDEAKQLFDEMSHKGLTPNSIT 491

Query: 386 CRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMA 445
               +     +  PY A + +K M  + C     T + L++G C    L EA+   + + 
Sbjct: 492 HTTLISGLCQAGRPYAAKELFKKMGSHGCPPDLITYSTLLSGFCKHGHLDEALALFEALK 551

Query: 446 EKGIQ 450
           +  ++
Sbjct: 552 KSQLK 556



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 84/355 (23%), Positives = 162/355 (45%), Gaps = 15/355 (4%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           S+ TF ++ +   +  R+ +A+   D +   G +  V+    +++ +C+ GKT  A  ++
Sbjct: 173 SIITFNTLINGLCIEGRIVEAMEQLDYIMSRGYQPTVYTHTMIVNGLCKIGKTSAAIVWM 232

Query: 194 R-VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
           + +V+   +P+  +Y+I+++   K R V  A   F  M   +G  P  V  Y+S +  + 
Sbjct: 233 KKMVELDCEPEVVSYSIIIDSLCKNRLVNEAVDLFYHMR-SIGISP-TVVTYNSLIYGMC 290

Query: 253 KGCDGIYETVNSL-KRMMERGCNPGMTFFKLAFEE-CLTGQNLRGAEFIWGAMVGRIGFR 310
               G ++  + L K M+E    P +  F +  +  C  G  L     ++G M+ +I   
Sbjct: 291 N--SGQWKQASILFKEMLEWNMKPDVVTFSILVDALCKEGVVLEALS-VFGKMI-QIAME 346

Query: 311 PDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGL 370
           PD   Y+ +I   C S+    +  LL+EM+     PD+ T++I  +   K   + EA  +
Sbjct: 347 PDIVTYSSLIHGVCKSSLWKESSTLLNEMLSRNIRPDVVTFSIWVDVFCKKGMVSEAQSI 406

Query: 371 FNEMVKN---ENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAG 427
            N M++     NV+ + +      ++   D+   A K +  M+   C+    + N+L+ G
Sbjct: 407 INLMIERGLRPNVVTYNSLMDGYCLHSQMDE---ARKVFDIMVNKGCAPDVLSYNILIKG 463

Query: 428 LCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKCKAH 482
            C    + EA +    M+ KG+       + L   L +A +    +EL KK  +H
Sbjct: 464 YCKSERIDEAKQLFDEMSHKGLTPNSITHTTLISGLCQAGRPYAAKELFKKMGSH 518



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 80/323 (24%), Positives = 135/323 (41%), Gaps = 43/323 (13%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVM 161
           ++++++D L KN L +   D    M+   +  ++ T+ S+      + + K A   F  M
Sbjct: 246 SYSIIIDSLCKNRLVNEAVDLFYHMRSIGISPTVVTYNSLIYGMCNSGQWKQASILFKEM 305

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDV 220
            ++  K DV   + L+ A+C++G  ++A   F +++   ++PD  TY+ L+ G  K    
Sbjct: 306 LEWNMKPDVVTFSILVDALCKEGVVLEALSVFGKMIQIAMEPDIVTYSSLIHGVCKSSLW 365

Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGM-TF 279
             +     EM +     PD V       +   KG   + E  + +  M+ERG  P + T+
Sbjct: 366 KESSTLLNEM-LSRNIRPDVVTFSIWVDVFCKKGM--VSEAQSIINLMIERGLRPNVVTY 422

Query: 280 FKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEM 339
             L    CL  Q +  A  ++  MV + G  PD   YN++I  YC S     A +L DEM
Sbjct: 423 NSLMDGYCLHSQ-MDEARKVFDIMVNK-GCAPDVLSYNILIKGYCKSERIDEAKQLFDEM 480

Query: 340 VY-----------------------------------NGAFPDIQTYNILFEFLVKGRKL 364
            +                                   +G  PD+ TY+ L     K   L
Sbjct: 481 SHKGLTPNSITHTTLISGLCQAGRPYAAKELFKKMGSHGCPPDLITYSTLLSGFCKHGHL 540

Query: 365 WEASGLFNEMVKNENVLNHENCR 387
            EA  LF  + K++   NH  C+
Sbjct: 541 DEALALFEALKKSQLKPNHVICK 563



 Score = 44.3 bits (103), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 1/98 (1%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           T  ++ S    A R   A   F  M  +GC  D+   ++LLS  C+ G   +A      +
Sbjct: 491 THTTLISGLCQAGRPYAAKELFKKMGSHGCPPDLITYSTLLSGFCKHGHLDEALALFEAL 550

Query: 197 D-GRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIE 233
              ++KP++    ILL G  K   + +AK+ F  + IE
Sbjct: 551 KKSQLKPNHVICKILLGGMCKAGKLEDAKELFSSLSIE 588



 Score = 42.7 bits (99), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 66/133 (49%), Gaps = 7/133 (5%)

Query: 247 YLITLLKGCDGIYETV----NSLKRMMERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWG 301
           Y +T+L  C      V    + L ++ + G  P + TF  L    C+ G+ +   E +  
Sbjct: 140 YTLTILINCLCHLHLVGLGFSVLGKIFKLGFKPSIITFNTLINGLCIEGRIVEAMEQL-D 198

Query: 302 AMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKG 361
            ++ R G++P  + + M+++  C   +T AA+  + +MV     P++ +Y+I+ + L K 
Sbjct: 199 YIMSR-GYQPTVYTHTMIVNGLCKIGKTSAAIVWMKKMVELDCEPEVVSYSIIIDSLCKN 257

Query: 362 RKLWEASGLFNEM 374
           R + EA  LF  M
Sbjct: 258 RLVNEAVDLFYHM 270



 Score = 42.4 bits (98), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 80/192 (41%), Gaps = 8/192 (4%)

Query: 259 YETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNM 318
           Y++V S+ R ME        +       CL   +L G  F     + ++GF+P    +N 
Sbjct: 120 YDSVVSIYRKMEFFGVSCSVYTLTILINCLCHLHLVGLGFSVLGKIFKLGFKPSIITFNT 179

Query: 319 MISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNE 378
           +I+  C       AM+ LD ++  G  P + T+ ++   L K  K   A     +MV+  
Sbjct: 180 LINGLCIEGRIVEAMEQLDYIMSRGYQPTVYTHTMIVNGLCKIGKTSAAIVWMKKMVE-- 237

Query: 379 NVLNHENCRAAVRVYMDS--DDPYV--AIKFWKYMIENHCSDLSETGNLLVAGLCDMHML 434
             L+ E    +  + +DS   +  V  A+  + +M     S    T N L+ G+C+    
Sbjct: 238 --LDCEPEVVSYSIIIDSLCKNRLVNEAVDLFYHMRSIGISPTVVTYNSLIYGMCNSGQW 295

Query: 435 PEAVKYAKGMAE 446
            +A    K M E
Sbjct: 296 KQASILFKEMLE 307


>gi|297816676|ref|XP_002876221.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297322059|gb|EFH52480.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 754

 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 94/350 (26%), Positives = 158/350 (45%), Gaps = 9/350 (2%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RV 195
           TF ++ +    A  VK AI   DVM Q G   DV+  NS++S +C+ G+  +A +FL ++
Sbjct: 297 TFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEFLDQM 356

Query: 196 VDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
           +     P+  TY  L+    KE  V  A +    ++   G  PD V  ++S LI  L   
Sbjct: 357 ITRDCSPNTVTYNTLISTLCKENQVEEATE-LARVLTSKGILPD-VCTFNS-LIQGLCLT 413

Query: 256 DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHM 315
                 +   + M  +GC P    + +  +   +   L  A  +   M    G       
Sbjct: 414 RNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQM-ELSGCARSVIT 472

Query: 316 YNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
           YN +I  +C +N+   A ++ DEM  +G   +  TYN L + L K R++ +AS L ++M+
Sbjct: 473 YNTLIDGFCKANKIREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDASQLMDQMI 532

Query: 376 KNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLP 435
                 +     + +  +    D   A    + M  N C     T   L++GLC    + 
Sbjct: 533 MEGQKPDKFTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVE 592

Query: 436 EAVKYAKGMAEKGIQVTPFALSKLKQILIKARK--EAV--YEELLKKCKA 481
            A K  + +  KGI +TP A + + Q L + RK  EA+  + E+L++ +A
Sbjct: 593 VASKLLRSIQMKGIALTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEA 642



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 87/333 (26%), Positives = 144/333 (43%), Gaps = 22/333 (6%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           TF ++   Y+    +  A+   + M ++GC     ++N ++   C++G+  DA  F++ +
Sbjct: 226 TFTTIMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEM 285

Query: 197 DGR--IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG 254
             +    PD  T+  L+ G  K   V +A +    M+ E G+DPD V  Y+S +  L K 
Sbjct: 286 SNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQE-GYDPD-VYTYNSVISGLCKL 343

Query: 255 CDGIYETVNSLKRMMERGCNPG-MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDT 313
            + + E V  L +M+ R C+P  +T+  L    C   Q     E     ++   G  PD 
Sbjct: 344 GE-VKEAVEFLDQMITRDCSPNTVTYNTLISTLCKENQVEEATEL--ARVLTSKGILPDV 400

Query: 314 HMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNE 373
             +N +I   C +     AM+L +EM   G  PD  TYN+L + L    KL EA  +  +
Sbjct: 401 CTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQ 460

Query: 374 MVKNENVLNHENCRAAVRVYMDSDDPYV-------AIKFWKYMIENHCSDLSETGNLLVA 426
           M           C  +V  Y    D +        A + +  M  +  S  S T N L+ 
Sbjct: 461 M-------ELSGCARSVITYNTLIDGFCKANKIREAEEIFDEMEVHGVSRNSVTYNTLID 513

Query: 427 GLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKL 459
           GLC    + +A +    M  +G +   F  + L
Sbjct: 514 GLCKSRRVEDASQLMDQMIMEGQKPDKFTYNSL 546



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 85/354 (24%), Positives = 144/354 (40%), Gaps = 16/354 (4%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVM 161
            +N ++  L K    +   +  + +  + +L  + TF S+     +    + A+  F+ M
Sbjct: 367 TYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEM 426

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVD-GRIKPDNDTYAILLEGWEKERDV 220
              GC+ D F  N L+ ++C  GK  +A   L+ ++         TY  L++G+ K   +
Sbjct: 427 RSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKI 486

Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFF 280
             A++ F EM  EV     N   Y++ +  L K        V    ++M++    G    
Sbjct: 487 REAEEIFDEM--EVHGVSRNSVTYNTLIDGLCKS-----RRVEDASQLMDQMIMEGQKPD 539

Query: 281 KLAFEECLT----GQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLL 336
           K  +   LT    G +++ A  I  AM    G  PD   Y  +IS  C +     A KLL
Sbjct: 540 KFTYNSLLTHFCRGGDIKKAADIVQAMTSN-GCEPDIVTYGTLISGLCKAGRVEVASKLL 598

Query: 337 DEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV-KNENVLNHENCRAAVRVYMD 395
             +   G       YN + + L + RK  EA  LF EM+ +NE   +  + R   R   +
Sbjct: 599 RSIQMKGIALTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAAPDAVSYRIVFRGLCN 658

Query: 396 SDDPYV-AIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448
              P   A+ F   ++E        +  +L  GL  + M    VK    + +K 
Sbjct: 659 GGGPIREAVDFLVELLEKGFVPEFSSLYMLAEGLLTLSMEETLVKLVNMVMQKA 712



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 82/325 (25%), Positives = 141/325 (43%), Gaps = 8/325 (2%)

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDG-RIKPDNDTYAILLEGWEKERD 219
           M  +G K DV   N L+ A+CR  +   A   L  +    + PD  T+  +++G+ +E D
Sbjct: 180 MSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTIMQGYIEEGD 239

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMER-GCNPGM- 277
           +  A +   +MV E G    NV    + ++        + + +N ++ M  + G  P   
Sbjct: 240 LDGALRIREQMV-EFGCSWSNVSV--NVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQY 296

Query: 278 TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLD 337
           TF  L    C  G +++ A  I   M+   G+ PD + YN +IS  C   E   A++ LD
Sbjct: 297 TFNTLVNGLCKAG-HVKHAIEIMDVMLQE-GYDPDVYTYNSVISGLCKLGEVKEAVEFLD 354

Query: 338 EMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSD 397
           +M+     P+  TYN L   L K  ++ EA+ L   +     + +     + ++    + 
Sbjct: 355 QMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTR 414

Query: 398 DPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALS 457
           +  VA++ ++ M    C     T N+L+  LC    L EA+   K M   G   +    +
Sbjct: 415 NHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYN 474

Query: 458 KLKQILIKARKEAVYEELLKKCKAH 482
            L     KA K    EE+  + + H
Sbjct: 475 TLIDGFCKANKIREAEEIFDEMEVH 499



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 59/265 (22%), Positives = 108/265 (40%), Gaps = 46/265 (17%)

Query: 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDV 160
           + +N+++D L      D   + +K M+      S+ T+ ++   +  A+++++A   FD 
Sbjct: 436 FTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKIREAEEIFDE 495

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL--RVVDGRIKPDNDTYAILLEGWEKER 218
           ME +G   +    N+L+  +C+  +  DA Q +   +++G+ KPD  TY  LL  + +  
Sbjct: 496 MEVHGVSRNSVTYNTLIDGLCKSRRVEDASQLMDQMIMEGQ-KPDKFTYNSLLTHFCRGG 554

Query: 219 DVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGM- 277
           D+  A                                       + ++ M   GC P + 
Sbjct: 555 DIKKA--------------------------------------ADIVQAMTSNGCEPDIV 576

Query: 278 TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLD 337
           T+  L    C  G+    ++ +    +  I   P  H YN +I       +T  A+ L  
Sbjct: 577 TYGTLISGLCKAGRVEVASKLLRSIQMKGIALTP--HAYNPVIQGLFRKRKTTEAINLFR 634

Query: 338 EMV-YNGAFPDIQTYNILFEFLVKG 361
           EM+  N A PD  +Y I+F  L  G
Sbjct: 635 EMLEQNEAAPDAVSYRIVFRGLCNG 659



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 58/243 (23%), Positives = 109/243 (44%), Gaps = 12/243 (4%)

Query: 210 LLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPA-YDSYLITLLKGCDGIYETVNS-LKR 267
           LL+    + D + A + F     +  + P+  PA Y+  L+ L  G  G ++ +   L+ 
Sbjct: 53  LLDSLRSQADDSAALRLFNLASKKPNFSPE--PALYEEILLRL--GRSGSFDDMRKILED 108

Query: 268 MMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGA---MVGRIGFRPDTHMYNMMISLYC 324
           M   GC  G + F +  E   +       + I G    M+   G +PDTH YN M++L  
Sbjct: 109 MKNSGCEMGTSPFLILIE---SYAQFELQDEILGVVHWMIDDFGLKPDTHFYNRMLNLLV 165

Query: 325 YSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHE 384
             N          +M   G  PD+ T+N+L + L +  +L  A  +  +M     V + +
Sbjct: 166 DGNNLKLVEIAHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEK 225

Query: 385 NCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGM 444
                ++ Y++  D   A++  + M+E  CS  + + N++V G C    + +A+ + + M
Sbjct: 226 TFTTIMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEM 285

Query: 445 AEK 447
           + +
Sbjct: 286 SNQ 288


>gi|302806475|ref|XP_002984987.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
 gi|300147197|gb|EFJ13862.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
          Length = 471

 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 95/365 (26%), Positives = 162/365 (44%), Gaps = 12/365 (3%)

Query: 117 FDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSL 176
            D   D ++SM  +   ++ T+ ++ +++  A ++++A+   + M + GC  ++   N L
Sbjct: 41  LDGAMDHLRSMGCDP--NVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVL 98

Query: 177 LSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVG 235
           + A+C+      A   ++ +++G   P+  T+  L++G+ K  +V +A+K  G MV + G
Sbjct: 99  VDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAK-G 157

Query: 236 WDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRG 295
             P NV  Y + +  L K      E    L+ M   G  P    +            +  
Sbjct: 158 MRP-NVVTYSALIDGLCKS-QKFLEAKEVLEEMKASGVTPDAFTYSALIHGLCKADKIEE 215

Query: 296 AEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILF 355
           AE +   M G  G  PD  +Y+ +I  +C S +   A K L EM      PD+ TYN + 
Sbjct: 216 AEQMLRRMAGS-GCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVI 274

Query: 356 EFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYV-AIKFWKYMIENHC 414
           + L K  K+ EA  + ++M ++ +VL      + V   +   D  V A K    M +  C
Sbjct: 275 DGLCKLGKIAEAQVILDQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGC 334

Query: 415 SDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARK----EA 470
           +    T   ++ GLC    L EA    +GM   G        + L   L KARK    E 
Sbjct: 335 NPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAER 394

Query: 471 VYEEL 475
           V EE+
Sbjct: 395 VMEEM 399



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/273 (26%), Positives = 126/273 (46%), Gaps = 5/273 (1%)

Query: 104 WNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLA-TFASVFSSYVVADRVKDAITTFDVME 162
           ++ ++D L K+  F    + ++ MK   V   A T++++      AD++++A      M 
Sbjct: 165 YSALIDGLCKSQKFLEAKEVLEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMA 224

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYAILLEGWEKERDVA 221
             GC  DV   +S++ A C+ GK ++A + L+ +   R  PD  TY  +++G  K   +A
Sbjct: 225 GSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIA 284

Query: 222 NAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFK 281
            A+    +M       PD V  Y + +  L K  D + E    L RM + GCNP +  + 
Sbjct: 285 EAQVILDQMQESGDVLPD-VVTYSTVINGLCKS-DMLVEAQKLLDRMCKAGCNPDVVTYT 342

Query: 282 LAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVY 341
              +       L  AE++   M  R G  P+   Y  +IS  C + +   A ++++EM  
Sbjct: 343 TIIDGLCKCGRLEEAEYLLQGM-KRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRN 401

Query: 342 NGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
            G  P++ TYN +   L    ++ EA  L   M
Sbjct: 402 AGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRM 434



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 72/157 (45%), Gaps = 5/157 (3%)

Query: 220 VANAKKTFGEM--VIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGM 277
           +ANA    G M  +  +G DP NV  Y + LI        + E +  L+ M ERGC P +
Sbjct: 35  MANAGDLDGAMDHLRSMGCDP-NVVTY-TALIAAFARAKKLEEAMKLLEEMRERGCPPNL 92

Query: 278 TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLD 337
             + +  +       +  A+ +   M+   GF P+   +N ++  +C       A KLL 
Sbjct: 93  VTYNVLVDALCKLSMVGAAQDVVKKMI-EGGFAPNVMTFNSLVDGFCKRGNVDDARKLLG 151

Query: 338 EMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
            MV  G  P++ TY+ L + L K +K  EA  +  EM
Sbjct: 152 IMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEM 188



 Score = 44.7 bits (104), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 74/182 (40%), Gaps = 19/182 (10%)

Query: 308 GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEA 367
           GF PD   +  +I+    + +   AM  L  M   G  P++ TY  L     + +KL EA
Sbjct: 20  GFAPDAFTHTPIITAMANAGDLDGAMDHLRSM---GCDPNVVTYTALIAAFARAKKLEEA 76

Query: 368 SGLFNEMVKNE--------NVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSE 419
             L  EM +          NVL    C+ ++           A    K MIE   +    
Sbjct: 77  MKLLEEMRERGCPPNLVTYNVLVDALCKLSM--------VGAAQDVVKKMIEGGFAPNVM 128

Query: 420 TGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKC 479
           T N LV G C    + +A K    M  KG++      S L   L K++K    +E+L++ 
Sbjct: 129 TFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEM 188

Query: 480 KA 481
           KA
Sbjct: 189 KA 190



 Score = 40.8 bits (94), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 53/125 (42%), Gaps = 3/125 (2%)

Query: 324 CYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNH 383
           C + +  AA++LL+EM   G  PD  T+  +   +     L  A      M  + NV+ +
Sbjct: 1   CNAGDLHAALELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGAMDHLRSMGCDPNVVTY 60

Query: 384 ENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKG 443
               A +  +  +     A+K  + M E  C     T N+LV  LC + M+  A    K 
Sbjct: 61  ---TALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKK 117

Query: 444 MAEKG 448
           M E G
Sbjct: 118 MIEGG 122


>gi|302806555|ref|XP_002985027.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
 gi|300147237|gb|EFJ13902.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
          Length = 443

 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 95/372 (25%), Positives = 159/372 (42%), Gaps = 21/372 (5%)

Query: 106 LVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYG 165
           L+  L+    L  A   A ++      + + T+ ++        ++++A+   + +   G
Sbjct: 5   LINGLVKAGMLIQAHSLAQETTTNGCTIDIHTYTTIVDWLAKNKKIQEAVALMEKITANG 64

Query: 166 CKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYAILLEGWEKERDVANAK 224
           C   +   N+LL+ +C+ G+  +A   LR +VD    PD  TY  L++G  K++    A 
Sbjct: 65  CTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKKKRSFEAY 124

Query: 225 KTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAF 284
           K F EM    G   D V  Y + +  LL+    I +  +  K M  +GC P +       
Sbjct: 125 KLFKEMASR-GLALDTV-CYTALIRGLLQA-GKIPQASSVYKTMTSQGCVPDVVTLSTMI 181

Query: 285 EECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGA 344
           +       +  A  I+ +M  R G  P+  +Y+ +I   C + +   A+++L +M     
Sbjct: 182 DGLCKAGRIGAAVRIFKSMEAR-GLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFC 240

Query: 345 FPDIQTYNILFEFLVKGRKLWEASGLFNEM--------VKNENVLNHENCRAAVRVYMDS 396
            PD  TYNIL + L K   +  A   F+EM        V   N+L    C+A      ++
Sbjct: 241 TPDTITYNILIDGLCKSGDVAAARAFFDEMLEAGCKPDVYTYNILISGFCKAG-----NT 295

Query: 397 DDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFAL 456
           D    A   +  M  + CS    T   L++GLC    L +A  Y + M E+G     F  
Sbjct: 296 D---AACGVFDDMSSSRCSPNVVTYGTLISGLCKRRQLTKASLYYQHMKERGCPPDSFVY 352

Query: 457 SKLKQILIKARK 468
           S L   L K+ K
Sbjct: 353 SSLVDGLCKSGK 364



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 75/173 (43%)

Query: 308 GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEA 367
           G  P    YN +++  C       A+ LL ++V NG  PD+ TY  L + L K ++ +EA
Sbjct: 64  GCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKKKRSFEA 123

Query: 368 SGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAG 427
             LF EM      L+     A +R  + +     A   +K M    C     T + ++ G
Sbjct: 124 YKLFKEMASRGLALDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDG 183

Query: 428 LCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKCK 480
           LC    +  AV+  K M  +G+       S L   L KARK     E+L + K
Sbjct: 184 LCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMK 236



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 65/290 (22%), Positives = 113/290 (38%), Gaps = 49/290 (16%)

Query: 125 KSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRD 183
           K+M  +  +  + T +++      A R+  A+  F  ME  G   +    ++L+  +C+ 
Sbjct: 163 KTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKA 222

Query: 184 GKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVP 242
            K   A + L ++      PD  TY IL++G  K  DVA A+  F EM +E G  PD V 
Sbjct: 223 RKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVAAARAFFDEM-LEAGCKPD-VY 280

Query: 243 AYDSYLITLLKGCD-----GIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAE 297
            Y+  +    K  +     G+++ ++S +      C+P +  +          + L  A 
Sbjct: 281 TYNILISGFCKAGNTDAACGVFDDMSSSR------CSPNVVTYGTLISGLCKRRQLTKAS 334

Query: 298 FIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNG-------------- 343
             +  M  R G  PD+ +Y+ ++   C S +      L DEM  +G              
Sbjct: 335 LYYQHMKER-GCPPDSFVYSSLVDGLCKSGKLEGGCMLFDEMERSGVANSQTRTRLIFHL 393

Query: 344 -------------------AFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
                                P    YN +   L+K  K+ E   ++ EM
Sbjct: 394 CKANRVDEAVSLFNAIRKEGMPHPYAYNSIISALIKSGKVNEGQAVYQEM 443


>gi|147742764|gb|ABQ50546.1| hypothetical protein [Brassica rapa]
          Length = 650

 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 89/334 (26%), Positives = 149/334 (44%), Gaps = 9/334 (2%)

Query: 110 LLGKNCLFDAMWDAIKSMK----KENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYG 165
           LL   CL   +++A++ +      ++V  L T  ++ +   + DRV +A+     M   G
Sbjct: 166 LLNGLCLEGRVFEAVELVDCMVLSQHVPDLITLNTIVNGLCLKDRVSEAVDLIARMMANG 225

Query: 166 CKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVANAK 224
           C+ + F    +L+ +C+ G T  A   LR ++ R IKP   TY I+++   K+  + +A 
Sbjct: 226 CQPNQFTYGPILNRMCKSGNTASALDLLRKMEHRKIKPHVVTYTIIIDNLCKDGRLDDAL 285

Query: 225 KTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAF 284
             F EM  E      NV  Y+S LI          +    L+ M+ R   P +  F    
Sbjct: 286 SFFSEM--ETKGIKANVFTYNS-LIGSFCSFGRWDDGAQLLRDMITRKITPNVVTFSALI 342

Query: 285 EECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGA 344
           +  +    L  A+ ++  M+ R G  P+T  YN +I   C       A +++D MV  G 
Sbjct: 343 DSLVKEGKLTEAKDLYNEMITR-GIEPNTITYNSLIYGLCNDKRLDEANQMMDLMVSKGC 401

Query: 345 FPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIK 404
            PDI TYNIL     K +++ +   LF +M     + +       ++ +  S    VA K
Sbjct: 402 DPDIWTYNILINGFCKAKQVDDGMRLFRKMSLRGMIADTVTYSTLIQGFCQSRKLIVAKK 461

Query: 405 FWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAV 438
            ++ M+         T  +L+ GLCD   L EA+
Sbjct: 462 VFQEMVSQGVHPGIMTYAILLDGLCDNGELEEAL 495



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 87/326 (26%), Positives = 150/326 (46%), Gaps = 23/326 (7%)

Query: 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR 194
           + T+  +  +     R+ DA++ F  ME  G K +VF  NSL+ + C  G+  D  Q LR
Sbjct: 265 VVTYTIIIDNLCKDGRLDDALSFFSEMETKGIKANVFTYNSLIGSFCSFGRWDDGAQLLR 324

Query: 195 -VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLK 253
            ++  +I P+  T++ L++   KE  +  AK  + EM+   G +P+ +  Y+S +  L  
Sbjct: 325 DMITRKITPNVVTFSALIDSLVKEGKLTEAKDLYNEMITR-GIEPNTI-TYNSLIYGLCN 382

Query: 254 GCDGIYETVNSLKRMM-ERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD 312
             D   +  N +  +M  +GC+P +  + +        + +     ++  M  R G   D
Sbjct: 383 --DKRLDEANQMMDLMVSKGCDPDIWTYNILINGFCKAKQVDDGMRLFRKMSLR-GMIAD 439

Query: 313 THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFN 372
           T  Y+ +I  +C S +   A K+  EMV  G  P I TY IL + L    +L EA G+ +
Sbjct: 440 TVTYSTLIQGFCQSRKLIVAKKVFQEMVSQGVHPGIMTYAILLDGLCDNGELEEALGILD 499

Query: 373 EMVKNE--------NVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLL 424
           +M K +        N++ H  C A        DD +    F     +    D+ ++ N++
Sbjct: 500 QMHKCKMELDIGIYNIIIHGMCNAN-----KVDDAWSL--FCSLPSKGVKRDI-QSYNIM 551

Query: 425 VAGLCDMHMLPEAVKYAKGMAEKGIQ 450
           ++GLC    L EA    + M E G +
Sbjct: 552 LSGLCKRSSLSEADALFRKMKEDGYE 577



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 81/365 (22%), Positives = 152/365 (41%), Gaps = 58/365 (15%)

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERD 219
           ME  G  +D++ LN +++  CR  K   A+  + ++     +P+  T+  LL G   E  
Sbjct: 116 MELKGIAYDLYTLNIMINCFCRRRKLGFAFSAMGKIFKLGYEPNTVTFNTLLNGLCLEGR 175

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC---DGIYETVNSLKRMMERGCNPG 276
           V  A +    MV+       +VP   + L T++ G    D + E V+ + RMM  GC P 
Sbjct: 176 VFEAVELVDCMVLS-----QHVPDLIT-LNTIVNGLCLKDRVSEAVDLIARMMANGCQPN 229

Query: 277 -MTFFKLAFEECLTGQNLRGAEFI--------------WGAMV------GRI-------- 307
             T+  +    C +G      + +              +  ++      GR+        
Sbjct: 230 QFTYGPILNRMCKSGNTASALDLLRKMEHRKIKPHVVTYTIIIDNLCKDGRLDDALSFFS 289

Query: 308 -----GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGR 362
                G + +   YN +I  +C         +LL +M+     P++ T++ L + LVK  
Sbjct: 290 EMETKGIKANVFTYNSLIGSFCSFGRWDDGAQLLRDMITRKITPNVVTFSALIDSLVKEG 349

Query: 363 KLWEASGLFNEMVKN---ENVLNHENCRAAVRVYMDSDDPYV--AIKFWKYMIENHCSDL 417
           KL EA  L+NEM+      N + + +      +Y   +D  +  A +    M+   C   
Sbjct: 350 KLTEAKDLYNEMITRGIEPNTITYNSL-----IYGLCNDKRLDEANQMMDLMVSKGCDPD 404

Query: 418 SETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARK----EAVYE 473
             T N+L+ G C    + + ++  + M+ +G+       S L Q   ++RK    + V++
Sbjct: 405 IWTYNILINGFCKAKQVDDGMRLFRKMSLRGMIADTVTYSTLIQGFCQSRKLIVAKKVFQ 464

Query: 474 ELLKK 478
           E++ +
Sbjct: 465 EMVSQ 469



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 59/241 (24%), Positives = 104/241 (43%), Gaps = 9/241 (3%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           T+ S+        R+ +A    D+M   GC  D++  N L++  C+  +  D  +  R +
Sbjct: 372 TYNSLIYGLCNDKRLDEANQMMDLMVSKGCDPDIWTYNILINGFCKAKQVDDGMRLFRKM 431

Query: 197 DGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
             R +  D  TY+ L++G+ + R +  AKK F EMV +        P   +Y I L   C
Sbjct: 432 SLRGMIADTVTYSTLIQGFCQSRKLIVAKKVFQEMVSQGVH-----PGIMTYAILLDGLC 486

Query: 256 DG--IYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDT 313
           D   + E +  L +M +      +  + +          +  A  ++ ++  + G + D 
Sbjct: 487 DNGELEEALGILDQMHKCKMELDIGIYNIIIHGMCNANKVDDAWSLFCSLPSK-GVKRDI 545

Query: 314 HMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNE 373
             YN+M+S  C  +    A  L  +M  +G  PD  TYN L    ++G  +  +  L  E
Sbjct: 546 QSYNIMLSGLCKRSSLSEADALFRKMKEDGYEPDGCTYNTLIRAHLRGNDITTSVQLIEE 605

Query: 374 M 374
           M
Sbjct: 606 M 606


>gi|15231863|ref|NP_190938.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174107|sp|Q9LFF1.1|PP281_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g53700, chloroplastic; AltName: Full=Protein MATERNAL
           EFFECT EMBRYO ARREST 40; Flags: Precursor
 gi|6729521|emb|CAB67677.1| putative protein [Arabidopsis thaliana]
 gi|15982931|gb|AAL09812.1| AT3g53700/F4P12_400 [Arabidopsis thaliana]
 gi|332645608|gb|AEE79129.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 754

 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 93/350 (26%), Positives = 158/350 (45%), Gaps = 9/350 (2%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RV 195
           TF ++ +    A  VK AI   DVM Q G   DV+  NS++S +C+ G+  +A + L ++
Sbjct: 297 TFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQM 356

Query: 196 VDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
           +     P+  TY  L+    KE  V  A +    ++   G  PD V  ++S LI  L   
Sbjct: 357 ITRDCSPNTVTYNTLISTLCKENQVEEATE-LARVLTSKGILPD-VCTFNS-LIQGLCLT 413

Query: 256 DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHM 315
                 +   + M  +GC P    + +  +   +   L  A  +   M    G       
Sbjct: 414 RNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQM-ELSGCARSVIT 472

Query: 316 YNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
           YN +I  +C +N+T  A ++ DEM  +G   +  TYN L + L K R++ +A+ L ++M+
Sbjct: 473 YNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMI 532

Query: 376 KNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLP 435
                 +     + +  +    D   A    + M  N C     T   L++GLC    + 
Sbjct: 533 MEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVE 592

Query: 436 EAVKYAKGMAEKGIQVTPFALSKLKQILIKARK--EAV--YEELLKKCKA 481
            A K  + +  KGI +TP A + + Q L + RK  EA+  + E+L++ +A
Sbjct: 593 VASKLLRSIQMKGINLTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEA 642



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 101/441 (22%), Positives = 180/441 (40%), Gaps = 49/441 (11%)

Query: 84  AVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASVF 142
           A++ F  ++ + N    P  +  ++  LG++  FD M   ++ MK     +  +TF  + 
Sbjct: 66  ALRLFNLASKKPNFSPEPALYEEILLRLGRSGSFDDMKKILEDMKSSRCEMGTSTFLILI 125

Query: 143 SSYVVADRVKDAITTFD------------------------------------VMEQYGC 166
            SY   +   + ++  D                                     M  +G 
Sbjct: 126 ESYAQFELQDEILSVVDWMIDEFGLKPDTHFYNRMLNLLVDGNSLKLVEISHAKMSVWGI 185

Query: 167 KHDVFALNSLLSAICRDGKTIDAWQFLRVVDG-RIKPDNDTYAILLEGWEKERDVANAKK 225
           K DV   N L+ A+CR  +   A   L  +    + PD  T+  +++G+ +E D+  A +
Sbjct: 186 KPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALR 245

Query: 226 TFGEMVIEVGWDPDNVPAYDSYLITLLKGC-DG-IYETVNSLKRMMER-GCNPGM-TFFK 281
              +MV E G    NV    S  + +   C +G + + +N ++ M  + G  P   TF  
Sbjct: 246 IREQMV-EFGCSWSNV----SVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNT 300

Query: 282 LAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVY 341
           L    C  G +++ A  I   M+   G+ PD + YN +IS  C   E   A+++LD+M+ 
Sbjct: 301 LVNGLCKAG-HVKHAIEIMDVMLQE-GYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMIT 358

Query: 342 NGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYV 401
               P+  TYN L   L K  ++ EA+ L   +     + +     + ++    + +  V
Sbjct: 359 RDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRV 418

Query: 402 AIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQ 461
           A++ ++ M    C     T N+L+  LC    L EA+   K M   G   +    + L  
Sbjct: 419 AMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLID 478

Query: 462 ILIKARKEAVYEELLKKCKAH 482
              KA K    EE+  + + H
Sbjct: 479 GFCKANKTREAEEIFDEMEVH 499



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 87/350 (24%), Positives = 143/350 (40%), Gaps = 42/350 (12%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           T+ SV S       VK+A+   D M    C  +    N+L+S +C++ +  +A +  RV+
Sbjct: 332 TYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVL 391

Query: 197 DGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
             + I PD  T+  L++G    R+   A + F EM  + G +PD    Y+  LI  L   
Sbjct: 392 TSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSK-GCEPDEF-TYN-MLIDSLCSK 448

Query: 256 DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAM----VGR----- 306
             + E +N LK+M   GC   +  +    +        R AE I+  M    V R     
Sbjct: 449 GKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTY 508

Query: 307 -------------------------IGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVY 341
                                     G +PD + YN +++ +C   +   A  ++  M  
Sbjct: 509 NTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTS 568

Query: 342 NGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM-VKNENVLNHENCRAAVRVYMDSDDPY 400
           NG  PDI TY  L   L K  ++  AS L   + +K  N+  H      ++         
Sbjct: 569 NGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPHAY-NPVIQGLFRKRKTT 627

Query: 401 VAIKFWKYMIE-NHCSDLSETGNLLVAGLCDMHM-LPEAVKYAKGMAEKG 448
            AI  ++ M+E N     + +  ++  GLC+    + EAV +   + EKG
Sbjct: 628 EAINLFREMLEQNEAPPDAVSYRIVFRGLCNGGGPIREAVDFLVELLEKG 677



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 82/350 (23%), Positives = 141/350 (40%), Gaps = 8/350 (2%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVM 161
            +N ++  L K    +   +  + +  + +L  + TF S+     +    + A+  F+ M
Sbjct: 367 TYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEM 426

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVD-GRIKPDNDTYAILLEGWEKERDV 220
              GC+ D F  N L+ ++C  GK  +A   L+ ++         TY  L++G+ K    
Sbjct: 427 RSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKT 486

Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFF 280
             A++ F EM  EV     N   Y++ +  L K    + +    + +M+  G  P    +
Sbjct: 487 REAEEIFDEM--EVHGVSRNSVTYNTLIDGLCKS-RRVEDAAQLMDQMIMEGQKPDKYTY 543

Query: 281 KLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMV 340
                    G +++ A  I  AM    G  PD   Y  +IS  C +     A KLL  + 
Sbjct: 544 NSLLTHFCRGGDIKKAADIVQAMTSN-GCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQ 602

Query: 341 YNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV-KNENVLNHENCRAAVRVYMDSDDP 399
             G       YN + + L + RK  EA  LF EM+ +NE   +  + R   R   +   P
Sbjct: 603 MKGINLTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAPPDAVSYRIVFRGLCNGGGP 662

Query: 400 YV-AIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448
              A+ F   ++E        +  +L  GL  + M    VK    + +K 
Sbjct: 663 IREAVDFLVELLEKGFVPEFSSLYMLAEGLLTLSMEETLVKLVNMVMQKA 712



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 57/244 (23%), Positives = 112/244 (45%), Gaps = 14/244 (5%)

Query: 210 LLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPA-YDSYLITLLKGCDGIYETVNS-LKR 267
           LL+    + D + A + F     +  + P+  PA Y+  L+ L  G  G ++ +   L+ 
Sbjct: 53  LLDSLRSQPDDSAALRLFNLASKKPNFSPE--PALYEEILLRL--GRSGSFDDMKKILED 108

Query: 268 MMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSN 327
           M    C  G + F +  E     +       +   M+   G +PDTH YN M++L     
Sbjct: 109 MKSSRCEMGTSTFLILIESYAQFELQDEILSVVDWMIDEFGLKPDTHFYNRMLNLLV--- 165

Query: 328 ETGAAMKLLD----EMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNH 383
             G ++KL++    +M   G  PD+ T+N+L + L +  +L  A  +  +M     V + 
Sbjct: 166 -DGNSLKLVEISHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDE 224

Query: 384 ENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKG 443
           +     ++ Y++  D   A++  + M+E  CS  + + N++V G C    + +A+ + + 
Sbjct: 225 KTFTTVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQE 284

Query: 444 MAEK 447
           M+ +
Sbjct: 285 MSNQ 288


>gi|449451922|ref|XP_004143709.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g61360-like [Cucumis sativus]
 gi|449520004|ref|XP_004167024.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g61360-like [Cucumis sativus]
          Length = 504

 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 95/412 (23%), Positives = 180/412 (43%), Gaps = 25/412 (6%)

Query: 77  SYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKEN--VLS 134
           ++S+   A++FF++  +      +  A+   + +L +   FD  W+ ++ +++ +  +L+
Sbjct: 86  AHSNGLKALEFFKFCLHHSQAPPTSDAFEKTLHILSRMRYFDQSWELMREIRQTHPFLLT 145

Query: 135 LATFASVFSSYVVADRVKDAITTFDVMEQ---YGCKHDVFALNSLLSAICRDGKTIDAWQ 191
           L + + + S        ++ I  F  ME     G K      N LL A C   +  +A  
Sbjct: 146 LKSMSILLSRIAKFLSFEETIEAFQRMENEVFVGRKFGTEEFNVLLRAFCTQRQMKEARS 205

Query: 192 FLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVP---AYDSYL 248
               +  R  P+  T  +LL G+++  D+ + +  + EM I+ G+ P+ V      D+Y 
Sbjct: 206 VFHKMYSRFPPNIKTINLLLLGFKESSDITSVELFYHEM-IKRGFKPNAVTYSIRIDAYC 264

Query: 249 ITLLKGC--DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGR 306
               KGC  DG+       K M    C P +          + G  +   +     +   
Sbjct: 265 K---KGCFVDGL----RVFKEMERAKCEPTLE----TITTLIHGAGIVKDKTKARQLFDE 313

Query: 307 IGFR---PDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRK 363
           I  R   PD   YN +IS    S +  +A  ++++M       D  TY+++F  L++   
Sbjct: 314 IPLRNLCPDIGAYNALISSLIRSGDVKSAASVMEDMEAKHIEHDSVTYHMMFSGLIRLED 373

Query: 364 LWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNL 423
           +     L+ +MV    V         ++ + ++    + + FW Y++E      S   +L
Sbjct: 374 VGGFYELYIKMVGRNFVPKTRTAVMIMKFFCENRRVDLGLGFWAYLVEKGYCPHSHVLDL 433

Query: 424 LVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEEL 475
           LV GLC   M+ +A + +K M E+G Q++  A   +++ L+KA     YEEL
Sbjct: 434 LVTGLCARGMVLQAFECSKQMLERGRQMSEAAFLIMERCLLKAHATDKYEEL 485


>gi|357494043|ref|XP_003617310.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355518645|gb|AET00269.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 716

 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 100/402 (24%), Positives = 174/402 (43%), Gaps = 45/402 (11%)

Query: 92  AYQLNDKH----SPYAWNLVVDLLGKNCLFDAMWDAIKS-MKKENVLSLATFASVFSSYV 146
           A+QL  K     S  A N ++  + K    D  W   +  +K  N++++ T   + ++  
Sbjct: 176 AFQLLRKRGFCVSINACNALLGAIVKVGWVDLAWKVYEDFVKSGNIVNVYTLNIMVNALC 235

Query: 147 VADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDND 205
              ++ +       ME+ G   D+   N+L++A CR G   +A+  +  + G+ +KP   
Sbjct: 236 KDGKLDNVGVYLSEMEEKGVYADLVTYNTLVNAYCRRGLVSEAFGLVDCMAGKGLKPGLF 295

Query: 206 TYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSL 265
           TY  L+ G  KE     AK+   EM + VG  P N   ++  L+   +  D ++E     
Sbjct: 296 TYNALINGLCKEGSYERAKRVLDEM-LGVGLCP-NAATFNPMLVESCRKED-VWEAERVF 352

Query: 266 KRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCY 325
             M++RG  P +  F  +     +     G    +   +  +G  PDT +Y ++I+ YC 
Sbjct: 353 NEMLQRGVVPDLISFS-SIVGVFSRNGELGRALAYFEKMKGVGLVPDTVIYTILINGYCR 411

Query: 326 SNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNE------- 378
           +++   A+K+ +EMV  G   D+ TYN L   L +G+ L +A  LF EMV+         
Sbjct: 412 NDDVSGALKMRNEMVERGCVMDVVTYNTLLNGLCRGKMLDDADELFKEMVERGVFPDFYT 471

Query: 379 -NVLNHENCR-----AAVRVY----MDSDDPYV------------------AIKFWKYMI 410
              L H  C+      A+ ++    + S  P V                  A + W  MI
Sbjct: 472 LTTLIHGYCKDGNMTKALSLFETMTLRSLKPDVVTYNTLMDGFCKVGEMEKAKELWYDMI 531

Query: 411 ENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVT 452
                    + ++L+ G C + ++ EA +    M EKGI+ T
Sbjct: 532 SREIFPSYISFSILINGFCSLGLVSEAFRLWDEMKEKGIKPT 573



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 89/384 (23%), Positives = 160/384 (41%), Gaps = 39/384 (10%)

Query: 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLS-LATFASVFSSYVVADRVKDAITTFDV 160
           Y  N++V+ L K+   D +   +  M+++ V + L T+ ++ ++Y     V +A    D 
Sbjct: 225 YTLNIMVNALCKDGKLDNVGVYLSEMEEKGVYADLVTYNTLVNAYCRRGLVSEAFGLVDC 284

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDG-RIKPDNDTY-AILLEGWEKER 218
           M   G K  +F  N+L++ +C++G    A + L  + G  + P+  T+  +L+E   KE 
Sbjct: 285 MAGKGLKPGLFTYNALINGLCKEGSYERAKRVLDEMLGVGLCPNAATFNPMLVESCRKE- 343

Query: 219 DVANAKKTFGEMVIEVGWDPDNVP------------------AY-----------DSYLI 249
           DV  A++ F EM ++ G  PD +                   AY           D+ + 
Sbjct: 344 DVWEAERVFNEM-LQRGVVPDLISFSSIVGVFSRNGELGRALAYFEKMKGVGLVPDTVIY 402

Query: 250 TLLKG--C--DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVG 305
           T+L    C  D +   +     M+ERGC   +  +         G+ L  A+ ++  MV 
Sbjct: 403 TILINGYCRNDDVSGALKMRNEMVERGCVMDVVTYNTLLNGLCRGKMLDDADELFKEMVE 462

Query: 306 RIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLW 365
           R G  PD +    +I  YC       A+ L + M      PD+ TYN L +   K  ++ 
Sbjct: 463 R-GVFPDFYTLTTLIHGYCKDGNMTKALSLFETMTLRSLKPDVVTYNTLMDGFCKVGEME 521

Query: 366 EASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLV 425
           +A  L+ +M+  E   ++ +    +  +        A + W  M E        T N ++
Sbjct: 522 KAKELWYDMISREIFPSYISFSILINGFCSLGLVSEAFRLWDEMKEKGIKPTLVTCNTII 581

Query: 426 AGLCDMHMLPEAVKYAKGMAEKGI 449
            G      L +A  +   M  +G+
Sbjct: 582 KGYLRAGNLSKANDFLNTMISEGV 605



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 75/346 (21%), Positives = 137/346 (39%), Gaps = 45/346 (13%)

Query: 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR 194
           +  F  +  +YV A ++++    F ++ + G    + A N+LL AI + G    AW+   
Sbjct: 154 VVVFDLLIRTYVQARKLREGSEAFQLLRKRGFCVSINACNALLGAIVKVGWVDLAWK--- 210

Query: 195 VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDP--DNVPAYDSYLITLL 252
                          + E + K  ++ N   T   MV  +  D   DNV  Y S +    
Sbjct: 211 ---------------VYEDFVKSGNIVNVY-TLNIMVNALCKDGKLDNVGVYLSEMEE-- 252

Query: 253 KGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGR------ 306
               G+Y  + +   ++   C  G+        +C+ G+ L+   F + A++        
Sbjct: 253 ---KGVYADLVTYNTLVNAYCRRGLVSEAFGLVDCMAGKGLKPGLFTYNALINGLCKEGS 309

Query: 307 -------------IGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNI 353
                        +G  P+   +N M+   C   +   A ++ +EM+  G  PD+ +++ 
Sbjct: 310 YERAKRVLDEMLGVGLCPNAATFNPMLVESCRKEDVWEAERVFNEMLQRGVVPDLISFSS 369

Query: 354 LFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENH 413
           +     +  +L  A   F +M     V +       +  Y  +DD   A+K    M+E  
Sbjct: 370 IVGVFSRNGELGRALAYFEKMKGVGLVPDTVIYTILINGYCRNDDVSGALKMRNEMVERG 429

Query: 414 CSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKL 459
           C     T N L+ GLC   ML +A +  K M E+G+    + L+ L
Sbjct: 430 CVMDVVTYNTLLNGLCRGKMLDDADELFKEMVERGVFPDFYTLTTL 475



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 58/247 (23%), Positives = 105/247 (42%), Gaps = 9/247 (3%)

Query: 132 VLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ 191
           V+ + T+ ++ +       + DA   F  M + G   D + L +L+   C+DG    A  
Sbjct: 431 VMDVVTYNTLLNGLCRGKMLDDADELFKEMVERGVFPDFYTLTTLIHGYCKDGNMTKALS 490

Query: 192 FLRVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLIT 250
               +  R +KPD  TY  L++G+ K  ++  AK+ + +M+       +  P+Y S+ I 
Sbjct: 491 LFETMTLRSLKPDVVTYNTLMDGFCKVGEMEKAKELWYDMI-----SREIFPSYISFSIL 545

Query: 251 LLKGCDG--IYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIG 308
           +   C    + E       M E+G  P +       +  L   NL  A      M+   G
Sbjct: 546 INGFCSLGLVSEAFRLWDEMKEKGIKPTLVTCNTIIKGYLRAGNLSKANDFLNTMISE-G 604

Query: 309 FRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEAS 368
             PD   YN +I+ +        A  L++ M   G  P++ TYN +     +  ++ EA 
Sbjct: 605 VPPDCITYNTLINSFVKEENFDRAFFLINNMEERGLLPNLVTYNAILGGFSRHGRMQEAE 664

Query: 369 GLFNEMV 375
            + ++M+
Sbjct: 665 MVLHKMI 671



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 56/279 (20%), Positives = 107/279 (38%), Gaps = 35/279 (12%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVM 161
            +N +++ L +  + D   +  K M +  V     T  ++   Y     +  A++ F+ M
Sbjct: 436 TYNTLLNGLCRGKMLDDADELFKEMVERGVFPDFYTLTTLIHGYCKDGNMTKALSLFETM 495

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQF-LRVVDGRIKPDNDTYAILLEGWEKERDV 220
                K DV   N+L+   C+ G+   A +    ++   I P   +++IL+ G+     V
Sbjct: 496 TLRSLKPDVVTYNTLMDGFCKVGEMEKAKELWYDMISREIFPSYISFSILINGFCSLGLV 555

Query: 221 ANAKKTFGEM--------------VIEVGWDPDNVPAYDSYLITLLK-----GCDGIYET 261
           + A + + EM              +I+      N+   + +L T++       C      
Sbjct: 556 SEAFRLWDEMKEKGIKPTLVTCNTIIKGYLRAGNLSKANDFLNTMISEGVPPDCITYNTL 615

Query: 262 VNS-------------LKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIG 308
           +NS             +  M ERG  P +  +            ++ AE +   M+ + G
Sbjct: 616 INSFVKEENFDRAFFLINNMEERGLLPNLVTYNAILGGFSRHGRMQEAEMVLHKMIDK-G 674

Query: 309 FRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPD 347
             PD   Y  +I+ Y   +    A ++ DEM+  G  PD
Sbjct: 675 INPDKSTYTSLINGYVSKDNMKEAFRVHDEMLQRGFVPD 713


>gi|147793827|emb|CAN62355.1| hypothetical protein VITISV_022418 [Vitis vinifera]
          Length = 546

 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 100/420 (23%), Positives = 175/420 (41%), Gaps = 13/420 (3%)

Query: 39  IKTLCEIIANTPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAY-QLND 97
           ++ L +   ++    +E  L +  + ++ + V  VLK   S   PA  FF W++      
Sbjct: 90  VQNLLKTYRDSSVSEIEGALHQCRLSLTDDLVLDVLKRHRSDWRPAYVFFNWASRCGXES 149

Query: 98  KHSPY--AWNLVVDLLGKNCLFDAMWDAIKSM-KKENVLSLATFASVFSSYVVADRVKDA 154
            +SP     N ++D+LG+   F  M      M K++ + +  TF  + + Y  A + ++A
Sbjct: 150 GYSPGCGVHNEILDILGRMRRFHEMTQLFDEMSKRKGLXNERTFGVLLNRYAAAHKTEEA 209

Query: 155 ITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEG 213
           +  F   +  G + D+ A  +LL ++CR  K ++  +FL         PD  +  ++L G
Sbjct: 210 VKIFYKRKGLGFELDLIAFQTLLMSLCR-YKHVEMAEFLFHSKKNEFPPDIKSMNVILNG 268

Query: 214 WEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGC 273
           W     +  AK+ F   +I     PD    Y  ++ +L K    +   V   + M E+GC
Sbjct: 269 WCVLGSLREAKR-FWNDIITSKCKPDKF-TYGIFINSLTKA-GKLSTAVKLFQAMWEKGC 325

Query: 274 NPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAM 333
           NP +       +     + +  A  +   M  R   +PD   YN +I   C         
Sbjct: 326 NPDVAICNCIIDALCFKKRIPEALEVLREMNER-DCQPDVATYNSLIKHLCKIQRFEKVY 384

Query: 334 KLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVY 393
           +LLD+M   G  P+ +TY  L   L   +K  E  G+   M +N   +N +     +++Y
Sbjct: 385 ELLDDMEQKGCLPNARTYGYL---LKSTKKPEEVPGILERMERNGCRMNSDCYNLILKLY 441

Query: 394 MDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTP 453
           MD             M  N       T  +++ GL D   + +A+ Y K M   G+   P
Sbjct: 442 MDWGYELKLRSTLDEMERNGMGPDQRTYTIMIHGLYDKGRMDDALSYFKQMTLMGMVPEP 501


>gi|356573388|ref|XP_003554843.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g61360-like [Glycine max]
          Length = 491

 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 106/454 (23%), Positives = 196/454 (43%), Gaps = 26/454 (5%)

Query: 39  IKTLCEIIANTPSPTVEDVLDKTLIRV------SQETVEQVLK---FSYSHPGPAVKFFR 89
           + TL   I + P P     L  TL+ +      S   VE +L     S+S+   A++FF 
Sbjct: 19  VDTLTRTINDHPFPL--QPLQPTLLHLLPPSTFSTSLVENILGRLFASHSNGLKALEFFN 76

Query: 90  WSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKE--NVLSLATFASVFSSYVV 147
           +S    +   SP + N+ + +L +   FD  W  ++ + +   ++L+L + + V S    
Sbjct: 77  YSLVHSHFPLSPASLNMTLHILTRMRYFDKAWVLLRDIARTHPSLLTLKSMSIVLSKIAK 136

Query: 148 ADRVKDAITTFDVMEQ---YGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDN 204
               +D +  F  ME     G +      N LL A C   +  +A      +  R  P+ 
Sbjct: 137 FQSFEDTLDGFRRMEDEVFVGREFGTDEFNVLLKAFCTQRQMKEARSVFAKLVPRFSPNT 196

Query: 205 DTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVP---AYDSYLITLLKGCDGIYET 261
            +  ILL G+++  +V + +  + EMV   G+ PD V      D+Y     KGC G  + 
Sbjct: 197 KSMNILLLGFKESGNVTSVELFYHEMV-RRGFSPDGVTFNIRIDAYCK---KGCFG--DA 250

Query: 262 VNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMIS 321
           +  L+ M  R   P +             +N   A  ++  +  R     D   YN +I+
Sbjct: 251 LRLLEEMERRNVVPTIETITTLIHGAGLVRNKDKAWQLFKEIPSR-NMVADAGAYNALIT 309

Query: 322 LYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVL 381
               + +  +A  L+DEMV      D  TY+ +F   ++ R +   S L+ +M ++  V 
Sbjct: 310 ALVRTRDIESASSLMDEMVEKCIELDSVTYHTMFLGFMRSRGIEGVSKLYQKMTQSNFVP 369

Query: 382 NHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYA 441
                   ++ +  +    +++  WKY++E      +   +LLV GLC   ++ +A + +
Sbjct: 370 KTRTVVMLMKYFCQNYRLDLSVCLWKYLVEKGYCPHAHALDLLVTGLCARGLVHDAFECS 429

Query: 442 KGMAEKGIQVTPFALSKLKQILIKARKEAVYEEL 475
           K M E+G  ++  +   L++ L++A      +EL
Sbjct: 430 KQMLERGRHMSNASFLMLERFLLQASDMDKLKEL 463


>gi|242062936|ref|XP_002452757.1| hypothetical protein SORBIDRAFT_04g031880 [Sorghum bicolor]
 gi|241932588|gb|EES05733.1| hypothetical protein SORBIDRAFT_04g031880 [Sorghum bicolor]
          Length = 502

 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 104/442 (23%), Positives = 184/442 (41%), Gaps = 67/442 (15%)

Query: 33  PNLP-PTIKTLCEIIANTPSPTVEDVLDKTLIRVSQET------------VEQVLKFSYS 79
           PN P P+ + +  ++ N PS T+     ++L    Q T               V+K  + 
Sbjct: 20  PNKPIPSPRQIAALVLNHPSSTLTAASARSLSASLQATGPASALPIPAPVANAVIKLLWH 79

Query: 80  HPGPAVKFFRWSAYQLNDKH---SPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLA 136
           H   A+ FF  +  +L ++    SP   +L +DL  +      +  +I ++   + L+  
Sbjct: 80  HAPRALLFFH-ALLRLPERSRDLSPCTVDLALDLAARLRHPRQLTSSILALFPRHGLAFT 138

Query: 137 --TFASVFSSYVVADRVKDAITTF--DVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQF 192
             TF  +F  + V+ R  D    F   +   +G   D+   NSLL A+ +      A   
Sbjct: 139 PRTFPIMFERFAVSHRRPDHAVRFFLSLHRSHGVAQDLPLFNSLLDALVKSRHAGKAASL 198

Query: 193 LRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVP---------- 242
           +R ++ R  PD  TY  L +GW + +D + A     +MV E G  P              
Sbjct: 199 VRALERRFPPDAVTYNTLADGWCRVKDTSRALDILRQMV-ESGIAPTKTTYNIILKGFFR 257

Query: 243 ------AYDSYL-------------------ITLLKGCDGIYETVNSLKR----MMERGC 273
                 A+D +L                    T+L G  G+   ++  ++    M   GC
Sbjct: 258 SGQLQHAWDFFLQMKKRGSNDENCKPDVVSYTTVLHGL-GVAGQLDKARKVFDEMSREGC 316

Query: 274 NPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAM 333
            P +  +    +      N+  A  ++  M+ R G+ P+   Y ++I   C++ +   AM
Sbjct: 317 TPSIATYNALIQVTCKKGNVEDAVAVFDDMI-RKGYIPNVVTYTVLIRGLCHAGKIDRAM 375

Query: 334 KLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCR----AA 389
           KLLD+M   G  P++QTYN+L  +L +   + +A  LF  M K E  L +++      +A
Sbjct: 376 KLLDKMKREGCEPNVQTYNVLIGYLFEEGDIEKALHLFETMSKGEECLPNQDTYNIIISA 435

Query: 390 VRVYMDSDDPYVAIKFWKYMIE 411
           + V   ++D  VA +    M++
Sbjct: 436 MFVRKRAEDMAVAARMVVEMVD 457



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 61/147 (41%), Gaps = 9/147 (6%)

Query: 309 FRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEAS 368
           F PD   YN +   +C   +T  A+ +L +MV +G  P   TYNI+ +   +  +L  A 
Sbjct: 206 FPPDAVTYNTLADGWCRVKDTSRALDILRQMVESGIAPTKTTYNIILKGFFRSGQLQHAW 265

Query: 369 GLFNEMVKNENVLNHENCRAAVRVYMD-------SDDPYVAIKFWKYMIENHCSDLSETG 421
             F +M K  +  N ENC+  V  Y         +     A K +  M    C+    T 
Sbjct: 266 DFFLQMKKRGS--NDENCKPDVVSYTTVLHGLGVAGQLDKARKVFDEMSREGCTPSIATY 323

Query: 422 NLLVAGLCDMHMLPEAVKYAKGMAEKG 448
           N L+   C    + +AV     M  KG
Sbjct: 324 NALIQVTCKKGNVEDAVAVFDDMIRKG 350


>gi|255547888|ref|XP_002515001.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223546052|gb|EEF47555.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 466

 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 93/371 (25%), Positives = 155/371 (41%), Gaps = 47/371 (12%)

Query: 63  IRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWD 122
           I +S E V+++L         A+  FRW+  +   KHSP A++ +VD++GK    D M  
Sbjct: 47  IHLSHELVDKLLFRFKDDWKSALGVFRWAESRAGYKHSPEAYDTMVDIMGKMKQMDQMEF 106

Query: 123 AIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICR 182
            ++ M+K   ++L T       +  A + ++ +  FD +  +G + +  ++N LL  +C+
Sbjct: 107 LLEEMEKGQHVTLKTVGKAMRRFAGARQWENVLRVFDKLGTFGLEKNTESMNLLLDTLCK 166

Query: 183 DGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEM------------ 230
           + K   A +    +   I P+ +T+ I + GW K   V  A  T  EM            
Sbjct: 167 ERKVELAREIFLDLKSHISPNANTFNIFIHGWCKVNRVEEAYWTIQEMKGHGCTPCVISY 226

Query: 231 ---------------VIEV-------GWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRM 268
                          V E+       G  P NV  Y S +  L K  +   E +   +RM
Sbjct: 227 STIVQFYCHRSNFSKVYELLDEMEAQGLIP-NVVTYTSVMSALAKS-EEYEEALQIAQRM 284

Query: 269 MERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNE 328
              GC P   F+               A  ++   +   G  P+T  YN MI++ C+ ++
Sbjct: 285 KSVGCKPDTLFYNSLIHTLGKAGRPEEAIQVFEVEMPNTGVPPNTSTYNSMIAMLCHHSQ 344

Query: 329 TGAAMKLLDEMVYNGAF-PDIQTYNILFEFLVKGRKLWE-ASGLFNEMVKNEN------- 379
              A+ LL E+  +    PD+QTY  L +   K   +    S L ++MVK  +       
Sbjct: 345 ERKALNLLKEIEASIICKPDVQTYYPLLKSCFKAGSIDSLLSQLLDDMVKKHHLSLDFSA 404

Query: 380 --VLNHENCRA 388
             +L H  CRA
Sbjct: 405 YTLLVHGLCRA 415


>gi|302756343|ref|XP_002961595.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
 gi|300170254|gb|EFJ36855.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
          Length = 603

 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 92/397 (23%), Positives = 157/397 (39%), Gaps = 76/397 (19%)

Query: 100 SPYAWNLVVDLLGKNCLFDAMWDAIKSMKKE-NVLSLATFASVFSSYVVADRVKDAITTF 158
           SP  +N+++D   K  + +   D IK M ++ +V  + T+ +V      + RV++A+  F
Sbjct: 79  SPVTYNVIIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSGRVEEALLLF 138

Query: 159 DVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKE 217
           + ME+ GC  +  + N+++  +C+  K   A Q    ++ R I PD+ +Y IL++G  K 
Sbjct: 139 NEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEARDIPPDSWSYGILIDGLAKA 198

Query: 218 RDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGM 277
             +  A K F                                      +RM++ G  P  
Sbjct: 199 GKLNEAYKLF--------------------------------------RRMLDSGITPSA 220

Query: 278 TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLD 337
             + +          L  A  ++ +M  + G RP    +N++I  +C   +   A +LL 
Sbjct: 221 VTYNVVIHGMCLAYTLDEALELFKSMRSK-GCRPSRFTFNILIDAHCKRGKMDEAFRLLK 279

Query: 338 EMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK--------NENVLNHENCRAA 389
            M  +G  PD+ TY+ L   L    ++ +A  L  +MVK         +N L H  C+A 
Sbjct: 280 RMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAG 339

Query: 390 ----VRVYMD---SDDPYVAIKFWKYMIENHC------------SDLSETG--------N 422
                R  +D   S      +  +  ++  HC            SD+   G         
Sbjct: 340 RIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYT 399

Query: 423 LLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKL 459
            LV+GLC  + LPEA      M   G     F  + L
Sbjct: 400 ALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTAL 436



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 90/374 (24%), Positives = 143/374 (38%), Gaps = 41/374 (10%)

Query: 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDV 160
           +++ +++D L K    +  +   + M    +  S  T+  V     +A  + +A+  F  
Sbjct: 186 WSYGILIDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKS 245

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERD 219
           M   GC+   F  N L+ A C+ GK  +A++ L R+ D    PD  TY+ L+ G      
Sbjct: 246 MRSKGCRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIAR 305

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGM-T 278
           V +A+    +MV +    P  V    + LI  L     I E    L  M+  G +P + T
Sbjct: 306 VDDARHLLEDMV-KRQCKPTVVT--QNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVT 362

Query: 279 FFKLAFEECLTGQNLRGAEFI--------------WGAMVGRI----------------- 307
           +  L    C  GQ  R  E +              + A+V  +                 
Sbjct: 363 YNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMK 422

Query: 308 --GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLW 365
             G  P+   Y  +I  +C + +    +KL  EMV  G  PD   Y  L   L K  +  
Sbjct: 423 SSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSA 482

Query: 366 EASGLFNEMVKN--ENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNL 423
            A  +  E  ++        E  R AV   +D+    +A+ F + M+        E    
Sbjct: 483 RALEILREGRESLRSEAWGDEVYRFAVDGLLDAGKMEMALGFVRDMVRGGQLPAPERCAS 542

Query: 424 LVAGLCDMHMLPEA 437
           LVAGLC      EA
Sbjct: 543 LVAGLCKSGQGGEA 556



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 67/279 (24%), Positives = 122/279 (43%), Gaps = 4/279 (1%)

Query: 200 IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIY 259
           + PD+ +Y IL++G  K   + +A+  F + ++  G  P  V AY S LI  L   +   
Sbjct: 6   VSPDSWSYGILIDGLAKAGKLNDARDLF-QKLLHSGVTPSTV-AYTS-LIHGLCMANSFD 62

Query: 260 ETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMM 319
           +       M  RGC P    + +  +       L  A  +   M+   G  PD   YN +
Sbjct: 63  DARELFADMNRRGCPPSPVTYNVIIDASCKRGMLEEACDLIKKMI-EDGHVPDVVTYNTV 121

Query: 320 ISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNEN 379
           +   C S     A+ L +EM   G  P+ +++N +   L +  K+ +A  +F+EM   + 
Sbjct: 122 MDGLCKSGRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEARDI 181

Query: 380 VLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVK 439
             +  +    +     +     A K ++ M+++  +  + T N+++ G+C  + L EA++
Sbjct: 182 PPDSWSYGILIDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYTLDEALE 241

Query: 440 YAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKK 478
             K M  KG + + F  + L     K  K      LLK+
Sbjct: 242 LFKSMRSKGCRPSRFTFNILIDAHCKRGKMDEAFRLLKR 280


>gi|242062226|ref|XP_002452402.1| hypothetical protein SORBIDRAFT_04g025130 [Sorghum bicolor]
 gi|241932233|gb|EES05378.1| hypothetical protein SORBIDRAFT_04g025130 [Sorghum bicolor]
          Length = 506

 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 95/352 (26%), Positives = 147/352 (41%), Gaps = 45/352 (12%)

Query: 53  TVEDVLDKTL------IRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLND-KHSPYAWN 105
           +VED++ +TL      +R++    + +L+        A+ FF W+  +     H+P A N
Sbjct: 68  SVEDLV-RTLAAECSEVRLTSGVADSLLRRCGDDWKSALGFFLWAQSRGGGYSHTPCACN 126

Query: 106 LVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYG 165
            +VDLLGK    D MWD +  M    ++++ T A        A R +DAI  FD +E  G
Sbjct: 127 RMVDLLGKMRQIDRMWDLLSEMHCRGLVTVDTIAKSIRRLAAARRWRDAILLFDQLEDLG 186

Query: 166 CKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKK 225
            + +   +N LL A+C++ K   A +   ++   I PD  T+ I + GW   R +  A  
Sbjct: 187 LERNTETMNVLLDALCKERKVELAREVFVMLSPHIAPDAYTFNIFVHGWCSVRRIDEAMW 246

Query: 226 TFGEM--------------VIEV--------------------GWDPDNVPAYDSYLITL 251
           T  EM              V+E                     G  P NV  Y + ++T 
Sbjct: 247 TIEEMKNRGFPPIVITYTAVLEAYCKQRNFRRVYEILDSMSSQGCHP-NVITY-TMIMTS 304

Query: 252 LKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRP 311
           L  C+   E ++   RM   GC P   F+           +L  A  ++   + R     
Sbjct: 305 LTKCERFEEALSVSDRMKSSGCKPDTLFYNALINLLGRAGHLFEANQVFRVEMPRNVVPR 364

Query: 312 DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRK 363
           +   YN MIS+ C       A+ +L EM      PD+QTY  L   L  GR+
Sbjct: 365 NVATYNTMISILCQYGRDDDALDVLKEMEAQSCKPDLQTYQPLLRLLF-GRR 415


>gi|224086515|ref|XP_002307901.1| predicted protein [Populus trichocarpa]
 gi|222853877|gb|EEE91424.1| predicted protein [Populus trichocarpa]
          Length = 724

 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 90/343 (26%), Positives = 163/343 (47%), Gaps = 11/343 (3%)

Query: 111 LGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAIT-TFDVMEQYGCKHD 169
           L K C  D     +  +   NV+    F ++ + +V   R+ +A    +D M   G   D
Sbjct: 325 LCKTCRIDEAQALLSKVPGPNVVH---FNTLVNGFVRNGRLNEATAFVYDKMINNGYVPD 381

Query: 170 VFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFG 228
           VF  ++L++ +C+ G    A + +  +D +  KP+ +TY IL++G+ K+  +  A     
Sbjct: 382 VFTFSTLVNGLCKKGLFGSALELVNDMDAKGCKPNLNTYTILIDGFCKKGQLEEAGLILR 441

Query: 229 EMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGM-TFFKLAFEEC 287
           EM+ + G+  + V  Y++ LI+ L     I+E ++    M  +GC P + TF  L F  C
Sbjct: 442 EMLTK-GFSLNTV-GYNA-LISALCKHGKIHEALDMFGEMSSKGCKPDIFTFNSLIFGLC 498

Query: 288 LTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPD 347
              + +  A  ++  MV   G   ++  +N +I  +    E   A+KL+++M++ G   D
Sbjct: 499 RVDE-MEDALALYRDMVLE-GVIANSVTFNTLIHAFLRRGEIQEALKLVNDMLFRGCPLD 556

Query: 348 IQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWK 407
             TYN L + L K   + +  GLF EM++     +   C   +  +  +   + A++F +
Sbjct: 557 EITYNGLIKALCKTGAVEKGLGLFEEMIRKGLTPSIITCNILINGFCTAGKVHNALEFMR 616

Query: 408 YMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQ 450
            MI    S    T N L+ GLC    + EA+   + +  +GIQ
Sbjct: 617 DMIHRGFSPDIVTYNSLINGLCKRGRIQEALNLFEKLQAEGIQ 659



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 76/335 (22%), Positives = 137/335 (40%), Gaps = 39/335 (11%)

Query: 149 DRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTY 207
           DRV +A+   + M   GC  DV   N+++   CR  + ++  + + R++     P++ TY
Sbjct: 259 DRVDEALKLLEEMFLMGCPPDVNTFNTVIYGFCRLNRVLEGAKLVDRMILKGFTPNDMTY 318

Query: 208 AILLEGWEKERDVANAKKTFGEM-------------------------------VIEVGW 236
             L+ G  K   +  A+    ++                               +I  G+
Sbjct: 319 GYLMHGLCKTCRIDEAQALLSKVPGPNVVHFNTLVNGFVRNGRLNEATAFVYDKMINNGY 378

Query: 237 DPDNVPAYDSYLITLLKGCDGIYETVNSLKRMME-RGCNPGMTFFKLAFEE-CLTGQNLR 294
            PD V  + + +  L K   G++ +   L   M+ +GC P +  + +  +  C  GQ L 
Sbjct: 379 VPD-VFTFSTLVNGLCK--KGLFGSALELVNDMDAKGCKPNLNTYTILIDGFCKKGQ-LE 434

Query: 295 GAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNIL 354
            A  I   M+ + GF  +T  YN +IS  C   +   A+ +  EM   G  PDI T+N L
Sbjct: 435 EAGLILREMLTK-GFSLNTVGYNALISALCKHGKIHEALDMFGEMSSKGCKPDIFTFNSL 493

Query: 355 FEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHC 414
              L +  ++ +A  L+ +MV    + N       +  ++   +   A+K    M+   C
Sbjct: 494 IFGLCRVDEMEDALALYRDMVLEGVIANSVTFNTLIHAFLRRGEIQEALKLVNDMLFRGC 553

Query: 415 SDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
                T N L+  LC    + + +   + M  KG+
Sbjct: 554 PLDEITYNGLIKALCKTGAVEKGLGLFEEMIRKGL 588



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 64/253 (25%), Positives = 113/253 (44%), Gaps = 9/253 (3%)

Query: 133 LSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQF 192
           L+   + ++ S+     ++ +A+  F  M   GCK D+F  NSL+  +CR  +  DA   
Sbjct: 450 LNTVGYNALISALCKHGKIHEALDMFGEMSSKGCKPDIFTFNSLIFGLCRVDEMEDALAL 509

Query: 193 LR--VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLIT 250
            R  V++G I  ++ T+  L+  + +  ++  A K   +M+   G   D +  Y+  +  
Sbjct: 510 YRDMVLEGVI-ANSVTFNTLIHAFLRRGEIQEALKLVNDMLFR-GCPLDEI-TYNGLIKA 566

Query: 251 LLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEE-CLTGQNLRGAEFIWGAMVGRIGF 309
           L K    + + +   + M+ +G  P +    +     C  G+     EF+   M+ R GF
Sbjct: 567 LCK-TGAVEKGLGLFEEMIRKGLTPSIITCNILINGFCTAGKVHNALEFMRD-MIHR-GF 623

Query: 310 RPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASG 369
            PD   YN +I+  C       A+ L +++   G  PD  TYN L  +L +     +A  
Sbjct: 624 SPDIVTYNSLINGLCKRGRIQEALNLFEKLQAEGIQPDSITYNTLICWLCREGAFDDACF 683

Query: 370 LFNEMVKNENVLN 382
           L    V+N  V N
Sbjct: 684 LLYRGVENGFVPN 696



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 92/462 (19%), Positives = 171/462 (37%), Gaps = 76/462 (16%)

Query: 84  AVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL---------- 133
           +++ F+W+  Q    HS   + L++D LG    F  +   +  MK+E ++          
Sbjct: 87  SMEIFKWAGAQKGYCHSFSVYYLLIDKLGAAAGFKVIDRLLLQMKEEGIVFRESLFILIM 146

Query: 134 ---------------------------SLATFASVFSSYVVADRVKDAITTFDVMEQYGC 166
                                      S  ++  V    VV +    A   F  M   G 
Sbjct: 147 KYYGRAGLPGQATRLLLDMKGVYCCEPSFRSYNVVLDVLVVGNCPSVASNVFYDMLSKGV 206

Query: 167 KHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYAILLEGWEKERDVANAKK 225
             + +    ++ A+C   +  +A   LR +      P++  Y  L++   K   V  A K
Sbjct: 207 SPNDYTFGLVMKALCMVNEVDNACLLLRDMTKHGCVPNSMIYQTLIDALSKRDRVDEALK 266

Query: 226 TFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPG-MTFFKLAF 284
              EM + +G  PD V  +++ +    +  + + E    + RM+ +G  P  MT+  L  
Sbjct: 267 LLEEMFL-MGCPPD-VNTFNTVIYGFCR-LNRVLEGAKLVDRMILKGFTPNDMTYGYLMH 323

Query: 285 EECLT--------------GQNL-----------------RGAEFIWGAMVGRIGFRPDT 313
             C T              G N+                     F++  M+   G+ PD 
Sbjct: 324 GLCKTCRIDEAQALLSKVPGPNVVHFNTLVNGFVRNGRLNEATAFVYDKMINN-GYVPDV 382

Query: 314 HMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNE 373
             ++ +++  C     G+A++L+++M   G  P++ TY IL +   K  +L EA  +  E
Sbjct: 383 FTFSTLVNGLCKKGLFGSALELVNDMDAKGCKPNLNTYTILIDGFCKKGQLEEAGLILRE 442

Query: 374 MVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHM 433
           M+     LN     A +         + A+  +  M    C     T N L+ GLC +  
Sbjct: 443 MLTKGFSLNTVGYNALISALCKHGKIHEALDMFGEMSSKGCKPDIFTFNSLIFGLCRVDE 502

Query: 434 LPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEEL 475
           + +A+   + M  +G+       + L    +  R+  + E L
Sbjct: 503 MEDALALYRDMVLEGVIANSVTFNTLIHAFL--RRGEIQEAL 542


>gi|242045792|ref|XP_002460767.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
 gi|241924144|gb|EER97288.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
          Length = 762

 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 92/370 (24%), Positives = 160/370 (43%), Gaps = 15/370 (4%)

Query: 105 NLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQY 164
           ++V  L  K  + DA+      +  + +L  A + +V S +     +  A   FD M++ 
Sbjct: 334 SVVALLCDKGRVSDALTVVEDMVHHKVILDEAVYTTVLSGFCNKGDLVSARRWFDEMQRK 393

Query: 165 GCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYAILLEGWEKERDVANA 223
           G   D     +L++ +CR G+  +A + L+ ++  R+  D  TY +L++G+ K   +A A
Sbjct: 394 GLATDGVTYTTLINGLCRAGELKEAEKVLQEMLARRLDVDEVTYTVLVDGYCKRGKMAEA 453

Query: 224 KKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLA 283
            +    MV + G  P NV  Y +    L K  D     V +   ++    N G+      
Sbjct: 454 FQVHNTMV-QRGVAP-NVVTYTALSDGLCKQGD-----VQAANELLHEMSNKGLELNACT 506

Query: 284 FEECLTGQNLRGAEFIWGAM-----VGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDE 338
           +   + G  L  A ++  AM     +   G +PD + Y  +I   C S E   A  LL E
Sbjct: 507 YNSLING--LCKAGYLDQAMRTMADMDAAGLKPDVYTYTTLIDALCKSGELDRAHDLLQE 564

Query: 339 MVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDD 398
           M+ NG  P I TYN+L        ++     L   M++     N     + ++ Y   ++
Sbjct: 565 MLDNGIKPTIVTYNVLMNGFCMSGRVEGGKKLLEWMLEKNIHPNATTYNSLMKQYCIGNN 624

Query: 399 PYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSK 458
                + +K M   +      T N+L+ G C    + EA  +   M EKG ++T  + S 
Sbjct: 625 MKSTTEIYKGMCSRNVEPNENTYNILIKGHCKARSMKEAQYFHNEMIEKGFRLTASSYSA 684

Query: 459 LKQILIKARK 468
           L ++L K +K
Sbjct: 685 LIRLLNKKKK 694



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 77/329 (23%), Positives = 133/329 (40%), Gaps = 10/329 (3%)

Query: 54  VEDVLDKTLIRV--SQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSP--YAWNLVVD 109
            E VL + L R     E    VL   Y   G   + F+     +    +P    +  + D
Sbjct: 418 AEKVLQEMLARRLDVDEVTYTVLVDGYCKRGKMAEAFQVHNTMVQRGVAPNVVTYTALSD 477

Query: 110 LLGKNCLFDAMWDAIKSMKKENV-LSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKH 168
            L K     A  + +  M  + + L+  T+ S+ +    A  +  A+ T   M+  G K 
Sbjct: 478 GLCKQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKAGYLDQAMRTMADMDAAGLKP 537

Query: 169 DVFALNSLLSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYAILLEGWEKERDVANAKKTF 227
           DV+   +L+ A+C+ G+   A   L+ ++D  IKP   TY +L+ G+     V   KK  
Sbjct: 538 DVYTYTTLIDALCKSGELDRAHDLLQEMLDNGIKPTIVTYNVLMNGFCMSGRVEGGKKLL 597

Query: 228 GEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEEC 287
            E ++E    P N   Y+S +     G + +  T    K M  R   P    + +  +  
Sbjct: 598 -EWMLEKNIHP-NATTYNSLMKQYCIG-NNMKSTTEIYKGMCSRNVEPNENTYNILIKGH 654

Query: 288 LTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPD 347
              ++++ A++    M+ + GFR     Y+ +I L     +   A KL  +M   G   +
Sbjct: 655 CKARSMKEAQYFHNEMIEK-GFRLTASSYSALIRLLNKKKKFVEARKLFHDMRKEGFTAE 713

Query: 348 IQTYNILFEFLVKGRKLWEASGLFNEMVK 376
              YN   +F      L     L +E+V+
Sbjct: 714 PDVYNFYIDFNFNEDNLEATLALCDELVE 742



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 79/315 (25%), Positives = 126/315 (40%), Gaps = 16/315 (5%)

Query: 169 DVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFG 228
           +V + N LL  +C  G+  DA Q    +     PD  TY IL+ G+    ++ NA K   
Sbjct: 261 NVCSYNILLKVLCGAGRVEDARQLFDEMAS--PPDVVTYGILIHGYCALGELENAVKLLD 318

Query: 229 EMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECL 288
           +MV   G +P N   Y S +  L   CD     V+    ++E   +  +   +  +   L
Sbjct: 319 DMVAR-GVEP-NATVYTSVVALL---CDK--GRVSDALTVVEDMVHHKVILDEAVYTTVL 371

Query: 289 TGQNLRG---AEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAF 345
           +G   +G   +   W   + R G   D   Y  +I+  C + E   A K+L EM+     
Sbjct: 372 SGFCNKGDLVSARRWFDEMQRKGLATDGVTYTTLINGLCRAGELKEAEKVLQEMLARRLD 431

Query: 346 PDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKF 405
            D  TY +L +   K  K+ EA  + N MV+     N     A         D   A + 
Sbjct: 432 VDEVTYTVLVDGYCKRGKMAEAFQVHNTMVQRGVAPNVVTYTALSDGLCKQGDVQAANEL 491

Query: 406 WKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIK 465
              M        + T N L+ GLC    L +A++    M   G++   +  + L   L K
Sbjct: 492 LHEMSNKGLELNACTYNSLINGLCKAGYLDQAMRTMADMDAAGLKPDVYTYTTLIDALCK 551

Query: 466 A----RKEAVYEELL 476
           +    R   + +E+L
Sbjct: 552 SGELDRAHDLLQEML 566


>gi|356557763|ref|XP_003547180.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g14820, mitochondrial-like [Glycine max]
          Length = 492

 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 95/370 (25%), Positives = 161/370 (43%), Gaps = 47/370 (12%)

Query: 36  PPTIKTLCEIIAN--TPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAY 93
           P  ++ +C++I         +E VLD+  +R+S + V  +L+  + H  PA +FF W+  
Sbjct: 63  PAEVERVCKVIDELFALDRNMEAVLDECGVRLSHDLVVDMLQ-RFKHAXPAFRFFCWAGK 121

Query: 94  QLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKD 153
           +    H    +N ++ +LG+   F+ M   ++ M +  +L++ TF+    ++  A++ K 
Sbjct: 122 RPGFDHDSRTYNCMMCVLGRTRQFETMVAMLEEMGEMGLLTMETFSVAIKTFAEANQRKK 181

Query: 154 AITTFDVMEQYGCKHDVFALNSLLSAI--CRDGKTIDAWQFLRV----VDGRIKPDNDTY 207
           A   FD+M++Y  K  V  +N LL ++   + GK   A    RV    +D   KPD   +
Sbjct: 182 AAGIFDLMKKYEFKVGVDVINFLLDSLSAAKLGKEAQAVFEKRVWNEMIDRGFKPDIVAH 241

Query: 208 AILLEGWEKER--------DVANAK-------------------KTFGEMVIEVGWDPDN 240
            ++LEG  K +        ++  AK                   K  GE+V  +    D 
Sbjct: 242 NVMLEGLLKCKKSDAXKLFEIMKAKCPSPNVRSYTIMIQDFCKQKMMGEVVEYIDEMVDR 301

Query: 241 VPAYDSYLITLL-------KGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNL 293
               D+ L T L       K  D +Y   N LK M +RGC+P    +    +   + Q  
Sbjct: 302 ECQPDAALYTCLITGFGXKKKMDMVY---NLLKEMRKRGCSPDGGTYNALIKLXTSQQMP 358

Query: 294 RGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNI 353
             A  I+  M  + G +P  H YNM++  Y  +        + D M   G  PD  +Y++
Sbjct: 359 DDAVRIYKKM-SQSGIKPTIHTYNMIMRSYFVTKNYEIGHAIWDXMHQKGCCPDDNSYSV 417

Query: 354 LFEFLVKGRK 363
               L KG K
Sbjct: 418 YIGMLEKGMK 427


>gi|8778650|gb|AAF79658.1|AC025416_32 F5O11.4 [Arabidopsis thaliana]
          Length = 975

 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 78/297 (26%), Positives = 138/297 (46%), Gaps = 5/297 (1%)

Query: 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR 194
           L T  ++ +   ++ +  +A+   D M +YGC+ +      +L+ +C+ G+T  A + LR
Sbjct: 291 LITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLR 350

Query: 195 VVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLK 253
            ++ R IK D   Y+I+++G  K   + NA   F EM  E+     N+  Y+  LI    
Sbjct: 351 KMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEM--EMKGITTNIITYN-ILIGGFC 407

Query: 254 GCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDT 313
                 +    L+ M++R  NP +  F +  +  +    LR AE +   M+ R G  PDT
Sbjct: 408 NAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHR-GIAPDT 466

Query: 314 HMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNE 373
             Y  +I  +C  N    A +++D MV  G  P+I+T+NIL     K  ++ +   LF +
Sbjct: 467 ITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRK 526

Query: 374 MVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCD 430
           M     V +       ++ + +     VA + ++ M+         T  +L+ GLCD
Sbjct: 527 MSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCD 583



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 79/385 (20%), Positives = 156/385 (40%), Gaps = 47/385 (12%)

Query: 99  HSPYAWNLVVDLL---GKNCL-FDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDA 154
           H+ Y  +++++      K CL F AM   IK   + N +   TF+++ +   +  RV +A
Sbjct: 219 HNLYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTI---TFSTLINGLCLEGRVSEA 275

Query: 155 ITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEG 213
           +   D M + G K D+  +N+L++ +C  GK  +A   + ++V+   +P+  TY  +L  
Sbjct: 276 LELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNV 335

Query: 214 WEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGC 273
             K    A A +                                       L++M ER  
Sbjct: 336 MCKSGQTALAMEL--------------------------------------LRKMEERNI 357

Query: 274 NPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAM 333
                 + +  +      +L  A  ++  M  + G   +   YN++I  +C +       
Sbjct: 358 KLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMK-GITTNIITYNILIGGFCNAGRWDDGA 416

Query: 334 KLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVY 393
           KLL +M+     P++ T+++L +  VK  KL EA  L  EM+      +     + +  +
Sbjct: 417 KLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGF 476

Query: 394 MDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTP 453
              +    A +    M+   C     T N+L+ G C  + + + ++  + M+ +G+    
Sbjct: 477 CKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADT 536

Query: 454 FALSKLKQILIKARKEAVYEELLKK 478
              + L Q   +  K  V +EL ++
Sbjct: 537 VTYNTLIQGFCELGKLNVAKELFQE 561



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 68/289 (23%), Positives = 125/289 (43%), Gaps = 16/289 (5%)

Query: 122 DAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAIC 181
           D IK     NV+   TF+ +  S+V   ++++A      M   G   D     SL+   C
Sbjct: 421 DMIKRKINPNVV---TFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFC 477

Query: 182 RDGKTIDAWQFLRV-VDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDN 240
           ++     A Q + + V     P+  T+ IL+ G+ K   + +  + F +M +  G   D 
Sbjct: 478 KENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLR-GVVADT 536

Query: 241 VPAYDSYLITLLKG-CD-GIYETVNSL-KRMMERGCNPGMTFFKLAFEE-CLTGQNLRGA 296
           V  Y+    TL++G C+ G       L + M+ R   P +  +K+  +  C  G++ +  
Sbjct: 537 V-TYN----TLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKAL 591

Query: 297 EFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFE 356
           E      + +     D  +YN++I   C +++   A  L   +   G  P ++TYNI+  
Sbjct: 592 EIF--EKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIG 649

Query: 357 FLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKF 405
            L K   L EA  LF +M ++ +  +       +R ++   D   ++K 
Sbjct: 650 GLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKL 698



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/233 (22%), Positives = 97/233 (41%), Gaps = 19/233 (8%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-F 192
           ++ TF  + + Y  A+R+ D +  F  M   G   D    N+L+   C  GK   A + F
Sbjct: 500 NIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELF 559

Query: 193 LRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTF-----GEMVIEVGWDPDNVPAYDSY 247
             +V  ++ P+  TY ILL+G     +   A + F      +M +++G           Y
Sbjct: 560 QEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIG----------IY 609

Query: 248 LITLLKGCDG--IYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVG 305
            I +   C+   + +  +    +  +G  PG+  + +          L  AE ++  M  
Sbjct: 610 NIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKM-E 668

Query: 306 RIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFL 358
             G  PD   YN++I  +    +   ++KL++E+   G   D  T  ++ + L
Sbjct: 669 EDGHAPDGWTYNILIRAHLGDGDATKSVKLIEELKRCGFSVDASTIKMVIDML 721


>gi|15221282|ref|NP_172694.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122242333|sp|Q0WKV3.1|PPR36_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g12300, mitochondrial; Flags: Precursor
 gi|110741411|dbj|BAF02254.1| hypothetical protein [Arabidopsis thaliana]
 gi|332190743|gb|AEE28864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 637

 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 79/300 (26%), Positives = 141/300 (47%), Gaps = 11/300 (3%)

Query: 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR 194
           L T  ++ +   ++ +  +A+   D M +YGC+ +      +L+ +C+ G+T  A + LR
Sbjct: 193 LITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLR 252

Query: 195 VVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLK 253
            ++ R IK D   Y+I+++G  K   + NA   F EM  E+     N+  Y+     L+ 
Sbjct: 253 KMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEM--EMKGITTNIITYN----ILIG 306

Query: 254 G-CDGIY--ETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFR 310
           G C+     +    L+ M++R  NP +  F +  +  +    LR AE +   M+ R G  
Sbjct: 307 GFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHR-GIA 365

Query: 311 PDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGL 370
           PDT  Y  +I  +C  N    A +++D MV  G  P+I+T+NIL     K  ++ +   L
Sbjct: 366 PDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLEL 425

Query: 371 FNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCD 430
           F +M     V +       ++ + +     VA + ++ M+         T  +L+ GLCD
Sbjct: 426 FRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCD 485



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 79/385 (20%), Positives = 156/385 (40%), Gaps = 47/385 (12%)

Query: 99  HSPYAWNLVVDLLG---KNCL-FDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDA 154
           H+ Y  +++++      K CL F AM   IK   + N +   TF+++ +   +  RV +A
Sbjct: 121 HNLYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTI---TFSTLINGLCLEGRVSEA 177

Query: 155 ITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEG 213
           +   D M + G K D+  +N+L++ +C  GK  +A   + ++V+   +P+  TY  +L  
Sbjct: 178 LELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNV 237

Query: 214 WEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGC 273
             K    A A +                                       L++M ER  
Sbjct: 238 MCKSGQTALAMEL--------------------------------------LRKMEERNI 259

Query: 274 NPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAM 333
                 + +  +      +L  A  ++  M  + G   +   YN++I  +C +       
Sbjct: 260 KLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMK-GITTNIITYNILIGGFCNAGRWDDGA 318

Query: 334 KLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVY 393
           KLL +M+     P++ T+++L +  VK  KL EA  L  EM+      +     + +  +
Sbjct: 319 KLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGF 378

Query: 394 MDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTP 453
              +    A +    M+   C     T N+L+ G C  + + + ++  + M+ +G+    
Sbjct: 379 CKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADT 438

Query: 454 FALSKLKQILIKARKEAVYEELLKK 478
              + L Q   +  K  V +EL ++
Sbjct: 439 VTYNTLIQGFCELGKLNVAKELFQE 463



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 68/291 (23%), Positives = 126/291 (43%), Gaps = 16/291 (5%)

Query: 120 MWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSA 179
           + D IK     NV+   TF+ +  S+V   ++++A      M   G   D     SL+  
Sbjct: 321 LRDMIKRKINPNVV---TFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDG 377

Query: 180 ICRDGKTIDAWQFLRV-VDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDP 238
            C++     A Q + + V     P+  T+ IL+ G+ K   + +  + F +M +  G   
Sbjct: 378 FCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLR-GVVA 436

Query: 239 DNVPAYDSYLITLLKG-CD-GIYETVNSL-KRMMERGCNPGMTFFKLAFEE-CLTGQNLR 294
           D V  Y+    TL++G C+ G       L + M+ R   P +  +K+  +  C  G++ +
Sbjct: 437 DTV-TYN----TLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEK 491

Query: 295 GAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNIL 354
             E      + +     D  +YN++I   C +++   A  L   +   G  P ++TYNI+
Sbjct: 492 ALEIF--EKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIM 549

Query: 355 FEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKF 405
              L K   L EA  LF +M ++ +  +       +R ++   D   ++K 
Sbjct: 550 IGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKL 600



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 55/232 (23%), Positives = 98/232 (42%), Gaps = 9/232 (3%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-F 192
           ++ TF  + + Y  A+R+ D +  F  M   G   D    N+L+   C  GK   A + F
Sbjct: 402 NIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELF 461

Query: 193 LRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
             +V  ++ P+  TY ILL+G     +   A + F +  IE      ++  Y+  +  + 
Sbjct: 462 QEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEK--IEKSKMELDIGIYNIIIHGMC 519

Query: 253 KG--CDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFR 310
                D  ++   SL     +G  PG+  + +          L  AE ++  M    G  
Sbjct: 520 NASKVDDAWDLFCSLPL---KGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKM-EEDGHA 575

Query: 311 PDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGR 362
           PD   YN++I  +    +   ++KL++E+   G   D  T  ++ + L  GR
Sbjct: 576 PDGWTYNILIRAHLGDGDATKSVKLIEELKRCGFSVDASTIKMVIDMLSDGR 627


>gi|297849642|ref|XP_002892702.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338544|gb|EFH68961.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 667

 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 89/346 (25%), Positives = 156/346 (45%), Gaps = 12/346 (3%)

Query: 99  HSPYAWNLVVDLLGKNCLFDAMWDAI-KSMKKENVLSLATFASVFSSYVVADRVKDAITT 157
           H+ Y  N++++   + C     +  + K MK        TF ++ +   +  +V +A+  
Sbjct: 98  HNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLINGLCLESKVSEAVVL 157

Query: 158 FDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEK 216
              M + GC+ +V   NS+++ IC+ G T  A   LR +D R +K D  TY+ +++   +
Sbjct: 158 VARMVENGCQPNVVTYNSIVNGICKSGDTSLALDLLRKMDERNVKADVFTYSTIIDSLCR 217

Query: 217 ERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC---DGIYETVNSLKRMMERGC 273
           +  +  A   F EM  E      ++  Y+S +  L K     DG    V  LK M  R  
Sbjct: 218 DGCIDAAISLFKEM--ETKGIKSSLVTYNSLVGGLCKAGKWNDG----VQLLKDMTSRKI 271

Query: 274 NPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAM 333
            P +  F +  +  +    L+ A  ++  M+ + G  P+T  YN ++  YC  N    A 
Sbjct: 272 IPNVITFNVLIDVFVKEGKLQEANELYKEMITK-GISPNTITYNSLMDGYCMQNRLSEAN 330

Query: 334 KLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVY 393
            +LD MV N   PDI T+  L +   K +++ E   LF ++ K   V N       V+ +
Sbjct: 331 NMLDLMVRNNCSPDIVTFTSLIKGYCKVKRVDEGMKLFRKISKRGLVANTVTYSILVQGF 390

Query: 394 MDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVK 439
             S    +A + ++ M+         T  +L+ GLCD   L +A++
Sbjct: 391 CQSGKLEIAEELFQEMVSLGVLPDVMTYGILLDGLCDNGKLEKALE 436



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 84/346 (24%), Positives = 150/346 (43%), Gaps = 5/346 (1%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           SL  F+  FS      +    +     ME  G  H+++ LN +++  CR  KT  A+  L
Sbjct: 64  SLVDFSRFFSGVASTKQFNLVLDFCKKMELNGIAHNIYTLNIMINCFCRCCKTCFAYSVL 123

Query: 194 -RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
            +V+    +PD  T+  L+ G   E  V+ A      MV E G  P NV  Y+S +  + 
Sbjct: 124 GKVMKLGYEPDTTTFNTLINGLCLESKVSEAVVLVARMV-ENGCQP-NVVTYNSIVNGIC 181

Query: 253 KGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD 312
           K  D     ++ L++M ER     +  +    +       +  A  ++  M  + G +  
Sbjct: 182 KSGDTSL-ALDLLRKMDERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETK-GIKSS 239

Query: 313 THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFN 372
              YN ++   C + +    ++LL +M      P++ T+N+L +  VK  KL EA+ L+ 
Sbjct: 240 LVTYNSLVGGLCKAGKWNDGVQLLKDMTSRKIIPNVITFNVLIDVFVKEGKLQEANELYK 299

Query: 373 EMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMH 432
           EM+      N     + +  Y   +    A      M+ N+CS    T   L+ G C + 
Sbjct: 300 EMITKGISPNTITYNSLMDGYCMQNRLSEANNMLDLMVRNNCSPDIVTFTSLIKGYCKVK 359

Query: 433 MLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKK 478
            + E +K  + ++++G+       S L Q   ++ K  + EEL ++
Sbjct: 360 RVDEGMKLFRKISKRGLVANTVTYSILVQGFCQSGKLEIAEELFQE 405



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 75/285 (26%), Positives = 136/285 (47%), Gaps = 20/285 (7%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVLS-LATFASVFSSYVVADRVKDAITTFDVM 161
            +N +V+ + K+       D ++ M + NV + + T++++  S      +  AI+ F  M
Sbjct: 172 TYNSIVNGICKSGDTSLALDLLRKMDERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEM 231

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDV 220
           E  G K  +   NSL+  +C+ GK  D  Q L+ +  R I P+  T+ +L++ + KE  +
Sbjct: 232 ETKGIKSSLVTYNSLVGGLCKAGKWNDGVQLLKDMTSRKIIPNVITFNVLIDVFVKEGKL 291

Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDG------IYETVNSLKRMMERGCN 274
             A + + EM+ + G  P+ +  Y+S +       DG      + E  N L  M+   C+
Sbjct: 292 QEANELYKEMITK-GISPNTI-TYNSLM-------DGYCMQNRLSEANNMLDLMVRNNCS 342

Query: 275 PGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAM 333
           P + TF  L    C   +   G +      + + G   +T  Y++++  +C S +   A 
Sbjct: 343 PDIVTFTSLIKGYCKVKRVDEGMKLFRK--ISKRGLVANTVTYSILVQGFCQSGKLEIAE 400

Query: 334 KLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNE 378
           +L  EMV  G  PD+ TY IL + L    KL +A  +F ++ K++
Sbjct: 401 ELFQEMVSLGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSK 445



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 63/296 (21%), Positives = 119/296 (40%), Gaps = 47/296 (15%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVM 161
            +N+++D+  K        +  K M  + +  +  T+ S+   Y + +R+ +A    D+M
Sbjct: 277 TFNVLIDVFVKEGKLQEANELYKEMITKGISPNTITYNSLMDGYCMQNRLSEANNMLDLM 336

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDV 220
            +  C  D+    SL+   C+  +  +  +  R +  R +  +  TY+IL++G+ +   +
Sbjct: 337 VRNNCSPDIVTFTSLIKGYCKVKRVDEGMKLFRKISKRGLVANTVTYSILVQGFCQSGKL 396

Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDG--------IYETVNSLKR----- 267
             A++ F EMV  +G  PD +    +Y I L   CD         I+E +   K      
Sbjct: 397 EIAEELFQEMV-SLGVLPDVM----TYGILLDGLCDNGKLEKALEIFEDLQKSKMNLDIV 451

Query: 268 ----MMERGCNPG---------------------MTFFKLAFEECLTGQNLRGAEFIWGA 302
               ++E  C  G                     MT+  +    C  G +L  A  +   
Sbjct: 452 MYTIIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKG-SLSEANILLRK 510

Query: 303 MVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFL 358
           M    G  P+   YN +I  +    +  A+ KL++EM   G   D  +  ++ + L
Sbjct: 511 M-EEDGNEPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVIDML 565


>gi|115487378|ref|NP_001066176.1| Os12g0152600 [Oryza sativa Japonica Group]
 gi|77553036|gb|ABA95832.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113648683|dbj|BAF29195.1| Os12g0152600 [Oryza sativa Japonica Group]
 gi|125535802|gb|EAY82290.1| hypothetical protein OsI_37500 [Oryza sativa Indica Group]
 gi|125578525|gb|EAZ19671.1| hypothetical protein OsJ_35247 [Oryza sativa Japonica Group]
          Length = 716

 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 90/326 (27%), Positives = 145/326 (44%), Gaps = 23/326 (7%)

Query: 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR 194
           L T+ S+ + Y  A  +K+A+  F  +++ G    V   N LL   CR G   +A +F +
Sbjct: 372 LITYNSLINGYCKAGNLKEALWLFGDLKRAGLAPSVLTYNILLDGYCRLGDLEEARRFKQ 431

Query: 195 -VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYL-ITLL 252
            +V+   +PD  TY IL+ G  K R++A  ++ F EM+ + G  PD   AY++ +   L+
Sbjct: 432 EMVEQGCQPDVSTYTILMNGSRKVRNLAMVREFFDEMLSK-GLQPDCF-AYNTRISAELI 489

Query: 253 KGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD 312
            G     E     + M+ RG +     + +  +      NL+ A  +W  MV   G +PD
Sbjct: 490 LGSTS--EAFQLTEVMISRGISSDTVTYNIFLDGLCKSGNLKDAYVLWMKMVSD-GLQPD 546

Query: 313 THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFN 372
              Y  +I  +C       A  + D M+ +G  P   TY +      +   L+ A G F 
Sbjct: 547 CITYTCLIHAHCERGRLREARDIFDGMLVSGLPPSAVTYTVFIHAYCRRGNLYSAYGWFQ 606

Query: 373 EMVK-----NE---NVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLL 424
           +M++     NE   NVL H  CR      M   +  +A + +  M+E   S    T  LL
Sbjct: 607 KMLEEGVRPNEVTYNVLIHALCR------MGRTN--LAYQHFHEMLERGLSPNKYTYTLL 658

Query: 425 VAGLCDMHMLPEAVKYAKGMAEKGIQ 450
           + G C      EA++    M + GI 
Sbjct: 659 IDGNCKEGNWEEAIRLYSEMHQHGIH 684



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 85/343 (24%), Positives = 138/343 (40%), Gaps = 17/343 (4%)

Query: 118 DAMWDAIKSMKKENVL-----SLATFASVFSSYVVADRVKDAITTFDVMEQY--GCKHDV 170
           +A WD ++S+  E +      S+ T+ ++  S+    RV  A      ME    GC    
Sbjct: 209 EARWDDMRSVYAEMLQLGIEPSIVTYNTLLDSFFREGRVDQAAKLLREMEARPGGCLPSD 268

Query: 171 FALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEM 230
              N +++ + R G+   A Q +  +    K    T+  L+ G+     V  A     EM
Sbjct: 269 VTYNVVINGLARKGELEKAAQLVDRMRMSKKASAFTFNPLITGYFARGSVEKAGALQLEM 328

Query: 231 VIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGM-TFFKLAFEECLT 289
             E G  P  V  Y++ +  + +  + +         M   G  P + T+  L    C  
Sbjct: 329 ENE-GIVP-TVVTYNTIIHGMFRSGN-VEAARMKFVEMRAMGLLPDLITYNSLINGYCKA 385

Query: 290 GQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQ 349
           G NL+ A +++G +  R G  P    YN+++  YC   +   A +   EMV  G  PD+ 
Sbjct: 386 G-NLKEALWLFGDL-KRAGLAPSVLTYNILLDGYCRLGDLEEARRFKQEMVEQGCQPDVS 443

Query: 350 TYNILFEFLVKGRKLWEASGLFNEMVKN--ENVLNHENCRAAVRVYMDSDDPYVAIKFWK 407
           TY IL     K R L      F+EM+    +      N R +  + + S     A +  +
Sbjct: 444 TYTILMNGSRKVRNLAMVREFFDEMLSKGLQPDCFAYNTRISAELILGSTSE--AFQLTE 501

Query: 408 YMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQ 450
            MI    S  + T N+ + GLC    L +A      M   G+Q
Sbjct: 502 VMISRGISSDTVTYNIFLDGLCKSGNLKDAYVLWMKMVSDGLQ 544



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 57/231 (24%), Positives = 100/231 (43%), Gaps = 13/231 (5%)

Query: 138 FASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQF-LRVV 196
           + +  S+ ++     +A    +VM   G   D    N  L  +C+ G   DA+   +++V
Sbjct: 480 YNTRISAELILGSTSEAFQLTEVMISRGISSDTVTYNIFLDGLCKSGNLKDAYVLWMKMV 539

Query: 197 DGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC- 255
              ++PD  TY  L+    +   +  A+  F  M++  G  P  V    +Y + +   C 
Sbjct: 540 SDGLQPDCITYTCLIHAHCERGRLREARDIFDGMLVS-GLPPSAV----TYTVFIHAYCR 594

Query: 256 -DGIYETVNSLKRMMERGCNPG-MTFFKLAFEECLTGQ-NLRGAEFIWGAMVGRIGFRPD 312
              +Y      ++M+E G  P  +T+  L    C  G+ NL    F    M+ R G  P+
Sbjct: 595 RGNLYSAYGWFQKMLEEGVRPNEVTYNVLIHALCRMGRTNLAYQHF--HEMLER-GLSPN 651

Query: 313 THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRK 363
            + Y ++I   C       A++L  EM  +G  PD  T+N LF+   +G+ 
Sbjct: 652 KYTYTLLIDGNCKEGNWEEAIRLYSEMHQHGIHPDHCTHNALFKGFDEGQS 702



 Score = 43.9 bits (102), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 53/108 (49%), Gaps = 2/108 (1%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-F 192
           S  T+     +Y     +  A   F  M + G + +    N L+ A+CR G+T  A+Q F
Sbjct: 581 SAVTYTVFIHAYCRRGNLYSAYGWFQKMLEEGVRPNEVTYNVLIHALCRMGRTNLAYQHF 640

Query: 193 LRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDN 240
             +++  + P+  TY +L++G  KE +   A + + EM  + G  PD+
Sbjct: 641 HEMLERGLSPNKYTYTLLIDGNCKEGNWEEAIRLYSEMH-QHGIHPDH 687


>gi|302787647|ref|XP_002975593.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
 gi|300156594|gb|EFJ23222.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
          Length = 471

 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 92/342 (26%), Positives = 158/342 (46%), Gaps = 9/342 (2%)

Query: 100 SPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITT- 157
           S Y +N +++   K        +  K+M ++     + T++++ S      +V +A+   
Sbjct: 77  SIYTYNSLLNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTIISGLCKTGKVTEALEML 136

Query: 158 FDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEK 216
           F  M + GC  +  A N+L++ +C+D     A++ L  +  +   PDN TY  +L G  +
Sbjct: 137 FHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYVPDNITYNTILSGLCR 196

Query: 217 ERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDG-IYETVNSLKRMMERGCNP 275
              V+ AK+ F  M    G+ PD V AY+  L  L K  +G   E +   K ++ +G  P
Sbjct: 197 MGKVSEAKQFFDSMPSR-GYSPD-VVAYNGLLDALYK--EGKTDEAMKLFKDVIAKGYMP 252

Query: 276 GMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKL 335
               +           N+  AE ++  MV   G  P+   Y++++S +C + +   A K+
Sbjct: 253 DTVTYNSILLGLARKSNMDEAEEMFKKMVAS-GCAPNGATYSIVLSGHCRAKKVDDAHKV 311

Query: 336 LDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMD 395
           L+EM   GA PD+ TYNIL + L K   + +A  LF+ MV N    +  +    +     
Sbjct: 312 LEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCK 371

Query: 396 SDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEA 437
           ++  + A   +  MIE        T N+L+ GLC    L EA
Sbjct: 372 TNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEA 413



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 81/288 (28%), Positives = 134/288 (46%), Gaps = 12/288 (4%)

Query: 166 CKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDVANAK 224
           C  + +    +L + C+ GK  D ++ F +++D  I PD   Y IL++G+ K+  V  A 
Sbjct: 4   CSPNRYTFRVVLKSFCKQGKLRDGYKLFEQMLDNGISPDGIEYNILIDGYAKKGRVDEAN 63

Query: 225 KTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGM-TFFKLA 283
           + + EMV  VG +P ++  Y+S L    K    + E +   K M E+G  P + T+  + 
Sbjct: 64  RLYEEMV-SVGLEP-SIYTYNSLLNAFCKETK-MKEAMELFKTMAEKGFEPDVVTYSTII 120

Query: 284 FEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNG 343
              C TG+     E ++  M+ R G   +T  YN +I+  C       A KLL+EM   G
Sbjct: 121 SGLCKTGKVTEALEMLFHKMIER-GCSANTVAYNALINGLCKDENIERAYKLLEEMASKG 179

Query: 344 AFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK---NENVLNHENCRAAVRVYMDSDDPY 400
             PD  TYN +   L +  K+ EA   F+ M     + +V+ +     A+     +D+  
Sbjct: 180 YVPDNITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKTDE-- 237

Query: 401 VAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448
            A+K +K +I       + T N ++ GL     + EA +  K M   G
Sbjct: 238 -AMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVASG 284



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 74/277 (26%), Positives = 129/277 (46%), Gaps = 10/277 (3%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSM-KKENVLSLATFASVFSSYVVADRVKDAITTFDVM 161
           A+N +++ L K+   +  +  ++ M  K  V    T+ ++ S      +V +A   FD M
Sbjct: 151 AYNALINGLCKDENIERAYKLLEEMASKGYVPDNITYNTILSGLCRMGKVSEAKQFFDSM 210

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYAILLEGWEKERDV 220
              G   DV A N LL A+ ++GKT +A +  + V+     PD  TY  +L G  ++ ++
Sbjct: 211 PSRGYSPDVVAYNGLLDALYKEGKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNM 270

Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDG--IYETVNSLKRMMERGCNPGMT 278
             A++ F +MV   G  P+      +Y I L   C    + +    L+ M + G  P + 
Sbjct: 271 DEAEEMFKKMVAS-GCAPNGA----TYSIVLSGHCRAKKVDDAHKVLEEMSKIGAVPDVV 325

Query: 279 FFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDE 338
            + +  +       +  A  ++  MV   G  PD   Y+++++  C +N+   A  L D 
Sbjct: 326 TYNILLDGLCKTNLVDKAHELFSTMVDN-GCAPDIVSYSVVLNGLCKTNKVHDARVLFDR 384

Query: 339 MVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
           M+     PD+ T+NIL + L K  KL EA  L ++M 
Sbjct: 385 MIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDQMT 421



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 76/310 (24%), Positives = 137/310 (44%), Gaps = 6/310 (1%)

Query: 141 VFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR- 199
           +   Y    RV +A   ++ M   G +  ++  NSLL+A C++ K  +A +  + +  + 
Sbjct: 49  LIDGYAKKGRVDEANRLYEEMVSVGLEPSIYTYNSLLNAFCKETKMKEAMELFKTMAEKG 108

Query: 200 IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIY 259
            +PD  TY+ ++ G  K   V  A +     +IE G   + V AY++ +  L K  + I 
Sbjct: 109 FEPDVVTYSTIISGLCKTGKVTEALEMLFHKMIERGCSANTV-AYNALINGLCKD-ENIE 166

Query: 260 ETVNSLKRMMERGCNP-GMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNM 318
                L+ M  +G  P  +T+  +    C  G+     +F + +M  R G+ PD   YN 
Sbjct: 167 RAYKLLEEMASKGYVPDNITYNTILSGLCRMGKVSEAKQF-FDSMPSR-GYSPDVVAYNG 224

Query: 319 MISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNE 378
           ++       +T  AMKL  +++  G  PD  TYN +   L +   + EA  +F +MV + 
Sbjct: 225 LLDALYKEGKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVASG 284

Query: 379 NVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAV 438
              N       +  +  +     A K  + M +        T N+L+ GLC  +++ +A 
Sbjct: 285 CAPNGATYSIVLSGHCRAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAH 344

Query: 439 KYAKGMAEKG 448
           +    M + G
Sbjct: 345 ELFSTMVDNG 354



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 52/181 (28%), Positives = 76/181 (41%), Gaps = 6/181 (3%)

Query: 271 RGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETG 330
           R C+P    F++  +       LR    ++  M+   G  PD   YN++I  Y       
Sbjct: 2   RECSPNRYTFRVVLKSFCKQGKLRDGYKLFEQMLDN-GISPDGIEYNILIDGYAKKGRVD 60

Query: 331 AAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKN---ENVLNHENCR 387
            A +L +EMV  G  P I TYN L     K  K+ EA  LF  M +     +V+ +    
Sbjct: 61  EANRLYEEMVSVGLEPSIYTYNSLLNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTII 120

Query: 388 AAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEK 447
           + +          + + F K MIE  CS  +   N L+ GLC    +  A K  + MA K
Sbjct: 121 SGL-CKTGKVTEALEMLFHK-MIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASK 178

Query: 448 G 448
           G
Sbjct: 179 G 179



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/205 (23%), Positives = 88/205 (42%), Gaps = 2/205 (0%)

Query: 265 LKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYC 324
            ++M++ G +P    + +  +       +  A  ++  MV  +G  P  + YN +++ +C
Sbjct: 31  FEQMLDNGISPDGIEYNILIDGYAKKGRVDEANRLYEEMVS-VGLEPSIYTYNSLLNAFC 89

Query: 325 YSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEA-SGLFNEMVKNENVLNH 383
              +   AM+L   M   G  PD+ TY+ +   L K  K+ EA   LF++M++     N 
Sbjct: 90  KETKMKEAMELFKTMAEKGFEPDVVTYSTIISGLCKTGKVTEALEMLFHKMIERGCSANT 149

Query: 384 ENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKG 443
               A +      ++   A K  + M        + T N +++GLC M  + EA ++   
Sbjct: 150 VAYNALINGLCKDENIERAYKLLEEMASKGYVPDNITYNTILSGLCRMGKVSEAKQFFDS 209

Query: 444 MAEKGIQVTPFALSKLKQILIKARK 468
           M  +G      A + L   L K  K
Sbjct: 210 MPSRGYSPDVVAYNGLLDALYKEGK 234


>gi|225441858|ref|XP_002278530.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g79540-like [Vitis vinifera]
          Length = 798

 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 112/441 (25%), Positives = 182/441 (41%), Gaps = 68/441 (15%)

Query: 46  IANTPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAW- 104
           +  T +P +ED L+K    +S E V  V++     P    +FF W+      + S  +W 
Sbjct: 44  VMETVNP-MEDALEKLAPFLSSEIVNDVMR-EQRRPELGFRFFIWTT----RRRSFRSWV 97

Query: 105 --NLVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASVFSSYVVADRVKDAITTFDVM 161
             NLV+D+L K+  FD  W  ++ +K  N+ +   TF+ + ++Y  +   + A+ +F  M
Sbjct: 98  THNLVIDMLAKDDGFDTYWKILEELKNSNIQIPPPTFSVLIAAYAKSGMAEKAVESFGKM 157

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDV 220
           + +GCK DVF  NS+L  + +    + A   + +++     P+  T+ ILL G  K    
Sbjct: 158 KDFGCKPDVFTYNSILHVMVQKEVFLLALAVYNQMLKLNYNPNRATFVILLNGLCKNGKT 217

Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL--KGCDGIYETVNSLKRMMERGCNP-GM 277
            +A K F EM  +    P N   Y   L  L   K  D ++  +N++K     GC P  +
Sbjct: 218 DDALKMFDEMTQK--GIPPNTMIYTIILSGLCQAKRTDDVHRLLNTMK---VSGCCPDSI 272

Query: 278 TFFKLAFEECLTGQ------------------NLRGAEFI---------------WGAMV 304
           T   L    C  GQ                   ++G   +               W   +
Sbjct: 273 TCNALLDGFCKLGQIDEAFALLQLFEKEGYVLGIKGYSSLIDGLFRAKRYDEVQEWCRKM 332

Query: 305 GRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKL 364
            + G  PD  +Y ++I  +C       A+ +L++M   G  PD   YN L +       L
Sbjct: 333 FKAGIEPDVVLYTILIRGFCEVGMVDYALNMLNDMTQRGLSPDTYCYNALIKGFCDVGLL 392

Query: 365 WEASGLFNEMVKNE--------NVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSD 416
            +A  L  E+ KN+         +L    CR  +   +D      A + +  M    CS 
Sbjct: 393 DKARSLQLEISKNDCFPTSCTYTILICGMCRNGL---LDE-----ARQIFNQMENLGCSP 444

Query: 417 LSETGNLLVAGLCDMHMLPEA 437
              T N L+ GLC    L EA
Sbjct: 445 SIMTFNALIDGLCKAGELEEA 465



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 96/218 (44%), Gaps = 35/218 (16%)

Query: 167 KHDVFALNS----LLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVA 221
           K+D F  +     L+  +CR+G   +A Q    ++     P   T+  L++G  K  ++ 
Sbjct: 404 KNDCFPTSCTYTILICGMCRNGLLDEARQIFNQMENLGCSPSIMTFNALIDGLCKAGELE 463

Query: 222 NAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTF-- 279
            A+  F +M  E+G +P       S  + L +G D + +T  SL+ M+ER C  G+    
Sbjct: 464 EARHLFYKM--EIGKNP-------SLFLRLSQGADRVMDTA-SLQTMVERLCESGLILKA 513

Query: 280 FKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEM 339
           +KL  +                  +   G  PD   YN++I+ +C +     A KL  E+
Sbjct: 514 YKLLMQ------------------LADSGVVPDIMTYNVLINGFCKAKNINGAFKLFREL 555

Query: 340 VYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKN 377
              G  PD  TY  L +   +  +  +A  + ++MVKN
Sbjct: 556 QLKGHSPDSVTYGTLIDGFHRVDREEDAFRVLDQMVKN 593


>gi|18407744|ref|NP_564809.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169913|sp|Q9CAM8.1|PP100_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63150
 gi|12323259|gb|AAG51611.1|AC010795_15 unknown protein; 70626-72515 [Arabidopsis thaliana]
 gi|15810427|gb|AAL07101.1| unknown protein [Arabidopsis thaliana]
 gi|24030501|gb|AAN41397.1| unknown protein [Arabidopsis thaliana]
 gi|332195941|gb|AEE34062.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 629

 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 85/333 (25%), Positives = 147/333 (44%), Gaps = 5/333 (1%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           TF ++     + ++  +A+   D M Q GC+ D+    ++++ +C+ G    A   L  +
Sbjct: 190 TFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALNLLNKM 249

Query: 197 DG-RIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
           +  RIK +   +  +++   K R V  A   F EM  + G  P NV  Y+S LI  L   
Sbjct: 250 EAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETK-GIRP-NVVTYNS-LINCLCNY 306

Query: 256 DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHM 315
               +    L  M+E+  NP +  F    +       L  AE +   M+ R    PDT  
Sbjct: 307 GRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQR-SIDPDTIT 365

Query: 316 YNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
           YN++I+ +C  N    A ++   MV     P+IQTYN L     K +++ +   LF EM 
Sbjct: 366 YNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVEDGVELFREMS 425

Query: 376 KNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLP 435
           +   V N       ++ +  + D   A   +K M+ N       T ++L+ GLC    L 
Sbjct: 426 QRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQMVSNRVPTDIMTYSILLHGLCSYGKLD 485

Query: 436 EAVKYAKGMAEKGIQVTPFALSKLKQILIKARK 468
            A+   K + +  +++  F  + + + + KA K
Sbjct: 486 TALVIFKYLQKSEMELNIFIYNTMIEGMCKAGK 518



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 76/319 (23%), Positives = 136/319 (42%), Gaps = 13/319 (4%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           S+  F  + S+    ++ +  I+  + M+  G  HD++  +  ++  CR  +   A   L
Sbjct: 82  SIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAVL 141

Query: 194 -RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
            +++    +PD  T + LL G+   + +++A     +MV E+G+ PD          TL+
Sbjct: 142 AKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMV-EMGYKPDTFT-----FTTLI 195

Query: 253 KGC---DGIYETVNSLKRMMERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIG 308
            G    +   E V  + +M++RGC P + T+  +    C  G        +      RI 
Sbjct: 196 HGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALNLLNKMEAARI- 254

Query: 309 FRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEAS 368
            + +  ++N +I   C       A+ L  EM   G  P++ TYN L   L    +  +AS
Sbjct: 255 -KANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDAS 313

Query: 369 GLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGL 428
            L + M++ +   N     A +  +        A K  + MI+      + T NLL+ G 
Sbjct: 314 RLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGF 373

Query: 429 CDMHMLPEAVKYAKGMAEK 447
           C  + L EA +  K M  K
Sbjct: 374 CMHNRLDEAKQMFKFMVSK 392



 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 73/351 (20%), Positives = 132/351 (37%), Gaps = 48/351 (13%)

Query: 98  KHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAIT 156
           K +   +N ++D L K    +   D    M+ + +  ++ T+ S+ +      R  DA  
Sbjct: 255 KANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASR 314

Query: 157 TFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYAILLEGWE 215
               M +     +V   N+L+ A  ++GK ++A +    ++   I PD  TY +L+ G+ 
Sbjct: 315 LLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFC 374

Query: 216 KERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG---CDGIYETVNSLKRMMERG 272
               +  AK+ F  MV       D +P   +Y  TL+ G   C  + + V   + M +RG
Sbjct: 375 MHNRLDEAKQMFKFMV-----SKDCLPNIQTY-NTLINGFCKCKRVEDGVELFREMSQRG 428

Query: 273 CNPGMTFFKLAFEECLTGQNLRGAEFIWGAMV---------------------GRIG--- 308
                  +    +      +   A+ ++  MV                     G++    
Sbjct: 429 LVGNTVTYTTIIQGFFQAGDCDSAQMVFKQMVSNRVPTDIMTYSILLHGLCSYGKLDTAL 488

Query: 309 ----------FRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFL 358
                        +  +YN MI   C + + G A  L   +      PD+ TYN +   L
Sbjct: 489 VIFKYLQKSEMELNIFIYNTMIEGMCKAGKVGEAWDLFCSLSIK---PDVVTYNTMISGL 545

Query: 359 VKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYM 409
              R L EA  LF +M ++  + N       +R  +   D   + +  K M
Sbjct: 546 CSKRLLQEADDLFRKMKEDGTLPNSGTYNTLIRANLRDCDRAASAELIKEM 596



 Score = 38.9 bits (89), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 35/178 (19%), Positives = 70/178 (39%)

Query: 301 GAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVK 360
           G  +  +G   D + Y++ I+ +C  ++   A+ +L +M+  G  PDI T + L      
Sbjct: 106 GEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCH 165

Query: 361 GRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSET 420
            +++ +A  L ++MV+     +       +      +    A+     M++  C     T
Sbjct: 166 SKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVT 225

Query: 421 GNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKK 478
              +V GLC    +  A+     M    I+      + +   L K R   V  +L  +
Sbjct: 226 YGTVVNGLCKRGDIDLALNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTE 283


>gi|302754868|ref|XP_002960858.1| hypothetical protein SELMODRAFT_75631 [Selaginella moellendorffii]
 gi|300171797|gb|EFJ38397.1| hypothetical protein SELMODRAFT_75631 [Selaginella moellendorffii]
          Length = 699

 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 90/376 (23%), Positives = 165/376 (43%), Gaps = 20/376 (5%)

Query: 81  PGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAI----KSMKKENVLSLA 136
           P   + FF W+  ++   H+ ++ N  +D+L   C  +   +A+     +M +  + +  
Sbjct: 4   PELVLLFFDWARSRVG--HNVFSCNCALDML---CRLNRRQEALALFRNAMARICMPNKF 58

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           T+  +   +  A  +  AI   + M+  G + +     +L+  +C  G+ ++A +  R +
Sbjct: 59  TYGILIRGFSSAGDLDIAIQLLEEMKSSGFEGNAVVHTTLMKGLCDAGRVVEALEHFRAM 118

Query: 197 DGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD 256
                PD  TY  L+    K      A+    EMV + G  PD V    S LI  L    
Sbjct: 119 AKDCAPDVMTYTALVHALCKAGKFDEAQGMLREMVAQ-GCAPDTVTF--STLIDGLCKFG 175

Query: 257 GIYETVNSLKRMMERGC-NPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHM 315
              +    L+ +++RG  N    F  +    C    ++  A  + G ++ + GF P   M
Sbjct: 176 SEEQAFRVLEDVIQRGMGNSDAAFETIIQRLCNKYNSVELASKVLGVVIAK-GFTPTVLM 234

Query: 316 YNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
           +N++I+ +C + +  +A KLL+ M+  G  P++ T+ IL   L K  ++ EA  L  +MV
Sbjct: 235 FNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLLEKMV 294

Query: 376 K---NENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMH 432
               + NV+ +      +      DD Y   + ++ M   +C     T N+L+ GLC   
Sbjct: 295 MGGCSPNVVTYSTVINGLCKQGQVDDAY---ELFQLMERRNCPPNVVTHNILIDGLCKAK 351

Query: 433 MLPEAVKYAKGMAEKG 448
            + EA +    M E G
Sbjct: 352 RIEEARQLYHRMRETG 367



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 69/275 (25%), Positives = 133/275 (48%), Gaps = 9/275 (3%)

Query: 104 WNLVVDLLGKNCLFDAMWDAIKSM-KKENVLSLATFASVFSSYVVADRVKDAITTFDVME 162
           +NLV++   K    D+ +  ++ M +K  V ++ TF  + +    A+RV +A    + M 
Sbjct: 235 FNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLLEKMV 294

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDND-TYAILLEGWEKERDVA 221
             GC  +V   +++++ +C+ G+  DA++  ++++ R  P N  T+ IL++G  K + + 
Sbjct: 295 MGGCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILIDGLCKAKRIE 354

Query: 222 NAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPG--MTF 279
            A++ +  M  E G  PD +  Y+S +  L K    + E     + + E G +    +T+
Sbjct: 355 EARQLYHRMR-ETGCAPD-IITYNSLIDGLCKSFQ-VDEAFQLFQTIPESGVSAANAVTY 411

Query: 280 FKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEM 339
             L       G+ +  A  I+  +V + GF PD   Y  +I  YC ++     ++L++EM
Sbjct: 412 STLFHGYAALGR-MADACRIFSMLVDK-GFSPDLATYTSLILEYCKTSRAVEVVELVEEM 469

Query: 340 VYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
              G  P + T + +   L +G     A  LF+ M
Sbjct: 470 ASKGFPPRVNTLSAVLGGLFEGNHTERAIQLFDSM 504



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 76/318 (23%), Positives = 123/318 (38%), Gaps = 52/318 (16%)

Query: 168 HDVFALNSLLSAICRDGKTIDAWQFLRVVDGRI-KPDNDTYAILLEGWEKERDVANAKKT 226
           H+VF+ N  L  +CR  +  +A    R    RI  P+  TY IL+ G+    D+  A + 
Sbjct: 20  HNVFSCNCALDMLCRLNRRQEALALFRNAMARICMPNKFTYGILIRGFSSAGDLDIAIQL 79

Query: 227 FGEMVIEVGWDPDNVPAYDSYLITLLKG-CDGIYETVNSLKRMMERGCNPGMTFFKLAFE 285
             EM    G++ + V        TL+KG CD          R++E      +  F+   +
Sbjct: 80  LEEMK-SSGFEGNAV-----VHTTLMKGLCDA--------GRVVE-----ALEHFRAMAK 120

Query: 286 ECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAF 345
           +C                       PD   Y  ++   C + +   A  +L EMV  G  
Sbjct: 121 DC----------------------APDVMTYTALVHALCKAGKFDEAQGMLREMVAQGCA 158

Query: 346 PDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAV-----RVYMDSDDPY 400
           PD  T++ L + L K     +A  +  ++++        N  AA      R+    +   
Sbjct: 159 PDTVTFSTLIDGLCKFGSEEQAFRVLEDVIQR----GMGNSDAAFETIIQRLCNKYNSVE 214

Query: 401 VAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLK 460
           +A K    +I    +      NL++ G C    L  A K  + M EKG     F  + L 
Sbjct: 215 LASKVLGVVIAKGFTPTVLMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILI 274

Query: 461 QILIKARKEAVYEELLKK 478
             L KA +    ++LL+K
Sbjct: 275 TGLCKANRVGEAQQLLEK 292



 Score = 47.8 bits (112), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 64/314 (20%), Positives = 123/314 (39%), Gaps = 10/314 (3%)

Query: 104 WNLVVDLLGKNCLFDAMWDAIKSMKKENV--LSLATFASVFSSYVVADRVKDAITTFDVM 161
           +N ++D L K+   D  +   +++ +  V   +  T++++F  Y    R+ DA   F ++
Sbjct: 375 YNSLIDGLCKSFQVDEAFQLFQTIPESGVSAANAVTYSTLFHGYAALGRMADACRIFSML 434

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDV 220
              G   D+    SL+   C+  + ++  + +  +  +   P  +T + +L G  +    
Sbjct: 435 VDKGFSPDLATYTSLILEYCKTSRAVEVVELVEEMASKGFPPRVNTLSAVLGGLFEGNHT 494

Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC--DGIYETVNSLKRMMERGCNPGMT 278
             A + F  M        D+   Y+  +  + +    D     +  +    +R  NP  +
Sbjct: 495 ERAIQLFDSMAAR--GCTDDALIYNLVVEGMARASKHDKALAVLEQVIDKRDRKFNPSSS 552

Query: 279 FFKLAFEE-CLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLD 337
                 E  C  G+    A+ +   M  R GF      YN ++S          A ++ +
Sbjct: 553 AVDALVESLCQVGKT-DDAKQLLHKMSER-GFAAAVSSYNRLLSGLSRLQRWDEATQVFE 610

Query: 338 EMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSD 397
            MV  G  P+I T N++  +L    K+ +A  L   M K     + E C   +  Y  S 
Sbjct: 611 AMVSAGPAPEISTVNVVISWLCSAAKVDDAYELVQRMSKLGCCPDIETCNTLIGGYCKSG 670

Query: 398 DPYVAIKFWKYMIE 411
              +A K  + M E
Sbjct: 671 RADLARKLLEEMTE 684


>gi|302795346|ref|XP_002979436.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
 gi|300152684|gb|EFJ19325.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
          Length = 500

 Score =  101 bits (251), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 103/409 (25%), Positives = 166/409 (40%), Gaps = 42/409 (10%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVME 162
            + +++D L K    D     +  M+K+ V +  T+ S+ S    A+R  +A    + M 
Sbjct: 83  TYTVLIDGLCKGGRVDEAVALLSKMRKKCVPTAVTYNSLISGLCKAERASEAYDLLEEMV 142

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDVA 221
             GC  D+F   +L++  C+  K+ DA + F ++V    +PD  TY+ L++G  KE  + 
Sbjct: 143 YSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLK 202

Query: 222 NAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFK 281
            A   FG M+      P+ V  Y+S LI+       + E +N L+RM E G +P +  + 
Sbjct: 203 EAIDLFGRMIKSGSCMPNTV-TYNS-LISGFCRMGKMDEAMNLLERMAETGSSPDVVTYT 260

Query: 282 LAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVY 341
                      L  A  +   M  R G  PD   +  ++   C  N    A+ +L EM  
Sbjct: 261 TLMNGFCKLARLDDAYDLLNQMT-RKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRR 319

Query: 342 NGAFPDIQTYNILFEFLVKGRKLWEASGL-------------FNEMVKNENVLNHEN--- 385
               P + TYN + +   +  +L EA                FN M++    +N  +   
Sbjct: 320 KSCSPTVYTYNTILDGYCRANQLEEARKFMLEEMDCPPNVVSFNIMIRGLCKVNRSSEAM 379

Query: 386 ----------CRAAVRVYMDSDDPYV-------AIKFWKYMIEN-HCSDLSETGNLLVAG 427
                     C   V +Y    D          A + ++ M+E   C   S T + LV G
Sbjct: 380 ELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKMLEEPGCLPNSITYSTLVTG 439

Query: 428 LCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELL 476
           LC+  ML      A+G  EKG        + L     KA ++    ELL
Sbjct: 440 LCNAGMLDR----ARGYIEKGCVPNIGTYNLLIDAFRKANRDEDARELL 484



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 72/304 (23%), Positives = 124/304 (40%), Gaps = 3/304 (0%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           T+ +V  +  V +R+ +A    + M       +V     L+  +C+ G+  +A   L  +
Sbjct: 48  TYTAVIHALCVENRLHEARKFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKM 107

Query: 197 DGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD 256
             +  P   TY  L+ G  K    + A     EMV   G  PD +  Y + LIT      
Sbjct: 108 RKKCVPTAVTYNSLISGLCKAERASEAYDLLEEMVYS-GCIPD-IFTYTT-LITGFCKSK 164

Query: 257 GIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMY 316
              + +   ++++ RG  P +  +    +       L+ A  ++G M+      P+T  Y
Sbjct: 165 KSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTY 224

Query: 317 NMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK 376
           N +IS +C   +   AM LL+ M   G+ PD+ TY  L     K  +L +A  L N+M +
Sbjct: 225 NSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTR 284

Query: 377 NENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPE 436
                +     + +      +    A+     M    CS    T N ++ G C  + L E
Sbjct: 285 KGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEE 344

Query: 437 AVKY 440
           A K+
Sbjct: 345 ARKF 348



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 70/284 (24%), Positives = 110/284 (38%), Gaps = 40/284 (14%)

Query: 166 CKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERDVANAK 224
           C  D     SL+  +C+  +   A  FL ++V     PD  TY  ++     E  +  A+
Sbjct: 7   CSADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEAR 66

Query: 225 KTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAF 284
           K   EM       P NV  Y   +  L KG  G  +   +L   M + C P    +    
Sbjct: 67  KFLEEMA-NRNLTP-NVVTYTVLIDGLCKG--GRVDEAVALLSKMRKKCVPTAVTYNSLI 122

Query: 285 EECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGA 344
                 +    A  +   MV   G  PD   Y  +I+ +C S ++  A+++ +++V  G 
Sbjct: 123 SGLCKAERASEAYDLLEEMVYS-GCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGF 181

Query: 345 FPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIK 404
            PD+ TY+ L + L K  +L EA  LF  M+K+                           
Sbjct: 182 RPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKS--------------------------- 214

Query: 405 FWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448
                    C   + T N L++G C M  + EA+   + MAE G
Sbjct: 215 -------GSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETG 251



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 52/243 (21%), Positives = 109/243 (44%), Gaps = 10/243 (4%)

Query: 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR 194
           + T+ ++ + +    R+ DA    + M + G   DV    SL+  +CR+ +  DA   L 
Sbjct: 256 VVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILG 315

Query: 195 VVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLK 253
            +  +   P   TY  +L+G+ +   +  A+K     ++E    P NV +++  +  L K
Sbjct: 316 EMRRKSCSPTVYTYNTILDGYCRANQLEEARK----FMLEEMDCPPNVVSFNIMIRGLCK 371

Query: 254 GCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDT 313
             +   E +  ++    R CNP +  +    +     + +  A  ++  M+   G  P++
Sbjct: 372 -VNRSSEAMELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKMLEEPGCLPNS 430

Query: 314 HMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNE 373
             Y+ +++  C +     A   +++    G  P+I TYN+L +   K  +  +A  L ++
Sbjct: 431 ITYSTLVTGLCNAGMLDRARGYIEK----GCVPNIGTYNLLIDAFRKANRDEDARELLDD 486

Query: 374 MVK 376
           MV+
Sbjct: 487 MVQ 489



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 72/192 (37%), Gaps = 41/192 (21%)

Query: 291 QNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQT 350
           + L  A    G MV + GF PD + Y  +I   C  N    A K L+EM      P++ T
Sbjct: 25  KRLEQALIFLGKMVSK-GFHPDVYTYTAVIHALCVENRLHEARKFLEEMANRNLTPNVVT 83

Query: 351 YNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMI 410
           Y +L + L KG ++ EA  L ++M K                                  
Sbjct: 84  YTVLIDGLCKGGRVDEAVALLSKMRK---------------------------------- 109

Query: 411 ENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKE- 469
              C   + T N L++GLC      EA    + M   G     F  + L     K++K  
Sbjct: 110 --KCVPTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSD 167

Query: 470 ---AVYEELLKK 478
               V+E+L+ +
Sbjct: 168 DALRVFEQLVAR 179



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 59/242 (24%), Positives = 105/242 (43%), Gaps = 20/242 (8%)

Query: 117 FDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNS 175
            D  +D +  M ++ +   + TF S+       +R+ DA+     M +  C   V+  N+
Sbjct: 272 LDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNT 331

Query: 176 LLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVG 235
           +L   CR  +  +A +F+ + +    P+  ++ I++ G  K     N      E+V E  
Sbjct: 332 ILDGYCRANQLEEARKFM-LEEMDCPPNVVSFNIMIRGLCK----VNRSSEAMELVEEAR 386

Query: 236 ---WDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMER-GCNP-GMTFFKLAFEECLTG 290
               +PD V  Y + +  L +    + E     ++M+E  GC P  +T+  L    C  G
Sbjct: 387 RRRCNPD-VVMYTTVIDGLCRE-KKVDEACRVYRKMLEEPGCLPNSITYSTLVTGLCNAG 444

Query: 291 QNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQT 350
              R   +I    V  IG       YN++I  +  +N    A +LLD+MV  G F  +Q+
Sbjct: 445 MLDRARGYIEKGCVPNIG------TYNLLIDAFRKANRDEDARELLDDMVQRG-FGVVQS 497

Query: 351 YN 352
           + 
Sbjct: 498 HQ 499


>gi|297739643|emb|CBI29825.3| unnamed protein product [Vitis vinifera]
          Length = 722

 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 113/441 (25%), Positives = 183/441 (41%), Gaps = 68/441 (15%)

Query: 46  IANTPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAW- 104
           +  T +P +ED L+K    +S E V  V++     P    +FF W+      + S  +W 
Sbjct: 44  VMETVNP-MEDALEKLAPFLSSEIVNDVMR-EQRRPELGFRFFIWTT----RRRSFRSWV 97

Query: 105 --NLVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASVFSSYVVADRVKDAITTFDVM 161
             NLV+D+L K+  FD  W  ++ +K  N+ +   TF+ + ++Y  +   + A+ +F  M
Sbjct: 98  THNLVIDMLAKDDGFDTYWKILEELKNSNIQIPPPTFSVLIAAYAKSGMAEKAVESFGKM 157

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDV 220
           + +GCK DVF  NS+L  + +    + A   + +++     P+  T+ ILL G  K    
Sbjct: 158 KDFGCKPDVFTYNSILHVMVQKEVFLLALAVYNQMLKLNYNPNRATFVILLNGLCKNGKT 217

Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL--KGCDGIYETVNSLKRMMERGCNP-GM 277
            +A K F EM  + G  P N   Y   L  L   K  D ++  +N++K     GC P  +
Sbjct: 218 DDALKMFDEMT-QKGI-PPNTMIYTIILSGLCQAKRTDDVHRLLNTMK---VSGCCPDSI 272

Query: 278 TFFKLAFEECLTGQ------------------NLRGAEFI---------------WGAMV 304
           T   L    C  GQ                   ++G   +               W   +
Sbjct: 273 TCNALLDGFCKLGQIDEAFALLQLFEKEGYVLGIKGYSSLIDGLFRAKRYDEVQEWCRKM 332

Query: 305 GRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKL 364
            + G  PD  +Y ++I  +C       A+ +L++M   G  PD   YN L +       L
Sbjct: 333 FKAGIEPDVVLYTILIRGFCEVGMVDYALNMLNDMTQRGLSPDTYCYNALIKGFCDVGLL 392

Query: 365 WEASGLFNEMVKNE--------NVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSD 416
            +A  L  E+ KN+         +L    CR  +   +D      A + +  M    CS 
Sbjct: 393 DKARSLQLEISKNDCFPTSCTYTILICGMCRNGL---LDE-----ARQIFNQMENLGCSP 444

Query: 417 LSETGNLLVAGLCDMHMLPEA 437
              T N L+ GLC    L EA
Sbjct: 445 SIMTFNALIDGLCKAGELEEA 465



 Score = 41.6 bits (96), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 63/291 (21%), Positives = 112/291 (38%), Gaps = 42/291 (14%)

Query: 85  VKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFS 143
           ++ F    Y L  K     ++ ++D L +   +D + +  + M K  +   +  +  +  
Sbjct: 294 LQLFEKEGYVLGIK----GYSSLIDGLFRAKRYDEVQEWCRKMFKAGIEPDVVLYTILIR 349

Query: 144 SYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQF-LRVVDGRIKP 202
            +     V  A+   + M Q G   D +  N+L+   C  G    A    L +      P
Sbjct: 350 GFCEVGMVDYALNMLNDMTQRGLSPDTYCYNALIKGFCDVGLLDKARSLQLEISKNDCFP 409

Query: 203 DNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETV 262
            + TY IL+ G  +   +  A++ F +M   +G  P ++  +++ +  L K   G  E  
Sbjct: 410 TSCTYTILICGMCRNGLLDEARQIFNQME-NLGCSP-SIMTFNALIDGLCKA--GELEEA 465

Query: 263 NSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVG--RIGFRPDTHMYNMMI 320
             L   ME G NP + F +L+          +GA+ +     G  R+    D        
Sbjct: 466 RHLFYKMEIGKNPSL-FLRLS----------QGADRVMDTANGFHRVDREED-------- 506

Query: 321 SLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLF 371
                      A ++LD+MV NG  P    Y  L  +  +  KL  A  L+
Sbjct: 507 -----------AFRVLDQMVKNGCTPSSAVYKCLMTWSCRKGKLSVAFSLW 546


>gi|224136626|ref|XP_002322376.1| predicted protein [Populus trichocarpa]
 gi|222869372|gb|EEF06503.1| predicted protein [Populus trichocarpa]
          Length = 715

 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 88/332 (26%), Positives = 152/332 (45%), Gaps = 16/332 (4%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-F 192
           +L  F S+ +       +K A    + M + G K +V+   +L+  +C+ G T  A++ F
Sbjct: 300 NLINFTSLINGLCKRGSIKQAFEMLEEMVKKGWKPNVYTHTALIDGLCKKGWTEKAFRLF 359

Query: 193 LRVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITL 251
           L++V     KP+  TY  ++ G+ KE  +  A     EM++    +   VP   +Y   L
Sbjct: 360 LKLVRSDDYKPNVHTYTSMIHGYCKEDKLNRA-----EMLLSRMKEQGLVPNTKTY-TCL 413

Query: 252 LKGCD--GIYETVNSLKRMMERGCNPGMTFFKLAFEE--CLTGQNLRGAEFIWGAMVGRI 307
           + G    G +E    L  +M +       F   AF +  C  G+ L   + +      R+
Sbjct: 414 IDGHSKAGNFEKAYELMDLMGKEGFSANIFTYNAFIDSLCKKGRFLEACKLLKKGF--RL 471

Query: 308 GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEA 367
           G + DT  Y ++IS  C   +T  A+    +M   G  PD+ TYN L     + R++ E+
Sbjct: 472 GLQADTVTYTILISELCRRADTREALVFFSKMFKAGVQPDMHTYNTLIAAFSRQRRMEES 531

Query: 368 SGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAG 427
             LF E V    V   E   + +  Y    +  +A+KF+  M ++ C+  S T   L++G
Sbjct: 532 EKLFAEAVGLGLVPTKETYTSMICGYCRDRNVSLALKFFNRMSDHGCTPDSLTYGALISG 591

Query: 428 LCDMHMLPEAVKYAKGMAEKGIQVTPFALSKL 459
           LC    L EA +  + M +KG+  +P  +++L
Sbjct: 592 LCKESKLDEACQLYEAMVDKGL--SPCEVTRL 621


>gi|242033891|ref|XP_002464340.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
 gi|241918194|gb|EER91338.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
          Length = 758

 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 82/319 (25%), Positives = 148/319 (46%), Gaps = 13/319 (4%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-- 194
           TF ++   ++    ++ A+     M + GC      +N L++  C+ G+  DA  +++  
Sbjct: 234 TFTTLMQGFIEEGSIEAALRVKAKMMEAGCSPTGVTVNVLINGYCKMGRVEDALGYIQQE 293

Query: 195 VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG 254
           + DG  +PD  TY   + G  +   V++A K   +++++ G DPD V  Y++ +  L K 
Sbjct: 294 IADG-FEPDQVTYNTFVHGLCQNGHVSHALKVM-DLMLQEGHDPD-VFTYNTVINCLSKN 350

Query: 255 CDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTH 314
            + + E    + +M++RGC P  T F       L+ QN           +   G  PD +
Sbjct: 351 GE-LDEAKGIVNQMVDRGCLPDTTTFNTLIV-ALSSQNRLEEALDLARELTVKGLSPDVY 408

Query: 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
            +N++I+  C   +    ++L +EM  +G  PD  TYNIL + L    KL  A  L NEM
Sbjct: 409 TFNILINALCKVGDPHLGIRLFEEMKSSGCTPDEVTYNILIDHLCSMGKLGNALDLLNEM 468

Query: 375 VKN---ENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDM 431
             N    + + +     A+   M  ++   A + +  M     S  + T N L+ GLC  
Sbjct: 469 ESNGCPRSTVTYNTIIDALCKKMRIEE---AEEVFDQMDAQGISRSAVTFNTLIDGLCKA 525

Query: 432 HMLPEAVKYAKGMAEKGIQ 450
             + +A +  + M ++G+Q
Sbjct: 526 KRIDDATELIEQMVKEGLQ 544



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 108/458 (23%), Positives = 172/458 (37%), Gaps = 72/458 (15%)

Query: 79  SHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATF 138
           S P  A++    +  + +   S   +  +V  LG    FD M   ++ M++E     A  
Sbjct: 67  SDPEAALRMLNSALAREDFAPSSAVYEEIVQKLGTAGAFDLMEGLVREMRREGHQVRAVV 126

Query: 139 ASVF-SSYVVADRVKDAITTFDVMEQ-----YGCKHDVFALNSLLSAICRDGKTIDAWQF 192
              F  SY    R  DA+    V+ Q     +G + D    N LL+ +    K       
Sbjct: 127 VRSFVESYARLRRFDDAVDL--VLNQLDNDTFGVQADTVVFNHLLNVLVEGSKLKLLESV 184

Query: 193 LRVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITL 251
              + GR I+PD  T   L++   +   V  A     EM    G  PD     ++   TL
Sbjct: 185 YNEMTGRGIQPDVVTLNTLIKALCRAHQVRTAVLMLEEMSSH-GVAPD-----ETTFTTL 238

Query: 252 LKGC--DGIYETVNSLK-RMMERGCNP-GMTFFKLAFEECLTGQNLRGAEFIWGAMVGRI 307
           ++G   +G  E    +K +MME GC+P G+T   L    C  G+      +I   +    
Sbjct: 239 MQGFIEEGSIEAALRVKAKMMEAGCSPTGVTVNVLINGYCKMGRVEDALGYIQQEIAD-- 296

Query: 308 GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEA 367
           GF PD   YN  +   C +     A+K++D M+  G  PD+ TYN +   L K  +L EA
Sbjct: 297 GFEPDQVTYNTFVHGLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEA 356

Query: 368 SGLFNEMVKNE-------------------------------------------NVLNHE 384
            G+ N+MV                                              N+L + 
Sbjct: 357 KGIVNQMVDRGCLPDTTTFNTLIVALSSQNRLEEALDLARELTVKGLSPDVYTFNILINA 416

Query: 385 NCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGM 444
            C+          DP++ I+ ++ M  + C+    T N+L+  LC M  L  A+     M
Sbjct: 417 LCKVG--------DPHLGIRLFEEMKSSGCTPDEVTYNILIDHLCSMGKLGNALDLLNEM 468

Query: 445 AEKGIQVTPFALSKLKQILIKARKEAVYEELLKKCKAH 482
              G   +    + +   L K  +    EE+  +  A 
Sbjct: 469 ESNGCPRSTVTYNTIIDALCKKMRIEEAEEVFDQMDAQ 506



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 77/321 (23%), Positives = 126/321 (39%), Gaps = 43/321 (13%)

Query: 95  LNDKHSP--YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRV 151
           L + H P  + +N V++ L KN   D     +  M     L    TF ++  +    +R+
Sbjct: 329 LQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALSSQNRL 388

Query: 152 KDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKT-IDAWQFLRVVDGRIKPDNDTYAIL 210
           ++A+     +   G   DV+  N L++A+C+ G   +    F  +      PD  TY IL
Sbjct: 389 EEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCTPDEVTYNIL 448

Query: 211 LEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLK--------------GCD 256
           ++       + NA     EM  E    P +   Y++ +  L K                 
Sbjct: 449 IDHLCSMGKLGNALDLLNEM--ESNGCPRSTVTYNTIIDALCKKMRIEEAEEVFDQMDAQ 506

Query: 257 GIYE---TVNSL-----------------KRMMERGCNPG-MTFFKLAFEECLTGQNLRG 295
           GI     T N+L                 ++M++ G  P  +T+  +    C  G N++ 
Sbjct: 507 GISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPNNITYNSILTHYCKQG-NIKK 565

Query: 296 AEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILF 355
           A  I   M    GF  D   Y  +I+  C +  T  A+KLL  M   G  P  + YN + 
Sbjct: 566 AADILETMTAN-GFEIDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGIRPTPKAYNPVI 624

Query: 356 EFLVKGRKLWEASGLFNEMVK 376
           + L +   L +A  LF EM +
Sbjct: 625 QSLFRRNNLRDALNLFREMTE 645



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 60/229 (26%), Positives = 101/229 (44%), Gaps = 8/229 (3%)

Query: 150 RVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYA 208
           ++ +A+   + ME  GC       N+++ A+C+  +  +A +    +D + I     T+ 
Sbjct: 457 KLGNALDLLNEMESNGCPRSTVTYNTIIDALCKKMRIEEAEEVFDQMDAQGISRSAVTFN 516

Query: 209 ILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRM 268
            L++G  K + + +A +   +MV E G  P+N+  Y+S L    K  + I +  + L+ M
Sbjct: 517 TLIDGLCKAKRIDDATELIEQMVKE-GLQPNNI-TYNSILTHYCKQGN-IKKAADILETM 573

Query: 269 MERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSN 327
              G    + T+  L    C  G+     + + G  +   G RP    YN +I      N
Sbjct: 574 TANGFEIDVVTYGTLINGLCKAGRTQVALKLLRGMRIK--GIRPTPKAYNPVIQSLFRRN 631

Query: 328 ETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRK-LWEASGLFNEMV 375
               A+ L  EM   G  PD  TY I+F  L +G   + EA     EMV
Sbjct: 632 NLRDALNLFREMTEVGEPPDALTYKIVFRSLCRGGGPIKEAFDFLVEMV 680


>gi|356497975|ref|XP_003517831.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g26500-like [Glycine max]
          Length = 494

 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 108/471 (22%), Positives = 203/471 (43%), Gaps = 54/471 (11%)

Query: 29  HLDVPNLPPTIKTLCEII---ANTPSPTVEDVLDKTLIRVSQETVEQVL-KFSYSHPGPA 84
           H   P  P  +  +C I+    N+P P +   L  +  +++ E   QV  KF YS   P 
Sbjct: 26  HHISPVNPDHLLRVCTILYQQQNSPEPRLTSKLASSEFQLTHEFFLQVCNKFPYSWR-PV 84

Query: 85  VKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSS 144
            +FF ++    +  HSP ++N ++D++GK+   D  WD +  M + + ++  TF     +
Sbjct: 85  YRFFLYTQSLPHFTHSPVSFNKMLDVVGKSRNIDLFWDLLNDMARRHFVNDKTFVIALRT 144

Query: 145 YVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR--IKP 202
              A  +K  +  F +M   GC++++  LN ++ A+C+  + +D  +F+ V   R  ++P
Sbjct: 145 LGGARELKKCVEFFHLMNSNGCEYNLGTLNKVVEAMCKS-RLVDEAKFV-VFKLRECVRP 202

Query: 203 DNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD-----G 257
           D  TY  L+ G+  + D+  A K +  M  E G++ D V A +  + T  K  +      
Sbjct: 203 DGVTYKNLIIGYCDKGDLVGASKVWNLMEDE-GFEAD-VDAVEKMMETFFKVNEYGEALR 260

Query: 258 IYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYN 317
           ++ET+   KRM E G +   T+  +    C  G   R  E ++  M  R G R +     
Sbjct: 261 LFETMR-FKRMNELGAS---TYGLVIRWLCKKGMMARAHE-VFEEMRER-GVRVNDSTLG 314

Query: 318 MMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKN 377
            ++           A ++ + +      PD+  Y+   + L+K R+  EA+ +F EM++ 
Sbjct: 315 DVVYGLLTRRRVREAYRVFEGI----EVPDLCVYHGFIKGLLKLRRAGEATQVFREMIR- 369

Query: 378 ENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETG--------NLLVAGLC 429
                   C   +  Y+              +++ H       G         + V G+ 
Sbjct: 370 ------RGCEPTMHTYI-------------MLLQGHLGRRGRKGTDPLVNFDTIFVGGMV 410

Query: 430 DMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKCK 480
                 EA KY + +  +G++V  F  +K            ++E++ KK +
Sbjct: 411 KAGKSKEATKYVERVLNRGMEVPRFDYNKFLHYFSNEEGVHMFEDVGKKLR 461


>gi|449445529|ref|XP_004140525.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g01570-like [Cucumis sativus]
 gi|449523383|ref|XP_004168703.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g01570-like [Cucumis sativus]
          Length = 803

 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 109/460 (23%), Positives = 194/460 (42%), Gaps = 45/460 (9%)

Query: 46  IANTPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWN 105
           I  T S +    L    + +S   + Q+L     +P   + FF+W +   N  HSP  ++
Sbjct: 35  ITKTLSESGTRTLQHHSLPISHPLLLQILHSRSLNPSHKLDFFKWCSLAPNFNHSPSTYS 94

Query: 106 LVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASVFSSYVVADRVKDAITTFDVMEQY 164
            +  +L ++     +   + SMK++ V +   TF  +  +++ + +   A+   D ME  
Sbjct: 95  QIFHILCRSGYLHEVPPLLDSMKRDGVSVDSHTFKVLLDAFIRSGKYDAALEILDHMEDL 154

Query: 165 GCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDG-----RIKPDNDTYAILLEGWEKER 218
           G   ++   NS+L A+ R  +   A   F +++DG     ++     T+  L        
Sbjct: 155 GTSLELNTYNSVLVALLRKNQVGLALSIFFKLLDGFNNGGQVDSAATTFHFLPNSLACNE 214

Query: 219 DVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLK--------GCDGIYETVNSL----- 265
            +   +K   +M +E     D + A +S+  ++          GC G  +T  SL     
Sbjct: 215 LLVALRKL--DMRVEFKKVFDKLRAIESFEFSVYGYNICIYAFGCWGYLDTALSLFKEMK 272

Query: 266 -KRMMERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLY 323
            K ++    +P + T+  +    CL G+ ++ A  +W  + G  G  PD   Y ++I   
Sbjct: 273 EKSLVSESFSPDLCTYNSIIHVLCLVGK-VKDALIVWEELKGS-GHEPDAFTYRIIIQGC 330

Query: 324 CYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNH 383
           C S     A  + +EM YNG  PD   YN L   L K RK+ EA  LF++MV+       
Sbjct: 331 CKSCRMDDATMIFNEMEYNGLIPDTIVYNSLLNGLFKARKVTEACQLFDKMVQ------- 383

Query: 384 ENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETG--------NLLVAGLCDMHMLP 435
           E+ RA+   Y    D        +      C DL + G        ++++  LC   +L 
Sbjct: 384 EDVRASPWTYNILIDGLFRNGRAEAGYTLFC-DLKKKGQIVDAVTYSIIILQLCKERLLE 442

Query: 436 EAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEEL 475
           EA++  + M  +G  V    ++ L   LI   K+  ++ L
Sbjct: 443 EALQLVEEMEARGFVVDLITITSL---LIAMHKQGQWDGL 479



 Score = 38.9 bits (89), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 30/119 (25%), Positives = 56/119 (47%), Gaps = 3/119 (2%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAI-KSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVM 161
            +N+++  LGK    D     + K M++   L +  + ++ ++   A R+ D    F  M
Sbjct: 670 TYNVIIQGLGKMGRADLASSVLEKLMEQGGYLDIVMYNTLINALGKAGRMDDVNKLFGQM 729

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYAIL-LEGWEKER 218
              G   DV   N+L+    + G+  DA++FL+ ++D    P++ T   L   G E E+
Sbjct: 730 RNSGINPDVVTFNTLIEVHSKAGRLKDAYKFLKMMLDSGCSPNHVTDTTLDFLGREMEK 788


>gi|259490380|ref|NP_001159198.1| uncharacterized protein LOC100304284 [Zea mays]
 gi|223942589|gb|ACN25378.1| unknown [Zea mays]
 gi|414865313|tpg|DAA43870.1| TPA: hypothetical protein ZEAMMB73_208601 [Zea mays]
          Length = 519

 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 102/439 (23%), Positives = 188/439 (42%), Gaps = 16/439 (3%)

Query: 47  ANTPSPTVEDVLDKTLIRVSQETVEQVLK-FSYSHPGPAVKFFRWSAY--QLNDKHSPYA 103
           A TPS  +E  L  + + +S   ++ V++ F ++H  P       S    +     SPYA
Sbjct: 53  AATPS-AMESALAASAVSLSSPLLDAVMRRFRFAHGDPLRALSLLSLAADRGGIAPSPYA 111

Query: 104 WNLVVDLLGKNCLFDAMWDAIKSMKK--ENVLSLATFASVFSSYVVADRVKDAITTFDVM 161
            +  + +LG+   F  MW+ + + ++   + L+  T   V         V++ + +F  +
Sbjct: 112 IDTALYVLGRARRFPHMWNLVANTRRICPDALTPRTAMIVLGRVAKVCSVRETVASFRCL 171

Query: 162 EQYGCKHDVFAL-NSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDV 220
            +     D   L N+LL  +C++    DA      +    + +  T+ ILL GW+   D 
Sbjct: 172 ARLFHTVDPAVLFNALLRTLCQEKSMSDARNVFHALKYEFRVNRHTFNILLSGWKSAEDA 231

Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGM-TF 279
               + F   + E+G +PD V  Y+S +    K  D + +    L  M  +  +P + T+
Sbjct: 232 ----EAFVTEMRELGVEPDLV-TYNSLIDCHCKNRD-VQKAYKLLDEMRHKDISPDIITY 285

Query: 280 FKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEM 339
             L     L GQ  +  + +    +  +G  PD   YN  I  +  +   G A  L+D+M
Sbjct: 286 TSLIGGLGLIGQPDKAKDLL--KEMYELGCYPDVPAYNAAIRNFVIAKRLGDAFALMDQM 343

Query: 340 VYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDP 399
           V  G  P+  TYN+ F        +  A  L+  M       N ++C   +R+       
Sbjct: 344 VSKGLMPNPTTYNLFFRCYYWAFDIGSAWRLYERMRSEGCYPNTQSCMFIIRLCHRYGKV 403

Query: 400 YVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKL 459
            +A++ W  M+ +    L+   ++L+  LCD   L +A +    M E G + +  A  ++
Sbjct: 404 ALALELWSDMVSSSFGSLTLVSDVLLDLLCDEGKLEDAERCFCQMVELGQKPSNVAFRRI 463

Query: 460 KQILIKARKEAVYEELLKK 478
           K ++  A++E     L +K
Sbjct: 464 KILMQLAKQEESIARLTEK 482


>gi|9502386|gb|AAF88093.1|AC025417_21 T12C24.22 [Arabidopsis thaliana]
          Length = 1245

 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 88/346 (25%), Positives = 154/346 (44%), Gaps = 12/346 (3%)

Query: 99  HSPYAWNLVVDLLGKNCLFDAMWDAI-KSMKKENVLSLATFASVFSSYVVADRVKDAITT 157
           H+ Y  N++++   + C     +  + K MK        TF ++     +  +V +A+  
Sbjct: 111 HNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVL 170

Query: 158 FDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEK 216
            D M + GC+ DV   NS+++ ICR G T  A   LR ++ R +K D  TY+ +++   +
Sbjct: 171 VDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCR 230

Query: 217 ERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC---DGIYETVNSLKRMMERGC 273
           +  +  A   F EM  E      +V  Y+S +  L K     DG       LK M+ R  
Sbjct: 231 DGCIDAAISLFKEM--ETKGIKSSVVTYNSLVRGLCKAGKWNDGAL----LLKDMVSREI 284

Query: 274 NPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAM 333
            P +  F +  +  +    L+ A  ++  M+ R G  P+   YN ++  YC  N    A 
Sbjct: 285 VPNVITFNVLLDVFVKEGKLQEANELYKEMITR-GISPNIITYNTLMDGYCMQNRLSEAN 343

Query: 334 KLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVY 393
            +LD MV N   PDI T+  L +     +++ +   +F  + K   V N       V+ +
Sbjct: 344 NMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGF 403

Query: 394 MDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVK 439
             S    +A + ++ M+ +       T  +L+ GLCD   L +A++
Sbjct: 404 CQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALE 449



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 76/282 (26%), Positives = 138/282 (48%), Gaps = 14/282 (4%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVLS-LATFASVFSSYVVADRVKDAITTFDVM 161
            +N +V+ + ++       D ++ M++ NV + + T++++  S      +  AI+ F  M
Sbjct: 185 TYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEM 244

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYAILLEGWEKERDV 220
           E  G K  V   NSL+  +C+ GK  D    L+ +V   I P+  T+ +LL+ + KE  +
Sbjct: 245 ETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKL 304

Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG-C--DGIYETVNSLKRMMERGCNPGM 277
             A + + EM+   G  P N+  Y+    TL+ G C  + + E  N L  M+   C+P +
Sbjct: 305 QEANELYKEMITR-GISP-NIITYN----TLMDGYCMQNRLSEANNMLDLMVRNKCSPDI 358

Query: 278 -TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLL 336
            TF  L    C+  +   G +      + + G   +   Y++++  +C S +   A +L 
Sbjct: 359 VTFTSLIKGYCMVKRVDDGMKVFRN--ISKRGLVANAVTYSILVQGFCQSGKIKLAEELF 416

Query: 337 DEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNE 378
            EMV +G  PD+ TY IL + L    KL +A  +F ++ K++
Sbjct: 417 QEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSK 458



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 88/385 (22%), Positives = 162/385 (42%), Gaps = 18/385 (4%)

Query: 112 GKNCLFDAMWDAIKSMKKENVL-------------SLATFASVFSSYVVADRVKDAITTF 158
           G  C  + +   I  +KK++ +             SL  F+  FS+     +    +   
Sbjct: 42  GNVCFRERLRSGIVDIKKDDAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFC 101

Query: 159 DVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKE 217
             +E  G  H+++ LN +++  CR  KT  A+  L +V+    +PD  T+  L++G   E
Sbjct: 102 KQLELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLE 161

Query: 218 RDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGM 277
             V+ A      MV E G  PD V  Y+S +  + +  D     ++ L++M ER     +
Sbjct: 162 GKVSEAVVLVDRMV-ENGCQPD-VVTYNSIVNGICRSGDTSL-ALDLLRKMEERNVKADV 218

Query: 278 TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLD 337
             +    +       +  A  ++  M  + G +     YN ++   C + +      LL 
Sbjct: 219 FTYSTIIDSLCRDGCIDAAISLFKEMETK-GIKSSVVTYNSLVRGLCKAGKWNDGALLLK 277

Query: 338 EMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSD 397
           +MV     P++ T+N+L +  VK  KL EA+ L+ EM+      N       +  Y   +
Sbjct: 278 DMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQN 337

Query: 398 DPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALS 457
               A      M+ N CS    T   L+ G C +  + + +K  + ++++G+       S
Sbjct: 338 RLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYS 397

Query: 458 KLKQILIKARKEAVYEELLKKCKAH 482
            L Q   ++ K  + EEL ++  +H
Sbjct: 398 ILVQGFCQSGKIKLAEELFQEMVSH 422



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 62/276 (22%), Positives = 122/276 (44%), Gaps = 10/276 (3%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVM 161
            +N+++D+  K        +  K M    +  ++ T+ ++   Y + +R+ +A    D+M
Sbjct: 290 TFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLM 349

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDV 220
            +  C  D+    SL+   C   +  D  +  R +  R +  +  TY+IL++G+ +   +
Sbjct: 350 VRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKI 409

Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDG--IYETVNSLKRMMERGCNPGMT 278
             A++ F EMV   G  PD +    +Y I L   CD   + + +   + + +   + G+ 
Sbjct: 410 KLAEELFQEMVSH-GVLPDVM----TYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIV 464

Query: 279 FFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDE 338
            +    E    G  +  A  ++ ++  + G +P+   Y +MIS  C       A  LL +
Sbjct: 465 MYTTIIEGMCKGGKVEDAWNLFCSLPCK-GVKPNVMTYTVMISGLCKKGSLSEANILLRK 523

Query: 339 MVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
           M  +G  P+  TYN L    ++   L  ++ L  EM
Sbjct: 524 MEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEM 559



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 50/233 (21%), Positives = 96/233 (41%), Gaps = 11/233 (4%)

Query: 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FL 193
           + TF S+   Y +  RV D +  F  + + G   +    + L+   C+ GK   A + F 
Sbjct: 358 IVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQ 417

Query: 194 RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMV---IEVGWDPDNVPAYDSYLIT 250
            +V   + PD  TY ILL+G      +  A + F ++    +++G     +  Y + +  
Sbjct: 418 EMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLG-----IVMYTTIIEG 472

Query: 251 LLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFR 310
           + KG   + +  N    +  +G  P +  + +         +L  A  +   M    G  
Sbjct: 473 MCKG-GKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKM-EEDGNA 530

Query: 311 PDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRK 363
           P+   YN +I  +    +  A+ KL++EM   G   D  +  ++ + L+   K
Sbjct: 531 PNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVIDMLLSAMK 583


>gi|224130786|ref|XP_002328376.1| predicted protein [Populus trichocarpa]
 gi|222838091|gb|EEE76456.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 87/352 (24%), Positives = 149/352 (42%), Gaps = 5/352 (1%)

Query: 118 DAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLL 177
           DA+    + ++     S+  F     S     +    ++  + M+ +G  H+V++LN L+
Sbjct: 75  DALASFYRMLRMNPRPSVVEFGRFLGSIAKKKQYSTVVSLCNQMDLFGVTHNVYSLNILI 134

Query: 178 SAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGW 236
           + +CR    + A   L ++    I+PD  T+  L+ G   E ++  A   F EMV   G 
Sbjct: 135 NCLCRLNHVVFAISVLGKMFKLGIQPDAITFNTLINGRCIEGEIKEAVGLFNEMV-RRGH 193

Query: 237 DPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGA 296
            PD V +Y + +  L K  +     +  L++M E+GC P +  +    +       +  A
Sbjct: 194 QPD-VISYSTVINGLCKSGN-TSMALQLLRKMEEKGCKPNLVAYTTIIDSLCKDTLVNDA 251

Query: 297 EFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFE 356
             +   MV R G  PD   Y+ ++  +C       A  L +EMV     P+  T+ IL +
Sbjct: 252 MDLLSEMVDR-GIPPDVVTYSTILHGFCSLGHLNEATILFNEMVGRNVMPNTVTFTILVD 310

Query: 357 FLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSD 416
            L K   + EA  +F  M K     N     A +  Y  ++    A K    M++  C+ 
Sbjct: 311 GLCKEGMVSEARCVFEAMTKKGAEPNAYTYNALMDGYCLNNQMDEAQKVLDIMVDKGCAP 370

Query: 417 LSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARK 468
           +  + N+L+ G C    L EA      M+EK +       S L Q L +  +
Sbjct: 371 VVHSYNILINGYCKRRRLDEAKSLLVEMSEKELTPDTVTYSTLMQGLCQVGR 422



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 103/420 (24%), Positives = 169/420 (40%), Gaps = 82/420 (19%)

Query: 99  HSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLA----TFASVFSSYVVADRVKDA 154
           H+ Y+ N++++ L   C  + +  AI  + K   L +     TF ++ +   +   +K+A
Sbjct: 125 HNVYSLNILINCL---CRLNHVVFAISVLGKMFKLGIQPDAITFNTLINGRCIEGEIKEA 181

Query: 155 ITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEG 213
           +  F+ M + G + DV + +++++ +C+ G T  A Q LR ++ +  KP+   Y  +++ 
Sbjct: 182 VGLFNEMVRRGHQPDVISYSTVINGLCKSGNTSMALQLLRKMEEKGCKPNLVAYTTIIDS 241

Query: 214 WEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYL------------------------- 248
             K+  V +A     EMV + G  PD V  Y + L                         
Sbjct: 242 LCKDTLVNDAMDLLSEMV-DRGIPPD-VVTYSTILHGFCSLGHLNEATILFNEMVGRNVM 299

Query: 249 ---ITLLKGCDG------IYETVNSLKRMMERGCNP-GMTFFKLAFEECLTGQNLRGAEF 298
              +T     DG      + E     + M ++G  P   T+  L    CL  Q +  A+ 
Sbjct: 300 PNTVTFTILVDGLCKEGMVSEARCVFEAMTKKGAEPNAYTYNALMDGYCLNNQ-MDEAQK 358

Query: 299 IWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFL 358
           +   MV + G  P  H YN++I+ YC       A  LL EM      PD  TY+ L + L
Sbjct: 359 VLDIMVDK-GCAPVVHSYNILINGYCKRRRLDEAKSLLVEMSEKELTPDTVTYSTLMQGL 417

Query: 359 VKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLS 418
            +  +  EA  LF EM           C + +                         DL 
Sbjct: 418 CQVGRPQEALNLFKEM-----------CSSGL-----------------------LPDLM 443

Query: 419 ETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKK 478
            T + L+ GLC    L EA+K  K M E  I+      + L + +  A K  V +EL  K
Sbjct: 444 -TYSTLLDGLCKHGHLDEALKLLKSMQESKIEPDIVLYNILIEGMFIAGKLEVAKELFSK 502



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 77/305 (25%), Positives = 131/305 (42%), Gaps = 14/305 (4%)

Query: 127 MKKENVL-SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGK 185
           M   NV+ +  TF  +         V +A   F+ M + G + + +  N+L+   C + +
Sbjct: 293 MVGRNVMPNTVTFTILVDGLCKEGMVSEARCVFEAMTKKGAEPNAYTYNALMDGYCLNNQ 352

Query: 186 TIDAWQFLRV-VDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAY 244
             +A + L + VD    P   +Y IL+ G+ K R +  AK    EM  E    PD V  Y
Sbjct: 353 MDEAQKVLDIMVDKGCAPVVHSYNILINGYCKRRRLDEAKSLLVEMS-EKELTPDTV-TY 410

Query: 245 DSYLITLLKGCDGI---YETVNSLKRMMERGCNPG-MTFFKLAFEECLTGQNLRGAEFIW 300
                TL++G   +    E +N  K M   G  P  MT+  L    C  G      + + 
Sbjct: 411 S----TLMQGLCQVGRPQEALNLFKEMCSSGLLPDLMTYSTLLDGLCKHGHLDEALKLLK 466

Query: 301 GAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVK 360
                +I   PD  +YN++I     + +   A +L  ++  +G  P I+TY I+ + L+K
Sbjct: 467 SMQESKI--EPDIVLYNILIEGMFIAGKLEVAKELFSKLFADGIQPTIRTYTIMIKGLLK 524

Query: 361 GRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSET 420
                EA  LF +M  +  + N  +    ++ ++ + D   AI+    M+    S  S T
Sbjct: 525 EGLSDEAYELFRKMEDDGFLPNSCSYNVIIQGFLQNQDSSTAIRLIDEMVGKRFSADSST 584

Query: 421 GNLLV 425
             +L+
Sbjct: 585 FQMLL 589



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 61/278 (21%), Positives = 112/278 (40%), Gaps = 44/278 (15%)

Query: 115 CLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALN 174
           C+F+AM       KK    +  T+ ++   Y + +++ +A    D+M   GC   V + N
Sbjct: 323 CVFEAMT------KKGAEPNAYTYNALMDGYCLNNQMDEAQKVLDIMVDKGCAPVVHSYN 376

Query: 175 SLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIE 233
            L++  C+  +  +A   L  + +  + PD  TY+ L++G  +      A   F EM   
Sbjct: 377 ILINGYCKRRRLDEAKSLLVEMSEKELTPDTVTYSTLMQGLCQVGRPQEALNLFKEMC-S 435

Query: 234 VGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNL 293
            G  PD +  Y + L  L K    + E +  LK M E    P +  + +  E       L
Sbjct: 436 SGLLPD-LMTYSTLLDGLCKH-GHLDEALKLLKSMQESKIEPDIVLYNILIEGMFIAGKL 493

Query: 294 RGAEFIWGAMV----------------GRI------------------GFRPDTHMYNMM 319
             A+ ++  +                 G +                  GF P++  YN++
Sbjct: 494 EVAKELFSKLFADGIQPTIRTYTIMIKGLLKEGLSDEAYELFRKMEDDGFLPNSCSYNVI 553

Query: 320 ISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEF 357
           I  +  + ++  A++L+DEMV      D  T+ +L + 
Sbjct: 554 IQGFLQNQDSSTAIRLIDEMVGKRFSADSSTFQMLLDL 591


>gi|302792252|ref|XP_002977892.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
 gi|300154595|gb|EFJ21230.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
          Length = 500

 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 102/409 (24%), Positives = 166/409 (40%), Gaps = 42/409 (10%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVME 162
            + +++D L K    D     +  M+K+ V +  T+ S+ S    A+R  +A    + M 
Sbjct: 83  TYTVLIDGLCKGGRVDEAVALLSKMRKKCVPTAVTYNSLISGLCKAERASEAYDLLEEMV 142

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDVA 221
             GC  D+F   +L++  C+  K+ DA + F ++V    +PD  TY+ L++G  KE  + 
Sbjct: 143 YSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLK 202

Query: 222 NAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFK 281
            A   FG M+      P+ V  Y+S LI+       + E +N L+RM E G +P +  + 
Sbjct: 203 EAIDLFGRMIKSGSCMPNTV-TYNS-LISGFCRMGKMDEAMNLLERMAETGSSPDVVTYT 260

Query: 282 LAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVY 341
                      L  A  +   M  R G  PD   +  ++   C  N    A+ +L EM  
Sbjct: 261 TLMNGFCKLARLDDAYDLLNQMT-RKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRR 319

Query: 342 NGAFPDIQTYNILFEFLVKGRKLWEASGL-------------FNEMVKNENVLNHEN--- 385
               P + TYN + +   +  +L EA                FN M++    +N  +   
Sbjct: 320 KSCSPTVYTYNTILDGYCRANQLEEARKFMLEEMDCPPNVVSFNIMIRGLCKVNRSSEAM 379

Query: 386 ----------CRAAVRVYMDSDDPYV-------AIKFWKYMIEN-HCSDLSETGNLLVAG 427
                     C   V +Y    D          A + ++ M+E   C   S T + L+ G
Sbjct: 380 ELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKMLEEPGCLPNSITYSTLITG 439

Query: 428 LCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELL 476
           LC+  ML      A+G  EKG        + L     KA ++    ELL
Sbjct: 440 LCNAGMLDR----ARGYIEKGCVPNIGTYNLLIDAFRKANRDEDARELL 484



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 72/304 (23%), Positives = 124/304 (40%), Gaps = 3/304 (0%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           T+ +V  +  V +R+ +A    + M       +V     L+  +C+ G+  +A   L  +
Sbjct: 48  TYTAVIHALCVENRLHEARKFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKM 107

Query: 197 DGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD 256
             +  P   TY  L+ G  K    + A     EMV   G  PD +  Y + LIT      
Sbjct: 108 RKKCVPTAVTYNSLISGLCKAERASEAYDLLEEMVYS-GCIPD-IFTYTT-LITGFCKSK 164

Query: 257 GIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMY 316
              + +   ++++ RG  P +  +    +       L+ A  ++G M+      P+T  Y
Sbjct: 165 KSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTY 224

Query: 317 NMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK 376
           N +IS +C   +   AM LL+ M   G+ PD+ TY  L     K  +L +A  L N+M +
Sbjct: 225 NSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTR 284

Query: 377 NENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPE 436
                +     + +      +    A+     M    CS    T N ++ G C  + L E
Sbjct: 285 KGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEE 344

Query: 437 AVKY 440
           A K+
Sbjct: 345 ARKF 348



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 70/284 (24%), Positives = 110/284 (38%), Gaps = 40/284 (14%)

Query: 166 CKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERDVANAK 224
           C  D     SL+  +C+  +   A  FL ++V     PD  TY  ++     E  +  A+
Sbjct: 7   CSADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEAR 66

Query: 225 KTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAF 284
           K   EM       P NV  Y   +  L KG  G  +   +L   M + C P    +    
Sbjct: 67  KFLEEMA-NRNLTP-NVVTYTVLIDGLCKG--GRVDEAVALLSKMRKKCVPTAVTYNSLI 122

Query: 285 EECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGA 344
                 +    A  +   MV   G  PD   Y  +I+ +C S ++  A+++ +++V  G 
Sbjct: 123 SGLCKAERASEAYDLLEEMVYS-GCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGF 181

Query: 345 FPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIK 404
            PD+ TY+ L + L K  +L EA  LF  M+K+                           
Sbjct: 182 RPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKS--------------------------- 214

Query: 405 FWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448
                    C   + T N L++G C M  + EA+   + MAE G
Sbjct: 215 -------GSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETG 251



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 53/243 (21%), Positives = 109/243 (44%), Gaps = 10/243 (4%)

Query: 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR 194
           + T+ ++ + +    R+ DA    + M + G   DV    SL+  +CR+ +  DA   L 
Sbjct: 256 VVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILG 315

Query: 195 VVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLK 253
            +  +   P   TY  +L+G+ +   +  A+K     ++E    P NV +++  +  L K
Sbjct: 316 EMRRKSCSPTVYTYNTILDGYCRANQLEEARK----FMLEEMDCPPNVVSFNIMIRGLCK 371

Query: 254 GCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDT 313
             +   E +  ++    R CNP +  +    +     + +  A  ++  M+   G  P++
Sbjct: 372 -VNRSSEAMELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKMLEEPGCLPNS 430

Query: 314 HMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNE 373
             Y+ +I+  C +     A   +++    G  P+I TYN+L +   K  +  +A  L ++
Sbjct: 431 ITYSTLITGLCNAGMLDRARGYIEK----GCVPNIGTYNLLIDAFRKANRDEDARELLDD 486

Query: 374 MVK 376
           MV+
Sbjct: 487 MVQ 489



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 72/192 (37%), Gaps = 41/192 (21%)

Query: 291 QNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQT 350
           + L  A    G MV + GF PD + Y  +I   C  N    A K L+EM      P++ T
Sbjct: 25  KRLEQALIFLGKMVSK-GFHPDVYTYTAVIHALCVENRLHEARKFLEEMANRNLTPNVVT 83

Query: 351 YNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMI 410
           Y +L + L KG ++ EA  L ++M K                                  
Sbjct: 84  YTVLIDGLCKGGRVDEAVALLSKMRK---------------------------------- 109

Query: 411 ENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKE- 469
              C   + T N L++GLC      EA    + M   G     F  + L     K++K  
Sbjct: 110 --KCVPTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSD 167

Query: 470 ---AVYEELLKK 478
               V+E+L+ +
Sbjct: 168 DALRVFEQLVAR 179



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 58/242 (23%), Positives = 105/242 (43%), Gaps = 20/242 (8%)

Query: 117 FDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNS 175
            D  +D +  M ++ +   + TF S+       +R+ DA+     M +  C   V+  N+
Sbjct: 272 LDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNT 331

Query: 176 LLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVG 235
           +L   CR  +  +A +F+ + +    P+  ++ I++ G  K     N      E+V E  
Sbjct: 332 ILDGYCRANQLEEARKFM-LEEMDCPPNVVSFNIMIRGLCK----VNRSSEAMELVEEAR 386

Query: 236 ---WDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMER-GCNP-GMTFFKLAFEECLTG 290
               +PD V  Y + +  L +    + E     ++M+E  GC P  +T+  L    C  G
Sbjct: 387 RRRCNPD-VVMYTTVIDGLCRE-KKVDEACRVYRKMLEEPGCLPNSITYSTLITGLCNAG 444

Query: 291 QNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQT 350
              R   +I    V      P+   YN++I  +  +N    A +LLD+MV  G F  +Q+
Sbjct: 445 MLDRARGYIEKGCV------PNIGTYNLLIDAFRKANRDEDARELLDDMVQRG-FGGVQS 497

Query: 351 YN 352
           + 
Sbjct: 498 HQ 499


>gi|224123314|ref|XP_002319048.1| predicted protein [Populus trichocarpa]
 gi|222857424|gb|EEE94971.1| predicted protein [Populus trichocarpa]
          Length = 497

 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 88/344 (25%), Positives = 154/344 (44%), Gaps = 9/344 (2%)

Query: 136 ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRV 195
            TF+++ +      ++ DA+  FD M + G + DV   +++++ +C+ G T  A Q L+ 
Sbjct: 48  VTFSTLLNGLSSKAKIIDAVKLFDEMVKMGYEPDVITYSTIINGLCKMGSTTMAIQLLKK 107

Query: 196 VDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG 254
           ++ +  KP+   Y+ +++   K++ +  A +   EMV   G  P NV  Y S L      
Sbjct: 108 MEEKGCKPNVVVYSTIIDSLCKDKLITEAMEFLSEMV-NRGISP-NVVTYSSILHGF--- 162

Query: 255 CD-GIYETVNSL-KRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD 312
           C+ G      SL K+M+ER   P    F +  +       +  A+ ++  M+ + G  P+
Sbjct: 163 CNLGRSNEATSLFKQMVERNVMPDTVTFNILVDGLSKEGMILEAQCVFETMIEK-GVEPN 221

Query: 313 THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFN 372
            + YN ++  YC  ++   A KL + MV  G  P +++YNIL +   K  ++ EA GL  
Sbjct: 222 VNTYNALMDGYCSQSQMDEAQKLFNIMVRKGCAPSVRSYNILIKGHCKSGRIDEAKGLLA 281

Query: 373 EMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMH 432
           EM       +       ++ +     P  A K  + M          T ++++ GLC   
Sbjct: 282 EMSHKALTPDTVTYSTLMKGFCQDGRPQDAQKLLEEMRSYGLLPDLMTYSIVLDGLCKQG 341

Query: 433 MLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELL 476
            L EA +  K M E  I+   F  + L Q +    K     EL 
Sbjct: 342 HLDEAFELLKAMQESKIEPNIFIYTILIQGMCNFGKLEAARELF 385



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 78/327 (23%), Positives = 140/327 (42%), Gaps = 11/327 (3%)

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-----IKPDNDTYAILLEGWE 215
           M+    + DV+ L  L++  C      D + F   V G      ++P++ T++ LL G  
Sbjct: 1   MDLSNIRPDVYTLTILINCFCHSNH--DHFHFAFSVLGNMFKLGLQPNHVTFSTLLNGLS 58

Query: 216 KERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNP 275
            +  + +A K F EMV ++G++PD V  Y + +  L K        +  LK+M E+GC P
Sbjct: 59  SKAKIIDAVKLFDEMV-KMGYEPD-VITYSTIINGLCK-MGSTTMAIQLLKKMEEKGCKP 115

Query: 276 GMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKL 335
            +  +    +     + +  A      MV R G  P+   Y+ ++  +C    +  A  L
Sbjct: 116 NVVVYSTIIDSLCKDKLITEAMEFLSEMVNR-GISPNVVTYSSILHGFCNLGRSNEATSL 174

Query: 336 LDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMD 395
             +MV     PD  T+NIL + L K   + EA  +F  M++     N     A +  Y  
Sbjct: 175 FKQMVERNVMPDTVTFNILVDGLSKEGMILEAQCVFETMIEKGVEPNVNTYNALMDGYCS 234

Query: 396 SDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFA 455
                 A K +  M+   C+    + N+L+ G C    + EA      M+ K +      
Sbjct: 235 QSQMDEAQKLFNIMVRKGCAPSVRSYNILIKGHCKSGRIDEAKGLLAEMSHKALTPDTVT 294

Query: 456 LSKLKQILIKARKEAVYEELLKKCKAH 482
            S L +   +  +    ++LL++ +++
Sbjct: 295 YSTLMKGFCQDGRPQDAQKLLEEMRSY 321



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 65/249 (26%), Positives = 116/249 (46%), Gaps = 19/249 (7%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-F 192
           ++  ++++  S      + +A+     M   G   +V   +S+L   C  G++ +A   F
Sbjct: 116 NVVVYSTIIDSLCKDKLITEAMEFLSEMVNRGISPNVVTYSSILHGFCNLGRSNEATSLF 175

Query: 193 LRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
            ++V+  + PD  T+ IL++G  KE  +  A+  F E +IE G +P NV  Y++ +    
Sbjct: 176 KQMVERNVMPDTVTFNILVDGLSKEGMILEAQCVF-ETMIEKGVEP-NVNTYNALM---- 229

Query: 253 KGCDG------IYETVNSLKRMMERGCNPGMTFFKLAFE-ECLTGQNLRGAEFIWGAMVG 305
              DG      + E       M+ +GC P +  + +  +  C +G+ +  A+ +   M  
Sbjct: 230 ---DGYCSQSQMDEAQKLFNIMVRKGCAPSVRSYNILIKGHCKSGR-IDEAKGLLAEMSH 285

Query: 306 RIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLW 365
           +    PDT  Y+ ++  +C       A KLL+EM   G  PD+ TY+I+ + L K   L 
Sbjct: 286 K-ALTPDTVTYSTLMKGFCQDGRPQDAQKLLEEMRSYGLLPDLMTYSIVLDGLCKQGHLD 344

Query: 366 EASGLFNEM 374
           EA  L   M
Sbjct: 345 EAFELLKAM 353



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 75/330 (22%), Positives = 135/330 (40%), Gaps = 53/330 (16%)

Query: 103 AWNLVVDLLGK-------NCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAI 155
            +N++VD L K        C+F+ M   I+   + NV    T+ ++   Y    ++ +A 
Sbjct: 189 TFNILVDGLSKEGMILEAQCVFETM---IEKGVEPNV---NTYNALMDGYCSQSQMDEAQ 242

Query: 156 TTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGW 214
             F++M + GC   V + N L+   C+ G+  +A   L  +  + + PD  TY+ L++G+
Sbjct: 243 KLFNIMVRKGCAPSVRSYNILIKGHCKSGRIDEAKGLLAEMSHKALTPDTVTYSTLMKGF 302

Query: 215 EKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCN 274
            ++    +A+K   EM    G  PD +    +Y I L    DG+                
Sbjct: 303 CQDGRPQDAQKLLEEMR-SYGLLPDLM----TYSIVL----DGL---------------- 337

Query: 275 PGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMK 334
                       C  G      E +      +I   P+  +Y ++I   C   +  AA +
Sbjct: 338 ------------CKQGHLDEAFELLKAMQESKI--EPNIFIYTILIQGMCNFGKLEAARE 383

Query: 335 LLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYM 394
           L   +   G  PD+ TY ++   L+KG    EA  LF +M  +  + N       ++ ++
Sbjct: 384 LFSNLFVKGIQPDVVTYTVMISGLLKGGLSNEACELFRDMAVHGCLPNSCTYNVIIQGFL 443

Query: 395 DSDDPYVAIKFWKYMIENHCSDLSETGNLL 424
            + D   A +  + M+    S  S T  +L
Sbjct: 444 RNGDTSNAGRLIEEMVGRGFSADSSTFQML 473


>gi|302775073|ref|XP_002970953.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
 gi|300161664|gb|EFJ28279.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
          Length = 577

 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 91/358 (25%), Positives = 155/358 (43%), Gaps = 23/358 (6%)

Query: 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKEN--VLSLATFASVFSSYVVADRVKDAITTFD 159
           Y +N+++    K    DA   ++      N   + + T+ ++        ++++A+   +
Sbjct: 232 YTYNILISGFCKAGNTDAASHSLAQETTINGCTIDIHTYTAIVDWLAKNKKIEEAVALME 291

Query: 160 VMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYAILLEGWEKER 218
            +   GC   +   N+LL+ +C+ G+  +A   LR +VD    PD  TY  L++G  KE+
Sbjct: 292 KITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEK 351

Query: 219 DVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMT 278
               A K F EM +  G   D V  Y + +  LL+    I +  +  K M   GC P + 
Sbjct: 352 RSFEAYKLFKEMALR-GLALDTV-CYTALIRELLQT-GKIPQASSVYKTMTSHGCVPDVV 408

Query: 279 FFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDE 338
                 +       +  A  I+ +M  R G  P+  +Y+ +I   C + +   A+++L +
Sbjct: 409 TLSTMIDGLSKAGRIGAAVRIFKSMEAR-GLAPNEVVYSALIHGLCKARKMDCALEMLAQ 467

Query: 339 MVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM--------VKNENVLNHENCRAAV 390
           M      PD  TYNIL + L K   +  A   F+EM        V   N+L    C+A  
Sbjct: 468 MKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFCKAG- 526

Query: 391 RVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448
               ++D    A   +  M  + CS    T   L++GLC    L +A  Y + M E+G
Sbjct: 527 ----NTD---AACGVFDDMSSSRCSANVVTYGALISGLCKRRQLTKASLYFQHMKERG 577



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 86/335 (25%), Positives = 136/335 (40%), Gaps = 39/335 (11%)

Query: 150 RVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYA 208
           ++++A+   + +   GC   +   N+LL+ +C+ G+  +A   LR +VD    PD  TY 
Sbjct: 1   KIEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYT 60

Query: 209 ILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRM 268
            L++G  KE+    A K F EM +  G   D V  Y + +  LL+    I +  +  K M
Sbjct: 61  SLIDGLGKEKRSFEAYKLFKEMALR-GLALDTV-CYTALIRELLQT-GKIPQASSVYKTM 117

Query: 269 MERGCNPGMTFFKLAFE---------------ECLTGQNLRGAEFIWGAMV-GRIGFR-- 310
              GC P +       +               + +  + L   E ++ A++ G    R  
Sbjct: 118 TSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKM 177

Query: 311 ----------------PDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNIL 354
                           PDT  YN++I   C S +  AA    DEM+  G  PD+ TYNIL
Sbjct: 178 DCALEMLAQMKKAFCTPDTITYNVLIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNIL 237

Query: 355 FEFLVKGRKLWEAS-GLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENH 413
                K      AS  L  E   N   ++     A V     +     A+   + +  N 
Sbjct: 238 ISGFCKAGNTDAASHSLAQETTINGCTIDIHTYTAIVDWLAKNKKIEEAVALMEKITANG 297

Query: 414 CSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448
           C+    T N L+ GLC M  L EA+   + + + G
Sbjct: 298 CTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNG 332



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 85/347 (24%), Positives = 144/347 (41%), Gaps = 4/347 (1%)

Query: 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL- 193
           + T +++      A R+  A+  F  ME  G   +    ++L+  +C+  K   A + L 
Sbjct: 126 VVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLA 185

Query: 194 RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLK 253
           ++      PD  TY +L++G  K  DV  A+  F EM +E G  PD V  Y+  +    K
Sbjct: 186 QMKKAFCTPDTITYNVLIDGLCKSGDVEAARAFFDEM-LEAGCKPD-VYTYNILISGFCK 243

Query: 254 GCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDT 313
             +    + +  +     GC   +  +    +     + +  A  +   +    G  P  
Sbjct: 244 AGNTDAASHSLAQETTINGCTIDIHTYTAIVDWLAKNKKIEEAVALMEKITAN-GCTPTI 302

Query: 314 HMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNE 373
             YN +++  C       A+ LL ++V NG  PD+ TY  L + L K ++ +EA  LF E
Sbjct: 303 ATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKE 362

Query: 374 MVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHM 433
           M      L+     A +R  + +     A   +K M  + C     T + ++ GL     
Sbjct: 363 MALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGR 422

Query: 434 LPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKCK 480
           +  AV+  K M  +G+       S L   L KARK     E+L + K
Sbjct: 423 IGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMK 469



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 75/173 (43%)

Query: 308 GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEA 367
           G  P    YN +++  C       A+ LL ++V NG  PD+ TY  L + L K ++ +EA
Sbjct: 16  GCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEA 75

Query: 368 SGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAG 427
             LF EM      L+     A +R  + +     A   +K M  + C     T + ++ G
Sbjct: 76  YKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDG 135

Query: 428 LCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKCK 480
           L     +  AV+  K M  +G+       S L   L KARK     E+L + K
Sbjct: 136 LSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMK 188


>gi|356532610|ref|XP_003534864.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Glycine max]
          Length = 642

 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 102/389 (26%), Positives = 179/389 (46%), Gaps = 19/389 (4%)

Query: 81  PGPAVKFFR--WSAYQLNDKHSPYAWNLVVDLLGKNCLFD---AMWDAIKSMKKENVLSL 135
           P  AV  F   W  +Q   K +  ++N V++++ +  LF+     ++ + + K  N+   
Sbjct: 112 PEKAVDLFHRMWGEFQC--KQTVKSFNSVLNVIVQEGLFNRALEFYNHVVASKSLNIHPN 169

Query: 136 A-TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL- 193
           A TF  V  +      V  AI  F  +    C  D +  ++L+  +C++ +  +A   L 
Sbjct: 170 ALTFNLVIKAMCRLGLVDKAIEVFREIPLRNCAPDNYTYSTLMHGLCKEERIDEAVSLLD 229

Query: 194 -RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITL- 251
              V+G   P+   + +L+    K+ D+  A K    M ++ G  P+ V  Y++ +  L 
Sbjct: 230 EMQVEGTF-PNLVAFNVLISALCKKGDLGRAAKLVDNMFLK-GCVPNEV-TYNALVHGLC 286

Query: 252 LKGCDGIYETVNSLKRMMERGCNPG-MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFR 310
           LKG   + + V+ L +M+   C P  +TF  L     + G+   G   +  ++  R G R
Sbjct: 287 LKG--KLEKAVSLLNQMVSNKCVPNDVTFGTLINGFVMQGRASDGTR-VLVSLEAR-GHR 342

Query: 311 PDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGL 370
            + ++Y+ +IS  C   +   AM+L  EMV  G  P+   Y+ L + L +  KL EA G 
Sbjct: 343 GNEYVYSSLISGLCKEGKFNQAMELWKEMVGKGCGPNTIVYSALIDGLCREGKLDEARGF 402

Query: 371 FNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCD 430
            +EM     + N     + +R Y ++ D + AI  WK M  N+C       ++L+ GLC 
Sbjct: 403 LSEMKNKGYLPNSFTYSSLMRGYFEAGDSHKAILVWKEMANNNCIHNEVCYSILINGLCK 462

Query: 431 MHMLPEAVKYAKGMAEKGIQVTPFALSKL 459
                EA+   K M  +GI++   A S +
Sbjct: 463 DGKFMEALMVWKQMLSRGIKLDVVAYSSM 491



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/243 (23%), Positives = 108/243 (44%), Gaps = 7/243 (2%)

Query: 136 ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRV 195
            TF ++ + +V+  R  D       +E  G + + +  +SL+S +C++GK   A +  + 
Sbjct: 311 VTFGTLINGFVMQGRASDGTRVLVSLEARGHRGNEYVYSSLISGLCKEGKFNQAMELWKE 370

Query: 196 VDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG 254
           + G+   P+   Y+ L++G  +E  +  A+    EM  + G+ P++   Y S +    + 
Sbjct: 371 MVGKGCGPNTIVYSALIDGLCREGKLDEARGFLSEMKNK-GYLPNSF-TYSSLMRGYFEA 428

Query: 255 CDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTH 314
            D  ++ +   K M    C      + +             A  +W  M+ R G + D  
Sbjct: 429 GDS-HKAILVWKEMANNNCIHNEVCYSILINGLCKDGKFMEALMVWKQMLSR-GIKLDVV 486

Query: 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAF--PDIQTYNILFEFLVKGRKLWEASGLFN 372
            Y+ MI  +C +N     +KL ++M+  G    PD+ TYNIL       + ++ A  + N
Sbjct: 487 AYSSMIHGFCNANLVEQGLKLFNQMLCQGPVVQPDVITYNILLNAFCIQKSIFRAIDILN 546

Query: 373 EMV 375
            M+
Sbjct: 547 IML 549


>gi|242041823|ref|XP_002468306.1| hypothetical protein SORBIDRAFT_01g043390 [Sorghum bicolor]
 gi|241922160|gb|EER95304.1| hypothetical protein SORBIDRAFT_01g043390 [Sorghum bicolor]
          Length = 519

 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 101/439 (23%), Positives = 182/439 (41%), Gaps = 16/439 (3%)

Query: 47  ANTPSPTVEDVLDKTLIRVSQETVEQVLK-FSYSHPGPAVKFFRWSAY--QLNDKHSPYA 103
           A TPS  +E  L  + + +S   ++ V++ F ++H  P       S    +     SPYA
Sbjct: 54  AATPS-AMESALAASAVPLSSPLLDAVMRRFRFAHGDPLRALSLLSLAADRGGVAPSPYA 112

Query: 104 WNLVVDLLGKNCLFDAMWDAIKSMKK--ENVLSLATFASVFSSYVVADRVKDAITTFDVM 161
            +  + +LG+   F  MWD + + ++   + ++  T   V         V + + +F  +
Sbjct: 113 IDTALYVLGRARRFPHMWDLLATTRRICPDAVTSRTAMIVLGRVAKVCSVHETVASFRRL 172

Query: 162 EQYGCKHDVFAL-NSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDV 220
            +     D   L N+LL  +C++    DA      +    + +  T+ ILL GW+   D 
Sbjct: 173 ARMFHAVDPACLFNALLRTLCQEKSMSDARNVFHALKYDFRVNRHTFNILLSGWKSAEDA 232

Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGM-TF 279
               + F   + E+G +PD V  Y+S +    K  D + +    L  M E+  +P + T+
Sbjct: 233 ----EAFVAEMRELGVEPDLV-TYNSLIDCHCKNRD-VEKAYKLLDEMREKDISPDIITY 286

Query: 280 FKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEM 339
             L     L GQ  +  + +    +  +G  PD   YN  I  +  +   G A  L+D+M
Sbjct: 287 TSLIGGLGLIGQPDKARDLL--KEMHELGCSPDVPAYNAAIRNFVIAKRLGDAFALMDQM 344

Query: 340 VYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDP 399
              G  P+  TYN+ F        +     L+  M       N ++C   +R+       
Sbjct: 345 ASKGLMPNPTTYNLFFRCYYWAFDIGSTWRLYERMRSEGCFPNTQSCMFIIRLCHRYGKV 404

Query: 400 YVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKL 459
             A++ W  M+ N     +   ++L   LCD   L E  +    M E G + +  A  ++
Sbjct: 405 GQALELWSDMVSNRFGSFTLVSDVLFDLLCDEGKLEEVERCFCQMVEFGQKPSNVAFRRI 464

Query: 460 KQILIKARKEAVYEELLKK 478
           K ++  A++E     L +K
Sbjct: 465 KILMQVAKQEESIARLTEK 483


>gi|255542990|ref|XP_002512558.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548519|gb|EEF50010.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 511

 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 124/498 (24%), Positives = 206/498 (41%), Gaps = 58/498 (11%)

Query: 16  DPHNKRKRSTFASHLDVPNLPPT--IKTLCEIIANTPSP--TVEDVLDKTLIRVSQETVE 71
            P N R +  F++   +P+L P+   + + EI+ N  +P   +E  L    I +S   + 
Sbjct: 15  SPPNLRVQCLFST-FSLPSLEPSNDAEIVSEILLNHHNPFHAMESSLQLHGITLSSSLLH 73

Query: 72  QVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKEN 131
           Q L     +   A+ FF +S    +   +   +NL++D+L K   FD  W  I  M + N
Sbjct: 74  QTLLRLRHNSKIALSFFHYSLSLPSSSVNTTTYNLIIDILSKVRQFDVSWQLIIQMDQNN 133

Query: 132 VLSLA-TFASVFSSYVVADRVKDAITTFDVMEQYGCK-----HDVFALNSLLSAICRDGK 185
           +   + TF  +    + A   + AI  FD ME +  +     H  F L++L    C+ G 
Sbjct: 134 LQPNSHTFLILIRRLISAGFTRQAIRAFDDMESFIAETVNQTHFCFLLDTL----CKYGY 189

Query: 186 TIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYD 245
              A +       R  P+   Y +L+ GW K   +  A++   EM  E+G +  NV  Y+
Sbjct: 190 IKVAVEVFNKRKFRFLPNVRIYTVLIYGWCKIGRIDMAERFIREMD-EMGIEA-NVVTYN 247

Query: 246 SYLITLLKGC----DGIYETV-----NSLKRMMERGCNPGMTFFKL-------AFEECLT 289
             L  + +      +G +E            M ++G  P +T F +       A +  LT
Sbjct: 248 VLLDGICRRAKLQPEGRFERTIMKADKVFDEMRQKGIEPDVTSFSILLHVYSRAHKPQLT 307

Query: 290 GQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQ 349
              L+  E         +G  P    Y  ++   C       A +LL++MV NG  P+  
Sbjct: 308 VDKLKLME--------EMGICPTVATYTSVLKCLCSCGRIDDAEELLEQMVRNGVSPNAA 359

Query: 350 TYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYM 409
           TYN  F+   +GRK  E +      ++ EN+     C  +V  Y      +  +K  ++ 
Sbjct: 360 TYNCFFK-EYRGRKDPETALKLYRKIRQENL-----CDPSVHTYNILLGMF--MKLNRFN 411

Query: 410 IENHC-SDLSETGN--------LLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLK 460
           I N   +DL  +G+        LLV GLC+     +A ++   M EKG+         L 
Sbjct: 412 IVNEIWNDLRSSGSGPDLDSYTLLVHGLCEKQKWQKACQFFVEMIEKGLLPQKATFEMLY 471

Query: 461 QILIKARKEAVYEELLKK 478
             LI++     +  L KK
Sbjct: 472 AGLIQSNMLRTWRRLKKK 489


>gi|359488005|ref|XP_002263693.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 586

 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 121/248 (48%), Gaps = 5/248 (2%)

Query: 136 ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRV 195
           ATF ++     V  ++ DA+  FD M   G + +V    +L++ +C+ G T  A + LR 
Sbjct: 140 ATFTTLIRGLCVEGKIGDALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTNAAIRLLRS 199

Query: 196 VD-GRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG 254
           ++ G  +PD   Y  +++   K+R V  A   F +MV + G  PD +  Y S + +L   
Sbjct: 200 MEQGNCQPDVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQ-GISPD-IFTYTSLIHSLCNL 257

Query: 255 CDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTH 314
           C+  + T   L +M+     P +  F    +       +  A  +   M+ R G  P+  
Sbjct: 258 CEWKHVTT-LLNQMINSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIR-GVEPNVV 315

Query: 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
            YN ++  +C  +E   A+K+ D MV+NG  P++ +YN L     K +++ +A+ LF EM
Sbjct: 316 TYNALMDGHCLQSEMDEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEM 375

Query: 375 VKNENVLN 382
            + E + N
Sbjct: 376 CQKELIPN 383



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 69/287 (24%), Positives = 120/287 (41%), Gaps = 13/287 (4%)

Query: 95  LNDKHSP--YAWNLVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASVFSSYVVADRV 151
           +N K  P    ++ VVD L K        D +  M    V  ++ T+ ++   + +   +
Sbjct: 271 INSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEM 330

Query: 152 KDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDA-WQFLRVVDGRIKPDNDTYAIL 210
            +A+  FD M   G   +V + N+L++  C+  +   A + F  +    + P+  TY  L
Sbjct: 331 DEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTL 390

Query: 211 LEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIY--ETVNSLKRM 268
           +      R + +A   F EMV         +P   +Y I L   C   +  E +  LK +
Sbjct: 391 MHXCHVGR-LQDAIALFHEMVAH-----GQIPDLATYRILLDYLCKKSHLDEAMALLKTI 444

Query: 269 MERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNE 328
                +P +  + +  +       L  A  I+  +  + G RP+   Y +MI+  C    
Sbjct: 445 EGSNMDPDIQIYTIVIDGMCRAGELEAARDIFSNLSSK-GLRPNVRTYTIMINGLCRRGL 503

Query: 329 TGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
              A KL  EM  NG  PD  TYN + + L++ ++   A  L  EM+
Sbjct: 504 LDEANKLFMEMDGNGCSPDGCTYNTITQGLLQNKEALRAIQLLQEML 550



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 82/382 (21%), Positives = 153/382 (40%), Gaps = 39/382 (10%)

Query: 84  AVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVF 142
           A++  R S  Q N +     +  ++D L K+      ++    M  + +   + T+ S+ 
Sbjct: 193 AIRLLR-SMEQGNCQPDVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQGISPDIFTYTSLI 251

Query: 143 SSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IK 201
            S       K   T  + M       DV   ++++ A+C++GK  +A   + ++  R ++
Sbjct: 252 HSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVE 311

Query: 202 PDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDS--------------- 246
           P+  TY  L++G   + ++  A K F  MV   G+ P NV +Y++               
Sbjct: 312 PNVVTYNALMDGHCLQSEMDEAVKVFDTMV-HNGYAP-NVISYNTLINGYCKIQRMDKAT 369

Query: 247 YLI----------------TLLKGC--DGIYETVNSLKRMMERGCNPGMTFFKLAFEECL 288
           YL                 TL+  C    + + +     M+  G  P +  +++  +   
Sbjct: 370 YLFEEMCQKELIPNTVTYNTLMHXCHVGRLQDAIALFHEMVAHGQIPDLATYRILLDYLC 429

Query: 289 TGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDI 348
              +L  A  +   + G     PD  +Y ++I   C + E  AA  +   +   G  P++
Sbjct: 430 KKSHLDEAMALLKTIEGS-NMDPDIQIYTIVIDGMCRAGELEAARDIFSNLSSKGLRPNV 488

Query: 349 QTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKY 408
           +TY I+   L +   L EA+ LF EM  N    +        +  + + +   AI+  + 
Sbjct: 489 RTYTIMINGLCRRGLLDEANKLFMEMDGNGCSPDGCTYNTITQGLLQNKEALRAIQLLQE 548

Query: 409 MIENHCSDLSETGNLLVAGLCD 430
           M+    S    T  LLV  LCD
Sbjct: 549 MLARGFSADVSTTTLLVEMLCD 570



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 35/152 (23%), Positives = 62/152 (40%)

Query: 308 GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEA 367
           G  PD +  N++I+ +C+ N  G A  +L +++  G  PD  T+  L   L    K+ +A
Sbjct: 99  GIPPDVYTLNILINSFCHLNRLGFAFSVLAKILKLGHQPDTATFTTLIRGLCVEGKIGDA 158

Query: 368 SGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAG 427
             LF++M+      N       +       +   AI+  + M + +C         ++  
Sbjct: 159 LHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDS 218

Query: 428 LCDMHMLPEAVKYAKGMAEKGIQVTPFALSKL 459
           LC    + EA      M  +GI    F  + L
Sbjct: 219 LCKDRQVTEAFNLFSKMVGQGISPDIFTYTSL 250



 Score = 46.2 bits (108), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 56/136 (41%), Gaps = 9/136 (6%)

Query: 259 YETVNSLKRMMER-GCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYN 317
           Y TV SL   M+  G  P +    +         N  G  F   A + ++G +PDT  + 
Sbjct: 85  YPTVFSLSNQMDSFGIPPDVYTLNILINS-FCHLNRLGFAFSVLAKILKLGHQPDTATFT 143

Query: 318 MMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKN 377
            +I   C   + G A+ L D+M+  G  P++ TY  L   L K        G  N  ++ 
Sbjct: 144 TLIRGLCVEGKIGDALHLFDKMIGEGFQPNVVTYGTLINGLCK-------VGNTNAAIRL 196

Query: 378 ENVLNHENCRAAVRVY 393
              +   NC+  V VY
Sbjct: 197 LRSMEQGNCQPDVVVY 212


>gi|297835856|ref|XP_002885810.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331650|gb|EFH62069.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 536

 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 104/438 (23%), Positives = 176/438 (40%), Gaps = 40/438 (9%)

Query: 72  QVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKEN 131
           +V+K   ++P    +F+ +S ++LN +HS + +NL+   L K  + D      + MK + 
Sbjct: 74  EVVKKLDNNPHIGFRFWEFSRFKLNIRHSFWTYNLLTRSLCKAGMHDLAGQMFECMKSDG 133

Query: 132 V--------LSLATFA--------------------------SVFSSYVVADRVKDAITT 157
           +          +++FA                          S+ ++ V  DRV+DA+  
Sbjct: 134 ISPNSRLLGFLVSSFAEKGKLHCATALLLQSYEVEGCCMVVNSLLNTLVKLDRVEDAMKL 193

Query: 158 FDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDG-RIKPDNDTYAILLEGWEK 216
           F+   ++   +D    N L+  +C  GK   A + L  + G    PD  TY  L++G+ K
Sbjct: 194 FEEHLRFQSCNDTKTFNILIRGLCGVGKAEKAVELLGGMSGFGCLPDIVTYNTLIKGFCK 253

Query: 217 ERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPG 276
             ++  A + F ++    G  PD V  Y S +    K    + E    L  M+  G  P 
Sbjct: 254 SNELKKANEMFDDVKSSSGCSPD-VVTYTSMISGYCKA-GKMQEASVLLDDMLRLGIYPT 311

Query: 277 MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLL 336
              F +  +       +  AE I G M+   G  PD   +  +I  YC   +     +L 
Sbjct: 312 NVTFNVLVDGYAKAGEMHTAEEIRGKMIS-FGCFPDVVTFTSLIDGYCRVGQVNQGFRLW 370

Query: 337 DEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDS 396
           +EM   G FP+  TY+IL   L K  +L +A  L  ++   + +         +  +  +
Sbjct: 371 EEMNARGMFPNAFTYSILINALCKENRLLKARELLGQLASKDIIPQPFMYNPVIDGFCKA 430

Query: 397 DDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFAL 456
                AI   + M +  C     T  +L+ G C    + EAV     M   G       +
Sbjct: 431 GKVNEAIVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSIFHKMVAIGCSPDKITV 490

Query: 457 SKLKQILIKA--RKEAVY 472
           S L   L+KA   KEA +
Sbjct: 491 SSLLSCLLKAGMAKEAYH 508


>gi|147788022|emb|CAN69338.1| hypothetical protein VITISV_032632 [Vitis vinifera]
          Length = 585

 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 121/248 (48%), Gaps = 5/248 (2%)

Query: 136 ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRV 195
           ATF ++     V  ++ DA+  FD M   G + +V    +L++ +C+ G T  A + LR 
Sbjct: 138 ATFTTLIRGLCVEGKIGDALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTNAAIRLLRS 197

Query: 196 VD-GRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG 254
           ++ G  +PD   Y  +++   K+R V  A   F +MV + G  PD +  Y S + +L   
Sbjct: 198 MEQGNCQPDVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQ-GISPD-IFTYTSLIHSLCNL 255

Query: 255 CDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTH 314
           C+  + T   L +M+     P +  F    +       +  A  +   M+ R G  P+  
Sbjct: 256 CEWKHVTT-LLNQMINSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIR-GVEPNVV 313

Query: 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
            YN ++  +C  +E   A+K+ D MV+NG  P++ +YN L     K +++ +A+ LF EM
Sbjct: 314 TYNALMDGHCLQSEMDEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEM 373

Query: 375 VKNENVLN 382
            + E + N
Sbjct: 374 CQKELIPN 381



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 69/287 (24%), Positives = 120/287 (41%), Gaps = 12/287 (4%)

Query: 95  LNDKHSP--YAWNLVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASVFSSYVVADRV 151
           +N K  P    ++ VVD L K        D +  M    V  ++ T+ ++   + +   +
Sbjct: 269 INSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEM 328

Query: 152 KDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDA-WQFLRVVDGRIKPDNDTYAIL 210
            +A+  FD M   G   +V + N+L++  C+  +   A + F  +    + P+  TY  L
Sbjct: 329 DEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTL 388

Query: 211 LEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIY--ETVNSLKRM 268
           + G      + +A   F EMV         +P   +Y I L   C   +  E +  LK +
Sbjct: 389 MHGLCHVGRLQDAIALFHEMVAH-----GQIPDLATYRILLDYLCKKSHLDEAMALLKTI 443

Query: 269 MERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNE 328
                +P +  + +  +       L  A  I+  +  + G RP+   Y +MI+  C    
Sbjct: 444 EGSNMDPDIQIYTIVIDGMCRAGELEAARDIFSNLSSK-GLRPNVRTYTIMINGLCRRGL 502

Query: 329 TGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
              A KL  EM  NG  PD  TYN + + L++ ++   A  L  EM+
Sbjct: 503 LDEANKLFMEMDGNGCSPDGCTYNTITQGLLQNKEALRAIQLLQEML 549



 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 91/391 (23%), Positives = 157/391 (40%), Gaps = 54/391 (13%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-F 192
           ++ T+ ++ +          AI     MEQ  C+ DV    S++ ++C+D +  +A+  F
Sbjct: 171 NVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTEAFNLF 230

Query: 193 LRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
            ++V   I PD  TY  L+       +  +      +M I     PD V  + + +  L 
Sbjct: 231 SKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQM-INSKIMPD-VVIFSTVVDALC 288

Query: 253 KGCDGIYETVNSLKRMMERGCNPG-MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRP 311
           K    I E  + +  M+ RG  P  +T+  L    CL  + +  A  ++  MV   G+ P
Sbjct: 289 KE-GKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSE-MDEAVKVFDTMVHN-GYAP 345

Query: 312 DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLF 371
           +   YN +I+ YC       A  L +EM      P+  TYN L   L    +L +A  LF
Sbjct: 346 NVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHGLCHVGRLQDAIALF 405

Query: 372 NEMVKNENVLNHENCRAAVRVYMD---------------------SDDPYVAIKFWKYMI 410
           +EMV +  + +     A  R+ +D                     + DP   I+ +  +I
Sbjct: 406 HEMVAHGQIPD----LATYRILLDYLCKKSHLDEAMALLKTIEGSNMDP--DIQIYTIVI 459

Query: 411 ENHC------------SDLSETG--------NLLVAGLCDMHMLPEAVKYAKGMAEKGIQ 450
           +  C            S+LS  G         +++ GLC   +L EA K    M   G  
Sbjct: 460 DGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEANKLFMEMDGNGCS 519

Query: 451 VTPFALSKLKQILIKARKEAVYEELLKKCKA 481
                 + + Q L++ ++     +LL++  A
Sbjct: 520 PDGCTYNTITQGLLQNKEALRAIQLLQEMLA 550



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 82/383 (21%), Positives = 153/383 (39%), Gaps = 40/383 (10%)

Query: 84  AVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVF 142
           A++  R S  Q N +     +  ++D L K+      ++    M  + +   + T+ S+ 
Sbjct: 191 AIRLLR-SMEQGNCQPDVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQGISPDIFTYTSLI 249

Query: 143 SSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IK 201
            S       K   T  + M       DV   ++++ A+C++GK  +A   + ++  R ++
Sbjct: 250 HSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVE 309

Query: 202 PDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDS--------------- 246
           P+  TY  L++G   + ++  A K F  MV   G+ P NV +Y++               
Sbjct: 310 PNVVTYNALMDGHCLQSEMDEAVKVFDTMV-HNGYAP-NVISYNTLINGYCKIQRMDKAT 367

Query: 247 YLI----------------TLLKG---CDGIYETVNSLKRMMERGCNPGMTFFKLAFEEC 287
           YL                 TL+ G      + + +     M+  G  P +  +++  +  
Sbjct: 368 YLFEEMCQKELIPNTVTYNTLMHGLCHVGRLQDAIALFHEMVAHGQIPDLATYRILLDYL 427

Query: 288 LTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPD 347
               +L  A  +   + G     PD  +Y ++I   C + E  AA  +   +   G  P+
Sbjct: 428 CKKSHLDEAMALLKTIEGS-NMDPDIQIYTIVIDGMCRAGELEAARDIFSNLSSKGLRPN 486

Query: 348 IQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWK 407
           ++TY I+   L +   L EA+ LF EM  N    +        +  + + +   AI+  +
Sbjct: 487 VRTYTIMINGLCRRGLLDEANKLFMEMDGNGCSPDGCTYNTITQGLLQNKEALRAIQLLQ 546

Query: 408 YMIENHCSDLSETGNLLVAGLCD 430
            M+    S    T  LLV  LCD
Sbjct: 547 EMLARGFSADVSTTTLLVEMLCD 569



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 35/152 (23%), Positives = 62/152 (40%)

Query: 308 GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEA 367
           G  PD +  N++I+ +C+ N  G A  +L +++  G  PD  T+  L   L    K+ +A
Sbjct: 97  GIPPDVYTLNILINSFCHLNRPGFAFSVLAKILKLGLQPDTATFTTLIRGLCVEGKIGDA 156

Query: 368 SGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAG 427
             LF++M+      N       +       +   AI+  + M + +C         ++  
Sbjct: 157 LHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDS 216

Query: 428 LCDMHMLPEAVKYAKGMAEKGIQVTPFALSKL 459
           LC    + EA      M  +GI    F  + L
Sbjct: 217 LCKDRQVTEAFNLFSKMVGQGISPDIFTYTSL 248



 Score = 47.0 bits (110), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 56/136 (41%), Gaps = 9/136 (6%)

Query: 259 YETVNSLKRMMER-GCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYN 317
           Y TV SL   M+  G  P +    +         N  G  F   A + ++G +PDT  + 
Sbjct: 83  YPTVFSLSNQMDSFGIPPDVYTLNILINS-FCHLNRPGFAFSVLAKILKLGLQPDTATFT 141

Query: 318 MMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKN 377
            +I   C   + G A+ L D+M+  G  P++ TY  L   L K        G  N  ++ 
Sbjct: 142 TLIRGLCVEGKIGDALHLFDKMIGEGFQPNVVTYGTLINGLCK-------VGNTNAAIRL 194

Query: 378 ENVLNHENCRAAVRVY 393
              +   NC+  V VY
Sbjct: 195 LRSMEQGNCQPDVVVY 210


>gi|2827705|emb|CAA16678.1| predicted protein [Arabidopsis thaliana]
          Length = 598

 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 103/407 (25%), Positives = 164/407 (40%), Gaps = 79/407 (19%)

Query: 52  PTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLL 111
           P +E  L+++ + +    +E+VL           +FF W+A Q    HS   +  +V +L
Sbjct: 91  PKLELALNESGVELRPGLIERVLNRCGDAGNLGYRFFVWAAKQPRYCHSIEVYKSMVKIL 150

Query: 112 GKNCLFDAMWDAIKSMKKEN--VLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHD 169
            K   F A+W  I+ M+KEN  ++    F  +   +  AD VK AI   D M ++G + D
Sbjct: 151 SKMRQFGAVWGLIEEMRKENPQLIEPELFVVLVQRFASADMVKKAIEVLDEMPKFGFEPD 210

Query: 170 VFALNSLLSAICRDGKTIDAWQFLRVVDGRI------------------KPDNDTYAILL 211
            +    LL A+C+ G   DA +    +  R+                  +PD   Y  LL
Sbjct: 211 EYVFGCLLDALCKHGSVKDAAKLFEDMRMRVGKMMEAKYVLVQMNEAGFEPDIVDYTNLL 270

Query: 212 EGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVN-------- 263
            G+     +A+A     +M    G++P N   Y + LI  L   D + E +         
Sbjct: 271 SGYANAGKMADAYDLLRDMR-RRGFEP-NANCY-TVLIQALCKVDRMEEAMKVFVEMERY 327

Query: 264 ---------------------------SLKRMMERGCNPG-MTFF--------KLAFEEC 287
                                       L  M+++G  P  +T+         K +FEEC
Sbjct: 328 ECEADVVTYTALVSGFCKWGKIDKCYIVLDDMIKKGLMPSELTYMHIMVAHEKKESFEEC 387

Query: 288 LT-GQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFP 346
           L   + +R           +I + PD  +YN++I L C   E   A++L +EM  NG  P
Sbjct: 388 LELMEKMR-----------QIEYHPDIGIYNVVIRLACKLGEVKEAVRLWNEMEENGLSP 436

Query: 347 DIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVY 393
            + T+ I+   L     L EAS  F EM+    VL  +    A  V+
Sbjct: 437 GVDTFVIMINGLASQGCLLEASDHFKEMLLLNTVLKDKKLEMAKDVW 483


>gi|302775582|ref|XP_002971208.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
 gi|300161190|gb|EFJ27806.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
          Length = 599

 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 93/399 (23%), Positives = 158/399 (39%), Gaps = 80/399 (20%)

Query: 100 SPYAWNLVVDLLGKNCLFDAMWDAIKSMKKE-NVLSLATFASVFSSYVVADRVKDAITTF 158
           SP  +N+++D   K  + +   D IK M ++ +V  + T+ +V      + RV++A+  F
Sbjct: 79  SPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSRVEEALLLF 138

Query: 159 DVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKE 217
           + ME+ GC  +  + N+++  +C+  K   A Q    ++ + I PD+ +Y IL++G  K 
Sbjct: 139 NEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAKDIPPDSWSYGILIDGLAKA 198

Query: 218 RDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDG--IYETVNSLKRMMERGCNP 275
             +  A K F  M+     D    P+  +Y + +   C    + E +   K M  +GC  
Sbjct: 199 GKLNEAYKLFQRML-----DSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGC-- 251

Query: 276 GMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKL 335
                                             RP    +N++I  +C   +   A +L
Sbjct: 252 ----------------------------------RPSRFTFNILIDAHCKRGKLDEAFRL 277

Query: 336 LDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK--------NENVLNHENCR 387
           L  M  +G  PD+ TY+ L   L    ++ +A  L  +MVK         +N L H  C+
Sbjct: 278 LKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCK 337

Query: 388 AA----VRVYMD---SDDPYVAIKFWKYMIENHC------------SDLSETG------- 421
           A      R  +D   S      +  +  ++  HC            SD+   G       
Sbjct: 338 AGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVT 397

Query: 422 -NLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKL 459
              LV+GLC  + LPEA      M   G     F  + L
Sbjct: 398 YTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTAL 436



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 89/374 (23%), Positives = 143/374 (38%), Gaps = 41/374 (10%)

Query: 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDV 160
           +++ +++D L K    +  +   + M    +  S  T+  V     +A  + +A+  F  
Sbjct: 186 WSYGILIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKS 245

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERD 219
           M   GC+   F  N L+ A C+ GK  +A++ L R+ D    PD  TY+ L+ G      
Sbjct: 246 MRSKGCRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIAR 305

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGM-T 278
           V +A+    +MV +    P  V    + LI  L     I E    L  M+  G +P + T
Sbjct: 306 VDDARHLLEDMV-KRQCKPTVVT--QNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVT 362

Query: 279 FFKLAFEECLTGQNLRGAEFI--------------WGAMVGRI----------------- 307
           +  L    C  GQ  R  E +              + A+V  +                 
Sbjct: 363 YNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMK 422

Query: 308 --GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLW 365
             G  P+   Y  +I  +C + +    +KL  EMV  G  PD   Y  L   L K  +  
Sbjct: 423 SSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSA 482

Query: 366 EASGLFNEMVKN--ENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNL 423
            A  +  E  ++        E  R AV   +++    +A+ F + M+        E    
Sbjct: 483 RALEILREGRESLRSEAWGDEVYRFAVDGLLEAGKMEMALGFVRDMVRGGQLPAPERCAS 542

Query: 424 LVAGLCDMHMLPEA 437
           LVAGLC      EA
Sbjct: 543 LVAGLCKSGQGGEA 556



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 62/260 (23%), Positives = 117/260 (45%), Gaps = 4/260 (1%)

Query: 200 IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIY 259
           + PD+ +Y IL++G  K   + +A+  F + ++  G  P  V AY S LI  L   +   
Sbjct: 6   VSPDSWSYGILIDGLAKAGKLNDARNLF-QKLLHSGVTPSTV-AYTS-LIHGLCMANSFD 62

Query: 260 ETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMM 319
           +       M  RGC P    + +  +       L  A  +   M+   G  PD   YN +
Sbjct: 63  DARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMI-EDGHVPDVVTYNTV 121

Query: 320 ISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNEN 379
           +   C S+    A+ L +EM   G  P+ +++N +   L +  K+ +A  +F+EM   + 
Sbjct: 122 MDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAKDI 181

Query: 380 VLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVK 439
             +  +    +     +     A K ++ M+++  +  + T N+++ G+C  + L EA++
Sbjct: 182 PPDSWSYGILIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLDEALE 241

Query: 440 YAKGMAEKGIQVTPFALSKL 459
             K M  KG + + F  + L
Sbjct: 242 LFKSMRSKGCRPSRFTFNIL 261


>gi|334182516|ref|NP_172730.3| helicase domain and pentatricopeptide repeat-containing protein
           [Arabidopsis thaliana]
 gi|332190794|gb|AEE28915.1| helicase domain and pentatricopeptide repeat-containing protein
           [Arabidopsis thaliana]
          Length = 735

 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 88/346 (25%), Positives = 154/346 (44%), Gaps = 12/346 (3%)

Query: 99  HSPYAWNLVVDLLGKNCLFDAMWDAI-KSMKKENVLSLATFASVFSSYVVADRVKDAITT 157
           H+ Y  N++++   + C     +  + K MK        TF ++     +  +V +A+  
Sbjct: 121 HNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVL 180

Query: 158 FDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEK 216
            D M + GC+ DV   NS+++ ICR G T  A   LR ++ R +K D  TY+ +++   +
Sbjct: 181 VDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCR 240

Query: 217 ERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC---DGIYETVNSLKRMMERGC 273
           +  +  A   F EM  E      +V  Y+S +  L K     DG       LK M+ R  
Sbjct: 241 DGCIDAAISLFKEM--ETKGIKSSVVTYNSLVRGLCKAGKWNDGAL----LLKDMVSREI 294

Query: 274 NPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAM 333
            P +  F +  +  +    L+ A  ++  M+ R G  P+   YN ++  YC  N    A 
Sbjct: 295 VPNVITFNVLLDVFVKEGKLQEANELYKEMITR-GISPNIITYNTLMDGYCMQNRLSEAN 353

Query: 334 KLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVY 393
            +LD MV N   PDI T+  L +     +++ +   +F  + K   V N       V+ +
Sbjct: 354 NMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGF 413

Query: 394 MDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVK 439
             S    +A + ++ M+ +       T  +L+ GLCD   L +A++
Sbjct: 414 CQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALE 459



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 76/282 (26%), Positives = 138/282 (48%), Gaps = 14/282 (4%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVLS-LATFASVFSSYVVADRVKDAITTFDVM 161
            +N +V+ + ++       D ++ M++ NV + + T++++  S      +  AI+ F  M
Sbjct: 195 TYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEM 254

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYAILLEGWEKERDV 220
           E  G K  V   NSL+  +C+ GK  D    L+ +V   I P+  T+ +LL+ + KE  +
Sbjct: 255 ETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKL 314

Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG-C--DGIYETVNSLKRMMERGCNPGM 277
             A + + EM+   G  P N+  Y+    TL+ G C  + + E  N L  M+   C+P +
Sbjct: 315 QEANELYKEMITR-GISP-NIITYN----TLMDGYCMQNRLSEANNMLDLMVRNKCSPDI 368

Query: 278 -TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLL 336
            TF  L    C+  +   G +      + + G   +   Y++++  +C S +   A +L 
Sbjct: 369 VTFTSLIKGYCMVKRVDDGMKVFRN--ISKRGLVANAVTYSILVQGFCQSGKIKLAEELF 426

Query: 337 DEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNE 378
            EMV +G  PD+ TY IL + L    KL +A  +F ++ K++
Sbjct: 427 QEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSK 468



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 88/385 (22%), Positives = 162/385 (42%), Gaps = 18/385 (4%)

Query: 112 GKNCLFDAMWDAIKSMKKENVL-------------SLATFASVFSSYVVADRVKDAITTF 158
           G  C  + +   I  +KK++ +             SL  F+  FS+     +    +   
Sbjct: 52  GNVCFRERLRSGIVDIKKDDAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFC 111

Query: 159 DVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKE 217
             +E  G  H+++ LN +++  CR  KT  A+  L +V+    +PD  T+  L++G   E
Sbjct: 112 KQLELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLE 171

Query: 218 RDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGM 277
             V+ A      MV E G  PD V  Y+S +  + +  D     ++ L++M ER     +
Sbjct: 172 GKVSEAVVLVDRMV-ENGCQPD-VVTYNSIVNGICRSGDTSL-ALDLLRKMEERNVKADV 228

Query: 278 TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLD 337
             +    +       +  A  ++  M  + G +     YN ++   C + +      LL 
Sbjct: 229 FTYSTIIDSLCRDGCIDAAISLFKEMETK-GIKSSVVTYNSLVRGLCKAGKWNDGALLLK 287

Query: 338 EMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSD 397
           +MV     P++ T+N+L +  VK  KL EA+ L+ EM+      N       +  Y   +
Sbjct: 288 DMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQN 347

Query: 398 DPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALS 457
               A      M+ N CS    T   L+ G C +  + + +K  + ++++G+       S
Sbjct: 348 RLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYS 407

Query: 458 KLKQILIKARKEAVYEELLKKCKAH 482
            L Q   ++ K  + EEL ++  +H
Sbjct: 408 ILVQGFCQSGKIKLAEELFQEMVSH 432



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 57/244 (23%), Positives = 110/244 (45%), Gaps = 9/244 (3%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           ++ T+ ++   Y + +R+ +A    D+M +  C  D+    SL+   C   +  D  +  
Sbjct: 332 NIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVF 391

Query: 194 RVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
           R +  R +  +  TY+IL++G+ +   +  A++ F EMV   G  PD +    +Y I L 
Sbjct: 392 RNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSH-GVLPDVM----TYGILLD 446

Query: 253 KGCDG--IYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFR 310
             CD   + + +   + + +   + G+  +    E    G  +  A  ++ ++  + G +
Sbjct: 447 GLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCK-GVK 505

Query: 311 PDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGL 370
           P+   Y +MIS  C       A  LL +M  +G  P+  TYN L    ++   L  ++ L
Sbjct: 506 PNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKL 565

Query: 371 FNEM 374
             EM
Sbjct: 566 IEEM 569



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 50/233 (21%), Positives = 96/233 (41%), Gaps = 11/233 (4%)

Query: 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FL 193
           + TF S+   Y +  RV D +  F  + + G   +    + L+   C+ GK   A + F 
Sbjct: 368 IVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQ 427

Query: 194 RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMV---IEVGWDPDNVPAYDSYLIT 250
            +V   + PD  TY ILL+G      +  A + F ++    +++G     +  Y + +  
Sbjct: 428 EMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLG-----IVMYTTIIEG 482

Query: 251 LLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFR 310
           + KG   + +  N    +  +G  P +  + +         +L  A  +   M    G  
Sbjct: 483 MCKG-GKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKM-EEDGNA 540

Query: 311 PDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRK 363
           P+   YN +I  +    +  A+ KL++EM   G   D  +  ++ + L+   K
Sbjct: 541 PNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVIDMLLSAMK 593


>gi|15239018|ref|NP_196692.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174149|sp|Q9LFM6.1|PP375_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g11310, mitochondrial; Flags: Precursor
 gi|8953393|emb|CAB96666.1| putative protein [Arabidopsis thaliana]
 gi|110738090|dbj|BAF00978.1| hypothetical protein [Arabidopsis thaliana]
 gi|332004275|gb|AED91658.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 602

 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 105/428 (24%), Positives = 173/428 (40%), Gaps = 24/428 (5%)

Query: 38  TIKTLCEIIANTPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLND 97
           TI  L E     P  ++E  LD+T I  S E V  +     S P      F+W+  +   
Sbjct: 72  TISNLLENTDVVPGSSLESALDETGIEPSVELVHALFDRLSSSPMLLHSVFKWAEMKPGF 131

Query: 98  KHSPYAWNLVVDLLGKNCLFDAMW----DAIKSMKKENVLSLATFASVFSSYVVADRVKD 153
             SP  ++ VV+ L K   F+  W    D ++S +  N++S  TF  +   Y  A  V+ 
Sbjct: 132 TLSPSLFDSVVNSLCKAREFEIAWSLVFDRVRSDEGSNLVSADTFIVLIRRYARAGMVQQ 191

Query: 154 AITTFDVMEQYG--CKH--DVFALNSLLSAICRDGKTIDAWQFLRVVDGRIK----PDND 205
           AI  F+    Y   CK   ++  L  LL A+C++G   +A  +L  + G +     P   
Sbjct: 192 AIRAFEFARSYEPVCKSATELRLLEVLLDALCKEGHVREASMYLERIGGTMDSNWVPSVR 251

Query: 206 TYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG-CDGIYETVNS 264
            + ILL GW + R +  A+K + EM         NV        TL++G C      V  
Sbjct: 252 IFNILLNGWFRSRKLKQAEKLWEEM------KAMNVKPTVVTYGTLIEGYCR--MRRVQI 303

Query: 265 LKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGF---RPDTHMYNMMIS 321
              ++E      M    + F   + G    G       M+ R       P    YN ++ 
Sbjct: 304 AMEVLEEMKMAEMEINFMVFNPIIDGLGEAGRLSEALGMMERFFVCESGPTIVTYNSLVK 363

Query: 322 LYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVL 381
            +C + +   A K+L  M+  G  P   TYN  F++  K  K  E   L+ ++++  +  
Sbjct: 364 NFCKAGDLPGASKILKMMMTRGVDPTTTTYNHFFKYFSKHNKTEEGMNLYFKLIEAGHSP 423

Query: 382 NHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYA 441
           +       +++  +     +A++  K M          T  +L+  LC + ML EA +  
Sbjct: 424 DRLTYHLILKMLCEDGKLSLAMQVNKEMKNRGIDPDLLTTTMLIHLLCRLEMLEEAFEEF 483

Query: 442 KGMAEKGI 449
                +GI
Sbjct: 484 DNAVRRGI 491



 Score = 46.6 bits (109), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 50/238 (21%), Positives = 96/238 (40%), Gaps = 7/238 (2%)

Query: 118 DAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLL 177
           + +W+ +K+M  +   ++ T+ ++   Y    RV+ A+   + M+    + +    N ++
Sbjct: 270 EKLWEEMKAMNVKP--TVVTYGTLIEGYCRMRRVQIAMEVLEEMKMAEMEINFMVFNPII 327

Query: 178 SAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGW 236
             +   G+  +A   + R       P   TY  L++ + K  D+  A K   +M++  G 
Sbjct: 328 DGLGEAGRLSEALGMMERFFVCESGPTIVTYNSLVKNFCKAGDLPGASKIL-KMMMTRGV 386

Query: 237 DPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGA 296
           DP     Y+ +     K  +   E +N   +++E G +P    + L  +       L  A
Sbjct: 387 DPTTT-TYNHFFKYFSKH-NKTEEGMNLYFKLIEAGHSPDRLTYHLILKMLCEDGKLSLA 444

Query: 297 EFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNIL 354
             +   M  R G  PD     M+I L C       A +  D  V  G  P   T+ ++
Sbjct: 445 MQVNKEMKNR-GIDPDLLTTTMLIHLLCRLEMLEEAFEEFDNAVRRGIIPQYITFKMI 501


>gi|147801213|emb|CAN73209.1| hypothetical protein VITISV_002838 [Vitis vinifera]
          Length = 1024

 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 95/377 (25%), Positives = 161/377 (42%), Gaps = 29/377 (7%)

Query: 40  KTLCEIIANTP-SPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDK 98
           + +  +I   P S  ++  L +    +S+ TV Q L+   + P  A+ FFRW   +    
Sbjct: 160 QAMARLINTEPWSHELQSSLAELAPSLSKTTVLQTLQLIRT-PAKALHFFRWVEAK-GFT 217

Query: 99  HSPYAWNLVVDLLGKNCLFDAMWDAI----------------KSMKKENVL-SLATFASV 141
           H+  ++ L++++LG++   +A  + +                K+MK+  V  S+ TF S+
Sbjct: 218 HNEQSYFLMIEILGRSRNLNAARNFVFSIEKKSGGAESIKVFKTMKEIGVSPSVVTFNSL 277

Query: 142 FSSYVVADRVKDAITTFDVM-EQYGCKHDVFALNSLLSAICRDGKTIDA-WQFLRVVDGR 199
            S  +   R   A   FD M + YG   D +  N L+   C +    +  W F  +   +
Sbjct: 278 LSIVLKRGRTSMAKQLFDEMLDTYGVTPDTYTFNILIRGFCMNSMVDEGFWFFKEMSRFK 337

Query: 200 IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG-C--D 256
             PD  TY  L++G  +   V  A      MV +    P+  P   +Y  TL++G C   
Sbjct: 338 CDPDVVTYNTLVDGLCRAGKVKIAHNVVKGMVKK---SPNLSPNVVTY-TTLIRGYCMKQ 393

Query: 257 GIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMY 316
            + E ++ L  M+ RG  P    +    +     Q L   + I   MVG  GF PDT   
Sbjct: 394 DMAEALSLLAEMVSRGLKPNKITYNTLIQGLCEAQKLDKIKEILEGMVGDGGFIPDTCTL 453

Query: 317 NMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK 376
           N +I  +C   +   A  + ++M      PD  TY++L   L +      A   F+E+ +
Sbjct: 454 NTLIKAHCTMGKLEEAFSVFEKMSELRVQPDSATYSVLVRSLCQRGDFRRAEEFFDELAE 513

Query: 377 NENVLNHENCRAAVRVY 393
            E +L+   C+  V  Y
Sbjct: 514 KEILLHDVGCKPLVAAY 530



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 75/311 (24%), Positives = 131/311 (42%), Gaps = 37/311 (11%)

Query: 169 DVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTF 227
           D   LN+L+ A C  GK  +A+  F ++ + R++PD+ TY++L+    +  D   A++ F
Sbjct: 449 DTCTLNTLIKAHCTMGKLEEAFSVFEKMSELRVQPDSATYSVLVRSLCQRGDFRRAEEFF 508

Query: 228 GEM------VIEVGWDPDNVPAYD---SYLITLLKGCDGIYETVNSLKRMMERGCNPGMT 278
            E+      + +VG  P  V AY+    YL +   G     E V   +++M+RG     +
Sbjct: 509 DELAEKEILLHDVGCKP-LVAAYNPMFEYLCS--NGKTKKAERV--FRQLMKRGTQDPPS 563

Query: 279 FFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDE 338
           +  L    C  G    G + +   ++ R  F PD   Y +MI       +   A K L++
Sbjct: 564 YKTLILGHCREGTPEAGFDLL--VLMLRRDFVPDAETYGLMIDGLLKKGDPVLAHKSLEK 621

Query: 339 MVYNGAFPDIQTYNILFEFLVKGRK--------------LWEASGLFNEMVKNENVLNHE 384
           M+ +   P    ++ +   LV+  +              L   SGL ++      +L +E
Sbjct: 622 MLKSSHLPTTAIFHSILAALVEKERRIRQNIDLSTHTVRLLYKSGLQDKAFMTIGLL-YE 680

Query: 385 N-----CRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVK 439
           N         V     S     A K   + +E   S   +  + +++GLC  H + EA  
Sbjct: 681 NGYLVKMEELVSFLCQSRKLLEAQKMLLFSLEKRQSVDIDMCSTVISGLCKAHKVSEAFA 740

Query: 440 YAKGMAEKGIQ 450
               + EKG+Q
Sbjct: 741 LYYELVEKGMQ 751



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 96/413 (23%), Positives = 163/413 (39%), Gaps = 37/413 (8%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSM-KKENVLS--LATFASVFSSYVVADRVKDAITTFD 159
            +N +VD L +        + +K M KK   LS  + T+ ++   Y +   + +A++   
Sbjct: 344 TYNTLVDGLCRAGKVKIAHNVVKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMAEALSLLA 403

Query: 160 VMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR--VVDGRIKPDNDTYAILLEGWEKE 217
            M   G K +    N+L+  +C   K     + L   V DG   PD  T   L++     
Sbjct: 404 EMVSRGLKPNKITYNTLIQGLCEAQKLDKIKEILEGMVGDGGFIPDTCTLNTLIKAHCTM 463

Query: 218 RDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD--GIYETVNSLKR----MMER 271
             +  A   F +M  E+   PD+   Y   + +L +  D     E  + L      + + 
Sbjct: 464 GKLEEAFSVFEKMS-ELRVQPDSA-TYSVLVRSLCQRGDFRRAEEFFDELAEKEILLHDV 521

Query: 272 GCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGA 331
           GC P +  +   FE   +    + AE ++  ++ R    P +  Y  +I  +C      A
Sbjct: 522 GCKPLVAAYNPMFEYLCSNGKTKKAERVFRQLMKRGTQDPPS--YKTLILGHCREGTPEA 579

Query: 332 AMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENV----LNHENCR 387
              LL  M+     PD +TY ++ + L+K      A     +M+K+ ++    + H    
Sbjct: 580 GFDLLVLMLRRDFVPDAETYGLMIDGLLKKGDPVLAHKSLEKMLKSSHLPTTAIFHSILA 639

Query: 388 AAV----RVYMDSDDPYVAIK-FWKYMIENHC----SDLSETGNL-----LVAGLCDMHM 433
           A V    R+  + D     ++  +K  +++        L E G L     LV+ LC    
Sbjct: 640 ALVEKERRIRQNIDLSTHTVRLLYKSGLQDKAFMTIGLLYENGYLVKMEELVSFLCQSRK 699

Query: 434 LPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKE----AVYEELLKKCKAH 482
           L EA K      EK   V     S +   L KA K     A+Y EL++K   H
Sbjct: 700 LLEAQKMLLFSLEKRQSVDIDMCSTVISGLCKAHKVSEAFALYYELVEKGMQH 752


>gi|222422989|dbj|BAH19478.1| AT2G06000 [Arabidopsis thaliana]
          Length = 536

 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 105/438 (23%), Positives = 176/438 (40%), Gaps = 40/438 (9%)

Query: 72  QVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKEN 131
           +V+K   ++P    +F+ +S ++LN +HS + +NL+   L K  L D      + MK + 
Sbjct: 74  EVVKKLDNNPHIGFRFWEFSRFKLNIRHSFWTYNLLTRSLCKAGLHDLAGQMFECMKSDG 133

Query: 132 V--------LSLATFA--------------------------SVFSSYVVADRVKDAITT 157
           V          +++FA                          S+ ++ V  DRV+DA+  
Sbjct: 134 VSPNNRLLGFLVSSFAEKGKLHFATALLLQSFEVEGCCMVVNSLLNTLVKLDRVEDAMKL 193

Query: 158 FDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDG-RIKPDNDTYAILLEGWEK 216
           FD   ++   +D    N L+  +C  GK   A + L V+ G   +PD  TY  L++G+ K
Sbjct: 194 FDEHLRFQSCNDTKTFNILIRGLCGVGKAEKALELLGVMSGFGCEPDIVTYNTLIQGFCK 253

Query: 217 ERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPG 276
             ++  A + F ++       PD V  Y S +    K    + E  + L  M+  G  P 
Sbjct: 254 SNELNKASEMFKDVKSGSVCSPD-VVTYTSMISGYCKA-GKMREASSLLDDMLRLGIYPT 311

Query: 277 MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLL 336
              F +  +       +  AE I G M+   G  PD   +  +I  YC   +     +L 
Sbjct: 312 NVTFNVLVDGYAKAGEMLTAEEIRGKMIS-FGCFPDVVTFTSLIDGYCRVGQVSQGFRLW 370

Query: 337 DEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDS 396
           +EM   G FP+  TY+IL   L    +L +A  L  ++   + +         +  +  +
Sbjct: 371 EEMNARGMFPNAFTYSILINALCNENRLLKARELLGQLASKDIIPQPFMYNPVIDGFCKA 430

Query: 397 DDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFAL 456
                A    + M +  C     T  +L+ G C    + EAV     M   G       +
Sbjct: 431 GKVNEANVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSIFHKMVAIGCSPDKITV 490

Query: 457 SKLKQILIKA--RKEAVY 472
           S L   L+KA   KEA +
Sbjct: 491 SSLLSCLLKAGMAKEAYH 508


>gi|193806393|sp|P0C7Q7.1|PPR38_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial; Flags: Precursor
          Length = 602

 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 88/346 (25%), Positives = 154/346 (44%), Gaps = 12/346 (3%)

Query: 99  HSPYAWNLVVDLLGKNCLFDAMWDAI-KSMKKENVLSLATFASVFSSYVVADRVKDAITT 157
           H+ Y  N++++   + C     +  + K MK        TF ++     +  +V +A+  
Sbjct: 121 HNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVL 180

Query: 158 FDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEK 216
            D M + GC+ DV   NS+++ ICR G T  A   LR ++ R +K D  TY+ +++   +
Sbjct: 181 VDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCR 240

Query: 217 ERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC---DGIYETVNSLKRMMERGC 273
           +  +  A   F EM  E      +V  Y+S +  L K     DG       LK M+ R  
Sbjct: 241 DGCIDAAISLFKEM--ETKGIKSSVVTYNSLVRGLCKAGKWNDGAL----LLKDMVSREI 294

Query: 274 NPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAM 333
            P +  F +  +  +    L+ A  ++  M+ R G  P+   YN ++  YC  N    A 
Sbjct: 295 VPNVITFNVLLDVFVKEGKLQEANELYKEMITR-GISPNIITYNTLMDGYCMQNRLSEAN 353

Query: 334 KLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVY 393
            +LD MV N   PDI T+  L +     +++ +   +F  + K   V N       V+ +
Sbjct: 354 NMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGF 413

Query: 394 MDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVK 439
             S    +A + ++ M+ +       T  +L+ GLCD   L +A++
Sbjct: 414 CQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALE 459



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 74/264 (28%), Positives = 130/264 (49%), Gaps = 14/264 (5%)

Query: 121 WDAIKSMKKENVLS-LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSA 179
            D ++ M++ NV + + T++++  S      +  AI+ F  ME  G K  V   NSL+  
Sbjct: 213 LDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRG 272

Query: 180 ICRDGKTIDAWQFLR-VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDP 238
           +C+ GK  D    L+ +V   I P+  T+ +LL+ + KE  +  A + + EM+   G  P
Sbjct: 273 LCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITR-GISP 331

Query: 239 DNVPAYDSYLITLLKG-C--DGIYETVNSLKRMMERGCNPGM-TFFKLAFEECLTGQNLR 294
            N+  Y+    TL+ G C  + + E  N L  M+   C+P + TF  L    C+  +   
Sbjct: 332 -NIITYN----TLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDD 386

Query: 295 GAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNIL 354
           G +      + + G   +   Y++++  +C S +   A +L  EMV +G  PD+ TY IL
Sbjct: 387 GMKVFRN--ISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGIL 444

Query: 355 FEFLVKGRKLWEASGLFNEMVKNE 378
            + L    KL +A  +F ++ K++
Sbjct: 445 LDGLCDNGKLEKALEIFEDLQKSK 468



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 88/385 (22%), Positives = 162/385 (42%), Gaps = 18/385 (4%)

Query: 112 GKNCLFDAMWDAIKSMKKENVL-------------SLATFASVFSSYVVADRVKDAITTF 158
           G  C  + +   I  +KK++ +             SL  F+  FS+     +    +   
Sbjct: 52  GNVCFRERLRSGIVDIKKDDAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFC 111

Query: 159 DVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKE 217
             +E  G  H+++ LN +++  CR  KT  A+  L +V+    +PD  T+  L++G   E
Sbjct: 112 KQLELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLE 171

Query: 218 RDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGM 277
             V+ A      MV E G  PD V  Y+S +  + +  D     ++ L++M ER     +
Sbjct: 172 GKVSEAVVLVDRMV-ENGCQPD-VVTYNSIVNGICRSGDTSL-ALDLLRKMEERNVKADV 228

Query: 278 TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLD 337
             +    +       +  A  ++  M  + G +     YN ++   C + +      LL 
Sbjct: 229 FTYSTIIDSLCRDGCIDAAISLFKEMETK-GIKSSVVTYNSLVRGLCKAGKWNDGALLLK 287

Query: 338 EMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSD 397
           +MV     P++ T+N+L +  VK  KL EA+ L+ EM+      N       +  Y   +
Sbjct: 288 DMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQN 347

Query: 398 DPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALS 457
               A      M+ N CS    T   L+ G C +  + + +K  + ++++G+       S
Sbjct: 348 RLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYS 407

Query: 458 KLKQILIKARKEAVYEELLKKCKAH 482
            L Q   ++ K  + EEL ++  +H
Sbjct: 408 ILVQGFCQSGKIKLAEELFQEMVSH 432



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 57/244 (23%), Positives = 110/244 (45%), Gaps = 9/244 (3%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           ++ T+ ++   Y + +R+ +A    D+M +  C  D+    SL+   C   +  D  +  
Sbjct: 332 NIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVF 391

Query: 194 RVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
           R +  R +  +  TY+IL++G+ +   +  A++ F EMV   G  PD +    +Y I L 
Sbjct: 392 RNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSH-GVLPDVM----TYGILLD 446

Query: 253 KGCDG--IYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFR 310
             CD   + + +   + + +   + G+  +    E    G  +  A  ++ ++  + G +
Sbjct: 447 GLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCK-GVK 505

Query: 311 PDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGL 370
           P+   Y +MIS  C       A  LL +M  +G  P+  TYN L    ++   L  ++ L
Sbjct: 506 PNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKL 565

Query: 371 FNEM 374
             EM
Sbjct: 566 IEEM 569



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 50/231 (21%), Positives = 96/231 (41%), Gaps = 11/231 (4%)

Query: 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FL 193
           + TF S+   Y +  RV D +  F  + + G   +    + L+   C+ GK   A + F 
Sbjct: 368 IVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQ 427

Query: 194 RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMV---IEVGWDPDNVPAYDSYLIT 250
            +V   + PD  TY ILL+G      +  A + F ++    +++G     +  Y + +  
Sbjct: 428 EMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLG-----IVMYTTIIEG 482

Query: 251 LLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFR 310
           + KG   + +  N    +  +G  P +  + +         +L  A  +   M    G  
Sbjct: 483 MCKG-GKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKM-EEDGNA 540

Query: 311 PDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKG 361
           P+   YN +I  +    +  A+ KL++EM   G   D  +  ++ + L+ G
Sbjct: 541 PNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVIDMLLSG 591


>gi|356524104|ref|XP_003530672.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Glycine max]
          Length = 742

 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 96/388 (24%), Positives = 164/388 (42%), Gaps = 8/388 (2%)

Query: 98  KHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAIT 156
           K + Y +N ++  L K          ++ MK + +      + ++ S +  +  V     
Sbjct: 319 KPNQYTYNSIISFLCKTGRVVEAEQVLRVMKNQRIFPDNVVYTTLISGFGKSGNVSVEYK 378

Query: 157 TFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWE 215
            FD M++     D     S++  +C+ GK ++A + F  ++   +KPD  TY  L++G+ 
Sbjct: 379 LFDEMKRKKIVPDFVTYTSMIHGLCQAGKVVEARKLFSEMLSKGLKPDEVTYTALIDGYC 438

Query: 216 KERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNP 275
           K  ++  A     +MV E G  P NV  Y + +  L K C  +      L  M E+G  P
Sbjct: 439 KAGEMKEAFSLHNQMV-EKGLTP-NVVTYTALVDGLCK-CGEVDIANELLHEMSEKGLQP 495

Query: 276 GM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMK 334
            + T+  L    C  G N+  A  +   M    GF PDT  Y  ++  YC   E   A +
Sbjct: 496 NVCTYNALINGLCKVG-NIEQAVKLMEEM-DLAGFFPDTITYTTIMDAYCKMGEMAKAHE 553

Query: 335 LLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYM 394
           LL  M+  G  P I T+N+L         L +   L   M+    + N     + ++ Y 
Sbjct: 554 LLRIMLDKGLQPTIVTFNVLMNGFCMSGMLEDGERLIKWMLDKGIMPNATTFNSLMKQYC 613

Query: 395 DSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPF 454
             ++    I+ +K M        + T N+L+ G C    + EA    K M EKG  +T  
Sbjct: 614 IRNNMRATIEIYKGMHAQGVVPDTNTYNILIKGHCKARNMKEAWFLHKEMVEKGFSLTAA 673

Query: 455 ALSKLKQILIKARKEAVYEELLKKCKAH 482
           + + L +   K +K     +L ++ + H
Sbjct: 674 SYNSLIKGFYKRKKFEEARKLFEEMRTH 701



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 95/381 (24%), Positives = 167/381 (43%), Gaps = 21/381 (5%)

Query: 103 AWNLVVDLLGKNCLFDAMWDA----IKSMKKENVLSLATFASVFSSYVVADRVKDAITTF 158
           ++N+++ LL   C    + +A    I+   + NV  + +++ +   Y   +++   +   
Sbjct: 254 SYNIILHLL---CQLGKVKEAHSLLIQMEFRGNVPDVVSYSVIVDGYCQVEQLGKVLKLM 310

Query: 159 DVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV-DGRIKPDNDTYAILLEGWEKE 217
           + +++ G K + +  NS++S +C+ G+ ++A Q LRV+ + RI PDN  Y  L+ G+ K 
Sbjct: 311 EELQRKGLKPNQYTYNSIISFLCKTGRVVEAEQVLRVMKNQRIFPDNVVYTTLISGFGKS 370

Query: 218 RDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDG--IYETVNSLKRMMERGCNP 275
            +V+   K F EM          VP + +Y   +   C    + E       M+ +G  P
Sbjct: 371 GNVSVEYKLFDEMK-----RKKIVPDFVTYTSMIHGLCQAGKVVEARKLFSEMLSKGLKP 425

Query: 276 G-MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMK 334
             +T+  L    C  G+ ++ A  +   MV + G  P+   Y  ++   C   E   A +
Sbjct: 426 DEVTYTALIDGYCKAGE-MKEAFSLHNQMVEK-GLTPNVVTYTALVDGLCKCGEVDIANE 483

Query: 335 LLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYM 394
           LL EM   G  P++ TYN L   L K   + +A  L  EM       +       +  Y 
Sbjct: 484 LLHEMSEKGLQPNVCTYNALINGLCKVGNIEQAVKLMEEMDLAGFFPDTITYTTIMDAYC 543

Query: 395 DSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI--QVT 452
              +   A +  + M++        T N+L+ G C   ML +  +  K M +KGI    T
Sbjct: 544 KMGEMAKAHELLRIMLDKGLQPTIVTFNVLMNGFCMSGMLEDGERLIKWMLDKGIMPNAT 603

Query: 453 PFALSKLKQILIKARKEAVYE 473
            F  S +KQ  I+    A  E
Sbjct: 604 TFN-SLMKQYCIRNNMRATIE 623



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 90/374 (24%), Positives = 150/374 (40%), Gaps = 20/374 (5%)

Query: 110 LLGKNCLFDAM--WDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCK 167
           LL    LFD +  +  + S+   N L LA  ++ F      D ++ A   F    + G  
Sbjct: 197 LLEAGKLFDKLLNYGVLVSVDSCN-LFLARLSNSF------DGIRTAFRVFREYSEVGVC 249

Query: 168 HDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIK-PDNDTYAILLEGWEKERDVANAKKT 226
            +  + N +L  +C+ GK  +A   L  ++ R   PD  +Y+++++G+ +   +    K 
Sbjct: 250 WNTVSYNIILHLLCQLGKVKEAHSLLIQMEFRGNVPDVVSYSVIVDGYCQVEQLGKVLKL 309

Query: 227 FGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEE 286
             E+  + G  P N   Y+S +I+ L     + E    L+ M  +   P      + +  
Sbjct: 310 MEELQRK-GLKP-NQYTYNS-IISFLCKTGRVVEAEQVLRVMKNQRIFPD----NVVYTT 362

Query: 287 CLTGQNLRG---AEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNG 343
            ++G    G    E+     + R    PD   Y  MI   C + +   A KL  EM+  G
Sbjct: 363 LISGFGKSGNVSVEYKLFDEMKRKKIVPDFVTYTSMIHGLCQAGKVVEARKLFSEMLSKG 422

Query: 344 AFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAI 403
             PD  TY  L +   K  ++ EA  L N+MV+     N     A V       +  +A 
Sbjct: 423 LKPDEVTYTALIDGYCKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGLCKCGEVDIAN 482

Query: 404 KFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQIL 463
           +    M E        T N L+ GLC +  + +AVK  + M   G        + +    
Sbjct: 483 ELLHEMSEKGLQPNVCTYNALINGLCKVGNIEQAVKLMEEMDLAGFFPDTITYTTIMDAY 542

Query: 464 IKARKEAVYEELLK 477
            K  + A   ELL+
Sbjct: 543 CKMGEMAKAHELLR 556



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/226 (19%), Positives = 100/226 (44%), Gaps = 9/226 (3%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           ++ T+ ++ +       ++ A+   + M+  G   D     +++ A C+ G+   A + L
Sbjct: 496 NVCTYNALINGLCKVGNIEQAVKLMEEMDLAGFFPDTITYTTIMDAYCKMGEMAKAHELL 555

Query: 194 RV-VDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
           R+ +D  ++P   T+ +L+ G+     + +     GE +I+   D   +P   ++   + 
Sbjct: 556 RIMLDKGLQPTIVTFNVLMNGFCMSGMLED-----GERLIKWMLDKGIMPNATTFNSLMK 610

Query: 253 KGC--DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFR 310
           + C  + +  T+   K M  +G  P    + +  +     +N++ A F+   MV + GF 
Sbjct: 611 QYCIRNNMRATIEIYKGMHAQGVVPDTNTYNILIKGHCKARNMKEAWFLHKEMVEK-GFS 669

Query: 311 PDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFE 356
                YN +I  +    +   A KL +EM  +G   + + Y+I  +
Sbjct: 670 LTAASYNSLIKGFYKRKKFEEARKLFEEMRTHGFIAEKEIYDIFVD 715


>gi|242056423|ref|XP_002457357.1| hypothetical protein SORBIDRAFT_03g005950 [Sorghum bicolor]
 gi|241929332|gb|EES02477.1| hypothetical protein SORBIDRAFT_03g005950 [Sorghum bicolor]
          Length = 543

 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 92/416 (22%), Positives = 176/416 (42%), Gaps = 15/416 (3%)

Query: 54  VEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGK 113
           + D L +  + + ++ +  VL+   S+   A+ FF W+A      H   A+  ++D+LG+
Sbjct: 105 LSDALRRFAVHMDEDIILTVLQKQRSNWQVALAFFNWAATLPGYAHGSRAYTEMLDILGR 164

Query: 114 NCLFDAM---WDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDV 170
                 M   +D I   ++  V++   FA + + Y  A +V++AI  F + + YG + D+
Sbjct: 165 MKKVRHMRQLFDEIPEERRVVVVTNKMFAVLLNRYAGAHKVQEAIEVFYLRKDYGFELDL 224

Query: 171 FALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEM 230
                LL ++CR     +A    R           ++ I+L GW  +  + +A++ + ++
Sbjct: 225 VGFQILLMSLCRYKHVEEAEALFREKKDEFPHVTKSWNIILNGWCVKGSLRDAQRIWNDI 284

Query: 231 VIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTG 290
           +        ++  Y +++  L K    I   V   K+M E G NP +       ++    
Sbjct: 285 I--ASKVERDLFTYGTFINALAKN-GRISAAVKLFKKMWETGINPDVAICNCIIDQLCFK 341

Query: 291 QNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQT 350
             +  A  I+G M  R+  + D   YN +I   C         +LLD+M   G  P+ +T
Sbjct: 342 NRIPEALEIFGEMNDRL-CQADVATYNTLIKYLCKKKRMEKVYELLDDMEAKGCSPNNRT 400

Query: 351 YNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMI 410
           Y+ + +   K +   +   L   M +    L+ +     + +Y +        + W  M 
Sbjct: 401 YSYVLKTTEKPK---DVIALMQRMEQTGCELDSDTYNLILNLYTNWKYEKGVQQVWDEME 457

Query: 411 ENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKA 466
            N       +  ++V GL     L EA++Y   M  +G+   P       +IL+KA
Sbjct: 458 RNGSGPDQRSFTIMVHGLHSQGKLDEALQYYTTMKSRGMIPEPRT-----KILVKA 508


>gi|15225031|ref|NP_178657.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|42570711|ref|NP_973429.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216767|sp|Q9ZUE9.1|PP149_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g06000
 gi|4006835|gb|AAC95177.1| hypothetical protein [Arabidopsis thaliana]
 gi|110736272|dbj|BAF00106.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250896|gb|AEC05990.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|330250897|gb|AEC05991.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 536

 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 105/438 (23%), Positives = 176/438 (40%), Gaps = 40/438 (9%)

Query: 72  QVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKEN 131
           +V+K   ++P    +F+ +S ++LN +HS + +NL+   L K  L D      + MK + 
Sbjct: 74  EVVKKLDNNPHIGFRFWEFSRFKLNIRHSFWTYNLLTRSLCKAGLHDLAGQMFECMKSDG 133

Query: 132 V--------LSLATFA--------------------------SVFSSYVVADRVKDAITT 157
           V          +++FA                          S+ ++ V  DRV+DA+  
Sbjct: 134 VSPNNRLLGFLVSSFAEKGKLHFATALLLQSFEVEGCCMVVNSLLNTLVKLDRVEDAMKL 193

Query: 158 FDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDG-RIKPDNDTYAILLEGWEK 216
           FD   ++   +D    N L+  +C  GK   A + L V+ G   +PD  TY  L++G+ K
Sbjct: 194 FDEHLRFQSCNDTKTFNILIRGLCGVGKAEKALELLGVMSGFGCEPDIVTYNTLIQGFCK 253

Query: 217 ERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPG 276
             ++  A + F ++       PD V  Y S +    K    + E  + L  M+  G  P 
Sbjct: 254 SNELNKASEMFKDVKSGSVCSPD-VVTYTSMISGYCKA-GKMREASSLLDDMLRLGIYPT 311

Query: 277 MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLL 336
              F +  +       +  AE I G M+   G  PD   +  +I  YC   +     +L 
Sbjct: 312 NVTFNVLVDGYAKAGEMLTAEEIRGKMIS-FGCFPDVVTFTSLIDGYCRVGQVSQGFRLW 370

Query: 337 DEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDS 396
           +EM   G FP+  TY+IL   L    +L +A  L  ++   + +         +  +  +
Sbjct: 371 EEMNARGMFPNAFTYSILINALCNENRLLKARELLGQLASKDIIPQPFMYNPVIDGFCKA 430

Query: 397 DDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFAL 456
                A    + M +  C     T  +L+ G C    + EAV     M   G       +
Sbjct: 431 GKVNEANVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSIFHKMVAIGCSPDKITV 490

Query: 457 SKLKQILIKA--RKEAVY 472
           S L   L+KA   KEA +
Sbjct: 491 SSLLSCLLKAGMAKEAYH 508


>gi|357438845|ref|XP_003589699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478747|gb|AES59950.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 806

 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 102/462 (22%), Positives = 190/462 (41%), Gaps = 51/462 (11%)

Query: 45  IIANTPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAW 104
           ++A  P+P   + L+  +  VS+  V +VL+  +     ++++F+  +     KH+   +
Sbjct: 21  VLATNPNPEKANSLN--VCPVSESHVVKVLRQEHDIVS-SLEYFKSLSNSGTFKHTHLTY 77

Query: 105 NLVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASVFSSYVVADRVKDAITTFDVMEQ 163
             ++D LG+N   D +   ++ MK ENV  S   F  V   Y  ++  +  +  F  + +
Sbjct: 78  ETMIDKLGRNNEMDGVSYLLQQMKLENVPCSQELFQFVIKCYRRSNLGEQGLKMFYRIRE 137

Query: 164 YGCKH-----------------------------------DVFALNSLLSAICRDGKTID 188
           +GC+                                    +VF  N LL A+C++GK   
Sbjct: 138 FGCEPSVKIYNLVLDALLSQNLFKMINALYNNMKSEGLEPNVFTYNVLLKALCQNGKVDG 197

Query: 189 AWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSY 247
           A + L  +  +   PD+ +Y  ++    K  DV  A++      + + ++P  VP Y++ 
Sbjct: 198 ACKLLVEMSNKGCDPDDVSYTTVISSMCKLGDVDKARE------LAMKFEPV-VPVYNAL 250

Query: 248 LITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQ-NLRGAEFIWGAMVGR 306
           +  + K C    E  + +  M++RG +P +  +      CL+   N+  +  ++G M  R
Sbjct: 251 IHGVCKECR-FKEAFDLMNEMVDRGVDPNVISYSTVIS-CLSDMGNVELSLAVFGRMFVR 308

Query: 307 IGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWE 366
            G RP+   +  +I  +      G A+ L + M+  G  P++  YN L   L     + E
Sbjct: 309 -GCRPNVQTFTSLIKGFFVRGRVGDAVGLWNLMIREGVSPNVVAYNTLIHGLCSDGNMDE 367

Query: 367 ASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVA 426
           A  ++N+M K+    N       +  +  S D   A + W  MI   C         +V 
Sbjct: 368 AISVWNQMEKDSIRPNVTTYSTIIYGFAKSGDLVSACETWNKMINCGCRPNVVVYTCMVD 427

Query: 427 GLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARK 468
            LC M M  +A      M   G   T    +   + L +A +
Sbjct: 428 VLCQMSMFDQAFDLIDNMISDGCPPTVITFNNFIKGLCRAGR 469



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 63/244 (25%), Positives = 105/244 (43%), Gaps = 44/244 (18%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDG---KTIDAW 190
           ++ TF S+   + V  RV DA+  +++M + G   +V A N+L+  +C DG   + I  W
Sbjct: 313 NVQTFTSLIKGFFVRGRVGDAVGLWNLMIREGVSPNVVAYNTLIHGLCSDGNMDEAISVW 372

Query: 191 QFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLIT 250
              ++    I+P+  TY+ ++ G+ K  D+ +A +T+ +M I  G  P NV  Y   +  
Sbjct: 373 N--QMEKDSIRPNVTTYSTIIYGFAKSGDLVSACETWNKM-INCGCRP-NVVVYTCMVDV 428

Query: 251 LLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFR 310
           L +                       M+ F  AF+             +   M+   G  
Sbjct: 429 LCQ-----------------------MSMFDQAFD-------------LIDNMISD-GCP 451

Query: 311 PDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGL 370
           P    +N  I   C +     AM +LD+M      P+I+TYN L + L +     EA GL
Sbjct: 452 PTVITFNNFIKGLCRAGRVEWAMNVLDQMEKYECLPNIRTYNELLDGLFRANAFREACGL 511

Query: 371 FNEM 374
             E+
Sbjct: 512 IREL 515



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/246 (23%), Positives = 106/246 (43%), Gaps = 14/246 (5%)

Query: 150 RVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKT-IDAWQFLRVVDGRIKPDNDTYA 208
           R K+A    + M   G   +V + ++++S +   G   +    F R+     +P+  T+ 
Sbjct: 259 RFKEAFDLMNEMVDRGVDPNVISYSTVISCLSDMGNVELSLAVFGRMFVRGCRPNVQTFT 318

Query: 209 ILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRM 268
            L++G+     V +A   +  M+ E G  P NV AY++ +  L    DG  +   S+   
Sbjct: 319 SLIKGFFVRGRVGDAVGLWNLMIRE-GVSP-NVVAYNTLIHGLCS--DGNMDEAISVWNQ 374

Query: 269 MER-GCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSN 327
           ME+    P +T +           +L  A   W  M+   G RP+  +Y  M+ + C  +
Sbjct: 375 MEKDSIRPNVTTYSTIIYGFAKSGDLVSACETWNKMIN-CGCRPNVVVYTCMVDVLCQMS 433

Query: 328 ETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCR 387
               A  L+D M+ +G  P + T+N   + L +  ++  A  + ++M K E       C 
Sbjct: 434 MFDQAFDLIDNMISDGCPPTVITFNNFIKGLCRAGRVEWAMNVLDQMEKYE-------CL 486

Query: 388 AAVRVY 393
             +R Y
Sbjct: 487 PNIRTY 492



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 56/254 (22%), Positives = 103/254 (40%), Gaps = 40/254 (15%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVM 161
            +  +VD+L +  +FD  +D I +M  +    ++ TF +       A RV+ A+   D M
Sbjct: 421 VYTCMVDVLCQMSMFDQAFDLIDNMISDGCPPTVITFNNFIKGLCRAGRVEWAMNVLDQM 480

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDV 220
           E+Y C  ++   N LL  + R     +A   +R ++ R ++ D  TY  ++ G+      
Sbjct: 481 EKYECLPNIRTYNELLDGLFRANAFREACGLIRELEERKVEFDCVTYNTIMYGFSFNGMH 540

Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFF 280
               +  G+M++  G   D +                +  TVN+                
Sbjct: 541 QQVLQLLGKMLVN-GIKLDTIT---------------VNTTVNAY--------------- 569

Query: 281 KLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMV 340
                 C  G+ ++ A  +   +     FR D   + +++   C    T  A+  L EM+
Sbjct: 570 ------CKLGK-VKTAIKVLDNISAEKEFRADIITHTIILWGICNWLGTEEAVVYLHEML 622

Query: 341 YNGAFPDIQTYNIL 354
             G FP+I T+N+L
Sbjct: 623 KRGIFPNIATWNVL 636


>gi|297745567|emb|CBI40732.3| unnamed protein product [Vitis vinifera]
          Length = 520

 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 99/434 (22%), Positives = 173/434 (39%), Gaps = 20/434 (4%)

Query: 53  TVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLG 112
            +E  L    I ++ + V +V+          V FF W+  Q         +N+++  LG
Sbjct: 77  AIELALTNVGIDLTIDIVSEVINRGNLGGEAMVIFFNWAVKQPTIPKDVDTYNVIIKALG 136

Query: 113 KNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVF 171
           +    + +   +K M  + +  +  T + V  S++ A +V  AI  F  +E++G K D  
Sbjct: 137 RRKFIEFVVKVLKDMHIQGISPNYETLSIVMDSFIKARQVSKAIEMFRNLEEFGGKCDTE 196

Query: 172 ALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMV 231
           +LN LL  +C+      A  F   + G I  +  TY I++ GW K   +   ++    MV
Sbjct: 197 SLNVLLQCLCQRSHVGAANLFFNAMKGGIPFNCMTYNIIIGGWSKYGKIGEMERCLKAMV 256

Query: 232 IEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQ 291
            + G+ P+ +    S+LI  L     I + V     M E GC P    +       ++ +
Sbjct: 257 AD-GFSPNCLTF--SHLIEGLGRAGRIDDAVEVFHHMEETGCVPNACVYNALISNFISTR 313

Query: 292 NLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTY 351
           +       +  MV      P+   Y  +I  +  + +   A+++LDEMV  G  P     
Sbjct: 314 DFDECLKYYNFMVSS-NCDPNMDTYTKLIVAFLKARKVADALEMLDEMVGRGMIPTTGAI 372

Query: 352 NILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVY-------MDSDDPYVAIK 404
               E L +      A  ++ +  K         CR ++  Y              + + 
Sbjct: 373 TSFIEPLCQYGPPHAAMMIYKKARK-------VGCRISLSAYKLLLMRLSRFGKCGMLLN 425

Query: 405 FWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILI 464
            W  M E+  S  +E    ++ GLC++  L  AV   +    KG   +    SKL   L+
Sbjct: 426 LWDEMQESGYSSDTEVYEYVINGLCNIGQLDTAVLVMEESLHKGFCPSRLIRSKLNNKLL 485

Query: 465 KARK-EAVYEELLK 477
            + K E  Y+  LK
Sbjct: 486 ASNKVEMAYKLFLK 499


>gi|302774715|ref|XP_002970774.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
 gi|300161485|gb|EFJ28100.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
          Length = 497

 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 89/356 (25%), Positives = 150/356 (42%), Gaps = 21/356 (5%)

Query: 98  KHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITT 157
            H   ++N++V  L +    +   +  + M      ++ T++ +      A+RV  A+  
Sbjct: 76  SHDVISFNILVTGLCRAGKIETALEFFRKMDDRCSPNVITYSVLIDGLCKANRVSQAVEL 135

Query: 158 FDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYAILLEGWEK 216
            + M+  GC  DV     L+  +C++ K   AW+ LR ++D    P+  TY  LL G  +
Sbjct: 136 LESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCR 195

Query: 217 ERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPG 276
            R V++A     +M    G  P NV  Y + +  L K    + +    L  M+++G  P 
Sbjct: 196 ARRVSDALALMRDMTCR-GCTP-NVVTYGTLIDGLCK-VGRVKDACAMLADMIDKGGTPD 252

Query: 277 MTFFKLAFEE-CLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKL 335
           +  + +     C   Q       +  A+ G  G +PD   Y+ +I   C SN    A +L
Sbjct: 253 LMIYNMLINGLCKADQVDESIALLRRAVSG--GIKPDVVTYSSVIYGLCRSNRLDEACRL 310

Query: 336 LDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMD 395
           L  +   G  PD+  Y+ L + L K  K+ EA  L+        V+  + C A V  Y  
Sbjct: 311 LLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLY-------EVMTGDGCDADVVTYST 363

Query: 396 SDDPYV-------AIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGM 444
             D          A      M+       + T N L+ GLCD++ L EA++  + M
Sbjct: 364 LIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEM 419



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 94/390 (24%), Positives = 174/390 (44%), Gaps = 15/390 (3%)

Query: 84  AVKFFRWSAYQLNDKHSP--YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFAS 140
           A++FFR    +++D+ SP    +++++D L K        + ++SMK       + T+  
Sbjct: 98  ALEFFR----KMDDRCSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTI 153

Query: 141 VFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR- 199
           +        +V  A      M   GC  ++   NSLL  +CR  +  DA   +R +  R 
Sbjct: 154 LVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRG 213

Query: 200 IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIY 259
             P+  TY  L++G  K   V +A     +M I+ G  PD +  Y+  +  L K  D + 
Sbjct: 214 CTPNVVTYGTLIDGLCKVGRVKDACAMLADM-IDKGGTPD-LMIYNMLINGLCKA-DQVD 270

Query: 260 ETVNSLKRMMERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNM 318
           E++  L+R +  G  P + T+  + +  C + +       +    V   G  PD  +Y+ 
Sbjct: 271 ESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLL--YVKSRGCPPDVILYST 328

Query: 319 MISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNE 378
           +I   C + +   A  L + M  +G   D+ TY+ L + L K  ++ EA  L   MV+  
Sbjct: 329 LIDGLCKAGKVDEAFDLYEVMTGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMG 388

Query: 379 NVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHML-PEA 437
              +     + ++   D +    AI+  + M  ++C+  + T N+L+ G+C M  +   A
Sbjct: 389 TPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAPSAVTYNILIHGMCRMERVDSAA 448

Query: 438 VKYAKGMAEKGIQVTPFALSKLKQILIKAR 467
           + Y + M + G+       S L + L K++
Sbjct: 449 LDYFQEMIDNGVIPDHITYSILLEGLKKSK 478



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 70/302 (23%), Positives = 125/302 (41%), Gaps = 29/302 (9%)

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERD 219
           M  +GC+ +V   NSL+  +C++ +   A + F  +      P   TY  LL+G  +   
Sbjct: 1   MRDHGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGK 60

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTF 279
           +  A   F EM+     D   V +++  +  L +   G  ET     R M+  C+P +  
Sbjct: 61  LERAMALFQEMLDRRSHD---VISFNILVTGLCRA--GKIETALEFFRKMDDRCSPNVIT 115

Query: 280 FKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEM 339
           + +  +       +  A  +  +M  R G  PD   Y +++   C  ++  AA ++L EM
Sbjct: 116 YSVLIDGLCKANRVSQAVELLESMKAR-GCSPDVITYTILVDGLCKESKVAAAWEVLREM 174

Query: 340 VYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDP 399
           +  G  P++ TYN L   L + R++ +A  L  +M           C   V  Y    D 
Sbjct: 175 LDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDM-------TCRGCTPNVVTYGTLIDG 227

Query: 400 YVAIKFWKYMIENHC---SDLSETG--------NLLVAGLCDMHMLPEAVKYAKGMAEKG 448
              +   K    + C   +D+ + G        N+L+ GLC    + E++   +     G
Sbjct: 228 LCKVGRVK----DACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGG 283

Query: 449 IQ 450
           I+
Sbjct: 284 IK 285



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 77/348 (22%), Positives = 127/348 (36%), Gaps = 78/348 (22%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVM 161
            + ++VD L K     A W+ ++ M     + +L T+ S+      A RV DA+     M
Sbjct: 150 TYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDM 209

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQFL---------------------------- 193
              GC  +V    +L+  +C+ G+  DA   L                            
Sbjct: 210 TCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQV 269

Query: 194 --------RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYD 245
                   R V G IKPD  TY+ ++ G  +   +  A +    + ++    P +V  Y 
Sbjct: 270 DESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLL--LYVKSRGCPPDVILYS 327

Query: 246 SYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVG 305
           + +  L K    + E  +  + M   GC+  +  +    +       +  A  +   MV 
Sbjct: 328 TLIDGLCKA-GKVDEAFDLYEVMTGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMV- 385

Query: 306 RIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEM-------------------------- 339
           R+G  P T  YN +I   C  N    A++L++EM                          
Sbjct: 386 RMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAPSAVTYNILIHGMCRMERVD 445

Query: 340 ----------VYNGAFPDIQTYNILFEFLVKGRKLWEASGL-FNEMVK 376
                     + NG  PD  TY+IL E L K + L E   L  ++MV+
Sbjct: 446 SAALDYFQEMIDNGVIPDHITYSILLEGLKKSKDLHELRHLVLDQMVQ 493



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 79/178 (44%), Gaps = 16/178 (8%)

Query: 308 GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEA 367
           G  P+   YN +I   C +NE   A +L + M      P + TYN L + L +  KL  A
Sbjct: 5   GCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERA 64

Query: 368 SGLFNEMVKNE-------NVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSET 420
             LF EM+          N+L    CRA             A++F++ M ++ CS    T
Sbjct: 65  MALFQEMLDRRSHDVISFNILVTGLCRAG--------KIETALEFFRKM-DDRCSPNVIT 115

Query: 421 GNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKK 478
            ++L+ GLC  + + +AV+  + M  +G        + L   L K  K A   E+L++
Sbjct: 116 YSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLRE 173



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 54/107 (50%), Gaps = 6/107 (5%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICR----DGKTIDA 189
           S  T+ S+       + + +AI   + ME+  C       N L+  +CR    D   +D 
Sbjct: 392 STMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAPSAVTYNILIHGMCRMERVDSAALDY 451

Query: 190 WQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGW 236
           +Q   ++D  + PD+ TY+ILLEG +K +D+   +    + ++++G+
Sbjct: 452 FQ--EMIDNGVIPDHITYSILLEGLKKSKDLHELRHLVLDQMVQLGY 496


>gi|15242557|ref|NP_195906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75181167|sp|Q9LYZ9.1|PP362_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g02860
 gi|7413561|emb|CAB86040.1| putative protein [Arabidopsis thaliana]
 gi|332003145|gb|AED90528.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 819

 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 84/337 (24%), Positives = 148/337 (43%), Gaps = 6/337 (1%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKEN-VLSLATFASVFSSYVVADRVKDAITTFDVM 161
            WN ++ + G+N +   +    K MK+   V    TF ++ S+Y      + A+T +  M
Sbjct: 456 TWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRM 515

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERDV 220
              G   D+   N++L+A+ R G    + + L  + DGR KP+  TY  LL  +   +++
Sbjct: 516 LDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYANGKEI 575

Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFF 280
                +  E V     +P  V      L+ +   CD + E   +   + ERG +P +T  
Sbjct: 576 G-LMHSLAEEVYSGVIEPRAVLL--KTLVLVCSKCDLLPEAERAFSELKERGFSPDITTL 632

Query: 281 KLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMV 340
                     Q +  A  +   M  R GF P    YN ++ ++  S + G + ++L E++
Sbjct: 633 NSMVSIYGRRQMVAKANGVLDYMKER-GFTPSMATYNSLMYMHSRSADFGKSEEILREIL 691

Query: 341 YNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPY 400
             G  PDI +YN +     +  ++ +AS +F+EM  +  V +       +  Y       
Sbjct: 692 AKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYNTFIGSYAADSMFE 751

Query: 401 VAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEA 437
            AI   +YMI++ C     T N +V G C ++   EA
Sbjct: 752 EAIGVVRYMIKHGCRPNQNTYNSIVDGYCKLNRKDEA 788



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 80/373 (21%), Positives = 147/373 (39%), Gaps = 44/373 (11%)

Query: 106 LVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASVFSSYVVADRVKDAITTFDVMEQY 164
           +++ +LGK     +  +    ++++   L + ++ S+ S++  + R ++A+  F  ME+ 
Sbjct: 178 IIISMLGKEGRVSSAANMFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEED 237

Query: 165 GCKHDVFALN-----------------SLLSAICRDGKTIDAWQFLRVVD---------- 197
           GCK  +   N                 SL+  +  DG   DA+ +  ++           
Sbjct: 238 GCKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQE 297

Query: 198 ----------GRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSY 247
                          D  TY  LL+ + K      A K   EMV+  G+ P ++  Y+S 
Sbjct: 298 AAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLN-GFSP-SIVTYNSL 355

Query: 248 LITLLKGCDGIYETVNSLK-RMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGR 306
           +    +  DG+ +    LK +M E+G  P +  +            +  A  I+  M   
Sbjct: 356 ISAYAR--DGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRN- 412

Query: 307 IGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWE 366
            G +P+   +N  I +Y    +    MK+ DE+   G  PDI T+N L     +     E
Sbjct: 413 AGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSE 472

Query: 367 ASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVA 426
            SG+F EM +   V   E     +  Y        A+  ++ M++   +    T N ++A
Sbjct: 473 VSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLA 532

Query: 427 GLCDMHMLPEAVK 439
            L    M  ++ K
Sbjct: 533 ALARGGMWEQSEK 545



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 68/257 (26%), Positives = 108/257 (42%), Gaps = 14/257 (5%)

Query: 124 IKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRD 183
           +K    +++L  +  A + S      RV  A   F+ +++ G   DV++  SL+SA    
Sbjct: 162 MKQKDYQSMLDNSVVAIIISMLGKEGRVSSAANMFNGLQEDGFSLDVYSYTSLISAFANS 221

Query: 184 GKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVP 242
           G+  +A   F ++ +   KP   TY ++L  + K     N   +  E +   G  PD   
Sbjct: 222 GRYREAVNVFKKMEEDGCKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPD--- 278

Query: 243 AYD-SYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLT--GQNLRGAEF- 298
           AY  + LIT  K      E     + M       G ++ K+ +   L   G++ R  E  
Sbjct: 279 AYTYNTLITCCKRGSLHQEAAQVFEEMKA----AGFSYDKVTYNALLDVYGKSHRPKEAM 334

Query: 299 -IWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEF 357
            +   MV   GF P    YN +IS Y        AM+L ++M   G  PD+ TY  L   
Sbjct: 335 KVLNEMVLN-GFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSG 393

Query: 358 LVKGRKLWEASGLFNEM 374
             +  K+  A  +F EM
Sbjct: 394 FERAGKVESAMSIFEEM 410


>gi|414874000|tpg|DAA52557.1| TPA: hypothetical protein ZEAMMB73_743775 [Zea mays]
          Length = 630

 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 83/322 (25%), Positives = 148/322 (45%), Gaps = 22/322 (6%)

Query: 65  VSQETVEQVLK--FSYSHPGPAVKFFRWSAYQLND-KHSPYAWNLVVDLLGKNCLFDAMW 121
           VS E    VLK          AVK FR+   QL     +   +N+++  L       A  
Sbjct: 229 VSAEAFNPVLKAMLRAGDVNGAVKLFRF--MQLKGCTLTAVTYNVLLHGLLLCGEARAAM 286

Query: 122 DAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAI 180
           + ++ M+ E ++  L T+ +V    V   RV+DA      M   G     F  +++++  
Sbjct: 287 NIMRRMENEGIVPGLMTYGAVVDGLVKCGRVEDAWKVAQEMGGQGLAPSEFVFSAVITGF 346

Query: 181 CRDG---KTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWD 237
           C+ G   + +  W+ +  V  R+KP+   Y+ +++G+ +   +  A+K F EMV     D
Sbjct: 347 CKSGEVDRALMVWETM--VAARVKPNVVLYSAMIDGFARSGRMTEAEKLFEEMV-----D 399

Query: 238 PDNVPAYDSYLITLLKGCDGIYETVNSL---KRMMERGCNPGMTFFKLAFEECLTGQNLR 294
              +P   +Y  ++++G   I  +  +L   + M++ GC P    + +          L+
Sbjct: 400 AKCIPNIVTY-SSMVRGYFHIANSSRALSTWEEMIKVGCVPTAISYSILISGLCDVGRLK 458

Query: 295 GAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNG-AFPDIQTYNI 353
            A  +W  M+GR G  PDT  Y  M+   C S      ++L ++M+  G A PD+ +YN+
Sbjct: 459 DAMMVWKNMIGR-GCAPDTIAYTSMMKGLCMSGMVDGGLRLFNDMLAKGDAKPDVISYNV 517

Query: 354 LFEFLVKGRKLWEASGLFNEMV 375
           L + L++   L  A  L N+M+
Sbjct: 518 LLDALIRTNDLPRAMDLLNQML 539



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 72/292 (24%), Positives = 134/292 (45%), Gaps = 8/292 (2%)

Query: 159 DVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR--VVDGRIKPDNDTYAILLEGWEK 216
           DV+  +    D F  ++++SA+   G   +A   +   VVDG +    + +  +L+   +
Sbjct: 186 DVIPAWNLVPDKFTYSTVVSALADAGCVEEAVALVHEMVVDGVV--SAEAFNPVLKAMLR 243

Query: 217 ERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPG 276
             DV  A K F  M ++ G     V  Y+  L  LL  C      +N ++RM   G  PG
Sbjct: 244 AGDVNGAVKLFRFMQLK-GCTLTAV-TYNVLLHGLLL-CGEARAAMNIMRRMENEGIVPG 300

Query: 277 MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLL 336
           +  +    +  +    +  A  +   M G+ G  P   +++ +I+ +C S E   A+ + 
Sbjct: 301 LMTYGAVVDGLVKCGRVEDAWKVAQEMGGQ-GLAPSEFVFSAVITGFCKSGEVDRALMVW 359

Query: 337 DEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDS 396
           + MV     P++  Y+ + +   +  ++ EA  LF EMV  + + N     + VR Y   
Sbjct: 360 ETMVAARVKPNVVLYSAMIDGFARSGRMTEAEKLFEEMVDAKCIPNIVTYSSMVRGYFHI 419

Query: 397 DDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448
            +   A+  W+ MI+  C   + + ++L++GLCD+  L +A+   K M  +G
Sbjct: 420 ANSSRALSTWEEMIKVGCVPTAISYSILISGLCDVGRLKDAMMVWKNMIGRG 471



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 72/273 (26%), Positives = 129/273 (47%), Gaps = 15/273 (5%)

Query: 104 WNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVME 162
           +  VVD L K    +  W   + M  + +  S   F++V + +  +  V  A+  ++ M 
Sbjct: 304 YGAVVDGLVKCGRVEDAWKVAQEMGGQGLAPSEFVFSAVITGFCKSGEVDRALMVWETMV 363

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDVA 221
               K +V   ++++    R G+  +A + F  +VD +  P+  TY+ ++ G+    + +
Sbjct: 364 AARVKPNVVLYSAMIDGFARSGRMTEAEKLFEEMVDAKCIPNIVTYSSMVRGYFHIANSS 423

Query: 222 NAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD--GIYETVNSLKRMMERGCNP-GMT 278
            A  T+ EM I+VG     VP   SY I +   CD   + + +   K M+ RGC P  + 
Sbjct: 424 RALSTWEEM-IKVGC----VPTAISYSILISGLCDVGRLKDAMMVWKNMIGRGCAPDTIA 478

Query: 279 FFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDE 338
           +  +    C++G  + G   ++  M+ +   +PD   YN+++     +N+   AM LL++
Sbjct: 479 YTSMMKGLCMSGM-VDGGLRLFNDMLAKGDAKPDVISYNVLLDALIRTNDLPRAMDLLNQ 537

Query: 339 MVYNGAFPDIQTYNI-LFEFLV---KGRKLWEA 367
           M+     PD  T NI L EF V   KGR+  E 
Sbjct: 538 MLDQMCDPDTITCNIFLREFGVLEGKGREFLEG 570


>gi|449476143|ref|XP_004154653.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g01110-like [Cucumis sativus]
          Length = 749

 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 82/294 (27%), Positives = 125/294 (42%), Gaps = 13/294 (4%)

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERD 219
           ME  G   D+   N+L++A CR+G   +A+Q L     R ++P   TY  +L G  K   
Sbjct: 283 MEGKGVFADIVTYNTLINAYCREGLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGK 342

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTF 279
              AK    EM +++G  P N   Y++ L+ + +  D I E       M  RG  P +  
Sbjct: 343 YDRAKDVLIEM-LQLGLTP-NAATYNTLLVEICRR-DNILEAQEIFDEMSRRGVLPDLVS 399

Query: 280 FKLAFEECLTGQNLRGAEFIWGAM----VGRIGFRPDTHMYNMMISLYCYSNETGAAMKL 335
           F       L G   R        M    + R G  PD  +Y ++I  +C +     A+K+
Sbjct: 400 F-----SSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKM 454

Query: 336 LDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMD 395
            DEM+  G F D+ TYN     L K +   +A  LFNEMV+   V +       +R Y  
Sbjct: 455 RDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCK 514

Query: 396 SDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
             +   A+  ++ M+  +      T N L+ G C    +  A +    M  K I
Sbjct: 515 DGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDI 568



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 93/346 (26%), Positives = 153/346 (44%), Gaps = 9/346 (2%)

Query: 136 ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRV 195
           AT+ ++       D + +A   FD M + G   D+ + +SL+  + R+G    A    R 
Sbjct: 363 ATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFRE 422

Query: 196 VD-GRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG 254
           ++   I PDN  Y IL++G+ +   +++A K   EM+   G   D V  Y+++L  L K 
Sbjct: 423 MERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLAR-GCFMD-VVTYNTFLNGLCK- 479

Query: 255 CDGIYETVNSL-KRMMERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD 312
              ++   + L   M+ERG  P   TF  L    C  G N+  A  ++ AMV R   +PD
Sbjct: 480 -KKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDG-NMDKALNLFEAMV-RTNLKPD 536

Query: 313 THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFN 372
              YN +I  +C + E G A +L D+M+     PD  +Y  +         L EA  L +
Sbjct: 537 KVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCD 596

Query: 373 EMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMH 432
           +M++     N   C   ++ Y  S D   A ++   MI N     S + N L+ G     
Sbjct: 597 QMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEA 656

Query: 433 MLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKK 478
            L +A      M ++G+Q      + +        K    E++L+K
Sbjct: 657 NLEKAFILINEMEKRGLQFNIITYNLILNGFCAEGKMQEAEQVLRK 702



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 70/271 (25%), Positives = 121/271 (44%), Gaps = 17/271 (6%)

Query: 115 CLFDAMWDAIKSMKKENV-----LSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHD 169
           C   A+ DA+K M+ E +     + + T+ +  +         DA   F+ M + G   D
Sbjct: 443 CRNGALSDALK-MRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPD 501

Query: 170 VFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFG 228
            +   +L+   C+DG    A   F  +V   +KPD  TY  L++G+ K  ++  AK+ + 
Sbjct: 502 FYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWD 561

Query: 229 EMVIEVGWDPDNVPAYDSYLITLLKGCDG--IYETVNSLKRMMERGCNPGM-TFFKLAFE 285
           +M+       D +P + SY   L   C    + E +N   +M+E+G  P + T   L   
Sbjct: 562 DMI-----RKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKG 616

Query: 286 ECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAF 345
            C +G   +  E++   M+   G  PD+  YN +I  Y        A  L++EM   G  
Sbjct: 617 YCRSGDMPKAYEYL-SKMISN-GIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQ 674

Query: 346 PDIQTYNILFEFLVKGRKLWEASGLFNEMVK 376
            +I TYN++        K+ EA  +  +M++
Sbjct: 675 FNIITYNLILNGFCAEGKMQEAEQVLRKMIE 705



 Score = 55.1 bits (131), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 49/229 (21%), Positives = 96/229 (41%), Gaps = 42/229 (18%)

Query: 120 MWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSA 179
           +WD +  ++K+ +    ++ +V + +  +  + +A+   D M + G + ++   N+L+  
Sbjct: 559 LWDDM--IRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKG 616

Query: 180 ICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDP 238
            CR G    A+++L +++   I PD+ +Y  L++G+ KE   AN +K F           
Sbjct: 617 YCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKE---ANLEKAF----------- 662

Query: 239 DNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEF 298
                    LI                  M +RG    +  + L          ++ AE 
Sbjct: 663 --------ILIN----------------EMEKRGLQFNIITYNLILNGFCAEGKMQEAEQ 698

Query: 299 IWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPD 347
           +   M+  IG  PD   Y+ +I+ +   +    A +  DEM+  G  PD
Sbjct: 699 VLRKMI-EIGINPDGATYSSLINGHVSQDNMKEAFRFHDEMLQRGLVPD 746


>gi|326489757|dbj|BAK01859.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 746

 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 95/391 (24%), Positives = 165/391 (42%), Gaps = 15/391 (3%)

Query: 84  AVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASVF 142
           AVK     A +  + ++    +++  L  K  + DA+   ++ M    V L    F +V 
Sbjct: 306 AVKLLDEMAAKGLESNATVYTSVIALLCNKGQVSDALR-VLEDMTMHGVALDAVVFTTVI 364

Query: 143 SSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGRIK 201
           S +     +  A   F+ M++ G   D     +L++ +CR G+  +A + L+ +VD  + 
Sbjct: 365 SGFCSKGDLAAARRLFEEMQKRGLAADRVTHTALINGLCRAGELKEADRVLQEMVDKGLD 424

Query: 202 PDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYET 261
            D  TY +L++G+ K  ++  A +   EMV        NV  Y +    L K  D     
Sbjct: 425 VDVVTYTVLIDGYCKRGNMVEAFRVHNEMVGR--RVAPNVVTYTALSDGLCKQGD----- 477

Query: 262 VNSLKRMMERGCNPGMTFFKLAFEECLTG----QNLRGAEFIWGAMVGRIGFRPDTHMYN 317
           V +   ++   CN G+      +   + G     NL  A  I   M    G R D + Y 
Sbjct: 478 VRAANELLHEMCNKGLELNVYTYNSLINGLCKFGNLEQAMRIMTEMEA-AGHRTDVYTYT 536

Query: 318 MMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKN 377
            +I   C S E   A  +L EM+  G  P I TYN+L        ++     L   M++ 
Sbjct: 537 TLIDTLCKSGEFDRAHNMLQEMLDKGIKPSIATYNVLMNGFCMSGRVEGGKKLLEWMLEK 596

Query: 378 ENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEA 437
               N     + ++ Y    +     + +K M     +    T N+L+ G C    + EA
Sbjct: 597 NVRPNVVTYNSLMKQYCIDKNMKSTTEIYKGMHSQEVAPNENTYNILIKGHCKARNMKEA 656

Query: 438 VKYAKGMAEKGIQVTPFALSKLKQILIKARK 468
           + + + M EKG+++T  + S L ++L K +K
Sbjct: 657 LYFHQEMIEKGLRLTASSYSALIRLLNKKKK 687



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 83/331 (25%), Positives = 132/331 (39%), Gaps = 16/331 (4%)

Query: 153 DAITTF-DVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILL 211
           +AI  F ++ ++  C H++  L +LLSA    G+  DA Q    +     PD  TY  ++
Sbjct: 242 EAIALFRELPDKNVCSHNIL-LKALLSA----GRLKDACQHFDEMSS--PPDVVTYGTMV 294

Query: 212 EGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMER 271
            G+    ++ NA K   EM  + G +  N   Y S +I LL     + + +  L+ M   
Sbjct: 295 HGYCVRGELENAVKLLDEMAAK-GLE-SNATVYTS-VIALLCNKGQVSDALRVLEDMTMH 351

Query: 272 GCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGA 331
           G       F        +  +L  A  ++  M  R G   D   +  +I+  C + E   
Sbjct: 352 GVALDAVVFTTVISGFCSKGDLAAARRLFEEMQKR-GLAADRVTHTALINGLCRAGELKE 410

Query: 332 AMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVR 391
           A ++L EMV  G   D+ TY +L +   K   + EA  + NEMV      N     A   
Sbjct: 411 ADRVLQEMVDKGLDVDVVTYTVLIDGYCKRGNMVEAFRVHNEMVGRRVAPNVVTYTALSD 470

Query: 392 VYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQV 451
                 D   A +    M          T N L+ GLC    L +A++    M   G + 
Sbjct: 471 GLCKQGDVRAANELLHEMCNKGLELNVYTYNSLINGLCKFGNLEQAMRIMTEMEAAGHRT 530

Query: 452 TPFALSKLKQILIKA----RKEAVYEELLKK 478
             +  + L   L K+    R   + +E+L K
Sbjct: 531 DVYTYTTLIDTLCKSGEFDRAHNMLQEMLDK 561


>gi|296089633|emb|CBI39452.3| unnamed protein product [Vitis vinifera]
          Length = 718

 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 96/371 (25%), Positives = 158/371 (42%), Gaps = 46/371 (12%)

Query: 65  VSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAI 124
           +S+ TV Q L+   + P  A+ FFRW   +    H+  ++ L++++LG++   +A  + +
Sbjct: 93  LSKTTVLQTLQLIRT-PAKALHFFRWVEAK-GFTHNEQSYFLMIEILGRSRNLNAARNFV 150

Query: 125 KSMKKEN----VLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAI 180
            S++K++     L    F S+  SY  A   +++I  F  M++ G    V   NSLLS +
Sbjct: 151 FSIEKKSGGAVKLGDRFFNSLIRSYGWAGLFQESIKVFKTMKEIGVSPSVVTFNSLLSIV 210

Query: 181 CRDGKTIDAWQ-FLRVVDG-RIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDP 238
            + G+T  A Q F  ++D   + PD  T+ IL+ G+     V      F EM      DP
Sbjct: 211 LKRGRTSMAKQLFDEMLDTYGVTPDTYTFNILIRGFCMNSMVDEGFWFFKEMS-RFKCDP 269

Query: 239 DNV---------------------------------PAYDSYLITLLKG-C--DGIYETV 262
           D V                                 P   +Y  TL++G C    + E +
Sbjct: 270 DVVTYNTLVDGLCRAGKVKIAHNVVKGMVKKSPNLSPNVVTY-TTLIRGYCMKQDMAEAL 328

Query: 263 NSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISL 322
           + L  M+ RG  P    +    +     Q L   + I   MVG  GF PDT   N +I  
Sbjct: 329 SLLAEMVSRGLKPNKITYNTLIQGLCEAQKLDKIKEILEGMVGDGGFIPDTCTLNTLIKA 388

Query: 323 YCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLN 382
           +C   +   A  + ++M      PD  TY++L   L +      A   F+E+ + E +L+
Sbjct: 389 HCTMGKLEEAFSVFEKMSELRVQPDSATYSVLVRSLCQRGDFRRAEEFFDELAEKEILLH 448

Query: 383 HENCRAAVRVY 393
              C+  V  Y
Sbjct: 449 DVGCKPLVAAY 459



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 73/296 (24%), Positives = 131/296 (44%), Gaps = 21/296 (7%)

Query: 169 DVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTF 227
           D   LN+L+ A C  GK  +A+  F ++ + R++PD+ TY++L+    +  D   A++ F
Sbjct: 378 DTCTLNTLIKAHCTMGKLEEAFSVFEKMSELRVQPDSATYSVLVRSLCQRGDFRRAEEFF 437

Query: 228 GEM------VIEVGWDPDNVPAYD---SYLITLLKGCDGIYETVNSLKRMMERGCNPGMT 278
            E+      + +VG  P  V AY+    YL +   G     E V   +++M+RG     +
Sbjct: 438 DELAEKEILLHDVGCKP-LVAAYNPMFEYLCS--NGKTKKAERV--FRQLMKRGTQDPPS 492

Query: 279 FFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDE 338
           +  L    C  G    G + +   ++ R  F PD   Y +MI       +   A K L++
Sbjct: 493 YKTLILGHCREGTPEAGFDLL--VLMLRRDFVPDAETYGLMIDGLLKKGDPVLAHKSLEK 550

Query: 339 MVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKN---ENV-LNHENCRAAVRVYM 394
           M+ +   P    ++ +   LV+     E++ L   M++    +N+ L+       V    
Sbjct: 551 MLKSSHLPTTAIFHSILAALVEKGCAHESASLVKLMLERRIRQNIDLSTHTMEELVSFLC 610

Query: 395 DSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQ 450
            S     A K   + +E   S   +  + +++GLC  H + EA      + EKG+Q
Sbjct: 611 QSRKLLEAQKMLLFSLEKRQSVDIDMCSTVISGLCKAHKVSEAFALYYELVEKGMQ 666



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 63/269 (23%), Positives = 112/269 (41%), Gaps = 15/269 (5%)

Query: 189 AWQFLRVVDGRIKPDND-TYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSY 247
           A  F R V+ +    N+ +Y +++E   + R++  A+     +  + G     V   D +
Sbjct: 111 ALHFFRWVEAKGFTHNEQSYFLMIEILGRSRNLNAARNFVFSIEKKSG---GAVKLGDRF 167

Query: 248 LITLLK--GCDGIY-ETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMV 304
             +L++  G  G++ E++   K M E G +P +  F       L       A+ ++  M+
Sbjct: 168 FNSLIRSYGWAGLFQESIKVFKTMKEIGVSPSVVTFNSLLSIVLKRGRTSMAKQLFDEML 227

Query: 305 GRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKL 364
              G  PDT+ +N++I  +C ++          EM      PD+ TYN L + L +  K+
Sbjct: 228 DTYGVTPDTYTFNILIRGFCMNSMVDEGFWFFKEMSRFKCDPDVVTYNTLVDGLCRAGKV 287

Query: 365 WEASGLFNEMVKNE-----NVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSE 419
             A  +   MVK       NV+ +      +R Y    D   A+     M+         
Sbjct: 288 KIAHNVVKGMVKKSPNLSPNVVTYTTL---IRGYCMKQDMAEALSLLAEMVSRGLKPNKI 344

Query: 420 TGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448
           T N L+ GLC+   L +  +  +GM   G
Sbjct: 345 TYNTLIQGLCEAQKLDKIKEILEGMVGDG 373



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 74/328 (22%), Positives = 128/328 (39%), Gaps = 54/328 (16%)

Query: 110 LLGKNCLFDAMWDAIKSMKKENVLSL----ATFASVFSSYVVADRVKDAITTFD------ 159
           L+  +C    + +A    +K + L +    AT++ +  S       + A   FD      
Sbjct: 385 LIKAHCTMGKLEEAFSVFEKMSELRVQPDSATYSVLVRSLCQRGDFRRAEEFFDELAEKE 444

Query: 160 -VMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKE- 217
            ++   GCK  V A N +   +C +GKT  A +  R +  R   D  +Y  L+ G  +E 
Sbjct: 445 ILLHDVGCKPLVAAYNPMFEYLCSNGKTKKAERVFRQLMKRGTQDPPSYKTLILGHCREG 504

Query: 218 --------------RDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG----CDGIY 259
                         RD     +T+G M+  +    D V A+ S L  +LK        I+
Sbjct: 505 TPEAGFDLLVLMLRRDFVPDAETYGLMIDGLLKKGDPVLAHKS-LEKMLKSSHLPTTAIF 563

Query: 260 ETVNSLKRMMERGC-NPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNM 318
            ++  L  ++E+GC +   +  KL  E  +                 R      TH    
Sbjct: 564 HSI--LAALVEKGCAHESASLVKLMLERRI-----------------RQNIDLSTHTMEE 604

Query: 319 MISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNE 378
           ++S  C S +   A K+L   +      DI   + +   L K  K+ EA  L+ E+V  E
Sbjct: 605 LVSFLCQSRKLLEAQKMLLFSLEKRQSVDIDMCSTVISGLCKAHKVSEAFALYYELV--E 662

Query: 379 NVLNHE-NCRAAVRVYMDSDDPYVAIKF 405
             + H   C+  +R+ ++++      KF
Sbjct: 663 KGMQHRLTCQEDLRISLEAEGRLNEAKF 690



 Score = 40.8 bits (94), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 58/139 (41%), Gaps = 1/139 (0%)

Query: 316 YNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
           +N +I  Y ++     ++K+   M   G  P + T+N L   ++K  +   A  LF+EM+
Sbjct: 168 FNSLIRSYGWAGLFQESIKVFKTMKEIGVSPSVVTFNSLLSIVLKRGRTSMAKQLFDEML 227

Query: 376 KNENVL-NHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHML 434
               V  +       +R +  +        F+K M    C     T N LV GLC    +
Sbjct: 228 DTYGVTPDTYTFNILIRGFCMNSMVDEGFWFFKEMSRFKCDPDVVTYNTLVDGLCRAGKV 287

Query: 435 PEAVKYAKGMAEKGIQVTP 453
             A    KGM +K   ++P
Sbjct: 288 KIAHNVVKGMVKKSPNLSP 306


>gi|449442579|ref|XP_004139059.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Cucumis sativus]
          Length = 749

 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 82/294 (27%), Positives = 125/294 (42%), Gaps = 13/294 (4%)

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERD 219
           ME  G   D+   N+L++A CR+G   +A+Q L     R ++P   TY  +L G  K   
Sbjct: 283 MEGKGVFADIVTYNTLINAYCREGLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGK 342

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTF 279
              AK    EM +++G  P N   Y++ L+ + +  D I E       M  RG  P +  
Sbjct: 343 YDRAKDVLIEM-LQLGLTP-NAATYNTLLVEICRR-DNILEAQEIFDEMSRRGVLPDLVS 399

Query: 280 FKLAFEECLTGQNLRGAEFIWGAM----VGRIGFRPDTHMYNMMISLYCYSNETGAAMKL 335
           F       L G   R        M    + R G  PD  +Y ++I  +C +     A+K+
Sbjct: 400 F-----SSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKM 454

Query: 336 LDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMD 395
            DEM+  G F D+ TYN     L K +   +A  LFNEMV+   V +       +R Y  
Sbjct: 455 RDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCK 514

Query: 396 SDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
             +   A+  ++ M+  +      T N L+ G C    +  A +    M  K I
Sbjct: 515 DGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDI 568



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 93/346 (26%), Positives = 153/346 (44%), Gaps = 9/346 (2%)

Query: 136 ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRV 195
           AT+ ++       D + +A   FD M + G   D+ + +SL+  + R+G    A    R 
Sbjct: 363 ATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFRE 422

Query: 196 VD-GRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG 254
           ++   I PDN  Y IL++G+ +   +++A K   EM+   G   D V  Y+++L  L K 
Sbjct: 423 MERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLAR-GCFMD-VVTYNTFLNGLCK- 479

Query: 255 CDGIYETVNSL-KRMMERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD 312
              ++   + L   M+ERG  P   TF  L    C  G N+  A  ++ AMV R   +PD
Sbjct: 480 -KKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDG-NMDKALNLFEAMV-RTNLKPD 536

Query: 313 THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFN 372
              YN +I  +C + E G A +L D+M+     PD  +Y  +         L EA  L +
Sbjct: 537 KVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCD 596

Query: 373 EMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMH 432
           +M++     N   C   ++ Y  S D   A ++   MI N     S + N L+ G     
Sbjct: 597 QMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEA 656

Query: 433 MLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKK 478
            L +A      M ++G+Q      + +        K    E++L+K
Sbjct: 657 NLEKAFILINEMEKRGLQFNIITYNLILNGFCAEGKMQEAEQVLRK 702



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 70/271 (25%), Positives = 121/271 (44%), Gaps = 17/271 (6%)

Query: 115 CLFDAMWDAIKSMKKENV-----LSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHD 169
           C   A+ DA+K M+ E +     + + T+ +  +         DA   F+ M + G   D
Sbjct: 443 CRNGALSDALK-MRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPD 501

Query: 170 VFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFG 228
            +   +L+   C+DG    A   F  +V   +KPD  TY  L++G+ K  ++  AK+ + 
Sbjct: 502 FYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWD 561

Query: 229 EMVIEVGWDPDNVPAYDSYLITLLKGCDG--IYETVNSLKRMMERGCNPGM-TFFKLAFE 285
           +M+       D +P + SY   L   C    + E +N   +M+E+G  P + T   L   
Sbjct: 562 DMI-----RKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKG 616

Query: 286 ECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAF 345
            C +G   +  E++   M+   G  PD+  YN +I  Y        A  L++EM   G  
Sbjct: 617 YCRSGDMPKAYEYL-SKMISN-GIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQ 674

Query: 346 PDIQTYNILFEFLVKGRKLWEASGLFNEMVK 376
            +I TYN++        K+ EA  +  +M++
Sbjct: 675 FNIITYNLILNGFCAEGKMQEAEQVLRKMIE 705



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/229 (21%), Positives = 96/229 (41%), Gaps = 42/229 (18%)

Query: 120 MWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSA 179
           +WD +  ++K+ +    ++ +V + +  +  + +A+   D M + G + ++   N+L+  
Sbjct: 559 LWDDM--IRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKG 616

Query: 180 ICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDP 238
            CR G    A+++L +++   I PD+ +Y  L++G+ KE   AN +K F           
Sbjct: 617 YCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKE---ANLEKAF----------- 662

Query: 239 DNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEF 298
                    LI                  M +RG    +  + L          ++ AE 
Sbjct: 663 --------ILIN----------------EMEKRGLQFNIITYNLILNGFCAEGKMQEAEQ 698

Query: 299 IWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPD 347
           +   M+  IG  PD   Y+ +I+ +   +    A +  DEM+  G  PD
Sbjct: 699 VLRKMI-EIGINPDGATYSSLINGHVSQDNMKEAFRFHDEMLQRGLVPD 746


>gi|302762673|ref|XP_002964758.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
 gi|300166991|gb|EFJ33596.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
          Length = 552

 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 86/324 (26%), Positives = 146/324 (45%), Gaps = 20/324 (6%)

Query: 135 LATFASVFSSYVVADRVKDAITTFD--VMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ- 191
           L TF  +         ++ A    D   M + G   DV   NS+L  +C++ + +DA   
Sbjct: 171 LITFGLIIKGLCKEGEIEAAFRVVDEMFMIESGLSPDVITFNSVLDGLCKEQRILDAHNV 230

Query: 192 FLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITL 251
           F R ++   +P+  TY+ L++G  K   +  A +   +MV E+G   + V  Y + +  L
Sbjct: 231 FKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMV-ELGCRANTV-TYSTVVDGL 288

Query: 252 LKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRP 311
           LK    + + V  L++M + GC P    +    +     Q LR A  +   M+   GF P
Sbjct: 289 LK-VGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREML-EAGFHP 346

Query: 312 DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLF 371
               Y  +    C S     A+++LD M   G  P+  TY+ + + L K  ++ EA G F
Sbjct: 347 SVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYF 406

Query: 372 NEMVKNENVLNHENCRAAVRVYMDS-------DDPYVAIKFWKYMIENHCSDLSETGNLL 424
            +M ++E V  H    +A+   +D        D+ Y   +F + MI         T ++L
Sbjct: 407 EKMARDEVVAPHVIAYSAL---IDGLCKAGKIDEAY---EFLERMIRAGRIPDVVTFSIL 460

Query: 425 VAGLCDMHMLPEAVKYAKGMAEKG 448
           + GLCD   +   ++  +GMAE+G
Sbjct: 461 INGLCDAGRIDTGLELFRGMAERG 484



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 90/388 (23%), Positives = 152/388 (39%), Gaps = 60/388 (15%)

Query: 103 AWNLVVDLLGKNC-----LFDAMWDAI-KSMKKENVLSL--------------ATFASVF 142
           A++L  +   K C      ++ M D + K  + EN L+L               T++++ 
Sbjct: 49  AYDLFEEARAKGCHPTVVTYNTMIDGLCKCGRIENALTLYDDMAIHFGFRPTVVTYSTLI 108

Query: 143 SSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIK 201
                   V       + M   GC  +    N+L++A+   G++ +A+  L ++      
Sbjct: 109 DGLCRDHEVDKGCKLLEEMAGRGCAPNAVTYNTLVNALLGQGRSKEAFSLLEQMAANGCP 168

Query: 202 PDNDTYAILLEGWEKERDVANAKKTFGEM-VIEVGWDPDNVPAYDSYLITLLKGCDGIYE 260
           P+  T+ ++++G  KE ++  A +   EM +IE G  PD V  ++S L  L K    I +
Sbjct: 169 PELITFGLIIKGLCKEGEIEAAFRVVDEMFMIESGLSPD-VITFNSVLDGLCKE-QRILD 226

Query: 261 TVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMI 320
             N  KR +ERGC P +  +    +       +  A  +   MV  +G R +T  Y+ ++
Sbjct: 227 AHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMV-ELGCRANTVTYSTVV 285

Query: 321 SLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENV 380
                      A+ +L +M   G  PD  TYN L +   K ++L EA GL  EM++    
Sbjct: 286 DGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEA--- 342

Query: 381 LNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKY 440
                                   F   ++         T   L  GLC      EAV+ 
Sbjct: 343 -----------------------GFHPSVV---------TYTTLCHGLCRSGRFDEAVEI 370

Query: 441 AKGMAEKGIQVTPFALSKLKQILIKARK 468
              MA +G        S +   L KA +
Sbjct: 371 LDYMAARGCAPNAITYSSIVDGLCKAGR 398



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 82/349 (23%), Positives = 138/349 (39%), Gaps = 22/349 (6%)

Query: 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL- 193
           + T+ ++        RVK+A   F+     GC   V   N+++  +C+ G+  +A     
Sbjct: 30  VVTYGALIDGLGKQRRVKEAYDLFEEARAKGCHPTVVTYNTMIDGLCKCGRIENALTLYD 89

Query: 194 -RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
              +    +P   TY+ L++G  ++ +V    K   EM    G  P N   Y++ L+  L
Sbjct: 90  DMAIHFGFRPTVVTYSTLIDGLCRDHEVDKGCKLLEEMAGR-GCAP-NAVTYNT-LVNAL 146

Query: 253 KGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEE-CLTGQNLRGAEFIWGAMVGRIGFRP 311
            G     E  + L++M   GC P +  F L  +  C  G+       +    +   G  P
Sbjct: 147 LGQGRSKEAFSLLEQMAANGCPPELITFGLIIKGLCKEGEIEAAFRVVDEMFMIESGLSP 206

Query: 312 DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLF 371
           D   +N ++   C       A  +    +  G  P++ TY+ L + L K  K+ EA  L 
Sbjct: 207 DVITFNSVLDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLL 266

Query: 372 NEMVKNENVLNHENCRAAVRVYMDSDDPYV-------AIKFWKYMIENHCSDLSETGNLL 424
            +MV+         CRA    Y    D  +       A+   + M +  C   + T N L
Sbjct: 267 AKMVE-------LGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTL 319

Query: 425 VAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARK--EAV 471
           + G      L EAV   + M E G   +    + L   L ++ +  EAV
Sbjct: 320 IDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAV 368



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 73/333 (21%), Positives = 133/333 (39%), Gaps = 55/333 (16%)

Query: 91  SAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLA----------TFAS 140
           +A+++ D+       L  D++  N + D +    + +   NV   A          T+++
Sbjct: 189 AAFRVVDEMFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCRPNVVTYST 248

Query: 141 VFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV-DGR 199
           +        ++ +A+     M + GC+ +    ++++  + + G+  DA   LR + D  
Sbjct: 249 LIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAG 308

Query: 200 IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIY 259
             PD  TY  L++G+ K + +  A     EM +E G+ P +V  Y +    L +   G +
Sbjct: 309 CLPDAVTYNTLIDGFFKRQRLREAVGLLREM-LEAGFHP-SVVTYTTLCHGLCR--SGRF 364

Query: 260 -ETVNSLKRMMERGCNPGMT---------------------FFKLAFEE----------- 286
            E V  L  M  RGC P                        F K+A +E           
Sbjct: 365 DEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPHVIAYSA 424

Query: 287 -----CLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVY 341
                C  G+     EF+   +  R G  PD   ++++I+  C +      ++L   M  
Sbjct: 425 LIDGLCKAGKIDEAYEFLERMI--RAGRIPDVVTFSILINGLCDAGRIDTGLELFRGMAE 482

Query: 342 NGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
            G  PD+ TY  L + L +  ++ EA  LF +M
Sbjct: 483 RGCVPDMVTYATLVDRLCRASRVDEAFDLFQQM 515



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 75/324 (23%), Positives = 121/324 (37%), Gaps = 67/324 (20%)

Query: 176 LLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGE----- 229
           ++  +C+  K   A   F ++VD  I PD  TY  L++G  K+R V  A   F E     
Sbjct: 1   MIDGLCKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKG 60

Query: 230 ------------------------------MVIEVGWDPDNVPAYDSYLITLL------K 253
                                         M I  G+ P  V  Y + +  L       K
Sbjct: 61  CHPTVVTYNTMIDGLCKCGRIENALTLYDDMAIHFGFRP-TVVTYSTLIDGLCRDHEVDK 119

Query: 254 GCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDT 313
           GC         L+ M  RGC P    +       L GQ      F     +   G  P+ 
Sbjct: 120 GC-------KLLEEMAGRGCAPNAVTYN-TLVNALLGQGRSKEAFSLLEQMAANGCPPEL 171

Query: 314 HMYNMMISLYCYSNETGAAMKLLDE--MVYNGAFPDIQTYNILFEFLVKGRKLWEASGLF 371
             + ++I   C   E  AA +++DE  M+ +G  PD+ T+N + + L K +++ +A  +F
Sbjct: 172 ITFGLIIKGLCKEGEIEAAFRVVDEMFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVF 231

Query: 372 NEMVKNENVLNHENCRAAVRVYMDSDDPYV-------AIKFWKYMIENHCSDLSETGNLL 424
              ++         CR  V  Y    D          A++    M+E  C   + T + +
Sbjct: 232 KRALER-------GCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTV 284

Query: 425 VAGLCDMHMLPEAVKYAKGMAEKG 448
           V GL  +  + +AV   + M + G
Sbjct: 285 VDGLLKVGRMEDAVVVLRQMRDAG 308



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 67/283 (23%), Positives = 119/283 (42%), Gaps = 7/283 (2%)

Query: 94  QLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLA-TFASVFSSYVVADRVK 152
           +L  + +   ++ VVD L K    +     ++ M+    L  A T+ ++   +    R++
Sbjct: 271 ELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLR 330

Query: 153 DAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILL 211
           +A+     M + G    V    +L   +CR G+  +A + L  +  R   P+  TY+ ++
Sbjct: 331 EAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIV 390

Query: 212 EGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMER 271
           +G  K   V  A   F +M  +    P +V AY + +  L K    I E    L+RM+  
Sbjct: 391 DGLCKAGRVTEALGYFEKMARDEVVAP-HVIAYSALIDGLCKA-GKIDEAYEFLERMIRA 448

Query: 272 GCNPGMTFFKLAFEE-CLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETG 330
           G  P +  F +     C  G+   G E   G M  R G  PD   Y  ++   C ++   
Sbjct: 449 GRIPDVVTFSILINGLCDAGRIDTGLELFRG-MAER-GCVPDMVTYATLVDRLCRASRVD 506

Query: 331 AAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNE 373
            A  L  +M  +G  PD  T   +   L++  +  +A  + +E
Sbjct: 507 EAFDLFQQMRSDGLSPDRSTRRTMIHGLLEVNRDEDAKRIQDE 549


>gi|357450985|ref|XP_003595769.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355484817|gb|AES66020.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 497

 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 104/450 (23%), Positives = 187/450 (41%), Gaps = 32/450 (7%)

Query: 13  PSPDPHNKRKRST--FASHLDVPNLPPTIKTLCEIIANTPSPTVEDVLDKTLIRVSQETV 70
           PS  P N R  S+    SH D P L   I+ L +   + P+  +E  L+   I  +   V
Sbjct: 41  PSSFPQNPRNSSSRFLHSHHDSPPLASFIQNLLKFRRDKPTEQIEQALNLIGIHPNNNLV 100

Query: 71  EQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSM-KK 129
            QVL+   S   PA  FF+W +   N   S   +N ++++LGK   F+ +   +  M ++
Sbjct: 101 LQVLQRHRSDWKPAFIFFKWVSKTNNYTPSCEVYNEIINILGKMKCFEELHQVLDEMSQR 160

Query: 130 ENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKH--DVFALNSLLSAICRDGKTI 187
           +  ++  TF  +   +V A ++++AI  F   E++G  +  D  A  +LL  +CR     
Sbjct: 161 KEFINEETFCILIRRFVAAHKLEEAINIFYRREEFGLDNELDSKAFRTLLMWMCRYKHIE 220

Query: 188 DAWQ-FLRVVDG-RIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYD 245
           +A   F R ++  R   D  T+ ++L GW    +   AK+ + +++              
Sbjct: 221 EAETLFHRNLNKFRFCRDIKTWNVILNGWCVLGNTHEAKRLWKDII-------------- 266

Query: 246 SYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVG 305
           +Y    +  C   +E V     + E  C P +  F    +     + +  A  ++  M  
Sbjct: 267 AYKCKEIGNC---FEVVQW--DVEEESCKPDVVIFNCLIDGLCFKKRIPEALQVFHDMKE 321

Query: 306 RIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGA--FPDIQTYNILFEFLVKGRK 363
           R    P+   YN +I             +L+++M        P+  TY+ L + L     
Sbjct: 322 RDCL-PNVATYNSLIKHLFKIRRMEKVYELVEDMERRSGDCLPNGVTYSYLLQSLKAPE- 379

Query: 364 LWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNL 423
             E   +   M +N   ++ + C   +R+YM  DD     K W  M  N       +  +
Sbjct: 380 --EVPAVLERMERNGCAMSDDICNLILRLYMKWDDLDGLRKTWDEMERNGLGPDRRSYTI 437

Query: 424 LVAGLCDMHMLPEAVKYAKGMAEKGIQVTP 453
           ++ G  +     +A++Y + M  KGI + P
Sbjct: 438 MIHGHYENGRTKDAMRYFQEMTSKGIVLEP 467



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 55/214 (25%), Positives = 86/214 (40%), Gaps = 10/214 (4%)

Query: 146 VVADRVKDAITTFDVM----EQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-I 200
           ++A + K+    F+V+    E+  CK DV   N L+  +C   +  +A Q    +  R  
Sbjct: 265 IIAYKCKEIGNCFEVVQWDVEEESCKPDVVIFNCLIDGLCFKKRIPEALQVFHDMKERDC 324

Query: 201 KPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYE 260
            P+  TY  L++   K R +    +   +M    G    N   Y SYL+  LK  +   E
Sbjct: 325 LPNVATYNSLIKHLFKIRRMEKVYELVEDMERRSGDCLPNGVTY-SYLLQSLKAPE---E 380

Query: 261 TVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMI 320
               L+RM   GC        L     +   +L G    W  M  R G  PD   Y +MI
Sbjct: 381 VPAVLERMERNGCAMSDDICNLILRLYMKWDDLDGLRKTWDEM-ERNGLGPDRRSYTIMI 439

Query: 321 SLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNIL 354
             +  +  T  AM+   EM   G   + +T  ++
Sbjct: 440 HGHYENGRTKDAMRYFQEMTSKGIVLEPRTEKLV 473


>gi|225433712|ref|XP_002266503.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02060,
           chloroplastic-like [Vitis vinifera]
          Length = 746

 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 100/397 (25%), Positives = 168/397 (42%), Gaps = 47/397 (11%)

Query: 40  KTLCEIIANTP-SPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDK 98
           + +  +I   P S  ++  L +    +S+ TV Q L+   + P  A+ FFRW   +    
Sbjct: 67  QAMARLINTEPWSHELQSSLAELAPSLSKTTVLQTLQLIRT-PAKALHFFRWVEAK-GFT 124

Query: 99  HSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKEN----VLSLATFASVFSSYVVADRVKDA 154
           H+  ++ L++++LG++   +A  + + S++K++     L    F S+  SY  A   +++
Sbjct: 125 HNEQSYFLMIEILGRSRNLNAARNFVFSIEKKSGGAVKLGDRFFNSLIRSYGWAGLFQES 184

Query: 155 ITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDG-RIKPDNDTYAILLE 212
           I  F  M++ G    V   NSLLS + + G+T  A Q F  ++D   + PD  T+ IL+ 
Sbjct: 185 IKVFKTMKEIGVSPSVVTFNSLLSIVLKRGRTSMAKQLFDEMLDTYGVTPDTYTFNILIR 244

Query: 213 GWEKERDVANAKKTFGEMVIEVGWDPDNV------------------------------- 241
           G+     V      F EM      DPD V                               
Sbjct: 245 GFCMNSMVDEGFWFFKEMS-RFKCDPDVVTYNTLVDGLCRAGKVKIAHNVVKGMVKKSPN 303

Query: 242 --PAYDSYLITLLKG-C--DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGA 296
             P   +Y  TL++G C    + E ++ L  M+ RG  P    +    +     Q L   
Sbjct: 304 LSPNVVTY-TTLIRGYCMKQDMAEALSLLAEMVSRGLKPNKITYNTLIQGLCEAQKLDKI 362

Query: 297 EFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFE 356
           + I   MVG  GF PDT   N +I  +C   +   A  + ++M      PD  TY++L  
Sbjct: 363 KEILEGMVGDGGFIPDTCTLNTLIKAHCTMGKLEEAFSVFEKMSELRVQPDSATYSVLVR 422

Query: 357 FLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVY 393
            L +      A   F+E+ + E +L+   C+  V  Y
Sbjct: 423 SLCQRGDFRRAEEFFDELAEKEILLHDVGCKPLVAAY 459



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 84/386 (21%), Positives = 154/386 (39%), Gaps = 22/386 (5%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSM-KKENVLS--LATFASVFSSYVVADRVKDAITTFD 159
            +N +VD L +        + +K M KK   LS  + T+ ++   Y +   + +A++   
Sbjct: 273 TYNTLVDGLCRAGKVKIAHNVVKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMAEALSLLA 332

Query: 160 VMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR--VVDGRIKPDNDTYAILLEGWEKE 217
            M   G K +    N+L+  +C   K     + L   V DG   PD  T   L++     
Sbjct: 333 EMVSRGLKPNKITYNTLIQGLCEAQKLDKIKEILEGMVGDGGFIPDTCTLNTLIKAHCTM 392

Query: 218 RDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD--GIYETVNSLKR----MMER 271
             +  A   F +M  E+   PD+   Y   + +L +  D     E  + L      + + 
Sbjct: 393 GKLEEAFSVFEKMS-ELRVQPDSA-TYSVLVRSLCQRGDFRRAEEFFDELAEKEILLHDV 450

Query: 272 GCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGA 331
           GC P +  +   FE   +    + AE ++  ++ R    P +  Y  +I  +C      A
Sbjct: 451 GCKPLVAAYNPMFEYLCSNGKTKKAERVFRQLMKRGTQDPPS--YKTLILGHCREGTPEA 508

Query: 332 AMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVR 391
              LL  M+     PD +TY ++ + L+K      A     +M+K+ ++       + + 
Sbjct: 509 GFDLLVLMLRRDFVPDAETYGLMIDGLLKKGDPVLAHKSLEKMLKSSHLPTTAIFHSILA 568

Query: 392 VYMDSDDPYVAIKFWKYMIENHCS---DLS-ETGNLLV-AGLCDMHMLPEAVKYAKGMAE 446
             ++    + +    K M+E       DLS  T  LL  +GL D   +   + Y  G   
Sbjct: 569 ALVEKGCAHESASLVKLMLERRIRQNIDLSTHTVRLLYKSGLQDKAFMTIGLLYENGYLV 628

Query: 447 KGIQVTPFALSKLKQILIKARKEAVY 472
           K  ++  F     K  L++A+K  ++
Sbjct: 629 KMEELVSFLCQSRK--LLEAQKMLLF 652



 Score = 40.4 bits (93), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 58/139 (41%), Gaps = 1/139 (0%)

Query: 316 YNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
           +N +I  Y ++     ++K+   M   G  P + T+N L   ++K  +   A  LF+EM+
Sbjct: 168 FNSLIRSYGWAGLFQESIKVFKTMKEIGVSPSVVTFNSLLSIVLKRGRTSMAKQLFDEML 227

Query: 376 KNENVL-NHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHML 434
               V  +       +R +  +        F+K M    C     T N LV GLC    +
Sbjct: 228 DTYGVTPDTYTFNILIRGFCMNSMVDEGFWFFKEMSRFKCDPDVVTYNTLVDGLCRAGKV 287

Query: 435 PEAVKYAKGMAEKGIQVTP 453
             A    KGM +K   ++P
Sbjct: 288 KIAHNVVKGMVKKSPNLSP 306


>gi|125580078|gb|EAZ21224.1| hypothetical protein OsJ_36877 [Oryza sativa Japonica Group]
          Length = 726

 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 103/436 (23%), Positives = 189/436 (43%), Gaps = 10/436 (2%)

Query: 51  SPTVEDVLDKTLIRVSQETVEQVLKF-SYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVD 109
           SP +E  L + L  +S   V  VL+  +      A +FFRW+  Q   +H+P  ++ ++ 
Sbjct: 76  SPKLEAQLRQLLRVLSPPQVRAVLRAQARGDVRRAFEFFRWADRQWRYRHAPEVFDEMLS 135

Query: 110 LLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKH 168
           LL    L D     ++ M +  V      FA +  SY  A +++ A+    +M++ GC  
Sbjct: 136 LLSNTRLHDPARRVVRLMIRRGVRRGTEQFAQLMLSYSRAGKLRSAMRVLHLMQKDGCAP 195

Query: 169 DVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTF 227
           D+   N  ++ +   G+   A +F  R+    ++PD  TY  L++G    R V +A +  
Sbjct: 196 DISICNMAVNVLVVAGRVDKALEFAERMRRVGVEPDVYTYNCLIKGLCGARRVVDAMEMI 255

Query: 228 GEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMM-ERGCNP-GMTFFKLAFE 285
           G M ++ G  PD +  Y   +++ L     + E    L+RM  + G  P  +T+  L   
Sbjct: 256 GVM-LQNGCPPDKISYYT--VMSFLCKEKRVEEVRGLLQRMRNDAGLFPDQVTYNVLIHG 312

Query: 286 ECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAF 345
               G      EF+  +   R  FR D   Y+ ++  +C +     A +++ EM+  G  
Sbjct: 313 LAKHGHADEALEFLRESEGKR--FRVDEVGYSAIVHSFCLNGRMAEAKEIVGEMISKGCQ 370

Query: 346 PDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKF 405
           PD+ TY+ + +   +  +L +A  +   M KN+   N     A +           A + 
Sbjct: 371 PDVVTYSTVVDGFCRIGELDQARKMMKHMYKNDCKPNTVTHTALLNGLCKVGKTSEAWEL 430

Query: 406 WKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIK 465
                E   +    T ++++ G      L E+      M +KG   T   ++ L   L K
Sbjct: 431 LNKSEEEWWTPSDITYSVVMHGFRREGKLKESCDVVVQMLQKGFFPTTVEINLLIHALCK 490

Query: 466 ARKEAVYEELLKKCKA 481
            RK A  ++ +++C++
Sbjct: 491 DRKPAEAKDFMEQCQS 506



 Score = 43.9 bits (102), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 59/286 (20%), Positives = 125/286 (43%), Gaps = 19/286 (6%)

Query: 104 WNLVVDLLGKNCLFDAMWDAIK-SMKKENVLSLATFASVFSSYVVADRVKDAITTFDVME 162
           +N+++  L K+   D   + ++ S  K   +    ++++  S+ +  R+ +A      M 
Sbjct: 306 YNVLIHGLAKHGHADEALEFLRESEGKRFRVDEVGYSAIVHSFCLNGRMAEAKEIVGEMI 365

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYAILLEGWEKERDVA 221
             GC+ DV   ++++   CR G+   A + ++ +     KP+  T+  LL G  K    +
Sbjct: 366 SKGCQPDVVTYSTVVDGFCRIGELDQARKMMKHMYKNDCKPNTVTHTALLNGLCKVGKTS 425

Query: 222 NAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFK 281
            A +   +   E  W P ++    S ++   +    + E+ + + +M+++G  P      
Sbjct: 426 EAWELLNKSE-EEWWTPSDITY--SVVMHGFRREGKLKESCDVVVQMLQKGFFPTTVEIN 482

Query: 282 LAFEE-CLTGQNLRGAEFIW-----GAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKL 335
           L     C   +     +F+      G  +  + F    H ++          +  +A+ L
Sbjct: 483 LLIHALCKDRKPAEAKDFMEQCQSKGCTINVVNFTTVIHGFS-------RQGDLESALSL 535

Query: 336 LDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVL 381
           +D+M  +   PD+ TY ++ + L K  +L EA+GL  +M+ N  VL
Sbjct: 536 MDDMYLSNRHPDVVTYTVVVDALGKKGRLKEATGLVEKML-NRGVL 580


>gi|215794293|gb|ACJ70132.1| restorer-of-fertility [Brassica napus]
          Length = 667

 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 82/328 (25%), Positives = 140/328 (42%), Gaps = 45/328 (13%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           SL TF+++     V DRV +A+  F  +    CK +V A  +L++ +CR+G+ ++A   L
Sbjct: 145 SLVTFSTLLHGLCVEDRVSEALHFFHQI----CKPNVIAFTTLMNGLCREGRVVEAVALL 200

Query: 194 -RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
            R+V+  ++P+  TY  +++G  K  D  +A     +M  EV     NV  Y + +  L 
Sbjct: 201 DRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKME-EVSRIKPNVVIYSAIIDGLW 259

Query: 253 KGCDG-IYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRP 311
           K  DG   +  N    M E+G +P +                                  
Sbjct: 260 K--DGRQTDAQNLFSEMQEKGISPNL---------------------------------- 283

Query: 312 DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLF 371
               YN MI+ +C S     A +LL EM      PD+ T+++L   LVK  K +EA  L+
Sbjct: 284 --FTYNCMINGFCSSGRWSEAQRLLREMFERKMSPDVVTFSVLINALVKEGKFFEAEELY 341

Query: 372 NEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDM 431
           NEM+    + N     + +  +   +    A + +  M    CS    T ++L+ G C  
Sbjct: 342 NEMLPRGIIPNTITYNSMIDGFSKQNRLDAAERMFYLMATKGCSPDVITFSILIDGYCGA 401

Query: 432 HMLPEAVKYAKGMAEKGIQVTPFALSKL 459
             + + +K    M+ +G+       + L
Sbjct: 402 KRVDDGMKLLHEMSRRGLVANTITYTTL 429



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 75/317 (23%), Positives = 139/317 (43%), Gaps = 28/317 (8%)

Query: 150 RVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYA 208
           R  DA   F  M++ G   ++F  N +++  C  G+  +A + LR + + ++ PD  T++
Sbjct: 263 RQTDAQNLFSEMQEKGISPNLFTYNCMINGFCSSGRWSEAQRLLREMFERKMSPDVVTFS 322

Query: 209 ILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYET--VNSLK 266
           +L+    KE     A++ + EM+   G  P+ +  Y+S +       DG  +   +++ +
Sbjct: 323 VLINALVKEGKFFEAEELYNEMLPR-GIIPNTI-TYNSMI-------DGFSKQNRLDAAE 373

Query: 267 RMM----ERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISL 322
           RM      +GC+P +  F +  +     + +     +   M  R G   +T  Y  +I  
Sbjct: 374 RMFYLMATKGCSPDVITFSILIDGYCGAKRVDDGMKLLHEM-SRRGLVANTITYTTLIHG 432

Query: 323 YCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLN 382
           +C      AA+ LL EM+ +G  P++ T N L + L    KL +A  +F  M K++  L+
Sbjct: 433 FCQLGNLNAALDLLQEMISSGVCPNVVTCNTLLDGLCNNGKLKDALEMFKVMQKSKMDLD 492

Query: 383 ----HENCRAAVRVY-------MDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDM 431
                 +    V+ Y       ++      A + ++ M        + T N ++ GLC  
Sbjct: 493 ASHPFNDVEPDVQTYNILICGLINEGKFSEAEELYEEMPHRGLVPDTITYNSVIDGLCKQ 552

Query: 432 HMLPEAVKYAKGMAEKG 448
             L EA +    M  KG
Sbjct: 553 SRLDEATQMFDSMGSKG 569



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 80/375 (21%), Positives = 144/375 (38%), Gaps = 31/375 (8%)

Query: 89  RWSAYQ------LNDKHSP--YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFA 139
           RWS  Q         K SP    ++++++ L K   F    +    M    ++ +  T+ 
Sbjct: 298 RWSEAQRLLREMFERKMSPDVVTFSVLINALVKEGKFFEAEELYNEMLPRGIIPNTITYN 357

Query: 140 SVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR 199
           S+   +   +R+  A   F +M   GC  DV   + L+   C   +  D  + L  +  R
Sbjct: 358 SMIDGFSKQNRLDAAERMFYLMATKGCSPDVITFSILIDGYCGAKRVDDGMKLLHEMSRR 417

Query: 200 -IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC--D 256
            +  +  TY  L+ G+ +  ++  A     EM I  G  P+ V        TLL G   +
Sbjct: 418 GLVANTITYTTLIHGFCQLGNLNAALDLLQEM-ISSGVCPNVVTCN-----TLLDGLCNN 471

Query: 257 GIYETVNSLKRMMERG------------CNPGMTFFKLAFEECLTGQNLRGAEFIWGAMV 304
           G  +    + ++M++               P +  + +     +       AE ++  M 
Sbjct: 472 GKLKDALEMFKVMQKSKMDLDASHPFNDVEPDVQTYNILICGLINEGKFSEAEELYEEMP 531

Query: 305 GRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKL 364
            R G  PDT  YN +I   C  +    A ++ D M   G  PD+ T+  L     K  ++
Sbjct: 532 HR-GLVPDTITYNSVIDGLCKQSRLDEATQMFDSMGSKGFSPDVVTFTTLINGYCKVGRV 590

Query: 365 WEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLL 424
            +   +F EM +   V N    R  +  +    +   A+  ++ MI +     + T   +
Sbjct: 591 GDGLEVFCEMGRRGIVANAITYRTLIHGFCQVGNINGALDIFQEMISSGVYPDTITIRNM 650

Query: 425 VAGLCDMHMLPEAVK 439
           + GL     L  AV+
Sbjct: 651 LTGLWSKEELKRAVQ 665


>gi|262316879|emb|CAZ44328.1| restoring pentatricopeptide repeat protein homologue [Raphanus
           sativus]
          Length = 681

 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 106/457 (23%), Positives = 189/457 (41%), Gaps = 68/457 (14%)

Query: 31  DVPNLPPTIKTLCEIIANTPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRW 90
           ++  L   I    +++ + P P+V D      + V  E  + V+                
Sbjct: 54  EIKGLEDAIDLFSDMVRSRPLPSVIDFNKLMGVVVRMERPDLVI---------------- 97

Query: 91  SAYQ-LNDKHSP---YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLS----LATFASVF 142
           S YQ +  K  P   Y++N+++      C    +  A+ +  K   L     + TF+++ 
Sbjct: 98  SLYQKMERKQIPCDVYSFNILIKCF---CSCSKLPFALSTFGKITKLGFQPDVVTFSTLL 154

Query: 143 SSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIK 201
               V DRV +A+  F  M    C+ +V    +L++ +CR+G+ ++A   L R+V+  ++
Sbjct: 155 HGLCVEDRVSEALDLFHQM----CRPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQ 210

Query: 202 PDNDTYAILLEGWEKERDVANAKKTFGEM---------------VIEVGW-DPDNVPAYD 245
           P+  TY  +++G  K  D  +A     +M               +I+  W D  +  A++
Sbjct: 211 PNQITYGTIVDGMCKIGDTVSALNLLRKMEEMSHIKPNVVIYSAIIDGLWKDGRHSDAHN 270

Query: 246 SYLITLLKGC-----------DGI------YETVNSLKRMMERGCNPGMTFFKLAFEECL 288
            Y     KG            DG        E    L+ M+ER  NP +  +       +
Sbjct: 271 LYTEMQEKGIFPDLFTYNCMIDGFCSSGRWSEAQRLLQEMLERKINPNVVTYSALINAYV 330

Query: 289 TGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDI 348
             +    AE ++  M+ R G  P+T  YN MI  +C  N   AA  +   M   G  PD+
Sbjct: 331 KERKFFEAEELYDEMLPR-GIIPNTITYNSMIDGFCKQNRLDAAEHMFYVMATKGCSPDV 389

Query: 349 QTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKY 408
            T+N L +     +++ + + L +EM +   V +       +  +    D   A+   + 
Sbjct: 390 FTFNTLIDGYCGAKRIDDGTELLHEMTETGLVADTTTYNTLIHGFCLVGDLNAALDLSQQ 449

Query: 409 MIENH-CSDLSETGNLLVAGLCDMHMLPEAVKYAKGM 444
           MI +  C D+  T N L+ GLCD   L +A++  K M
Sbjct: 450 MISSGVCPDIV-TCNTLLDGLCDNGKLKDALEMFKAM 485



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 80/321 (24%), Positives = 143/321 (44%), Gaps = 31/321 (9%)

Query: 150 RVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYA 208
           R  DA   +  M++ G   D+F  N ++   C  G+  +A + L+ +++ +I P+  TY+
Sbjct: 264 RHSDAHNLYTEMQEKGIFPDLFTYNCMIDGFCSSGRWSEAQRLLQEMLERKINPNVVTYS 323

Query: 209 ILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRM 268
            L+  + KER    A++ + EM+   G  P+ +  Y+S +    K  + +    +    M
Sbjct: 324 ALINAYVKERKFFEAEELYDEMLPR-GIIPNTI-TYNSMIDGFCKQ-NRLDAAEHMFYVM 380

Query: 269 MERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSN 327
             +GC+P + TF  L    C   +   G E +    +   G   DT  YN +I  +C   
Sbjct: 381 ATKGCSPDVFTFNTLIDGYCGAKRIDDGTELLHE--MTETGLVADTTTYNTLIHGFCLVG 438

Query: 328 ETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCR 387
           +  AA+ L  +M+ +G  PDI T N L + L    KL +A  +F  M K+          
Sbjct: 439 DLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKS---------- 488

Query: 388 AAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEK 447
              ++ +D+  P+  ++           D+ +T N+L++GL +     EA +  K M  +
Sbjct: 489 ---KMDLDASRPFNGVE----------PDV-QTYNILISGLINEGKFLEAEELYKEMPHR 534

Query: 448 GIQVTPFALSKLKQILIKARK 468
           GI       S +   L K  +
Sbjct: 535 GIVPNTITYSSMINGLCKQSR 555



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 80/332 (24%), Positives = 132/332 (39%), Gaps = 18/332 (5%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-F 192
           S+  F  +    V  +R    I+ +  ME+     DV++ N L+   C   K   A   F
Sbjct: 76  SVIDFNKLMGVVVRMERPDLVISLYQKMERKQIPCDVYSFNILIKCFCSCSKLPFALSTF 135

Query: 193 LRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
            ++     +PD  T++ LL G   E  V+ A   F +M         NV  + + +  L 
Sbjct: 136 GKITKLGFQPDVVTFSTLLHGLCVEDRVSEALDLFHQMC------RPNVVTFTTLMNGLC 189

Query: 253 KGCDG-IYETVNSLKRMMERGCNPG-MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFR 310
           +  +G + E V  L RM+E G  P  +T+  +    C  G  +     +   M      +
Sbjct: 190 R--EGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKIGDTVSALNLLR-KMEEMSHIK 246

Query: 311 PDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGL 370
           P+  +Y+ +I           A  L  EM   G FPD+ TYN + +      +  EA  L
Sbjct: 247 PNVVIYSAIIDGLWKDGRHSDAHNLYTEMQEKGIFPDLFTYNCMIDGFCSSGRWSEAQRL 306

Query: 371 FNEMVK---NENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAG 427
             EM++   N NV+ +    A +  Y+     + A + +  M+       + T N ++ G
Sbjct: 307 LQEMLERKINPNVVTYS---ALINAYVKERKFFEAEELYDEMLPRGIIPNTITYNSMIDG 363

Query: 428 LCDMHMLPEAVKYAKGMAEKGIQVTPFALSKL 459
            C  + L  A      MA KG     F  + L
Sbjct: 364 FCKQNRLDAAEHMFYVMATKGCSPDVFTFNTL 395



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 64/240 (26%), Positives = 98/240 (40%), Gaps = 31/240 (12%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RV 195
           T+ S+   +   +R+  A   F VM   GC  DVF  N+L+   C   +  D  + L  +
Sbjct: 356 TYNSMIDGFCKQNRLDAAEHMFYVMATKGCSPDVFTFNTLIDGYCGAKRIDDGTELLHEM 415

Query: 196 VDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG- 254
            +  +  D  TY  L+ G+    D+ NA     + +I  G  PD V        TLL G 
Sbjct: 416 TETGLVADTTTYNTLIHGFCLVGDL-NAALDLSQQMISSGVCPDIVTCN-----TLLDGL 469

Query: 255 CDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTH 314
           CD        LK  +E         FK           ++ ++    A     G  PD  
Sbjct: 470 CDN-----GKLKDALE--------MFK----------AMQKSKMDLDASRPFNGVEPDVQ 506

Query: 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
            YN++IS      +   A +L  EM + G  P+  TY+ +   L K  +L EA+ +F+ M
Sbjct: 507 TYNILISGLINEGKFLEAEELYKEMPHRGIVPNTITYSSMINGLCKQSRLDEATQMFDSM 566



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 57/256 (22%), Positives = 98/256 (38%), Gaps = 18/256 (7%)

Query: 132 VLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ 191
           V    T+ ++   + +   +  A+     M   G   D+   N+LL  +C +GK  DA +
Sbjct: 421 VADTTTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALE 480

Query: 192 FLRVVD------------GRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPD 239
             + +               ++PD  TY IL+ G   E     A++ + EM    G  P+
Sbjct: 481 MFKAMQKSKMDLDASRPFNGVEPDVQTYNILISGLINEGKFLEAEELYKEMP-HRGIVPN 539

Query: 240 NVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGM-TFFKLAFEECLTGQNLRGAEF 298
            +  Y S +  L K    + E       M  +  +P + TF  L    C  G+   G E 
Sbjct: 540 TI-TYSSMINGLCKQ-SRLDEATQMFDSMGSKSFSPDVVTFNTLVSGYCKAGRVDDGLEL 597

Query: 299 IWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFL 358
                +GR G   D   Y  +I  +        A+ +  EM+ +G +PD  T   +   L
Sbjct: 598 F--CEMGRRGIVADAITYITLIHGFRKVGNINGALDIFQEMISSGVYPDTITIRSMLTVL 655

Query: 359 VKGRKLWEASGLFNEM 374
               +L  A  +  ++
Sbjct: 656 WSKEELKRAVAMLEDL 671


>gi|255581786|ref|XP_002531694.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223528670|gb|EEF30685.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 821

 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 90/361 (24%), Positives = 163/361 (45%), Gaps = 26/361 (7%)

Query: 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDV 160
           Y++N ++  LGK  +  +  +    +    V  SL TF ++ +      +V++A+  F+ 
Sbjct: 163 YSFNTLLLQLGKFDMVTSAQNVYAQIFSSGVKPSLLTFNTMINILCKKGKVQEAVLVFNK 222

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERD 219
           + Q+    D F   SL+   CR+ K   A++ F R+V     P++ TY+ L+ G   E  
Sbjct: 223 IFQFDLCPDAFTYTSLILGHCRNRKLDKAFEVFDRMVKDGCNPNSVTYSTLINGLCNEGR 282

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD--GIYETVNSLKRMMERGCNPGM 277
           +  A     EM  E G +    P   +Y + +   CD   + + +N ++ M ++GC+P +
Sbjct: 283 IGEAMDMLEEMT-EKGIE----PTVYTYTVPISSLCDIGRVDDAINLVRSMGKKGCSPSV 337

Query: 278 TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLD 337
             +            +  A  ++  M+ + G  P+T  YN +I+  C     G A+K+ D
Sbjct: 338 QTYTAIISGLFRAGKMELAIGMYHKML-KEGLVPNTVTYNALINELCTEGRFGIALKIFD 396

Query: 338 EMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNE--------NVLNHENCRAA 389
            M  +G   + QTYN + + L     + +A  +FN+M+K+         N L  EN +  
Sbjct: 397 WMEGHGTLANAQTYNQIIKGLFGMDDIEKAMVVFNKMLKDGPSPTVVTYNTLIVENLK-- 454

Query: 390 VRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
            R Y+++     A +F   M E++C     T   L++G C    L  A  +   M + GI
Sbjct: 455 -RGYLNN-----ATRFLYMMKESNCEPDERTYCELISGFCKGGKLDSATSFFYEMLKCGI 508

Query: 450 Q 450
            
Sbjct: 509 S 509



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 86/368 (23%), Positives = 146/368 (39%), Gaps = 41/368 (11%)

Query: 118 DAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSL 176
           D   + ++SM K+    S+ T+ ++ S    A +++ AI  +  M + G   +    N+L
Sbjct: 319 DDAINLVRSMGKKGCSPSVQTYTAIISGLFRAGKMELAIGMYHKMLKEGLVPNTVTYNAL 378

Query: 177 LSAICRDGKTIDAWQFLRVVDGRIKPDN-DTYAILLEGWEKERDVANAKKTFGEMVIEVG 235
           ++ +C +G+   A +    ++G     N  TY  +++G     D+  A   F +M+ + G
Sbjct: 379 INELCTEGRFGIALKIFDWMEGHGTLANAQTYNQIIKGLFGMDDIEKAMVVFNKMLKD-G 437

Query: 236 WDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMM-ERGCNPG-MTFFKLAFEECLTGQNL 293
             P  V  Y++ ++  LK   G          MM E  C P   T+ +L    C  G+  
Sbjct: 438 PSP-TVVTYNTLIVENLK--RGYLNNATRFLYMMKESNCEPDERTYCELISGFCKGGKLD 494

Query: 294 RGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNI 353
               F +  +  + G  P+   Y  MI  YC   +   A+ L + M  NG    I+TYN 
Sbjct: 495 SATSFFYEML--KCGISPNQWTYTAMIDGYCKEGKIDVALSLFERMEENGCSASIETYNA 552

Query: 354 LFEFLVKGRKLWEA-------------------SGLFNEMVKNENV---------LNHEN 385
           +   L KG +  EA                   + L N + KN            +  +N
Sbjct: 553 IISGLSKGNRFSEAEKFCAKMTEQGLQPNTITYTSLINGLCKNTATNLAFKIFHEMEKKN 612

Query: 386 CRAAVRVYMDSDDPYVA---IKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAK 442
           C      Y            +   + + EN C    +T + LV+GLC      EA +  +
Sbjct: 613 CLPNAHTYTSLIYGLCQEGKVDAAERLTENGCEPTIDTYSTLVSGLCREGRSNEASQLVE 672

Query: 443 GMAEKGIQ 450
            M EKG+ 
Sbjct: 673 NMKEKGLS 680



 Score = 45.4 bits (106), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 39/181 (21%), Positives = 76/181 (41%), Gaps = 4/181 (2%)

Query: 302 AMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKG 361
           A +   G +P    +N MI++ C   +   A+ + +++      PD  TY  L     + 
Sbjct: 186 AQIFSSGVKPSLLTFNTMINILCKKGKVQEAVLVFNKIFQFDLCPDAFTYTSLILGHCRN 245

Query: 362 RKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETG 421
           RKL +A  +F+ MVK+    N       +    +      A+   + M E        T 
Sbjct: 246 RKLDKAFEVFDRMVKDGCNPNSVTYSTLINGLCNEGRIGEAMDMLEEMTEKGIEPTVYTY 305

Query: 422 NLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKE----AVYEELLK 477
            + ++ LCD+  + +A+   + M +KG   +    + +   L +A K      +Y ++LK
Sbjct: 306 TVPISSLCDIGRVDDAINLVRSMGKKGCSPSVQTYTAIISGLFRAGKMELAIGMYHKMLK 365

Query: 478 K 478
           +
Sbjct: 366 E 366


>gi|297806221|ref|XP_002870994.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316831|gb|EFH47253.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 819

 Score = 98.2 bits (243), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 84/337 (24%), Positives = 148/337 (43%), Gaps = 6/337 (1%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKEN-VLSLATFASVFSSYVVADRVKDAITTFDVM 161
            WN ++ + G+N +   +    K MK+   V    TF ++ S+Y      + A+T +  M
Sbjct: 456 TWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRM 515

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERDV 220
              G   D+   N++L+A+ R G    + + L  + DGR KP+  TY  LL  +   +++
Sbjct: 516 LDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYANGKEI 575

Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFF 280
                +  E V     +P  V      L+ +   CD + E   +   + ERG +P +T  
Sbjct: 576 G-LMHSLAEEVYSGVIEPRAVLL--KTLVLVCSKCDLLPEAERAFSELKERGFSPDITTL 632

Query: 281 KLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMV 340
                     Q +  A  +   M  R GF P    YN ++ ++  S + G + ++L E++
Sbjct: 633 NSMVSIYGRRQMVGKANEVLDYMKER-GFTPSMATYNSLMYMHSRSADFGKSEEILREIL 691

Query: 341 YNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPY 400
             G  PDI +YN +     +  ++ +AS +F+EM  +  V +       +  Y       
Sbjct: 692 AKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRDSGIVPDVITYNTFIGSYAADSMFE 751

Query: 401 VAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEA 437
            AI   +YMI++ C     T N +V G C ++   EA
Sbjct: 752 EAIGVVRYMIKHGCRPNQNTYNSIVDGYCKLNRKDEA 788



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 80/373 (21%), Positives = 146/373 (39%), Gaps = 44/373 (11%)

Query: 106 LVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASVFSSYVVADRVKDAITTFDVMEQY 164
           +V+ +LGK     +  +    ++++   L + ++ S+ S++  + R ++A+  F  ME+ 
Sbjct: 178 IVISMLGKEGRVSSAANLFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEEE 237

Query: 165 GCKHDVFALN-----------------SLLSAICRDGKTIDAWQFLRVVD---------- 197
           GCK  +   N                 SL+  +  DG   DA+ +  ++           
Sbjct: 238 GCKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQE 297

Query: 198 ----------GRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSY 247
                          D  TY  LL+ + K      A K   EM +  G+ P ++  Y+S 
Sbjct: 298 AAQVFEEMKAAGFSHDKVTYNALLDVYGKSHRPKEAMKVLNEMELN-GFSP-SIVTYNSL 355

Query: 248 LITLLKGCDGIYETVNSLK-RMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGR 306
           +    +  DG+ +    LK +M E+G  P +  +            +  A  I+  M   
Sbjct: 356 ISAYAR--DGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMNIFEEMRN- 412

Query: 307 IGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWE 366
            G +P+   +N  I +Y    +    MK+ DE+   G  PDI T+N L     +     E
Sbjct: 413 AGCKPNICTFNAFIKMYGNRGKFVDMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSE 472

Query: 367 ASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVA 426
            SG+F EM +   V   E     +  Y        A+  ++ M++   +    T N ++A
Sbjct: 473 VSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLA 532

Query: 427 GLCDMHMLPEAVK 439
            L    M  ++ K
Sbjct: 533 ALARGGMWEQSEK 545



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 71/263 (26%), Positives = 107/263 (40%), Gaps = 42/263 (15%)

Query: 115 CLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALN 174
           C FD  W  +K    +++L  +  A V S      RV  A   F+ +++ G   DV++  
Sbjct: 156 CAFD--W-FMKQKDYQSMLDNSVIAIVISMLGKEGRVSSAANLFNGLQEDGFSLDVYSYT 212

Query: 175 SLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIE 233
           SL+SA    G+  +A   F ++ +   KP   TY ++L  + K     N   +  E +  
Sbjct: 213 SLISAFANSGRYREAVNVFKKMEEEGCKPTLITYNVILNVFGKMGTPWNKITSLVEKMKS 272

Query: 234 VGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNL 293
            G  PD   AY                T N+L    +RG         L  E     + +
Sbjct: 273 DGIAPD---AY----------------TYNTLITCCKRG--------SLHQEAAQVFEEM 305

Query: 294 RGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNI 353
           + A           GF  D   YN ++ +Y  S+    AMK+L+EM  NG  P I TYN 
Sbjct: 306 KAA-----------GFSHDKVTYNALLDVYGKSHRPKEAMKVLNEMELNGFSPSIVTYNS 354

Query: 354 LFEFLVKGRKLWEASGLFNEMVK 376
           L     +   L EA  L N+M +
Sbjct: 355 LISAYARDGMLDEAMELKNQMAE 377


>gi|224145304|ref|XP_002336216.1| predicted protein [Populus trichocarpa]
 gi|222832672|gb|EEE71149.1| predicted protein [Populus trichocarpa]
          Length = 616

 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 85/359 (23%), Positives = 155/359 (43%), Gaps = 50/359 (13%)

Query: 133 LSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQF 192
           L++ TF ++ +      +   A+  FD M   G + DV    ++++ +C+ G+T+ A   
Sbjct: 190 LTIVTFNTLINGLCKVGKFGQAVELFDDMVARGYQPDVHTYTTIINGLCKIGETVAAAGL 249

Query: 193 LRVV-DGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSY---- 247
            R + +   +PD  TY+ +++   K+R V  A   F  M  + G  P N+  Y+S     
Sbjct: 250 FRKMGEAGCQPDVVTYSTIIDSLCKDRRVNEALDIFSYMKAK-GISP-NIFTYNSLIQGL 307

Query: 248 ------------------------------LITLLKGCDGIYETVNSLKRMMERGCNPGM 277
                                         LI +      ++E    LK M E G  P +
Sbjct: 308 CNFSRWREASAMLNEMMSLNIMPNIVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNV 367

Query: 278 TFFKLAFEECLTGQNLRG----AEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAM 333
               + +   + G +L+     A  ++  M+ + G +PD   YN++I+ YC +   G A 
Sbjct: 368 ----VTYSSLMNGYSLQAEVVEARKLFDVMITK-GCKPDVFSYNILINGYCKAKRIGEAK 422

Query: 334 KLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVY 393
           +L +EM++ G  PDI +YN L + L +  +L EA  LF  M+ N N+   + C  ++ + 
Sbjct: 423 QLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTNGNL--PDLCTYSILLD 480

Query: 394 MDSDDPYV--AIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQ 450
                 Y+  A + ++ M   +        N+L+  +C    L EA K    +  +G+Q
Sbjct: 481 GFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDAMCKSRNLKEARKLFSELFVQGLQ 539



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 71/290 (24%), Positives = 128/290 (44%), Gaps = 6/290 (2%)

Query: 124 IKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICR 182
           +  M   N++ ++ TF+ + + +     V +A      M + G + +V   +SL++    
Sbjct: 320 LNEMMSLNIMPNIVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSL 379

Query: 183 DGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNV 241
             + ++A +   V+  +  KPD  +Y IL+ G+ K + +  AK+ F EM I  G  PD +
Sbjct: 380 QAEVVEARKLFDVMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEM-IHQGLTPD-I 437

Query: 242 PAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWG 301
            +Y++ LI  L     + E  +  K M+  G  P +  + +  +       L  A  ++ 
Sbjct: 438 VSYNT-LIDGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFR 496

Query: 302 AMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKG 361
           AM      +P+  MYN++I   C S     A KL  E+   G  P++Q Y  +   L K 
Sbjct: 497 AMQSTY-LKPNMVMYNILIDAMCKSRNLKEARKLFSELFVQGLQPNVQIYTTIINGLCKE 555

Query: 362 RKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIE 411
             L EA   F  M ++    N  +    +R ++   D   A++    M E
Sbjct: 556 GLLDEALEAFRNMEEDGCPPNEFSYNVIIRGFLQHKDESRAVQLIGEMRE 605



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 74/331 (22%), Positives = 131/331 (39%), Gaps = 8/331 (2%)

Query: 151 VKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL--RVVDGRIKPDNDTYA 208
           + DA+  F+ M     +  +   N LLSAI +     DA   L  ++    + PD  T  
Sbjct: 102 IDDALAYFNHMLHRKPRPCIIQFNKLLSAIVKMRHYHDAVISLSKQMELAGLSPDTYTLH 161

Query: 209 ILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRM 268
           +L+  + + + V        + +I++G     +  +++ LI  L       + V     M
Sbjct: 162 MLINCFFQLQRVDLGFSVLAK-IIKLGLQL-TIVTFNT-LINGLCKVGKFGQAVELFDDM 218

Query: 269 MERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSN 327
           + RG  P + T+  +    C  G+ +  A       +G  G +PD   Y+ +I   C   
Sbjct: 219 VARGYQPDVHTYTTIINGLCKIGETVAAAGLFRK--MGEAGCQPDVVTYSTIIDSLCKDR 276

Query: 328 ETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCR 387
               A+ +   M   G  P+I TYN L + L    +  EAS + NEM+    + N     
Sbjct: 277 RVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFS 336

Query: 388 AAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEK 447
             + ++    + + A    K M E        T + L+ G      + EA K    M  K
Sbjct: 337 LLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVVEARKLFDVMITK 396

Query: 448 GIQVTPFALSKLKQILIKARKEAVYEELLKK 478
           G +   F+ + L     KA++    ++L  +
Sbjct: 397 GCKPDVFSYNILINGYCKAKRIGEAKQLFNE 427


>gi|449451896|ref|XP_004143696.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Cucumis sativus]
          Length = 1032

 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 86/327 (26%), Positives = 149/327 (45%), Gaps = 24/327 (7%)

Query: 100 SPYAWNLVV-------DLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVK 152
           SP+ +++++       DL   N + D M   I++  K NV     + ++  +YV   R +
Sbjct: 450 SPFTYSVLISGLCHSSDLQKANEVLDQM---IRNGVKPNVF---MYGTLIKAYVQESRYE 503

Query: 153 DAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR--IKPDNDTYAIL 210
            AI    +M   G   D+F  N L+  +CR  K ++  + L V  G   IKP+  TY   
Sbjct: 504 MAIELLKIMIANGVLPDLFCYNCLIIGLCR-AKKVEEAKMLLVDMGEKGIKPNAHTYGAF 562

Query: 211 LEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD--GIYETVNSLKRM 268
           +  + K  ++  A++ F +M +  G  P+NV     Y I +   CD     E +++ K M
Sbjct: 563 INLYSKSGEIQVAERYFKDM-LSSGIVPNNVI----YTILIKGHCDVGNTVEALSTFKCM 617

Query: 269 MERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNE 328
           +E+G  P +  +             + A  ++   + + G  PD  +YN +IS +C   +
Sbjct: 618 LEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFL-KTGVVPDVFLYNSLISGFCKEGD 676

Query: 329 TGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRA 388
              A +L DEM++NG  P+I  YN L   L K  ++ +A  LF+E+ + + V +      
Sbjct: 677 IEKASQLYDEMLHNGINPNIVVYNTLINGLCKLGEVTKARELFDEIEEKDLVPDVVTYST 736

Query: 389 AVRVYMDSDDPYVAIKFWKYMIENHCS 415
            +  Y  S +   A K +  MI    S
Sbjct: 737 IIDGYCKSGNLTEAFKLFDEMISKGIS 763



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 87/349 (24%), Positives = 158/349 (45%), Gaps = 10/349 (2%)

Query: 105 NLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYV-VADRVKDAITTFDVME 162
           NL+ DLL  N +    W    SM +  ++  + T+ +V  ++  V D +K  +   ++ +
Sbjct: 212 NLMRDLLKAN-MMGLFWKVYGSMVEAKIVPDVYTYTNVIKAHCKVGDVIKGKMVLSEMEK 270

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV-DGRIKPDNDTYAILLEGWEKERDVA 221
           +  CK ++F  N+ +  +C+ G   +A +  +++ +  + PD  TY +L++G+ K++   
Sbjct: 271 E--CKPNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSK 328

Query: 222 NAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFK 281
            AK  F E +   G +P N   Y + +   +K  + I E +     M+ RG    +  + 
Sbjct: 329 EAKLIF-ESMPSSGLNP-NRFTYTALIDGFIKEGN-IEEALRIKDEMITRGLKLNVVTYN 385

Query: 282 LAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVY 341
                      +  A  ++  M+   G  PDT  YN++I  Y  S++   A +LL EM  
Sbjct: 386 AMIGGIAKAGEMAKAMSLFNEML-MAGLEPDTWTYNLLIDGYLKSHDMAKACELLAEMKA 444

Query: 342 NGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYV 401
               P   TY++L   L     L +A+ + ++M++N    N       ++ Y+      +
Sbjct: 445 RKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEM 504

Query: 402 AIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQ 450
           AI+  K MI N         N L+ GLC    + EA      M EKGI+
Sbjct: 505 AIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIK 553



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 82/317 (25%), Positives = 139/317 (43%), Gaps = 11/317 (3%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           T+  +   +    R K+A   F+ M   G   + F   +L+    ++G   +A   LR+ 
Sbjct: 313 TYTLLVDGFCKQKRSKEAKLIFESMPSSGLNPNRFTYTALIDGFIKEGNIEEA---LRIK 369

Query: 197 DGRI----KPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
           D  I    K +  TY  ++ G  K  ++A A   F EM++  G +PD    Y+  +   L
Sbjct: 370 DEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLM-AGLEPDTW-TYNLLIDGYL 427

Query: 253 KGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD 312
           K  D + +    L  M  R   P    + +         +L+ A  +   M+ R G +P+
Sbjct: 428 KSHD-MAKACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMI-RNGVKPN 485

Query: 313 THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFN 372
             MY  +I  Y   +    A++LL  M+ NG  PD+  YN L   L + +K+ EA  L  
Sbjct: 486 VFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLV 545

Query: 373 EMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMH 432
           +M +     N     A + +Y  S +  VA +++K M+ +     +    +L+ G CD+ 
Sbjct: 546 DMGEKGIKPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVG 605

Query: 433 MLPEAVKYAKGMAEKGI 449
              EA+   K M EKG+
Sbjct: 606 NTVEALSTFKCMLEKGL 622



 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 79/356 (22%), Positives = 142/356 (39%), Gaps = 12/356 (3%)

Query: 127 MKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKT 186
           ++K  +  +  ++++  S     + K+A+  F    + G   DVF  NSL+S  C++G  
Sbjct: 618 LEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDI 677

Query: 187 IDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYD 245
             A Q    ++   I P+   Y  L+ G  K  +V  A++ F E+      + D VP   
Sbjct: 678 EKASQLYDEMLHNGINPNIVVYNTLINGLCKLGEVTKARELFDEI-----EEKDLVPDVV 732

Query: 246 SYLITLLKGCDG--IYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGA-EFIWGA 302
           +Y   +   C    + E       M+ +G +P    + +  + C    NL  A      A
Sbjct: 733 TYSTIIDGYCKSGNLTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSLFHEA 792

Query: 303 MVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGR 362
               +G       +N +I  +C   +   A +L D+MV     P+I TY IL +   K  
Sbjct: 793 QQKSVG---SLSAFNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAE 849

Query: 363 KLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGN 422
            + EA  LF +M     + N     + +  Y    + +  I  +K M     +  +    
Sbjct: 850 MMEEAEQLFLDMETRNIIPNTLTYTSLLLSYNQIGNRFKMISLFKDMEARGIACDAIAYG 909

Query: 423 LLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKK 478
           ++ +  C      EA+K       +GI++       L   L K ++ +   ELL +
Sbjct: 910 VMASAYCKEGKSLEALKLLNKSLVEGIKLEDDVFDALIFHLCKEKQISTVLELLSE 965



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 99/222 (44%), Gaps = 40/222 (18%)

Query: 153 DAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILL 211
           +A++TF  M + G   D+ A ++++ ++ ++GKT +A   FL+ +   + PD   Y  L+
Sbjct: 609 EALSTFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLI 668

Query: 212 EGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMER 271
            G+ KE D+  A + + EM +  G +P N+  Y++               +N L ++ E 
Sbjct: 669 SGFCKEGDIEKASQLYDEM-LHNGINP-NIVVYNTL--------------INGLCKLGE- 711

Query: 272 GCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGA 331
                +T  +  F+E                 +      PD   Y+ +I  YC S     
Sbjct: 712 -----VTKARELFDE-----------------IEEKDLVPDVVTYSTIIDGYCKSGNLTE 749

Query: 332 AMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNE 373
           A KL DEM+  G  PD   Y IL +   K   L +A  LF+E
Sbjct: 750 AFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSLFHE 791



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 58/239 (24%), Positives = 100/239 (41%), Gaps = 40/239 (16%)

Query: 172  ALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEM 230
            A NSL+ + C+ GK I+A + F  +VD ++ P+  TY IL++ + K   +  A++ F +M
Sbjct: 802  AFNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDM 861

Query: 231  VIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTG 290
              E      N   Y S L++        Y  + +  +M+        + FK         
Sbjct: 862  --ETRNIIPNTLTYTSLLLS--------YNQIGNRFKMI--------SLFK--------- 894

Query: 291  QNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQT 350
                        M  R G   D   Y +M S YC   ++  A+KLL++ +  G   +   
Sbjct: 895  -----------DMEAR-GIACDAIAYGVMASAYCKEGKSLEALKLLNKSLVEGIKLEDDV 942

Query: 351  YNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYM 409
            ++ L   L K +++     L +EM K E  L+ + C   +  +  S +   A K    M
Sbjct: 943  FDALIFHLCKEKQISTVLELLSEMGKEELSLSSKTCNTLLLGFYKSGNEDEASKVLGVM 1001



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 76/392 (19%), Positives = 148/392 (37%), Gaps = 59/392 (15%)

Query: 87  FFRWSAYQLNDKHSPYAWNLVVDLLGKNCLF---DAMWDAIKSMKKENVLSLATFA---- 139
           FF WS+ +++     ++++++   L  + L    D M + +   +K  +  L +      
Sbjct: 106 FFYWSSSKMSTPQYLHSYSILAIRLCNSGLIHQADNMLEKLLQTRKPPLEILDSLVRCYR 165

Query: 140 -------SVFSSYVVADRV----KDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTID 188
                  +VF  ++   RV     +A + F      G    +   N+L+  + +      
Sbjct: 166 EFGGSNLTVFDIFIDKFRVLGFLNEASSVFIASISEGFFPTLICCNNLMRDLLKANMMGL 225

Query: 189 AWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSY 247
            W+ +  +V+ +I PD  TY  +++   K  DV   K    EM  E      N+  Y+++
Sbjct: 226 FWKVYGSMVEAKIVPDVYTYTNVIKAHCKVGDVIKGKMVLSEMEKEC---KPNLFTYNAF 282

Query: 248 LITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRI 307
           +  L +    + E +   K MME+G                                   
Sbjct: 283 IGGLCQ-TGAVDEALEVKKLMMEKG----------------------------------- 306

Query: 308 GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEA 367
              PD H Y +++  +C    +  A  + + M  +G  P+  TY  L +  +K   + EA
Sbjct: 307 -LGPDGHTYTLLVDGFCKQKRSKEAKLIFESMPSSGLNPNRFTYTALIDGFIKEGNIEEA 365

Query: 368 SGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAG 427
             + +EM+     LN     A +     + +   A+  +  M+       + T NLL+ G
Sbjct: 366 LRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGLEPDTWTYNLLIDG 425

Query: 428 LCDMHMLPEAVKYAKGMAEKGIQVTPFALSKL 459
               H + +A +    M  + +  +PF  S L
Sbjct: 426 YLKSHDMAKACELLAEMKARKLTPSPFTYSVL 457


>gi|225189439|emb|CAR70003.1| pentatricopeptide repeat(PPR)-containing protein At1g12700
           [Arabidopsis thaliana]
          Length = 602

 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 87/346 (25%), Positives = 155/346 (44%), Gaps = 12/346 (3%)

Query: 99  HSPYAWNLVVDLLGKNCLFDAMWDAI-KSMKKENVLSLATFASVFSSYVVADRVKDAITT 157
           H+ Y  N++++   + C     +  + K MK        TF ++ +   +  +V  A+  
Sbjct: 121 HNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLINGLCLEGKVSKAVVL 180

Query: 158 FDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEK 216
            D M + GC+ D+   NS+++ ICR G T  A+  LR ++ R +K D  TY+ +++   +
Sbjct: 181 VDRMVENGCQPDMVTYNSIVNGICRSGDTSLAFDMLRKMEERNVKADVFTYSTIIDSLCR 240

Query: 217 ERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC---DGIYETVNSLKRMMERGC 273
           +  +  A   F EM  E      +V  Y+S +  L K     DG       LK M+ R  
Sbjct: 241 DGCIDAAISLFKEM--ETKGIKSSVVTYNSLVRGLCKAGKWNDGAL----LLKDMVSREI 294

Query: 274 NPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAM 333
            P +  F +  +  +    L+ A  ++  M+ R G  P+   YN ++  YC  N    A 
Sbjct: 295 VPNVITFNVLLDVFVKEGKLQEANELYKEMITR-GISPNIITYNTLMDGYCMQNRLSEAN 353

Query: 334 KLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVY 393
            +LD MV N   PDI T+  L +     +++ +   +F  + K   V N       V+ +
Sbjct: 354 NMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGF 413

Query: 394 MDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVK 439
             S    +A + ++ M+ +       T  +L+ GLCD   L +A++
Sbjct: 414 CQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALE 459



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 74/264 (28%), Positives = 131/264 (49%), Gaps = 14/264 (5%)

Query: 121 WDAIKSMKKENVLS-LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSA 179
           +D ++ M++ NV + + T++++  S      +  AI+ F  ME  G K  V   NSL+  
Sbjct: 213 FDMLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRG 272

Query: 180 ICRDGKTIDAWQFLR-VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDP 238
           +C+ GK  D    L+ +V   I P+  T+ +LL+ + KE  +  A + + EM+   G  P
Sbjct: 273 LCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITR-GISP 331

Query: 239 DNVPAYDSYLITLLKG-C--DGIYETVNSLKRMMERGCNPGM-TFFKLAFEECLTGQNLR 294
            N+  Y+    TL+ G C  + + E  N L  M+   C+P + TF  L    C+  +   
Sbjct: 332 -NIITYN----TLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDD 386

Query: 295 GAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNIL 354
           G +      + + G   +   Y++++  +C S +   A +L  EMV +G  PD+ TY IL
Sbjct: 387 GMKVFRN--ISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGIL 444

Query: 355 FEFLVKGRKLWEASGLFNEMVKNE 378
            + L    KL +A  +F ++ K++
Sbjct: 445 LDGLCDNGKLEKALEIFEDLQKSK 468



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 87/385 (22%), Positives = 160/385 (41%), Gaps = 18/385 (4%)

Query: 112 GKNCLFDAMWDAIKSMKKENVLSL-------------ATFASVFSSYVVADRVKDAITTF 158
           G  C  + +   I  +KK++ ++L               F+  FS+     +    +   
Sbjct: 52  GNVCFRERLRSGIVDIKKDDAIALFQEMIRSRPLPGLVDFSRFFSAIARTKQFNLVLDFC 111

Query: 159 DVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKE 217
             +E  G  H+++ LN +++  CR  KT  A+  L +V+    +PD  T+  L+ G   E
Sbjct: 112 KQLELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLINGLCLE 171

Query: 218 RDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGM 277
             V+ A      MV E G  PD V  Y+S +  + +  D      + L++M ER     +
Sbjct: 172 GKVSKAVVLVDRMV-ENGCQPDMV-TYNSIVNGICRSGDTSL-AFDMLRKMEERNVKADV 228

Query: 278 TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLD 337
             +    +       +  A  ++  M  + G +     YN ++   C + +      LL 
Sbjct: 229 FTYSTIIDSLCRDGCIDAAISLFKEMETK-GIKSSVVTYNSLVRGLCKAGKWNDGALLLK 287

Query: 338 EMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSD 397
           +MV     P++ T+N+L +  VK  KL EA+ L+ EM+      N       +  Y   +
Sbjct: 288 DMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQN 347

Query: 398 DPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALS 457
               A      M+ N CS    T   L+ G C +  + + +K  + ++++G+       S
Sbjct: 348 RLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYS 407

Query: 458 KLKQILIKARKEAVYEELLKKCKAH 482
            L Q   ++ K  + EEL ++  +H
Sbjct: 408 ILVQGFCQSGKIKLAEELFQEMVSH 432



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 57/244 (23%), Positives = 110/244 (45%), Gaps = 9/244 (3%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           ++ T+ ++   Y + +R+ +A    D+M +  C  D+    SL+   C   +  D  +  
Sbjct: 332 NIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVF 391

Query: 194 RVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
           R +  R +  +  TY+IL++G+ +   +  A++ F EMV   G  PD +    +Y I L 
Sbjct: 392 RNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSH-GVLPDVM----TYGILLD 446

Query: 253 KGCDG--IYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFR 310
             CD   + + +   + + +   + G+  +    E    G  +  A  ++ ++  + G +
Sbjct: 447 GLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCK-GVK 505

Query: 311 PDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGL 370
           P+   Y +MIS  C       A  LL +M  +G  P+  TYN L    ++   L  ++ L
Sbjct: 506 PNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKL 565

Query: 371 FNEM 374
             EM
Sbjct: 566 IEEM 569



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 50/231 (21%), Positives = 96/231 (41%), Gaps = 11/231 (4%)

Query: 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FL 193
           + TF S+   Y +  RV D +  F  + + G   +    + L+   C+ GK   A + F 
Sbjct: 368 IVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQ 427

Query: 194 RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMV---IEVGWDPDNVPAYDSYLIT 250
            +V   + PD  TY ILL+G      +  A + F ++    +++G     +  Y + +  
Sbjct: 428 EMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLG-----IVMYTTIIEG 482

Query: 251 LLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFR 310
           + KG   + +  N    +  +G  P +  + +         +L  A  +   M    G  
Sbjct: 483 MCKG-GKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKM-EEDGNA 540

Query: 311 PDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKG 361
           P+   YN +I  +    +  A+ KL++EM   G   D  +  ++ + L+ G
Sbjct: 541 PNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVIDMLLSG 591


>gi|125539937|gb|EAY86332.1| hypothetical protein OsI_07707 [Oryza sativa Indica Group]
          Length = 584

 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 94/412 (22%), Positives = 171/412 (41%), Gaps = 42/412 (10%)

Query: 77  SYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLA 136
            Y   G      RW A +  ++ +     L+  L G+    +A+    + +++  V  + 
Sbjct: 137 GYCGAGQVDAARRWCAERAVERDAYTCDTLIRGLCGRGRTANALAVLDEMLRRRCVPDVV 196

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           T+  +  +       K A+   D M   GC  D+   N +++ IC++G+  DA +FL+ +
Sbjct: 197 TYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNL 256

Query: 197 DG-RIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
                +P+  +Y I+L+G        +A++  GEM  + G  P NV  ++  +  L +  
Sbjct: 257 PSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMG-QKGC-PPNVVTFNMLISFLCR-- 312

Query: 256 DGIYE-TVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTH 314
            G+ E  +  L+++ + GC+P    +          + +  A      MV R G  PD  
Sbjct: 313 KGLVEPALEVLEQIPKYGCSPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSR-GCYPDIV 371

Query: 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
            YN +++  C S E   A++LL ++   G  P + +YN + + L K  K  EA  L NEM
Sbjct: 372 SYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEM 431

Query: 375 VK---NENVLNHEN-----CRA-----AVRVYMDSDD----------------------P 399
           V      +++ +       CR      A+R +    D                       
Sbjct: 432 VSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRET 491

Query: 400 YVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQV 451
           + AI  + YMI N C     T  +L+ GL    ++ EA      +  +G ++
Sbjct: 492 HSAIDLFAYMIGNGCMPNESTYTILIEGLAYEGLIKEARDLLDELCSRGEEI 543



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 73/281 (25%), Positives = 117/281 (41%), Gaps = 39/281 (13%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           ++  V      A+R +DA      M Q GC  +V   N L+S +CR G    A + L  +
Sbjct: 267 SYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQI 326

Query: 197 DG-RIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL--- 252
                 P++ +Y  LL  + K++ +  A   F ++++  G  PD V +Y++ L  L    
Sbjct: 327 PKYGCSPNSLSYNPLLHAFCKQKKMDKAM-AFLDLMVSRGCYPDIV-SYNTLLTALCRSG 384

Query: 253 --------------KGC-----------DGIY------ETVNSLKRMMERGCNPGMTFFK 281
                         KGC           DG+       E +  L  M+ +G  P +  + 
Sbjct: 385 EVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYS 444

Query: 282 LAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVY 341
                      +  A   +G  V  +G RP+T +YN +I   C   ET +A+ L   M+ 
Sbjct: 445 TIAAGLCREDRIEDAIRAFGK-VQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIG 503

Query: 342 NGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV-KNENVL 381
           NG  P+  TY IL E L     + EA  L +E+  + E +L
Sbjct: 504 NGCMPNESTYTILIEGLAYEGLIKEARDLLDELCSRGEEIL 544



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 75/315 (23%), Positives = 123/315 (39%), Gaps = 44/315 (13%)

Query: 167 KHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERDVANAKK 225
           + D +  ++L+  +C  G+T +A   L  ++  R  PD  TY ILLE   K      A K
Sbjct: 157 ERDAYTCDTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMK 216

Query: 226 TFGEMVIEVGWDPDNVPAYDSYLITLLKGCD--GIYETVNSLKRMMERGCNPGMTFFKLA 283
              EM  + G  PD V    +Y + +   C    + + +  LK +   GC P    + + 
Sbjct: 217 LLDEMR-DKGCTPDIV----TYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIV 271

Query: 284 FEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNG 343
            +   T +    AE + G M G+ G  P+   +NM+IS  C       A+++L+++   G
Sbjct: 272 LKGLCTAERWEDAEELMGEM-GQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYG 330

Query: 344 AFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAI 403
             P+  +YN L     K +K                              MD      A+
Sbjct: 331 CSPNSLSYNPLLHAFCKQKK------------------------------MDK-----AM 355

Query: 404 KFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQIL 463
            F   M+   C     + N L+  LC    +  AV+    + +KG      + + +   L
Sbjct: 356 AFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGL 415

Query: 464 IKARKEAVYEELLKK 478
            KA K     ELL +
Sbjct: 416 TKAGKTKEALELLNE 430



 Score = 44.7 bits (104), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 69/178 (38%), Gaps = 48/178 (26%)

Query: 311 PDTHMYNMMISLYCYSNE--------------------------------TGAAMKLLDE 338
           PD   YN M++ YC + +                                T  A+ +LDE
Sbjct: 126 PDVMAYNAMMAGYCGAGQVDAARRWCAERAVERDAYTCDTLIRGLCGRGRTANALAVLDE 185

Query: 339 MVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM--------VKNENVLNHENCRAAV 390
           M+     PD+ TY IL E   K     +A  L +EM        +   NV+ +  C+   
Sbjct: 186 MLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEG- 244

Query: 391 RVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448
           RV    DD   AI+F K +    C   + + N+++ GLC      +A +    M +KG
Sbjct: 245 RV----DD---AIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKG 295


>gi|42408236|dbj|BAD09393.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|125601932|gb|EAZ41257.1| hypothetical protein OsJ_25765 [Oryza sativa Japonica Group]
          Length = 798

 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 96/402 (23%), Positives = 175/402 (43%), Gaps = 29/402 (7%)

Query: 91  SAYQLNDKH-----SP--YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVF 142
           +AY L D+      SP    +N ++  L K    D     +  M K   + +  T  S+ 
Sbjct: 221 TAYHLFDQMLDQGLSPDVVTYNSIISALSKARAMDKAAVVLVRMVKNGAMPNRITHNSLL 280

Query: 143 SSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIK 201
             Y  + +  DAI  F  M + G + DVF  N+L+  +C++G++++A + F  +V    K
Sbjct: 281 HGYCSSGKPNDAIGVFKRMCRDGVEPDVFTYNTLMGYLCKNGRSMEARKIFDSMVKRGHK 340

Query: 202 PDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYET 261
           P++ TY  LL G+  E  +        +M++  G  PD+      Y+  +L G    +  
Sbjct: 341 PNSATYGTLLHGYATEGSLVKMHHLL-DMMVRNGIQPDH------YIFNILIGTYTKHGK 393

Query: 262 VNS----LKRMMERGCNPGMTFFKLAFEE-CLTGQNLRGAEFIWGAMVGRIGFRPDTHMY 316
           V+       +M  +G NP    + +  +  C+ G+ +  A   +G ++   G  PD  ++
Sbjct: 394 VDDAMLLFSKMRRQGLNPDTVTYGIVMDALCMVGK-VDDAMAQFGRLISE-GLTPDAVVF 451

Query: 317 NMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK 376
             +I   C  ++   A +L  EM+  G  P+   +N L   L K   +  A  +F+ MV+
Sbjct: 452 RNLIHGLCARDKWDKAEELAVEMIGRGICPNNIFFNTLLNHLCKEGMVARAKNIFDLMVR 511

Query: 377 ---NENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHM 433
                +V+ +        ++   D+   A K  + M+ +       T N ++ G C    
Sbjct: 512 VDVQRDVITYNTLIDGYCLHGKVDE---AAKLLEGMVLDGVKPNEVTYNTMINGYCKNGR 568

Query: 434 LPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEEL 475
           + +A    + MA KG+       S + Q L +AR+ A  +EL
Sbjct: 569 IEDAFSLFRQMASKGVNPGIVTYSTILQGLFQARRTAAAKEL 610



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 88/350 (25%), Positives = 148/350 (42%), Gaps = 26/350 (7%)

Query: 102 YAWNLVVDLLGKNC-------LFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDA 154
           + +N ++  L KN        +FD+M   +K   K N    AT+ ++   Y     +   
Sbjct: 309 FTYNTLMGYLCKNGRSMEARKIFDSM---VKRGHKPNS---ATYGTLLHGYATEGSLVKM 362

Query: 155 ITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDA-WQFLRVVDGRIKPDNDTYAILLEG 213
               D+M + G + D +  N L+    + GK  DA   F ++    + PD  TY I+++ 
Sbjct: 363 HHLLDMMVRNGIQPDHYIFNILIGTYTKHGKVDDAMLLFSKMRRQGLNPDTVTYGIVMDA 422

Query: 214 WEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGC 273
                 V +A   FG ++ E G  PD V   +  LI  L   D   +       M+ RG 
Sbjct: 423 LCMVGKVDDAMAQFGRLISE-GLTPDAVVFRN--LIHGLCARDKWDKAEELAVEMIGRGI 479

Query: 274 NPGMTFFKLAFEE-CLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAA 332
            P   FF       C  G   R A+ I+  MV R+  + D   YN +I  YC   +   A
Sbjct: 480 CPNNIFFNTLLNHLCKEGMVAR-AKNIFDLMV-RVDVQRDVITYNTLIDGYCLHGKVDEA 537

Query: 333 MKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK---NENVLNHENCRAA 389
            KLL+ MV +G  P+  TYN +     K  ++ +A  LF +M     N  ++ +      
Sbjct: 538 AKLLEGMVLDGVKPNEVTYNTMINGYCKNGRIEDAFSLFRQMASKGVNPGIVTYSTILQG 597

Query: 390 VRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVK 439
           +     +     A + + +MI++       T N+++ GLC  +   +A++
Sbjct: 598 L---FQARRTAAAKELYLWMIKSGIKFDIGTYNIILLGLCQNNCTDDALR 644



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 84/347 (24%), Positives = 142/347 (40%), Gaps = 21/347 (6%)

Query: 47  ANTPSPTVEDVLDKTLIRVSQETV---EQVLKFSYSH-PGPAVKFFRWSAYQLNDKHSP- 101
           A T S       D+ L R +  ++    + L  +  H P  A+  FR        K  P 
Sbjct: 31  AGTDSHHAHHAFDELLHRPTTSSIVDLNRALSDAARHSPAVAISLFRRMVMVARPKVPPN 90

Query: 102 -YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLA-TFASVFSSYVVADRVKDAI-TTF 158
              +++V+D   +    D  + A+  + +    + A TF+ +  +     R  +A+    
Sbjct: 91  LITYSVVIDCCSRVGHLDLAFAALGRVIRSGWTAEAITFSPLLKALCDKKRTSEAMDIAL 150

Query: 159 DVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV------DGRIKPDNDTYAILLE 212
             M   GC  +VF+   LL  +C + ++  A   L  +       G   PD  +Y  ++ 
Sbjct: 151 RRMPVLGCTPNVFSYTILLKGLCDENRSQQALHLLHTMMVADDTRGGYPPDVVSYNTVIN 210

Query: 213 GWEKE-RDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMER 271
           G  +E R +  A   F +M ++ G  PD V  Y+S +I+ L     + +    L RM++ 
Sbjct: 211 GLLREGRQLDTAYHLFDQM-LDQGLSPD-VVTYNS-IISALSKARAMDKAAVVLVRMVKN 267

Query: 272 GCNPG-MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETG 330
           G  P  +T   L    C +G+    A  ++  M  R G  PD   YN ++   C +  + 
Sbjct: 268 GAMPNRITHNSLLHGYCSSGKP-NDAIGVFKRMC-RDGVEPDVFTYNTLMGYLCKNGRSM 325

Query: 331 AAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKN 377
            A K+ D MV  G  P+  TY  L         L +   L + MV+N
Sbjct: 326 EARKIFDSMVKRGHKPNSATYGTLLHGYATEGSLVKMHHLLDMMVRN 372



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 78/303 (25%), Positives = 126/303 (41%), Gaps = 18/303 (5%)

Query: 158 FDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV---DGRIKPDNDTYAILLEGW 214
           FD +        +  LN  LS   R    +    F R+V     ++ P+  TY+++++  
Sbjct: 42  FDELLHRPTTSSIVDLNRALSDAARHSPAVAISLFRRMVMVARPKVPPNLITYSVVIDCC 101

Query: 215 EKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG-CDG--IYETVN-SLKRMME 270
            +   +  A    G  VI  GW  + +         LLK  CD     E ++ +L+RM  
Sbjct: 102 SRVGHLDLAFAALGR-VIRSGWTAEAIT-----FSPLLKALCDKKRTSEAMDIALRRMPV 155

Query: 271 RGCNPGMTFFKLAFEE-CLTGQNLRGAEFIWGAMVG---RIGFRPDTHMYNMMIS-LYCY 325
            GC P +  + +  +  C   ++ +    +   MV    R G+ PD   YN +I+ L   
Sbjct: 156 LGCTPNVFSYTILLKGLCDENRSQQALHLLHTMMVADDTRGGYPPDVVSYNTVINGLLRE 215

Query: 326 SNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHEN 385
             +   A  L D+M+  G  PD+ TYN +   L K R + +A+ +   MVKN  + N   
Sbjct: 216 GRQLDTAYHLFDQMLDQGLSPDVVTYNSIISALSKARAMDKAAVVLVRMVKNGAMPNRIT 275

Query: 386 CRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMA 445
             + +  Y  S  P  AI  +K M  +       T N L+  LC      EA K    M 
Sbjct: 276 HNSLLHGYCSSGKPNDAIGVFKRMCRDGVEPDVFTYNTLMGYLCKNGRSMEARKIFDSMV 335

Query: 446 EKG 448
           ++G
Sbjct: 336 KRG 338



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 107/219 (48%), Gaps = 8/219 (3%)

Query: 166 CKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDVANAK 224
           C +++F  N+LL+ +C++G    A   F  +V   ++ D  TY  L++G+     V  A 
Sbjct: 480 CPNNIF-FNTLLNHLCKEGMVARAKNIFDLMVRVDVQRDVITYNTLIDGYCLHGKVDEAA 538

Query: 225 KTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSL-KRMMERGCNPGMTFFKLA 283
           K    MV++ G  P+ V  Y++ +    K  +G  E   SL ++M  +G NPG+  +   
Sbjct: 539 KLLEGMVLD-GVKPNEV-TYNTMINGYCK--NGRIEDAFSLFRQMASKGVNPGIVTYSTI 594

Query: 284 FEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNG 343
            +     +    A+ ++  M+ + G + D   YN+++   C +N T  A+++   +    
Sbjct: 595 LQGLFQARRTAAAKELYLWMI-KSGIKFDIGTYNIILLGLCQNNCTDDALRIFQNLYLID 653

Query: 344 AFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLN 382
              + +T+NI+ + L+KG +  EA  LF  ++    V N
Sbjct: 654 FHLENRTFNIMIDALLKGGRHDEAKDLFASLLARGLVPN 692


>gi|77557056|gb|ABA99852.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 726

 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 103/436 (23%), Positives = 188/436 (43%), Gaps = 10/436 (2%)

Query: 51  SPTVEDVLDKTLIRVSQETVEQVLKF-SYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVD 109
           SP +E  L   L  +S   V  VL+  +      A +FFRW+  Q   +H+P  ++ ++ 
Sbjct: 76  SPKLEAQLRHLLRVLSPPQVRAVLRAQARGDVRRAFEFFRWADRQWRYRHAPEVFDEMLS 135

Query: 110 LLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKH 168
           LL    L D     ++ M +  V      FA +  SY  A +++ A+    +M++ GC  
Sbjct: 136 LLSNTRLHDPARRVVRLMIRRGVRRGTEQFAQLMLSYSRAGKLRSAMRVLHLMQKDGCAP 195

Query: 169 DVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTF 227
           D+   N  ++ +   G+   A +F  R+    ++PD  TY  L++G    R V +A +  
Sbjct: 196 DISICNMAVNVLVVAGRVDKALEFAERMRRVGVEPDVYTYNCLIKGLCGARRVVDAMEMI 255

Query: 228 GEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMM-ERGCNP-GMTFFKLAFE 285
           G M ++ G  PD +  Y   +++ L     + E    L+RM  + G  P  +T+  L   
Sbjct: 256 GVM-LQNGCPPDKISYYT--VMSFLCKEKRVEEVRGLLQRMRNDAGLFPDQVTYNVLIHG 312

Query: 286 ECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAF 345
               G      EF+  +   R  FR D   Y+ ++  +C +     A +++ EM+  G  
Sbjct: 313 LAKHGHADEALEFLRESEGKR--FRVDEVGYSAIVHSFCLNGRMAEAKEIVGEMISKGCQ 370

Query: 346 PDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKF 405
           PD+ TY+ + +   +  +L +A  +   M KN+   N     A +           A + 
Sbjct: 371 PDVVTYSTVVDGFCRIGELDQARKMMKHMYKNDCKPNTVTHTALLNGLCKVGKTSEAWEL 430

Query: 406 WKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIK 465
                E   +    T ++++ G      L E+      M +KG   T   ++ L   L K
Sbjct: 431 LNKSEEEWWTPSDITYSVVMHGFRREGKLKESCDVVVQMLQKGFFPTTVEINLLIHALCK 490

Query: 466 ARKEAVYEELLKKCKA 481
            RK A  ++ +++C++
Sbjct: 491 DRKPAEAKDFMEQCQS 506



 Score = 43.9 bits (102), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 59/286 (20%), Positives = 125/286 (43%), Gaps = 19/286 (6%)

Query: 104 WNLVVDLLGKNCLFDAMWDAIK-SMKKENVLSLATFASVFSSYVVADRVKDAITTFDVME 162
           +N+++  L K+   D   + ++ S  K   +    ++++  S+ +  R+ +A      M 
Sbjct: 306 YNVLIHGLAKHGHADEALEFLRESEGKRFRVDEVGYSAIVHSFCLNGRMAEAKEIVGEMI 365

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYAILLEGWEKERDVA 221
             GC+ DV   ++++   CR G+   A + ++ +     KP+  T+  LL G  K    +
Sbjct: 366 SKGCQPDVVTYSTVVDGFCRIGELDQARKMMKHMYKNDCKPNTVTHTALLNGLCKVGKTS 425

Query: 222 NAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFK 281
            A +   +   E  W P ++    S ++   +    + E+ + + +M+++G  P      
Sbjct: 426 EAWELLNKSE-EEWWTPSDITY--SVVMHGFRREGKLKESCDVVVQMLQKGFFPTTVEIN 482

Query: 282 LAFEE-CLTGQNLRGAEFIW-----GAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKL 335
           L     C   +     +F+      G  +  + F    H ++          +  +A+ L
Sbjct: 483 LLIHALCKDRKPAEAKDFMEQCQSKGCTINVVNFTTVIHGFS-------RQGDLESALSL 535

Query: 336 LDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVL 381
           +D+M  +   PD+ TY ++ + L K  +L EA+GL  +M+ N  VL
Sbjct: 536 MDDMYLSNRHPDVVTYTVVVDALGKKGRLKEATGLVEKML-NRGVL 580


>gi|297832318|ref|XP_002884041.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297329881|gb|EFH60300.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 874

 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 91/354 (25%), Positives = 161/354 (45%), Gaps = 14/354 (3%)

Query: 98  KHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAIT 156
           K + + + ++V    K  L D   + + SM+   VL +   + ++ SS+    R  D+  
Sbjct: 179 KPNEFTFGILVRGYCKAGLTDKGLELLNSMESFGVLPNKVVYNTIVSSFCREGRNDDSEK 238

Query: 157 TFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVD-----GRIKPDNDTYAILL 211
             + M + G   D+   NS +SA+C++GK +DA +    ++     G  +P++ TY ++L
Sbjct: 239 LVEKMREEGLVPDIVTFNSRISALCKEGKVLDASRIFSDMELDEYLGLPRPNSITYNLML 298

Query: 212 EGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMER 271
           +G+ K   + +AK  F    I    D  ++ +Y+ +L  L++    I E    LK+M+++
Sbjct: 299 KGFCKVGLLEDAKTLFES--IRENDDLVSLQSYNIWLQGLVRHGKFI-EAETVLKQMIDK 355

Query: 272 GCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGA 331
           G  P +  + +  +       L  A+ I G M  R G  PD   Y  ++  YC   +  A
Sbjct: 356 GIGPSIYSYNILMDGLCKLGMLSDAKTIVGLM-KRNGVSPDAVTYGCLLHGYCSVGKVDA 414

Query: 332 AMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVR 391
           A  LL EM+ N   P+  T NIL   L    ++ EA  L  +M +    L+   C   V 
Sbjct: 415 AKSLLQEMMRNNCLPNAYTCNILLHSLWNMGRISEAEELLRKMNEKGYGLDTVTCNIIVD 474

Query: 392 VYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVA----GLCDMHMLPEAVKYA 441
               S +   AI+  K M  +  + L   GN  +      L + + LP+ + Y+
Sbjct: 475 GLCGSGELDKAIEIVKGMRVHGSAALGNLGNSYIGLVDDSLIENNCLPDLITYS 528



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 62/213 (29%), Positives = 95/213 (44%), Gaps = 12/213 (5%)

Query: 173 LNSLLSAICRDGKT--ID----AWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKT 226
           L+SLLS +    K+  ID     +QF+R      KP    Y +LLE   +ER V      
Sbjct: 75  LSSLLSVVSIFAKSNHIDKAFPQFQFVRSRFPENKPGIYLYNVLLESCIRERRVEFVSWL 134

Query: 227 FGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPG-MTFFKLAFE 285
           + +MV+  G  P+      + LI  L     +         M E+GC P   TF  L   
Sbjct: 135 YKDMVL-CGISPETYTF--NLLIRALCDSSCVDAARELFDEMPEKGCKPNEFTFGILVRG 191

Query: 286 ECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAF 345
            C  G   +G E +    +   G  P+  +YN ++S +C       + KL+++M   G  
Sbjct: 192 YCKAGLTDKGLELL--NSMESFGVLPNKVVYNTIVSSFCREGRNDDSEKLVEKMREEGLV 249

Query: 346 PDIQTYNILFEFLVKGRKLWEASGLFNEMVKNE 378
           PDI T+N     L K  K+ +AS +F++M  +E
Sbjct: 250 PDIVTFNSRISALCKEGKVLDASRIFSDMELDE 282



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 59/277 (21%), Positives = 117/277 (42%), Gaps = 18/277 (6%)

Query: 100 SPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLA-TFASVFSSYVVADRVKDAITTF 158
           S Y++N+++D L K  +       +  MK+  V   A T+  +   Y    +V  A +  
Sbjct: 360 SIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGVSPDAVTYGCLLHGYCSVGKVDAAKSLL 419

Query: 159 DVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKE 217
             M +  C  + +  N LL ++   G+  +A + LR ++ +    D  T  I+++G    
Sbjct: 420 QEMMRNNCLPNAYTCNILLHSLWNMGRISEAEELLRKMNEKGYGLDTVTCNIIVDGLCGS 479

Query: 218 RDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGM 277
            ++  A +    M +       N+   +SY+        G+ +       ++E  C P +
Sbjct: 480 GELDKAIEIVKGMRVHGSAALGNLG--NSYI--------GLVD-----DSLIENNCLPDL 524

Query: 278 TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLD 337
             +               A+ ++  M+G    +PD+  YN+ I  +C   +  +A ++L 
Sbjct: 525 ITYSTLLNGLCKAGRFAEAKTLFAEMMGE-KLQPDSLAYNIFIHHFCKQGKISSAFRVLK 583

Query: 338 EMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
           +M   G    ++TYN L   L    +++E  GL +EM
Sbjct: 584 DMEKKGCHKSLETYNSLILGLGIKNQIFEIHGLMDEM 620



 Score = 47.0 bits (110), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 54/242 (22%), Positives = 103/242 (42%), Gaps = 6/242 (2%)

Query: 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR 194
           L T++++ +    A R  +A T F  M     + D  A N  +   C+ GK   A++ L+
Sbjct: 524 LITYSTLLNGLCKAGRFAEAKTLFAEMMGEKLQPDSLAYNIFIHHFCKQGKISSAFRVLK 583

Query: 195 VVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLK 253
            ++ +      +TY  L+ G   +  +        EM  E G  P N+  Y++ +  L +
Sbjct: 584 DMEKKGCHKSLETYNSLILGLGIKNQIFEIHGLMDEMR-EKGISP-NICTYNTAIQYLCE 641

Query: 254 GCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDT 313
           G   + +  N L  MM++   P +  FK          +   A+ ++   V   G +   
Sbjct: 642 G-GKVEDATNLLDEMMQKNIAPNVFSFKYLIGAFCKVPDFDMAQEVFETAVSICGQKEG- 699

Query: 314 HMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNE 373
            +Y++M +    + +   A +LL+ ++  G       Y  L   L K  +L  ASG+ ++
Sbjct: 700 -LYSLMFNELLAAGQLLKATELLEAVLDRGFELGTFLYKDLVVSLCKKDELEVASGILHK 758

Query: 374 MV 375
           M+
Sbjct: 759 MI 760


>gi|354726093|emb|CCD31439.1| RNA processing factor 3 [Arabidopsis thaliana]
          Length = 629

 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 76/304 (25%), Positives = 141/304 (46%), Gaps = 5/304 (1%)

Query: 136 ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRV 195
            TF ++     + ++  +A+   D M Q GC+ D+    ++++ +C+ G    A   L+ 
Sbjct: 186 VTFNTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGAVVNGLCKRGDIDLALSLLKK 245

Query: 196 VD-GRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG 254
           ++ G+I+ D   Y  +++G  K + + +A   F +M  + G  PD V  Y+S LI+ L  
Sbjct: 246 MEKGKIEADVVIYNTIIDGLCKYKHIDDAFALFNKMETK-GIRPD-VFTYNS-LISCLCN 302

Query: 255 CDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTH 314
                +    L  M+ER  NP +  F    +  +    L  AE ++  M+ R    PD  
Sbjct: 303 YGRWSDASRLLSNMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKR-SIDPDIF 361

Query: 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
            Y+ +I+ +C  +    A  + + M+    FP++ TYN L +   K +++ E   LF EM
Sbjct: 362 TYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREM 421

Query: 375 VKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHML 434
            +   V N       ++    + D  +A K +K M+ +       T ++L+ GLC    L
Sbjct: 422 SQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKL 481

Query: 435 PEAV 438
            +A+
Sbjct: 482 EKAL 485



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 78/297 (26%), Positives = 139/297 (46%), Gaps = 14/297 (4%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVLS-LATFASVFSSYVVADRVKDAITTFDVM 161
            +  VV+ L K    D     +K M+K  + + +  + ++         + DA   F+ M
Sbjct: 222 TYGAVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHIDDAFALFNKM 281

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERDV 220
           E  G + DVF  NSL+S +C  G+  DA + L  +++ +I P+  T++ L++ + KE  +
Sbjct: 282 ETKGIRPDVFTYNSLISCLCNYGRWSDASRLLSNMIERKINPNVVTFSALIDAFVKEGKL 341

Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFF 280
             A+K + EM I+   DPD +  Y S LI      D + E  +  + M+ + C P +  +
Sbjct: 342 VEAEKLYDEM-IKRSIDPD-IFTYSS-LINGFCMHDRLDEAKHMFELMISKDCFPNVVTY 398

Query: 281 KLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMV 340
               +     + +     ++  M  R G   +T  YN +I     + +   A K+  +MV
Sbjct: 399 NTLIKGFCKAKRVEEGMELFREMSQR-GLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMV 457

Query: 341 YNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNE--------NVLNHENCRAA 389
            +G  PDI TY+IL + L K  KL +A  +F  + K++        N++    C+A 
Sbjct: 458 SDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAG 514



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 96/433 (22%), Positives = 173/433 (39%), Gaps = 57/433 (13%)

Query: 87  FFRWSAYQLNDKHSPYAW-NLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSY 145
           +F  ++Y   +K S  A  NL +D        DA+    + ++   + S+  F  + S+ 
Sbjct: 39  YFSAASYDYREKLSRNALLNLKLD--------DAIGLFGEMVQSRPLPSIVEFNKLLSAI 90

Query: 146 VVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDN 204
               +    I+  + M+     +D+++ N L++  CR  +   A   L +++    +PD 
Sbjct: 91  AKMKKFDLVISLGERMQNLRISYDLYSYNILINCFCRRSQLPLALAVLGKMMKLGYEPDI 150

Query: 205 DTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC---DGIYET 261
            T + LL G+   + +++A     +MV E+G+ PD V        TL+ G    +   E 
Sbjct: 151 VTLSSLLNGYCHSKRISDAVALVDQMV-EMGYKPDTVT-----FNTLIHGLFLHNKASEA 204

Query: 262 VNSLKRMMERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMI 320
           V  + +M++RGC P + T+  +    C  G        +     G+I    D  +YN +I
Sbjct: 205 VALVDQMVQRGCQPDLVTYGAVVNGLCKRGDIDLALSLLKKMEKGKI--EADVVIYNTII 262

Query: 321 SLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFL---------------------- 358
              C       A  L ++M   G  PD+ TYN L   L                      
Sbjct: 263 DGLCKYKHIDDAFALFNKMETKGIRPDVFTYNSLISCLCNYGRWSDASRLLSNMIERKIN 322

Query: 359 -------------VKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKF 405
                        VK  KL EA  L++EM+K     +     + +  +   D    A   
Sbjct: 323 PNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHM 382

Query: 406 WKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIK 465
           ++ MI   C     T N L+ G C    + E ++  + M+++G+       + L Q L +
Sbjct: 383 FELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQ 442

Query: 466 ARKEAVYEELLKK 478
           A    + +++ KK
Sbjct: 443 AGDCDMAQKIFKK 455



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/242 (23%), Positives = 105/242 (43%), Gaps = 11/242 (4%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           T++S+ + + + DR+ +A   F++M    C  +V   N+L+   C+  +  +  +  R +
Sbjct: 362 TYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREM 421

Query: 197 DGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
             R +  +  TY  L++G  +  D   A+K F +MV + G  PD +    +Y I L   C
Sbjct: 422 SQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSD-GVPPDII----TYSILLDGLC 476

Query: 256 D--GIYETVNSLKRMMERGCNPGMTFFKLAFEE-CLTGQNLRGAEFIWGAMVGRIGFRPD 312
               + + +   + + +    P +  + +  E  C  G+   G +      +   G +P+
Sbjct: 477 KYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLK--GVKPN 534

Query: 313 THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFN 372
             +Y  MIS +C       A  L  EM  +G  PD   YN L    ++      ++ L  
Sbjct: 535 VIIYTTMISGFCRKGLKEEADALFREMKEDGTLPDSGCYNTLIRARLRDGDKAASAELIK 594

Query: 373 EM 374
           EM
Sbjct: 595 EM 596



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 64/283 (22%), Positives = 118/283 (41%), Gaps = 17/283 (6%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-F 192
           ++ TF+++  ++V   ++ +A   +D M +     D+F  +SL++  C   +  +A   F
Sbjct: 324 NVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMF 383

Query: 193 LRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIE--VGWDPDNVPAYDSYLIT 250
             ++     P+  TY  L++G+ K + V    + F EM     VG    N   Y++ +  
Sbjct: 384 ELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVG----NTVTYNTLIQG 439

Query: 251 LLKG--CDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIG 308
           L +   CD   +     K+M+  G  P +  + +  +       L  A  ++   + +  
Sbjct: 440 LFQAGDCDMAQKI---FKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVF-EYLQKSK 495

Query: 309 FRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFE-FLVKGRKLWEA 367
             PD + YN+MI   C + +      L   +   G  P++  Y  +   F  KG K  EA
Sbjct: 496 MEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLK-EEA 554

Query: 368 SGLFNEMVKNENVLNHENC-RAAVRVYMDSDDPYVAIKFWKYM 409
             LF EM K +  L    C    +R  +   D   + +  K M
Sbjct: 555 DALFREM-KEDGTLPDSGCYNTLIRARLRDGDKAASAELIKEM 596


>gi|224130828|ref|XP_002328386.1| predicted protein [Populus trichocarpa]
 gi|222838101|gb|EEE76466.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 94/379 (24%), Positives = 156/379 (41%), Gaps = 17/379 (4%)

Query: 95  LNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDA 154
           L  KH  +  N   D+     + DA+    + ++     S+  F     S     +   A
Sbjct: 60  LPQKHCGFGSNTSNDI----SIDDALTSFYRMVRMNPRPSVVEFGKFLGSIAKKKQYSSA 115

Query: 155 ITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-----IKPDNDTYAI 209
           ++  + M+ +G  H+V++LN L++ +CR    +    F   V G+     I+PD  T+  
Sbjct: 116 VSLCNQMDLFGVTHNVYSLNVLINCLCR----LSHVDFAVSVMGKMFKLGIQPDAITFNT 171

Query: 210 LLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMM 269
           L+ G   E  +  A   F EMV   G +P NV +Y++ +  L K  + I   V   ++M 
Sbjct: 172 LINGLCNEGKIKEAVGLFNEMVWS-GHEP-NVISYNTVINGLCKNGNTIM-AVRVFRKME 228

Query: 270 ERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNET 329
           +    P +  +    +     + +  A      MV R G  PD   YN ++  +C   + 
Sbjct: 229 QNRGKPNVVTYNTIIDSLCKDRLVNEAVEFLSEMVDR-GIPPDVVTYNTILHGFCSLGQL 287

Query: 330 GAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAA 389
             A +L  EMV     PD  T+NIL + L K   + EA  +   M +     N     A 
Sbjct: 288 NEATRLFKEMVGRNVMPDTVTFNILVDGLCKEGMVSEARCVSETMTEKGAEPNAYTYNAL 347

Query: 390 VRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
           +  Y   +    AIK    MI   C+    + N+L+ G C    + EA +    M+EK +
Sbjct: 348 MDGYCLHNQMDEAIKVLGIMIGKGCAPNLSSYNILINGYCKSKRMNEAKRLLSEMSEKNL 407

Query: 450 QVTPFALSKLKQILIKARK 468
                  S L Q L +  +
Sbjct: 408 TPDTVTYSTLMQGLCQVGR 426



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 107/420 (25%), Positives = 176/420 (41%), Gaps = 76/420 (18%)

Query: 99  HSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLA-TFASVFSSYVVADRVKDAITT 157
           H+ Y+ N++++ L +    D     +  M K  +   A TF ++ +      ++K+A+  
Sbjct: 129 HNVYSLNVLINCLCRLSHVDFAVSVMGKMFKLGIQPDAITFNTLINGLCNEGKIKEAVGL 188

Query: 158 FDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVD-GRIKPDNDTYAILLEGWEK 216
           F+ M   G + +V + N++++ +C++G TI A +  R ++  R KP+  TY  +++   K
Sbjct: 189 FNEMVWSGHEPNVISYNTVINGLCKNGNTIMAVRVFRKMEQNRGKPNVVTYNTIIDSLCK 248

Query: 217 ERDVANAKKTFGEMVIEVGWDPDNVPAYDSYL---------------------------- 248
           +R V  A +   EMV + G  PD V  Y++ L                            
Sbjct: 249 DRLVNEAVEFLSEMV-DRGIPPD-VVTYNTILHGFCSLGQLNEATRLFKEMVGRNVMPDT 306

Query: 249 ITLLKGCDGI-YETVNSLKR-----MMERGCNP-GMTFFKLAFEECLTGQNLRGAEFIWG 301
           +T     DG+  E + S  R     M E+G  P   T+  L    CL  Q +  A  + G
Sbjct: 307 VTFNILVDGLCKEGMVSEARCVSETMTEKGAEPNAYTYNALMDGYCLHNQ-MDEAIKVLG 365

Query: 302 AMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKG 361
            M+G+ G  P+   YN++I+ YC S     A +LL EM      PD  TY+ L + L + 
Sbjct: 366 IMIGK-GCAPNLSSYNILINGYCKSKRMNEAKRLLSEMSEKNLTPDTVTYSTLMQGLCQV 424

Query: 362 RKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETG 421
            +  EA  LF EM           C + +                         DL    
Sbjct: 425 GRPREALNLFKEM-----------CSSGL-----------------------LPDLMAY- 449

Query: 422 NLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKCKA 481
           ++L+ G C    L EA+K  K M E+ I+      + L + +  A K  V +EL  K  A
Sbjct: 450 SILLDGFCKHGHLDEALKLLKEMHERRIKPNIILYTILIRGMFIAGKLEVAKELFSKLSA 509



 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 79/302 (26%), Positives = 133/302 (44%), Gaps = 25/302 (8%)

Query: 84  AVKFFR---WSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMK----KENVLSLA 136
           AV  F    WS ++ N      ++N V++ L KN          + M+    K NV+   
Sbjct: 185 AVGLFNEMVWSGHEPN----VISYNTVINGLCKNGNTIMAVRVFRKMEQNRGKPNVV--- 237

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           T+ ++  S      V +A+     M   G   DV   N++L   C  G+  +A +  + +
Sbjct: 238 TYNTIIDSLCKDRLVNEAVEFLSEMVDRGIPPDVVTYNTILHGFCSLGQLNEATRLFKEM 297

Query: 197 DGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG- 254
            GR + PD  T+ IL++G  KE  V+ A+    E + E G +P N   Y++    L+ G 
Sbjct: 298 VGRNVMPDTVTFNILVDGLCKEGMVSEAR-CVSETMTEKGAEP-NAYTYNA----LMDGY 351

Query: 255 C--DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD 312
           C  + + E +  L  M+ +GC P ++ + +        + +  A+ +   M  +    PD
Sbjct: 352 CLHNQMDEAIKVLGIMIGKGCAPNLSSYNILINGYCKSKRMNEAKRLLSEMSEK-NLTPD 410

Query: 313 THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFN 372
           T  Y+ ++   C       A+ L  EM  +G  PD+  Y+IL +   K   L EA  L  
Sbjct: 411 TVTYSTLMQGLCQVGRPREALNLFKEMCSSGLLPDLMAYSILLDGFCKHGHLDEALKLLK 470

Query: 373 EM 374
           EM
Sbjct: 471 EM 472



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 70/306 (22%), Positives = 132/306 (43%), Gaps = 12/306 (3%)

Query: 125 KSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRD 183
           K M   NV+    TF  +         V +A    + M + G + + +  N+L+   C  
Sbjct: 295 KEMVGRNVMPDTVTFNILVDGLCKEGMVSEARCVSETMTEKGAEPNAYTYNALMDGYCLH 354

Query: 184 GKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVP 242
            +  +A + L ++ G+   P+  +Y IL+ G+ K + +  AK+   EM  E    PD V 
Sbjct: 355 NQMDEAIKVLGIMIGKGCAPNLSSYNILINGYCKSKRMNEAKRLLSEMS-EKNLTPDTV- 412

Query: 243 AYDSYLITLLKGCDGI---YETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFI 299
            Y     TL++G   +    E +N  K M   G  P +  + +  +      +L  A  +
Sbjct: 413 TYS----TLMQGLCQVGRPREALNLFKEMCSSGLLPDLMAYSILLDGFCKHGHLDEALKL 468

Query: 300 WGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLV 359
              M  R   +P+  +Y ++I     + +   A +L  ++  +G  PDI TYN++ + L+
Sbjct: 469 LKEMHER-RIKPNIILYTILIRGMFIAGKLEVAKELFSKLSADGIRPDIWTYNVMIKGLL 527

Query: 360 KGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSE 419
           K     EA   F +M  +  + +  +    ++ ++ + D   AI+    M+    S  S 
Sbjct: 528 KEGLSDEAYEFFRKMEDDGFLPDSCSYNVIIQGFLQNQDSSTAIQLIDEMVGKRFSADSS 587

Query: 420 TGNLLV 425
           T  +L+
Sbjct: 588 TFQMLL 593


>gi|125528152|gb|EAY76266.1| hypothetical protein OsI_04202 [Oryza sativa Indica Group]
          Length = 528

 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 100/430 (23%), Positives = 173/430 (40%), Gaps = 16/430 (3%)

Query: 28  SHLDVPNLPPTIKTLCEIIANTP------SPTVEDVLDKTLIRVSQETVEQVLKFSYSHP 81
           S  D+  LPP +    E +          +     +L++     S+  V  VL    +  
Sbjct: 66  SFADLQKLPPDVARDVEAVVGAAEGFHADAARARGLLERCGATASEPVVVAVLARLRNSC 125

Query: 82  GPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASV 141
             A   FRW++ Q       +A++ ++ +L K+  FD     +  M++ ++ S A    +
Sbjct: 126 AAAHAAFRWASAQPGYAPGRHAYHSMLAILAKHRRFDDARALLDQMRRSSLASPAAVMLL 185

Query: 142 FSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIK 201
              Y  A  V  A+  F  +   G +  V   + LL+A+CR     DA   L   +    
Sbjct: 186 IRRYCAARDVAGAVAAFRALPSLGFRPGVAEFHGLLTALCRYKNVQDAEHLLLSSEKEFP 245

Query: 202 PDNDTYAILLEGW-EKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYE 260
            +  ++ ++L GW    R V  AK+ +  M  E+     +V +Y S +    K   G  +
Sbjct: 246 FETKSFNVVLNGWCNMVRSVREAKRFWNAM--EIKGIKRDVVSYGSMISCFSKA--GSLD 301

Query: 261 TVNSL-KRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMM 319
           TV  L  RM E G  P    +         G+ +  A+ +  +M  + G  PDT  +N +
Sbjct: 302 TVMKLFNRMKEAGVVPDRKIYNAVVYALAKGRCVNEAKALVRSMEEK-GVAPDTATFNSL 360

Query: 320 ISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNEN 379
           I   C + +   A K+LD+M+  G  P ++T++ L +     R   E   L ++M + + 
Sbjct: 361 IRPLCKARQVQEARKMLDDMLGRGLSPSVRTFHALLDV---ARSPIEVFDLLDKMKELQC 417

Query: 380 VLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVK 439
               +     +R +          K W  M  N  S       +L+ GL     L E+ K
Sbjct: 418 DPEMDTFIMLIRKFCRWRQHDSVEKLWSAMPANGLSPDRSAYIVLIHGLFLNGRLEESAK 477

Query: 440 YAKGMAEKGI 449
           Y + M  KG 
Sbjct: 478 YYEEMKAKGF 487


>gi|297720523|ref|NP_001172623.1| Os01g0816000 [Oryza sativa Japonica Group]
 gi|56785065|dbj|BAD82704.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|125572420|gb|EAZ13935.1| hypothetical protein OsJ_03862 [Oryza sativa Japonica Group]
 gi|255673815|dbj|BAH91353.1| Os01g0816000 [Oryza sativa Japonica Group]
          Length = 530

 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 101/430 (23%), Positives = 172/430 (40%), Gaps = 16/430 (3%)

Query: 28  SHLDVPNLPPTIKTLCEIIANTP------SPTVEDVLDKTLIRVSQETVEQVLKFSYSHP 81
           S  D+  LPP +    E +          +     +L++     S+  V  VL    +  
Sbjct: 68  SFADLQKLPPDVARDVEAVVGAAEGFHADAARARGLLERCGATASEPVVVAVLDRLRNSC 127

Query: 82  GPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASV 141
             A   FRW++ Q       +A + ++ +L K+  FD     +  M++ ++ S A    +
Sbjct: 128 AAAHAAFRWASAQPGYAPGRHACHSMLAILAKHRRFDDARALLDQMRRSSLASPAAVMLL 187

Query: 142 FSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIK 201
              Y  A  V  A+  F  +   G +  V   + LL+A+CR     DA   L   +    
Sbjct: 188 IRRYCAARDVAGAVAAFRALPNLGFRPGVAEFHGLLTALCRYKNVQDAEHLLLSSEKEFP 247

Query: 202 PDNDTYAILLEGW-EKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYE 260
            +  ++ ++L GW    R V  AK+ +  M  E+     +V +Y S +    K   G  +
Sbjct: 248 FETKSFNVVLNGWCNMVRSVREAKRFWNAM--EIKGIKRDVVSYGSMISCFSKA--GSLD 303

Query: 261 TVNSL-KRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMM 319
           TV  L  RM E G  P    +         GQ +  A+ +  +M  + G  PDT  +N +
Sbjct: 304 TVMKLFNRMKEAGVIPDRKIYNAVVYALAKGQCVNEAKALVRSMEEK-GVAPDTATFNSL 362

Query: 320 ISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNEN 379
           I   C + +   A K+LD+M+  G  P ++T++ L +     R   E   L ++M + + 
Sbjct: 363 IRPLCKARQVQEARKMLDDMLGRGLSPSVRTFHALLDV---ARSPIEVFDLLDKMKELQC 419

Query: 380 VLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVK 439
               +     +R +          K W  M  N  S       +L+ GL     L E+ K
Sbjct: 420 DPEMDTFIMLIRKFCRWRQHDSVEKLWSAMPANGLSPDRSAYIVLIHGLFLNGRLEESAK 479

Query: 440 YAKGMAEKGI 449
           Y + M  KG 
Sbjct: 480 YYEEMKAKGF 489


>gi|145360025|ref|NP_179305.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122223754|sp|Q0WPZ6.1|PP158_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g17140
 gi|110737729|dbj|BAF00803.1| hypothetical protein [Arabidopsis thaliana]
 gi|330251496|gb|AEC06590.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 874

 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 91/354 (25%), Positives = 161/354 (45%), Gaps = 14/354 (3%)

Query: 98  KHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAIT 156
           K + + + ++V    K  L D   + + +M+   VL +   + ++ SS+    R  D+  
Sbjct: 179 KPNEFTFGILVRGYCKAGLTDKGLELLNAMESFGVLPNKVIYNTIVSSFCREGRNDDSEK 238

Query: 157 TFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVD-----GRIKPDNDTYAILL 211
             + M + G   D+   NS +SA+C++GK +DA +    ++     G  +P++ TY ++L
Sbjct: 239 MVEKMREEGLVPDIVTFNSRISALCKEGKVLDASRIFSDMELDEYLGLPRPNSITYNLML 298

Query: 212 EGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMER 271
           +G+ K   + +AK  F    I    D  ++ +Y+ +L  L++    I E    LK+M ++
Sbjct: 299 KGFCKVGLLEDAKTLFES--IRENDDLASLQSYNIWLQGLVRHGKFI-EAETVLKQMTDK 355

Query: 272 GCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGA 331
           G  P +  + +  +       L  A+ I G M  R G  PD   Y  ++  YC   +  A
Sbjct: 356 GIGPSIYSYNILMDGLCKLGMLSDAKTIVGLM-KRNGVCPDAVTYGCLLHGYCSVGKVDA 414

Query: 332 AMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVR 391
           A  LL EM+ N   P+  T NIL   L K  ++ EA  L  +M +    L+   C   V 
Sbjct: 415 AKSLLQEMMRNNCLPNAYTCNILLHSLWKMGRISEAEELLRKMNEKGYGLDTVTCNIIVD 474

Query: 392 VYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVA----GLCDMHMLPEAVKYA 441
               S +   AI+  K M  +  + L   GN  +      L + + LP+ + Y+
Sbjct: 475 GLCGSGELDKAIEIVKGMRVHGSAALGNLGNSYIGLVDDSLIENNCLPDLITYS 528



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 64/213 (30%), Positives = 96/213 (45%), Gaps = 12/213 (5%)

Query: 173 LNSLLSAICRDGKT--ID-AWQFLRVVDGRI---KPDNDTYAILLEGWEKERDVANAKKT 226
           L+SLLS +    K+  ID A+   ++V  R    KP    Y +LLE   KER V      
Sbjct: 75  LSSLLSVVSIFAKSNHIDKAFPQFQLVRSRFPENKPSVYLYNLLLESCIKERRVEFVSWL 134

Query: 227 FGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPG-MTFFKLAFE 285
           + +MV+  G  P       + LI  L     +         M E+GC P   TF  L   
Sbjct: 135 YKDMVL-CGIAPQTYTF--NLLIRALCDSSCVDAARELFDEMPEKGCKPNEFTFGILVRG 191

Query: 286 ECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAF 345
            C  G   +G E +  AM    G  P+  +YN ++S +C       + K++++M   G  
Sbjct: 192 YCKAGLTDKGLELL-NAMES-FGVLPNKVIYNTIVSSFCREGRNDDSEKMVEKMREEGLV 249

Query: 346 PDIQTYNILFEFLVKGRKLWEASGLFNEMVKNE 378
           PDI T+N     L K  K+ +AS +F++M  +E
Sbjct: 250 PDIVTFNSRISALCKEGKVLDASRIFSDMELDE 282



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 82/425 (19%), Positives = 168/425 (39%), Gaps = 57/425 (13%)

Query: 94  QLNDKH---SPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLA-TFASVFSSYVVAD 149
           Q+ DK    S Y++N+++D L K  +       +  MK+  V   A T+  +   Y    
Sbjct: 351 QMTDKGIGPSIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGVCPDAVTYGCLLHGYCSVG 410

Query: 150 RVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYA 208
           +V  A +    M +  C  + +  N LL ++ + G+  +A + LR ++ +    D  T  
Sbjct: 411 KVDAAKSLLQEMMRNNCLPNAYTCNILLHSLWKMGRISEAEELLRKMNEKGYGLDTVTCN 470

Query: 209 ILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRM 268
           I+++G     ++  A +    M +       N+   +SY+        G+ +       +
Sbjct: 471 IIVDGLCGSGELDKAIEIVKGMRVHGSAALGNLG--NSYI--------GLVD-----DSL 515

Query: 269 MERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNE 328
           +E  C P +  +               A+ ++  M+G    +PD+  YN+ I  +C   +
Sbjct: 516 IENNCLPDLITYSTLLNGLCKAGRFAEAKNLFAEMMGE-KLQPDSVAYNIFIHHFCKQGK 574

Query: 329 TGAAMK-----------------------------------LLDEMVYNGAFPDIQTYNI 353
             +A +                                   L+DEM   G  P+I TYN 
Sbjct: 575 ISSAFRVLKDMEKKGCHKSLETYNSLILGLGIKNQIFEIHGLMDEMKEKGISPNICTYNT 634

Query: 354 LFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENH 413
             ++L +G K+ +A+ L +EM++     N  + +  +  +    D  +A + ++  + + 
Sbjct: 635 AIQYLCEGEKVEDATNLLDEMMQKNIAPNVFSFKYLIEAFCKVPDFDMAQEVFETAV-SI 693

Query: 414 CSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYE 473
           C       +L+   L     L +A +  + + ++G ++  F    L + L K  +  V  
Sbjct: 694 CGQKEGLYSLMFNELLAAGQLLKATELLEAVLDRGFELGTFLYKDLVESLCKKDELEVAS 753

Query: 474 ELLKK 478
            +L K
Sbjct: 754 GILHK 758


>gi|357436823|ref|XP_003588687.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477735|gb|AES58938.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 587

 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 112/490 (22%), Positives = 206/490 (42%), Gaps = 43/490 (8%)

Query: 12  DPSPDPHNKRKRSTFASHLDVPNLPPTIKTLCEIIANTPSPTVEDVLDKTLIRVSQETVE 71
           +P+P+   +  + TF+     PN    I TL    + +P  ++   L +T I+ +   + 
Sbjct: 54  NPNPNSKPESSQPTFS-----PNDFTLISTLFTNPSISPGSSLLTNLTQTGIKPTPPLLH 108

Query: 72  QVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAI------K 125
            V     S P      + W+  Q   K     ++ V++ L K   FD  W  +       
Sbjct: 109 AVFDHFASSPKLLHSLYLWALNQPGFKPDSSLFDSVINALAKMKEFDDAWSLVLDRIRRD 168

Query: 126 SMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSL----LSAIC 181
               E ++S+ TFA +   Y  A   K AI TF+  +      D  +  SL    + ++C
Sbjct: 169 DDDDEKLVSVGTFAIIIRRYARAGMHKAAIRTFEFAKDKKSIVDSVSEMSLFEILIDSLC 228

Query: 182 RDGKTIDAWQFL---RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDP 238
           ++G   +A ++L   +  D    P    Y I+L GW + R + +A++ + EM  E     
Sbjct: 229 KEGSAREASEYLLRRKETDLGWVPSIRVYNIMLNGWFRARKLKHAERLWEEMKNE----- 283

Query: 239 DNV-PAYDSYLITLLKG---CDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLR 294
            NV P+  +Y  TL++G      + + +  +  M + G  P    +    +        +
Sbjct: 284 -NVRPSVVTY-GTLVEGYCRMRRVEKALEMVGEMTKEGIKPNAIVYNPIIDALAEAGRFK 341

Query: 295 GAEFIWGAM----VGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQT 350
            A    G M    V +IG  P    YN ++  +C + +   A K+L +M+  G  P   T
Sbjct: 342 EA---LGMMERFHVLQIG--PTLSTYNSLVKGFCKAGDIEGASKILKKMISRGFLPIPTT 396

Query: 351 YNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMI 410
           YN  F +  +  K+ E   L+ +M+++ +  +       +++  + +   +A++    M 
Sbjct: 397 YNYFFRYFSRCGKVDEGMNLYTKMIESGHNPDRLTYHLVLKMLCEEEKLELAVQVSMEMR 456

Query: 411 -ENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKE 469
            + +  DL+ T  +L   LC MH L EA    + M  +GI        KL    ++ +K+
Sbjct: 457 HKGYDMDLA-TSTMLTHLLCKMHKLEEAFAEFEDMIRRGIIPQYLTFQKLN---VELKKQ 512

Query: 470 AVYEELLKKC 479
            + E   K C
Sbjct: 513 GMNEMARKLC 522


>gi|134302847|gb|ABO70667.1| restorer-of-fertility [Raphanus sativus]
          Length = 687

 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 85/353 (24%), Positives = 145/353 (41%), Gaps = 46/353 (13%)

Query: 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSL----ATFASVFSSYVVADRVKDAITT 157
           Y++N+++      C    +  A+ +  K   L L     TF ++     V DRV +A+  
Sbjct: 115 YSFNILIKCF---CSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALNL 171

Query: 158 FDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEK 216
           F  M +  C+ +V    +L++ +CR+G+ ++A   L R+++  ++P   TY  +++G  K
Sbjct: 172 FHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCK 231

Query: 217 ERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPG 276
           + D  +A     +M  EV     NV  Y + + +L K  DG +    +L   M+      
Sbjct: 232 KGDTVSALNLLRKME-EVSHIIPNVVIYSAIIDSLCK--DGRHSDAQNLFTEMQEK---- 284

Query: 277 MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLL 336
                                          G  PD   YN MI  +C S     A +LL
Sbjct: 285 -------------------------------GIFPDLFTYNSMIVGFCSSGRWSDAEQLL 313

Query: 337 DEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDS 396
            EM+     PD+ TYN L    VK  K +EA  L++EM+    + N     + +  +   
Sbjct: 314 QEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQ 373

Query: 397 DDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
           +    A   +  M    CS    T N L+ G C    + + ++    M E G+
Sbjct: 374 NRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGL 426



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 82/318 (25%), Positives = 142/318 (44%), Gaps = 31/318 (9%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           ++  ++++  S     R  DA   F  M++ G   D+F  NS++   C  G+  DA Q L
Sbjct: 254 NVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLL 313

Query: 194 R-VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
           + +++ +I PD  TY  L+  + KE     A++ + EM+   G  P+ +  Y S +    
Sbjct: 314 QEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPR-GIIPNTI-TYSSMIDGFC 371

Query: 253 KGCDGIYETVNSLKRMMERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRP 311
           K  + +    +    M  +GC+P + TF  L    C   +   G E +    +   G   
Sbjct: 372 KQ-NRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHE--MTETGLVA 428

Query: 312 DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLF 371
           DT  YN +I  +    +  AA+ LL EM+ +G  PDI T + L + L    KL +A  +F
Sbjct: 429 DTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMF 488

Query: 372 NEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDM 431
             M K++  L             D+  P+  ++           D+ +T N+L++GL + 
Sbjct: 489 KVMQKSKKDL-------------DASHPFNGVE----------PDV-QTYNILISGLINE 524

Query: 432 HMLPEAVKYAKGMAEKGI 449
               EA +  + M  +GI
Sbjct: 525 GKFLEAEELYEEMPHRGI 542



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 62/240 (25%), Positives = 101/240 (42%), Gaps = 31/240 (12%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RV 195
           T++S+   +   +R+  A   F +M   GC  ++   N+L+   C   +  D  + L  +
Sbjct: 362 TYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEM 421

Query: 196 VDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG- 254
            +  +  D  TY  L+ G+    D+  A     EM I  G  PD V        TLL G 
Sbjct: 422 TETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEM-ISSGLCPDIVTCD-----TLLDGL 475

Query: 255 CDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTH 314
           CD        LK  +E         FK+  +   + ++L  +    G         PD  
Sbjct: 476 CDN-----GKLKDALE--------MFKVMQK---SKKDLDASHPFNGV-------EPDVQ 512

Query: 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
            YN++IS      +   A +L +EM + G  PD  TY+ + + L K  +L EA+ +F+ M
Sbjct: 513 TYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSM 572



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 57/256 (22%), Positives = 99/256 (38%), Gaps = 18/256 (7%)

Query: 132 VLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ 191
           V    T+ ++   + +   +  A+     M   G   D+   ++LL  +C +GK  DA +
Sbjct: 427 VADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALE 486

Query: 192 FLRVVD------------GRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPD 239
             +V+               ++PD  TY IL+ G   E     A++ + EM    G  PD
Sbjct: 487 MFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMP-HRGIVPD 545

Query: 240 NVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGM-TFFKLAFEECLTGQNLRGAEF 298
            +  Y S +  L K    + E       M  +  +P + TF  L    C  G+   G E 
Sbjct: 546 TI-TYSSMIDGLCKQ-SRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLEL 603

Query: 299 IWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFL 358
                +GR G   +   Y  +I  +        A+ +  EM+ +G +PD  T   +   L
Sbjct: 604 F--CEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGL 661

Query: 359 VKGRKLWEASGLFNEM 374
               +L  A  +  ++
Sbjct: 662 WSKEELKRAVAMLEKL 677


>gi|226495005|ref|NP_001148062.1| GTP binding protein [Zea mays]
 gi|195615570|gb|ACG29615.1| GTP binding protein [Zea mays]
          Length = 535

 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 86/400 (21%), Positives = 173/400 (43%), Gaps = 10/400 (2%)

Query: 57  VLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCL 116
           VL + ++ + ++ +  VL+   S+   A+ FF W+A      H   A+  ++D+LG+   
Sbjct: 100 VLHQFMVHMDEDIILMVLQKQRSNWQVALAFFNWAATLPGYAHGSRAYTEMLDILGRMKK 159

Query: 117 FDAM---WDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFAL 173
              M   +D I   +++ V++   FA + + Y  A +V++AI  F + + YG + D+   
Sbjct: 160 VRHMRQLFDEIPEERRQVVVTNKMFAVLLNRYAGAHKVQEAIEVFYLRKDYGFELDLVGF 219

Query: 174 NSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIE 233
             LL ++CR     +A    R           ++ I+L GW  +  + +A++ + +++  
Sbjct: 220 QILLMSLCRYKHVEEAEALFREKKDEFPHVTKSWNIILNGWCVKGSLRDAQRIWNDII-- 277

Query: 234 VGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNL 293
                 ++  + +++  L K    I   V   K+M E+G NP +       ++    + +
Sbjct: 278 ASKVERDLFTFGTFINALAKN-GRISAAVKLFKQMWEKGINPDVAICNCIIDQLCFKKKI 336

Query: 294 RGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNI 353
             A  I+G M  R+  + D   YN +I   C         +LLD+M   G  P+ +TY+ 
Sbjct: 337 PEALEIFGEMNDRLC-QADVATYNTLIKYMCKIKRMEKVYELLDDMEAKGCSPNNRTYSY 395

Query: 354 LFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENH 413
           + +   K +   +   L   M ++   L+ +     + +Y+         + W  M    
Sbjct: 396 ILKTTEKPK---DVIALMQRMERSGCKLDSDMYNLILNLYIKWKYEKGMQQIWDEMERRG 452

Query: 414 CSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTP 453
                 +  ++V GL     L EA++Y   M  +G+   P
Sbjct: 453 SGPDQRSFTIMVHGLHSQGKLDEALQYYTTMKSRGMIPEP 492


>gi|357149641|ref|XP_003575182.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 557

 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 93/386 (24%), Positives = 166/386 (43%), Gaps = 43/386 (11%)

Query: 102 YAWN-LVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDV 160
           Y +N L+  L G+    +A+      +++  V  + T+  +  +       K A+   D 
Sbjct: 157 YTYNTLIRGLCGRGRTGNALVVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAMKLLDE 216

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERD 219
           M   GC  D+   N +++ IC++G+  DA +FL+ +     +P+  +Y I+L+G      
Sbjct: 217 MRAKGCAPDIITYNVVVNGICQEGRVDDAIEFLKSLPSHGCEPNTVSYNIVLKGLCTAER 276

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNP-GMT 278
             +A+K   EM  + G+ P NV  ++  LI+ L     +   +  L ++ + GC P  ++
Sbjct: 277 WEDAEKLMAEMS-QKGYPP-NVVTFN-MLISFLCRRGLVEPAMEVLDQIPKYGCTPNSLS 333

Query: 279 FFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDE 338
           +  +    C   +  R   F+   MV R G  PD   YN +++  C   E  AA++LL +
Sbjct: 334 YNPILHAFCKQKKMDRAMAFVE-LMVSR-GCYPDIVSYNTLLTALCRGGEVDAAVELLHQ 391

Query: 339 MVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK---NENVLNHEN-----CR--- 387
           +   G  P + +YN + + L K  K  EA  L NEMV      +++ +       CR   
Sbjct: 392 LKDKGCTPVLISYNTVIDGLTKAGKTKEALELLNEMVTKGLQPDIITYSTISSGLCREDR 451

Query: 388 --AAVRVYMDSDDPYV----------------------AIKFWKYMIENHCSDLSETGNL 423
              A+R +    D  +                      AI  + YMI N C     T  +
Sbjct: 452 IEEAIRAFCKVQDMGIRPNTVLYNAILLGLCKRRETHNAIDLFIYMISNGCMPNESTYTI 511

Query: 424 LVAGLCDMHMLPEAVKYAKGMAEKGI 449
           L+ GL    ++ EA +    +  +G+
Sbjct: 512 LIEGLTYEGLVKEARELLGELCSRGV 537



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 79/317 (24%), Positives = 135/317 (42%), Gaps = 12/317 (3%)

Query: 165 GCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAK 224
            C+ DV A N++++  C  G+ +DA + L V D  ++PD+ TY  L+ G        NA 
Sbjct: 119 ACEPDVMAYNAMVAGYCVTGQ-LDAARRL-VADMPMEPDSYTYNTLIRGLCGRGRTGNAL 176

Query: 225 KTFGEMVIEVGWDPDNVPAYDSYLITLLKGC--DGIYETVNSLKRMMERGCNPGMTFFKL 282
               +M +  G  PD V    +Y I L   C   G  + +  L  M  +GC P +  + +
Sbjct: 177 VVLDDM-LRRGCVPDVV----TYTILLEATCKRSGYKQAMKLLDEMRAKGCAPDIITYNV 231

Query: 283 AFEE-CLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVY 341
                C  G+     EF+    +   G  P+T  YN+++   C +     A KL+ EM  
Sbjct: 232 VVNGICQEGRVDDAIEFLKS--LPSHGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSQ 289

Query: 342 NGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYV 401
            G  P++ T+N+L  FL +   +  A  + +++ K     N  +    +  +        
Sbjct: 290 KGYPPNVVTFNMLISFLCRRGLVEPAMEVLDQIPKYGCTPNSLSYNPILHAFCKQKKMDR 349

Query: 402 AIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQ 461
           A+ F + M+   C     + N L+  LC    +  AV+    + +KG      + + +  
Sbjct: 350 AMAFVELMVSRGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVID 409

Query: 462 ILIKARKEAVYEELLKK 478
            L KA K     ELL +
Sbjct: 410 GLTKAGKTKEALELLNE 426



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 75/325 (23%), Positives = 134/325 (41%), Gaps = 39/325 (12%)

Query: 104 WNLVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASVFSSYVVADRVKDAITTFDVME 162
           +N+VV+ + +    D   + +KS+       +  ++  V      A+R +DA      M 
Sbjct: 229 YNVVVNGICQEGRVDDAIEFLKSLPSHGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMS 288

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERDVA 221
           Q G   +V   N L+S +CR G    A + L ++      P++ +Y  +L  + K++ + 
Sbjct: 289 QKGYPPNVVTFNMLISFLCRRGLVEPAMEVLDQIPKYGCTPNSLSYNPILHAFCKQKKMD 348

Query: 222 NAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFK 281
            A   F E+++  G  PD V +Y++ L  L +G + +   V  L ++ ++GC P +  + 
Sbjct: 349 RAM-AFVELMVSRGCYPDIV-SYNTLLTALCRGGE-VDAAVELLHQLKDKGCTPVLISYN 405

Query: 282 LAFEECLTGQNLRGAEFIWGAMVGR----------------------------------I 307
              +        + A  +   MV +                                  +
Sbjct: 406 TVIDGLTKAGKTKEALELLNEMVTKGLQPDIITYSTISSGLCREDRIEEAIRAFCKVQDM 465

Query: 308 GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEA 367
           G RP+T +YN ++   C   ET  A+ L   M+ NG  P+  TY IL E L     + EA
Sbjct: 466 GIRPNTVLYNAILLGLCKRRETHNAIDLFIYMISNGCMPNESTYTILIEGLTYEGLVKEA 525

Query: 368 SGLFNEMVKNENVLNHENCRAAVRV 392
             L  E+     V      +AA+R+
Sbjct: 526 RELLGELCSRGVVSKGLINKAAIRL 550



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 69/247 (27%), Positives = 105/247 (42%), Gaps = 30/247 (12%)

Query: 211 LEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMME 270
           L G  +  D+  A +    M    G +P   P   + LI  L       E      R + 
Sbjct: 66  LRGLVRRGDLEEALRLVESMS---GLEPSAAPGPCAALIKKLCASGRTAEA-----RRVL 117

Query: 271 RGCNPG-MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNET 329
             C P  M +  +    C+TGQ L  A      +V  +   PD++ YN +I   C    T
Sbjct: 118 AACEPDVMAYNAMVAGYCVTGQ-LDAAR----RLVADMPMEPDSYTYNTLIRGLCGRGRT 172

Query: 330 GAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM--------VKNENVL 381
           G A+ +LD+M+  G  PD+ TY IL E   K     +A  L +EM        +   NV+
Sbjct: 173 GNALVVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRAKGCAPDIITYNVV 232

Query: 382 NHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYA 441
            +  C+   RV    DD   AI+F K +  + C   + + N+++ GLC      +A K  
Sbjct: 233 VNGICQEG-RV----DD---AIEFLKSLPSHGCEPNTVSYNIVLKGLCTAERWEDAEKLM 284

Query: 442 KGMAEKG 448
             M++KG
Sbjct: 285 AEMSQKG 291


>gi|255556466|ref|XP_002519267.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541582|gb|EEF43131.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 665

 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 83/297 (27%), Positives = 132/297 (44%), Gaps = 16/297 (5%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           T+  +  +    +RV  A      M   GC+ DV +  +++S++ + GK  +A    R +
Sbjct: 186 TYNILLKALCKNNRVDGACKLLVEMSNKGCEPDVVSYTTVISSMSKLGKVEEA----REL 241

Query: 197 DGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD 256
             R +P+   Y  L+ G+ +E  V       G+MV E G DP NV  Y S +I+ L G  
Sbjct: 242 SIRFQPNVSVYNALINGFCREYKVKEVFLLLGQMV-EKGIDP-NVITY-STVISSLSGIG 298

Query: 257 GIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRG----AEFIWGAMVGRIGFRPD 312
            +   +    +M  RGC+P +      F   + G  +RG    A  IW  M    GF P+
Sbjct: 299 NVELALAVWAKMFVRGCSPNV----YTFTSLMKGYFMRGRVLEALNIWNRMAEE-GFEPN 353

Query: 313 THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFN 372
              YN +I   C   + G A+ +  +M  NG  P++ TY  L +   K   L  AS ++N
Sbjct: 354 VVAYNTLIHGLCSHGKMGEAVSVSSKMERNGCSPNVSTYGALIDGFAKAGDLVGASEIWN 413

Query: 373 EMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLC 429
           +M+ N  + N     + V V   S     A    + M  ++C   + T N  + GLC
Sbjct: 414 KMMTNGCIPNVVVYTSMVNVLCRSSMFSQAWSLIEKMSTDNCPPNTVTFNTFIKGLC 470



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 86/390 (22%), Positives = 155/390 (39%), Gaps = 44/390 (11%)

Query: 84  AVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASVF 142
           A  +FR  A     +H+   + ++++ LG+ C  D +   ++ MK E +  S   F +V 
Sbjct: 62  ASNYFRSIANSKAFQHTQLTYQIMIEKLGRECDVDGVQYLLQQMKLEGISCSEDLFINVI 121

Query: 143 SSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV------ 196
           ++Y      + A+  F  + ++GC+  V   N LL A+  + +    +Q +  +      
Sbjct: 122 NTYRRVGLAEQALKMFYRIREFGCQPTVKIYNHLLDAMLSENR----FQMIEPIYSNMKR 177

Query: 197 DGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPD----------------- 239
           DG+ +P+  TY ILL+   K   V  A K   EM  + G +PD                 
Sbjct: 178 DGK-EPNVYTYNILLKALCKNNRVDGACKLLVEMSNK-GCEPDVVSYTTVISSMSKLGKV 235

Query: 240 ------------NVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEEC 287
                       NV  Y++ +    +    + E    L +M+E+G +P +  +       
Sbjct: 236 EEARELSIRFQPNVSVYNALINGFCREYK-VKEVFLLLGQMVEKGIDPNVITYSTVISSL 294

Query: 288 LTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPD 347
               N+  A  +W  M  R G  P+ + +  ++  Y        A+ + + M   G  P+
Sbjct: 295 SGIGNVELALAVWAKMFVR-GCSPNVYTFTSLMKGYFMRGRVLEALNIWNRMAEEGFEPN 353

Query: 348 IQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWK 407
           +  YN L   L    K+ EA  + ++M +N    N     A +  +  + D   A + W 
Sbjct: 354 VVAYNTLIHGLCSHGKMGEAVSVSSKMERNGCSPNVSTYGALIDGFAKAGDLVGASEIWN 413

Query: 408 YMIENHCSDLSETGNLLVAGLCDMHMLPEA 437
            M+ N C         +V  LC   M  +A
Sbjct: 414 KMMTNGCIPNVVVYTSMVNVLCRSSMFSQA 443



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 76/323 (23%), Positives = 135/323 (41%), Gaps = 22/323 (6%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           TF S+   Y +  RV +A+  ++ M + G + +V A N+L+  +C  GK  +A      +
Sbjct: 321 TFTSLMKGYFMRGRVLEALNIWNRMAEEGFEPNVVAYNTLIHGLCSHGKMGEAVSVSSKM 380

Query: 197 D-GRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
           +     P+  TY  L++G+ K  D+  A + + +M+   G  P NV  Y S ++ +L   
Sbjct: 381 ERNGCSPNVSTYGALIDGFAKAGDLVGASEIWNKMMTN-GCIP-NVVVYTS-MVNVLCRS 437

Query: 256 DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHM 315
               +  + +++M    C P    F    +       +  A  ++  M  + G  P+   
Sbjct: 438 SMFSQAWSLIEKMSTDNCPPNTVTFNTFIKGLCCSGRVECAINLFCQM-EQYGCSPNIKT 496

Query: 316 YNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
           YN ++      N    A++L+ EM   G   ++ TYN +F       K  EA  L  +M+
Sbjct: 497 YNEVLDGLLKENRIKEALELVTEMEEKGMELNLVTYNTIFGGFCNVGKFEEALKLLGKML 556

Query: 376 KNE--------NVLNHENC-RAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVA 426
                      N L +  C +  V+  +   D   A   W   +  + S        L+ 
Sbjct: 557 VGGVKPDAITYNTLTYAYCMQGKVKTAIQLLDKLSAGGKWVPEVAAYTS--------LLW 608

Query: 427 GLCDMHMLPEAVKYAKGMAEKGI 449
           G+C+   + EAV Y   M  +GI
Sbjct: 609 GICNQIGVEEAVLYLDKMLNEGI 631



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/205 (23%), Positives = 82/205 (40%), Gaps = 43/205 (20%)

Query: 107 VVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVMEQYG 165
           +V++L ++ +F   W  I+ M  +N   +  TF +       + RV+ AI  F  MEQYG
Sbjct: 430 MVNVLCRSSMFSQAWSLIEKMSTDNCPPNTVTFNTFIKGLCCSGRVECAINLFCQMEQYG 489

Query: 166 CKHDV-----------------------------------FALNSLLSAICRDGKTIDAW 190
           C  ++                                      N++    C  GK  +A 
Sbjct: 490 CSPNIKTYNEVLDGLLKENRIKEALELVTEMEEKGMELNLVTYNTIFGGFCNVGKFEEAL 549

Query: 191 QFL-RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLI 249
           + L +++ G +KPD  TY  L   +  +  V  A +   ++     W P+ V AY S L 
Sbjct: 550 KLLGKMLVGGVKPDAITYNTLTYAYCMQGKVKTAIQLLDKLSAGGKWVPE-VAAYTSLLW 608

Query: 250 TLLKGCD--GIYETVNSLKRMMERG 272
            +   C+  G+ E V  L +M+  G
Sbjct: 609 GI---CNQIGVEEAVLYLDKMLNEG 630



 Score = 40.4 bits (93), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 60/134 (44%), Gaps = 3/134 (2%)

Query: 103 AWNLVVD-LLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVM 161
            +N V+D LL +N + +A+    +  +K   L+L T+ ++F  +    + ++A+     M
Sbjct: 496 TYNEVLDGLLKENRIKEALELVTEMEEKGMELNLVTYNTIFGGFCNVGKFEEALKLLGKM 555

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVD--GRIKPDNDTYAILLEGWEKERD 219
              G K D    N+L  A C  GK   A Q L  +   G+  P+   Y  LL G   +  
Sbjct: 556 LVGGVKPDAITYNTLTYAYCMQGKVKTAIQLLDKLSAGGKWVPEVAAYTSLLWGICNQIG 615

Query: 220 VANAKKTFGEMVIE 233
           V  A     +M+ E
Sbjct: 616 VEEAVLYLDKMLNE 629


>gi|147865347|emb|CAN84084.1| hypothetical protein VITISV_018999 [Vitis vinifera]
          Length = 561

 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 99/433 (22%), Positives = 171/433 (39%), Gaps = 20/433 (4%)

Query: 54  VEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGK 113
           +E  L    I ++ + V +V           V FF W+  Q         +N+++  LG+
Sbjct: 119 IELALTNVGIDLTIDIVSEVXNRGNLGGEAMVXFFNWAVKQPTIPKDVDTYNVIIKALGR 178

Query: 114 NCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFA 172
               +     +K M  + +  +  T + V  S++ A +V  AI  F  +E++G K D  +
Sbjct: 179 RKFIEFXVXVLKDMHIQGISPNYETLSIVMDSFIKARQVSKAIEMFRNLEEFGGKCDTES 238

Query: 173 LNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVI 232
           LN LL  +C+      A  F   + G I  +  TY I++ GW K   +   ++    MV 
Sbjct: 239 LNVLLQCLCQRSHVGAANLFFNAMKGGIPFNCMTYNIIIGGWSKYGKIGEMERCLKAMVA 298

Query: 233 EVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQN 292
           + G+ P+ +    S+LI  L     I + V     M E GC P    +       ++ ++
Sbjct: 299 D-GFSPNCLTF--SHLIEGLGRAGRIDDAVEVFHHMEETGCVPNACVYNALISNFISTRD 355

Query: 293 LRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYN 352
                  +  MV      P+   Y  +I  +  + +   A+++LDEMV  G  P      
Sbjct: 356 FDECLKYYNFMVSS-NCDPNMDTYTKLIVAFLKARKVADALEMLDEMVGRGMIPTTGAIT 414

Query: 353 ILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVY-------MDSDDPYVAIKF 405
              E L +      A  ++ +  K         CR ++  Y              + +  
Sbjct: 415 SFIEPLCQYGPPHAAMMIYKKARK-------VGCRISLSAYKLLLMRLSRFGKCGMLLNL 467

Query: 406 WKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIK 465
           W  M E+  S  +E    ++ GLC++  L  AV   +    KG   +    SKL   L+ 
Sbjct: 468 WDEMQESGYSSDTEVYEYVINGLCNIGQLDTAVLVMEESLXKGFCPSRLIRSKLNNKLLA 527

Query: 466 ARK-EAVYEELLK 477
           + K E  Y+  LK
Sbjct: 528 SNKVEMAYKLFLK 540


>gi|297807171|ref|XP_002871469.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317306|gb|EFH47728.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 602

 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 104/428 (24%), Positives = 174/428 (40%), Gaps = 24/428 (5%)

Query: 38  TIKTLCEIIANTPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLND 97
           TI  L E     P  ++E  LD+T I  S + V+ +     S P      F+W+  +   
Sbjct: 72  TISNLLENTNVVPGSSLESALDETGIEPSLQLVQALFDRLSSSPMLLHSVFKWAEMKPGF 131

Query: 98  KHSPYAWNLVVDLLGKNCLFDAMW----DAIKSMKKENVLSLATFASVFSSYVVADRVKD 153
             SP  ++ V++ L K   F+  W    D ++S +  N++S  TF  +   Y  A  V+ 
Sbjct: 132 TLSPSLFDSVINSLCKAREFEIAWSLVFDRVRSDEGSNLVSADTFIVLIRRYARAGMVQQ 191

Query: 154 AITTFDVMEQYG--CK--HDVFALNSLLSAICRDGKTIDAWQFLR----VVDGRIKPDND 205
           AI  F+    Y   CK   ++  L  LL A+C++G   +A  +L     ++D    P   
Sbjct: 192 AIRAFEFARSYEPVCKSASELKLLEVLLDALCKEGYVREASVYLERRRGMMDSNWVPSVR 251

Query: 206 TYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG-CDGIYETVNS 264
            + ILL GW + R +  A+K + EM         NV        TL++G C      V  
Sbjct: 252 IFNILLNGWFRSRKLKQAEKLWEEM------KAMNVKPTVVTYGTLIEGYCR--MRRVEI 303

Query: 265 LKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGF---RPDTHMYNMMIS 321
              ++E      M    + F   + G    G       M+ R       P    YN ++ 
Sbjct: 304 AMEILEEMKMAEMELTFMVFNPIIDGLGEAGRLSEALGMMERFFVCESGPTIVTYNSLVK 363

Query: 322 LYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVL 381
            +C + +   A K+L  M+  G  P   TYN  F++  K  K  E   L+ ++++  +  
Sbjct: 364 NFCKAGDLPGASKILKMMMTRGVEPTTSTYNHFFKYFSKHNKTEEGMNLYFKLIEAGHSP 423

Query: 382 NHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYA 441
           +       +++  +     +AI+  K M          T  +L+  LC + ML EA +  
Sbjct: 424 DRLTYHLILKMLCEDGKLSLAIQVNKEMKNRGIDPDLLTTTMLMHLLCRLDMLEEAFEEF 483

Query: 442 KGMAEKGI 449
                +GI
Sbjct: 484 DNAVRRGI 491



 Score = 42.4 bits (98), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 48/238 (20%), Positives = 96/238 (40%), Gaps = 7/238 (2%)

Query: 118 DAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLL 177
           + +W+ +K+M  +   ++ T+ ++   Y    RV+ A+   + M+    +      N ++
Sbjct: 270 EKLWEEMKAMNVKP--TVVTYGTLIEGYCRMRRVEIAMEILEEMKMAEMELTFMVFNPII 327

Query: 178 SAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGW 236
             +   G+  +A   + R       P   TY  L++ + K  D+  A K   +M++  G 
Sbjct: 328 DGLGEAGRLSEALGMMERFFVCESGPTIVTYNSLVKNFCKAGDLPGASKIL-KMMMTRGV 386

Query: 237 DPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGA 296
           +P     Y+ +     K  +   E +N   +++E G +P    + L  +       L  A
Sbjct: 387 EP-TTSTYNHFFKYFSKH-NKTEEGMNLYFKLIEAGHSPDRLTYHLILKMLCEDGKLSLA 444

Query: 297 EFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNIL 354
             +   M  R G  PD     M++ L C  +    A +  D  V  G  P   T+ ++
Sbjct: 445 IQVNKEMKNR-GIDPDLLTTTMLMHLLCRLDMLEEAFEEFDNAVRRGIIPQYITFKMI 501


>gi|297839881|ref|XP_002887822.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333663|gb|EFH64081.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 407

 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 100/403 (24%), Positives = 168/403 (41%), Gaps = 42/403 (10%)

Query: 67  QETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKS 126
           Q+TV + L    +    A++FF W   +   +H+   +N ++D+LGK   F+  W  I  
Sbjct: 7   QKTVCEALSCYINDWQKALEFFNWVEKESGFRHTTETFNRMIDILGKYFEFETCWALINR 66

Query: 127 M--KKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDG 184
           M    E++ +  TF  VF  YV A  V++AI  +D ++ +  + D  +  +L+ A+C   
Sbjct: 67  MIGNPESLPNHVTFRIVFKRYVTAHLVQEAIDAYDKLDDFNLRDDT-SFYNLVDALCEHK 125

Query: 185 KTIDAWQFL----RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDN 240
             ++A +       +  G    +   + ++L GW K       K+ + +M  E    P +
Sbjct: 126 HVVEAEELCFGKNVIAHGFSVSNTKIHNLILRGWSKLGWWGKCKEYWDKMDTEGV--PKD 183

Query: 241 VPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIW 300
           + +Y  Y+  + K     ++ V   K M  R     +  +          Q +     ++
Sbjct: 184 LFSYSIYMDIMCKS-GKPWKAVKLYKEMKSRRIKLDVVAYNTVIRAIGASQGVEFGIRVF 242

Query: 301 GAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVK 360
             M  R G  P+   +N +I L C       A ++LDEM   G  PD  +Y  LF  L K
Sbjct: 243 REMRER-GCEPNVATHNTIIKLLCEDGRMRDAYRMLDEMPKKGCQPDSISYMCLFSRLEK 301

Query: 361 GRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAI--KF------------W 406
                E   LF  M+           R+ VR  MD+   YV +  KF            W
Sbjct: 302 PS---EILSLFGRMI-----------RSGVRPKMDT---YVMLMRKFERWGFLQPVLYVW 344

Query: 407 KYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
           K M E+  +  S   N ++  L    ML  A +Y + M E+G+
Sbjct: 345 KTMKESGDTPDSAAYNAVIDALIQKGMLDMAREYEEEMIERGL 387



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 52/255 (20%), Positives = 102/255 (40%), Gaps = 19/255 (7%)

Query: 215 EKERDVANAKKTFGEMV--------IEVGW--------DPDNVPAYDSYLITLLKGCDG- 257
           EKE    +  +TF  M+         E  W        +P+++P + ++ I   +     
Sbjct: 32  EKESGFRHTTETFNRMIDILGKYFEFETCWALINRMIGNPESLPNHVTFRIVFKRYVTAH 91

Query: 258 -IYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFR-PDTHM 315
            + E +++  ++ +       +F+ L    C     +   E  +G  V   GF   +T +
Sbjct: 92  LVQEAIDAYDKLDDFNLRDDTSFYNLVDALCEHKHVVEAEELCFGKNVIAHGFSVSNTKI 151

Query: 316 YNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
           +N+++  +      G   +  D+M   G   D+ +Y+I  + + K  K W+A  L+ EM 
Sbjct: 152 HNLILRGWSKLGWWGKCKEYWDKMDTEGVPKDLFSYSIYMDIMCKSGKPWKAVKLYKEMK 211

Query: 376 KNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLP 435
                L+       +R    S      I+ ++ M E  C     T N ++  LC+   + 
Sbjct: 212 SRRIKLDVVAYNTVIRAIGASQGVEFGIRVFREMRERGCEPNVATHNTIIKLLCEDGRMR 271

Query: 436 EAVKYAKGMAEKGIQ 450
           +A +    M +KG Q
Sbjct: 272 DAYRMLDEMPKKGCQ 286



 Score = 48.1 bits (113), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 52/250 (20%), Positives = 100/250 (40%), Gaps = 50/250 (20%)

Query: 102 YAWNLVVDLLGKNCLFDAMWDAIK---SMKKENV-LSLATFASVFSSYVVADRVKDAITT 157
           +++++ +D++   C     W A+K    MK   + L +  + +V  +   +  V+  I  
Sbjct: 185 FSYSIYMDIM---CKSGKPWKAVKLYKEMKSRRIKLDVVAYNTVIRAIGASQGVEFGIRV 241

Query: 158 FDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEK 216
           F  M + GC+ +V   N+++  +C DG+  DA++ L  +  +  +PD+ +Y  L    EK
Sbjct: 242 FREMRERGCEPNVATHNTIIKLLCEDGRMRDAYRMLDEMPKKGCQPDSISYMCLFSRLEK 301

Query: 217 ERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPG 276
             ++ +    FG M+          P  D+Y++ + K                       
Sbjct: 302 PSEILS---LFGRMI-----RSGVRPKMDTYVMLMRK----------------------- 330

Query: 277 MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLL 336
             F +  F        L+   ++W  M    G  PD+  YN +I           A +  
Sbjct: 331 --FERWGF--------LQPVLYVWKTM-KESGDTPDSAAYNAVIDALIQKGMLDMAREYE 379

Query: 337 DEMVYNGAFP 346
           +EM+  G  P
Sbjct: 380 EEMIERGLSP 389


>gi|449483905|ref|XP_004156728.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g40400-like [Cucumis sativus]
          Length = 636

 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/301 (25%), Positives = 144/301 (47%), Gaps = 16/301 (5%)

Query: 100 SPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASVFSSYVVADRVKDAITTF 158
           + Y +N++  +L ++   + +   ++ M++E     + T+ ++  SYV   R++DA   +
Sbjct: 259 NAYTFNILTYVLCRDGDVNKINGFLEKMEEEGFDPDVVTYNTLIDSYVRRGRLEDAFYLY 318

Query: 159 DVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKE 217
            +M + G   D+ +  SL+  +CR G+  +A Q F R++D  + PD   Y  L+  + K+
Sbjct: 319 KIMYRRGVMPDLVSYTSLMRGLCRLGRVREAHQLFHRMIDRGMDPDVVLYNTLIGAYCKD 378

Query: 218 RDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDG-IYETVNSLKRMMERGCNPG 276
             +  A+    EM I +G  PD   ++   ++    G +G +   +N +  + + G    
Sbjct: 379 GMLQEARSLLHEM-IGIGIHPD---SFTCRILVEGYGREGRLISALNLVVEIQKLGVTVA 434

Query: 277 MTFFK-LAFEECLTGQNLRGAEFIWGAMVGRI---GFRPDTHMYNMMISLYCYSNETGAA 332
              +K L    C   +      F   +++ RI    F+PD+ +YN +I  +C SN    A
Sbjct: 435 HDIYKYLIISLCREDR-----PFAAKSLLERILEDSFQPDSDIYNKLIESFCRSNNVSEA 489

Query: 333 MKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRV 392
           + L  EM+     P   TY  L   + +  +  +  GL  EMV++E + +HE CRA V  
Sbjct: 490 LLLKLEMINRNYKPTTDTYKSLIHCMCEINRSVDGEGLMVEMVESEVIPDHEICRALVNG 549

Query: 393 Y 393
           Y
Sbjct: 550 Y 550



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 102/430 (23%), Positives = 178/430 (41%), Gaps = 30/430 (6%)

Query: 47  ANTPSPTVEDVLDKTLI-RVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWN 105
            N P   +     K LI  +    + ++L    S+   A+ FF W  Y L+ + S + + 
Sbjct: 81  TNNPRLALLQSHIKELIPHLGHRQISKILLRCQSNFVSALAFFNWVKYDLDIRLSSHNYC 140

Query: 106 LVVDLLGKNCLFDAMWDAIKSM--------KKENV---LSLAT---------FASVFSSY 145
           L++ +L  +  F      +  +          E+V   L L T         F  +  +Y
Sbjct: 141 LIIHILAWSRQFPLAMKFLSELIELSKDVSSSEDVFQNLVLCTEHCNWNPVIFEMLIKAY 200

Query: 146 VVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDND 205
           V  D + ++  +F  M + G   +V A N +L+ + +       W+    + GRI   ++
Sbjct: 201 VKLDLIHESYWSFKKMVKLGFVPNVIACNCILNGLAKMKSDAQCWELYEEM-GRIGVHSN 259

Query: 206 TYAILLEGWEKERDV-ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNS 264
            Y   +  +   RD   N    F E + E G+DPD V  Y++ + + ++   G  E    
Sbjct: 260 AYTFNILTYVLCRDGDVNKINGFLEKMEEEGFDPD-VVTYNTLIDSYVR--RGRLEDAFY 316

Query: 265 LKRMM-ERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISL 322
           L ++M  RG  P + ++  L    C  G+ +R A  ++  M+ R G  PD  +YN +I  
Sbjct: 317 LYKIMYRRGVMPDLVSYTSLMRGLCRLGR-VREAHQLFHRMIDR-GMDPDVVLYNTLIGA 374

Query: 323 YCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLN 382
           YC       A  LL EM+  G  PD  T  IL E   +  +L  A  L  E+ K    + 
Sbjct: 375 YCKDGMLQEARSLLHEMIGIGIHPDSFTCRILVEGYGREGRLISALNLVVEIQKLGVTVA 434

Query: 383 HENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAK 442
           H+  +  +      D P+ A    + ++E+     S+  N L+   C  + + EA+    
Sbjct: 435 HDIYKYLIISLCREDRPFAAKSLLERILEDSFQPDSDIYNKLIESFCRSNNVSEALLLKL 494

Query: 443 GMAEKGIQVT 452
            M  +  + T
Sbjct: 495 EMINRNYKPT 504


>gi|449450197|ref|XP_004142850.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g40400-like [Cucumis sativus]
          Length = 632

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/301 (25%), Positives = 144/301 (47%), Gaps = 16/301 (5%)

Query: 100 SPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASVFSSYVVADRVKDAITTF 158
           + Y +N++  +L ++   + +   ++ M++E     + T+ ++  SYV   R++DA   +
Sbjct: 255 NAYTFNILTYVLCRDGDVNKINGFLEKMEEEGFDPDVVTYNTLIDSYVRRGRLEDAFYLY 314

Query: 159 DVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKE 217
            +M + G   D+ +  SL+  +CR G+  +A Q F R++D  + PD   Y  L+  + K+
Sbjct: 315 KIMYRRGVMPDLVSYTSLMRGLCRLGRVREAHQLFHRMIDRGMDPDVVLYNTLIGAYCKD 374

Query: 218 RDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDG-IYETVNSLKRMMERGCNPG 276
             +  A+    EM I +G  PD   ++   ++    G +G +   +N +  + + G    
Sbjct: 375 GMLQEARSLLHEM-IGIGIHPD---SFTCRILVEGYGREGRLISALNLVVEIQKLGVTVA 430

Query: 277 MTFFK-LAFEECLTGQNLRGAEFIWGAMVGRI---GFRPDTHMYNMMISLYCYSNETGAA 332
              +K L    C   +      F   +++ RI    F+PD+ +YN +I  +C SN    A
Sbjct: 431 HDIYKYLIISLCREDR-----PFAAKSLLERILEDSFQPDSDIYNKLIESFCRSNNVSEA 485

Query: 333 MKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRV 392
           + L  EM+     P   TY  L   + +  +  +  GL  EMV++E + +HE CRA V  
Sbjct: 486 LLLKLEMINRNYKPTTDTYKSLIHCMCEINRSVDGEGLMVEMVESEVIPDHEICRALVNG 545

Query: 393 Y 393
           Y
Sbjct: 546 Y 546



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 102/430 (23%), Positives = 178/430 (41%), Gaps = 30/430 (6%)

Query: 47  ANTPSPTVEDVLDKTLI-RVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWN 105
            N P   +     K LI  +    + ++L    S+   A+ FF W  Y L+ + S + + 
Sbjct: 77  TNNPRLALLQSHIKELIPHLGHRQISKILLRCQSNFVSALAFFNWVKYDLDIRLSSHNYC 136

Query: 106 LVVDLLGKNCLFDAMWDAIKSM--------KKENV---LSLAT---------FASVFSSY 145
           L++ +L  +  F      +  +          E+V   L L T         F  +  +Y
Sbjct: 137 LIIHILAWSRQFPLAMKFLSELIELSKDVSSSEDVFQNLVLCTEHCNWNPVIFEMLIKAY 196

Query: 146 VVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDND 205
           V  D + ++  +F  M + G   +V A N +L+ + +       W+    + GRI   ++
Sbjct: 197 VKLDLIHESYWSFKKMVKLGFVPNVIACNCILNGLAKMKSDAQCWELYEEM-GRIGVHSN 255

Query: 206 TYAILLEGWEKERDV-ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNS 264
            Y   +  +   RD   N    F E + E G+DPD V  Y++ + + ++   G  E    
Sbjct: 256 AYTFNILTYVLCRDGDVNKINGFLEKMEEEGFDPD-VVTYNTLIDSYVR--RGRLEDAFY 312

Query: 265 LKRMM-ERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISL 322
           L ++M  RG  P + ++  L    C  G+ +R A  ++  M+ R G  PD  +YN +I  
Sbjct: 313 LYKIMYRRGVMPDLVSYTSLMRGLCRLGR-VREAHQLFHRMIDR-GMDPDVVLYNTLIGA 370

Query: 323 YCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLN 382
           YC       A  LL EM+  G  PD  T  IL E   +  +L  A  L  E+ K    + 
Sbjct: 371 YCKDGMLQEARSLLHEMIGIGIHPDSFTCRILVEGYGREGRLISALNLVVEIQKLGVTVA 430

Query: 383 HENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAK 442
           H+  +  +      D P+ A    + ++E+     S+  N L+   C  + + EA+    
Sbjct: 431 HDIYKYLIISLCREDRPFAAKSLLERILEDSFQPDSDIYNKLIESFCRSNNVSEALLLKL 490

Query: 443 GMAEKGIQVT 452
            M  +  + T
Sbjct: 491 EMINRNYKPT 500


>gi|148906470|gb|ABR16388.1| unknown [Picea sitchensis]
          Length = 700

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 98/436 (22%), Positives = 188/436 (43%), Gaps = 51/436 (11%)

Query: 38  TIKTLCEIIANTPSPTVED-VLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLN 96
           T+  +C+ I       ++D  L+     ++ + V +VL    +    A++FF+W+  Q  
Sbjct: 153 TVNKICKAIEEDQWECLQDNFLNSMAQDLNPDAVVKVLNLQ-TDAQNALRFFQWADKQEG 211

Query: 97  DKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASVFSSYVVADRVKDAI 155
             H+  A+  ++D+LG+  +F  +   ++ M+ +   ++ +   S   SY  + R K+++
Sbjct: 212 YDHNTDAYFTMIDILGRAKMFTELQSLLQKMQTQGREITRSMLHSFVMSYGRSGRFKESL 271

Query: 156 TTFDVMEQYGCKHDVF--ALNSLLSAICRDGKTIDAWQ--FLRVVDGRIKPDNDTYAILL 211
             F++M++ G +  +   A NS+L ++ ++ K +D  +  F ++++  +  +N TY  ++
Sbjct: 272 EAFNLMKEMGYEPGLIDTAYNSVLVSLVKN-KKLDMAENLFAQMINNGVSCNNLTYTSMI 330

Query: 212 EGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDG--IYETVNSLKRMM 269
           + +  +  + +A K   +M I+  + PD V    +Y I +   C    I +    L++M 
Sbjct: 331 QCFFLKEKMEDAMKLLDDM-IQNNYAPDVV----TYTIVISALCKRKMIEQAYGVLQKMR 385

Query: 270 ERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNET 329
           E GC                                     P+ + YN +I   C     
Sbjct: 386 ENGC------------------------------------EPNIYTYNALIQGLCAVRRP 409

Query: 330 GAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAA 389
             A++L+  M   G  P+I TY IL   L K R+L  A  +FNE +      N       
Sbjct: 410 EEALELVTLMEQGGVPPNIYTYTILTHGLCKLRRLDRAKEMFNEALARGLKPNRVTYNTL 469

Query: 390 VRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
           +  Y        A+   K M +N C+    T   L+ GL   + LP+A++    M  KG 
Sbjct: 470 LNGYCRGSRLIEAMDILKEMHQNDCTPDHVTYTTLIQGLVQGNQLPDALRMHDEMENKGY 529

Query: 450 QVTPFALSKLKQILIK 465
            V    L+ L + L +
Sbjct: 530 DVNFDTLNILARGLAR 545



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 64/238 (26%), Positives = 105/238 (44%), Gaps = 13/238 (5%)

Query: 150 RVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV-DGRIKPDNDTYA 208
           R+  A   F+     G K +    N+LL+  CR  + I+A   L+ +      PD+ TY 
Sbjct: 443 RLDRAKEMFNEALARGLKPNRVTYNTLLNGYCRGSRLIEAMDILKEMHQNDCTPDHVTYT 502

Query: 209 ILLEGWEKERDVANAKKTFGEMV---IEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSL 265
            L++G  +   + +A +   EM     +V +D  N+ A     +   K     Y      
Sbjct: 503 TLIQGLVQGNQLPDALRMHDEMENKGYDVNFDTLNILARGLARVGNHKDASIFY------ 556

Query: 266 KRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCY 325
           +RM +RG     + + LA     T   +  A+ +   M+ + G+ P+   YN MI  +C 
Sbjct: 557 RRMKDRGFAYSASDYYLAIHCLSTAGEMEEAQALLYEMINK-GYSPNLTTYNTMIKGFCR 615

Query: 326 SNETGAAMKLLDEMVYNGAFPDIQTYNILF-EFLVKGRKLWEASGLFNEMVKNENVLN 382
                 A  +L+ M+ NG  PD  +YNIL  EF  +GR   +A  L+   ++   VLN
Sbjct: 616 QGRLDDADAMLNFMIENGIGPDTGSYNILIKEFHNQGRT-QDADQLYATALERGVVLN 672



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 51/224 (22%), Positives = 87/224 (38%), Gaps = 38/224 (16%)

Query: 260 ETVNSLKRMMERGCNPGM--TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYN 317
           E++ +   M E G  PG+  T +       +  + L  AE ++  M+   G   +   Y 
Sbjct: 269 ESLEAFNLMKEMGYEPGLIDTAYNSVLVSLVKNKKLDMAENLFAQMINN-GVSCNNLTYT 327

Query: 318 MMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKN 377
            MI  +    +   AMKLLD+M+ N   PD+ TY I+   L K + + +A G+  +M +N
Sbjct: 328 SMIQCFFLKEKMEDAMKLLDDMIQNNYAPDVVTYTIVISALCKRKMIEQAYGVLQKMREN 387

Query: 378 ENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEA 437
                   C   +  Y                            N L+ GLC +    EA
Sbjct: 388 -------GCEPNIYTY----------------------------NALIQGLCAVRRPEEA 412

Query: 438 VKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKCKA 481
           ++    M + G+    +  + L   L K R+    +E+  +  A
Sbjct: 413 LELVTLMEQGGVPPNIYTYTILTHGLCKLRRLDRAKEMFNEALA 456


>gi|297807523|ref|XP_002871645.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317482|gb|EFH47904.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 524

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 98/423 (23%), Positives = 174/423 (41%), Gaps = 23/423 (5%)

Query: 39  IKTLCEIIANTPSPTVE--DVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLN 96
           + T+ +++ N  S   E  + L++  ++ S E V ++L    +    A  FF W+  Q  
Sbjct: 46  VGTIVKLLKNCGSDRKELRNKLEECDVKPSNELVVEILSQVRNDWETAFTFFVWAGKQQG 105

Query: 97  DKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKK--ENVLSLATFASVFSSYVVADRVKDA 154
              S   ++ ++ +LGK   FD  W  I  M+K   ++++  T   +   Y     V  A
Sbjct: 106 YVRSVREYHSMISILGKMRKFDTAWTLIDEMRKFSPSLVNSQTLLIMIRKYCAVHDVGKA 165

Query: 155 ITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGW 214
           I TF   +++  +  +    SLLSA+CR     DA   +         D  ++ I+L GW
Sbjct: 166 INTFHAYKRFKLEMGIDDFQSLLSALCRYKNVSDAEHLIFCNKDTYPFDAKSFNIVLNGW 225

Query: 215 EKERDVANAKKTFGEMVIEVG--WDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERG 272
               +V  + +    + +E+G      +V +Y S +    KG   + + +    RM +  
Sbjct: 226 ---CNVIGSPREAERVWMEMGNVGVKHDVVSYSSMISCYSKG-GSLNKVLKLFDRMKKES 281

Query: 273 CNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAA 332
             P    +            +  A  +   M    G  P+   YN +I   C + +T  A
Sbjct: 282 IEPDRKVYNAVIHALAKASFVSEARNLMKTMEEEKGMEPNVVTYNSLIKPLCKARKTEEA 341

Query: 333 MKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM-----VKNENVLNHENCR 387
            ++ DEM+  G FP I+TY+     L  G +++E      +M     V    +L  + CR
Sbjct: 342 KQVFDEMLEKGLFPTIRTYHAFMRILRTGEEVFELLAKMRKMGCQPTVDTYIMLIRKLCR 401

Query: 388 AAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEK 447
                + D D+    +  W  M E        +  +++ GL     + EA  Y K M EK
Sbjct: 402 -----WRDFDN---VLLLWNEMKEKGVGPDLSSYIVMIHGLFLNGKIEEAYGYYKEMKEK 453

Query: 448 GIQ 450
           G++
Sbjct: 454 GMR 456


>gi|224130702|ref|XP_002328355.1| predicted protein [Populus trichocarpa]
 gi|222838070|gb|EEE76435.1| predicted protein [Populus trichocarpa]
          Length = 608

 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 84/333 (25%), Positives = 137/333 (41%), Gaps = 5/333 (1%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           S+A F     S+    +    ++  + M+ +G  H+V++LN L++ +CR      A   L
Sbjct: 87  SVAEFGKFLGSFAKKKQYSTVVSLCNQMDLFGVTHNVYSLNVLINCLCRLNHVDFAVSIL 146

Query: 194 -RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
            ++    I P   T+  L+ G   E  +  A + F EMV   G +P NV +Y++ +  L 
Sbjct: 147 GKMFKLGIHPTASTFNALINGLCNEGKIKEAVELFNEMV-RRGHEP-NVISYNTIINGLC 204

Query: 253 KGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD 312
           K        V+  K+M + GC P +  +    +     + +  A      M+ R G  P+
Sbjct: 205 K-TGNTSMAVDVFKKMEQNGCKPDVVTYNTIIDSLCKDRLVNDAMEFLSEMLDR-GIPPN 262

Query: 313 THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFN 372
              YN M+  +C   +   A +L  EMV     PD  T  IL + L K   + EA  +F 
Sbjct: 263 VFTYNCMVHGFCILGQLNEATRLFKEMVGRDVMPDTVTLTILVDGLCKEGMVSEARLVFE 322

Query: 373 EMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMH 432
            M +     N     A +  Y        A K ++ MI   C+    + N+L+ G C   
Sbjct: 323 TMTEKGVEPNISTYNALMDGYCLQRLMNEAKKVFEIMIRQGCAPGVHSYNILINGFCKSR 382

Query: 433 MLPEAVKYAKGMAEKGIQVTPFALSKLKQILIK 465
            + EA      M  K +       S L Q L +
Sbjct: 383 RMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQ 415



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 92/388 (23%), Positives = 169/388 (43%), Gaps = 18/388 (4%)

Query: 99  HSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVA----DRVKDA 154
           H+ Y+ N++++ L   C  + +  A+  + K   L +   AS F++ +       ++K+A
Sbjct: 121 HNVYSLNVLINCL---CRLNHVDFAVSILGKMFKLGIHPTASTFNALINGLCNEGKIKEA 177

Query: 155 ITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEG 213
           +  F+ M + G + +V + N++++ +C+ G T  A   F ++     KPD  TY  +++ 
Sbjct: 178 VELFNEMVRRGHEPNVISYNTIINGLCKTGNTSMAVDVFKKMEQNGCKPDVVTYNTIIDS 237

Query: 214 WEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGC 273
             K+R V +A +   EM ++ G  P NV  Y+  ++        + E     K M+ R  
Sbjct: 238 LCKDRLVNDAMEFLSEM-LDRGIPP-NVFTYNC-MVHGFCILGQLNEATRLFKEMVGRDV 294

Query: 274 NPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAM 333
            P      +  +       +  A  ++  M  + G  P+   YN ++  YC       A 
Sbjct: 295 MPDTVTLTILVDGLCKEGMVSEARLVFETMTEK-GVEPNISTYNALMDGYCLQRLMNEAK 353

Query: 334 KLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK---NENVLNHENCRAAV 390
           K+ + M+  G  P + +YNIL     K R++ EA  L  EM     N + + +      +
Sbjct: 354 KVFEIMIRQGCAPGVHSYNILINGFCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGL 413

Query: 391 RVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQ 450
             +     P  A+  +K M          T ++L+ G C    L EA+K  K M EK ++
Sbjct: 414 CQF---GRPKEALNIFKEMCSYGLLPNLVTYSILLDGFCKHGHLDEALKLLKSMQEKKLE 470

Query: 451 VTPFALSKLKQILIKARKEAVYEELLKK 478
                 + L + +  A K  V +EL  K
Sbjct: 471 PNIVHHTILIEGMFIAGKLEVAKELFSK 498



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 63/277 (22%), Positives = 118/277 (42%), Gaps = 10/277 (3%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVM 161
              ++VD L K  +        ++M ++ V  +++T+ ++   Y +   + +A   F++M
Sbjct: 300 TLTILVDGLCKEGMVSEARLVFETMTEKGVEPNISTYNALMDGYCLQRLMNEAKKVFEIM 359

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERDV 220
            + GC   V + N L++  C+  +  +A   L  +    + PD  TY+ L++G  +    
Sbjct: 360 IRQGCAPGVHSYNILINGFCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQFGRP 419

Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIY--ETVNSLKRMMERGCNPGMT 278
             A   F EM    G  P+ V    +Y I L   C   +  E +  LK M E+   P + 
Sbjct: 420 KEALNIFKEMC-SYGLLPNLV----TYSILLDGFCKHGHLDEALKLLKSMQEKKLEPNIV 474

Query: 279 FFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDE 338
              +  E       L  A+ ++  +    G RP    Y +MI        +  A  L  +
Sbjct: 475 HHTILIEGMFIAGKLEVAKELFSKLFAD-GIRPTIRTYTVMIKGLLKEGLSDEAYDLFRK 533

Query: 339 MVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
           M  +G  P+  +YN++ +  ++ +    A  L +EMV
Sbjct: 534 MEDDGFLPNSCSYNVMIQGFLQNQDSSTAIRLIDEMV 570



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 74/340 (21%), Positives = 131/340 (38%), Gaps = 62/340 (18%)

Query: 99  HSP--YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAI 155
           H P   ++N +++ L K        D  K M++      + T+ ++  S      V DA+
Sbjct: 189 HEPNVISYNTIINGLCKTGNTSMAVDVFKKMEQNGCKPDVVTYNTIIDSLCKDRLVNDAM 248

Query: 156 TTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGW 214
                M   G   +VF  N ++   C  G+  +A +  + + GR + PD  T  IL++G 
Sbjct: 249 EFLSEMLDRGIPPNVFTYNCMVHGFCILGQLNEATRLFKEMVGRDVMPDTVTLTILVDGL 308

Query: 215 EKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDG--IYETVNSLKR----M 268
            KE  V+ A+  F E + E G +P N+  Y++ +       DG  +   +N  K+    M
Sbjct: 309 CKEGMVSEARLVF-ETMTEKGVEP-NISTYNALM-------DGYCLQRLMNEAKKVFEIM 359

Query: 269 MERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNE 328
           + +GC PG+  + +        + +  A+ +   M  +    PDT  Y+ ++   C    
Sbjct: 360 IRQGCAPGVHSYNILINGFCKSRRMDEAKSLLAEMYHK-ALNPDTVTYSTLMQGLCQFGR 418

Query: 329 TGAAMKLLDEMVYNGAFPDIQTY-----------------------------------NI 353
              A+ +  EM   G  P++ TY                                    I
Sbjct: 419 PKEALNIFKEMCSYGLLPNLVTYSILLDGFCKHGHLDEALKLLKSMQEKKLEPNIVHHTI 478

Query: 354 LFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVY 393
           L E +    KL  A  LF+++         +  R  +R Y
Sbjct: 479 LIEGMFIAGKLEVAKELFSKLFA-------DGIRPTIRTY 511


>gi|15240232|ref|NP_200945.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171474|sp|Q9FLJ6.1|PP439_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g61370, mitochondrial; Flags: Precursor
 gi|9757858|dbj|BAB08492.1| unnamed protein product [Arabidopsis thaliana]
 gi|17529064|gb|AAL38742.1| unknown protein [Arabidopsis thaliana]
 gi|23296891|gb|AAN13197.1| unknown protein [Arabidopsis thaliana]
 gi|332010076|gb|AED97459.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 487

 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 94/386 (24%), Positives = 163/386 (42%), Gaps = 65/386 (16%)

Query: 42  LCEIIANTPSPT-----VEDVLDKTLIRVSQETVEQVLKFSYSHPGPA--VKFFRWSAYQ 94
           L E+I    SP      +E+ L++  +  S   V QV++   +   P   ++FF WS   
Sbjct: 37  LHEVIRIVSSPVGGLDDLEENLNQVSVSPSSNLVTQVIESCKNETSPRRLLRFFSWSCKS 96

Query: 95  LNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKEN-VLSLATFASVFSSYVVADRVKD 153
           L        +N V+ +L +     AM   +  ++KEN  +   TF+ V  + V   + +D
Sbjct: 97  LGSSLHDKEFNYVLRVLAEKKDHTAMQILLSDLRKENRAMDKQTFSIVAETLVKVGKEED 156

Query: 154 AITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR----VVDGRIKPDNDTYAI 209
           AI  F +++++ C  D F + +++SA+C  G    A   +     V+ G    +   Y  
Sbjct: 157 AIGIFKILDKFSCPQDGFTVTAIISALCSRGHVKRALGVMHHHKDVISGN---ELSVYRS 213

Query: 210 LLEGWEKERDVANAKKTFGEMVIEVGWDPD--------------NV-------------- 241
           LL GW  +R+V  A++   +M    G  PD              NV              
Sbjct: 214 LLFGWSVQRNVKEARRVIQDMK-SAGITPDLFCFNSLLTCLCERNVNRNPSGLVPEALNI 272

Query: 242 ----------PAYDSY--LITLLKGCDGIYETVNSLKRMMERGCNPGM-TFFKLAFEECL 288
                     P   SY  L++ L     + E+   L++M   GC+P   +++ +     L
Sbjct: 273 MLEMRSYKIQPTSMSYNILLSCLGRTRRVRESCQILEQMKRSGCDPDTGSYYFVVRVLYL 332

Query: 289 TGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDI 348
           TG+  +G + +   M+ R GFRP+   Y  +I + C       A++L ++M  +      
Sbjct: 333 TGRFGKGNQIV-DEMIER-GFRPERKFYYDLIGVLCGVERVNFALQLFEKMKRSSVGGYG 390

Query: 349 QTYNILFEFLV------KGRKLWEAS 368
           Q Y++L   L       KGR+LWE +
Sbjct: 391 QVYDLLIPKLCKGGNFEKGRELWEEA 416


>gi|255568998|ref|XP_002525469.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223535282|gb|EEF36959.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 581

 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 104/408 (25%), Positives = 165/408 (40%), Gaps = 36/408 (8%)

Query: 63  IRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWD 122
           ++VS+E V +VL    +    A  FF W+  QL   HS   ++ ++ +LGK   FD  W 
Sbjct: 123 VKVSRELVLEVLSRIRNDWEAAFTFFLWAGRQLGYSHSVREYHAMISILGKMRKFDTAWA 182

Query: 123 AIKSMKKE----NVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLS 178
            I  M+      ++++  T   +   Y     V  AI TF   +++     +    SLLS
Sbjct: 183 LIDEMRGVKTGISLVTPQTLLIMIRKYCAVHDVGRAINTFYAHKRFKFDLGIDEFQSLLS 242

Query: 179 AICRDGKTIDAWQFLRVVDGRIKPDN-DTYAILLEGW-EKERDVANAKKTFGEMV-IEVG 235
           A+CR     DA + L   +  + P N  ++ I+L GW         A + + EM    + 
Sbjct: 243 ALCRYKNVQDA-EHLMFCNKDVFPFNTKSFNIVLNGWCNVIGSPREADRIWREMCKRRIH 301

Query: 236 WDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRG 295
           +D   V +Y S +I+       +Y+      +M E G  P    +         G+++  
Sbjct: 302 YD---VVSYAS-IISCYSKAGNLYKVFKLYNQMKEVGIEPDRKIYNSVIFALAKGRHVSE 357

Query: 296 AEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILF 355
           A  +   M  + G  P+T  YN +I   C + +   A  L DEM+ +G  P I+TY+  F
Sbjct: 358 AINLMKTMEEK-GIAPNTVTYNSLIKPLCRARKIDEARGLFDEMLQHGHSPTIRTYHAFF 416

Query: 356 EFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYM----------DSDDPYVAIKF 405
             L  G    E   L   M K         C   +  Y+            DD +   K 
Sbjct: 417 RSLRTGE---EVFALLENMRK-------LGCHPTIDTYIMLIRKFCRWRQFDDVF---KL 463

Query: 406 WKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTP 453
           W  + EN       +  +L+ GL     L EA K+   M EK +   P
Sbjct: 464 WNQISENGLGPDRSSYIVLIHGLFLNGKLEEAYKFYADMKEKQLLPDP 511


>gi|302794530|ref|XP_002979029.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
 gi|300153347|gb|EFJ19986.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
          Length = 500

 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 84/327 (25%), Positives = 146/327 (44%), Gaps = 12/327 (3%)

Query: 127 MKKENVLS-LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGK 185
           M+ +N+ + + T++S+  S V   + +++    + M   GC  DVFA N ++    R   
Sbjct: 1   MRDKNIAANVFTYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNN 60

Query: 186 TIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAY 244
              A + +  +V+   KPDN +Y IL+ G  K   +  + K   EMV+  G  P ++ AY
Sbjct: 61  MEKAREVYQHMVESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMVMR-GQTP-SMQAY 118

Query: 245 DSYLITLLKGCDGIYETVNSLKRMMERGCNPG-MTFFKLAFEECLTGQNLRGAEFIWGAM 303
            S L+  L     +    +    M+  G +P  + F++L    C  G+    +E      
Sbjct: 119 SS-LVRALAKARRVDHASSLFDEMIRGGHHPDRLMFYELILGLCQAGKVKDASERFK--Q 175

Query: 304 VGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRK 363
           + + G +P+  +YN+++   C S +   A  L  EM  +   PD+ TYN L + + K R+
Sbjct: 176 MPKHGCQPNVPVYNVLLHGLCSSGQLEQANTLFAEMKSHSCSPDVVTYNTLLDAVCKARR 235

Query: 364 LWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNL 423
           + E   LF  M     V N       +     + +   A++ +  M+E  C     T   
Sbjct: 236 VEEGCKLFEAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTT 295

Query: 424 LVAGLCDMHMLPEAVKYAKGMAEKGIQ 450
           L++GLC      E V  A+ + EK  Q
Sbjct: 296 LISGLCR----AEKVIQARELFEKMTQ 318



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 87/339 (25%), Positives = 137/339 (40%), Gaps = 10/339 (2%)

Query: 148 ADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDA-WQFLRVVDGRIKPDNDT 206
           A +VKDA   F  M ++GC+ +V   N LL  +C  G+   A   F  +      PD  T
Sbjct: 163 AGKVKDASERFKQMPKHGCQPNVPVYNVLLHGLCSSGQLEQANTLFAEMKSHSCSPDVVT 222

Query: 207 YAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLK 266
           Y  LL+   K R V    K F E +   G+ P NV  + + +  L +  + + + +    
Sbjct: 223 YNTLLDAVCKARRVEEGCKLF-EAMRAAGYVP-NVITFSTLIHGLCRTGE-LEKALEVFG 279

Query: 267 RMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYS 326
            M+E GC P    +          + +  A  ++  M  +    PD   YN +I+ YC  
Sbjct: 280 SMLEAGCKPNKYTYTTLISGLCRAEKVIQARELFEKMT-QACIPPDAVAYNSLIAGYCKR 338

Query: 327 NETGAAMKLLDEMVYN-GAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHEN 385
                A KL  EM    G  P I T+N L +   K  KL  A+ L  EM      L  ++
Sbjct: 339 GSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEM--GTKGLAADS 396

Query: 386 CRAAVRVYMDSDDPYV--AIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKG 443
           C   + +   S    +  A++ +K M E        +    V GLC    + +A    + 
Sbjct: 397 CTYRILIAGLSRATKLDEALEVYKQMREKKFLLDPVSCVSFVGGLCKTGNIDQAYAVFEA 456

Query: 444 MAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKCKAH 482
             + G    P     L + LIK  +    ++L++  KA 
Sbjct: 457 TRKSGAVPNPETFRILSESLIKLGRVEDAQKLMEPAKAR 495



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 87/333 (26%), Positives = 138/333 (41%), Gaps = 24/333 (7%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-F 192
           S+  ++S+  +   A RV  A + FD M + G   D      L+  +C+ GK  DA + F
Sbjct: 114 SMQAYSSLVRALAKARRVDHASSLFDEMIRGGHHPDRLMFYELILGLCQAGKVKDASERF 173

Query: 193 LRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
            ++     +P+   Y +LL G      +  A   F EM       PD V  Y++ L  + 
Sbjct: 174 KQMPKHGCQPNVPVYNVLLHGLCSSGQLEQANTLFAEMKSH-SCSPD-VVTYNTLLDAVC 231

Query: 253 KGCDGIYETVNSLKRMMERGCNPG-MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRP 311
           K    + E     + M   G  P  +TF  L    C TG+ L  A  ++G+M+   G +P
Sbjct: 232 KA-RRVEEGCKLFEAMRAAGYVPNVITFSTLIHGLCRTGE-LEKALEVFGSML-EAGCKP 288

Query: 312 DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLF 371
           + + Y  +IS  C + +   A +L ++M      PD   YN L     K   + EA  L+
Sbjct: 289 NKYTYTTLISGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLY 348

Query: 372 NEM---------VKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGN 422
            EM         +   N L    C+      +   +  VA    K +  + C     T  
Sbjct: 349 REMSGGAGLQPTIVTFNTLIDGFCKLG---KLGRANELVAEMGTKGLAADSC-----TYR 400

Query: 423 LLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFA 455
           +L+AGL     L EA++  K M EK   + P +
Sbjct: 401 ILIAGLSRATKLDEALEVYKQMREKKFLLDPVS 433


>gi|302815701|ref|XP_002989531.1| hypothetical protein SELMODRAFT_130008 [Selaginella moellendorffii]
 gi|300142709|gb|EFJ09407.1| hypothetical protein SELMODRAFT_130008 [Selaginella moellendorffii]
          Length = 436

 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 90/364 (24%), Positives = 155/364 (42%), Gaps = 13/364 (3%)

Query: 98  KHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITT 157
           K    A++ +++ L K    +   + I+ M +       T+  +        R+ DA+ T
Sbjct: 77  KRKAIAYSTIINWLCKLNRVEEARELIEKMARYAPPDALTYGPIVERLCKTKRIDDALAT 136

Query: 158 FDVMEQYGCKHDVFALNSLLSAICRDGKTIDA-WQFLRVVDGRIKPDNDTYAILLEGWEK 216
            + M   G K D F  N +LS +C++ K  +A   F ++V  RI P+  TY  L+ G  K
Sbjct: 137 VEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRINPNVVTYNTLINGLCK 196

Query: 217 ERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPG 276
              +  A + F EM  + G+ P  V +Y++ +    K  D +    +   +M+   C P 
Sbjct: 197 AWRIETAYELFKEMAGK-GYVPTEV-SYNTLIDGFCKKKD-LVAAKDVFDKMVRSNCVPN 253

Query: 277 MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLL 336
           +  +    +       ++ A  +   MV + G  P+   Y+ +I  +C       A KLL
Sbjct: 254 VVTYTTLIDGLSKSGKVQAAAEVLDGMVKK-GVTPNVATYSCLIDGFCKVRRVDEAHKLL 312

Query: 337 DEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNE---NVLNHENCRAAVRVY 393
           ++MV  G  P + TYNIL   L +  KL +A  LF  M +      V+ +     A+  +
Sbjct: 313 EQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQRRCHPTVVTYNTLLRALCHH 372

Query: 394 MDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTP 453
              D  +   + +  MI   C   + T + L  GL     + EA +  + M  K  +  P
Sbjct: 373 KQLDGAH---RLYAEMIAKGCPPDAITYDTLAWGLTRAGKVHEAQELMEKM--KLTKRNP 427

Query: 454 FALS 457
           F  S
Sbjct: 428 FGRS 431



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 77/380 (20%), Positives = 154/380 (40%), Gaps = 9/380 (2%)

Query: 104 WNLVVDLLGKNCLFDAMWDAIKSMKKEN-VLSLATFASVFSSYVVADRVKDAITTFDVME 162
           +N V D   K    + + +  + M +    L  + +  + S         +A      M 
Sbjct: 13  FNTVADGFAKAGRLEQVKEVYQGMVEAGYTLRASGYGILISCLCKVGNFDEAYKLLHTMR 72

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVAN 222
               K    A +++++ +C+  +  +A + +  +     PD  TY  ++E   K + + +
Sbjct: 73  LKRFKRKAIAYSTIINWLCKLNRVEEARELIEKMARYAPPDALTYGPIVERLCKTKRIDD 132

Query: 223 AKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKL 282
           A  T  EM    G  PD      +++++ L   + + E     ++M+++  NP +  +  
Sbjct: 133 ALATVEEMATR-GIKPDAF--IYNFVLSGLCQEEKVEEARLLFEKMVKQRINPNVVTYNT 189

Query: 283 AFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYN 342
                     +  A  ++  M G+ G+ P    YN +I  +C   +  AA  + D+MV +
Sbjct: 190 LINGLCKAWRIETAYELFKEMAGK-GYVPTEVSYNTLIDGFCKKKDLVAAKDVFDKMVRS 248

Query: 343 GAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVA 402
              P++ TY  L + L K  K+  A+ + + MVK     N       +  +        A
Sbjct: 249 NCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDEA 308

Query: 403 IKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQI 462
            K  + M+    +    T N+L+  LC    L +A K  +GMA++    T    + L + 
Sbjct: 309 HKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQRRCHPTVVTYNTLLRA 368

Query: 463 LIKARK----EAVYEELLKK 478
           L   ++      +Y E++ K
Sbjct: 369 LCHHKQLDGAHRLYAEMIAK 388


>gi|218202055|gb|EEC84482.1| hypothetical protein OsI_31142 [Oryza sativa Indica Group]
          Length = 586

 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 97/416 (23%), Positives = 169/416 (40%), Gaps = 9/416 (2%)

Query: 38  TIKTLCEIIANTPSPT--VEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQL 95
            + +LC ++++   P   +   L      ++      VL+     P P+++FF ++    
Sbjct: 64  VVGSLCRVLSDFRGPRHDLPAALRGFAPWLTPGDAAAVLRRCRHLPLPSLRFFLFAGELP 123

Query: 96  NDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAI 155
              H P +  ++ + L    LF  +   +  +   + LS   F  +F +Y  A   +DAI
Sbjct: 124 GFSHHPDSLLVLANSLAGARLFPLLRSLLSDLPP-SALSRGLFPLLFRAYSRARLPEDAI 182

Query: 156 TTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWE 215
             F  M  +G    +   +SLL A+ R+G      +F R    +       Y IL+ GW 
Sbjct: 183 RAFSSMAGFGFPPTIADFHSLLFALSRNGLVEYGERFFRESSAQFDVSAKAYTILISGWA 242

Query: 216 KERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMME-RGCN 274
             +   NA+  F EMV E G + D V  Y++ +  L +G D I      L  M +  G  
Sbjct: 243 VVKKPENARSLFDEMV-ERGVELD-VHVYNALIDALCRGGD-ITSAQEQLSNMQKSHGLV 299

Query: 275 PGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMK 334
           P    +          +++R A  +   M       P+   YN +I L C   E   A  
Sbjct: 300 PNAATYGPFLHAACASKDVRAALRVLDRMHTH-ALTPNVFTYNAVIRLLCDLGEINEAYN 358

Query: 335 LLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYM 394
           +LDE+   G  PD+ +YN L     K +++ +A  L + M K     +  +    +++ +
Sbjct: 359 ILDEITTQGEKPDVWSYNTLLNAHCKLKEVNKALRLISRMDKELCPPDRHSYNMLLKMLI 418

Query: 395 DSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPE-AVKYAKGMAEKGI 449
                  AI+ W  M +      + T  +++ GL       E A  Y   M ++GI
Sbjct: 419 GVGRFDTAIEVWDGMEKRGFHPGAATYAVMIHGLASKKGRAEDACSYFVRMVDEGI 474


>gi|326510071|dbj|BAJ87252.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 825

 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 93/355 (26%), Positives = 150/355 (42%), Gaps = 20/355 (5%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           T+  +        RV +A      M   G   +V   N+L+  +C++G+  D  + L  +
Sbjct: 198 TYTVLLDGLCKVRRVGEAEALLGEMVNKGVVPNVVTYNALIGGLCQEGRFDDVTKLLEKM 257

Query: 197 D-GRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIE-VGWDPDNVPAYDSYLITLLKG 254
           +  R  PD  TY  ++ G  K   V +  K   E + + V  +   V  Y++ +    KG
Sbjct: 258 EIQRHSPDCWTYTQVVHGLCKHGKVGHGAKVLHEAIGKGVALE---VLTYNALINGYCKG 314

Query: 255 CDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTH 314
            D +   ++ L+ M     NPG+  F         G  +  A      M G  G  P+T 
Sbjct: 315 GD-MKAALDVLQLMKRNRVNPGVQTFNEVIHGFCCGGKVHKAMAFLTQMAG-AGLSPNTV 372

Query: 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
            +N +IS  C   E   A++LLD M   G  PD QTY I  + L    +L EA  LF+ +
Sbjct: 373 TFNSLISGQCSVGERKIALRLLDLMEEYGVLPDRQTYAIFIDALCDEGQLEEAHSLFSCL 432

Query: 375 ----VKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCD 430
               +K  NV+      + V  Y    D   A    + M   +C     T N L+ GLC 
Sbjct: 433 PMKGIKAHNVIY----TSLVHGYCQVGDIDSAFGLMEKMASENCMPDVHTYNTLIDGLCK 488

Query: 431 MHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEA----VYEELLKK-CK 480
           +  L  A+     M ++GI+ T    + L + ++  +K A    +YE+++   CK
Sbjct: 489 VKRLDRAIDLLDKMKKQGIEPTTCTFNILIKQMLWDKKHADAAKMYEQMISSGCK 543



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 75/291 (25%), Positives = 129/291 (44%), Gaps = 9/291 (3%)

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDVA 221
           ++G  +D ++   L+  +C  G+  DA + F ++  G  +P   TY +LL+G  K R V 
Sbjct: 154 RWGACYDRYSYTILIKGLCAAGRIDDACRVFAKMSRGWCRPGVHTYTVLLDGLCKVRRVG 213

Query: 222 NAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMME--RGCNPGMTF 279
            A+   GEMV + G  P NV  Y++ +  L +  +G ++ V  L   ME  R      T+
Sbjct: 214 EAEALLGEMVNK-GVVP-NVVTYNALIGGLCQ--EGRFDDVTKLLEKMEIQRHSPDCWTY 269

Query: 280 FKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEM 339
            ++    C  G+   GA+ +  A +G+ G   +   YN +I+ YC   +  AA+ +L  M
Sbjct: 270 TQVVHGLCKHGKVGHGAKVLHEA-IGK-GVALEVLTYNALINGYCKGGDMKAALDVLQLM 327

Query: 340 VYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDP 399
             N   P +QT+N +      G K+ +A     +M       N     + +       + 
Sbjct: 328 KRNRVNPGVQTFNEVIHGFCCGGKVHKAMAFLTQMAGAGLSPNTVTFNSLISGQCSVGER 387

Query: 400 YVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQ 450
            +A++    M E       +T  + +  LCD   L EA      +  KGI+
Sbjct: 388 KIALRLLDLMEEYGVLPDRQTYAIFIDALCDEGQLEEAHSLFSCLPMKGIK 438



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/255 (21%), Positives = 106/255 (41%), Gaps = 12/255 (4%)

Query: 104 WNLVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASVFSSYVVADRVKDAITTFDVME 162
           +N +++   K     A  D ++ MK+  V   + TF  V   +    +V  A+     M 
Sbjct: 304 YNALINGYCKGGDMKAALDVLQLMKRNRVNPGVQTFNEVIHGFCCGGKVHKAMAFLTQMA 363

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDG-RIKPDNDTYAILLEGWEKERDVA 221
             G   +    NSL+S  C  G+   A + L +++   + PD  TYAI ++    E  + 
Sbjct: 364 GAGLSPNTVTFNSLISGQCSVGERKIALRLLDLMEEYGVLPDRQTYAIFIDALCDEGQLE 423

Query: 222 NAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG-CD--GIYETVNSLKRMMERGCNPGMT 278
            A   F  + ++       + A++    +L+ G C    I      +++M    C P + 
Sbjct: 424 EAHSLFSCLPMK------GIKAHNVIYTSLVHGYCQVGDIDSAFGLMEKMASENCMPDVH 477

Query: 279 FFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDE 338
            +    +     + L  A  +   M  + G  P T  +N++I    +  +   A K+ ++
Sbjct: 478 TYNTLIDGLCKVKRLDRAIDLLDKM-KKQGIEPTTCTFNILIKQMLWDKKHADAAKMYEQ 536

Query: 339 MVYNGAFPDIQTYNI 353
           M+ +G  PD QTY +
Sbjct: 537 MISSGCKPDKQTYTL 551



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 101/227 (44%), Gaps = 9/227 (3%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           TF S+ S        K A+   D+ME+YG   D       + A+C +G+  +A      +
Sbjct: 373 TFNSLISGQCSVGERKIALRLLDLMEEYGVLPDRQTYAIFIDALCDEGQLEEAHSLFSCL 432

Query: 197 DGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
             + IK  N  Y  L+ G+ +  D+ +A     +M  E    PD V  Y++ +  L K  
Sbjct: 433 PMKGIKAHNVIYTSLVHGYCQVGDIDSAFGLMEKMASE-NCMPD-VHTYNTLIDGLCK-V 489

Query: 256 DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHM 315
             +   ++ L +M ++G  P    F +  ++ L  +    A  ++  M+   G +PD   
Sbjct: 490 KRLDRAIDLLDKMKKQGIEPTTCTFNILIKQMLWDKKHADAAKMYEQMISS-GCKPDKQT 548

Query: 316 YNMMISLYCY---SNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLV 359
           Y + IS   +   + E    M ++ EM   G FPD++TYN + +  V
Sbjct: 549 YTLKISTDWFEGATKEENIDMAVV-EMHEAGVFPDVETYNAIIKAYV 594



 Score = 47.0 bits (110), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 54/228 (23%), Positives = 89/228 (39%), Gaps = 39/228 (17%)

Query: 148 ADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQF-LRVVDGRIKPDNDT 206
           A R+   + +F  M + G   +    N+L++A C+     DA    +R+ +  + PD  T
Sbjct: 68  APRLAHLLASFGAMLKSGAPPNRCTYNTLINAHCKLALLADARAALVRMREAGLAPDTFT 127

Query: 207 YAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLK 266
           Y  L+ G  +   +A A   F +M    G        YD Y  T+L       + + +  
Sbjct: 128 YNCLMLGLCRAGLLAAACGLFVQMPRRWG------ACYDRYSYTIL------IKGLCAAG 175

Query: 267 RMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYS 326
           R+ +  C     F K++   C                      RP  H Y +++   C  
Sbjct: 176 RI-DDACR---VFAKMSRGWC----------------------RPGVHTYTVLLDGLCKV 209

Query: 327 NETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
              G A  LL EMV  G  P++ TYN L   L +  +  + + L  +M
Sbjct: 210 RRVGEAEALLGEMVNKGVVPNVVTYNALIGGLCQEGRFDDVTKLLEKM 257



 Score = 44.7 bits (104), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 50/117 (42%), Gaps = 2/117 (1%)

Query: 267 RMMERGCNP-GMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCY 325
           RM E G  P   T+  L    C  G  L  A  ++  M  R G   D + Y ++I   C 
Sbjct: 115 RMREAGLAPDTFTYNCLMLGLCRAGL-LAAACGLFVQMPRRWGACYDRYSYTILIKGLCA 173

Query: 326 SNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLN 382
           +     A ++  +M      P + TY +L + L K R++ EA  L  EMV    V N
Sbjct: 174 AGRIDDACRVFAKMSRGWCRPGVHTYTVLLDGLCKVRRVGEAEALLGEMVNKGVVPN 230



 Score = 42.0 bits (97), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 66/159 (41%), Gaps = 18/159 (11%)

Query: 300 WGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLV 359
           +GAM+ + G  P+   YN +I+ +C       A   L  M   G  PD  TYN L   L 
Sbjct: 78  FGAML-KSGAPPNRCTYNTLINAHCKLALLADARAALVRMREAGLAPDTFTYNCLMLGLC 136

Query: 360 KGRKLWEASGLFNEMVK---------NENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMI 410
           +   L  A GLF +M +         +  +L    C AA R+    DD   A + +  M 
Sbjct: 137 RAGLLAAACGLFVQMPRRWGACYDRYSYTILIKGLC-AAGRI----DD---ACRVFAKMS 188

Query: 411 ENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
              C     T  +L+ GLC +  + EA      M  KG+
Sbjct: 189 RGWCRPGVHTYTVLLDGLCKVRRVGEAEALLGEMVNKGV 227


>gi|224078588|ref|XP_002305565.1| predicted protein [Populus trichocarpa]
 gi|222848529|gb|EEE86076.1| predicted protein [Populus trichocarpa]
          Length = 757

 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 93/354 (26%), Positives = 158/354 (44%), Gaps = 17/354 (4%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RV 195
           TF  + +       VK A+   D+M + G   D++  NSL+S +C+ G+  +A + L ++
Sbjct: 303 TFNMLVNGLSKTGHVKHALEVMDMMLREGFDPDIYTYNSLISGLCKLGEVDEAVKVLNQM 362

Query: 196 VDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG- 254
           ++    P+  TY  ++    KE  V  A K    ++   G  PD V  Y+S    L++G 
Sbjct: 363 IERDCSPNTVTYNTIISTLCKENQVEEATK-LALVLTGKGILPD-VCTYNS----LIQGL 416

Query: 255 CDGIYETV--NSLKRMMERGCNPG-MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRP 311
           C     TV     K M  +GC+P   T+  L    C  G+       +    V   G   
Sbjct: 417 CLSRNHTVAMELYKEMKTKGCHPDEFTYNMLIDSLCFRGKLQEALNLLKEMEVS--GCAR 474

Query: 312 DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLF 371
           +   YN +I  +C +     A ++ D+M   G   +  TYN L + L K  ++ EAS L 
Sbjct: 475 NVITYNTLIDGFCKNKRIAEAEEIFDQMELQGVSRNSVTYNTLIDGLCKSERVEEASQLM 534

Query: 372 NEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDM 431
           ++M+      +     + +  +  + D   A    + M  + C     T   L+AGLC  
Sbjct: 535 DQMIMEGLRPDKFTYNSLLTYFCKAGDIKKAADIVQTMASDGCEPDIVTYGTLIAGLCKA 594

Query: 432 HMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKAR--KEAV--YEELLKKCKA 481
             +  A K  + +  KGI +TP A + + Q L + +  KEAV  + E+++K +A
Sbjct: 595 GRVEAATKLLRTIQMKGINLTPHAYNPVIQALFRRKRSKEAVRLFREMIEKAEA 648



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 103/407 (25%), Positives = 169/407 (41%), Gaps = 55/407 (13%)

Query: 85  VKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL----SLATFAS 140
           +  F W++ Q N K S   +  V+  LGK   FDAM D +K MK    +    SL  F  
Sbjct: 73  IHLFYWASKQPNFKPSSSIFKEVLHKLGKAGEFDAMKDILKEMKISLSVIDNDSLLVFIE 132

Query: 141 VFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR--VVDG 198
            ++S+ + + +   +   +V  ++G   +    N LL+ +  DG  +   +     +V  
Sbjct: 133 SYASFGLYNEILQFVDAMEV--EFGVVANTHFYNFLLNVLV-DGNKLKLVEIAHSNMVSR 189

Query: 199 RIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC--D 256
            I+PD  T+ IL++   +   +  A     EM  + G  PD     +    T+++G   +
Sbjct: 190 GIRPDVSTFNILIKALCRAHQIRPAILLMEEME-DFGLLPD-----EKTFTTIMQGFIEE 243

Query: 257 GIYETVNSLK-RMMERGCNPGMTFFKLAFEE-CLTGQNLRGAEFIWGAMVGRIGFRPDTH 314
           G  +    +K +M+E GC        +     C  G+      FI   M  R GF PD +
Sbjct: 244 GNLDGAMRVKEQMVEAGCVVTNVTVNVLVNGFCKEGRIEEALRFIE-EMSLREGFFPDKY 302

Query: 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
            +NM+++    +     A++++D M+  G  PDI TYN L   L K  ++ EA  + N+ 
Sbjct: 303 TFNMLVNGLSKTGHVKHALEVMDMMLREGFDPDIYTYNSLISGLCKLGEVDEAVKVLNQ- 361

Query: 375 VKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHML 434
                                             MIE  CS  + T N +++ LC  + +
Sbjct: 362 ----------------------------------MIERDCSPNTVTYNTIISTLCKENQV 387

Query: 435 PEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKCKA 481
            EA K A  +  KGI       + L Q L  +R   V  EL K+ K 
Sbjct: 388 EEATKLALVLTGKGILPDVCTYNSLIQGLCLSRNHTVAMELYKEMKT 434



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 80/350 (22%), Positives = 145/350 (41%), Gaps = 9/350 (2%)

Query: 103 AWNLVVDLLGK-NCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVM 161
            +N ++  L K N + +A   A+    K  +  + T+ S+     ++     A+  +  M
Sbjct: 373 TYNTIISTLCKENQVEEATKLALVLTGKGILPDVCTYNSLIQGLCLSRNHTVAMELYKEM 432

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDN-DTYAILLEGWEKERDV 220
           +  GC  D F  N L+ ++C  GK  +A   L+ ++      N  TY  L++G+ K + +
Sbjct: 433 KTKGCHPDEFTYNMLIDSLCFRGKLQEALNLLKEMEVSGCARNVITYNTLIDGFCKNKRI 492

Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPG-MTF 279
           A A++ F +M  E+     N   Y++ +  L K  + + E    + +M+  G  P   T+
Sbjct: 493 AEAEEIFDQM--ELQGVSRNSVTYNTLIDGLCKS-ERVEEASQLMDQMIMEGLRPDKFTY 549

Query: 280 FKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEM 339
             L    C  G   + A+ +    +   G  PD   Y  +I+  C +    AA KLL  +
Sbjct: 550 NSLLTYFCKAGDIKKAADIVQ--TMASDGCEPDIVTYGTLIAGLCKAGRVEAATKLLRTI 607

Query: 340 VYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDP 399
              G       YN + + L + ++  EA  LF EM++     +    +   R       P
Sbjct: 608 QMKGINLTPHAYNPVIQALFRRKRSKEAVRLFREMIEKAEAPDAVTYKIVFRGLCQGGGP 667

Query: 400 Y-VAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448
              A+ F   M+E        +  +L  GL  + M+   +K    + EK 
Sbjct: 668 IGEAVDFVMEMLERGYVPEFSSFYMLAEGLFSLAMVGTLIKLIDMVMEKA 717


>gi|334187687|ref|NP_197005.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635761|sp|Q9LFQ4.2|PP383_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g15010, mitochondrial; Flags: Precursor
 gi|332004721|gb|AED92104.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 572

 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 93/402 (23%), Positives = 166/402 (41%), Gaps = 21/402 (5%)

Query: 58  LDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLF 117
           L++  ++ S E V ++L    +    A  FF W+  Q     S   ++ ++ +LGK   F
Sbjct: 118 LEECDVKPSNELVVEILSRVRNDWETAFTFFVWAGKQQGYVRSVREYHSMISILGKMRKF 177

Query: 118 DAMWDAIKSMKK--ENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNS 175
           D  W  I  M+K   ++++  T   +   Y     V  AI TF   +++  +  +    S
Sbjct: 178 DTAWTLIDEMRKFSPSLVNSQTLLIMIRKYCAVHDVGKAINTFHAYKRFKLEMGIDDFQS 237

Query: 176 LLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVG 235
           LLSA+CR     DA   +     +   D  ++ I+L GW    +V  + +    + +E+G
Sbjct: 238 LLSALCRYKNVSDAGHLIFCNKDKYPFDAKSFNIVLNGW---CNVIGSPREAERVWMEMG 294

Query: 236 --WDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNL 293
                 +V +Y S +    KG   + + +    RM +    P    +            +
Sbjct: 295 NVGVKHDVVSYSSMISCYSKG-GSLNKVLKLFDRMKKECIEPDRKVYNAVVHALAKASFV 353

Query: 294 RGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNI 353
             A  +   M    G  P+   YN +I   C + +T  A ++ DEM+  G FP I+TY+ 
Sbjct: 354 SEARNLMKTMEEEKGIEPNVVTYNSLIKPLCKARKTEEAKQVFDEMLEKGLFPTIRTYHA 413

Query: 354 LFEFLVKGRKLWEASGLFNEM-----VKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKY 408
               L  G +++E      +M     V+   +L  + CR     + D D+    +  W  
Sbjct: 414 FMRILRTGEEVFELLAKMRKMGCEPTVETYIMLIRKLCR-----WRDFDN---VLLLWDE 465

Query: 409 MIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQ 450
           M E        +  +++ GL     + EA  Y K M +KG++
Sbjct: 466 MKEKTVGPDLSSYIVMIHGLFLNGKIEEAYGYYKEMKDKGMR 507


>gi|449527556|ref|XP_004170776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Cucumis sativus]
          Length = 665

 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 87/323 (26%), Positives = 132/323 (40%), Gaps = 62/323 (19%)

Query: 158 FDVMEQYGCKHDV---FALNSLLSAICRDGKTIDAWQFLRVV-DGRIKPDNDTYAILLEG 213
           F  +E   C+ D+    A  SL+  +C+ GKT  A + + ++ D    PD  TY +L+ G
Sbjct: 130 FKFLEDMVCRGDIPDIIACTSLIRGLCKTGKTWKATRVMEILEDSGAVPDVITYNVLISG 189

Query: 214 WEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDG--IYETVNSLKRMMER 271
           + K  ++ +A +    M +     PD V  Y++ L TL   CD   + E +  L R M+R
Sbjct: 190 YCKTGEIGSALQLLDRMSV----SPD-VVTYNTILRTL---CDSGKLKEAMEVLDRQMQR 241

Query: 272 GCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGA 331
            C                                     PD   Y ++I   C  +  G 
Sbjct: 242 EC------------------------------------YPDVITYTILIEATCKESGVGQ 265

Query: 332 AMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK---NENVLNHE---N 385
           AMKLLDEM   G  PD+ TYN+L   + K  +L EA    N M       NV+ H     
Sbjct: 266 AMKLLDEMRDKGCKPDVVTYNVLINGICKEGRLDEAIRFLNHMPSYGCQPNVITHNIILR 325

Query: 386 CRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMA 445
              +   +MD++      KF   MI   CS    T N+L+  LC   ++  A+   + M 
Sbjct: 326 SMCSTGRWMDAE------KFLAEMIRKGCSPSVVTFNILINFLCRKGLIGRAIDVLEKMP 379

Query: 446 EKGIQVTPFALSKLKQILIKARK 468
           + G      + + L   L K +K
Sbjct: 380 QHGCTPNSLSYNPLLHALCKDKK 402



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 98/401 (24%), Positives = 150/401 (37%), Gaps = 61/401 (15%)

Query: 115 CLFDAMWDAIKSMK----KENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDV 170
           C     W A + M+       V  + T+  + S Y     +  A+   D M       DV
Sbjct: 156 CKTGKTWKATRVMEILEDSGAVPDVITYNVLISGYCKTGEIGSALQLLDRMS---VSPDV 212

Query: 171 FALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGE 229
              N++L  +C  GK  +A + L R +     PD  TY IL+E   KE  V  A K   E
Sbjct: 213 VTYNTILRTLCDSGKLKEAMEVLDRQMQRECYPDVITYTILIEATCKESGVGQAMKLLDE 272

Query: 230 MVIEVGWDPDNVPAYDSYLITLLKGCDG-IYETVNSLKRMMERGCNPGMTFFKLAFEE-C 287
           M  + G  PD V  Y+  +  + K  +G + E +  L  M   GC P +    +     C
Sbjct: 273 MR-DKGCKPD-VVTYNVLINGICK--EGRLDEAIRFLNHMPSYGCQPNVITHNIILRSMC 328

Query: 288 LTGQNLRGAEFIW-----------------------GAMVGRI----------GFRPDTH 314
            TG+ +   +F+                          ++GR           G  P++ 
Sbjct: 329 STGRWMDAEKFLAEMIRKGCSPSVVTFNILINFLCRKGLIGRAIDVLEKMPQHGCTPNSL 388

Query: 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
            YN ++   C   +   A++ LD MV  G +PDI TYN L   L K  K+  A  + N+ 
Sbjct: 389 SYNPLLHALCKDKKMERAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQ- 447

Query: 375 VKNENVLNHENCRAAVRVYMDSDDPYV-------AIKFWKYMIENHCSDLSETGNLLVAG 427
                 L  + C   +  Y    D          AIK    M          T + LV G
Sbjct: 448 ------LGSKGCSPVLITYNTVIDGLSKVGKTDDAIKLLDEMKGKGLKPDIITYSTLVGG 501

Query: 428 LCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARK 468
           L     + EA+ +   + E G++      + +   L KAR+
Sbjct: 502 LSREGKVDEAIAFFHDLEEMGVKPNAITYNSIMLGLCKARQ 542



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 60/130 (46%), Gaps = 2/130 (1%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVM 161
            +N V+D L K    D     +  MK + +   + T++++        +V +AI  F  +
Sbjct: 459 TYNTVIDGLSKVGKTDDAIKLLDEMKGKGLKPDIITYSTLVGGLSREGKVDEAIAFFHDL 518

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDV 220
           E+ G K +    NS++  +C+  +T+ A  FL  +  R  KP   +Y IL+EG   E   
Sbjct: 519 EEMGVKPNAITYNSIMLGLCKARQTVRAIDFLAYMVARGCKPTETSYMILIEGLAYEGLA 578

Query: 221 ANAKKTFGEM 230
             A +   E+
Sbjct: 579 KEALELLNEL 588


>gi|413938248|gb|AFW72799.1| hypothetical protein ZEAMMB73_717335 [Zea mays]
          Length = 501

 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 93/390 (23%), Positives = 167/390 (42%), Gaps = 54/390 (13%)

Query: 73  VLKFSYSHPGPAVKFFRWSAYQLNDKH---SPYAWNLVVDLLGKNCLFDAMWDAIKSMKK 129
           V+K  + H   A+ FF  +  +L ++    SP   +L +DL  +      +  +I ++  
Sbjct: 72  VIKLLWHHAPRALLFFH-ALLRLPERSRDLSPCTVDLALDLAARLRHPRQLTSSILALFP 130

Query: 130 ENVLSLA--TFASVFSSYVVADRVKD-AITTF-DVMEQYGCKHDVFALNSLLSAICRDGK 185
            + L+    TF  +F  + ++ R  D AI  F  +   +G   D+   NSLL A+ +  +
Sbjct: 131 RHGLAFTPRTFPILFERFAMSHRRPDLAIRLFLSLHRSHGIAQDLPLFNSLLDALVKSRR 190

Query: 186 TIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVP--- 242
              A   +R ++ R  PD  TY  L +GW + +D + A     +MV E G  P       
Sbjct: 191 ASKAASLVRALEQRFPPDAVTYNTLADGWCRVKDTSRALDILRQMV-ESGIAPTKATYNI 249

Query: 243 -------------AYDSYL-------------------ITLLKGCDGIYETVNSLKRMME 270
                        A+D +L                    T+L G  G+   ++  +++ +
Sbjct: 250 ILKGFFRSGQLQHAWDFFLQMKRRGSNDENCKPDVVSYTTVLHGL-GVAGQLDKARKVFD 308

Query: 271 R----GCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYS 326
                GC P    +    +      NL  A  ++  MV R G+ P+   Y ++I   C++
Sbjct: 309 EMSIEGCKPSTATYNALIQVTCKKGNLEDAVAVFDDMV-RKGYIPNVVTYTVLIRGLCHA 367

Query: 327 NETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENC 386
            +   AMKLLD M   G  P++QTYN+L  + ++  ++ +   LF  M K E  L +++ 
Sbjct: 368 GKVVRAMKLLDRMKSEGCEPNVQTYNVLIRYSLEEGEIEKGLDLFETMSKGEECLPNQDT 427

Query: 387 R----AAVRVYMDSDDPYVAIKFWKYMIEN 412
                +A+ V   ++D  VA +    M++ 
Sbjct: 428 YNIIISAMFVRKRAEDMAVAARMVVEMVDR 457


>gi|224160015|ref|XP_002338159.1| predicted protein [Populus trichocarpa]
 gi|222871069|gb|EEF08200.1| predicted protein [Populus trichocarpa]
          Length = 368

 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 78/321 (24%), Positives = 144/321 (44%), Gaps = 17/321 (5%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           T+ ++ +          A   F  M + GC+ DV   ++++ ++C+D +  +A      +
Sbjct: 12  TYTTIINGLCKIGETVAAAGLFKKMGEAGCQPDVVTYSTIIDSLCKDRRVNEALDIFSYM 71

Query: 197 DGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
             + I P+  TY  L++G         A     EM + +   P+ V    S LI +    
Sbjct: 72  KAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEM-MSLNIMPNIVTF--SLLINIFCKE 128

Query: 256 DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEF----IWGAMVGRIGFRP 311
             ++E    LK M E G  P +    + +   + G +L+   F    ++  M+ + G +P
Sbjct: 129 GNVFEARGVLKTMTEMGVEPNV----VTYSSLMNGYSLQAEVFEARKLFDVMITK-GCKP 183

Query: 312 DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLF 371
           D   YN++I+ YC +   G A +L +EM++ G  PDI +YN L + L +  +L EA  LF
Sbjct: 184 DVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLF 243

Query: 372 NEMVKNENVLNHENCRAAVRVYMDSDDPYV--AIKFWKYMIENHCSDLSETGNLLVAGLC 429
             M+ N N+   + C  ++ +       Y+  A + ++ M   +        N+L+  +C
Sbjct: 244 KNMLTNGNL--PDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDAMC 301

Query: 430 DMHMLPEAVKYAKGMAEKGIQ 450
               L EA K    +  +G+Q
Sbjct: 302 KSRNLKEARKLFSELFVQGLQ 322



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 108/235 (45%), Gaps = 7/235 (2%)

Query: 124 IKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICR 182
           +  M   N++ ++ TF+ + + +     V +A      M + G + +V   +SL++    
Sbjct: 103 LNEMMSLNIMPNIVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSL 162

Query: 183 DGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNV 241
             +  +A +   V+  +  KPD  +Y IL+ G+ K + +  AK+ F EM I  G  PD +
Sbjct: 163 QAEVFEARKLFDVMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEM-IHQGLTPD-I 220

Query: 242 PAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWG 301
            +Y++ LI  L     + E  +  K M+  G  P +  + +  +       L  A  ++ 
Sbjct: 221 VSYNT-LIDGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFR 279

Query: 302 AMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFE 356
           AM      +P+  MYN++I   C S     A KL  E+   G  P+++ +  LFE
Sbjct: 280 AMQSTY-LKPNMVMYNILIDAMCKSRNLKEARKLFSELFVQGLQPNMKHWK-LFE 332



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 1/72 (1%)

Query: 303 MVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGR 362
           MV R G++PD H Y  +I+  C   ET AA  L  +M   G  PD+ TY+ + + L K R
Sbjct: 1   MVAR-GYQPDVHTYTTIINGLCKIGETVAAAGLFKKMGEAGCQPDVVTYSTIIDSLCKDR 59

Query: 363 KLWEASGLFNEM 374
           ++ EA  +F+ M
Sbjct: 60  RVNEALDIFSYM 71


>gi|30840221|emb|CAD61285.1| fertility restorer [Raphanus sativus]
 gi|32452380|emb|CAD80165.1| restorer of fertility pentatricopeptide repeat [Raphanus sativus]
 gi|32527602|gb|AAP86198.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
 gi|90903522|gb|ABE02309.1| Rf [Raphanus sativus]
 gi|90903524|gb|ABE02310.1| Rf [Raphanus sativus]
 gi|157931524|gb|ABW04886.1| PPR [Raphanus sativus]
          Length = 687

 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 85/353 (24%), Positives = 145/353 (41%), Gaps = 46/353 (13%)

Query: 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSL----ATFASVFSSYVVADRVKDAITT 157
           Y++N+++      C    +  A+ +  K   L L     TF ++     V DRV +A+  
Sbjct: 115 YSFNILIKCF---CSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALDF 171

Query: 158 FDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEK 216
           F  M +  C+ +V    +L++ +CR+G+ ++A   L R+++  ++P   TY  +++G  K
Sbjct: 172 FHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCK 231

Query: 217 ERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPG 276
           + D  +A     +M  EV     NV  Y + + +L K  DG +    +L   M+      
Sbjct: 232 KGDTVSALNLLRKME-EVSHIIPNVVIYSAIIDSLCK--DGRHSDAQNLFTEMQEK---- 284

Query: 277 MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLL 336
                                          G  PD   YN MI  +C S     A +LL
Sbjct: 285 -------------------------------GIFPDLFTYNSMIVGFCSSGRWSDAEQLL 313

Query: 337 DEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDS 396
            EM+     PD+ TYN L    VK  K +EA  L++EM+    + N     + +  +   
Sbjct: 314 QEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQ 373

Query: 397 DDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
           +    A   +  M    CS    T N L+ G C    + + ++    M E G+
Sbjct: 374 NRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGL 426



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 82/318 (25%), Positives = 142/318 (44%), Gaps = 31/318 (9%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           ++  ++++  S     R  DA   F  M++ G   D+F  NS++   C  G+  DA Q L
Sbjct: 254 NVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLL 313

Query: 194 R-VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
           + +++ +I PD  TY  L+  + KE     A++ + EM+   G  P+ +  Y S +    
Sbjct: 314 QEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPR-GIIPNTI-TYSSMIDGFC 371

Query: 253 KGCDGIYETVNSLKRMMERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRP 311
           K  + +    +    M  +GC+P + TF  L    C   +   G E +    +   G   
Sbjct: 372 KQ-NRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHE--MTETGLVA 428

Query: 312 DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLF 371
           DT  YN +I  +    +  AA+ LL EM+ +G  PDI T + L + L    KL +A  +F
Sbjct: 429 DTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMF 488

Query: 372 NEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDM 431
             M K++  L             D+  P+  ++           D+ +T N+L++GL + 
Sbjct: 489 KVMQKSKKDL-------------DASHPFNGVE----------PDV-QTYNILISGLINE 524

Query: 432 HMLPEAVKYAKGMAEKGI 449
               EA +  + M  +GI
Sbjct: 525 GKFLEAEELYEEMPHRGI 542



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 62/261 (23%), Positives = 104/261 (39%), Gaps = 22/261 (8%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RV 195
           T++S+   +   +R+  A   F +M   GC  ++   N+L+   C   +  D  + L  +
Sbjct: 362 TYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEM 421

Query: 196 VDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG- 254
            +  +  D  TY  L+ G+    D+  A     EM I  G  PD V        TLL G 
Sbjct: 422 TETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEM-ISSGLCPDIVTCD-----TLLDGL 475

Query: 255 CD-GIYETVNSLKRMMER------------GCNPGMTFFKLAFEECLTGQNLRGAEFIWG 301
           CD G  +    + ++M++            G  P +  + +     +       AE ++ 
Sbjct: 476 CDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYE 535

Query: 302 AMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKG 361
            M  R G  PDT  Y+ MI   C  +    A ++ D M      P++ T+  L     K 
Sbjct: 536 EMPHR-GIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKA 594

Query: 362 RKLWEASGLFNEMVKNENVLN 382
            ++ +   LF EM +   V N
Sbjct: 595 GRVDDGLELFCEMGRRGIVAN 615



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 57/256 (22%), Positives = 99/256 (38%), Gaps = 18/256 (7%)

Query: 132 VLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ 191
           V    T+ ++   + +   +  A+     M   G   D+   ++LL  +C +GK  DA +
Sbjct: 427 VADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALE 486

Query: 192 FLRVVD------------GRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPD 239
             +V+               ++PD  TY IL+ G   E     A++ + EM    G  PD
Sbjct: 487 MFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMP-HRGIVPD 545

Query: 240 NVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGM-TFFKLAFEECLTGQNLRGAEF 298
            +  Y S +  L K    + E       M  +  +P + TF  L    C  G+   G E 
Sbjct: 546 TI-TYSSMIDGLCKQ-SRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLEL 603

Query: 299 IWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFL 358
                +GR G   +   Y  +I  +        A+ +  EM+ +G +PD  T   +   L
Sbjct: 604 F--CEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGL 661

Query: 359 VKGRKLWEASGLFNEM 374
               +L  A  +  ++
Sbjct: 662 WSKEELKRAVAMLEKL 677


>gi|21593376|gb|AAM65325.1| unknown [Arabidopsis thaliana]
          Length = 487

 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 94/386 (24%), Positives = 163/386 (42%), Gaps = 65/386 (16%)

Query: 42  LCEIIANTPSPT-----VEDVLDKTLIRVSQETVEQVLKFSYSHPGPA--VKFFRWSAYQ 94
           L E+I    SP      +E+ L++  +  S   V QV++   +   P   ++FF WS   
Sbjct: 37  LHEVIRIVSSPVGGLDDLEENLNQVSVSPSSNLVTQVIESCKNETSPRRLLRFFSWSCKS 96

Query: 95  LNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKEN-VLSLATFASVFSSYVVADRVKD 153
           L        +N V+ +L +     AM   +  ++KEN  +   TF+ V  + V   + +D
Sbjct: 97  LGSSLHDKEFNYVLRVLAEKKDHTAMQILLSDLRKENRAMDKQTFSIVAETLVKIGKEED 156

Query: 154 AITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR----VVDGRIKPDNDTYAI 209
           AI  F +++++ C  D F + +++SA+C  G    A   +     V+ G    +   Y  
Sbjct: 157 AIGIFKILDKFSCPQDGFTVTAIISALCSRGHVKRALGVMHHHKDVISGN---ELSVYRS 213

Query: 210 LLEGWEKERDVANAKKTFGEMVIEVGWDPD--------------NV-------------- 241
           LL GW  +R+V  A++   +M    G  PD              NV              
Sbjct: 214 LLFGWSVQRNVKEARRVIQDMK-SAGITPDLFCFNSLLTCLCERNVNRNPSGLVPEALNI 272

Query: 242 ----------PAYDSY--LITLLKGCDGIYETVNSLKRMMERGCNPGM-TFFKLAFEECL 288
                     P   SY  L++ L     + E+   L++M   GC+P   +++ +     L
Sbjct: 273 MLEMRSYKIQPTSMSYNILLSCLGRTRRVRESCQILEQMKRSGCDPDTGSYYFVVRVLYL 332

Query: 289 TGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDI 348
           TG+  +G + +   M+ R GFRP+   Y  +I + C       A++L ++M  +      
Sbjct: 333 TGRFGKGNQIV-DEMIER-GFRPERKFYYDLIGVLCGVERVNFALQLFEKMKRSSVGGYG 390

Query: 349 QTYNILFEFLV------KGRKLWEAS 368
           Q Y++L   L       KGR+LWE +
Sbjct: 391 QVYDLLIPKLCKGGNFEKGRELWEEA 416


>gi|357455405|ref|XP_003597983.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355487031|gb|AES68234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 520

 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 102/408 (25%), Positives = 173/408 (42%), Gaps = 29/408 (7%)

Query: 65  VSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAI 124
           V   TV   L    +    A++FF W   +   +HS   +NLV+D+LGK   F   W+ I
Sbjct: 74  VDHTTVRATLTSFNNDYKRALEFFNWVETKFKFQHSTETYNLVLDILGKFFEFQQCWNLI 133

Query: 125 KSMKKENVLSL---ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAIC 181
             M ++N  SL    TF  +F  YV A  V+DA+ TF  + ++  K D  + ++L+ A+C
Sbjct: 134 HRM-RQNPHSLPNHTTFRVMFKRYVSAHCVQDAVNTFQRLNEFNLK-DETSFSNLIDALC 191

Query: 182 RDGKTIDA--------------WQFLRVVDGRIKPDNDT--YAILLEGWEKERDVANAKK 225
                ++A              W  +  VDG +    +T  + I+L GW K    +   +
Sbjct: 192 EYKHVLEAQDLVFGDKKNQTLTW-IVDGVDGFVASSKNTKIFNIVLRGWYKLGWWSKCWE 250

Query: 226 TFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFE 285
            + EM    G + D + +Y  Y+  L KG    ++ V   K M  +G    +  + +   
Sbjct: 251 FWDEM-DRRGVEKD-LHSYSIYMDILSKGGKP-WKAVKLFKEMKRKGIQLDVVVYNIVIR 307

Query: 286 ECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAF 345
                Q +  +  ++  M   +G  P    YN +I L C S     A+ L+  M  +G  
Sbjct: 308 AIGVSQGVDFSIRMFCEM-KDLGLNPTVVTYNTIIRLLCDSYRYKEALTLIRTMRRDGCS 366

Query: 346 PDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKF 405
           P+  +Y   F  L K + + E   LF+ M+++      +     ++ +       +    
Sbjct: 367 PNAVSYQCFFACLEKPKFIIE---LFDGMIESGVRPTMDTYVMLLKKFARWGFLRLVFLV 423

Query: 406 WKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTP 453
           W  M E  CS  +   N L+  L +  ++  A KY + M  KG+   P
Sbjct: 424 WNRMEELGCSPDASAYNALIDALVEKGLIDMARKYDEEMLAKGLSPKP 471


>gi|357454671|ref|XP_003597616.1| hypothetical protein MTR_2g100200 [Medicago truncatula]
 gi|124360397|gb|ABN08410.1| Pentatricopeptide repeat [Medicago truncatula]
 gi|355486664|gb|AES67867.1| hypothetical protein MTR_2g100200 [Medicago truncatula]
          Length = 527

 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 101/432 (23%), Positives = 170/432 (39%), Gaps = 50/432 (11%)

Query: 53  TVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLG 112
            +E  L    I V+ + + +VL F        V FF W+  Q        +++++V  LG
Sbjct: 88  AIEQALSNVCIDVNVDIIGKVLNFGNLGGEAMVMFFNWALKQPMVPRDVGSYHVIVKALG 147

Query: 113 KNCLFDAMWDAIKSMKKENVLS-LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVF 171
           +   F  M   +  M+   + + L   + V  S+V A  V  AI  F  ++  G   D  
Sbjct: 148 RRKFFVFMMQVLDEMRLNGIKADLLMLSIVIDSFVNAGHVSKAIQLFGNLDDLGLCRDTE 207

Query: 172 ALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMV 231
            LN LLS +CR      A      + G++  + DTY +++ GW K   V   +K   EM 
Sbjct: 208 VLNVLLSCLCRRCHVGAAASVFNSMKGKVSFNVDTYNVVVGGWSKLGRVNEIEKVMKEME 267

Query: 232 IEVGWDPD-NVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTG 290
           +E G+ PD N  A+               E +    RM E                    
Sbjct: 268 VE-GFSPDFNTLAF-------------FLEGLGRAGRMDE-------------------- 293

Query: 291 QNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQT 350
                A  ++G+M  +     DT +YN MI  +    +    MK  + M+ +   P+I T
Sbjct: 294 -----AVEVFGSMKEK-----DTAIYNAMIFNFISIGDFDGFMKYYNGMLSDNCEPNIHT 343

Query: 351 YNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMI 410
           Y+ +    ++ RK+ +A  +F+EM++   V       + ++       PY A+  +K   
Sbjct: 344 YSRMITAFLRTRKVADALLMFDEMLRQGVVPPTGTITSFIKQLCSYGPPYAAMMIYKKTR 403

Query: 411 ENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKG----IQVTPFALSKLKQILIKA 466
           +  C    E   +L+  L         +   + M E G    ++V  + +S L  I    
Sbjct: 404 KLECKISMEAYKILLMRLSKFGKCGSLLSVWQEMQECGYSSDVEVYEYIISGLYNIGQLE 463

Query: 467 RKEAVYEELLKK 478
               V EE L+K
Sbjct: 464 NAVLVMEEALRK 475


>gi|225436259|ref|XP_002275952.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15010,
           mitochondrial-like [Vitis vinifera]
          Length = 566

 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 98/405 (24%), Positives = 157/405 (38%), Gaps = 12/405 (2%)

Query: 54  VEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGK 113
           V+  L+   +  S E V +VL    +H   A  FF W+A Q    HS  A++ ++ +LGK
Sbjct: 100 VKHKLESCGVAASSELVVEVLSRVRNHWEAAFTFFLWAAKQPGYAHSLRAYHSMISILGK 159

Query: 114 NCLFDAMWDAIKSMK----KENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHD 169
              FD  W  I  M+      ++++  T + +   Y     V  AI TF   +Q+     
Sbjct: 160 MRKFDTAWALIDEMRGGRTGTSLVTPHTLSIMIRRYCAVHDVGKAINTFYAHKQFKFGVG 219

Query: 170 VFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGE 229
           +    +LLSA+CR     DA Q L         D  ++ I+L GW          + F  
Sbjct: 220 IEEFQNLLSALCRYKNVQDAEQLLFCNRNVFPFDTKSFNIILNGWCNVIGSMREAERFWR 279

Query: 230 MVIEVGWDPDNVPAYDSYLITL-LKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECL 288
            +   G   D V           +   + + +  N +K M      P    +        
Sbjct: 280 EMSNRGIQRDVVSYSSIISCYSKVTNLNKVLKLFNQMKEM---EIAPDRKVYNAVVHALA 336

Query: 289 TGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDI 348
               ++ A  +  AM G+ G  PD+  YN +I     + +   A ++ DEM+  G  P I
Sbjct: 337 KASFVKEALNLMKAMEGK-GIAPDSVTYNSLIKPLSRARKINEAKEVFDEMLQRGLSPTI 395

Query: 349 QTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKY 408
           +TY+  F  L  G +++    L  +M +     + +     +R +          K W  
Sbjct: 396 RTYHAFFRILKSGEEVFM---LLEKMKETGCHPDKDTYIMLIRRFCRWRQLDNVFKLWSE 452

Query: 409 MIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTP 453
           M EN       +  +L+ GL     L EA KY   M EK     P
Sbjct: 453 MSENGVGPDRSSYIVLIHGLFLNGKLEEAYKYYIEMKEKQFLPEP 497


>gi|147819144|emb|CAN78081.1| hypothetical protein VITISV_021300 [Vitis vinifera]
          Length = 778

 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 94/368 (25%), Positives = 147/368 (39%), Gaps = 43/368 (11%)

Query: 118 DAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLL 177
           +A  DAIK     NV    TF  V   Y + ++ KDA+   +VM +Y C  D    N++L
Sbjct: 194 EAFNDAIKLGIVPNV---NTFNIVIYGYCLENKFKDAVEFLNVMGKYNCSPDNVTYNTIL 250

Query: 178 SAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGW 236
            A+C+ G+  DA   L  +  R + P+ +TY IL+ G+ K   +  A     E++ +   
Sbjct: 251 DALCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVI-ELMTQNNL 309

Query: 237 DPDN-------------------------------VPAYDSYLITLLKGC---DGIYETV 262
            PD                                +P   SY  TL+ GC     I E  
Sbjct: 310 LPDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSY-NTLINGCLEWSKISEAF 368

Query: 263 NSLKRMMERGCNPGMTFFKLAFE-ECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMIS 321
             L+ M E+G  P      +  +  C  G+    +  I    +   GF PD   YN +I+
Sbjct: 369 KLLEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTI--TKMEESGFSPDCVTYNTLIN 426

Query: 322 LYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVL 381
            YC +   G A + +DEM       D  T N +   L + +KL EA  L +   K    +
Sbjct: 427 GYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRGYFI 486

Query: 382 NHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYA 441
           +  +    +  Y    +   A+K W  M E      + T N ++ GLC      +A+   
Sbjct: 487 DEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQAISKL 546

Query: 442 KGMAEKGI 449
             + E G+
Sbjct: 547 NELLESGL 554



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 74/280 (26%), Positives = 122/280 (43%), Gaps = 11/280 (3%)

Query: 136 ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRV 195
            T+ ++ + Y  A  + +A  T D M +   K D   LN++L  +CR+ K  +A++ L  
Sbjct: 419 VTYNTLINGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSS 478

Query: 196 VDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSY--LITLL 252
              R    D  +Y  L+ G+ K+ +V  A K + EM      + + +P+  +Y  +I  L
Sbjct: 479 ARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMK-----EKEIIPSTVTYNCIIGGL 533

Query: 253 KGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEE-CLTGQNLRGAEFIWGAMVGRIGFRP 311
             C    + ++ L  ++E G  P  T +       C  G   +  +F    MV    F+P
Sbjct: 534 CQCGKTEQAISKLNELLESGLLPDETTYNTILHGYCREGDVEKAFQF-HNKMVEN-SFKP 591

Query: 312 DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLF 371
           D    N+++   C       A+KL +  V  G   D  TYN L   L K  +L +A  L 
Sbjct: 592 DVFTCNILLRGLCMEGMLEKALKLFNTWVSKGKAIDTVTYNTLITSLCKEGRLDDAFNLL 651

Query: 372 NEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIE 411
           +EM + E   +H    A +    DS     A +F   M+E
Sbjct: 652 SEMEEKELGPDHYTYNAIITALTDSGRIREAEEFMSKMLE 691



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 106/460 (23%), Positives = 181/460 (39%), Gaps = 30/460 (6%)

Query: 39  IKTLCEIIANTPSPTVEDVLDKTLIRVSQETVEQVL--KFSYSHPGPAVKFFRWSAYQL- 95
           I+T+  I+A+   P     L+  + +++   V  +L  K   S P   + FF+W+   L 
Sbjct: 24  IQTITTILASNNMPL--QALNTYIPQLTPPLVLSILSSKTLISRPNILISFFKWAQTNLP 81

Query: 96  --------------NDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASV 141
                             S   ++    LL      D   D   S+ +    S A   + 
Sbjct: 82  TFPHNSLPSLLSLLPSLFSHRKFSDAKSLLLGFIATDRRHDLHLSILRLTSPSKALLDTA 141

Query: 142 FSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICR----DGKTIDAWQFLRVVD 197
             +YV + +   A   F  M++   + ++   N+LL+++ R       +     F   + 
Sbjct: 142 IGAYVQSGQPHHAFQIFKKMKRLRLRPNLLTCNTLLNSLVRYPSSHSVSFSREAFNDAIK 201

Query: 198 GRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDG 257
             I P+ +T+ I++ G+  E    +A + F  ++ +    PDNV  Y++ L  L K    
Sbjct: 202 LGIVPNVNTFNIVIYGYCLENKFKDAVE-FLNVMGKYNCSPDNV-TYNTILDALCKK-GR 258

Query: 258 IYETVNSLKRMMERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMY 316
           + +  + L  M  RG  P   T+  L +  C  G     A  I   ++ +    PD   Y
Sbjct: 259 LGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVI--ELMTQNNLLPDVWTY 316

Query: 317 NMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK 376
           NM+I+  C       A KL DEM      PD+ +YN L    ++  K+ EA  L  EM +
Sbjct: 317 NMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSE 376

Query: 377 NENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPE 436
                N       V+ Y        A      M E+  S    T N L+ G C    + E
Sbjct: 377 KGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGNMGE 436

Query: 437 AVKYAKGMAEKGIQVTPFALSKLKQILIKARK-EAVYEEL 475
           A +    M  K +++    L+ + + L + +K E  Y+ L
Sbjct: 437 AFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLL 476



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 80/346 (23%), Positives = 143/346 (41%), Gaps = 6/346 (1%)

Query: 122 DAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAI 180
           + I+ M + N+L  + T+  + +      R+++A    D ME      DV + N+L++  
Sbjct: 299 NVIELMTQNNLLPDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGC 358

Query: 181 CRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPD 239
               K  +A++ L  +  + +KP+  T+ I+++ + KE  + +A  T  +M  E G+ PD
Sbjct: 359 LEWSKISEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKME-ESGFSPD 417

Query: 240 NVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFI 299
            V  Y++ +    K  + + E   ++  M  +                   + L  A  +
Sbjct: 418 CV-TYNTLINGYCKAGN-MGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKL 475

Query: 300 WGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLV 359
             +   R G+  D   Y  +I  Y        A+KL DEM      P   TYN +   L 
Sbjct: 476 LSSARKR-GYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLC 534

Query: 360 KGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSE 419
           +  K  +A    NE++++  + +       +  Y    D   A +F   M+EN       
Sbjct: 535 QCGKTEQAISKLNELLESGLLPDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVF 594

Query: 420 TGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIK 465
           T N+L+ GLC   ML +A+K       KG  +     + L   L K
Sbjct: 595 TCNILLRGLCMEGMLEKALKLFNTWVSKGKAIDTVTYNTLITSLCK 640


>gi|9755668|emb|CAC01820.1| putative protein [Arabidopsis thaliana]
          Length = 532

 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 93/402 (23%), Positives = 166/402 (41%), Gaps = 21/402 (5%)

Query: 58  LDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLF 117
           L++  ++ S E V ++L    +    A  FF W+  Q     S   ++ ++ +LGK   F
Sbjct: 78  LEECDVKPSNELVVEILSRVRNDWETAFTFFVWAGKQQGYVRSVREYHSMISILGKMRKF 137

Query: 118 DAMWDAIKSMKK--ENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNS 175
           D  W  I  M+K   ++++  T   +   Y     V  AI TF   +++  +  +    S
Sbjct: 138 DTAWTLIDEMRKFSPSLVNSQTLLIMIRKYCAVHDVGKAINTFHAYKRFKLEMGIDDFQS 197

Query: 176 LLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVG 235
           LLSA+CR     DA   +     +   D  ++ I+L GW    +V  + +    + +E+G
Sbjct: 198 LLSALCRYKNVSDAGHLIFCNKDKYPFDAKSFNIVLNGW---CNVIGSPREAERVWMEMG 254

Query: 236 --WDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNL 293
                 +V +Y S +    KG   + + +    RM +    P    +            +
Sbjct: 255 NVGVKHDVVSYSSMISCYSKG-GSLNKVLKLFDRMKKECIEPDRKVYNAVVHALAKASFV 313

Query: 294 RGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNI 353
             A  +   M    G  P+   YN +I   C + +T  A ++ DEM+  G FP I+TY+ 
Sbjct: 314 SEARNLMKTMEEEKGIEPNVVTYNSLIKPLCKARKTEEAKQVFDEMLEKGLFPTIRTYHA 373

Query: 354 LFEFLVKGRKLWEASGLFNEM-----VKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKY 408
               L  G +++E      +M     V+   +L  + CR     + D D+    +  W  
Sbjct: 374 FMRILRTGEEVFELLAKMRKMGCEPTVETYIMLIRKLCR-----WRDFDN---VLLLWDE 425

Query: 409 MIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQ 450
           M E        +  +++ GL     + EA  Y K M +KG++
Sbjct: 426 MKEKTVGPDLSSYIVMIHGLFLNGKIEEAYGYYKEMKDKGMR 467


>gi|115476116|ref|NP_001061654.1| Os08g0369200 [Oryza sativa Japonica Group]
 gi|113623623|dbj|BAF23568.1| Os08g0369200 [Oryza sativa Japonica Group]
 gi|125603197|gb|EAZ42522.1| hypothetical protein OsJ_27088 [Oryza sativa Japonica Group]
 gi|215740653|dbj|BAG97309.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 511

 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 96/391 (24%), Positives = 157/391 (40%), Gaps = 21/391 (5%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVME 162
           A++ VVD LG+   FDA W  +     +   +  TFA +   YV A   + A+  FD ME
Sbjct: 105 AYDAVVDALGRARQFDAAWRLVVEAAADGAATPRTFAVLARRYVAAGMTRQAVRAFDDME 164

Query: 163 QY-GCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVA 221
            + G + D     +LL  +C+      A +       + +P+   Y +L+ GW K     
Sbjct: 165 AFVGREPDAAEFTTLLDTLCKYKYPKVAAEVFNKRKYKYEPNEKMYTVLIYGWCKVNRND 224

Query: 222 NAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD---------GIYETVNSLKRMMERG 272
            A+K   +M+   G +P N+  Y+  L  + +             +    + LK M +RG
Sbjct: 225 MAQKFLKDMIYH-GIEP-NIVTYNILLNGICRHASLHPDYRFDRTVRAAEDLLKEMHQRG 282

Query: 273 CNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAA 332
             P +T + +                ++ +M  R G  P    Y  +I           A
Sbjct: 283 IEPNVTSYSVILHVYSRAHKPELCLCMFRSMKER-GICPTVATYTSVIKCLASCGRLDDA 341

Query: 333 MKLLDEMVYNGAFPDIQTYNILFEFLVKGRK-LWEASGLFNEMVKNENV----LNHENCR 387
             LLDEM   G  P   TYN  F+   +GRK +  A  L+N+M    +     ++  N  
Sbjct: 342 ESLLDEMASEGVCPSPATYNCFFK-EYRGRKDVNGALQLYNKMKAPGSPATPDIHTYNIL 400

Query: 388 AAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEK 447
             + + ++  D    ++ W  M E+       +  LLV GLCD     EA ++   M E+
Sbjct: 401 LGMFIKLNQHD--TVMQVWNDMCESTVGPDLNSYTLLVHGLCDNKKWREACQFFMEMIER 458

Query: 448 GIQVTPFALSKLKQILIKARKEAVYEELLKK 478
           G          L + LI+A     +  L K+
Sbjct: 459 GFLPQKITFETLYRGLIQADMLRTWRRLKKR 489


>gi|357499959|ref|XP_003620268.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495283|gb|AES76486.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 652

 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 84/359 (23%), Positives = 153/359 (42%), Gaps = 9/359 (2%)

Query: 125 KSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDG 184
           K +K   V    TF ++     +  +++ A    D +   G   D  +  +L+  +C+ G
Sbjct: 145 KILKMGYVPDTITFTTLIKGLCLKGQIQQAFLFHDKVVALGFHFDQISYGTLIHGLCKVG 204

Query: 185 KTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPA 243
           +T  A   L+ VDG  ++P+   Y  +++   K + V  A   F EM I  G  PD V  
Sbjct: 205 ETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEM-ISKGISPDVVTY 263

Query: 244 YDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAM 303
             S LI+       + + ++   +M+     P +  F +          ++  + ++  M
Sbjct: 264 --SALISGFCILGKLNDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMM 321

Query: 304 VGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRK 363
           + + G +P+   YN ++  YC   E   A  + + M   G  PDIQ+Y+I+     K +K
Sbjct: 322 MKQ-GIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKK 380

Query: 364 LWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNL 423
             EA  LF EM +   + +     + +     S     A++    M +        T N 
Sbjct: 381 FDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPTIRTYNS 440

Query: 424 LVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARK----EAVYEELLKK 478
           ++  LC +H + +A+     + +KGIQ   +  S L + L ++ K      V+E LL K
Sbjct: 441 ILDALCKIHQVDKAIALLTKLKDKGIQPNMYTYSILIKGLCQSGKLEDARKVFEGLLVK 499



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 88/382 (23%), Positives = 171/382 (44%), Gaps = 8/382 (2%)

Query: 104 WNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVME 162
           +N ++D + K  L +  +D    M  + +   + T++++ S + +  ++ DAI  F+ M 
Sbjct: 228 YNTIIDSMCKVKLVNEAFDLFSEMISKGISPDVVTYSALISGFCILGKLNDAIDLFNKMI 287

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDVA 221
               K DV+  N L++A C+DGK  +    F  ++   IKP+  TY  L++G+   ++V 
Sbjct: 288 LENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVN 347

Query: 222 NAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFK 281
            AK  F  M  + G +PD + +Y S +I          E +N  K M  +   P +  + 
Sbjct: 348 KAKSIFNTMA-QGGVNPD-IQSY-SIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYS 404

Query: 282 LAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVY 341
              +       +  A  +   M  R G  P    YN ++   C  ++   A+ LL ++  
Sbjct: 405 SLIDGLSKSGRISYALQLVDQMHDR-GVPPTIRTYNSILDALCKIHQVDKAIALLTKLKD 463

Query: 342 NGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYV 401
            G  P++ TY+IL + L +  KL +A  +F  ++   + LN +     ++ +        
Sbjct: 464 KGIQPNMYTYSILIKGLCQSGKLEDARKVFEGLLVKGHNLNVDTYTIMIQGFCVEGLFNE 523

Query: 402 AIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFAL--SKL 459
           A+     M +N C   ++T  +++  L        A K  + M  +G++    A+   K 
Sbjct: 524 ALALLSKMEDNGCIPDAKTYEIIILSLFKKDENDMAEKLLREMIARGVRPRQIAIWFQKK 583

Query: 460 KQILIKARKEAVYEELLKKCKA 481
           K+  + +  + + E+ + K KA
Sbjct: 584 KEYDVSSEPKTLTEQSVPKFKA 605


>gi|8493580|gb|AAF75803.1|AC011000_6 Contains weak similarity to leaf protein from Ipomea nil gb|D85101
           and contains a RepB PF|01051 protein and multiple PPR
           PF|01535 repeats [Arabidopsis thaliana]
          Length = 613

 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 76/304 (25%), Positives = 138/304 (45%), Gaps = 5/304 (1%)

Query: 136 ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRV 195
            TF ++     + ++  +A+   D M   GC+ D+F   ++++ +C+ G    A   L+ 
Sbjct: 170 VTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKK 229

Query: 196 VD-GRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG 254
           ++ G+I+ D   Y  +++     ++V +A   F EM    G  P NV  Y+S LI  L  
Sbjct: 230 MEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMD-NKGIRP-NVVTYNS-LIRCLCN 286

Query: 255 CDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTH 314
                +    L  M+ER  NP +  F    +  +    L  AE ++  M+ R    PD  
Sbjct: 287 YGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKR-SIDPDIF 345

Query: 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
            Y+ +I+ +C  +    A  + + M+    FP++ TYN L +   K +++ E   LF EM
Sbjct: 346 TYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREM 405

Query: 375 VKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHML 434
            +   V N       ++    + D  +A K +K M+ +       T ++L+ GLC    L
Sbjct: 406 SQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKL 465

Query: 435 PEAV 438
            +A+
Sbjct: 466 EKAL 469



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 75/298 (25%), Positives = 139/298 (46%), Gaps = 14/298 (4%)

Query: 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLS-LATFASVFSSYVVADRVKDAITTFDV 160
           + +  VV+ L K    D     +K M+K  + + +  + ++  +      V DA+  F  
Sbjct: 205 FTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTE 264

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYAILLEGWEKERD 219
           M+  G + +V   NSL+  +C  G+  DA + L  +++ +I P+  T++ L++ + KE  
Sbjct: 265 MDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGK 324

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTF 279
           +  A+K + EM I+   DPD +  Y S LI      D + E  +  + M+ + C P +  
Sbjct: 325 LVEAEKLYDEM-IKRSIDPD-IFTYSS-LINGFCMHDRLDEAKHMFELMISKDCFPNVVT 381

Query: 280 FKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEM 339
           +    +     + +     ++  M  R G   +T  YN +I     + +   A K+  +M
Sbjct: 382 YNTLIKGFCKAKRVEEGMELFREMSQR-GLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKM 440

Query: 340 VYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNE--------NVLNHENCRAA 389
           V +G  PDI TY+IL + L K  KL +A  +F  + K++        N++    C+A 
Sbjct: 441 VSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAG 498



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 89/413 (21%), Positives = 158/413 (38%), Gaps = 53/413 (12%)

Query: 111 LGKNCLFDAMWDAIKSMKKENVLS-----LATFASVFSSYVVADRVKDAITTFDVMEQYG 165
           L +N L D   D    +  E V S     +  F  + S+    ++    I+  + M+   
Sbjct: 35  LSRNVLLDLKLDDAVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLR 94

Query: 166 CKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERDVANAK 224
             +D+++ N L++  CR  +   A   L +++    +PD  T + LL G+   + ++ A 
Sbjct: 95  ISYDLYSYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAV 154

Query: 225 KTFGEMVIEVGWDPDNVPAYDSYLITLLKGC---DGIYETVNSLKRMMERGCNPGM-TFF 280
               +M + + + P+ V        TL+ G    +   E V  + RM+ RGC P + T+ 
Sbjct: 155 ALVDQMFV-MEYQPNTVT-----FNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYG 208

Query: 281 KLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMV 340
            +    C  G        +     G+I    D  +Y  +I   C       A+ L  EM 
Sbjct: 209 TVVNGLCKRGDIDLALSLLKKMEKGKI--EADVVIYTTIIDALCNYKNVNDALNLFTEMD 266

Query: 341 YNGAFPDIQTYNILFEFL-----------------------------------VKGRKLW 365
             G  P++ TYN L   L                                   VK  KL 
Sbjct: 267 NKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLV 326

Query: 366 EASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLV 425
           EA  L++EM+K     +     + +  +   D    A   ++ MI   C     T N L+
Sbjct: 327 EAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLI 386

Query: 426 AGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKK 478
            G C    + E ++  + M+++G+       + L Q L +A    + +++ KK
Sbjct: 387 KGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKK 439



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 62/282 (21%), Positives = 118/282 (41%), Gaps = 15/282 (5%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-F 192
           ++ TF+++  ++V   ++ +A   +D M +     D+F  +SL++  C   +  +A   F
Sbjct: 308 NVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMF 367

Query: 193 LRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIE--VGWDPDNVPAYDSYLIT 250
             ++     P+  TY  L++G+ K + V    + F EM     VG    N   Y++ +  
Sbjct: 368 ELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVG----NTVTYNTLIQG 423

Query: 251 LLKG--CDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIG 308
           L +   CD   +     K+M+  G  P +  + +  +       L  A  ++   + +  
Sbjct: 424 LFQAGDCDMAQKI---FKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVF-EYLQKSK 479

Query: 309 FRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFE-FLVKGRKLWEA 367
             PD + YN+MI   C + +      L   +   G  P++  Y  +   F  KG K  EA
Sbjct: 480 MEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLK-EEA 538

Query: 368 SGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYM 409
             LF EM ++  + N       +R  +   D   + +  K M
Sbjct: 539 DALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASAELIKEM 580


>gi|15218284|ref|NP_172453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75276860|sp|O04504.1|PPR27_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09820
 gi|2160173|gb|AAB60736.1| Similar to N. tabacum salt-inducible protein (gb|U08285)
           [Arabidopsis thaliana]
 gi|332190378|gb|AEE28499.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 606

 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 74/279 (26%), Positives = 136/279 (48%), Gaps = 18/279 (6%)

Query: 106 LVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYG 165
           L++ LL +N   D  +   + ++++   ++ TF  V ++     ++  A    + M+ YG
Sbjct: 194 LMIALLKENRSADVEYVYKEMIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYG 253

Query: 166 CKHDVFALNSLLSAICR---DGKTIDAWQFLR-VVDGRIKPDNDTYAILLEGWEKERDVA 221
           C  +V + N+L+   C+   +GK   A   L+ +V+  + P+  T+ IL++G+ K+ ++ 
Sbjct: 254 CSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEMVENDVSPNLTTFNILIDGFWKDDNLP 313

Query: 222 NAKKTFGEMVIEVGWDPD---NVPAYDSYLITLLKGCDG--IYETVNSLKRMMERGCNPG 276
            + K F EM+     D D   NV +Y+S +  L   C+G  I E ++   +M+  G  P 
Sbjct: 314 GSMKVFKEML-----DQDVKPNVISYNSLINGL---CNGGKISEAISMRDKMVSAGVQPN 365

Query: 277 MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLL 336
           +  +            L+ A  ++G++ G+ G  P T MYNM+I  YC   +      L 
Sbjct: 366 LITYNALINGFCKNDMLKEALDMFGSVKGQ-GAVPTTRMYNMLIDAYCKLGKIDDGFALK 424

Query: 337 DEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
           +EM   G  PD+ TYN L   L +   +  A  LF+++ 
Sbjct: 425 EEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLT 463



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 72/311 (23%), Positives = 133/311 (42%), Gaps = 10/311 (3%)

Query: 144 SYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDA-WQFLRVVDGRIKP 202
           +Y    R +     F     YG K    +   L+ A+ ++ ++ D  + +  ++  +I+P
Sbjct: 162 AYANNSRFELGFEAFKRSGYYGYKLSALSCKPLMIALLKENRSADVEYVYKEMIRRKIQP 221

Query: 203 DNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYL--ITLLKGCDGIYE 260
           +  T+ +++    K   +  A+    +M +  G  P NV +Y++ +     L G   +Y+
Sbjct: 222 NVFTFNVVINALCKTGKMNKARDVMEDMKV-YGCSP-NVVSYNTLIDGYCKLGGNGKMYK 279

Query: 261 TVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMI 320
               LK M+E   +P +T F +  +      NL G+  ++  M+ +   +P+   YN +I
Sbjct: 280 ADAVLKEMVENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQ-DVKPNVISYNSLI 338

Query: 321 SLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENV 380
           +  C   +   A+ + D+MV  G  P++ TYN L     K   L EA  +F  +     V
Sbjct: 339 NGLCNGGKISEAISMRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQGAV 398

Query: 381 LNHENCRAAVRVY--MDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAV 438
                    +  Y  +   D   A+K  +   E    D+  T N L+AGLC    +  A 
Sbjct: 399 PTTRMYNMLIDAYCKLGKIDDGFALK-EEMEREGIVPDVG-TYNCLIAGLCRNGNIEAAK 456

Query: 439 KYAKGMAEKGI 449
           K    +  KG+
Sbjct: 457 KLFDQLTSKGL 467



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 71/283 (25%), Positives = 122/283 (43%), Gaps = 18/283 (6%)

Query: 103 AWNLVVD----LLGKNCLFDAMWDAIKSMKKENVLS--LATFASVFSSYVVADRVKDAIT 156
           ++N ++D    L G   ++ A  DA+     EN +S  L TF  +   +   D +  ++ 
Sbjct: 260 SYNTLIDGYCKLGGNGKMYKA--DAVLKEMVENDVSPNLTTFNILIDGFWKDDNLPGSMK 317

Query: 157 TFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWE 215
            F  M     K +V + NSL++ +C  GK  +A     ++V   ++P+  TY  L+ G+ 
Sbjct: 318 VFKEMLDQDVKPNVISYNSLINGLCNGGKISEAISMRDKMVSAGVQPNLITYNALINGFC 377

Query: 216 KERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD-GIYETVNSLKRMMER-GC 273
           K   +  A   FG +          VP    Y + +   C  G  +   +LK  MER G 
Sbjct: 378 KNDMLKEALDMFGSV-----KGQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGI 432

Query: 274 NPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAM 333
            P +  +           N+  A+ ++  +  + G  PD   +++++  YC   E+  A 
Sbjct: 433 VPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTSK-GL-PDLVTFHILMEGYCRKGESRKAA 490

Query: 334 KLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK 376
            LL EM   G  P   TYNI+ +   K   L  A+ +  +M K
Sbjct: 491 MLLKEMSKMGLKPRHLTYNIVMKGYCKEGNLKAATNMRTQMEK 533



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 62/285 (21%), Positives = 126/285 (44%), Gaps = 10/285 (3%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVM 161
            +N+++D   K+          K M  ++V  ++ ++ S+ +      ++ +AI+  D M
Sbjct: 298 TFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVISYNSLINGLCNGGKISEAISMRDKM 357

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDV 220
              G + ++   N+L++  C++    +A      V G+   P    Y +L++ + K   +
Sbjct: 358 VSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKI 417

Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSL-KRMMERGCNPGMTF 279
            +      EM  E G  PD V  Y+  +  L +  +G  E    L  ++  +G    +TF
Sbjct: 418 DDGFALKEEMERE-GIVPD-VGTYNCLIAGLCR--NGNIEAAKKLFDQLTSKGLPDLVTF 473

Query: 280 FKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEM 339
             L    C  G++ + A  +    + ++G +P    YN+++  YC      AA  +  +M
Sbjct: 474 HILMEGYCRKGESRKAAMLL--KEMSKMGLKPRHLTYNIVMKGYCKEGNLKAATNMRTQM 531

Query: 340 VYNGAFP-DIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNH 383
                   ++ +YN+L +   +  KL +A+ L NEM++   V N 
Sbjct: 532 EKERRLRMNVASYNVLLQGYSQKGKLEDANMLLNEMLEKGLVPNR 576



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 60/249 (24%), Positives = 108/249 (43%), Gaps = 12/249 (4%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           +L T+ ++ + +   D +K+A+  F  ++  G        N L+ A C+ GK  D +   
Sbjct: 365 NLITYNALINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKIDDGFALK 424

Query: 194 RVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
             ++   I PD  TY  L+ G  +  ++  AKK F ++          +P   ++ I L+
Sbjct: 425 EEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLT------SKGLPDLVTFHI-LM 477

Query: 253 KGCDGIYETVNS---LKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGF 309
           +G     E+  +   LK M + G  P    + +  +      NL+ A  +   M      
Sbjct: 478 EGYCRKGESRKAAMLLKEMSKMGLKPRHLTYNIVMKGYCKEGNLKAATNMRTQMEKERRL 537

Query: 310 RPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASG 369
           R +   YN+++  Y    +   A  LL+EM+  G  P+  TY I+ E +V    + +  G
Sbjct: 538 RMNVASYNVLLQGYSQKGKLEDANMLLNEMLEKGLVPNRITYEIVKEEMVDQGFVPDIEG 597

Query: 370 -LFNEMVKN 377
            LFN   K+
Sbjct: 598 HLFNVSTKS 606



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/158 (22%), Positives = 76/158 (48%), Gaps = 4/158 (2%)

Query: 296 AEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILF 355
            E+++  M+ R   +P+   +N++I+  C + +   A  ++++M   G  P++ +YN L 
Sbjct: 207 VEYVYKEMIRR-KIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLI 265

Query: 356 EFLVK---GRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIEN 412
           +   K     K+++A  +  EMV+N+   N       +  +   D+   ++K +K M++ 
Sbjct: 266 DGYCKLGGNGKMYKADAVLKEMVENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQ 325

Query: 413 HCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQ 450
                  + N L+ GLC+   + EA+     M   G+Q
Sbjct: 326 DVKPNVISYNSLINGLCNGGKISEAISMRDKMVSAGVQ 363


>gi|224133106|ref|XP_002327962.1| predicted protein [Populus trichocarpa]
 gi|222837371|gb|EEE75750.1| predicted protein [Populus trichocarpa]
          Length = 487

 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 84/318 (26%), Positives = 141/318 (44%), Gaps = 9/318 (2%)

Query: 136 ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRV 195
            TF+S+ +     D+   A+  FD M   G + ++   N+++   C+ GKT  A   L+ 
Sbjct: 155 VTFSSLINGLCFEDKFARAMEFFDEMVASGYQPNLHTYNTIIKGFCKIGKTTVAVGLLKK 214

Query: 196 VD---GRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
           +D   GR  PD   Y  +++G  K+R V+ A   F E+  + G  PD V  Y S L+  L
Sbjct: 215 MDKAGGR--PDIVIYNTIIDGLCKDRLVSEALDIFSEIKGK-GVRPD-VFTY-SILMHGL 269

Query: 253 KGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD 312
              D   E       MM     P +  F +  ++      L  A+ I   M+ + G  P+
Sbjct: 270 CNSDQKEEASALFNEMMSLNIMPDVVTFNILVDKLCKEGMLSEAQGIIKIMIEK-GVEPN 328

Query: 313 THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFN 372
              YN +++ YC  N+   A  + D M+  G  P++ +YNIL     K +++ EA  LF+
Sbjct: 329 YATYNSLMNGYCLQNKVFEARMVFDAMITKGCMPNVVSYNILINGYCKAQRIDEARELFD 388

Query: 373 EMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMH 432
           EM     + N  N    +     +     A + +K M    CS    T  +L+  LC + 
Sbjct: 389 EMSFRGLIPNTFNYNTLISGLCQAGRHCEARELFKDMQAQGCSPDLVTCTILLDSLCKLG 448

Query: 433 MLPEAVKYAKGMAEKGIQ 450
            L  A++  + M +  ++
Sbjct: 449 YLDNALRLFRAMQDSCLK 466



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 91/369 (24%), Positives = 162/369 (43%), Gaps = 11/369 (2%)

Query: 118 DAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLL 177
           DA++     + K  +  +  F  + S+ V        ++    +E    + DVF  N L+
Sbjct: 67  DALFSFNHMIHKHPLPCIVEFDKLLSALVRIKHYGTVLSLSKRIELLRIERDVFHFNILI 126

Query: 178 SAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGW 236
           +   R  +   A+  L +++    +PD  T++ L+ G   E   A A + F EMV   G+
Sbjct: 127 NCFSRLQRVDFAFSVLGKIIKLGFEPDAVTFSSLINGLCFEDKFARAMEFFDEMVAS-GY 185

Query: 237 DPDNVPAYDSYLITLLKGCDGIYET---VNSLKRMMERGCNPGMTFFKLAFEECLTGQNL 293
            P N+  Y+    T++KG   I +T   V  LK+M + G  P +  +    +     + +
Sbjct: 186 QP-NLHTYN----TIIKGFCKIGKTTVAVGLLKKMDKAGGRPDIVIYNTIIDGLCKDRLV 240

Query: 294 RGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNI 353
             A  I+  + G+ G RPD   Y++++   C S++   A  L +EM+     PD+ T+NI
Sbjct: 241 SEALDIFSEIKGK-GVRPDVFTYSILMHGLCNSDQKEEASALFNEMMSLNIMPDVVTFNI 299

Query: 354 LFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENH 413
           L + L K   L EA G+   M++     N+    + +  Y   +  + A   +  MI   
Sbjct: 300 LVDKLCKEGMLSEAQGIIKIMIEKGVEPNYATYNSLMNGYCLQNKVFEARMVFDAMITKG 359

Query: 414 CSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYE 473
           C     + N+L+ G C    + EA +    M+ +G+    F  + L   L +A +     
Sbjct: 360 CMPNVVSYNILINGYCKAQRIDEARELFDEMSFRGLIPNTFNYNTLISGLCQAGRHCEAR 419

Query: 474 ELLKKCKAH 482
           EL K  +A 
Sbjct: 420 ELFKDMQAQ 428



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 66/275 (24%), Positives = 108/275 (39%), Gaps = 36/275 (13%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           +L T+ ++   +    +   A+     M++ G + D+   N+++  +C+D    +A    
Sbjct: 188 NLHTYNTIIKGFCKIGKTTVAVGLLKKMDKAGGRPDIVIYNTIIDGLCKDRLVSEALDIF 247

Query: 194 RVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVP---------- 242
             + G+ ++PD  TY+IL+ G         A   F EM + +   PD V           
Sbjct: 248 SEIKGKGVRPDVFTYSILMHGLCNSDQKEEASALFNEM-MSLNIMPDVVTFNILVDKLCK 306

Query: 243 ------AYDSYLITLLKGCDGIYETVNSLKR-----------------MMERGCNPGMTF 279
                 A     I + KG +  Y T NSL                   M+ +GC P +  
Sbjct: 307 EGMLSEAQGIIKIMIEKGVEPNYATYNSLMNGYCLQNKVFEARMVFDAMITKGCMPNVVS 366

Query: 280 FKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEM 339
           + +        Q +  A  ++  M  R G  P+T  YN +IS  C +     A +L  +M
Sbjct: 367 YNILINGYCKAQRIDEARELFDEMSFR-GLIPNTFNYNTLISGLCQAGRHCEARELFKDM 425

Query: 340 VYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
              G  PD+ T  IL + L K   L  A  LF  M
Sbjct: 426 QAQGCSPDLVTCTILLDSLCKLGYLDNALRLFRAM 460



 Score = 42.4 bits (98), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 56/116 (48%), Gaps = 7/116 (6%)

Query: 116 LFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNS 175
           +FDAM      + K  + ++ ++  + + Y  A R+ +A   FD M   G   + F  N+
Sbjct: 351 VFDAM------ITKGCMPNVVSYNILINGYCKAQRIDEARELFDEMSFRGLIPNTFNYNT 404

Query: 176 LLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEM 230
           L+S +C+ G+  +A +  + +  +   PD  T  ILL+   K   + NA + F  M
Sbjct: 405 LISGLCQAGRHCEARELFKDMQAQGCSPDLVTCTILLDSLCKLGYLDNALRLFRAM 460


>gi|357508583|ref|XP_003624580.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499595|gb|AES80798.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 585

 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 100/442 (22%), Positives = 176/442 (39%), Gaps = 14/442 (3%)

Query: 29  HLDVPNLPPTIKTLCEIIANTPSP--TVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVK 86
           HL        +KT+ +II    S    ++  L+   ++ S E V +VL    +    A  
Sbjct: 91  HLRDDGFVKDVKTILDIIHKPGSGPYEIKQKLEDCNVKASSELVVEVLSRVRNDWEAAFT 150

Query: 87  FFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKK----ENVLSLATFASVF 142
           FF W+  Q    HS   ++ ++ +LGK   FD  W  ++ M++    E++++  T   + 
Sbjct: 151 FFLWAGKQPGYDHSVREYHSMISVLGKMRRFDTAWALVEEMRRGKTGESIVTPQTLLIMI 210

Query: 143 SSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKP 202
             Y     V  AI TF   +++  +  ++    LLSA+CR     DA   L         
Sbjct: 211 RKYCAVHDVGRAINTFYAFKRFNFQVGLYEFQGLLSALCRYKNVQDAEHLLFCNKNVFPL 270

Query: 203 DNDTYAILLEGW-EKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYET 261
           D  ++ I+L GW        NA++ + EM         +V +Y S +I+       +Y  
Sbjct: 271 DTKSFNIILNGWCNLIVSARNAERIWEEM--SKRRIQHDVVSYAS-IISCYSKSSKLYRV 327

Query: 262 VNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMIS 321
           +   ++M +R   P    +          + ++ A  +   M       PD   YN +I 
Sbjct: 328 LQLFEQMKKRNITPDRKVYNAVIFSLAKNRMVKEAVNLIIKMEDN-NVTPDAITYNSLIK 386

Query: 322 LYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVL 381
             C + +   A ++ + M+  G  P I+T++  F  L    +++E      E+  N  + 
Sbjct: 387 PLCKARKIDEAKEIFNVMLERGISPSIRTFHAFFRILRVKEEVFELLDKMKELGCNPTI- 445

Query: 382 NHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYA 441
             E     +R +          + W  M E+       +  +L+ GL     + EA KY 
Sbjct: 446 --ETYIMLIRKFCRWRQLDEVKRIWNAMREDGIGHDRSSYIVLIHGLFLNCKVEEAYKYY 503

Query: 442 KGMAEKGIQVTPFALSKLKQIL 463
             M EKG    P   S L+  L
Sbjct: 504 IEMQEKGFLPEPKTESMLQAWL 525


>gi|79369396|ref|NP_176481.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806495|sp|Q9LQ14.2|PPR96_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62930, chloroplastic; Flags: Precursor
 gi|332195902|gb|AEE34023.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 629

 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 76/304 (25%), Positives = 139/304 (45%), Gaps = 5/304 (1%)

Query: 136 ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRV 195
            TF ++     + ++  +A+   D M   GC+ D+F   ++++ +C+ G    A   L+ 
Sbjct: 186 VTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKK 245

Query: 196 VD-GRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG 254
           ++ G+I+ D   Y  +++     ++V +A   F EM  + G  P NV  Y+S LI  L  
Sbjct: 246 MEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNK-GIRP-NVVTYNS-LIRCLCN 302

Query: 255 CDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTH 314
                +    L  M+ER  NP +  F    +  +    L  AE ++  M+ R    PD  
Sbjct: 303 YGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKR-SIDPDIF 361

Query: 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
            Y+ +I+ +C  +    A  + + M+    FP++ TYN L +   K +++ E   LF EM
Sbjct: 362 TYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREM 421

Query: 375 VKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHML 434
            +   V N       ++    + D  +A K +K M+ +       T ++L+ GLC    L
Sbjct: 422 SQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKL 481

Query: 435 PEAV 438
            +A+
Sbjct: 482 EKAL 485



 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 75/298 (25%), Positives = 139/298 (46%), Gaps = 14/298 (4%)

Query: 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLS-LATFASVFSSYVVADRVKDAITTFDV 160
           + +  VV+ L K    D     +K M+K  + + +  + ++  +      V DA+  F  
Sbjct: 221 FTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTE 280

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYAILLEGWEKERD 219
           M+  G + +V   NSL+  +C  G+  DA + L  +++ +I P+  T++ L++ + KE  
Sbjct: 281 MDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGK 340

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTF 279
           +  A+K + EM I+   DPD +  Y S LI      D + E  +  + M+ + C P +  
Sbjct: 341 LVEAEKLYDEM-IKRSIDPD-IFTYSS-LINGFCMHDRLDEAKHMFELMISKDCFPNVVT 397

Query: 280 FKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEM 339
           +    +     + +     ++  M  R G   +T  YN +I     + +   A K+  +M
Sbjct: 398 YNTLIKGFCKAKRVEEGMELFREMSQR-GLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKM 456

Query: 340 VYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNE--------NVLNHENCRAA 389
           V +G  PDI TY+IL + L K  KL +A  +F  + K++        N++    C+A 
Sbjct: 457 VSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAG 514



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 93/433 (21%), Positives = 168/433 (38%), Gaps = 57/433 (13%)

Query: 87  FFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSY 145
           +F  ++Y   +K S    N+++DL       D   D    M +   L S+  F  + S+ 
Sbjct: 39  YFSAASYDYREKLS---RNVLLDLK-----LDDAVDLFGEMVQSRPLPSIVEFNKLLSAI 90

Query: 146 VVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDN 204
              ++    I+  + M+     +D+++ N L++  CR  +   A   L +++    +PD 
Sbjct: 91  AKMNKFDLVISLGERMQNLRISYDLYSYNILINCFCRRSQLPLALAVLGKMMKLGYEPDI 150

Query: 205 DTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC---DGIYET 261
            T + LL G+   + ++ A     +M + + + P+ V        TL+ G    +   E 
Sbjct: 151 VTLSSLLNGYCHGKRISEAVALVDQMFV-MEYQPNTVT-----FNTLIHGLFLHNKASEA 204

Query: 262 VNSLKRMMERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMI 320
           V  + RM+ RGC P + T+  +    C  G        +     G+I    D  +Y  +I
Sbjct: 205 VALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKI--EADVVIYTTII 262

Query: 321 SLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFL---------------------- 358
              C       A+ L  EM   G  P++ TYN L   L                      
Sbjct: 263 DALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKIN 322

Query: 359 -------------VKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKF 405
                        VK  KL EA  L++EM+K     +     + +  +   D    A   
Sbjct: 323 PNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHM 382

Query: 406 WKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIK 465
           ++ MI   C     T N L+ G C    + E ++  + M+++G+       + L Q L +
Sbjct: 383 FELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQ 442

Query: 466 ARKEAVYEELLKK 478
           A    + +++ KK
Sbjct: 443 AGDCDMAQKIFKK 455



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 62/282 (21%), Positives = 118/282 (41%), Gaps = 15/282 (5%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-F 192
           ++ TF+++  ++V   ++ +A   +D M +     D+F  +SL++  C   +  +A   F
Sbjct: 324 NVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMF 383

Query: 193 LRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIE--VGWDPDNVPAYDSYLIT 250
             ++     P+  TY  L++G+ K + V    + F EM     VG    N   Y++ +  
Sbjct: 384 ELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVG----NTVTYNTLIQG 439

Query: 251 LLKG--CDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIG 308
           L +   CD   +     K+M+  G  P +  + +  +       L  A  ++   + +  
Sbjct: 440 LFQAGDCDMAQKI---FKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVF-EYLQKSK 495

Query: 309 FRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFE-FLVKGRKLWEA 367
             PD + YN+MI   C + +      L   +   G  P++  Y  +   F  KG K  EA
Sbjct: 496 MEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLK-EEA 554

Query: 368 SGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYM 409
             LF EM ++  + N       +R  +   D   + +  K M
Sbjct: 555 DALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASAELIKEM 596


>gi|30840327|emb|CAD61286.1| fertility restorer homologue [Raphanus sativus]
 gi|134302843|gb|ABO70665.1| restorer-of-fertility [Raphanus sativus]
 gi|157931526|gb|ABW04887.1| PPR [Raphanus sativus]
 gi|194295008|gb|ABO70666.2| restorer-of-fertility [Raphanus sativus]
          Length = 687

 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 78/316 (24%), Positives = 131/316 (41%), Gaps = 39/316 (12%)

Query: 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL- 193
           + TF ++     V DRV +A+  F  M +  C+ +V    +L++ +CR+G+ ++A   L 
Sbjct: 149 VVTFNTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLD 208

Query: 194 RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLK 253
           R+++  ++P   TY  +++G  K+ D  +A     +M  EV     NV  Y + + +L K
Sbjct: 209 RMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKME-EVSHIIPNVVIYSAIIDSLCK 267

Query: 254 GCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDT 313
             DG +    +L   M+                                     G  PD 
Sbjct: 268 --DGRHSDAQNLFTEMQEK-----------------------------------GIFPDL 290

Query: 314 HMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNE 373
             YN MI  +C S     A +LL EM+     PD+ TYN L    VK  K +EA  L++E
Sbjct: 291 FTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDE 350

Query: 374 MVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHM 433
           M+    + N     + +  +   +    A   +  M    CS    T N L+ G C    
Sbjct: 351 MLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKR 410

Query: 434 LPEAVKYAKGMAEKGI 449
           + + ++    M E G+
Sbjct: 411 IDDGMELLHEMTETGL 426



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 82/318 (25%), Positives = 142/318 (44%), Gaps = 31/318 (9%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           ++  ++++  S     R  DA   F  M++ G   D+F  NS++   C  G+  DA Q L
Sbjct: 254 NVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLL 313

Query: 194 R-VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
           + +++ +I PD  TY  L+  + KE     A++ + EM+   G  P+ +  Y S +    
Sbjct: 314 QEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPR-GIIPNTI-TYSSMIDGFC 371

Query: 253 KGCDGIYETVNSLKRMMERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRP 311
           K  + +    +    M  +GC+P + TF  L    C   +   G E +    +   G   
Sbjct: 372 KQ-NRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHE--MTETGLVA 428

Query: 312 DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLF 371
           DT  YN +I  +    +  AA+ LL EM+ +G  PDI T + L + L    KL +A  +F
Sbjct: 429 DTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMF 488

Query: 372 NEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDM 431
             M K++  L             D+  P+  ++           D+ +T N+L++GL + 
Sbjct: 489 KVMQKSKKDL-------------DASHPFNGVE----------PDV-QTYNILISGLINE 524

Query: 432 HMLPEAVKYAKGMAEKGI 449
               EA +  + M  +GI
Sbjct: 525 GKFLEAEELYEEMPHRGI 542



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 62/240 (25%), Positives = 101/240 (42%), Gaps = 31/240 (12%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RV 195
           T++S+   +   +R+  A   F +M   GC  ++   N+L+   C   +  D  + L  +
Sbjct: 362 TYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEM 421

Query: 196 VDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG- 254
            +  +  D  TY  L+ G+    D+  A     EM I  G  PD V        TLL G 
Sbjct: 422 TETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEM-ISSGLCPDIVTCD-----TLLDGL 475

Query: 255 CDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTH 314
           CD        LK  +E         FK+  +   + ++L  +    G         PD  
Sbjct: 476 CDN-----GKLKDALE--------MFKVMQK---SKKDLDASHPFNGV-------EPDVQ 512

Query: 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
            YN++IS      +   A +L +EM + G  PD  TY+ + + L K  +L EA+ +F+ M
Sbjct: 513 TYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSM 572



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 57/256 (22%), Positives = 99/256 (38%), Gaps = 18/256 (7%)

Query: 132 VLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ 191
           V    T+ ++   + +   +  A+     M   G   D+   ++LL  +C +GK  DA +
Sbjct: 427 VADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALE 486

Query: 192 FLRVVD------------GRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPD 239
             +V+               ++PD  TY IL+ G   E     A++ + EM    G  PD
Sbjct: 487 MFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMP-HRGIVPD 545

Query: 240 NVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGM-TFFKLAFEECLTGQNLRGAEF 298
            +  Y S +  L K    + E       M  +  +P + TF  L    C  G+   G E 
Sbjct: 546 TI-TYSSMIDGLCKQ-SRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLEL 603

Query: 299 IWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFL 358
                +GR G   +   Y  +I  +        A+ +  EM+ +G +PD  T   +   L
Sbjct: 604 F--CEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGL 661

Query: 359 VKGRKLWEASGLFNEM 374
               +L  A  +  ++
Sbjct: 662 WSKEELKRAVAMLEKL 677


>gi|255572227|ref|XP_002527053.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533615|gb|EEF35353.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 677

 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 78/328 (23%), Positives = 144/328 (43%), Gaps = 18/328 (5%)

Query: 118 DAMWDAIKSMKKENV-LSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSL 176
           D  W+    + +  + L++ T   + ++     ++ D       MEQ G   D+   N+L
Sbjct: 167 DLAWEVYNEIARSGIELNVYTLNIMVNALCKDHKIDDVKPFLIDMEQKGIFADIVTYNTL 226

Query: 177 LSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVG 235
           ++A CR+G   +A++ +  + G+ +KP   TY  ++ G  K+     AK  F EM + +G
Sbjct: 227 INAYCREGLLGEAFEVMNSMSGKGLKPTLFTYNAVINGLCKKGRYVRAKGVFNEM-LSIG 285

Query: 236 WDPDNVPAYDSYLITLLKGC--DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNL 293
             PD      +Y   L++ C  +   E  +    M+ RG +P +  F       L G + 
Sbjct: 286 LSPDTT----TYNTLLVESCRNNNFLEAKDIFSDMLHRGVSPDLISF-----SSLIGVSS 336

Query: 294 RGAEFIWGAMVGR----IGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQ 349
           R        M  R     G  PD  +Y ++I+ YC +     A+++ D+M+  G   D+ 
Sbjct: 337 RNGHLDQALMYFRDMKTSGLVPDNVIYTILINGYCRNGMMSEALEIRDKMLEQGCALDVV 396

Query: 350 TYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYM 409
            YN +   L K + L +A+ LF+EMV+   V +       +  +    +   A+  +  M
Sbjct: 397 AYNTILNGLCKKKLLADANALFDEMVERGVVPDFCTFTTLIHGHCKEGNMGKALSLFGIM 456

Query: 410 IENHCSDLSETGNLLVAGLCDMHMLPEA 437
            + +      T N+L+ G C    + +A
Sbjct: 457 TQKNIKPDIVTYNILIDGFCKTTEMEKA 484



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 86/383 (22%), Positives = 155/383 (40%), Gaps = 37/383 (9%)

Query: 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLS-LATFASVFSSYVVADRVKDAITTFDV 160
           Y  N++V+ L K+   D +   +  M+++ + + + T+ ++ ++Y     + +A    + 
Sbjct: 186 YTLNIMVNALCKDHKIDDVKPFLIDMEQKGIFADIVTYNTLINAYCREGLLGEAFEVMNS 245

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDA-WQFLRVVDGRIKPDNDTYAILLEGWEKERD 219
           M   G K  +F  N++++ +C+ G+ + A   F  ++   + PD  TY  LL    +  +
Sbjct: 246 MSGKGLKPTLFTYNAVINGLCKKGRYVRAKGVFNEMLSIGLSPDTTTYNTLLVESCRNNN 305

Query: 220 VANAKKTFGEMVIEVGWDPDN-------------------------------VPAYDSYL 248
              AK  F +M +  G  PD                                VP    Y 
Sbjct: 306 FLEAKDIFSDM-LHRGVSPDLISFSSLIGVSSRNGHLDQALMYFRDMKTSGLVPDNVIYT 364

Query: 249 ITLLKGCDG--IYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGR 306
           I +   C    + E +    +M+E+GC   +  +          + L  A  ++  MV R
Sbjct: 365 ILINGYCRNGMMSEALEIRDKMLEQGCALDVVAYNTILNGLCKKKLLADANALFDEMVER 424

Query: 307 IGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWE 366
            G  PD   +  +I  +C     G A+ L   M      PDI TYNIL +   K  ++ +
Sbjct: 425 -GVVPDFCTFTTLIHGHCKEGNMGKALSLFGIMTQKNIKPDIVTYNILIDGFCKTTEMEK 483

Query: 367 ASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVA 426
           A+ L+NEM+  +   NH +    V  Y +      A + W  MI         T N ++ 
Sbjct: 484 ANELWNEMISRKIFPNHISYAILVNGYCNLGFVSEAFRLWDEMIRKGIKPTLVTCNTVIK 543

Query: 427 GLCDMHMLPEAVKYAKGMAEKGI 449
           G C    L +A ++   M  +G+
Sbjct: 544 GYCRSGDLSKADEFLGKMISEGV 566



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 83/321 (25%), Positives = 130/321 (40%), Gaps = 23/321 (7%)

Query: 138 FASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDA-WQFLRVV 196
           +  + + Y     + +A+   D M + GC  DV A N++L+ +C+     DA   F  +V
Sbjct: 363 YTILINGYCRNGMMSEALEIRDKMLEQGCALDVVAYNTILNGLCKKKLLADANALFDEMV 422

Query: 197 DGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD 256
           +  + PD  T+  L+ G  KE ++  A   FG M  +    PD +  Y+  +    K  +
Sbjct: 423 ERGVVPDFCTFTTLIHGHCKEGNMGKALSLFGIMT-QKNIKPD-IVTYNILIDGFCKTTE 480

Query: 257 GIYETVNSL-KRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHM 315
              E  N L   M+ R   P    + +          +  A  +W  M+ R G +P    
Sbjct: 481 --MEKANELWNEMISRKIFPNHISYAILVNGYCNLGFVSEAFRLWDEMI-RKGIKPTLVT 537

Query: 316 YNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM- 374
            N +I  YC S +   A + L +M+  G  PD  TYN L    VKG  + +A  L N+M 
Sbjct: 538 CNTVIKGYCRSGDLSKADEFLGKMISEGVGPDSITYNTLINGFVKGEYMDKAFFLINKME 597

Query: 375 -------VKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAG 427
                  V   NV+ +  CR      M       A    + MIE        T   L+ G
Sbjct: 598 TKGLQPDVVTYNVILNGFCRQG---RMQE-----AELILRKMIERGIDPDRSTYTTLING 649

Query: 428 LCDMHMLPEAVKYAKGMAEKG 448
                 L EA ++   M ++G
Sbjct: 650 YVSQDNLKEAFRFHDEMLQRG 670



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 86/335 (25%), Positives = 134/335 (40%), Gaps = 44/335 (13%)

Query: 153 DAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYAILL 211
           +A   F  M   G   D+ + +SL+    R+G    A  + R +    + PDN  Y IL+
Sbjct: 308 EAKDIFSDMLHRGVSPDLISFSSLIGVSSRNGHLDQALMYFRDMKTSGLVPDNVIYTILI 367

Query: 212 EGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSL-KRMME 270
            G+ +   ++ A +   +M +E G   D V AY++ L  L K    +    N+L   M+E
Sbjct: 368 NGYCRNGMMSEALEIRDKM-LEQGCALD-VVAYNTILNGLCK--KKLLADANALFDEMVE 423

Query: 271 RGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNET 329
           RG  P   TF  L    C  G N+  A  ++G M  +   +PD   YN++I  +C + E 
Sbjct: 424 RGVVPDFCTFTTLIHGHCKEG-NMGKALSLFGIMTQK-NIKPDIVTYNILIDGFCKTTEM 481

Query: 330 GAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAA 389
             A +L +EM+    FP+  +Y IL         + EA  L++EM++         C   
Sbjct: 482 EKANELWNEMISRKIFPNHISYAILVNGYCNLGFVSEAFRLWDEMIRKGIKPTLVTCNTV 541

Query: 390 VRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLV------------------------ 425
           ++ Y  S D   A +F   MI       S T N L+                        
Sbjct: 542 IKGYCRSGDLSKADEFLGKMISEGVGPDSITYNTLINGFVKGEYMDKAFFLINKMETKGL 601

Query: 426 -----------AGLCDMHMLPEAVKYAKGMAEKGI 449
                       G C    + EA    + M E+GI
Sbjct: 602 QPDVVTYNVILNGFCRQGRMQEAELILRKMIERGI 636



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 72/317 (22%), Positives = 140/317 (44%), Gaps = 11/317 (3%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRV 195
            F  +  SYV A ++ +   TF ++ + G    + A NSLL  + + G    AW+ +  +
Sbjct: 117 VFDLLIRSYVQARKLNEGTDTFKILRRKGFLVSINACNSLLGGLVKMGWVDLAWEVYNEI 176

Query: 196 VDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLK-G 254
               I+ +  T  I++    K+  + + K    +M  E      ++  Y++ +    + G
Sbjct: 177 ARSGIELNVYTLNIMVNALCKDHKIDDVKPFLIDM--EQKGIFADIVTYNTLINAYCREG 234

Query: 255 CDG-IYETVNSLKRMMERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD 312
             G  +E +NS   M  +G  P + T+  +    C  G+ +R A+ ++  M+  IG  PD
Sbjct: 235 LLGEAFEVMNS---MSGKGLKPTLFTYNAVINGLCKKGRYVR-AKGVFNEMLS-IGLSPD 289

Query: 313 THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFN 372
           T  YN ++   C +N    A  +  +M++ G  PD+ +++ L     +   L +A   F 
Sbjct: 290 TTTYNTLLVESCRNNNFLEAKDIFSDMLHRGVSPDLISFSSLIGVSSRNGHLDQALMYFR 349

Query: 373 EMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMH 432
           +M  +  V ++      +  Y  +     A++    M+E  C+      N ++ GLC   
Sbjct: 350 DMKTSGLVPDNVIYTILINGYCRNGMMSEALEIRDKMLEQGCALDVVAYNTILNGLCKKK 409

Query: 433 MLPEAVKYAKGMAEKGI 449
           +L +A      M E+G+
Sbjct: 410 LLADANALFDEMVERGV 426



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 64/292 (21%), Positives = 118/292 (40%), Gaps = 61/292 (20%)

Query: 103 AWNLVVDLLGK-------NCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAI 155
           A+N +++ L K       N LFD M      +++  V    TF ++   +     +  A+
Sbjct: 397 AYNTILNGLCKKKLLADANALFDEM------VERGVVPDFCTFTTLIHGHCKEGNMGKAL 450

Query: 156 TTFDVMEQYGCKHDVFALNSLLSAICRDG---KTIDAWQFLRVVDGRIKPDNDTYAIL-- 210
           + F +M Q   K D+   N L+   C+     K  + W    ++  +I P++ +YAIL  
Sbjct: 451 SLFGIMTQKNIKPDIVTYNILIDGFCKTTEMEKANELWN--EMISRKIFPNHISYAILVN 508

Query: 211 ---------------------------------LEGWEKERDVANAKKTFGEMVIEVGWD 237
                                            ++G+ +  D++ A +  G+M+ E G  
Sbjct: 509 GYCNLGFVSEAFRLWDEMIRKGIKPTLVTCNTVIKGYCRSGDLSKADEFLGKMISE-GVG 567

Query: 238 PDNVPAYDSYLITLLKG--CDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRG 295
           PD++  Y++ +   +KG   D  +  +N   +M  +G  P +  + +          ++ 
Sbjct: 568 PDSI-TYNTLINGFVKGEYMDKAFFLIN---KMETKGLQPDVVTYNVILNGFCRQGRMQE 623

Query: 296 AEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPD 347
           AE I   M+ R G  PD   Y  +I+ Y   +    A +  DEM+  G  PD
Sbjct: 624 AELILRKMIER-GIDPDRSTYTTLINGYVSQDNLKEAFRFHDEMLQRGFVPD 674


>gi|46091165|dbj|BAD13711.1| PPR protein [Oryza sativa Indica Group]
          Length = 794

 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 94/379 (24%), Positives = 157/379 (41%), Gaps = 21/379 (5%)

Query: 81  PGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCL-------FDAMWDAIKSMKKENVL 133
           P  AV  +   A    D+ +P      + L+G  C        F A+ + IK   K  ++
Sbjct: 69  PAAAVSRYNRMARAGADEVTPNLCTYGI-LMGSCCCAGRLDLGFAALGNVIK---KGFIV 124

Query: 134 SLATFASVFSSYVVADRVKDAI-TTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQF 192
               F  +        R  DA+      M Q GC  +VF+ N LL  +C D ++ +A + 
Sbjct: 125 DAIAFTPMLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDDNRSQEALEL 184

Query: 193 LRVV---DGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLI 249
           L+++    G   PD  +Y  ++ G+ KE D+  A  T+ EM ++ G  P NV  Y S + 
Sbjct: 185 LQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEM-LDRGILP-NVVTYSSIIA 242

Query: 250 TLLKGCDGIYETVNSLKRMMERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIG 308
            L K    + + +  L  M++ G  P   T+  +    C +GQ      F+    +   G
Sbjct: 243 ALCKA-QAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFL--KKMHSDG 299

Query: 309 FRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEAS 368
             PD   YN ++   C +     A K+ D M   G  P+I TY  L +       L E  
Sbjct: 300 VEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMH 359

Query: 369 GLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGL 428
           GL + MV+N    NH      +  Y        A+  +  M +   +  + T   ++  L
Sbjct: 360 GLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGIL 419

Query: 429 CDMHMLPEAVKYAKGMAEK 447
           C    + +A++Y + M ++
Sbjct: 420 CKSGRVEDAMRYFEQMIDE 438



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 97/421 (23%), Positives = 180/421 (42%), Gaps = 33/421 (7%)

Query: 77  SYSHPGPAVKFFRWSAYQLNDKHSP--YAWNLVVDLLGKN--C-----LFDAMWDAIKSM 127
           S   P  A+ F +      +D   P    +N ++D L KN  C     +FD+M    + +
Sbjct: 281 SSGQPKEAIGFLKKMH---SDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTK--RGL 335

Query: 128 KKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTI 187
           K E    + T+ ++   Y     + +     D+M + G   + +  + L+ A  + GK  
Sbjct: 336 KPE----ITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVD 391

Query: 188 DAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDS 246
            A   F ++    + PD  TY  ++    K   V +A + F +M+ E    P N+  Y+S
Sbjct: 392 QAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDER-LSPGNI-VYNS 449

Query: 247 YLITLLKGCDGIYETVNSLKR----MMERG-CNPGMTFFKLAFEECLTGQNLRGAEFIWG 301
            + +L      I++  +  K     M++RG C   + F  +    C  G+ +  +E ++ 
Sbjct: 450 LIHSLC-----IFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIE-SEKLFD 503

Query: 302 AMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKG 361
            MV RIG +PD   Y+ +I  YC + +   A KLL  MV  G  PD  TYN L     K 
Sbjct: 504 LMV-RIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKI 562

Query: 362 RKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETG 421
            ++ +A  LF EM  +    +       ++    +     A + +  + E+       T 
Sbjct: 563 SRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTY 622

Query: 422 NLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKCKA 481
           N+++ GLC  ++  EA++  + +    +Q+     + +   L+K  +    ++L     A
Sbjct: 623 NIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSA 682

Query: 482 H 482
           +
Sbjct: 683 N 683



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 87/351 (24%), Positives = 148/351 (42%), Gaps = 26/351 (7%)

Query: 88  FRWSAYQLNDKHSPYAWNLVVD-LLGKNCLFDAMWDAIKSMKKENV-----LSLATFASV 141
            R+    ++++ SP   N+V + L+   C+FD  WD  K +  E +     L    F S+
Sbjct: 429 MRYFEQMIDERLSP--GNIVYNSLIHSLCIFDK-WDKAKELILEMLDRGICLDTIFFNSI 485

Query: 142 FSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRI 200
             S+    RV ++   FD+M + G K D+   ++L+   C  GK  +A + L  +V   +
Sbjct: 486 IDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGM 545

Query: 201 KPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYE 260
           KPD  TY  L+ G+ K   + +A   F EM    G  PD +    +Y I L     G+++
Sbjct: 546 KPDCVTYNTLINGYCKISRMEDALVLFREME-SSGVSPDII----TYNIIL----QGLFQ 596

Query: 261 TVNSLKR------MMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTH 314
           T  +         + E G    ++ + +     L   NL          +     + +T 
Sbjct: 597 TRRTAAAKELYVGITESGTQLELSTYNIILHG-LCKNNLTDEALRMFQNLCLTDLQLETR 655

Query: 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
            +N+MI           A  L   +  NG  PD++TY+++ E L++   L E   LF  M
Sbjct: 656 TFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSM 715

Query: 375 VKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLV 425
            +N    N     + VR  +   D   A  +   + E H S  + T +L +
Sbjct: 716 EENGCTANSRMLNSIVRKLLQRGDITRAGTYLFMIDEKHFSLEASTASLFL 766



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 71/307 (23%), Positives = 120/307 (39%), Gaps = 14/307 (4%)

Query: 152 KDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDG---RIKPDNDTYA 208
           +DA   FD + + G    ++ LN  L+ + R        ++ R+       + P+  TY 
Sbjct: 36  EDARHVFDELLRRGRGASIYGLNCALADVARHSPAAAVSRYNRMARAGADEVTPNLCTYG 95

Query: 209 ILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNS---- 264
           IL+        +       G  VI+ G+  D +         +LKG      T ++    
Sbjct: 96  ILMGSCCCAGRLDLGFAALGN-VIKKGFIVDAIA-----FTPMLKGLCADKRTSDAMDIV 149

Query: 265 LKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIG-FRPDTHMYNMMISLY 323
           L+RM + GC P +  + +  +        + A  +   M    G   PD   Y  +I+ +
Sbjct: 150 LRRMTQLGCIPNVFSYNILLKGLCDDNRSQEALELLQMMPDDGGDCPPDVVSYTTVINGF 209

Query: 324 CYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNH 383
               +   A     EM+  G  P++ TY+ +   L K + + +A  +   MVKN  + N 
Sbjct: 210 FKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNC 269

Query: 384 ENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKG 443
               + V  Y  S  P  AI F K M  +       T N L+  LC      EA K    
Sbjct: 270 RTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDS 329

Query: 444 MAEKGIQ 450
           M ++G++
Sbjct: 330 MTKRGLK 336


>gi|297807691|ref|XP_002871729.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317566|gb|EFH47988.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 504

 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 91/369 (24%), Positives = 160/369 (43%), Gaps = 19/369 (5%)

Query: 117 FDAMWDAIKSMKKENVL--------------SLATFASVFSSYVVADRVKDAITTFDVME 162
           F  +  AI  MKK +V+              +L T   + + +    ++  A++    M 
Sbjct: 84  FSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNILLNCFCRCSQLSLALSFLGKMM 143

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDA-WQFLRVVDGRIKPDNDTYAILLEGWEKERDVA 221
           + G + D+    SLL+  CR  +  DA + F R+V+   +P+   Y  +++G  K + V 
Sbjct: 144 KLGHEPDIVTFGSLLNGFCRGDRIYDALYMFDRMVEMGYEPNVVIYNTIIDGLCKSKQVD 203

Query: 222 NAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFK 281
           NA      M ++ G  PD V  Y+S LI+ L       +    +  M +R   P +  F 
Sbjct: 204 NALDLLNRMEVD-GIRPDAV-TYNS-LISGLCNSGRWDDATRMVSCMTKREIYPDVFTFN 260

Query: 282 LAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVY 341
              + C+    +  AE ++  M+ R    PD   Y+++I   C  +    A ++   MV 
Sbjct: 261 ALIDACVKEGRISEAEELYEEMIRR-SLDPDIVTYSLLIYGLCMYSRLDEAEQMFGFMVS 319

Query: 342 NGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYV 401
            G FPD+ TY+IL     K +K+     LF EM +   V N       ++ Y  +    V
Sbjct: 320 KGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTVLIQGYCRAGKLNV 379

Query: 402 AIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQ 461
           A + +K+M+         T N+L+ GLCD   + +A+     M + G+       + + +
Sbjct: 380 AEEIFKWMVFCGVPPNIITYNVLLHGLCDNGKIEKALVILADMQKSGMDADIVTYNIIIR 439

Query: 462 ILIKARKEA 470
            + KA + A
Sbjct: 440 GMCKAGEVA 448



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 78/347 (22%), Positives = 143/347 (41%), Gaps = 44/347 (12%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           S+A F+ + S+     +    I  ++ M+  G  H++   N LL+  CR  +   A  FL
Sbjct: 80  SIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNILLNCFCRCSQLSLALSFL 139

Query: 194 RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLK 253
                                             G+M +++G +PD +  + S L    +
Sbjct: 140 ----------------------------------GKM-MKLGHEPD-IVTFGSLLNGFCR 163

Query: 254 GCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDT 313
           G D IY+ +    RM+E G  P +  +    +     + +  A  +   M    G RPD 
Sbjct: 164 G-DRIYDALYMFDRMVEMGYEPNVVIYNTIIDGLCKSKQVDNALDLLNRMEVD-GIRPDA 221

Query: 314 HMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNE 373
             YN +IS  C S     A +++  M     +PD+ T+N L +  VK  ++ EA  L+ E
Sbjct: 222 VTYNSLISGLCNSGRWDDATRMVSCMTKREIYPDVFTFNALIDACVKEGRISEAEELYEE 281

Query: 374 MVKNE---NVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCD 430
           M++     +++ +      + +Y   D+   A + + +M+   C     T ++L+ G C 
Sbjct: 282 MIRRSLDPDIVTYSLLIYGLCMYSRLDE---AEQMFGFMVSKGCFPDVVTYSILINGYCK 338

Query: 431 MHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLK 477
              +   +K    M+++G+       + L Q   +A K  V EE+ K
Sbjct: 339 SKKVEHGMKLFCEMSQRGVVRNTVTYTVLIQGYCRAGKLNVAEEIFK 385



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 68/265 (25%), Positives = 122/265 (46%), Gaps = 9/265 (3%)

Query: 116 LFDA--MWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFAL 173
           ++DA  M+D +  M  E   ++  + ++      + +V +A+   + ME  G + D    
Sbjct: 167 IYDALYMFDRMVEMGYEP--NVVIYNTIIDGLCKSKQVDNALDLLNRMEVDGIRPDAVTY 224

Query: 174 NSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVI 232
           NSL+S +C  G+  DA + +  +  R I PD  T+  L++   KE  ++ A++ + EM I
Sbjct: 225 NSLISGLCNSGRWDDATRMVSCMTKREIYPDVFTFNALIDACVKEGRISEAEELYEEM-I 283

Query: 233 EVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQN 292
               DPD V    S LI  L     + E       M+ +GC P +  + +        + 
Sbjct: 284 RRSLDPDIVTY--SLLIYGLCMYSRLDEAEQMFGFMVSKGCFPDVVTYSILINGYCKSKK 341

Query: 293 LRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYN 352
           +     ++  M  R G   +T  Y ++I  YC + +   A ++   MV+ G  P+I TYN
Sbjct: 342 VEHGMKLFCEMSQR-GVVRNTVTYTVLIQGYCRAGKLNVAEEIFKWMVFCGVPPNIITYN 400

Query: 353 ILFEFLVKGRKLWEASGLFNEMVKN 377
           +L   L    K+ +A  +  +M K+
Sbjct: 401 VLLHGLCDNGKIEKALVILADMQKS 425



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 68/270 (25%), Positives = 121/270 (44%), Gaps = 6/270 (2%)

Query: 104 WNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLA-TFASVFSSYVVADRVKDAITTFDVME 162
           +N ++D L K+   D   D +  M+ + +   A T+ S+ S    + R  DA      M 
Sbjct: 189 YNTIIDGLCKSKQVDNALDLLNRMEVDGIRPDAVTYNSLISGLCNSGRWDDATRMVSCMT 248

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDVA 221
           +     DVF  N+L+ A  ++G+  +A + +  ++   + PD  TY++L+ G      + 
Sbjct: 249 KREIYPDVFTFNALIDACVKEGRISEAEELYEEMIRRSLDPDIVTYSLLIYGLCMYSRLD 308

Query: 222 NAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFK 281
            A++ FG MV + G  PD V    S LI        +   +     M +RG       + 
Sbjct: 309 EAEQMFGFMVSK-GCFPDVVTY--SILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYT 365

Query: 282 LAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVY 341
           +  +       L  AE I+  MV   G  P+   YN+++   C + +   A+ +L +M  
Sbjct: 366 VLIQGYCRAGKLNVAEEIFKWMV-FCGVPPNIITYNVLLHGLCDNGKIEKALVILADMQK 424

Query: 342 NGAFPDIQTYNILFEFLVKGRKLWEASGLF 371
           +G   DI TYNI+   + K  ++ +A  L+
Sbjct: 425 SGMDADIVTYNIIIRGMCKAGEVADAWDLY 454


>gi|356570295|ref|XP_003553325.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15010,
           mitochondrial-like [Glycine max]
          Length = 516

 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 101/432 (23%), Positives = 180/432 (41%), Gaps = 26/432 (6%)

Query: 35  LPPTIKTLCEII---ANTPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWS 91
           L   +KT+ +I+    + PS T +  L+   + +S + V +VL  + +    A  FF W+
Sbjct: 28  LSQDVKTILDIMHEMGSGPSQTKQK-LEHCSVDLSAKLVVEVLLRTRNDWEAAFTFFLWA 86

Query: 92  AYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKK----ENVLSLATFASVFSSYVV 147
             Q    HS   ++ ++ +LGK   FD  W+ I+ M++     ++++  T   +   Y  
Sbjct: 87  GKQPGYAHSIREYHSMISILGKMRKFDTAWNLIEEMRRGRTGPSLVTPQTLLIMIRKYCA 146

Query: 148 ADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTY 207
              V  AI TF   +Q+  +  +   +SLLSA+CR     DA   L         D  ++
Sbjct: 147 VHDVARAINTFYAYKQFNFQVGLEEFHSLLSALCRYKNVQDAEHLLFCNKNLFPLDTKSF 206

Query: 208 AILLEGW-EKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLK 266
            I+L GW       ++A++ + EM         +V +Y S +I+       +Y+ +    
Sbjct: 207 NIILNGWCNLIVSTSHAERIWHEMSKRR--IQHDVVSYGS-IISCYSKSSKLYKVLRMFD 263

Query: 267 RMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYS 326
            M +R   P    +         G+ ++ A  + G +       P+   YN +I   C +
Sbjct: 264 EMKKRKITPDRKVYNAVIYALAKGRLVKEAVNLIGTLEDN-DVTPNVVTYNSLIKPLCKA 322

Query: 327 NETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM-----VKNENVL 381
            +   A +L  E++     P IQT++  F  L    +++E      E+     ++   +L
Sbjct: 323 GKVDEAKQLFYEILKRHLSPTIQTFHAFFRILRTKEEVFELLDKMKELGCYPTIETYIML 382

Query: 382 NHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYA 441
             + CR     +   DD +   K W  M E+       +  +L+ GL     L EA  Y 
Sbjct: 383 MRKFCR-----WRQLDDVF---KMWDAMREDGIGHDRSSYIVLIHGLFLNGKLEEAHTYY 434

Query: 442 KGMAEKGIQVTP 453
             M EKG    P
Sbjct: 435 AEMQEKGFLPEP 446


>gi|240256396|ref|NP_199195.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635652|sp|P0C8R0.1|PP416_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g43820
 gi|332007631|gb|AED95014.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 546

 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 111/467 (23%), Positives = 180/467 (38%), Gaps = 76/467 (16%)

Query: 53  TVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLG 112
            ++  L    I +S + V  VL          V FF W+  +        ++++++  LG
Sbjct: 103 AIQKSLSSLGIGLSIDIVADVLNRGNLSGEAMVTFFDWAVREPGVTKDVGSYSVILRALG 162

Query: 113 KNCLFDAMWDAIKSMKKENV-LSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVF 171
           +  LF  M D +K M  E V   L        S+V    V+ AI  F+  E +G K    
Sbjct: 163 RRKLFSFMMDVLKGMVCEGVNPDLECLTIAMDSFVRVHYVRRAIELFEESESFGVKCSTE 222

Query: 172 ALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMV 231
           + N+LL  +C       A        G I  D+ +Y I++ GW K  +V   +K   EMV
Sbjct: 223 SFNALLRCLCERSHVSAAKSVFNAKKGNIPFDSCSYNIMISGWSKLGEVEEMEKVLKEMV 282

Query: 232 IEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQ 291
            E G+ PD +    S+LI  L     I ++V     +  +G                   
Sbjct: 283 -ESGFGPDCLSY--SHLIEGLGRTGRINDSVEIFDNIKHKG------------------- 320

Query: 292 NLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTY 351
           N+                 PD ++YN MI  +  + +   +M+    M+     P+++TY
Sbjct: 321 NV-----------------PDANVYNAMICNFISARDFDESMRYYRRMLDEECEPNLETY 363

Query: 352 NILFEFLVKGRKLWEASGLFNEMVKN-------------ENVLNHENCRAAVRVYMDSDD 398
           + L   L+KGRK+ +A  +F EM+               + + ++    AA+ +Y  S  
Sbjct: 364 SKLVSGLIKGRKVSDALEIFEEMLSRGVLPTTGLVTSFLKPLCSYGPPHAAMVIYQKSRK 423

Query: 399 PYVAIKFWKY--------------MIENHCSDLSETG--------NLLVAGLCDMHMLPE 436
               I    Y              M+ N   ++ E+G          +V GLC +  L  
Sbjct: 424 AGCRISESAYKLLLKRLSRFGKCGMLLNVWDEMQESGYPSDVEVYEYIVDGLCIIGHLEN 483

Query: 437 AVKYAKGMAEKGIQVTPFALSKLKQILIKARK-EAVYEELLKKCKAH 482
           AV   +    KG     F  S+L   L+ + K E  Y+  LK  KA 
Sbjct: 484 AVLVMEEAMRKGFCPNRFVYSRLSSKLMASNKTELAYKLFLKIKKAR 530


>gi|449444228|ref|XP_004139877.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
 gi|449492643|ref|XP_004159059.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
          Length = 585

 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 87/333 (26%), Positives = 160/333 (48%), Gaps = 15/333 (4%)

Query: 127 MKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKT 186
           M++  +  + T+ S+     +  R+ +A   F  M++ GC  +V    +L+  +CR G  
Sbjct: 153 MRRGYIPDVVTYTSLIKGLCMEHRISEATRLFIRMQKLGCWPNVVTYGTLIKGLCRTGNI 212

Query: 187 IDAWQFLR-VVDG------RIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPD 239
             A +  + +++G        KP+  +Y I+++   K      AK+ F EMV + G  PD
Sbjct: 213 NLALKLHQEMLNGTSPYAINCKPNIFSYNIIIDELCKIGKWKEAKRLFNEMV-DQGVRPD 271

Query: 240 NVPAYDSYLITLLKGCDG-IYETVNSLKRMMERGCNPGM-TFFKLAFEECLTGQNLRGAE 297
            V  + + + TL K  +G + E    L+ MM RG  P + TF  L    CL G +L  A+
Sbjct: 272 -VVTFSALIDTLCK--EGMVIEAKKFLETMMLRGIVPDLFTFTSLIEGFCLVG-DLDSAK 327

Query: 298 FIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEF 357
            ++ +M  + G+ PD   Y ++I  YC +     AMKL +EM+  G +PD++T+ +L + 
Sbjct: 328 ELFLSMPSK-GYEPDVISYTVLIYGYCKTFNVEEAMKLYNEMLRVGKWPDMKTFCVLLKG 386

Query: 358 LVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDL 417
           L    K+ +A  LF  +  +    N   C   +     +   + A++ +  +   +    
Sbjct: 387 LFLAGKVGDAKKLFGVVKPHAVPKNLYICSVFLDGLCKNGCLFEAMELFNELKSYNMKLD 446

Query: 418 SETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQ 450
            E+ N L+ GLC    L  A +  + ++++G+Q
Sbjct: 447 IESFNCLIDGLCKARKLETAWELFEKLSQEGLQ 479



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 75/329 (22%), Positives = 136/329 (41%), Gaps = 49/329 (14%)

Query: 91  SAYQLNDKHSPYAWNLVVDLLGK-------NCLFDAMWDA------------IKSMKKEN 131
           S Y +N K + +++N+++D L K         LF+ M D             I ++ KE 
Sbjct: 227 SPYAINCKPNIFSYNIIIDELCKIGKWKEAKRLFNEMVDQGVRPDVVTFSALIDTLCKEG 286

Query: 132 VL-----------------SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALN 174
           ++                  L TF S+   + +   +  A   F  M   G + DV +  
Sbjct: 287 MVIEAKKFLETMMLRGIVPDLFTFTSLIEGFCLVGDLDSAKELFLSMPSKGYEPDVISYT 346

Query: 175 SLLSAICRDGKTIDAWQFLRVVDGRIK----PDNDTYAILLEGWEKERDVANAKKTFGEM 230
            L+   C   KT +  + +++ +  ++    PD  T+ +LL+G      V +AKK FG  
Sbjct: 347 VLIYGYC---KTFNVEEAMKLYNEMLRVGKWPDMKTFCVLLKGLFLAGKVGDAKKLFG-- 401

Query: 231 VIEVGWDPDNVPAYDSYLITLLK-GCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLT 289
           V++    P N+     +L  L K GC  ++E +     +        +  F    +    
Sbjct: 402 VVKPHAVPKNLYICSVFLDGLCKNGC--LFEAMELFNELKSYNMKLDIESFNCLIDGLCK 459

Query: 290 GQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQ 349
            + L  A  ++  +  + G +PD   Y +MI+ +C + +   A  L   M  NG  P++ 
Sbjct: 460 ARKLETAWELFEKL-SQEGLQPDVVTYCIMINGFCKNGQVDNANILFQMMEENGCTPNLL 518

Query: 350 TYNILFEFLVKGRKLWEASGLFNEMVKNE 378
           TY+ L     K  KL E   L ++M++ +
Sbjct: 519 TYSALLHGFYKNNKLEEVVKLLHKMIQKD 547



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 82/210 (39%), Gaps = 12/210 (5%)

Query: 259 YETVNSL-KRMMERGCNPGMTFFKL-AFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMY 316
           Y  V SL K+M   G +P   FF L     CL   N         A + R G+ PD   Y
Sbjct: 107 YSQVFSLYKKMHLAGLSP--NFFTLNILINCLCNVNRVREGLSAMAGIMRRGYIPDVVTY 164

Query: 317 NMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK 376
             +I   C  +    A +L   M   G +P++ TY  L + L +   +  A  L  EM+ 
Sbjct: 165 TSLIKGLCMEHRISEATRLFIRMQKLGCWPNVVTYGTLIKGLCRTGNINLALKLHQEML- 223

Query: 377 NENVLNHENCRAAVRVYMDSDDPYVAIKFWK-------YMIENHCSDLSETGNLLVAGLC 429
           N       NC+  +  Y    D    I  WK        M++        T + L+  LC
Sbjct: 224 NGTSPYAINCKPNIFSYNIIIDELCKIGKWKEAKRLFNEMVDQGVRPDVVTFSALIDTLC 283

Query: 430 DMHMLPEAVKYAKGMAEKGIQVTPFALSKL 459
              M+ EA K+ + M  +GI    F  + L
Sbjct: 284 KEGMVIEAKKFLETMMLRGIVPDLFTFTSL 313



 Score = 40.0 bits (92), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 35/164 (21%), Positives = 67/164 (40%), Gaps = 6/164 (3%)

Query: 308 GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEA 367
           G  P+    N++I+  C  N     +  +  ++  G  PD+ TY  L + L    ++ EA
Sbjct: 121 GLSPNFFTLNILINCLCNVNRVREGLSAMAGIMRRGYIPDVVTYTSLIKGLCMEHRISEA 180

Query: 368 SGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIEN------HCSDLSETG 421
           + LF  M K     N       ++    + +  +A+K  + M+        +C     + 
Sbjct: 181 TRLFIRMQKLGCWPNVVTYGTLIKGLCRTGNINLALKLHQEMLNGTSPYAINCKPNIFSY 240

Query: 422 NLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIK 465
           N+++  LC +    EA +    M ++G++      S L   L K
Sbjct: 241 NIIIDELCKIGKWKEAKRLFNEMVDQGVRPDVVTFSALIDTLCK 284


>gi|152717466|dbj|BAF73724.1| pentatricopeptide repeat protein [Raphanus sativus]
          Length = 687

 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 78/316 (24%), Positives = 131/316 (41%), Gaps = 39/316 (12%)

Query: 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL- 193
           + TF ++     V DRV +A+  F  M +  C+ +V    +L++ +CR+G+ ++A   L 
Sbjct: 149 VVTFNTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLD 208

Query: 194 RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLK 253
           R+++  ++P   TY  +++G  K+ D  +A     +M  EV     NV  Y + + +L K
Sbjct: 209 RMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKME-EVSHIIPNVVIYSAIIDSLCK 267

Query: 254 GCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDT 313
             DG +    +L   M+                                     G  PD 
Sbjct: 268 --DGRHSDAQNLFTEMQEK-----------------------------------GIFPDL 290

Query: 314 HMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNE 373
             YN MI  +C S     A +LL EM+     PD+ TYN L    VK  K +EA  L++E
Sbjct: 291 FTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDE 350

Query: 374 MVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHM 433
           M+    + N     + +  +   +    A   +  M    CS    T N L+ G C    
Sbjct: 351 MLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKR 410

Query: 434 LPEAVKYAKGMAEKGI 449
           + + ++    M E G+
Sbjct: 411 IDDGMELLHEMTETGL 426



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 82/318 (25%), Positives = 142/318 (44%), Gaps = 31/318 (9%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           ++  ++++  S     R  DA   F  M++ G   D+F  NS++   C  G+  DA Q L
Sbjct: 254 NVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLL 313

Query: 194 R-VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
           + +++ +I PD  TY  L+  + KE     A++ + EM+   G  P+ +  Y S +    
Sbjct: 314 QEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPR-GIIPNTI-TYSSMIDGFC 371

Query: 253 KGCDGIYETVNSLKRMMERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRP 311
           K  + +    +    M  +GC+P + TF  L    C   +   G E +    +   G   
Sbjct: 372 KQ-NRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHE--MTETGLVA 428

Query: 312 DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLF 371
           DT  YN +I  +    +  AA+ LL EM+ +G  PDI T + L + L    KL +A  +F
Sbjct: 429 DTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMF 488

Query: 372 NEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDM 431
             M K++  L             D+  P+  ++           D+ +T N+L++GL + 
Sbjct: 489 KVMQKSKKDL-------------DASHPFNGVE----------PDV-QTYNILISGLINE 524

Query: 432 HMLPEAVKYAKGMAEKGI 449
               EA +  + M  +GI
Sbjct: 525 GKFLEAEELYEEMPHRGI 542



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 62/240 (25%), Positives = 101/240 (42%), Gaps = 31/240 (12%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RV 195
           T++S+   +   +R+  A   F +M   GC  ++   N+L+   C   +  D  + L  +
Sbjct: 362 TYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEM 421

Query: 196 VDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG- 254
            +  +  D  TY  L+ G+    D+  A     EM I  G  PD V        TLL G 
Sbjct: 422 TETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEM-ISSGLCPDIVTCD-----TLLDGL 475

Query: 255 CDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTH 314
           CD        LK  +E         FK+  +   + ++L  +    G         PD  
Sbjct: 476 CDN-----GKLKDALE--------MFKVMQK---SKKDLDASHPFNGV-------EPDVQ 512

Query: 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
            YN++IS      +   A +L +EM + G  PD  TY+ + + L K  +L EA+ +F+ M
Sbjct: 513 TYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSM 572



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 57/256 (22%), Positives = 99/256 (38%), Gaps = 18/256 (7%)

Query: 132 VLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ 191
           V    T+ ++   + +   +  A+     M   G   D+   ++LL  +C +GK  DA +
Sbjct: 427 VADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALE 486

Query: 192 FLRVVD------------GRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPD 239
             +V+               ++PD  TY IL+ G   E     A++ + EM    G  PD
Sbjct: 487 MFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMP-HRGIVPD 545

Query: 240 NVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGM-TFFKLAFEECLTGQNLRGAEF 298
            +  Y S +  L K    + E       M  +  +P + TF  L    C  G+   G E 
Sbjct: 546 TI-TYSSMIDGLCKQ-SRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLEL 603

Query: 299 IWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFL 358
                +GR G   +   Y  +I  +        A+ +  EM+ +G +PD  T   +   L
Sbjct: 604 F--CEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGL 661

Query: 359 VKGRKLWEASGLFNEM 374
               +L  A  +  ++
Sbjct: 662 WSKEELKRAVAMLEKL 677


>gi|15220166|ref|NP_178170.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75264854|sp|Q9M8M3.1|PP136_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g80550, mitochondrial; Flags: Precursor
 gi|6730729|gb|AAF27119.1|AC018849_7 unknown protein; 31926-33272 [Arabidopsis thaliana]
 gi|332198297|gb|AEE36418.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 448

 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 104/403 (25%), Positives = 169/403 (41%), Gaps = 42/403 (10%)

Query: 67  QETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKS 126
           Q+TV + L    +    A++FF W   +   +H+   +N V+D+LGK   F+  W  I  
Sbjct: 47  QKTVCEALTCYSNDWQKALEFFNWVERESGFRHTTETFNRVIDILGKYFEFEISWALINR 106

Query: 127 M--KKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDG 184
           M    E+V +  TF  VF  YV A  V++AI  +D ++ +  + D  +  +L+ A+C   
Sbjct: 107 MIGNTESVPNHVTFRIVFKRYVTAHLVQEAIDAYDKLDDFNLR-DETSFYNLVDALCEHK 165

Query: 185 KTIDAWQFL----RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDN 240
             ++A +       + +G    +   + ++L GW K       K+ + +M  E G   D 
Sbjct: 166 HVVEAEELCFGKNVIGNGFSVSNTKIHNLILRGWSKLGWWGKCKEYWKKMDTE-GVTKD- 223

Query: 241 VPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIW 300
           + +Y  Y+  + K     ++ V   K M  R     +  +          Q +     ++
Sbjct: 224 LFSYSIYMDIMCKSGKP-WKAVKLYKEMKSRRMKLDVVAYNTVIRAIGASQGVEFGIRVF 282

Query: 301 GAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVK 360
             M  R G  P+   +N +I L C       A ++LDEM   G  PD  TY  LF  L K
Sbjct: 283 REMRER-GCEPNVATHNTIIKLLCEDGRMRDAYRMLDEMPKRGCQPDSITYMCLFSRLEK 341

Query: 361 GRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAI--KF------------W 406
                E   LF  M+           R+ VR  MD+   YV +  KF            W
Sbjct: 342 PS---EILSLFGRMI-----------RSGVRPKMDT---YVMLMRKFERWGFLQPVLYVW 384

Query: 407 KYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
           K M E+  +  S   N ++  L    ML  A +Y + M E+G+
Sbjct: 385 KTMKESGDTPDSAAYNAVIDALIQKGMLDMAREYEEEMIERGL 427



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 54/250 (21%), Positives = 100/250 (40%), Gaps = 50/250 (20%)

Query: 102 YAWNLVVDLLGKNCLFDAMWDAIK---SMKKENV-LSLATFASVFSSYVVADRVKDAITT 157
           +++++ +D++   C     W A+K    MK   + L +  + +V  +   +  V+  I  
Sbjct: 225 FSYSIYMDIM---CKSGKPWKAVKLYKEMKSRRMKLDVVAYNTVIRAIGASQGVEFGIRV 281

Query: 158 FDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEK 216
           F  M + GC+ +V   N+++  +C DG+  DA++ L  +  R  +PD+ TY  L    EK
Sbjct: 282 FREMRERGCEPNVATHNTIIKLLCEDGRMRDAYRMLDEMPKRGCQPDSITYMCLFSRLEK 341

Query: 217 ERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPG 276
             ++ +    FG M+          P  D+Y++ + K                       
Sbjct: 342 PSEILS---LFGRMI-----RSGVRPKMDTYVMLMRK----------------------- 370

Query: 277 MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLL 336
             F +  F        L+   ++W  M    G  PD+  YN +I           A +  
Sbjct: 371 --FERWGF--------LQPVLYVWKTM-KESGDTPDSAAYNAVIDALIQKGMLDMAREYE 419

Query: 337 DEMVYNGAFP 346
           +EM+  G  P
Sbjct: 420 EEMIERGLSP 429



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 48/255 (18%), Positives = 101/255 (39%), Gaps = 19/255 (7%)

Query: 215 EKERDVANAKKTFGEMV--------IEVGW--------DPDNVPAYDSYLITLLKGCDG- 257
           E+E    +  +TF  ++         E+ W        + ++VP + ++ I   +     
Sbjct: 72  ERESGFRHTTETFNRVIDILGKYFEFEISWALINRMIGNTESVPNHVTFRIVFKRYVTAH 131

Query: 258 -IYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFR-PDTHM 315
            + E +++  ++ +       +F+ L    C     +   E  +G  V   GF   +T +
Sbjct: 132 LVQEAIDAYDKLDDFNLRDETSFYNLVDALCEHKHVVEAEELCFGKNVIGNGFSVSNTKI 191

Query: 316 YNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
           +N+++  +      G   +   +M   G   D+ +Y+I  + + K  K W+A  L+ EM 
Sbjct: 192 HNLILRGWSKLGWWGKCKEYWKKMDTEGVTKDLFSYSIYMDIMCKSGKPWKAVKLYKEMK 251

Query: 376 KNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLP 435
                L+       +R    S      I+ ++ M E  C     T N ++  LC+   + 
Sbjct: 252 SRRMKLDVVAYNTVIRAIGASQGVEFGIRVFREMRERGCEPNVATHNTIIKLLCEDGRMR 311

Query: 436 EAVKYAKGMAEKGIQ 450
           +A +    M ++G Q
Sbjct: 312 DAYRMLDEMPKRGCQ 326


>gi|125561327|gb|EAZ06775.1| hypothetical protein OsI_29018 [Oryza sativa Indica Group]
          Length = 511

 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 93/390 (23%), Positives = 154/390 (39%), Gaps = 19/390 (4%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVME 162
           A++ VVD LG+   FDA W  +     +   +  TFA +   YV A   + A+  FD ME
Sbjct: 105 AYDAVVDALGRARQFDAAWRLVVEAAADGAATPRTFAVLARRYVAAGMTRQAVRAFDDME 164

Query: 163 QY-GCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVA 221
            + G + D     +LL  +C+      A +       + +P+   Y +L+ GW K     
Sbjct: 165 AFVGREPDAAEFTTLLDTLCKYKYPKVAAEVFNKRKYKYEPNEKMYTVLIYGWCKVNRND 224

Query: 222 NAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD---------GIYETVNSLKRMMERG 272
            A+K   +M+   G +P N+  Y+  L  + +             +    + LK M +RG
Sbjct: 225 MAQKFLKDMIYH-GIEP-NIVTYNILLNGICRHASLHPDYRFDRTVRAAEDLLKEMHQRG 282

Query: 273 CNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAA 332
             P +T + +                ++ +M  R G  P    Y  +I           A
Sbjct: 283 IEPDVTSYSVILHVYSRAHKPELCLCMFRSMKER-GICPTVATYTSVIKCLASCGRLDDA 341

Query: 333 MKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENV----LNHENCRA 388
             LLDEM   G  P   TYN  F+     + +  A  L+N+M    +     ++  N   
Sbjct: 342 ESLLDEMASEGVCPSPATYNCFFKEYRGRKDVNGALQLYNKMKAPGSPATPDIHTYNILL 401

Query: 389 AVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448
            + + ++  D    ++ W  M E+       +  LLV GLCD     EA ++   M E+G
Sbjct: 402 GMFIKLNQHD--TVMQVWNDMCESTVGPDLNSYTLLVHGLCDNKKWREACQFFMEMIERG 459

Query: 449 IQVTPFALSKLKQILIKARKEAVYEELLKK 478
                     L + LI+A     +  L K+
Sbjct: 460 FLPQKITFETLYRGLIQADMLRTWRRLKKR 489


>gi|302788594|ref|XP_002976066.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
 gi|300156342|gb|EFJ22971.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
          Length = 440

 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 96/381 (25%), Positives = 163/381 (42%), Gaps = 47/381 (12%)

Query: 110 LLGKNCLFDAMWDAIK----SMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYG 165
           LL   C    + +A+K    ++K+  V  + T+ ++ + +  AD++ +A      M    
Sbjct: 51  LLHGFCKVGELDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSEN 110

Query: 166 CKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKE-RDVANAK 224
              DV   NSL++ +C++G+  +A     +VD    P+  TY+ L+ G  +E R V+ A 
Sbjct: 111 LVPDVVTYNSLVNGLCKNGRVDEARML--IVDKGFSPNVITYSTLISGLCRELRGVSEAL 168

Query: 225 KTFGEMVIEVGWDPDNVPAYDSYLITLLKG----------------------------CD 256
           K FG  V++ G++P+ VP Y+  +  LLK                              D
Sbjct: 169 KLFGS-VLKQGYEPE-VPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFID 226

Query: 257 G------IYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFR 310
           G      + + +  LK M E+GC P +             + +  AE +   M  + G  
Sbjct: 227 GLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAK-GCS 285

Query: 311 PDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGR---KLWEA 367
           P+   +N +I   C + +   AM    EM+  G  P + TYNIL + L K R   ++ EA
Sbjct: 286 PNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEA 345

Query: 368 SGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAG 427
             LF+ M++   V +     A +     +     A +    M    C     T N L++G
Sbjct: 346 ITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLISG 405

Query: 428 LCDMHMLPEAVKYAKGMAEKG 448
           LC +  + EA++    M EKG
Sbjct: 406 LCGLEKVDEALELFVAMVEKG 426



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 77/326 (23%), Positives = 139/326 (42%), Gaps = 26/326 (7%)

Query: 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL- 193
           + T+ ++   +     + +A+  FD   + G   DV   N+L++  C+  K  +A + L 
Sbjct: 45  VVTYNTLLHGFCKVGELDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQ 104

Query: 194 RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLK 253
           R+V   + PD  TY  L+ G  K   V  A+     ++++ G+ P NV  Y + +  L +
Sbjct: 105 RMVSENLVPDVVTYNSLVNGLCKNGRVDEARM----LIVDKGFSP-NVITYSTLISGLCR 159

Query: 254 GCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDT 313
              G+ E +     ++++G  P +  + +  +  L    +  A  ++  +V + G  PD 
Sbjct: 160 ELRGVSEALKLFGSVLKQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLV-KHGLEPDA 218

Query: 314 HMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNE 373
             Y + I   C +     A+ +L +M   G  PD+ ++N +   L K +++ EA  L + 
Sbjct: 219 ITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSG 278

Query: 374 MVKNE--------NVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLV 425
           M            N L    CRA             A+  +K M++        T N+LV
Sbjct: 279 MEAKGCSPNAISFNTLICGQCRAG--------KWKKAMTTFKEMLKRGVKPTVVTYNILV 330

Query: 426 AGLCDMHM---LPEAVKYAKGMAEKG 448
            GLC       + EA+     M EKG
Sbjct: 331 DGLCKARQEGRIKEAITLFDAMIEKG 356



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 85/345 (24%), Positives = 155/345 (44%), Gaps = 15/345 (4%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           T+ ++ S      R+ DA   ++ M + G   DV   N+LL   C+ G+  +A   L++ 
Sbjct: 12  TYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGELDEA---LKIF 68

Query: 197 DGRIK----PDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
           DG +K    PD  TY  L+ G+ K   +  A++    MV E    PD V  Y+S +  L 
Sbjct: 69  DGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSE-NLVPD-VVTYNSLVNGLC 126

Query: 253 KGCDGIYETVNSLKRMMERGCNPG-MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRP 311
           K  +G  +    L  ++++G +P  +T+  L    C   + +  A  ++G+++ + G+ P
Sbjct: 127 K--NGRVDEARML--IVDKGFSPNVITYSTLISGLCRELRGVSEALKLFGSVL-KQGYEP 181

Query: 312 DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLF 371
           +   YN++I      +    A +L   +V +G  PD  TY +  + L K  ++ +A  + 
Sbjct: 182 EVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLML 241

Query: 372 NEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDM 431
            +M +   V +  +  A +           A      M    CS  + + N L+ G C  
Sbjct: 242 KDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRA 301

Query: 432 HMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELL 476
               +A+   K M ++G++ T    + L   L KAR+E   +E +
Sbjct: 302 GKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAI 346



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 95/335 (28%), Positives = 151/335 (45%), Gaps = 35/335 (10%)

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERD 219
           M ++G   +    N+LLS +C  G+  DA   + R++     PD  TY  LL G+ K  +
Sbjct: 1   MRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGE 60

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPG-MT 278
           +  A K F +  ++ G+ PD V  Y++ +    K  D + E    L+RM+     P  +T
Sbjct: 61  LDEALKIF-DGAVKRGFVPD-VVTYNALINGFCKA-DKLDEAQRILQRMVSENLVPDVVT 117

Query: 279 FFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYS-NETGAAMKLLD 337
           +  L    C  G+       I        GF P+   Y+ +IS  C        A+KL  
Sbjct: 118 YNSLVNGLCKNGRVDEARMLIVDK-----GFSPNVITYSTLISGLCRELRGVSEALKLFG 172

Query: 338 EMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNE--------NVLNHENCRAA 389
            ++  G  P++ TYNIL + L+K  ++ EA  LF+ +VK+          V     C+A 
Sbjct: 173 SVLKQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAG 232

Query: 390 VRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
            RV    +D   A+   K M E  C     + N ++ GLC    + EA     GM  KG 
Sbjct: 233 -RV----ED---ALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKG- 283

Query: 450 QVTPFALSKLKQILIKAR----KEAV--YEELLKK 478
             +P A+S    I  + R    K+A+  ++E+LK+
Sbjct: 284 -CSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKR 317



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 69/276 (25%), Positives = 123/276 (44%), Gaps = 8/276 (2%)

Query: 84  AVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVF- 142
           A+K F     Q  +   P  +N+++D L K    +  ++    + K  +   A   +VF 
Sbjct: 167 ALKLFGSVLKQGYEPEVP-TYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFI 225

Query: 143 SSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IK 201
                A RV+DA+     M++ GC  DV + N++++ +C++ +  +A   L  ++ +   
Sbjct: 226 DGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCS 285

Query: 202 PDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG-CDG-IY 259
           P+  ++  L+ G  +      A  TF EM ++ G  P  V  Y+  +  L K   +G I 
Sbjct: 286 PNAISFNTLICGQCRAGKWKKAMTTFKEM-LKRGVKP-TVVTYNILVDGLCKARQEGRIK 343

Query: 260 ETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMM 319
           E +     M+E+G  P +  +    +       L  A  + GAM  + G  P+ + YN +
Sbjct: 344 EAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAK-GCIPNVYTYNSL 402

Query: 320 ISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILF 355
           IS  C   +   A++L   MV  G  PD  TY  + 
Sbjct: 403 ISGLCGLEKVDEALELFVAMVEKGCVPDTITYGTII 438


>gi|357499785|ref|XP_003620181.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495196|gb|AES76399.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 559

 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 91/374 (24%), Positives = 167/374 (44%), Gaps = 13/374 (3%)

Query: 111 LGKNCL-FDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHD 169
           LG+N L F  +   +K   + NV++L T   +     +  ++  A+   D +   G   +
Sbjct: 120 LGQNPLSFSVLAKILKMGYEPNVITLTT---LIKGLCLKGQIHQALQFHDKVVALGFHLN 176

Query: 170 VFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFG 228
             +  +L++ +C+ G+T  A Q LR VDG+ ++P+   Y  +++   K + V  A   + 
Sbjct: 177 KVSYGTLINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYS 236

Query: 229 EMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECL 288
           EMV + G  PD V  Y++ LI+       + +  +   +M+    NP +  F +  +   
Sbjct: 237 EMVSK-GISPD-VVTYNA-LISGFCIVGKMKDATDLFNKMIFENINPNVYTFNILVDGFC 293

Query: 289 TGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDI 348
             + L+ A+ +  AM+ + G +PD   YN ++  YC   E   A  + + +   G  P+I
Sbjct: 294 KERRLKEAKNVL-AMMMKQGIKPDVFTYNSLMDRYCLVKEVNKAKHIFNTISQRGVNPNI 352

Query: 349 QTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKY 408
            +Y+I+     K +K+ EA  LF EM  N  + +     + +           A+K    
Sbjct: 353 HSYSIMIHGFCKIKKVDEAMNLFKEMHCNNIIPDVVTYNSLIDGLCKLGKISYALKLVDE 412

Query: 409 MIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARK 468
           M +        T N ++  LC  H + +A+     M ++GIQ      + L   L K  +
Sbjct: 413 MHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDICTYTTLVDGLCKNGR 472

Query: 469 ----EAVYEELLKK 478
                 V+E+LL K
Sbjct: 473 LEDARIVFEDLLVK 486



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 82/349 (23%), Positives = 156/349 (44%), Gaps = 8/349 (2%)

Query: 104 WNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVME 162
           +N ++D + K  L +  +D    M  + +   + T+ ++ S + +  ++KDA   F+ M 
Sbjct: 215 YNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYNALISGFCIVGKMKDATDLFNKMI 274

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVA 221
                 +V+  N L+   C++ +  +A   L ++  + IKPD  TY  L++ +   ++V 
Sbjct: 275 FENINPNVYTFNILVDGFCKERRLKEAKNVLAMMMKQGIKPDVFTYNSLMDRYCLVKEVN 334

Query: 222 NAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGM-TFF 280
            AK  F   + + G +P N+ +Y S +I        + E +N  K M      P + T+ 
Sbjct: 335 KAKHIFNT-ISQRGVNP-NIHSY-SIMIHGFCKIKKVDEAMNLFKEMHCNNIIPDVVTYN 391

Query: 281 KLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMV 340
            L    C  G+ +  A  +   M  R G   D   YN ++   C +++   A+ LL +M 
Sbjct: 392 SLIDGLCKLGK-ISYALKLVDEMHDR-GVPHDKITYNSILDALCKNHQVDKAIALLTKMK 449

Query: 341 YNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPY 400
             G  PDI TY  L + L K  +L +A  +F +++    +L+     A ++ +       
Sbjct: 450 DEGIQPDICTYTTLVDGLCKNGRLEDARIVFEDLLVKGYILDVNIYTAMIQGFCSHGLFD 509

Query: 401 VAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
            ++     M EN C   + T  +++  L D     +A K  + M  +G+
Sbjct: 510 ESLDLLSKMEENGCIPNAVTYEIIICSLFDKDENDKAEKLLREMITRGL 558


>gi|221554580|gb|ACM24117.1| PPR protein [Raphanus sativus]
          Length = 688

 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 84/353 (23%), Positives = 145/353 (41%), Gaps = 46/353 (13%)

Query: 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSL----ATFASVFSSYVVADRVKDAITT 157
           Y++N+++      C    +  A+ +  K   L L     TF ++     V DRV +A+  
Sbjct: 115 YSFNILIKCF---CSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALDF 171

Query: 158 FDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEK 216
           F  M +  C+ +V    +L++ +CR+G+ ++A   L R+++  ++P   TY  +++G  K
Sbjct: 172 FHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCK 231

Query: 217 ERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPG 276
           + D  +A     +M  EV     NV  Y + + +L K  DG +    +L   M+      
Sbjct: 232 KGDTVSALNLLRKME-EVSHIIPNVVIYSAIIDSLCK--DGRHSDAQNLFTEMQEK---- 284

Query: 277 MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLL 336
                                          G  PD   YN MI  +C S     A +LL
Sbjct: 285 -------------------------------GIFPDLFTYNSMIVGFCSSGRWSDAEQLL 313

Query: 337 DEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDS 396
            EM+     PD+ TYN L    VK  K +EA+ L++EM+    + N     + +  +   
Sbjct: 314 QEMLERKISPDVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQ 373

Query: 397 DDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
           D    A   +  M    CS    T   L+ G C    + + ++    M  +G+
Sbjct: 374 DRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGL 426



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 85/337 (25%), Positives = 147/337 (43%), Gaps = 31/337 (9%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           ++  ++++  S     R  DA   F  M++ G   D+F  NS++   C  G+  DA Q L
Sbjct: 254 NVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLL 313

Query: 194 R-VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
           + +++ +I PD  TY  L+  + KE     A + + EM+   G  P+ +  Y+S +    
Sbjct: 314 QEMLERKISPDVVTYNALINAFVKEGKFFEAAELYDEMLPR-GIIPNTI-TYNSMIDGFC 371

Query: 253 KGCDGIYETVNSLKRMMERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRP 311
           K  D +    +    M  +GC+P + TF  L    C   +   G E +    + R G   
Sbjct: 372 KQ-DRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHE--MPRRGLVA 428

Query: 312 DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLF 371
           +T  YN +I  +C   +  AA+ L  +M+ +G  PDI T N L + L    KL +A  +F
Sbjct: 429 NTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMF 488

Query: 372 NEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDM 431
             M K+             ++ +D+  P+  ++           D+  T N+L+ GL + 
Sbjct: 489 KAMQKS-------------KMDLDASHPFNGVE----------PDVL-TYNILICGLINE 524

Query: 432 HMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARK 468
               EA +  + M  +GI       S +   L K  +
Sbjct: 525 GKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSR 561



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 83/331 (25%), Positives = 133/331 (40%), Gaps = 12/331 (3%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-F 192
           S+  F  +    V  +R    I+ +  ME+   + D+++ N L+   C   K   A   F
Sbjct: 78  SVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFNILIKCFCSCSKLPFALSTF 137

Query: 193 LRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
            ++    + PD  T+  LL G   E  V+ A   F +M  E    P NV  + + +  L 
Sbjct: 138 GKITKLGLHPDVVTFTTLLHGLCVEDRVSEALDFFHQM-FETTCRP-NVVTFTTLMNGLC 195

Query: 253 KGCDG-IYETVNSLKRMMERGCNPG-MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFR 310
           +  +G I E V  L RMME G  P  +T+  +    C  G  +     +   M       
Sbjct: 196 R--EGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLR-KMEEVSHII 252

Query: 311 PDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYN-ILFEFLVKGRKLW-EAS 368
           P+  +Y+ +I   C       A  L  EM   G FPD+ TYN ++  F   GR  W +A 
Sbjct: 253 PNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGR--WSDAE 310

Query: 369 GLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGL 428
            L  EM++ +   +     A +  ++     + A + +  M+       + T N ++ G 
Sbjct: 311 QLLQEMLERKISPDVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGF 370

Query: 429 CDMHMLPEAVKYAKGMAEKGIQVTPFALSKL 459
           C    L  A      MA KG     F  + L
Sbjct: 371 CKQDRLDAAEDMFYLMATKGCSPDVFTFTTL 401



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 73/310 (23%), Positives = 119/310 (38%), Gaps = 31/310 (10%)

Query: 89  RWSAYQ------LNDKHSP--YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFA 139
           RWS  +      L  K SP    +N +++   K   F    +    M    ++ +  T+ 
Sbjct: 305 RWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYN 364

Query: 140 SVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR 199
           S+   +   DR+  A   F +M   GC  DVF   +L+   C   +  D  + L  +  R
Sbjct: 365 SMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRR 424

Query: 200 -IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG-CDG 257
            +  +  TY  L+ G+    D+ NA     + +I  G  PD V        TLL G CD 
Sbjct: 425 GLVANTVTYNTLIHGFCLVGDL-NAALDLSQQMISSGVCPDIVTCN-----TLLDGLCDN 478

Query: 258 --IYETVNSLKRMME-----------RGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMV 304
             + + +   K M +            G  P +  + +     +       AE ++  M 
Sbjct: 479 GKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMP 538

Query: 305 GRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKL 364
            R G  PDT  Y+ MI   C  +    A ++   M      P++ T+N L     K  ++
Sbjct: 539 HR-GIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRV 597

Query: 365 WEASGLFNEM 374
            +   LF EM
Sbjct: 598 DDGLELFCEM 607



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 58/240 (24%), Positives = 96/240 (40%), Gaps = 19/240 (7%)

Query: 132 VLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ 191
           V +  T+ ++   + +   +  A+     M   G   D+   N+LL  +C +GK  DA +
Sbjct: 427 VANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALE 486

Query: 192 FLRVVD------------GRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPD 239
             + +               ++PD  TY IL+ G   E     A++ + EM    G  PD
Sbjct: 487 MFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMP-HRGIVPD 545

Query: 240 NVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGM-TFFKLAFEECLTGQNLRGAEF 298
            +  Y S +  L K    + E       M  +  +P + TF  L    C  G+   G E 
Sbjct: 546 TI-TYSSMIDGLCKQ-SRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLEL 603

Query: 299 IWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPD-IQTYNILFEF 357
                +GR G   D  +Y  +I  +        A+ +  EM+ +G +PD I   N+L  F
Sbjct: 604 F--CEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGF 661



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 71/314 (22%), Positives = 118/314 (37%), Gaps = 30/314 (9%)

Query: 86  KFFRWSAYQLNDKHSP-------YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLAT 137
           KFF   A +L D+  P         +N ++D   K    DA  D    M  +     + T
Sbjct: 340 KFFE--AAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFT 397

Query: 138 FASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDG---KTIDAWQFLR 194
           F ++   Y  A R+ D +     M + G   +    N+L+   C  G     +D  Q  +
Sbjct: 398 FTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQ--Q 455

Query: 195 VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEV----------GWDPDNVPAY 244
           ++   + PD  T   LL+G      + +A + F  M              G +PD V  Y
Sbjct: 456 MISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPD-VLTY 514

Query: 245 DSYLITLLKGCDGIYETVNSL-KRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAM 303
           +  +  L+   +G +     L + M  RG  P    +    +       L  A  ++ +M
Sbjct: 515 NILICGLIN--EGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSM 572

Query: 304 VGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRK 363
            G   F P+   +N +I+ YC +      ++L  EM   G   D   Y  L     K   
Sbjct: 573 -GSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGN 631

Query: 364 LWEASGLFNEMVKN 377
           +  A  +F EM+ +
Sbjct: 632 INGALDIFQEMISS 645


>gi|334183626|ref|NP_176639.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122242336|sp|Q0WKZ3.1|PP105_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g64580
 gi|110741328|dbj|BAF02214.1| hypothetical protein [Arabidopsis thaliana]
 gi|332196134|gb|AEE34255.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 523

 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 107/483 (22%), Positives = 195/483 (40%), Gaps = 49/483 (10%)

Query: 14  SPDPHNKRKRSTFASHLDVPNLPPTIKTLCEIIANTPSPTVEDVLDKTLIRVSQETVEQV 73
           S   H+   R    + L            CE++ + P P++ D   + L  +++     +
Sbjct: 39  SGASHHHHYRERLRNELHCIKFDDAFSLFCEMLQSRPIPSIVD-FTRVLTVIAKMNKFDI 97

Query: 74  LKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL 133
           + + Y                L   H  Y++ +++    +          +  M K    
Sbjct: 98  VIYLYH-----------KMENLGISHDLYSFTILIHCFCRCSRLSLALALLGKMMKLGFR 146

Query: 134 -SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQF 192
            S+ T  S+ + +   +R ++A++  D M+ +G   +V   N++++ +C++    +A + 
Sbjct: 147 PSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRDLNNALEV 206

Query: 193 LRVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITL 251
              ++ + I+ D  TY  L+ G        +A +   +MV +   DP NV  + + + T 
Sbjct: 207 FYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMV-KRKIDP-NVIFFTALIDTF 264

Query: 252 LKGCDGIYETVNSLKRMMERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFR 310
           +K    + E  N  K M+ R   P + T+  L    C+ G  L  A++++  MV + G  
Sbjct: 265 VKE-GNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGC-LGDAKYMFDLMVSK-GCF 321

Query: 311 PDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGL 370
           PD   YN +I+ +C S      MKL  EM Y G   D  TYN L     +  KL  A  +
Sbjct: 322 PDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKV 381

Query: 371 FNEMVK--------NENVL-----NHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDL 417
           FN MV           N+L     N+     A+ +  D     + +    Y         
Sbjct: 382 FNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDIITY--------- 432

Query: 418 SETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLK 477
               N+++ GLC    L EA    + +  KG++  P A++ +  I    RK  +  E  K
Sbjct: 433 ----NIIIQGLCRTDKLKEAWCLFRSLTRKGVK--PDAIAYITMISGLCRK-GLQREADK 485

Query: 478 KCK 480
            C+
Sbjct: 486 LCR 488



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/229 (23%), Positives = 102/229 (44%), Gaps = 9/229 (3%)

Query: 127 MKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKT 186
           +++  V ++ T+ S+ + + +   + DA   FD+M   GC  DV   N+L++  C+  + 
Sbjct: 281 IRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKGCFPDVVTYNTLITGFCKSKRV 340

Query: 187 IDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYD 245
            D  + F  +    +  D  TY  L+ G+ +   +  A+K F  MV + G  PD V    
Sbjct: 341 EDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMV-DCGVSPDIV---- 395

Query: 246 SYLITLLKGCDG--IYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAM 303
           +Y I L   C+   I + +  ++ + +   +  +  + +  +       L+ A  ++ ++
Sbjct: 396 TYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDIITYNIIIQGLCRTDKLKEAWCLFRSL 455

Query: 304 VGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYN 352
             R G +PD   Y  MIS  C       A KL   M  +G  P  + Y+
Sbjct: 456 T-RKGVKPDAIAYITMISGLCRKGLQREADKLCRRMKEDGFMPSERIYD 503


>gi|302761712|ref|XP_002964278.1| hypothetical protein SELMODRAFT_80975 [Selaginella moellendorffii]
 gi|300168007|gb|EFJ34611.1| hypothetical protein SELMODRAFT_80975 [Selaginella moellendorffii]
          Length = 331

 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 84/325 (25%), Positives = 140/325 (43%), Gaps = 13/325 (4%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDA-WQFLRV 195
           T+  +        R+ DA+ T + M   G K D F  N +LS +C++ K  +A   F ++
Sbjct: 11  TYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKM 70

Query: 196 VDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
           V  RI P+  TY  L+ G  K   +  A + F EM  + G+ P  V +Y++ +    K  
Sbjct: 71  VKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGK-GYVPTEV-SYNTLIDGFCKKK 128

Query: 256 DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHM 315
           D +    +   +M+   C P +  +    +       ++ A  +   MV + G  P+   
Sbjct: 129 D-LVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKK-GVTPNVAT 186

Query: 316 YNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
           Y+ +I  +C       A KLL++MV  G  P + TYNIL   L +  KL +A  LF  M 
Sbjct: 187 YSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMA 246

Query: 376 KNE---NVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMH 432
           +      V+ +     A+  +   D  +   + +  MI   C   + T + L  GL    
Sbjct: 247 QRRCHPTVVTYNTLLRALCHHKQLDGAH---RLYAEMIAKGCPPDAITYDTLAWGLTRAG 303

Query: 433 MLPEAVKYAKGMAEKGIQVTPFALS 457
            + EA +  + M  K  +  PF  S
Sbjct: 304 KVHEAQELMEKM--KLTKRNPFGRS 326



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 66/281 (23%), Positives = 118/281 (41%), Gaps = 8/281 (2%)

Query: 202 PDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYET 261
           PD  TY  ++E   K + + +A  T  EM    G  PD    Y+  L  L +  + + E 
Sbjct: 7   PDALTYGPIVERLCKTKRIDDALATVEEMATR-GIKPDAF-IYNFVLSGLCQE-EKVEEA 63

Query: 262 VNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMIS 321
               ++M+++  NP +  +            +  A  ++  M G+ G+ P    YN +I 
Sbjct: 64  RLLFEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGK-GYVPTEVSYNTLID 122

Query: 322 LYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVL 381
            +C   +  AA  + D+MV +   P++ TY  L + L K  K+  A+ + + MVK     
Sbjct: 123 GFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTP 182

Query: 382 NHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYA 441
           N       +  +        A K  + M+    +    T N+L+  LC    L +A K  
Sbjct: 183 NVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLF 242

Query: 442 KGMAEKGIQVTPFALSKLKQILIKARK----EAVYEELLKK 478
           +GMA++    T    + L + L   ++      +Y E++ K
Sbjct: 243 RGMAQRRCHPTVVTYNTLLRALCHHKQLDGAHRLYAEMIAK 283



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 66/260 (25%), Positives = 107/260 (41%), Gaps = 11/260 (4%)

Query: 116 LFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNS 175
           LF+ M   +K     NV+   T+ ++ +    A R++ A   F  M   G      + N+
Sbjct: 66  LFEKM---VKQRINPNVV---TYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNT 119

Query: 176 LLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEV 234
           L+   C+    + A   F ++V     P+  TY  L++G  K   V  A +    MV + 
Sbjct: 120 LIDGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMV-KK 178

Query: 235 GWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLR 294
           G  P NV  Y S LI        + E    L++M+ +G  P +  + +          L 
Sbjct: 179 GVTP-NVATY-SCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLE 236

Query: 295 GAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNIL 354
            A  ++  M  R    P    YN ++   C+  +   A +L  EM+  G  PD  TY+ L
Sbjct: 237 DAFKLFRGMAQR-RCHPTVVTYNTLLRALCHHKQLDGAHRLYAEMIAKGCPPDAITYDTL 295

Query: 355 FEFLVKGRKLWEASGLFNEM 374
              L +  K+ EA  L  +M
Sbjct: 296 AWGLTRAGKVHEAQELMEKM 315



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 78/174 (44%), Gaps = 5/174 (2%)

Query: 104 WNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVME 162
           +  ++D L K+    A  + +  M K+ V  ++AT++ +   +    RV +A    + M 
Sbjct: 152 YTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQMV 211

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYAILLEGWEKERDVA 221
             G    V   N LL+++CR  K  DA++  R +   R  P   TY  LL      + + 
Sbjct: 212 TQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQRRCHPTVVTYNTLLRALCHHKQLD 271

Query: 222 NAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNP 275
            A + + EM+ + G  PD +  YD+    L +    ++E    +++M     NP
Sbjct: 272 GAHRLYAEMIAK-GCPPDAI-TYDTLAWGLTRA-GKVHEAQELMEKMKLTKRNP 322


>gi|449507709|ref|XP_004163108.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Cucumis sativus]
          Length = 999

 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 80/289 (27%), Positives = 134/289 (46%), Gaps = 26/289 (8%)

Query: 100 SPYAWNLVV-------DLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVK 152
           SP+ +++++       DL   N + D M   I++  K NV     + ++  +YV   R +
Sbjct: 450 SPFTYSVLISGLCHSSDLQKANEVLDQM---IRNGVKPNVF---MYGTLIKAYVQESRYE 503

Query: 153 DAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR--IKPDNDTYAIL 210
            AI    +M   G   D+F  N L+  +CR  K ++  + L V  G   IKP+  TY   
Sbjct: 504 MAIELLKIMIANGVLPDLFCYNCLIIGLCR-AKKVEEAKMLLVDMGEKGIKPNAHTYGAF 562

Query: 211 LEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD--GIYETVNSLKRM 268
           +  + K  ++  A++ F +M +  G  P+NV     Y I +   CD     E +++ K M
Sbjct: 563 INLYSKSGEIQVAERYFKDM-LSSGIVPNNVI----YTILIKGHCDVGNTVEALSTFKCM 617

Query: 269 MERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNE 328
           +E+G  P +  +             + A  ++   + + G  PD  +YN +IS +C   +
Sbjct: 618 LEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFL-KTGVVPDVFLYNSLISGFCKEGD 676

Query: 329 TGAAMKLLDEMVYNGAFPDIQTYNILFE--FLVKGRKLWEASGLFNEMV 375
              A +L DEM++NG  P+I  YN L       K   L EA  LF+EM+
Sbjct: 677 IEKASQLYDEMLHNGINPNIVVYNTLINDYGYCKSGNLTEAFKLFDEMI 725



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 87/349 (24%), Positives = 158/349 (45%), Gaps = 10/349 (2%)

Query: 105 NLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYV-VADRVKDAITTFDVME 162
           NL+ DLL  N +    W    SM +  ++  + T+ +V  ++  V D +K  +   ++ +
Sbjct: 212 NLMRDLLKAN-MMGLFWKVYGSMVEAKIVPDVYTYTNVIKAHCKVGDVIKGKMVLSEMEK 270

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV-DGRIKPDNDTYAILLEGWEKERDVA 221
           +  CK ++F  N+ +  +C+ G   +A +  +++ +  + PD  TY +L++G+ K++   
Sbjct: 271 E--CKPNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSK 328

Query: 222 NAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFK 281
            AK  F E +   G +P N   Y + +   +K  + I E +     M+ RG    +  + 
Sbjct: 329 EAKLIF-ESMPSSGLNP-NRFTYTALIDGFIKEGN-IEEALRIKDEMITRGLKLNVVTYN 385

Query: 282 LAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVY 341
                      +  A  ++  M+   G  PDT  YN++I  Y  S++   A +LL EM  
Sbjct: 386 AMIGGIAKAGEMAKAMSLFNEML-MAGIEPDTWTYNLLIDGYLKSHDMAKACELLAEMKA 444

Query: 342 NGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYV 401
               P   TY++L   L     L +A+ + ++M++N    N       ++ Y+      +
Sbjct: 445 RKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEM 504

Query: 402 AIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQ 450
           AI+  K MI N         N L+ GLC    + EA      M EKGI+
Sbjct: 505 AIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIK 553



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 82/317 (25%), Positives = 139/317 (43%), Gaps = 11/317 (3%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           T+  +   +    R K+A   F+ M   G   + F   +L+    ++G   +A   LR+ 
Sbjct: 313 TYTLLVDGFCKQKRSKEAKLIFESMPSSGLNPNRFTYTALIDGFIKEGNIEEA---LRIK 369

Query: 197 DGRI----KPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
           D  I    K +  TY  ++ G  K  ++A A   F EM++  G +PD    Y+  +   L
Sbjct: 370 DEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLM-AGIEPDTW-TYNLLIDGYL 427

Query: 253 KGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD 312
           K  D + +    L  M  R   P    + +         +L+ A  +   M+ R G +P+
Sbjct: 428 KSHD-MAKACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMI-RNGVKPN 485

Query: 313 THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFN 372
             MY  +I  Y   +    A++LL  M+ NG  PD+  YN L   L + +K+ EA  L  
Sbjct: 486 VFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLV 545

Query: 373 EMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMH 432
           +M +     N     A + +Y  S +  VA +++K M+ +     +    +L+ G CD+ 
Sbjct: 546 DMGEKGIKPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVG 605

Query: 433 MLPEAVKYAKGMAEKGI 449
              EA+   K M EKG+
Sbjct: 606 NTVEALSTFKCMLEKGL 622



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 78/330 (23%), Positives = 142/330 (43%), Gaps = 10/330 (3%)

Query: 153 DAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILL 211
           +A++TF  M + G   D+ A ++++ ++ ++GKT +A   FL+ +   + PD   Y  L+
Sbjct: 609 EALSTFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLI 668

Query: 212 EGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDG--IYETVNSLKRMM 269
            G+ KE D+  A + + EM +  G +P N+  Y++ LI     C    + E       M+
Sbjct: 669 SGFCKEGDIEKASQLYDEM-LHNGINP-NIVVYNT-LINDYGYCKSGNLTEAFKLFDEMI 725

Query: 270 ERGCNPGMTFFKLAFEECLTGQNLRGA-EFIWGAMVGRIGFRPDTHMYNMMISLYCYSNE 328
            +G +P    + +  + C    NL  A      A    +G       +N +I  +C   +
Sbjct: 726 SKGISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKSVG---SLSAFNSLIDSFCKHGK 782

Query: 329 TGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRA 388
              A +L D+MV     P+I TY IL +   K   + EA  LF +M     + N     +
Sbjct: 783 VIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLTYTS 842

Query: 389 AVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448
            +  Y    + +  I  +K M     +  +    ++ +  C      EA+K       +G
Sbjct: 843 LLLSYNQIGNRFKMISLFKDMEARGIACDAIAYGVMASAYCKEGKSLEALKLLNKSLVEG 902

Query: 449 IQVTPFALSKLKQILIKARKEAVYEELLKK 478
           I++       L   L K ++ +   ELL +
Sbjct: 903 IKLEDDVFDALIFHLCKEKQISTVLELLSE 932



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 82/387 (21%), Positives = 142/387 (36%), Gaps = 77/387 (19%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRV 195
           T+ ++   ++    +++A+   D M   G K +V   N+++  I + G+   A   F  +
Sbjct: 348 TYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEM 407

Query: 196 VDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEM------------------------- 230
           +   I+PD  TY +L++G+ K  D+A A +   EM                         
Sbjct: 408 LMAGIEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCHSSDL 467

Query: 231 ---------VIEVGWDPDNVPAYDSYLITLLKGCDGIYE-TVNSLKRMMERGCNPGMTFF 280
                    +I  G  P NV  Y + +   ++  +  YE  +  LK M+  G  P +  +
Sbjct: 468 QKANEVLDQMIRNGVKP-NVFMYGTLIKAYVQ--ESRYEMAIELLKIMIANGVLPDLFCY 524

Query: 281 KLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMV 340
                     + +  A+ +   M G  G +P+ H Y   I+LY  S E   A +   +M+
Sbjct: 525 NCLIIGLCRAKKVEEAKMLLVDM-GEKGIKPNAHTYGAFINLYSKSGEIQVAERYFKDML 583

Query: 341 YNGA-----------------------------------FPDIQTYNILFEFLVKGRKLW 365
            +G                                     PDI+ Y+ +   L K  K  
Sbjct: 584 SSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIHSLSKNGKTK 643

Query: 366 EASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLV 425
           EA G+F + +K   V +     + +  +    D   A + +  M+ N  +      N L+
Sbjct: 644 EAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLI 703

Query: 426 A--GLCDMHMLPEAVKYAKGMAEKGIQ 450
              G C    L EA K    M  KGI 
Sbjct: 704 NDYGYCKSGNLTEAFKLFDEMISKGIS 730



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 58/239 (24%), Positives = 100/239 (41%), Gaps = 40/239 (16%)

Query: 172 ALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEM 230
           A NSL+ + C+ GK I+A + F  +VD ++ P+  TY IL++ + K   +  A++ F +M
Sbjct: 769 AFNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDM 828

Query: 231 VIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTG 290
             E      N   Y S L++        Y  + +  +M+        + FK         
Sbjct: 829 --ETRNIIPNTLTYTSLLLS--------YNQIGNRFKMI--------SLFK--------- 861

Query: 291 QNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQT 350
                       M  R G   D   Y +M S YC   ++  A+KLL++ +  G   +   
Sbjct: 862 -----------DMEAR-GIACDAIAYGVMASAYCKEGKSLEALKLLNKSLVEGIKLEDDV 909

Query: 351 YNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYM 409
           ++ L   L K +++     L +EM K E  L+ + C   +  +  S +   A K    M
Sbjct: 910 FDALIFHLCKEKQISTVLELLSEMGKEELSLSSKTCNTLLLGFYKSGNEDEASKVLGVM 968



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 76/392 (19%), Positives = 148/392 (37%), Gaps = 59/392 (15%)

Query: 87  FFRWSAYQLNDKHSPYAWNLVVDLLGKNCLF---DAMWDAIKSMKKENVLSLATFA---- 139
           FF WS+ +++     ++++++   L  + L    D M + +   +K  +  L +      
Sbjct: 106 FFHWSSSKMSTPQYLHSYSILAIRLCNSGLIHQADNMLEKLLQTRKPPLEILDSLVRCYR 165

Query: 140 -------SVFSSYVVADRV----KDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTID 188
                  +VF  ++   RV     +A + F      G    +   N+L+  + +      
Sbjct: 166 EFGGSNLTVFDIFIDKFRVLGFLNEASSVFIASISEGFFPTLICCNNLMRDLLKANMMGL 225

Query: 189 AWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSY 247
            W+ +  +V+ +I PD  TY  +++   K  DV   K    EM  E      N+  Y+++
Sbjct: 226 FWKVYGSMVEAKIVPDVYTYTNVIKAHCKVGDVIKGKMVLSEMEKEC---KPNLFTYNAF 282

Query: 248 LITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRI 307
           +  L +    + E +   K MME+G                                   
Sbjct: 283 IGGLCQ-TGAVDEALEVKKLMMEKG----------------------------------- 306

Query: 308 GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEA 367
              PD H Y +++  +C    +  A  + + M  +G  P+  TY  L +  +K   + EA
Sbjct: 307 -LGPDGHTYTLLVDGFCKQKRSKEAKLIFESMPSSGLNPNRFTYTALIDGFIKEGNIEEA 365

Query: 368 SGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAG 427
             + +EM+     LN     A +     + +   A+  +  M+       + T NLL+ G
Sbjct: 366 LRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGIEPDTWTYNLLIDG 425

Query: 428 LCDMHMLPEAVKYAKGMAEKGIQVTPFALSKL 459
               H + +A +    M  + +  +PF  S L
Sbjct: 426 YLKSHDMAKACELLAEMKARKLTPSPFTYSVL 457



 Score = 47.8 bits (112), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 67/132 (50%), Gaps = 6/132 (4%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSY-VVADRVKDAITTFDV 160
            + +++D  GK  + +        M+  N++ +  T+ S+  SY  + +R K  I+ F  
Sbjct: 804 TYTILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLTYTSLLLSYNQIGNRFK-MISLFKD 862

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR--VVDGRIKPDNDTYAILLEGWEKER 218
           ME  G   D  A   + SA C++GK+++A + L   +V+G IK ++D +  L+    KE+
Sbjct: 863 MEARGIACDAIAYGVMASAYCKEGKSLEALKLLNKSLVEG-IKLEDDVFDALIFHLCKEK 921

Query: 219 DVANAKKTFGEM 230
            ++   +   EM
Sbjct: 922 QISTVLELLSEM 933



 Score = 38.5 bits (88), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 38/173 (21%), Positives = 69/173 (39%)

Query: 310 RPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASG 369
           +P+   YN  I   C +     A+++   M+  G  PD  TY +L +   K ++  EA  
Sbjct: 273 KPNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKL 332

Query: 370 LFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLC 429
           +F  M  +    N     A +  ++   +   A++    MI         T N ++ G+ 
Sbjct: 333 IFESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIA 392

Query: 430 DMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKCKAH 482
               + +A+     M   GI+   +  + L    +K+   A   ELL + KA 
Sbjct: 393 KAGEMAKAMSLFNEMLMAGIEPDTWTYNLLIDGYLKSHDMAKACELLAEMKAR 445


>gi|388516039|gb|AFK46081.1| unknown [Lotus japonicus]
          Length = 327

 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 70/255 (27%), Positives = 128/255 (50%), Gaps = 7/255 (2%)

Query: 126 SMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGK 185
           ++++ N +SL T+  +  + ++   V D +   D M + G + D+F  N+++  +CR+G 
Sbjct: 16  TLQQTNPISLVTYTILIEATILKGGVDDVMKLLDEMIESGLRPDMFIFNAVVGGMCREGL 75

Query: 186 TIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAY 244
              A++F+R +  +   PD  +Y+ILL G   +R   + +K   +M+ + G +P NV  Y
Sbjct: 76  VDRAFEFIRYISAKGYAPDVISYSILLRGLLNQRKWEDGEKLMSDMLSK-GCEP-NVVTY 133

Query: 245 DSYLITLLKGCDGIYETVNSLKRMMERGCNP-GMTFFKLAFEECLTGQNLRGAEFIWGAM 303
            S LI+ L     + E V+ LK M E+G  P   ++  L    C   +     EF+  +M
Sbjct: 134 -SILISSLCRDGKVEEAVSLLKVMKEQGLTPDAYSYDPLIAAFCKESRVDLAIEFLE-SM 191

Query: 304 VGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRK 363
           +   G  PD   YN ++S  C + +   A+K+ +++   G  P++ +YN LF  L     
Sbjct: 192 ISD-GCLPDIVNYNTILSTLCKNGKADEALKIFEKLGEVGCPPNVSSYNTLFSALWSSGH 250

Query: 364 LWEASGLFNEMVKNE 378
              A G+  EM+  +
Sbjct: 251 KIRALGMILEMLSKD 265



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 62/209 (29%), Positives = 101/209 (48%), Gaps = 7/209 (3%)

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERD 219
           M   GC+ +V   + L+S++CRDGK  +A   L+V+  + + PD  +Y  L+  + KE  
Sbjct: 121 MLSKGCEPNVVTYSILISSLCRDGKVEEAVSLLKVMKEQGLTPDAYSYDPLIAAFCKESR 180

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTF 279
           V  A + F E +I  G  PD V  Y++ L TL K      E +   +++ E GC P ++ 
Sbjct: 181 VDLAIE-FLESMISDGCLPDIV-NYNTILSTLCKNGKA-DEALKIFEKLGEVGCPPNVSS 237

Query: 280 FKLAFEEC-LTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDE 338
           +   F     +G  +R    I   +   I   PD   YN +IS  C       A++LL +
Sbjct: 238 YNTLFSALWSSGHKIRALGMILEMLSKDID--PDEITYNSLISCLCRDAMVDQAIELLVD 295

Query: 339 MVYNGAFPDIQTYNILFEFLVKGRKLWEA 367
           M  +   P + +YNI+   L K  ++ +A
Sbjct: 296 MESSVYQPSVISYNIVLLGLSKVHRISDA 324



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 87/200 (43%), Gaps = 5/200 (2%)

Query: 250 TLLKGCDGIYETVNSLKRMMERGCNPGMTFFK-LAFEECLTGQNLRGAEFIWGAMVGRIG 308
           T+LKG  G+ + +  L  M+E G  P M  F  +    C  G   R  EFI    +   G
Sbjct: 35  TILKG--GVDDVMKLLDEMIESGLRPDMFIFNAVVGGMCREGLVDRAFEFI--RYISAKG 90

Query: 309 FRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEAS 368
           + PD   Y++++       +     KL+ +M+  G  P++ TY+IL   L +  K+ EA 
Sbjct: 91  YAPDVISYSILLRGLLNQRKWEDGEKLMSDMLSKGCEPNVVTYSILISSLCRDGKVEEAV 150

Query: 369 GLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGL 428
            L   M +     +  +    +  +       +AI+F + MI + C       N +++ L
Sbjct: 151 SLLKVMKEQGLTPDAYSYDPLIAAFCKESRVDLAIEFLESMISDGCLPDIVNYNTILSTL 210

Query: 429 CDMHMLPEAVKYAKGMAEKG 448
           C      EA+K  + + E G
Sbjct: 211 CKNGKADEALKIFEKLGEVG 230


>gi|356546852|ref|XP_003541836.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15200-like [Glycine max]
          Length = 481

 Score = 94.7 bits (234), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 105/425 (24%), Positives = 183/425 (43%), Gaps = 15/425 (3%)

Query: 32  VPNLPPT-IKTLCEIIANTPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRW 90
           V + P T I+ L +   + P+  +   LD+    ++ + V  VL+   S   PA  FF W
Sbjct: 31  VHSCPATFIQNLLKFRRDKPTEQLYRALDQCGFDLNHDLVLDVLRRHRSDWRPAHVFFNW 90

Query: 91  SAYQLND-KHSPYAWNLVVDLLGKNCLFDAMWDAIKSM-KKENVLSLATFASVFSSYVVA 148
           ++      + S    N +VD+LGK   F  +   +  M K+E +L  A FA++   +V A
Sbjct: 91  ASKTTTGYQPSSDVCNEIVDILGKMQRFQELHQVLDEMSKREELLDEAVFATLVRRFVGA 150

Query: 149 DRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTY 207
            +V +AI  F   +++G + +  A  +LL  +CR     DA   F   V   ++ D   +
Sbjct: 151 HKVDEAIQLFYRRKEFGLELNSEAFRTLLMWLCRYKHVEDAEALFHNSVKKGLRADIKMW 210

Query: 208 AILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKR 267
            ++L GW    +   AK+ + ++V      PD +  Y +++  L K   G   T   L R
Sbjct: 211 NVILNGWCVLGNSHEAKRVWRDIVASPC-KPD-IFTYATFIKALTK--KGKLGTALKLFR 266

Query: 268 -MMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYS 326
            M ++G  P +       +     + +  A  I+  M  R G  P+   YN +I   C  
Sbjct: 267 GMWDKGGKPDVVICNCIIDALCFKKRIPEALEIFCDMSER-GCEPNVATYNSLIKYMCKI 325

Query: 327 NETGAAMKLLDEMVY--NGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHE 384
                  +L+DEM        P+  TY  L + L   ++  E   +   M +N   +N +
Sbjct: 326 QRMKKVYELVDEMERKKGSCLPNAVTYCYLLKSL---KEPGEVCRVLERMERNGCGMNDD 382

Query: 385 NCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGM 444
                +R+YM  DD     K W+ M  N       +  +++    +   + +AV+Y + M
Sbjct: 383 VYNMVLRLYMKWDDGDGVRKTWEEMERNGWGPDRRSYTIMIHENFEKGRVKDAVRYLEEM 442

Query: 445 AEKGI 449
             KG+
Sbjct: 443 ISKGM 447



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 63/266 (23%), Positives = 111/266 (41%), Gaps = 15/266 (5%)

Query: 104 WNLVVD---LLGKNCLFDAMW-DAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFD 159
           WN++++   +LG +     +W D + S  K ++ + ATF    +      ++  A+  F 
Sbjct: 210 WNVILNGWCVLGNSHEAKRVWRDIVASPCKPDIFTYATFIKALTK---KGKLGTALKLFR 266

Query: 160 VMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKER 218
            M   G K DV   N ++ A+C   +  +A + F  + +   +P+  TY  L++   K +
Sbjct: 267 GMWDKGGKPDVVICNCIIDALCFKKRIPEALEIFCDMSERGCEPNVATYNSLIKYMCKIQ 326

Query: 219 DVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMT 278
            +    +   EM  + G    N   Y  YL+  LK      E    L+RM   GC     
Sbjct: 327 RMKKVYELVDEMERKKGSCLPNAVTY-CYLLKSLKEPG---EVCRVLERMERNGCGMNDD 382

Query: 279 FFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDE 338
            + +     +   +  G    W  M  R G+ PD   Y +MI           A++ L+E
Sbjct: 383 VYNMVLRLYMKWDDGDGVRKTWEEM-ERNGWGPDRRSYTIMIHENFEKGRVKDAVRYLEE 441

Query: 339 MVYNGAFPDIQTYNIL--FEFLVKGR 362
           M+  G  P+ +T  ++      +KGR
Sbjct: 442 MISKGMVPERRTEKLVSSMNIRLKGR 467



 Score = 43.1 bits (100), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 48/222 (21%), Positives = 86/222 (38%), Gaps = 3/222 (1%)

Query: 248 LITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRI 307
           L+    G   + E +    R  E G       F+         +++  AE ++   V + 
Sbjct: 143 LVRRFVGAHKVDEAIQLFYRRKEFGLELNSEAFRTLLMWLCRYKHVEDAEALFHNSVKK- 201

Query: 308 GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEA 367
           G R D  M+N++++ +C    +  A ++  ++V +   PDI TY    + L K  KL  A
Sbjct: 202 GLRADIKMWNVILNGWCVLGNSHEAKRVWRDIVASPCKPDIFTYATFIKALTKKGKLGTA 261

Query: 368 SGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAG 427
             LF  M       +   C   +           A++ +  M E  C     T N L+  
Sbjct: 262 LKLFRGMWDKGGKPDVVICNCIIDALCFKKRIPEALEIFCDMSERGCEPNVATYNSLIKY 321

Query: 428 LCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKE 469
           +C +  + +  +    M  K     P A++     L+K+ KE
Sbjct: 322 MCKIQRMKKVYELVDEMERKKGSCLPNAVTYC--YLLKSLKE 361


>gi|302818914|ref|XP_002991129.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
 gi|300141060|gb|EFJ07775.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
          Length = 614

 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 84/317 (26%), Positives = 135/317 (42%), Gaps = 21/317 (6%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-V 195
           T++ +      A+RV  A+   + M+  GC  DV     L+  +C++ K   AW+ LR +
Sbjct: 193 TYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREM 252

Query: 196 VDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
           +D    P+  TY  LL G  + R V++A     +M    G  P NV  Y + +  L K  
Sbjct: 253 LDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCR-GCTP-NVVTYGTLIDGLCK-V 309

Query: 256 DGIYETVNSLKRMMERGCNPGMTFFKLAFEE-CLTGQNLRGAEFIWGAMVGRIGFRPDTH 314
             + +    L  M+++G  P +  + +     C   Q       +  A+ G  G +PD  
Sbjct: 310 GRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSG--GIKPDVV 367

Query: 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
            Y+ +I   C SN    A +LL  +   G  PD+  Y+ L + L K  K+ EA  L+   
Sbjct: 368 TYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYE-- 425

Query: 375 VKNENVLNHENCRAAVRVYMDSDDPYV-------AIKFWKYMIENHCSDLSETGNLLVAG 427
                V+  + C A V  Y    D          A      M+       + T N L+ G
Sbjct: 426 -----VMAGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKG 480

Query: 428 LCDMHMLPEAVKYAKGM 444
           LCD++ L EA++  + M
Sbjct: 481 LCDLNHLDEAIELVEEM 497



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 94/389 (24%), Positives = 170/389 (43%), Gaps = 15/389 (3%)

Query: 92  AYQLNDKHSP--YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVA 148
           ++ ++D+ SP    +++++D L K        + ++SMK       + T+  +       
Sbjct: 180 SHDMDDRCSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKE 239

Query: 149 DRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTY 207
            +V  A      M   GC  ++   NSLL  +CR  +  DA   +R +  R   P+  TY
Sbjct: 240 SKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTY 299

Query: 208 AILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKR 267
             L++G  K   V +A     +M I+ G  PD +  Y+  +  L K  D + E++  L+R
Sbjct: 300 GTLIDGLCKVGRVKDACAMLADM-IDKGGTPD-LMIYNMLINGLCKA-DQVDESIALLRR 356

Query: 268 MMERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYS 326
            +  G  P + T+  + +  C + +       +    V   G  PD  +Y+ +I   C +
Sbjct: 357 AVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLL--YVKSRGCPPDVILYSTLIDGLCKA 414

Query: 327 NETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENC 386
            +   A  L + M  +G   D+ TY+ L + L K  ++ EA  L   MV+     +    
Sbjct: 415 GKVDEAFDLYEVMAGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTY 474

Query: 387 RAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAV-----KYA 441
            + ++   D +    AI+  + M  ++C+  + T N+L+ G+C M  +  AV       A
Sbjct: 475 NSLIKGLCDLNHLDEAIELVEEMERSNCAPSAVTYNILIHGMCRMERVDSAVVLLEQAKA 534

Query: 442 KGMAEKGIQVTPFALSKLKQILIKARKEA 470
           + +A  G  +   A S L   L KA + A
Sbjct: 535 RCVAAGGTALDTIAYSSLIDGLCKAGRVA 563



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 87/332 (26%), Positives = 139/332 (41%), Gaps = 36/332 (10%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           T+A++   +     +  A   FD M       +VF  + L+  +C+  ++IDA +  R +
Sbjct: 11  TYAALLRGFCRGGEIDQAQRCFDEMRSKNLVPNVFLCSILIDGLCKAKRSIDALRCFRAM 70

Query: 197 DGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG- 254
            G  I  D   Y  LL G  KE+ +  A     EM  + G +P NV  Y+S +  L K  
Sbjct: 71  QGSGIVADTVIYTALLSGLWKEKRLDQALAILHEMR-DHGCEP-NVVTYNSLIDGLCKNN 128

Query: 255 ----CDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGF- 309
                  ++E + S++      C+P M  +    +       L  A  ++  M+ R    
Sbjct: 129 EPDRAQELFEHMKSVE------CSPSMVTYNTLLDGLFRTGKLERAMALFQEMLDRRSHD 182

Query: 310 -----RPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKL 364
                 P+   Y+++I   C +N    A++LL+ M   G  PD+ TY IL + L K  K+
Sbjct: 183 MDDRCSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKV 242

Query: 365 WEASGLFNEMVK--------NENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSD 416
             A  +  EM+           N L H  CRA  RV   SD    A+   + M    C+ 
Sbjct: 243 AAAWEVLREMLDAGCVPNLVTYNSLLHGLCRAR-RV---SD----ALALMRDMTCRGCTP 294

Query: 417 LSETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448
              T   L+ GLC +  + +A      M +KG
Sbjct: 295 NVVTYGTLIDGLCKVGRVKDACAMLADMIDKG 326



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 66/251 (26%), Positives = 109/251 (43%), Gaps = 15/251 (5%)

Query: 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR 194
           + T++SV      ++R+ +A      ++  GC  DV   ++L+  +C+ GK  +A+    
Sbjct: 366 VVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYE 425

Query: 195 VVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLK 253
           V+ G     D  TY+ L++G  K   V  A      MV  +G  P  +  Y+S    L+K
Sbjct: 426 VMAGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMV-RMGTPPSTM-TYNS----LIK 479

Query: 254 G-CD--GIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRI--- 307
           G CD   + E +  ++ M    C P    + +        + +  A  +      R    
Sbjct: 480 GLCDLNHLDEAIELVEEMERSNCAPSAVTYNILIHGMCRMERVDSAVVLLEQAKARCVAA 539

Query: 308 -GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWE 366
            G   DT  Y+ +I   C +     A+    EM+ NG  PD  TY+IL E L K + L E
Sbjct: 540 GGTALDTIAYSSLIDGLCKAGRVAEALDYFQEMIDNGVIPDHITYSILLEGLKKSKDLHE 599

Query: 367 ASGL-FNEMVK 376
              L  ++MV+
Sbjct: 600 LRHLVLDQMVQ 610



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 73/284 (25%), Positives = 120/284 (42%), Gaps = 29/284 (10%)

Query: 201 KPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYE 260
           +PD  TYA LL G+ +  ++  A++ F EM        + VP  + +L ++L   DG+ +
Sbjct: 6   QPDVYTYAALLRGFCRGGEIDQAQRCFDEM-----RSKNLVP--NVFLCSILI--DGLCK 56

Query: 261 ---TVNSLK--RMMERGCNPGMTFFKLAFEECLTG----QNLRGAEFIWGAMVGRIGFRP 311
              ++++L+  R M+     G+    + +   L+G    + L  A  I   M    G  P
Sbjct: 57  AKRSIDALRCFRAMQ---GSGIVADTVIYTALLSGLWKEKRLDQALAILHEMRDH-GCEP 112

Query: 312 DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLF 371
           +   YN +I   C +NE   A +L + M      P + TYN L + L +  KL  A  LF
Sbjct: 113 NVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMALF 172

Query: 372 NEMVKNENVLNHENCRAAVRVYMDSDDPYV-------AIKFWKYMIENHCSDLSETGNLL 424
            EM+   +    + C   V  Y    D          A++  + M    CS    T  +L
Sbjct: 173 QEMLDRRSHDMDDRCSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTIL 232

Query: 425 VAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARK 468
           V GLC    +  A +  + M + G        + L   L +AR+
Sbjct: 233 VDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRARR 276



 Score = 51.6 bits (122), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 29/127 (22%), Positives = 63/127 (49%), Gaps = 7/127 (5%)

Query: 117 FDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFD-----VMEQYGCKHDV 170
            D   + ++ M++ N   S  T+  +       +RV  A+   +      +   G   D 
Sbjct: 487 LDEAIELVEEMERSNCAPSAVTYNILIHGMCRMERVDSAVVLLEQAKARCVAAGGTALDT 546

Query: 171 FALNSLLSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGE 229
            A +SL+  +C+ G+  +A  + + ++D  + PD+ TY+ILLEG +K +D+   +    +
Sbjct: 547 IAYSSLIDGLCKAGRVAEALDYFQEMIDNGVIPDHITYSILLEGLKKSKDLHELRHLVLD 606

Query: 230 MVIEVGW 236
            ++++G+
Sbjct: 607 QMVQLGY 613


>gi|449529622|ref|XP_004171797.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 618

 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 93/401 (23%), Positives = 183/401 (45%), Gaps = 28/401 (6%)

Query: 91  SAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVAD 149
           S Y +N K     +++++D L K    D   +  + MK + ++  + +++++   +  A 
Sbjct: 227 SQYGVNCKPGVITYSIIIDGLCKVGREDEAKELFEEMKAQGMIPDVISYSTLIHGFCCAG 286

Query: 150 RVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYA 208
           +   +   FD M   G + D+   + L+  +C++GK  +A + L V+  R I P+  TY 
Sbjct: 287 KWDQSKHLFDEMVDQGVQPDMVTFSVLIDTLCKEGKVTEAKKLLEVMIQRGIVPNLITYN 346

Query: 209 ILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG-CDG--IYETVNSL 265
            L++G+    D+ +A++ F  M  + G +PD +    SY  TL+ G C    + E +N  
Sbjct: 347 SLIDGFCMVGDLNSARELFLSMPSK-GLEPDEI----SY-TTLINGYCKTWKVKEAMNLY 400

Query: 266 KRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCY 325
             M++ G +P +T +    +       +  A+ ++G M    G   ++ +Y + +   C 
Sbjct: 401 NEMLQVGKSPNVTTYGTLLKGLFQKGKVGDAKKLFGVM-KTYGVSANSQIYGIFLDGLCK 459

Query: 326 SNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM--------VKN 377
           ++    AM+L +E+       +I+ Y+ L + L K  KL  A  LF ++        V  
Sbjct: 460 NDCLFEAMELFNELKSYNFKLNIENYSCLIDGLCKAGKLETAWELFEKLSQEGLQPDVVT 519

Query: 378 ENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEA 437
            N++ H  C+         D+  +    ++ M EN C+      N L+ G C+ + L E 
Sbjct: 520 YNIMIHGFCKVG-----QVDNANI---LFEKMEENGCTPDIIAYNTLLCGFCEGNKLEEV 571

Query: 438 VKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKK 478
           +K    M +K +     + + +  +L K  K   + +LL K
Sbjct: 572 IKLLHKMVQKDVSPNAASCTIVVDMLCKDEKYKKFVDLLPK 612



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 63/267 (23%), Positives = 114/267 (42%), Gaps = 19/267 (7%)

Query: 127 MKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKT 186
           M+   +  +++F  +       +      + ++ M   G   D+F L+ L + +C   + 
Sbjct: 83  MRSHPIPPISSFNRLLGGLAKINHYSQLFSLYNEMRLAGLSPDLFTLSILANCLCNVNRV 142

Query: 187 IDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYD 245
            +A   +  +  R   P+  TY  L++G   E  ++ A + F  M  ++G  P+ V  Y 
Sbjct: 143 SEALAAMAGILRRGYIPNVVTYTTLIKGLCMEHRISEATRLFLRMQ-KLGCTPNAV-TYG 200

Query: 246 SYLITLLKGCDGIYETVNSLKRMMER---------GCNPGMTFFKLAFEE-CLTGQNLRG 295
               TL+KG         +LK   E           C PG+  + +  +  C  G+    
Sbjct: 201 ----TLIKGLCQTGNVNIALKLHKEMLNDASQYGVNCKPGVITYSIIIDGLCKVGREDEA 256

Query: 296 AEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILF 355
            E ++  M  + G  PD   Y+ +I  +C + +   +  L DEMV  G  PD+ T+++L 
Sbjct: 257 KE-LFEEMKAQ-GMIPDVISYSTLIHGFCCAGKWDQSKHLFDEMVDQGVQPDMVTFSVLI 314

Query: 356 EFLVKGRKLWEASGLFNEMVKNENVLN 382
           + L K  K+ EA  L   M++   V N
Sbjct: 315 DTLCKEGKVTEAKKLLEVMIQRGIVPN 341


>gi|224081867|ref|XP_002306508.1| predicted protein [Populus trichocarpa]
 gi|222855957|gb|EEE93504.1| predicted protein [Populus trichocarpa]
          Length = 439

 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 104/417 (24%), Positives = 178/417 (42%), Gaps = 27/417 (6%)

Query: 47  ANTPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNL 106
           + TP+P   D L+     +   TV Q L    +    A+ FF W   +   +H+   +N 
Sbjct: 31  SRTPNPPQSDPLN-----LDSSTVFQTLSCYNNDWKRALDFFNWVETESQFQHTTETYNR 85

Query: 107 VVDLLGKNCLFDAMWDAIKSMKKE--NVLSLATFASVFSSYVVADRVKDAITTF-DVMEQ 163
           ++D+LGK   FD  WD I+ M+    +  +  TF  +F  Y+ A  V +A++ + D +++
Sbjct: 86  MIDILGKFFEFDLSWDLIQRMRNNPFSTPNHTTFRVLFHRYISAHLVNEAVSVYEDRLKE 145

Query: 164 YGCKHDVFALNSLLSAICRDGKTIDAWQFL---RVVDGRIKPDNDTYAILLEGWEKERDV 220
           +G K D  +   L+ A+C     I+A +           ++     Y ++L GW K    
Sbjct: 146 FGLK-DETSYCILVDALCEYKHVIEAHELCFGNNNNSINVRNITKIYNMILRGWFKMGWW 204

Query: 221 ANAKKTFGEM-VIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTF 279
              ++ + EM   EV  D   + +Y  Y+  L K     ++ V   K M  +G    +  
Sbjct: 205 GKCREFWEEMDRKEVCKD---LHSYSIYMDILCKS-GKPWKAVKLYKEMKSKGIKLDV-- 258

Query: 280 FKLAFEECLTGQNL-RGAEFIWGAM--VGRIGFRPDTHMYNMMISLYCYSNETGAAMKLL 336
             +A+   +    L  G +F+      +  +G +P+    N +I L C +     A K+L
Sbjct: 259 --VAYNTVINAIGLSEGVDFVLRVYREMRELGCQPNVVTCNTVIKLLCENGRIKEAYKML 316

Query: 337 DEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDS 396
           DEM  +   PD+ TY+  F  L K +   E   LF++M++N      +     +R +   
Sbjct: 317 DEMPQSYIAPDVFTYHCFFRCLEKPK---EILCLFDQMIENGVCPRMDTYVMLMRKFGRW 373

Query: 397 DDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTP 453
                    WK M +  CS      N L+  L    M+  A KY + M  KG+   P
Sbjct: 374 GFLRPVFLVWKKMEKLGCSPDEFAYNALIDALIQKGMVDMARKYDEEMMAKGLSAKP 430


>gi|222637127|gb|EEE67259.1| hypothetical protein OsJ_24425 [Oryza sativa Japonica Group]
          Length = 799

 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 96/391 (24%), Positives = 165/391 (42%), Gaps = 22/391 (5%)

Query: 100 SPYAWNLVVDLLGKNCLFDAMWDAIKSMK----KENVLSLATFASVFSSYVVADRVKDAI 155
           +P A+  V+ LL   C    + DA++ ++       VL  A F +V S +     +  A 
Sbjct: 319 NPVAYTSVIALL---CDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAAR 375

Query: 156 TTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV-DGRIKPDNDTYAILLEGW 214
             FD M++ G   D     +L++ +CR G+  +A + L+ + D  +  D  TY +L++G+
Sbjct: 376 NWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGY 435

Query: 215 EKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCN 274
            K   +  A     +MV +    P NV  Y +    L K  D     V +   ++   C+
Sbjct: 436 CKVGKMTEAFLVHNKMV-QKRVTP-NVVTYTALSDGLCKQGD-----VCAANELLHEMCS 488

Query: 275 PGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRI-----GFRPDTHMYNMMISLYCYSNET 329
            G+      +   + G  L  A  +  AM   I     G +PD + Y  +I   C S E 
Sbjct: 489 KGLELNIFTYNSLING--LCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKEL 546

Query: 330 GAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAA 389
             A  LL EM+  G  P I TYN+L        ++     L   M++     N     + 
Sbjct: 547 DRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSL 606

Query: 390 VRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
           ++ Y    +     + +K M+         T N+L+ G C    + EA+ +   M EKG 
Sbjct: 607 MKQYCIEKNMKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEKGF 666

Query: 450 QVTPFALSKLKQILIKARKEAVYEELLKKCK 480
           ++T  + + L ++L K +K      L +K +
Sbjct: 667 RLTASSYNALIRLLNKKKKFTEARRLFEKMR 697



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 84/316 (26%), Positives = 131/316 (41%), Gaps = 24/316 (7%)

Query: 174 NSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIE 233
           N LL A+C  G+  DA Q    +     PD  TY I++ G+    ++  A K   EM   
Sbjct: 257 NILLKALCTAGRIKDAHQLFDEMAS--PPDVVTYGIMVHGYCTLSELETAIKLLSEMAAR 314

Query: 234 VGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNL 293
            G + + V AY S +I LL  CD     V+   R++E     G+      F   ++G   
Sbjct: 315 -GLELNPV-AYTS-VIALL--CDE--GQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCR 367

Query: 294 RG---AEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQT 350
           +G   A   W   + + G   D   Y  +I+  C + E   A ++L EM   G   D  T
Sbjct: 368 KGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVT 427

Query: 351 YNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMI 410
           Y +L +   K  K+ EA  + N+MV+     N     A         D   A +    M 
Sbjct: 428 YTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEM- 486

Query: 411 ENHCSDLSE----TGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKA 466
              CS   E    T N L+ GLC    L +A++    M E G++   +  + +   L ++
Sbjct: 487 ---CSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQS 543

Query: 467 ----RKEAVYEELLKK 478
               R  ++ +E+L K
Sbjct: 544 KELDRAHSLLQEMLDK 559



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/247 (22%), Positives = 106/247 (42%), Gaps = 9/247 (3%)

Query: 133 LSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQF 192
           L++ T+ S+ +    A  ++ A+ T   M++ G K DV+   +++ A+C+  +   A   
Sbjct: 493 LNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSL 552

Query: 193 LR-VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITL 251
           L+ ++D  IKP   TY +L+ G+     V   K+   E ++E    P N   Y+S +   
Sbjct: 553 LQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLL-EWMLEKNIHP-NTTTYNSLMK-- 608

Query: 252 LKGC--DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGF 309
            + C    +  T    K M+ +   P    + +  +     +N++ A +    M+ + GF
Sbjct: 609 -QYCIEKNMKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEK-GF 666

Query: 310 RPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASG 369
           R     YN +I L     +   A +L ++M       +   YN   +       L     
Sbjct: 667 RLTASSYNALIRLLNKKKKFTEARRLFEKMRKERLTAEPDVYNFYIDLSFNEDNLESTLA 726

Query: 370 LFNEMVK 376
           L +E+V+
Sbjct: 727 LCDELVE 733


>gi|255539805|ref|XP_002510967.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550082|gb|EEF51569.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 774

 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 83/316 (26%), Positives = 143/316 (45%), Gaps = 8/316 (2%)

Query: 138 FASVFSSYVVADRVKDA-ITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           F  + + YV + R+ +A    +D M + GC+ DVF  N+L+  +C+ G    A   +  +
Sbjct: 347 FTILINGYVKSGRLDEANAFLYDKMIKNGCRPDVFTFNTLIHGLCKKGLMGSAVDMVNDM 406

Query: 197 DGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
                 P+  TY  LL+G+ K+  +  A     EM  + G++  N+  Y+  L  L K  
Sbjct: 407 SANGCTPNLITYTTLLDGFCKKNQLEEAGYVLNEMSAK-GFEL-NIMGYNVLLRALCKN- 463

Query: 256 DGIYETVNSLKRMMERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTH 314
             + + ++ L  M ++GC P + TF  L F  C   +           ++   G   +T 
Sbjct: 464 GKVPKALDMLGEMSDKGCKPDIFTFNTLIFGLCKVDRKEDALALYRDMLLD--GVIANTV 521

Query: 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
            YN +I  +        A+KL+++M++ G   D  TYN L +   K     +A GLF+EM
Sbjct: 522 TYNTLIHAFLRGGAIQEALKLVNDMLFRGCPLDEITYNGLIKAFCKLGATEKALGLFDEM 581

Query: 375 VKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHML 434
           V+ + V ++ +C   +           A++  + MI    +    T N L+ GLC M  +
Sbjct: 582 VRKDLVPSNISCNLLINGLCRVGKVCNALELLRDMIHRGLAPDVVTYNSLINGLCKMGNI 641

Query: 435 PEAVKYAKGMAEKGIQ 450
            EA      +  +GIQ
Sbjct: 642 REAFNLFNKLQAEGIQ 657



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 91/432 (21%), Positives = 181/432 (41%), Gaps = 24/432 (5%)

Query: 57  VLDKTLIRVSQETVE-------QVLKF--SYSHPGPAVKFFRWSAYQLNDKHSPYAWNLV 107
           V+DK L+++ +E +         ++K+    + PG A +           + +  ++N+V
Sbjct: 120 VIDKLLLQIKEEGIAFRESLFICIMKYYGRANLPGQATRMLLDMKGVYCCEPTFKSYNVV 179

Query: 108 VDLL-GKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGC 166
           +D+L   NC   A     + + K  + ++ TF  V  +  + + V +A +    M ++GC
Sbjct: 180 LDILVSANCPSVAANVFYEMLSKGVIPTVYTFGVVMKALCMVNEVDNACSLLRDMTKHGC 239

Query: 167 KHDVFALNSLLSAICRDGKTIDAWQFLR--VVDGRIKPDNDTYAILLEGWEKERDVANAK 224
             +     +L+ A+ +  +  +A + L    + G + PD DT+  ++ G  +   +    
Sbjct: 240 VPNSVVYQTLIHALSKRDRVNEALKLLEEMFLMGCL-PDVDTFNDVIYGLCRLNRIHEGA 298

Query: 225 KTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAF 284
           K    M+   G+ P+++    +Y + +   C      V+  + ++ +   P    F +  
Sbjct: 299 KLVDRMLFR-GFTPNDI----TYGVLMNGLCR--VGKVDEAQVLLNKVPTPNDVHFTILI 351

Query: 285 EECLTGQNLRGAE-FIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNG 343
              +    L  A  F++  M+ + G RPD   +N +I   C     G+A+ ++++M  NG
Sbjct: 352 NGYVKSGRLDEANAFLYDKMI-KNGCRPDVFTFNTLIHGLCKKGLMGSAVDMVNDMSANG 410

Query: 344 AFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAI 403
             P++ TY  L +   K  +L EA  + NEM      LN       +R    +     A+
Sbjct: 411 CTPNLITYTTLLDGFCKKNQLEEAGYVLNEMSAKGFELNIMGYNVLLRALCKNGKVPKAL 470

Query: 404 KFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQIL 463
                M +  C     T N L+ GLC +    +A+   + M   G+       + L    
Sbjct: 471 DMLGEMSDKGCKPDIFTFNTLIFGLCKVDRKEDALALYRDMLLDGVIANTVTYNTLIHAF 530

Query: 464 IKARKEAVYEEL 475
           +  R  A+ E L
Sbjct: 531 L--RGGAIQEAL 540



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 70/276 (25%), Positives = 127/276 (46%), Gaps = 8/276 (2%)

Query: 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDV 160
           + +N ++  L K  L  +  D +  M       +L T+ ++   +   +++++A    + 
Sbjct: 381 FTFNTLIHGLCKKGLMGSAVDMVNDMSANGCTPNLITYTTLLDGFCKKNQLEEAGYVLNE 440

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERD 219
           M   G + ++   N LL A+C++GK   A   L  + D   KPD  T+  L+ G  K   
Sbjct: 441 MSAKGFELNIMGYNVLLRALCKNGKVPKALDMLGEMSDKGCKPDIFTFNTLIFGLCKVDR 500

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCN-PGMT 278
             +A   + +M+++      N   Y++ +   L+G   I E +  +  M+ RGC    +T
Sbjct: 501 KEDALALYRDMLLD--GVIANTVTYNTLIHAFLRG-GAIQEALKLVNDMLFRGCPLDEIT 557

Query: 279 FFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDE 338
           +  L    C  G   + A  ++  MV R    P     N++I+  C   +   A++LL +
Sbjct: 558 YNGLIKAFCKLGATEK-ALGLFDEMV-RKDLVPSNISCNLLINGLCRVGKVCNALELLRD 615

Query: 339 MVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
           M++ G  PD+ TYN L   L K   + EA  LFN++
Sbjct: 616 MIHRGLAPDVVTYNSLINGLCKMGNIREAFNLFNKL 651



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 77/342 (22%), Positives = 137/342 (40%), Gaps = 8/342 (2%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           TF  V       +R+ +     D M   G   +      L++ +CR GK  +A   L  V
Sbjct: 280 TFNDVIYGLCRLNRIHEGAKLVDRMLFRGFTPNDITYGVLMNGLCRVGKVDEAQVLLNKV 339

Query: 197 DGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLK-GC 255
                P++  + IL+ G+ K   +  A     + +I+ G  PD V  +++ +  L K G 
Sbjct: 340 P---TPNDVHFTILINGYVKSGRLDEANAFLYDKMIKNGCRPD-VFTFNTLIHGLCKKGL 395

Query: 256 DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHM 315
            G    V+ +  M   GC P +  +    +       L  A ++   M  + GF  +   
Sbjct: 396 MG--SAVDMVNDMSANGCTPNLITYTTLLDGFCKKNQLEEAGYVLNEMSAK-GFELNIMG 452

Query: 316 YNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
           YN+++   C + +   A+ +L EM   G  PDI T+N L   L K  +  +A  L+ +M+
Sbjct: 453 YNVLLRALCKNGKVPKALDMLGEMSDKGCKPDIFTFNTLIFGLCKVDRKEDALALYRDML 512

Query: 376 KNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLP 435
            +  + N       +  ++       A+K    M+   C     T N L+   C +    
Sbjct: 513 LDGVIANTVTYNTLIHAFLRGGAIQEALKLVNDMLFRGCPLDEITYNGLIKAFCKLGATE 572

Query: 436 EAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLK 477
           +A+     M  K +  +  + + L   L +  K     ELL+
Sbjct: 573 KALGLFDEMVRKDLVPSNISCNLLINGLCRVGKVCNALELLR 614



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 71/282 (25%), Positives = 116/282 (41%), Gaps = 20/282 (7%)

Query: 91  SAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLS----------LATFAS 140
           + Y LN+     A    ++++G N L  A+    K  K  ++L           + TF +
Sbjct: 434 AGYVLNEMS---AKGFELNIMGYNVLLRALCKNGKVPKALDMLGEMSDKGCKPDIFTFNT 490

Query: 141 VFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRI 200
           +       DR +DA+  +  M   G   +    N+L+ A  R G   +A + +  +  R 
Sbjct: 491 LIFGLCKVDRKEDALALYRDMLLDGVIANTVTYNTLIHAFLRGGAIQEALKLVNDMLFRG 550

Query: 201 KP-DNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIY 259
            P D  TY  L++ + K      A   F EMV +    P N+    + LI  L     + 
Sbjct: 551 CPLDEITYNGLIKAFCKLGATEKALGLFDEMVRK-DLVPSNISC--NLLINGLCRVGKVC 607

Query: 260 ETVNSLKRMMERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNM 318
             +  L+ M+ RG  P + T+  L    C  G N+R A  ++  +    G +PD   YN 
Sbjct: 608 NALELLRDMIHRGLAPDVVTYNSLINGLCKMG-NIREAFNLFNKLQAE-GIQPDAITYNT 665

Query: 319 MISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVK 360
           +I  +C +     A  LL   V N   P+  T+ IL    +K
Sbjct: 666 LICWHCRAGMFDDAYLLLLRGVENAFIPNDVTWYILVSNFIK 707



 Score = 44.3 bits (103), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 39/176 (22%), Positives = 68/176 (38%)

Query: 303 MVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGR 362
           M G     P    YN+++ +   +N    A  +  EM+  G  P + T+ ++ + L    
Sbjct: 163 MKGVYCCEPTFKSYNVVLDILVSANCPSVAANVFYEMLSKGVIPTVYTFGVVMKALCMVN 222

Query: 363 KLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGN 422
           ++  A  L  +M K+  V N    +  +      D    A+K  + M    C    +T N
Sbjct: 223 EVDNACSLLRDMTKHGCVPNSVVYQTLIHALSKRDRVNEALKLLEEMFLMGCLPDVDTFN 282

Query: 423 LLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKK 478
            ++ GLC ++ + E  K    M  +G          L   L +  K    + LL K
Sbjct: 283 DVIYGLCRLNRIHEGAKLVDRMLFRGFTPNDITYGVLMNGLCRVGKVDEAQVLLNK 338


>gi|302758218|ref|XP_002962532.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
 gi|300169393|gb|EFJ35995.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
          Length = 1031

 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 99/401 (24%), Positives = 159/401 (39%), Gaps = 43/401 (10%)

Query: 104 WNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVME 162
           + ++VD L K    D     ++ M K     S+ T+ ++        RV +A   F  M 
Sbjct: 439 YTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMV 498

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDG-RIKPDNDTYAILLEGWEKERDVA 221
              C  D  A  SL++  C+  +T +A    +VVDG R  P  D Y  L++G+ KE  + 
Sbjct: 499 SKDCTADALAYVSLVNGYCKSSRTKEAQ---KVVDGIRGTPYIDVYNALMDGYCKEGRLD 555

Query: 222 NAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFK 281
                F +M    G  P N+  Y+  +  L K    + E    L+ M   GC P +  + 
Sbjct: 556 EIPNVFEDMACR-GCVP-NIKTYNIVMDGLCKH-GKVDEAFPFLESMHSAGCVPDVVSYN 612

Query: 282 LAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVY 341
           +  +        + A  +   M+ + G  PD   YN +++ +C       A+ +L  M+ 
Sbjct: 613 IIIDGLFKASKPKEARQVLDQMI-QAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIK 671

Query: 342 NGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENV-------------LNHENCRA 388
            G  PD  TYN L   L +  +L +A  L +EM++N  V             L  E C  
Sbjct: 672 AGVDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCVVSACTTYNTIIDRLCKEGCLK 731

Query: 389 AVRVYMDSDDPY---VAIKFWKYMIENHCSD--LSETGNLL---------------VAGL 428
              + MD    +        +   I+  C +  L E  +LL               + GL
Sbjct: 732 QALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSEMDTLRDEVSYTTVIIGL 791

Query: 429 CDMHMLPEAVKYAKGM-AEKGIQVTPFALSKLKQILIKARK 468
           C    L  A K A+ M A KG+ +T    + L     K ++
Sbjct: 792 CKAEQLDRASKLAREMVAVKGLCITSHTFNLLIDAFTKTKR 832



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 104/414 (25%), Positives = 171/414 (41%), Gaps = 28/414 (6%)

Query: 81  PGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKN-------CLFDAMWDAIKSMKKENVL 133
           P  A+ FF W+  +   KHS +  N  +  L +N        +F+ M DA  +       
Sbjct: 106 PQTAIVFFVWAGDR-GFKHSTFTRNCFLQTLLENGSSDRIPAMFERMLDAGYAPDS---- 160

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
              T+  V  S    +++  A T  D  +  G K +V     L  A C+ G+  DA +  
Sbjct: 161 --YTYHLVIKSLCQMNQIDKAFTMLDKAKVRGFKPEVSVYTILTRAFCKTGRLKDALEIF 218

Query: 194 RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLK 253
           R +     PD   Y  ++ G  ++ D   A +   EM  E    PD V  Y+  +  L K
Sbjct: 219 RNIPS---PDAIAYNAIIHGHCRKNDCDGALEFLKEMN-ERKVAPD-VFTYNILIDGLCK 273

Query: 254 GCDGIYETVNSLKRMMERGCNP-GMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD 312
                 +    L  M++RG  P  +TF  +    C  G+  R    +  A++     RP 
Sbjct: 274 A-SKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSLL--AVMAERNCRPS 330

Query: 313 THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFN 372
              YN +IS  C       A  L+DE V +G  PD+ TY+IL + L K  ++ EA  L  
Sbjct: 331 CCTYNTLISGLCKQQNVDRAKDLVDEFVSSGFVPDVVTYSILADGLCKRGRIDEAFELVK 390

Query: 373 EMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMH 432
           EM       N       +     +     A +  + ++ +       T  ++V GLC   
Sbjct: 391 EMSGKGCTPNLVTYNTLIDGLCKASKTEKAYELLESLVSSGFVPDVVTYTIIVDGLCKEG 450

Query: 433 MLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARK--EA--VYEELLKK-CKA 481
            L +A+K  +GM ++G   +    + L + L +  +  EA  +++E++ K C A
Sbjct: 451 RLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMVSKDCTA 504



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 89/369 (24%), Positives = 155/369 (42%), Gaps = 15/369 (4%)

Query: 98  KHSPY--AWNLVVDLLGKNCLFDAMWDAIKSMK-KENVLSLATFASVFSSYVVADRVKDA 154
           + +PY   +N ++D   K    D + +  + M  +  V ++ T+  V        +V +A
Sbjct: 533 RGTPYIDVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEA 592

Query: 155 ITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEG 213
               + M   GC  DV + N ++  + +  K  +A Q L +++   I PD  TY  L+  
Sbjct: 593 FPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQ 652

Query: 214 WEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGC 273
           + KE    +A      M I+ G DPDNV  Y++ LI+ L   + + +    +  M+  GC
Sbjct: 653 FCKEERFDDAVGILKNM-IKAGVDPDNV-TYNT-LISGLSQTNRLGDAYELMHEMLRNGC 709

Query: 274 --NPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGA 331
             +   T+  +    C  G  L+ A  +   M G  G   +T  YN+ I   C       
Sbjct: 710 VVSACTTYNTIIDRLCKEG-CLKQALLLMDHMTGH-GVEANTVTYNIFIDRLCKEGRLDE 767

Query: 332 AMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENV-LNHENCRAAV 390
           A  LL EM       D  +Y  +   L K  +L  AS L  EMV  + + +        +
Sbjct: 768 ASSLLSEM---DTLRDEVSYTTVIIGLCKAEQLDRASKLAREMVAVKGLCITSHTFNLLI 824

Query: 391 RVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQ 450
             +  +     A+     M++  CS    T N+++  LC +  + +A +    MA +GI 
Sbjct: 825 DAFTKTKRLDEALTLLGLMVQRGCSPSVITYNMVITCLCKLDKVDKAWELFDEMAVRGIV 884

Query: 451 VTPFALSKL 459
            +  + + L
Sbjct: 885 ASSVSYTVL 893



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 65/281 (23%), Positives = 110/281 (39%), Gaps = 15/281 (5%)

Query: 104 WNLVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASVFSSYVVADRVKDAITTFDVME 162
           +N ++    K   FD     +K+M K  V     T+ ++ S     +R+ DA      M 
Sbjct: 646 YNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEML 705

Query: 163 QYGCK-HDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDV 220
           + GC        N+++  +C++G    A   +  + G  ++ +  TY I ++   KE  +
Sbjct: 706 RNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRL 765

Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDG-IYETVNSLKRMME--RGCNPGM 277
             A     EM        D +    SY   ++  C     +  + L R M   +G     
Sbjct: 766 DEASSLLSEM--------DTLRDEVSYTTVIIGLCKAEQLDRASKLAREMVAVKGLCITS 817

Query: 278 TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLD 337
             F L  +     + L  A  + G MV R G  P    YNM+I+  C  ++   A +L D
Sbjct: 818 HTFNLLIDAFTKTKRLDEALTLLGLMVQR-GCSPSVITYNMVITCLCKLDKVDKAWELFD 876

Query: 338 EMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNE 378
           EM   G      +Y +L   L    +  EA  +  EM  ++
Sbjct: 877 EMAVRGIVASSVSYTVLIYGLCGQGRGKEALQVLEEMASSD 917


>gi|357521289|ref|XP_003630933.1| Tau class glutathione S-transferase [Medicago truncatula]
 gi|355524955|gb|AET05409.1| Tau class glutathione S-transferase [Medicago truncatula]
          Length = 1320

 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 96/389 (24%), Positives = 162/389 (41%), Gaps = 10/389 (2%)

Query: 98  KHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAIT 156
           K   Y +N ++ LL KN         ++ M+K  V      + +V S +     V  A  
Sbjct: 309 KPDEYIYNNIILLLCKNGEVVEAEQLLRGMRKWGVFPDNVVYTTVISGFCKLGNVSAACK 368

Query: 157 TFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWE 215
            FD M +     D+    S++  IC+ GK ++A + F  ++   ++PD  TY  L++G+ 
Sbjct: 369 LFDEMRRKKIVPDIVTYTSVIHGICKSGKMVEAREMFNEMLVKGLEPDEVTYTALIDGYC 428

Query: 216 KERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMER-GCN 274
           K  ++  A     +MV + G  P NV  Y +    L K  +G  +  N L   M R G  
Sbjct: 429 KAGEMKEAFSVHNQMV-QKGLTP-NVVTYTALADGLCK--NGEIDVANELLHEMSRKGLQ 484

Query: 275 PGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAM 333
           P + T+  +    C  G   +  + +    +   GF PDT  Y  ++  YC   E   A 
Sbjct: 485 PNVYTYNTIVNGLCKIGNIEQTVKLM--EEMDLAGFYPDTITYTTLMDAYCKMGEMAKAH 542

Query: 334 KLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVY 393
           +LL  M+     P + T+N+L         L +   L   M++   + N     + ++ Y
Sbjct: 543 ELLRIMLNKRLQPTLVTFNVLMNGFCMSGMLEDGERLIEWMLEKGIMPNATTFNSLMKQY 602

Query: 394 MDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTP 453
              ++     + +K M +      S T N+L+ G C    + EA    K M EKG  VT 
Sbjct: 603 CIKNNMRATTEIYKAMHDRGVMPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKGYSVTA 662

Query: 454 FALSKLKQILIKARKEAVYEELLKKCKAH 482
                L +   K +K     +L ++ + H
Sbjct: 663 ATYDALIRGFYKRKKFVEARKLFEEMRKH 691



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 67/302 (22%), Positives = 109/302 (36%), Gaps = 42/302 (13%)

Query: 151 VKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAIL 210
           +K A+  F+   + G   +  + N +L  +C+ GK  +A   L  +  R           
Sbjct: 223 IKIAVKVFEEFPELGVCWNTVSCNIVLHCLCQLGKVREAHNLLVQMTDR----------- 271

Query: 211 LEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG-CDGIYETVNSLKRMM 269
                                   G  PD V            G  D + + V+ LK   
Sbjct: 272 ------------------------GNFPDVVSYGVVVSGYCRIGELDKVLKLVDELKG-- 305

Query: 270 ERGCNPGMTFF-KLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNE 328
            +G  P    +  +    C  G+ +   + + G  + + G  PD  +Y  +IS +C    
Sbjct: 306 -KGLKPDEYIYNNIILLLCKNGEVVEAEQLLRG--MRKWGVFPDNVVYTTVISGFCKLGN 362

Query: 329 TGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRA 388
             AA KL DEM      PDI TY  +   + K  K+ EA  +FNEM+      +     A
Sbjct: 363 VSAACKLFDEMRRKKIVPDIVTYTSVIHGICKSGKMVEAREMFNEMLVKGLEPDEVTYTA 422

Query: 389 AVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448
            +  Y  + +   A      M++   +    T   L  GLC    +  A +    M+ KG
Sbjct: 423 LIDGYCKAGEMKEAFSVHNQMVQKGLTPNVVTYTALADGLCKNGEIDVANELLHEMSRKG 482

Query: 449 IQ 450
           +Q
Sbjct: 483 LQ 484


>gi|449444222|ref|XP_004139874.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
 gi|449492651|ref|XP_004159061.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
          Length = 588

 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 91/343 (26%), Positives = 161/343 (46%), Gaps = 17/343 (4%)

Query: 127 MKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKT 186
           M++  +  + TF ++     V  R+ +A   F  M++ GC  +V    +L+  +C  G  
Sbjct: 153 MRRGYIPDVVTFTTLIKGLCVEHRIIEATKLFMRMQKLGCTPNVVTYGTLIKGLCALGNI 212

Query: 187 IDA--WQFLRVVDG-----RIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPD 239
             A  W    + D        +P+  +Y+I+++G  K  +   A   F EMV + G  P 
Sbjct: 213 NIALKWHQEMLNDTSPYVFNCRPNVISYSIIIDGLCKVGNWEEAICLFNEMV-DQGVQP- 270

Query: 240 NVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGM-TFFKLAFEECLTGQNLRGAEF 298
           NV  + S LI +L     + +    L+ M++ G  P + T+  L    CL G +L  A+ 
Sbjct: 271 NVVTF-SVLIDMLCKEGQVIKAKKLLEMMIQIGIVPNLFTYTSLIKGFCLVG-DLNSAKE 328

Query: 299 IWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFL 358
           ++ +M  + G+ PD   YNM+I+ YC + +   AMKL +EM++ G +PD++T  +L + L
Sbjct: 329 LFVSMPSK-GYEPDVISYNMLINGYCKTLKVEEAMKLFNEMLHVGMWPDVKTSGVLLKAL 387

Query: 359 VKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYV--AIKFWKYMIENHCSD 416
               K+ +A  LF   V     +  + C   + +     + Y+  A+K +  +   +   
Sbjct: 388 FLAGKVDDAKELFR--VIKPYAMPKDLCICCIFLDGLCKNGYIFEAMKLFNELESYNMKL 445

Query: 417 LSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKL 459
             ET   L+ GLC    L  A +  + + E+GIQ    A S +
Sbjct: 446 DIETFGCLIDGLCKAGKLETAWELFEKLYEEGIQPDAMAYSSM 488



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 76/334 (22%), Positives = 130/334 (38%), Gaps = 45/334 (13%)

Query: 88  FRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAM-----WDAIKSMKKENV-----LSLAT 137
            +W    LND  SPY +N   +++  + + D +     W+    +  E V      ++ T
Sbjct: 216 LKWHQEMLNDT-SPYVFNCRPNVISYSIIIDGLCKVGNWEEAICLFNEMVDQGVQPNVVT 274

Query: 138 FASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVV 196
           F+ +        +V  A    ++M Q G   ++F   SL+   C  G    A + F+ + 
Sbjct: 275 FSVLIDMLCKEGQVIKAKKLLEMMIQIGIVPNLFTYTSLIKGFCLVGDLNSAKELFVSMP 334

Query: 197 DGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG-C 255
               +PD  +Y +L+ G+ K   V  A K F EM + VG  PD   +        L G  
Sbjct: 335 SKGYEPDVISYNMLINGYCKTLKVEEAMKLFNEM-LHVGMWPDVKTSGVLLKALFLAGKV 393

Query: 256 DGIYETVNSLKR------------MMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAM 303
           D   E    +K              ++  C  G  F  +     L   N++     +G +
Sbjct: 394 DDAKELFRVIKPYAMPKDLCICCIFLDGLCKNGYIFEAMKLFNELESYNMKLDIETFGCL 453

Query: 304 V------GRI-------------GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGA 344
           +      G++             G +PD   Y+ MI  +C   +   A  L  +M  NG 
Sbjct: 454 IDGLCKAGKLETAWELFEKLYEEGIQPDAMAYSSMIHGFCKKGQVDKANILFQKMEENGC 513

Query: 345 FPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNE 378
            PD+ TY+IL     +  KL +   L + M++ +
Sbjct: 514 SPDLITYSILMRGFYESNKLEKVVQLLHRMIEKD 547



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 66/317 (20%), Positives = 120/317 (37%), Gaps = 34/317 (10%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           S+ +F  + +     +      + +  M   G   D+  LN L++ +C   +  +    +
Sbjct: 90  SIFSFNRLLAGLAKIEHYSQVFSLYKQMHLAGLWPDLLTLNILINCLCNVNRINEGLAAM 149

Query: 194 RVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
             +  R   PD  T+  L++G   E  +  A K F  M  ++G  P NV  Y     TL+
Sbjct: 150 AGIMRRGYIPDVVTFTTLIKGLCVEHRIIEATKLFMRMQ-KLGCTP-NVVTYG----TLI 203

Query: 253 KGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD 312
           KG   +     +LK   E   +     F                             RP+
Sbjct: 204 KGLCALGNINIALKWHQEMLNDTSPYVFNC---------------------------RPN 236

Query: 313 THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFN 372
              Y+++I   C       A+ L +EMV  G  P++ T+++L + L K  ++ +A  L  
Sbjct: 237 VISYSIIIDGLCKVGNWEEAICLFNEMVDQGVQPNVVTFSVLIDMLCKEGQVIKAKKLLE 296

Query: 373 EMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMH 432
            M++   V N     + ++ +    D   A + +  M          + N+L+ G C   
Sbjct: 297 MMIQIGIVPNLFTYTSLIKGFCLVGDLNSAKELFVSMPSKGYEPDVISYNMLINGYCKTL 356

Query: 433 MLPEAVKYAKGMAEKGI 449
            + EA+K    M   G+
Sbjct: 357 KVEEAMKLFNEMLHVGM 373



 Score = 45.8 bits (107), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 38/176 (21%), Positives = 76/176 (43%), Gaps = 6/176 (3%)

Query: 308 GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEA 367
           G  PD    N++I+  C  N     +  +  ++  G  PD+ T+  L + L    ++ EA
Sbjct: 121 GLWPDLLTLNILINCLCNVNRINEGLAAMAGIMRRGYIPDVVTFTTLIKGLCVEHRIIEA 180

Query: 368 SGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIEN------HCSDLSETG 421
           + LF  M K     N       ++      +  +A+K+ + M+ +      +C     + 
Sbjct: 181 TKLFMRMQKLGCTPNVVTYGTLIKGLCALGNINIALKWHQEMLNDTSPYVFNCRPNVISY 240

Query: 422 NLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLK 477
           ++++ GLC +    EA+     M ++G+Q      S L  +L K  +    ++LL+
Sbjct: 241 SIIIDGLCKVGNWEEAICLFNEMVDQGVQPNVVTFSVLIDMLCKEGQVIKAKKLLE 296



 Score = 42.0 bits (97), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 33/141 (23%), Positives = 66/141 (46%), Gaps = 4/141 (2%)

Query: 106 LVVDLLGKNC-LFDAMWDAIKSMKKENV-LSLATFASVFSSYVVADRVKDAITTFDVMEQ 163
           + +D L KN  +F+AM      ++  N+ L + TF  +      A +++ A   F+ + +
Sbjct: 417 IFLDGLCKNGYIFEAM-KLFNELESYNMKLDIETFGCLIDGLCKAGKLETAWELFEKLYE 475

Query: 164 YGCKHDVFALNSLLSAICRDGKTIDA-WQFLRVVDGRIKPDNDTYAILLEGWEKERDVAN 222
            G + D  A +S++   C+ G+   A   F ++ +    PD  TY+IL+ G+ +   +  
Sbjct: 476 EGIQPDAMAYSSMIHGFCKKGQVDKANILFQKMEENGCSPDLITYSILMRGFYESNKLEK 535

Query: 223 AKKTFGEMVIEVGWDPDNVPA 243
             +    M+ +  W  D + A
Sbjct: 536 VVQLLHRMIEKDVWPDDGIYA 556


>gi|6633829|gb|AAF19688.1|AC009519_22 F1N19.15 [Arabidopsis thaliana]
          Length = 1048

 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 107/483 (22%), Positives = 195/483 (40%), Gaps = 49/483 (10%)

Query: 14   SPDPHNKRKRSTFASHLDVPNLPPTIKTLCEIIANTPSPTVEDVLDKTLIRVSQETVEQV 73
            S   H+   R    + L            CE++ + P P++ D   + L  +++     +
Sbjct: 564  SGASHHHHYRERLRNELHCIKFDDAFSLFCEMLQSRPIPSIVD-FTRVLTVIAKMNKFDI 622

Query: 74   LKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL 133
            + + Y                L   H  Y++ +++    +          +  M K    
Sbjct: 623  VIYLYH-----------KMENLGISHDLYSFTILIHCFCRCSRLSLALALLGKMMKLGFR 671

Query: 134  -SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQF 192
             S+ T  S+ + +   +R ++A++  D M+ +G   +V   N++++ +C++    +A + 
Sbjct: 672  PSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRDLNNALEV 731

Query: 193  LRVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITL 251
               ++ + I+ D  TY  L+ G        +A +   +MV +   DP NV  + + + T 
Sbjct: 732  FYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMV-KRKIDP-NVIFFTALIDTF 789

Query: 252  LKGCDGIYETVNSLKRMMERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFR 310
            +K    + E  N  K M+ R   P + T+  L    C+ G  L  A++++  MV + G  
Sbjct: 790  VKE-GNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGC-LGDAKYMFDLMVSK-GCF 846

Query: 311  PDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGL 370
            PD   YN +I+ +C S      MKL  EM Y G   D  TYN L     +  KL  A  +
Sbjct: 847  PDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKV 906

Query: 371  FNEMVK--------NENVL-----NHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDL 417
            FN MV           N+L     N+     A+ +  D     + +    Y         
Sbjct: 907  FNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDIITY--------- 957

Query: 418  SETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLK 477
                N+++ GLC    L EA    + +  KG++  P A++ +  I    RK  +  E  K
Sbjct: 958  ----NIIIQGLCRTDKLKEAWCLFRSLTRKGVK--PDAIAYITMISGLCRK-GLQREADK 1010

Query: 478  KCK 480
             C+
Sbjct: 1011 LCR 1013



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 97/451 (21%), Positives = 182/451 (40%), Gaps = 69/451 (15%)

Query: 44  EIIANTPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYA 103
           E++ + P P++ D         +    E V+ FS           +   Y ++  H  Y+
Sbjct: 61  EMVHSQPLPSIVDFTRLLTATANLRRYETVIYFSQ----------KMELYGIS--HDLYS 108

Query: 104 WNLVVDLLGKNCLFDAMWDAI-KSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVME 162
           + +++    +          + K MK     S+ TF S+   + + +R+ DA +   +M 
Sbjct: 109 FTILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILMV 168

Query: 163 QYGCKHDVFALNSLLSAICRDGKT-----------------------------------I 187
           + G + +V   N+L+  +C++G+                                     
Sbjct: 169 KSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWS 228

Query: 188 DAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDS 246
           DA + LR +  R I PD  T+  L++ + K+ ++  A++ + EM I+   DP+NV  Y+S
Sbjct: 229 DAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEM-IQSSVDPNNV-TYNS 286

Query: 247 YLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGR 306
            +I  L     +Y+   +   M  +GC P +  +          + +     ++  M   
Sbjct: 287 -IINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCE 345

Query: 307 IGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWE 366
            GF  D   YN +I  YC   +   A+ +   MV     PDI T+ IL   L    ++  
Sbjct: 346 -GFNADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPDIITHCILLHGLCVNGEIES 404

Query: 367 ASGLFNEMVKNE--------NVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLS 418
           A   F++M ++E        N++ H  C+A      D  +    + F +  +E    D +
Sbjct: 405 ALVKFDDMRESEKYIGIVAYNIMIHGLCKA------DKVEKAWEL-FCRLPVEGVKPD-A 456

Query: 419 ETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
            T  +++ GLC      EA +  + M E+GI
Sbjct: 457 RTYTIMILGLCKNGPRREADELIRRMKEEGI 487



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/229 (23%), Positives = 102/229 (44%), Gaps = 9/229 (3%)

Query: 127  MKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKT 186
            +++  V ++ T+ S+ + + +   + DA   FD+M   GC  DV   N+L++  C+  + 
Sbjct: 806  IRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKGCFPDVVTYNTLITGFCKSKRV 865

Query: 187  IDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYD 245
             D  + F  +    +  D  TY  L+ G+ +   +  A+K F  MV + G  PD V    
Sbjct: 866  EDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMV-DCGVSPDIV---- 920

Query: 246  SYLITLLKGCDG--IYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAM 303
            +Y I L   C+   I + +  ++ + +   +  +  + +  +       L+ A  ++ ++
Sbjct: 921  TYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDIITYNIIIQGLCRTDKLKEAWCLFRSL 980

Query: 304  VGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYN 352
              R G +PD   Y  MIS  C       A KL   M  +G  P  + Y+
Sbjct: 981  T-RKGVKPDAIAYITMISGLCRKGLQREADKLCRRMKEDGFMPSERIYD 1028


>gi|115472343|ref|NP_001059770.1| Os07g0513200 [Oryza sativa Japonica Group]
 gi|27818007|dbj|BAC55770.1| putative CRP1 protein [Oryza sativa Japonica Group]
 gi|50509504|dbj|BAD31185.1| putative CRP1 protein [Oryza sativa Japonica Group]
 gi|113611306|dbj|BAF21684.1| Os07g0513200 [Oryza sativa Japonica Group]
 gi|215715304|dbj|BAG95055.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 754

 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 95/391 (24%), Positives = 166/391 (42%), Gaps = 22/391 (5%)

Query: 100 SPYAWNLVVDLLGKNCLFDAMWDAIKSMK----KENVLSLATFASVFSSYVVADRVKDAI 155
           +P A+  V+ LL   C    + DA++ ++       VL  A F +V S +     +  A 
Sbjct: 319 NPVAYTSVIALL---CDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAAR 375

Query: 156 TTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGW 214
             FD M++ G   D     +L++ +CR G+  +A + L+ ++ + +  D  TY +L++G+
Sbjct: 376 NWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGY 435

Query: 215 EKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCN 274
            K   +  A     +MV +    P NV  Y +    L K  D     V +   ++   C+
Sbjct: 436 CKVGKMTEAFLVHNKMV-QKRVTP-NVVTYTALSDGLCKQGD-----VCAANELLHEMCS 488

Query: 275 PGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRI-----GFRPDTHMYNMMISLYCYSNET 329
            G+      +   + G  L  A  +  AM   I     G +PD + Y  +I   C S E 
Sbjct: 489 KGLELNIFTYNSLING--LCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKEL 546

Query: 330 GAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAA 389
             A  LL EM+  G  P I TYN+L        ++     L   M++     N     + 
Sbjct: 547 DRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSL 606

Query: 390 VRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
           ++ Y    +     + +K M+         T N+L+ G C    + EA+ +   M EKG 
Sbjct: 607 MKQYCIEKNMKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEKGF 666

Query: 450 QVTPFALSKLKQILIKARKEAVYEELLKKCK 480
           ++T  + + L ++L K +K      L +K +
Sbjct: 667 RLTASSYNALIRLLNKKKKFTEARRLFEKMR 697



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 84/316 (26%), Positives = 131/316 (41%), Gaps = 24/316 (7%)

Query: 174 NSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIE 233
           N LL A+C  G+  DA Q    +     PD  TY I++ G+    ++  A K   EM   
Sbjct: 257 NILLKALCTAGRIKDAHQLFDEMAS--PPDVVTYGIMVHGYCTLSELETAIKLLSEMAAR 314

Query: 234 VGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNL 293
            G + + V AY S +I LL  CD     V+   R++E     G+      F   ++G   
Sbjct: 315 -GLELNPV-AYTS-VIALL--CD--EGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCR 367

Query: 294 RG---AEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQT 350
           +G   A   W   + + G   D   Y  +I+  C + E   A ++L EM   G   D  T
Sbjct: 368 KGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVT 427

Query: 351 YNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMI 410
           Y +L +   K  K+ EA  + N+MV+     N     A         D   A +    M 
Sbjct: 428 YTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEM- 486

Query: 411 ENHCSDLSE----TGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKA 466
              CS   E    T N L+ GLC    L +A++    M E G++   +  + +   L ++
Sbjct: 487 ---CSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQS 543

Query: 467 ----RKEAVYEELLKK 478
               R  ++ +E+L K
Sbjct: 544 KELDRAHSLLQEMLDK 559



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/247 (22%), Positives = 106/247 (42%), Gaps = 9/247 (3%)

Query: 133 LSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQF 192
           L++ T+ S+ +    A  ++ A+ T   M++ G K DV+   +++ A+C+  +   A   
Sbjct: 493 LNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSL 552

Query: 193 LR-VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITL 251
           L+ ++D  IKP   TY +L+ G+     V   K+   E ++E    P N   Y+S +   
Sbjct: 553 LQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLL-EWMLEKNIHP-NTTTYNSLMK-- 608

Query: 252 LKGC--DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGF 309
            + C    +  T    K M+ +   P    + +  +     +N++ A +    M+ + GF
Sbjct: 609 -QYCIEKNMKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEK-GF 666

Query: 310 RPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASG 369
           R     YN +I L     +   A +L ++M       +   YN   +       L     
Sbjct: 667 RLTASSYNALIRLLNKKKKFTEARRLFEKMRKERLTAEPDVYNFYIDLSFNEDNLESTLA 726

Query: 370 LFNEMVK 376
           L +E+V+
Sbjct: 727 LCDELVE 733


>gi|293330959|ref|NP_001169662.1| uncharacterized protein LOC100383543 [Zea mays]
 gi|224030695|gb|ACN34423.1| unknown [Zea mays]
 gi|414870691|tpg|DAA49248.1| TPA: hypothetical protein ZEAMMB73_502001 [Zea mays]
          Length = 756

 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 79/319 (24%), Positives = 148/319 (46%), Gaps = 13/319 (4%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-- 194
           TF ++   ++    ++ A+     M + GC      +N L++  C+ G+  DA  +++  
Sbjct: 232 TFTTLMQGFIEEGSIEAALRVKTKMMETGCSPTRVTVNVLINGYCKMGRVEDALGYIQKE 291

Query: 195 VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG 254
           + DG  +PD  TY   +    +   V++A K   +++++ G DPD V  Y++ +  L K 
Sbjct: 292 IADG-FEPDQVTYNTFVHCLCQNGHVSHALKVM-DLMLQEGHDPD-VFTYNTVINCLSKN 348

Query: 255 CDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTH 314
            + + E    + +M++RGC P  T F        +   L  A  +   +  + G  PD +
Sbjct: 349 GE-LDEAKGIVNQMVDRGCLPDTTTFNTLIVALCSQNRLEEALDLARELTVK-GLSPDVY 406

Query: 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
            +N++I+  C   +    ++L +EM  +G  PD  TYNIL + L    KL  A  L  EM
Sbjct: 407 TFNILINALCKVGDPHLGIRLFEEMKSSGCAPDEVTYNILIDHLCSMGKLVNALDLLKEM 466

Query: 375 VKN---ENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDM 431
             N    + + +     A+   M  ++   A + +  M  +  S  + T N L+ GLC  
Sbjct: 467 ESNGCPRSTVTYNTIIDALCKQMRIEE---AEEVFDQMDAHGISRSAVTFNTLIDGLCKA 523

Query: 432 HMLPEAVKYAKGMAEKGIQ 450
             + +A +  + M ++G+Q
Sbjct: 524 KRIDDATELIEQMVKEGLQ 542



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 82/356 (23%), Positives = 146/356 (41%), Gaps = 21/356 (5%)

Query: 136 ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRV 195
           A +  + +      R+K   + ++ M   G + DV  LN+L+ A+CR  +   A   L  
Sbjct: 161 AVYNHLLNVLAEGSRMKLLESVYNEMTDRGIQPDVVTLNTLIKALCRAHQVRTAVLMLEE 220

Query: 196 VDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG 254
           +    + PD  T+  L++G+ +E  +  A +   +M +E G  P  V    + LI     
Sbjct: 221 MSSHAVAPDETTFTTLMQGFIEEGSIEAALRVKTKM-METGCSPTRVTV--NVLINGYCK 277

Query: 255 CDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTH 314
              + + +  +++ +  G  P    +   F  CL              ++ + G  PD  
Sbjct: 278 MGRVEDALGYIQKEIADGFEPDQVTYN-TFVHCLCQNGHVSHALKVMDLMLQEGHDPDVF 336

Query: 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
            YN +I+    + E   A  ++++MV  G  PD  T+N L   L    +L EA  L  E+
Sbjct: 337 TYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALCSQNRLEEALDLAREL 396

Query: 375 --------VKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVA 426
                   V   N+L +  C+          DP++ I+ ++ M  + C+    T N+L+ 
Sbjct: 397 TVKGLSPDVYTFNILINALCKVG--------DPHLGIRLFEEMKSSGCAPDEVTYNILID 448

Query: 427 GLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKCKAH 482
            LC M  L  A+   K M   G   +    + +   L K  +    EE+  +  AH
Sbjct: 449 HLCSMGKLVNALDLLKEMESNGCPRSTVTYNTIIDALCKQMRIEEAEEVFDQMDAH 504



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 100/441 (22%), Positives = 173/441 (39%), Gaps = 13/441 (2%)

Query: 31  DVPNLPPTIKTLCEI-IANTPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFR 89
           DV  L   IK LC      T    +E++    +     ET    L   +   G      R
Sbjct: 194 DVVTLNTLIKALCRAHQVRTAVLMLEEMSSHAV--APDETTFTTLMQGFIEEGSIEAALR 251

Query: 90  WSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVA- 148
                +    SP    + V L+   C    + DA+  ++KE           ++++V   
Sbjct: 252 VKTKMMETGCSPTRVTVNV-LINGYCKMGRVEDALGYIQKEIADGFEPDQVTYNTFVHCL 310

Query: 149 ---DRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDN 204
                V  A+   D+M Q G   DVF  N++++ + ++G+  +A   + ++VD    PD 
Sbjct: 311 CQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDT 370

Query: 205 DTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNS 264
            T+  L+     +  +  A     E+ ++ G  PD V  ++  +  L K  D  +  +  
Sbjct: 371 TTFNTLIVALCSQNRLEEALDLARELTVK-GLSPD-VYTFNILINALCKVGDP-HLGIRL 427

Query: 265 LKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYC 324
            + M   GC P    + +  +   +   L  A  +   M    G    T  YN +I   C
Sbjct: 428 FEEMKSSGCAPDEVTYNILIDHLCSMGKLVNALDLLKEMESN-GCPRSTVTYNTIIDALC 486

Query: 325 YSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHE 384
                  A ++ D+M  +G      T+N L + L K +++ +A+ L  +MVK     ++ 
Sbjct: 487 KQMRIEEAEEVFDQMDAHGISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPSNI 546

Query: 385 NCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGM 444
              + +  Y    D   A    + M  N       T   L+ GLC       A+K  +GM
Sbjct: 547 TYNSILTHYCKQGDLKKAADILETMTANGFEIDVVTYGTLINGLCKAGRTQVALKLLRGM 606

Query: 445 AEKGIQVTPFALSKLKQILIK 465
             KGI+ TP A + + Q L +
Sbjct: 607 RIKGIRPTPKAYNPVIQSLFR 627



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 74/325 (22%), Positives = 128/325 (39%), Gaps = 51/325 (15%)

Query: 95  LNDKHSP--YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRV 151
           L + H P  + +N V++ L KN   D     +  M     L    TF ++  +    +R+
Sbjct: 327 LQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALCSQNRL 386

Query: 152 KDA-----------------------------------ITTFDVMEQYGCKHDVFALNSL 176
           ++A                                   I  F+ M+  GC  D    N L
Sbjct: 387 EEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCAPDEVTYNIL 446

Query: 177 LSAICRDGKTIDAWQFLRVVDGRIKPDND-TYAILLEGWEKERDVANAKKTFGEMVIEVG 235
           +  +C  GK ++A   L+ ++    P +  TY  +++   K+  +  A++ F +M     
Sbjct: 447 IDHLCSMGKLVNALDLLKEMESNGCPRSTVTYNTIIDALCKQMRIEEAEEVFDQM----- 501

Query: 236 WDPDNVPAYDSYLITLLKG-CDG--IYETVNSLKRMMERGCNPG-MTFFKLAFEECLTGQ 291
            D   +        TL+ G C    I +    +++M++ G  P  +T+  +    C  G 
Sbjct: 502 -DAHGISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPSNITYNSILTHYCKQG- 559

Query: 292 NLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTY 351
           +L+ A  I   M    GF  D   Y  +I+  C +  T  A+KLL  M   G  P  + Y
Sbjct: 560 DLKKAADILETMTAN-GFEIDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGIRPTPKAY 618

Query: 352 NILFEFLVKGRKLWEASGLFNEMVK 376
           N + + L +   L +A  LF EM +
Sbjct: 619 NPVIQSLFRRNNLRDALSLFREMTE 643



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 60/229 (26%), Positives = 98/229 (42%), Gaps = 8/229 (3%)

Query: 150 RVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYA 208
           ++ +A+     ME  GC       N+++ A+C+  +  +A +    +D   I     T+ 
Sbjct: 455 KLVNALDLLKEMESNGCPRSTVTYNTIIDALCKQMRIEEAEEVFDQMDAHGISRSAVTFN 514

Query: 209 ILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRM 268
            L++G  K + + +A +   +MV E G  P N+  Y+S L    K  D + +  + L+ M
Sbjct: 515 TLIDGLCKAKRIDDATELIEQMVKE-GLQPSNI-TYNSILTHYCKQGD-LKKAADILETM 571

Query: 269 MERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSN 327
              G    + T+  L    C  G+     + + G  +   G RP    YN +I      N
Sbjct: 572 TANGFEIDVVTYGTLINGLCKAGRTQVALKLLRGMRIK--GIRPTPKAYNPVIQSLFRRN 629

Query: 328 ETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRK-LWEASGLFNEMV 375
               A+ L  EM   G  PD  TY I+F  L +G   + EA     EMV
Sbjct: 630 NLRDALSLFREMTEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFLVEMV 678



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/202 (22%), Positives = 84/202 (41%), Gaps = 9/202 (4%)

Query: 254 GCDGIYETVNSLKRMMER-GCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD 312
           G  G ++ +  L R M R G   G    +   E     +    A  +    +   G + D
Sbjct: 100 GTAGAFDLMEGLVREMRREGHEAGAGVVRSFVESYARLRRFDDAVDLVRNQLNTFGVQAD 159

Query: 313 THMYNMMISLYCYSNETGAAMKLLD----EMVYNGAFPDIQTYNILFEFLVKGRKLWEAS 368
           T +YN ++++       G+ MKLL+    EM   G  PD+ T N L + L +  ++  A 
Sbjct: 160 TAVYNHLLNVLA----EGSRMKLLESVYNEMTDRGIQPDVVTLNTLIKALCRAHQVRTAV 215

Query: 369 GLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGL 428
            +  EM  +    +       ++ +++      A++    M+E  CS    T N+L+ G 
Sbjct: 216 LMLEEMSSHAVAPDETTFTTLMQGFIEEGSIEAALRVKTKMMETGCSPTRVTVNVLINGY 275

Query: 429 CDMHMLPEAVKYAKGMAEKGIQ 450
           C M  + +A+ Y +     G +
Sbjct: 276 CKMGRVEDALGYIQKEIADGFE 297


>gi|449442339|ref|XP_004138939.1| PREDICTED: pentatricopeptide repeat-containing protein At1g73400,
           mitochondrial-like [Cucumis sativus]
          Length = 559

 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 95/412 (23%), Positives = 181/412 (43%), Gaps = 18/412 (4%)

Query: 54  VEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLG- 112
           +E  LD+  + ++ + V  +L         A +FF W+A Q N  H P  +N ++D+L  
Sbjct: 103 MEGALDQVGVYLTTDLVADILHRLRFDEKLAFRFFTWAARQENYSHEPRVYNEMIDILSS 162

Query: 113 ---KNCLFDAMWDAIKSMKK--ENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCK 167
              K   F  + D +  MK+  +N + +     +  +Y   D+    +  F   ++   K
Sbjct: 163 TRYKVKQFRIVCDLLDYMKRNDKNTVPVEVLFGILRNY--TDKYLTCLQKFAKKKKVIVK 220

Query: 168 H--DVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKK 225
              ++ A N LL A+C+     DA   L+ V  ++KPD +TY I+  GW + R+     +
Sbjct: 221 RQPEINAFNLLLDALCKCSLVEDAEALLKKVKKKLKPDANTYNIMFFGWCRVRNPGRGMR 280

Query: 226 TFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGC---NPGMTFFKL 282
              EM IE+G+DPDN   Y++ + +  K    + E     + M  +G    +P    + +
Sbjct: 281 VLEEM-IELGFDPDNF-TYNTAIASFCKA-GMLKEACELFEFMRTKGSALSSPTAKTYAI 337

Query: 283 AFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYN 342
                +    +    F +   + + G  PD   Y  MI   C + +   A   L+EM   
Sbjct: 338 MIVALVNNGRMEEC-FKFLEYMIKSGCLPDVSTYKEMIEGICVAGKVQEAYMFLEEMGKK 396

Query: 343 GAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVA 402
           G  PDI TYN   + L   +   +A    + M++   + + +     + ++ + +D   A
Sbjct: 397 GYPPDIVTYNCFLKVLCDNKMSDDALRHCDRMIEVGCLPSVQTYNMLISMFFEMNDHNGA 456

Query: 403 IKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPF 454
            + W  M    C+   ++  +++ GL   + + +A    + +  KG+++ PF
Sbjct: 457 FQIWLEMDRYGCTRDVDSYCIMIEGLFGCNKVGDACLLLEEVVNKGMKL-PF 507


>gi|356547476|ref|XP_003542138.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80880,
           mitochondrial-like [Glycine max]
          Length = 504

 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 97/442 (21%), Positives = 188/442 (42%), Gaps = 27/442 (6%)

Query: 26  FASHLDVPNLPPTIKTLCEIIANTPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAV 85
           F  +LD P LP  ++ L ++  ++P     + L  +  + +++ +   +        PA+
Sbjct: 52  FNFNLDDPTLPKFLELLKKVAHSSPQA---EGLHLSGFQANRDLICSAIWALREEWKPAL 108

Query: 86  KFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSY 145
             F+W+ +  ++K      NL++ +L  +  F   W  I+ M + ++ +      +   Y
Sbjct: 109 LAFKWNCHGNDEK----VCNLMIWVLTTHGKFSTAWCIIRDMHRSSLSTRQAMLIMIDRY 164

Query: 146 VVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDND 205
             A+    AI TF+ M+++    D  A ++LL+A+ + G   +A +F+ V       + +
Sbjct: 165 ASANNSAKAIQTFNFMDKFRLTPDQEAFHALLTALSKYGNVEEAEEFMLVNKKLFPLNTE 224

Query: 206 TYAILLEGW-EKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNS 264
           ++ I+L GW    +DV  AK+ + EM  +    P N  +Y SY+I+       +++++  
Sbjct: 225 SFNIILNGWCNITKDVYEAKRVWREMS-KYCITP-NATSY-SYMISCFSNEGNLFDSLRL 281

Query: 265 LKRMMERGCNPGMTFFK-----LAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMM 319
             +M +RG  PG+  +      L  E CL  + LR  +      +   G +P +  +N M
Sbjct: 282 YDQMKKRGWIPGIEIYNSLVYVLTHENCLK-EALRTID-----KLKEQGLQPGSATFNSM 335

Query: 320 ISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNEN 379
           I   C + +   A  + + MV     P  +TY+  FE    G            M  +  
Sbjct: 336 ILPLCEAGKLAGARIIFNTMVEENVSPTTETYHAFFE----GTDYQGTLEFLTRMKDSGL 391

Query: 380 VLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVK 439
             N ++    +  ++    P  A+KFW  M             ++V GL       +A  
Sbjct: 392 GPNKDSFVIILAKFLKLKQPVNALKFWTEMKTYDVLPSCVHYRIMVEGLVTCRWFVKARD 451

Query: 440 YAKGMAEKGIQVTPFALSKLKQ 461
           + + M   G    P  L++L Q
Sbjct: 452 FYEEMVSNGCSADP-KLNRLFQ 472


>gi|218199706|gb|EEC82133.1| hypothetical protein OsI_26175 [Oryza sativa Indica Group]
          Length = 799

 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 95/391 (24%), Positives = 166/391 (42%), Gaps = 22/391 (5%)

Query: 100 SPYAWNLVVDLLGKNCLFDAMWDAIKSMK----KENVLSLATFASVFSSYVVADRVKDAI 155
           +P A+  V+ LL   C    + DA++ ++       VL  A F +V S +     +  A 
Sbjct: 319 NPVAYTSVIALL---CDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAAR 375

Query: 156 TTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGW 214
             FD M++ G   D     +L++ +CR G+  +A + L+ ++ + +  D  TY +L++G+
Sbjct: 376 NWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGY 435

Query: 215 EKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCN 274
            K   +  A     +MV +    P NV  Y +    L K  D     V +   ++   C+
Sbjct: 436 CKVGKMTEAFLVHNKMV-QKRVTP-NVVTYTALSDGLCKQGD-----VCAANELLHEMCS 488

Query: 275 PGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRI-----GFRPDTHMYNMMISLYCYSNET 329
            G+      +   + G  L  A  +  AM   I     G +PD + Y  +I   C S E 
Sbjct: 489 KGLELNIFTYNSLING--LCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKEL 546

Query: 330 GAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAA 389
             A  LL EM+  G  P I TYN+L        ++     L   M++     N     + 
Sbjct: 547 DRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSL 606

Query: 390 VRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
           ++ Y    +     + +K M+         T N+L+ G C    + EA+ +   M EKG 
Sbjct: 607 MKQYCIEKNMKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEKGF 666

Query: 450 QVTPFALSKLKQILIKARKEAVYEELLKKCK 480
           ++T  + + L ++L K +K      L +K +
Sbjct: 667 RLTASSYNALIRLLNKKKKFTEARRLFEKMR 697



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 81/312 (25%), Positives = 128/312 (41%), Gaps = 16/312 (5%)

Query: 174 NSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIE 233
           N LL A+C  G+  DA Q    +     PD  TY I++ G+    ++  A K   EM   
Sbjct: 257 NILLKALCTAGRIKDAHQLFDEMAS--PPDVVTYGIMVHGYCTLSELETAIKLLSEMAAR 314

Query: 234 VGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNL 293
            G + + V AY S +I LL  CD     V+   R++E     G+      F   ++G   
Sbjct: 315 -GLELNPV-AYTS-VIALL--CDE--GQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCR 367

Query: 294 RG---AEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQT 350
           +G   A   W   + + G   D   Y  +I+  C + E   A ++L EM   G   D  T
Sbjct: 368 KGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVT 427

Query: 351 YNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMI 410
           Y +L +   K  K+ EA  + N+MV+     N     A         D   A +    M 
Sbjct: 428 YTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMC 487

Query: 411 ENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKA---- 466
                    T N L+ GLC    L +A++    M E G++   +  + +   L ++    
Sbjct: 488 SKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELD 547

Query: 467 RKEAVYEELLKK 478
           R  ++ +E+L K
Sbjct: 548 RAHSLLQEMLDK 559



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/247 (22%), Positives = 107/247 (43%), Gaps = 9/247 (3%)

Query: 133 LSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQF 192
           L++ T+ S+ +    A  ++ A+ T   M++ G K DV+   +++ A+C+  +   A   
Sbjct: 493 LNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSL 552

Query: 193 LR-VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITL 251
           L+ ++D  IKP   TY +L+ G+     V   K+   E ++E    P N   Y+S +   
Sbjct: 553 LQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLL-EWMLEKNIHP-NTTTYNSLMK-- 608

Query: 252 LKGC--DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGF 309
            + C    +  T    K M+ +   P    + +  +     +N++ A +    M+ + GF
Sbjct: 609 -QYCIEKNMKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEK-GF 666

Query: 310 RPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASG 369
           R     YN +I L     +   A +L ++M  +    +   YN   +       L     
Sbjct: 667 RLTASSYNALIRLLNKKKKFTEARRLFEKMRKDRLTAEPDVYNFYIDLSFNEDNLESTLA 726

Query: 370 LFNEMVK 376
           L +E+V+
Sbjct: 727 LCDELVE 733


>gi|124360979|gb|ABN08951.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 511

 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 118/511 (23%), Positives = 219/511 (42%), Gaps = 59/511 (11%)

Query: 4   NDKRRHHDDPSPDPHNKRKRSTFASHLDVP--NLPPTIKTLCEIIANTPSPTVEDVLDKT 61
           N+ + H   P P  +       F +H      NLP  I T+  II N P P  +  L  T
Sbjct: 8   NNLKNHIHTPKPASY------IFNNHFTTQSKNLP-NIDTITTIINNHPFP--QKPLHPT 58

Query: 62  LIR-------VSQETVEQVLK---FSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLL 111
           L+        +    ++ +L     S+S+   A++FF ++    +      +  + + +L
Sbjct: 59  LLHYFPPTTPIPSSLIQNILIRLFASHSNGLKALEFFNFTIKNTHTNPCASSLEITLHIL 118

Query: 112 GKNCLFDAMWDAIKSMKKE--NVLSLATFASVFSSYVVADRVKDAITTFDVMEQ---YGC 166
            +   FD  W  +  +      +L+L     + +        ++ +  F  ME+    G 
Sbjct: 119 TRMRYFDKAWSLLIQIANTYPGLLTLKAMNIMLAKIAKYKSFEETLDGFRRMEEEVFVGR 178

Query: 167 KHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDVANAKK 225
           +      N LL       +  +A   F+R VD R K D  +  ILL G+++  DV + + 
Sbjct: 179 EFGSDEFNVLLKVFATQRQMKEARSVFVRFVD-RFKADTKSMNILLLGFKETGDVTSVEL 237

Query: 226 TFGEMVIEVGWDPDNVP---AYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKL 282
            + EMV + G+ PD+V      D+Y     KG  G  + +  L+ M  R        F +
Sbjct: 238 FYHEMV-KRGFKPDSVSFGIRIDAYC---KKGRFG--DALRLLEEMESRK-------FVV 284

Query: 283 AFEECLTGQNLRGAEFIWG-----AMVGRIGFR---PDTHMYNMMISLYCYSNETGAAMK 334
           + E   T   + GA  +        +   I  R    D+ +YN +I+    + +  +A+ 
Sbjct: 285 SVETITTL--IHGAGLVQNPGKAWQLFNEIPLRNLVVDSGVYNALITTLVRNRDVVSALS 342

Query: 335 LLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYM 394
           L+D M+     PD  TY+ +F  L+K R +   S L+ +M K + V         ++ + 
Sbjct: 343 LMDGMIEKQILPDGVTYHTIFLGLMKSRGIEGVSELYQKMTKRKFVPKTRTVVVLMKYFC 402

Query: 395 DSDDPYVAIKFWKYMIE-NHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTP 453
            +    +++  W Y++E  HC   +   +LLV GLC   ++ EA   +K   E+G  ++ 
Sbjct: 403 HNSRLDLSLSLWNYLVEKGHCPH-AHALDLLVTGLCSRGLVQEAFSCSKQTLERGRYISS 461

Query: 454 FALSKLKQILIKAR---KEAVYEELLKKCKA 481
            A   L+++L ++R   K    ++++KK ++
Sbjct: 462 TAFLMLERLLKQSRDVDKLKELDQMIKKLRS 492


>gi|222613072|gb|EEE51204.1| hypothetical protein OsJ_32019 [Oryza sativa Japonica Group]
          Length = 615

 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 87/354 (24%), Positives = 159/354 (44%), Gaps = 62/354 (17%)

Query: 117 FDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNS 175
            D   + + +M K  V+    T+ S+   Y  + + K+AI T   M   G + +V   +S
Sbjct: 225 MDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSS 284

Query: 176 LLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEV 234
           L++ +C++G++ +A +    +  R ++PD  TY  LL+G  KE  V  ++K F ++++ +
Sbjct: 285 LMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGHCKEGRVIESEKLF-DLMVRI 343

Query: 235 GWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLR 294
           G  PD +  Y+    TL+ GC                               CL G+ + 
Sbjct: 344 GVKPD-IITYN----TLIDGC-------------------------------CLAGK-MD 366

Query: 295 GAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNIL 354
            A  +  +MV  +G +PD   Y  +I+ YC  +    A+ L  EMV +G  P+I TYNI+
Sbjct: 367 EATKLLASMVS-VGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNII 425

Query: 355 FEFLVKGRKLWEASGLFNEMVKNE--------NVLNHENCR-----AAVRVYMD--SDDP 399
            + L   R+   A  L+  + K+         N++ H  C+      A+R++ +    D 
Sbjct: 426 LQGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDL 485

Query: 400 YVAIKFWKYMIEN--HCSDLSETGNLLVAGLCDMHMLPEAVKY---AKGMAEKG 448
            +  + +  MI     C  + E  +L  A   +  ++P+   Y   A+ + E+G
Sbjct: 486 QLETRTFNIMIGALLKCGRMDEAKDLFAAHSAN-GLVPDVRTYSLMAENLIEQG 538



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 102/402 (25%), Positives = 165/402 (41%), Gaps = 50/402 (12%)

Query: 81  PGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCL-------FDAMWDAIKSMKKENVL 133
           P  AV  +   A     K +P      + L+G  C        F A+ + +K   + + +
Sbjct: 70  PAAAVSRYNRMARAGAGKVTPTVHTYAI-LIGCCCRAGRLDLGFAALGNVVKKGFRVDAI 128

Query: 134 SLATFASVFSSYVVADRVKDAI-TTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQF 192
              TF  +        R  DA+      M + GC  DVF+ N+LL  +C + ++ +A + 
Sbjct: 129 ---TFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALEL 185

Query: 193 LRVV----DGRIKPDNDTYAILLEGWEKE----RDVANAKKTFGEMV---IEVGWDPDNV 241
           L ++     G   PD  +Y  +L G+ KE    +  A A     E++   ++ G  PD +
Sbjct: 186 LHMMADDRGGGSPPDVVSYNTVLNGFFKEGIQTKLTAQAMDKAMEVLNTMVKNGVMPDCM 245

Query: 242 PAYDSYLITLLKG-CDGIY--ETVNSLKRMMERGCNPG-MTFFKLAFEECLTGQNLRGAE 297
             Y+S    +L G C      E + +LK+M   G  P  +T+  L    C  G++   A 
Sbjct: 246 -TYNS----ILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTE-AR 299

Query: 298 FIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEF 357
            I+ +M  R G  PD   Y  ++  +C       + KL D MV  G  PDI TYN L + 
Sbjct: 300 KIFDSMTKR-GLEPDIATYRTLLQGHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDG 358

Query: 358 LVKGRKLWEASGLFNEMVK--------NENVLNHENCRAAVRVYMDSDDPYVAIKFWKYM 409
                K+ EA+ L   MV             L +  CR +    MD      A+  +K M
Sbjct: 359 CCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVS---RMDD-----ALALFKEM 410

Query: 410 IENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQV 451
           + +  S    T N+++ GL        A +    + + G Q+
Sbjct: 411 VSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQL 452



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 70/298 (23%), Positives = 123/298 (41%), Gaps = 17/298 (5%)

Query: 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL- 193
           +AT+ ++   +    RV ++   FD+M + G K D+   N+L+   C  GK  +A + L 
Sbjct: 314 IATYRTLLQGHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLA 373

Query: 194 RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLK 253
            +V   +KPD  TY  L+ G+ +   + +A   F EMV   G  P N+  Y+  L     
Sbjct: 374 SMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMV-SSGVSP-NIITYNIIL----- 426

Query: 254 GCDGIYETVNSLK------RMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRI 307
              G++ T  +         + + G    ++ + +     L   NL          +   
Sbjct: 427 --QGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHG-LCKNNLTDEALRMFQNLCLT 483

Query: 308 GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEA 367
             + +T  +N+MI           A  L      NG  PD++TY+++ E L++   L E 
Sbjct: 484 DLQLETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLVPDVRTYSLMAENLIEQGSLEEL 543

Query: 368 SGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLV 425
             LF  M +N    +     + VR  +   D   A  +   + E H S  + T + L+
Sbjct: 544 DDLFLSMEENGCSADSRMLNSIVRKLLQRGDITRAGTYLFMIDEKHFSLEASTASFLL 601


>gi|212274591|ref|NP_001130971.1| GTP binding protein [Zea mays]
 gi|194690592|gb|ACF79380.1| unknown [Zea mays]
 gi|413947420|gb|AFW80069.1| GTP binding protein [Zea mays]
          Length = 535

 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 89/412 (21%), Positives = 176/412 (42%), Gaps = 15/412 (3%)

Query: 58  LDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLF 117
           L +  + + ++ +  VL+   S+   A+ FF W+A      H   A+  ++D+LG+    
Sbjct: 101 LHQFAVHMDEDIILMVLQKQRSNWQVALAFFNWAATLPGYAHGSRAYTEMLDILGRMKKV 160

Query: 118 DAM---WDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALN 174
             M   +D I   +++ V++   FA + + Y  A +V++AI  F + + YG + D+    
Sbjct: 161 RHMRQLFDEIPEERRQVVVTNKMFAVLLNRYAGAHKVQEAIEVFYLRKDYGFELDLVGFQ 220

Query: 175 SLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEV 234
            LL ++CR     +A    R           ++ I+L GW  +  + +A++ + +++   
Sbjct: 221 ILLMSLCRYKHVEEAEALFREKKDEFPHVTKSWNIILNGWCVKGSLRDAQRIWNDII--A 278

Query: 235 GWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLR 294
                ++  + +++  L K    I   V   K+M E+G NP +       ++    + + 
Sbjct: 279 SKVERDLFTFGTFINALAKN-GRISAAVKLFKQMWEKGINPDVAICNCIIDQLCFKKKIP 337

Query: 295 GAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNIL 354
            A  I+G M  R+  + D   YN +I   C         +LLD+M   G  P+ +TY+ +
Sbjct: 338 EALEIFGEMNDRLC-QADVATYNTLIKYMCKIKRMEKVYELLDDMEAKGCPPNNRTYSYI 396

Query: 355 FEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHC 414
            +   K +   +   L   M +    L+ +     + +Y+         + W  M     
Sbjct: 397 LKTTEKPK---DVIALMQRMERTGCKLDSDIYNLILNLYIKWKYEKGMQQIWDEMERRGS 453

Query: 415 SDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKA 466
                +  ++V GL     L EA++Y   M  +G+   P       +IL+KA
Sbjct: 454 GPDQRSFTIMVHGLHSQGKLDEALQYYTTMKSRGMIPEPRT-----KILVKA 500


>gi|302775071|ref|XP_002970952.1| hypothetical protein SELMODRAFT_441328 [Selaginella moellendorffii]
 gi|300161663|gb|EFJ28278.1| hypothetical protein SELMODRAFT_441328 [Selaginella moellendorffii]
          Length = 698

 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 96/409 (23%), Positives = 167/409 (40%), Gaps = 45/409 (11%)

Query: 106 LVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYG 165
           L+  L+    +  A   A ++      + + T+ ++ +      ++++A+   + +   G
Sbjct: 230 LINGLVKAGMMIQAHSLAQETTTNGCTIDIHTYTAIVNWLAKNKKIQEAVALMEKITANG 289

Query: 166 CKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYAILLEGWEKERDVANAK 224
           C   +   N+LL+ +C+ G+  +A   LR +VD    PD  TY  L++G  KE+    A 
Sbjct: 290 CTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAY 349

Query: 225 KTFGEM------------------VIEVGWDPDNVPAYDSY--------LITLLKGCDG- 257
           K F EM                  +++ G  P     Y +         ++TL    DG 
Sbjct: 350 KLFKEMASRGLALDTVCYTALIRGLLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGL 409

Query: 258 -----IYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD 312
                I   V   K M  RG  P    +          + +  A  +   M  +    PD
Sbjct: 410 SKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQM-KKAFCTPD 468

Query: 313 THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFN 372
           T  YN++I   C S +  AA    DEM+  G  PD+ TYNIL   L K      A G+ +
Sbjct: 469 TITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGLCKAGNTDAACGVLD 528

Query: 373 EMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMH 432
           +M  +  V +     + V     S         +  M  +  ++ S+T   L+  LC  +
Sbjct: 529 DMSSSRFVYS-----SLVDGLCKSGKLEGGCMLFHEMERSGVAN-SQTRTRLIFHLCKAN 582

Query: 433 MLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARK----EAVYEELLK 477
            + EAV     + ++G+   P+A + +   LIK+ K    +AVY+E+ +
Sbjct: 583 RVDEAVSLFNAIRKEGMP-HPYAYNSIISALIKSGKVNEGQAVYQEMTR 630



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 93/433 (21%), Positives = 166/433 (38%), Gaps = 49/433 (11%)

Query: 54  VEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFR-WSAYQLNDKHSPYAWNLVVDLLG 112
           +E  LD+    +S + V ++ +        A + F+  S+ +   +HS +  N ++D+  
Sbjct: 72  IEAALDRLRREISTDAVVKIFQ-CLKDADLAWELFQCLSSPRFGFQHSVHTGNALLDVFA 130

Query: 113 KNCLFDAMWDAIKSMKKENVL----SLATFASVFSSYVVADRVKDAITTFDVMEQ-YGCK 167
           +        +A   +K E        + T+  + + Y +A   ++A      ME+ +G  
Sbjct: 131 RT---KRHREAGNLLKNELATIFRPDVETWNVLITGYCLAREPEEAFAVIREMEEDFGVA 187

Query: 168 HDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTF 227
             +   N +L  +C+ GK + A      V   +     T++IL+ G  K   +  A    
Sbjct: 188 PSLKTHNLVLHGLCKSGKVLAAMDHFEAVRRSMPVSAATFSILINGLVKAGMMIQAHSLA 247

Query: 228 GEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEEC 287
            E     G   D +  Y + ++  L     I E V  ++++   GC P +          
Sbjct: 248 QETTTN-GCTID-IHTYTA-IVNWLAKNKKIQEAVALMEKITANGCTPTIA--------- 295

Query: 288 LTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPD 347
                                       YN +++  C       A+ LL ++V NG  PD
Sbjct: 296 ---------------------------TYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPD 328

Query: 348 IQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWK 407
           + TY  L + L K ++ +EA  LF EM      L+     A +R  + +     A   +K
Sbjct: 329 VVTYTSLIDGLGKEKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQTGKIPQASSVYK 388

Query: 408 YMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKAR 467
            M  + C     T + ++ GL     +  AV+  K M  +G+       S L   L KAR
Sbjct: 389 TMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKAR 448

Query: 468 KEAVYEELLKKCK 480
           K     E+L + K
Sbjct: 449 KMDCALEMLAQMK 461



 Score = 43.1 bits (100), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 55/114 (48%), Gaps = 1/114 (0%)

Query: 100 SPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFD 159
           S + ++ +VD L K+   +        M++  V +  T   +      A+RV +A++ F+
Sbjct: 533 SRFVYSSLVDGLCKSGKLEGGCMLFHEMERSGVANSQTRTRLIFHLCKANRVDEAVSLFN 592

Query: 160 VMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEG 213
            + + G  H  +A NS++SA+ + GK  +     + +    KPD  TY  LL G
Sbjct: 593 AIRKEGMPHP-YAYNSIISALIKSGKVNEGQAVYQEMTRWWKPDRVTYNALLNG 645


>gi|15221691|ref|NP_176501.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169915|sp|Q9CAN0.1|PPR99_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63130, mitochondrial; Flags: Precursor
 gi|12323261|gb|AAG51613.1|AC010795_17 unknown protein; 64081-65973 [Arabidopsis thaliana]
 gi|22136016|gb|AAM91590.1| unknown protein [Arabidopsis thaliana]
 gi|23197834|gb|AAN15444.1| unknown protein [Arabidopsis thaliana]
 gi|332195938|gb|AEE34059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 630

 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 98/422 (23%), Positives = 178/422 (42%), Gaps = 36/422 (8%)

Query: 77  SYSH--------PGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCL-----FDAMWDA 123
           S+SH         G    + + S  +LND     A NL  D++          F  +  A
Sbjct: 31  SFSHCSFWVRDFSGVRYDYRKISINRLNDLKLDDAVNLFGDMVKSRPFPSIVEFSKLLSA 90

Query: 124 IKSMKKENVL--------------SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHD 169
           I  M K +++              +L T++ + + +    ++  A+     M + G + D
Sbjct: 91  IAKMNKFDLVISLGEQMQNLGISHNLYTYSILINCFCRRSQLSLALAVLAKMMKLGYEPD 150

Query: 170 VFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFG 228
           +  LNSLL+  C   +  DA   + ++V+   +PD+ T+  L+ G  +    + A     
Sbjct: 151 IVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVD 210

Query: 229 EMVIEVGWDPDNVPAYDSYLITLLKGCD-GIYETVNSLKRMMERG-CNPGMTFFKLAFEE 286
            MV++ G  PD V    +Y I +   C  G  +   SL + ME+G   PG+  +    + 
Sbjct: 211 RMVVK-GCQPDLV----TYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDA 265

Query: 287 CLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFP 346
               +N+  A  ++  M  + G RP+   YN +I   C       A +LL +M+     P
Sbjct: 266 LCNYKNVNDALNLFTEMDNK-GIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINP 324

Query: 347 DIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFW 406
           ++ T++ L +  VK  KL EA  L++EM+K     +     + +  +   D    A   +
Sbjct: 325 NVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMF 384

Query: 407 KYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKA 466
           + MI   C     T N L+ G C    + E ++  + M+++G+       + L     +A
Sbjct: 385 ELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQA 444

Query: 467 RK 468
           R+
Sbjct: 445 RE 446



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 71/305 (23%), Positives = 129/305 (42%), Gaps = 39/305 (12%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVM 161
            + +VV+ L K    D     +K M++  +   +  + ++  +      V DA+  F  M
Sbjct: 223 TYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEM 282

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYAILLEGWEKERDV 220
           +  G + +V   NSL+  +C  G+  DA + L  +++ +I P+  T++ L++ + KE  +
Sbjct: 283 DNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKL 342

Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNP----- 275
             A+K + EM I+   DPD +  Y S LI      D + E  +  + M+ + C P     
Sbjct: 343 VEAEKLYDEM-IKRSIDPD-IFTYSS-LINGFCMHDRLDEAKHMFELMISKDCFPNVVTY 399

Query: 276 ---------------GMTFFKLAFEECLTGQNLRGAEFIWGAMVGRI------------- 307
                          GM  F+   +  L G  +     I G    R              
Sbjct: 400 NTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVS 459

Query: 308 -GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWE 366
            G  PD   Y++++   C + +   A+ + + +  +   PDI TYNI+ E + K  K+ +
Sbjct: 460 DGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVED 519

Query: 367 ASGLF 371
              LF
Sbjct: 520 GWDLF 524



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/275 (21%), Positives = 107/275 (38%), Gaps = 42/275 (15%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           T++S+ + + + DR+ +A   F++M    C  +V   N+L+   C+  +  +  +  R +
Sbjct: 363 TYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREM 422

Query: 197 DGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
             R +  +  TY  L+ G+ + R+  NA+  F +MV                        
Sbjct: 423 SQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMV-----------------------S 459

Query: 256 DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHM 315
           DG+   + +   +++  CN G     L   E L                 R    PD + 
Sbjct: 460 DGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQ----------------RSKMEPDIYT 503

Query: 316 YNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFE-FLVKGRKLWEASGLFNEM 374
           YN+MI   C + +      L   +   G  P++ TY  +   F  KG K  EA  LF EM
Sbjct: 504 YNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLK-EEADALFREM 562

Query: 375 VKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYM 409
            +   + +       +R ++   D   + +  + M
Sbjct: 563 KEEGPLPDSGTYNTLIRAHLRDGDKAASAELIREM 597


>gi|359486541|ref|XP_002275423.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Vitis vinifera]
          Length = 778

 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 93/368 (25%), Positives = 146/368 (39%), Gaps = 43/368 (11%)

Query: 118 DAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLL 177
           +A  DAIK     NV    TF  V   Y + ++ KDA+   +VM +Y C  D    N++L
Sbjct: 194 EAFNDAIKLGIVPNV---NTFNIVIYGYCLENKFKDAVEFLNVMGKYNCSPDNVTYNTIL 250

Query: 178 SAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGW 236
             +C+ G+  DA   L  +  R + P+ +TY IL+ G+ K   +  A     E++ +   
Sbjct: 251 DTLCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVI-ELMTQNNL 309

Query: 237 DPDN-------------------------------VPAYDSYLITLLKGC---DGIYETV 262
            PD                                +P   SY  TL+ GC     I E  
Sbjct: 310 LPDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSY-NTLINGCLEWSKISEAF 368

Query: 263 NSLKRMMERGCNPGMTFFKLAFE-ECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMIS 321
             L+ M E+G  P      +  +  C  G+    +  I    +   GF PD   YN +I+
Sbjct: 369 KLLEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTI--TKMEESGFSPDCVTYNTLIN 426

Query: 322 LYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVL 381
            YC +   G A + +DEM       D  T N +   L + +KL EA  L +   K    +
Sbjct: 427 GYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRGYFI 486

Query: 382 NHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYA 441
           +  +    +  Y    +   A+K W  M E      + T N ++ GLC      +A+   
Sbjct: 487 DEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQAISKL 546

Query: 442 KGMAEKGI 449
             + E G+
Sbjct: 547 NELLESGL 554



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 74/280 (26%), Positives = 122/280 (43%), Gaps = 11/280 (3%)

Query: 136 ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRV 195
            T+ ++ + Y  A  + +A  T D M +   K D   LN++L  +CR+ K  +A++ L  
Sbjct: 419 VTYNTLINGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSS 478

Query: 196 VDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSY--LITLL 252
              R    D  +Y  L+ G+ K+ +V  A K + EM      + + +P+  +Y  +I  L
Sbjct: 479 ARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMK-----EKEIIPSTVTYNCIIGGL 533

Query: 253 KGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEE-CLTGQNLRGAEFIWGAMVGRIGFRP 311
             C    + ++ L  ++E G  P  T +       C  G   +  +F    MV    F+P
Sbjct: 534 CQCGKTEQAISKLNELLESGLLPDETTYNTILHGYCREGDVEKAFQF-HNKMVEN-SFKP 591

Query: 312 DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLF 371
           D    N+++   C       A+KL +  V  G   D  TYN L   L K  +L +A  L 
Sbjct: 592 DVFTCNILLRGLCMEGVLEKALKLFNTWVSKGKAIDTVTYNTLITSLCKEGRLDDAFNLL 651

Query: 372 NEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIE 411
           +EM + E   +H    A +    DS     A +F   M+E
Sbjct: 652 SEMEEKELGPDHYTYNAIITALTDSGRIREAEEFMSKMLE 691



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 107/460 (23%), Positives = 181/460 (39%), Gaps = 30/460 (6%)

Query: 39  IKTLCEIIANTPSPTVEDVLDKTLIRVSQETVEQVL--KFSYSHPGPAVKFFRWSAYQL- 95
           I+T+  I+A+   P     L+  +  ++   V  +L  K   S P   + FF+W+   L 
Sbjct: 24  IQTITTILASNNMPL--QALNTYIPHLTPPLVLSILSSKTLISRPNILISFFKWAQTNLP 81

Query: 96  --------------NDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASV 141
                             S   ++    LL      D   D   S+ +    S A   + 
Sbjct: 82  TFPHNSLPSLLSLLPSLFSHRKFSDAKSLLLGFIATDRRHDLHLSILRLTSPSKALLDTA 141

Query: 142 FSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICR----DGKTIDAWQFLRVVD 197
             +YV + +   A   F  M++   + ++   N+LL+++ R       +     F   + 
Sbjct: 142 IGAYVQSGQPHHAFQIFKKMKRLRLRPNLLTCNTLLNSLVRYPSSHSVSFSREAFNDAIK 201

Query: 198 GRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDG 257
             I P+ +T+ I++ G+  E    +A + F  ++ +    PDNV  Y++ L TL K    
Sbjct: 202 LGIVPNVNTFNIVIYGYCLENKFKDAVE-FLNVMGKYNCSPDNV-TYNTILDTLCKK-GR 258

Query: 258 IYETVNSLKRMMERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMY 316
           + +  + L  M  RG  P   T+  L +  C  G     A  I   ++ +    PD   Y
Sbjct: 259 LGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVI--ELMTQNNLLPDVWTY 316

Query: 317 NMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK 376
           NM+I+  C       A KL DEM      PD+ +YN L    ++  K+ EA  L  EM +
Sbjct: 317 NMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSE 376

Query: 377 NENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPE 436
                N       V+ Y        A      M E+  S    T N L+ G C    + E
Sbjct: 377 KGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGNMGE 436

Query: 437 AVKYAKGMAEKGIQVTPFALSKLKQILIKARK-EAVYEEL 475
           A +    M  K +++    L+ + + L + +K E  Y+ L
Sbjct: 437 AFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLL 476



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 79/346 (22%), Positives = 143/346 (41%), Gaps = 6/346 (1%)

Query: 122 DAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAI 180
           + I+ M + N+L  + T+  + +      R+++A    D ME      DV + N+L++  
Sbjct: 299 NVIELMTQNNLLPDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGC 358

Query: 181 CRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPD 239
               K  +A++ L  +  + +KP+  T+ I+++ + KE  + +A  T  +M  E G+ PD
Sbjct: 359 LEWSKISEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKME-ESGFSPD 417

Query: 240 NVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFI 299
            V  Y++ +    K  + + E   ++  M  +                   + L  A  +
Sbjct: 418 CV-TYNTLINGYCKAGN-MGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKL 475

Query: 300 WGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLV 359
             +   R G+  D   Y  +I  Y        A+KL DEM      P   TYN +   L 
Sbjct: 476 LSSARKR-GYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLC 534

Query: 360 KGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSE 419
           +  K  +A    NE++++  + +       +  Y    D   A +F   M+EN       
Sbjct: 535 QCGKTEQAISKLNELLESGLLPDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVF 594

Query: 420 TGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIK 465
           T N+L+ GLC   +L +A+K       KG  +     + L   L K
Sbjct: 595 TCNILLRGLCMEGVLEKALKLFNTWVSKGKAIDTVTYNTLITSLCK 640


>gi|225431703|ref|XP_002264696.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13420,
           mitochondrial [Vitis vinifera]
 gi|296088528|emb|CBI37519.3| unnamed protein product [Vitis vinifera]
          Length = 525

 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 114/471 (24%), Positives = 191/471 (40%), Gaps = 35/471 (7%)

Query: 32  VPNLPPTIKT--LCEIIANTPSP--TVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKF 87
           +P+L P+     + +I+    +P   +E  L    I +S   V Q L    +    A+ F
Sbjct: 44  LPSLQPSYDADLISKILLQHHNPFHAMESSLQLNGIALSTHLVHQTLLRLRNVSKIALSF 103

Query: 88  FRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYV 146
           F W+  Q +  H   ++NL++D+L K   FD  W  I  M + ++  +  TF  +    V
Sbjct: 104 FLWAKDQAHHSHDVVSYNLIIDILAKVRQFDVAWQFIIEMDQNSLEPTSTTFRILIRRSV 163

Query: 147 VADRVKDAITTFDVMEQYGCKH-DVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDND 205
            A   + A+  FD M  +  K  D      LL  + + G    A Q       + + +  
Sbjct: 164 SAGLTRQAVRAFDDMSCFVEKDADSDDFCYLLDTLSKYGYVKLASQIFNQRKFKFEANAK 223

Query: 206 TYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD--------- 256
            Y IL+ GW K   V+ A++  GEMV E G +  NV  Y+  L  + +            
Sbjct: 224 MYTILIYGWCKINRVSIAERLLGEMV-ERGIEA-NVVTYNVLLNGICRRASLHPDDRFER 281

Query: 257 GIYETVNSLKRMMERGCNPGMTFFKL-------AFEECLTGQNLRGAEFIWGAMVGRIGF 309
            I +    L  M ++G  P +T + +       A +  LT   LR        M+   G 
Sbjct: 282 TIRDAEKVLDEMRQKGIEPDVTSYSIVIHVYSRAHKPELTLDKLR--------MMKDKGI 333

Query: 310 RPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWE-AS 368
            P    Y  ++   C       A +L+ +MV +G  P   TYN  F+   +GRK  + A 
Sbjct: 334 WPTVATYTSVVKCLCSCGRLEDAEELVSDMVKDGVSPSAATYNCFFK-EYRGRKDSDNAL 392

Query: 369 GLFNEMVKNENVL-NHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAG 427
            L+ +M +  + L +       V +++  +   +  + W  M  +      ++  LL+ G
Sbjct: 393 RLYRKMKEEYSCLPDMHTYNILVGMFVKLNRMEIVQEIWDDMKTSGAGPDLDSYTLLIHG 452

Query: 428 LCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKK 478
           LC+     EA  +   M EKG          L + LI++     +  L KK
Sbjct: 453 LCEKQKWKEACHFFVEMIEKGYLPQKITFETLYRGLIQSDMLKTWRRLKKK 503


>gi|224117122|ref|XP_002317482.1| predicted protein [Populus trichocarpa]
 gi|222860547|gb|EEE98094.1| predicted protein [Populus trichocarpa]
          Length = 433

 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 100/410 (24%), Positives = 173/410 (42%), Gaps = 12/410 (2%)

Query: 65  VSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAI 124
           ++Q+ V +VLK   S   PA  FF W + +     S   +N ++D+LG+   F+ +   +
Sbjct: 1   MTQDLVLKVLKRHRSDWKPAYIFFNWVSKEGTISLSSCVYNEILDILGRMRRFEELTLVL 60

Query: 125 KSM-KKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRD 183
             M K+E  +   T+  + + Y  A  V++AI  F+   + G + D+ +   LL  +CR 
Sbjct: 61  DEMSKREGFVDEDTYRVLVNRYAGAHMVEEAIGAFNKRRELGLELDLVSFQKLLMYLCRY 120

Query: 184 GKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPA 243
                A   L         D  T  I+L GW    +V  AK+ F + +I     PD V  
Sbjct: 121 KHVDVAETLLHSKGHEFGVDIKTMNIVLNGWCVLGNVREAKR-FWKDIIASKCKPD-VFT 178

Query: 244 YDSYLITLL-KGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGA 302
           Y +++  L  KG  G    +   + M +  C P +       +     + +  A  ++  
Sbjct: 179 YGTFIKALTNKGKLGT--AMKLYEAMWKMQCKPDVVICNCVIDALCFKKRVPEALAVFEG 236

Query: 303 MVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMV--YNGAFPDIQTYNILFEFLVK 360
           M  R G  P+   YN +I   C         +LLDEM        PD  T+N L + L  
Sbjct: 237 MKER-GCIPNVATYNSLIKHMCKIGRMEKVYELLDEMQEKKGSCMPDEITFNYLLKSL-- 293

Query: 361 GRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSET 420
            +K  E +G+   M  N   +N++ C   ++++ D D        W+ M +N       +
Sbjct: 294 -KKPEEVAGVLERMKINGCKMNNDTCNLLLKLHADWDSEEKVRYTWEEMEKNGLGLDRRS 352

Query: 421 GNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEA 470
             +++  L D   + +A++Y   M  KG+   P        +  + +KEA
Sbjct: 353 YTIMIHWLYDKGRVEDALRYFGEMENKGMVPEPRTKILCNSMNTRKQKEA 402


>gi|359492658|ref|XP_002281859.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g19290-like [Vitis vinifera]
          Length = 939

 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 79/312 (25%), Positives = 131/312 (41%), Gaps = 46/312 (14%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVL--SLATFASVFSSYVVADRVKDAITTFDV 160
            + L++    K C  D     ++ M++E  L      +  +   Y    ++ DA+   D 
Sbjct: 298 TYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDE 357

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERD 219
           M + G K ++F  NSL++  C+ G+  +A   + R+VD  +KPD+ +Y  LL+G+ +E  
Sbjct: 358 MLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGH 417

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLK---RMMERGCNPG 276
            + A     +M+ E G +P  V  Y+    TLLKG   +    ++L+    MM+RG  P 
Sbjct: 418 TSEAFNLCDKMLQE-GIEP-TVLTYN----TLLKGLCRVGAFDDALQIWHLMMKRGVAPD 471

Query: 277 MTFFKLAFEECLTGQNLRGAEFIWGAMVGR------------------------------ 306
              +    +     +N  GA  +W  ++ R                              
Sbjct: 472 EVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMISGLCKMGKMVEAEEIFD 531

Query: 307 ----IGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGR 362
               +G  PD   Y  +I  YC ++  G A K+   M      P I+ YN L   L K R
Sbjct: 532 KMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREPISPSIEMYNSLISGLFKSR 591

Query: 363 KLWEASGLFNEM 374
           +L E + L  EM
Sbjct: 592 RLVEVTDLLTEM 603



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 97/454 (21%), Positives = 184/454 (40%), Gaps = 28/454 (6%)

Query: 33  PNLPPTIKTLCEIIANTPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSA 92
           P  P  +  +C ++         + + K     S + V+ VL+    +P  ++ FF++ +
Sbjct: 38  PAPPELVSRICRLVLLRRC----NAISKLNFVFSDDIVDAVLRNLRLNPTASLGFFQFVS 93

Query: 93  YQLNDKHSPYAWNLVVDLLGKNCLFD--------------------AMWDAIKSMKKENV 132
            Q N + +  ++  +V +L +  ++D                     +WD +  + +E  
Sbjct: 94  KQQNFRPNVKSYCKLVHILSRGRMYDETRAYLNQLVDLCKFKDRGNVIWDELVGVYREFA 153

Query: 133 LSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDA-WQ 191
            S   F  +   YV     K+A+  FD M + G    + + NSLL+ + ++G+T  A + 
Sbjct: 154 FSPTVFDMILKVYVEKGLTKNALYVFDNMGKCGRIPSLRSCNSLLNNLVKNGETHTAHYV 213

Query: 192 FLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITL 251
           + +++   I PD    +I++  + K+  V  A   F + +  +G +P N+  Y S LI  
Sbjct: 214 YQQMIRVGIVPDVFMVSIMVNAFCKDGKVDEAA-GFVKKMENLGVEP-NIVTYHS-LING 270

Query: 252 LKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRP 311
                 +      LK M E+G +  +  + L  +       +  AE +   M       P
Sbjct: 271 YVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVP 330

Query: 312 DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLF 371
           D   Y ++I  YC + +   A++LLDEM+  G   ++   N L     K  ++ EA G+ 
Sbjct: 331 DERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVI 390

Query: 372 NEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDM 431
             MV      +  +    +  Y        A      M++        T N L+ GLC +
Sbjct: 391 TRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRV 450

Query: 432 HMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIK 465
               +A++    M ++G+       S L   L K
Sbjct: 451 GAFDDALQIWHLMMKRGVAPDEVGYSTLLDGLFK 484



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 79/366 (21%), Positives = 137/366 (37%), Gaps = 43/366 (11%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           T+ ++   Y  A  V  A      ME+      +   NSL+S + +  + ++    L  +
Sbjct: 544 TYRTLIDGYCKASNVGQAFKVKGAMEREPISPSIEMYNSLISGLFKSRRLVEVTDLLTEM 603

Query: 197 DGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEM------------------------- 230
             R + P+  TY  L++GW KE  +  A  ++ EM                         
Sbjct: 604 GIRGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMVSGLYRLGRI 663

Query: 231 -----VIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCN----PGMTFFK 281
                +++   D    P ++ +L + ++     Y  +  +   ++  C     P    + 
Sbjct: 664 DEANLLMQKMVDHGFFPDHECFLKSDIR-----YAAIQKIADSLDESCKTFLLPNNIVYN 718

Query: 282 LAFEE-CLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMV 340
           +A    C TG+      F   +M+   GF PD   Y  +I  Y  +     A +L DEM+
Sbjct: 719 IAIAGLCKTGKVDDARRFF--SMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEML 776

Query: 341 YNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPY 400
             G  P+I TYN L   L K   +  A  LF+++ +     N       +  Y    +  
Sbjct: 777 RRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNMD 836

Query: 401 VAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLK 460
            A K    MIE   S    T + L+ GLC    +  ++K    M + G+         L 
Sbjct: 837 AAFKLKDKMIEEGISPSVVTYSALINGLCKHGDIERSMKLLNQMIKAGVDSKLIEYCTLV 896

Query: 461 QILIKA 466
           Q  I++
Sbjct: 897 QGYIRS 902



 Score = 38.5 bits (88), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 26/112 (23%), Positives = 54/112 (48%), Gaps = 2/112 (1%)

Query: 127 MKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKT 186
           +++  V ++ T+ ++ +    ++ V  A   F  + Q G   +V   N+L+   C+ G  
Sbjct: 776 LRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNM 835

Query: 187 IDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWD 237
             A++   ++++  I P   TY+ L+ G  K  D+  + K   +M I+ G D
Sbjct: 836 DAAFKLKDKMIEEGISPSVVTYSALINGLCKHGDIERSMKLLNQM-IKAGVD 886


>gi|302769784|ref|XP_002968311.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
 gi|300163955|gb|EFJ30565.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
          Length = 600

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 92/355 (25%), Positives = 158/355 (44%), Gaps = 13/355 (3%)

Query: 99  HSPYAWNLVVDL--LGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAIT 156
           +SP A+ + + L  L K+   +     ++ +  + +  ++TF    S    A R+ DA T
Sbjct: 12  YSPDAYTVGILLRSLLKSGKIEKAHRFVEQLLVKGLCDISTFNIYISGLCRASRIGDAQT 71

Query: 157 TFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWE 215
            FD M ++G   +    N+LLS +C  G+  DA   + R++     PD  TY  LL G+ 
Sbjct: 72  VFDGMRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFC 131

Query: 216 KERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNP 275
           K   +  A K F +  ++ G+ PD V  Y++ +    K  D + E    L+RM+     P
Sbjct: 132 KVGKLDEALKIF-DGAVKRGFVPD-VVTYNALINGFCKA-DKLDEAQRILQRMVSESLVP 188

Query: 276 G-MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYS-NETGAAM 333
             +T+  L    C  G+       I        GF P+   Y+ +IS  C       +A 
Sbjct: 189 DVVTYNSLVNGLCKNGRVDEARMLIVDK-----GFSPNVITYSTLISGLCRELRRLESAR 243

Query: 334 KLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVY 393
           +LL++MV NG  PDI +YN L   L + + + EA  LF  +++             +   
Sbjct: 244 QLLEKMVLNGCKPDIVSYNALIHGLAREQGVSEALKLFGSVLRQGYEPEVPTYNILIDGL 303

Query: 394 MDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448
           +  D    A + +  ++++     + T  + + GLC    + +A+   K M EKG
Sbjct: 304 LKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKG 358



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 93/350 (26%), Positives = 156/350 (44%), Gaps = 11/350 (3%)

Query: 104 WNLVVDLLGKNCLFD-AMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVME 162
           +N +V+ L KN   D A    +      NV++ +T  S     +   R++ A    + M 
Sbjct: 193 YNSLVNGLCKNGRVDEARMLIVDKGFSPNVITYSTLISGLCREL--RRLESARQLLEKMV 250

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDVA 221
             GCK D+ + N+L+  + R+    +A + F  V+    +P+  TY IL++G  KE  V 
Sbjct: 251 LNGCKPDIVSYNALIHGLAREQGVSEALKLFGSVLRQGYEPEVPTYNILIDGLLKEDRVN 310

Query: 222 NAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFK 281
            A + F  +V + G +PD +  Y  ++  L K    + + +  LK M E+GC P +    
Sbjct: 311 EAFELFSGLV-KHGLEPDAI-TYTVFIDGLCKA-GRVEDALLMLKDMDEKGCVPDVVSHN 367

Query: 282 LAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVY 341
                    + +  AE +   M  + G  P+   +N +I   C + +   AM    EM+ 
Sbjct: 368 AVINGLCKEKRVDEAEVLLSGMEAK-GCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLK 426

Query: 342 NGAFPDIQTYNILFEFLVKGR---KLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDD 398
            G  P + TYNIL + L K R   ++ EA  LF+ M++   V +     A +     +  
Sbjct: 427 RGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGK 486

Query: 399 PYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448
              A +    M    C     T N L++GLC +  + EA++    M EKG
Sbjct: 487 LDDARRLLGAMEAKGCIPNVYTYNSLISGLCGLDKVDEALELFVAMVEKG 536



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 97/334 (29%), Positives = 151/334 (45%), Gaps = 33/334 (9%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           T+ ++ S      R+ DA   ++ M + G   DV   N+LL   C+ GK  +A   L++ 
Sbjct: 87  TYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGKLDEA---LKIF 143

Query: 197 DGRIK----PDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
           DG +K    PD  TY  L+ G+ K   +  A++    MV E    PD V  Y+S +  L 
Sbjct: 144 DGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSE-SLVPD-VVTYNSLVNGLC 201

Query: 253 KGCDGIYETVNSLKRMMERGCNPG-MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRP 311
           K  +G  +    L  ++++G +P  +T+  L    C   + L  A  +   MV   G +P
Sbjct: 202 K--NGRVDEARML--IVDKGFSPNVITYSTLISGLCRELRRLESARQLLEKMVLN-GCKP 256

Query: 312 DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLF 371
           D   YN +I           A+KL   ++  G  P++ TYNIL + L+K  ++ EA  LF
Sbjct: 257 DIVSYNALIHGLAREQGVSEALKLFGSVLRQGYEPEVPTYNILIDGLLKEDRVNEAFELF 316

Query: 372 NEMVKNE--------NVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNL 423
           + +VK+          V     C+A  RV    +D   A+   K M E  C     + N 
Sbjct: 317 SGLVKHGLEPDAITYTVFIDGLCKAG-RV----ED---ALLMLKDMDEKGCVPDVVSHNA 368

Query: 424 LVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALS 457
           ++ GLC    + EA     GM  KG   +P A+S
Sbjct: 369 VINGLCKEKRVDEAEVLLSGMEAKG--CSPNAIS 400



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 78/341 (22%), Positives = 149/341 (43%), Gaps = 7/341 (2%)

Query: 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL- 193
           + T+ ++   +    ++ +A+  FD   + G   DV   N+L++  C+  K  +A + L 
Sbjct: 120 VVTYNTLLHGFCKVGKLDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQ 179

Query: 194 RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLK 253
           R+V   + PD  TY  L+ G  K   V  A+     ++++ G+ P NV  Y + +  L +
Sbjct: 180 RMVSESLVPDVVTYNSLVNGLCKNGRVDEARM----LIVDKGFSP-NVITYSTLISGLCR 234

Query: 254 GCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDT 313
               +      L++M+  GC P +  +          Q +  A  ++G+++ R G+ P+ 
Sbjct: 235 ELRRLESARQLLEKMVLNGCKPDIVSYNALIHGLAREQGVSEALKLFGSVL-RQGYEPEV 293

Query: 314 HMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNE 373
             YN++I      +    A +L   +V +G  PD  TY +  + L K  ++ +A  +  +
Sbjct: 294 PTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKD 353

Query: 374 MVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHM 433
           M +   V +  +  A +           A      M    CS  + + N L+ G C    
Sbjct: 354 MDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGK 413

Query: 434 LPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEE 474
             +A+   K M ++G++ T    + L   L KAR+E   +E
Sbjct: 414 WKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKE 454



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 74/293 (25%), Positives = 132/293 (45%), Gaps = 8/293 (2%)

Query: 84  AVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVF- 142
           A+K F     Q  +   P  +N+++D L K    +  ++    + K  +   A   +VF 
Sbjct: 277 ALKLFGSVLRQGYEPEVP-TYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFI 335

Query: 143 SSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IK 201
                A RV+DA+     M++ GC  DV + N++++ +C++ +  +A   L  ++ +   
Sbjct: 336 DGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCS 395

Query: 202 PDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG-CDG-IY 259
           P+  ++  L+ G  +      A  TF EM ++ G  P  V  Y+  +  L K   +G I 
Sbjct: 396 PNAISFNTLICGQCRAGKWKKAMTTFKEM-LKRGVKP-TVVTYNILVDGLCKARQEGRIK 453

Query: 260 ETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMM 319
           E +     M+E+G  P +  +    +       L  A  + GAM  + G  P+ + YN +
Sbjct: 454 EAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAK-GCIPNVYTYNSL 512

Query: 320 ISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFN 372
           IS  C  ++   A++L   MV  G  PD  TY  +   L K   + +A  LF+
Sbjct: 513 ISGLCGLDKVDEALELFVAMVEKGCVPDTITYGTIISALCKQEMVDKALALFD 565



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 75/289 (25%), Positives = 129/289 (44%), Gaps = 20/289 (6%)

Query: 169 DVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFG 228
           D + +  LL ++ + GK   A +F+  +  +   D  T+ I + G  +   + +A+  F 
Sbjct: 15  DAYTVGILLRSLLKSGKIEKAHRFVEQLLVKGLCDISTFNIYISGLCRASRIGDAQTVFD 74

Query: 229 EMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSL-KRMMERGCNPGM-TFFKLAFEE 286
            M     W P+ +  Y++ L  L  G  G      +L +RM++ G +P + T+  L    
Sbjct: 75  GMRKHGFW-PNRI-TYNALLSGLCNG--GRMSDAQALYERMIKAGYSPDVVTYNTLLHGF 130

Query: 287 CLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFP 346
           C  G+ L  A  I+   V R GF PD   YN +I+ +C +++   A ++L  MV     P
Sbjct: 131 CKVGK-LDEALKIFDGAVKR-GFVPDVVTYNALINGFCKADKLDEAQRILQRMVSESLVP 188

Query: 347 DIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHEN-----CRAAVRVYMDSDDPYV 401
           D+ TYN L   L K  ++ EA  L  +   + NV+ +       CR   R+         
Sbjct: 189 DVVTYNSLVNGLCKNGRVDEARMLIVDKGFSPNVITYSTLISGLCRELRRLES------- 241

Query: 402 AIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQ 450
           A +  + M+ N C     + N L+ GL     + EA+K    +  +G +
Sbjct: 242 ARQLLEKMVLNGCKPDIVSYNALIHGLAREQGVSEALKLFGSVLRQGYE 290



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 72/308 (23%), Positives = 132/308 (42%), Gaps = 10/308 (3%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           T+  +    +  DRV +A   F  + ++G + D       +  +C+ G+  DA   L+ +
Sbjct: 295 TYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDM 354

Query: 197 DGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
           D +   PD  ++  ++ G  KE+ V  A+     M  + G  P N  ++++ +    +  
Sbjct: 355 DEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAK-GCSP-NAISFNTLICGQCRA- 411

Query: 256 DGIYE-TVNSLKRMMERGCNPGMTFFKLAFEE-CLTGQNLRGAEFI--WGAMVGRIGFRP 311
            G ++  + + K M++RG  P +  + +  +  C   Q  R  E I  + AM+ + G  P
Sbjct: 412 -GKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEK-GRVP 469

Query: 312 DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLF 371
           D   Y+ +I     + +   A +LL  M   G  P++ TYN L   L    K+ EA  LF
Sbjct: 470 DVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLISGLCGLDKVDEALELF 529

Query: 372 NEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDM 431
             MV+   V +       +      +    A+  +   +E      S     L+ GLC +
Sbjct: 530 VAMVEKGCVPDTITYGTIISALCKQEMVDKALALFDGSLEAGVVPTSGMYFSLIDGLCAV 589

Query: 432 HMLPEAVK 439
             + EA+K
Sbjct: 590 ARVDEALK 597


>gi|317106735|dbj|BAJ53231.1| JHL06P13.11 [Jatropha curcas]
          Length = 826

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 88/353 (24%), Positives = 155/353 (43%), Gaps = 26/353 (7%)

Query: 124 IKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRD 183
           I+  ++ + L L  + ++    VVA  V  A+T  D M + G   D    N L+S +C+ 
Sbjct: 401 IEMSERGHTLDLIAYGALVHGLVVAGEVDVALTVRDKMMERGILPDANIYNVLMSGLCKK 460

Query: 184 GKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVP 242
           G+   A Q L  ++D  + PD    A L++G+ +  ++  AKK F ++ IE G D   V 
Sbjct: 461 GRFPAAKQLLVEMLDQNVTPDAFVNATLVDGFIRHGNLDEAKKLF-QLTIERGIDTSVVE 519

Query: 243 AYDSYLITLLKG-CDGIYETVNS----LKRMMERGCNPGMTFFKLAFEECLTGQNLRGAE 297
                   ++KG C   Y  +N      KRM     +P    +    +  +   +LRGA 
Sbjct: 520 CN-----AMIKGYCK--YGMMNDALLCFKRMFNGVHSPDEFTYSTIIDGYVKQNDLRGAL 572

Query: 298 FIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEF 357
            ++G M+ +   +P+   +  +I+ +C + +   A K+ +EM   G  P++ TY IL  +
Sbjct: 573 RMFGLMLKKTC-KPNVVTFTSLINGFCRNGDLNRAEKVFEEMRSFGFEPNVVTYTILIGY 631

Query: 358 LVKGRKLWEASGLFNEMVKNENVLNH-----------ENCRAAVRVYMDSDDPYVAIKFW 406
             K  KL +A   F +M+ N+ + N             N   A+     +  P + ++F+
Sbjct: 632 FCKEGKLTKACFFFEQMLINKCIPNDATFNYLVNGLTNNNGIAISSKRSNSQPNLTLEFF 691

Query: 407 KYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKL 459
             MI +         N ++  LC   M+  A++    M  KG    P +   L
Sbjct: 692 GMMISDGWDWRIAAYNSILLCLCQHKMVKPALQLHDKMMSKGFPPDPVSFIAL 744



 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 116/496 (23%), Positives = 201/496 (40%), Gaps = 57/496 (11%)

Query: 15  PDPHNKRKRSTFASHLDVPNLPPTIKTLCEIIANTP--SPTVEDVLDKTLIRVSQETVEQ 72
           P  H K   S   S    P+L   +K    II         +E    +T  RVS+  +  
Sbjct: 11  PLRHPKPTSSCIPS---TPHLKYLVKDTIRIIKTETLWQEALEIRFSETDTRVSE--IAH 65

Query: 73  VLKFSYSHPGPAVKFFRWSAYQ--LNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMK-K 129
            +      P   + FF W++ Q  L++    +  + ++ LL +  +F  + + +++MK K
Sbjct: 66  FVFDQIHDPRLGLNFFEWASKQSTLSNSLDGFVCSSLLKLLARFRVFKEIENLLETMKSK 125

Query: 130 ENVLSLATFASVFSSYVVADRVKDAITTFD-VMEQYGCKHDVFALNSLLSAICRDGKT-- 186
           E + +    + V S+Y  +  VK+A+  ++ V++ + C  DVFA NSLL+ +   GK   
Sbjct: 126 ELIPTCEALSFVISAYAGSGLVKEALELYNTVIDVHNCVPDVFACNSLLNLLVHHGKVEI 185

Query: 187 --------------IDAWQFLRVVDGRIK--------------------PDNDTYAILLE 212
                         +D +    V  G  K                    P+   Y  L++
Sbjct: 186 ARKVYDEMVDRNGDVDNYTVCIVTKGLCKEGKVEEGRHLIEKRWGKGCVPNIVFYNTLID 245

Query: 213 GWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNS-LKRMMER 271
           G+ K  D+  A   F E+ ++ G+ P  V  Y + +    K   G +E V+  L  M ER
Sbjct: 246 GYCKNGDIERANLLFKELKVK-GFLP-TVKTYGAMINAFCK--KGKFEAVDKLLVEMKER 301

Query: 272 GCNPGMTFFKLAFEECLT-GQNLRGAEFI-WGAMVGRIGFRPDTHMYNMMISLYCYSNET 329
           G    +  F    +     G  +  A+ + W  M+   G  PD   YN +I+  C   + 
Sbjct: 302 GLAVSLQIFNGIIDARFKHGCEIEAADAVRW--MI-ESGCEPDMATYNTLINGSCSKGKV 358

Query: 330 GAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAA 389
             A +LL+  +  G FP+  +Y  L     K  +   AS L  EM +  + L+     A 
Sbjct: 359 REAEELLEHAIRRGLFPNKFSYTPLIHAFSKNGEYVRASELLIEMSERGHTLDLIAYGAL 418

Query: 390 VRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
           V   + + +  VA+     M+E      +   N+L++GLC     P A +    M ++ +
Sbjct: 419 VHGLVVAGEVDVALTVRDKMMERGILPDANIYNVLMSGLCKKGRFPAAKQLLVEMLDQNV 478

Query: 450 QVTPFALSKLKQILIK 465
               F  + L    I+
Sbjct: 479 TPDAFVNATLVDGFIR 494


>gi|46390363|dbj|BAD15828.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|215697127|dbj|BAG91121.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 554

 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 91/386 (23%), Positives = 163/386 (42%), Gaps = 43/386 (11%)

Query: 102 YAWN-LVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDV 160
           Y +N L+  L G+    +A+    + +++  V  + T+  +  +       K A+   D 
Sbjct: 159 YTYNTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDE 218

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDG-RIKPDNDTYAILLEGWEKERD 219
           M   GC  D+   N +++ IC++G+  DA +FL+ +     +P+  +Y I+L+G      
Sbjct: 219 MRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAER 278

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYE-TVNSLKRMMERGCNPGMT 278
             +A++  GEM  + G  P NV  ++  +  L +   G+ E  +  L+++ + GC P   
Sbjct: 279 WEDAEELMGEMG-QKGC-PPNVVTFNMLISFLCR--KGLVEPALEVLEQIPKYGCTPNSL 334

Query: 279 FFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDE 338
            +          + +  A      MV R G  PD   YN +++  C S E   A++LL +
Sbjct: 335 SYNPLLHAFCKQKKMDKAMAFLDLMVSR-GCYPDIVSYNTLLTALCRSGEVDVAVELLHQ 393

Query: 339 MVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK---NENVLNHEN-----CRA-- 388
           +   G  P + +YN + + L K  K  EA  L NEMV      +++ +       CR   
Sbjct: 394 LKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDR 453

Query: 389 ---AVRVYMDSDD----------------------PYVAIKFWKYMIENHCSDLSETGNL 423
              A+R +    D                       + AI  + YMI N C     T  +
Sbjct: 454 IEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTI 513

Query: 424 LVAGLCDMHMLPEAVKYAKGMAEKGI 449
           L+ GL    ++ EA      +  +G+
Sbjct: 514 LIEGLAYEGLIKEARDLLDELCSRGV 539



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 74/291 (25%), Positives = 119/291 (40%), Gaps = 38/291 (13%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           ++  V      A+R +DA      M Q GC  +V   N L+S +CR G    A + L  +
Sbjct: 265 SYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQI 324

Query: 197 DG-RIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL--- 252
                 P++ +Y  LL  + K++ +  A   F ++++  G  PD V +Y++ L  L    
Sbjct: 325 PKYGCTPNSLSYNPLLHAFCKQKKMDKAM-AFLDLMVSRGCYPDIV-SYNTLLTALCRSG 382

Query: 253 --------------KGC-----------DGIY------ETVNSLKRMMERGCNPGMTFFK 281
                         KGC           DG+       E +  L  M+ +G  P +  + 
Sbjct: 383 EVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYS 442

Query: 282 LAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVY 341
                      +  A   +G  V  +G RP+T +YN +I   C   ET +A+ L   M+ 
Sbjct: 443 TIAAGLCREDRIEDAIRAFGK-VQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIG 501

Query: 342 NGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRV 392
           NG  P+  TY IL E L     + EA  L +E+     V      + A+R+
Sbjct: 502 NGCMPNESTYTILIEGLAYEGLIKEARDLLDELCSRGVVRKSLINKGAIRL 552



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 77/316 (24%), Positives = 131/316 (41%), Gaps = 12/316 (3%)

Query: 166 CKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKK 225
           C  DV A N++++  C  G+ +DA + L V +  ++PD  TY  L+ G       ANA  
Sbjct: 122 CGPDVMAYNAMVAGYCGAGQ-LDAARRL-VAEMPVEPDAYTYNTLIRGLCGRGRTANALA 179

Query: 226 TFGEMVIEVGWDPDNVPAYDSYLITLLKGC--DGIYETVNSLKRMMERGCNPGMTFFKLA 283
              EM+         VP   +Y I L   C   G  + +  L  M ++GC P +  + + 
Sbjct: 180 VLDEMLRR-----RCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVV 234

Query: 284 FEE-CLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYN 342
               C  G+     EF+    +   G  P+T  YN+++   C +     A +L+ EM   
Sbjct: 235 VNGICQEGRVDDAIEFLKN--LPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQK 292

Query: 343 GAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVA 402
           G  P++ T+N+L  FL +   +  A  +  ++ K     N  +    +  +        A
Sbjct: 293 GCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKA 352

Query: 403 IKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQI 462
           + F   M+   C     + N L+  LC    +  AV+    + +KG      + + +   
Sbjct: 353 MAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDG 412

Query: 463 LIKARKEAVYEELLKK 478
           L KA K     ELL +
Sbjct: 413 LTKAGKTKEALELLNE 428



 Score = 48.1 bits (113), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 33/143 (23%), Positives = 66/143 (46%), Gaps = 5/143 (3%)

Query: 93  YQLNDKHSP---YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVA 148
           +QL DK       ++N V+D L K        + +  M  + +   + T++++ +     
Sbjct: 392 HQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCRE 451

Query: 149 DRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTY 207
           DR++DAI  F  ++  G + +    N+++  +C+  +T  A   F  ++     P+  TY
Sbjct: 452 DRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTY 511

Query: 208 AILLEGWEKERDVANAKKTFGEM 230
            IL+EG   E  +  A+    E+
Sbjct: 512 TILIEGLAYEGLIKEARDLLDEL 534


>gi|15232243|ref|NP_191564.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75181813|sp|Q9M1D8.1|PP288_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g60050
 gi|7076758|emb|CAB75920.1| putative protein [Arabidopsis thaliana]
 gi|332646485|gb|AEE80006.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 473

 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 95/336 (28%), Positives = 150/336 (44%), Gaps = 25/336 (7%)

Query: 55  EDVLDKTLIRVSQETVEQVL-----KFSYSHPGP----AVKFFRWSAYQLNDKHSPYAWN 105
           + VLD+  +RVS   V +VL       SY +       A +FF WS  Q   +H+  +++
Sbjct: 94  KSVLDELNVRVSGLLVREVLVGILRNLSYDNKARCAKLAYRFFLWSGEQECFRHTVNSYH 153

Query: 106 LVVDLLGKNCLFDAMWDAIKSMKKENVLSLA-TFASVFSSYVVADRVKDAITTFDVMEQY 164
           L++ +  +   + AMW  +  M ++   + A TF  +  S   A   K A+  F   + +
Sbjct: 154 LLMKIFAECGEYKAMWRLVDEMVQDGFPTTARTFNLLICSCGEAGLAKQAVVQFMKSKTF 213

Query: 165 G---CKHDVFA-LNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKER-- 218
                KH   A LNSLL    +  K I+ W + ++++    PD  TY ILL  W   R  
Sbjct: 214 NYRPFKHSYNAILNSLLGV--KQYKLIE-WVYKQMLEDGFSPDVLTYNILL--WTNYRLG 268

Query: 219 DVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMT 278
            +    + F EM  + G+ PD+   Y+  L  L KG   +   + +L  M E G +P + 
Sbjct: 269 KMDRFDRLFDEMARD-GFSPDSY-TYNILLHILGKGNKPL-AALTTLNHMKEVGIDPSVL 325

Query: 279 FFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDE 338
            +    +      NL   ++    MV + G RPD   Y +MI+ Y  S E   A ++  E
Sbjct: 326 HYTTLIDGLSRAGNLEACKYFLDEMV-KAGCRPDVVCYTVMITGYVVSGELDKAKEMFRE 384

Query: 339 MVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
           M   G  P++ TYN +   L    +  EA  L  EM
Sbjct: 385 MTVKGQLPNVFTYNSMIRGLCMAGEFREACWLLKEM 420



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 59/128 (46%), Gaps = 4/128 (3%)

Query: 154 AITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLE 212
           A+TT + M++ G    V    +L+  + R G       FL  +V    +PD   Y +++ 
Sbjct: 308 ALTTLNHMKEVGIDPSVLHYTTLIDGLSRAGNLEACKYFLDEMVKAGCRPDVVCYTVMIT 367

Query: 213 GWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERG 272
           G+    ++  AK+ F EM ++ G  P NV  Y+S +  L    +   E    LK M  RG
Sbjct: 368 GYVVSGELDKAKEMFREMTVK-GQLP-NVFTYNSMIRGLCMAGE-FREACWLLKEMESRG 424

Query: 273 CNPGMTFF 280
           CNP    +
Sbjct: 425 CNPNFVVY 432


>gi|357501695|ref|XP_003621136.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496151|gb|AES77354.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 821

 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 118/511 (23%), Positives = 219/511 (42%), Gaps = 59/511 (11%)

Query: 4   NDKRRHHDDPSPDPHNKRKRSTFASHLDVP--NLPPTIKTLCEIIANTPSPTVEDVLDKT 61
           N+ + H   P P  +       F +H      NLP  I T+  II N P P  +  L  T
Sbjct: 8   NNLKNHIHTPKPASY------IFNNHFTTQSKNLP-NIDTITTIINNHPFP--QKPLHPT 58

Query: 62  LIR-------VSQETVEQVLK---FSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLL 111
           L+        +    ++ +L     S+S+   A++FF ++    +      +  + + +L
Sbjct: 59  LLHYFPPTTPIPSSLIQNILIRLFASHSNGLKALEFFNFTIKNTHTNPCASSLEITLHIL 118

Query: 112 GKNCLFDAMWDAIKSMKKE--NVLSLATFASVFSSYVVADRVKDAITTFDVMEQ---YGC 166
            +   FD  W  +  +      +L+L     + +        ++ +  F  ME+    G 
Sbjct: 119 TRMRYFDKAWSLLIQIANTYPGLLTLKAMNIMLAKIAKYKSFEETLDGFRRMEEEVFVGR 178

Query: 167 KHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDVANAKK 225
           +      N LL       +  +A   F+R VD R K D  +  ILL G+++  DV + + 
Sbjct: 179 EFGSDEFNVLLKVFATQRQMKEARSVFVRFVD-RFKADTKSMNILLLGFKETGDVTSVEL 237

Query: 226 TFGEMVIEVGWDPDNVP---AYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKL 282
            + EMV + G+ PD+V      D+Y     KG  G  + +  L+ M  R        F +
Sbjct: 238 FYHEMV-KRGFKPDSVSFGIRIDAYC---KKGRFG--DALRLLEEMESRK-------FVV 284

Query: 283 AFEECLTGQNLRGAEFIWG-----AMVGRIGFRP---DTHMYNMMISLYCYSNETGAAMK 334
           + E   T   + GA  +        +   I  R    D+ +YN +I+    + +  +A+ 
Sbjct: 285 SVETITTL--IHGAGLVQNPGKAWQLFNEIPLRNLVVDSGVYNALITTLVRNRDVVSALS 342

Query: 335 LLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYM 394
           L+D M+     PD  TY+ +F  L+K R +   S L+ +M K + V         ++ + 
Sbjct: 343 LMDGMIEKQILPDGVTYHTIFLGLMKSRGIEGVSELYQKMTKRKFVPKTRTVVVLMKYFC 402

Query: 395 DSDDPYVAIKFWKYMIE-NHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTP 453
            +    +++  W Y++E  HC   +   +LLV GLC   ++ EA   +K   E+G  ++ 
Sbjct: 403 HNSRLDLSLSLWNYLVEKGHCPH-AHALDLLVTGLCSRGLVQEAFSCSKQTLERGRYISS 461

Query: 454 FALSKLKQILIKAR---KEAVYEELLKKCKA 481
            A   L+++L ++R   K    ++++KK ++
Sbjct: 462 TAFLMLERLLKQSRDVDKLKELDQMIKKLRS 492


>gi|449505615|ref|XP_004162522.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g73400, mitochondrial-like [Cucumis sativus]
          Length = 559

 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 95/412 (23%), Positives = 181/412 (43%), Gaps = 18/412 (4%)

Query: 54  VEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLG- 112
           +E  LD+  + ++ + V  +L         A +FF W+A Q N  H P  +N ++D+L  
Sbjct: 103 MEGALDQVGVYLTTDLVADILHRLRFDEKLAFRFFTWAARQENYSHEPRVYNEMIDILSS 162

Query: 113 ---KNCLFDAMWDAIKSMKK--ENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCK 167
              K   F  + D +  MK+  +N + +     +  +Y   D+    +  F   ++   K
Sbjct: 163 TRYKVKQFRIVCDLLDYMKRNDKNTVPVEVLFGILRNY--TDKYLTCLQKFAKKKKVIVK 220

Query: 168 H--DVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKK 225
              ++ A N LL A+C+     DA   L+ V  ++KPD +TY I+  GW + R+     +
Sbjct: 221 RQPEINAFNLLLDALCKCSLVEDAEALLKKVKKKLKPDANTYNIMXFGWCRVRNPGRGMR 280

Query: 226 TFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGC---NPGMTFFKL 282
              EM IE+G+DPDN   Y++ + +  K    + E     + M  +G    +P    + +
Sbjct: 281 VLEEM-IELGFDPDNF-TYNTAIASFCKA-GMLKEACELFEFMRTKGSALSSPTAKTYAI 337

Query: 283 AFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYN 342
                +    +    F +   + + G  PD   Y  MI   C + +   A   L+EM   
Sbjct: 338 MIVALVNNGRMEEC-FKFLEYMIKSGCLPDVSTYKEMIEGICVAGKVQEAYMFLEEMGKK 396

Query: 343 GAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVA 402
           G  PDI TYN   + L   +   +A    + M++   + + +     + ++ + +D   A
Sbjct: 397 GYPPDIVTYNCFLKVLCDNKMSDDALRHCDRMIEVGCLPSVQTYNMLISMFFEMNDHNGA 456

Query: 403 IKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPF 454
            + W  M    C+   ++  +++ GL   + + +A    + +  KG+++ PF
Sbjct: 457 FQIWLEMDRYGCTRDVDSYCIMIEGLFGCNKVGDACLLLEEVVNKGMKL-PF 507


>gi|222641466|gb|EEE69598.1| hypothetical protein OsJ_29150 [Oryza sativa Japonica Group]
          Length = 579

 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 92/379 (24%), Positives = 156/379 (41%), Gaps = 7/379 (1%)

Query: 73  VLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENV 132
           VL+     P P+++FF ++       H P +  ++ + L    LF  +   +  +   + 
Sbjct: 94  VLRRCRHLPLPSLRFFLFAGELPGFSHHPDSLLVLANSLAGARLFPLLRSLLSDLPP-SA 152

Query: 133 LSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQF 192
           LS   F  +F +Y  A   +DAI  F  M  +G    +   +SLL A+ R+G      +F
Sbjct: 153 LSRGLFPLLFRAYSRARLPEDAIRAFSSMAGFGFPPTIADFHSLLFALSRNGLVEYGERF 212

Query: 193 LRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
            R    +       Y IL+ GW   +   NA+  F EMV + G + D V  Y++ +  L 
Sbjct: 213 FRESTAQFDVSAKAYTILISGWAVVKKPENARSLFDEMV-KRGVELD-VHVYNALIDALC 270

Query: 253 KGCDGIYETVNSLKRMME-RGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRP 311
           +G D I      L  M +  G  P    +          +++R A  +   M       P
Sbjct: 271 RGGD-ITSAQEQLSNMQKSHGLVPNAATYGPFLHAACASKDVRAALRVLDRMHTH-ALTP 328

Query: 312 DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLF 371
           +   YN +I L C   E   A  +LDE+   G  PD+ +YN L     K +++ +A  L 
Sbjct: 329 NVFTYNAVIRLLCDLGEINEAYNILDEITTQGEKPDVWSYNTLLNAHCKLKEVNKALRLI 388

Query: 372 NEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDM 431
           + M K     +  +    +++ +       AI+ W  M +      + T  +++ GL   
Sbjct: 389 SRMDKELCPPDRHSYNMLLKMLISVGRFDTAIEVWDGMEKRGFHPGAATYAVMIHGLASK 448

Query: 432 HMLPE-AVKYAKGMAEKGI 449
               E A  Y   M ++GI
Sbjct: 449 KGRAEDACSYFVRMVDEGI 467


>gi|357521609|ref|XP_003631093.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525115|gb|AET05569.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 788

 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 87/353 (24%), Positives = 157/353 (44%), Gaps = 12/353 (3%)

Query: 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDV 160
           + +  +++ L KN    A    ++ M+K +V  +L  ++++         V DA+     
Sbjct: 161 FTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQ 220

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERD 219
           + + G   D    NSL+   C  G+  +  Q L ++V   + PD+ T+ IL++   KE  
Sbjct: 221 IGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGR 280

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG-C--DGIYETVNSLKRMMERGCNPG 276
           +  A+     M+ + G  PD V  Y++    L++G C  + ++E      RM++RG  P 
Sbjct: 281 ILEAQGVLA-MMSKRGEKPDIV-TYNA----LMEGYCSRENVHEARELFNRMVKRGLEPD 334

Query: 277 MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLL 336
           +  + +  +     + +  A  ++  +  +    P    YN +I   C S       KLL
Sbjct: 335 VLNYNVLIDGYCKTKMVDEAMVLFKELCNK-NLVPTIASYNSLIDGLCNSGRISHVKKLL 393

Query: 337 DEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDS 396
           DEM  +   PD+ TYNIL + L K  ++ EA G+   M+K     N     A +  Y   
Sbjct: 394 DEMHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLR 453

Query: 397 DDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
           ++  VA   +  M+++         N+L+ G C   M+ EA+   K M  K +
Sbjct: 454 NNVNVAKDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNL 506



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 88/378 (23%), Positives = 155/378 (41%), Gaps = 50/378 (13%)

Query: 102 YAWNLVVDLLGKNC-LFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDV 160
           Y +N+++D L K   + +A        K+     + T+ ++   Y   + V +A   F+ 
Sbjct: 266 YTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNR 325

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAW-QFLRVVDGRIKPDNDTYAILLEGWEKERD 219
           M + G + DV   N L+   C+     +A   F  + +  + P   +Y  L++G      
Sbjct: 326 MVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGR 385

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDG-IYETVNSLKRMMERGCNPGMT 278
           +++ KK   EM       P +V  Y+  +  L K  +G I E +  L  MM++G  P + 
Sbjct: 386 ISHVKKLLDEM--HGSAQPPDVVTYNILIDALCK--EGRILEALGVLVMMMKKGVKPNIV 441

Query: 279 FFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAM----- 333
            +    +      N+  A+ I+  MV + G  PD   YN++I+ YC +     A+     
Sbjct: 442 TYNAMMDGYCLRNNVNVAKDIFNRMV-KSGLEPDILNYNVLINGYCKTEMVDEAIVLFKE 500

Query: 334 ------------------------------KLLDEMVYNGAFPDIQTYNILFEFLVKGRK 363
                                         +LLDEM  +G  PD+ TYNIL +   K + 
Sbjct: 501 MRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDVITYNILLDAFCKTQP 560

Query: 364 LWEASGLFNEMVKN---ENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSET 420
             +A  LF ++V+    +   NH    A V      +   +A    K+++ + CS   +T
Sbjct: 561 FDKAISLFRQIVEGIWPDFYTNH----AIVDNLCKGEKLKMAEDALKHLLMHGCSPNVQT 616

Query: 421 GNLLVAGLCDMHMLPEAV 438
             +L+  LC      EA+
Sbjct: 617 YTILINALCKDGSFGEAM 634



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 90/394 (22%), Positives = 157/394 (39%), Gaps = 32/394 (8%)

Query: 81  PGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGK-------------NCLFDAMWDAIKSM 127
           P P   F +     +   H P A +L   L  K             NC F     A    
Sbjct: 52  PPPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSIATFTILINCYFHQSHTAFAFS 111

Query: 128 KKENVL------SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAIC 181
               +L      +L TF ++ + + +   +  A+     +   G   D F   +L++ + 
Sbjct: 112 LLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQNLLAQGYLFDQFTYGTLINGLS 171

Query: 182 RDGKTIDAWQFLRVVD-GRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDN 240
           ++G+   A   L+ ++   ++P+   Y+ L++G  K+  V++A     + + E G   D 
Sbjct: 172 KNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQ-IGERGILLDA 230

Query: 241 VPAYDSYLITLLKGCDGI---YETVNSLKRMMERGCNPG-MTFFKLAFEECLTGQNLRGA 296
           V  Y+S    L+ GC  +    E    L +M+    +P   TF  L    C  G+ L   
Sbjct: 231 V-TYNS----LIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEAQ 285

Query: 297 EFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFE 356
             +  AM+ + G +PD   YN ++  YC       A +L + MV  G  PD+  YN+L +
Sbjct: 286 GVL--AMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLID 343

Query: 357 FLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSD 416
              K + + EA  LF E+     V    +  + +    +S       K    M  +    
Sbjct: 344 GYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPP 403

Query: 417 LSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQ 450
              T N+L+  LC    + EA+     M +KG++
Sbjct: 404 DVVTYNILIDALCKEGRILEALGVLVMMMKKGVK 437



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 67/311 (21%), Positives = 128/311 (41%), Gaps = 40/311 (12%)

Query: 104 WNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVME 162
           +N+++D   K  + D      K +  +N++ ++A++ S+      + R+       D M 
Sbjct: 338 YNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMH 397

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVA 221
                 DV   N L+ A+C++G+ ++A   L ++  + +KP+  TY  +++G+    +V 
Sbjct: 398 GSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVN 457

Query: 222 NAKKTFGEMVIEVGWDPD----------------------------------NVPAYDSY 247
            AK  F  MV + G +PD                                  ++ +Y+S 
Sbjct: 458 VAKDIFNRMV-KSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNS- 515

Query: 248 LITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRI 307
           LI  L     I      L  M + G +P +  + +  +     Q    A  ++  +V   
Sbjct: 516 LIDGLCNLGRIPHVQELLDEMCDSGQSPDVITYNILLDAFCKTQPFDKAISLFRQIVE-- 573

Query: 308 GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEA 367
           G  PD +  + ++   C   +   A   L  ++ +G  P++QTY IL   L K     EA
Sbjct: 574 GIWPDFYTNHAIVDNLCKGEKLKMAEDALKHLLMHGCSPNVQTYTILINALCKDGSFGEA 633

Query: 368 SGLFNEMVKNE 378
             L ++M  N+
Sbjct: 634 MLLLSKMEDND 644



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 64/275 (23%), Positives = 120/275 (43%), Gaps = 7/275 (2%)

Query: 103 AWNLVVDLLGKNC-LFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVM 161
            +N+++D L K   + +A+   +  MKK    ++ T+ ++   Y + + V  A   F+ M
Sbjct: 407 TYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRM 466

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDV 220
            + G + D+   N L++  C+     +A    + +  + + PD  +Y  L++G      +
Sbjct: 467 VKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRI 526

Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFF 280
            + ++   EM  + G  PD V  Y+  L    K     ++   SL R +  G  P     
Sbjct: 527 PHVQELLDEMC-DSGQSPD-VITYNILLDAFCK--TQPFDKAISLFRQIVEGIWPDFYTN 582

Query: 281 KLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMV 340
               +    G+ L+ AE     ++   G  P+   Y ++I+  C     G AM LL +M 
Sbjct: 583 HAIVDNLCKGEKLKMAEDALKHLLMH-GCSPNVQTYTILINALCKDGSFGEAMLLLSKME 641

Query: 341 YNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
            N   PD  T+ I+   L++  +  +A  L  EM+
Sbjct: 642 DNDRPPDAITFEIIIGVLLQRNETDKAEKLREEMI 676



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 74/345 (21%), Positives = 129/345 (37%), Gaps = 42/345 (12%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           S+ATF  + + Y        A +    + + G + ++   N++++  C +G    A  F 
Sbjct: 89  SIATFTILINCYFHQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFC 148

Query: 194 R--VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITL 251
           +  +  G +  D  TY  L+ G  K   +  A     EM  E      N+  Y + +   
Sbjct: 149 QNLLAQGYLF-DQFTYGTLINGLSKNGQIKAALHLLQEM--EKSSVQPNLVMYSALI--- 202

Query: 252 LKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRP 311
               DG+              C  G  F   A   C              + +G  G   
Sbjct: 203 ----DGL--------------CKDG--FVSDALGLC--------------SQIGERGILL 228

Query: 312 DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLF 371
           D   YN +I   C         +LL +MV     PD  T+NIL + L K  ++ EA G+ 
Sbjct: 229 DAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVL 288

Query: 372 NEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDM 431
             M K     +     A +  Y   ++ + A + +  M++          N+L+ G C  
Sbjct: 289 AMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKT 348

Query: 432 HMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELL 476
            M+ EA+   K +  K +  T  + + L   L  + + +  ++LL
Sbjct: 349 KMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLL 393


>gi|356524676|ref|XP_003530954.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g12700, mitochondrial-like
           [Glycine max]
          Length = 555

 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 73/246 (29%), Positives = 125/246 (50%), Gaps = 13/246 (5%)

Query: 134 SLATFASVFSSYVVADRVKDAIT-TFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQF 192
           ++ TF ++ + + +   V  A+    D+M + G   D F+  SL++ +C++G+T DA Q 
Sbjct: 124 NMVTFNTLINGFCINGMVSKAMAFRLDLMAK-GYPLDEFSYGSLINGLCKNGQTRDALQL 182

Query: 193 L-RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITL 251
           L ++ +  ++P+  TY+ +++G  K+R +A+A + F  +V   G   D V AY+S    L
Sbjct: 183 LQKMEEDLVRPNLITYSTVIDGLCKDRLIADALRLF-SLVTSRGILVD-VVAYNS----L 236

Query: 252 LKGC--DGIYETVNSLKRMMERG-CNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIG 308
           + GC   G +     L  MM RG  NP    F +  +       +  A+ ++  M+ R G
Sbjct: 237 IHGCCSVGQWREATRLLTMMVRGNINPDDYTFNILVDALCKEGRIVEAQGVFAVMMKR-G 295

Query: 309 FRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEAS 368
            +PD   YN ++  +C SN    A +L + MV  G  PD+  YN+L     K   + EA 
Sbjct: 296 EKPDIVTYNALMEGFCLSNNVSEARELFNRMVKRGLEPDVLNYNVLINGYCKIDMVDEAM 355

Query: 369 GLFNEM 374
            LF E+
Sbjct: 356 VLFKEI 361



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 73/283 (25%), Positives = 133/283 (46%), Gaps = 18/283 (6%)

Query: 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKK--ENVL--SLATFASVFSSYVVADRVKDAITT 157
           +++  +++ L KN       DA++ ++K  E+++  +L T+++V         + DA+  
Sbjct: 161 FSYGSLINGLCKN---GQTRDALQLLQKMEEDLVRPNLITYSTVIDGLCKDRLIADALRL 217

Query: 158 FDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRV-VDGRIKPDNDTYAILLEGWEK 216
           F ++   G   DV A NSL+   C  G+  +A + L + V G I PD+ T+ IL++   K
Sbjct: 218 FSLVTSRGILVDVVAYNSLIHGCCSVGQWREATRLLTMMVRGNINPDDYTFNILVDALCK 277

Query: 217 ERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG---CDGIYETVNSLKRMMERGC 273
           E  +  A+  F  M ++ G  PD V  Y++    L++G    + + E      RM++RG 
Sbjct: 278 EGRIVEAQGVFAVM-MKRGEKPDIV-TYNA----LMEGFCLSNNVSEARELFNRMVKRGL 331

Query: 274 NPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAM 333
            P +  + +          +  A  ++  +  +    P+   YN +I   C         
Sbjct: 332 EPDVLNYNVLINGYCKIDMVDEAMVLFKEIRCK-NLVPNLATYNSLIDGLCKLGRMSCVQ 390

Query: 334 KLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK 376
           +L+DEM   G  PDI TYNI  +   K +   +A  LF ++V+
Sbjct: 391 ELVDEMCDRGQSPDIVTYNIFLDAFCKSKPYEKAISLFRQIVQ 433



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/244 (25%), Positives = 109/244 (44%), Gaps = 8/244 (3%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRV 195
           TF  +  +     R+ +A   F VM + G K D+   N+L+   C      +A + F R+
Sbjct: 267 TFNILVDALCKEGRIVEAQGVFAVMMKRGEKPDIVTYNALMEGFCLSNNVSEARELFNRM 326

Query: 196 VDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
           V   ++PD   Y +L+ G+ K   V  A   F E  I       N+  Y+S +  L K  
Sbjct: 327 VKRGLEPDVLNYNVLINGYCKIDMVDEAMVLFKE--IRCKNLVPNLATYNSLIDGLCKL- 383

Query: 256 DGIYETVNSL-KRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTH 314
            G    V  L   M +RG +P +  + +  +     +    A  ++  +V   G  PD +
Sbjct: 384 -GRMSCVQELVDEMCDRGQSPDIVTYNIFLDAFCKSKPYEKAISLFRQIVQ--GIWPDFY 440

Query: 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
           MY++++  +C   +   A + L  ++ +G  P+++TY I+   L K     EA  L ++M
Sbjct: 441 MYDVIVENFCKGEKLKIAEEALQHLLIHGCCPNVRTYTIMINALCKDCSFDEAMTLLSKM 500

Query: 375 VKNE 378
             N+
Sbjct: 501 DDND 504



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 71/303 (23%), Positives = 124/303 (40%), Gaps = 14/303 (4%)

Query: 74  LKFSYSHPGPAVKF-FRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENV 132
           L F++S  G  +K  F+ +    N   + +  N +V          AM   +  M K   
Sbjct: 106 LSFAFSLLGTILKMGFQPNMVTFNTLINGFCINGMVS--------KAMAFRLDLMAKGYP 157

Query: 133 LSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQF 192
           L   ++ S+ +      + +DA+     ME+   + ++   ++++  +C+D    DA + 
Sbjct: 158 LDEFSYGSLINGLCKNGQTRDALQLLQKMEEDLVRPNLITYSTVIDGLCKDRLIADALRL 217

Query: 193 LRVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITL 251
             +V  R I  D   Y  L+ G         A +    M++    +PD+     + L+  
Sbjct: 218 FSLVTSRGILVDVVAYNSLIHGCCSVGQWREATRLL-TMMVRGNINPDDYTF--NILVDA 274

Query: 252 LKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRP 311
           L     I E       MM+RG  P +  +    E      N+  A  ++  MV R G  P
Sbjct: 275 LCKEGRIVEAQGVFAVMMKRGEKPDIVTYNALMEGFCLSNNVSEARELFNRMVKR-GLEP 333

Query: 312 DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLF 371
           D   YN++I+ YC  +    AM L  E+      P++ TYN L + L K  ++     L 
Sbjct: 334 DVLNYNVLINGYCKIDMVDEAMVLFKEIRCKNLVPNLATYNSLIDGLCKLGRMSCVQELV 393

Query: 372 NEM 374
           +EM
Sbjct: 394 DEM 396



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 127/290 (43%), Gaps = 12/290 (4%)

Query: 102 YAWNLVVDLLGKNC-LFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDV 160
           Y +N++VD L K   + +A       MK+     + T+ ++   + +++ V +A   F+ 
Sbjct: 266 YTFNILVDALCKEGRIVEAQGVFAVMMKRGEKPDIVTYNALMEGFCLSNNVSEARELFNR 325

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERD 219
           M + G + DV   N L++  C+     +A    + +  + + P+  TY  L++G  K   
Sbjct: 326 MVKRGLEPDVLNYNVLINGYCKIDMVDEAMVLFKEIRCKNLVPNLATYNSLIDGLCKLGR 385

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTF 279
           ++  ++   EM  + G  PD V  Y+ +L    K     YE   SL R + +G  P    
Sbjct: 386 MSCVQELVDEMC-DRGQSPDIV-TYNIFLDAFCKS--KPYEKAISLFRQIVQGIWPDFYM 441

Query: 280 FKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEM 339
           + +  E    G+ L+ AE     ++   G  P+   Y +MI+  C       AM LL +M
Sbjct: 442 YDVIVENFCKGEKLKIAEEALQHLLIH-GCCPNVRTYTIMINALCKDCSFDEAMTLLSKM 500

Query: 340 VYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM-----VKNENVLNHE 384
             N   PD  T+  +   L +  +  +A  L  EM     V +E  L HE
Sbjct: 501 DDNDCPPDAVTFETIIGALQERNETDKAEKLRLEMIERGLVNDEARLVHE 550


>gi|147862640|emb|CAN81487.1| hypothetical protein VITISV_033285 [Vitis vinifera]
          Length = 1024

 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 80/320 (25%), Positives = 138/320 (43%), Gaps = 5/320 (1%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           ++  ++ +  +Y    R+++A    D M   G   D+F  N+++S + + GK  +A  +L
Sbjct: 472 NVVVYSILIMAYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYL 531

Query: 194 RVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
             + GR +KPD  T+   + G+ K   +  A K F EM ++ G  P+N P Y + LI   
Sbjct: 532 LEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEM-LDHGLMPNN-PLY-TVLINGH 588

Query: 253 KGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD 312
                + E ++  +R+   G  P +          L    ++ A  ++  +  + G  PD
Sbjct: 589 FKAGNLMEALSIFRRLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEK-GLVPD 647

Query: 313 THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFN 372
              Y+ +IS +C   E   A +L DEM   G  P+I  YN L + L K   +  A  LF+
Sbjct: 648 VFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFD 707

Query: 373 EMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMH 432
            M +     +       +  Y  S++   A   +  M        S   N LV G C   
Sbjct: 708 GMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEG 767

Query: 433 MLPEAVKYAKGMAEKGIQVT 452
            + +A+   + M +KG   T
Sbjct: 768 DMEKAMNLFREMLQKGFATT 787



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 77/305 (25%), Positives = 131/305 (42%), Gaps = 11/305 (3%)

Query: 150 RVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYA 208
           RV++A+  F  +++ G   DVF  +SL+S  C+ G+   A++    +    I P+   Y 
Sbjct: 628 RVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYN 687

Query: 209 ILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRM 268
            L++G  K  D+  A+K F  M  E G +PD+V  Y + +    K  + + E  +    M
Sbjct: 688 ALVDGLCKSGDIQRARKLFDGMP-EKGLEPDSV-TYSTMIDGYCKS-ENVAEAFSLFHEM 744

Query: 269 MERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNE 328
             +G  P    +      C    ++  A  ++  M+ + GF   T  +N +I  YC S +
Sbjct: 745 PSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQK-GF-ATTLSFNTLIDGYCKSCK 802

Query: 329 TGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRA 388
              A +L  EM+     PD  TY  + ++  K  K+ EA+ LF EM +   +++     +
Sbjct: 803 IQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTS 862

Query: 389 AVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKY-----AKG 443
            +  Y            ++ M+         T  L++   C    L EA K       KG
Sbjct: 863 LMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKG 922

Query: 444 MAEKG 448
           M  KG
Sbjct: 923 MLTKG 927



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 81/339 (23%), Positives = 145/339 (42%), Gaps = 18/339 (5%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           T++S+ S +     V+ A    D M   G   ++F  N+L+  +C+ G   D  +  ++ 
Sbjct: 650 TYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSG---DIQRARKLF 706

Query: 197 DGR----IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
           DG     ++PD+ TY+ +++G+ K  +VA A   F EM  + G  P +   Y++    L+
Sbjct: 707 DGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSK-GVQPHSF-VYNA----LV 760

Query: 253 KGC--DGIYE-TVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGF 309
            GC  +G  E  +N  + M+++G    ++F  L    C + + ++ A  ++  M+ +   
Sbjct: 761 HGCCKEGDMEKAMNLFREMLQKGFATTLSFNTLIDGYCKSCK-IQEASQLFQEMIAK-QI 818

Query: 310 RPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASG 369
            PD   Y  +I  +C + +   A  L  EM       D  TY  L     K  +  E   
Sbjct: 819 MPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGYNKLGQSSEVFA 878

Query: 370 LFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLC 429
           LF +MV      +       +  +   D+   A K    ++           +LL+  LC
Sbjct: 879 LFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALC 938

Query: 430 DMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARK 468
               L EA K    M E G++ +  A + L +   +A K
Sbjct: 939 KREDLTEASKLLDEMGELGLKPSLAACNTLVRSFHEAGK 977



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 71/286 (24%), Positives = 125/286 (43%), Gaps = 29/286 (10%)

Query: 102 YAWNLVVDLLGKNC-------LFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDA 154
           + +N +VD L K+        LFD M +  K ++ ++V    T++++   Y  ++ V +A
Sbjct: 684 FIYNALVDGLCKSGDIQRARKLFDGMPE--KGLEPDSV----TYSTMIDGYCKSENVAEA 737

Query: 155 ITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGW 214
            + F  M   G +   F  N+L+   C++G    A    R +  +      ++  L++G+
Sbjct: 738 FSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATTLSFNTLIDGY 797

Query: 215 EKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD-GIYETVNSL-KRMMERG 272
            K   +  A + F EM+ +       +P + +Y   +   C  G  E  N L K M ER 
Sbjct: 798 CKSCKIQEASQLFQEMIAK-----QIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERN 852

Query: 273 CNPGMTFFKLAFEECLTGQNLRGAE----FIWGAMVGRIGFRPDTHMYNMMISLYCYSNE 328
               +    + +   + G N  G       ++  MV + G +PD   Y ++I  +C  + 
Sbjct: 853 ----LIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAK-GVKPDEVTYGLVIYAHCKEDN 907

Query: 329 TGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
              A KL DE+V  G       +++L   L K   L EAS L +EM
Sbjct: 908 LVEAFKLRDEVVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEM 953



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 79/366 (21%), Positives = 145/366 (39%), Gaps = 44/366 (12%)

Query: 139 ASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVD 197
           +++   ++    + + +   DVM   G   ++   N L+  +C+ GK   A + L+ +V 
Sbjct: 337 SALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMVT 396

Query: 198 GRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSY--LITLLKGC 255
              KP++ T+ +L+EG+ +E ++  A +   EM        + VP+  SY  +I  L  C
Sbjct: 397 LGCKPNSRTFCLLIEGYCREHNMGRALELLDEM-----EKRNLVPSAVSYGAMINGLCHC 451

Query: 256 DGIYETVNSLKRMMERGCNPGMTFFKLAF---------EEC---LTGQNLRGAE---FIW 300
             +      L++M   G  P +  + +           EE    L G +  G     F +
Sbjct: 452 KDLSLANKLLEKMTFSGLKPNVVVYSILIMAYASEGRIEEARRLLDGMSCSGVAPDIFCY 511

Query: 301 GAMV--------------------GRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMV 340
            A++                    GR G +PD   +   I  Y  + +   A K  DEM+
Sbjct: 512 NAIISCLSKAGKMEEASTYLLEIQGR-GLKPDAVTFGAFILGYSKTGKMTEAAKYFDEML 570

Query: 341 YNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPY 400
            +G  P+   Y +L     K   L EA  +F  +     + + + C A +   + +    
Sbjct: 571 DHGLMPNNPLYTVLINGHFKAGNLMEALSIFRRLHALGVLPDVQTCSAFIHGLLKNGRVQ 630

Query: 401 VAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLK 460
            A+K +  + E        T + L++G C    + +A +    M  KGI    F  + L 
Sbjct: 631 EALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALV 690

Query: 461 QILIKA 466
             L K+
Sbjct: 691 DGLCKS 696



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 78/173 (45%), Gaps = 2/173 (1%)

Query: 278 TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLD 337
           T+  L    C TG +LRGA+ +   M  + G  P+  +Y+++I   C   +   A++L  
Sbjct: 230 TYTYLVGALCKTG-DLRGAKRVLIEMDEK-GLNPNEFIYSLVIEGMCQVGDIDEAVELKR 287

Query: 338 EMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSD 397
            M   G  P+  TY I+   L + +++ EA   F EM K     ++  C A +  +M   
Sbjct: 288 SMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREG 347

Query: 398 DPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQ 450
           D    ++    M+         T N+L+ GLC    + +A +  KGM   G +
Sbjct: 348 DIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMVTLGCK 400



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 62/274 (22%), Positives = 121/274 (44%), Gaps = 11/274 (4%)

Query: 105 NLVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASVFSSYVVADRVKDAITTFDVMEQ 163
           +L+ DLL K  + +  W     M    +   + T+  +  +      ++ A      M++
Sbjct: 198 SLLKDLL-KCGMMELFWKVYNGMLDAKMGFDVYTYTYLVGALCKTGDLRGAKRVLIEMDE 256

Query: 164 YGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVAN 222
            G   + F  + ++  +C+ G   +A +  R +  + + P+  TY I+  G  + + +  
Sbjct: 257 KGLNPNEFIYSLVIEGMCQVGDIDEAVELKRSMGEKGLVPNTYTYTIITAGLCRAKRMNE 316

Query: 223 AKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNP--GMTFF 280
           AK TF EM  + G  PD   A  + +   ++  +G  + V  +K +M     P   +T+ 
Sbjct: 317 AKLTFEEMQ-KTGLKPD-YNACSALIDGFMR--EGDIDEVLRIKDVMVSCGIPINLITYN 372

Query: 281 KLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMV 340
            L    C  G+  + AE + G +   +G +P++  + ++I  YC  +  G A++LLDEM 
Sbjct: 373 VLIHGLCKFGKMEKAAEILKGMVT--LGCKPNSRTFCLLIEGYCREHNMGRALELLDEME 430

Query: 341 YNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
                P   +Y  +   L   + L  A+ L  +M
Sbjct: 431 KRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKM 464



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 52/225 (23%), Positives = 98/225 (43%), Gaps = 5/225 (2%)

Query: 151 VKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDA-WQFLRVVDGRIKPDNDTYAI 209
           + +A+     M + G   + +    + + +CR  +  +A   F  +    +KPD +  + 
Sbjct: 279 IDEAVELKRSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSA 338

Query: 210 LLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMM 269
           L++G+ +E D+    +   ++++  G  P N+  Y+  +  L K    + +    LK M+
Sbjct: 339 LIDGFMREGDIDEVLR-IKDVMVSCGI-PINLITYNVLIHGLCK-FGKMEKAAEILKGMV 395

Query: 270 ERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNET 329
             GC P    F L  E      N+  A  +   M  R    P    Y  MI+  C+  + 
Sbjct: 396 TLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKR-NLVPSAVSYGAMINGLCHCKDL 454

Query: 330 GAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
             A KLL++M ++G  P++  Y+IL        ++ EA  L + M
Sbjct: 455 SLANKLLEKMTFSGLKPNVVVYSILIMAYASEGRIEEARRLLDGM 499



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 86/417 (20%), Positives = 159/417 (38%), Gaps = 58/417 (13%)

Query: 81  PGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFAS 140
           P   + FF WS  Q+       +++++   L  + LF      +  M +    S +   S
Sbjct: 86  PKRLLDFFYWSQSQMGVPQFLDSFSILAVQLCNSELFGLANGVLTQMIRTPYSSSSILDS 145

Query: 141 VF--------SSYVVADRVKDAITTFDVMEQ-----YGCKHDVFAL-----NSLLSAICR 182
           V         SS VV D + D+     ++++     +  K+D   +     NSLL  + +
Sbjct: 146 VLFWFRNYGGSSPVVFDILIDSYKRMGMLDEAANVFFVAKNDSILISLIRCNSLLKDLLK 205

Query: 183 DGKTIDAWQFLR-VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNV 241
            G     W+    ++D ++  D  TY  L+    K  D+  AK+   EM  E G +P+  
Sbjct: 206 CGMMELFWKVYNGMLDAKMGFDVYTYTYLVGALCKTGDLRGAKRVLIEMD-EKGLNPNEF 264

Query: 242 PAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWG 301
               S +I  +     I E V   + M E+G  P    + +        + +  A+  + 
Sbjct: 265 IY--SLVIEGMCQVGDIDEAVELKRSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFE 322

Query: 302 AMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKG 361
            M  + G +PD +  + +I  +    +    +++ D MV  G   ++ TYN+L   L K 
Sbjct: 323 EM-QKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCK- 380

Query: 362 RKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETG 421
                    F +M K   +L                         K M+   C   S T 
Sbjct: 381 ---------FGKMEKAAEIL-------------------------KGMVTLGCKPNSRTF 406

Query: 422 NLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKK 478
            LL+ G C  H +  A++    M ++ +  +  +   +   L   +  ++  +LL+K
Sbjct: 407 CLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEK 463


>gi|224123678|ref|XP_002319139.1| predicted protein [Populus trichocarpa]
 gi|222857515|gb|EEE95062.1| predicted protein [Populus trichocarpa]
          Length = 518

 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 96/420 (22%), Positives = 163/420 (38%), Gaps = 55/420 (13%)

Query: 40  KTLCEIIANTPSPTVE--DVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLND 97
           KT+  I+  +    VE    +++  I+VSQE V +VL    +    A  FF W+A Q   
Sbjct: 26  KTIVNILQESCDNRVEMKSKIEQCGIKVSQELVLEVLSRVRNDWEAAFTFFLWAARQPGY 85

Query: 98  KHSPYAWNLVVDLLGKNCLFDAMWDAIKSMK----KENVLSLATFASVFSSYVVADRVKD 153
            HS   ++ ++ +LGK   FD  W  I  M+      ++++  T   +   Y     V  
Sbjct: 86  AHSVREYHSMISILGKMRKFDTAWVLIDEMRGVKTGVSLVTPQTLLIMIRKYCAVHDVGR 145

Query: 154 AITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEG 213
           AI TF   +++     +    SLLSA+CR     DA Q +         +  ++ I+L G
Sbjct: 146 AINTFYAYKRFKFDMGIEEFQSLLSALCRYKNVQDAEQLMYCNKAVFPLNTKSFNIVLNG 205

Query: 214 W----EKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMM 269
           W       R+     +   +  I       +V +Y S +++       +Y  +   K+M 
Sbjct: 206 WCNLIGSPRESERVWREMSKRGIRF-----DVVSYAS-MMSCYSKAGSLYRVLRLYKQMK 259

Query: 270 ERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNET 329
           + G                                      PD  +YN +I         
Sbjct: 260 KIG------------------------------------IEPDRKVYNAVIHALAKGRLV 283

Query: 330 GAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAA 389
             A  L+  M   G  P+I TYN L + L + RK+ EA G F++M+K           A 
Sbjct: 284 NEAFNLMKTMEEKGVAPNIVTYNSLIKPLCRARKVEEAKGAFDDMLKRCISPTIRTYHAF 343

Query: 390 VRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
           +R+    ++ +  ++  + M    C  +++T  +L+   C    L    K    M+E GI
Sbjct: 344 LRILRTGEEVFALLEKMRKM---GCQPINDTYIMLIRKFCRWRQLENVFKLWDEMSENGI 400


>gi|326504802|dbj|BAK06692.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 522

 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 102/399 (25%), Positives = 162/399 (40%), Gaps = 37/399 (9%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVME 162
           A++ VVD LG+   FDA W  +     +   +  TFA +   YV A   + A+  FD ME
Sbjct: 116 AYDAVVDALGRAHQFDAAWRLVVEAAADGAATPRTFAVLARRYVAAGLTRQAVRAFDDME 175

Query: 163 QY-GCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVA 221
            + G + D     +LL  +C+      A +       + +P+   Y IL+ GW K     
Sbjct: 176 AFLGREPDAQEFTTLLDTLCKYKYPKVAVEVFNKRKYKYEPNEKMYTILIYGWCKVNRSD 235

Query: 222 NAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC----DGIYE-TVNS----LKRMMERG 272
            A+K   +M I+ G +P N+  Y+  L  + +      D  ++ TVN+    LK M +RG
Sbjct: 236 MAQKFLKDM-IDHGIEP-NIVTYNILLNGICRHASLHPDNRFDRTVNAAENLLKEMNDRG 293

Query: 273 CNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAA 332
             P +T + +                ++ +M  R G  P    Y  +I           A
Sbjct: 294 IEPDVTSYSIILHVYSRAHKAELCLCMFRSMKDR-GICPTVATYTSVIKCLASCGRLEDA 352

Query: 333 MKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASG---LFNEM----------VKNEN 379
             LL EMV  G  P   TYN  F+   +GRK  + SG   L+N+M          + + N
Sbjct: 353 ESLLGEMVSEGVCPSPATYNCFFK-EYRGRK--DVSGALELYNKMKAPCSPTAPDIHSYN 409

Query: 380 VLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVK 439
           +L        + +++  D     ++ W  M E       ++  LLV G C      EA +
Sbjct: 410 IL--------LGMFIKLDRHETVMELWNDMCERAVGPDLDSYTLLVHGFCAKEKWREACQ 461

Query: 440 YAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKK 478
           +   M EKG            + LI+A     +  L K+
Sbjct: 462 FFMEMIEKGFLPQKITFETPYRGLIQADMLRTWRRLKKR 500


>gi|110289336|gb|ABG66168.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
          Length = 484

 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 92/379 (24%), Positives = 158/379 (41%), Gaps = 21/379 (5%)

Query: 81  PGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCL-------FDAMWDAIKSMKKENVL 133
           P  AV  +   A    D+ +P      + L+G  C        F A+ + IK   + + +
Sbjct: 69  PAAAVSRYNRMARAGADEVTPNLCTYGI-LIGSCCCAGRLDLGFAALGNVIKKGFRVDAI 127

Query: 134 SLATFASVFSSYVVADRVKDAI-TTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQF 192
           +   F  +        R  DA+      M Q GC  +VF+ N LL  +C + ++ +A + 
Sbjct: 128 A---FTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALEL 184

Query: 193 LRVV---DGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLI 249
           L+++    G   PD  +Y  ++ G+ KE D+  A  T+ EM ++ G  P NV  Y S + 
Sbjct: 185 LQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEM-LDRGILP-NVVTYSSIIA 242

Query: 250 TLLKGCDGIYETVNSLKRMMERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIG 308
            L K    + + +  L  M++ G  P   T+  +    C +GQ      F+    +   G
Sbjct: 243 ALCKA-QAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFL--KKMHSDG 299

Query: 309 FRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEAS 368
             PD   YN ++   C +     A K+ D M   G  P+I TY  L +       L E  
Sbjct: 300 VEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMH 359

Query: 369 GLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGL 428
           GL + MV+N    NH      +  Y        A+  +  M +   +  + T   ++  L
Sbjct: 360 GLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGIL 419

Query: 429 CDMHMLPEAVKYAKGMAEK 447
           C    + +A++Y + M ++
Sbjct: 420 CKSGRVEDAMRYFEQMIDE 438



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 71/307 (23%), Positives = 120/307 (39%), Gaps = 14/307 (4%)

Query: 152 KDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDG---RIKPDNDTYA 208
           +DA   FD + + G    ++ LN  L+ + R        ++ R+       + P+  TY 
Sbjct: 36  EDARHVFDELLRRGRGASIYGLNCALADVARHSPAAAVSRYNRMARAGADEVTPNLCTYG 95

Query: 209 ILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNS---- 264
           IL+        +       G  VI+ G+  D +         LLKG      T ++    
Sbjct: 96  ILIGSCCCAGRLDLGFAALGN-VIKKGFRVDAIA-----FTPLLKGLCADKRTSDAMDIV 149

Query: 265 LKRMMERGCNPGMTFFKLAFEE-CLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLY 323
           L+RM + GC P +  + +  +  C   ++    E +           PD   Y  +I+ +
Sbjct: 150 LRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGF 209

Query: 324 CYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNH 383
               +   A     EM+  G  P++ TY+ +   L K + + +A  +   MVKN  + N 
Sbjct: 210 FKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNC 269

Query: 384 ENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKG 443
               + V  Y  S  P  AI F K M  +       T N L+  LC      EA K    
Sbjct: 270 RTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDS 329

Query: 444 MAEKGIQ 450
           M ++G++
Sbjct: 330 MTKRGLK 336



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 58/257 (22%), Positives = 98/257 (38%), Gaps = 41/257 (15%)

Query: 104 WNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVME 162
           ++ ++  L K    D   + + SM K  V+ +  T+ S+   Y  + + K+AI     M 
Sbjct: 237 YSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMH 296

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVA 221
             G + DV   NSL+  +C++G+  +A +    +  R +KP+  TY  LL+G+       
Sbjct: 297 SDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYA------ 350

Query: 222 NAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFK 281
               T G +V                            E    L  M+  G +P    F 
Sbjct: 351 ----TKGALV----------------------------EMHGLLDLMVRNGIHPNHYVFS 378

Query: 282 LAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVY 341
           +          +  A  ++  M  + G  PDT  Y  +I + C S     AM+  ++M+ 
Sbjct: 379 ILICAYAKQGKVDQAMLVFSKMRQQ-GLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMID 437

Query: 342 NGAFPDIQTYNILFEFL 358
               P    YN L   L
Sbjct: 438 ERLSPGNIVYNSLIHSL 454


>gi|18071404|gb|AAL58263.1|AC068923_5 putative membrane-associated protein [Oryza sativa Japonica Group]
          Length = 1219

 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 92/379 (24%), Positives = 158/379 (41%), Gaps = 21/379 (5%)

Query: 81  PGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCL-------FDAMWDAIKSMKKENVL 133
           P  AV  +   A    D+ +P      + L+G  C        F A+ + IK   + + +
Sbjct: 69  PAAAVSRYNRMARAGADEVTPNLCTYGI-LIGSCCCAGRLDLGFAALGNVIKKGFRVDAI 127

Query: 134 SLATFASVFSSYVVADRVKDAI-TTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQF 192
           +   F  +        R  DA+      M Q GC  +VF+ N LL  +C + ++ +A + 
Sbjct: 128 A---FTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALEL 184

Query: 193 LRVV---DGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLI 249
           L+++    G   PD  +Y  ++ G+ KE D+  A  T+ EM ++ G  P NV  Y S + 
Sbjct: 185 LQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEM-LDRGILP-NVVTYSSIIA 242

Query: 250 TLLKGCDGIYETVNSLKRMMERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIG 308
            L K    + + +  L  M++ G  P   T+  +    C +GQ      F+    +   G
Sbjct: 243 ALCKA-QAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFL--KKMHSDG 299

Query: 309 FRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEAS 368
             PD   YN ++   C +     A K+ D M   G  P+I TY  L +       L E  
Sbjct: 300 VEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMH 359

Query: 369 GLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGL 428
           GL + MV+N    NH      +  Y        A+  +  M +   +  + T   ++  L
Sbjct: 360 GLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGIL 419

Query: 429 CDMHMLPEAVKYAKGMAEK 447
           C    + +A++Y + M ++
Sbjct: 420 CKSGRVEDAMRYFEQMIDE 438



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 97/421 (23%), Positives = 180/421 (42%), Gaps = 33/421 (7%)

Query: 77  SYSHPGPAVKFFRWSAYQLNDKHSP--YAWNLVVDLLGKN--C-----LFDAMWDAIKSM 127
           S   P  A+ F +      +D   P    +N ++D L KN  C     +FD+M    + +
Sbjct: 281 SSGQPKEAIGFLK---KMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTK--RGL 335

Query: 128 KKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTI 187
           K E    + T+ ++   Y     + +     D+M + G   + +  + L+ A  + GK  
Sbjct: 336 KPE----ITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVD 391

Query: 188 DAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDS 246
            A   F ++    + PD  TY  ++    K   V +A + F +M+ E    P N+  Y+S
Sbjct: 392 QAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDER-LSPGNI-VYNS 449

Query: 247 YLITLLKGCDGIYETVNSLKR----MMERG-CNPGMTFFKLAFEECLTGQNLRGAEFIWG 301
            + +L      I++  +  K     M++RG C   + F  +    C  G+ +  +E ++ 
Sbjct: 450 LIHSLC-----IFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIE-SEKLFD 503

Query: 302 AMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKG 361
            MV RIG +PD   Y+ +I  YC + +   A KLL  MV  G  PD  TYN L     K 
Sbjct: 504 LMV-RIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKI 562

Query: 362 RKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETG 421
            ++ +A  LF EM  +    +       ++    +     A + +  + E+       T 
Sbjct: 563 SRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTY 622

Query: 422 NLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKCKA 481
           N+++ GLC  ++  EA++  + +    +Q+     + +   L+K  +    ++L     A
Sbjct: 623 NIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSA 682

Query: 482 H 482
           +
Sbjct: 683 N 683



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 87/351 (24%), Positives = 148/351 (42%), Gaps = 26/351 (7%)

Query: 88  FRWSAYQLNDKHSPYAWNLVVD-LLGKNCLFDAMWDAIKSMKKENV-----LSLATFASV 141
            R+    ++++ SP   N+V + L+   C+FD  WD  K +  E +     L    F S+
Sbjct: 429 MRYFEQMIDERLSP--GNIVYNSLIHSLCIFDK-WDKAKELILEMLDRGICLDTIFFNSI 485

Query: 142 FSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRI 200
             S+    RV ++   FD+M + G K D+   ++L+   C  GK  +A + L  +V   +
Sbjct: 486 IDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGM 545

Query: 201 KPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYE 260
           KPD  TY  L+ G+ K   + +A   F EM    G  PD +    +Y I L     G+++
Sbjct: 546 KPDCVTYNTLINGYCKISRMEDALVLFREME-SSGVSPDII----TYNIIL----QGLFQ 596

Query: 261 TVNSLKR------MMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTH 314
           T  +         + E G    ++ + +     L   NL          +     + +T 
Sbjct: 597 TRRTAAAKELYVGITESGTQLELSTYNIILHG-LCKNNLTDEALRMFQNLCLTDLQLETR 655

Query: 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
            +N+MI           A  L   +  NG  PD++TY+++ E L++   L E   LF  M
Sbjct: 656 TFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSM 715

Query: 375 VKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLV 425
            +N    N     + VR  +   D   A  +   + E H S  + T +L +
Sbjct: 716 EENGCTANSRMLNSIVRKLLQRGDITRAGTYLFMIDEKHFSLEASTASLFL 766



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 71/307 (23%), Positives = 120/307 (39%), Gaps = 14/307 (4%)

Query: 152 KDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDG---RIKPDNDTYA 208
           +DA   FD + + G    ++ LN  L+ + R        ++ R+       + P+  TY 
Sbjct: 36  EDARHVFDELLRRGRGASIYGLNCALADVARHSPAAAVSRYNRMARAGADEVTPNLCTYG 95

Query: 209 ILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNS---- 264
           IL+        +       G  VI+ G+  D +         LLKG      T ++    
Sbjct: 96  ILIGSCCCAGRLDLGFAALGN-VIKKGFRVDAIA-----FTPLLKGLCADKRTSDAMDIV 149

Query: 265 LKRMMERGCNPGMTFFKLAFEE-CLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLY 323
           L+RM + GC P +  + +  +  C   ++    E +           PD   Y  +I+ +
Sbjct: 150 LRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGF 209

Query: 324 CYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNH 383
               +   A     EM+  G  P++ TY+ +   L K + + +A  +   MVKN  + N 
Sbjct: 210 FKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNC 269

Query: 384 ENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKG 443
               + V  Y  S  P  AI F K M  +       T N L+  LC      EA K    
Sbjct: 270 RTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDS 329

Query: 444 MAEKGIQ 450
           M ++G++
Sbjct: 330 MTKRGLK 336


>gi|357499681|ref|XP_003620129.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495144|gb|AES76347.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 543

 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 86/355 (24%), Positives = 156/355 (43%), Gaps = 25/355 (7%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           TF ++     +  ++  A+   D +   G + D     +L+  +C+ G+T  A   LR V
Sbjct: 129 TFTTLIKGLCLKGQIHQALLFHDNVVAMGFQLDQVGYGTLIHGLCKVGETRAALDLLRRV 188

Query: 197 DGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
           DG  ++P+   Y+ +++G  K++ V +A   + EMV + G  P NV  Y S LI+     
Sbjct: 189 DGNLVQPNVVMYSTIIDGMCKDKHVNDAFDLYSEMVSK-GISP-NVVTY-SALISGFFTV 245

Query: 256 DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHM 315
             + + ++   +M+     P +  F +  +       ++  + ++ AM+ + G +P+   
Sbjct: 246 GQLKDAIDLFNKMILENIKPDVYTFNILVDGFCKDGKMKEGKTVF-AMMMKQGIKPNVVT 304

Query: 316 YNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM- 374
           Y  ++  YC   E   A  +L  M   G  PDIQ+YNIL +   K +K+ EA  LF EM 
Sbjct: 305 YCSLMDGYCLVKEVNKAKSILYTMSQRGVNPDIQSYNILIDGFCKIKKVDEAMNLFKEMH 364

Query: 375 -------VKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAG 427
                  V   N L    C+     Y        A+K    M +        T + ++  
Sbjct: 365 HKHIIPDVVTYNSLIDGLCKLGKISY--------ALKLVDEMHDRGVPPDIITYSSILDA 416

Query: 428 LCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARK----EAVYEELLKK 478
           LC  H + +A+     + ++GI+   +  + L   L K  +      ++E+LL K
Sbjct: 417 LCKNHQVDKAIALLTKLKDQGIRPNMYTYTILIDGLCKGGRLEDAHNIFEDLLVK 471



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 84/342 (24%), Positives = 156/342 (45%), Gaps = 31/342 (9%)

Query: 104 WNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVME 162
           ++ ++D + K+   +  +D    M  + +  ++ T++++ S +    ++KDAI  F+ M 
Sbjct: 200 YSTIIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFTVGQLKDAIDLFNKMI 259

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDVA 221
               K DV+  N L+   C+DGK  +    F  ++   IKP+  TY  L++G+   ++V 
Sbjct: 260 LENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKEVN 319

Query: 222 NAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPG-MTFF 280
            AK     M  + G +PD + +Y+  LI        + E +N  K M  +   P  +T+ 
Sbjct: 320 KAKSILYTMS-QRGVNPD-IQSYN-ILIDGFCKIKKVDEAMNLFKEMHHKHIIPDVVTYN 376

Query: 281 KLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMV 340
            L    C  G+ +  A  +   M  R G  PD   Y+ ++   C +++   A+ LL ++ 
Sbjct: 377 SLIDGLCKLGK-ISYALKLVDEMHDR-GVPPDIITYSSILDALCKNHQVDKAIALLTKLK 434

Query: 341 YNGAFPDIQTYNILFEFLVKGRKLWEASGLFNE-MVKNENVLNHENCRAAVRVYMDSDDP 399
             G  P++ TY IL + L KG +L +A  +F + +VK  N                    
Sbjct: 435 DQGIRPNMYTYTILIDGLCKGGRLEDAHNIFEDLLVKGYN-------------------- 474

Query: 400 YVAIKFWKYMIENHCSD-LSETGNLLVAGLCDMHMLPEAVKY 440
            + +  +  MI   C+  L +    L++ + D   +P+AV Y
Sbjct: 475 -ITVNTYTVMIHGFCNKGLFDEALALLSKMKDNSCIPDAVTY 515



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 67/265 (25%), Positives = 114/265 (43%), Gaps = 6/265 (2%)

Query: 96  NDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDA 154
           N K   Y +N++VD   K+            M K+ +  ++ T+ S+   Y +   V  A
Sbjct: 262 NIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKEVNKA 321

Query: 155 ITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEG 213
            +    M Q G   D+ + N L+   C+  K  +A    + +  + I PD  TY  L++G
Sbjct: 322 KSILYTMSQRGVNPDIQSYNILIDGFCKIKKVDEAMNLFKEMHHKHIIPDVVTYNSLIDG 381

Query: 214 WEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGC 273
             K   ++ A K   EM  + G  PD +  Y S L  L K    + + +  L ++ ++G 
Sbjct: 382 LCKLGKISYALKLVDEMH-DRGVPPD-IITYSSILDALCKN-HQVDKAIALLTKLKDQGI 438

Query: 274 NPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAM 333
            P M  + +  +    G  L  A  I+  ++ + G+    + Y +MI  +C       A+
Sbjct: 439 RPNMYTYTILIDGLCKGGRLEDAHNIFEDLLVK-GYNITVNTYTVMIHGFCNKGLFDEAL 497

Query: 334 KLLDEMVYNGAFPDIQTYNILFEFL 358
            LL +M  N   PD  TY I+   L
Sbjct: 498 ALLSKMKDNSCIPDAVTYEIIIRSL 522


>gi|15221515|ref|NP_176447.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213223|sp|Q9SXD8.1|PPR90_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62590
 gi|5454201|gb|AAD43616.1|AC005698_15 T3P18.15 [Arabidopsis thaliana]
 gi|332195860|gb|AEE33981.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 634

 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 79/333 (23%), Positives = 150/333 (45%), Gaps = 5/333 (1%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           TF ++     + ++  +A+   D M Q GC+ ++     +++ +C+ G T  A   L  +
Sbjct: 192 TFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKM 251

Query: 197 DG-RIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
           +  +I+ D   +  +++   K R V +A   F EM  + G  P NV  Y S LI+ L   
Sbjct: 252 EAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETK-GIRP-NVVTYSS-LISCLCSY 308

Query: 256 DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHM 315
               +    L  M+E+  NP +  F    +  +       AE ++  M+ R    PD   
Sbjct: 309 GRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKR-SIDPDIFT 367

Query: 316 YNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
           YN +++ +C  +    A ++ + MV    FPD+ TYN L +   K +++ + + LF EM 
Sbjct: 368 YNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMS 427

Query: 376 KNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLP 435
               V +       ++      D   A K +K M+ +       T ++L+ GLC+   L 
Sbjct: 428 HRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLE 487

Query: 436 EAVKYAKGMAEKGIQVTPFALSKLKQILIKARK 468
           +A++    M +  I++  +  + + + + KA K
Sbjct: 488 KALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGK 520



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 64/274 (23%), Positives = 109/274 (39%), Gaps = 40/274 (14%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           T+ S+ + + + DR+  A   F+ M    C  DV   N+L+   C+  +  D  +  R +
Sbjct: 367 TYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREM 426

Query: 197 DGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
             R +  D  TY  L++G   + D  NA+K F +MV + G  PD +    +Y I L    
Sbjct: 427 SHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSD-GVPPDIM----TYSILL---- 477

Query: 256 DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHM 315
           DG+              CN G                L  A  ++  M  +   + D ++
Sbjct: 478 DGL--------------CNNG---------------KLEKALEVFDYM-QKSEIKLDIYI 507

Query: 316 YNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
           Y  MI   C + +      L   +   G  P++ TYN +   L   R L EA  L  +M 
Sbjct: 508 YTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMK 567

Query: 376 KNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYM 409
           ++  + N       +R ++   D   + +  + M
Sbjct: 568 EDGPLPNSGTYNTLIRAHLRDGDKAASAELIREM 601



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 98/405 (24%), Positives = 158/405 (39%), Gaps = 91/405 (22%)

Query: 104 WNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVME 162
           +N ++D L K    D   +  K M+ + +  ++ T++S+ S      R  DA      M 
Sbjct: 263 FNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMI 322

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERDVA 221
           +     ++   N+L+ A  ++GK ++A +    ++   I PD  TY  L+ G+     + 
Sbjct: 323 EKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLD 382

Query: 222 NAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG-CDGIYETVNSLKRMMERGCNPGMTFF 280
            AK+ F E ++     PD V  Y+    TL+KG C          KR+ +     G   F
Sbjct: 383 KAKQMF-EFMVSKDCFPD-VVTYN----TLIKGFCKS--------KRVED-----GTELF 423

Query: 281 KLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMV 340
           +      L G                     DT  Y  +I    +  +   A K+  +MV
Sbjct: 424 REMSHRGLVG---------------------DTVTYTTLIQGLFHDGDCDNAQKVFKQMV 462

Query: 341 YNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPY 400
            +G  PDI TY+IL + L    KL +A  +F+ M K+E  L+                  
Sbjct: 463 SDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLD------------------ 504

Query: 401 VAIKFWKYMIENHCS------------DLSETG--------NLLVAGLCDMHMLPEAVKY 440
             I  +  MIE  C              LS  G        N +++GLC   +L EA   
Sbjct: 505 --IYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYAL 562

Query: 441 AKGMAEKGIQVTPFALSKLKQILIKAR----KEAVYEELLKKCKA 481
            K M E G    P   S     LI+A      +A   EL+++ ++
Sbjct: 563 LKKMKEDG----PLPNSGTYNTLIRAHLRDGDKAASAELIREMRS 603



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 53/221 (23%), Positives = 91/221 (41%), Gaps = 11/221 (4%)

Query: 265 LKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYC 324
           L +MM+ G  P +            G+ +  A  +   MV  +G+RPDT  +  +I    
Sbjct: 143 LGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMV-EMGYRPDTITFTTLIHGLF 201

Query: 325 YSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNE---NVL 381
             N+   A+ L+D MV  G  P++ TY ++   L K      A  L N+M   +   +V+
Sbjct: 202 LHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVV 261

Query: 382 NHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYA 441
                  ++  Y   DD   A+  +K M          T + L++ LC      +A +  
Sbjct: 262 IFNTIIDSLCKYRHVDD---ALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLL 318

Query: 442 KGMAEKGIQVTPFALSKLKQILIKARK----EAVYEELLKK 478
             M EK I       + L    +K  K    E +Y++++K+
Sbjct: 319 SDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKR 359



 Score = 39.7 bits (91), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 28/129 (21%), Positives = 56/129 (43%)

Query: 301 GAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVK 360
           G  + R+      + YN++I+ +C  ++   A+ LL +M+  G  P I T + L      
Sbjct: 108 GEKMQRLEIVHGLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCH 167

Query: 361 GRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSET 420
           G+++ +A  L ++MV+     +       +      +    A+     M++  C     T
Sbjct: 168 GKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVT 227

Query: 421 GNLLVAGLC 429
             ++V GLC
Sbjct: 228 YGVVVNGLC 236


>gi|302767472|ref|XP_002967156.1| hypothetical protein SELMODRAFT_144844 [Selaginella moellendorffii]
 gi|300165147|gb|EFJ31755.1| hypothetical protein SELMODRAFT_144844 [Selaginella moellendorffii]
          Length = 651

 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 78/320 (24%), Positives = 138/320 (43%), Gaps = 19/320 (5%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           T+  +   +  A  +  AI   + M+  G + +     +L+  +C  G+ ++A +  R +
Sbjct: 11  TYGILIRGFSSAGDLDIAIQLLEEMKSNGFEGNAVVHTTLMKGLCDAGRVVEALEHFRAM 70

Query: 197 DGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD 256
                PD  TY  L+    K      A+    EM+   G  PD V  + + +  L K   
Sbjct: 71  AKDCAPDVMTYTALVHALCKAGKFDEAQGMLREMIAR-GCAPDTV-TFSTLIDGLCK--- 125

Query: 257 GIYETVNSLKRMMERGCNPGMTFFKLAFEE-----CLTGQNLRGAEFIWGAMVGRIGFRP 311
             + +     R++E     GM     AFE      C    ++  A  + G ++ + GF P
Sbjct: 126 --FGSEEQAFRVLEDVIQRGMGNSDAAFETIIQRLCNKYNSVELASKVLGVVIAK-GFTP 182

Query: 312 DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLF 371
              M+N++I+ +C + +  +A KLL+ M+  G  P++ T+ IL   L K  ++ EA  L 
Sbjct: 183 TVLMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLL 242

Query: 372 NEMVK---NENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGL 428
            +MV    + NV+ +      +      DD Y   + ++ M   +C     T N+L+ GL
Sbjct: 243 EKMVTGGCSPNVVTYSTVINGLCKQGQVDDAY---ELFQLMERRNCPPNVVTHNILIDGL 299

Query: 429 CDMHMLPEAVKYAKGMAEKG 448
           C    + EA +    M E G
Sbjct: 300 CKAKRIEEARQLYHRMRETG 319



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 80/311 (25%), Positives = 139/311 (44%), Gaps = 21/311 (6%)

Query: 148 ADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDT 206
           A RV +A+  F  M +  C  DV    +L+ A+C+ GK  +A   LR +  R   PD  T
Sbjct: 57  AGRVVEALEHFRAMAK-DCAPDVMTYTALVHALCKAGKFDEAQGMLREMIARGCAPDTVT 115

Query: 207 YAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLK 266
           ++ L++G  K      A +   E VI+ G    +  A+++ +  L    + +      L 
Sbjct: 116 FSTLIDGLCKFGSEEQAFRVL-EDVIQRGMGNSDA-AFETIIQRLCNKYNSVELASKVLG 173

Query: 267 RMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYS 326
            ++ +G  P +  F L        ++L  A  +   M+ + G  P+   + ++I+  C +
Sbjct: 174 VVIAKGFTPTVLMFNLVINGFCKAKDLDSAYKLLEVMIEK-GCVPNVFTFTILITGLCKA 232

Query: 327 NETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM--------VKNE 378
           N  G A +LL++MV  G  P++ TY+ +   L K  ++ +A  LF  M        V   
Sbjct: 233 NRVGEAQQLLEKMVTGGCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTH 292

Query: 379 NVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAV 438
           N+L    C+A  R+         A + +  M E  C+    T N L+ GLC    + EA 
Sbjct: 293 NILIDGLCKAK-RIEE-------ARQLYHRMRETGCAPDIITYNSLIDGLCKSFQVDEAF 344

Query: 439 KYAKGMAEKGI 449
           +  + + E G+
Sbjct: 345 QLFQTIPESGV 355



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 69/275 (25%), Positives = 133/275 (48%), Gaps = 9/275 (3%)

Query: 104 WNLVVDLLGKNCLFDAMWDAIKSM-KKENVLSLATFASVFSSYVVADRVKDAITTFDVME 162
           +NLV++   K    D+ +  ++ M +K  V ++ TF  + +    A+RV +A    + M 
Sbjct: 187 FNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLLEKMV 246

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDN-DTYAILLEGWEKERDVA 221
             GC  +V   +++++ +C+ G+  DA++  ++++ R  P N  T+ IL++G  K + + 
Sbjct: 247 TGGCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILIDGLCKAKRIE 306

Query: 222 NAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNP--GMTF 279
            A++ +  M  E G  PD +  Y+S +  L K    + E     + + E G +    +T+
Sbjct: 307 EARQLYHRMR-ETGCAPD-IITYNSLIDGLCKSFQ-VDEAFQLFQTIPESGVSAANAVTY 363

Query: 280 FKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEM 339
             L       G+ +  A  I+  +V + GF PD   Y  +I  YC ++     ++L++EM
Sbjct: 364 STLFHGYAALGR-MADACRIFSMLVDK-GFSPDLATYTSLILEYCKTSRAVEVVELVEEM 421

Query: 340 VYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
              G  P + T + +   L +G     A  LF+ M
Sbjct: 422 ASKGFPPRVNTLSAVLGGLFEGNHTERAIQLFDSM 456



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 55/225 (24%), Positives = 90/225 (40%), Gaps = 14/225 (6%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RV 195
           T ++V       +  + AI  FD M   GC  D    N ++  + R  K   A   L +V
Sbjct: 432 TLSAVLGGLFEGNHTERAIQLFDSMAARGCTDDALIYNLVVEGMARASKHNKALAVLEQV 491

Query: 196 VDGR---IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
           +D R     P +     L+E   +     +AK+   +M  E G+    V +Y+     LL
Sbjct: 492 IDKRDRKFNPSSSAVDALVESLCQVGRTDDAKQLLHKMS-ERGFAA-AVSSYNG----LL 545

Query: 253 KGCDGIY---ETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGF 309
            G   +    E     + M+  G  P ++   +      +   +  A  +   M  ++G 
Sbjct: 546 SGLSRLQRWDEATQVFEAMVSAGPAPEISTVNVVISWLCSAAKVDDAYELVQRM-SKLGC 604

Query: 310 RPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNIL 354
            PD    N +I  YC S     A KLL+EM   G  P+  T+++L
Sbjct: 605 CPDIETCNTLIGGYCKSGRADLARKLLEEMTEAGLEPNDTTHDLL 649



 Score = 45.1 bits (105), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 63/283 (22%), Positives = 106/283 (37%), Gaps = 51/283 (18%)

Query: 202 PDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG-CDGIYE 260
           P+  TY IL+ G+    D+  A +   EM    G++ + V        TL+KG CD    
Sbjct: 7   PNKFTYGILIRGFSSAGDLDIAIQLLEEMKSN-GFEGNAV-----VHTTLMKGLCDA--- 57

Query: 261 TVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMI 320
                 R++E      +  F+   ++C                       PD   Y  ++
Sbjct: 58  -----GRVVE-----ALEHFRAMAKDC----------------------APDVMTYTALV 85

Query: 321 SLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENV 380
              C + +   A  +L EM+  G  PD  T++ L + L K     +A  +  ++++    
Sbjct: 86  HALCKAGKFDEAQGMLREMIARGCAPDTVTFSTLIDGLCKFGSEEQAFRVLEDVIQR--- 142

Query: 381 LNHENCRAAVRVYMDS-----DDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLP 435
               N  AA    +       +   +A K    +I    +      NL++ G C    L 
Sbjct: 143 -GMGNSDAAFETIIQRLCNKYNSVELASKVLGVVIAKGFTPTVLMFNLVINGFCKAKDLD 201

Query: 436 EAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKK 478
            A K  + M EKG     F  + L   L KA +    ++LL+K
Sbjct: 202 SAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLLEK 244


>gi|413952239|gb|AFW84888.1| hypothetical protein ZEAMMB73_407218 [Zea mays]
          Length = 668

 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 74/312 (23%), Positives = 135/312 (43%), Gaps = 10/312 (3%)

Query: 169 DVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKP-DNDTYAILLEGWEKERDVANAKKTF 227
           DV+    L+  +CR G+T DA + LR  +G   P D   Y  L+ G+ +   +  A++  
Sbjct: 74  DVYLCTKLIRNLCRRGRTSDAARVLRAAEGSGSPVDVFAYNTLVAGYCRYGHLDAARRLI 133

Query: 228 GEMVIEVGWDPDNVPAYD-SYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEE 286
           G M +     PD   AY  + LI +L     + + ++ L  M+ RGC P +  + +  E 
Sbjct: 134 GSMPVA----PD---AYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLLEA 186

Query: 287 CLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFP 346
                    A  +   M  + G  P+   YN++I+  C       A  LL+ +   G  P
Sbjct: 187 MCKNSGFEQAMAVLDEMRAK-GCTPNIVTYNVIINGMCREGRVDDARDLLNRLFSYGCQP 245

Query: 347 DIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFW 406
           D  +Y  L + L   ++  +   LF EM++   + N       +R +        AI+  
Sbjct: 246 DTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVL 305

Query: 407 KYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKA 466
           + M E+ C+  +   N+++  +C    + +A K+   M   G      + + + + L +A
Sbjct: 306 QQMTEHECATNTTLCNIVINSICKQGRVDDAFKFLNNMGSYGCNPDTISYTTVLKGLCRA 365

Query: 467 RKEAVYEELLKK 478
            +    +ELLK+
Sbjct: 366 ERWNDAKELLKE 377



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 63/265 (23%), Positives = 123/265 (46%), Gaps = 17/265 (6%)

Query: 121 WDAIKS-----MKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNS 175
           WD ++      M+K  + +  TF  +   +     V+ AI     M ++ C  +    N 
Sbjct: 263 WDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLQQMTEHECATNTTLCNI 322

Query: 176 LLSAICRDGKTIDAWQFLRVVDG-RIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEV 234
           ++++IC+ G+  DA++FL  +      PD  +Y  +L+G  +     +AK+   EMV   
Sbjct: 323 VINSICKQGRVDDAFKFLNNMGSYGCNPDTISYTTVLKGLCRAERWNDAKELLKEMV--R 380

Query: 235 GWDPDNVPAYDSYLITLLKGCDGIYE-TVNSLKRMMERGCNPG-MTFFKLAFEECLTGQN 292
              P N   +++++  L +   G+ E  +  +++M E GC  G +T+  L    C+ G  
Sbjct: 381 NNCPPNEVTFNTFICILCQ--KGLIEQAIMLIEQMQEHGCTVGVVTYNALVNGFCVQGHI 438

Query: 293 LRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYN 352
               E         +  +P+T  Y  +++  C +    AA +L+ EM++    P++ T+N
Sbjct: 439 DSALELFRS-----MPCKPNTITYTTLLTGLCNAERLDAAAELVAEMLHRDCPPNVVTFN 493

Query: 353 ILFEFLVKGRKLWEASGLFNEMVKN 377
           +L  F  +   L EA  L  +M+++
Sbjct: 494 VLVNFFCQKGFLDEAIELVEQMMEH 518



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 88/337 (26%), Positives = 136/337 (40%), Gaps = 15/337 (4%)

Query: 150 RVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYA 208
           RV DA++  D M + GC+ +V     LL A+C++     A   L  +  +   P+  TY 
Sbjct: 157 RVADALSLLDDMLRRGCQPNVVTYTVLLEAMCKNSGFEQAMAVLDEMRAKGCTPNIVTYN 216

Query: 209 ILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG--CDGIYETVNSL- 265
           +++ G  +E  V +A+     +    G  PD V    SY  TLLKG      ++ V  L 
Sbjct: 217 VIINGMCREGRVDDARDLLNRL-FSYGCQPDTV----SY-TTLLKGLCASKRWDDVEELF 270

Query: 266 KRMMERGCNPG-MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYC 324
             MME+ C P  +TF  L    C  G   R  + +            +T + N++I+  C
Sbjct: 271 AEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLQQMTEHECA--TNTTLCNIVINSIC 328

Query: 325 YSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHE 384
                  A K L+ M   G  PD  +Y  + + L +  +  +A  L  EMV+N    N  
Sbjct: 329 KQGRVDDAFKFLNNMGSYGCNPDTISYTTVLKGLCRAERWNDAKELLKEMVRNNCPPNEV 388

Query: 385 NCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGM 444
                + +         AI   + M E+ C+    T N LV G C    +  A++  + M
Sbjct: 389 TFNTFICILCQKGLIEQAIMLIEQMQEHGCTVGVVTYNALVNGFCVQGHIDSALELFRSM 448

Query: 445 AEK--GIQVTPFALSKLKQILIKARKEAVYEELLKKC 479
             K   I  T           + A  E V E L + C
Sbjct: 449 PCKPNTITYTTLLTGLCNAERLDAAAELVAEMLHRDC 485



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 72/317 (22%), Positives = 132/317 (41%), Gaps = 12/317 (3%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           ++ T+  +  +       + A+   D M   GC  ++   N +++ +CR+G+  DA   L
Sbjct: 176 NVVTYTVLLEAMCKNSGFEQAMAVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARDLL 235

Query: 194 -RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
            R+     +PD  +Y  LL+G    +   + ++ F EM +E    P+ V  +D  +    
Sbjct: 236 NRLFSYGCQPDTVSYTTLLKGLCASKRWDDVEELFAEM-MEKNCMPNEV-TFDMLIRFFC 293

Query: 253 KGCDGIYE-TVNSLKRMMERGCNPGMTFFKLAFEE-CLTGQNLRGAEFIWGAMVGRIGFR 310
           +G  G+ E  +  L++M E  C    T   +     C  G+     +F+    +G  G  
Sbjct: 294 RG--GMVERAIQVLQQMTEHECATNTTLCNIVINSICKQGRVDDAFKFLNN--MGSYGCN 349

Query: 311 PDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGL 370
           PDT  Y  ++   C +     A +LL EMV N   P+  T+N     L +   + +A  L
Sbjct: 350 PDTISYTTVLKGLCRAERWNDAKELLKEMVRNNCPPNEVTFNTFICILCQKGLIEQAIML 409

Query: 371 FNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCD 430
             +M ++   +      A V  +        A++ ++ M    C   + T   L+ GLC+
Sbjct: 410 IEQMQEHGCTVGVVTYNALVNGFCVQGHIDSALELFRSM---PCKPNTITYTTLLTGLCN 466

Query: 431 MHMLPEAVKYAKGMAEK 447
              L  A +    M  +
Sbjct: 467 AERLDAAAELVAEMLHR 483



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 71/291 (24%), Positives = 114/291 (39%), Gaps = 44/291 (15%)

Query: 121 WDAIKSMKKENVLS-----LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNS 175
           W+  K + KE V +       TF +          ++ AI   + M+++GC   V   N+
Sbjct: 368 WNDAKELLKEMVRNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMQEHGCTVGVVTYNA 427

Query: 176 LLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVG 235
           L++  C  G    A +  R +    KP+  TY  LL G      +  A +   EM+    
Sbjct: 428 LVNGFCVQGHIDSALELFRSMP--CKPNTITYTTLLTGLCNAERLDAAAELVAEMLHRDC 485

Query: 236 WDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFE---------- 285
             P NV  ++  L+        + E +  +++MME GC P +  +   F+          
Sbjct: 486 --PPNVVTFN-VLVNFFCQKGFLDEAIELVEQMMEHGCTPNLITYNTLFDGITKDCSSED 542

Query: 286 --ECLTGQNLRGAE---FIWGAMVG-------------------RIGFRPDTHMYNMMIS 321
             E L G   +G       + +++G                    IG RP   +YN ++ 
Sbjct: 543 ALELLHGLVSKGVSPDVITFSSIIGILSKEDRVEEAIQMFHLAQDIGMRPKALVYNKILL 602

Query: 322 LYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFN 372
             C  +E   A+  L  MV NG  P+  TY IL E L +   L EA  L +
Sbjct: 603 GLCKRHEIDNAIDFLAYMVSNGCMPNESTYIILIEGLAREGLLKEAQDLLS 653


>gi|242070015|ref|XP_002450284.1| hypothetical protein SORBIDRAFT_05g003220 [Sorghum bicolor]
 gi|241936127|gb|EES09272.1| hypothetical protein SORBIDRAFT_05g003220 [Sorghum bicolor]
          Length = 727

 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 94/356 (26%), Positives = 155/356 (43%), Gaps = 22/356 (6%)

Query: 104 WNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVME 162
           +N ++  L K+   +A       M+   +L  L T+ S+ + Y  A  +K+A+     + 
Sbjct: 352 YNAIIHGLLKSEQVEAAQLKFAEMRAMGLLPDLITYNSMLNGYCKAGNLKEALWLLGDLR 411

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYAILLEGWEKERDVA 221
           + G    V   N+L+   CR G   +A +    +V+    PD  TY IL+ G  K R++ 
Sbjct: 412 RAGLAPTVLTYNTLIDGYCRLGGLEEARRLKEEMVEQGCFPDVCTYTILMNGSHKVRNLP 471

Query: 222 NAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFK 281
            A++ F EM+ + G  PD   AY++ +   L   D  ++     + MM +G  P    + 
Sbjct: 472 MAREFFDEMLSK-GLQPDCF-AYNTRICAELILGD-THKAFQLREVMMLKGIYPDTVTYN 528

Query: 282 LAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVY 341
           +  +      NL+ A+ +   MV   G +PD   Y  +I  +C       A KLL+ MV 
Sbjct: 529 VIIDGLCKTGNLKDAKDLKMKMVSD-GLQPDCITYTCLIHAHCERGLLSEARKLLNGMVS 587

Query: 342 NGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV-----KNE---NVLNHENCRAAVRVY 393
           +G  P + TY IL     +   L+ A G F +M+      NE   NVL H  CR      
Sbjct: 588 DGLQPSVVTYTILIHTCCRRGNLYSAYGWFRKMLDVGIEPNEITYNVLIHALCR------ 641

Query: 394 MDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
             +    +A   +  M+E   +    T  LL+ G C      +A++    M + GI
Sbjct: 642 --TGRTLLAYHHFHEMLERGLAPNKYTYTLLIDGNCREGNWADAIRLYFEMHQNGI 695



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 82/341 (24%), Positives = 139/341 (40%), Gaps = 15/341 (4%)

Query: 119 AMWDAIKSMKKENVL-----SLATFASVFSSYVVADRVKDAITTFDVMEQYG--CKHDVF 171
           A WD ++++ +E +      ++ T+ ++  S++   R  +A      ME  G  C  +  
Sbjct: 222 ARWDDVRAVYREMLQLEIEPTIVTYNTLLDSFLKEGRKDEASMLLKEMETQGGGCLLNDV 281

Query: 172 ALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMV 231
             N ++S + R+G   +A + +  +    K  + TY  L+    +   V   +    EM 
Sbjct: 282 TYNVVISFLAREGHLENAAKLVDSMRLSKKASSFTYNPLITALLERGFVQKVEALQMEME 341

Query: 232 IEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQ 291
            E G  P  V  Y++ +  LLK  + +         M   G  P +  +           
Sbjct: 342 NE-GIMPTLV-TYNAIIHGLLKS-EQVEAAQLKFAEMRAMGLLPDLITYNSMLNGYCKAG 398

Query: 292 NLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTY 351
           NL+ A ++ G +  R G  P    YN +I  YC       A +L +EMV  G FPD+ TY
Sbjct: 399 NLKEALWLLGDL-RRAGLAPTVLTYNTLIDGYCRLGGLEEARRLKEEMVEQGCFPDVCTY 457

Query: 352 NILFEFLVKGRKLWEASGLFNEMVKN--ENVLNHENCRAAVRVYMDSDDPYVAIKFWKYM 409
            IL     K R L  A   F+EM+    +      N R    + +   D + A +  + M
Sbjct: 458 TILMNGSHKVRNLPMAREFFDEMLSKGLQPDCFAYNTRICAELIL--GDTHKAFQLREVM 515

Query: 410 IENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQ 450
           +       + T N+++ GLC    L +A      M   G+Q
Sbjct: 516 MLKGIYPDTVTYNVIIDGLCKTGNLKDAKDLKMKMVSDGLQ 556



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 77/359 (21%), Positives = 134/359 (37%), Gaps = 76/359 (21%)

Query: 94  QLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVK 152
           +L+ K S + +N ++  L +      +      M+ E ++ +L T+ ++    + +++V+
Sbjct: 307 RLSKKASSFTYNPLITALLERGFVQKVEALQMEMENEGIMPTLVTYNAIIHGLLKSEQVE 366

Query: 153 DAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDA-WQFLRVVDGRIKPDNDTYAILL 211
            A   F  M   G   D+   NS+L+  C+ G   +A W    +    + P   TY  L+
Sbjct: 367 AAQLKFAEMRAMGLLPDLITYNSMLNGYCKAGNLKEALWLLGDLRRAGLAPTVLTYNTLI 426

Query: 212 EGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMER 271
           +G+ +   +  A++   EMV                                      E+
Sbjct: 427 DGYCRLGGLEEARRLKEEMV--------------------------------------EQ 448

Query: 272 GCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGA 331
           GC P +  + +        +NL  A   +  M+ + G +PD   YN  I       +T  
Sbjct: 449 GCFPDVCTYTILMNGSHKVRNLPMAREFFDEMLSK-GLQPDCFAYNTRICAELILGDTHK 507

Query: 332 AMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVR 391
           A +L + M+  G +PD  TYN++ + L K   L +A  L  +MV                
Sbjct: 508 AFQLREVMMLKGIYPDTVTYNVIIDGLCKTGNLKDAKDLKMKMV---------------- 551

Query: 392 VYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQ 450
               SD        +  +I  HC    E G           +L EA K   GM   G+Q
Sbjct: 552 ----SDGLQPDCITYTCLIHAHC----ERG-----------LLSEARKLLNGMVSDGLQ 591



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 93/207 (44%), Gaps = 11/207 (5%)

Query: 159 DVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQF-LRVVDGRIKPDNDTYAILLEGWEKE 217
           +VM   G   D    N ++  +C+ G   DA    +++V   ++PD  TY  L+    + 
Sbjct: 513 EVMMLKGIYPDTVTYNVIIDGLCKTGNLKDAKDLKMKMVSDGLQPDCITYTCLIHAHCER 572

Query: 218 RDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC--DGIYETVNSLKRMMERGCNP 275
             ++ A+K    MV + G  P  V    +Y I +   C    +Y      ++M++ G  P
Sbjct: 573 GLLSEARKLLNGMVSD-GLQPSVV----TYTILIHTCCRRGNLYSAYGWFRKMLDVGIEP 627

Query: 276 G-MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMK 334
             +T+  L    C TG+ L  A   +  M+ R G  P+ + Y ++I   C       A++
Sbjct: 628 NEITYNVLIHALCRTGRTLL-AYHHFHEMLER-GLAPNKYTYTLLIDGNCREGNWADAIR 685

Query: 335 LLDEMVYNGAFPDIQTYNILFEFLVKG 361
           L  EM  NG  PD  T+N LF+   KG
Sbjct: 686 LYFEMHQNGIPPDYCTHNALFKGFDKG 712



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 70/312 (22%), Positives = 121/312 (38%), Gaps = 45/312 (14%)

Query: 148 ADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVD---GRIKPDN 204
           A R  D    +  M Q   +  +   N+LL +  ++G+  +A   L+ ++   G    ++
Sbjct: 221 AARWDDVRAVYREMLQLEIEPTIVTYNTLLDSFLKEGRKDEASMLLKEMETQGGGCLLND 280

Query: 205 DTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNS 264
            TY +++    +E  + NA K    M +       +   Y+  +  LL+   G  + V +
Sbjct: 281 VTYNVVISFLAREGHLENAAKLVDSMRLS---KKASSFTYNPLITALLE--RGFVQKVEA 335

Query: 265 LKRMME-RGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLY 323
           L+  ME  G  P +  +       L  + +  A+  +  M   +G  PD   YN M++ Y
Sbjct: 336 LQMEMENEGIMPTLVTYNAIIHGLLKSEQVEAAQLKFAEMRA-MGLLPDLITYNSMLNGY 394

Query: 324 CYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNH 383
           C +     A+ LL ++   G  P + TYN L +   +   L EA  L  EMV+       
Sbjct: 395 CKAGNLKEALWLLGDLRRAGLAPTVLTYNTLIDGYCRLGGLEEARRLKEEMVE------- 447

Query: 384 ENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKG 443
           + C   V  Y                             +L+ G   +  LP A ++   
Sbjct: 448 QGCFPDVCTY----------------------------TILMNGSHKVRNLPMAREFFDE 479

Query: 444 MAEKGIQVTPFA 455
           M  KG+Q   FA
Sbjct: 480 MLSKGLQPDCFA 491


>gi|222613080|gb|EEE51212.1| hypothetical protein OsJ_32033 [Oryza sativa Japonica Group]
          Length = 1144

 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 92/379 (24%), Positives = 158/379 (41%), Gaps = 21/379 (5%)

Query: 81  PGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCL-------FDAMWDAIKSMKKENVL 133
           P  AV  +   A    D+ +P      + L+G  C        F A+ + IK   + + +
Sbjct: 69  PAAAVSRYNRMARAGADEVTPNLCTYGI-LIGSCCCAGRLDLGFAALGNVIKKGFRVDAI 127

Query: 134 SLATFASVFSSYVVADRVKDAI-TTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQF 192
           +   F  +        R  DA+      M Q GC  +VF+ N LL  +C + ++ +A + 
Sbjct: 128 A---FTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALEL 184

Query: 193 LRVV---DGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLI 249
           L+++    G   PD  +Y  ++ G+ KE D+  A  T+ EM ++ G  P NV  Y S + 
Sbjct: 185 LQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEM-LDRGILP-NVVTYSSIIA 242

Query: 250 TLLKGCDGIYETVNSLKRMMERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIG 308
            L K    + + +  L  M++ G  P   T+  +    C +GQ      F+    +   G
Sbjct: 243 ALCKA-QAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFL--KKMHSDG 299

Query: 309 FRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEAS 368
             PD   YN ++   C +     A K+ D M   G  P+I TY  L +       L E  
Sbjct: 300 VEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMH 359

Query: 369 GLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGL 428
           GL + MV+N    NH      +  Y        A+  +  M +   +  + T   ++  L
Sbjct: 360 GLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGIL 419

Query: 429 CDMHMLPEAVKYAKGMAEK 447
           C    + +A++Y + M ++
Sbjct: 420 CKSGRVEDAMRYFEQMIDE 438



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 97/421 (23%), Positives = 180/421 (42%), Gaps = 33/421 (7%)

Query: 77  SYSHPGPAVKFFRWSAYQLNDKHSP--YAWNLVVDLLGKN--C-----LFDAMWDAIKSM 127
           S   P  A+ F +      +D   P    +N ++D L KN  C     +FD+M    + +
Sbjct: 281 SSGQPKEAIGFLK---KMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTK--RGL 335

Query: 128 KKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTI 187
           K E    + T+ ++   Y     + +     D+M + G   + +  + L+ A  + GK  
Sbjct: 336 KPE----ITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVD 391

Query: 188 DAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDS 246
            A   F ++    + PD  TY  ++    K   V +A + F +M+ E    P N+  Y+S
Sbjct: 392 QAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDER-LSPGNI-VYNS 449

Query: 247 YLITLLKGCDGIYETVNSLKR----MMERG-CNPGMTFFKLAFEECLTGQNLRGAEFIWG 301
            + +L      I++  +  K     M++RG C   + F  +    C  G+ +  +E ++ 
Sbjct: 450 LIHSLC-----IFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIE-SEKLFD 503

Query: 302 AMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKG 361
            MV RIG +PD   Y+ +I  YC + +   A KLL  MV  G  PD  TYN L     K 
Sbjct: 504 LMV-RIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKI 562

Query: 362 RKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETG 421
            ++ +A  LF EM  +    +       ++    +     A + +  + E+       T 
Sbjct: 563 SRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTY 622

Query: 422 NLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKCKA 481
           N+++ GLC  ++  EA++  + +    +Q+     + +   L+K  +    ++L     A
Sbjct: 623 NIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSA 682

Query: 482 H 482
           +
Sbjct: 683 N 683



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 87/351 (24%), Positives = 148/351 (42%), Gaps = 26/351 (7%)

Query: 88  FRWSAYQLNDKHSPYAWNLVVD-LLGKNCLFDAMWDAIKSMKKENV-----LSLATFASV 141
            R+    ++++ SP   N+V + L+   C+FD  WD  K +  E +     L    F S+
Sbjct: 429 MRYFEQMIDERLSP--GNIVYNSLIHSLCIFDK-WDKAKELILEMLDRGICLDTIFFNSI 485

Query: 142 FSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRI 200
             S+    RV ++   FD+M + G K D+   ++L+   C  GK  +A + L  +V   +
Sbjct: 486 IDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGM 545

Query: 201 KPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYE 260
           KPD  TY  L+ G+ K   + +A   F EM    G  PD +    +Y I L     G+++
Sbjct: 546 KPDCVTYNTLINGYCKISRMEDALVLFREME-SSGVSPDII----TYNIIL----QGLFQ 596

Query: 261 TVNSLKR------MMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTH 314
           T  +         + E G    ++ + +     L   NL          +     + +T 
Sbjct: 597 TRRTAAAKELYVGITESGTQLELSTYNIILHG-LCKNNLTDEALRMFQNLCLTDLQLETR 655

Query: 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
            +N+MI           A  L   +  NG  PD++TY+++ E L++   L E   LF  M
Sbjct: 656 TFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSM 715

Query: 375 VKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLV 425
            +N    N     + VR  +   D   A  +   + E H S  + T +L +
Sbjct: 716 EENGCTANSRMLNSIVRKLLQRGDITRAGTYLFMIDEKHFSLEASTASLFL 766



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 71/307 (23%), Positives = 120/307 (39%), Gaps = 14/307 (4%)

Query: 152 KDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDG---RIKPDNDTYA 208
           +DA   FD + + G    ++ LN  L+ + R        ++ R+       + P+  TY 
Sbjct: 36  EDARHVFDELLRRGRGASIYGLNCALADVARHSPAAAVSRYNRMARAGADEVTPNLCTYG 95

Query: 209 ILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNS---- 264
           IL+        +       G  VI+ G+  D +         LLKG      T ++    
Sbjct: 96  ILIGSCCCAGRLDLGFAALGN-VIKKGFRVDAIA-----FTPLLKGLCADKRTSDAMDIV 149

Query: 265 LKRMMERGCNPGMTFFKLAFEE-CLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLY 323
           L+RM + GC P +  + +  +  C   ++    E +           PD   Y  +I+ +
Sbjct: 150 LRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGF 209

Query: 324 CYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNH 383
               +   A     EM+  G  P++ TY+ +   L K + + +A  +   MVKN  + N 
Sbjct: 210 FKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNC 269

Query: 384 ENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKG 443
               + V  Y  S  P  AI F K M  +       T N L+  LC      EA K    
Sbjct: 270 RTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDS 329

Query: 444 MAEKGIQ 450
           M ++G++
Sbjct: 330 MTKRGLK 336


>gi|22531122|gb|AAM97065.1| putative membrane-associated salt-inducible protein [Arabidopsis
           thaliana]
 gi|62320656|dbj|BAD95323.1| putative membrane-associated salt-inducible protein [Arabidopsis
           thaliana]
          Length = 596

 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 79/333 (23%), Positives = 150/333 (45%), Gaps = 5/333 (1%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           TF ++     + ++  +A+   D M Q GC+ ++     +++ +C+ G T  A   L  +
Sbjct: 154 TFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKM 213

Query: 197 DG-RIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
           +  +I+ D   +  +++   K R V +A   F EM  + G  P NV  Y S LI+ L   
Sbjct: 214 EAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETK-GIRP-NVVTYSS-LISCLCSY 270

Query: 256 DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHM 315
               +    L  M+E+  NP +  F    +  +       AE ++  M+ R    PD   
Sbjct: 271 GRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKR-SIDPDIFT 329

Query: 316 YNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
           YN +++ +C  +    A ++ + MV    FPD+ TYN L +   K +++ + + LF EM 
Sbjct: 330 YNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMS 389

Query: 376 KNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLP 435
               V +       ++      D   A K +K M+ +       T ++L+ GLC+   L 
Sbjct: 390 HRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLE 449

Query: 436 EAVKYAKGMAEKGIQVTPFALSKLKQILIKARK 468
           +A++    M +  I++  +  + + + + KA K
Sbjct: 450 KALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGK 482



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 64/274 (23%), Positives = 109/274 (39%), Gaps = 40/274 (14%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           T+ S+ + + + DR+  A   F+ M    C  DV   N+L+   C+  +  D  +  R +
Sbjct: 329 TYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREM 388

Query: 197 DGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
             R +  D  TY  L++G   + D  NA+K F +MV + G  PD +    +Y I L    
Sbjct: 389 SHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSD-GVPPDIM----TYSILL---- 439

Query: 256 DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHM 315
           DG+              CN G                L  A  ++  M  +   + D ++
Sbjct: 440 DGL--------------CNNG---------------KLEKALEVFDYM-QKSEIKLDIYI 469

Query: 316 YNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
           Y  MI   C + +      L   +   G  P++ TYN +   L   R L EA  L  +M 
Sbjct: 470 YTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMK 529

Query: 376 KNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYM 409
           ++  + N       +R ++   D   + +  + M
Sbjct: 530 EDGPLPNSGTYNTLIRAHLRDGDKAASAELIREM 563



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 99/405 (24%), Positives = 160/405 (39%), Gaps = 91/405 (22%)

Query: 104 WNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVME 162
           +N ++D L K    D   +  K M+ + +  ++ T++S+ S      R  DA      M 
Sbjct: 225 FNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMI 284

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERDVA 221
           +     ++   N+L+ A  ++GK ++A +    ++   I PD  TY  L+ G+     + 
Sbjct: 285 EKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLD 344

Query: 222 NAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG-CDGIYETVNSLKRMMERGCNPGMTFF 280
            AK+ F E ++     PD V  Y+    TL+KG C          KR+ +     G   F
Sbjct: 345 KAKQMF-EFMVSKDCFPD-VVTYN----TLIKGFCKS--------KRVED-----GTELF 385

Query: 281 KLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMV 340
           +               E     +VG      DT  Y  +I    +  +   A K+  +MV
Sbjct: 386 R---------------EMSHRGLVG------DTVTYTTLIQGLFHDGDCDNAQKVFKQMV 424

Query: 341 YNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPY 400
            +G  PDI TY+IL + L    KL +A  +F+ M K+E  L+                  
Sbjct: 425 SDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLD------------------ 466

Query: 401 VAIKFWKYMIENHCS------------DLSETG--------NLLVAGLCDMHMLPEAVKY 440
             I  +  MIE  C              LS  G        N +++GLC   +L EA   
Sbjct: 467 --IYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYAL 524

Query: 441 AKGMAEKGIQVTPFALSKLKQILIKAR----KEAVYEELLKKCKA 481
            K M E G    P   S     LI+A      +A   EL+++ ++
Sbjct: 525 LKKMKEDG----PLPNSGTYNTLIRAHLRDGDKAASAELIREMRS 565



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 53/221 (23%), Positives = 91/221 (41%), Gaps = 11/221 (4%)

Query: 265 LKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYC 324
           L +MM+ G  P +            G+ +  A  +   MV  +G+RPDT  +  +I    
Sbjct: 105 LGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMV-EMGYRPDTITFTTLIHGLF 163

Query: 325 YSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNE---NVL 381
             N+   A+ L+D MV  G  P++ TY ++   L K      A  L N+M   +   +V+
Sbjct: 164 LHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVV 223

Query: 382 NHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYA 441
                  ++  Y   DD   A+  +K M          T + L++ LC      +A +  
Sbjct: 224 IFNTIIDSLCKYRHVDD---ALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLL 280

Query: 442 KGMAEKGIQVTPFALSKLKQILIKARK----EAVYEELLKK 478
             M EK I       + L    +K  K    E +Y++++K+
Sbjct: 281 SDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKR 321



 Score = 39.3 bits (90), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 28/129 (21%), Positives = 56/129 (43%)

Query: 301 GAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVK 360
           G  + R+      + YN++I+ +C  ++   A+ LL +M+  G  P I T + L      
Sbjct: 70  GEKMQRLEIVHGLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCH 129

Query: 361 GRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSET 420
           G+++ +A  L ++MV+     +       +      +    A+     M++  C     T
Sbjct: 130 GKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVT 189

Query: 421 GNLLVAGLC 429
             ++V GLC
Sbjct: 190 YGVVVNGLC 198


>gi|356548144|ref|XP_003542463.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Glycine max]
          Length = 756

 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 88/354 (24%), Positives = 154/354 (43%), Gaps = 21/354 (5%)

Query: 136 ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR- 194
            TF ++ +       +K  +   D M + G + DV+  NSL+S +C+ G+  +A + L  
Sbjct: 303 VTFNALVNGLCRTGHIKQGLEMMDFMLEKGFELDVYTYNSLISGLCKLGEIDEAVEILHH 362

Query: 195 VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG 254
           +V    +P+  TY  L+    KE  V  A +    ++   G  PD V  ++S +      
Sbjct: 363 MVSRDCEPNTVTYNTLIGTLCKENHVEAATE-LARVLTSKGVLPD-VCTFNSLI------ 414

Query: 255 CDGIYETVNS------LKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIG 308
             G+  T N        + M E+GC+P    + +  E   + + L+ A  +   M    G
Sbjct: 415 -QGLCLTSNREIAMELFEEMKEKGCDPDEFTYSILIESLCSERRLKEALMLLKEM-ELSG 472

Query: 309 FRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEAS 368
              +  +YN +I   C +N  G A  + D+M   G      TYN L   L K +++ EA+
Sbjct: 473 CARNVVVYNTLIDGLCKNNRVGDAEDIFDQMEMLGVSRSSVTYNTLINGLCKSKRVEEAA 532

Query: 369 GLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGL 428
            L ++M+      +       ++ +    D   A    + M  N C     T   L+ GL
Sbjct: 533 QLMDQMIMEGLKPDKFTYTTMLKYFCQQGDIKRAADIVQNMTLNGCEPDIVTYGTLIGGL 592

Query: 429 CDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKAR--KEA--VYEELLKK 478
           C    +  A K  + +  KG+ +TP A + + Q L K +  KEA  ++ E+++K
Sbjct: 593 CKAGRVDVASKLLRSVQMKGMVLTPQAYNPVIQALCKRKRTKEAMRLFREMMEK 646



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 84/330 (25%), Positives = 142/330 (43%), Gaps = 19/330 (5%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           TF ++   ++    V+ A+   ++M + GC+    ++N L++ +C++G+  +A +F+   
Sbjct: 236 TFTTLMQGFIEEADVEGALRIKELMVESGCELTSVSVNVLVNGLCKEGRIEEALRFIYEE 295

Query: 197 DGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD 256
           +G   PD  T+  L+ G  +   +    +   + ++E G++ D V  Y+S LI+ L    
Sbjct: 296 EG-FCPDQVTFNALVNGLCRTGHIKQGLEMM-DFMLEKGFELD-VYTYNS-LISGLCKLG 351

Query: 257 GIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMY 316
            I E V  L  M+ R C P    +           ++  A  +   +  + G  PD   +
Sbjct: 352 EIDEAVEILHHMVSRDCEPNTVTYNTLIGTLCKENHVEAATELARVLTSK-GVLPDVCTF 410

Query: 317 NMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK 376
           N +I   C ++    AM+L +EM   G  PD  TY+IL E L   R+L EA  L  EM  
Sbjct: 411 NSLIQGLCLTSNREIAMELFEEMKEKGCDPDEFTYSILIESLCSERRLKEALMLLKEM-- 468

Query: 377 NENVLNHENCRAAVRVYMDSDDPYV-------AIKFWKYMIENHCSDLSETGNLLVAGLC 429
                    C   V VY    D          A   +  M     S  S T N L+ GLC
Sbjct: 469 -----ELSGCARNVVVYNTLIDGLCKNNRVGDAEDIFDQMEMLGVSRSSVTYNTLINGLC 523

Query: 430 DMHMLPEAVKYAKGMAEKGIQVTPFALSKL 459
               + EA +    M  +G++   F  + +
Sbjct: 524 KSKRVEEAAQLMDQMIMEGLKPDKFTYTTM 553



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 96/419 (22%), Positives = 169/419 (40%), Gaps = 49/419 (11%)

Query: 72  QVLKFSYSHP--GPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKK 129
           Q+L      P    A+  F+W++ Q N    P  ++ ++  L +   FD+M   ++ M  
Sbjct: 61  QLLDLLRRQPDSSSALSLFQWASAQPNYSAHPSVFHELLRQLARAGSFDSMLTLLRQMHS 120

Query: 130 ENV--------LSLATFAS------------------------------VFSSYVVADRV 151
             +        + L T+A+                                S  V A+++
Sbjct: 121 SKIPVDESTFLIFLETYATSHHLHAEINPLFLLMERDFAVKPDTRFYNVALSLLVKANKL 180

Query: 152 KDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYAIL 210
           K   T    M       DV   N L+ A+C+  +   A   L  + +  ++PD  T+  L
Sbjct: 181 KLVETLHSKMVADAVPPDVSTFNILIRALCKAHQLRPAILMLEDMPNYGLRPDEKTFTTL 240

Query: 211 LEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMME 270
           ++G+ +E DV  A +   E+++E G +  +V    + L+  L     I E +  +    E
Sbjct: 241 MQGFIEEADVEGALR-IKELMVESGCELTSVSV--NVLVNGLCKEGRIEEALRFIYE--E 295

Query: 271 RG-CNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNET 329
            G C   +TF  L    C TG   +G E +   M+ + GF  D + YN +IS  C   E 
Sbjct: 296 EGFCPDQVTFNALVNGLCRTGHIKQGLE-MMDFMLEK-GFELDVYTYNSLISGLCKLGEI 353

Query: 330 GAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAA 389
             A+++L  MV     P+  TYN L   L K   +  A+ L   +     + +     + 
Sbjct: 354 DEAVEILHHMVSRDCEPNTVTYNTLIGTLCKENHVEAATELARVLTSKGVLPDVCTFNSL 413

Query: 390 VRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448
           ++    + +  +A++ ++ M E  C     T ++L+  LC    L EA+   K M   G
Sbjct: 414 IQGLCLTSNREIAMELFEEMKEKGCDPDEFTYSILIESLCSERRLKEALMLLKEMELSG 472



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 79/350 (22%), Positives = 145/350 (41%), Gaps = 9/350 (2%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVM 161
            +N ++  L K    +A  +  + +  + VL  + TF S+     +    + A+  F+ M
Sbjct: 374 TYNTLIGTLCKENHVEAATELARVLTSKGVLPDVCTFNSLIQGLCLTSNREIAMELFEEM 433

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDT-YAILLEGWEKERDV 220
           ++ GC  D F  + L+ ++C + +  +A   L+ ++      N   Y  L++G  K   V
Sbjct: 434 KEKGCDPDEFTYSILIESLCSERRLKEALMLLKEMELSGCARNVVVYNTLIDGLCKNNRV 493

Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPG-MTF 279
            +A+  F +M + +G    +V  Y++ +  L K    + E    + +M+  G  P   T+
Sbjct: 494 GDAEDIFDQMEM-LGVSRSSV-TYNTLINGLCKS-KRVEEAAQLMDQMIMEGLKPDKFTY 550

Query: 280 FKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEM 339
             +    C  G   R A+ +    +   G  PD   Y  +I   C +     A KLL  +
Sbjct: 551 TTMLKYFCQQGDIKRAADIVQNMTLN--GCEPDIVTYGTLIGGLCKAGRVDVASKLLRSV 608

Query: 340 VYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDP 399
              G     Q YN + + L K ++  EA  LF EM++  +  +    +   R   +   P
Sbjct: 609 QMKGMVLTPQAYNPVIQALCKRKRTKEAMRLFREMMEKGDPPDVITYKIVFRGLCNGGGP 668

Query: 400 YV-AIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448
              A+ F   M+E        +   L  GLC + M    ++    + EKG
Sbjct: 669 IQEAVDFTVEMLEKGILPEFPSFGFLAEGLCSLSMEDTLIQLINMVMEKG 718



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 79/351 (22%), Positives = 139/351 (39%), Gaps = 7/351 (1%)

Query: 102 YAWNLVVDLLGKNCLFDAMWDAIKSM-KKENVLSLATFASVFSSYVVADRVKDAITTFDV 160
           Y +N ++  L K    D   + +  M  ++   +  T+ ++  +    + V+ A     V
Sbjct: 338 YTYNSLISGLCKLGEIDEAVEILHHMVSRDCEPNTVTYNTLIGTLCKENHVEAATELARV 397

Query: 161 MEQYGCKHDVFALNSLLSAIC-RDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERD 219
           +   G   DV   NSL+  +C    + I    F  + +    PD  TY+IL+E    ER 
Sbjct: 398 LTSKGVLPDVCTFNSLIQGLCLTSNREIAMELFEEMKEKGCDPDEFTYSILIESLCSERR 457

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTF 279
           +  A     EM  E+     NV  Y++ +  L K  + + +  +   +M   G +     
Sbjct: 458 LKEALMLLKEM--ELSGCARNVVVYNTLIDGLCKN-NRVGDAEDIFDQMEMLGVSRSSVT 514

Query: 280 FKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEM 339
           +          + +  A  +   M+   G +PD   Y  M+  +C   +   A  ++  M
Sbjct: 515 YNTLINGLCKSKRVEEAAQLMDQMIME-GLKPDKFTYTTMLKYFCQQGDIKRAADIVQNM 573

Query: 340 VYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDP 399
             NG  PDI TY  L   L K  ++  AS L   +     VL  +     ++        
Sbjct: 574 TLNGCEPDIVTYGTLIGGLCKAGRVDVASKLLRSVQMKGMVLTPQAYNPVIQALCKRKRT 633

Query: 400 YVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHM-LPEAVKYAKGMAEKGI 449
             A++ ++ M+E        T  ++  GLC+    + EAV +   M EKGI
Sbjct: 634 KEAMRLFREMMEKGDPPDVITYKIVFRGLCNGGGPIQEAVDFTVEMLEKGI 684


>gi|144923530|gb|ABE80159.2| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 695

 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 87/353 (24%), Positives = 157/353 (44%), Gaps = 12/353 (3%)

Query: 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDV 160
           + +  +++ L KN    A    ++ M+K +V  +L  ++++         V DA+     
Sbjct: 161 FTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQ 220

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERD 219
           + + G   D    NSL+   C  G+  +  Q L ++V   + PD+ T+ IL++   KE  
Sbjct: 221 IGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGR 280

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG-C--DGIYETVNSLKRMMERGCNPG 276
           +  A+     M+ + G  PD V  Y++    L++G C  + ++E      RM++RG  P 
Sbjct: 281 ILEAQGVLA-MMSKRGEKPDIV-TYNA----LMEGYCSRENVHEARELFNRMVKRGLEPD 334

Query: 277 MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLL 336
           +  + +  +     + +  A  ++  +  +    P    YN +I   C S       KLL
Sbjct: 335 VLNYNVLIDGYCKTKMVDEAMVLFKELCNK-NLVPTIASYNSLIDGLCNSGRISHVKKLL 393

Query: 337 DEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDS 396
           DEM  +   PD+ TYNIL + L K  ++ EA G+   M+K     N     A +  Y   
Sbjct: 394 DEMHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLR 453

Query: 397 DDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
           ++  VA   +  M+++         N+L+ G C   M+ EA+   K M  K +
Sbjct: 454 NNVNVAKDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNL 506



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 88/378 (23%), Positives = 155/378 (41%), Gaps = 50/378 (13%)

Query: 102 YAWNLVVDLLGKNC-LFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDV 160
           Y +N+++D L K   + +A        K+     + T+ ++   Y   + V +A   F+ 
Sbjct: 266 YTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNR 325

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAW-QFLRVVDGRIKPDNDTYAILLEGWEKERD 219
           M + G + DV   N L+   C+     +A   F  + +  + P   +Y  L++G      
Sbjct: 326 MVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGR 385

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDG-IYETVNSLKRMMERGCNPGMT 278
           +++ KK   EM       P +V  Y+  +  L K  +G I E +  L  MM++G  P + 
Sbjct: 386 ISHVKKLLDEM--HGSAQPPDVVTYNILIDALCK--EGRILEALGVLVMMMKKGVKPNIV 441

Query: 279 FFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAM----- 333
            +    +      N+  A+ I+  MV + G  PD   YN++I+ YC +     A+     
Sbjct: 442 TYNAMMDGYCLRNNVNVAKDIFNRMV-KSGLEPDILNYNVLINGYCKTEMVDEAIVLFKE 500

Query: 334 ------------------------------KLLDEMVYNGAFPDIQTYNILFEFLVKGRK 363
                                         +LLDEM  +G  PD+ TYNIL +   K + 
Sbjct: 501 MRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDVITYNILLDAFCKTQP 560

Query: 364 LWEASGLFNEMVKN---ENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSET 420
             +A  LF ++V+    +   NH    A V      +   +A    K+++ + CS   +T
Sbjct: 561 FDKAISLFRQIVEGIWPDFYTNH----AIVDNLCKGEKLKMAEDALKHLLMHGCSPNVQT 616

Query: 421 GNLLVAGLCDMHMLPEAV 438
             +L+  LC      EA+
Sbjct: 617 YTILINALCKDGSFGEAM 634



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 90/394 (22%), Positives = 157/394 (39%), Gaps = 32/394 (8%)

Query: 81  PGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGK-------------NCLFDAMWDAIKSM 127
           P P   F +     +   H P A +L   L  K             NC F     A    
Sbjct: 52  PPPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSIATFTILINCYFHQSHTAFAFS 111

Query: 128 KKENVL------SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAIC 181
               +L      +L TF ++ + + +   +  A+     +   G   D F   +L++ + 
Sbjct: 112 LLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQNLLAQGYLFDQFTYGTLINGLS 171

Query: 182 RDGKTIDAWQFLRVVD-GRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDN 240
           ++G+   A   L+ ++   ++P+   Y+ L++G  K+  V++A     + + E G   D 
Sbjct: 172 KNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQ-IGERGILLDA 230

Query: 241 VPAYDSYLITLLKGCDGI---YETVNSLKRMMERGCNPG-MTFFKLAFEECLTGQNLRGA 296
           V  Y+S    L+ GC  +    E    L +M+    +P   TF  L    C  G+ L   
Sbjct: 231 V-TYNS----LIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEAQ 285

Query: 297 EFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFE 356
             +  AM+ + G +PD   YN ++  YC       A +L + MV  G  PD+  YN+L +
Sbjct: 286 GVL--AMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLID 343

Query: 357 FLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSD 416
              K + + EA  LF E+     V    +  + +    +S       K    M  +    
Sbjct: 344 GYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPP 403

Query: 417 LSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQ 450
              T N+L+  LC    + EA+     M +KG++
Sbjct: 404 DVVTYNILIDALCKEGRILEALGVLVMMMKKGVK 437



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 67/311 (21%), Positives = 128/311 (41%), Gaps = 40/311 (12%)

Query: 104 WNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVME 162
           +N+++D   K  + D      K +  +N++ ++A++ S+      + R+       D M 
Sbjct: 338 YNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMH 397

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVA 221
                 DV   N L+ A+C++G+ ++A   L ++  + +KP+  TY  +++G+    +V 
Sbjct: 398 GSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVN 457

Query: 222 NAKKTFGEMVIEVGWDPD----------------------------------NVPAYDSY 247
            AK  F  MV + G +PD                                  ++ +Y+S 
Sbjct: 458 VAKDIFNRMV-KSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNS- 515

Query: 248 LITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRI 307
           LI  L     I      L  M + G +P +  + +  +     Q    A  ++  +V   
Sbjct: 516 LIDGLCNLGRIPHVQELLDEMCDSGQSPDVITYNILLDAFCKTQPFDKAISLFRQIVE-- 573

Query: 308 GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEA 367
           G  PD +  + ++   C   +   A   L  ++ +G  P++QTY IL   L K     EA
Sbjct: 574 GIWPDFYTNHAIVDNLCKGEKLKMAEDALKHLLMHGCSPNVQTYTILINALCKDGSFGEA 633

Query: 368 SGLFNEMVKNE 378
             L ++M  N+
Sbjct: 634 MLLLSKMEDND 644



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 64/275 (23%), Positives = 120/275 (43%), Gaps = 7/275 (2%)

Query: 103 AWNLVVDLLGKNC-LFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVM 161
            +N+++D L K   + +A+   +  MKK    ++ T+ ++   Y + + V  A   F+ M
Sbjct: 407 TYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRM 466

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDV 220
            + G + D+   N L++  C+     +A    + +  + + PD  +Y  L++G      +
Sbjct: 467 VKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRI 526

Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFF 280
            + ++   EM  + G  PD V  Y+  L    K     ++   SL R +  G  P     
Sbjct: 527 PHVQELLDEMC-DSGQSPD-VITYNILLDAFCK--TQPFDKAISLFRQIVEGIWPDFYTN 582

Query: 281 KLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMV 340
               +    G+ L+ AE     ++   G  P+   Y ++I+  C     G AM LL +M 
Sbjct: 583 HAIVDNLCKGEKLKMAEDALKHLLMH-GCSPNVQTYTILINALCKDGSFGEAMLLLSKME 641

Query: 341 YNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
            N   PD  T+ I+   L++  +  +A  L  EM+
Sbjct: 642 DNDRPPDAITFEIIIGVLLQRNETDKAEKLREEMI 676



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 74/345 (21%), Positives = 129/345 (37%), Gaps = 42/345 (12%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           S+ATF  + + Y        A +    + + G + ++   N++++  C +G    A  F 
Sbjct: 89  SIATFTILINCYFHQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFC 148

Query: 194 R--VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITL 251
           +  +  G +  D  TY  L+ G  K   +  A     EM  E      N+  Y + +   
Sbjct: 149 QNLLAQGYLF-DQFTYGTLINGLSKNGQIKAALHLLQEM--EKSSVQPNLVMYSALI--- 202

Query: 252 LKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRP 311
               DG+              C  G  F   A   C              + +G  G   
Sbjct: 203 ----DGL--------------CKDG--FVSDALGLC--------------SQIGERGILL 228

Query: 312 DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLF 371
           D   YN +I   C         +LL +MV     PD  T+NIL + L K  ++ EA G+ 
Sbjct: 229 DAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVL 288

Query: 372 NEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDM 431
             M K     +     A +  Y   ++ + A + +  M++          N+L+ G C  
Sbjct: 289 AMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKT 348

Query: 432 HMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELL 476
            M+ EA+   K +  K +  T  + + L   L  + + +  ++LL
Sbjct: 349 KMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLL 393



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 52/212 (24%), Positives = 91/212 (42%), Gaps = 10/212 (4%)

Query: 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL- 193
           +  +  + + Y   + V +AI  F  M       D+ + NSL+  +C  G+     + L 
Sbjct: 475 ILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLD 534

Query: 194 RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLIT--L 251
            + D    PD  TY ILL+ + K +    A   F + ++E  W PD    Y ++ I   L
Sbjct: 535 EMCDSGQSPDVITYNILLDAFCKTQPFDKAISLFRQ-IVEGIW-PD---FYTNHAIVDNL 589

Query: 252 LKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRP 311
            KG + +    ++LK ++  GC+P +  + +         +   A  +   M       P
Sbjct: 590 CKG-EKLKMAEDALKHLLMHGCSPNVQTYTILINALCKDGSFGEAMLLLSKMEDN-DRPP 647

Query: 312 DTHMYNMMISLYCYSNETGAAMKLLDEMVYNG 343
           D   + ++I +    NET  A KL +EM+  G
Sbjct: 648 DAITFEIIIGVLLQRNETDKAEKLREEMIARG 679


>gi|356557957|ref|XP_003547276.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At5g43820-like [Glycine max]
          Length = 505

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 96/386 (24%), Positives = 156/386 (40%), Gaps = 26/386 (6%)

Query: 104 WNLVVDLLGKNCLFDAMWDAIKSMKKENVLS-LATFASVFSSYVVADRVKDAITTFDVME 162
           ++++V  LG+   FD M DA+  M++  +   L   + V  S+V A  V  AI  F  ++
Sbjct: 113 YHVIVKALGRRKFFDFMMDALCDMRRNAIDGDLFMLSVVVDSFVRAGHVSRAIQVFGNLD 172

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVAN 222
             G + D  ALN LL  +CR      A   L  + G++  D  TY  +  GW +   V+ 
Sbjct: 173 DLGVRRDTEALNVLLLCLCRRSHVGAANSVLNSMKGKVDFDVGTYNAVAGGWSRFGRVSE 232

Query: 223 AKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKL 282
            ++   EM  + G  PD       +LI  L     + E V  L  M E  C P    +  
Sbjct: 233 VERVMREMEAD-GLRPDCRTF--GFLIEGLGREGRMDEAVEILCGMKEMNCQPDTETYNA 289

Query: 283 A---------FEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAM 333
                     FEEC+   N   ++             P+   Y  MI+ +  + +   A+
Sbjct: 290 VIFNFVSVGDFEECIKYYNRMLSD----------NCEPNLDTYARMINRFLRARKVADAL 339

Query: 334 KLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVY 393
            + DEM+  G  P   T     + L      + A  ++ +  K   V++ E  +  +   
Sbjct: 340 LMFDEMLRRGVVPSTGTITTFIKRLCSYGPPYAALMIYKKARKLGCVISMEAYKILLMRL 399

Query: 394 MDSDDPYVAIKFWKYMIE-NHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVT 452
                    +  W+ M E  + SDL E    +++GLC++  L  AV   +    KG   +
Sbjct: 400 SMVGKCGTLLSIWEEMQECGYSSDL-EVYECIISGLCNVGQLENAVLVMEEALRKGFCPS 458

Query: 453 PFALSKLKQILIKARK-EAVYEELLK 477
               SKL   L+ + K E  Y+  LK
Sbjct: 459 RLVYSKLSNRLLASDKSERAYKLFLK 484


>gi|413923666|gb|AFW63598.1| hypothetical protein ZEAMMB73_713200 [Zea mays]
          Length = 120

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/117 (44%), Positives = 75/117 (64%), Gaps = 1/117 (0%)

Query: 366 EASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLV 425
           EA+ +F++MVKNE   N  NC  A+++++D+      I  W  M+EN    L E GN+LV
Sbjct: 5   EAAPIFSKMVKNECWPNEGNCSLALQMFLDTHYWETGINVWSCMVENGLPPLEECGNMLV 64

Query: 426 AGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKCKAH 482
           + L D   LPEA KYA+ M ++GI+++   LSKLKQ L K +K  +++ LLKK KAH
Sbjct: 65  SKLKD-DRLPEACKYAEDMIDRGIKLSSSTLSKLKQCLHKIKKGEIHDHLLKKWKAH 120


>gi|125582553|gb|EAZ23484.1| hypothetical protein OsJ_07180 [Oryza sativa Japonica Group]
          Length = 457

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 90/373 (24%), Positives = 158/373 (42%), Gaps = 41/373 (10%)

Query: 102 YAWN-LVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDV 160
           Y +N L+  L G+    +A+    + +++  V  + T+  +  +       K A+   D 
Sbjct: 33  YTYNTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDE 92

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDG-RIKPDNDTYAILLEGWEKERD 219
           M   GC  D+   N +++ IC++G+  DA +FL+ +     +P+  +Y I+L+G      
Sbjct: 93  MRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAER 152

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTF 279
             +A++  GEM  + G  P NV  ++  LI+ L     +   +  L+++ + GC P    
Sbjct: 153 WEDAEELMGEMG-QKGCPP-NVVTFN-MLISFLCRKGLVEPALEVLEQIPKYGCTPNSLS 209

Query: 280 FKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEM 339
           +          + +  A      MV R G  PD   YN +++  C S E   A++LL ++
Sbjct: 210 YNPLLHAFCKQKKMDKAMAFLDLMVSR-GCYPDIVSYNTLLTALCRSGEVDVAVELLHQL 268

Query: 340 VYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK---NENVLNHEN-----CRA--- 388
              G  P + +YN + + L K  K  EA  L NEMV      +++ +       CR    
Sbjct: 269 KDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRI 328

Query: 389 --AVRVYMDSDD----------------------PYVAIKFWKYMIENHCSDLSETGNLL 424
             A+R +    D                       + AI  + YMI N C     T  +L
Sbjct: 329 EDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTIL 388

Query: 425 VAGLCDMHMLPEA 437
           + GL    ++ EA
Sbjct: 389 IEGLAYEGLIKEA 401



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 71/285 (24%), Positives = 124/285 (43%), Gaps = 9/285 (3%)

Query: 169 DVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTF 227
           D +  N+L+  +C  G+T +A   L  ++  R  PD  TY ILLE   K      A K  
Sbjct: 31  DAYTYNTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLL 90

Query: 228 GEMVIEVGWDPDNVPAYDSYLITLLKGCDG--IYETVNSLKRMMERGCNPGMTFFKLAFE 285
            EM  + G  PD V    +Y + +   C    + + +  LK +   GC P    + +  +
Sbjct: 91  DEMR-DKGCTPDIV----TYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLK 145

Query: 286 ECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAF 345
              T +    AE + G M G+ G  P+   +NM+IS  C       A+++L+++   G  
Sbjct: 146 GLCTAERWEDAEELMGEM-GQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCT 204

Query: 346 PDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKF 405
           P+  +YN L     K +K+ +A    + MV      +  +    +     S +  VA++ 
Sbjct: 205 PNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVEL 264

Query: 406 WKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQ 450
              + +  C+ +  + N ++ GL       EA++    M  KG+Q
Sbjct: 265 LHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQ 309



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 76/307 (24%), Positives = 129/307 (42%), Gaps = 39/307 (12%)

Query: 104 WNLVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASVFSSYVVADRVKDAITTFDVME 162
           +N+VV+ + +    D   + +K++       +  ++  V      A+R +DA      M 
Sbjct: 105 YNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMG 164

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERDVA 221
           Q GC  +V   N L+S +CR G    A + L ++      P++ +Y  LL  + K++ + 
Sbjct: 165 QKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMD 224

Query: 222 NAKKTFGEMVIEVGWDPDNVPAYDSYLITLL-----------------KGC--------- 255
            A   F ++++  G  PD V +Y++ L  L                  KGC         
Sbjct: 225 KAM-AFLDLMVSRGCYPDIV-SYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNT 282

Query: 256 --DGIY------ETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRI 307
             DG+       E +  L  M+ +G  P +  +            +  A   +G  V  +
Sbjct: 283 VIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGK-VQDM 341

Query: 308 GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEA 367
           G RP+T +YN +I   C   ET +A+ L   M+ NG  P+  TY IL E L     + EA
Sbjct: 342 GIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGLAYEGLIKEA 401

Query: 368 SGLFNEM 374
             L +E+
Sbjct: 402 RDLLDEL 408



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 69/154 (44%), Gaps = 16/154 (10%)

Query: 303 MVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGR 362
           +V  +   PD + YN +I   C    T  A+ +LDEM+     PD+ TY IL E   K  
Sbjct: 22  LVAEMPVEPDAYTYNTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKRS 81

Query: 363 KLWEASGLFNEM--------VKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHC 414
              +A  L +EM        +   NV+ +  C+   RV    DD   AI+F K +    C
Sbjct: 82  GYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEG-RV----DD---AIEFLKNLPSYGC 133

Query: 415 SDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448
              + + N+++ GLC      +A +    M +KG
Sbjct: 134 EPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKG 167



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 34/150 (22%), Positives = 68/150 (45%), Gaps = 5/150 (3%)

Query: 93  YQLNDKHSP---YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVA 148
           +QL DK       ++N V+D L K        + +  M  + +   + T++++ +     
Sbjct: 266 HQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCRE 325

Query: 149 DRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTY 207
           DR++DAI  F  ++  G + +    N+++  +C+  +T  A   F  ++     P+  TY
Sbjct: 326 DRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTY 385

Query: 208 AILLEGWEKERDVANAKKTFGEMVIEVGWD 237
            IL+EG   E  +  A+    E+    G +
Sbjct: 386 TILIEGLAYEGLIKEARDLLDELCSRAGEE 415



 Score = 47.0 bits (110), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 70/161 (43%), Gaps = 3/161 (1%)

Query: 316 YNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
           YN M++ YC + +  AA +L+ EM      PD  TYN L   L    +   A  + +EM+
Sbjct: 3   YNAMVAGYCGAGQLDAARRLVAEMPVE---PDAYTYNTLIRGLCGRGRTANALAVLDEML 59

Query: 376 KNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLP 435
           +   V +       +           A+K    M +  C+    T N++V G+C    + 
Sbjct: 60  RRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVD 119

Query: 436 EAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELL 476
           +A+++ K +   G +    + + + + L  A +    EEL+
Sbjct: 120 DAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELM 160


>gi|224127136|ref|XP_002329409.1| predicted protein [Populus trichocarpa]
 gi|222870459|gb|EEF07590.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 117/459 (25%), Positives = 185/459 (40%), Gaps = 47/459 (10%)

Query: 59  DKTLIRVSQETVEQVLKFS--YSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKN-- 114
           +K LI++S   V  VLK       P  A+KFF W+  Q    H+   +   +D+L  N  
Sbjct: 53  NKFLIKLSPNFVSFVLKSMELQKRPDLALKFFTWAGKQKKYTHNLQCYVSSIDVLAINGD 112

Query: 115 --------CLFDAMW---------DAIKSMK---------------KENVL--SLATFAS 140
                   C F  M            IKS                 KEN +  SL T+  
Sbjct: 113 LDNVKSVFCKFRGMGFLMNVSAANSLIKSFGSLGMVEELLWVWRGMKENGVEPSLFTYNF 172

Query: 141 VFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR- 199
           + +  V +  ++ A    +VME      DV   N+++   C+ GKT  A++  R ++ R 
Sbjct: 173 LLNGLVNSVFIESAERVLEVMENGKIGPDVVTYNTMIKGYCQVGKTQKAFEKFRDMELRN 232

Query: 200 IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVP--AYDSYLITLLKGCDG 257
           + PD  TY  L++    E D       + EM  E G +   +P  AY   +  L K    
Sbjct: 233 VAPDKITYMTLIQACYAEGDFDLCLSLYHEM-DENGLE---IPPHAYSLVIGGLCKEGKC 288

Query: 258 IYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYN 317
           + E     ++M+++GC   +  +    +      N+  A  ++  M  + G  PD   Y 
Sbjct: 289 V-EGYAVFEKMIQKGCKVNVAIYTALIDSNAKCGNMGEAMLLFERM-KKEGLEPDVVTYG 346

Query: 318 MMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKN 377
           ++++  C S     AM+ L+    NG   +   Y+ L + L K  ++ EA  LF EMVK 
Sbjct: 347 VVVNCMCKSGRLDEAMEYLEFCRVNGVAVNAMLYSSLIDGLGKAGRVHEAEKLFEEMVKK 406

Query: 378 ENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEA 437
               +     A +           A+ F+K M +  C     T  +++ GL   H   EA
Sbjct: 407 GCPPDSYCYNALIDALAKCGKTDEALAFFKRMEDEGCDQTVYTYTIMINGLFREHKNEEA 466

Query: 438 VKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELL 476
           +K    M +KGI  T  A   L   L  + K A   +LL
Sbjct: 467 LKMWDMMIDKGITPTAAAFRALSIGLCLSGKVARACKLL 505



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 70/280 (25%), Positives = 131/280 (46%), Gaps = 13/280 (4%)

Query: 101 PYAWNLVVDLL---GKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITT 157
           P+A++LV+  L   GK     A+++  K ++K   +++A + ++  S      + +A+  
Sbjct: 272 PHAYSLVIGGLCKEGKCVEGYAVFE--KMIQKGCKVNVAIYTALIDSNAKCGNMGEAMLL 329

Query: 158 FDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRV--VDGRIKPDNDTYAILLEGWE 215
           F+ M++ G + DV     +++ +C+ G+  +A ++L    V+G +  +   Y+ L++G  
Sbjct: 330 FERMKKEGLEPDVVTYGVVVNCMCKSGRLDEAMEYLEFCRVNG-VAVNAMLYSSLIDGLG 388

Query: 216 KERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNP 275
           K   V  A+K F EMV + G  PD+   Y++ LI  L  C    E +   KRM + GC+ 
Sbjct: 389 KAGRVHEAEKLFEEMV-KKGCPPDSY-CYNA-LIDALAKCGKTDEALAFFKRMEDEGCDQ 445

Query: 276 GMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKL 335
            +  + +             A  +W  M+ + G  P    +  +    C S +   A KL
Sbjct: 446 TVYTYTIMINGLFREHKNEEALKMWDMMIDK-GITPTAAAFRALSIGLCLSGKVARACKL 504

Query: 336 LDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
           LDE+   G  P+   +  +   L K  ++ EA  L +  V
Sbjct: 505 LDELAPMGVIPE-TAFEDMLNVLCKAGRIKEACKLADGFV 543


>gi|152717462|dbj|BAF73723.1| pentatricopeptide repeat protein [Raphanus sativus]
          Length = 687

 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 77/316 (24%), Positives = 130/316 (41%), Gaps = 39/316 (12%)

Query: 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL- 193
           + TF ++     V DRV +A+  F  M +  C+ +V    +L++ +CR+G+ ++A   L 
Sbjct: 149 VVTFNTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLD 208

Query: 194 RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLK 253
           R+++  ++P   TY  +++G  K  D  +A     +M  E+     NV  Y + + +L K
Sbjct: 209 RMMEDGLQPTQITYGTIVDGMCKIGDTVSALDLLRKME-EISHIIPNVVIYSAIIDSLCK 267

Query: 254 GCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDT 313
             DG +    +L   M+                                     G  PD 
Sbjct: 268 --DGRHSDAQNLFTEMQEK-----------------------------------GIFPDL 290

Query: 314 HMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNE 373
             YN MI  +C S     A +LL EM+     PD+ TYN L    VK  K +EA  L++E
Sbjct: 291 FTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDE 350

Query: 374 MVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHM 433
           M+    + N     + +  +   +    A   +  M    CS    T N L+ G C    
Sbjct: 351 MLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKR 410

Query: 434 LPEAVKYAKGMAEKGI 449
           + + ++    M E G+
Sbjct: 411 IDDGMELLHEMTETGL 426



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 82/318 (25%), Positives = 142/318 (44%), Gaps = 31/318 (9%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           ++  ++++  S     R  DA   F  M++ G   D+F  NS++   C  G+  DA Q L
Sbjct: 254 NVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLL 313

Query: 194 R-VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
           + +++ +I PD  TY  L+  + KE     A++ + EM+   G  P+ +  Y S +    
Sbjct: 314 QEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPR-GIIPNTI-TYSSMIDGFC 371

Query: 253 KGCDGIYETVNSLKRMMERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRP 311
           K  + +    +    M  +GC+P + TF  L    C   +   G E +    +   G   
Sbjct: 372 KQ-NRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHE--MTETGLVA 428

Query: 312 DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLF 371
           DT  YN +I  +    +  AA+ LL EM+ +G  PDI T + L + L    KL +A  +F
Sbjct: 429 DTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMF 488

Query: 372 NEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDM 431
             M K++  L             D+  P+  ++           D+ +T N+L++GL + 
Sbjct: 489 KVMQKSKKDL-------------DASHPFNGVE----------PDV-QTYNILISGLINE 524

Query: 432 HMLPEAVKYAKGMAEKGI 449
               EA +  + M  +GI
Sbjct: 525 GKFLEAEELYEEMPHRGI 542



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 62/261 (23%), Positives = 104/261 (39%), Gaps = 22/261 (8%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RV 195
           T++S+   +   +R+  A   F +M   GC  ++   N+L+   C   +  D  + L  +
Sbjct: 362 TYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEM 421

Query: 196 VDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG- 254
            +  +  D  TY  L+ G+    D+  A     EM I  G  PD V        TLL G 
Sbjct: 422 TETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEM-ISSGLCPDIVTCD-----TLLDGL 475

Query: 255 CD-GIYETVNSLKRMMER------------GCNPGMTFFKLAFEECLTGQNLRGAEFIWG 301
           CD G  +    + ++M++            G  P +  + +     +       AE ++ 
Sbjct: 476 CDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYE 535

Query: 302 AMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKG 361
            M  R G  PDT  Y+ MI   C  +    A ++ D M      P++ T+  L     K 
Sbjct: 536 EMPHR-GIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKA 594

Query: 362 RKLWEASGLFNEMVKNENVLN 382
            ++ +   LF EM +   V N
Sbjct: 595 GRVDDGLELFCEMGRRGIVAN 615



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 57/256 (22%), Positives = 99/256 (38%), Gaps = 18/256 (7%)

Query: 132 VLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ 191
           V    T+ ++   + +   +  A+     M   G   D+   ++LL  +C +GK  DA +
Sbjct: 427 VADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALE 486

Query: 192 FLRVVD------------GRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPD 239
             +V+               ++PD  TY IL+ G   E     A++ + EM    G  PD
Sbjct: 487 MFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMP-HRGIVPD 545

Query: 240 NVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGM-TFFKLAFEECLTGQNLRGAEF 298
            +  Y S +  L K    + E       M  +  +P + TF  L    C  G+   G E 
Sbjct: 546 TI-TYSSMIDGLCKQ-SRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLEL 603

Query: 299 IWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFL 358
                +GR G   +   Y  +I  +        A+ +  EM+ +G +PD  T   +   L
Sbjct: 604 F--CEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGL 661

Query: 359 VKGRKLWEASGLFNEM 374
               +L  A  +  ++
Sbjct: 662 WSKEELKRAVAMLEKL 677


>gi|302784458|ref|XP_002974001.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
 gi|300158333|gb|EFJ24956.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
          Length = 561

 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 130/299 (43%), Gaps = 14/299 (4%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           T+ S+      A ++  A    D M   G    V   N ++  +C+ G+  DA  + + V
Sbjct: 32  TYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVIKGLCKAGRFGDALGYFKTV 91

Query: 197 DG-RIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
            G +  PD  T+ IL++   K   V  A + F  M       P NV  Y + +  L K  
Sbjct: 92  AGTKCTPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLP-NVVTYTTVINGLCK-- 148

Query: 256 DG-IYETVNSLKRMMERGCNPGMTFFKLAFEE-CLTGQNLRGAEFIWGAMVGRIGFRPDT 313
           DG +   +  L  M E GC P +  + +  E  C  G+  +G  F     + R GF+PD 
Sbjct: 149 DGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKG--FTLLQEMTRRGFQPDV 206

Query: 314 HMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNE 373
            MYN +++  C S     A++L+  M+ +G +P + TYN L E   + +++  A  L   
Sbjct: 207 IMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQV 266

Query: 374 MVKN---ENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLC 429
           M +     +V+N+    A +      DD   A    K M+   C     T + ++ GLC
Sbjct: 267 MSERGCPPDVINYNTVIAGLCRDARLDD---AQALLKQMVAARCVPDVITYSTIIDGLC 322



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 97/411 (23%), Positives = 166/411 (40%), Gaps = 52/411 (12%)

Query: 82  GPAVKFFRWSAYQLNDKHSP--YAWNLVVDLLGKNCLFDAMWDAIKSM--KKENVLSLAT 137
           G A+ +F+  A     K +P    +N++VD L K+   +  +   +SM    + + ++ T
Sbjct: 82  GDALGYFKTVA---GTKCTPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVT 138

Query: 138 FASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVD 197
           + +V +      ++  AI   D+M + GC  +V   + L+  +C+ G+T   +  L+ + 
Sbjct: 139 YTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMT 198

Query: 198 GR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD 256
            R  +PD   Y  LL G  K R +  A +   +++I  G  P  V  Y+S L+ L     
Sbjct: 199 RRGFQPDVIMYNTLLNGLCKSRRLDEALELV-QLMIRSGCYP-TVVTYNS-LMELFCRSK 255

Query: 257 GIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMY 316
            +      ++ M ERGC P +  +            L  A+ +   MV      PD   Y
Sbjct: 256 QVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCV-PDVITY 314

Query: 317 NMMISLYCYSNETG------AAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGL 370
           + +I   C            AA ++L+ M   G  P+  TY ++ E L + RK  +A  L
Sbjct: 315 STIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALAL 374

Query: 371 FNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCS-----------DLSE 419
              M+ +E V +  +    +     S D   A K +  M E  C             LS+
Sbjct: 375 LRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSK 434

Query: 420 TG-----------------------NLLVAGLCDMHMLPEAVKYAKGMAEK 447
            G                       N ++ GLC +  + EAV+  +GM  K
Sbjct: 435 GGEVDKAVRVFELMVESFRPGVATYNSVLDGLCGVGRIEEAVRMVEGMIHK 485



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 74/332 (22%), Positives = 133/332 (40%), Gaps = 50/332 (15%)

Query: 104 WNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVME 162
           +N +++ L K+   D   + ++ M +     ++ T+ S+   +  + +V  A     VM 
Sbjct: 209 YNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMS 268

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYAILLEG----WEKE 217
           + GC  DV   N++++ +CRD +  DA   L+ +V  R  PD  TY+ +++G    W  +
Sbjct: 269 ERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVD 328

Query: 218 RD-VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPG 276
            D    A     EM+ + G  P N   Y   +  L +      + +  L+RM++    P 
Sbjct: 329 ADWKLEAACEILEMMKQTGC-PPNAGTYAVVIEGLCRA-RKSQQALALLRRMIDSEVVPD 386

Query: 277 MTFFKLAFEECLTGQNLRGAEFIWGAMVGR------------------------------ 306
           ++ F +         +L  A  I+G M  R                              
Sbjct: 387 LSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFE 446

Query: 307 ---IGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRK 363
                FRP    YN ++   C       A+++++ M++   FPD  +Y  L   L +   
Sbjct: 447 LMVESFRPGVATYNSVLDGLCGVGRIEEAVRMVEGMIHKECFPDGASYGALIRGLCRVSC 506

Query: 364 LWEASGLFNEM--------VKNENVLNHENCR 387
           + EA  LF  +        V   NVL +E C+
Sbjct: 507 VEEAYELFQAVEAKGFAMEVGVYNVLVNELCK 538



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 65/162 (40%), Gaps = 1/162 (0%)

Query: 308 GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEA 367
           G  P   ++N +I   C +   G A+     +      PDI T+NIL + LVK  ++ EA
Sbjct: 60  GIPPGVAVHNGVIKGLCKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGRVEEA 119

Query: 368 SGLFNEMVKNENVLNHENCRAAVRVYMDSDDPY-VAIKFWKYMIENHCSDLSETGNLLVA 426
             +F  M  +   L +      V   +  D     AI+    M E  C     T ++LV 
Sbjct: 120 FQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVE 179

Query: 427 GLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARK 468
           GLC      +     + M  +G Q      + L   L K+R+
Sbjct: 180 GLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRR 221


>gi|224100421|ref|XP_002311869.1| predicted protein [Populus trichocarpa]
 gi|222851689|gb|EEE89236.1| predicted protein [Populus trichocarpa]
          Length = 470

 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 92/362 (25%), Positives = 158/362 (43%), Gaps = 16/362 (4%)

Query: 98  KHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAIT 156
           K + Y +N ++ LL K+   D     ++ M  + ++     + ++   +     ++ A  
Sbjct: 42  KPNLYTYNSIILLLCKSGKVDDAERVLREMINQGIVPDTVVYTTLIDGFCKLGNIQAAYK 101

Query: 157 TFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWE 215
            FD ME+     D  A  +++  +CR GK ++A + F ++    ++PD  TY  L++G+ 
Sbjct: 102 LFDEMEKQRIVPDFIAYTAVICGLCRCGKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYC 161

Query: 216 KERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNP 275
           K  ++  A     +MV + G  P NV  Y +    L K   G  +T N L   M   C  
Sbjct: 162 KSGEMEKAFSLHNQMV-QSGLTP-NVVTYTALADGLCK--LGQVDTANELLHEM---CGK 214

Query: 276 GM-----TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETG 330
           G+     T+  L    C +G N+R A  +   M    G  PDT  +  ++  YC + E  
Sbjct: 215 GLQLNICTYNSLVNGLCKSG-NIRQAVKLMEEM-EVAGMYPDTITFTTLMDAYCKTGEMV 272

Query: 331 AAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAV 390
            A +LL EM+  G  P + T+N+L         L +   L   M++   + N     + +
Sbjct: 273 KAHELLREMLDRGLQPTVITFNVLMNGFCMSGMLEDGERLLAWMLEKGIMPNTTTYNSLM 332

Query: 391 RVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQ 450
           + Y   ++     + +K M        S T N+L+ G C    + EA    K MAEKG  
Sbjct: 333 KQYCIRNNMRCTTEIYKGMCARGVMPDSNTYNILIKGHCKARNMKEAWFLHKEMAEKGFN 392

Query: 451 VT 452
           +T
Sbjct: 393 LT 394



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 80/317 (25%), Positives = 140/317 (44%), Gaps = 7/317 (2%)

Query: 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR 194
           + ++++V + Y +   ++  +     M+  G K +++  NS++  +C+ GK  DA + LR
Sbjct: 10  VVSYSTVINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGKVDDAERVLR 69

Query: 195 -VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLK 253
            +++  I PD   Y  L++G+ K  ++  A K F EM  +    PD + AY + +  L +
Sbjct: 70  EMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQR-IVPDFI-AYTAVICGLCR 127

Query: 254 GCDGIYETVNSLKRMMERGCNPG-MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD 312
            C  + E      +M  RG  P  +T+  L    C +G+ +  A  +   MV + G  P+
Sbjct: 128 -CGKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGE-MEKAFSLHNQMV-QSGLTPN 184

Query: 313 THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFN 372
              Y  +    C   +   A +LL EM   G   +I TYN L   L K   + +A  L  
Sbjct: 185 VVTYTALADGLCKLGQVDTANELLHEMCGKGLQLNICTYNSLVNGLCKSGNIRQAVKLME 244

Query: 373 EMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMH 432
           EM       +       +  Y  + +   A +  + M++        T N+L+ G C   
Sbjct: 245 EMEVAGMYPDTITFTTLMDAYCKTGEMVKAHELLREMLDRGLQPTVITFNVLMNGFCMSG 304

Query: 433 MLPEAVKYAKGMAEKGI 449
           ML +  +    M EKGI
Sbjct: 305 MLEDGERLLAWMLEKGI 321



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 77/387 (19%), Positives = 144/387 (37%), Gaps = 45/387 (11%)

Query: 32  VPNLPPTIKTLCEIIANTPSPTVEDVLDKTLIRVSQ--ETVEQVLKFSYSHPGPAVKFFR 89
           VP+       +C +         + V +K   R  +  E     L   Y   G   K F 
Sbjct: 112 VPDFIAYTAVICGLCRCGKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFS 171

Query: 90  WSAYQLNDKHSP--YAWNLVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASVFSSYV 146
                +    +P    +  + D L K    D   + +  M  + + L++ T+ S+ +   
Sbjct: 172 LHNQMVQSGLTPNVVTYTALADGLCKLGQVDTANELLHEMCGKGLQLNICTYNSLVNGLC 231

Query: 147 VADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGRIKPDND 205
            +  ++ A+   + ME  G   D     +L+ A C+ G+ + A + LR ++D  ++P   
Sbjct: 232 KSGNIRQAVKLMEEMEVAGMYPDTITFTTLMDAYCKTGEMVKAHELLREMLDRGLQPTVI 291

Query: 206 TYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSL 265
           T+ +L+ G+     + + ++        + W                             
Sbjct: 292 TFNVLMNGFCMSGMLEDGERL-------LAW----------------------------- 315

Query: 266 KRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCY 325
             M+E+G  P  T +    ++     N+R    I+  M  R G  PD++ YN++I  +C 
Sbjct: 316 --MLEKGIMPNTTTYNSLMKQYCIRNNMRCTTEIYKGMCAR-GVMPDSNTYNILIKGHCK 372

Query: 326 SNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHEN 385
           +     A  L  EM   G      +YN + +   K +K+ EA  LF EM +     + E 
Sbjct: 373 ARNMKEAWFLHKEMAEKGFNLTASSYNSIIKGFFKKKKISEARELFEEMRREGMAADAEI 432

Query: 386 CRAAVRVYMDSDDPYVAIKFWKYMIEN 412
               V +     +   A++     IEN
Sbjct: 433 YNLFVDISYGEGNMETALELCDEAIEN 459



 Score = 45.4 bits (106), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 36/156 (23%), Positives = 62/156 (39%), Gaps = 26/156 (16%)

Query: 308 GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEA 367
           G  PD   Y+ +I+ YC   E    +KL+ EM   G  P++ TYN +   L K  K+ +A
Sbjct: 5   GDAPDVVSYSTVINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGKVDDA 64

Query: 368 SGLFNEMVKN-------------ENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHC 414
             +  EM+               +      N +AA +++ + +   +   F  Y      
Sbjct: 65  ERVLREMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAY------ 118

Query: 415 SDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQ 450
                    ++ GLC    + EA K    M  +G++
Sbjct: 119 -------TAVICGLCRCGKMMEADKVFNKMFSRGVE 147


>gi|302793330|ref|XP_002978430.1| hypothetical protein SELMODRAFT_108734 [Selaginella moellendorffii]
 gi|300153779|gb|EFJ20416.1| hypothetical protein SELMODRAFT_108734 [Selaginella moellendorffii]
          Length = 475

 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 98/403 (24%), Positives = 171/403 (42%), Gaps = 49/403 (12%)

Query: 107 VVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVMEQYG 165
           V+  L K    D+    +++M K      +AT + + +    AD++++A      M +  
Sbjct: 55  VIQELCKAGRVDSALSLLETMIKRGYCPDMATHSMLINELCKADKIQEAQEFLQGMNRTI 114

Query: 166 CKH--DVFALNSLLSAICRDGKTIDAWQFLR--VVDGRIKPDNDTYAILLEGWEKERDVA 221
                  F+ NSLL+++C+  K   A+      V +  + PD  +Y+IL++G+ K  ++ 
Sbjct: 115 STRASSCFSYNSLLNSLCKAKKVHQAFAIFSTMVSERSVVPDVVSYSILIDGFCKIDELG 174

Query: 222 NAKKTFGEMVIEVGWDPDNVPAYDSYLITLLK-----GCDGIYETVNS------------ 264
            A+K + +M I++   P NV  Y+++L  L++        G+YE + S            
Sbjct: 175 RAEKLYKQM-IDLNCVP-NVTTYNAFLNGLMRKGRIADAQGVYEEMISAGCSPDVITYST 232

Query: 265 -----------------LKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRI 307
                             + M+ RGC P    +               A  ++  MV R 
Sbjct: 233 LIHGFSLARKHDQAHELFEAMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVER- 291

Query: 308 GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEA 367
           G  PD   Y  ++  +C   +   A+++ DEMV  G  PD+  YN L +   +  K  EA
Sbjct: 292 GCDPDKVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEA 351

Query: 368 SGLFNEMVKNE---NVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENH-CSDLSETGNL 423
             LF  MV  E   + ++H      +      DD   A++ ++ M ++H CS    T N 
Sbjct: 352 RQLFQVMVSRECKPDTVSHNIMIDGLSKAKRLDD---AVEVFERMEQDHGCSPDLVTYNS 408

Query: 424 LVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKA 466
           L+ GLC    L EA+K  K +    +   P A + L + +  A
Sbjct: 409 LIFGLCGEQRLSEAMKVFKEIDRLKLSPDPHAFNVLLEAMYAA 451



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 87/384 (22%), Positives = 148/384 (38%), Gaps = 49/384 (12%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSL----ATFASVFSSYVVADRVKDAITTF 158
           AW   +  L K+   +  ++A ++M++    S      T  SV      A RV  A++  
Sbjct: 13  AWTAFLGGLCKSGKIEQAFEACRTMQESLSSSQPPSSGTCHSVIQELCKAGRVDSALSLL 72

Query: 159 DVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDT---YAILLEGWE 215
           + M + G   D+   + L++ +C+  K  +A +FL+ ++  I     +   Y  LL    
Sbjct: 73  ETMIKRGYCPDMATHSMLINELCKADKIQEAQEFLQGMNRTISTRASSCFSYNSLLNSLC 132

Query: 216 KERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC--DGIYETVNSLKRMMERGC 273
           K + V  A   F  MV E    PD V    SY I +   C  D +       K+M++  C
Sbjct: 133 KAKKVHQAFAIFSTMVSERSVVPDVV----SYSILIDGFCKIDELGRAEKLYKQMIDLNC 188

Query: 274 NPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAM 333
            P +T +       +    +  A+ ++  M+   G  PD   Y+ +I  +  + +   A 
Sbjct: 189 VPNVTTYNAFLNGLMRKGRIADAQGVYEEMIS-AGCSPDVITYSTLIHGFSLARKHDQAH 247

Query: 334 KLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVY 393
           +L + M+  G  P+  TYN L   L K  K  EA  LF                      
Sbjct: 248 ELFEAMISRGCRPNAVTYNCLLHGLCKESKPDEAHELF---------------------- 285

Query: 394 MDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTP 453
                        + M+E  C     T   L+ G C++  + +AV+    M  KG     
Sbjct: 286 -------------RKMVERGCDPDKVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDV 332

Query: 454 FALSKLKQILIKARKEAVYEELLK 477
            A + L +   +A K     +L +
Sbjct: 333 VAYNCLLKGFFRAGKPGEARQLFQ 356


>gi|291622145|emb|CBJ23782.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 630

 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 76/304 (25%), Positives = 139/304 (45%), Gaps = 5/304 (1%)

Query: 136 ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRV 195
            TF ++     + ++  +A+   D M   GC+ D+F   ++++ +C+ G    A   L+ 
Sbjct: 187 VTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKK 246

Query: 196 VD-GRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG 254
           ++ G+I+ +   Y  +++G  K + + +A   F +M  + G  PD V  Y+S LI+ L  
Sbjct: 247 MEKGKIEANVVIYNTIIDGLCKYKHMDDAFDLFNKMETK-GIKPD-VFTYNS-LISCLCN 303

Query: 255 CDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTH 314
                +    L  M+ER  NP +  F    +       L  AE ++  M+ R    P+  
Sbjct: 304 YGRWSDASRLLSDMIERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQR-SIDPNIV 362

Query: 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
            YN +I+ +C  +    A ++   MV     PD+ TYN L +   K +++ E   LF EM
Sbjct: 363 TYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLIKGFCKAKRVEEGMELFREM 422

Query: 375 VKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHML 434
            +   V N       ++    + D  +A K +K M+ +       T ++L+ GLC    L
Sbjct: 423 SQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKL 482

Query: 435 PEAV 438
            +A+
Sbjct: 483 EKAL 486



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 57/245 (23%), Positives = 105/245 (42%), Gaps = 11/245 (4%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           ++ T+ S+ + + + DR+ +A   F +M    C  DV   N+L+   C+  +  +  +  
Sbjct: 360 NIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLIKGFCKAKRVEEGMELF 419

Query: 194 RVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
           R +  R +  +  TY  L++G  +  D   A+K F +MV + G  PD +    +Y I L 
Sbjct: 420 REMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSD-GVPPDII----TYSILLD 474

Query: 253 KGC--DGIYETVNSLKRMMERGCNPGMTFFKLAFEE-CLTGQNLRGAEFIWGAMVGRIGF 309
             C    + + +   + + +    P +  + +  E  C  G+   G +      +   G 
Sbjct: 475 GLCKYGKLEKALVVFEYLQKSKMEPNIYTYNIMIEGMCKAGKVEDGWDLFCSLSLK--GV 532

Query: 310 RPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASG 369
           +P+  +Y  MIS +C       A  L  EM  +G  PD   YN L    ++      ++ 
Sbjct: 533 KPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPDSGCYNTLIRARLRDGDKAASAE 592

Query: 370 LFNEM 374
           L  EM
Sbjct: 593 LIKEM 597



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 67/283 (23%), Positives = 116/283 (40%), Gaps = 17/283 (6%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-F 192
           ++ TF S+  ++    ++ +A   FD M Q     ++   NSL++  C   +  +A Q F
Sbjct: 325 NVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIF 384

Query: 193 LRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIE--VGWDPDNVPAYDSYLIT 250
             +V     PD  TY  L++G+ K + V    + F EM     VG    N   Y++ +  
Sbjct: 385 TLMVSKDCLPDVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVG----NTVTYNTLIQG 440

Query: 251 LLKG--CDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIG 308
           L +   CD   +     K+M+  G  P +  + +  +       L  A  ++   + +  
Sbjct: 441 LFQAGDCDMAQKI---FKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVF-EYLQKSK 496

Query: 309 FRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFE-FLVKGRKLWEA 367
             P+ + YN+MI   C + +      L   +   G  P++  Y  +   F  KG K  EA
Sbjct: 497 MEPNIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLK-EEA 555

Query: 368 SGLFNEMVKNENVLNHENC-RAAVRVYMDSDDPYVAIKFWKYM 409
             LF EM K +  L    C    +R  +   D   + +  K M
Sbjct: 556 DALFREM-KEDGTLPDSGCYNTLIRARLRDGDKAASAELIKEM 597



 Score = 51.6 bits (122), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 67/165 (40%), Gaps = 1/165 (0%)

Query: 299 IWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFL 358
           + G M+ ++G+ PD    + +++ YC+      A+ L+D+MV  G  PD  T+N L   L
Sbjct: 138 VLGKMM-KLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMVEMGYKPDTVTFNTLIHGL 196

Query: 359 VKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLS 418
               K  EA  L + MV      +       V       D  +A+   K M +       
Sbjct: 197 FLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEANV 256

Query: 419 ETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQIL 463
              N ++ GLC    + +A      M  KGI+   F  + L   L
Sbjct: 257 VIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNSLISCL 301



 Score = 39.7 bits (91), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 33/148 (22%), Positives = 64/148 (43%), Gaps = 1/148 (0%)

Query: 301 GAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVK 360
           G  +  +G   + + Y+++++ +C  ++   A+ +L +M+  G  PDI T + L      
Sbjct: 104 GEQMQNLGIPHNHYTYSILLNCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCH 163

Query: 361 GRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSET 420
           G+++ EA  L ++MV+     +       +      +    A+     M+   C     T
Sbjct: 164 GKRISEAVALVDQMVEMGYKPDTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFT 223

Query: 421 GNLLVAGLCDMHMLPEAVKYAKGMAEKG 448
              +V GLC    +  A+   K M EKG
Sbjct: 224 YGTVVNGLCKRGDIDLALSLLKKM-EKG 250


>gi|225439731|ref|XP_002272943.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic [Vitis vinifera]
          Length = 772

 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 113/475 (23%), Positives = 190/475 (40%), Gaps = 64/475 (13%)

Query: 17  PHNKRKRSTFASHLDVPNLPPTIKTLCEIIANTPSPTVEDVLDKTLIRVSQETVEQVLKF 76
           P +K    T   H D   + P+  TL      +PSPT +   + T  ++      Q    
Sbjct: 33  PFSKLISFTSTHHHDQQAVSPSFSTL------SPSPTTQLPQNFTPKQLRDALRRQ---- 82

Query: 77  SYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENV-LSL 135
             S     +    W++ Q N   S   +  V+  LGK+  F +M   ++ MK     +  
Sbjct: 83  --SDEDSILDLLDWASKQPNFVPSSVIYEEVLRKLGKDGSFGSMRRVLQEMKHTGCEIRR 140

Query: 136 ATFASVFSSYVVADRVKDAITTFDVMEQ-YGCKHDVFALNSLLSAICRDGKTIDAWQFL- 193
            TF  +  SY   +   +A+   D+ME+ +G K D F  N LL+ +  DG  +   + + 
Sbjct: 141 GTFLILIESYAKFELFDEAVAVVDIMEEEFGLKLDAFTYNFLLNVLV-DGNKLKLVEIVN 199

Query: 194 -RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
            R+V   IKPD  T+ IL++   +   +  A     EM    G  PD     +    TL+
Sbjct: 200 SRMVSRGIKPDVTTFNILIKALCRAHQIRPAILMMEEMG-SYGLSPD-----EKTFTTLM 253

Query: 253 KGC---DGIYETVNSLKRMMERGC-NPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIG 308
           +G      +   +   ++M+  GC +  +T   L    C  G+      FI    +   G
Sbjct: 254 QGFIEEGNMNGALRIREQMVAAGCPSSNVTVNVLVHGYCKEGRIEEVLSFI--DEMSNEG 311

Query: 309 FRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEAS 368
           FRPD   +N +++  C       A+++LD M+  G  PDI TYN L   L K  ++ EA 
Sbjct: 312 FRPDRFTFNSLVNGLCRIGHVKHALEILDVMLQEGFDPDIFTYNSLIFGLCKLGEVEEAV 371

Query: 369 GLFNEMVKNE--------NVLNHENCR---------------------------AAVRVY 393
            + N+M+  +        N L    C+                           + ++  
Sbjct: 372 EILNQMILRDFSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGL 431

Query: 394 MDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448
             +++  +A++ ++ M    C     T N+L+  LC    L EA+   K M   G
Sbjct: 432 CLTNNHRLAMELFEEMKTKGCHPDEFTYNMLIDSLCSRGRLEEALSLLKEMESSG 486



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/233 (30%), Positives = 112/233 (48%), Gaps = 9/233 (3%)

Query: 145 YVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRV-VDGRIKPD 203
           Y    R+++ ++  D M   G + D F  NSL++ +CR G    A + L V +     PD
Sbjct: 291 YCKEGRIEEVLSFIDEMSNEGFRPDRFTFNSLVNGLCRIGHVKHALEILDVMLQEGFDPD 350

Query: 204 NDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVN 263
             TY  L+ G  K  +V  A +   +M++   + P+ V  Y++ + TL K  +   E   
Sbjct: 351 IFTYNSLIFGLCKLGEVEEAVEILNQMILR-DFSPNTV-TYNTLISTLCK--ENQVEEAT 406

Query: 264 SLKRMM-ERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMIS 321
            L R++  +G  P + TF  L    CLT  N R A  ++  M  + G  PD   YNM+I 
Sbjct: 407 ELARVLTSKGILPDVCTFNSLIQGLCLT-NNHRLAMELFEEMKTK-GCHPDEFTYNMLID 464

Query: 322 LYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
             C       A+ LL EM  +G   ++ TYN L +   K +++ EA  +F+EM
Sbjct: 465 SLCSRGRLEEALSLLKEMESSGCSRNVVTYNTLIDGFCKNKRIEEAEEIFDEM 517



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 85/347 (24%), Positives = 151/347 (43%), Gaps = 9/347 (2%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           TF S+ +       VK A+   DVM Q G   D+F  NSL+  +C+ G+  +A + L  +
Sbjct: 318 TFNSLVNGLCRIGHVKHALEILDVMLQEGFDPDIFTYNSLIFGLCKLGEVEEAVEILNQM 377

Query: 197 DGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
             R   P+  TY  L+    KE  V  A +    ++   G  PD V  ++S LI  L   
Sbjct: 378 ILRDFSPNTVTYNTLISTLCKENQVEEATE-LARVLTSKGILPD-VCTFNS-LIQGLCLT 434

Query: 256 DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHM 315
           +     +   + M  +GC+P    + +  +   +   L  A  +   M    G   +   
Sbjct: 435 NNHRLAMELFEEMKTKGCHPDEFTYNMLIDSLCSRGRLEEALSLLKEMESS-GCSRNVVT 493

Query: 316 YNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
           YN +I  +C +     A ++ DEM   G   ++ TYN L + L K R++ EA+ L ++M+
Sbjct: 494 YNTLIDGFCKNKRIEEAEEIFDEMELQGISRNVVTYNTLIDGLCKNRRVEEAAQLMDQML 553

Query: 376 KNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLP 435
                 +     + +  +  + D   A    + M  N C   S T   L+ GL     + 
Sbjct: 554 MEGLKPDKFTYNSLLTYFCRAGDIKKAADIVQTMTSNGCEPDSVTYGTLILGLSKAGRVE 613

Query: 436 EAVKYAKGMAEKGIQVTPFALSKLKQILIKARK--EAV--YEELLKK 478
            A +  + +  KG+ + P   + + + L + ++  EAV  + E+++K
Sbjct: 614 LASRLLRTVQLKGMVLAPQTYNPVIKALFREKRTSEAVRLFREMMEK 660



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 73/349 (20%), Positives = 139/349 (39%), Gaps = 42/349 (12%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVM 161
            +N ++  L K    +   +  + +  + +L  + TF S+     + +  + A+  F+ M
Sbjct: 388 TYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTNNHRLAMELFEEM 447

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDND-TYAILLEGWEKERDV 220
           +  GC  D F  N L+ ++C  G+  +A   L+ ++      N  TY  L++G+ K + +
Sbjct: 448 KTKGCHPDEFTYNMLIDSLCSRGRLEEALSLLKEMESSGCSRNVVTYNTLIDGFCKNKRI 507

Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFF 280
             A++ F EM  E+     NV  Y++ +  L K    + E    + +M+  G        
Sbjct: 508 EEAEEIFDEM--ELQGISRNVVTYNTLIDGLCKN-RRVEEAAQLMDQMLMEG-------- 556

Query: 281 KLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMV 340
                                        +PD   YN +++ +C + +   A  ++  M 
Sbjct: 557 ----------------------------LKPDKFTYNSLLTYFCRAGDIKKAADIVQTMT 588

Query: 341 YNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPY 400
            NG  PD  TY  L   L K  ++  AS L   +     VL  +     ++         
Sbjct: 589 SNGCEPDSVTYGTLILGLSKAGRVELASRLLRTVQLKGMVLAPQTYNPVIKALFREKRTS 648

Query: 401 VAIKFWKYMIENHCSDLSETGNLLVAGLCDMHM-LPEAVKYAKGMAEKG 448
            A++ ++ M+E      + T  ++  GLC     + EAV +   M +KG
Sbjct: 649 EAVRLFREMMEKGDPPDAVTYKVVFRGLCSGGGPIGEAVDFLVEMTDKG 697



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 69/294 (23%), Positives = 126/294 (42%), Gaps = 23/294 (7%)

Query: 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASVFSSYVVADRVKDAITTFDV 160
           + +N+++D L      +     +K M+      ++ T+ ++   +    R+++A   FD 
Sbjct: 457 FTYNMLIDSLCSRGRLEEALSLLKEMESSGCSRNVVTYNTLIDGFCKNKRIEEAEEIFDE 516

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERD 219
           ME  G   +V   N+L+  +C++ +  +A Q + +++   +KPD  TY  LL  + +  D
Sbjct: 517 MELQGISRNVVTYNTLIDGLCKNRRVEEAAQLMDQMLMEGLKPDKFTYNSLLTYFCRAGD 576

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMME--------R 271
           +  A      M    G +PD+V  Y + ++ L K   G  E  + L R ++        +
Sbjct: 577 IKKAADIVQTMTSN-GCEPDSV-TYGTLILGLSKA--GRVELASRLLRTVQLKGMVLAPQ 632

Query: 272 GCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCY-SNETG 330
             NP     K  F E  T + +R    ++  M+ + G  PD   Y ++    C      G
Sbjct: 633 TYNP---VIKALFREKRTSEAVR----LFREMMEK-GDPPDAVTYKVVFRGLCSGGGPIG 684

Query: 331 AAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHE 384
            A+  L EM   G  PD  ++ +L E L           L N ++K  N  + E
Sbjct: 685 EAVDFLVEMTDKGFLPDFSSFLMLAEGLCALSMEDTLIKLVNRVMKQANFSDSE 738


>gi|147840312|emb|CAN63985.1| hypothetical protein VITISV_001389 [Vitis vinifera]
          Length = 850

 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 89/383 (23%), Positives = 163/383 (42%), Gaps = 37/383 (9%)

Query: 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDV 160
           Y  N++++ L KN   +     +  M+++ V   + T+ ++ ++Y     +++A    D 
Sbjct: 359 YTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDS 418

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERD 219
           M   G K  VF  N++++ +C+ GK + A   L  ++   + PD  TY ILL    +  +
Sbjct: 419 MSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDN 478

Query: 220 VANAKKTFGEMVIEVGWDPDNVP-----------------------------AYDSYLIT 250
           + +A++ F EM  + G  PD V                              A D+ + T
Sbjct: 479 MMDAERIFDEMPSQ-GVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYT 537

Query: 251 LLKG--C-DGIY-ETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGR 306
           +L G  C +G+  E +     M+E+GC   +  +          + L  A+ ++  M  R
Sbjct: 538 ILIGGFCRNGVMSEALKVRDEMLEQGCXLDVVTYNTILNGLCKEKMLSEADELFTEMTER 597

Query: 307 IGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWE 366
            G  PD + +  +I+ Y        A+ L + M+     PD+ TYN L +   KG ++ +
Sbjct: 598 -GVFPDFYTFTTLINGYXKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEK 656

Query: 367 ASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVA 426
            + L+N+M+      NH +    +  Y +      A + W  M+E        T N +V 
Sbjct: 657 VNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVK 716

Query: 427 GLCDMHMLPEAVKYAKGMAEKGI 449
           G C      +A ++   M  KGI
Sbjct: 717 GYCRAGNAVKADEFLSNMLLKGI 739



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 75/316 (23%), Positives = 137/316 (43%), Gaps = 10/316 (3%)

Query: 118 DAMWDAIKSMKKENV-LSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSL 176
           D  W+  + + +  V +++ T   + ++     ++++  +    ME+ G   DV   N+L
Sbjct: 340 DLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTL 399

Query: 177 LSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVG 235
           ++A CR G   +A++ +  + G+ +KP   TY  ++ G  K      AK    EM +++G
Sbjct: 400 INAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEM-LKIG 458

Query: 236 WDPDNVPAYDSYLITLLKGC--DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNL 293
             PD      +Y I L++ C  D + +       M  +G  P +  F  A    L+    
Sbjct: 459 MSPDTA----TYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFS-ALIGLLSKNGC 513

Query: 294 RGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNI 353
                 +   +   G  PD  +Y ++I  +C +     A+K+ DEM+  G   D+ TYN 
Sbjct: 514 LDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCXLDVVTYNT 573

Query: 354 LFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENH 413
           +   L K + L EA  LF EM +     +       +  Y    +   A+  ++ MI+ +
Sbjct: 574 ILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYXKDGNMNKAVTLFEMMIQRN 633

Query: 414 CSDLSETGNLLVAGLC 429
                 T N L+ G C
Sbjct: 634 LKPDVVTYNTLIDGFC 649



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 88/324 (27%), Positives = 144/324 (44%), Gaps = 27/324 (8%)

Query: 138 FASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVV 196
           F  +  +YV A ++++    F V++  G    + A NSLL  + + G    AW+ +  VV
Sbjct: 291 FDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEVV 350

Query: 197 DGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD 256
              ++ +  T  I++    K + + N K    +M  E G  PD V  Y++ +    +   
Sbjct: 351 RSGVQVNVYTLNIMINALCKNQKIENTKSFLSDME-EKGVFPD-VVTYNTLINAYCR--Q 406

Query: 257 GIYETVNSL-KRMMERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTH 314
           G+ E    L   M  +G  P + T+  +    C TG+ LR A+ +   M+ +IG  PDT 
Sbjct: 407 GLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLR-AKGVLDEML-KIGMSPDTA 464

Query: 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
            YN+++   C ++    A ++ DEM   G  PD+ +++ L   L K   L +A   F +M
Sbjct: 465 TYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDM 524

Query: 375 VKNE---------NVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLV 425
            KN           +L    CR  V           A+K    M+E  C     T N ++
Sbjct: 525 -KNAGLAPDNVIYTILIGGFCRNGVMSE--------ALKVRDEMLEQGCXLDVVTYNTIL 575

Query: 426 AGLCDMHMLPEAVKYAKGMAEKGI 449
            GLC   ML EA +    M E+G+
Sbjct: 576 NGLCKEKMLSEADELFTEMTERGV 599



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 73/317 (23%), Positives = 135/317 (42%), Gaps = 53/317 (16%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKK-----ENVLSLATFASVFSSYVVADRVKDAITT 157
           +++ ++ LL KN   D      + MK      +NV+    +  +   +     + +A+  
Sbjct: 500 SFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVI----YTILIGGFCRNGVMSEALKV 555

Query: 158 FDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEK 216
            D M + GC  DV   N++L+ +C++    +A + F  + +  + PD  T+  L+ G+ K
Sbjct: 556 RDEMLEQGCXLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYXK 615

Query: 217 ERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSL-KRMMERG--- 272
           + ++  A   F EM+I+    PD V  Y++ +    KG +   E VN L   M+ R    
Sbjct: 616 DGNMNKAVTLF-EMMIQRNLKPD-VVTYNTLIDGFCKGSE--MEKVNELWNDMISRRIYP 671

Query: 273 ------------CNPGMT--FFKL-------AFEE------------CLTGQNLRGAEFI 299
                       CN G     F+L        FE             C  G  ++  EF+
Sbjct: 672 NHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFL 731

Query: 300 WGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLV 359
              ++   G  PD   YN +I+ +        A  L+++M  +G  PD+ TYN++     
Sbjct: 732 SNMLLK--GIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFS 789

Query: 360 KGRKLWEASGLFNEMVK 376
           +  ++ EA  +  +M++
Sbjct: 790 RQGRMQEAELIMLKMIE 806



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 65/281 (23%), Positives = 119/281 (42%), Gaps = 16/281 (5%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVM 161
            +N +++ L K  +     +    M +  V     TF ++ + Y     +  A+T F++M
Sbjct: 570 TYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYXKDGNMNKAVTLFEMM 629

Query: 162 EQYGCKHDVFALNSLLSAICRDG---KTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKER 218
            Q   K DV   N+L+   C+     K  + W    ++  RI P++ +Y IL+ G+    
Sbjct: 630 IQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWN--DMISRRIYPNHISYGILINGYCNMG 687

Query: 219 DVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNS---LKRMMERGCNP 275
            V+ A + + EMV E G++   +        T++KG       V +   L  M+ +G  P
Sbjct: 688 CVSEAFRLWDEMV-EKGFEATIITCN-----TIVKGYCRAGNAVKADEFLSNMLLKGIVP 741

Query: 276 GMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKL 335
               +       +  +N+  A  +   M    G  PD   YN++++ +        A  +
Sbjct: 742 DGITYNTLINGFIKEENMDRAFALVNKMENS-GLLPDVITYNVILNGFSRQGRMQEAELI 800

Query: 336 LDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK 376
           + +M+  G  PD  TY  L    V    L EA  + +EM++
Sbjct: 801 MLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQ 841


>gi|41152686|dbj|BAD08211.1| hypothetical protein [Oryza sativa Indica Group]
 gi|67906118|dbj|BAE00069.1| PPR protein [Oryza sativa Indica Group]
          Length = 794

 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 92/379 (24%), Positives = 159/379 (41%), Gaps = 21/379 (5%)

Query: 81  PGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCL-------FDAMWDAIKSMKKENVL 133
           P  AV  +   A    D+ +P      + L+G  C        F A+ + IK   + + +
Sbjct: 69  PAAAVSRYNRMARAGADEVTPNLCTYGI-LIGSCCCAGRLDLGFAALGNVIKKGFRVDAI 127

Query: 134 SLATFASVFSSYVVADRVKDAI-TTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQF 192
           +   F  +        R  DA+      M Q GC  +VF+ N LL  +C + ++ +A + 
Sbjct: 128 A---FTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALEL 184

Query: 193 LRVV---DGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLI 249
           L+++    G   PD  +Y  ++ G+ KE D+  A  T+ EM ++ G  P NV  Y+S + 
Sbjct: 185 LQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEM-LDRGILP-NVVTYNSIIA 242

Query: 250 TLLKGCDGIYETVNSLKRMMERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIG 308
            L K    + + +  L  M++ G  P   T+  +    C +GQ      F+    +   G
Sbjct: 243 ALCKA-QAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFL--KKMHSDG 299

Query: 309 FRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEAS 368
             PD   YN ++   C +     A K+ D M   G  P+I TY  L +       L E  
Sbjct: 300 VEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMH 359

Query: 369 GLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGL 428
           GL + MV+N    NH      +  Y        A+  +  M +   +  + T   ++  L
Sbjct: 360 GLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGIL 419

Query: 429 CDMHMLPEAVKYAKGMAEK 447
           C    + +A++Y + M ++
Sbjct: 420 CKSGRVEDAMRYFEQMIDE 438



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 96/421 (22%), Positives = 180/421 (42%), Gaps = 33/421 (7%)

Query: 77  SYSHPGPAVKFFRWSAYQLNDKHSP--YAWNLVVDLLGKN--C-----LFDAMWDAIKSM 127
           S   P  A+ F +      +D   P    +N ++D L KN  C     +FD+M    + +
Sbjct: 281 SSGQPKEAIGFLKKMH---SDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTK--RGL 335

Query: 128 KKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTI 187
           K E    + T+ ++   Y     + +     D+M + G   + +  + L+ A  + GK  
Sbjct: 336 KPE----ITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVD 391

Query: 188 DAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDS 246
            A   F ++    + PD  TY  ++    K   V +A + F +M+ E    P N+  Y+S
Sbjct: 392 QAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDER-LSPGNI-VYNS 449

Query: 247 YLITLLKGCDGIYETVNSLKR----MMERG-CNPGMTFFKLAFEECLTGQNLRGAEFIWG 301
            + +L      I++  +  K     M++RG C   + F  +    C  G+ +  +E ++ 
Sbjct: 450 LIHSLC-----IFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIE-SEKLFD 503

Query: 302 AMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKG 361
            MV RIG +P+   Y+ +I  YC + +   A KLL  MV  G  PD  TYN L     K 
Sbjct: 504 LMV-RIGVKPNIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKI 562

Query: 362 RKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETG 421
            ++ +A  LF EM  +    +       ++    +     A + +  + E+       T 
Sbjct: 563 SRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTY 622

Query: 422 NLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKCKA 481
           N+++ GLC  ++  EA++  + +    +Q+     + +   L+K  +    ++L     A
Sbjct: 623 NIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSA 682

Query: 482 H 482
           +
Sbjct: 683 N 683



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 86/351 (24%), Positives = 148/351 (42%), Gaps = 26/351 (7%)

Query: 88  FRWSAYQLNDKHSPYAWNLVVD-LLGKNCLFDAMWDAIKSMKKENV-----LSLATFASV 141
            R+    ++++ SP   N+V + L+   C+FD  WD  K +  E +     L    F S+
Sbjct: 429 MRYFEQMIDERLSP--GNIVYNSLIHSLCIFDK-WDKAKELILEMLDRGICLDTIFFNSI 485

Query: 142 FSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRI 200
             S+    RV ++   FD+M + G K ++   ++L+   C  GK  +A + L  +V   +
Sbjct: 486 IDSHCKEGRVIESEKLFDLMVRIGVKPNIITYSTLIDGYCLAGKMDEATKLLASMVSVGM 545

Query: 201 KPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYE 260
           KPD  TY  L+ G+ K   + +A   F EM    G  PD +    +Y I L     G+++
Sbjct: 546 KPDCVTYNTLINGYCKISRMEDALVLFREME-SSGVSPDII----TYNIIL----QGLFQ 596

Query: 261 TVNSLKR------MMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTH 314
           T  +         + E G    ++ + +     L   NL          +     + +T 
Sbjct: 597 TRRTAAAKELYVGITESGTQLELSTYNIILHG-LCKNNLTDEALRMFQNLCLTDLQLETR 655

Query: 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
            +N+MI           A  L   +  NG  PD++TY+++ E L++   L E   LF  M
Sbjct: 656 TFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSM 715

Query: 375 VKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLV 425
            +N    N     + VR  +   D   A  +   + E H S  + T +L +
Sbjct: 716 EENGCTANSRMLNSIVRKLLQRGDITRAGTYLFMIDEKHFSLEASTASLFL 766



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 72/307 (23%), Positives = 120/307 (39%), Gaps = 14/307 (4%)

Query: 152 KDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDG---RIKPDNDTYA 208
           +DA   FD + + G    ++ LN  L+ + R        ++ R+       + P+  TY 
Sbjct: 36  EDARHVFDELLRRGRGASIYGLNCALADVARHSPAAAVSRYNRMARAGADEVTPNLCTYG 95

Query: 209 ILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNS---- 264
           IL+        +       G  VI+ G+  D +         LLKG      T ++    
Sbjct: 96  ILIGSCCCAGRLDLGFAALGN-VIKKGFRVDAIA-----FTPLLKGLCADKRTSDAMDIV 149

Query: 265 LKRMMERGCNPGMTFFKLAFEE-CLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLY 323
           L+RM + GC P +  + +  +  C   ++    E +           PD   Y  +I+ +
Sbjct: 150 LRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGF 209

Query: 324 CYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNH 383
               +   A     EM+  G  P++ TYN +   L K + + +A  +   MVKN  + N 
Sbjct: 210 FKEGDLDKAYGTYHEMLDRGILPNVVTYNSIIAALCKAQAMDKAMEVLTSMVKNGVMPNC 269

Query: 384 ENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKG 443
               + V  Y  S  P  AI F K M  +       T N L+  LC      EA K    
Sbjct: 270 RTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDS 329

Query: 444 MAEKGIQ 450
           M ++G++
Sbjct: 330 MTKRGLK 336


>gi|359475765|ref|XP_002273555.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Vitis vinifera]
          Length = 935

 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 79/320 (24%), Positives = 137/320 (42%), Gaps = 5/320 (1%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           ++  ++++   Y    R+++A    D M   G   D+F  N+++S + + GK  +A  +L
Sbjct: 383 NVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYL 442

Query: 194 RVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
             + GR +KPD  T+   + G+ K   +  A K F EM ++ G  P+N P Y + LI   
Sbjct: 443 LEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEM-LDHGLMPNN-PLY-TVLINGH 499

Query: 253 KGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD 312
                + E ++  + +   G  P +          L    ++ A  ++  +  + G  PD
Sbjct: 500 FKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEK-GLVPD 558

Query: 313 THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFN 372
              Y+ +IS +C   E   A +L DEM   G  P+I  YN L + L K   +  A  LF+
Sbjct: 559 VFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFD 618

Query: 373 EMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMH 432
            M +     +       +  Y  S++   A   +  M        S   N LV G C   
Sbjct: 619 GMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEG 678

Query: 433 MLPEAVKYAKGMAEKGIQVT 452
            + +A+   + M +KG   T
Sbjct: 679 DMEKAMNLFREMLQKGFATT 698



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 77/305 (25%), Positives = 131/305 (42%), Gaps = 11/305 (3%)

Query: 150 RVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYA 208
           RV++A+  F  +++ G   DVF  +SL+S  C+ G+   A++    +    I P+   Y 
Sbjct: 539 RVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYN 598

Query: 209 ILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRM 268
            L++G  K  D+  A+K F  M  E G +PD+V  Y + +    K  + + E  +    M
Sbjct: 599 ALVDGLCKSGDIQRARKLFDGMP-EKGLEPDSV-TYSTMIDGYCKS-ENVAEAFSLFHEM 655

Query: 269 MERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNE 328
             +G  P    +      C    ++  A  ++  M+ + GF   T  +N +I  YC S +
Sbjct: 656 PSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQK-GF-ATTLSFNTLIDGYCKSCK 713

Query: 329 TGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRA 388
              A +L  EM+     PD  TY  + ++  K  K+ EA+ LF EM +   +++     +
Sbjct: 714 IQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTS 773

Query: 389 AVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKY-----AKG 443
            +  Y            ++ M+         T  L++   C    L EA K       KG
Sbjct: 774 LMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKG 833

Query: 444 MAEKG 448
           M  KG
Sbjct: 834 MLTKG 838



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 82/339 (24%), Positives = 145/339 (42%), Gaps = 18/339 (5%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           T++S+ S +     V+ A    D M   G   ++F  N+L+  +C+ G   D  +  ++ 
Sbjct: 561 TYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSG---DIQRARKLF 617

Query: 197 DGR----IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
           DG     ++PD+ TY+ +++G+ K  +VA A   F EM  + G  P +   Y++    L+
Sbjct: 618 DGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSK-GVQPHSF-VYNA----LV 671

Query: 253 KGC--DGIYE-TVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGF 309
            GC  +G  E  +N  + M+++G    ++F  L    C + + ++ A  ++  M+ +   
Sbjct: 672 HGCCKEGDMEKAMNLFREMLQKGFATTLSFNTLIDGYCKSCK-IQEASQLFQEMIAK-QI 729

Query: 310 RPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASG 369
            PD   Y  +I  +C + +   A  L  EM       D  TY  L     K  +  E   
Sbjct: 730 MPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGYNKLGQSSEVFA 789

Query: 370 LFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLC 429
           LF +MV      +       +  +   D+   A K    ++           +LL+  LC
Sbjct: 790 LFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALC 849

Query: 430 DMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARK 468
               L EA K    M E G++ +  A S L +   +A K
Sbjct: 850 KREDLTEASKLLDEMGELGLKPSLAACSTLVRSFHEAGK 888



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 71/286 (24%), Positives = 125/286 (43%), Gaps = 29/286 (10%)

Query: 102 YAWNLVVDLLGKNC-------LFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDA 154
           + +N +VD L K+        LFD M +  K ++ ++V    T++++   Y  ++ V +A
Sbjct: 595 FIYNALVDGLCKSGDIQRARKLFDGMPE--KGLEPDSV----TYSTMIDGYCKSENVAEA 648

Query: 155 ITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGW 214
            + F  M   G +   F  N+L+   C++G    A    R +  +      ++  L++G+
Sbjct: 649 FSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATTLSFNTLIDGY 708

Query: 215 EKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD-GIYETVNSL-KRMMERG 272
            K   +  A + F EM+ +       +P + +Y   +   C  G  E  N L K M ER 
Sbjct: 709 CKSCKIQEASQLFQEMIAK-----QIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERN 763

Query: 273 CNPGMTFFKLAFEECLTGQNLRGAE----FIWGAMVGRIGFRPDTHMYNMMISLYCYSNE 328
               +    + +   + G N  G       ++  MV + G +PD   Y ++I  +C  + 
Sbjct: 764 ----LIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAK-GVKPDEVTYGLVIYAHCKEDN 818

Query: 329 TGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
              A KL DE+V  G       +++L   L K   L EAS L +EM
Sbjct: 819 LVEAFKLRDEVVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEM 864



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 78/366 (21%), Positives = 144/366 (39%), Gaps = 44/366 (12%)

Query: 139 ASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVD 197
           +++   ++    + + +   DVM   G   ++   N L+  +C+ GK   A + L+ ++ 
Sbjct: 248 SALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMIT 307

Query: 198 GRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSY--LITLLKGC 255
              KP++ T+ +L+EG+ +E ++  A +   EM        + VP+  SY  +I  L  C
Sbjct: 308 LGCKPNSRTFCLLIEGYCREHNMGRALELLDEM-----EKRNLVPSAVSYGAMINGLCHC 362

Query: 256 DGIYETVNSLKRMMERGCNPGMTFFKLAF---------EEC---LTGQNLRGAE---FIW 300
             +      L++M   G  P +  +             EE    L G +  G     F +
Sbjct: 363 KDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCY 422

Query: 301 GAMV--------------------GRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMV 340
            A++                    GR G +PD   +   I  Y  + +   A K  DEM+
Sbjct: 423 NAIISCLSKAGKMEEASTYLLEIQGR-GLKPDAVTFGAFILGYSKTGKMTEAAKYFDEML 481

Query: 341 YNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPY 400
            +G  P+   Y +L     K   L EA  +F  +     + + + C A +   + +    
Sbjct: 482 DHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQ 541

Query: 401 VAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLK 460
            A+K +  + E        T + L++G C    + +A +    M  KGI    F  + L 
Sbjct: 542 EALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALV 601

Query: 461 QILIKA 466
             L K+
Sbjct: 602 DGLCKS 607



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 60/264 (22%), Positives = 113/264 (42%), Gaps = 16/264 (6%)

Query: 116 LFDAMWDAIKSM----KKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVF 171
           +FD + D+ K M    +  NV  +A   S+  S +  + ++        M + G   + +
Sbjct: 158 VFDILIDSYKRMGMLDEAANVFFVAKNDSILISLIRCNSLRS-------MGEKGLVPNTY 210

Query: 172 ALNSLLSAICRDGKTIDA-WQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEM 230
               + + +CR  +  +A   F  +    +KPD +  + L++G+ +E D+    +   ++
Sbjct: 211 TYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLR-IKDV 269

Query: 231 VIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTG 290
           ++  G  P N+  Y+  +  L K    + +    LK M+  GC P    F L  E     
Sbjct: 270 MVSCGI-PINLITYNVLIHGLCK-FGKMEKAAEILKGMITLGCKPNSRTFCLLIEGYCRE 327

Query: 291 QNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQT 350
            N+  A  +   M  R    P    Y  MI+  C+  +   A KLL++M ++G  P++  
Sbjct: 328 HNMGRALELLDEMEKR-NLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVV 386

Query: 351 YNILFEFLVKGRKLWEASGLFNEM 374
           Y+ L        ++ EA  L + M
Sbjct: 387 YSTLIMGYASEGRIEEARRLLDGM 410



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 71/306 (23%), Positives = 130/306 (42%), Gaps = 24/306 (7%)

Query: 81  PGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFAS 140
           P   + FF WS  Q+       +++++   L  + LF      +  M +    S +   S
Sbjct: 84  PKRLLDFFYWSQSQMGVPQFLDSFSILAVQLCNSELFGLANGVLTQMIRTPYSSSSILDS 143

Query: 141 VF--------SSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQF 192
           V         SS VV D + D+     ++++      V   +S+L ++ R          
Sbjct: 144 VLFWFRNYGGSSPVVFDILIDSYKRMGMLDEAANVFFVAKNDSILISLIR-------CNS 196

Query: 193 LRVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITL 251
           LR +  + + P+  TY I+  G  + + +  AK TF EM  + G  PD   A  + +   
Sbjct: 197 LRSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQ-KTGLKPD-YNACSALIDGF 254

Query: 252 LKGCDGIYETVNSLKRMMERGCNP--GMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGF 309
           ++  +G  + V  +K +M     P   +T+  L    C  G+  + AE + G +   +G 
Sbjct: 255 MR--EGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMIT--LGC 310

Query: 310 RPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASG 369
           +P++  + ++I  YC  +  G A++LLDEM      P   +Y  +   L   + L  A+ 
Sbjct: 311 KPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANK 370

Query: 370 LFNEMV 375
           L  +M 
Sbjct: 371 LLEKMT 376



 Score = 42.7 bits (99), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 49/115 (42%)

Query: 336 LDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMD 395
           L  M   G  P+  TY I+   L + +++ EA   F EM K     ++  C A +  +M 
Sbjct: 197 LRSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMR 256

Query: 396 SDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQ 450
             D    ++    M+         T N+L+ GLC    + +A +  KGM   G +
Sbjct: 257 EGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCK 311


>gi|302803484|ref|XP_002983495.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
 gi|300148738|gb|EFJ15396.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
          Length = 561

 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 130/299 (43%), Gaps = 14/299 (4%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           T+ S+      A ++  A    D M   G    V   N ++  +C+ G+  DA  + + V
Sbjct: 32  TYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVIRGLCKAGRFGDALGYFKTV 91

Query: 197 DG-RIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
            G +  PD  T+ IL++   K   V  A + F  M       P NV  Y + +  L K  
Sbjct: 92  AGTKCTPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLP-NVVTYTTVINGLCK-- 148

Query: 256 DG-IYETVNSLKRMMERGCNPGMTFFKLAFEE-CLTGQNLRGAEFIWGAMVGRIGFRPDT 313
           DG +   +  L  M E GC P +  + +  E  C  G+  +G  F     + R GF+PD 
Sbjct: 149 DGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKG--FTLLQEMTRRGFQPDV 206

Query: 314 HMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNE 373
            MYN +++  C S     A++L+  M+ +G +P + TYN L E   + +++  A  L   
Sbjct: 207 IMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQV 266

Query: 374 MVKN---ENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLC 429
           M +     +V+N+    A +      DD   A    K M+   C     T + ++ GLC
Sbjct: 267 MSERGCPPDVINYNTVIAGLCRDARLDD---AQALLKQMVAARCVPDVITYSTIIDGLC 322



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 97/411 (23%), Positives = 166/411 (40%), Gaps = 52/411 (12%)

Query: 82  GPAVKFFRWSAYQLNDKHSP--YAWNLVVDLLGKNCLFDAMWDAIKSM--KKENVLSLAT 137
           G A+ +F+  A     K +P    +N++VD L K+   +  +   +SM    + + ++ T
Sbjct: 82  GDALGYFKTVA---GTKCTPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVT 138

Query: 138 FASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVD 197
           + +V +      ++  AI   D+M + GC  +V   + L+  +C+ G+T   +  L+ + 
Sbjct: 139 YTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMT 198

Query: 198 GR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD 256
            R  +PD   Y  LL G  K R +  A +   +++I  G  P  V  Y+S L+ L     
Sbjct: 199 RRGFQPDVIMYNTLLNGLCKSRRLDEALELV-QLMIRSGCYP-TVVTYNS-LMELFCRSK 255

Query: 257 GIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMY 316
            +      ++ M ERGC P +  +            L  A+ +   MV      PD   Y
Sbjct: 256 QVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCV-PDVITY 314

Query: 317 NMMISLYCYSNETG------AAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGL 370
           + +I   C            AA ++L+ M   G  P+  TY ++ E L + RK  +A  L
Sbjct: 315 STIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALAL 374

Query: 371 FNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCS-----------DLSE 419
              M+ +E V +  +    +     S D   A K +  M E  C             LS+
Sbjct: 375 LRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSK 434

Query: 420 TG-----------------------NLLVAGLCDMHMLPEAVKYAKGMAEK 447
            G                       N ++ GLC +  + EAV+  +GM  K
Sbjct: 435 GGEVDKAVRVFELMVESFRPGVATYNSVLDGLCGVGRIEEAVRMVEGMIHK 485



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 74/332 (22%), Positives = 133/332 (40%), Gaps = 50/332 (15%)

Query: 104 WNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVME 162
           +N +++ L K+   D   + ++ M +     ++ T+ S+   +  + +V  A     VM 
Sbjct: 209 YNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMS 268

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYAILLEG----WEKE 217
           + GC  DV   N++++ +CRD +  DA   L+ +V  R  PD  TY+ +++G    W  +
Sbjct: 269 ERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVD 328

Query: 218 RD-VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPG 276
            D    A     EM+ + G  P N   Y   +  L +      + +  L+RM++    P 
Sbjct: 329 ADWKLEAACEILEMMKQTGC-PPNAGTYAVVIEGLCRA-RKSQQALALLRRMIDSEVVPD 386

Query: 277 MTFFKLAFEECLTGQNLRGAEFIWGAMVGR------------------------------ 306
           ++ F +         +L  A  I+G M  R                              
Sbjct: 387 LSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFE 446

Query: 307 ---IGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRK 363
                FRP    YN ++   C       A+++++ M++   FPD  +Y  L   L +   
Sbjct: 447 LMVESFRPGVATYNSVLDGLCGVGRIEEAVRMVEGMIHKECFPDGASYGALIRGLCRVSC 506

Query: 364 LWEASGLFNEM--------VKNENVLNHENCR 387
           + EA  LF  +        V   NVL +E C+
Sbjct: 507 VEEAYELFQAVEAKGFAMEVGVYNVLVNELCK 538



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 65/162 (40%), Gaps = 1/162 (0%)

Query: 308 GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEA 367
           G  P   ++N +I   C +   G A+     +      PDI T+NIL + LVK  ++ EA
Sbjct: 60  GIPPGVAVHNGVIRGLCKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGRVEEA 119

Query: 368 SGLFNEMVKNENVLNHENCRAAVRVYMDSDDPY-VAIKFWKYMIENHCSDLSETGNLLVA 426
             +F  M  +   L +      V   +  D     AI+    M E  C     T ++LV 
Sbjct: 120 FQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVE 179

Query: 427 GLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARK 468
           GLC      +     + M  +G Q      + L   L K+R+
Sbjct: 180 GLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRR 221


>gi|449455956|ref|XP_004145716.1| PREDICTED: pentatricopeptide repeat-containing protein At5g16420,
           mitochondrial-like [Cucumis sativus]
 gi|449492939|ref|XP_004159147.1| PREDICTED: pentatricopeptide repeat-containing protein At5g16420,
           mitochondrial-like [Cucumis sativus]
          Length = 535

 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 96/381 (25%), Positives = 159/381 (41%), Gaps = 79/381 (20%)

Query: 138 FASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVD 197
           F +V  SY +A R K A+ TF  ++ +G +  V +LN+LL+A+ ++ +        +   
Sbjct: 124 FITVIRSYGLASRPKMALKTFLRIQTFGVRRSVRSLNTLLNALVQNNRFSSVHLLFKYSK 183

Query: 198 GR--IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
            +  + P+  T  IL++   K+ DV  A+K F EM   +G  P NV  Y     T+L G 
Sbjct: 184 SKFGVVPNVFTCNILIKALCKKNDVEGARKVFDEMP-SMGIVP-NVVTYT----TILGG- 236

Query: 256 DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHM 315
                        + RG                   ++ GA+ ++G +    G+ PD   
Sbjct: 237 ------------YVSRG-------------------DMIGAKRVFGELFDH-GWLPDATT 264

Query: 316 YNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
           Y +++  Y        A+K++DEM  NG  P+  TY ++     K RK  EA  L N+M+
Sbjct: 265 YTILMDGYVKQGRFTDAVKVMDEMEENGVEPNDITYGVIILGYCKERKSGEALNLLNDML 324

Query: 376 KNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSD-----------LSETGNL- 423
           + + + N   C   + V         A K W+ +++ +C+            L + GN+ 
Sbjct: 325 EKKYIPNSALCCKVIDVLCGEGRVKEACKMWEKLLKKNCTPDNAITSTLIHWLCKEGNIW 384

Query: 424 ----------------------LVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQ 461
                                 L+AG+C+M  L EA +    M EKG     F  + L +
Sbjct: 385 EARKLFNEFERGTISSLLTYNTLIAGMCEMGELCEAARLWDDMLEKGCVPNEFTYNMLIK 444

Query: 462 ILIKARKE----AVYEELLKK 478
             +K  K      V EE+L K
Sbjct: 445 GFLKVGKAKEVIKVVEEMLDK 465



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 81/392 (20%), Positives = 157/392 (40%), Gaps = 34/392 (8%)

Query: 60  KTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDA 119
           KT +R+    V + ++   +     V+  R+S+  L  K+S   + +V ++   N L  A
Sbjct: 142 KTFLRIQTFGVRRSVRSLNTLLNALVQNNRFSSVHLLFKYSKSKFGVVPNVFTCNILIKA 201

Query: 120 M------------WDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCK 167
           +            +D + SM    V ++ T+ ++   YV    +  A   F  +  +G  
Sbjct: 202 LCKKNDVEGARKVFDEMPSMGI--VPNVVTYTTILGGYVSRGDMIGAKRVFGELFDHGWL 259

Query: 168 HDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERDVANAKKT 226
            D      L+    + G+  DA + +  + +  ++P++ TY +++ G+ KER    A   
Sbjct: 260 PDATTYTILMDGYVKQGRFTDAVKVMDEMEENGVEPNDITYGVIILGYCKERKSGEALNL 319

Query: 227 FGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEE 286
             +M +E  + P++  A    +I +L G   + E     ++++++ C P           
Sbjct: 320 LNDM-LEKKYIPNS--ALCCKVIDVLCGEGRVKEACKMWEKLLKKNCTPDNAITSTLIHW 376

Query: 287 CLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFP 346
                N+  A  ++       G       YN +I+  C   E   A +L D+M+  G  P
Sbjct: 377 LCKEGNIWEARKLFNEF--ERGTISSLLTYNTLIAGMCEMGELCEAARLWDDMLEKGCVP 434

Query: 347 DIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVR--------------V 392
           +  TYN+L +  +K  K  E   +  EM+    +LN       V               +
Sbjct: 435 NEFTYNMLIKGFLKVGKAKEVIKVVEEMLDKGCLLNESTYLILVEGLLKLGKREELLNIL 494

Query: 393 YMDSDDPYVAIKFWKYMIENHCSDLSETGNLL 424
            M      V  K W   + +  S+++E  N+L
Sbjct: 495 SMIISSGAVDFKAWNLFVPHFVSNVNEQANIL 526


>gi|297803426|ref|XP_002869597.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315433|gb|EFH45856.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 538

 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 93/417 (22%), Positives = 174/417 (41%), Gaps = 28/417 (6%)

Query: 84  AVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDA-------------------MWDAI 124
           + +FF W+  +    HS     +V+  L KN  F +                   ++DA+
Sbjct: 98  SFEFFNWAKTRNPASHSLETHAIVLHTLTKNRKFKSAESILRDVLVNGGVDLPAKVFDAL 157

Query: 125 KSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDG 184
               +E   +   F S+F ++    + ++A  TF  M+ YG    V + N+ +S++   G
Sbjct: 158 LYSYRECDSTPRVFDSLFKTFAHLKKFRNATDTFMQMKDYGFLPTVESCNAYMSSLLGQG 217

Query: 185 KTIDAWQFLRVVDG-RIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPA 243
           +   A +F R +   +I P+  T  +++ G+ +   +    +   +M   +G+   +V  
Sbjct: 218 RVDIALRFYREMRRCKISPNTYTLNMVMSGYCRSGKLDKGIELLQDME-RLGFRATHV-- 274

Query: 244 YDSYLITLLKGCD-GIYETVNSLKRMM-ERGCNPGMTFFKLAFEECLTGQNLRGAEFIWG 301
             SY   +   C+ G+  +   LK MM + G  P +  F            L+ A  ++G
Sbjct: 275 --SYNTLIAGHCEKGLLSSALKLKNMMGKNGLQPNVVTFNTLIHGFCRAVKLQEASKVFG 332

Query: 302 AMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKG 361
            M   +   P+T  YN +I+ Y    +   A +  ++MV NG   DI TYN L   L K 
Sbjct: 333 EMKA-LNLPPNTVTYNTLINGYSQQGDHEMAFRFYEDMVCNGIQRDILTYNTLILGLCKQ 391

Query: 362 RKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETG 421
            K  +A+    E+ K   V N     A +       +     + +K MI + C    +T 
Sbjct: 392 AKTRKAAQFVKELDKENLVPNSSTFSALIMGQCVRRNADRGFELYKSMIRSGCHPNEQTF 451

Query: 422 NLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKK 478
           N+L++  C       A +  + M  + I +    + ++   L    K+ + +ELL++
Sbjct: 452 NILISAFCKNEDFDGAAQVLREMVRRSIPLDSRTVHQVCNGLNHQGKDQLVKELLQE 508


>gi|226509112|ref|NP_001141010.1| uncharacterized protein LOC100273089 [Zea mays]
 gi|194702156|gb|ACF85162.1| unknown [Zea mays]
 gi|413937351|gb|AFW71902.1| hypothetical protein ZEAMMB73_497690 [Zea mays]
          Length = 567

 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 92/386 (23%), Positives = 164/386 (42%), Gaps = 43/386 (11%)

Query: 102 YAWN-LVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDV 160
           Y +N L+  L G+    +A+       ++  +  + T+  +  +       K A+   D 
Sbjct: 167 YTYNTLIRGLCGRGRTSNALAVLEDMFRRGCLPDVVTYTILLEATCKRSGYKQAMKLLDE 226

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDG-RIKPDNDTYAILLEGWEKERD 219
           M   GC  D+   N +L+ IC++G+  DA +FL+ +     +P+  +Y I+L+G      
Sbjct: 227 MHDKGCAPDIVTYNVVLNGICQEGRVEDAMEFLKNLPSYGCEPNTVSYNIVLKGLFTAER 286

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNP-GMT 278
             +A+K   EM  +    P NV  ++  LI+ L     +   +  L++M + GC P  ++
Sbjct: 287 WEDAEKLMEEMAHK--GCPPNVVTFN-MLISFLCRRGLVEPAMEVLEQMPQYGCTPNSLS 343

Query: 279 FFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDE 338
           +  L    C   +  +  EF+   MV R G  PD   YN +++  C + E   A++LL +
Sbjct: 344 YNPLLHAFCKQKKIHKAMEFVE-LMVSR-GCYPDIVSYNTLLTALCRNGEVDVAIELLHQ 401

Query: 339 MVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK---NENVLNHEN-----CR--- 387
           +   G  P + +YN + + L K  K  EA  L +EM       +++ +       CR   
Sbjct: 402 LKDKGCSPVLISYNTVIDGLTKAGKTKEALELLDEMTSKGLQPDIITYSTIASGLCREDR 461

Query: 388 --AAVRVYMDSDDPYV----------------------AIKFWKYMIENHCSDLSETGNL 423
              AVR +    D  +                      AI  + YMI + C     T  +
Sbjct: 462 IEEAVRTFCKVQDMGIRPTAALYNAILLGLCKRRETHNAIDLFAYMISSGCMPNESTYTI 521

Query: 424 LVAGLCDMHMLPEAVKYAKGMAEKGI 449
           LV GL    ++ EA +    +  +G+
Sbjct: 522 LVEGLAYEGLVKEARELFAQLCSRGV 547



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 81/320 (25%), Positives = 135/320 (42%), Gaps = 17/320 (5%)

Query: 169 DVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTF 227
           D +  N+L+  +C  G+T +A   L  +  R   PD  TY ILLE   K      A K  
Sbjct: 165 DAYTYNTLIRGLCGRGRTSNALAVLEDMFRRGCLPDVVTYTILLEATCKRSGYKQAMKLL 224

Query: 228 GEMVIEVGWDPDNVPAYDSYLITLLKGCD--GIYETVNSLKRMMERGCNPGMTFFKLAFE 285
            EM  + G  PD V    +Y + L   C    + + +  LK +   GC P    + +  +
Sbjct: 225 DEMH-DKGCAPDIV----TYNVVLNGICQEGRVEDAMEFLKNLPSYGCEPNTVSYNIVLK 279

Query: 286 ECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAF 345
              T +    AE +   M  + G  P+   +NM+IS  C       AM++L++M   G  
Sbjct: 280 GLFTAERWEDAEKLMEEMAHK-GCPPNVVTFNMLISFLCRRGLVEPAMEVLEQMPQYGCT 338

Query: 346 PDIQTYNILFEFLVKGRKLWEASGLFNEMVKN---ENVLNHENCRAAVRVYMDSDDPYVA 402
           P+  +YN L     K +K+ +A      MV      +++++     A+    + D   VA
Sbjct: 339 PNSLSYNPLLHAFCKQKKIHKAMEFVELMVSRGCYPDIVSYNTLLTALCRNGEVD---VA 395

Query: 403 IKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQI 462
           I+    + +  CS +  + N ++ GL       EA++    M  KG+Q      S +   
Sbjct: 396 IELLHQLKDKGCSPVLISYNTVIDGLTKAGKTKEALELLDEMTSKGLQPDIITYSTIASG 455

Query: 463 LIKARKEAVYEELLKKCKAH 482
           L   R++ + E +   CK  
Sbjct: 456 L--CREDRIEEAVRTFCKVQ 473



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 82/360 (22%), Positives = 151/360 (41%), Gaps = 17/360 (4%)

Query: 120 MWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSA 179
           + D++  +   +  ++   A++      + R  DA     V+   G   DV   N++++ 
Sbjct: 89  LVDSLAGLNPPSPAAVGPCAALIKKLCASGRTADA---RRVLAASG--PDVMVYNAMVAG 143

Query: 180 ICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPD 239
            C  G+ +DA + L V D  ++PD  TY  L+ G       +NA     +M    G  PD
Sbjct: 144 YCGAGQ-LDAARRL-VADMPVEPDAYTYNTLIRGLCGRGRTSNALAVLEDM-FRRGCLPD 200

Query: 240 NVPAYDSYLITLLKGC--DGIYETVNSLKRMMERGCNPGMTFFKLAFEE-CLTGQNLRGA 296
            V    +Y I L   C   G  + +  L  M ++GC P +  + +     C  G+     
Sbjct: 201 VV----TYTILLEATCKRSGYKQAMKLLDEMHDKGCAPDIVTYNVVLNGICQEGRVEDAM 256

Query: 297 EFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFE 356
           EF+    +   G  P+T  YN+++     +     A KL++EM + G  P++ T+N+L  
Sbjct: 257 EFLKN--LPSYGCEPNTVSYNIVLKGLFTAERWEDAEKLMEEMAHKGCPPNVVTFNMLIS 314

Query: 357 FLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSD 416
           FL +   +  A  +  +M +     N  +    +  +      + A++F + M+   C  
Sbjct: 315 FLCRRGLVEPAMEVLEQMPQYGCTPNSLSYNPLLHAFCKQKKIHKAMEFVELMVSRGCYP 374

Query: 417 LSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELL 476
              + N L+  LC    +  A++    + +KG      + + +   L KA K     ELL
Sbjct: 375 DIVSYNTLLTALCRNGEVDVAIELLHQLKDKGCSPVLISYNTVIDGLTKAGKTKEALELL 434



 Score = 42.7 bits (99), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 37/172 (21%), Positives = 73/172 (42%), Gaps = 7/172 (4%)

Query: 311 PDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGL 370
           PD  +YN M++ YC + +  AA +L+ +M      PD  TYN L   L    +   A  +
Sbjct: 132 PDVMVYNAMVAGYCGAGQLDAARRLVADMPVE---PDAYTYNTLIRGLCGRGRTSNALAV 188

Query: 371 FNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCD 430
             +M +   + +       +           A+K    M +  C+    T N+++ G+C 
Sbjct: 189 LEDMFRRGCLPDVVTYTILLEATCKRSGYKQAMKLLDEMHDKGCAPDIVTYNVVLNGICQ 248

Query: 431 MHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARK----EAVYEELLKK 478
              + +A+++ K +   G +    + + + + L  A +    E + EE+  K
Sbjct: 249 EGRVEDAMEFLKNLPSYGCEPNTVSYNIVLKGLFTAERWEDAEKLMEEMAHK 300


>gi|326500244|dbj|BAK06211.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 600

 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 87/326 (26%), Positives = 135/326 (41%), Gaps = 25/326 (7%)

Query: 167 KHDVFALNSLLSAICRDGKTIDAWQFLRVV-DGRIKPDNDTYAILLEGWEKERDVANAKK 225
           + +  +  +L+ A+C D +   A   LR + D  ++PD  TY  L+ G     DV  A +
Sbjct: 91  RPNAISYTTLMRALCADRRAAQAVGLLRSMQDCGVRPDVVTYGTLIRGLCDAADVDTAVE 150

Query: 226 TFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSL-KRMMERGCNPGMTFFKLAF 284
              EM  E G +P NV  Y   L    K   G +E+V  + + M  RG  P +  +    
Sbjct: 151 LLNEMC-ESGIEP-NVVVYSCLLHGYCK--TGRWESVGKVFEEMSGRGIEPDVVMYTALI 206

Query: 285 EECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGA 344
           +       ++ A  +   M  R G  P+   YN++I+  C       A+ L   M   G 
Sbjct: 207 DSLCRHGKVKKAARVMDMMTER-GLEPNVVTYNVLINSMCKEGSVREALDLRKNMSEKGV 265

Query: 345 FPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNE----------NVLNHENCRAAVRVYM 394
            PD+ TYN L   L    ++ EA  L  EM++ E          N + H  C+     +M
Sbjct: 266 QPDVVTYNTLITGLSSVLEMDEAMALLEEMMQGETRVRPDLMTFNSVIHGLCKIG---WM 322

Query: 395 DSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPF 454
                  A++    M EN C       NLL+ GL  +H + +A++    MA  G+Q   F
Sbjct: 323 RQ-----ALQVRAMMAENGCRCNLVAFNLLIGGLLRVHKVKKAMELMDEMASSGLQPDSF 377

Query: 455 ALSKLKQILIKARKEAVYEELLKKCK 480
             S L     K R+    E  L + +
Sbjct: 378 TYSILINGFCKMRQVERAESYLSEMR 403



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 102/225 (45%), Gaps = 10/225 (4%)

Query: 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL- 193
           L TF SV         ++ A+    +M + GC+ ++ A N L+  + R  K   A + + 
Sbjct: 306 LMTFNSVIHGLCKIGWMRQALQVRAMMAENGCRCNLVAFNLLIGGLLRVHKVKKAMELMD 365

Query: 194 RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLK 253
            +    ++PD+ TY+IL+ G+ K R V  A+    EM  + G +P+ V     + I LLK
Sbjct: 366 EMASSGLQPDSFTYSILINGFCKMRQVERAESYLSEMRHQ-GMEPEPV-----HYIPLLK 419

Query: 254 G-CD-GIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRP 311
             CD G+      L   M+R C      +             + AE     M+   G  P
Sbjct: 420 AMCDQGMMGQARDLFNEMDRNCKLDAAAYSTMIHGAFKSGEKKIAEEFLKDMIDE-GLIP 478

Query: 312 DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFE 356
           D   Y++ I+++  S +  AA ++L +M  +G  PD+  ++ L +
Sbjct: 479 DAVTYSIPINMFAKSGDLAAAERVLKQMTASGFVPDVAVFDSLIQ 523



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 65/276 (23%), Positives = 121/276 (43%), Gaps = 6/276 (2%)

Query: 138 FASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVD 197
           + ++  S     +VK A    D+M + G + +V   N L++++C++G   +A    + + 
Sbjct: 202 YTALIDSLCRHGKVKKAARVMDMMTERGLEPNVVTYNVLINSMCKEGSVREALDLRKNMS 261

Query: 198 GR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVI-EVGWDPDNVPAYDSYLITLLKGC 255
            + ++PD  TY  L+ G     ++  A     EM+  E    PD +  ++S +  L K  
Sbjct: 262 EKGVQPDVVTYNTLITGLSSVLEMDEAMALLEEMMQGETRVRPD-LMTFNSVIHGLCK-I 319

Query: 256 DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHM 315
             + + +     M E GC   +  F L     L    ++ A  +   M    G +PD+  
Sbjct: 320 GWMRQALQVRAMMAENGCRCNLVAFNLLIGGLLRVHKVKKAMELMDEMASS-GLQPDSFT 378

Query: 316 YNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
           Y+++I+ +C   +   A   L EM + G  P+   Y  L + +     + +A  LFNEM 
Sbjct: 379 YSILINGFCKMRQVERAESYLSEMRHQGMEPEPVHYIPLLKAMCDQGMMGQARDLFNEMD 438

Query: 376 KNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIE 411
           +N   L+       +     S +  +A +F K MI+
Sbjct: 439 RNCK-LDAAAYSTMIHGAFKSGEKKIAEEFLKDMID 473



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 70/245 (28%), Positives = 113/245 (46%), Gaps = 9/245 (3%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           ++  ++ +   Y    R +     F+ M   G + DV    +L+ ++CR GK   A + +
Sbjct: 163 NVVVYSCLLHGYCKTGRWESVGKVFEEMSGRGIEPDVVMYTALIDSLCRHGKVKKAARVM 222

Query: 194 RVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
            ++  R ++P+  TY +L+    KE  V  A      M  E G  PD V  Y++ LIT L
Sbjct: 223 DMMTERGLEPNVVTYNVLINSMCKEGSVREALDLRKNMS-EKGVQPD-VVTYNT-LITGL 279

Query: 253 KGCDGIYETVNSLKRMM--ERGCNPG-MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGF 309
                + E +  L+ MM  E    P  MTF  +    C  G  +R A  +  AM+   G 
Sbjct: 280 SSVLEMDEAMALLEEMMQGETRVRPDLMTFNSVIHGLCKIGW-MRQALQVR-AMMAENGC 337

Query: 310 RPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASG 369
           R +   +N++I      ++   AM+L+DEM  +G  PD  TY+IL     K R++  A  
Sbjct: 338 RCNLVAFNLLIGGLLRVHKVKKAMELMDEMASSGLQPDSFTYSILINGFCKMRQVERAES 397

Query: 370 LFNEM 374
             +EM
Sbjct: 398 YLSEM 402


>gi|302142431|emb|CBI19634.3| unnamed protein product [Vitis vinifera]
          Length = 839

 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 79/312 (25%), Positives = 131/312 (41%), Gaps = 46/312 (14%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVL--SLATFASVFSSYVVADRVKDAITTFDV 160
            + L++    K C  D     ++ M++E  L      +  +   Y    ++ DA+   D 
Sbjct: 264 TYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDE 323

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERD 219
           M + G K ++F  NSL++  C+ G+  +A   + R+VD  +KPD+ +Y  LL+G+ +E  
Sbjct: 324 MLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGH 383

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLK---RMMERGCNPG 276
            + A     +M+ E G +P  V  Y+    TLLKG   +    ++L+    MM+RG  P 
Sbjct: 384 TSEAFNLCDKMLQE-GIEP-TVLTYN----TLLKGLCRVGAFDDALQIWHLMMKRGVAPD 437

Query: 277 MTFFKLAFEECLTGQNLRGAEFIWGAMVGR------------------------------ 306
              +    +     +N  GA  +W  ++ R                              
Sbjct: 438 EVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMISGLCKMGKMVEAEEIFD 497

Query: 307 ----IGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGR 362
               +G  PD   Y  +I  YC ++  G A K+   M      P I+ YN L   L K R
Sbjct: 498 KMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREPISPSIEMYNSLISGLFKSR 557

Query: 363 KLWEASGLFNEM 374
           +L E + L  EM
Sbjct: 558 RLVEVTDLLTEM 569



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 93/421 (22%), Positives = 174/421 (41%), Gaps = 24/421 (5%)

Query: 66  SQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFD------- 118
           S + V+ VL+    +P  ++ FF++ + Q N + +  ++  +V +L +  ++D       
Sbjct: 33  SDDIVDAVLRNLRLNPTASLGFFQFVSKQQNFRPNVKSYCKLVHILSRGRMYDETRAYLN 92

Query: 119 -------------AMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYG 165
                         +WD +  + +E   S   F  +   YV     K+A+  FD M + G
Sbjct: 93  QLVDLCKFKDRGNVIWDELVGVYREFAFSPTVFDMILKVYVEKGLTKNALYVFDNMGKCG 152

Query: 166 CKHDVFALNSLLSAICRDGKTIDA-WQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAK 224
               + + NSLL+ + ++G+T  A + + +++   I PD    +I++  + K+  V  A 
Sbjct: 153 RIPSLRSCNSLLNNLVKNGETHTAHYVYQQMIRVGIVPDVFMVSIMVNAFCKDGKVDEAA 212

Query: 225 KTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAF 284
             F + +  +G +P N+  Y S LI        +      LK M E+G +  +  + L  
Sbjct: 213 G-FVKKMENLGVEP-NIVTYHS-LINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLI 269

Query: 285 EECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGA 344
           +       +  AE +   M       PD   Y ++I  YC + +   A++LLDEM+  G 
Sbjct: 270 KGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGL 329

Query: 345 FPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIK 404
             ++   N L     K  ++ EA G+   MV      +  +    +  Y        A  
Sbjct: 330 KTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFN 389

Query: 405 FWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILI 464
               M++        T N L+ GLC +    +A++    M ++G+       S L   L 
Sbjct: 390 LCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKRGVAPDEVGYSTLLDGLF 449

Query: 465 K 465
           K
Sbjct: 450 K 450



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 60/274 (21%), Positives = 106/274 (38%), Gaps = 43/274 (15%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           T+ ++   Y  A  V  A      ME+      +   NSL+S + +  + ++    L  +
Sbjct: 510 TYRTLIDGYCKASNVGQAFKVKGAMEREPISPSIEMYNSLISGLFKSRRLVEVTDLLTEM 569

Query: 197 DGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEM------------------------- 230
             R + P+  TY  L++GW KE  +  A  ++ EM                         
Sbjct: 570 GIRGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMVSGLYRLGRI 629

Query: 231 -----VIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCN----PGMTFFK 281
                +++   D    P ++ +L + ++     Y  +  +   ++  C     P    + 
Sbjct: 630 DEANLLMQKMVDHGFFPDHECFLKSDIR-----YAAIQKIADSLDESCKTFLLPNNIVYN 684

Query: 282 LAFEE-CLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMV 340
           +A    C TG+      F   +M+   GF PD   Y  +I  Y  +     A +L DEM+
Sbjct: 685 IAIAGLCKTGKVDDARRFF--SMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEML 742

Query: 341 YNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
             G  P+I TYN L   L K   +  A  LF+++
Sbjct: 743 RRGLVPNIVTYNALINGLCKSENVDRAQRLFHKL 776


>gi|115482730|ref|NP_001064958.1| Os10g0497300 [Oryza sativa Japonica Group]
 gi|41152691|dbj|BAD08215.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|113639567|dbj|BAF26872.1| Os10g0497300 [Oryza sativa Japonica Group]
 gi|215693996|dbj|BAG89195.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 794

 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 92/379 (24%), Positives = 158/379 (41%), Gaps = 21/379 (5%)

Query: 81  PGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCL-------FDAMWDAIKSMKKENVL 133
           P  AV  +   A    D+ +P      + L+G  C        F A+ + IK   + + +
Sbjct: 69  PAAAVSRYNRMARAGADEVTPNLCTYGI-LIGSCCCAGRLDLGFAALGNVIKKGFRVDAI 127

Query: 134 SLATFASVFSSYVVADRVKDAI-TTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQF 192
           +   F  +        R  DA+      M Q GC  +VF+ N LL  +C + ++ +A + 
Sbjct: 128 A---FTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALEL 184

Query: 193 LRVV---DGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLI 249
           L+++    G   PD  +Y  ++ G+ KE D+  A  T+ EM ++ G  P NV  Y S + 
Sbjct: 185 LQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEM-LDRGILP-NVVTYSSIIA 242

Query: 250 TLLKGCDGIYETVNSLKRMMERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIG 308
            L K    + + +  L  M++ G  P   T+  +    C +GQ      F+    +   G
Sbjct: 243 ALCKA-QAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFL--KKMHSDG 299

Query: 309 FRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEAS 368
             PD   YN ++   C +     A K+ D M   G  P+I TY  L +       L E  
Sbjct: 300 VEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMH 359

Query: 369 GLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGL 428
           GL + MV+N    NH      +  Y        A+  +  M +   +  + T   ++  L
Sbjct: 360 GLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGIL 419

Query: 429 CDMHMLPEAVKYAKGMAEK 447
           C    + +A++Y + M ++
Sbjct: 420 CKSGRVEDAMRYFEQMIDE 438



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 97/421 (23%), Positives = 180/421 (42%), Gaps = 33/421 (7%)

Query: 77  SYSHPGPAVKFFRWSAYQLNDKHSP--YAWNLVVDLLGKN--C-----LFDAMWDAIKSM 127
           S   P  A+ F +      +D   P    +N ++D L KN  C     +FD+M    + +
Sbjct: 281 SSGQPKEAIGFLKKMH---SDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTK--RGL 335

Query: 128 KKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTI 187
           K E    + T+ ++   Y     + +     D+M + G   + +  + L+ A  + GK  
Sbjct: 336 KPE----ITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVD 391

Query: 188 DAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDS 246
            A   F ++    + PD  TY  ++    K   V +A + F +M+ E    P N+  Y+S
Sbjct: 392 QAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDER-LSPGNI-VYNS 449

Query: 247 YLITLLKGCDGIYETVNSLKR----MMERG-CNPGMTFFKLAFEECLTGQNLRGAEFIWG 301
            + +L      I++  +  K     M++RG C   + F  +    C  G+ +  +E ++ 
Sbjct: 450 LIHSLC-----IFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIE-SEKLFD 503

Query: 302 AMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKG 361
            MV RIG +PD   Y+ +I  YC + +   A KLL  MV  G  PD  TYN L     K 
Sbjct: 504 LMV-RIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKI 562

Query: 362 RKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETG 421
            ++ +A  LF EM  +    +       ++    +     A + +  + E+       T 
Sbjct: 563 SRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTY 622

Query: 422 NLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKCKA 481
           N+++ GLC  ++  EA++  + +    +Q+     + +   L+K  +    ++L     A
Sbjct: 623 NIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSA 682

Query: 482 H 482
           +
Sbjct: 683 N 683



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 87/351 (24%), Positives = 148/351 (42%), Gaps = 26/351 (7%)

Query: 88  FRWSAYQLNDKHSPYAWNLVVD-LLGKNCLFDAMWDAIKSMKKENV-----LSLATFASV 141
            R+    ++++ SP   N+V + L+   C+FD  WD  K +  E +     L    F S+
Sbjct: 429 MRYFEQMIDERLSP--GNIVYNSLIHSLCIFDK-WDKAKELILEMLDRGICLDTIFFNSI 485

Query: 142 FSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRI 200
             S+    RV ++   FD+M + G K D+   ++L+   C  GK  +A + L  +V   +
Sbjct: 486 IDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGM 545

Query: 201 KPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYE 260
           KPD  TY  L+ G+ K   + +A   F EM    G  PD +    +Y I L     G+++
Sbjct: 546 KPDCVTYNTLINGYCKISRMEDALVLFREME-SSGVSPDII----TYNIIL----QGLFQ 596

Query: 261 TVNSLKR------MMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTH 314
           T  +         + E G    ++ + +     L   NL          +     + +T 
Sbjct: 597 TRRTAAAKELYVGITESGTQLELSTYNIILHG-LCKNNLTDEALRMFQNLCLTDLQLETR 655

Query: 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
            +N+MI           A  L   +  NG  PD++TY+++ E L++   L E   LF  M
Sbjct: 656 TFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSM 715

Query: 375 VKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLV 425
            +N    N     + VR  +   D   A  +   + E H S  + T +L +
Sbjct: 716 EENGCTANSRMLNSIVRKLLQRGDITRAGTYLFMIDEKHFSLEASTASLFL 766



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 71/307 (23%), Positives = 120/307 (39%), Gaps = 14/307 (4%)

Query: 152 KDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDG---RIKPDNDTYA 208
           +DA   FD + + G    ++ LN  L+ + R        ++ R+       + P+  TY 
Sbjct: 36  EDARHVFDELLRRGRGASIYGLNCALADVARHSPAAAVSRYNRMARAGADEVTPNLCTYG 95

Query: 209 ILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNS---- 264
           IL+        +       G  VI+ G+  D +         LLKG      T ++    
Sbjct: 96  ILIGSCCCAGRLDLGFAALGN-VIKKGFRVDAIA-----FTPLLKGLCADKRTSDAMDIV 149

Query: 265 LKRMMERGCNPGMTFFKLAFEE-CLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLY 323
           L+RM + GC P +  + +  +  C   ++    E +           PD   Y  +I+ +
Sbjct: 150 LRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGF 209

Query: 324 CYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNH 383
               +   A     EM+  G  P++ TY+ +   L K + + +A  +   MVKN  + N 
Sbjct: 210 FKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNC 269

Query: 384 ENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKG 443
               + V  Y  S  P  AI F K M  +       T N L+  LC      EA K    
Sbjct: 270 RTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDS 329

Query: 444 MAEKGIQ 450
           M ++G++
Sbjct: 330 MTKRGLK 336


>gi|413950074|gb|AFW82723.1| hypothetical protein ZEAMMB73_503137 [Zea mays]
          Length = 643

 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 85/328 (25%), Positives = 146/328 (44%), Gaps = 11/328 (3%)

Query: 136 ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-R 194
           A++ ++  +     R+++  +    M   G + +V    +++ A C+ G+   A   L R
Sbjct: 225 ASYNAIVLALCREFRMQEVFSVVSDMVGRGLQPNVITYTTIVDAFCKAGELRMACAILAR 284

Query: 195 VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG 254
           +V     P+  T+  L+ G   +  V +A   +  MV E GW P  V    SY I +   
Sbjct: 285 MVITGCTPNVVTFTALVRGLFDDGRVHDALDMWRWMVAE-GWAPSTV----SYNILIRGL 339

Query: 255 CD-GIYETVNSLKRMMER-GCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD 312
           C  G  +  +S+   ME+ GC P +  +    +      +L GA  IW  M  R G +P+
Sbjct: 340 CSVGDLKGASSILNSMEQHGCFPNVRTYSTLIDGFSKAGDLGGAISIWNDM-SRSGCKPN 398

Query: 313 THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFN 372
             +Y  M+ ++C       A  L+D+M+     P+  T+N L   L   R++  A G+F+
Sbjct: 399 VVVYTNMVDVFCKKLMFNQAKSLIDKMLLENCPPNTVTFNTLIRSLCDCRRVGRALGVFH 458

Query: 373 EMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLS-ETGNLLVAGLCDM 431
           EM ++  V N       +       +   A+     M ++H  +LS  T N +V+GLC  
Sbjct: 459 EMRRHGCVPNGRTYNELIHGLFREGNCGDALHMVTEM-QSHGIELSLVTYNTVVSGLCQT 517

Query: 432 HMLPEAVKYAKGMAEKGIQVTPFALSKL 459
            M  EA+ +   M  +GIQ   F  S +
Sbjct: 518 RMSREAMVFVGKMIVQGIQPNAFTFSAI 545



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 76/331 (22%), Positives = 135/331 (40%), Gaps = 23/331 (6%)

Query: 126 SMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDG 184
           +M+K+ V  ++ T+  +  +    +RV  A    D M + GC  D     +++S +C+  
Sbjct: 149 NMRKDGVHPNVFTYNLLVRALCQNNRVGAARKMLDEMARKGCPPDDVTYATIVSVLCKLD 208

Query: 185 KTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAY 244
           +  +A + L      + P   +Y  ++    +E  +        +MV   G  P NV  Y
Sbjct: 209 RLDEATEVL----AAMPPVAASYNAIVLALCREFRMQEVFSVVSDMVGR-GLQP-NVITY 262

Query: 245 DSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMV 304
            + +    K  + +      L RM+  GC P +  F            +  A  +W  MV
Sbjct: 263 TTIVDAFCKAGE-LRMACAILARMVITGCTPNVVTFTALVRGLFDDGRVHDALDMWRWMV 321

Query: 305 GRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKL 364
              G+ P T  YN++I   C   +   A  +L+ M  +G FP+++TY+ L +   K   L
Sbjct: 322 AE-GWAPSTVSYNILIRGLCSVGDLKGASSILNSMEQHGCFPNVRTYSTLIDGFSKAGDL 380

Query: 365 WEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYV-------AIKFWKYMIENHCSDL 417
             A  ++N+M ++        C+  V VY +  D +        A      M+  +C   
Sbjct: 381 GGAISIWNDMSRS-------GCKPNVVVYTNMVDVFCKKLMFNQAKSLIDKMLLENCPPN 433

Query: 418 SETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448
           + T N L+  LCD   +  A+     M   G
Sbjct: 434 TVTFNTLIRSLCDCRRVGRALGVFHEMRRHG 464



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 72/318 (22%), Positives = 122/318 (38%), Gaps = 7/318 (2%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           ++ TF ++        RV DA+  +  M   G      + N L+  +C  G    A   L
Sbjct: 293 NVVTFTALVRGLFDDGRVHDALDMWRWMVAEGWAPSTVSYNILIRGLCSVGDLKGASSIL 352

Query: 194 RVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
             ++     P+  TY+ L++G+ K  D+  A   + +M    G  P NV  Y + +    
Sbjct: 353 NSMEQHGCFPNVRTYSTLIDGFSKAGDLGGAISIWNDMS-RSGCKP-NVVVYTNMVDVFC 410

Query: 253 KGCDGIYETVNSL-KRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRP 311
           K    ++    SL  +M+   C P    F          + +  A  ++  M  R G  P
Sbjct: 411 KKL--MFNQAKSLIDKMLLENCPPNTVTFNTLIRSLCDCRRVGRALGVFHEM-RRHGCVP 467

Query: 312 DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLF 371
           +   YN +I         G A+ ++ EM  +G    + TYN +   L + R   EA    
Sbjct: 468 NGRTYNELIHGLFREGNCGDALHMVTEMQSHGIELSLVTYNTVVSGLCQTRMSREAMVFV 527

Query: 372 NEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDM 431
            +M+      N     A +  Y    +  +A      M   +C        +L+A LC+ 
Sbjct: 528 GKMIVQGIQPNAFTFSAIIHAYCKEGEVRMAAWMLGAMNVVNCHRNILVYTILMAELCNQ 587

Query: 432 HMLPEAVKYAKGMAEKGI 449
             L +A+ Y   M  +GI
Sbjct: 588 DKLVDAMTYLLKMLYEGI 605



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 60/270 (22%), Positives = 113/270 (41%), Gaps = 27/270 (10%)

Query: 119 AMW-DAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLL 177
           ++W D  +S  K NV+       VF   ++ ++ K  I   D M    C  +    N+L+
Sbjct: 385 SIWNDMSRSGCKPNVVVYTNMVDVFCKKLMFNQAKSLI---DKMLLENCPPNTVTFNTLI 441

Query: 178 SAIC---RDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEV 234
            ++C   R G+ +  +  +R       P+  TY  L+ G  +E +  +A     EM    
Sbjct: 442 RSLCDCRRVGRALGVFHEMR--RHGCVPNGRTYNELIHGLFREGNCGDALHMVTEM---- 495

Query: 235 GWDPDNVPAYDSYLITLLKGCDGIYETVNS------LKRMMERGCNP-GMTFFKLAFEEC 287
                     +  L+T      G+ +T  S      + +M+ +G  P   TF  +    C
Sbjct: 496 -----QSHGIELSLVTYNTVVSGLCQTRMSREAMVFVGKMIVQGIQPNAFTFSAIIHAYC 550

Query: 288 LTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPD 347
             G+ +R A ++ GAM   +    +  +Y ++++  C  ++   AM  L +M+Y G +P+
Sbjct: 551 KEGE-VRMAAWMLGAM-NVVNCHRNILVYTILMAELCNQDKLVDAMTYLLKMLYEGIYPN 608

Query: 348 IQTYNILFEFLVKGRKLWEASGLFNEMVKN 377
             T+N+L   + +     E S     +  N
Sbjct: 609 TVTWNVLVRGVFRNLGCIEPSDFIQHITMN 638



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 44/85 (51%)

Query: 290 GQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQ 349
           G+N+ GA  +    + + G  P+   YN+++   C +N  GAA K+LDEM   G  PD  
Sbjct: 136 GENMVGAVVLVYDNMRKDGVHPNVFTYNLLVRALCQNNRVGAARKMLDEMARKGCPPDDV 195

Query: 350 TYNILFEFLVKGRKLWEASGLFNEM 374
           TY  +   L K  +L EA+ +   M
Sbjct: 196 TYATIVSVLCKLDRLDEATEVLAAM 220


>gi|224125710|ref|XP_002319656.1| predicted protein [Populus trichocarpa]
 gi|222858032|gb|EEE95579.1| predicted protein [Populus trichocarpa]
          Length = 487

 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 88/335 (26%), Positives = 146/335 (43%), Gaps = 48/335 (14%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           +L T+  +  +Y++   + +A+   D M   G + D F  N +   +C++GK   A++F+
Sbjct: 114 TLITYTILIEAYILEGGIDEALKLLDEMLSRGLEPDTFTYNVITRGLCKEGKVDRAFEFV 173

Query: 194 RVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
           R ++ R  KPD  TY ILL     +      +K   E +   G +P NV  Y   + +L 
Sbjct: 174 RTLNSRGCKPDVITYNILLRALLNQGKWDEGEKWMSE-IFSRGCEP-NVVTYSILISSLC 231

Query: 253 KGCDG-IYETVNSLKRMMERG---------------CNPGMTFFKLAFEECLT------- 289
           +  DG I E+VN +K M E+G               C  G     + F +C+        
Sbjct: 232 R--DGKIEESVNLVKVMKEKGLTPDAYCYDPLIAAFCREGKLDMAIEFLDCMICDGFLPD 289

Query: 290 -----------GQNLRG--AEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLL 336
                       +N  G  A  I+G +   +G  P+   YN M+S    S +   A+ ++
Sbjct: 290 IVNYNTIMAALCKNGNGDHAVEIFGKL-DEVGCPPNVSSYNTMLSALWSSGDRYRALGMI 348

Query: 337 DEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNE---NVLNHENCRAAVRVY 393
            +M+  G  PD+ TYN L   L +   + EA GL  +M+      N+++++     +   
Sbjct: 349 SQMLSKGIDPDVITYNSLISCLCRDGMVDEAIGLLADMLSGRFQPNIVSYKTVLLGLCKA 408

Query: 394 MDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGL 428
              DD   AI+    MIEN C     T  LL+ G+
Sbjct: 409 HRIDD---AIEVLAAMIENGCQPNETTYTLLIEGI 440



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 85/352 (24%), Positives = 136/352 (38%), Gaps = 45/352 (12%)

Query: 138 FASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR--V 195
           + +V S +  A+R++ A T  D M++ G   DV   N ++   C  GK   A +     +
Sbjct: 47  YNAVISGFCKANRIESAKTVLDRMKRKGFSPDVVTHNIMIGTFCGKGKIDLALKVFEELL 106

Query: 196 VDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVP------------- 242
            D   KP   TY IL+E +  E  +  A K   EM +  G +PD                
Sbjct: 107 KDNNCKPTLITYTILIEAYILEGGIDEALKLLDEM-LSRGLEPDTFTYNVITRGLCKEGK 165

Query: 243 ---AYDSYLITLLKGCDGIYETVNSLKR-----------------MMERGCNPGMTFFKL 282
              A++       +GC     T N L R                 +  RGC P +  + +
Sbjct: 166 VDRAFEFVRTLNSRGCKPDVITYNILLRALLNQGKWDEGEKWMSEIFSRGCEPNVVTYSI 225

Query: 283 AFEE-CLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVY 341
                C  G+       +   ++   G  PD + Y+ +I+ +C   +   A++ LD M+ 
Sbjct: 226 LISSLCRDGKIEESVNLV--KVMKEKGLTPDAYCYDPLIAAFCREGKLDMAIEFLDCMIC 283

Query: 342 NGAFPDIQTYNILFEFLVK---GRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDD 398
           +G  PDI  YN +   L K   G    E  G  +E+    NV ++    +A+     S D
Sbjct: 284 DGFLPDIVNYNTIMAALCKNGNGDHAVEIFGKLDEVGCPPNVSSYNTMLSAL---WSSGD 340

Query: 399 PYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQ 450
            Y A+     M+         T N L++ LC   M+ EA+     M     Q
Sbjct: 341 RYRALGMISQMLSKGIDPDVITYNSLISCLCRDGMVDEAIGLLADMLSGRFQ 392



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/148 (25%), Positives = 67/148 (45%), Gaps = 13/148 (8%)

Query: 310 RPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASG 369
           +PD   YN +IS +C +N   +A  +LD M   G  PD+ T+NI+        K+  A  
Sbjct: 41  KPDVFAYNAVISGFCKANRIESAKTVLDRMKRKGFSPDVVTHNIMIGTFCGKGKIDLALK 100

Query: 370 LFNEMVKNENVLNHENCRAAVRVYMDSDDPYV-------AIKFWKYMIENHCSDLSETGN 422
           +F E++K+       NC+  +  Y    + Y+       A+K    M+       + T N
Sbjct: 101 VFEELLKD------NNCKPTLITYTILIEAYILEGGIDEALKLLDEMLSRGLEPDTFTYN 154

Query: 423 LLVAGLCDMHMLPEAVKYAKGMAEKGIQ 450
           ++  GLC    +  A ++ + +  +G +
Sbjct: 155 VITRGLCKEGKVDRAFEFVRTLNSRGCK 182



 Score = 45.1 bits (105), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 71/186 (38%), Gaps = 38/186 (20%)

Query: 306 RIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVY-NGAFPDIQTYNILFEFLVKGRKL 364
           R GF PD   +N+MI  +C   +   A+K+ +E++  N   P + TY IL E  +    +
Sbjct: 72  RKGFSPDVVTHNIMIGTFCGKGKIDLALKVFEELLKDNNCKPTLITYTILIEAYILEGGI 131

Query: 365 WEASGLFNEMVKNE----------------------------NVLNHENCRAAV------ 390
            EA  L +EM+                                 LN   C+  V      
Sbjct: 132 DEALKLLDEMLSRGLEPDTFTYNVITRGLCKEGKVDRAFEFVRTLNSRGCKPDVITYNIL 191

Query: 391 -RVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
            R  ++        K+   +    C     T ++L++ LC    + E+V   K M EKG+
Sbjct: 192 LRALLNQGKWDEGEKWMSEIFSRGCEPNVVTYSILISSLCRDGKIEESVNLVKVMKEKGL 251

Query: 450 QVTPFA 455
             TP A
Sbjct: 252 --TPDA 255


>gi|359487106|ref|XP_002274114.2| PREDICTED: pentatricopeptide repeat-containing protein At1g80550,
           mitochondrial-like [Vitis vinifera]
          Length = 571

 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 107/442 (24%), Positives = 175/442 (39%), Gaps = 84/442 (19%)

Query: 52  PTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLL 111
           P    ++          TV Q L    +    A++FF W   Q    H+   +N ++D+L
Sbjct: 163 PLSNPIISPNSTSFDHSTVRQTLSCYANDWKRALEFFDWVQTQCGFNHTTDTYNGMIDIL 222

Query: 112 GKNCLFDAMWDAIKSMKKENVL--SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHD 169
           GK   FD +W  I+ MK + V   +  TF  VF  Y  A  V++A+  +   E++  + D
Sbjct: 223 GKFFEFDLIWVLIQRMKADPVAYPNHVTFRFVFKRYAAAHLVEEAMNAYYRTEEFNLR-D 281

Query: 170 VFALNSLLSAICRDGKTIDAWQ-FLR-VVDGRIKPDNDTYAILLEGWEKERDVANAKKTF 227
             + ++L+ A+C     I+A + FL+   D     D   Y I+L GW K           
Sbjct: 282 ETSYSNLIDALCEYKHVIEAEELFLKESKDLVFNDDVKIYNIILRGWFK----------- 330

Query: 228 GEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFE-E 286
                 +GW                K C   +E       M  RG    +  + +  + +
Sbjct: 331 ------MGW---------------WKKCREFWE------EMDRRGVCKSLYSYSIYMDIQ 363

Query: 287 CLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFP 346
           C +G+  R  +      + + G R D   YN +I     S     ++++  EM   G  P
Sbjct: 364 CKSGKPWRAVKLY--KEMKKKGIRLDVVAYNTVIRAIGLSEGVDFSIRVFREMKEVGCEP 421

Query: 347 DIQTYNILFEFLVKGRKLWEASGLFNEMVKN---ENVLNHE---NC-------------- 386
           ++ TYN + + L +  ++ EA G+F++M +     NV+ +     C              
Sbjct: 422 NVVTYNTIIKLLCENGRIREAYGVFDQMREKGYAPNVITYHCFFGCIEKPKQILRTFDRM 481

Query: 387 -RAAVRVYMDSDDPYVAI--KF------------WKYMIENHCSDLSETGNLLVAGLCDM 431
             + VR  MD+   YV +  KF            WK M E  CS  +   N L+  L   
Sbjct: 482 INSGVRPRMDT---YVMLMKKFGRWGFLRPVFIVWKKMEEQGCSPDACAYNALIDALVQK 538

Query: 432 HMLPEAVKYAKGMAEKGIQVTP 453
            M+  A KY + M  KG+   P
Sbjct: 539 GMVDLARKYEEEMLAKGLSAKP 560


>gi|297849294|ref|XP_002892528.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338370|gb|EFH68787.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 606

 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 76/278 (27%), Positives = 138/278 (49%), Gaps = 16/278 (5%)

Query: 106 LVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYG 165
           L+V LL +N   D  +   + ++++   ++ TF  V ++     ++  A    + M+ YG
Sbjct: 194 LMVALLKQNRSADVEYLYKEMIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYG 253

Query: 166 CKHDVFALNSLLSAICR---DGKTIDAWQFLR-VVDGRIKPDNDTYAILLEGWEKERDVA 221
              +V + N+L+   C+   +GK   A   L+ +V+  + P+  T+ IL++G+ K+ ++ 
Sbjct: 254 YSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEMVENEVSPNLTTFNILIDGFWKDDNLP 313

Query: 222 NAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG-CDG--IYETVNSLKRMMERGCNPGM- 277
            + K F EM+     D D +P   +Y  +L+ G C+G  I E +    +M+  G  P + 
Sbjct: 314 GSLKVFKEML-----DQDVIPNVITY-NSLINGLCNGGKINEAIGMRDKMVSAGVQPNLI 367

Query: 278 TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLD 337
           T+  L    C  G  ++ A  ++ ++ G+ G RP T MYNM+I  YC   +      L +
Sbjct: 368 TYHSLINGFCKNGM-MKEALDMFDSVKGQ-GTRPTTRMYNMLIDAYCKLGKIDDGFALKE 425

Query: 338 EMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
           EM   G  PD+ TYN L   L +   +  A  LF+++ 
Sbjct: 426 EMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLT 463



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 64/288 (22%), Positives = 130/288 (45%), Gaps = 16/288 (5%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVM 161
            +N+++D   K+          K M  ++V+ ++ T+ S+ +      ++ +AI   D M
Sbjct: 298 TFNILIDGFWKDDNLPGSLKVFKEMLDQDVIPNVITYNSLINGLCNGGKINEAIGMRDKM 357

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDV 220
              G + ++   +SL++  C++G   +A      V G+  +P    Y +L++ + K   +
Sbjct: 358 VSAGVQPNLITYHSLINGFCKNGMMKEALDMFDSVKGQGTRPTTRMYNMLIDAYCKLGKI 417

Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGM--- 277
            +      EM  E G  PD V  Y+  +  L +  +     + + K++ ++  N G+   
Sbjct: 418 DDGFALKEEMERE-GIVPD-VGTYNCLIAGLCRNGN-----IEAAKKLFDQLTNKGLPDL 470

Query: 278 -TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLL 336
            TF  L    C  G++ + A  +    + ++G +P    YN+M+  YC      AA  + 
Sbjct: 471 VTFHILMEGYCSRGESRKAAMLL--KEMSKMGLKPRHLTYNIMMKGYCKEGNLKAATNMR 528

Query: 337 DEMVYNGAFP-DIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNH 383
            +M        ++ +YN+L +   +  KL +A+ L NEM++   V N 
Sbjct: 529 TQMEKERRLRMNVASYNVLLQGYSQKGKLEDANMLLNEMLEKGLVPNR 576



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 69/316 (21%), Positives = 131/316 (41%), Gaps = 20/316 (6%)

Query: 144 SYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDA-WQFLRVVDGRIKP 202
           +Y    R +     F     YG K    +   L+ A+ +  ++ D  + +  ++  +I+P
Sbjct: 162 AYANNSRFELGFEAFKRSGYYGYKLSAMSCKPLMVALLKQNRSADVEYLYKEMIRRKIQP 221

Query: 203 DNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYL--ITLLKGCDGIYE 260
           +  T+ +++    K   +  A+    +M +  G+ P NV +Y++ +     L G   +Y+
Sbjct: 222 NVFTFNVVINALCKTGKMNKARDVMEDMKV-YGYSP-NVVSYNTLIDGYCKLGGNGKMYK 279

Query: 261 TVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMI 320
               LK M+E   +P +T F +  +      NL G+  ++  M+ +    P+   YN +I
Sbjct: 280 ADAVLKEMVENEVSPNLTTFNILIDGFWKDDNLPGSLKVFKEMLDQ-DVIPNVITYNSLI 338

Query: 321 SLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENV 380
           +  C   +   A+ + D+MV  G  P++ TY+ L     K   + EA  +F+        
Sbjct: 339 NGLCNGGKINEAIGMRDKMVSAGVQPNLITYHSLINGFCKNGMMKEALDMFDS------- 391

Query: 381 LNHENCRAAVRVYMDSDDPYVAI-------KFWKYMIENHCSDLSETGNLLVAGLCDMHM 433
           +  +  R   R+Y    D Y  +          + M          T N L+AGLC    
Sbjct: 392 VKGQGTRPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGN 451

Query: 434 LPEAVKYAKGMAEKGI 449
           +  A K    +  KG+
Sbjct: 452 IEAAKKLFDQLTNKGL 467



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 61/249 (24%), Positives = 109/249 (43%), Gaps = 12/249 (4%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           +L T+ S+ + +     +K+A+  FD ++  G +      N L+ A C+ GK  D +   
Sbjct: 365 NLITYHSLINGFCKNGMMKEALDMFDSVKGQGTRPTTRMYNMLIDAYCKLGKIDDGFALK 424

Query: 194 RVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
             ++   I PD  TY  L+ G  +  ++  AKK F ++          +P   ++ I L+
Sbjct: 425 EEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLT------NKGLPDLVTFHI-LM 477

Query: 253 KGCDGIYETVNS---LKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGF 309
           +G     E+  +   LK M + G  P    + +  +      NL+ A  +   M      
Sbjct: 478 EGYCSRGESRKAAMLLKEMSKMGLKPRHLTYNIMMKGYCKEGNLKAATNMRTQMEKERRL 537

Query: 310 RPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASG 369
           R +   YN+++  Y    +   A  LL+EM+  G  P+  TY I+ E +V    + +  G
Sbjct: 538 RMNVASYNVLLQGYSQKGKLEDANMLLNEMLEKGLVPNRITYEIVKEEMVDKGFVPDIEG 597

Query: 370 -LFNEMVKN 377
            LFN   K+
Sbjct: 598 HLFNVSTKS 606



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 76/158 (48%), Gaps = 4/158 (2%)

Query: 296 AEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILF 355
            E+++  M+ R   +P+   +N++I+  C + +   A  ++++M   G  P++ +YN L 
Sbjct: 207 VEYLYKEMIRR-KIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGYSPNVVSYNTLI 265

Query: 356 EFLVK---GRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIEN 412
           +   K     K+++A  +  EMV+NE   N       +  +   D+   ++K +K M++ 
Sbjct: 266 DGYCKLGGNGKMYKADAVLKEMVENEVSPNLTTFNILIDGFWKDDNLPGSLKVFKEMLDQ 325

Query: 413 HCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQ 450
                  T N L+ GLC+   + EA+     M   G+Q
Sbjct: 326 DVIPNVITYNSLINGLCNGGKINEAIGMRDKMVSAGVQ 363


>gi|302758676|ref|XP_002962761.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
 gi|300169622|gb|EFJ36224.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
          Length = 707

 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 99/401 (24%), Positives = 159/401 (39%), Gaps = 43/401 (10%)

Query: 104 WNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVME 162
           + ++VD L K    D     ++ M K     S+ T+ ++        RV +A   F  M 
Sbjct: 188 YTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMV 247

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDG-RIKPDNDTYAILLEGWEKERDVA 221
              C  D  A  SL++  C+  +T +A    +VVDG R  P  D Y  L++G+ KE  + 
Sbjct: 248 SKDCTADALAYVSLVNGYCKSSRTKEAQ---KVVDGIRGTPYIDVYNALMDGYCKEGRLD 304

Query: 222 NAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFK 281
                F +M    G  P N+  Y+  +  L K    + E    L+ M   GC P +  + 
Sbjct: 305 EIPNVFEDMACR-GCVP-NIKTYNIVMDGLCKH-GKVDEAFPFLESMHSAGCVPDVVSYN 361

Query: 282 LAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVY 341
           +  +        + A  +   M+ + G  PD   YN +++ +C       A+ +L  M+ 
Sbjct: 362 IIIDGLFKASKPKEARQVLDQMI-QAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIK 420

Query: 342 NGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENV-------------LNHENCRA 388
            G  PD  TYN L   L +  +L +A  L +EM++N  V             L  E C  
Sbjct: 421 AGVDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCVVSACTTYNTIIDRLCKEGCLK 480

Query: 389 AVRVYMDSDDPY---VAIKFWKYMIENHCSD--LSETGNLL---------------VAGL 428
              + MD    +        +   I+  C +  L E  +LL               + GL
Sbjct: 481 QALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSEMDTLRDEVSYTTVIIGL 540

Query: 429 CDMHMLPEAVKYAKGM-AEKGIQVTPFALSKLKQILIKARK 468
           C    L  A K A+ M A KG+ +T    + L     K ++
Sbjct: 541 CKAEQLDRASKLAREMVAVKGLCITSHTFNLLIDAFTKTKR 581



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 89/369 (24%), Positives = 156/369 (42%), Gaps = 15/369 (4%)

Query: 98  KHSPY--AWNLVVDLLGKNCLFDAMWDAIKSMK-KENVLSLATFASVFSSYVVADRVKDA 154
           + +PY   +N ++D   K    D + +  + M  +  V ++ T+  V        +V +A
Sbjct: 282 RGTPYIDVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEA 341

Query: 155 ITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEG 213
               + M   GC  DV + N ++  + +  K  +A Q L +++   I PD  TY  L+  
Sbjct: 342 FPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQ 401

Query: 214 WEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGC 273
           + KE    +A      M I+ G DPDNV  Y++ LI+ L   + + +    +  M+  GC
Sbjct: 402 FCKEERFDDAVGILKNM-IKAGVDPDNV-TYNT-LISGLSQTNRLGDAYELMHEMLRNGC 458

Query: 274 --NPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGA 331
             +   T+  +    C  G  L+ A  +   M G  G   +T  YN+ I   C       
Sbjct: 459 VVSACTTYNTIIDRLCKEG-CLKQALLLMDHMTGH-GVEANTVTYNIFIDRLCKEGRLDE 516

Query: 332 AMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENV-LNHENCRAAV 390
           A  LL EM       D  +Y  +   L K  +L  AS L  EMV  + + +        +
Sbjct: 517 ASSLLSEM---DTLRDEVSYTTVIIGLCKAEQLDRASKLAREMVAVKGLCITSHTFNLLI 573

Query: 391 RVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQ 450
             +  +     A+   + M++  CS    T N+++  LC +  + +A +    MA +GI 
Sbjct: 574 DAFTKTKRLDEALTLLELMVQRGCSPSVITYNMVITCLCKLDKVDKAWELFDEMAVRGIV 633

Query: 451 VTPFALSKL 459
            +  + + L
Sbjct: 634 ASSVSYTVL 642



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 98/243 (40%), Gaps = 5/243 (2%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           T+  +      A +   A      M   G   D    NS++  +C+ GK   A   L V+
Sbjct: 12  TYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSLLAVM 71

Query: 197 DGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
             R  +P   TY  L+ G  K+++V  AK    E V   G+ PD V    S L   L   
Sbjct: 72  AERNCRPSCCTYNTLISGLCKQQNVDRAKTLVDEFV-SSGFVPDVVTY--SILADGLCKR 128

Query: 256 DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHM 315
             I E    +K M   GC P +  +    +          A  +   +V   GF PD   
Sbjct: 129 GRIDEAFELVKEMSGNGCTPNLVTYNTLIDGLCKASKTEKAYELLETLVSS-GFVPDVVT 187

Query: 316 YNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
           Y +++   C       A+K+++ M+  G  P + TY  L E L +  ++ EA  +F EMV
Sbjct: 188 YTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMV 247

Query: 376 KNE 378
             +
Sbjct: 248 SKD 250



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 73/262 (27%), Positives = 108/262 (41%), Gaps = 6/262 (2%)

Query: 199 RIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGI 258
           ++ PD  TY IL++G  K      A +   EMV + G  PD V  ++S +  L K   G 
Sbjct: 5   KVAPDVFTYNILIDGLCKASKTDKASEMLHEMV-DRGVTPDTV-TFNSIMDGLCKA--GK 60

Query: 259 YETVNSLKRMM-ERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYN 317
           +E  +SL  +M ER C P    +          QN+  A+ +    V   GF PD   Y+
Sbjct: 61  FERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKTLVDEFVSS-GFVPDVVTYS 119

Query: 318 MMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKN 377
           ++    C       A +L+ EM  NG  P++ TYN L + L K  K  +A  L   +V +
Sbjct: 120 ILADGLCKRGRIDEAFELVKEMSGNGCTPNLVTYNTLIDGLCKASKTEKAYELLETLVSS 179

Query: 378 ENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEA 437
             V +       V           A+K  + M++  C+    T   L+ GLC    + EA
Sbjct: 180 GFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEA 239

Query: 438 VKYAKGMAEKGIQVTPFALSKL 459
               K M  K       A   L
Sbjct: 240 HHIFKEMVSKDCTADALAYVSL 261



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 88/382 (23%), Positives = 153/382 (40%), Gaps = 25/382 (6%)

Query: 75  KFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLS 134
           KF  +H   AV   R      N + S   +N ++  L K        D  K++  E V S
Sbjct: 60  KFERAHSLLAVMAER------NCRPSCCTYNTLISGLCKQ----QNVDRAKTLVDEFVSS 109

Query: 135 -----LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDA 189
                + T++ +        R+ +A      M   GC  ++   N+L+  +C+  KT  A
Sbjct: 110 GFVPDVVTYSILADGLCKRGRIDEAFELVKEMSGNGCTPNLVTYNTLIDGLCKASKTEKA 169

Query: 190 WQFLR-VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYL 248
           ++ L  +V     PD  TY I+++G  KE  +  A K   E +++ G  P +V  Y + +
Sbjct: 170 YELLETLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMV-EGMLKRGCTP-SVITYTALM 227

Query: 249 ITLLKGCDGIYETVNSLKRMMERGCNP-GMTFFKLAFEECLTGQNLRGAEFIWGAMVGRI 307
             L +    + E  +  K M+ + C    + +  L    C + +     + + G     I
Sbjct: 228 EGLCRT-GRVDEAHHIFKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQKVVDG-----I 281

Query: 308 GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEA 367
              P   +YN ++  YC          + ++M   G  P+I+TYNI+ + L K  K+ EA
Sbjct: 282 RGTPYIDVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEA 341

Query: 368 SGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAG 427
                 M     V +  +    +     +  P  A +    MI+      + T N L+A 
Sbjct: 342 FPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQ 401

Query: 428 LCDMHMLPEAVKYAKGMAEKGI 449
            C      +AV   K M + G+
Sbjct: 402 FCKEERFDDAVGILKNMIKAGV 423



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 64/277 (23%), Positives = 108/277 (38%), Gaps = 15/277 (5%)

Query: 117 FDAMWDAIKSMKKENV-LSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFAL-N 174
           FD     +K+M K  V     T+ ++ S     +R+ DA      M + GC        N
Sbjct: 408 FDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCVVSACTTYN 467

Query: 175 SLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIE 233
           +++  +C++G    A   +  + G  ++ +  TY I ++   KE  +  A     EM   
Sbjct: 468 TIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSEM--- 524

Query: 234 VGWDPDNVPAYDSYLITLLKGCDG-IYETVNSLKRMME--RGCNPGMTFFKLAFEECLTG 290
                D +    SY   ++  C     +  + L R M   +G       F L  +     
Sbjct: 525 -----DTLRDEVSYTTVIIGLCKAEQLDRASKLAREMVAVKGLCITSHTFNLLIDAFTKT 579

Query: 291 QNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQT 350
           + L  A  +   MV R G  P    YNM+I+  C  ++   A +L DEM   G      +
Sbjct: 580 KRLDEALTLLELMVQR-GCSPSVITYNMVITCLCKLDKVDKAWELFDEMAVRGIVASSVS 638

Query: 351 YNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCR 387
           Y +L   L    +  EA  +  EM  ++  ++   CR
Sbjct: 639 YTVLIYGLCGQGRGKEALQVLEEMASSDCEIDDLKCR 675


>gi|413950073|gb|AFW82722.1| hypothetical protein ZEAMMB73_503137 [Zea mays]
          Length = 620

 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 88/338 (26%), Positives = 152/338 (44%), Gaps = 15/338 (4%)

Query: 130 ENVLSLATFASVFSSYVVAD----RVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGK 185
           E + ++   A+ +++ V+A     R+++  +    M   G + +V    +++ A C+ G+
Sbjct: 192 EVLAAMPPVAASYNAIVLALCREFRMQEVFSVVSDMVGRGLQPNVITYTTIVDAFCKAGE 251

Query: 186 TIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAY 244
              A   L R+V     P+  T+  L+ G   +  V +A   +  MV E GW P  V   
Sbjct: 252 LRMACAILARMVITGCTPNVVTFTALVRGLFDDGRVHDALDMWRWMVAE-GWAPSTV--- 307

Query: 245 DSYLITLLKGCD-GIYETVNSLKRMMER-GCNPGMTFFKLAFEECLTGQNLRGAEFIWGA 302
            SY I +   C  G  +  +S+   ME+ GC P +  +    +      +L GA  IW  
Sbjct: 308 -SYNILIRGLCSVGDLKGASSILNSMEQHGCFPNVRTYSTLIDGFSKAGDLGGAISIWND 366

Query: 303 MVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGR 362
           M  R G +P+  +Y  M+ ++C       A  L+D+M+     P+  T+N L   L   R
Sbjct: 367 M-SRSGCKPNVVVYTNMVDVFCKKLMFNQAKSLIDKMLLENCPPNTVTFNTLIRSLCDCR 425

Query: 363 KLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLS-ETG 421
           ++  A G+F+EM ++  V N       +       +   A+     M ++H  +LS  T 
Sbjct: 426 RVGRALGVFHEMRRHGCVPNGRTYNELIHGLFREGNCGDALHMVTEM-QSHGIELSLVTY 484

Query: 422 NLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKL 459
           N +V+GLC   M  EA+ +   M  +GIQ   F  S +
Sbjct: 485 NTVVSGLCQTRMSREAMVFVGKMIVQGIQPNAFTFSAI 522



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 72/307 (23%), Positives = 123/307 (40%), Gaps = 22/307 (7%)

Query: 149 DRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYA 208
           +RV  A    D M + GC  D     +++S +C+  +  +A + L      + P   +Y 
Sbjct: 150 NRVGAARKMLDEMARKGCPPDDVTYATIVSVLCKLDRLDEATEVL----AAMPPVAASYN 205

Query: 209 ILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRM 268
            ++    +E  +        +MV   G  P NV  Y + +    K  + +      L RM
Sbjct: 206 AIVLALCREFRMQEVFSVVSDMVGR-GLQP-NVITYTTIVDAFCKAGE-LRMACAILARM 262

Query: 269 MERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNE 328
           +  GC P +  F            +  A  +W  MV   G+ P T  YN++I   C   +
Sbjct: 263 VITGCTPNVVTFTALVRGLFDDGRVHDALDMWRWMVAE-GWAPSTVSYNILIRGLCSVGD 321

Query: 329 TGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRA 388
              A  +L+ M  +G FP+++TY+ L +   K   L  A  ++N+M ++        C+ 
Sbjct: 322 LKGASSILNSMEQHGCFPNVRTYSTLIDGFSKAGDLGGAISIWNDMSRS-------GCKP 374

Query: 389 AVRVYMDSDDPYV-------AIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYA 441
            V VY +  D +        A      M+  +C   + T N L+  LCD   +  A+   
Sbjct: 375 NVVVYTNMVDVFCKKLMFNQAKSLIDKMLLENCPPNTVTFNTLIRSLCDCRRVGRALGVF 434

Query: 442 KGMAEKG 448
             M   G
Sbjct: 435 HEMRRHG 441



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 72/318 (22%), Positives = 122/318 (38%), Gaps = 7/318 (2%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           ++ TF ++        RV DA+  +  M   G      + N L+  +C  G    A   L
Sbjct: 270 NVVTFTALVRGLFDDGRVHDALDMWRWMVAEGWAPSTVSYNILIRGLCSVGDLKGASSIL 329

Query: 194 RVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
             ++     P+  TY+ L++G+ K  D+  A   + +M    G  P NV  Y + +    
Sbjct: 330 NSMEQHGCFPNVRTYSTLIDGFSKAGDLGGAISIWNDMS-RSGCKP-NVVVYTNMVDVFC 387

Query: 253 KGCDGIYETVNSL-KRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRP 311
           K    ++    SL  +M+   C P    F          + +  A  ++  M  R G  P
Sbjct: 388 K--KLMFNQAKSLIDKMLLENCPPNTVTFNTLIRSLCDCRRVGRALGVFHEMR-RHGCVP 444

Query: 312 DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLF 371
           +   YN +I         G A+ ++ EM  +G    + TYN +   L + R   EA    
Sbjct: 445 NGRTYNELIHGLFREGNCGDALHMVTEMQSHGIELSLVTYNTVVSGLCQTRMSREAMVFV 504

Query: 372 NEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDM 431
            +M+      N     A +  Y    +  +A      M   +C        +L+A LC+ 
Sbjct: 505 GKMIVQGIQPNAFTFSAIIHAYCKEGEVRMAAWMLGAMNVVNCHRNILVYTILMAELCNQ 564

Query: 432 HMLPEAVKYAKGMAEKGI 449
             L +A+ Y   M  +GI
Sbjct: 565 DKLVDAMTYLLKMLYEGI 582



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 60/270 (22%), Positives = 113/270 (41%), Gaps = 27/270 (10%)

Query: 119 AMW-DAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLL 177
           ++W D  +S  K NV+       VF   ++ ++ K  I   D M    C  +    N+L+
Sbjct: 362 SIWNDMSRSGCKPNVVVYTNMVDVFCKKLMFNQAKSLI---DKMLLENCPPNTVTFNTLI 418

Query: 178 SAIC---RDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEV 234
            ++C   R G+ +  +  +R       P+  TY  L+ G  +E +  +A     EM    
Sbjct: 419 RSLCDCRRVGRALGVFHEMR--RHGCVPNGRTYNELIHGLFREGNCGDALHMVTEM---- 472

Query: 235 GWDPDNVPAYDSYLITLLKGCDGIYETVNS------LKRMMERGCNP-GMTFFKLAFEEC 287
                     +  L+T      G+ +T  S      + +M+ +G  P   TF  +    C
Sbjct: 473 -----QSHGIELSLVTYNTVVSGLCQTRMSREAMVFVGKMIVQGIQPNAFTFSAIIHAYC 527

Query: 288 LTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPD 347
             G+ +R A ++ GAM   +    +  +Y ++++  C  ++   AM  L +M+Y G +P+
Sbjct: 528 KEGE-VRMAAWMLGAM-NVVNCHRNILVYTILMAELCNQDKLVDAMTYLLKMLYEGIYPN 585

Query: 348 IQTYNILFEFLVKGRKLWEASGLFNEMVKN 377
             T+N+L   + +     E S     +  N
Sbjct: 586 TVTWNVLVRGVFRNLGCIEPSDFIQHITMN 615


>gi|296087509|emb|CBI34098.3| unnamed protein product [Vitis vinifera]
          Length = 718

 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 79/320 (24%), Positives = 137/320 (42%), Gaps = 5/320 (1%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           ++  ++++   Y    R+++A    D M   G   D+F  N+++S + + GK  +A  +L
Sbjct: 184 NVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYL 243

Query: 194 RVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
             + GR +KPD  T+   + G+ K   +  A K F EM ++ G  P+N P Y + LI   
Sbjct: 244 LEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEM-LDHGLMPNN-PLY-TVLINGH 300

Query: 253 KGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD 312
                + E ++  + +   G  P +          L    ++ A  ++  +  + G  PD
Sbjct: 301 FKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEK-GLVPD 359

Query: 313 THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFN 372
              Y+ +IS +C   E   A +L DEM   G  P+I  YN L + L K   +  A  LF+
Sbjct: 360 VFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFD 419

Query: 373 EMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMH 432
            M +     +       +  Y  S++   A   +  M        S   N LV G C   
Sbjct: 420 GMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEG 479

Query: 433 MLPEAVKYAKGMAEKGIQVT 452
            + +A+   + M +KG   T
Sbjct: 480 DMEKAMNLFREMLQKGFATT 499



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 84/337 (24%), Positives = 143/337 (42%), Gaps = 23/337 (6%)

Query: 150 RVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYA 208
           RV++A+  F  +++ G   DVF  +SL+S  C+ G+   A++    +    I P+   Y 
Sbjct: 340 RVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYN 399

Query: 209 ILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRM 268
            L++G  K  D+  A+K F  M  E G +PD+V  Y + +    K  + + E  +    M
Sbjct: 400 ALVDGLCKSGDIQRARKLFDGMP-EKGLEPDSV-TYSTMIDGYCKS-ENVAEAFSLFHEM 456

Query: 269 MERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNE 328
             +G  P    +      C    ++  A  ++  M+ + GF   T  +N +I  YC S +
Sbjct: 457 PSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQK-GF-ATTLSFNTLIDGYCKSCK 514

Query: 329 TGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLN-----H 383
              A +L  EM+     PD  TY  + ++  K  K+ EA+ LF EM +   +++      
Sbjct: 515 IQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVFALF 574

Query: 384 ENCRA------------AVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDM 431
           E   A             +  +   D+   A K    ++           +LL+  LC  
Sbjct: 575 EKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKR 634

Query: 432 HMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARK 468
             L EA K    M E G++ +  A S L +   +A K
Sbjct: 635 EDLTEASKLLDEMGELGLKPSLAACSTLVRSFHEAGK 671



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/247 (23%), Positives = 115/247 (46%), Gaps = 6/247 (2%)

Query: 138 FASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVV 196
           +  + + +  A  + +A++ F  +   G   DV   ++ +  + ++G+  +A + F  + 
Sbjct: 293 YTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELK 352

Query: 197 DGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD 256
           +  + PD  TY+ L+ G+ K+ +V  A +   EM ++ G  P N+  Y++ +  L K  D
Sbjct: 353 EKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLK-GIAP-NIFIYNALVDGLCKSGD 410

Query: 257 GIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMY 316
            I         M E+G  P    +    +     +N+  A  ++  M  + G +P + +Y
Sbjct: 411 -IQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSK-GVQPHSFVY 468

Query: 317 NMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK 376
           N ++   C   +   AM L  EM+  G F    ++N L +   K  K+ EAS LF EM+ 
Sbjct: 469 NALVHGCCKEGDMEKAMNLFREMLQKG-FATTLSFNTLIDGYCKSCKIQEASQLFQEMIA 527

Query: 377 NENVLNH 383
            + + +H
Sbjct: 528 KQIMPDH 534



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 69/282 (24%), Positives = 119/282 (42%), Gaps = 39/282 (13%)

Query: 102 YAWNLVVDLLGKNC-------LFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDA 154
           + +N +VD L K+        LFD M +  K ++ ++V    T++++   Y  ++ V +A
Sbjct: 396 FIYNALVDGLCKSGDIQRARKLFDGMPE--KGLEPDSV----TYSTMIDGYCKSENVAEA 449

Query: 155 ITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGW 214
            + F  M   G +   F  N+L+   C++G    A    R +  +      ++  L++G+
Sbjct: 450 FSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATTLSFNTLIDGY 509

Query: 215 EKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD-GIYETVNSL-KRMMERG 272
            K   +  A + F EM+ +       +P + +Y   +   C  G  E  N L K M ER 
Sbjct: 510 CKSCKIQEASQLFQEMIAK-----QIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERN 564

Query: 273 CNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAA 332
                 F                   ++  MV + G +PD   Y ++I  +C  +    A
Sbjct: 565 LIVDTVFA------------------LFEKMVAK-GVKPDEVTYGLVIYAHCKEDNLVEA 605

Query: 333 MKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
            KL DE+V  G       +++L   L K   L EAS L +EM
Sbjct: 606 FKLRDEVVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEM 647



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 78/366 (21%), Positives = 144/366 (39%), Gaps = 44/366 (12%)

Query: 139 ASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVD 197
           +++   ++    + + +   DVM   G   ++   N L+  +C+ GK   A + L+ ++ 
Sbjct: 49  SALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMIT 108

Query: 198 GRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSY--LITLLKGC 255
              KP++ T+ +L+EG+ +E ++  A +   EM        + VP+  SY  +I  L  C
Sbjct: 109 LGCKPNSRTFCLLIEGYCREHNMGRALELLDEM-----EKRNLVPSAVSYGAMINGLCHC 163

Query: 256 DGIYETVNSLKRMMERGCNPGMTFFKLAF---------EEC---LTGQNLRGAE---FIW 300
             +      L++M   G  P +  +             EE    L G +  G     F +
Sbjct: 164 KDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCY 223

Query: 301 GAMV--------------------GRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMV 340
            A++                    GR G +PD   +   I  Y  + +   A K  DEM+
Sbjct: 224 NAIISCLSKAGKMEEASTYLLEIQGR-GLKPDAVTFGAFILGYSKTGKMTEAAKYFDEML 282

Query: 341 YNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPY 400
            +G  P+   Y +L     K   L EA  +F  +     + + + C A +   + +    
Sbjct: 283 DHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQ 342

Query: 401 VAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLK 460
            A+K +  + E        T + L++G C    + +A +    M  KGI    F  + L 
Sbjct: 343 EALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALV 402

Query: 461 QILIKA 466
             L K+
Sbjct: 403 DGLCKS 408



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 75/361 (20%), Positives = 140/361 (38%), Gaps = 44/361 (12%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHD--------------------------- 169
           T+  + +    A R+ +A  TF+ M++ G K D                           
Sbjct: 12  TYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVM 71

Query: 170 --------VFALNSLLSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYAILLEGWEKERDV 220
                   +   N L+  +C+ GK   A + L+ ++    KP++ T+ +L+EG+ +E ++
Sbjct: 72  VSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLIEGYCREHNM 131

Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSY--LITLLKGCDGIYETVNSLKRMMERGCNPGMT 278
             A +   EM        + VP+  SY  +I  L  C  +      L++M   G  P + 
Sbjct: 132 GRALELLDEM-----EKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVV 186

Query: 279 FFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDE 338
            +        +   +  A  +   M    G  PD   YN +IS    + +   A   L E
Sbjct: 187 VYSTLIMGYASEGRIEEARRLLDGMSCS-GVAPDIFCYNAIISCLSKAGKMEEASTYLLE 245

Query: 339 MVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDD 398
           +   G  PD  T+        K  K+ EA+  F+EM+ +  + N+      +  +  + +
Sbjct: 246 IQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGN 305

Query: 399 PYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSK 458
              A+  ++++         +T +  + GL     + EA+K    + EKG+    F  S 
Sbjct: 306 LMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSS 365

Query: 459 L 459
           L
Sbjct: 366 L 366



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/215 (23%), Positives = 93/215 (43%), Gaps = 5/215 (2%)

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDA-WQFLRVVDGRIKPDNDTYAILLEGWEKERD 219
           M + G   + +    + + +CR  +  +A   F  +    +KPD +  + L++G+ +E D
Sbjct: 1   MGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGD 60

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTF 279
           +    +   ++++  G  P N+  Y+  +  L K    + +    LK M+  GC P    
Sbjct: 61  IDEVLR-IKDVMVSCGI-PINLITYNVLIHGLCK-FGKMEKAAEILKGMITLGCKPNSRT 117

Query: 280 FKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEM 339
           F L  E      N+  A  +   M  R    P    Y  MI+  C+  +   A KLL++M
Sbjct: 118 FCLLIEGYCREHNMGRALELLDEMEKR-NLVPSAVSYGAMINGLCHCKDLSLANKLLEKM 176

Query: 340 VYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
            ++G  P++  Y+ L        ++ EA  L + M
Sbjct: 177 TFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGM 211



 Score = 41.6 bits (96), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 29/112 (25%), Positives = 48/112 (42%)

Query: 339 MVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDD 398
           M   G  P+  TY I+   L + +++ EA   F EM K     ++  C A +  +M   D
Sbjct: 1   MGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGD 60

Query: 399 PYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQ 450
               ++    M+         T N+L+ GLC    + +A +  KGM   G +
Sbjct: 61  IDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCK 112


>gi|326505340|dbj|BAK03057.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326511084|dbj|BAJ91889.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326518326|dbj|BAJ88192.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326518558|dbj|BAJ88308.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 556

 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 87/386 (22%), Positives = 163/386 (42%), Gaps = 43/386 (11%)

Query: 102 YAWN-LVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDV 160
           Y +N L+  L G+    +A+      +++  V  + T+  +  +       K A+   D 
Sbjct: 153 YTYNTLIRGLCGRGRTDNALAVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAVKLLDE 212

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDG-RIKPDNDTYAILLEGWEKERD 219
           M   GC  D+   N +++ IC++G+  DA +FL+ +     +P+  +Y I+L+G      
Sbjct: 213 MRDKGCAPDIVTYNVVVNGICQEGRVDDAMEFLKSLPSYGCEPNTVSYNIVLKGLCTAER 272

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNP-GMT 278
             +A+K   EM  +    P NV  ++  LI+ L     +   +  L ++ + GC P  ++
Sbjct: 273 WEDAEKLMAEMSRK--GRPPNVVTFN-MLISFLCRRGLVEPAMEILDQIPKYGCTPNSLS 329

Query: 279 FFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDE 338
           +  +    C   +  R   F+   ++   G  PD   YN +++  C   E  AA++LL +
Sbjct: 330 YNPILHAFCKQKKMDRAMAFVE--LMVSSGCYPDIVSYNTLLTALCRGGEVDAAVELLHQ 387

Query: 339 MVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK---NENVLNHEN-----CR--- 387
           +   G  P + +YN + + L K  K  EA  L NEMV      +++ +       CR   
Sbjct: 388 LKDKGCTPVLISYNTVIDGLTKAGKTEEALELLNEMVTKGLQPDIITYSTISSGLCREGR 447

Query: 388 --AAVRVYMDSDD----------------------PYVAIKFWKYMIENHCSDLSETGNL 423
              A++ +    D                       + AI  + YM+ N C     T  +
Sbjct: 448 IEEAIKAFCKVQDMGIRPNTVLYNAILLGLCKRRATHSAIDLFTYMVSNGCMPNESTYTI 507

Query: 424 LVAGLCDMHMLPEAVKYAKGMAEKGI 449
           L+ GL    ++ EA +    +  +G+
Sbjct: 508 LIEGLAYEGLVKEAREMMAELCSRGV 533



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 84/356 (23%), Positives = 150/356 (42%), Gaps = 28/356 (7%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           ++ ++ + Y V  ++ +A      M     + D +  N+L+  +C  G+T +A   L V+
Sbjct: 122 SYNAMVAGYCVTGQLDNARRLVAAMPM---EPDTYTYNTLIRGLCGRGRTDNA---LAVL 175

Query: 197 DGRIK----PDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
           D  ++    PD  TY ILLE   K      A K   EM  + G  PD V    +Y + + 
Sbjct: 176 DDMLRRGCVPDVVTYTILLEATCKRSGYKQAVKLLDEMR-DKGCAPDIV----TYNVVVN 230

Query: 253 KGCD--GIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFR 310
             C    + + +  LK +   GC P    + +  +   T +    AE +   M  R G  
Sbjct: 231 GICQEGRVDDAMEFLKSLPSYGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEM-SRKGRP 289

Query: 311 PDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGL 370
           P+   +NM+IS  C       AM++LD++   G  P+  +YN +     K +K+  A   
Sbjct: 290 PNVVTFNMLISFLCRRGLVEPAMEILDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAF 349

Query: 371 FNEMVKN---ENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAG 427
              MV +    +++++     A+    + D    A++    + +  C+ +  + N ++ G
Sbjct: 350 VELMVSSGCYPDIVSYNTLLTALCRGGEVD---AAVELLHQLKDKGCTPVLISYNTVIDG 406

Query: 428 LCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKK-CKAH 482
           L       EA++    M  KG+Q      S +   L    +E   EE +K  CK  
Sbjct: 407 LTKAGKTEEALELLNEMVTKGLQPDIITYSTISSGLC---REGRIEEAIKAFCKVQ 459



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 56/185 (30%), Positives = 84/185 (45%), Gaps = 22/185 (11%)

Query: 273 CNPG-MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGA 331
           C P  M++  +    C+TGQ L  A  +  AM       PDT+ YN +I   C    T  
Sbjct: 116 CEPDVMSYNAMVAGYCVTGQ-LDNARRLVAAM----PMEPDTYTYNTLIRGLCGRGRTDN 170

Query: 332 AMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM--------VKNENVLNH 383
           A+ +LD+M+  G  PD+ TY IL E   K     +A  L +EM        +   NV+ +
Sbjct: 171 ALAVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAVKLLDEMRDKGCAPDIVTYNVVVN 230

Query: 384 ENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKG 443
             C+   RV    DD   A++F K +    C   + + N+++ GLC      +A K    
Sbjct: 231 GICQEG-RV----DD---AMEFLKSLPSYGCEPNTVSYNIVLKGLCTAERWEDAEKLMAE 282

Query: 444 MAEKG 448
           M+ KG
Sbjct: 283 MSRKG 287


>gi|224030417|gb|ACN34284.1| unknown [Zea mays]
 gi|413950072|gb|AFW82721.1| hypothetical protein ZEAMMB73_503137 [Zea mays]
          Length = 647

 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 84/314 (26%), Positives = 140/314 (44%), Gaps = 11/314 (3%)

Query: 150 RVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYA 208
           R+++  +    M   G + +V    +++ A C+ G+   A   L R+V     P+  T+ 
Sbjct: 243 RMQEVFSVVSDMVGRGLQPNVITYTTIVDAFCKAGELRMACAILARMVITGCTPNVVTFT 302

Query: 209 ILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD-GIYETVNSLKR 267
            L+ G   +  V +A   +  MV E GW P  V    SY I +   C  G  +  +S+  
Sbjct: 303 ALVRGLFDDGRVHDALDMWRWMVAE-GWAPSTV----SYNILIRGLCSVGDLKGASSILN 357

Query: 268 MMER-GCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYS 326
            ME+ GC P +  +    +      +L GA  IW  M  R G +P+  +Y  M+ ++C  
Sbjct: 358 SMEQHGCFPNVRTYSTLIDGFSKAGDLGGAISIWNDM-SRSGCKPNVVVYTNMVDVFCKK 416

Query: 327 NETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENC 386
                A  L+D+M+     P+  T+N L   L   R++  A G+F+EM ++  V N    
Sbjct: 417 LMFNQAKSLIDKMLLENCPPNTVTFNTLIRSLCDCRRVGRALGVFHEMRRHGCVPNGRTY 476

Query: 387 RAAVRVYMDSDDPYVAIKFWKYMIENHCSDLS-ETGNLLVAGLCDMHMLPEAVKYAKGMA 445
              +       +   A+     M ++H  +LS  T N +V+GLC   M  EA+ +   M 
Sbjct: 477 NELIHGLFREGNCGDALHMVTEM-QSHGIELSLVTYNTVVSGLCQTRMSREAMVFVGKMI 535

Query: 446 EKGIQVTPFALSKL 459
            +GIQ   F  S +
Sbjct: 536 VQGIQPNAFTFSAI 549



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 86/378 (22%), Positives = 154/378 (40%), Gaps = 25/378 (6%)

Query: 81  PGPAVKFFRWSAYQLNDKH--SPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLAT 137
           P  A+K F  + + L       P  +N ++D L +  +  A+     +M+K+ V  ++ T
Sbjct: 106 PDRALKTFYRAVHDLGCARPTEPRLYNHLIDALLRENMVGAVVLVYDNMRKDGVHPNVFT 165

Query: 138 FASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVD 197
           +  +  +    +RV  A    D M + GC  D     +++S +C+  +  +A + L    
Sbjct: 166 YNLLVRALCQNNRVGAARKMLDEMARKGCPPDDVTYATIVSVLCKLDRLDEATEVL---- 221

Query: 198 GRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDG 257
             + P   +Y  ++    +E  +        +MV   G  P NV  Y + +    K  + 
Sbjct: 222 AAMPPVAASYNAIVLALCREFRMQEVFSVVSDMVGR-GLQP-NVITYTTIVDAFCKAGE- 278

Query: 258 IYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYN 317
           +      L RM+  GC P +  F            +  A  +W  MV   G+ P T  YN
Sbjct: 279 LRMACAILARMVITGCTPNVVTFTALVRGLFDDGRVHDALDMWRWMVAE-GWAPSTVSYN 337

Query: 318 MMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKN 377
           ++I   C   +   A  +L+ M  +G FP+++TY+ L +   K   L  A  ++N+M ++
Sbjct: 338 ILIRGLCSVGDLKGASSILNSMEQHGCFPNVRTYSTLIDGFSKAGDLGGAISIWNDMSRS 397

Query: 378 ENVLNHENCRAAVRVYMDSDDPYV-------AIKFWKYMIENHCSDLSETGNLLVAGLCD 430
                   C+  V VY +  D +        A      M+  +C   + T N L+  LCD
Sbjct: 398 -------GCKPNVVVYTNMVDVFCKKLMFNQAKSLIDKMLLENCPPNTVTFNTLIRSLCD 450

Query: 431 MHMLPEAVKYAKGMAEKG 448
              +  A+     M   G
Sbjct: 451 CRRVGRALGVFHEMRRHG 468



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 72/318 (22%), Positives = 122/318 (38%), Gaps = 7/318 (2%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           ++ TF ++        RV DA+  +  M   G      + N L+  +C  G    A   L
Sbjct: 297 NVVTFTALVRGLFDDGRVHDALDMWRWMVAEGWAPSTVSYNILIRGLCSVGDLKGASSIL 356

Query: 194 RVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
             ++     P+  TY+ L++G+ K  D+  A   + +M    G  P NV  Y + +    
Sbjct: 357 NSMEQHGCFPNVRTYSTLIDGFSKAGDLGGAISIWNDMS-RSGCKP-NVVVYTNMVDVFC 414

Query: 253 KGCDGIYETVNSL-KRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRP 311
           K    ++    SL  +M+   C P    F          + +  A  ++  M  R G  P
Sbjct: 415 K--KLMFNQAKSLIDKMLLENCPPNTVTFNTLIRSLCDCRRVGRALGVFHEM-RRHGCVP 471

Query: 312 DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLF 371
           +   YN +I         G A+ ++ EM  +G    + TYN +   L + R   EA    
Sbjct: 472 NGRTYNELIHGLFREGNCGDALHMVTEMQSHGIELSLVTYNTVVSGLCQTRMSREAMVFV 531

Query: 372 NEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDM 431
            +M+      N     A +  Y    +  +A      M   +C        +L+A LC+ 
Sbjct: 532 GKMIVQGIQPNAFTFSAIIHAYCKEGEVRMAAWMLGAMNVVNCHRNILVYTILMAELCNQ 591

Query: 432 HMLPEAVKYAKGMAEKGI 449
             L +A+ Y   M  +GI
Sbjct: 592 DKLVDAMTYLLKMLYEGI 609



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 60/270 (22%), Positives = 113/270 (41%), Gaps = 27/270 (10%)

Query: 119 AMW-DAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLL 177
           ++W D  +S  K NV+       VF   ++ ++ K  I   D M    C  +    N+L+
Sbjct: 389 SIWNDMSRSGCKPNVVVYTNMVDVFCKKLMFNQAKSLI---DKMLLENCPPNTVTFNTLI 445

Query: 178 SAIC---RDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEV 234
            ++C   R G+ +  +  +R       P+  TY  L+ G  +E +  +A     EM    
Sbjct: 446 RSLCDCRRVGRALGVFHEMR--RHGCVPNGRTYNELIHGLFREGNCGDALHMVTEM---- 499

Query: 235 GWDPDNVPAYDSYLITLLKGCDGIYETVNS------LKRMMERGCNP-GMTFFKLAFEEC 287
                     +  L+T      G+ +T  S      + +M+ +G  P   TF  +    C
Sbjct: 500 -----QSHGIELSLVTYNTVVSGLCQTRMSREAMVFVGKMIVQGIQPNAFTFSAIIHAYC 554

Query: 288 LTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPD 347
             G+ +R A ++ GAM   +    +  +Y ++++  C  ++   AM  L +M+Y G +P+
Sbjct: 555 KEGE-VRMAAWMLGAM-NVVNCHRNILVYTILMAELCNQDKLVDAMTYLLKMLYEGIYPN 612

Query: 348 IQTYNILFEFLVKGRKLWEASGLFNEMVKN 377
             T+N+L   + +     E S     +  N
Sbjct: 613 TVTWNVLVRGVFRNLGCIEPSDFIQHITMN 642


>gi|297607630|ref|NP_001060305.2| Os07g0621100 [Oryza sativa Japonica Group]
 gi|255677977|dbj|BAF22219.2| Os07g0621100 [Oryza sativa Japonica Group]
          Length = 734

 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 91/352 (25%), Positives = 148/352 (42%), Gaps = 15/352 (4%)

Query: 119 AMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLS 178
           ++ DA+ S++  + +S  T  +        DR    +    +     C+ +  +   L+ 
Sbjct: 66  SLLDALPSVR--DAVSYNTVLTALCRRGHHDRAGALLRAMSLEPHPACRPNAVSYTVLMR 123

Query: 179 AICRDGKTIDAWQFLRVV-DGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWD 237
           A+C D     A   LR +    ++ D  TY  L+ G     +V  A +  GEM  E G +
Sbjct: 124 ALCADRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMC-ESGIE 182

Query: 238 PDNVPAYDSYLITLLKGCDGIYETVNSL-KRMMERGCNPGMTFFKLAFEECLTGQNLRGA 296
           P NV  Y S L    K   G +E V  +   M E+G  P +  +    +        + A
Sbjct: 183 P-NVVVYSSLLQGYCK--SGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKA 239

Query: 297 EFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFE 356
             +   MV R G  P+   YN++I+  C       A+ +L +M   G  PD+ TYN L +
Sbjct: 240 HGVMDMMVRR-GLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIK 298

Query: 357 FLVKGRKLWEASGLFNEMVKNENVL--NHENCRAAVRVYMDSDDPYVAIKFWKYMIENHC 414
            L    ++ EA  L  EMV+ +N++  N     + ++   D      A +    M E  C
Sbjct: 299 GLSDVLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGC 358

Query: 415 SDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKA 466
                T NLL+ GL  +H + +A++    M   G++   F  S    ILIK 
Sbjct: 359 MVNLVTYNLLIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYS----ILIKG 406



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 60/269 (22%), Positives = 121/269 (44%), Gaps = 10/269 (3%)

Query: 118 DAMWDAIKSMKKENVL--SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNS 175
           +AMW   + ++ +N++  ++ TF SV        R++ A     +ME+ GC  ++   N 
Sbjct: 308 EAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCMVNLVTYNL 367

Query: 176 LLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEV 234
           L+  + R  K   A + +  +    ++PD+ TY+IL++G+ K   V  A+     M    
Sbjct: 368 LIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSILIKGFCKMWQVDRAEDLLSTM---- 423

Query: 235 GWDPDNVPAYDSYLITLLKGCD-GIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNL 293
             D    P    Y+  L+  C+ G+ E   +L   M+      +  +           +L
Sbjct: 424 -RDRGIEPELFHYIPLLVAMCEQGMMERARNLFNEMDNNFPLDVVAYSTMIHGACKAGDL 482

Query: 294 RGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNI 353
           + A+ +  ++V   G  PD   Y+++I+++  S +  AA  +L +M  +G  PD+  ++ 
Sbjct: 483 KTAKELLKSIVDE-GLTPDAVTYSIVINMFAKSGDMEAANGVLKQMTASGFLPDVAVFDS 541

Query: 354 LFEFLVKGRKLWEASGLFNEMVKNENVLN 382
           L +      ++ +   L  EM+     L+
Sbjct: 542 LIQGYSTKGEINKVLELIREMITKNIALD 570



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 74/309 (23%), Positives = 126/309 (40%), Gaps = 31/309 (10%)

Query: 138 FASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVD 197
           +  +  S     + K A    D+M + G + +V   N L++ +C++G   +A   L+ + 
Sbjct: 223 YTGLIDSLCKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMS 282

Query: 198 GR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD 256
            + + PD  TY  L++G     ++  A     EMV        NV  ++S +  L   CD
Sbjct: 283 EKGVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQGL---CD 339

Query: 257 -GIYETVNSLKRMMER-GCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTH 314
            G       ++ MME  GC   +  + L     L    +R A  +   M   +G  PD+ 
Sbjct: 340 IGRMRQAFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMTS-LGLEPDSF 398

Query: 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
            Y+++I  +C   +   A  LL  M   G  P++  Y  L   + +   +  A  LFNE 
Sbjct: 399 TYSILIKGFCKMWQVDRAEDLLSTMRDRGIEPELFHYIPLLVAMCEQGMMERARNLFNE- 457

Query: 375 VKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHC--SDLSETGNLLVAGLCDMH 432
                              MD++ P   + +   MI   C   DL +T   L+  + D  
Sbjct: 458 -------------------MDNNFPLDVVAY-STMIHGACKAGDL-KTAKELLKSIVDEG 496

Query: 433 MLPEAVKYA 441
           + P+AV Y+
Sbjct: 497 LTPDAVTYS 505


>gi|356499327|ref|XP_003518493.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Glycine max]
          Length = 725

 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 76/276 (27%), Positives = 132/276 (47%), Gaps = 8/276 (2%)

Query: 102 YAWNLVVD-LLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDV 160
           Y +N+++D L+ K  L  A+    + + K    ++ T+  + + +    R+++A    + 
Sbjct: 378 YTFNIMIDGLVKKGYLVSALELLNEMVAKRFEPNVITYTILINGFCKQGRLEEAAEIVNS 437

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERD 219
           M   G   +    N L+ A+C+DG   +A Q    + G+  KPD  T+  L+ G  K   
Sbjct: 438 MSAKGLSLNTVGYNCLICALCKDGNIEEALQLFGEMSGKGCKPDIYTFNSLINGLCKNHK 497

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCN-PGMT 278
           +  A   + +M +E G   + V  Y++ +   L   D I +    +  M+ RGC    +T
Sbjct: 498 MEEALSLYHDMFLE-GVIANTV-TYNTLVHAFLMR-DSIQQAFKLVDEMLFRGCPLDNIT 554

Query: 279 FFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDE 338
           +  L    C TG   +G   ++  M+G+ G  P     N++IS  C + +   A+K L +
Sbjct: 555 YNGLIKALCKTGAVEKGLG-LFEEMLGK-GIFPTIISCNILISGLCRTGKVNDALKFLQD 612

Query: 339 MVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
           M++ G  PDI TYN L   L K   + EAS LFN++
Sbjct: 613 MIHRGLTPDIVTYNSLINGLCKMGHVQEASNLFNKL 648



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 79/316 (25%), Positives = 136/316 (43%), Gaps = 8/316 (2%)

Query: 138 FASVFSSYVVADRVKDAI-TTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RV 195
           + ++ S YV + R ++A    ++ M   G + D +  N ++  + + G  + A + L  +
Sbjct: 344 YNTLISGYVASGRFEEAKDLLYNNMVIAGYEPDAYTFNIMIDGLVKKGYLVSALELLNEM 403

Query: 196 VDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
           V  R +P+  TY IL+ G+ K+  +  A +    M  + G   + V  Y+  +  L K  
Sbjct: 404 VAKRFEPNVITYTILINGFCKQGRLEEAAEIVNSMSAK-GLSLNTV-GYNCLICALCK-- 459

Query: 256 DG-IYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTH 314
           DG I E +     M  +GC P +  F            +  A  ++  M    G   +T 
Sbjct: 460 DGNIEEALQLFGEMSGKGCKPDIYTFNSLINGLCKNHKMEEALSLYHDMFLE-GVIANTV 518

Query: 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
            YN ++  +   +    A KL+DEM++ G   D  TYN L + L K   + +  GLF EM
Sbjct: 519 TYNTLVHAFLMRDSIQQAFKLVDEMLFRGCPLDNITYNGLIKALCKTGAVEKGLGLFEEM 578

Query: 375 VKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHML 434
           +         +C   +     +     A+KF + MI    +    T N L+ GLC M  +
Sbjct: 579 LGKGIFPTIISCNILISGLCRTGKVNDALKFLQDMIHRGLTPDIVTYNSLINGLCKMGHV 638

Query: 435 PEAVKYAKGMAEKGIQ 450
            EA      +  +GI+
Sbjct: 639 QEASNLFNKLQSEGIR 654



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 83/381 (21%), Positives = 152/381 (39%), Gaps = 29/381 (7%)

Query: 81  PGPAVKFF--RWSAYQLNDKHSPYAWNLVVDLL--------GKNCLFDAMWDAIKSMKKE 130
           PG A +     W  Y  +     Y  N+V+D+L          N  +D +   +      
Sbjct: 150 PGQATRLLLDMWGVYSCDPTFKSY--NVVLDILVDGDCPRVAPNVFYDMLSRGVSP---- 203

Query: 131 NVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAW 190
              ++ TF  V  +  +   V  A +    M ++GC  +     +L+ A+C + +  +A 
Sbjct: 204 ---TVYTFGVVMKALCMVSEVDSACSLLRDMAKHGCVPNSVIYQTLIHALCENNRVSEAL 260

Query: 191 QFLR-VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLI 249
           Q L  +     +PD  T+  ++ G  +   +  A K    M++  G+  D +  Y   + 
Sbjct: 261 QLLEDMFLMCCEPDVQTFNDVIHGLCRAGRIHEAAKLLDRMLLR-GFSTDAL-TYGYLMH 318

Query: 250 TLLKGCDGIYETVNSLKRMMERGCNPGMTFFK-LAFEECLTGQNLRGAEFIWGAMVGRIG 308
            L +        V+  + ++ +  NP    +  L      +G+     + ++  MV   G
Sbjct: 319 GLCR-----MGQVDEARALLNKIPNPNTVLYNTLISGYVASGRFEEAKDLLYNNMV-IAG 372

Query: 309 FRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEAS 368
           + PD + +N+MI          +A++LL+EMV     P++ TY IL     K  +L EA+
Sbjct: 373 YEPDAYTFNIMIDGLVKKGYLVSALELLNEMVAKRFEPNVITYTILINGFCKQGRLEEAA 432

Query: 369 GLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGL 428
            + N M      LN       +       +   A++ +  M    C     T N L+ GL
Sbjct: 433 EIVNSMSAKGLSLNTVGYNCLICALCKDGNIEEALQLFGEMSGKGCKPDIYTFNSLINGL 492

Query: 429 CDMHMLPEAVKYAKGMAEKGI 449
           C  H + EA+     M  +G+
Sbjct: 493 CKNHKMEEALSLYHDMFLEGV 513



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 80/333 (24%), Positives = 127/333 (38%), Gaps = 8/333 (2%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           TF  V      A R+ +A    D M   G   D      L+  +CR G+  +A   L  +
Sbjct: 277 TFNDVIHGLCRAGRIHEAAKLLDRMLLRGFSTDALTYGYLMHGLCRMGQVDEARALLNKI 336

Query: 197 DGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYD-SYLITLLKGC 255
                P+   Y  L+ G+        AK      ++  G++PD   AY  + +I  L   
Sbjct: 337 P---NPNTVLYNTLISGYVASGRFEEAKDLLYNNMVIAGYEPD---AYTFNIMIDGLVKK 390

Query: 256 DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHM 315
             +   +  L  M+ +   P +  + +          L  A  I  +M  + G   +T  
Sbjct: 391 GYLVSALELLNEMVAKRFEPNVITYTILINGFCKQGRLEEAAEIVNSMSAK-GLSLNTVG 449

Query: 316 YNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
           YN +I   C       A++L  EM   G  PDI T+N L   L K  K+ EA  L+++M 
Sbjct: 450 YNCLICALCKDGNIEEALQLFGEMSGKGCKPDIYTFNSLINGLCKNHKMEEALSLYHDMF 509

Query: 376 KNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLP 435
               + N       V  ++  D    A K    M+   C   + T N L+  LC    + 
Sbjct: 510 LEGVIANTVTYNTLVHAFLMRDSIQQAFKLVDEMLFRGCPLDNITYNGLIKALCKTGAVE 569

Query: 436 EAVKYAKGMAEKGIQVTPFALSKLKQILIKARK 468
           + +   + M  KGI  T  + + L   L +  K
Sbjct: 570 KGLGLFEEMLGKGIFPTIISCNILISGLCRTGK 602



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 61/294 (20%), Positives = 119/294 (40%), Gaps = 39/294 (13%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASVFSSYVVADRVKDAITTFDVM 161
            + ++++   K    +   + + SM  + + L+   +  +  +      +++A+  F  M
Sbjct: 414 TYTILINGFCKQGRLEEAAEIVNSMSAKGLSLNTVGYNCLICALCKDGNIEEALQLFGEM 473

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR--VVDGRIKPDNDTYAILLEGWEKERD 219
              GCK D++  NSL++ +C++ K  +A        ++G I  +  TY  L+  +     
Sbjct: 474 SGKGCKPDIYTFNSLINGLCKNHKMEEALSLYHDMFLEGVIA-NTVTYNTLVHAFLMRDS 532

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC--------------DGIYETVNSL 265
           +  A K   EM+   G   DN+  Y+  +  L K                 GI+ T+ S 
Sbjct: 533 IQQAFKLVDEMLFR-GCPLDNI-TYNGLIKALCKTGAVEKGLGLFEEMLGKGIFPTIISC 590

Query: 266 KRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRI------------------ 307
             ++   C  G     L F + +  + L      + +++  +                  
Sbjct: 591 NILISGLCRTGKVNDALKFLQDMIHRGLTPDIVTYNSLINGLCKMGHVQEASNLFNKLQS 650

Query: 308 -GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVK 360
            G RPD   YN +IS +C+      A  LL + V +G  P+  T++IL  ++VK
Sbjct: 651 EGIRPDAITYNTLISRHCHEGMFNDACLLLYKGVDSGFIPNEVTWSILINYIVK 704


>gi|358346916|ref|XP_003637510.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503445|gb|AES84648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 718

 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 86/333 (25%), Positives = 149/333 (44%), Gaps = 23/333 (6%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQF-LRV 195
           TF ++   ++    +  A+     M  YGC     ++  L++  C++G+  +A +F L V
Sbjct: 195 TFTTLMQGFIEEGDLNGALKMKKQMLGYGCLLTNVSVKVLVNGFCKEGRVEEALRFVLEV 254

Query: 196 VDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
            +    PD  T+  L+ G+ +  +V +A     + +IE G+DPD V  Y+S +  + K  
Sbjct: 255 SEEGFSPDQVTFNSLVNGFCRIGNVNDALDIV-DFMIEKGFDPD-VYTYNSLISGMCK-- 310

Query: 256 DGIYE-TVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTH 314
            G +E  +  L++M+ R C+P    +            +  A  +   +V + G  PD  
Sbjct: 311 LGEFEKAIEILQQMILRECSPNTVTYNTLISALCKENEIEAATDLARILVSK-GLLPDVC 369

Query: 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
            +N +I   C S     AM++ +EM   G  PD  TY+IL + L   R+L EA  L  EM
Sbjct: 370 TFNTLIQGLCLSKNQDIAMEMFEEMKNKGCKPDEFTYSILIDSLCYERRLKEALMLLKEM 429

Query: 375 -----VKNE---NVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVA 426
                 +N    N L    C++  R   D+++ +  ++          S  S T N L+ 
Sbjct: 430 ESSGCARNAVVYNTLIDGLCKS--RRIEDAEEIFDQMELLGV------SRSSVTYNTLID 481

Query: 427 GLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKL 459
           GLC    + EA +    M  +G++   F  + L
Sbjct: 482 GLCKNKRVEEASQLMDQMIMEGLKPDKFTYNSL 514



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 88/350 (25%), Positives = 151/350 (43%), Gaps = 13/350 (3%)

Query: 136 ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRV 195
            TF S+ + +     V DA+   D M + G   DV+  NSL+S +C+ G+   A + L+ 
Sbjct: 264 VTFNSLVNGFCRIGNVNDALDIVDFMIEKGFDPDVYTYNSLISGMCKLGEFEKAIEILQQ 323

Query: 196 VDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYL--ITLL 252
           +  R   P+  TY  L+    KE ++  A      +++  G  PD V  +++ +  + L 
Sbjct: 324 MILRECSPNTVTYNTLISALCKENEI-EAATDLARILVSKGLLPD-VCTFNTLIQGLCLS 381

Query: 253 KGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD 312
           K  D   E    +K    +GC P    + +  +     + L+ A  +   M    G   +
Sbjct: 382 KNQDIAMEMFEEMKN---KGCKPDEFTYSILIDSLCYERRLKEALMLLKEMESS-GCARN 437

Query: 313 THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFN 372
             +YN +I   C S     A ++ D+M   G      TYN L + L K +++ EAS L +
Sbjct: 438 AVVYNTLIDGLCKSRRIEDAEEIFDQMELLGVSRSSVTYNTLIDGLCKNKRVEEASQLMD 497

Query: 373 EMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMH 432
           +M+      +     + +  +    D   A    + M  N C     T   L+ GLC   
Sbjct: 498 QMIMEGLKPDKFTYNSLLTYFCRVGDIEKAGDIVQTMASNGCEPDIFTYGTLIGGLCRAG 557

Query: 433 MLPEAVKYAKGMAEKGIQVTPFALSKLKQILI--KARKEA--VYEELLKK 478
            +  A K  + +  KGI +TP A + + Q L   K  KE   ++ E+++K
Sbjct: 558 RVDVASKLLRSVQMKGIVLTPHAYNPVIQALFMRKRTKEGMRLFREMMEK 607



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 74/350 (21%), Positives = 144/350 (41%), Gaps = 42/350 (12%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVM 161
            +N ++  L K    +A  D  + +  + +L  + TF ++     ++     A+  F+ M
Sbjct: 335 TYNTLISALCKENEIEAATDLARILVSKGLLPDVCTFNTLIQGLCLSKNQDIAMEMFEEM 394

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDT-YAILLEGWEKERDV 220
           +  GCK D F  + L+ ++C + +  +A   L+ ++      N   Y  L++G  K R +
Sbjct: 395 KNKGCKPDEFTYSILIDSLCYERRLKEALMLLKEMESSGCARNAVVYNTLIDGLCKSRRI 454

Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFF 280
            +A++ F +M + +G    +V  Y++ +       DG+ +     KR+ E          
Sbjct: 455 EDAEEIFDQMEL-LGVSRSSV-TYNTLI-------DGLCKN----KRVEE---------- 491

Query: 281 KLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMV 340
                          A  +   M+   G +PD   YN +++ +C   +   A  ++  M 
Sbjct: 492 ---------------ASQLMDQMIME-GLKPDKFTYNSLLTYFCRVGDIEKAGDIVQTMA 535

Query: 341 YNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPY 400
            NG  PDI TY  L   L +  ++  AS L   +     VL        ++         
Sbjct: 536 SNGCEPDIFTYGTLIGGLCRAGRVDVASKLLRSVQMKGIVLTPHAYNPVIQALFMRKRTK 595

Query: 401 VAIKFWKYMIENHCSDLSETGNLLVAGLCDMHM-LPEAVKYAKGMAEKGI 449
             ++ ++ M+E      + T  ++  GLC+    + EA+ +   M EKGI
Sbjct: 596 EGMRLFREMMEKSDPPDALTHKIVFRGLCNGGGPIQEAIDFTVEMLEKGI 645



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 88/393 (22%), Positives = 158/393 (40%), Gaps = 23/393 (5%)

Query: 99  HSPYAWNLVVDL-LGKNCLFDAMWDAIKSMKKENVLSLAT-FASVFSSYVVADRVKDAIT 156
           H P   N  + L L ++  FD++   +K +K    +  AT FA++  S+     +++ + 
Sbjct: 52  HHPLPPNETLLLQLTQSSSFDSITTLLKQLKSSGSIPNATTFATLIQSFTNFHEIENLLK 111

Query: 157 TFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL--RVVDGRIKPDNDTYAILLEGW 214
             +   + G K D    N  L+A+  D K +   + L  ++V+  I  D  T+ +L++  
Sbjct: 112 ILE--NELGFKPDTNFYNIALNALVEDNK-LKLVEMLHSKMVNEGIVLDVSTFNVLIKAL 168

Query: 215 EKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC---DGIYETVNSLKRMMER 271
            K   +  A     EM    G  PD +        TL++G      +   +   K+M+  
Sbjct: 169 CKAHQLRPAILMLEEMA-NHGLKPDEIT-----FTTLMQGFIEEGDLNGALKMKKQMLGY 222

Query: 272 GC---NPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNE 328
           GC   N  +      F  C  G+      F+    V   GF PD   +N +++ +C    
Sbjct: 223 GCLLTNVSVKVLVNGF--CKEGRVEEALRFVLE--VSEEGFSPDQVTFNSLVNGFCRIGN 278

Query: 329 TGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRA 388
              A+ ++D M+  G  PD+ TYN L   + K  +  +A  +  +M+  E   N      
Sbjct: 279 VNDALDIVDFMIEKGFDPDVYTYNSLISGMCKLGEFEKAIEILQQMILRECSPNTVTYNT 338

Query: 389 AVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448
            +      ++   A    + ++         T N L+ GLC       A++  + M  KG
Sbjct: 339 LISALCKENEIEAATDLARILVSKGLLPDVCTFNTLIQGLCLSKNQDIAMEMFEEMKNKG 398

Query: 449 IQVTPFALSKLKQILIKARKEAVYEELLKKCKA 481
            +   F  S L   L   R+      LLK+ ++
Sbjct: 399 CKPDEFTYSILIDSLCYERRLKEALMLLKEMES 431


>gi|359482689|ref|XP_003632809.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g52620-like [Vitis vinifera]
          Length = 879

 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 82/332 (24%), Positives = 153/332 (46%), Gaps = 25/332 (7%)

Query: 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL- 193
           L T+ ++    VVA  V  A+T  + M + G   D    N L+S +C+  K   A   L 
Sbjct: 414 LVTYGALVHGLVVAGEVDVALTIREKMLERGVFPDAGIYNILMSGLCKKFKLPAAKLLLA 473

Query: 194 RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLK 253
            ++D  + PD   YA L++G+ +  ++  A+K F E+ IE G +P  +  Y++    ++K
Sbjct: 474 EMLDQSVLPDAFVYATLVDGFIRNGNLDEARKLF-ELTIEKGMNP-GIVGYNA----MIK 527

Query: 254 G-C--DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFR 310
           G C    + + +  + RM +R   P    +    +  +   +L GA+ ++  MV ++  +
Sbjct: 528 GYCKFGMMKDAMACINRMKKRHLAPDEFTYSTVIDGYVKQHDLDGAQKMFREMV-KMKCK 586

Query: 311 PDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGL 370
           P+   Y  +I+ +C   +   ++K+  EM   G  P++ TY+IL     K  KL +A+  
Sbjct: 587 PNVVTYTSLINGFCRKGDLHRSLKIFREMQACGLVPNVVTYSILIGSFCKEAKLIDAASF 646

Query: 371 FNEMVKNE--------NVLNHENCRAAVRVYMDSDDPY------VAIKFWKYMIENHCSD 416
           F EM+ N+        N L +   +   R   +  + +      + + F+  MI +  + 
Sbjct: 647 FEEMLMNKCVPNDVTFNYLVNGFSKNGTRAISEKGNEFQENKQSMFLNFFGRMISDGWAP 706

Query: 417 LSETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448
            S   N ++  LC   M   A++ +  M  KG
Sbjct: 707 RSAAYNSILICLCQYGMFRTALQLSNKMTSKG 738



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 80/332 (24%), Positives = 135/332 (40%), Gaps = 10/332 (3%)

Query: 154 AITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLE 212
           A+ T + M + GCK D+   N+L+S  CRDGK  +A Q L    G+ + P+  +Y  L+ 
Sbjct: 328 AVETIEGMIECGCKPDIVTYNTLISGSCRDGKVSEADQLLEQALGKGLMPNKFSYTPLIH 387

Query: 213 GWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERG 272
            + K+     A     EM  E G  PD V  Y + +  L+   + +   +   ++M+ERG
Sbjct: 388 AYCKQGGYDRASNWLIEMT-ERGHKPDLV-TYGALVHGLVVAGE-VDVALTIREKMLERG 444

Query: 273 CNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAA 332
             P    + +          L  A+ +   M+ +    PD  +Y  ++  +  +     A
Sbjct: 445 VFPDAGIYNILMSGLCKKFKLPAAKLLLAEMLDQ-SVLPDAFVYATLVDGFIRNGNLDEA 503

Query: 333 MKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRV 392
            KL +  +  G  P I  YN + +   K   + +A    N M K     +       +  
Sbjct: 504 RKLFELTIEKGMNPGIVGYNAMIKGYCKFGMMKDAMACINRMKKRHLAPDEFTYSTVIDG 563

Query: 393 YMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVT 452
           Y+   D   A K ++ M++  C     T   L+ G C    L  ++K  + M   G+   
Sbjct: 564 YVKQHDLDGAQKMFREMVKMKCKPNVVTYTSLINGFCRKGDLHRSLKIFREMQACGLVPN 623

Query: 453 PFALSKLKQILIKARK----EAVYEE-LLKKC 479
               S L     K  K     + +EE L+ KC
Sbjct: 624 VVTYSILIGSFCKEAKLIDAASFFEEMLMNKC 655



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 89/378 (23%), Positives = 159/378 (42%), Gaps = 20/378 (5%)

Query: 84  AVKFFRW-SAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASV 141
            +KFF W S  Q +   + +A++ ++ LL ++ +F  M   +++M+ E +  +    + V
Sbjct: 76  GLKFFDWVSRGQYSGPINGFAYSSLLKLLARSRVFSEMEVVLENMRVEEMSPTREAMSIV 135

Query: 142 FSSYVVADRVKDAITTFD-VMEQYGCKHDVFALNSLLSAICRDGKTIDAWQF---LRVVD 197
             +Y  +  V+ A+  +  V++ Y    DV A NSLL+ + + G+   A +    +  +D
Sbjct: 136 IQAYSDSGLVEKALELYYFVLKTYTYFPDVIACNSLLNMLVKLGRIEIARKLYDEMLEID 195

Query: 198 GRIKP--DNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG- 254
           G      DN +  I+++G  KE  +   +K     +IE  W    +P    Y  TL+ G 
Sbjct: 196 GAGDRCVDNYSTCIMVKGLCKEGKLEEGRK-----LIEDRWGQGCIPNIIFY-NTLIDGY 249

Query: 255 CD-GIYETVNSL-KRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD 312
           C  G  E  N L   +  +G  P +  +           + +  + +   M  R G   +
Sbjct: 250 CKKGDMEMANGLFIELKLKGFLPTVETYGAIINGFCKKGDFKAIDRLLMEMNSR-GLTVN 308

Query: 313 THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFN 372
             +YN +I           A++ ++ M+  G  PDI TYN L     +  K+ EA  L  
Sbjct: 309 VQVYNTIIDARYKHGHIVKAVETIEGMIECGCKPDIVTYNTLISGSCRDGKVSEADQLLE 368

Query: 373 EMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIE-NHCSDLSETGNLLVAGLCDM 431
           + +    + N  +    +  Y        A  +   M E  H  DL   G  LV GL   
Sbjct: 369 QALGKGLMPNKFSYTPLIHAYCKQGGYDRASNWLIEMTERGHKPDLVTYGA-LVHGLVVA 427

Query: 432 HMLPEAVKYAKGMAEKGI 449
             +  A+   + M E+G+
Sbjct: 428 GEVDVALTIREKMLERGV 445



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 62/259 (23%), Positives = 110/259 (42%), Gaps = 32/259 (12%)

Query: 115 CLFDAMWDAIKSMKKENVLSLA----TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDV 170
           C F  M DA+  + +     LA    T+++V   YV    +  A   F  M +  CK +V
Sbjct: 530 CKFGMMKDAMACINRMKKRHLAPDEFTYSTVIDGYVKQHDLDGAQKMFREMVKMKCKPNV 589

Query: 171 FALNSLLSAICRDGKTIDAWQFLRVVDG-RIKPDNDTYAILLEGWEKERDVANAKKTFGE 229
               SL++  CR G    + +  R +    + P+  TY+IL+  + KE  + +A   F E
Sbjct: 590 VTYTSLINGFCRKGDLHRSLKIFREMQACGLVPNVVTYSILIGSFCKEAKLIDAASFFEE 649

Query: 230 MVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLT 289
           M++     P++V    +YL+           + N  + + E+G           F+E   
Sbjct: 650 MLMN-KCVPNDVTF--NYLVNGF--------SKNGTRAISEKGNE---------FQENKQ 689

Query: 290 GQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQ 349
              L      +G M+   G+ P +  YN ++   C       A++L ++M   G  PD  
Sbjct: 690 SMFLN----FFGRMISD-GWAPRSAAYNSILICLCQYGMFRTALQLSNKMTSKGCIPDSV 744

Query: 350 TY-NILFEFLVKGR-KLWE 366
           ++  +L    ++GR K W+
Sbjct: 745 SFVALLHGVCLEGRSKEWK 763


>gi|356513749|ref|XP_003525573.1| PREDICTED: pentatricopeptide repeat-containing protein At2g26790,
           mitochondrial-like [Glycine max]
          Length = 819

 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 99/415 (23%), Positives = 183/415 (44%), Gaps = 56/415 (13%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIK---SMKKENV-LSLATFASVFSSYVVADRVKDAITTF 158
           A+N+V D L   C+   + DA++    MK + + L +  + ++ + Y +   +  A   F
Sbjct: 407 AYNIVFDAL---CMLGKVEDAVEMVEEMKSKRLGLDVKHYTTLINGYCLQGDLVTAFNMF 463

Query: 159 DVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKE 217
             M++ G K D+   N L + + R+G   +  + L  ++ + +KP++ T+ +++EG    
Sbjct: 464 KEMKEKGLKPDIVTYNVLAAGLSRNGHARETVKLLDFMESQGMKPNSTTHKMIIEGLCSG 523

Query: 218 RDVANAKKTFGEMV---IEV------GWDPDNV--PAYDSYLITLLKG------------ 254
             V  A+  F  +    IE+      G+   ++   +Y+ +L  L +G            
Sbjct: 524 GKVLEAEVYFNSLEDKNIEIYSAMVNGYCETDLVKKSYEVFLKLLNQGDMAKKASCFKLL 583

Query: 255 -----CDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGF 309
                   I + V  L RM+     P    +           +++ A  ++   V R GF
Sbjct: 584 SKLCMTGDIEKAVKLLDRMLLSNVEPSKIMYSKILAALCQAGDMKNARTLFDVFVHR-GF 642

Query: 310 RPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILF-----EFLVK---- 360
            PD   Y +MI+ YC  N    A  L  +M   G  PD+ T+ +L      E+L K    
Sbjct: 643 TPDVVTYTIMINSYCRMNCLQEAHDLFQDMKRRGIKPDVITFTVLLDGSLKEYLGKRFSS 702

Query: 361 -GRK----LWEASGL--FNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENH 413
            G++    L+ ++ L    +M  N +V+ +      +  +M +D+   A+  +  MIE+ 
Sbjct: 703 HGKRKTTSLYVSTILRDMEQMKINPDVVCYT---VLMDGHMKTDNFQQAVSLFDKMIESG 759

Query: 414 CSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARK 468
               + T   LV+GLC+   + +AV     M+ KG+      +S LK+ +IKARK
Sbjct: 760 LEPDTITYTALVSGLCNRGHVEKAVTLLNEMSSKGMTPDVHIISALKRGIIKARK 814



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 63/264 (23%), Positives = 111/264 (42%), Gaps = 39/264 (14%)

Query: 110 LLGKNCLFDAMWDAIKSMKK---ENVL-SLATFASVFSSYVVADRVKDAITTFDVMEQYG 165
           LL K C+   +  A+K + +    NV  S   ++ + ++   A  +K+A T FDV    G
Sbjct: 582 LLSKLCMTGDIEKAVKLLDRMLLSNVEPSKIMYSKILAALCQAGDMKNARTLFDVFVHRG 641

Query: 166 CKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKE----RDV 220
              DV     ++++ CR     +A    + +  R IKPD  T+ +LL+G  KE    R  
Sbjct: 642 FTPDVVTYTIMINSYCRMNCLQEAHDLFQDMKRRGIKPDVITFTVLLDGSLKEYLGKRFS 701

Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFF 280
           ++ K+    +                Y+ T+L+              M +   NP +  +
Sbjct: 702 SHGKRKTTSL----------------YVSTILRD-------------MEQMKINPDVVCY 732

Query: 281 KLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMV 340
            +  +  +   N + A  ++  M+   G  PDT  Y  ++S  C       A+ LL+EM 
Sbjct: 733 TVLMDGHMKTDNFQQAVSLFDKMI-ESGLEPDTITYTALVSGLCNRGHVEKAVTLLNEMS 791

Query: 341 YNGAFPDIQTYNILFEFLVKGRKL 364
             G  PD+   + L   ++K RK+
Sbjct: 792 SKGMTPDVHIISALKRGIIKARKV 815



 Score = 47.8 bits (112), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 86/377 (22%), Positives = 141/377 (37%), Gaps = 56/377 (14%)

Query: 118 DAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLL 177
           + ++    +  K N   L  F     + V  +    AI       + G   DV   N L 
Sbjct: 143 ETLFQDFNTSHKNNYFLLRAFNGFVKTCVSLNMFDKAIDFLFQTRRRGILPDVLTCNFLF 202

Query: 178 SAICRDG---KTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEV 234
           + +   G   K +  ++ L+   G I P+  TYAI+++   K+ D+      F EM   V
Sbjct: 203 NRLVEHGEVDKALAVYEQLKRF-GFI-PNCYTYAIVIKALCKKGDLKQPLCVFEEME-RV 259

Query: 235 GWDPDNVPAYDSYLITLLKG--CDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTG-- 290
           G  P +   + +Y+  L      D  YE + + ++    G  P   +   A+   + G  
Sbjct: 260 GVIPHSY-CFAAYIEGLCNNHRSDLGYEVLQAFRK----GNAPLEVY---AYTAVVRGFC 311

Query: 291 --QNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVY------- 341
               L  A+ ++  M  R G  PD ++Y+ +I  YC S+    A+ L DEM+        
Sbjct: 312 NEMKLDEAQGVFDDM-ERQGVVPDVYVYSSLIHGYCKSHNLLRALALHDEMISRGVKTNC 370

Query: 342 ----------------------------NGAFPDIQTYNILFEFLVKGRKLWEASGLFNE 373
                                       +G F D   YNI+F+ L    K+ +A  +  E
Sbjct: 371 VVVSCILHCLGEMGMTLEVVDQFKELKESGMFLDGVAYNIVFDALCMLGKVEDAVEMVEE 430

Query: 374 MVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHM 433
           M      L+ ++    +  Y    D   A   +K M E        T N+L AGL     
Sbjct: 431 MKSKRLGLDVKHYTTLINGYCLQGDLVTAFNMFKEMKEKGLKPDIVTYNVLAAGLSRNGH 490

Query: 434 LPEAVKYAKGMAEKGIQ 450
             E VK    M  +G++
Sbjct: 491 ARETVKLLDFMESQGMK 507


>gi|449441065|ref|XP_004138304.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61370,
           mitochondrial-like [Cucumis sativus]
 gi|449477571|ref|XP_004155060.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61370,
           mitochondrial-like [Cucumis sativus]
          Length = 487

 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 89/365 (24%), Positives = 157/365 (43%), Gaps = 17/365 (4%)

Query: 26  FASHLDVPNLPPTIKTLCEIIANTPSP--TVEDVLDKTLIRVSQETVEQVLKFSYSHPGP 83
           F S     N    +  LCE+I+ T      +E  L+K  I ++   V QV+  S  +  P
Sbjct: 37  FCSLHSTVNNGAAVSKLCEVISCTIGGLDELESSLNKCTISLTSSLVTQVID-SSKNEAP 95

Query: 84  A---VKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKK-ENVLSLATFA 139
               ++FF WS  +LN       +N  +    +   + A+   + ++KK +  +   TF 
Sbjct: 96  TRRLLRFFLWSLKKLNHTLEDEDFNNAIRFFAQKKDYTAVNILLSNLKKADRAMDGQTFG 155

Query: 140 SVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR 199
            V  ++V  DR  +A+  F  +E+Y C HD F + ++++A+C  G    A   +     +
Sbjct: 156 FVAEAFVKMDREDEALGLFKNLEKYKCPHDQFTVVAIITALCSKGHAKRAEGVVLHHKDK 215

Query: 200 IKPD-NDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL-----K 253
           I    +  Y  LL GW  +++   A++   EM  + G  PD +  Y+++L  L      K
Sbjct: 216 ISSTMSCIYRSLLYGWSIKKNTKEARRILKEMKSD-GTMPD-LFCYNTFLKCLCEKNVEK 273

Query: 254 GCDGIY-ETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD 312
              G+  E++N +  M     +P    + +    CL              M+ R G +PD
Sbjct: 274 NPSGLVPESLNVMMEMRSYKISPNSISYNILL-SCLCKTRRVKESCKILEMMKRTGCQPD 332

Query: 313 THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFN 372
              Y +M  +   +   G   +++DEM+  G  PD + Y  L   L    +   A  LF 
Sbjct: 333 CVSYYLMARVLFLTGRFGKGREIVDEMIEEGLTPDRKFYYDLIGILCGVERTNYALELFE 392

Query: 373 EMVKN 377
           +M ++
Sbjct: 393 KMKRS 397


>gi|296083214|emb|CBI22850.3| unnamed protein product [Vitis vinifera]
          Length = 724

 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 94/392 (23%), Positives = 154/392 (39%), Gaps = 48/392 (12%)

Query: 84  AVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASVF 142
           A+++F+  A   + KH+P  + ++++ L      D +   ++ MK E +  S   F SV 
Sbjct: 59  ALEYFKSIANSKSFKHTPLTYQMMIEKLASEREMDCVQYLLQQMKLEGISCSEDLFISVI 118

Query: 143 SSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIK- 201
            SY  A   + A+ TF  M+ +  K  V   N +L A+  + +    +Q +  +   +K 
Sbjct: 119 GSYRRAGSSEQALKTFYRMQDFRVKPTVKIYNHILDALLDENR----FQMINPIYSNMKK 174

Query: 202 ----PDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPD------------------ 239
               P+  TY ILL+   K   V  A K   EM  + G DPD                  
Sbjct: 175 DGMEPNVFTYNILLKALCKNNRVDGAHKLLVEMSSK-GCDPDEVSYTTLISSLCKLGKVK 233

Query: 240 -----------NVPAYDSYLITLLKGCDGIY---ETVNSLKRMMERGCNPGMTFFKLAFE 285
                      +VP Y++    L+ G    Y   E    L  MM +G +P +  +     
Sbjct: 234 EARELAMSFTPSVPVYNA----LINGVCKEYTFEEAFQLLDEMMNKGIDPNVISYTTIIN 289

Query: 286 ECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAF 345
                 N+  +  +   M  R G  P+ H +  +I  +     +  A+   D M+  G  
Sbjct: 290 ALSDAGNVELSLAVLAKMFAR-GCSPNLHTFTSLIKGFFLKGGSHEALDFWDRMIREGVV 348

Query: 346 PDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKF 405
           P++  YN L   L   R L +A  +FN+M  N    N     A +  Y  + D   A + 
Sbjct: 349 PNVVAYNALMHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSALIDGYAKAGDLDGASEV 408

Query: 406 WKYMIENHCSDLSETGNLLVAGLCDMHMLPEA 437
           W +MI + C         +V  LC   M  +A
Sbjct: 409 WNWMITHGCHPNVVAYTCMVDVLCRNSMFNQA 440



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 98/391 (25%), Positives = 166/391 (42%), Gaps = 27/391 (6%)

Query: 87  FFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSY 145
           F+R   +++  K +   +N ++D L     F  +     +MKK+ +  ++ T+  +  + 
Sbjct: 134 FYRMQDFRV--KPTVKIYNHILDALLDENRFQMINPIYSNMKKDGMEPNVFTYNILLKAL 191

Query: 146 VVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDND 205
              +RV  A      M   GC  D  +  +L+S++C+ GK  +A    R +     P   
Sbjct: 192 CKNNRVDGAHKLLVEMSSKGCDPDEVSYTTLISSLCKLGKVKEA----RELAMSFTPSVP 247

Query: 206 TYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSL 265
            Y  L+ G  KE     A +   EM +  G DP NV +Y + +I  L     +  ++  L
Sbjct: 248 VYNALINGVCKEYTFEEAFQLLDEM-MNKGIDP-NVISYTT-IINALSDAGNVELSLAVL 304

Query: 266 KRMMERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYC 324
            +M  RGC+P + TF  L     L G +    +F W  M+ R G  P+   YN ++   C
Sbjct: 305 AKMFARGCSPNLHTFTSLIKGFFLKGGSHEALDF-WDRMI-REGVVPNVVAYNALMHGLC 362

Query: 325 YSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHE 384
                G A+ + ++M  NG  P+++TY+ L +   K   L  AS ++N M+ +       
Sbjct: 363 SKRSLGDAVSVFNQMEINGCCPNVRTYSALIDGYAKAGDLDGASEVWNWMITH------- 415

Query: 385 NCRAAVRVYMDSDDPYVAIKFWKY---MIEN----HCSDLSETGNLLVAGLCDMHMLPEA 437
            C   V  Y    D       +     +IEN    +C   + T N  + GLC    +  A
Sbjct: 416 GCHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFNTFIKGLCGSGRVDWA 475

Query: 438 VKYAKGMAEKGIQVTPFALSKLKQILIKARK 468
           +K    M   G        ++L   L+K R+
Sbjct: 476 IKVFDQMGNSGCFPNTTTYNELLDSLLKDRR 506



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 71/283 (25%), Positives = 121/283 (42%), Gaps = 24/283 (8%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKE----NVLSLATFASVFSSYVVADRVKDAITTF 158
            +N +++ + K   F+  +  +  M  +    NV+S  T  +  S    A  V+ ++   
Sbjct: 248 VYNALINGVCKEYTFEEAFQLLDEMMNKGIDPNVISYTTIINALSD---AGNVELSLAVL 304

Query: 159 DVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKE 217
             M   GC  ++    SL+      G + +A  F  R++   + P+   Y  L+ G   +
Sbjct: 305 AKMFARGCSPNLHTFTSLIKGFFLKGGSHEALDFWDRMIREGVVPNVVAYNALMHGLCSK 364

Query: 218 RDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG--CDGIYETVNSLKRMMERGCNP 275
           R + +A   F +M I  G  P NV  Y + +    K    DG  E  N    M+  GC+P
Sbjct: 365 RSLGDAVSVFNQMEIN-GCCP-NVRTYSALIDGYAKAGDLDGASEVWN---WMITHGCHP 419

Query: 276 GMTFFKLAFEECLTGQNLRGAEFIWG-AMVGRIGFR---PDTHMYNMMISLYCYSNETGA 331
            +  +      C+     R + F     ++  +      P+T  +N  I   C S     
Sbjct: 420 NVVAYT-----CMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFNTFIKGLCGSGRVDW 474

Query: 332 AMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
           A+K+ D+M  +G FP+  TYN L + L+K R+  EA GL  +M
Sbjct: 475 AIKVFDQMGNSGCFPNTTTYNELLDSLLKDRRFGEAFGLVKDM 517



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 72/332 (21%), Positives = 131/332 (39%), Gaps = 42/332 (12%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           +L TF S+   + +     +A+  +D M + G   +V A N+L+  +C      DA    
Sbjct: 315 NLHTFTSLIKGFFLKGGSHEALDFWDRMIREGVVPNVVAYNALMHGLCSKRSLGDAVSVF 374

Query: 194 RVVD-GRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDP-------------- 238
             ++     P+  TY+ L++G+ K  D+  A + +  M+   G  P              
Sbjct: 375 NQMEINGCCPNVRTYSALIDGYAKAGDLDGASEVWNWMITH-GCHPNVVAYTCMVDVLCR 433

Query: 239 ----------------DNVPAYDSYLITLLKGCDG---IYETVNSLKRMMERGCNPGMTF 279
                           +N P       T +KG  G   +   +    +M   GC P  T 
Sbjct: 434 NSMFNQAYCLIENMQVENCPPNTVTFNTFIKGLCGSGRVDWAIKVFDQMGNSGCFPNTTT 493

Query: 280 FKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEM 339
           +    +  L  +    A  +   M  R G   +   YN +I  YC +   G A++LL +M
Sbjct: 494 YNELLDSLLKDRRFGEAFGLVKDMEHR-GIELNLVTYNTIIYGYCCAGMLGEALELLGKM 552

Query: 340 VYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNE---NVLNHENCRAAVRVYMDS 396
           V  G  PD  T NI+ +   K  K+  A  L + +   +   +++ + +  + +  ++  
Sbjct: 553 VVRGTKPDAITVNIVIDAYCKQGKVNIAIQLMDRLSAGKWHPDIIAYTSLISGICTHIGV 612

Query: 397 DDPYVAIKFWKYMIENHCSDLSETGNLLVAGL 428
           ++   AI + + M+    S    T N+LV  L
Sbjct: 613 EE---AIVYLRRMLSEGISPNVATWNVLVRHL 641



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 60/258 (23%), Positives = 107/258 (41%), Gaps = 41/258 (15%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVM 161
           A+  +VD+L +N +F+  +  I++M+ EN   +  TF +       + RV  AI  FD M
Sbjct: 423 AYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFNTFIKGLCGSGRVDWAIKVFDQM 482

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDV 220
              GC  +    N LL ++ +D +  +A+  ++ ++ R I+ +  TY  ++ G+     +
Sbjct: 483 GNSGCFPNTTTYNELLDSLLKDRRFGEAFGLVKDMEHRGIELNLVTYNTIIYGYCCAGML 542

Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFF 280
             A +  G+MV+  G  PD +                   TVN +   ++  C  G    
Sbjct: 543 GEALELLGKMVVR-GTKPDAI-------------------TVNIV---IDAYCKQGKVNI 579

Query: 281 KLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMV 340
            +   + L+          W          PD   Y  +IS  C       A+  L  M+
Sbjct: 580 AIQLMDRLSAGK-------W---------HPDIIAYTSLISGICTHIGVEEAIVYLRRML 623

Query: 341 YNGAFPDIQTYNILFEFL 358
             G  P++ T+N+L   L
Sbjct: 624 SEGISPNVATWNVLVRHL 641


>gi|359479250|ref|XP_002275790.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Vitis vinifera]
          Length = 746

 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 89/383 (23%), Positives = 163/383 (42%), Gaps = 37/383 (9%)

Query: 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDV 160
           Y  N++++ L KN   +     +  M+++ V   + T+ ++ ++Y     +++A    D 
Sbjct: 255 YTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDS 314

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERD 219
           M   G K  VF  N++++ +C+ GK + A   L  ++   + PD  TY ILL    +  +
Sbjct: 315 MSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDN 374

Query: 220 VANAKKTFGEMVIEVGWDPDNVP-----------------------------AYDSYLIT 250
           + +A++ F EM  + G  PD V                              A D+ + T
Sbjct: 375 MMDAERIFDEMPSQ-GVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYT 433

Query: 251 LLKG--C-DGIY-ETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGR 306
           +L G  C +G+  E +     M+E+GC   +  +          + L  A+ ++  M  R
Sbjct: 434 ILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTER 493

Query: 307 IGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWE 366
            G  PD + +  +I+ Y        A+ L + M+     PD+ TYN L +   KG ++ +
Sbjct: 494 -GVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEK 552

Query: 367 ASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVA 426
            + L+N+M+      NH +    +  Y +      A + W  M+E        T N +V 
Sbjct: 553 VNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVK 612

Query: 427 GLCDMHMLPEAVKYAKGMAEKGI 449
           G C      +A ++   M  KGI
Sbjct: 613 GYCRAGNAVKADEFLSNMLLKGI 635



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 75/316 (23%), Positives = 137/316 (43%), Gaps = 10/316 (3%)

Query: 118 DAMWDAIKSMKKENV-LSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSL 176
           D  W+  + + +  V +++ T   + ++     ++++  +    ME+ G   DV   N+L
Sbjct: 236 DLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTL 295

Query: 177 LSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVG 235
           ++A CR G   +A++ +  + G+ +KP   TY  ++ G  K      AK    EM +++G
Sbjct: 296 INAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEM-LKIG 354

Query: 236 WDPDNVPAYDSYLITLLKGC--DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNL 293
             PD      +Y I L++ C  D + +       M  +G  P +  F  A    L+    
Sbjct: 355 MSPDTA----TYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFS-ALIGLLSKNGC 409

Query: 294 RGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNI 353
                 +   +   G  PD  +Y ++I  +C +     A+K+ DEM+  G   D+ TYN 
Sbjct: 410 LDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNT 469

Query: 354 LFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENH 413
           +   L K + L EA  LF EM +     +       +  Y    +   A+  ++ MI+ +
Sbjct: 470 ILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRN 529

Query: 414 CSDLSETGNLLVAGLC 429
                 T N L+ G C
Sbjct: 530 LKPDVVTYNTLIDGFC 545



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 88/324 (27%), Positives = 144/324 (44%), Gaps = 27/324 (8%)

Query: 138 FASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVV 196
           F  +  +YV A ++++    F V++  G    + A NSLL  + + G    AW+ +  VV
Sbjct: 187 FDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEVV 246

Query: 197 DGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD 256
              ++ +  T  I++    K + + N K    +M  E G  PD V  Y++ +    +   
Sbjct: 247 RSGVQVNVYTLNIMINALCKNQKIENTKSFLSDME-EKGVFPD-VVTYNTLINAYCR--Q 302

Query: 257 GIYETVNSL-KRMMERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTH 314
           G+ E    L   M  +G  P + T+  +    C TG+ LR A+ +   M+ +IG  PDT 
Sbjct: 303 GLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLR-AKGVLDEML-KIGMSPDTA 360

Query: 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
            YN+++   C ++    A ++ DEM   G  PD+ +++ L   L K   L +A   F +M
Sbjct: 361 TYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDM 420

Query: 375 VKNE---------NVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLV 425
            KN           +L    CR  V           A+K    M+E  C     T N ++
Sbjct: 421 -KNAGLAPDNVIYTILIGGFCRNGVMSE--------ALKVRDEMLEQGCVLDVVTYNTIL 471

Query: 426 AGLCDMHMLPEAVKYAKGMAEKGI 449
            GLC   ML EA +    M E+G+
Sbjct: 472 NGLCKEKMLSEADELFTEMTERGV 495



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 73/317 (23%), Positives = 135/317 (42%), Gaps = 53/317 (16%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKK-----ENVLSLATFASVFSSYVVADRVKDAITT 157
           +++ ++ LL KN   D      + MK      +NV+    +  +   +     + +A+  
Sbjct: 396 SFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVI----YTILIGGFCRNGVMSEALKV 451

Query: 158 FDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEK 216
            D M + GC  DV   N++L+ +C++    +A + F  + +  + PD  T+  L+ G+ K
Sbjct: 452 RDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSK 511

Query: 217 ERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSL-KRMMERG--- 272
           + ++  A   F EM+I+    PD V  Y++ +    KG +   E VN L   M+ R    
Sbjct: 512 DGNMNKAVTLF-EMMIQRNLKPD-VVTYNTLIDGFCKGSE--MEKVNELWNDMISRRIYP 567

Query: 273 ------------CNPGMT--FFKL-------AFEE------------CLTGQNLRGAEFI 299
                       CN G     F+L        FE             C  G  ++  EF+
Sbjct: 568 NHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFL 627

Query: 300 WGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLV 359
              ++   G  PD   YN +I+ +        A  L+++M  +G  PD+ TYN++     
Sbjct: 628 SNMLLK--GIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFS 685

Query: 360 KGRKLWEASGLFNEMVK 376
           +  ++ EA  +  +M++
Sbjct: 686 RQGRMQEAELIMLKMIE 702



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 65/281 (23%), Positives = 119/281 (42%), Gaps = 16/281 (5%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVM 161
            +N +++ L K  +     +    M +  V     TF ++ + Y     +  A+T F++M
Sbjct: 466 TYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMM 525

Query: 162 EQYGCKHDVFALNSLLSAICRDG---KTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKER 218
            Q   K DV   N+L+   C+     K  + W    ++  RI P++ +Y IL+ G+    
Sbjct: 526 IQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWN--DMISRRIYPNHISYGILINGYCNMG 583

Query: 219 DVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNS---LKRMMERGCNP 275
            V+ A + + EMV E G++   +        T++KG       V +   L  M+ +G  P
Sbjct: 584 CVSEAFRLWDEMV-EKGFEATIITCN-----TIVKGYCRAGNAVKADEFLSNMLLKGIVP 637

Query: 276 GMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKL 335
               +       +  +N+  A  +   M    G  PD   YN++++ +        A  +
Sbjct: 638 DGITYNTLINGFIKEENMDRAFALVNKMENS-GLLPDVITYNVILNGFSRQGRMQEAELI 696

Query: 336 LDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK 376
           + +M+  G  PD  TY  L    V    L EA  + +EM++
Sbjct: 697 MLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQ 737


>gi|12324362|gb|AAG52154.1|AC022355_15 unknown protein; 19199-17308 [Arabidopsis thaliana]
          Length = 558

 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 79/333 (23%), Positives = 149/333 (44%), Gaps = 5/333 (1%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           TF ++     + ++  +A+   D M Q GC+ ++     +++ +C+ G    A+  L  +
Sbjct: 116 TFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKM 175

Query: 197 DG-RIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
           +  +I+ D   +  +++   K R V +A   F EM  + G  P NV  Y S LI+ L   
Sbjct: 176 EAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETK-GIRP-NVVTYSS-LISCLCSY 232

Query: 256 DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHM 315
               +    L  M+E+  NP +  F    +  +       AE +   M+ R    PD   
Sbjct: 233 GRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKR-SIDPDIFT 291

Query: 316 YNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
           YN +I+ +C  +    A ++ + MV    FPD+ TYN L +   K +++ + + LF EM 
Sbjct: 292 YNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMS 351

Query: 376 KNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLP 435
               V +       ++      D   A K +K M+ +       T ++L+ GLC+   L 
Sbjct: 352 HRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLE 411

Query: 436 EAVKYAKGMAEKGIQVTPFALSKLKQILIKARK 468
           +A++    M +  I++  +  + + + + KA K
Sbjct: 412 KALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGK 444



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 77/341 (22%), Positives = 139/341 (40%), Gaps = 48/341 (14%)

Query: 150 RVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIK----PDND 205
           ++ DAI  F  M +      +F  N LLSAI +  K  D    L ++   +K    P   
Sbjct: 22  KLDDAIGLFGGMVKSRPLPSIFEFNKLLSAIAK-MKKFDLVISLALLGKMMKLGYEPSIV 80

Query: 206 TYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC---DGIYETV 262
           T + LL G+   + +++A     +MV E+G+ PD +        TL+ G    +   E V
Sbjct: 81  TLSSLLNGYCHGKRISDAVALVDQMV-EMGYRPDTIT-----FTTLIHGLFLHNKASEAV 134

Query: 263 NSLKRMMERGCNPGMTFF-------------KLAFE--ECLTGQNLRGAEFIWGAMVGRI 307
             + RM++RGC P +  +              LAF     +    +     I+  ++  +
Sbjct: 135 ALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSL 194

Query: 308 -------------------GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDI 348
                              G RP+   Y+ +IS  C       A +LL +M+     P++
Sbjct: 195 CKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNL 254

Query: 349 QTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKY 408
            T+N L +  VK  K  EA  L ++M+K     +     + +  +   D    A + +++
Sbjct: 255 VTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEF 314

Query: 409 MIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
           M+   C    +T N L+ G C    + +  +  + M+ +G+
Sbjct: 315 MVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGL 355



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 98/404 (24%), Positives = 157/404 (38%), Gaps = 89/404 (22%)

Query: 104 WNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVME 162
           +N ++D L K    D   +  K M+ + +  ++ T++S+ S      R  DA      M 
Sbjct: 187 FNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMI 246

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERDVA 221
           +     ++   N+L+ A  ++GK ++A +    ++   I PD  TY  L+ G+     + 
Sbjct: 247 EKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLD 306

Query: 222 NAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFK 281
            AK+ F  MV       D  P  D+Y  TL+KG                           
Sbjct: 307 KAKQMFEFMV-----SKDCFPDLDTY-NTLIKGF-------------------------- 334

Query: 282 LAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVY 341
                C + +   G E ++  M  R G   DT  Y  +I    +  +   A K+  +MV 
Sbjct: 335 -----CKSKRVEDGTE-LFREMSHR-GLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVS 387

Query: 342 NGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYV 401
           +G  PDI TY+IL + L    KL +A  +F+ M K+E  L+                   
Sbjct: 388 DGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLD------------------- 428

Query: 402 AIKFWKYMIENHCS------------DLSETG--------NLLVAGLCDMHMLPEAVKYA 441
            I  +  MIE  C              LS  G        N +++GLC   +L EA    
Sbjct: 429 -IYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALL 487

Query: 442 KGMAEKGIQVTPFALSKLKQILIKAR----KEAVYEELLKKCKA 481
           K M E G    P   S     LI+A      +A   EL+++ ++
Sbjct: 488 KKMKEDG----PLPDSGTYNTLIRAHLRDGDKAASAELIREMRS 527



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 52/221 (23%), Positives = 92/221 (41%), Gaps = 11/221 (4%)

Query: 265 LKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYC 324
           L +MM+ G  P +            G+ +  A  +   MV  +G+RPDT  +  +I    
Sbjct: 67  LGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMV-EMGYRPDTITFTTLIHGLF 125

Query: 325 YSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNE---NVL 381
             N+   A+ L+D MV  G  P++ TY ++   L K   +  A  L N+M   +   +V+
Sbjct: 126 LHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVV 185

Query: 382 NHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYA 441
                  ++  Y   DD   A+  +K M          T + L++ LC      +A +  
Sbjct: 186 IFNTIIDSLCKYRHVDD---ALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLL 242

Query: 442 KGMAEKGIQVTPFALSKLKQILIKARK----EAVYEELLKK 478
             M EK I       + L    +K  K    E ++++++K+
Sbjct: 243 SDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKR 283


>gi|356529971|ref|XP_003533559.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g19890-like [Glycine max]
          Length = 693

 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 86/332 (25%), Positives = 152/332 (45%), Gaps = 16/332 (4%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-F 192
           +L  F  +         VK A    + M   G K +V+   +L+  +C+ G T  A++ F
Sbjct: 271 NLINFTCMIEGLCKRGSVKQAFEMLEEMVGRGWKPNVYTHTALIDGLCKKGWTEKAFRLF 330

Query: 193 LRVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITL 251
           L++V     KP+  TY  ++ G+ ++  +  A+     M  E G  P+     ++Y  TL
Sbjct: 331 LKLVRSENHKPNVLTYTAMISGYCRDEKMNRAEMLLSRMK-EQGLAPNT----NTY-TTL 384

Query: 252 LKG-CD-GIYETVNSLKRMM-ERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRI 307
           + G C  G +E    L  +M E G +P + T+  +    C  G+     + +      R 
Sbjct: 385 IDGHCKAGNFERAYELMNVMNEEGFSPNVCTYNAIVDGLCKKGRVQEAYKVLKSGF--RN 442

Query: 308 GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEA 367
           G   D   Y ++IS +C   E   A+ L ++MV +G  PDI +Y  L     + +++ E+
Sbjct: 443 GLDADKVTYTILISEHCKQAEIKQALVLFNKMVKSGIQPDIHSYTTLIAVFCREKRMKES 502

Query: 368 SGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAG 427
              F E V+   V  ++   + +  Y    +  +A+KF+  M ++ C+  S T   L++G
Sbjct: 503 EMFFEEAVRFGLVPTNKTYTSMICGYCREGNLRLALKFFHRMSDHGCASDSITYGALISG 562

Query: 428 LCDMHMLPEAVKYAKGMAEKGIQVTPFALSKL 459
           LC    L EA      M EKG+  TP  ++++
Sbjct: 563 LCKQSKLDEARCLYDAMIEKGL--TPCEVTRV 592



 Score = 46.6 bits (109), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 91/444 (20%), Positives = 158/444 (35%), Gaps = 72/444 (16%)

Query: 23  RSTFASHLDVPN-LPPTIKTLCEII----------ANTPSPTVEDVLDKTLIRVSQETVE 71
           R+   +H+  P+ +  T+  +C ++          A    PT+   +D   +   Q    
Sbjct: 23  RTKTLTHITSPSCVQSTVTRVCSLVYDSYHHHYNHARFSPPTLHLDVDPNSLTHDQAVTI 82

Query: 72  QVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKEN 131
                S +    A+ FF W+      +H    +      L  N  F+   + ++ M K  
Sbjct: 83  VASLASDAGSMVALSFFNWAIASSKFRHFTRLYIACAASLISNKNFEKAHEVMQCMVK-- 140

Query: 132 VLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ 191
                +FA +        RVK+AI     M   G       LN ++  +   G    A  
Sbjct: 141 -----SFAEI-------GRVKEAIEMVIEMHNQGLAPSTKTLNWVVKIVTEMGLVEYAEN 188

Query: 192 FLRVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLIT 250
               +  R ++P+  +Y +++ G+ K  +V  + +  G M IE G+  DN          
Sbjct: 189 LFDEMCARGVQPNCVSYRVMVVGYCKLGNVLESDRWLGGM-IERGFVVDNA--------- 238

Query: 251 LLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFR 310
                        +L  ++   C  G     L +         R  E         +G R
Sbjct: 239 -------------TLSLIVREFCEKGFVTRALWYFR-------RFCE---------MGLR 269

Query: 311 PDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGL 370
           P+   +  MI   C       A ++L+EMV  G  P++ T+  L + L K     +A  L
Sbjct: 270 PNLINFTCMIEGLCKRGSVKQAFEMLEEMVGRGWKPNVYTHTALIDGLCKKGWTEKAFRL 329

Query: 371 FNEMVKNE----NVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVA 426
           F ++V++E    NVL +    A +  Y   +    A      M E   +  + T   L+ 
Sbjct: 330 FLKLVRSENHKPNVLTYT---AMISGYCRDEKMNRAEMLLSRMKEQGLAPNTNTYTTLID 386

Query: 427 GLCDMHMLPEAVKYAKGMAEKGIQ 450
           G C       A +    M E+G  
Sbjct: 387 GHCKAGNFERAYELMNVMNEEGFS 410


>gi|449453087|ref|XP_004144290.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
 gi|449522905|ref|XP_004168466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 915

 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 88/370 (23%), Positives = 153/370 (41%), Gaps = 28/370 (7%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVM 161
            +N+++ LL +  + D M      M  + V  ++ T  ++ + Y     V +A      +
Sbjct: 171 CYNMLLMLLSRFLMIDEMKSVYLEMLDDMVTPNIFTLNTMVNGYCKLGNVVEAELYVSKI 230

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQ--FLRVVDGRIKPDNDTYAILLEGWEKERD 219
            Q G   D F   SL+   CR+ K +DA    FL + +     +  +Y  L+ G+ + R 
Sbjct: 231 VQAGLSLDTFTYTSLILGYCRN-KNVDAANAIFLSMPNKGCLRNEVSYTNLIHGFCEARR 289

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD--GIYETVNSLKRMMERGCNPGM 277
           V  A K F +M  +  W     P   +Y + +   C      E +N  K M E+ C P +
Sbjct: 290 VDEALKLFSQMHEDNCW-----PTVRTYTVIIFALCQLGRKTEALNMFKEMTEKHCQPNV 344

Query: 278 TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLD 337
             + +         N   A+ I   M+ + G  P    YN +I  YC    + +A+++L 
Sbjct: 345 HTYTVLICSLCEDSNFDDAKKILNGMLEK-GLIPSVVTYNALIDGYCKKGLSASALEILS 403

Query: 338 EMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNE--------NVLNHENCRAA 389
            M  N   P+ +TYN L     +G+ + +A  L ++M++ +        N+L H  C+  
Sbjct: 404 LMESNNCSPNARTYNELILGFCRGKNIHKAMSLLHKMLERKLQPNVVTYNILIHGQCKEG 463

Query: 390 VRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
                   D   A K    M E+       T ++ +  LC   ++ EA    + + EKGI
Sbjct: 464 --------DLGSAYKLLSLMNESGLVPDEWTYSVFIDTLCKRGLVEEARSLFESLKEKGI 515

Query: 450 QVTPFALSKL 459
           +      S L
Sbjct: 516 KANEVIYSTL 525



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 68/288 (23%), Positives = 126/288 (43%), Gaps = 11/288 (3%)

Query: 94  QLNDKHSP---YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVAD 149
           ++ +KH     + + +++  L ++  FD     +  M ++ ++ S+ T+ ++   Y    
Sbjct: 334 EMTEKHCQPNVHTYTVLICSLCEDSNFDDAKKILNGMLEKGLIPSVVTYNALIDGYCKKG 393

Query: 150 RVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYA 208
               A+    +ME   C  +    N L+   CR      A   L ++++ +++P+  TY 
Sbjct: 394 LSASALEILSLMESNNCSPNARTYNELILGFCRGKNIHKAMSLLHKMLERKLQPNVVTYN 453

Query: 209 ILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSL-KR 267
           IL+ G  KE D+ +A K    M  E G  PD    Y  ++ TL K   G+ E   SL + 
Sbjct: 454 ILIHGQCKEGDLGSAYKLLSLMN-ESGLVPDEW-TYSVFIDTLCK--RGLVEEARSLFES 509

Query: 268 MMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSN 327
           + E+G       +    +       +    F+   M+   G  P++  YN +I  YC   
Sbjct: 510 LKEKGIKANEVIYSTLIDGYCKVGKVSDGRFLLDKMLSA-GCVPNSITYNSLIDGYCKEK 568

Query: 328 ETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
               A  L+D M+     P   TY IL + L+K  +  +A  +F++M+
Sbjct: 569 NFKEARLLVDIMIKRDIEPAADTYTILIDNLLKDDEFDQAHDMFDQML 616



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 72/302 (23%), Positives = 129/302 (42%), Gaps = 17/302 (5%)

Query: 151 VKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAI 209
           V++A + F+ +++ G K +    ++L+   C+ GK  D    L +++     P++ TY  
Sbjct: 500 VEEARSLFESLKEKGIKANEVIYSTLIDGYCKVGKVSDGRFLLDKMLSAGCVPNSITYNS 559

Query: 210 LLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLI---TLLKGCDGIYETVNSLK 266
           L++G+ KE++   A+     +++++    D  PA D+Y I    LLK  D   +  +   
Sbjct: 560 LIDGYCKEKNFKEAR-----LLVDIMIKRDIEPAADTYTILIDNLLKD-DEFDQAHDMFD 613

Query: 267 RMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYS 326
           +M+  G +P +  +        +   L+ AE +   M  + G  PDT +Y + I  Y   
Sbjct: 614 QMLSTGSHPDVFIYTAFIHAYCSHGRLKDAEVLICKMNAK-GIMPDTMLYTLFIDAYGRF 672

Query: 327 NETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENC 386
                A  +L  M   G  P   TY+ L + L    K  E S        +  V +++  
Sbjct: 673 GSIDGAFGILKRMHEVGCEPSYYTYSCLIKHLSNA-KPKEVSSSSELSDLSSGVASNDFS 731

Query: 387 RAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAE 446
               RV     D    +  +  M E+ C+  + T    + GLC +  L  A +    M E
Sbjct: 732 NCWRRV-----DYEFTLDLFGKMAEHGCAPNANTYGKFITGLCKVGCLEVAHRLFDHMKE 786

Query: 447 KG 448
           KG
Sbjct: 787 KG 788



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 84/423 (19%), Positives = 154/423 (36%), Gaps = 68/423 (16%)

Query: 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASVFSSYVVADRVKDAITTFDV 160
           + +++ +D L K  L +      +S+K++ +  +   ++++   Y    +V D     D 
Sbjct: 485 WTYSVFIDTLCKRGLVEEARSLFESLKEKGIKANEVIYSTLIDGYCKVGKVSDGRFLLDK 544

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERD 219
           M   GC  +    NSL+   C++    +A   + ++  R I+P  DTY IL++   K+ +
Sbjct: 545 MLSAGCVPNSITYNSLIDGYCKEKNFKEARLLVDIMIKRDIEPAADTYTILIDNLLKDDE 604

Query: 220 VANAKKTFGEMVIEVGWDPDN------VPAY-----------------------DSYLIT 250
              A   F +M +  G  PD       + AY                       D+ L T
Sbjct: 605 FDQAHDMFDQM-LSTGSHPDVFIYTAFIHAYCSHGRLKDAEVLICKMNAKGIMPDTMLYT 663

Query: 251 LLKGCDGIYETVNS----LKRMMERGCNPGMTFFKLA----------------------- 283
           L     G + +++     LKRM E GC P    +                          
Sbjct: 664 LFIDAYGRFGSIDGAFGILKRMHEVGCEPSYYTYSCLIKHLSNAKPKEVSSSSELSDLSS 723

Query: 284 ------FEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLD 337
                 F  C    +      ++G M    G  P+ + Y   I+  C       A +L D
Sbjct: 724 GVASNDFSNCWRRVDYEFTLDLFGKMAEH-GCAPNANTYGKFITGLCKVGCLEVAHRLFD 782

Query: 338 EMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAV-RVYMDS 396
            M   G  P+   YN L     +     EA    + M++N ++ + ++C+  +  +Y + 
Sbjct: 783 HMKEKGQSPNEDIYNSLLGCSCQLGLYGEAIRWLDIMIENRHLPHLDSCKLLLCGLYDEG 842

Query: 397 DDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFAL 456
           +D      F  ++   +  D      +L+ GL    +  +       M  +G Q+ P   
Sbjct: 843 NDEKAKRVFCSFLQCEYNYD-EMVWKVLIDGLLKKGLSDKCSDLFGIMETQGCQIHPKTY 901

Query: 457 SKL 459
           S L
Sbjct: 902 SML 904


>gi|297721877|ref|NP_001173302.1| Os03g0201300 [Oryza sativa Japonica Group]
 gi|108706707|gb|ABF94502.1| salt-inducible protein, putative, expressed [Oryza sativa Japonica
           Group]
 gi|255674288|dbj|BAH92030.1| Os03g0201300 [Oryza sativa Japonica Group]
          Length = 796

 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 86/351 (24%), Positives = 139/351 (39%), Gaps = 43/351 (12%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RV 195
           TF  +  ++     + DA+ T   M+ +G   D    N+LL+A CR G   +A   L R+
Sbjct: 210 TFNLLVHTHCSKGTLADALATLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEARALLARM 269

Query: 196 VDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPD----NVPAY------- 244
               I P   TY  L+  + +   +  A K   E +   G++PD    NV A        
Sbjct: 270 KRDGIAPTQPTYNTLVSAFARLGWIKQATKVV-ESMTAYGFEPDLRTYNVLAVGLCQAGK 328

Query: 245 --DSYLI------------------TLLKGC---DGIYETVNSLKRMMERGCNPGMTFFK 281
             +++ +                  TL+  C       + +  L+ M ++G  P +    
Sbjct: 329 VDEAFRLKDEMERLSTALPDVVTYNTLVDACFKWRCSSDALRLLEEMRDKGVKPTLVTHN 388

Query: 282 LAFEE-CLTGQNLRGAEFIWGAM--VGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDE 338
           +  +  C  G+     E   G +  +   G  PD   YN +I  YC +     A  L+DE
Sbjct: 389 IVVKSLCKEGK----LEEALGKLEKIAEEGLAPDVITYNTLIDAYCKAGNVAKAFTLMDE 444

Query: 339 MVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDD 398
           MV  G   D  T N +   L K ++  +A  L +   +   V +  +    +  Y    +
Sbjct: 445 MVGKGLKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQRGFVPDEVSYGTVMAAYFKEYN 504

Query: 399 PYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
           P  A++ W  MIE        T N L+ GLC M  L EA+     + EKG+
Sbjct: 505 PEPALRLWDQMIERKLIPSISTYNTLIKGLCRMERLKEAIDKLNELVEKGL 555



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 91/398 (22%), Positives = 157/398 (39%), Gaps = 47/398 (11%)

Query: 110 LLGKNCLFDAMWDA---IKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVMEQYG 165
           LL  +C    + +A   +  MK++ +  +  T+ ++ S++     +K A    + M  YG
Sbjct: 249 LLNAHCRKGMLGEARALLARMKRDGIAPTQPTYNTLVSAFARLGWIKQATKVVESMTAYG 308

Query: 166 CKHDVFALNSLLSAICRDGKTIDAWQFLRVVD--GRIKPDNDTYAILLEGWEKERDVANA 223
            + D+   N L   +C+ GK  +A++    ++      PD  TY  L++   K R  ++A
Sbjct: 309 FEPDLRTYNVLAVGLCQAGKVDEAFRLKDEMERLSTALPDVVTYNTLVDACFKWRCSSDA 368

Query: 224 KKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD--GIYETVNSLKRMMERGCNPGMTFFK 281
            +   EM      D    P   ++ I +   C    + E +  L+++ E G  P +  + 
Sbjct: 369 LRLLEEM-----RDKGVKPTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEGLAPDVITYN 423

Query: 282 LAFEECLTGQNLRGAEFIWGAMVGR----------------------------------I 307
              +      N+  A  +   MVG+                                   
Sbjct: 424 TLIDAYCKAGNVAKAFTLMDEMVGKGLKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQR 483

Query: 308 GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEA 367
           GF PD   Y  +++ Y        A++L D+M+     P I TYN L + L +  +L EA
Sbjct: 484 GFVPDEVSYGTVMAAYFKEYNPEPALRLWDQMIERKLIPSISTYNTLIKGLCRMERLKEA 543

Query: 368 SGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAG 427
               NE+V+   V +       +  Y    D   A +F   M+EN       T N L+ G
Sbjct: 544 IDKLNELVEKGLVPDETTYNIIIHAYCKEGDLENAFRFHNKMVENSFKPDVVTCNTLMNG 603

Query: 428 LCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIK 465
           LC    L +A+K  +   EKG +V     + L Q + K
Sbjct: 604 LCLHGKLDKALKLFESWVEKGKKVDVITYNTLIQSMCK 641



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 90/412 (21%), Positives = 160/412 (38%), Gaps = 54/412 (13%)

Query: 105 NLVVDLLGKNCLFDAMWDAIKSMKKENVLS-LATFASVFSSYVVADRVKDAITTFDVMEQ 163
           N+VV  L K    +     ++ + +E +   + T+ ++  +Y  A  V  A T  D M  
Sbjct: 388 NIVVKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNTLIDAYCKAGNVAKAFTLMDEMVG 447

Query: 164 YGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVAN 222
            G K D F LN++L  +C+  +  DA + L     R   PD  +Y  ++  + KE +   
Sbjct: 448 KGLKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQRGFVPDEVSYGTVMAAYFKEYNPEP 507

Query: 223 AKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC---DGIYETVNSLKRMMERGCNPGMTF 279
           A + + +M+     +   +P+  +Y  TL+KG    + + E ++ L  ++E+G  P  T 
Sbjct: 508 ALRLWDQMI-----ERKLIPSISTY-NTLIKGLCRMERLKEAIDKLNELVEKGLVPDETT 561

Query: 280 FKLAFEECLTGQNLRGAEFIWGAMV---------------------GRI----------- 307
           + +         +L  A      MV                     G++           
Sbjct: 562 YNIIIHAYCKEGDLENAFRFHNKMVENSFKPDVVTCNTLMNGLCLHGKLDKALKLFESWV 621

Query: 308 --GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLW 365
             G + D   YN +I   C   +   A+   D+M   G  PD  TYN++   L +  +  
Sbjct: 622 EKGKKVDVITYNTLIQSMCKVGDVDTALHFFDDMEVKGLQPDAFTYNVVLSALSEAGRSE 681

Query: 366 EASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNL-- 423
           EA  + +++  +  +     C        D  D    +K  +   E   S+ ++   L  
Sbjct: 682 EAHNMLHKLADSGKLSQSFACPLLKPSSADEAD----VKEHEGKPEAESSEKAQDNALET 737

Query: 424 ---LVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVY 472
               + GLC    L EA      M +KG+ V       L + LIK +K   +
Sbjct: 738 YMERLNGLCTGGQLKEAKAVLDEMMQKGMPVDSSTYITLMEGLIKRQKRQTH 789



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 80/328 (24%), Positives = 130/328 (39%), Gaps = 7/328 (2%)

Query: 153 DAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILL 211
           DA+   + M   G K  +   N ++ ++C++GK  +A   L ++ +  + PD  TY  L+
Sbjct: 367 DALRLLEEMRDKGVKPTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNTLI 426

Query: 212 EGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSL-KRMME 270
           + + K  +VA A     EMV + G   D     ++ L  L K     YE    L     +
Sbjct: 427 DAYCKAGNVAKAFTLMDEMVGK-GLKMDTF-TLNTVLYNLCKM--KRYEDAEELLHSPPQ 482

Query: 271 RGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETG 330
           RG  P    +           N   A  +W  M+ R    P    YN +I   C      
Sbjct: 483 RGFVPDEVSYGTVMAAYFKEYNPEPALRLWDQMIER-KLIPSISTYNTLIKGLCRMERLK 541

Query: 331 AAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAV 390
            A+  L+E+V  G  PD  TYNI+     K   L  A    N+MV+N    +   C   +
Sbjct: 542 EAIDKLNELVEKGLVPDETTYNIIIHAYCKEGDLENAFRFHNKMVENSFKPDVVTCNTLM 601

Query: 391 RVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQ 450
                      A+K ++  +E        T N L+  +C +  +  A+ +   M  KG+Q
Sbjct: 602 NGLCLHGKLDKALKLFESWVEKGKKVDVITYNTLIQSMCKVGDVDTALHFFDDMEVKGLQ 661

Query: 451 VTPFALSKLKQILIKARKEAVYEELLKK 478
              F  + +   L +A +      +L K
Sbjct: 662 PDAFTYNVVLSALSEAGRSEEAHNMLHK 689


>gi|356561387|ref|XP_003548963.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 520

 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 101/427 (23%), Positives = 174/427 (40%), Gaps = 36/427 (8%)

Query: 80  HPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGK-------------NCL---------F 117
           H  P ++F +     +  KH P   +L   +  K             NC          F
Sbjct: 6   HIPPIIEFGKILGSLVKMKHYPTVISLSKQMEAKGIVPDLVTLSILINCFCHLGQMAFSF 65

Query: 118 DAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLL 177
             +   +K   + N + L T         +   VK ++   D +   G + D  +   LL
Sbjct: 66  SVLGKILKLGYQPNTIILNTL---MKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYGILL 122

Query: 178 SAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGW 236
           + +C+ G+T  A + LR ++ R  +PD   Y+ +++G  K++ V  A   + EM    G 
Sbjct: 123 NGLCKIGETRCAIKLLRTIEDRSTRPDVVMYSTIIDGLCKDKLVDEAYDLYSEMNAR-GI 181

Query: 237 DPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGM-TFFKLAFEECLTGQNLRG 295
            PD V  Y + LI        + E    L  M+ +  NP + T+  L    C  G+    
Sbjct: 182 FPD-VITYTT-LICGFCLAGQLMEAFGLLNEMILKNINPNIYTYNTLIDTLCKEGKVKES 239

Query: 296 AEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILF 355
              +  A++ + G +PD  +Y++++  YC   E   A ++   MV  G  PD+ +YNI+ 
Sbjct: 240 KNLL--AVMTKKGVKPDVVIYSILMDGYCLVGEVQKAKQIFLVMVQTGVNPDVYSYNIII 297

Query: 356 EFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCS 415
             L KG+++ EA  L  EM+    + +     + +            +   K M      
Sbjct: 298 NGLCKGKRVDEAMNLLREMLHKNMIPDTVTYSSLIDGLCKLGRITTILDLTKEMHHRGQP 357

Query: 416 DLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKA----RKEAV 471
               T N L+ GLC    L +A+     M E+GIQ   +  + L   L K     + +A+
Sbjct: 358 ANLVTYNSLLDGLCKNQNLDKAIALFMKMKERGIQPNKYTYTALIDGLCKGGRLKKGQAL 417

Query: 472 YEELLKK 478
           ++ LL K
Sbjct: 418 FQHLLVK 424



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 65/276 (23%), Positives = 122/276 (44%), Gaps = 6/276 (2%)

Query: 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDV 160
           Y +N ++D L K        + +  M K+ V   +  ++ +   Y +   V+ A   F V
Sbjct: 221 YTYNTLIDTLCKEGKVKESKNLLAVMTKKGVKPDVVIYSILMDGYCLVGEVQKAKQIFLV 280

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYAILLEGWEKERD 219
           M Q G   DV++ N +++ +C+  +  +A   LR ++   + PD  TY+ L++G  K   
Sbjct: 281 MVQTGVNPDVYSYNIIINGLCKGKRVDEAMNLLREMLHKNMIPDTVTYSSLIDGLCKLGR 340

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTF 279
           +        EM       P N+  Y+S L  L K    + + +    +M ERG  P    
Sbjct: 341 ITTILDLTKEM--HHRGQPANLVTYNSLLDGLCKN-QNLDKAIALFMKMKERGIQPNKYT 397

Query: 280 FKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEM 339
           +    +    G  L+  + ++  ++ + G+  D   Y +MIS  C       A+ +  +M
Sbjct: 398 YTALIDGLCKGGRLKKGQALFQHLLVK-GYCIDVWTYTVMISGLCKEGMFDEALAMKSKM 456

Query: 340 VYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
             NG  P+  T+ I+   L++  +  +A  L +EM+
Sbjct: 457 EDNGCIPNAVTFEIIIRSLLEKDENDKAEKLLHEMI 492


>gi|242071011|ref|XP_002450782.1| hypothetical protein SORBIDRAFT_05g018050 [Sorghum bicolor]
 gi|241936625|gb|EES09770.1| hypothetical protein SORBIDRAFT_05g018050 [Sorghum bicolor]
          Length = 528

 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 91/386 (23%), Positives = 153/386 (39%), Gaps = 19/386 (4%)

Query: 95  LNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDA 154
           +N +  P A++ VVD L +   FDA W  +     +   S  +FA +   YV A   + A
Sbjct: 114 VNTRPPPDAYDAVVDALARARQFDAAWRVVVDASADGAASPRSFAVLARRYVAAGMTRQA 173

Query: 155 ITTFDVMEQY-GCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEG 213
           +  FD ME + G + +     +LL  +C+      A +       +  P+   Y IL+ G
Sbjct: 174 VRAFDDMEAFVGREANSAEFATLLDTLCKYKYPKVATEIFNKRKYKYNPNEKMYTILIYG 233

Query: 214 WEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD---------GIYETVNS 264
           W K      A+K   +M ++ G +P N+  Y+  L  + +             ++   + 
Sbjct: 234 WCKVNRNDMARKFLKDM-LDHGIEP-NIVTYNILLNGICRHASLHPDYRFDRTVHSAEDV 291

Query: 265 LKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYC 324
           LK M +RG  P +T + +                ++ +M  R G  P    Y  +I    
Sbjct: 292 LKEMRDRGIEPDVTSYSIILHVYSRAHKPELCVCMFRSMKDR-GICPTVATYTSVIKCLA 350

Query: 325 YSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENV---- 380
                  A  LLDEMV  G  P   TYN  F+       +  A  L+N+M +  ++    
Sbjct: 351 SCGRLEDAETLLDEMVAEGVCPSPATYNCFFKEYRGRNDVSGALQLYNKMKQPGSLTAPD 410

Query: 381 LNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKY 440
           ++  N    + + ++       I  W  M E+      ++  LL+ G C      EA ++
Sbjct: 411 IHTYNILLGMFIKLNRHGSVKDI--WSDMCESTVGPDLDSYTLLIHGFCASQKWREACQF 468

Query: 441 AKGMAEKGIQVTPFALSKLKQILIKA 466
              M EKG          L + LI+A
Sbjct: 469 FMEMIEKGFLPQKITFETLYRGLIQA 494


>gi|147767583|emb|CAN60200.1| hypothetical protein VITISV_039678 [Vitis vinifera]
          Length = 525

 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 114/471 (24%), Positives = 189/471 (40%), Gaps = 35/471 (7%)

Query: 32  VPNLPPTIKT--LCEIIANTPSP--TVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKF 87
           +P+L P+     + +I+    +P   +E  L    I +S   V Q L    +    A+ F
Sbjct: 44  LPSLQPSYDADLISKILLQHHNPFHAMESSLQLNGIALSTHLVHQTLLRLRNVSKIALSF 103

Query: 88  FRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYV 146
           F W+  Q +  H   ++NL++D+L K   FD  W  I  M + ++  +  TF  +    V
Sbjct: 104 FLWAKDQAHHSHDVVSYNLIIDILAKVRQFDVAWQFIIEMDQNSLEPTSTTFRILIRRSV 163

Query: 147 VADRVKDAITTFDVMEQYGCKH-DVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDND 205
            A   + A+  FD M  +  K  D      LL  + + G    A Q       + + +  
Sbjct: 164 SAGLTRQAVRAFDDMSCFVEKDADSDDFCYLLDTLSKYGYVKLASQIFNQRKFKFEANAK 223

Query: 206 TYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD--------- 256
            Y IL+ GW K   V+ A++  GEMV E G    NV  Y+  L  + +            
Sbjct: 224 MYTILIYGWCKINRVSIAERLLGEMV-ERGJXA-NVVTYNVLLNGICRXASLHPDDRFER 281

Query: 257 GIYETVNSLKRMMERGCNPGMTFFKL-------AFEECLTGQNLRGAEFIWGAMVGRIGF 309
            I +    L  M + G  P +T + +       A +  LT   LR        M+   G 
Sbjct: 282 TIRDAEKVLDEMRQXGIEPDVTSYSIVIHVYSRAHKPELTLDKLR--------MMKDKGI 333

Query: 310 RPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWE-AS 368
            P    Y  ++   C       A +L+ +MV +G  P   TYN  F+   +GRK  + A 
Sbjct: 334 WPTVATYTSVVKCLCSCGRLEDAEELVSDMVKDGVSPSAATYNCFFK-EYRGRKDSDNAL 392

Query: 369 GLFNEMVKNENVL-NHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAG 427
            L+ +M +  + L +       V +++  +   +  + W  M  +      ++  LL+ G
Sbjct: 393 RLYRKMKEEYSCLPDMHTYNILVGMFVKLNRMEIVQEIWDDMKTSGAGPDLDSYTLLIHG 452

Query: 428 LCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKK 478
           LC+     EA  +   M EKG          L + LI++     +  L KK
Sbjct: 453 LCEKQKWKEACHFFVEMIEKGYLPQKITFETLYRGLIQSDMLKTWRRLKKK 503


>gi|356528166|ref|XP_003532676.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Glycine max]
          Length = 852

 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 87/390 (22%), Positives = 168/390 (43%), Gaps = 9/390 (2%)

Query: 63  IRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWD 122
           +R   E + ++ K   S  G A+ FF+          S + +N+V+  L +    +A   
Sbjct: 216 VRSCNELLHRLSK--SSKGGLALSFFK-DMVVAGLSPSVFTYNMVIGCLAREGDLEAARS 272

Query: 123 AIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAIC 181
             + MK + +   + T+ S+   Y     +  A++ F+ M+  GC+ DV   NSL++  C
Sbjct: 273 LFEEMKAKGLRPDIVTYNSLIDGYGKVGMLTGAVSVFEEMKDAGCEPDVITYNSLINCFC 332

Query: 182 RDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDN 240
           +  +   A+++L  +  R ++P+  TY+ L++ + K   +  A K F +M I VG  P+ 
Sbjct: 333 KFERIPQAFEYLHGMKQRGLQPNVVTYSTLIDAFCKAGMLLEANKFFVDM-IRVGLQPNE 391

Query: 241 VPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIW 300
              Y S +    K  D + E       M + G N  +  +    +       +R AE ++
Sbjct: 392 F-TYTSLIDANCKIGD-LNEAFKLESEMQQAGVNLNIVTYTALLDGLCEDGRMREAEELF 449

Query: 301 GAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVK 360
           GA++ + G+  +  +Y  +   Y  +     AM +L+EM      PD+  Y      L +
Sbjct: 450 GALL-KAGWTLNQQIYTSLFHGYIKAKMMEKAMDILEEMNKKNLKPDLLLYGTKIWGLCR 508

Query: 361 GRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSET 420
             ++ ++  +  EM+      N       +  Y        A+   + M +        T
Sbjct: 509 QNEIEDSMAVIREMMDCGLTANSYIYTTLIDAYFKVGKTTEAVNLLQEMQDLGIKITVVT 568

Query: 421 GNLLVAGLCDMHMLPEAVKYAKGMAEKGIQ 450
             +L+ GLC + ++ +AV+Y   M   G+Q
Sbjct: 569 YGVLIDGLCKIGLVQQAVRYFDHMTRNGLQ 598



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 49/201 (24%), Positives = 75/201 (37%), Gaps = 15/201 (7%)

Query: 273 CNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAA 332
           C PG   F   F   +    L  A   +  M  +    P     N ++     S++ G A
Sbjct: 177 CRPGFGVFDTLFNVLVDLGMLEEARQCFWKM-NKFRVLPKVRSCNELLHRLSKSSKGGLA 235

Query: 333 MKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRV 392
           +    +MV  G  P + TYN++   L +   L  A  LF EM         +  R  +  
Sbjct: 236 LSFFKDMVVAGLSPSVFTYNMVIGCLAREGDLEAARSLFEEM-------KAKGLRPDIVT 288

Query: 393 YMDSDDPY-------VAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMA 445
           Y    D Y        A+  ++ M +  C     T N L+   C    +P+A +Y  GM 
Sbjct: 289 YNSLIDGYGKVGMLTGAVSVFEEMKDAGCEPDVITYNSLINCFCKFERIPQAFEYLHGMK 348

Query: 446 EKGIQVTPFALSKLKQILIKA 466
           ++G+Q      S L     KA
Sbjct: 349 QRGLQPNVVTYSTLIDAFCKA 369



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 60/232 (25%), Positives = 98/232 (42%), Gaps = 14/232 (6%)

Query: 122 DAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAI 180
           D ++ M K+N+   L  + +        + ++D++     M   G   + +   +L+ A 
Sbjct: 482 DILEEMNKKNLKPDLLLYGTKIWGLCRQNEIEDSMAVIREMMDCGLTANSYIYTTLIDAY 541

Query: 181 CRDGKTIDAWQFLR-VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPD 239
            + GKT +A   L+ + D  IK    TY +L++G  K   V  A + F  M    G  P 
Sbjct: 542 FKVGKTTEAVNLLQEMQDLGIKITVVTYGVLIDGLCKIGLVQQAVRYFDHMT-RNGLQP- 599

Query: 240 NVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRG---- 295
           N+  Y + +  L K  D + E  N    M+++G +P     KL +   + G    G    
Sbjct: 600 NIMIYTALIDGLCKN-DCLEEAKNLFNEMLDKGISPD----KLVYTSLIDGNMKHGNPGE 654

Query: 296 AEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPD 347
           A  +   MV  IG   D   Y  +I  +    +   A  LLDEM+  G  PD
Sbjct: 655 ALSLRNRMV-EIGMELDLCAYTSLIWGFSRYGQVQLAKSLLDEMLRKGIIPD 705



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 52/241 (21%), Positives = 97/241 (40%), Gaps = 7/241 (2%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRV 195
           T+ S+  +      + +A      M+Q G   ++    +LL  +C DG+  +A + F  +
Sbjct: 393 TYTSLIDANCKIGDLNEAFKLESEMQQAGVNLNIVTYTALLDGLCEDGRMREAEELFGAL 452

Query: 196 VDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
           +      +   Y  L  G+ K + +  A     EM  +    PD +  Y + +  L +  
Sbjct: 453 LKAGWTLNQQIYTSLFHGYIKAKMMEKAMDILEEMN-KKNLKPD-LLLYGTKIWGLCRQ- 509

Query: 256 DGIYETVNSLKRMMERGCNPGMTFFKLAFEECL-TGQNLRGAEFIWGAMVGRIGFRPDTH 314
           + I +++  ++ MM+ G       +    +     G+       +    +  +G +    
Sbjct: 510 NEIEDSMAVIREMMDCGLTANSYIYTTLIDAYFKVGKTTEAVNLL--QEMQDLGIKITVV 567

Query: 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
            Y ++I   C       A++  D M  NG  P+I  Y  L + L K   L EA  LFNEM
Sbjct: 568 TYGVLIDGLCKIGLVQQAVRYFDHMTRNGLQPNIMIYTALIDGLCKNDCLEEAKNLFNEM 627

Query: 375 V 375
           +
Sbjct: 628 L 628



 Score = 40.4 bits (93), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 60/279 (21%), Positives = 112/279 (40%), Gaps = 23/279 (8%)

Query: 110 LLGKNCLFDAMWDAIK---SMKKENV-LSLATFASVFSSYVVADRVKDAITTFDVMEQYG 165
           L+  NC    + +A K    M++  V L++ T+ ++        R+++A   F  + + G
Sbjct: 397 LIDANCKIGDLNEAFKLESEMQQAGVNLNIVTYTALLDGLCEDGRMREAEELFGALLKAG 456

Query: 166 CKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVANAK 224
              +     SL     +      A   L  ++ + +KPD   Y   + G  ++ ++ ++ 
Sbjct: 457 WTLNQQIYTSLFHGYIKAKMMEKAMDILEEMNKKNLKPDLLLYGTKIWGLCRQNEIEDSM 516

Query: 225 KTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIY------ETVNSLKRMMERGCNPGMT 278
               EM+       D     +SY+ T L   D  +      E VN L+ M + G    + 
Sbjct: 517 AVIREMM-------DCGLTANSYIYTTL--IDAYFKVGKTTEAVNLLQEMQDLGIKITVV 567

Query: 279 FFKLAFEE-CLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLD 337
            + +  +  C  G   +   +     + R G +P+  +Y  +I   C ++    A  L +
Sbjct: 568 TYGVLIDGLCKIGLVQQAVRYF--DHMTRNGLQPNIMIYTALIDGLCKNDCLEEAKNLFN 625

Query: 338 EMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK 376
           EM+  G  PD   Y  L +  +K     EA  L N MV+
Sbjct: 626 EMLDKGISPDKLVYTSLIDGNMKHGNPGEALSLRNRMVE 664


>gi|297843788|ref|XP_002889775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335617|gb|EFH66034.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 598

 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 81/336 (24%), Positives = 146/336 (43%), Gaps = 42/336 (12%)

Query: 138 FASVFSSYVVAD--------------RVKDAITTFDVMEQYGCKHDVFALNSLLSAICRD 183
           F+S  SS+V+ D               +++     + M  +G   D+    +L+   CR 
Sbjct: 91  FSSANSSFVLEDVESNNHLRQLVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRM 150

Query: 184 GKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVP 242
           GKT  A + L V++G    PD  TY +++ G+ K  ++ NA      M +     PD V 
Sbjct: 151 GKTRKAAKILEVLEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRMSVS----PD-VV 205

Query: 243 AYDSYLITLLKGCDG--IYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIW 300
            Y++ L +L   CD   + + +  L RM++R C P +  + +  E       +  A  + 
Sbjct: 206 TYNTILRSL---CDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGQAMKLL 262

Query: 301 GAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVK 360
             M  R G  PD   YN++++  C       A+K L++M  +G  P++ T+NI+   +  
Sbjct: 263 DEMRDR-GCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCS 321

Query: 361 GRKLWEASGLFNEMVKNE--------NVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIEN 412
             +  +A  L  +M++          N+L +  CR  +           AI   + M ++
Sbjct: 322 TGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGR--------AIDILEKMPKH 373

Query: 413 HCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448
            C   S + N L+ G C    +  A++Y + M  +G
Sbjct: 374 GCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRG 409



 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 83/344 (24%), Positives = 140/344 (40%), Gaps = 23/344 (6%)

Query: 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL- 193
           + T+ ++  S   + ++K A+   D M Q  C  DV     L+ A CRD     A + L 
Sbjct: 204 VVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGQAMKLLD 263

Query: 194 RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLK 253
            + D    PD  TY +L+ G  KE  +  A K   +M    G  P+ +    ++ I L  
Sbjct: 264 EMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMP-SSGCQPNVI----THNIILRS 318

Query: 254 GCDGI--YETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRP 311
            C      +    L  M+ +G +P +  F +     L  + L G        + + G +P
Sbjct: 319 MCSTGRWMDAEKLLADMLRKGFSPSVVTFNILIN-FLCRKGLLGRAIDILEKMPKHGCQP 377

Query: 312 DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLF 371
           ++  YN ++  +C   +   A++ L+ MV  G +PDI TYN +   L K  K+ +A  + 
Sbjct: 378 NSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEIL 437

Query: 372 NEMVKNENVLNHENCRAAVRVYMDSDDPYV-------AIKFWKYMIENHCSDLSETGNLL 424
           N+       L+ + C   +  Y    D          AIK    M        + T + L
Sbjct: 438 NQ-------LSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSL 490

Query: 425 VAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARK 468
           V GL     + EA+K+       G++      + +   L K R+
Sbjct: 491 VGGLSREGKVDEAIKFFHEFERMGVRPNAVTFNSIMLGLCKTRQ 534



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 86/338 (25%), Positives = 143/338 (42%), Gaps = 46/338 (13%)

Query: 151 VKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYAI 209
           V  A+   D M   GC  DV   N L++ IC++G+  +A +FL  +     +P+  T+ I
Sbjct: 255 VGQAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNI 314

Query: 210 LLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL--KGCDGIYETVNSLKR 267
           +L          +A+K   +M +  G+ P  V    + LI  L  KG  G    ++ L++
Sbjct: 315 ILRSMCSTGRWMDAEKLLADM-LRKGFSPSVVTF--NILINFLCRKGLLG--RAIDILEK 369

Query: 268 MMERGCNP-GMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYS 326
           M + GC P  +++  L    C   +  R  E++   MV R G  PD   YN M++  C  
Sbjct: 370 MPKHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLE-RMVSR-GCYPDIVTYNTMLTALCKD 427

Query: 327 NETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM------------ 374
            +   A+++L+++   G  P + TYN + + L K  K  +A  L +EM            
Sbjct: 428 GKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITY 487

Query: 375 ------VKNENVLN------HENCRAAVRVYMDSDDPYV-----------AIKFWKYMIE 411
                 +  E  ++      HE  R  VR    + +  +           AI F  YMI 
Sbjct: 488 SSLVGGLSREGKVDEAIKFFHEFERMGVRPNAVTFNSIMLGLCKTRQTDRAIDFLVYMIN 547

Query: 412 NHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
             C     +  +L+ GL    M  EA++    +  KG+
Sbjct: 548 RGCKPTETSYTILIEGLAYEGMAKEALELLNELCNKGL 585



 Score = 43.1 bits (100), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 63/142 (44%), Gaps = 5/142 (3%)

Query: 94  QLNDKH-SPY--AWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVAD 149
           QL+ K  SP    +N V+D L K          +  M+ +++     T++S+        
Sbjct: 439 QLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREG 498

Query: 150 RVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYA 208
           +V +AI  F   E+ G + +    NS++  +C+  +T  A  FL  +  R  KP   +Y 
Sbjct: 499 KVDEAIKFFHEFERMGVRPNAVTFNSIMLGLCKTRQTDRAIDFLVYMINRGCKPTETSYT 558

Query: 209 ILLEGWEKERDVANAKKTFGEM 230
           IL+EG   E     A +   E+
Sbjct: 559 ILIEGLAYEGMAKEALELLNEL 580


>gi|334183602|ref|NP_176522.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806282|sp|Q9C8T7.2|PP101_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63330
 gi|332195966|gb|AEE34087.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 559

 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 79/333 (23%), Positives = 149/333 (44%), Gaps = 5/333 (1%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           TF ++     + ++  +A+   D M Q GC+ ++     +++ +C+ G    A+  L  +
Sbjct: 117 TFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKM 176

Query: 197 DG-RIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
           +  +I+ D   +  +++   K R V +A   F EM  + G  P NV  Y S LI+ L   
Sbjct: 177 EAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETK-GIRP-NVVTYSS-LISCLCSY 233

Query: 256 DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHM 315
               +    L  M+E+  NP +  F    +  +       AE +   M+ R    PD   
Sbjct: 234 GRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKR-SIDPDIFT 292

Query: 316 YNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
           YN +I+ +C  +    A ++ + MV    FPD+ TYN L +   K +++ + + LF EM 
Sbjct: 293 YNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMS 352

Query: 376 KNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLP 435
               V +       ++      D   A K +K M+ +       T ++L+ GLC+   L 
Sbjct: 353 HRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLE 412

Query: 436 EAVKYAKGMAEKGIQVTPFALSKLKQILIKARK 468
           +A++    M +  I++  +  + + + + KA K
Sbjct: 413 KALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGK 445



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 100/405 (24%), Positives = 159/405 (39%), Gaps = 91/405 (22%)

Query: 104 WNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVME 162
           +N ++D L K    D   +  K M+ + +  ++ T++S+ S      R  DA      M 
Sbjct: 188 FNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMI 247

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERDVA 221
           +     ++   N+L+ A  ++GK ++A +    ++   I PD  TY  L+ G+     + 
Sbjct: 248 EKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLD 307

Query: 222 NAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG-CDGIYETVNSLKRMMERGCNPGMTFF 280
            AK+ F  MV       D  P  D+Y  TL+KG C          KR+ +     G   F
Sbjct: 308 KAKQMFEFMV-----SKDCFPDLDTY-NTLIKGFCKS--------KRVED-----GTELF 348

Query: 281 KLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMV 340
           +               E     +VG      DT  Y  +I    +  +   A K+  +MV
Sbjct: 349 R---------------EMSHRGLVG------DTVTYTTLIQGLFHDGDCDNAQKVFKQMV 387

Query: 341 YNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPY 400
            +G  PDI TY+IL + L    KL +A  +F+ M K+E  L+                  
Sbjct: 388 SDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLD------------------ 429

Query: 401 VAIKFWKYMIENHCS------------DLSETG--------NLLVAGLCDMHMLPEAVKY 440
             I  +  MIE  C              LS  G        N +++GLC   +L EA   
Sbjct: 430 --IYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYAL 487

Query: 441 AKGMAEKGIQVTPFALSKLKQILIKAR----KEAVYEELLKKCKA 481
            K M E G    P   S     LI+A      +A   EL+++ ++
Sbjct: 488 LKKMKEDG----PLPDSGTYNTLIRAHLRDGDKAASAELIREMRS 528



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 52/221 (23%), Positives = 92/221 (41%), Gaps = 11/221 (4%)

Query: 265 LKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYC 324
           L +MM+ G  P +            G+ +  A  +   MV  +G+RPDT  +  +I    
Sbjct: 68  LGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMV-EMGYRPDTITFTTLIHGLF 126

Query: 325 YSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNE---NVL 381
             N+   A+ L+D MV  G  P++ TY ++   L K   +  A  L N+M   +   +V+
Sbjct: 127 LHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVV 186

Query: 382 NHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYA 441
                  ++  Y   DD   A+  +K M          T + L++ LC      +A +  
Sbjct: 187 IFNTIIDSLCKYRHVDD---ALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLL 243

Query: 442 KGMAEKGIQVTPFALSKLKQILIKARK----EAVYEELLKK 478
             M EK I       + L    +K  K    E ++++++K+
Sbjct: 244 SDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKR 284



 Score = 44.3 bits (103), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 29/130 (22%), Positives = 58/130 (44%)

Query: 300 WGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLV 359
            G  + R+G   + + YN++I+ +C  ++   A+ LL +M+  G  P I T + L     
Sbjct: 32  LGEKMQRLGISHNLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYC 91

Query: 360 KGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSE 419
            G+++ +A  L ++MV+     +       +      +    A+     M++  C     
Sbjct: 92  HGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLV 151

Query: 420 TGNLLVAGLC 429
           T  ++V GLC
Sbjct: 152 TYGVVVNGLC 161


>gi|334183590|ref|NP_176479.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75179661|sp|Q9LQ16.1|PPR94_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62910
 gi|8493578|gb|AAF75801.1|AC011000_4 Contains a RepB PF|01051 protein domain and multiple PPR PF|01535
           repeats [Arabidopsis thaliana]
 gi|332195899|gb|AEE34020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 632

 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 76/303 (25%), Positives = 137/303 (45%), Gaps = 5/303 (1%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           TF ++     + ++  +A+   D M Q GC+ D+    ++++ +C+ G    A   L+ +
Sbjct: 190 TFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKM 249

Query: 197 D-GRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
           + G+I+ D   Y  +++G  K + + +A   F EM  + G  PD V  Y S LI+ L   
Sbjct: 250 EKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNK-GIRPD-VFTYSS-LISCLCNY 306

Query: 256 DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHM 315
               +    L  M+ER  NP +  F    +  +    L  AE ++  M+ R    PD   
Sbjct: 307 GRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKR-SIDPDIFT 365

Query: 316 YNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
           Y+ +I+ +C  +    A  + + M+    FP++ TY+ L +   K +++ E   LF EM 
Sbjct: 366 YSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMS 425

Query: 376 KNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLP 435
           +   V N       +  +  + D   A   +K M+         T N+L+ GLC    L 
Sbjct: 426 QRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLA 485

Query: 436 EAV 438
           +A+
Sbjct: 486 KAM 488



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 96/387 (24%), Positives = 161/387 (41%), Gaps = 50/387 (12%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVLS-LATFASVFSSYVVADRVKDAITTFDVM 161
            +  VV+ L K    D     +K M+K  + + +  + ++         + DA+  F  M
Sbjct: 225 TYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEM 284

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYAILLEGWEKERDV 220
           +  G + DVF  +SL+S +C  G+  DA + L  +++ +I P+  T++ L++ + KE  +
Sbjct: 285 DNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKL 344

Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFF 280
             A+K + EM I+   DPD +  Y S LI      D + E  +  + M+ + C P +  +
Sbjct: 345 VEAEKLYDEM-IKRSIDPD-IFTYSS-LINGFCMHDRLDEAKHMFELMISKDCFPNVVTY 401

Query: 281 KLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMV 340
               +     + +     ++  M  R G   +T  Y  +I  +  + +   A  +  +MV
Sbjct: 402 STLIKGFCKAKRVEEGMELFREMSQR-GLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMV 460

Query: 341 YNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPY 400
             G  P+I TYNIL + L K  KL +A  +F  +                R  M+ D   
Sbjct: 461 SVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYL---------------QRSTMEPD--- 502

Query: 401 VAIKFWKYMIENHCS------------DLSETG--------NLLVAGLCDMHMLPEAVKY 440
             I  +  MIE  C             +LS  G        N +++G C      EA   
Sbjct: 503 --IYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSL 560

Query: 441 AKGMAEKGIQVTPFALSKLKQILIKAR 467
            K M E G    P   S     LI+AR
Sbjct: 561 LKKMKEDG----PLPNSGTYNTLIRAR 583



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 83/401 (20%), Positives = 163/401 (40%), Gaps = 47/401 (11%)

Query: 105 NLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQY 164
           N + D++  +   D   D +KS       S+  F  + S+    ++ +  I+  + M+  
Sbjct: 56  NRLSDIIKVDDAVDLFGDMVKS---RPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTL 112

Query: 165 GCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERDVANA 223
           G  HD++  +  ++  CR  +   A   L +++    +PD  T + LL G+   + +++A
Sbjct: 113 GISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDA 172

Query: 224 KKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC---DGIYETVNSLKRMMERGCNPGMTFF 280
                +MV E+G+ PD          TL+ G    +   E V  + +M++RGC P +  +
Sbjct: 173 VALVDQMV-EMGYKPDTFT-----FTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTY 226

Query: 281 ---------------KLAFEECLTGQNLRGAEFIWGAMVGRI------------------ 307
                           L+  + +    +     I+  ++  +                  
Sbjct: 227 GTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDN 286

Query: 308 -GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWE 366
            G RPD   Y+ +IS  C       A +LL +M+     P++ T++ L +  VK  KL E
Sbjct: 287 KGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVE 346

Query: 367 ASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVA 426
           A  L++EM+K     +     + +  +   D    A   ++ MI   C     T + L+ 
Sbjct: 347 AEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIK 406

Query: 427 GLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKAR 467
           G C    + E ++  + M+++G+       + L     +AR
Sbjct: 407 GFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQAR 447



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/240 (24%), Positives = 106/240 (44%), Gaps = 7/240 (2%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           T++S+ + + + DR+ +A   F++M    C  +V   ++L+   C+  +  +  +  R +
Sbjct: 365 TYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREM 424

Query: 197 DGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
             R +  +  TY  L+ G+ + RD  NA+  F +MV  VG  P N+  Y+  L  L K  
Sbjct: 425 SQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMV-SVGVHP-NILTYNILLDGLCKN- 481

Query: 256 DGIYETVNSLKRMMERGCNPGMTFFKLAFEE-CLTGQNLRGAEFIWGAMVGRIGFRPDTH 314
             + + +   + +      P +  + +  E  C  G+   G E      +   G  P+  
Sbjct: 482 GKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLK--GVSPNVI 539

Query: 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
            YN MIS +C       A  LL +M  +G  P+  TYN L    ++      ++ L  EM
Sbjct: 540 AYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRARLRDGDREASAELIKEM 599


>gi|225451352|ref|XP_002274891.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 577

 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 66/250 (26%), Positives = 117/250 (46%), Gaps = 5/250 (2%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           ++ATF ++     V  ++ + +  FD M   G + +V    +L++ +C+ G T  A + L
Sbjct: 128 NIATFNTLIRGLCVEGKIGEVLHLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLL 187

Query: 194 RVVD-GRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
           R ++ G  +PD   Y  +++   K+R V  A   F EM I  G  P ++  Y+S +  L 
Sbjct: 188 RSMEQGNCQPDVVVYTSIIDSLCKDRQVTQAFNLFSEM-IHQGISP-SIFTYNSLIHALC 245

Query: 253 KGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD 312
             C+  + T   L  M+     P +  F    +       +  A  +   M+ R G  P+
Sbjct: 246 NLCEWKHVTA-LLNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKR-GVEPN 303

Query: 313 THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFN 372
              YN ++  +C  +E   A+K+ D MV  G  PD+ +Y+ L     K +++ +A  LF 
Sbjct: 304 VVTYNALMDGHCLRSEMDEAVKVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFE 363

Query: 373 EMVKNENVLN 382
           EM + E + N
Sbjct: 364 EMCRKELIPN 373



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 75/336 (22%), Positives = 140/336 (41%), Gaps = 12/336 (3%)

Query: 100 SPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTF 158
           S + +N ++  L   C +  +   +  M    ++ ++  F++V  +     +V +A    
Sbjct: 233 SIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVV 292

Query: 159 DVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKE 217
           D+M + G + +V   N+L+   C   +  +A + F  +V     PD  +Y+ L+ G+ K 
Sbjct: 293 DMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVCKGFAPDVVSYSTLINGYCKI 352

Query: 218 RDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG---CDGIYETVNSLKRMMERGCN 274
           + +  A   F EM        + +P   +Y  TL+ G      + + +     M+ RG  
Sbjct: 353 QRIEKAMYLFEEM-----CRKELIPNTVTY-STLMHGLCHVGRLQDAIALFHEMVTRGQI 406

Query: 275 PGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMK 334
           P    + +  +     + L  A  +  A+ G     PD  +Y ++I   C + E  AA  
Sbjct: 407 PDFVSYCILLDYLCKNRRLDEAIALLKAIEGS-NMDPDIQIYTIVIDGMCRAGELEAARD 465

Query: 335 LLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYM 394
           L   +   G  P++ TY I+   L +   L EAS LF EM +     N        R ++
Sbjct: 466 LFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEASKLFGEMKRKGYSPNGCTYNLITRGFL 525

Query: 395 DSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCD 430
            +++    I+  + M+    S    T  +LV  L D
Sbjct: 526 RNNETLRGIQLLQEMLARGFSADVSTSTVLVEMLSD 561



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 58/112 (51%), Gaps = 3/112 (2%)

Query: 265 LKRMMERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLY 323
           L ++++ G  P + TF  L    C+ G+ +     ++  M+G  GF+P+   Y  +I+  
Sbjct: 117 LAKILKLGHQPNIATFNTLIRGLCVEGK-IGEVLHLFDKMIGE-GFQPNVVTYGTLINGL 174

Query: 324 CYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
           C    T AA++LL  M      PD+  Y  + + L K R++ +A  LF+EM+
Sbjct: 175 CKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTQAFNLFSEMI 226



 Score = 46.2 bits (108), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 34/156 (21%), Positives = 63/156 (40%)

Query: 308 GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEA 367
           G  P+ +  N++I+ +C+    G A  +L +++  G  P+I T+N L   L    K+ E 
Sbjct: 89  GIPPNIYTLNILINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEV 148

Query: 368 SGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAG 427
             LF++M+      N       +           AI+  + M + +C         ++  
Sbjct: 149 LHLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDS 208

Query: 428 LCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQIL 463
           LC    + +A      M  +GI  + F  + L   L
Sbjct: 209 LCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHAL 244


>gi|346703131|emb|CBX25230.1| hypothetical_protein [Oryza brachyantha]
          Length = 746

 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 86/335 (25%), Positives = 134/335 (40%), Gaps = 42/335 (12%)

Query: 136 ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR- 194
            TF ++   +V    +K A+     M + GC      +N L++  C+ G+  DA  +++ 
Sbjct: 221 TTFTTLMQGFVEEGSIKAALRVKARMLEMGCSPTKVTVNVLINGYCKLGRVEDALGYIQQ 280

Query: 195 -VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLK 253
            + +G  +PD  TY   + G  +   V +A K    MV E G DPD V  Y+  +  L K
Sbjct: 281 EIANG-FEPDQITYNTFVNGLCQNGHVGHALKVMDVMVQE-GHDPD-VFTYNIVVNCLCK 337

Query: 254 GCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDT 313
               + E    L +M+ERGC P +T F        +G  L  A       V   G  PD 
Sbjct: 338 NGQ-LEEAKGILNQMVERGCLPDITTFNTLIVALCSGNRLEEA-LDLARQVTLKGLSPDV 395

Query: 314 HMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNE 373
           + +N++I+  C   +   A++L +EM  +G  PD  TYN L + L    KL +A  L  E
Sbjct: 396 YTFNILINALCKVGDPQLALRLFEEMKSSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKE 455

Query: 374 MVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHM 433
           M                                       C   + T N ++ GLC    
Sbjct: 456 MESA-----------------------------------GCPRSTVTYNTIIDGLCKKMR 480

Query: 434 LPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARK 468
           + EA +    M  +GI       + L   L K ++
Sbjct: 481 IEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKR 515



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 82/349 (23%), Positives = 133/349 (38%), Gaps = 77/349 (22%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
            +  + +  V   ++K   T +  M + G K DV   N+L+ A+CR  +   A   L  +
Sbjct: 152 VYNHLLNVLVEGSKMKLLETVYSEMGERGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEM 211

Query: 197 DGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
               + PD  T+  L++G+ +E  +  A +                              
Sbjct: 212 SSSGVAPDETTFTTLMQGFVEEGSIKAALRVKA--------------------------- 244

Query: 256 DGIYETVNSLKRMMERGCNPG-MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTH 314
                      RM+E GC+P  +T   L    C  G+      +I   +    GF PD  
Sbjct: 245 -----------RMLEMGCSPTKVTVNVLINGYCKLGRVEDALGYIQQEIAN--GFEPDQI 291

Query: 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
            YN  ++  C +   G A+K++D MV  G  PD+ TYNI+   L K  +L EA G+ N+M
Sbjct: 292 TYNTFVNGLCQNGHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQM 351

Query: 375 VKNE--------NVLNHENCRA---------AVRVYMDS------------------DDP 399
           V+          N L    C           A +V +                     DP
Sbjct: 352 VERGCLPDITTFNTLIVALCSGNRLEEALDLARQVTLKGLSPDVYTFNILINALCKVGDP 411

Query: 400 YVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448
            +A++ ++ M  + C+    T N L+  LC +  L +A+   K M   G
Sbjct: 412 QLALRLFEEMKSSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKEMESAG 460



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 68/300 (22%), Positives = 119/300 (39%), Gaps = 11/300 (3%)

Query: 79  SHPGPAVKFFRWSAYQLNDKHSP--YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SL 135
            H G A+K        + + H P  + +N+VV+ L KN   +     +  M +   L  +
Sbjct: 304 GHVGHALKVMD---VMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVERGCLPDI 360

Query: 136 ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLR 194
            TF ++  +    +R+++A+     +   G   DV+  N L++A+C+ G    A + F  
Sbjct: 361 TTFNTLIVALCSGNRLEEALDLARQVTLKGLSPDVYTFNILINALCKVGDPQLALRLFEE 420

Query: 195 VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG 254
           +      PD  TY  L++       +  A     EM  E    P +   Y++ +  L K 
Sbjct: 421 MKSSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKEM--ESAGCPRSTVTYNTIIDGLCKK 478

Query: 255 CDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTH 314
              I E      +M  +G +     F    +     + +  A  +   M+   G +P+  
Sbjct: 479 MR-IEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKRIDDANQLISQMISE-GLQPNNI 536

Query: 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
            YN +++ YC   +   A  +L  M  NG   D+ TY  L   L K  +   A  L   M
Sbjct: 537 TYNSILTHYCKQGDIKKAADILQTMTANGFEVDVVTYGTLINGLCKAGRTQVALKLLRGM 596



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 61/242 (25%), Positives = 105/242 (43%), Gaps = 8/242 (3%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           T+ ++  +     ++  A+     ME  GC       N+++  +C+  +  +A +    +
Sbjct: 432 TYNTLIDNLCSLGKLGKALDLLKEMESAGCPRSTVTYNTIIDGLCKKMRIEEAEEVFDQM 491

Query: 197 DGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
           D + I  +  T+  L++G  K++ + +A +   +M+ E G  P+N+  Y+S L    K  
Sbjct: 492 DLQGISRNAITFNTLIDGLCKDKRIDDANQLISQMISE-GLQPNNI-TYNSILTHYCKQG 549

Query: 256 DGIYETVNSLKRMMERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTH 314
           D I +  + L+ M   G    + T+  L    C  G+     + + G  +   G R    
Sbjct: 550 D-IKKAADILQTMTANGFEVDVVTYGTLINGLCKAGRTQVALKLLRGMRIK--GMRATPK 606

Query: 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVK-GRKLWEASGLFNE 373
            YN +I      N T  AM L  EM   G  PD  TY I+F  L + G  + EA     E
Sbjct: 607 AYNPVIQSLFRRNNTRDAMNLFREMTEVGEPPDAFTYKIVFRGLCRGGGSIREAFDFLLE 666

Query: 374 MV 375
           MV
Sbjct: 667 MV 668



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 35/147 (23%), Positives = 68/147 (46%), Gaps = 8/147 (5%)

Query: 308 GFRPDTHMYNMMISLYCYSNETGAAMKLLD----EMVYNGAFPDIQTYNILFEFLVKGRK 363
           G + DT +YN ++++       G+ MKLL+    EM   G  PD+ T+N L + L +  +
Sbjct: 145 GIQADTVVYNHLLNVLV----EGSKMKLLETVYSEMGERGIKPDVVTFNTLMKALCRAHQ 200

Query: 364 LWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNL 423
           +  A  +  EM  +    +       ++ +++      A++    M+E  CS    T N+
Sbjct: 201 VRTAVLMLEEMSSSGVAPDETTFTTLMQGFVEEGSIKAALRVKARMLEMGCSPTKVTVNV 260

Query: 424 LVAGLCDMHMLPEAVKYAKGMAEKGIQ 450
           L+ G C +  + +A+ Y +     G +
Sbjct: 261 LINGYCKLGRVEDALGYIQQEIANGFE 287


>gi|224130706|ref|XP_002328356.1| predicted protein [Populus trichocarpa]
 gi|222838071|gb|EEE76436.1| predicted protein [Populus trichocarpa]
          Length = 613

 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 86/363 (23%), Positives = 149/363 (41%), Gaps = 27/363 (7%)

Query: 115 CLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALN 174
           C+ DA+    + ++     S+  F     S+    +    ++  + M+ +   H+V++LN
Sbjct: 73  CVDDALASFYRMVRINPRPSVVEFGKFLGSFAKKKQYSTVVSLCNQMDLFRVTHNVYSLN 132

Query: 175 SLLSAICRDGKTIDAWQFLRVVDGR-----IKPDNDTYAILLEGWEKERDVANAKKTFGE 229
            L++ +CR    ++   F   V G+     I PD  T+  L+ G   E  +  A + F E
Sbjct: 133 ILINCLCR----LNHVDFSVSVLGKMFKLGIHPDAITFNALINGLCNEGKIKEAVELFNE 188

Query: 230 MVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLT 289
           MV + G +P NV +Y + +  L K        V+  K+M + GC P +  +    +    
Sbjct: 189 MV-KRGHEP-NVISYTTVINGLCK-TGNTSMAVDVFKKMEQNGCKPNVVTYSTIIDSLCK 245

Query: 290 GQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQ 349
            + +  A      MV R G  P+   YN ++  +C   +   A +L  EMV     P+  
Sbjct: 246 DRLVNDAMEFLSEMVER-GIPPNVFTYNSIVHGFCNLGQLNEATRLFKEMVGRDVMPNTV 304

Query: 350 TYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYV-------A 402
           T+ IL + L K   + EA  +F  M +       +     +  Y    D Y        A
Sbjct: 305 TFTILVDGLCKEGMVSEARLVFETMTE-------KGVEPDISTYNALMDGYCLQRLMNEA 357

Query: 403 IKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQI 462
            K ++ MI   C+  + + N+L+ G C    + EA      M  K +       S L Q 
Sbjct: 358 KKVFEIMIRKGCAPGAHSYNILINGYCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQG 417

Query: 463 LIK 465
           L +
Sbjct: 418 LCQ 420



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 95/366 (25%), Positives = 157/366 (42%), Gaps = 50/366 (13%)

Query: 116 LFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNS 175
           LF+ M   +K   + NV+S   + +V +          A+  F  MEQ GCK +V   ++
Sbjct: 185 LFNEM---VKRGHEPNVIS---YTTVINGLCKTGNTSMAVDVFKKMEQNGCKPNVVTYST 238

Query: 176 LLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEV 234
           ++ ++C+D    DA +FL  +V+  I P+  TY  ++ G+     +  A + F EMV   
Sbjct: 239 IIDSLCKDRLVNDAMEFLSEMVERGIPPNVFTYNSIVHGFCNLGQLNEATRLFKEMV--- 295

Query: 235 GWDPDNVPAYDSYLITLLKGC-DG-IYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQN 292
               D +P   ++ I +   C +G + E     + M E+G  P ++ +    +     + 
Sbjct: 296 --GRDVMPNTVTFTILVDGLCKEGMVSEARLVFETMTEKGVEPDISTYNALMDGYCLQRL 353

Query: 293 LRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYN 352
           +  A+ ++  M+ R G  P  H YN++I+ YC S     A  LL EM +    PD  TY+
Sbjct: 354 MNEAKKVFEIMI-RKGCAPGAHSYNILINGYCKSRRMDEAKSLLAEMYHKALNPDTVTYS 412

Query: 353 ILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIEN 412
            L + L +  +  EA  LF EM                     S  P+  +    Y+I  
Sbjct: 413 TLMQGLCQLGRPKEALNLFKEMC--------------------SYGPHPNL--VTYVI-- 448

Query: 413 HCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVY 472
                      L+ G C    L EA+K  K M EK ++      + L + +  A K  V 
Sbjct: 449 -----------LLDGFCKHGHLDEALKLLKSMKEKKLEPNIVHYTILIEGMFIAGKLEVA 497

Query: 473 EELLKK 478
           +EL  K
Sbjct: 498 KELFSK 503



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 62/279 (22%), Positives = 117/279 (41%), Gaps = 11/279 (3%)

Query: 136 ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRV 195
            TF  +         V +A   F+ M + G + D+   N+L+   C      +A +   +
Sbjct: 304 VTFTILVDGLCKEGMVSEARLVFETMTEKGVEPDISTYNALMDGYCLQRLMNEAKKVFEI 363

Query: 196 -VDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG 254
            +     P   +Y IL+ G+ K R +  AK    EM      +PD V  Y     TL++G
Sbjct: 364 MIRKGCAPGAHSYNILINGYCKSRRMDEAKSLLAEMY-HKALNPDTV-TYS----TLMQG 417

Query: 255 CDGI---YETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRP 311
              +    E +N  K M   G +P +  + +  +      +L  A  +  +M  +    P
Sbjct: 418 LCQLGRPKEALNLFKEMCSYGPHPNLVTYVILLDGFCKHGHLDEALKLLKSMKEK-KLEP 476

Query: 312 DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLF 371
           +   Y ++I     + +   A +L  ++  +G  PDI+TY ++ + L+K     EA  LF
Sbjct: 477 NIVHYTILIEGMFIAGKLEVAKELFSKLFGDGTRPDIRTYTVMIKGLLKEGLSDEAYDLF 536

Query: 372 NEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMI 410
            +M  +  + N  +    ++ ++ + D   AI+    M+
Sbjct: 537 RKMEDDGFLPNSCSYNVMIQGFLQNQDSSTAIRLIDEMV 575



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 59/293 (20%), Positives = 118/293 (40%), Gaps = 43/293 (14%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVM 161
            + ++VD L K  +        ++M ++ V   ++T+ ++   Y +   + +A   F++M
Sbjct: 305 TFTILVDGLCKEGMVSEARLVFETMTEKGVEPDISTYNALMDGYCLQRLMNEAKKVFEIM 364

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERDV 220
            + GC     + N L++  C+  +  +A   L  +    + PD  TY+ L++G  +    
Sbjct: 365 IRKGCAPGAHSYNILINGYCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQLGRP 424

Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIY--ETVNSLKRMMERGCNPGMT 278
             A   F EM     + P   P   +Y+I L   C   +  E +  LK M E+   P + 
Sbjct: 425 KEALNLFKEMC---SYGPH--PNLVTYVILLDGFCKHGHLDEALKLLKSMKEKKLEPNIV 479

Query: 279 FFKLAFEECLTGQNLRGAEFIWGAMVGRI------------------------------- 307
            + +  E       L  A+ ++  + G                                 
Sbjct: 480 HYTILIEGMFIAGKLEVAKELFSKLFGDGTRPDIRTYTVMIKGLLKEGLSDEAYDLFRKM 539

Query: 308 ---GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEF 357
              GF P++  YN+MI  +  + ++  A++L+DEMV      ++ T+ +L + 
Sbjct: 540 EDDGFLPNSCSYNVMIQGFLQNQDSSTAIRLIDEMVGKRFSVNLSTFQMLLDL 592



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 46/191 (24%), Positives = 78/191 (40%), Gaps = 19/191 (9%)

Query: 299 IWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFL 358
           + G M  ++G  PD   +N +I+  C   +   A++L +EMV  G  P++ +Y  +   L
Sbjct: 150 VLGKMF-KLGIHPDAITFNALINGLCNEGKIKEAVELFNEMVKRGHEPNVISYTTVINGL 208

Query: 359 VKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYV-------AIKFWKYMIE 411
            K      A  +F +M +N        C+  V  Y    D          A++F   M+E
Sbjct: 209 CKTGNTSMAVDVFKKMEQN-------GCKPNVVTYSTIIDSLCKDRLVNDAMEFLSEMVE 261

Query: 412 NHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIK----AR 467
                   T N +V G C++  L EA +  K M  + +       + L   L K    + 
Sbjct: 262 RGIPPNVFTYNSIVHGFCNLGQLNEATRLFKEMVGRDVMPNTVTFTILVDGLCKEGMVSE 321

Query: 468 KEAVYEELLKK 478
              V+E + +K
Sbjct: 322 ARLVFETMTEK 332


>gi|168049795|ref|XP_001777347.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162671323|gb|EDQ57877.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 621

 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 79/279 (28%), Positives = 127/279 (45%), Gaps = 6/279 (2%)

Query: 98  KHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKEN-VLSLATFASVFSSYVVADRVKDAIT 156
           K + + +N +VD LGK   FD     +  M+    V  + T+  + S+   A R+ +A T
Sbjct: 76  KPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLISTLGKAGRLSEAFT 135

Query: 157 TFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWE 215
            F  M + GC  D F  NSL+  + + G++  A + L  ++     PD  TY+ L+ G  
Sbjct: 136 LFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHGCPPDVMTYSSLITGLG 195

Query: 216 KERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNP 275
           K+ +   A K F EM    G  PD++    + L+  L     + + +  L  M ERG  P
Sbjct: 196 KDGETVKAFKLFQEMK-RRGRKPDSITF--TALMDALGKAGRVDDALELLDEMKERGVKP 252

Query: 276 GMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKL 335
           G+  +           +L  A  +   M  R G +PD   Y+ +I+    +++   A ++
Sbjct: 253 GVVTYNALIAGFGKVGDLVEAYNLLDEMK-RNGCKPDVVTYSCLITGLIKASQLDEACQV 311

Query: 336 LDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
           L +M   G  PD  TYN L   L K   L +A  LF+ M
Sbjct: 312 LKKMEKEGCPPDTITYNTLINGLGKAGLLNDAGRLFDRM 350



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 73/284 (25%), Positives = 125/284 (44%), Gaps = 13/284 (4%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RV 195
           TF ++  +   A RV DA+   D M++ G K  V   N+L++   + G  ++A+  L  +
Sbjct: 221 TFTALMDALGKAGRVDDALELLDEMKERGVKPGVVTYNALIAGFGKVGDLVEAYNLLDEM 280

Query: 196 VDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
                KPD  TY+ L+ G  K   +  A +   +M  E G  PD +  Y++ +  L K  
Sbjct: 281 KRNGCKPDVVTYSCLITGLIKASQLDEACQVLKKMEKE-GCPPDTI-TYNTLINGLGKA- 337

Query: 256 DGIYETVNSL-KRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTH 314
            G+      L  RM  +GCNP +  +            +  A  ++  M   +G +PD  
Sbjct: 338 -GLLNDAGRLFDRMKSKGCNPDVVTYSTLITALGKAARVESACVLFEEME-SVGIQPDLF 395

Query: 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
            Y  +I++   + +   A +L  EM   G  PD+ TYN     L +G +  EA  +F +M
Sbjct: 396 TYCSIITVLGKAGQVDDADRLFSEMRGKGLSPDVITYNAFLNSLGRGGRFKEARKIFEDM 455

Query: 375 VKN---ENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCS 415
            ++    +V  ++     +    + DD   A    K +IE  C+
Sbjct: 456 KESGLLPDVATYDALLLGLSKTKEVDD---ACGLLKELIEQGCA 496



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 78/299 (26%), Positives = 130/299 (43%), Gaps = 16/299 (5%)

Query: 104 WNLVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASVFSSYVVADRVKDAITTFDVME 162
           +N +++ LGK  L +        MK +     + T++++ ++   A RV+ A   F+ ME
Sbjct: 327 YNTLINGLGKAGLLNDAGRLFDRMKSKGCNPDVVTYSTLITALGKAARVESACVLFEEME 386

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVA 221
             G + D+F   S+++ + + G+  DA +    + G+ + PD  TY   L    +     
Sbjct: 387 SVGIQPDLFTYCSIITVLGKAGQVDDADRLFSEMRGKGLSPDVITYNAFLNSLGRGGRFK 446

Query: 222 NAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFK 281
            A+K F +M  E G  PD V  YD+ L+ L K  + + +    LK ++E+GC     F  
Sbjct: 447 EARKIFEDMK-ESGLLPD-VATYDALLLGLSKTKE-VDDACGLLKELIEQGC----AFDS 499

Query: 282 LAFEECLT-----GQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLL 336
           L F+ECL      G      E +        G  P    YN +I     +     A   L
Sbjct: 500 LKFDECLEILTSWGNVDEAHELL--QFANSKGLWPGASSYNALIDALAKAGRVSEAFNTL 557

Query: 337 DEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMD 395
           +++   G  PDI +Y+ L   L +  ++  A  L  EM K    L+  +    VR   D
Sbjct: 558 EDLKEQGGKPDIVSYSSLISALGQTGQIDTAFELLEEMSKRGLKLSPRSYSNLVRKLQD 616



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 90/344 (26%), Positives = 144/344 (41%), Gaps = 23/344 (6%)

Query: 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL- 193
           + +++ + +S   A + + A+     M+  GCK +++  N+L+  + + G+  +A + L 
Sbjct: 44  VVSYSCLINSLGRAGKWEAALEVVAEMQAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLA 103

Query: 194 RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLK 253
            + D    PD  TY  L+    K   ++ A   F EM  E G  PD    Y+S +  L  
Sbjct: 104 EMRDNGCVPDVRTYNCLISTLGKAGRLSEAFTLFAEMR-ERGCVPDTF-TYNSLIYGL-- 159

Query: 254 GCDGIYETVNSLKRMMER-GCNPG-MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRP 311
           G  G  +    L   MER GC P  MT+  L       G+ ++   F     + R G +P
Sbjct: 160 GKVGRSQKAMELLEEMERHGCPPDVMTYSSLITGLGKDGETVKA--FKLFQEMKRRGRKP 217

Query: 312 DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLF 371
           D+  +  ++     +     A++LLDEM   G  P + TYN L     K   L EA  L 
Sbjct: 218 DSITFTALMDALGKAGRVDDALELLDEMKERGVKPGVVTYNALIAGFGKVGDLVEAYNLL 277

Query: 372 NEMVKNENVLNHENCRAAVRVY-------MDSDDPYVAIKFWKYMIENHCSDLSETGNLL 424
           +EM +N        C+  V  Y       + +     A +  K M +  C   + T N L
Sbjct: 278 DEMKRN-------GCKPDVVTYSCLITGLIKASQLDEACQVLKKMEKEGCPPDTITYNTL 330

Query: 425 VAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARK 468
           + GL    +L +A +    M  KG        S L   L KA +
Sbjct: 331 INGLGKAGLLNDAGRLFDRMKSKGCNPDVVTYSTLITALGKAAR 374



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 81/311 (26%), Positives = 126/311 (40%), Gaps = 5/311 (1%)

Query: 169 DVFALNSLLSAICRDGKTIDA-WQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTF 227
           +V   NSLL+A+ + G+  +A   F  +   +  PD  +Y+ L+    +      A +  
Sbjct: 8   NVVTYNSLLNALAKAGQCEEAQLLFEELKAAKWTPDVVSYSCLINSLGRAGKWEAALEVV 67

Query: 228 GEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEEC 287
            EM  + G  P N+  Y++ L+  L       E +  L  M + GC P +  +       
Sbjct: 68  AEMQAK-GCKP-NLWTYNT-LVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLISTL 124

Query: 288 LTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPD 347
                L  A  ++  M  R G  PDT  YN +I        +  AM+LL+EM  +G  PD
Sbjct: 125 GKAGRLSEAFTLFAEMRER-GCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHGCPPD 183

Query: 348 IQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWK 407
           + TY+ L   L K  +  +A  LF EM +     +     A +     +     A++   
Sbjct: 184 VMTYSSLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAGRVDDALELLD 243

Query: 408 YMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKAR 467
            M E        T N L+AG   +  L EA      M   G +      S L   LIKA 
Sbjct: 244 EMKERGVKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKAS 303

Query: 468 KEAVYEELLKK 478
           +     ++LKK
Sbjct: 304 QLDEACQVLKK 314



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 74/173 (42%)

Query: 308 GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEA 367
           G +P+   YN ++     + +   A++LL EM  NG  PD++TYN L   L K  +L EA
Sbjct: 74  GCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLISTLGKAGRLSEA 133

Query: 368 SGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAG 427
             LF EM +   V +     + +           A++  + M  + C     T + L+ G
Sbjct: 134 FTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHGCPPDVMTYSSLITG 193

Query: 428 LCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKCK 480
           L       +A K  + M  +G +      + L   L KA +     ELL + K
Sbjct: 194 LGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAGRVDDALELLDEMK 246


>gi|414590400|tpg|DAA40971.1| TPA: hypothetical protein ZEAMMB73_404079 [Zea mays]
          Length = 745

 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 88/378 (23%), Positives = 161/378 (42%), Gaps = 15/378 (3%)

Query: 105 NLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQY 164
           ++V  L  K  + DA+      ++++ +L  A + +V S +     +  A   FD M++ 
Sbjct: 331 SVVALLCDKGWISDALRVVEDMVQRKVILDEALYTTVLSGFCNKGDLVSARRWFDEMQRK 390

Query: 165 GCKHDVFALNSLLSAICRDGKTIDAWQFLRVV-DGRIKPDNDTYAILLEGWEKERDVANA 223
           G   D     ++++ +CR  +  +A + L+ +   R+  D  TY +L++G+ K   +A A
Sbjct: 391 GLATDGVTYTTMINGLCRAVELEEAEKLLQEMWARRLDVDEVTYTVLIDGYCKRGKMAEA 450

Query: 224 KKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLA 283
            +    MV + G  P NV  Y +    L K  D     V +   ++    N G+      
Sbjct: 451 FQMHNAMV-QRGVTP-NVVTYTALTDGLCKQGD-----VQAANELLHEMSNKGLELNACT 503

Query: 284 FEECLTGQNLRGAEFIWGAM-----VGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDE 338
           +   + G  L  A ++  AM     +     +PD + Y  +I   C S +   A  LL E
Sbjct: 504 YNSLING--LCKAGYLEQAMRTMADMDTACLKPDVYTYTTLIDALCKSGDLDRAHSLLQE 561

Query: 339 MVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDD 398
           M+  G  P I TYN+L        ++     L + M++     N     + ++ Y   ++
Sbjct: 562 MLDKGIKPTIVTYNVLMNGFCMSGRVEGGKKLLDWMLEKNIHPNAATYNSLMKQYCIENN 621

Query: 399 PYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSK 458
                + +K M          T N+L+ G C    + EA+ +   M +KG ++T  + S 
Sbjct: 622 MKSTTEIYKGMRSRDVGPNENTYNILIKGHCKARNMKEALYFHDEMIQKGFRLTATSYSA 681

Query: 459 LKQILIKARKEAVYEELL 476
           L ++L K +K     EL 
Sbjct: 682 LIRLLNKKKKFVEARELF 699



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 69/314 (21%), Positives = 122/314 (38%), Gaps = 45/314 (14%)

Query: 68  ETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSP--YAWNLVVDLLGKNCLFDAMWDAIK 125
           E    VL   Y   G   + F+     +    +P    +  + D L K     A  + + 
Sbjct: 431 EVTYTVLIDGYCKRGKMAEAFQMHNAMVQRGVTPNVVTYTALTDGLCKQGDVQAANELLH 490

Query: 126 SMKKENV-LSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDG 184
            M  + + L+  T+ S+ +    A  ++ A+ T   M+    K DV+   +L+ A+C+ G
Sbjct: 491 EMSNKGLELNACTYNSLINGLCKAGYLEQAMRTMADMDTACLKPDVYTYTTLIDALCKSG 550

Query: 185 KTIDAWQFLR-VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPA 243
               A   L+ ++D  IKP   TY +L+ G+     V   KK        + W       
Sbjct: 551 DLDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKKL-------LDW------- 596

Query: 244 YDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAM 303
                                   M+E+  +P    +    ++     N++    I+  M
Sbjct: 597 ------------------------MLEKNIHPNAATYNSLMKQYCIENNMKSTTEIYKGM 632

Query: 304 VGR-IGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGR 362
             R +G  P+ + YN++I  +C +     A+   DEM+  G      +Y+ L   L K +
Sbjct: 633 RSRDVG--PNENTYNILIKGHCKARNMKEALYFHDEMIQKGFRLTATSYSALIRLLNKKK 690

Query: 363 KLWEASGLFNEMVK 376
           K  EA  LF++M K
Sbjct: 691 KFVEARELFHDMRK 704



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 86/324 (26%), Positives = 128/324 (39%), Gaps = 30/324 (9%)

Query: 169 DVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFG 228
           +V + N LL A+C  G+  DA Q    +     PD  TY IL+ G     ++ NA K   
Sbjct: 258 NVCSYNILLKALCDAGRVKDARQLFDEMAS--APDVVTYGILIHGHCALGELENAVKLLD 315

Query: 229 EMVIEVGWDPDNVPAYDSYLITLLKGCDG--IYETVNSLKRMMERGCNPGMTFFKLAFEE 286
           EMV   G +P N   Y S +  L   CD   I + +  ++ M++R         K+  +E
Sbjct: 316 EMVAG-GVEP-NATVYTSVVALL---CDKGWISDALRVVEDMVQR---------KVILDE 361

Query: 287 CLTGQNLRG--------AEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDE 338
            L    L G        +   W   + R G   D   Y  MI+  C + E   A KLL E
Sbjct: 362 ALYTTVLSGFCNKGDLVSARRWFDEMQRKGLATDGVTYTTMINGLCRAVELEEAEKLLQE 421

Query: 339 MVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDD 398
           M       D  TY +L +   K  K+ EA  + N MV+     N     A         D
Sbjct: 422 MWARRLDVDEVTYTVLIDGYCKRGKMAEAFQMHNAMVQRGVTPNVVTYTALTDGLCKQGD 481

Query: 399 PYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSK 458
              A +    M        + T N L+ GLC    L +A++    M    ++   +  + 
Sbjct: 482 VQAANELLHEMSNKGLELNACTYNSLINGLCKAGYLEQAMRTMADMDTACLKPDVYTYTT 541

Query: 459 LKQILIKA----RKEAVYEELLKK 478
           L   L K+    R  ++ +E+L K
Sbjct: 542 LIDALCKSGDLDRAHSLLQEMLDK 565


>gi|125544747|gb|EAY90886.1| hypothetical protein OsI_12495 [Oryza sativa Indica Group]
          Length = 742

 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 86/335 (25%), Positives = 134/335 (40%), Gaps = 42/335 (12%)

Query: 136 ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR- 194
            TF ++   +V    ++ A+     M + GC      +N L++  C+ G+  DA  +++ 
Sbjct: 217 TTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQ 276

Query: 195 -VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLK 253
            + DG  +PD  TY   + G  +   V +A K    MV E G DPD V  Y+  +  L K
Sbjct: 277 EIADG-FEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQE-GHDPD-VFTYNIVVNCLCK 333

Query: 254 GCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDT 313
               + E    L +M++RGC P +T F        TG  L  A       V   G  PD 
Sbjct: 334 NGQ-LEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEA-LDLARQVTVKGVSPDV 391

Query: 314 HMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNE 373
           + +N++I+  C   +   A++L +EM  +G  PD  TYN L + L    KL +A      
Sbjct: 392 YTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKA------ 445

Query: 374 MVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHM 433
                                        +   K M    C   + T N ++ GLC    
Sbjct: 446 -----------------------------LDLLKDMESTGCPRSTITYNTIIDGLCKKMR 476

Query: 434 LPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARK 468
           + EA +    M  +GI       + L   L K +K
Sbjct: 477 IEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKK 511



 Score = 91.3 bits (225), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 103/423 (24%), Positives = 162/423 (38%), Gaps = 53/423 (12%)

Query: 71  EQVLKFSYSHPGPAVKFFRWSAYQLNDKHSP--YAWNLVVDLLGKNCLFDAMWDAIKSMK 128
           EQ+L      P P       +A    D  +P    +  ++  LG     D M   +  M+
Sbjct: 42  EQLLTALREQPDPDAALRMLNAALARDDFAPGPEVYEEIIRKLGAVGALDLMKVLVAEMR 101

Query: 129 KE-NVLSLATFASVFSSYVVADRVKDAITTF--DVMEQYGCKHDVFALNSLLSAICRDGK 185
           +E + + L    S   SY       DA+      +   +G + D    N LL+ +    K
Sbjct: 102 REGHQVKLGVVHSFLDSYEGQQLFDDAVDLILNQLQPLFGIQADTVVYNHLLNVLVEGSK 161

Query: 186 TIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAY 244
                     +  R IKPD  T+  L++   +   V  A     EM    G  PD     
Sbjct: 162 MKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVIMLEEMSSR-GVAPD----- 215

Query: 245 DSYLITLLKGC--DGIYETVNSLK-RMMERGCNPG-MTFFKLAFEECLTGQNLRGAEFIW 300
           ++   TL++G   +G  E    +K RM+E GC+   +T   L    C  G+      +I 
Sbjct: 216 ETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQ 275

Query: 301 GAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVK 360
             +    GF PD   YN  ++  C ++  G A+K++D MV  G  PD+ TYNI+   L K
Sbjct: 276 QEIAD--GFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCK 333

Query: 361 GRKLWEASGLFNEMVKNE--------NVLNHENCRA------------------------ 388
             +L EA G+ N+MV           N L    C                          
Sbjct: 334 NGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYT 393

Query: 389 ---AVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMA 445
               +       DP++A++ ++ M  + C+    T N L+  LC +  L +A+   K M 
Sbjct: 394 FNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDME 453

Query: 446 EKG 448
             G
Sbjct: 454 STG 456



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 86/362 (23%), Positives = 151/362 (41%), Gaps = 11/362 (3%)

Query: 110 LLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVA----DRVKDAITTFDVMEQYG 165
           L+   C    + DA+  +++E           ++++V      D V  A+   DVM Q G
Sbjct: 257 LINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEG 316

Query: 166 CKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERDVANAK 224
              DVF  N +++ +C++G+  +A   L ++VD    PD  T+  L+        +  A 
Sbjct: 317 HDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEAL 376

Query: 225 KTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPG-MTFFKLA 283
               ++ ++ G  PD V  ++  +  L K  D  +  +   + M   GC P  +T+  L 
Sbjct: 377 DLARQVTVK-GVSPD-VYTFNILINALCKVGDP-HLALRLFEEMKNSGCTPDEVTYNTLI 433

Query: 284 FEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNG 343
              C  G+  +  + +    +   G    T  YN +I   C       A ++ D+M   G
Sbjct: 434 DNLCSLGKLGKALDLLKD--MESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQG 491

Query: 344 AFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAI 403
              +  T+N L + L K +K+ +A  L N+M+      N+    + +  Y    D   A 
Sbjct: 492 ISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAA 551

Query: 404 KFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQIL 463
              + M  N       T   L+ GLC       A+K  +GM  KG++ TP A + + Q L
Sbjct: 552 DILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSL 611

Query: 464 IK 465
            +
Sbjct: 612 FR 613



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 75/339 (22%), Positives = 140/339 (41%), Gaps = 52/339 (15%)

Query: 80  HPGPAVKFFRWSAYQLNDKHSP--YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLA 136
           H G A+K        + + H P  + +N+VV+ L KN   +     +  M     L  + 
Sbjct: 301 HVGHALKVMD---VMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDIT 357

Query: 137 TFASVFSSYVVADRVKDA---------------ITTFDV--------------------M 161
           TF ++ ++    +R+++A               + TF++                    M
Sbjct: 358 TFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEM 417

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDND-TYAILLEGWEKERDV 220
           +  GC  D    N+L+  +C  GK   A   L+ ++    P +  TY  +++G  K+  +
Sbjct: 418 KNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRI 477

Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG--CDGIYETVNSLKRMMERGCNPG-M 277
             A++ F +M  ++     N   +++ +  L K    D  +E +N   +M+  G  P  +
Sbjct: 478 EEAEEVFDQM--DLQGISRNAITFNTLIDGLCKDKKIDDAFELIN---QMISEGLQPNNI 532

Query: 278 TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLD 337
           T+  +    C  G +++ A  I   M    GF  D   Y  +I+  C +  T  A+K+L 
Sbjct: 533 TYNSILTHYCKQG-DIKKAADILETMTAN-GFEVDVVTYGTLINGLCKAGRTQVALKVLR 590

Query: 338 EMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK 376
            M   G  P  + YN + + L +   + +A  LF EM +
Sbjct: 591 GMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAE 629



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/260 (22%), Positives = 109/260 (41%), Gaps = 7/260 (2%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASVFSSYVVADRVKDAITTFDVM 161
            +N ++D L          D +K M+      S  T+ ++        R+++A   FD M
Sbjct: 428 TYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQM 487

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERDV 220
           +  G   +    N+L+  +C+D K  DA++ + +++   ++P+N TY  +L  + K+ D+
Sbjct: 488 DLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDI 547

Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFF 280
             A      M    G++ D V  Y + +  L K        +  L+ M  +G  P    +
Sbjct: 548 KKAADILETMTAN-GFEVD-VVTYGTLINGLCKA-GRTQVALKVLRGMRIKGMRPTPKAY 604

Query: 281 KLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCY-SNETGAAMKLLDEM 339
               +      N+R A  ++  M   +G  PD   Y ++    C        A   + EM
Sbjct: 605 NPVLQSLFRRNNIRDALSLFREM-AEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEM 663

Query: 340 VYNGAFPDIQTYNILFEFLV 359
           V  G  P+  ++ +L E L+
Sbjct: 664 VDKGFIPEFSSFRMLAEGLL 683


>gi|225432035|ref|XP_002273694.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Vitis vinifera]
          Length = 666

 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 94/392 (23%), Positives = 154/392 (39%), Gaps = 48/392 (12%)

Query: 84  AVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASVF 142
           A+++F+  A   + KH+P  + ++++ L      D +   ++ MK E +  S   F SV 
Sbjct: 59  ALEYFKSIANSKSFKHTPLTYQMMIEKLASEREMDCVQYLLQQMKLEGISCSEDLFISVI 118

Query: 143 SSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIK- 201
            SY  A   + A+ TF  M+ +  K  V   N +L A+  + +    +Q +  +   +K 
Sbjct: 119 GSYRRAGSSEQALKTFYRMQDFRVKPTVKIYNHILDALLDENR----FQMINPIYSNMKK 174

Query: 202 ----PDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPD------------------ 239
               P+  TY ILL+   K   V  A K   EM  + G DPD                  
Sbjct: 175 DGMEPNVFTYNILLKALCKNNRVDGAHKLLVEMSSK-GCDPDEVSYTTLISSLCKLGKVK 233

Query: 240 -----------NVPAYDSYLITLLKGCDGIY---ETVNSLKRMMERGCNPGMTFFKLAFE 285
                      +VP Y++    L+ G    Y   E    L  MM +G +P +  +     
Sbjct: 234 EARELAMSFTPSVPVYNA----LINGVCKEYTFEEAFQLLDEMMNKGIDPNVISYTTIIN 289

Query: 286 ECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAF 345
                 N+  +  +   M  R G  P+ H +  +I  +     +  A+   D M+  G  
Sbjct: 290 ALSDAGNVELSLAVLAKMFAR-GCSPNLHTFTSLIKGFFLKGGSHEALDFWDRMIREGVV 348

Query: 346 PDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKF 405
           P++  YN L   L   R L +A  +FN+M  N    N     A +  Y  + D   A + 
Sbjct: 349 PNVVAYNALMHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSALIDGYAKAGDLDGASEV 408

Query: 406 WKYMIENHCSDLSETGNLLVAGLCDMHMLPEA 437
           W +MI + C         +V  LC   M  +A
Sbjct: 409 WNWMITHGCHPNVVAYTCMVDVLCRNSMFNQA 440



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 101/405 (24%), Positives = 171/405 (42%), Gaps = 31/405 (7%)

Query: 77  SYSHPGPAVK----FFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENV 132
           SY   G + +    F+R   +++  K +   +N ++D L     F  +     +MKK+ +
Sbjct: 120 SYRRAGSSEQALKTFYRMQDFRV--KPTVKIYNHILDALLDENRFQMINPIYSNMKKDGM 177

Query: 133 L-SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ 191
             ++ T+  +  +    +RV  A      M   GC  D  +  +L+S++C+ GK  +A  
Sbjct: 178 EPNVFTYNILLKALCKNNRVDGAHKLLVEMSSKGCDPDEVSYTTLISSLCKLGKVKEA-- 235

Query: 192 FLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITL 251
             R +     P    Y  L+ G  KE     A +   EM +  G DP NV +Y + +I  
Sbjct: 236 --RELAMSFTPSVPVYNALINGVCKEYTFEEAFQLLDEM-MNKGIDP-NVISYTT-IINA 290

Query: 252 LKGCDGIYETVNSLKRMMERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFR 310
           L     +  ++  L +M  RGC+P + TF  L     L G +    +F W  M+ R G  
Sbjct: 291 LSDAGNVELSLAVLAKMFARGCSPNLHTFTSLIKGFFLKGGSHEALDF-WDRMI-REGVV 348

Query: 311 PDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGL 370
           P+   YN ++   C     G A+ + ++M  NG  P+++TY+ L +   K   L  AS +
Sbjct: 349 PNVVAYNALMHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSALIDGYAKAGDLDGASEV 408

Query: 371 FNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKY---MIEN----HCSDLSETGNL 423
           +N M+ +        C   V  Y    D       +     +IEN    +C   + T N 
Sbjct: 409 WNWMITH-------GCHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFNT 461

Query: 424 LVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARK 468
            + GLC    +  A+K    M   G        ++L   L+K R+
Sbjct: 462 FIKGLCGSGRVDWAIKVFDQMGNSGCFPNTTTYNELLDSLLKDRR 506



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 71/283 (25%), Positives = 121/283 (42%), Gaps = 24/283 (8%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKE----NVLSLATFASVFSSYVVADRVKDAITTF 158
            +N +++ + K   F+  +  +  M  +    NV+S  T  +  S    A  V+ ++   
Sbjct: 248 VYNALINGVCKEYTFEEAFQLLDEMMNKGIDPNVISYTTIINALSD---AGNVELSLAVL 304

Query: 159 DVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKE 217
             M   GC  ++    SL+      G + +A  F  R++   + P+   Y  L+ G   +
Sbjct: 305 AKMFARGCSPNLHTFTSLIKGFFLKGGSHEALDFWDRMIREGVVPNVVAYNALMHGLCSK 364

Query: 218 RDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG--CDGIYETVNSLKRMMERGCNP 275
           R + +A   F +M I  G  P NV  Y + +    K    DG  E  N    M+  GC+P
Sbjct: 365 RSLGDAVSVFNQMEIN-GCCP-NVRTYSALIDGYAKAGDLDGASEVWN---WMITHGCHP 419

Query: 276 GMTFFKLAFEECLTGQNLRGAEFIWG-AMVGRIGFR---PDTHMYNMMISLYCYSNETGA 331
            +  +      C+     R + F     ++  +      P+T  +N  I   C S     
Sbjct: 420 NVVAYT-----CMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFNTFIKGLCGSGRVDW 474

Query: 332 AMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
           A+K+ D+M  +G FP+  TYN L + L+K R+  EA GL  +M
Sbjct: 475 AIKVFDQMGNSGCFPNTTTYNELLDSLLKDRRFGEAFGLVKDM 517



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 75/354 (21%), Positives = 138/354 (38%), Gaps = 42/354 (11%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           +L TF S+   + +     +A+  +D M + G   +V A N+L+  +C      DA    
Sbjct: 315 NLHTFTSLIKGFFLKGGSHEALDFWDRMIREGVVPNVVAYNALMHGLCSKRSLGDAVSVF 374

Query: 194 RVVD-GRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDP-------------- 238
             ++     P+  TY+ L++G+ K  D+  A + +  M+   G  P              
Sbjct: 375 NQMEINGCCPNVRTYSALIDGYAKAGDLDGASEVWNWMITH-GCHPNVVAYTCMVDVLCR 433

Query: 239 ----------------DNVPAYDSYLITLLKGCDG---IYETVNSLKRMMERGCNPGMTF 279
                           +N P       T +KG  G   +   +    +M   GC P  T 
Sbjct: 434 NSMFNQAYCLIENMQVENCPPNTVTFNTFIKGLCGSGRVDWAIKVFDQMGNSGCFPNTTT 493

Query: 280 FKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEM 339
           +    +  L  +    A  +   M  R G   +   YN +I  YC +   G A++LL +M
Sbjct: 494 YNELLDSLLKDRRFGEAFGLVKDMEHR-GIELNLVTYNTIIYGYCCAGMLGEALELLGKM 552

Query: 340 VYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNE---NVLNHENCRAAVRVYMDS 396
           V  G  PD  T NI+ +   K  K+  A  L + +   +   +++ + +  + +  ++  
Sbjct: 553 VVRGTKPDAITVNIVIDAYCKQGKVNIAIQLMDRLSAGKWHPDIIAYTSLISGICTHIGV 612

Query: 397 DDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQ 450
           ++   AI + + M+    S    T N+LV  L        AV++   +   G +
Sbjct: 613 EE---AIVYLRRMLSEGISPNVATWNVLVRHLFSNMGHSGAVQFLDAVLGSGFE 663



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 59/258 (22%), Positives = 107/258 (41%), Gaps = 41/258 (15%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVM 161
           A+  +VD+L +N +F+  +  I++M+ EN   +  TF +       + RV  AI  FD M
Sbjct: 423 AYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFNTFIKGLCGSGRVDWAIKVFDQM 482

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDV 220
              GC  +    N LL ++ +D +  +A+  ++ ++ R I+ +  TY  ++ G+     +
Sbjct: 483 GNSGCFPNTTTYNELLDSLLKDRRFGEAFGLVKDMEHRGIELNLVTYNTIIYGYCCAGML 542

Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFF 280
             A +  G+MV+  G  PD +                   TVN +   ++  C  G    
Sbjct: 543 GEALELLGKMVVR-GTKPDAI-------------------TVNIV---IDAYCKQGKVNI 579

Query: 281 KLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMV 340
            +   + L+                   + PD   Y  +IS  C       A+  L  M+
Sbjct: 580 AIQLMDRLSAGK----------------WHPDIIAYTSLISGICTHIGVEEAIVYLRRML 623

Query: 341 YNGAFPDIQTYNILFEFL 358
             G  P++ T+N+L   L
Sbjct: 624 SEGISPNVATWNVLVRHL 641


>gi|147771991|emb|CAN69054.1| hypothetical protein VITISV_022964 [Vitis vinifera]
          Length = 586

 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 66/250 (26%), Positives = 117/250 (46%), Gaps = 5/250 (2%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           ++ATF ++     V  ++ + +  FD M   G + +V    +L++ +C+ G T  A + L
Sbjct: 137 NIATFNTLIRGLCVEGKIGEVLHLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLL 196

Query: 194 RVVD-GRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
           R ++ G  +PD   Y  +++   K+R V  A   F EM I  G  P ++  Y+S +  L 
Sbjct: 197 RSMEQGNCQPDVVVYTSIIDSLCKDRQVTQAFNLFSEM-IHQGISP-SIFTYNSLIHALC 254

Query: 253 KGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD 312
             C+  + T   L  M+     P +  F    +       +  A  +   M+ R G  P+
Sbjct: 255 NLCEWKHVTA-LLNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKR-GVEPN 312

Query: 313 THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFN 372
              YN ++  +C  +E   A+K+ D MV  G  PD+ +Y+ L     K +++ +A  LF 
Sbjct: 313 VVTYNALMDGHCLRSEMDEAVKVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFE 372

Query: 373 EMVKNENVLN 382
           EM + E + N
Sbjct: 373 EMCRKELIPN 382



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 75/336 (22%), Positives = 140/336 (41%), Gaps = 12/336 (3%)

Query: 100 SPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTF 158
           S + +N ++  L   C +  +   +  M    ++ ++  F++V  +     +V +A    
Sbjct: 242 SIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVV 301

Query: 159 DVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKE 217
           D+M + G + +V   N+L+   C   +  +A + F  +V     PD  +Y+ L+ G+ K 
Sbjct: 302 DMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVCKGFAPDVVSYSTLINGYCKI 361

Query: 218 RDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG---CDGIYETVNSLKRMMERGCN 274
           + +  A   F EM        + +P   +Y  TL+ G      + + +     M+ RG  
Sbjct: 362 QRIEKAMYLFEEM-----CRKELIPNTVTY-STLMHGLCHVGRLQDAIALFHEMVTRGQI 415

Query: 275 PGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMK 334
           P    + +  +     + L  A  +  A+ G     PD  +Y ++I   C + E  AA  
Sbjct: 416 PDFVSYCILLDYLCKNRRLDEAIALLKAIEGS-NMDPDIQIYTIVIDGMCRAGELEAARD 474

Query: 335 LLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYM 394
           L   +   G  P++ TY I+   L +   L EAS LF EM +     N        R ++
Sbjct: 475 LFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEASKLFGEMKRKGYSPNGCTYNLITRGFL 534

Query: 395 DSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCD 430
            +++    I+  + M+    S    T  +LV  L D
Sbjct: 535 RNNETLRGIQLLQEMLARGFSADVSTSTVLVEMLSD 570



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 58/112 (51%), Gaps = 3/112 (2%)

Query: 265 LKRMMERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLY 323
           L ++++ G  P + TF  L    C+ G+ +     ++  M+G  GF+P+   Y  +I+  
Sbjct: 126 LAKILKLGHQPNIATFNTLIRGLCVEGK-IGEVLHLFDKMIGE-GFQPNVVTYGTLINGL 183

Query: 324 CYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
           C    T AA++LL  M      PD+  Y  + + L K R++ +A  LF+EM+
Sbjct: 184 CKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTQAFNLFSEMI 235



 Score = 46.2 bits (108), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 34/156 (21%), Positives = 63/156 (40%)

Query: 308 GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEA 367
           G  P+ +  N++I+ +C+    G A  +L +++  G  P+I T+N L   L    K+ E 
Sbjct: 98  GIPPNIYTLNILINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEV 157

Query: 368 SGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAG 427
             LF++M+      N       +           AI+  + M + +C         ++  
Sbjct: 158 LHLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDS 217

Query: 428 LCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQIL 463
           LC    + +A      M  +GI  + F  + L   L
Sbjct: 218 LCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHAL 253


>gi|255556189|ref|XP_002519129.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541792|gb|EEF43340.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 643

 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 99/394 (25%), Positives = 164/394 (41%), Gaps = 41/394 (10%)

Query: 93  YQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRV 151
           ++L  K + Y +N+++++L K        D I SM+   V  ++ T+ +V   Y    RV
Sbjct: 228 FRLKIKSTVYTFNIMINVLCKEGKLKKAKDFIGSMENLGVKPNVVTYNTVIHGYCSRGRV 287

Query: 152 KDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAIL 210
           + A    D+M+  G + D +   SL+S +C+ GK  +A   L ++ +  + P   TY  L
Sbjct: 288 EGARMVLDIMKNRGVEPDSYTYGSLISGMCKGGKLEEASGILEKMKEIGLLPTAVTYNTL 347

Query: 211 LEGWEKERDVANAKKTFGEMV------------------------------IEVGWDPDN 240
           ++G+  + D+  A     EMV                              I+   D   
Sbjct: 348 IDGYCNKGDLVKAFGYRDEMVRRAILPTVSTYNLLIHALFLEGKMDEADGMIKDMGDSGI 407

Query: 241 VPAYDSYLITLLKG---CDGIYETVNSLKRMMERGCNPGM-TFFKLAFEECLTGQN-LRG 295
           VP   +Y I L+ G   C    +  N    M+ +G  P + T+  L +   L+ +N ++ 
Sbjct: 408 VPDSITYNI-LINGYCRCGNAKKAFNLHDEMISKGIQPTLVTYTSLIY--VLSKRNRMKA 464

Query: 296 AEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILF 355
           A+ ++  ++ R G  PD  M+N +I  +C +     A  LL EM      PD  TYN L 
Sbjct: 465 ADDLFEKII-REGASPDLIMFNALIDGHCANGNLDRAFALLKEMDKRNIVPDEVTYNTLM 523

Query: 356 EFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCS 415
           +   +  K+ EA  L  EM +     +H +    +  Y    D   A      M+    +
Sbjct: 524 QGRCREGKVEEARELLKEMKRRGIRPDHISYNTLISGYSKRGDINDAFTIRDEMLSIGFN 583

Query: 416 DLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
               T N L+ GLC       A +  K M  KGI
Sbjct: 584 PTLLTYNALIQGLCKNQQGDLAEELLKEMVSKGI 617



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 102/469 (21%), Positives = 177/469 (37%), Gaps = 115/469 (24%)

Query: 26  FASHLDVPNLPPTIKTLC---EIIANTPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPG 82
           F +H+    L   IKT C    +++ +PSP       K+ + + ++T+E       S   
Sbjct: 102 FVTHIGFKGL--DIKTKCLAVAVVSRSPSP-------KSTLHLLKQTIE-------SRVA 145

Query: 83  PAVKFFRWSAY---QLNDKHSPYAWNLVVDLLGKNCL----FDAMWDAIKSMKKENVL-S 134
                F   A    +L  K S     +V D+L + C      D  ++    MK++ V+  
Sbjct: 146 GVKDVFHELAITRDRLGTKSS-----IVFDMLIRACCELKRGDDAFECFDMMKEKGVVPK 200

Query: 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR 194
           + TF ++ S ++  ++ +     +  M +   K  V+  N +++ +C++GK   A  F+ 
Sbjct: 201 IETFNAMLSLFLKLNQTETVWVLYAEMFRLKIKSTVYTFNIMINVLCKEGKLKKAKDFIG 260

Query: 195 VVDG-RIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEV----GWDPDNVPAYDSYLI 249
            ++   +KP+  TY  ++ G+     V  A+     MV+++    G +PD+   Y S + 
Sbjct: 261 SMENLGVKPNVVTYNTVIHGYCSRGRVEGAR-----MVLDIMKNRGVEPDSY-TYGSLIS 314

Query: 250 TLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGF 309
            + KG   + E    L++M E                                    IG 
Sbjct: 315 GMCKG-GKLEEASGILEKMKE------------------------------------IGL 337

Query: 310 RPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASG 369
            P    YN +I  YC   +   A    DEMV     P + TYN+L   L    K+ EA G
Sbjct: 338 LPTAVTYNTLIDGYCNKGDLVKAFGYRDEMVRRAILPTVSTYNLLIHALFLEGKMDEADG 397

Query: 370 LFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLC 429
           +  +M  +  V +                                   S T N+L+ G C
Sbjct: 398 MIKDMGDSGIVPD-----------------------------------SITYNILINGYC 422

Query: 430 DMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKK 478
                 +A      M  KGIQ T    + L  +L K  +    ++L +K
Sbjct: 423 RCGNAKKAFNLHDEMISKGIQPTLVTYTSLIYVLSKRNRMKAADDLFEK 471



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 64/240 (26%), Positives = 96/240 (40%), Gaps = 48/240 (20%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           +L T+ S+       +R+K A   F+ + + G   D+   N+L+   C +G    A+  L
Sbjct: 445 TLVTYTSLIYVLSKRNRMKAADDLFEKIIREGASPDLIMFNALIDGHCANGNLDRAFALL 504

Query: 194 RVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
           + +D R I PD  TY  L++G  +E  V  A++                           
Sbjct: 505 KEMDKRNIVPDEVTYNTLMQGRCREGKVEEAREL-------------------------- 538

Query: 253 KGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRG----AEFIWGAMVGRIG 308
                       LK M  RG  P      +++   ++G + RG    A  I   M+  IG
Sbjct: 539 ------------LKEMKRRGIRPD----HISYNTLISGYSKRGDINDAFTIRDEMLS-IG 581

Query: 309 FRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEAS 368
           F P    YN +I   C + +   A +LL EMV  G  PD  TY  L E + K     EAS
Sbjct: 582 FNPTLLTYNALIQGLCKNQQGDLAEELLKEMVSKGITPDDSTYFSLIEGIGKVDDSSEAS 641


>gi|357449161|ref|XP_003594857.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355483905|gb|AES65108.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 647

 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 95/388 (24%), Positives = 167/388 (43%), Gaps = 16/388 (4%)

Query: 81  PGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLA---- 136
           P  A+  F     + + K +  ++N V++++ +   FD   +    +   N  S      
Sbjct: 116 PQKALDLFHRMGAEFHCKQTVKSFNTVLNVVIQEGCFDLALEFYNHVIDSNSFSNIQPNG 175

Query: 137 -TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-- 193
            +F  V  +      V  A+  F  M    C  D +  ++L+  +C +G+  +A   L  
Sbjct: 176 LSFNLVIKALCRVGNVDQAVEVFRGMSDRNCVADGYTYSTLMHGLCNEGRIDEAVSLLDE 235

Query: 194 RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITL-L 252
             V+G   P+   + +L+    K+ D++ A K    M ++ G  P+ V  Y+S +  L L
Sbjct: 236 MQVEGTF-PNPVAFNVLISALCKKGDLSRASKLVDNMFLK-GCVPNEV-TYNSLVHGLCL 292

Query: 253 KGCDGIYETVNSLKRMMERGCNPG-MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRP 311
           KG   + + ++ L RM+   C P  +TF  L       G+ L G   +    +   G+R 
Sbjct: 293 KG--KLDKAMSLLNRMVANKCVPNDITFGTLVDGFVKHGRALDGVRVL--VSLEEKGYRG 348

Query: 312 DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLF 371
           +   Y+ +IS      +    M+L  EMV  G  P+   Y+ L + L +  K  EA    
Sbjct: 349 NEFSYSSLISGLFKEGKGEHGMQLWKEMVEKGCKPNTIVYSALIDGLCREGKPDEAKEYL 408

Query: 372 NEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDM 431
            EM    +  N     + +  Y ++ D + AI  WK M +N C+      ++L+ GLC  
Sbjct: 409 IEMKNKGHTPNSFTYSSLMWGYFEAGDIHKAILVWKEMTDNDCNHHEVCYSILINGLCKN 468

Query: 432 HMLPEAVKYAKGMAEKGIQVTPFALSKL 459
             L EA+   K M  +GI++   A S +
Sbjct: 469 GKLKEALIVWKQMLSRGIKLDVVAYSSM 496



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 65/266 (24%), Positives = 118/266 (44%), Gaps = 7/266 (2%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-V 195
           TF ++   +V   R  D +     +E+ G + + F+ +SL+S + ++GK     Q  + +
Sbjct: 317 TFGTLVDGFVKHGRALDGVRVLVSLEEKGYRGNEFSYSSLISGLFKEGKGEHGMQLWKEM 376

Query: 196 VDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
           V+   KP+   Y+ L++G  +E     AK+   EM  + G  P++   Y S +    +  
Sbjct: 377 VEKGCKPNTIVYSALIDGLCREGKPDEAKEYLIEMKNK-GHTPNSF-TYSSLMWGYFEAG 434

Query: 256 DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHM 315
           D I++ +   K M +  CN     + +          L+ A  +W  M+ R G + D   
Sbjct: 435 D-IHKAILVWKEMTDNDCNHHEVCYSILINGLCKNGKLKEALIVWKQMLSR-GIKLDVVA 492

Query: 316 YNMMISLYCYSNETGAAMKLLDEMV-YNGAF-PDIQTYNILFEFLVKGRKLWEASGLFNE 373
           Y+ MI  +C +      MKL ++M+ +N    PD+ TYNIL         +  A  + N 
Sbjct: 493 YSSMIHGFCNAQLVEQGMKLFNQMLCHNPKLQPDVVTYNILLNAFCTKNSVSRAIDILNT 552

Query: 374 MVKNENVLNHENCRAAVRVYMDSDDP 399
           M+      +   C   ++   D+ DP
Sbjct: 553 MLDQGCDPDFITCDIFLKTLRDNMDP 578



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 69/174 (39%), Gaps = 5/174 (2%)

Query: 312 DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLF 371
           D + Y+ ++   C       A+ LLDEM   G FP+   +N+L   L K   L  AS L 
Sbjct: 209 DGYTYSTLMHGLCNEGRIDEAVSLLDEMQVEGTFPNPVAFNVLISALCKKGDLSRASKLV 268

Query: 372 NEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDM 431
           + M     V N     + V           A+     M+ N C     T   LV G    
Sbjct: 269 DNMFLKGCVPNEVTYNSLVHGLCLKGKLDKAMSLLNRMVANKCVPNDITFGTLVDGFVKH 328

Query: 432 HMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKE----AVYEELLKK-CK 480
               + V+    + EKG +   F+ S L   L K  K      +++E+++K CK
Sbjct: 329 GRALDGVRVLVSLEEKGYRGNEFSYSSLISGLFKEGKGEHGMQLWKEMVEKGCK 382


>gi|413924892|gb|AFW64824.1| hypothetical protein ZEAMMB73_716034 [Zea mays]
          Length = 721

 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 88/322 (27%), Positives = 140/322 (43%), Gaps = 21/322 (6%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-V 195
           T+ S+ + Y  A  +K+A+     + + G    V   N+L+   CR G   +A +    +
Sbjct: 380 TYNSLLNRYCKAGNLKEALWLLGDLRRAGLAPTVLTYNTLIDGYCRLGDLAEARRLKEEM 439

Query: 196 VDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
           V+    PD  TY IL+ G  K R++A A++ F EM+ + G  PD   AY++ +   L   
Sbjct: 440 VEQGCFPDVCTYTILMNGSRKVRNLAMAREFFDEMLSK-GLQPDCF-AYNTRICAELT-L 496

Query: 256 DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHM 315
                     + MM +G  P    + +  +      NL+ A+ +   MV   G +PD   
Sbjct: 497 SSTPMAFQLREVMMLKGIYPDTVTYNVIIDGLCKTGNLKDAKRLKTKMVSD-GLQPDCIT 555

Query: 316 YNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
           Y  +I  +C       A KLL+ MV +G  P + TY IL     +   L+ A G F +M+
Sbjct: 556 YTCLIHAHCERGLLREARKLLNGMVSDGLQPSVVTYTILVHTCCRRGNLYSAYGWFRKML 615

Query: 376 -----KNE---NVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAG 427
                 NE   NVL H  C       M    P +A + +  M+E   +    T  LL+ G
Sbjct: 616 DVGIEPNEITYNVLIHALC-------MTGRTP-LAFRHFHEMLERGLAPNKYTYTLLIDG 667

Query: 428 LCDMHMLPEAVKYAKGMAEKGI 449
            C      +A++    M + GI
Sbjct: 668 NCREGNWADAIRLYFEMHQNGI 689



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 94/371 (25%), Positives = 159/371 (42%), Gaps = 32/371 (8%)

Query: 94  QLNDKHSPYAWN-LVVDLLGKNCLFDAMWDAIK-SMKKENVL-SLATFASVFSSYVVADR 150
           +L+ K S + +N L+  LL +   F    +A++  M+ E ++ ++ T+ ++    +  ++
Sbjct: 301 RLSKKASSFTYNPLITALLERG--FVRKAEALQMEMENEGIMPTVVTYNAIIHGLLKCEQ 358

Query: 151 VKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDA-WQFLRVVDGRIKPDNDTYAI 209
            + A   F  M   G   DV   NSLL+  C+ G   +A W    +    + P   TY  
Sbjct: 359 AEAAQVKFAEMRAMGLLPDVITYNSLLNRYCKAGNLKEALWLLGDLRRAGLAPTVLTYNT 418

Query: 210 LLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNS---LK 266
           L++G+ +  D+A A++   EMV E G  PD      +Y I L+ G   +     +     
Sbjct: 419 LIDGYCRLGDLAEARRLKEEMV-EQGCFPDVC----TYTI-LMNGSRKVRNLAMAREFFD 472

Query: 267 RMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYS 326
            M+ +G  P    +       LT  +   A  +   M+ + G  PDT  YN++I   C +
Sbjct: 473 EMLSKGLQPDCFAYNTRICAELTLSSTPMAFQLREVMMLK-GIYPDTVTYNVIIDGLCKT 531

Query: 327 NETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNE-------- 378
                A +L  +MV +G  PD  TY  L     +   L EA  L N MV +         
Sbjct: 532 GNLKDAKRLKTKMVSDGLQPDCITYTCLIHAHCERGLLREARKLLNGMVSDGLQPSVVTY 591

Query: 379 NVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAV 438
            +L H  CR          + Y A  +++ M++        T N+L+  LC     P A 
Sbjct: 592 TILVHTCCRRG--------NLYSAYGWFRKMLDVGIEPNEITYNVLIHALCMTGRTPLAF 643

Query: 439 KYAKGMAEKGI 449
           ++   M E+G+
Sbjct: 644 RHFHEMLERGL 654



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 87/342 (25%), Positives = 144/342 (42%), Gaps = 17/342 (4%)

Query: 119 AMWDAIKSMKKENVL-----SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDV--F 171
           A WD ++++  E +      ++ T+ ++  S++   R  +A      ME  G    +   
Sbjct: 216 ARWDDVRAVYGEMLQLRVEPTIVTYNTLLDSFLKEGRKDEASMLLKEMETQGGGFSLNDV 275

Query: 172 ALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMV 231
             N ++S + R+G   +A + +  +    K  + TY  L+    +   V  A+    EM 
Sbjct: 276 TFNVVISFLAREGHLENAVKLVDSMRLSKKASSFTYNPLITALLERGFVRKAEALQMEME 335

Query: 232 IEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPG-MTFFKLAFEECLTG 290
            E G  P  V  Y++ +  LLK C+           M   G  P  +T+  L    C  G
Sbjct: 336 NE-GIMP-TVVTYNAIIHGLLK-CEQAEAAQVKFAEMRAMGLLPDVITYNSLLNRYCKAG 392

Query: 291 QNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQT 350
            NL+ A ++ G +  R G  P    YN +I  YC   +   A +L +EMV  G FPD+ T
Sbjct: 393 -NLKEALWLLGDL-RRAGLAPTVLTYNTLIDGYCRLGDLAEARRLKEEMVEQGCFPDVCT 450

Query: 351 YNILFEFLVKGRKLWEASGLFNEMVKN--ENVLNHENCRAAVRVYMDSDDPYVAIKFWKY 408
           Y IL     K R L  A   F+EM+    +      N R    + + S    +A +  + 
Sbjct: 451 YTILMNGSRKVRNLAMAREFFDEMLSKGLQPDCFAYNTRICAELTLSSTP--MAFQLREV 508

Query: 409 MIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQ 450
           M+       + T N+++ GLC    L +A +    M   G+Q
Sbjct: 509 MMLKGIYPDTVTYNVIIDGLCKTGNLKDAKRLKTKMVSDGLQ 550



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 91/207 (43%), Gaps = 11/207 (5%)

Query: 159 DVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQF-LRVVDGRIKPDNDTYAILLEGWEKE 217
           +VM   G   D    N ++  +C+ G   DA +   ++V   ++PD  TY  L+    + 
Sbjct: 507 EVMMLKGIYPDTVTYNVIIDGLCKTGNLKDAKRLKTKMVSDGLQPDCITYTCLIHAHCER 566

Query: 218 RDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC--DGIYETVNSLKRMMERGCNP 275
             +  A+K    MV + G  P  V    +Y I +   C    +Y      ++M++ G  P
Sbjct: 567 GLLREARKLLNGMVSD-GLQPSVV----TYTILVHTCCRRGNLYSAYGWFRKMLDVGIEP 621

Query: 276 G-MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMK 334
             +T+  L    C+TG+        +  M+ R G  P+ + Y ++I   C       A++
Sbjct: 622 NEITYNVLIHALCMTGRTPLAFRH-FHEMLER-GLAPNKYTYTLLIDGNCREGNWADAIR 679

Query: 335 LLDEMVYNGAFPDIQTYNILFEFLVKG 361
           L  EM  NG  PD  T+N LF+   +G
Sbjct: 680 LYFEMHQNGIPPDYCTHNALFKGFDEG 706


>gi|449449677|ref|XP_004142591.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Cucumis sativus]
          Length = 748

 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 86/320 (26%), Positives = 140/320 (43%), Gaps = 13/320 (4%)

Query: 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR 194
           + ++++V   Y     +K A+   D M+  G K + +  NS++  +C+ GK+ +A + LR
Sbjct: 293 VVSYSTVIDGYCHLGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLR 352

Query: 195 -VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLK 253
            ++  +I PDN  Y  L+ G+ K   V  A K F EM+          P Y +Y  TL++
Sbjct: 353 EMMSQKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEML-----SKKISPDYITY-TTLIQ 406

Query: 254 GCDG---IYETVNSLKRMMERGCNPG-MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGF 309
           G      + E  N    M+ RG  P  +T+  L    C  G+ +  A  +   MV ++G 
Sbjct: 407 GFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGE-MVNAFSLHNEMV-QMGM 464

Query: 310 RPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASG 369
            P+   Y  +I   C   E   A +LLDEM   G   ++  YN +   + K   + +A  
Sbjct: 465 TPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIK 524

Query: 370 LFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLC 429
           L  EM       +       +  Y    D   A K  + M++        T N+L+ G C
Sbjct: 525 LMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFC 584

Query: 430 DMHMLPEAVKYAKGMAEKGI 449
            + ML +  +    M EKGI
Sbjct: 585 MLGMLEDGDRLLGWMLEKGI 604



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 94/390 (24%), Positives = 158/390 (40%), Gaps = 12/390 (3%)

Query: 98  KHSPYAWNLVVDLL---GKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDA 154
           K + Y +N ++ LL   GK+  F+A     + M ++ +     + ++   +     V+ A
Sbjct: 325 KPNRYTYNSIILLLCKIGKS--FEAEKVLREMMSQKIIPDNVVYTTLIHGFFKLGHVRTA 382

Query: 155 ITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEG 213
              FD M       D     +L+    + GK I+    F  ++   +KPD  TY  L++ 
Sbjct: 383 NKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDV 442

Query: 214 WEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSL-KRMMERG 272
           + K  ++ NA     EMV ++G  P N+  Y + +  L K   G  +T N L   M ++G
Sbjct: 443 YCKAGEMVNAFSLHNEMV-QMGMTP-NIVTYGALIDGLCK--HGELDTANELLDEMRKKG 498

Query: 273 CNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAA 332
               +  +           N+  A  +   M    G  PD   Y  +I  YC   +   A
Sbjct: 499 LQLNVCIYNSMVNGICKAGNIEQAIKLMKEM-EVAGIDPDAITYTTVIDAYCRLGDIDKA 557

Query: 333 MKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRV 392
            KLL EM+  G  P + T+N+L         L +   L   M++   V +       ++ 
Sbjct: 558 HKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQ 617

Query: 393 YMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVT 452
           +   +      K +K M     +  S T N+L+ G C    L EA    K M EKG   T
Sbjct: 618 HCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPT 677

Query: 453 PFALSKLKQILIKARKEAVYEELLKKCKAH 482
             + + L +   K +K     EL ++ + H
Sbjct: 678 VTSYNALIKRFYKKKKILEARELFEEMRGH 707



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 63/285 (22%), Positives = 123/285 (43%), Gaps = 12/285 (4%)

Query: 78  YSHPGPAVKFFRWSAYQLNDKHSP--YAWNLVVDLLGKNCLFDAMWDAIKSMKKENV-LS 134
           Y   G  V  F      +    +P    +  ++D L K+   D   + +  M+K+ + L+
Sbjct: 443 YCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLN 502

Query: 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR 194
           +  + S+ +    A  ++ AI     ME  G   D     +++ A CR G    A + L+
Sbjct: 503 VCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQ 562

Query: 195 -VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLK 253
            ++D  ++P   T+ +L+ G+     + +  +  G M +E G  PD +    +Y   + +
Sbjct: 563 EMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWM-LEKGIVPDAI----TYNTLMKQ 617

Query: 254 GC--DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRP 311
            C  + +  T    KRM  +G  P    + +  +     +NL+ A F++  M+ + G+ P
Sbjct: 618 HCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEK-GYVP 676

Query: 312 DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFE 356
               YN +I  +    +   A +L +EM  +G   D + YN   +
Sbjct: 677 TVTSYNALIKRFYKKKKILEARELFEEMRGHGLVADGEIYNFFVD 721



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 66/293 (22%), Positives = 115/293 (39%), Gaps = 40/293 (13%)

Query: 160 VMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIK-PDNDTYAILLEGWEKER 218
           V  +YG   +  + N ++ ++CR GK  +A + L  +D R   PD  +Y+ +++G+    
Sbjct: 248 VFCEYGISWNTTSYNIIIYSLCRLGKVKEAHRLLMQMDFRSSTPDVVSYSTVIDGYCHLG 307

Query: 219 DVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMT 278
           ++  A K   +M I+ G  P N   Y+S ++ L                           
Sbjct: 308 ELKKALKLMDDMQIK-GLKP-NRYTYNSIILLL--------------------------- 338

Query: 279 FFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDE 338
                   C  G++    + +   M  +I   PD  +Y  +I  +        A K  DE
Sbjct: 339 --------CKIGKSFEAEKVLREMMSQKI--IPDNVVYTTLIHGFFKLGHVRTANKWFDE 388

Query: 339 MVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDD 398
           M+     PD  TY  L +   +G K+ E   LF+EM+      +       + VY  + +
Sbjct: 389 MLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGE 448

Query: 399 PYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQV 451
              A      M++   +    T   L+ GLC    L  A +    M +KG+Q+
Sbjct: 449 MVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQL 501


>gi|380875521|gb|AFF27500.1| PPR domain-containing protein [Oryza sativa Indica Group]
          Length = 742

 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 86/335 (25%), Positives = 134/335 (40%), Gaps = 42/335 (12%)

Query: 136 ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR- 194
            TF ++   +V    ++ A+     M + GC      +N L++  C+ G+  DA  +++ 
Sbjct: 217 TTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQ 276

Query: 195 -VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLK 253
            + DG  +PD  TY   + G  +   V +A K    MV E G DPD V  Y+  +  L K
Sbjct: 277 EIADG-FEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQE-GHDPD-VFTYNIVVNCLCK 333

Query: 254 GCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDT 313
               + E    L +M++RGC P +T F        TG  L  A       V   G  PD 
Sbjct: 334 NGQ-LEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEA-LDLARQVTVKGVSPDV 391

Query: 314 HMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNE 373
           + +N++I+  C   +   A++L +EM  +G  PD  TYN L + L    KL +A      
Sbjct: 392 YTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKA------ 445

Query: 374 MVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHM 433
                                        +   K M    C   + T N ++ GLC    
Sbjct: 446 -----------------------------LDLLKDMESTGCPRSTITYNTIIDGLCKKMR 476

Query: 434 LPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARK 468
           + EA +    M  +GI       + L   L K +K
Sbjct: 477 IEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKK 511



 Score = 91.3 bits (225), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 103/423 (24%), Positives = 162/423 (38%), Gaps = 53/423 (12%)

Query: 71  EQVLKFSYSHPGPAVKFFRWSAYQLNDKHSP--YAWNLVVDLLGKNCLFDAMWDAIKSMK 128
           EQ+L      P P       +A    D  +P    +  ++  LG     D M   +  M+
Sbjct: 42  EQLLTALREQPDPDAALRMLNAALARDDFAPGPEVYEEIIRKLGAVGALDLMKVLVAEMR 101

Query: 129 KE-NVLSLATFASVFSSYVVADRVKDAITTF--DVMEQYGCKHDVFALNSLLSAICRDGK 185
           +E + + L    S   SY       DA+      +   +G + D    N LL+ +    K
Sbjct: 102 REGHQVKLGVVHSFLDSYEGQQLFDDAVDLILNQLQPLFGIQADTVVYNHLLNVLVEGSK 161

Query: 186 TIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAY 244
                     +  R IKPD  T+  L++   +   V  A     EM    G  PD     
Sbjct: 162 MKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSR-GVAPD----- 215

Query: 245 DSYLITLLKGC--DGIYETVNSLK-RMMERGCNPG-MTFFKLAFEECLTGQNLRGAEFIW 300
           ++   TL++G   +G  E    +K RM+E GC+   +T   L    C  G+      +I 
Sbjct: 216 ETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQ 275

Query: 301 GAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVK 360
             +    GF PD   YN  ++  C ++  G A+K++D MV  G  PD+ TYNI+   L K
Sbjct: 276 QEIAD--GFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCK 333

Query: 361 GRKLWEASGLFNEMVKNE--------NVLNHENCRA------------------------ 388
             +L EA G+ N+MV           N L    C                          
Sbjct: 334 NGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYT 393

Query: 389 ---AVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMA 445
               +       DP++A++ ++ M  + C+    T N L+  LC +  L +A+   K M 
Sbjct: 394 FNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDME 453

Query: 446 EKG 448
             G
Sbjct: 454 STG 456



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 87/362 (24%), Positives = 152/362 (41%), Gaps = 11/362 (3%)

Query: 110 LLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVA----DRVKDAITTFDVMEQYG 165
           L+   C    + DA+  +++E           ++++V      D V  A+   DVM Q G
Sbjct: 257 LINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEG 316

Query: 166 CKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERDVANAK 224
              DVF  N +++ +C++G+  +A   L ++VD    PD  T+  L+        +  A 
Sbjct: 317 HDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEAL 376

Query: 225 KTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPG-MTFFKLA 283
               ++ ++ G  PD V  ++  +  L K  D  +  +   + M   GC P  +T+  L 
Sbjct: 377 DLARQVTVK-GVSPD-VYTFNILINALCKVGDP-HLALRLFEEMKNSGCTPDEVTYNTLI 433

Query: 284 FEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNG 343
              C  G+  +  + +    +   G    T  YN +I   C       A ++ D+M   G
Sbjct: 434 DNLCSLGKLGKALDLLKD--MESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQG 491

Query: 344 AFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAI 403
              +  T+N L + L K +K+ +A GL N+M+      N+    + +  Y    D   A 
Sbjct: 492 ISRNAITFNTLIDGLCKDKKIDDAFGLINQMISEGLQPNNITYNSILTHYCKQGDIKKAA 551

Query: 404 KFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQIL 463
              + M  N       T   L+ GLC       A+K  +GM  KG++ TP A + + Q L
Sbjct: 552 DILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSL 611

Query: 464 IK 465
            +
Sbjct: 612 FR 613



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 73/337 (21%), Positives = 138/337 (40%), Gaps = 48/337 (14%)

Query: 80  HPGPAVKFFRWSAYQLNDKHSP--YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLA 136
           H G A+K        + + H P  + +N+VV+ L KN   +     +  M     L  + 
Sbjct: 301 HVGHALKVMD---VMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDIT 357

Query: 137 TFASVFSSYVVADRVKDA---------------ITTFDV--------------------M 161
           TF ++ ++    +R+++A               + TF++                    M
Sbjct: 358 TFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEM 417

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDND-TYAILLEGWEKERDV 220
           +  GC  D    N+L+  +C  GK   A   L+ ++    P +  TY  +++G  K+  +
Sbjct: 418 KNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRI 477

Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPG-MTF 279
             A++ F +M  ++     N   +++ +  L K    I +    + +M+  G  P  +T+
Sbjct: 478 EEAEEVFDQM--DLQGISRNAITFNTLIDGLCKD-KKIDDAFGLINQMISEGLQPNNITY 534

Query: 280 FKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEM 339
             +    C  G +++ A  I   M    GF  D   Y  +I+  C +  T  A+K+L  M
Sbjct: 535 NSILTHYCKQG-DIKKAADILETMTAN-GFEVDVVTYGTLINGLCKAGRTQVALKVLRGM 592

Query: 340 VYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK 376
              G  P  + YN + + L +   + +A  LF EM +
Sbjct: 593 RIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAE 629



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 58/260 (22%), Positives = 108/260 (41%), Gaps = 7/260 (2%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASVFSSYVVADRVKDAITTFDVM 161
            +N ++D L          D +K M+      S  T+ ++        R+++A   FD M
Sbjct: 428 TYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQM 487

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERDV 220
           +  G   +    N+L+  +C+D K  DA+  + +++   ++P+N TY  +L  + K+ D+
Sbjct: 488 DLQGISRNAITFNTLIDGLCKDKKIDDAFGLINQMISEGLQPNNITYNSILTHYCKQGDI 547

Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFF 280
             A      M    G++ D V  Y + +  L K        +  L+ M  +G  P    +
Sbjct: 548 KKAADILETMTAN-GFEVD-VVTYGTLINGLCKA-GRTQVALKVLRGMRIKGMRPTPKAY 604

Query: 281 KLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCY-SNETGAAMKLLDEM 339
               +      N+R A  ++  M   +G  PD   Y ++    C        A   + EM
Sbjct: 605 NPVLQSLFRRNNIRDALSLFREM-AEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEM 663

Query: 340 VYNGAFPDIQTYNILFEFLV 359
           V  G  P+  ++ +L E L+
Sbjct: 664 VDKGFIPEFSSFRMLAEGLL 683


>gi|356513957|ref|XP_003525674.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g40400-like [Glycine max]
          Length = 626

 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 89/373 (23%), Positives = 160/373 (42%), Gaps = 26/373 (6%)

Query: 90  WSAYQ----LNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSS 144
           W+ Y+    L    + Y +N++  +L K+   D +   +  M++E     L T+ ++ +S
Sbjct: 233 WAVYEEMGRLGIHRNAYTFNIMTHVLCKDGDTDKVTRFLDKMEEEGFEPDLVTYNTLVNS 292

Query: 145 YVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPD 203
           Y    R++DA   + +M   G   ++     L++ +C +GK  +A Q F ++V   I PD
Sbjct: 293 YCKKRRLEDAFYLYKIMYIRGVMPNLITHTVLMNGLCEEGKVKEAHQLFHQMVHRGIDPD 352

Query: 204 NDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVP--------AYDSYLITLLKGC 255
             +Y  L+ G+ +E  +   +    EM I  G  PD+V         A D  L++ L   
Sbjct: 353 VVSYNTLVSGYCREGKMQMCRSLLHEM-IGNGICPDSVTCRLIVEGFARDGKLLSALN-- 409

Query: 256 DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHM 315
                TV  LKR   R   P   +  L    C+ G+      F+    + + G+ P  + 
Sbjct: 410 -----TVVELKRF--RIKIPEDLYDYLIVALCIEGRPFAARSFLL--RISQDGYMPKINT 460

Query: 316 YNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
           YN ++   C  N    A+ L  EMV      ++  Y  +   L +  +  EA GL  EMV
Sbjct: 461 YNKLVESLCKFNNVEEALILKSEMVKRSMILNLVAYRAVISCLCRVNRTLEAEGLLEEMV 520

Query: 376 KNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLP 435
            +  + + E  RA +  Y + +    A+   K+         +E+ N +V   CD+  + 
Sbjct: 521 SSGILPDVEISRALINGYCEENKVDKAVSLLKFFANEFQVYDTESYNAVVKVFCDVGNVA 580

Query: 436 EAVKYAKGMAEKG 448
           E ++    + + G
Sbjct: 581 ELLELQDKLLKVG 593


>gi|115454009|ref|NP_001050605.1| Os03g0597200 [Oryza sativa Japonica Group]
 gi|28875991|gb|AAO60000.1| putative pentatricopeptide repeat protein [Oryza sativa Japonica
           Group]
 gi|108709658|gb|ABF97453.1| DEAD/DEAH box helicase family protein, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113549076|dbj|BAF12519.1| Os03g0597200 [Oryza sativa Japonica Group]
          Length = 742

 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 86/335 (25%), Positives = 134/335 (40%), Gaps = 42/335 (12%)

Query: 136 ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR- 194
            TF ++   +V    ++ A+     M + GC      +N L++  C+ G+  DA  +++ 
Sbjct: 217 TTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQ 276

Query: 195 -VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLK 253
            + DG  +PD  TY   + G  +   V +A K    MV E G DPD V  Y+  +  L K
Sbjct: 277 EIADG-FEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQE-GHDPD-VFTYNIVVNCLCK 333

Query: 254 GCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDT 313
               + E    L +M++RGC P +T F        TG  L  A       V   G  PD 
Sbjct: 334 NGQ-LEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEA-LDLARQVTVKGVSPDV 391

Query: 314 HMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNE 373
           + +N++I+  C   +   A++L +EM  +G  PD  TYN L + L    KL +A      
Sbjct: 392 YTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKA------ 445

Query: 374 MVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHM 433
                                        +   K M    C   + T N ++ GLC    
Sbjct: 446 -----------------------------LDLLKDMESTGCPRSTITYNTIIDGLCKKMR 476

Query: 434 LPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARK 468
           + EA +    M  +GI       + L   L K +K
Sbjct: 477 IEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKK 511



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 103/423 (24%), Positives = 162/423 (38%), Gaps = 53/423 (12%)

Query: 71  EQVLKFSYSHPGPAVKFFRWSAYQLNDKHSP--YAWNLVVDLLGKNCLFDAMWDAIKSMK 128
           EQ+L      P P       +A    D  +P    +  ++  LG     D M   +  M+
Sbjct: 42  EQLLTALREQPDPDAALRMLNAALARDDFAPGPEVYEEIIRKLGAVGALDLMKVLVAEMR 101

Query: 129 KE-NVLSLATFASVFSSYVVADRVKDAITTF--DVMEQYGCKHDVFALNSLLSAICRDGK 185
           +E + + L    S   SY       DA+      +   +G + D    N LL+ +    K
Sbjct: 102 REGHQVKLGVVHSFLDSYEGQQLFDDAVDLILNQLQPLFGIQADTVVYNHLLNVLVEGSK 161

Query: 186 TIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAY 244
                     +  R IKPD  T+  L++   +   V  A     EM    G  PD     
Sbjct: 162 MKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSR-GVAPD----- 215

Query: 245 DSYLITLLKGC--DGIYETVNSLK-RMMERGCNPG-MTFFKLAFEECLTGQNLRGAEFIW 300
           ++   TL++G   +G  E    +K RM+E GC+   +T   L    C  G+      +I 
Sbjct: 216 ETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQ 275

Query: 301 GAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVK 360
             +    GF PD   YN  ++  C ++  G A+K++D MV  G  PD+ TYNI+   L K
Sbjct: 276 QEIAD--GFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCK 333

Query: 361 GRKLWEASGLFNEMVKNE--------NVLNHENCRA------------------------ 388
             +L EA G+ N+MV           N L    C                          
Sbjct: 334 NGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYT 393

Query: 389 ---AVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMA 445
               +       DP++A++ ++ M  + C+    T N L+  LC +  L +A+   K M 
Sbjct: 394 FNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDME 453

Query: 446 EKG 448
             G
Sbjct: 454 STG 456



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 86/362 (23%), Positives = 151/362 (41%), Gaps = 11/362 (3%)

Query: 110 LLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVA----DRVKDAITTFDVMEQYG 165
           L+   C    + DA+  +++E           ++++V      D V  A+   DVM Q G
Sbjct: 257 LINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEG 316

Query: 166 CKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERDVANAK 224
              DVF  N +++ +C++G+  +A   L ++VD    PD  T+  L+        +  A 
Sbjct: 317 HDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEAL 376

Query: 225 KTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPG-MTFFKLA 283
               ++ ++ G  PD V  ++  +  L K  D  +  +   + M   GC P  +T+  L 
Sbjct: 377 DLARQVTVK-GVSPD-VYTFNILINALCKVGDP-HLALRLFEEMKNSGCTPDEVTYNTLI 433

Query: 284 FEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNG 343
              C  G+  +  + +    +   G    T  YN +I   C       A ++ D+M   G
Sbjct: 434 DNLCSLGKLGKALDLLKD--MESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQG 491

Query: 344 AFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAI 403
              +  T+N L + L K +K+ +A  L N+M+      N+    + +  Y    D   A 
Sbjct: 492 ISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAA 551

Query: 404 KFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQIL 463
              + M  N       T   L+ GLC       A+K  +GM  KG++ TP A + + Q L
Sbjct: 552 DILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSL 611

Query: 464 IK 465
            +
Sbjct: 612 FR 613



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 75/339 (22%), Positives = 140/339 (41%), Gaps = 52/339 (15%)

Query: 80  HPGPAVKFFRWSAYQLNDKHSP--YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLA 136
           H G A+K        + + H P  + +N+VV+ L KN   +     +  M     L  + 
Sbjct: 301 HVGHALKVMD---VMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDIT 357

Query: 137 TFASVFSSYVVADRVKDA---------------ITTFDV--------------------M 161
           TF ++ ++    +R+++A               + TF++                    M
Sbjct: 358 TFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEM 417

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDND-TYAILLEGWEKERDV 220
           +  GC  D    N+L+  +C  GK   A   L+ ++    P +  TY  +++G  K+  +
Sbjct: 418 KNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRI 477

Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG--CDGIYETVNSLKRMMERGCNPG-M 277
             A++ F +M  ++     N   +++ +  L K    D  +E +N   +M+  G  P  +
Sbjct: 478 EEAEEVFDQM--DLQGISRNAITFNTLIDGLCKDKKIDDAFELIN---QMISEGLQPNNI 532

Query: 278 TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLD 337
           T+  +    C  G +++ A  I   M    GF  D   Y  +I+  C +  T  A+K+L 
Sbjct: 533 TYNSILTHYCKQG-DIKKAADILETMTAN-GFEVDVVTYGTLINGLCKAGRTQVALKVLR 590

Query: 338 EMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK 376
            M   G  P  + YN + + L +   + +A  LF EM +
Sbjct: 591 GMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAE 629



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/260 (22%), Positives = 109/260 (41%), Gaps = 7/260 (2%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASVFSSYVVADRVKDAITTFDVM 161
            +N ++D L          D +K M+      S  T+ ++        R+++A   FD M
Sbjct: 428 TYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQM 487

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERDV 220
           +  G   +    N+L+  +C+D K  DA++ + +++   ++P+N TY  +L  + K+ D+
Sbjct: 488 DLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDI 547

Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFF 280
             A      M    G++ D V  Y + +  L K        +  L+ M  +G  P    +
Sbjct: 548 KKAADILETMTAN-GFEVD-VVTYGTLINGLCKA-GRTQVALKVLRGMRIKGMRPTPKAY 604

Query: 281 KLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCY-SNETGAAMKLLDEM 339
               +      N+R A  ++  M   +G  PD   Y ++    C        A   + EM
Sbjct: 605 NPVLQSLFRRNNIRDALSLFREM-AEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEM 663

Query: 340 VYNGAFPDIQTYNILFEFLV 359
           V  G  P+  ++ +L E L+
Sbjct: 664 VDKGFIPEFSSFRMLAEGLL 683


>gi|22296415|dbj|BAC10183.1| pentatricopeptide repeat protein-like [Oryza sativa Japonica Group]
          Length = 624

 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 91/352 (25%), Positives = 148/352 (42%), Gaps = 15/352 (4%)

Query: 119 AMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLS 178
           ++ DA+ S++  + +S  T  +        DR    +    +     C+ +  +   L+ 
Sbjct: 66  SLLDALPSVR--DAVSYNTVLTALCRRGHHDRAGALLRAMSLEPHPACRPNAVSYTVLMR 123

Query: 179 AICRDGKTIDAWQFLRVV-DGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWD 237
           A+C D     A   LR +    ++ D  TY  L+ G     +V  A +  GEM  E G +
Sbjct: 124 ALCADRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMC-ESGIE 182

Query: 238 PDNVPAYDSYLITLLKGCDGIYETVNSL-KRMMERGCNPGMTFFKLAFEECLTGQNLRGA 296
           P NV  Y S L    K   G +E V  +   M E+G  P +  +    +        + A
Sbjct: 183 P-NVVVYSSLLQGYCK--SGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKA 239

Query: 297 EFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFE 356
             +   MV R G  P+   YN++I+  C       A+ +L +M   G  PD+ TYN L +
Sbjct: 240 HGVMDMMVRR-GLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIK 298

Query: 357 FLVKGRKLWEASGLFNEMVKNENVL--NHENCRAAVRVYMDSDDPYVAIKFWKYMIENHC 414
            L    ++ EA  L  EMV+ +N++  N     + ++   D      A +    M E  C
Sbjct: 299 GLSDVLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGC 358

Query: 415 SDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKA 466
                T NLL+ GL  +H + +A++    M   G++   F  S    ILIK 
Sbjct: 359 MVNLVTYNLLIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYS----ILIKG 406



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 60/271 (22%), Positives = 122/271 (45%), Gaps = 10/271 (3%)

Query: 118 DAMWDAIKSMKKENVL--SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNS 175
           +AMW   + ++ +N++  ++ TF SV        R++ A     +ME+ GC  ++   N 
Sbjct: 308 EAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCMVNLVTYNL 367

Query: 176 LLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEV 234
           L+  + R  K   A + +  +    ++PD+ TY+IL++G+ K   V  A+     M    
Sbjct: 368 LIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSILIKGFCKMWQVDRAEDLLSTM---- 423

Query: 235 GWDPDNVPAYDSYLITLLKGCD-GIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNL 293
             D    P    Y+  L+  C+ G+ E   +L   M+      +  +           +L
Sbjct: 424 -RDRGIEPELFHYIPLLVAMCEQGMMERARNLFNEMDNNFPLDVVAYSTMIHGACKAGDL 482

Query: 294 RGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNI 353
           + A+ +  ++V   G  PD   Y+++I+++  S +  AA  +L +M  +G  PD+  ++ 
Sbjct: 483 KTAKELLKSIVDE-GLTPDAVTYSIVINMFAKSGDMEAANGVLKQMTASGFLPDVAVFDS 541

Query: 354 LFEFLVKGRKLWEASGLFNEMVKNENVLNHE 384
           L +      ++ +   L  EM+     L+ +
Sbjct: 542 LIQGYSTKGEINKVLELIREMITKNIALDSK 572



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 74/309 (23%), Positives = 126/309 (40%), Gaps = 31/309 (10%)

Query: 138 FASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVD 197
           +  +  S     + K A    D+M + G + +V   N L++ +C++G   +A   L+ + 
Sbjct: 223 YTGLIDSLCKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMS 282

Query: 198 GR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD 256
            + + PD  TY  L++G     ++  A     EMV        NV  ++S +  L   CD
Sbjct: 283 EKGVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQGL---CD 339

Query: 257 -GIYETVNSLKRMMER-GCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTH 314
            G       ++ MME  GC   +  + L     L    +R A  +   M   +G  PD+ 
Sbjct: 340 IGRMRQAFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMTS-LGLEPDSF 398

Query: 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
            Y+++I  +C   +   A  LL  M   G  P++  Y  L   + +   +  A  LFNE 
Sbjct: 399 TYSILIKGFCKMWQVDRAEDLLSTMRDRGIEPELFHYIPLLVAMCEQGMMERARNLFNE- 457

Query: 375 VKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHC--SDLSETGNLLVAGLCDMH 432
                              MD++ P   +  +  MI   C   DL +T   L+  + D  
Sbjct: 458 -------------------MDNNFPLDVVA-YSTMIHGACKAGDL-KTAKELLKSIVDEG 496

Query: 433 MLPEAVKYA 441
           + P+AV Y+
Sbjct: 497 LTPDAVTYS 505


>gi|296085006|emb|CBI28421.3| unnamed protein product [Vitis vinifera]
          Length = 740

 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 101/381 (26%), Positives = 161/381 (42%), Gaps = 6/381 (1%)

Query: 100 SPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTF 158
           S Y+ N ++  L K  + +   +  K M    +  SL TF ++ +      +V++A    
Sbjct: 162 SLYSCNTLLIQLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELIL 221

Query: 159 DVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKE 217
             + QY    DVF   SL+   CR+     A+  F R+V     P++ TY+ L+ G   E
Sbjct: 222 SQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNE 281

Query: 218 RDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGM 277
             V  A     EM IE G +P  V  Y +  IT L   +   E +  + RM +RGC P +
Sbjct: 282 GRVDEALDMLEEM-IEKGIEP-TVYTY-TLPITALCAIEHEEEAIELVARMKKRGCRPNV 338

Query: 278 TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLD 337
             +            L  A  ++  M+ + G  P+T  YN +I+  C       A+K+  
Sbjct: 339 QTYTALISGLSRLGKLEVAIGLYHKML-KEGLVPNTVTYNALINELCVGGRFSTALKIFH 397

Query: 338 EMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSD 397
            M  +G+  + QTYN + + L  G  + +A  LF +M+K   +         +  Y+   
Sbjct: 398 WMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKG 457

Query: 398 DPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALS 457
           +   A +    M EN C     T N LV+G      L  A  Y + M E G+   P + +
Sbjct: 458 NVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYT 517

Query: 458 KLKQILIKARKEAVYEELLKK 478
            L     K  K  +   LLK+
Sbjct: 518 ALIDGHSKDGKVDIALSLLKR 538



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 61/262 (23%), Positives = 116/262 (44%), Gaps = 11/262 (4%)

Query: 125 KSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDG 184
           K +K+  V +  T+ ++ +   V  R   A+  F  ME +G   +    N ++  +C  G
Sbjct: 363 KMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGG 422

Query: 185 KTIDAW-QFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPA 243
               A   F +++     P   TY  L+ G+  + +V NA +   +++ E G +PD    
Sbjct: 423 DIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLL-DLMKENGCEPDEW-T 480

Query: 244 YDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAM 303
           Y+  L++       +       + M+E G NP      +++   + G +  G   I  ++
Sbjct: 481 YNE-LVSGFSKWGKLESASFYFQEMVECGLNPN----PVSYTALIDGHSKDGKVDIALSL 535

Query: 304 VGRI---GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVK 360
           + R+   G  P+   YN +I+     N    A K+ D+MV  G  P++ TY  L + L +
Sbjct: 536 LKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCR 595

Query: 361 GRKLWEASGLFNEMVKNENVLN 382
             +   A  +F++M K + + N
Sbjct: 596 NGRTQFAFKIFHDMEKRKCLPN 617



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 77/319 (24%), Positives = 133/319 (41%), Gaps = 40/319 (12%)

Query: 84  AVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFS 143
           A+K F W     +  ++     ++  L     +  AM    K +K   + ++ T+ ++ +
Sbjct: 392 ALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLIN 451

Query: 144 SYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDA-WQFLRVVDGRIKP 202
            Y+    V +A    D+M++ GC+ D +  N L+S   + GK   A + F  +V+  + P
Sbjct: 452 GYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNP 511

Query: 203 DNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG-------- 254
           +  +Y  L++G  K+  V  A      M  E+G +P NV +Y++ +  L K         
Sbjct: 512 NPVSYTALIDGHSKDGKVDIALSLLKRME-EMGCNP-NVESYNAVINGLSKENRFSEAEK 569

Query: 255 -CDGIYET------------VNSLKR-------------MMERGCNPGM-TFFKLAFEEC 287
            CD + E             ++ L R             M +R C P + T+  L +  C
Sbjct: 570 ICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLC 629

Query: 288 LTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPD 347
             G+    AE +   M  R G  PD   +  +I  +        A  LL  MV  G  P+
Sbjct: 630 QEGKA-DEAEILLKEM-ERKGLAPDEVTFTSLIDGFVVLGRIDHAFLLLRRMVDMGCKPN 687

Query: 348 IQTYNILFEFLVKGRKLWE 366
            +TY++L + L K   L E
Sbjct: 688 YRTYSVLLKGLQKECLLLE 706



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 80/355 (22%), Positives = 144/355 (40%), Gaps = 16/355 (4%)

Query: 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDV 160
           Y + L +  L      +   + +  MKK     ++ T+ ++ S      +++ AI  +  
Sbjct: 304 YTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHK 363

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDN-DTYAILLEGWEKERD 219
           M + G   +    N+L++ +C  G+   A +    ++G     N  TY  +++G     D
Sbjct: 364 MLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGD 423

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLIT-LLKGCDGIYETVNSLKRMMERGCNPGMT 278
           +  A   F E ++++G  P  V  Y++ +   L KG   +      L  M E GC P   
Sbjct: 424 IEKAMVLF-EKMLKMGPLP-TVVTYNTLINGYLTKG--NVNNAARLLDLMKENGCEPD-- 477

Query: 279 FFKLAFEECLTG----QNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMK 334
             +  + E ++G      L  A F +  MV   G  P+   Y  +I  +    +   A+ 
Sbjct: 478 --EWTYNELVSGFSKWGKLESASFYFQEMV-ECGLNPNPVSYTALIDGHSKDGKVDIALS 534

Query: 335 LLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYM 394
           LL  M   G  P++++YN +   L K  +  EA  + ++MV+   + N       +    
Sbjct: 535 LLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLC 594

Query: 395 DSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
            +     A K +  M +  C     T + L+ GLC      EA    K M  KG+
Sbjct: 595 RNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGL 649



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 81/175 (46%), Gaps = 4/175 (2%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVM 161
           ++N V++ L K   F         M ++ +L ++ T+ ++        R + A   F  M
Sbjct: 550 SYNAVINGLSKENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDM 609

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDV 220
           E+  C  +++  +SL+  +C++GK  +A   L+ ++ + + PD  T+  L++G+     +
Sbjct: 610 EKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGFVVLGRI 669

Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNP 275
            +A      MV ++G  P N   Y   L  L K C  + E +  L      GCNP
Sbjct: 670 DHAFLLLRRMV-DMGCKP-NYRTYSVLLKGLQKECLLLEEKIFPLVDNYFLGCNP 722


>gi|147768815|emb|CAN62672.1| hypothetical protein VITISV_031896 [Vitis vinifera]
          Length = 530

 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 80/319 (25%), Positives = 137/319 (42%), Gaps = 23/319 (7%)

Query: 136 ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR- 194
            TF ++     V  ++ +A+  FD     G + DV    +L++ +C+ G T  A + LR 
Sbjct: 183 TTFNTLIRGLCVEGKIGEALHLFDKTIGEGFQPDVVTYGTLMNGLCKVGNTSAAIRLLRS 242

Query: 195 VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG 254
           +V    +P+   Y  +++   K+R V  A   F EM+ + G  PD +  Y+S +  L   
Sbjct: 243 MVQKNCRPNVIAYNTIIDSLCKDRQVTEAFNLFSEMITK-GISPD-IFTYNSLIHALCNL 300

Query: 255 CDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTH 314
           C+  + T   L  M+     P +  F    +       +  A  +   M+ R G  PD  
Sbjct: 301 CEWKHVT-TLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKR-GVEPDVV 358

Query: 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
            Y  ++  +C  +E   A+K+ D MV+ G  P++++YNIL     + +++ +A GL  +M
Sbjct: 359 TYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQM 418

Query: 375 --------VKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMI-ENHCSDLSETGNLLV 425
                       N L H  C      +        AI  +  M+      DL  T  +L+
Sbjct: 419 SLQGLIADTVTYNTLIHGLCHVGRLQH--------AIALFHEMVASGQIPDLV-TYRILL 469

Query: 426 AGLCDMHMLPEAVKYAKGM 444
             LC  H L EA+   K +
Sbjct: 470 DYLCKNHHLAEAMVLLKAI 488



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 75/346 (21%), Positives = 147/346 (42%), Gaps = 25/346 (7%)

Query: 117 FDAMWDAIKSMKKENVL----SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFA 172
           F+ + DA+ S  +   +    S   F  + +S          ++    M+ +G   DV+ 
Sbjct: 90  FNTLDDALSSFNRMLHMHPPPSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYT 149

Query: 173 LNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMV 231
           LN L+++ C   +   A+  L +++    +PDN T+  L+ G   E  +  A   F + +
Sbjct: 150 LNILINSFCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTI 209

Query: 232 IEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQ 291
            E G+ PD V  Y + +  L K        +  L+ M+++ C P +  +    +     +
Sbjct: 210 GE-GFQPD-VVTYGTLMNGLCK-VGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDR 266

Query: 292 NLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTY 351
            +  A  ++  M+ + G  PD   YN +I   C   E      LL+EMV +   P++  +
Sbjct: 267 QVTEAFNLFSEMITK-GISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVF 325

Query: 352 NILFEFLVKGRKLWEASGLFNEMVKNE--------NVLNHENCRAAVRVYMDSDDPYVAI 403
           + + + L K   +  A  + + M+K            L   +C   +R  MD      A+
Sbjct: 326 STVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHC---LRSEMDE-----AV 377

Query: 404 KFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
           K +  M+   C     + N+L+ G C +  + +A+   + M+ +G+
Sbjct: 378 KVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGL 423



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 66/249 (26%), Positives = 112/249 (44%), Gaps = 9/249 (3%)

Query: 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FL 193
           + T+ ++ +          AI     M Q  C+ +V A N+++ ++C+D +  +A+  F 
Sbjct: 217 VVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTEAFNLFS 276

Query: 194 RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLK 253
            ++   I PD  TY  L+       +  +      EMV      P NV  + + +  L K
Sbjct: 277 EMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMV-NSKIMP-NVVVFSTVVDALCK 334

Query: 254 GCDGIYETVNSLKRMM-ERGCNPG-MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRP 311
             +G+    + +  MM +RG  P  +T+  L    CL  + +  A  ++  MV + G  P
Sbjct: 335 --EGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSE-MDEAVKVFDTMVHK-GCVP 390

Query: 312 DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLF 371
           +   YN++I+ YC       AM LL++M   G   D  TYN L   L    +L  A  LF
Sbjct: 391 NVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALF 450

Query: 372 NEMVKNENV 380
           +EMV +  +
Sbjct: 451 HEMVASGQI 459



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 64/294 (21%), Positives = 117/294 (39%), Gaps = 53/294 (18%)

Query: 124 IKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICR 182
           ++SM ++N   ++  + ++  S     +V +A   F  M   G   D+F  NSL+ A+C 
Sbjct: 240 LRSMVQKNCRPNVIAYNTIIDSLCKDRQVTEAFNLFSEMITKGISPDIFTYNSLIHALCN 299

Query: 183 DGKTIDAWQFL-----RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWD 237
               +  W+ +      +V+ +I P+   ++ +++   KE  +A A     +M+I+ G +
Sbjct: 300 ----LCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVV-DMMIKRGVE 354

Query: 238 PDNVPAYDSYLITLLKGC--DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRG 295
           PD V    +Y   +   C    + E V     M+ +GC P +  + +        Q +  
Sbjct: 355 PDVV----TYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDK 410

Query: 296 AEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTY---- 351
           A  +   M  + G   DT  YN +I   C+      A+ L  EMV +G  PD+ TY    
Sbjct: 411 AMGLLEQMSLQ-GLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILL 469

Query: 352 -------------------------------NILFEFLVKGRKLWEASGLFNEM 374
                                          NI  + + +  +L  A  LF+ +
Sbjct: 470 DYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCRAGELEAARDLFSNL 523



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 64/156 (41%)

Query: 308 GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEA 367
           G  PD +  N++I+ +C+    G A  +L +++  G  PD  T+N L   L    K+ EA
Sbjct: 142 GIPPDVYTLNILINSFCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEA 201

Query: 368 SGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAG 427
             LF++ +      +       +       +   AI+  + M++ +C       N ++  
Sbjct: 202 LHLFDKTIGEGFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDS 261

Query: 428 LCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQIL 463
           LC    + EA      M  KGI    F  + L   L
Sbjct: 262 LCKDRQVTEAFNLFSEMITKGISPDIFTYNSLIHAL 297


>gi|3258568|gb|AAC24378.1| Unknown protein [Arabidopsis thaliana]
          Length = 691

 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 87/353 (24%), Positives = 150/353 (42%), Gaps = 28/353 (7%)

Query: 65  VSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAI 124
           +S+ TV Q L+     P   ++FF W + +    H   ++ L+++ LG+    +   + +
Sbjct: 66  ISRTTVLQTLRL-IKVPADGLRFFDWVSNK-GFSHKEQSFFLMLEFLGRARNLNVARNFL 123

Query: 125 KSMKKEN----VLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAI 180
            S+++ +     L    F S+  SY  A   ++++  F  M+Q G    V   NSLLS +
Sbjct: 124 FSIERRSNGCVKLQDRYFNSLIRSYGNAGLFQESVKLFQTMKQMGISPSVLTFNSLLSIL 183

Query: 181 CRDGKT---IDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIE---- 233
            + G+T    D +  +R   G + PD+ T+  L+ G+ K   V  A + F +M +     
Sbjct: 184 LKRGRTGMAHDLFDEMRRTYG-VTPDSYTFNTLINGFCKNSMVDEAFRIFKDMELAGKVK 242

Query: 234 ---------VGWDPDNVPAYDSYLITLLKG-C--DGIYETVNSLKRMMERGCNPGMTFFK 281
                    +    D  P   SY  TL++G C    I E V     M+ RG  P    + 
Sbjct: 243 IAHNVLSGMLKKATDVHPNVVSY-TTLVRGYCMKQEIDEAVLVFHDMLSRGLKPNAVTYN 301

Query: 282 LAFEECLTGQNL-RGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMV 340
              +            + + G       F PD   +N++I  +C +    AAMK+  EM+
Sbjct: 302 TLIKGLSEAHRYDEIKDILIGGNDAFTTFAPDACTFNILIKAHCDAGHLDAAMKVFQEML 361

Query: 341 YNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVY 393
                PD  +Y++L   L    +   A  LFNE+ + E +L  + C+     Y
Sbjct: 362 NMKLHPDSASYSVLIRTLCMRNEFDRAETLFNELFEKEVLLGKDECKPLAAAY 414



 Score = 45.8 bits (107), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 63/307 (20%), Positives = 118/307 (38%), Gaps = 38/307 (12%)

Query: 102 YAWNLVVDLLGKNCLFDAMWDAIKSMK-------KENVLS------------LATFASVF 142
           Y +N +++   KN + D  +   K M+         NVLS            + ++ ++ 
Sbjct: 210 YTFNTLINGFCKNSMVDEAFRIFKDMELAGKVKIAHNVLSGMLKKATDVHPNVVSYTTLV 269

Query: 143 SSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR--- 199
             Y +   + +A+  F  M   G K +    N+L+  +    +  +    L  + G    
Sbjct: 270 RGYCMKQEIDEAVLVFHDMLSRGLKPNAVTYNTLIKGLSEAHRYDEIKDIL--IGGNDAF 327

Query: 200 --IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDG 257
               PD  T+ IL++       +  A K F EM + +   PD+  A  S LI  L   + 
Sbjct: 328 TTFAPDACTFNILIKAHCDAGHLDAAMKVFQEM-LNMKLHPDS--ASYSVLIRTLCMRNE 384

Query: 258 IYETVNSLKRMMERG-------CNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFR 310
                     + E+        C P    +   FE        + AE ++  ++ R    
Sbjct: 385 FDRAETLFNELFEKEVLLGKDECKPLAAAYNPMFEYLCANGKTKQAEKVFRQLMKRGVQD 444

Query: 311 PDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGL 370
           P +  Y  +I+ +C   +   A +LL  M+     PD++TY +L + L+K  +   A   
Sbjct: 445 PPS--YKTLITGHCREGKFKPAYELLVLMLRREFVPDLETYELLIDGLLKIGEALLAHDT 502

Query: 371 FNEMVKN 377
              M+++
Sbjct: 503 LQRMLRS 509


>gi|147827256|emb|CAN64312.1| hypothetical protein VITISV_027954 [Vitis vinifera]
          Length = 655

 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 105/422 (24%), Positives = 164/422 (38%), Gaps = 67/422 (15%)

Query: 50  PSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVD 109
           P P    ++          TV Q L    +    A++FF W   Q    H+   +N ++D
Sbjct: 272 PEPLSNPIISPNSTSFDHSTVRQTLSCYANDWKRALEFFDWVQTQCGFNHTTDTYNGMID 331

Query: 110 LLGKNCLFDAMWDAIKSMKKENVL--SLATFASVFSSYVVADRVKDAITTFDVMEQYGCK 167
           +LGK   FD +W  I+ MK + V   +  TF  VF  Y  A  V++A+  +   E++  +
Sbjct: 332 ILGKFFEFDLIWVLIQRMKADPVAYPNHVTFRFVFKRYAAAHLVEEAMNAYYRTEEFNLR 391

Query: 168 HDVFALNSLLSAICRDGKTIDAWQ-FLR-VVDGRIKPDNDTYAILLEGWEKERDVANAKK 225
            D  + ++L+ A+C     I+A + FL+   D     D   Y I+L GW           
Sbjct: 392 -DETSYSNLIDALCEYKHVIEAEELFLKESKDLVFNDDVKIYNIILRGW----------- 439

Query: 226 TFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFE 285
            F   V+E         A   Y     KG        N++ R +  G + G+ F    F 
Sbjct: 440 -FKNGVVEECKSGKPWRAVKLYKEMKKKGIRLDVVAYNTVIRAI--GLSEGVDFSIRVFR 496

Query: 286 ECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAF 345
           E                    +G  P+   YN +I L C +     A  + D+M   G  
Sbjct: 497 E-----------------XKEVGCEPNVVTYNTIIKLLCENGRIREAYGVFDQMREKGYA 539

Query: 346 PDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAI-- 403
           P++ TY+  F  + K +++      F+ M+            + VR  MD+   YV +  
Sbjct: 540 PNVITYHCFFGCIEKPKQILRT---FDRMIN-----------SGVRPRMDT---YVMLMK 582

Query: 404 KF------------WKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQV 451
           KF            WK M E  CS  +   N L+  L    M+  A KY + M  KG+  
Sbjct: 583 KFGRWGFLRPVFIVWKKMEEQGCSPDACAYNALIDALVQKGMVDLARKYEEEMLAKGLSA 642

Query: 452 TP 453
            P
Sbjct: 643 KP 644


>gi|449532420|ref|XP_004173179.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g05670, mitochondrial-like [Cucumis sativus]
          Length = 748

 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 86/320 (26%), Positives = 140/320 (43%), Gaps = 13/320 (4%)

Query: 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR 194
           + ++++V   Y     +K A+   D M+  G K + +  NS++  +C+ GK+ +A + LR
Sbjct: 293 VVSYSTVIDGYCHLGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLR 352

Query: 195 -VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLK 253
            ++  +I PDN  Y  L+ G+ K   V  A K F EM+          P Y +Y  TL++
Sbjct: 353 EMMSQKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEML-----SKKISPDYITY-TTLIQ 406

Query: 254 GCDG---IYETVNSLKRMMERGCNPG-MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGF 309
           G      + E  N    M+ RG  P  +T+  L    C  G+ +  A  +   MV ++G 
Sbjct: 407 GFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGE-MVNAFSLHNEMV-QMGM 464

Query: 310 RPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASG 369
            P+   Y  +I   C   E   A +LLDEM   G   ++  YN +   + K   + +A  
Sbjct: 465 TPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIK 524

Query: 370 LFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLC 429
           L  EM       +       +  Y    D   A K  + M++        T N+L+ G C
Sbjct: 525 LMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFC 584

Query: 430 DMHMLPEAVKYAKGMAEKGI 449
            + ML +  +    M EKGI
Sbjct: 585 MLGMLEDGDRLLGWMLEKGI 604



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 95/390 (24%), Positives = 158/390 (40%), Gaps = 12/390 (3%)

Query: 98  KHSPYAWNLVVDLL---GKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDA 154
           K + Y +N ++ LL   GK+  F+A     + M ++ +     + ++   +     V+ A
Sbjct: 325 KPNRYTYNSIILLLCKIGKS--FEAEKVLREMMSQKIIPDNVVYTTLIHGFFKLGHVRTA 382

Query: 155 ITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEG 213
              FD M       D     +L+    + GK I+    F  ++   +KPD  TY  L++ 
Sbjct: 383 NKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDV 442

Query: 214 WEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSL-KRMMERG 272
           + K  ++ NA     EMV ++G  P N+  Y + +  L K   G  +T N L   M ++G
Sbjct: 443 YCKAGEMVNAFSLHNEMV-QMGMTP-NIVTYGALIDGLCK--HGELDTANELLDEMRKKG 498

Query: 273 CNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAA 332
               +  +           N+  A  +   M    G  PD   Y  +I  YC   +   A
Sbjct: 499 LQLNVCIYNSMVNGICKAGNIEQAIKLMKEM-EVAGIDPDAITYTTVIDAYCRLGDIDKA 557

Query: 333 MKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRV 392
            KLL EM+  G  P + T+N+L         L +   L   M++   V +       ++ 
Sbjct: 558 HKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQ 617

Query: 393 YMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVT 452
           +   +      K +K M     +  S T N+L+ G C    L EA    K M EKG   T
Sbjct: 618 HCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPT 677

Query: 453 PFALSKLKQILIKARKEAVYEELLKKCKAH 482
             + + L +   K RK     EL ++ + H
Sbjct: 678 VTSYNALIKRFYKKRKFXEARELFEEMRGH 707



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 63/285 (22%), Positives = 123/285 (43%), Gaps = 12/285 (4%)

Query: 78  YSHPGPAVKFFRWSAYQLNDKHSP--YAWNLVVDLLGKNCLFDAMWDAIKSMKKENV-LS 134
           Y   G  V  F      +    +P    +  ++D L K+   D   + +  M+K+ + L+
Sbjct: 443 YCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLN 502

Query: 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR 194
           +  + S+ +    A  ++ AI     ME  G   D     +++ A CR G    A + L+
Sbjct: 503 VCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQ 562

Query: 195 -VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLK 253
            ++D  ++P   T+ +L+ G+     + +  +  G M +E G  PD +    +Y   + +
Sbjct: 563 EMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWM-LEKGIVPDAI----TYNTLMKQ 617

Query: 254 GC--DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRP 311
            C  + +  T    KRM  +G  P    + +  +     +NL+ A F++  M+ + G+ P
Sbjct: 618 HCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEK-GYVP 676

Query: 312 DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFE 356
               YN +I  +    +   A +L +EM  +G   D + YN   +
Sbjct: 677 TVTSYNALIKRFYKKRKFXEARELFEEMRGHGLVADGEIYNFFVD 721



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 66/293 (22%), Positives = 115/293 (39%), Gaps = 40/293 (13%)

Query: 160 VMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIK-PDNDTYAILLEGWEKER 218
           V  +YG   +  + N ++ ++CR GK  +A + L  +D R   PD  +Y+ +++G+    
Sbjct: 248 VFCEYGISWNTTSYNIIIYSLCRLGKVKEAHRLLMQMDFRSSTPDVVSYSTVIDGYCHLG 307

Query: 219 DVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMT 278
           ++  A K   +M I+ G  P N   Y+S ++ L                           
Sbjct: 308 ELKKALKLMDDMQIK-GLKP-NRYTYNSIILLL--------------------------- 338

Query: 279 FFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDE 338
                   C  G++    + +   M  +I   PD  +Y  +I  +        A K  DE
Sbjct: 339 --------CKIGKSFEAEKVLREMMSQKI--IPDNVVYTTLIHGFFKLGHVRTANKWFDE 388

Query: 339 MVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDD 398
           M+     PD  TY  L +   +G K+ E   LF+EM+      +       + VY  + +
Sbjct: 389 MLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGE 448

Query: 399 PYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQV 451
              A      M++   +    T   L+ GLC    L  A +    M +KG+Q+
Sbjct: 449 MVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQL 501


>gi|242038885|ref|XP_002466837.1| hypothetical protein SORBIDRAFT_01g014995 [Sorghum bicolor]
 gi|241920691|gb|EER93835.1| hypothetical protein SORBIDRAFT_01g014995 [Sorghum bicolor]
          Length = 1014

 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 82/306 (26%), Positives = 128/306 (41%), Gaps = 15/306 (4%)

Query: 77  SYSHPGPAVKFFRWSAYQLNDKHSPYA---WNLVVDLLGKNCLFDAMWDAIKSMKKENVL 133
           SY H G  V+ F      +   HSP      NL+  L     L  A       +   + +
Sbjct: 457 SYCHRGNIVEAFTVYDAMVRYGHSPNVCTYQNLLRGLCQGGHLVQAKQFMFCLLDIPSAI 516

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
              TF ++         + +A+   + M +  C  D+     LLS  CR GK + A   L
Sbjct: 517 DEKTFNALLLGICKYGTLDEALDLCEKMVKNNCLPDIHTYTILLSGFCRKGKILPALIML 576

Query: 194 RV-VDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
           ++ +D  + PD   Y  LL G   E  V  A   F E++ + G   D + AY+S +   L
Sbjct: 577 QMMLDKGVVPDTVAYTCLLNGLINEGQVKAASYVFQEIICKEGLYADCI-AYNSLMNGYL 635

Query: 253 KGCDGIYETVNSLKRMM----ERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIG 308
           KG +     +N++KRMM    +    P    + +     + G     + +++  MV R G
Sbjct: 636 KGGN-----INTIKRMMSDMYQSEVYPNSASYNILMHGYVKGGQFSKSLYLYKYMV-RKG 689

Query: 309 FRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEAS 368
            RPD   Y ++I           A+K L++MV  G FPD   ++IL     +  K+  A 
Sbjct: 690 IRPDNVTYRLLILGLSECGLIDIAVKFLEKMVLEGIFPDRLVFDILITAFSEKSKMHNAL 749

Query: 369 GLFNEM 374
            LFN M
Sbjct: 750 QLFNCM 755



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 79/368 (21%), Positives = 149/368 (40%), Gaps = 33/368 (8%)

Query: 105 NLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQY 164
           N++++ L  N  F    D ++ MK   + +  T+ ++   YV   R K A+   + ME+ 
Sbjct: 227 NILLNSLCTNGEFRKAEDMLQKMKTCRLSNSVTYNTILHWYVKKGRFKAALCVLEDMERD 286

Query: 165 GCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERDVANA 223
               D++  N ++  +CR  ++  A+  L R+    + PD  TY  L+ G+  E  + +A
Sbjct: 287 SIPADIYTYNIMIDKLCRIKRSARAFLLLKRMRKDDLIPDECTYNTLINGFFGEGKINHA 346

Query: 224 KKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDG----------------------IYET 261
              F  M+ +       VP+  +Y   +   C                        I + 
Sbjct: 347 HYVFNHMLRQTF-----VPSVATYTTMIDGYCRNRRIDKALSVLSEMQITGVMPSEISKA 401

Query: 262 VNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMIS 321
              LK M+E G +P +  +     E +  +    AE     M  R+    D+  +N +I 
Sbjct: 402 KQILKSMLEDGIDPDIVTYSALINEGMITE----AEHFRQYM-SRMKISFDSVSFNCIID 456

Query: 322 LYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVL 381
            YC+      A  + D MV  G  P++ TY  L   L +G  L +A      ++   + +
Sbjct: 457 SYCHRGNIVEAFTVYDAMVRYGHSPNVCTYQNLLRGLCQGGHLVQAKQFMFCLLDIPSAI 516

Query: 382 NHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYA 441
           + +   A +           A+   + M++N+C     T  +L++G C    +  A+   
Sbjct: 517 DEKTFNALLLGICKYGTLDEALDLCEKMVKNNCLPDIHTYTILLSGFCRKGKILPALIML 576

Query: 442 KGMAEKGI 449
           + M +KG+
Sbjct: 577 QMMLDKGV 584



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 68/317 (21%), Positives = 128/317 (40%), Gaps = 43/317 (13%)

Query: 136 ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR- 194
            +F  +  SY     + +A T +D M +YG   +V    +LL  +C+ G  + A QF+  
Sbjct: 449 VSFNCIIDSYCHRGNIVEAFTVYDAMVRYGHSPNVCTYQNLLRGLCQGGHLVQAKQFMFC 508

Query: 195 VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG 254
           ++D     D  T+  LL G  K   +  A     +MV       + +P   +Y I L   
Sbjct: 509 LLDIPSAIDEKTFNALLLGICKYGTLDEALDLCEKMV-----KNNCLPDIHTYTILLSGF 563

Query: 255 C--DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD 312
           C    I   +  L+ M+++G  P    +       +    ++ A +++  ++ + G   D
Sbjct: 564 CRKGKILPALIMLQMMLDKGVVPDTVAYTCLLNGLINEGQVKAASYVFQEIICKEGLYAD 623

Query: 313 THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFN 372
              YN +++ Y          +++ +M  +  +P+  +YNIL    VKG       G F+
Sbjct: 624 CIAYNSLMNGYLKGGNINTIKRMMSDMYQSEVYPNSASYNILMHGYVKG-------GQFS 676

Query: 373 EMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMH 432
           +                            ++  +KYM+       + T  LL+ GL +  
Sbjct: 677 K----------------------------SLYLYKYMVRKGIRPDNVTYRLLILGLSECG 708

Query: 433 MLPEAVKYAKGMAEKGI 449
           ++  AVK+ + M  +GI
Sbjct: 709 LIDIAVKFLEKMVLEGI 725



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 81/405 (20%), Positives = 144/405 (35%), Gaps = 75/405 (18%)

Query: 117 FDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNS 175
            D   D  + M K N L  + T+  + S +    ++  A+    +M   G   D  A   
Sbjct: 534 LDEALDLCEKMVKNNCLPDIHTYTILLSGFCRKGKILPALIMLQMMLDKGVVPDTVAYTC 593

Query: 176 LLSA-----------------ICRDGKTIDAWQFLRVVDGRIK----------------- 201
           LL+                  IC++G   D   +  +++G +K                 
Sbjct: 594 LLNGLINEGQVKAASYVFQEIICKEGLYADCIAYNSLMNGYLKGGNINTIKRMMSDMYQS 653

Query: 202 ---PDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGI 258
              P++ +Y IL+ G+ K    + +   +  MV + G  PDNV      LI  L  C  I
Sbjct: 654 EVYPNSASYNILMHGYVKGGQFSKSLYLYKYMVRK-GIRPDNVTY--RLLILGLSECGLI 710

Query: 259 YETVNSLKRMMERGCNPGMTFFKL---AFEE------------CLTGQNLRGAEFIWGAM 303
              V  L++M+  G  P    F +   AF E            C+    +  +   + AM
Sbjct: 711 DIAVKFLEKMVLEGIFPDRLVFDILITAFSEKSKMHNALQLFNCMKWLRMSPSSKTYSAM 770

Query: 304 VG-------------------RIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGA 344
           +                    ++G +P+   Y  +++  C   +   A +L +EM   G 
Sbjct: 771 INGLIRKNYLDQSHEVLREMLQVGLQPNHTHYIALVNAKCRVGKIDRAFRLKEEMKALGI 830

Query: 345 FPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIK 404
            P     + +   L K  KL EA  +F+ M+++  V         +           A+ 
Sbjct: 831 VPADVAESSIIRGLCKCGKLEEAVIVFSTMMRSGMVPTVATFTTLMHCLCKESKIADALH 890

Query: 405 FWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
             + M          + N+L+ GLC    + +A+   + M  KG+
Sbjct: 891 LKRLMESCRLKVDVVSYNVLITGLCKDKRISDALDLYEEMKSKGL 935


>gi|147780655|emb|CAN66818.1| hypothetical protein VITISV_004776 [Vitis vinifera]
          Length = 1037

 Score = 91.3 bits (225), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 78/312 (25%), Positives = 130/312 (41%), Gaps = 46/312 (14%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVL--SLATFASVFSSYVVADRVKDAITTFDV 160
            + L++    K C  D     ++ M++E  L      +  +   Y    ++ DA+   D 
Sbjct: 298 TYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDE 357

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERD 219
           M + G K ++F  NSL++  C+ G+  +A   + R+VD  +KPD+ +Y  LL+G+ +E  
Sbjct: 358 MLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGH 417

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLK---RMMERGCNPG 276
            + A     +M+ E G +P  V  Y+    TLLKG   +    ++L+    MM+ G  P 
Sbjct: 418 TSEAFNLCDKMLQE-GIEP-TVLTYN----TLLKGLCRVGAFDDALQIWHLMMKXGVAPD 471

Query: 277 MTFFKLAFEECLTGQNLRGAEFIWGAMVGR------------------------------ 306
              +    +     +N  GA  +W  ++ R                              
Sbjct: 472 EVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMISGLCKMGKMVEAEEIFD 531

Query: 307 ----IGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGR 362
               +G  PD   Y  +I  YC ++  G A K+   M      P I+ YN L   L K R
Sbjct: 532 KMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREXISPSIEMYNSLISGLFKSR 591

Query: 363 KLWEASGLFNEM 374
           +L E + L  EM
Sbjct: 592 RLVEXTDLLTEM 603



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 97/454 (21%), Positives = 183/454 (40%), Gaps = 28/454 (6%)

Query: 33  PNLPPTIKTLCEIIANTPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSA 92
           P  P  +  +C ++         + + K     S + V+ VL+    +P  ++ FF++ +
Sbjct: 38  PAPPELVSRICRLVLLRRC----NAISKLNFVFSDDIVDAVLRNLRLNPTASLGFFQFVS 93

Query: 93  YQLNDKHSPYAWNLVVDLLGKNCLFD--------------------AMWDAIKSMKKENV 132
            Q N + +  ++  +V +L +  ++D                     +WD +  + +E  
Sbjct: 94  KQQNFRPNVKSYCKLVHILSRGRMYDETRAYLNQLVDLCKFKDRGNVIWDELVGVYREFA 153

Query: 133 LSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDA-WQ 191
            S   F  +   YV     K+A+  FD M + G    + + NSLL+ + ++G+T  A + 
Sbjct: 154 FSPTVFDMILKVYVEKGLTKNALYVFDNMGKCGRIPSLRSCNSLLNNLVKNGETHTAHYV 213

Query: 192 FLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITL 251
           + +++   I PD    +I++  + K+  V  A   F + +  +G +P N+  Y S LI  
Sbjct: 214 YQQMIRVGIVPDVFMVSIMVNAFCKDGKVDEAA-GFVKKMENLGVEP-NIVTYHS-LING 270

Query: 252 LKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRP 311
                 +      LK M E+G +  +  + L  +       +  AE +   M       P
Sbjct: 271 YVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVP 330

Query: 312 DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLF 371
           D   Y ++I  YC + +   A++LLDEM+  G   ++   N L     K  ++ EA G+ 
Sbjct: 331 DERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVI 390

Query: 372 NEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDM 431
             MV      +  +    +  Y        A      M++        T N L+ GLC +
Sbjct: 391 TRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRV 450

Query: 432 HMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIK 465
               +A++    M + G+       S L   L K
Sbjct: 451 GAFDDALQIWHLMMKXGVAPDEVGYSTLLDGLFK 484



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 76/349 (21%), Positives = 132/349 (37%), Gaps = 43/349 (12%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           T+ ++   Y  A  V  A      ME+      +   NSL+S + +  + ++    L  +
Sbjct: 544 TYRTLIDGYCKASNVGQAFKVKGAMEREXISPSIEMYNSLISGLFKSRRLVEXTDLLTEM 603

Query: 197 DGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEM------------------------- 230
             R + P+  TY  L++GW KE  +  A  ++ EM                         
Sbjct: 604 GIRGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMVSGLYRLGRI 663

Query: 231 -----VIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCN----PGMTFFK 281
                +++   D    P ++ +L + ++     Y  +  +   ++  C     P    + 
Sbjct: 664 DEANLLMQKMVDHGFFPDHECFLKSDIR-----YAAIQKIADSLDESCKTFLLPNNIVYN 718

Query: 282 LAFEE-CLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMV 340
           +A    C TG+      F   +M+   GF PD   Y  +I  Y  +     A +L DEM+
Sbjct: 719 IAIAGLCKTGKVDDARRFF--SMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEML 776

Query: 341 YNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPY 400
             G  P+I TYN L   L K   +  A  LF+++ +     N       +  Y    +  
Sbjct: 777 RRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNMD 836

Query: 401 VAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
            A K    MIE   S    T + L+ GLC    +  ++K    M + G+
Sbjct: 837 AAFKLKDKMIEEGISPSVVTYSALINGLCKHGDIERSMKLLNQMIKAGV 885



 Score = 38.5 bits (88), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 26/112 (23%), Positives = 54/112 (48%), Gaps = 2/112 (1%)

Query: 127 MKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKT 186
           +++  V ++ T+ ++ +    ++ V  A   F  + Q G   +V   N+L+   C+ G  
Sbjct: 776 LRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNM 835

Query: 187 IDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWD 237
             A++   ++++  I P   TY+ L+ G  K  D+  + K   +M I+ G D
Sbjct: 836 DAAFKLKDKMIEEGISPSVVTYSALINGLCKHGDIERSMKLLNQM-IKAGVD 886


>gi|222631252|gb|EEE63384.1| hypothetical protein OsJ_18196 [Oryza sativa Japonica Group]
          Length = 378

 Score = 91.3 bits (225), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 87/352 (24%), Positives = 151/352 (42%), Gaps = 15/352 (4%)

Query: 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR 194
           +  F     S+  A  +K+A+  F++M  +G    V + N LL A+ ++G   +A Q   
Sbjct: 1   MDAFKIAIKSFAAAGEIKNAVGVFEMMRTHGFDDGVESFNCLLVALAQEGLGREANQVFD 60

Query: 195 VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG 254
            +  R  PD  +Y  L+  W   R++  A + + EM +E G  PD V  +++ +  LL+G
Sbjct: 61  RMRDRYAPDLRSYTALMLAWCNARNLVEAGRVWNEM-LENGLKPD-VVVHNTMIEGLLRG 118

Query: 255 CDGIYETVNSLKRMMERGCNPGM-TFFKLAFEECLTGQ---NLRGAEFIWGAMVGRIGFR 310
                E V   + M  +G  P + T+  L  + C  G+    +R  E +       +G +
Sbjct: 119 -QRRPEAVKMFELMKAKGPAPNVWTYTMLIRDHCKRGKMDMAMRCFEEMQD-----VGCQ 172

Query: 311 PDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGL 370
           PD   Y  ++  Y  +        LL+EM   G  PD +TYN L + L       +A+ +
Sbjct: 173 PDVATYTCLLVGYGNAKRMDRVTALLEEMTQKGCPPDGRTYNALIKLLTNRNMPDDAARI 232

Query: 371 FNEMVKNENVLNHENCRAAVRVYMDSDDPY-VAIKFWKYMIENH-CSDLSETGNLLVAGL 428
           + +M+K             ++ Y      Y +    W+ M     C D++ +  + + G 
Sbjct: 233 YKKMIKKGLEPTIHTYNMMMKSYFLGGRNYMMGCAVWEEMHRKGICPDVN-SYTVFINGH 291

Query: 429 CDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKCK 480
                  EA KY + M +KG++      +K      KA K  +  EL +K K
Sbjct: 292 IRHGRPEEACKYIEEMIQKGMKTPQIDYNKFAADFSKAGKPDILYELAQKVK 343


>gi|10177952|dbj|BAB11311.1| unnamed protein product [Arabidopsis thaliana]
          Length = 680

 Score = 91.3 bits (225), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 81/324 (25%), Positives = 133/324 (41%), Gaps = 40/324 (12%)

Query: 53  TVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLG 112
            ++  L    I +S + V  VL          V FF W+  +        ++++++  LG
Sbjct: 103 AIQKSLSSLGIGLSIDIVADVLNRGNLSGEAMVTFFDWAVREPGVTKDVGSYSVILRALG 162

Query: 113 KNCLFDAMWDAIKSMKKENV-LSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVF 171
           +  LF  M D +K M  E V   L        S+V    V+ AI  F+  E +G K    
Sbjct: 163 RRKLFSFMMDVLKGMVCEGVNPDLECLTIAMDSFVRVHYVRRAIELFEESESFGVKCSTE 222

Query: 172 ALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMV 231
           + N+LL  +C       A        G I  D+ +Y I++ GW K  +V   +K   EMV
Sbjct: 223 SFNALLRCLCERSHVSAAKSVFNAKKGNIPFDSCSYNIMISGWSKLGEVEEMEKVLKEMV 282

Query: 232 IEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQ 291
            E G+ PD +    S+LI  L     I ++V     +  +G                   
Sbjct: 283 -ESGFGPDCLSY--SHLIEGLGRTGRINDSVEIFDNIKHKG------------------- 320

Query: 292 NLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTY 351
           N+                 PD ++YN MI  +  + +   +M+    M+     P+++TY
Sbjct: 321 NV-----------------PDANVYNAMICNFISARDFDESMRYYRRMLDEECEPNLETY 363

Query: 352 NILFEFLVKGRKLWEASGLFNEMV 375
           + L   L+KGRK+ +A  +F EM+
Sbjct: 364 SKLVSGLIKGRKVSDALEIFEEML 387



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 86/168 (51%), Gaps = 3/168 (1%)

Query: 283 AFEECLTGQN-LRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVY 341
           A   CL  ++ +  A+ ++ A  G I F  D+  YN+MIS +    E     K+L EMV 
Sbjct: 226 ALLRCLCERSHVSAAKSVFNAKKGNIPF--DSCSYNIMISGWSKLGEVEEMEKVLKEMVE 283

Query: 342 NGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYV 401
           +G  PD  +Y+ L E L +  ++ ++  +F+ +    NV +     A +  ++ + D   
Sbjct: 284 SGFGPDCLSYSHLIEGLGRTGRINDSVEIFDNIKHKGNVPDANVYNAMICNFISARDFDE 343

Query: 402 AIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
           ++++++ M++  C    ET + LV+GL     + +A++  + M  +G+
Sbjct: 344 SMRYYRRMLDEECEPNLETYSKLVSGLIKGRKVSDALEIFEEMLSRGV 391


>gi|20219038|gb|AAM15782.1|AC104428_3 Putative indole-3-acetate beta-glucosyltransferase [Oryza sativa
           Japonica Group]
 gi|108706351|gb|ABF94146.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
           Japonica Group]
 gi|125585039|gb|EAZ25703.1| hypothetical protein OsJ_09536 [Oryza sativa Japonica Group]
          Length = 648

 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 88/351 (25%), Positives = 156/351 (44%), Gaps = 8/351 (2%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVM 161
            +N V+  L ++ ++D  W+  K M    V   + +F  +   +     +++A+  +  M
Sbjct: 228 TYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEM 287

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDG-RIKPDNDTYAILLEGWEKERDV 220
              G K D+ + + L+    R GK   A  +LR +    + PD   Y +++ G+ +   +
Sbjct: 288 RHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMVIGGFCRAGLM 347

Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGM-TF 279
           ++A +   EMV   G  PD V  Y++ L  L K    + +    L  M ERG  P + TF
Sbjct: 348 SDALRVRDEMV-GCGCLPD-VVTYNTLLNGLCKE-RRLLDAEGLLNEMRERGVPPDLCTF 404

Query: 280 FKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEM 339
             L    C+ G+ L  A  ++  M+ +   RPD   YN +I   C   +   A  L D+M
Sbjct: 405 TTLIHGYCIEGK-LDKALQLFDTMLNQ-RLRPDIVTYNTLIDGMCRQGDLDKANDLWDDM 462

Query: 340 VYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDP 399
                FP+  TY+IL +   +  ++ +A G  +EM+    + N     + ++ Y  S + 
Sbjct: 463 HSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNV 522

Query: 400 YVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQ 450
               KF + M+ N  S    T N L+ G      + +A K    M ++ +Q
Sbjct: 523 SKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQ 573



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 91/353 (25%), Positives = 134/353 (37%), Gaps = 70/353 (19%)

Query: 49  TPSPTVEDVLDKTLI--RVSQETVEQV-LKFSYSHPGPAVK--------------FFRWS 91
           TP P V D+L +T    R  +E  E   L   +  P PA                     
Sbjct: 83  TPQPRVFDLLIRTYTQSRKPREAFEAFRLILDHRVPIPAAASNALLAALSRAGWPHLAAD 142

Query: 92  AYQL----NDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYV 146
           AY+L    N + + Y  N++V    K   FD +   I  M+K  V   + T   +  +  
Sbjct: 143 AYRLVFSSNSEVNTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARF 202

Query: 147 VADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDG-RIKPDND 205
            A   + A+   D M   G K  +   NS+L  +CR G    AW+  + +D   + PD  
Sbjct: 203 RAGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVR 262

Query: 206 TYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSL 265
           ++ IL+ G+ +  ++  A K +                                      
Sbjct: 263 SFTILIGGFCRVGEIEEALKIY-------------------------------------- 284

Query: 266 KRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGR----IGFRPDTHMYNMMIS 321
           K M  RG  P +  F      CL G   R  +        R     G  PD  +Y M+I 
Sbjct: 285 KEMRHRGIKPDLVSF-----SCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMVIG 339

Query: 322 LYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
            +C +     A+++ DEMV  G  PD+ TYN L   L K R+L +A GL NEM
Sbjct: 340 GFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEM 392



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 71/275 (25%), Positives = 127/275 (46%), Gaps = 19/275 (6%)

Query: 110 LLGKNCLFDAMWDAIKSMKKENV-----LSLATFASVFSSYVVADRVKDAITTFDVMEQY 164
           ++G  C    M DA++ ++ E V       + T+ ++ +      R+ DA    + M + 
Sbjct: 337 VIGGFCRAGLMSDALR-VRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRER 395

Query: 165 GCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDVANA 223
           G   D+    +L+   C +GK   A Q F  +++ R++PD  TY  L++G  ++ D+  A
Sbjct: 396 GVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKA 455

Query: 224 KKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD--GIYETVNSLKRMMERGCNPG-MTFF 280
              + +M        +  P + +Y I +   C+   + +    L  M+ +G  P  MT+ 
Sbjct: 456 NDLWDDM-----HSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYN 510

Query: 281 KLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMV 340
            +    C +G   +G +F+   MV ++   PD   YN +I  Y   ++   A KLL+ M 
Sbjct: 511 SIIKGYCRSGNVSKGQKFLQKMMVNKVS--PDLITYNTLIHGYIKEDKMHDAFKLLNMME 568

Query: 341 YNGAFPDIQTYNILFE-FLVKGRKLWEASGLFNEM 374
                PD+ TYN+L   F V G  + EA  +F +M
Sbjct: 569 KEKVQPDVVTYNMLINGFSVHG-NVQEAGWIFEKM 602



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 64/281 (22%), Positives = 120/281 (42%), Gaps = 19/281 (6%)

Query: 109 DLLGKNCLFDAMWDAIKSMKKENVLS----------LATFASVFSSYVVADRVKDAITTF 158
           D++  N L + +    + +  E +L+          L TF ++   Y +  ++  A+  F
Sbjct: 365 DVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLF 424

Query: 159 DVMEQYGCKHDVFALNSLLSAICRDG---KTIDAWQFLRVVDGRIKPDNDTYAILLEGWE 215
           D M     + D+   N+L+  +CR G   K  D W  +   +  I P++ TY+IL++   
Sbjct: 425 DTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSRE--IFPNHVTYSILIDSHC 482

Query: 216 KERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNP 275
           ++  V +A     EM I  G  P N+  Y+S +    +  + + +    L++MM    +P
Sbjct: 483 EKGQVEDAFGFLDEM-INKGILP-NIMTYNSIIKGYCRSGN-VSKGQKFLQKMMVNKVSP 539

Query: 276 GMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKL 335
            +  +       +    +  A F    M+ +   +PD   YNM+I+ +        A  +
Sbjct: 540 DLITYNTLIHGYIKEDKMHDA-FKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWI 598

Query: 336 LDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK 376
            ++M   G  PD  TY  +    V      EA  L +EM++
Sbjct: 599 FEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQ 639


>gi|125587025|gb|EAZ27689.1| hypothetical protein OsJ_11637 [Oryza sativa Japonica Group]
          Length = 650

 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 86/335 (25%), Positives = 134/335 (40%), Gaps = 42/335 (12%)

Query: 136 ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR- 194
            TF ++   +V    ++ A+     M + GC      +N L++  C+ G+  DA  +++ 
Sbjct: 125 TTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQ 184

Query: 195 -VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLK 253
            + DG  +PD  TY   + G  +   V +A K    MV E G DPD V  Y+  +  L K
Sbjct: 185 EIADG-FEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQE-GHDPD-VFTYNIVVNCLCK 241

Query: 254 GCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDT 313
               + E    L +M++RGC P +T F        TG  L  A       V   G  PD 
Sbjct: 242 NGQ-LEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEA-LDLARQVTVKGVSPDV 299

Query: 314 HMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNE 373
           + +N++I+  C   +   A++L +EM  +G  PD  TYN L + L    KL +A      
Sbjct: 300 YTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKA------ 353

Query: 374 MVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHM 433
                                        +   K M    C   + T N ++ GLC    
Sbjct: 354 -----------------------------LDLLKDMESTGCPRSTITYNTIIDGLCKKMR 384

Query: 434 LPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARK 468
           + EA +    M  +GI       + L   L K +K
Sbjct: 385 IEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKK 419



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 82/349 (23%), Positives = 130/349 (37%), Gaps = 75/349 (21%)

Query: 136 ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRV 195
             +  + +  V   ++K   + +  M   G K DV   N+L+ A+CR  +   A   L  
Sbjct: 55  VVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEE 114

Query: 196 VDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG 254
           +  R + PD  T+  L++G+ +E  +  A +    M                    L  G
Sbjct: 115 MSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARM--------------------LEMG 154

Query: 255 CDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTH 314
           C     TVN L             + KL   E   G       +I   +    GF PD  
Sbjct: 155 CSATKVTVNVLIN----------GYCKLGRVEDALG-------YIQQEIAD--GFEPDQI 195

Query: 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
            YN  ++  C ++  G A+K++D MV  G  PD+ TYNI+   L K  +L EA G+ N+M
Sbjct: 196 TYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQM 255

Query: 375 VKNE--------NVLNHENCRA---------------------------AVRVYMDSDDP 399
           V           N L    C                              +       DP
Sbjct: 256 VDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDP 315

Query: 400 YVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448
           ++A++ ++ M  + C+    T N L+  LC +  L +A+   K M   G
Sbjct: 316 HLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTG 364



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 81/331 (24%), Positives = 139/331 (41%), Gaps = 7/331 (2%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RV 195
           T+ +  +     D V  A+   DVM Q G   DVF  N +++ +C++G+  +A   L ++
Sbjct: 196 TYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQM 255

Query: 196 VDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
           VD    PD  T+  L+        +  A     ++ ++ G  PD V  ++  +  L K  
Sbjct: 256 VDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVK-GVSPD-VYTFNILINALCKVG 313

Query: 256 DGIYETVNSLKRMMERGCNPG-MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTH 314
           D  +  +   + M   GC P  +T+  L    C  G+  +  + +    +   G    T 
Sbjct: 314 DP-HLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKD--MESTGCPRSTI 370

Query: 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
            YN +I   C       A ++ D+M   G   +  T+N L + L K +K+ +A  L N+M
Sbjct: 371 TYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQM 430

Query: 375 VKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHML 434
           +      N+    + +  Y    D   A    + M  N       T   L+ GLC     
Sbjct: 431 ISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRT 490

Query: 435 PEAVKYAKGMAEKGIQVTPFALSKLKQILIK 465
             A+K  +GM  KG++ TP A + + Q L +
Sbjct: 491 QVALKVLRGMRIKGMRPTPKAYNPVLQSLFR 521



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 75/339 (22%), Positives = 140/339 (41%), Gaps = 52/339 (15%)

Query: 80  HPGPAVKFFRWSAYQLNDKHSP--YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLA 136
           H G A+K        + + H P  + +N+VV+ L KN   +     +  M     L  + 
Sbjct: 209 HVGHALKVMD---VMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDIT 265

Query: 137 TFASVFSSYVVADRVKDA---------------ITTFDV--------------------M 161
           TF ++ ++    +R+++A               + TF++                    M
Sbjct: 266 TFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEM 325

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDND-TYAILLEGWEKERDV 220
           +  GC  D    N+L+  +C  GK   A   L+ ++    P +  TY  +++G  K+  +
Sbjct: 326 KNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRI 385

Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG--CDGIYETVNSLKRMMERGCNPG-M 277
             A++ F +M  ++     N   +++ +  L K    D  +E +N   +M+  G  P  +
Sbjct: 386 EEAEEVFDQM--DLQGISRNAITFNTLIDGLCKDKKIDDAFELIN---QMISEGLQPNNI 440

Query: 278 TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLD 337
           T+  +    C  G +++ A  I   M    GF  D   Y  +I+  C +  T  A+K+L 
Sbjct: 441 TYNSILTHYCKQG-DIKKAADILETMTAN-GFEVDVVTYGTLINGLCKAGRTQVALKVLR 498

Query: 338 EMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK 376
            M   G  P  + YN + + L +   + +A  LF EM +
Sbjct: 499 GMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAE 537



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/260 (22%), Positives = 109/260 (41%), Gaps = 7/260 (2%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASVFSSYVVADRVKDAITTFDVM 161
            +N ++D L          D +K M+      S  T+ ++        R+++A   FD M
Sbjct: 336 TYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQM 395

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERDV 220
           +  G   +    N+L+  +C+D K  DA++ + +++   ++P+N TY  +L  + K+ D+
Sbjct: 396 DLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDI 455

Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFF 280
             A      M    G++ D V  Y + +  L K        +  L+ M  +G  P    +
Sbjct: 456 KKAADILETMTAN-GFEVD-VVTYGTLINGLCKA-GRTQVALKVLRGMRIKGMRPTPKAY 512

Query: 281 KLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCY-SNETGAAMKLLDEM 339
               +      N+R A  ++  M   +G  PD   Y ++    C        A   + EM
Sbjct: 513 NPVLQSLFRRNNIRDALSLFREM-AEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEM 571

Query: 340 VYNGAFPDIQTYNILFEFLV 359
           V  G  P+  ++ +L E L+
Sbjct: 572 VDKGFIPEFSSFRMLAEGLL 591



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 40/174 (22%), Positives = 76/174 (43%), Gaps = 10/174 (5%)

Query: 283 AFEECLTGQNL--RGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLD--- 337
           +F +   GQ L     + I   +    G + DT +YN ++++       G+ MKLL+   
Sbjct: 22  SFLDSYEGQQLFDDAVDLILNQLQPLFGIQADTVVYNHLLNVLV----EGSKMKLLESVY 77

Query: 338 -EMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDS 396
            EM   G  PD+ T+N L + L +  ++  A  +  EM       +       ++ +++ 
Sbjct: 78  SEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEE 137

Query: 397 DDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQ 450
                A++    M+E  CS    T N+L+ G C +  + +A+ Y +     G +
Sbjct: 138 GSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFE 191



 Score = 43.9 bits (102), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 50/232 (21%), Positives = 90/232 (38%), Gaps = 3/232 (1%)

Query: 235 GWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLR 294
           G  PD V  +++ +  L +    +   V  L+ M  RG  P  T F    +  +   ++ 
Sbjct: 84  GIKPD-VVTFNTLMKALCRA-HQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIE 141

Query: 295 GAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNIL 354
            A  +   M+  +G        N++I+ YC       A+  + + + +G  PD  TYN  
Sbjct: 142 AALRVKARML-EMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTF 200

Query: 355 FEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHC 414
              L +   +  A  + + MV+  +  +       V     +     A      M++  C
Sbjct: 201 VNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGC 260

Query: 415 SDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKA 466
                T N L+A LC  + L EA+  A+ +  KG+    +  + L   L K 
Sbjct: 261 LPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKV 312


>gi|242069957|ref|XP_002450255.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
 gi|241936098|gb|EES09243.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
          Length = 924

 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 77/313 (24%), Positives = 147/313 (46%), Gaps = 25/313 (7%)

Query: 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ--F 192
           + T+ ++      A  V  A   F  M + G K +    N+++  +C+  + +D  +  F
Sbjct: 225 VVTYNTIIDGLCKAQEVDRAEDVFQQMVEKGVKPNNVTYNTIIDGLCK-AQEVDMAEGVF 283

Query: 193 LRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
            ++VD  +KP N TY  +++G  K + V  A+  F +M I+ G  PD+V  Y++ +  L 
Sbjct: 284 QKMVDKGVKPSNVTYNTIIDGLCKAQAVDRAEGVFQQM-IDRGVKPDHV-TYNTIIDGLC 341

Query: 253 KGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD 312
           K    I +     ++M+++G  P    + +  +     Q++  AE ++  M+ + G +P+
Sbjct: 342 KA-QAIDKAEGVFQQMIDKGVKPDNLTYTIIIDGLCKAQSVDRAEGVFQQMIDK-GVKPN 399

Query: 313 THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFN 372
              YN +I  Y  + +    ++ + EM  +   PD+ TY +L ++L K  K  EA  LF+
Sbjct: 400 NGTYNCLIHGYLSTGQWEEVVQRIKEMSAHDLEPDVFTYGLLLDYLCKNGKCNEARSLFD 459

Query: 373 EMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVA-GLCDM 431
            M++       +  + +V +Y         I    Y  +   S++ +  NL+VA G+   
Sbjct: 460 SMIR-------KGIKPSVTIY--------GIMLHGYGKKGALSEMHDLLNLMVANGISPN 504

Query: 432 HMLPEAV--KYAK 442
           H +   V   YAK
Sbjct: 505 HRIFNTVICAYAK 517



 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 70/294 (23%), Positives = 123/294 (41%), Gaps = 46/294 (15%)

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRV-VDGR---IKPDNDTYAILLEGWEK 216
           M + GC+  V + N+LL  +C   +  +A + L + VDG+     PD  +Y I++ G+  
Sbjct: 146 MPEVGCRLGVVSYNTLLKGLCDRRRAEEARELLHMMVDGQDSSCSPDVVSYNIVINGFFN 205

Query: 217 ERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPG 276
           E  V  A   F    +E+G  PD V  Y++ +  L K  + +    +  ++M+E+G  P 
Sbjct: 206 EGQVDKAYSLF----LEMGVSPD-VVTYNTIIDGLCKAQE-VDRAEDVFQQMVEKGVKPN 259

Query: 277 MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLL 336
              +    +     Q +  AE ++  MV + G +P    YN +I   C +     A  + 
Sbjct: 260 NVTYNTIIDGLCKAQEVDMAEGVFQKMVDK-GVKPSNVTYNTIIDGLCKAQAVDRAEGVF 318

Query: 337 DEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDS 396
            +M+  G  PD  TYN + + L K + + +A G+F +M+                     
Sbjct: 319 QQMIDRGVKPDHVTYNTIIDGLCKAQAIDKAEGVFQQMI--------------------- 357

Query: 397 DDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQ 450
            D  V      Y I             ++ GLC    +  A    + M +KG++
Sbjct: 358 -DKGVKPDNLTYTI-------------IIDGLCKAQSVDRAEGVFQQMIDKGVK 397



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 85/372 (22%), Positives = 157/372 (42%), Gaps = 9/372 (2%)

Query: 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDV 160
           + + L++D L KN   +       SM ++ +  S+  +  +   Y     + +     ++
Sbjct: 436 FTYGLLLDYLCKNGKCNEARSLFDSMIRKGIKPSVTIYGIMLHGYGKKGALSEMHDLLNL 495

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERD 219
           M   G   +    N+++ A  +     +    F+++    + P+  TY  L++   K   
Sbjct: 496 MVANGISPNHRIFNTVICAYAKRAMIDEVMHIFIKMKQQGLSPNVVTYGTLIDALCKLGR 555

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTF 279
           V +A   F +M+ E G  P+NV  ++S L+  L   D   +       M+ +G  P + F
Sbjct: 556 VDDAVLQFNQMINE-GVTPNNV-VFNS-LVYGLCTVDKWEKVEELFLEMLNQGIRPDIVF 612

Query: 280 FKLAF-EECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDE 338
           F       C  G+ +     I  +MV  +G +PD   YN +I  +C+++    A+KLLD 
Sbjct: 613 FNTVLCNLCKEGRVMEARRLI-DSMVC-MGLKPDVISYNTLIDGHCFASRMDEAVKLLDG 670

Query: 339 MVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDD 398
           MV  G  P+I +YN L     K  ++  A  LF EM++       E     +     S  
Sbjct: 671 MVSAGLKPNIVSYNTLLHGYCKAGRIDNAYCLFREMLRKGVTPGVETYNTILNGLFRSGR 730

Query: 399 PYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSK 458
              A + +  MI++       T ++++ G C  +   EA K  + +    +Q+     + 
Sbjct: 731 FSEARELYVNMIKSRKLWSICTYSIILDGFCKNNCFDEAFKIFQSLCSMDLQLDIITFNI 790

Query: 459 LKQILIK-ARKE 469
           +   L K  RKE
Sbjct: 791 MIDGLFKGGRKE 802



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 85/375 (22%), Positives = 149/375 (39%), Gaps = 55/375 (14%)

Query: 153 DAITTFDVMEQYGCKHDVFALNSLLSAI----CRDGKTIDAWQF---LRVVDGRIKPDND 205
           DA+  FD +  +     V ALN LLS +    C     +   +F   LR    ++ PD  
Sbjct: 26  DALKLFDELLLHARPASVRALNQLLSVVSRAKCSSSSKLAVSRFNRMLRDCSNKVAPDCC 85

Query: 206 TYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG-CDG--IYETV 262
           TY+I++  + +   +      FG ++++ GW  D++         LLKG CD   + E +
Sbjct: 86  TYSIVIGCFCRIGRLELGFAAFG-LILKTGWRVDDIVVNQ-----LLKGLCDTKRVGEAM 139

Query: 263 NSLKRMM-ERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMV----------------- 304
           + L R M E GC  G+  +    +     +    A  +   MV                 
Sbjct: 140 HVLLRQMPEVGCRLGVVSYNTLLKGLCDRRRAEEARELLHMMVDGQDSSCSPDVVSYNIV 199

Query: 305 -------GRI----------GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPD 347
                  G++          G  PD   YN +I   C + E   A  +  +MV  G  P+
Sbjct: 200 INGFFNEGQVDKAYSLFLEMGVSPDVVTYNTIIDGLCKAQEVDRAEDVFQQMVEKGVKPN 259

Query: 348 IQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWK 407
             TYN + + L K +++  A G+F +MV      ++      +     +     A   ++
Sbjct: 260 NVTYNTIIDGLCKAQEVDMAEGVFQKMVDKGVKPSNVTYNTIIDGLCKAQAVDRAEGVFQ 319

Query: 408 YMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKA- 466
            MI+        T N ++ GLC    + +A    + M +KG++      + +   L KA 
Sbjct: 320 QMIDRGVKPDHVTYNTIIDGLCKAQAIDKAEGVFQQMIDKGVKPDNLTYTIIIDGLCKAQ 379

Query: 467 ---RKEAVYEELLKK 478
              R E V+++++ K
Sbjct: 380 SVDRAEGVFQQMIDK 394



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 77/317 (24%), Positives = 128/317 (40%), Gaps = 21/317 (6%)

Query: 138 FASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVV 196
           F +V  +     RV +A    D M   G K DV + N+L+   C   +  +A + L  +V
Sbjct: 613 FNTVLCNLCKEGRVMEARRLIDSMVCMGLKPDVISYNTLIDGHCFASRMDEAVKLLDGMV 672

Query: 197 DGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD 256
              +KP+  +Y  LL G+ K   + NA   F EM +  G  P  V  Y++ L  L +   
Sbjct: 673 SAGLKPNIVSYNTLLHGYCKAGRIDNAYCLFREM-LRKGVTP-GVETYNTILNGLFR--S 728

Query: 257 GIYET-----VNSLK-RMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFR 310
           G +       VN +K R +   C   +         C          F     +  +  +
Sbjct: 729 GRFSEARELYVNMIKSRKLWSICTYSIILDGFCKNNCFD------EAFKIFQSLCSMDLQ 782

Query: 311 PDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGL 370
            D   +N+MI           AM L   +  NG  P + TY ++ E L++   L E   L
Sbjct: 783 LDIITFNIMIDGLFKGGRKEDAMDLFAAIPANGLVPSVVTYRLIAENLIEEGSLEELDCL 842

Query: 371 FNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCD 430
           F+ M K+    N     A +R  +D  +   A  +   + E + S  + T ++L++    
Sbjct: 843 FSVMEKSGTAPNSHMLNALIRKLLDRGEIPRAGAYLSKLDEKNFSLEASTTSMLIS---- 898

Query: 431 MHMLPEAVKYAKGMAEK 447
           +    E  ++AK + EK
Sbjct: 899 LFSREEYQQHAKSLPEK 915


>gi|147858101|emb|CAN78867.1| hypothetical protein VITISV_041982 [Vitis vinifera]
          Length = 962

 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 96/362 (26%), Positives = 154/362 (42%), Gaps = 6/362 (1%)

Query: 100 SPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTF 158
           S Y+ N ++  L K  + +   +  K M    +  SL TF ++ +      +V++A    
Sbjct: 204 SLYSCNTLLIQLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELIL 263

Query: 159 DVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKE 217
             + QY    DVF   SL+   CR+     A+  F R+V     P++ TY+ L+ G   E
Sbjct: 264 SQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNE 323

Query: 218 RDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGM 277
             V  A     EM IE G +P  V  Y +  IT L   +   E +  + RM +RGC P +
Sbjct: 324 GRVDEALDMLEEM-IEKGIEP-TVYTY-TLPITALCAIEHEEEAIELVARMKKRGCRPNV 380

Query: 278 TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLD 337
             +            L  A  ++  M+ + G  P+T  YN +I+  C       A+K+  
Sbjct: 381 QTYTALISGLSRLGKLEVAIGLYHKML-KEGLVPNTVTYNALINELCVGGRFSTALKIFH 439

Query: 338 EMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSD 397
            M  +G+  + QTYN + + L  G  + +A  LF +M+K   +         +  Y+   
Sbjct: 440 WMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKG 499

Query: 398 DPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALS 457
           +   A +    M EN C     T N LV+G      L  A  Y + M E G+   P + +
Sbjct: 500 NVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYT 559

Query: 458 KL 459
            L
Sbjct: 560 TL 561



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 76/302 (25%), Positives = 130/302 (43%), Gaps = 30/302 (9%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVM 161
           ++N V++ L K   F         M ++ +L ++ T+ ++        R + A   F  M
Sbjct: 592 SYNAVINGLSKENRFSEAEKICDKMAEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDM 651

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDV 220
           E+  C  +++  +SL+  +C++GK  +A   L+ ++ + + PD  T+  L++G+     +
Sbjct: 652 EKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGFVVLGRI 711

Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETV------------------ 262
            +A      MV +VG  P N   Y   L  L K C  + E V                  
Sbjct: 712 DHAFLLLRRMV-DVGCKP-NYRTYSVLLKGLQKECLLLEEKVAVQHEAVYSFSPHEKDVN 769

Query: 263 -----NSLKRMMERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMY 316
                N L RM E GC P + T+  L    C  G+    AE +   M  R GF PD  +Y
Sbjct: 770 FEIVSNLLARMSEIGCEPTLDTYSTLVSGLCRKGR-FYEAEQLVKDMKER-GFCPDREIY 827

Query: 317 NMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK 376
             ++  +C + E   A+K+   +   G    +  Y  L   L K  ++ EA  LF+ M++
Sbjct: 828 YSLLIAHCKNLEVDHALKIFHSIEAKGFQLHLSIYRALICALCKAGQVEEAQALFDNMLE 887

Query: 377 NE 378
            E
Sbjct: 888 KE 889



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 97/401 (24%), Positives = 164/401 (40%), Gaps = 51/401 (12%)

Query: 84  AVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFS 143
           A+K F W     +  ++     ++  L     +  AM    K +K   + ++ T+ ++ +
Sbjct: 434 ALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLIN 493

Query: 144 SYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDA-WQFLRVVDGRIKP 202
            Y+    V +A    D+M++ GC+ D +  N L+S   + GK   A + F  +V+  + P
Sbjct: 494 GYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNP 553

Query: 203 DNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG-------- 254
           +  +Y  L++G  K+  V  A     E + E+G +P NV +Y++ +  L K         
Sbjct: 554 NPVSYTTLIDGHSKDGKVDIALSLL-ERMEEMGCNP-NVESYNAVINGLSKENRFSEAEK 611

Query: 255 -CDGIYET------------VNSLKR-------------MMERGCNPGM-TFFKLAFEEC 287
            CD + E             ++ L R             M +R C P + T+  L +  C
Sbjct: 612 ICDKMAEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLC 671

Query: 288 LTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPD 347
             G+    AE +   M  R G  PD   +  +I  +        A  LL  MV  G  P+
Sbjct: 672 QEGKA-DEAEILLKEM-ERKGLAPDEVTFTSLIDGFVVLGRIDHAFLLLRRMVDVGCKPN 729

Query: 348 IQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWK 407
            +TY++L + L K   L E        V++E V +       V   + S+          
Sbjct: 730 YRTYSVLLKGLQKECLLLEE----KVAVQHEAVYSFSPHEKDVNFEIVSN-------LLA 778

Query: 408 YMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448
            M E  C    +T + LV+GLC      EA +  K M E+G
Sbjct: 779 RMSEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKERG 819



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 60/262 (22%), Positives = 115/262 (43%), Gaps = 11/262 (4%)

Query: 125 KSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDG 184
           K +K+  V +  T+ ++ +   V  R   A+  F  ME +G   +    N ++  +C  G
Sbjct: 405 KMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGG 464

Query: 185 KTIDAW-QFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPA 243
               A   F +++     P   TY  L+ G+  + +V NA +   +++ E G +PD    
Sbjct: 465 DIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLL-DLMKENGCEPDEW-T 522

Query: 244 YDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAM 303
           Y+  L++       +       + M+E G NP      +++   + G +  G   I  ++
Sbjct: 523 YNE-LVSGFSKWGKLESASFYFQEMVECGLNPN----PVSYTTLIDGHSKDGKVDIALSL 577

Query: 304 VGRI---GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVK 360
           + R+   G  P+   YN +I+     N    A K+ D+M   G  P++ TY  L + L +
Sbjct: 578 LERMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMAEQGLLPNVITYTTLIDGLCR 637

Query: 361 GRKLWEASGLFNEMVKNENVLN 382
             +   A  +F++M K + + N
Sbjct: 638 NGRTQFAFKIFHDMEKRKCLPN 659



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 79/355 (22%), Positives = 144/355 (40%), Gaps = 16/355 (4%)

Query: 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDV 160
           Y + L +  L      +   + +  MKK     ++ T+ ++ S      +++ AI  +  
Sbjct: 346 YTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHK 405

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDN-DTYAILLEGWEKERD 219
           M + G   +    N+L++ +C  G+   A +    ++G     N  TY  +++G     D
Sbjct: 406 MLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGD 465

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLIT-LLKGCDGIYETVNSLKRMMERGCNPGMT 278
           +  A   F +M +++G  P  V  Y++ +   L KG   +      L  M E GC P   
Sbjct: 466 IEKAMVLFEKM-LKMGPLP-TVVTYNTLINGYLTKG--NVNNAARLLDLMKENGCEPD-- 519

Query: 279 FFKLAFEECLTG----QNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMK 334
             +  + E ++G      L  A F +  MV   G  P+   Y  +I  +    +   A+ 
Sbjct: 520 --EWTYNELVSGFSKWGKLESASFYFQEMV-ECGLNPNPVSYTTLIDGHSKDGKVDIALS 576

Query: 335 LLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYM 394
           LL+ M   G  P++++YN +   L K  +  EA  + ++M +   + N       +    
Sbjct: 577 LLERMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMAEQGLLPNVITYTTLIDGLC 636

Query: 395 DSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
            +     A K +  M +  C     T + L+ GLC      EA    K M  KG+
Sbjct: 637 RNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGL 691


>gi|291622148|emb|CBJ23784.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 630

 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 80/334 (23%), Positives = 151/334 (45%), Gaps = 5/334 (1%)

Query: 136 ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-R 194
            TF ++     + ++  +A+   D M   GC+ D+     +++ +C+ G T  A+  L +
Sbjct: 187 VTFNTLIHGLFLHNKASEAVALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFILLNK 246

Query: 195 VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG 254
           +  G+++P    Y  +++G  K + + +A   F EM  + G  P NV  Y S LI+ L  
Sbjct: 247 MEQGKLEPGVLIYTTIIDGLCKNKHMDDALNLFKEMETK-GIRP-NVVTYSS-LISCLCN 303

Query: 255 CDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTH 314
                +    L  M+ER  NP +  F    +  +    L  AE ++  MV R    P   
Sbjct: 304 YGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKR-SIDPSIV 362

Query: 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
            Y+ +I+ +C  +    A ++ + MV    FPD+ +Y+ L +   K +++ E   LF EM
Sbjct: 363 TYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVSYSTLIKGFCKAKRVDEGMELFREM 422

Query: 375 VKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHML 434
            +   V N       ++    + D  +A + +K M+ +       T N L+ GLC    L
Sbjct: 423 SQRGLVGNTVTYTTLIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKL 482

Query: 435 PEAVKYAKGMAEKGIQVTPFALSKLKQILIKARK 468
            +A+   + +    ++ T +  + + + + KA K
Sbjct: 483 EKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGK 516



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 91/444 (20%), Positives = 182/444 (40%), Gaps = 45/444 (10%)

Query: 73  VLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENV 132
           V++ + +   P+  FF   A+     +  Y   L  + L +  L DA+    + +K    
Sbjct: 20  VVRGNVATVSPSFSFFWRRAFSGKTSYD-YREKLSRNGLSELKLDDAVALFGEMVKSRPF 78

Query: 133 LSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQF 192
            S+  F+ + S+    ++    I+  + M+  G  H+ +  + L++  CR  +   A   
Sbjct: 79  PSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGMPHNHYTYSILINCFCRRSQLPLALAV 138

Query: 193 L-RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITL 251
           L +++    +P+  T + LL G+   + ++ A     +M +  G+ P+ V        TL
Sbjct: 139 LGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFV-TGYQPNTVT-----FNTL 192

Query: 252 LKGC---DGIYETVNSLKRMMERGCNPGMTFFKLAFEE-CLTGQN--------------L 293
           + G    +   E V  + RM+ +GC P +  + +     C  G                L
Sbjct: 193 IHGLFLHNKASEAVALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFILLNKMEQGKL 252

Query: 294 RGAEFIWGAMVGRI-------------------GFRPDTHMYNMMISLYCYSNETGAAMK 334
                I+  ++  +                   G RP+   Y+ +IS  C       A +
Sbjct: 253 EPGVLIYTTIIDGLCKNKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASR 312

Query: 335 LLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYM 394
           LL +M+     PD+ T++ L +  VK  KL EA  L++EMVK     +     + +  + 
Sbjct: 313 LLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFC 372

Query: 395 DSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPF 454
             D    A + +++M+  HC     + + L+ G C    + E ++  + M+++G+     
Sbjct: 373 MHDRLDEAKQMFEFMVSKHCFPDVVSYSTLIKGFCKAKRVDEGMELFREMSQRGLVGNTV 432

Query: 455 ALSKLKQILIKARKEAVYEELLKK 478
             + L Q L +A    + +E+ K+
Sbjct: 433 TYTTLIQGLFQAGDCDMAQEIFKE 456



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 60/244 (24%), Positives = 108/244 (44%), Gaps = 9/244 (3%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           S+ T++S+ + + + DR+ +A   F+ M    C  DV + ++L+   C+  +  +  +  
Sbjct: 360 SIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVSYSTLIKGFCKAKRVDEGMELF 419

Query: 194 RVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
           R +  R +  +  TY  L++G  +  D   A++ F EMV +    P N+  Y++ L  L 
Sbjct: 420 REMSQRGLVGNTVTYTTLIQGLFQAGDCDMAQEIFKEMVSD--GVPPNIMTYNTLLDGLC 477

Query: 253 KGCDGIYETVNSLKRMMERG-CNPGMTFFKLAFEE-CLTGQNLRGAEFIWGAMVGRIGFR 310
           K  +G  E    +   ++R    P +  + +  E  C  G+   G +      +   G +
Sbjct: 478 K--NGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLK--GVK 533

Query: 311 PDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGL 370
           PD   YN MIS +C       A  L  EM  +G  P+   YN L    ++      ++ L
Sbjct: 534 PDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAEL 593

Query: 371 FNEM 374
             EM
Sbjct: 594 IKEM 597



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 68/273 (24%), Positives = 121/273 (44%), Gaps = 12/273 (4%)

Query: 104 WNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVME 162
           +  ++D L KN   D   +  K M+ + +  ++ T++S+ S      R  DA      M 
Sbjct: 259 YTTIIDGLCKNKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMI 318

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERDVA 221
           +     DVF  ++L+ A  ++GK ++A +    +V   I P   TY+ L+ G+     + 
Sbjct: 319 ERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLD 378

Query: 222 NAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG-CDG--IYETVNSLKRMMERGCNPGMT 278
            AK+ F E ++     PD V +Y     TL+KG C    + E +   + M +RG      
Sbjct: 379 EAKQMF-EFMVSKHCFPD-VVSYS----TLIKGFCKAKRVDEGMELFREMSQRGLVGNTV 432

Query: 279 FFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDE 338
            +    +      +   A+ I+  MV   G  P+   YN ++   C + +   AM + + 
Sbjct: 433 TYTTLIQGLFQAGDCDMAQEIFKEMVSD-GVPPNIMTYNTLLDGLCKNGKLEKAMVVFEY 491

Query: 339 MVYNGAFPDIQTYNILFEFLVKGRKLWEASGLF 371
           +  +   P I TYNI+ E + K  K+ +   LF
Sbjct: 492 LQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLF 524


>gi|356561401|ref|XP_003548970.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 447

 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 96/424 (22%), Positives = 176/424 (41%), Gaps = 72/424 (16%)

Query: 48  NTPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAW--- 104
           ++  P++E+V+D T+ + ++  + +       H  P ++F +   Y +  KH P A    
Sbjct: 36  HSQPPSIENVVDDTVSQFNRLLLVR-------HTPPIIEFGKILGYLVKMKHYPTAISLS 88

Query: 105 ----------NLVVDLLGKNCL---------FDAMWDAIKSMKKENVLSLATFASVFSSY 145
                     NLV   +  NC          F  +   +K   + + ++L T   +    
Sbjct: 89  RQMEVKGIEPNLVTLNILINCFCHLGQMAFSFSVLGKILKLGYQPDTITLNT---LMKGL 145

Query: 146 VVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDN 204
            +   VK ++   D +   G + +  +  +LL+ +C+ G+T  A + LR+++ R  +PD 
Sbjct: 146 CLKGEVKRSLHFHDKVVAQGFQMNQVSYGTLLNGLCKIGETRCAVKLLRMIEDRSTRPDV 205

Query: 205 DTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNS 264
             Y+ +++G  K++ V  A   F EM                          GI+  V  
Sbjct: 206 VMYSTIIDGLCKDKIVNQAYDFFSEM-----------------------NARGIFPNV-- 240

Query: 265 LKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYC 324
                       +T+  L +  CL GQ L GA  +   M+ +    P+ + YN++I   C
Sbjct: 241 ------------ITYSTLIWGFCLAGQ-LMGAFSLLNEMILK-NINPNVYTYNILIDALC 286

Query: 325 YSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHE 384
              +   A KLL EM + G   D+ TYN + + L K + L +A+ LF +M K     N  
Sbjct: 287 KEGKVKEAKKLLAEMHHKGQPADVVTYNSVLDGLCKSQNLDKATALFMKMKKWGIQPNKY 346

Query: 385 NCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGM 444
              A +           A K +++++   C     T N++++GLC   M  +A+     M
Sbjct: 347 TYTALIDGLCKGGRLKNAQKLFQHLLVKGCCIDVRTYNVMISGLCKEGMFDKALAMKSKM 406

Query: 445 AEKG 448
            + G
Sbjct: 407 EDNG 410



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 84/349 (24%), Positives = 142/349 (40%), Gaps = 50/349 (14%)

Query: 138 FASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVV 196
           F  +    V       AI+    ME  G + ++  LN L++  C  G+   ++  L +++
Sbjct: 68  FGKILGYLVKMKHYPTAISLSRQMEVKGIEPNLVTLNILINCFCHLGQMAFSFSVLGKIL 127

Query: 197 DGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD 256
               +PD  T   L++G   + +V  +   F + V+  G+  + V +Y     TLL G  
Sbjct: 128 KLGYQPDTITLNTLMKGLCLKGEVKRSLH-FHDKVVAQGFQMNQV-SYG----TLLNGLC 181

Query: 257 GIYETVNSLK--RMME-RGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDT 313
            I ET  ++K  RM+E R   P +  +    +     + +  A   +  M  R G  P+ 
Sbjct: 182 KIGETRCAVKLLRMIEDRSTRPDVVMYSTIIDGLCKDKIVNQAYDFFSEMNAR-GIFPNV 240

Query: 314 HMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNE 373
             Y+ +I  +C + +   A  LL+EM+     P++ TYNIL + L K  K+ EA  L  E
Sbjct: 241 ITYSTLIWGFCLAGQLMGAFSLLNEMILKNINPNVYTYNILIDALCKEGKVKEAKKLLAE 300

Query: 374 MVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHM 433
           M       +H+   A V  Y                            N ++ GLC    
Sbjct: 301 M-------HHKGQPADVVTY----------------------------NSVLDGLCKSQN 325

Query: 434 LPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARK----EAVYEELLKK 478
           L +A      M + GIQ   +  + L   L K  +    + +++ LL K
Sbjct: 326 LDKATALFMKMKKWGIQPNKYTYTALIDGLCKGGRLKNAQKLFQHLLVK 374


>gi|242041853|ref|XP_002468321.1| hypothetical protein SORBIDRAFT_01g043770 [Sorghum bicolor]
 gi|241922175|gb|EER95319.1| hypothetical protein SORBIDRAFT_01g043770 [Sorghum bicolor]
          Length = 794

 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 100/402 (24%), Positives = 162/402 (40%), Gaps = 55/402 (13%)

Query: 110 LLGKNCLFDAMWDA---IKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVMEQYG 165
           LL  +C    + +A   +  MKKE +  + AT+ ++ S+Y     +K A    + M  +G
Sbjct: 251 LLKAHCRKGMLGEARTLLARMKKEGIAPTRATYNTLVSAYARLGWIKQATNVVEAMTAFG 310

Query: 166 CKHDVFALNSLLSAICRDGKTIDAWQFLRVVD--GRIKPDNDTYAILLEGWEKERDVANA 223
            + D++  N L + +C+ GK  +A++    ++    + PD  TY  L++   K +  ++A
Sbjct: 311 FEPDLWTYNVLAAGLCQAGKVDEAFKLKDEMEHLSIVSPDVVTYNTLVDACFKYQRSSDA 370

Query: 224 KKTFGEMVIEVGWDPDNVPAYDSYLIT---LLKGC---DGIYETVNSLKRMMERGCNPGM 277
                EM  +            S L+T   ++KG      + E +  LK M E G  P +
Sbjct: 371 LNLLEEMRDK---------GVKSSLVTHNIVVKGLCREGQLEEALGRLKMMTEEGLAPDV 421

Query: 278 TFFKLAFEECLTGQNLRGAEFIWGAMV--------------------------------- 304
             +    +     +N+  A  +   MV                                 
Sbjct: 422 ITYNTLIDAYCKARNVAKAFVLMDEMVRSGLKMDTFTLNTLLYNLCKEKRYEEAEELLRS 481

Query: 305 -GRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRK 363
             + GF PD   Y  +++ Y   N+   A+ L DEM      P I TYN L + L    K
Sbjct: 482 PPQRGFVPDEVSYGTVMAAYFKENKPEPALYLWDEMSKRKLTPSIYTYNTLIKGLCTIGK 541

Query: 364 LWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNL 423
           L EA    NE++K   V +       +  Y    D   A +F   M+EN+      T N 
Sbjct: 542 LTEAIDKLNELMKKGLVPDDTTYNIIIHAYCKEGDLEKAFQFHNKMLENYFKPDVVTCNT 601

Query: 424 LVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIK 465
           L+ GLC    L +A+K  +  AEKG +V     + L Q L K
Sbjct: 602 LMNGLCLHGKLEKAIKLFESWAEKGKKVDVITYNTLIQALCK 643



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 86/351 (24%), Positives = 138/351 (39%), Gaps = 43/351 (12%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RV 195
           TF  +  ++     + DA++T   M+ +G   DV   N+LL A CR G   +A   L R+
Sbjct: 212 TFNLLVHTHCSKGTLADALSTLSTMQGFGLSPDVVTYNTLLKAHCRKGMLGEARTLLARM 271

Query: 196 VDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPD----NVPAY------- 244
               I P   TY  L+  + +   +  A     E +   G++PD    NV A        
Sbjct: 272 KKEGIAPTRATYNTLVSAYARLGWIKQATNVV-EAMTAFGFEPDLWTYNVLAAGLCQAGK 330

Query: 245 --DSYLI------------------TLLKGC---DGIYETVNSLKRMMERGCNPGMTFFK 281
             +++ +                  TL+  C       + +N L+ M ++G    +    
Sbjct: 331 VDEAFKLKDEMEHLSIVSPDVVTYNTLVDACFKYQRSSDALNLLEEMRDKGVKSSLVTHN 390

Query: 282 LAFEE-CLTGQNLRGAEFIWG--AMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDE 338
           +  +  C  GQ     E   G   M+   G  PD   YN +I  YC +     A  L+DE
Sbjct: 391 IVVKGLCREGQ----LEEALGRLKMMTEEGLAPDVITYNTLIDAYCKARNVAKAFVLMDE 446

Query: 339 MVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDD 398
           MV +G   D  T N L   L K ++  EA  L     +   V +  +    +  Y   + 
Sbjct: 447 MVRSGLKMDTFTLNTLLYNLCKEKRYEEAEELLRSPPQRGFVPDEVSYGTVMAAYFKENK 506

Query: 399 PYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
           P  A+  W  M +   +    T N L+ GLC +  L EA+     + +KG+
Sbjct: 507 PEPALYLWDEMSKRKLTPSIYTYNTLIKGLCTIGKLTEAIDKLNELMKKGL 557



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 87/381 (22%), Positives = 155/381 (40%), Gaps = 9/381 (2%)

Query: 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLS--LATFASVFSSYVVADRVKDAITTFD 159
           + +N++   L +    D  +     M+  +++S  + T+ ++  +     R  DA+   +
Sbjct: 316 WTYNVLAAGLCQAGKVDEAFKLKDEMEHLSIVSPDVVTYNTLVDACFKYQRSSDALNLLE 375

Query: 160 VMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV-DGRIKPDNDTYAILLEGWEKER 218
            M   G K  +   N ++  +CR+G+  +A   L+++ +  + PD  TY  L++ + K R
Sbjct: 376 EMRDKGVKSSLVTHNIVVKGLCREGQLEEALGRLKMMTEEGLAPDVITYNTLIDAYCKAR 435

Query: 219 DVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMM-ERGCNPGM 277
           +VA A     EMV   G   D     ++ L  L K  +  YE    L R   +RG  P  
Sbjct: 436 NVAKAFVLMDEMV-RSGLKMDTF-TLNTLLYNLCK--EKRYEEAEELLRSPPQRGFVPDE 491

Query: 278 TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLD 337
             +               A ++W  M  R    P  + YN +I   C   +   A+  L+
Sbjct: 492 VSYGTVMAAYFKENKPEPALYLWDEMSKR-KLTPSIYTYNTLIKGLCTIGKLTEAIDKLN 550

Query: 338 EMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSD 397
           E++  G  PD  TYNI+     K   L +A    N+M++N    +   C   +       
Sbjct: 551 ELMKKGLVPDDTTYNIIIHAYCKEGDLEKAFQFHNKMLENYFKPDVVTCNTLMNGLCLHG 610

Query: 398 DPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALS 457
               AIK ++   E        T N L+  LC    +  A+ +   M  +G+Q   F  +
Sbjct: 611 KLEKAIKLFESWAEKGKKVDVITYNTLIQALCKDGDVDTALHFFADMEARGLQPDAFTYN 670

Query: 458 KLKQILIKARKEAVYEELLKK 478
            +   L +A +    + +L K
Sbjct: 671 VVLSALSEAGRSEEAQNMLHK 691



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 93/417 (22%), Positives = 160/417 (38%), Gaps = 50/417 (11%)

Query: 98  KHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAIT 156
           K S    N+VV  L +    +     +K M +E +   + T+ ++  +Y  A  V  A  
Sbjct: 383 KSSLVTHNIVVKGLCREGQLEEALGRLKMMTEEGLAPDVITYNTLIDAYCKARNVAKAFV 442

Query: 157 TFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWE 215
             D M + G K D F LN+LL  +C++ +  +A + LR    R   PD  +Y  ++  + 
Sbjct: 443 LMDEMVRSGLKMDTFTLNTLLYNLCKEKRYEEAEELLRSPPQRGFVPDEVSYGTVMAAYF 502

Query: 216 KERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG---CDGIYETVNSLKRMMERG 272
           KE     A   + EM           P+  +Y  TL+KG      + E ++ L  +M++G
Sbjct: 503 KENKPEPALYLWDEMSKR-----KLTPSIYTY-NTLIKGLCTIGKLTEAIDKLNELMKKG 556

Query: 273 CNPGMTFFKL-------------AFE------------ECLTGQNLRGAEFIWGAMVGRI 307
             P  T + +             AF+            + +T   L     + G +   I
Sbjct: 557 LVPDDTTYNIIIHAYCKEGDLEKAFQFHNKMLENYFKPDVVTCNTLMNGLCLHGKLEKAI 616

Query: 308 ---------GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFL 358
                    G + D   YN +I   C   +   A+    +M   G  PD  TYN++   L
Sbjct: 617 KLFESWAEKGKKVDVITYNTLIQALCKDGDVDTALHFFADMEARGLQPDAFTYNVVLSAL 676

Query: 359 VKGRKLWEASGLFNEMVKNENV---LNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCS 415
            +  +  EA  + +++ ++  +    ++   +++        DP V          N   
Sbjct: 677 SEAGRSEEAQNMLHKLDESGKLSERFSYPLIKSSAEEVKTGKDPEVKSDCESG--GNAKG 734

Query: 416 DLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVY 472
              E+ N  V  LC    L EA      M +KG+ V       L + LIK +K   +
Sbjct: 735 GDQESYNKSVKELCVGGQLKEAKAVLDEMMQKGMSVDSSTYITLMEGLIKRQKRQTH 791



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 75/306 (24%), Positives = 118/306 (38%), Gaps = 49/306 (16%)

Query: 172 ALNSLLSAICRDGKTIDAWQ---FLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFG 228
           A N++LSA+ R   T        F  ++  R+ P++ T+ +L+     +  +A+A  T  
Sbjct: 175 AANAVLSALARSPSTSPQASLDVFRSLIALRLHPNHYTFNLLVHTHCSKGTLADALSTLS 234

Query: 229 EMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECL 288
            M    G  PD V                   T N+L   ++  C  GM           
Sbjct: 235 TMQ-GFGLSPDVV-------------------TYNTL---LKAHCRKGML---------- 261

Query: 289 TGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDI 348
                 G      A + + G  P    YN ++S Y        A  +++ M   G  PD+
Sbjct: 262 ------GEARTLLARMKKEGIAPTRATYNTLVSAYARLGWIKQATNVVEAMTAFGFEPDL 315

Query: 349 QTYNILFEFLVKGRKLWEASGLFNEM----VKNENVLNHENCRAAVRVYMDSDDPYVAIK 404
            TYN+L   L +  K+ EA  L +EM    + + +V+ +     A   Y  S D   A+ 
Sbjct: 316 WTYNVLAAGLCQAGKVDEAFKLKDEMEHLSIVSPDVVTYNTLVDACFKYQRSSD---ALN 372

Query: 405 FWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILI 464
             + M +        T N++V GLC    L EA+   K M E+G+       + L     
Sbjct: 373 LLEEMRDKGVKSSLVTHNIVVKGLCREGQLEEALGRLKMMTEEGLAPDVITYNTLIDAYC 432

Query: 465 KARKEA 470
           KAR  A
Sbjct: 433 KARNVA 438



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 75/300 (25%), Positives = 117/300 (39%), Gaps = 26/300 (8%)

Query: 76  FSYSHPGPAVKFFRWSAYQLNDKHSP--YAWNLVVDLLGKNCLFDAMWDAIKS----MKK 129
           F  + P PA+  + W       K +P  Y +N ++  L   C    + +AI      MKK
Sbjct: 502 FKENKPEPAL--YLWDEMS-KRKLTPSIYTYNTLIKGL---CTIGKLTEAIDKLNELMKK 555

Query: 130 ENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDA 189
             V    T+  +  +Y     ++ A    + M +   K DV   N+L++ +C  GK   A
Sbjct: 556 GLVPDDTTYNIIIHAYCKEGDLEKAFQFHNKMLENYFKPDVVTCNTLMNGLCLHGKLEKA 615

Query: 190 WQFLRV-VDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYL 248
            +      +   K D  TY  L++   K+ DV  A   F +M    G  PD    Y+  L
Sbjct: 616 IKLFESWAEKGKKVDVITYNTLIQALCKDGDVDTALHFFADMEAR-GLQPDAF-TYNVVL 673

Query: 249 ITLLKG-----CDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAM 303
             L +         +   ++   ++ ER   P     K + EE  TG++    E      
Sbjct: 674 SALSEAGRSEEAQNMLHKLDESGKLSERFSYP---LIKSSAEEVKTGKD---PEVKSDCE 727

Query: 304 VGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRK 363
            G      D   YN  +   C   +   A  +LDEM+  G   D  TY  L E L+K +K
Sbjct: 728 SGGNAKGGDQESYNKSVKELCVGGQLKEAKAVLDEMMQKGMSVDSSTYITLMEGLIKRQK 787


>gi|15221549|ref|NP_176454.1| RNA processing factor 2 [Arabidopsis thaliana]
 gi|193806496|sp|Q9SXD1.2|PPR91_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62670, mitochondrial; Flags: Precursor
 gi|332195871|gb|AEE33992.1| RNA processing factor 2 [Arabidopsis thaliana]
          Length = 630

 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 81/334 (24%), Positives = 151/334 (45%), Gaps = 5/334 (1%)

Query: 136 ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-R 194
            TF ++     + ++  +A+   D M   GC+ D+     +++ +C+ G T  A+  L +
Sbjct: 187 VTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNK 246

Query: 195 VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG 254
           +  G+++P    Y  +++G  K + + +A   F EM  + G  P NV  Y S LI+ L  
Sbjct: 247 MEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETK-GIRP-NVVTYSS-LISCLCN 303

Query: 255 CDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTH 314
                +    L  M+ER  NP +  F    +  +    L  AE ++  MV R    P   
Sbjct: 304 YGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKR-SIDPSIV 362

Query: 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
            Y+ +I+ +C  +    A ++ + MV    FPD+ TYN L +   K +++ E   +F EM
Sbjct: 363 TYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREM 422

Query: 375 VKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHML 434
            +   V N       ++    + D  +A + +K M+ +       T N L+ GLC    L
Sbjct: 423 SQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKL 482

Query: 435 PEAVKYAKGMAEKGIQVTPFALSKLKQILIKARK 468
            +A+   + +    ++ T +  + + + + KA K
Sbjct: 483 EKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGK 516



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 79/382 (20%), Positives = 156/382 (40%), Gaps = 41/382 (10%)

Query: 99  HSPYAWNLVVDLLGKNCLFDAMWDAI-KSMKKENVLSLATFASVFSSYVVADRVKDAITT 157
           H+ Y ++++++   +          + K MK     ++ T +S+ + Y  + R+ +A+  
Sbjct: 114 HNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVAL 173

Query: 158 FDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEK 216
            D M   G + +    N+L+  +    K  +A   + R+V    +PD  TY +++ G  K
Sbjct: 174 VDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCK 233

Query: 217 ERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPG 276
             D   A                                       N L +M +    PG
Sbjct: 234 RGDTDLA--------------------------------------FNLLNKMEQGKLEPG 255

Query: 277 MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLL 336
           +  +    +     +++  A  ++  M  + G RP+   Y+ +IS  C       A +LL
Sbjct: 256 VLIYNTIIDGLCKYKHMDDALNLFKEMETK-GIRPNVVTYSSLISCLCNYGRWSDASRLL 314

Query: 337 DEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDS 396
            +M+     PD+ T++ L +  VK  KL EA  L++EMVK     +     + +  +   
Sbjct: 315 SDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMH 374

Query: 397 DDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFAL 456
           D    A + +++M+  HC     T N L+ G C    + E ++  + M+++G+       
Sbjct: 375 DRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTY 434

Query: 457 SKLKQILIKARKEAVYEELLKK 478
           + L Q L +A    + +E+ K+
Sbjct: 435 NILIQGLFQAGDCDMAQEIFKE 456



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/244 (25%), Positives = 108/244 (44%), Gaps = 9/244 (3%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           S+ T++S+ + + + DR+ +A   F+ M    C  DV   N+L+   C+  +  +  +  
Sbjct: 360 SIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVF 419

Query: 194 RVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
           R +  R +  +  TY IL++G  +  D   A++ F EMV +    P N+  Y++ L  L 
Sbjct: 420 REMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSD--GVPPNIMTYNTLLDGLC 477

Query: 253 KGCDGIYETVNSLKRMMERG-CNPGMTFFKLAFEE-CLTGQNLRGAEFIWGAMVGRIGFR 310
           K  +G  E    +   ++R    P +  + +  E  C  G+   G +      +   G +
Sbjct: 478 K--NGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLK--GVK 533

Query: 311 PDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGL 370
           PD   YN MIS +C       A  L  EM  +G  P+   YN L    ++      ++ L
Sbjct: 534 PDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAEL 593

Query: 371 FNEM 374
             EM
Sbjct: 594 IKEM 597



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 68/273 (24%), Positives = 122/273 (44%), Gaps = 12/273 (4%)

Query: 104 WNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVME 162
           +N ++D L K    D   +  K M+ + +  ++ T++S+ S      R  DA      M 
Sbjct: 259 YNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMI 318

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERDVA 221
           +     DVF  ++L+ A  ++GK ++A +    +V   I P   TY+ L+ G+     + 
Sbjct: 319 ERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLD 378

Query: 222 NAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG-C--DGIYETVNSLKRMMERGCNPGMT 278
            AK+ F E ++     PD V  Y+    TL+KG C    + E +   + M +RG      
Sbjct: 379 EAKQMF-EFMVSKHCFPD-VVTYN----TLIKGFCKYKRVEEGMEVFREMSQRGLVGNTV 432

Query: 279 FFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDE 338
            + +  +      +   A+ I+  MV   G  P+   YN ++   C + +   AM + + 
Sbjct: 433 TYNILIQGLFQAGDCDMAQEIFKEMVSD-GVPPNIMTYNTLLDGLCKNGKLEKAMVVFEY 491

Query: 339 MVYNGAFPDIQTYNILFEFLVKGRKLWEASGLF 371
           +  +   P I TYNI+ E + K  K+ +   LF
Sbjct: 492 LQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLF 524


>gi|6630464|gb|AAF19552.1|AC007190_20 F23N19.4 [Arabidopsis thaliana]
          Length = 1244

 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 81/334 (24%), Positives = 151/334 (45%), Gaps = 5/334 (1%)

Query: 136  ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-R 194
             TF ++     + ++  +A+   D M   GC+ D+     +++ +C+ G T  A+  L +
Sbjct: 801  VTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNK 860

Query: 195  VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG 254
            +  G+++P    Y  +++G  K + + +A   F EM  + G  P NV  Y S LI+ L  
Sbjct: 861  MEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETK-GIRP-NVVTYSS-LISCLCN 917

Query: 255  CDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTH 314
                 +    L  M+ER  NP +  F    +  +    L  AE ++  MV R    P   
Sbjct: 918  YGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKR-SIDPSIV 976

Query: 315  MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
             Y+ +I+ +C  +    A ++ + MV    FPD+ TYN L +   K +++ E   +F EM
Sbjct: 977  TYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREM 1036

Query: 375  VKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHML 434
             +   V N       ++    + D  +A + +K M+ +       T N L+ GLC    L
Sbjct: 1037 SQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKL 1096

Query: 435  PEAVKYAKGMAEKGIQVTPFALSKLKQILIKARK 468
             +A+   + +    ++ T +  + + + + KA K
Sbjct: 1097 EKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGK 1130



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 74/313 (23%), Positives = 134/313 (42%), Gaps = 40/313 (12%)

Query: 136 ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRV 195
            T  S+ + +   +RV DA++  D M + G K D+ A N+++ ++C+  +  DA+ F + 
Sbjct: 259 VTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKE 318

Query: 196 VDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG 254
           ++ + I+P+  TY  L+ G       ++A +   +M I+    P NV  Y + L   +K 
Sbjct: 319 IERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDM-IKKKITP-NVITYSALLDAFVK- 375

Query: 255 CDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTH 314
                                              G+ L   E ++  MV R+   PD  
Sbjct: 376 ----------------------------------NGKVLEAKE-LFEEMV-RMSIDPDIV 399

Query: 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
            Y+ +I+  C  +    A ++ D MV  G   D+ +YN L     K +++ +   LF EM
Sbjct: 400 TYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREM 459

Query: 375 VKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHML 434
            +   V N       ++ +  + D   A +F+  M     S    T N+L+ GLCD   L
Sbjct: 460 SQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGEL 519

Query: 435 PEAVKYAKGMAEK 447
            +A+   + M ++
Sbjct: 520 EKALVIFEDMQKR 532



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 82/327 (25%), Positives = 136/327 (41%), Gaps = 11/327 (3%)

Query: 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR 194
           +  + ++  S     RV DA   F  +E+ G + +V    +L++ +C   +  DA + L 
Sbjct: 293 IVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLS 352

Query: 195 -VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLK 253
            ++  +I P+  TY+ LL+ + K   V  AK+ F EMV  +  DPD +  Y S LI  L 
Sbjct: 353 DMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMV-RMSIDPD-IVTYSS-LINGLC 409

Query: 254 GCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDT 313
             D I E       M+ +GC   +  +          + +     ++  M  R G   +T
Sbjct: 410 LHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQR-GLVSNT 468

Query: 314 HMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNE 373
             YN +I  +  + +   A +   +M + G  PDI TYNIL   L    +L +A  +F +
Sbjct: 469 VTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFED 528

Query: 374 MVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSE---TGNLLVAGLCD 430
           M K E  L+       +R    +     A   W          L     T   +++GLC 
Sbjct: 529 MQKREMDLDIVTYTTVIRGMCKTGKVEEA---WSLFCSLSLKGLKPDIVTYTTMMSGLCT 585

Query: 431 MHMLPEAVKYAKGMAEKGIQVTPFALS 457
             +L E       M ++G+      LS
Sbjct: 586 KGLLHEVEALYTKMKQEGLMKNDCTLS 612



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 79/382 (20%), Positives = 156/382 (40%), Gaps = 41/382 (10%)

Query: 99   HSPYAWNLVVDLLGKNCLFDAMWDAI-KSMKKENVLSLATFASVFSSYVVADRVKDAITT 157
            H+ Y ++++++   +          + K MK     ++ T +S+ + Y  + R+ +A+  
Sbjct: 728  HNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVAL 787

Query: 158  FDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEK 216
             D M   G + +    N+L+  +    K  +A   + R+V    +PD  TY +++ G  K
Sbjct: 788  VDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCK 847

Query: 217  ERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPG 276
              D   A                                       N L +M +    PG
Sbjct: 848  RGDTDLA--------------------------------------FNLLNKMEQGKLEPG 869

Query: 277  MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLL 336
            +  +    +     +++  A  ++  M  + G RP+   Y+ +IS  C       A +LL
Sbjct: 870  VLIYNTIIDGLCKYKHMDDALNLFKEMETK-GIRPNVVTYSSLISCLCNYGRWSDASRLL 928

Query: 337  DEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDS 396
             +M+     PD+ T++ L +  VK  KL EA  L++EMVK     +     + +  +   
Sbjct: 929  SDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMH 988

Query: 397  DDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFAL 456
            D    A + +++M+  HC     T N L+ G C    + E ++  + M+++G+       
Sbjct: 989  DRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTY 1048

Query: 457  SKLKQILIKARKEAVYEELLKK 478
            + L Q L +A    + +E+ K+
Sbjct: 1049 NILIQGLFQAGDCDMAQEIFKE 1070



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 75/337 (22%), Positives = 146/337 (43%), Gaps = 46/337 (13%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           S+  F  + S+ V   +    I+    ME  G ++D++  N +++  C   +   A   L
Sbjct: 187 SIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSIL 246

Query: 194 -RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
            +++    +PD  T   L+ G+ +   V++A     +MV E+G+ PD + AY++ + +L 
Sbjct: 247 GKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMV-EIGYKPD-IVAYNAIIDSLC 304

Query: 253 KGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD 312
           K            KR+     N    FFK                      + R G RP+
Sbjct: 305 K-----------TKRV-----NDAFDFFK---------------------EIERKGIRPN 327

Query: 313 THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFN 372
              Y  +++  C S+    A +LL +M+     P++ TY+ L +  VK  K+ EA  LF 
Sbjct: 328 VVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFE 387

Query: 373 EMVK---NENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLC 429
           EMV+   + +++ + +    + ++   D+   A + +  M+   C     + N L+ G C
Sbjct: 388 EMVRMSIDPDIVTYSSLINGLCLHDRIDE---ANQMFDLMVSKGCLADVVSYNTLINGFC 444

Query: 430 DMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKA 466
               + + +K  + M+++G+       + L Q   +A
Sbjct: 445 KAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQA 481



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/244 (25%), Positives = 108/244 (44%), Gaps = 9/244 (3%)

Query: 134  SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
            S+ T++S+ + + + DR+ +A   F+ M    C  DV   N+L+   C+  +  +  +  
Sbjct: 974  SIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVF 1033

Query: 194  RVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
            R +  R +  +  TY IL++G  +  D   A++ F EMV +    P N+  Y++ L  L 
Sbjct: 1034 REMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSD--GVPPNIMTYNTLLDGLC 1091

Query: 253  KGCDGIYETVNSLKRMMERG-CNPGMTFFKLAFEE-CLTGQNLRGAEFIWGAMVGRIGFR 310
            K  +G  E    +   ++R    P +  + +  E  C  G+   G +      +   G +
Sbjct: 1092 K--NGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLK--GVK 1147

Query: 311  PDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGL 370
            PD   YN MIS +C       A  L  EM  +G  P+   YN L    ++      ++ L
Sbjct: 1148 PDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAEL 1207

Query: 371  FNEM 374
              EM
Sbjct: 1208 IKEM 1211



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 68/273 (24%), Positives = 122/273 (44%), Gaps = 12/273 (4%)

Query: 104  WNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVME 162
            +N ++D L K    D   +  K M+ + +  ++ T++S+ S      R  DA      M 
Sbjct: 873  YNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMI 932

Query: 163  QYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERDVA 221
            +     DVF  ++L+ A  ++GK ++A +    +V   I P   TY+ L+ G+     + 
Sbjct: 933  ERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLD 992

Query: 222  NAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG-C--DGIYETVNSLKRMMERGCNPGMT 278
             AK+ F E ++     PD V  Y+    TL+KG C    + E +   + M +RG      
Sbjct: 993  EAKQMF-EFMVSKHCFPD-VVTYN----TLIKGFCKYKRVEEGMEVFREMSQRGLVGNTV 1046

Query: 279  FFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDE 338
             + +  +      +   A+ I+  MV   G  P+   YN ++   C + +   AM + + 
Sbjct: 1047 TYNILIQGLFQAGDCDMAQEIFKEMVSD-GVPPNIMTYNTLLDGLCKNGKLEKAMVVFEY 1105

Query: 339  MVYNGAFPDIQTYNILFEFLVKGRKLWEASGLF 371
            +  +   P I TYNI+ E + K  K+ +   LF
Sbjct: 1106 LQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLF 1138



 Score = 47.4 bits (111), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 37/162 (22%), Positives = 67/162 (41%)

Query: 307 IGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWE 366
           IG++PD   YN +I   C +     A     E+   G  P++ TY  L   L    +  +
Sbjct: 287 IGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSD 346

Query: 367 ASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVA 426
           A+ L ++M+K +   N     A +  ++ +     A + ++ M+         T + L+ 
Sbjct: 347 AARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLIN 406

Query: 427 GLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARK 468
           GLC    + EA +    M  KG      + + L     KA++
Sbjct: 407 GLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKR 448


>gi|297739257|emb|CBI28908.3| unnamed protein product [Vitis vinifera]
          Length = 658

 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 121/506 (23%), Positives = 211/506 (41%), Gaps = 50/506 (9%)

Query: 10  HDDPSPDPHNKR--KRSTFASH---LDVPNLPPT----IKTLCEIIAN---TPSPTVEDV 57
           H    P PH  +    ST  S+   +    +PP     +  L ++ +N    PSP V  +
Sbjct: 33  HPHLRPPPHASKLGSTSTVGSNSRWVFTTPIPPEWVEPLYDLSDLASNPQPQPSPWVNQI 92

Query: 58  L-----------------DKTLIRVSQETVEQVLKFS--YSHPGPAVKFFRWSAYQLNDK 98
           L                  K LI++S   V  VLK       P  A +FF W+  Q N  
Sbjct: 93  LKLLDGSVNMESNLDSYCSKFLIKLSPNFVAFVLKSDAIRGKPDIAFRFFWWAGKQKNYI 152

Query: 99  HSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFA--SVFSSYVVADRVKDAIT 156
           H    +  ++D+L  +  FD +       K++  L +  FA  S+  S+     V++ + 
Sbjct: 153 HKIECYVSLIDVLSLSSDFDRVRCIFGEFKEKGFL-MTVFAANSLIRSFGALGMVEELLW 211

Query: 157 TFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVD-GRIKPDNDTYAILLEGWE 215
            +  M++ G +  ++  N LL+ +        A +   V++ G+I PD  +Y  +++G+ 
Sbjct: 212 VWRRMKESGIEPSLYTFNFLLNGLVNSMFIESAERVFEVMECGKIGPDVVSYNTMIKGYC 271

Query: 216 KERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC--DGIYETVNSL-KRMMERG 272
           K  +   A + F +M  +   +PD +    +YL TL++ C  +G +++   L + M ERG
Sbjct: 272 KAGNTKKAMEKFTDME-KRNLEPDKI----TYL-TLIQACYSEGNFDSCLHLYQEMEERG 325

Query: 273 CN-PGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGA 331
              P   +  +    C  G+ + G+       + + G + +  +Y  +I  Y  +     
Sbjct: 326 LEIPPHAYSLVIGGLCKDGRTVEGSSVFEN--MNKKGCKANVAIYTALIDAYGKNGNVNE 383

Query: 332 AMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVR 391
           A+ L + M   G  PD  TY ++   L K  +L EA   F     NE  +N     + + 
Sbjct: 384 AINLFERMKGEGFEPDDVTYGVIVNGLCKSGRLDEAVEYFEFCKDNEVAVNAMFYSSLID 443

Query: 392 VYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQV 451
               +     A KF++ M+E  C   S   N L+  L     + EA+   K M ++G   
Sbjct: 444 GLGKAGRVDEAEKFFEEMVERGCPQDSYCYNALIDALAKSGKMEEALVLFKRMEKEGCDQ 503

Query: 452 TPFALSKLKQILIKARKEAVYEELLK 477
           T +  + L   L K  +    EE LK
Sbjct: 504 TVYTYTILISGLFKEHRN---EEALK 526



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 63/253 (24%), Positives = 95/253 (37%), Gaps = 42/253 (16%)

Query: 266 KRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAM-VGRIGFRPDTHMYNMMISLYC 324
           +RM E G  P +  F       +    +  AE ++  M  G+IG  PD   YN MI  YC
Sbjct: 214 RRMKESGIEPSLYTFNFLLNGLVNSMFIESAERVFEVMECGKIG--PDVVSYNTMIKGYC 271

Query: 325 YSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM---------- 374
            +  T  AM+   +M      PD  TY  L +             L+ EM          
Sbjct: 272 KAGNTKKAMEKFTDMEKRNLEPDKITYLTLIQACYSEGNFDSCLHLYQEMEERGLEIPPH 331

Query: 375 ---------------VKNENV---LNHENCRAAVRVYMDSDDPY-------VAIKFWKYM 409
                          V+  +V   +N + C+A V +Y    D Y        AI  ++ M
Sbjct: 332 AYSLVIGGLCKDGRTVEGSSVFENMNKKGCKANVAIYTALIDAYGKNGNVNEAINLFERM 391

Query: 410 IENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARK- 468
                     T  ++V GLC    L EAV+Y +   +  + V     S L   L KA + 
Sbjct: 392 KGEGFEPDDVTYGVIVNGLCKSGRLDEAVEYFEFCKDNEVAVNAMFYSSLIDGLGKAGRV 451

Query: 469 ---EAVYEELLKK 478
              E  +EE++++
Sbjct: 452 DEAEKFFEEMVER 464



 Score = 48.1 bits (113), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 59/244 (24%), Positives = 96/244 (39%), Gaps = 44/244 (18%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATF-ASVFSSYVVADRVKDAITTFDVM 161
            + ++V+ L K+   D   +  +  K   V   A F +S+      A RV +A   F+ M
Sbjct: 402 TYGVIVNGLCKSGRLDEAVEYFEFCKDNEVAVNAMFYSSLIDGLGKAGRVDEAEKFFEEM 461

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAW-QFLRVVDGRIKPDNDTYAILLEGWEKERDV 220
            + GC  D +  N+L+ A+ + GK  +A   F R+          TY IL+ G  KE   
Sbjct: 462 VERGCPQDSYCYNALIDALAKSGKMEEALVLFKRMEKEGCDQTVYTYTILISGLFKEHRN 521

Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFF 280
             A K          WD                              M+++G  P    F
Sbjct: 522 EEALKL---------WD-----------------------------LMIDKGITPTTASF 543

Query: 281 K-LAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEM 339
           + L+   CL+G+  R  + +    +  +G  P+T  +  MI++ C +  T  A KL D +
Sbjct: 544 RALSVGLCLSGKVARACKIL--DELAPMGVIPET-AFEDMINVLCKAGRTEQACKLADGI 600

Query: 340 VYNG 343
           V  G
Sbjct: 601 VDRG 604


>gi|359475386|ref|XP_003631674.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Vitis vinifera]
          Length = 762

 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 87/326 (26%), Positives = 134/326 (41%), Gaps = 21/326 (6%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTI--DAWQ 191
           S A F  +  SY   + +  A+ T ++ +  G    V + NS+L AI R   ++   A +
Sbjct: 141 SSAVFDLMVKSYSHLNMIDQAVNTINLAKSSGFMPGVLSYNSVLDAIVRSRGSVKLSAEE 200

Query: 192 FLR-VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLIT 250
             R ++  R+ P+  TY IL+ G+    ++      FGEM  E      NV  Y++ LI 
Sbjct: 201 VYREMIRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEM--ERNGCLPNVVTYNT-LID 257

Query: 251 LLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFR 310
                  I E    LK M  +G  P +  + +         +++ A  I   M G  GF 
Sbjct: 258 AYCKMGRIDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEM-GYKGFT 316

Query: 311 PDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGL 370
           PD   YN +++ YC       A+ +  EMV NG  P + TY  L   + K R L  A   
Sbjct: 317 PDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEF 376

Query: 371 FNEMVKNENVLNHENCRAAVRVYMDSDDPYV-------AIKFWKYMIENHCSDLSETGNL 423
           F++M            R   R Y    D +        A +    M E+  S    T N 
Sbjct: 377 FDQM-------RIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNA 429

Query: 424 LVAGLCDMHMLPEAVKYAKGMAEKGI 449
            + G C +  + EA+   + M EKG+
Sbjct: 430 FIHGHCVLERMEEALGVVQEMVEKGL 455



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 92/439 (20%), Positives = 179/439 (40%), Gaps = 70/439 (15%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVM 161
           ++N++++ L +       W+ ++ M  +       T+ ++ + Y        A+     M
Sbjct: 286 SYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEM 345

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDV 220
            + G    V    +L++++C+      A +F   +  R ++P+  TY  L++G+ ++  +
Sbjct: 346 VRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLL 405

Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC--DGIYETVNSLKRMMERGCNPGMT 278
             A +   EM  E G+ P +V  Y++++      C  + + E +  ++ M+E+G  P + 
Sbjct: 406 NEAYRILNEMT-ESGFSP-SVVTYNAFI---HGHCVLERMEEALGVVQEMVEKGLAPDVV 460

Query: 279 FFKLAFEE-CLTGQNLRG-------------------AEFIWGAMVGR------------ 306
            +       C  G+  R                    +  I G    R            
Sbjct: 461 SYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEM 520

Query: 307 --IGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKL 364
             +G  PD   Y  +I+ YC   +   A+ L DEM++ G  PD  TY++L   L K  + 
Sbjct: 521 LDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQART 580

Query: 365 WEASGLFNEMVKNENVLNH-------ENCR--------AAVRVYMDSDDPYVAIKFWKYM 409
            EA  L  +++  E+V +        ENC         A ++ +      + A + ++ M
Sbjct: 581 REAKRLLFKLIYEESVPSDVTYDTLIENCSNIEFKSVVALIKGFCMKGLMHEADRVFESM 640

Query: 410 IENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKAR-K 468
           +E +        N+++ G C    LP+A    K M   G    P  ++ +   LIKA  K
Sbjct: 641 VERNHKPGEAVYNVIIHGHCRGGNLPKAFNLYKEMIHSGF--VPHTVTVIT--LIKALFK 696

Query: 469 EAVYEEL-------LKKCK 480
           E + EE+       L+ C+
Sbjct: 697 EGMNEEMSEVIGDTLRSCR 715



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 71/332 (21%), Positives = 136/332 (40%), Gaps = 63/332 (18%)

Query: 84  AVKFF---RWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFA 139
           A++FF   R    + N++     +  ++D   +  L +  +  +  M +     S+ T+ 
Sbjct: 373 AMEFFDQMRIRGLRPNER----TYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYN 428

Query: 140 SVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDG 198
           +    + V +R+++A+     M + G   DV + ++++S  CR G+   A+Q  + +V+ 
Sbjct: 429 AFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEK 488

Query: 199 RIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDN---VPAYDSYLI------ 249
            + PD  TY+ L++G  + R +  A     EM +++G  PD        ++Y +      
Sbjct: 489 GVSPDAVTYSSLIQGLCEMRRLTEACDLSQEM-LDMGLPPDEFTYTTLINAYCVEGDLNK 547

Query: 250 -------TLLKGC--DGIYETV--NSLKRMMERGCNPGMTFFKLAFEE------------ 286
                   + KG   D +  +V  N L +   R        FKL +EE            
Sbjct: 548 ALHLHDEMIHKGFLPDAVTYSVLINGLNKQ-ARTREAKRLLFKLIYEESVPSDVTYDTLI 606

Query: 287 ------------------CLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNE 328
                             C+ G  +  A+ ++ +MV R   +P   +YN++I  +C    
Sbjct: 607 ENCSNIEFKSVVALIKGFCMKGL-MHEADRVFESMVER-NHKPGEAVYNVIIHGHCRGGN 664

Query: 329 TGAAMKLLDEMVYNGAFPDIQTYNILFEFLVK 360
              A  L  EM+++G  P   T   L + L K
Sbjct: 665 LPKAFNLYKEMIHSGFVPHTVTVITLIKALFK 696



 Score = 42.4 bits (98), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 30/144 (20%), Positives = 63/144 (43%), Gaps = 2/144 (1%)

Query: 309 FRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEAS 368
           +   + ++++M+  Y + N    A+  ++    +G  P + +YN + + +V+ R   + S
Sbjct: 138 YNSSSAVFDLMVKSYSHLNMIDQAVNTINLAKSSGFMPGVLSYNSVLDAIVRSRGSVKLS 197

Query: 369 G--LFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVA 426
              ++ EM+++    N       +R +    +    +  +  M  N C     T N L+ 
Sbjct: 198 AEEVYREMIRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLID 257

Query: 427 GLCDMHMLPEAVKYAKGMAEKGIQ 450
             C M  + EA    K M+ KG+Q
Sbjct: 258 AYCKMGRIDEAFGLLKSMSSKGMQ 281


>gi|357116365|ref|XP_003559952.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Brachypodium distachyon]
          Length = 627

 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 85/320 (26%), Positives = 137/320 (42%), Gaps = 22/320 (6%)

Query: 174 NSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVI 232
            +L+ A+C + +T  A   LR +    ++PD  TY  L+ G     DV  A +   EM  
Sbjct: 117 TTLMRALCAERRTGQAVGLLRDMQASGVRPDVVTYGTLIRGLCDAADVDKAVELLREMC- 175

Query: 233 EVGWDPDNVPAYDSYLITLLKGCDGIYETVNSL-KRMMERGCNPGMTFFKLAFEECLTGQ 291
           E G +P NV  Y   L    K   G +E V+ + + M  RG  P +  +    +      
Sbjct: 176 ESGIEP-NVVVYSCLLQGYCKA--GRWECVSKVFEEMSGRGIEPDVVMYTGLIDSLCREG 232

Query: 292 NLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTY 351
            ++ A  +   M+ R G  P+   YN++I+  C       AM L + M+  G   D  TY
Sbjct: 233 KVKKATQVMDKMMER-GLEPNVVTYNVLINSMCKEGSVKEAMSLRNNMLEKGVALDAVTY 291

Query: 352 NILFEFLVKGRKLWEASGLFNEMVKNENVL--NHENCRAAVRVYMDSDDPYVAIKFWKYM 409
           N L   L    ++ EA GL  EM+  E ++  N     + +     +     A +    M
Sbjct: 292 NTLITGLSGVLEMDEAMGLLEEMIHGETMVEPNVVTFNSVIHGLCKTGRMRQAFQVRDMM 351

Query: 410 IENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKL---------- 459
            EN C+    T NLL+ GL  +H + +A++    MA  G++   F  S L          
Sbjct: 352 AENGCACNLVTFNLLIGGLLRVHKVKKAMELMDEMASSGLEPDSFTYSILINGFCKMWQV 411

Query: 460 ---KQILIKARKEAVYEELL 476
              + +L K R++ +  EL+
Sbjct: 412 DRAESLLSKMRRDGIEPELV 431



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 61/239 (25%), Positives = 113/239 (47%), Gaps = 15/239 (6%)

Query: 125 KSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDG 184
           ++M + NV+   TF SV        R++ A    D+M + GC  ++   N L+  + R  
Sbjct: 318 ETMVEPNVV---TFNSVIHGLCKTGRMRQAFQVRDMMAENGCACNLVTFNLLIGGLLRVH 374

Query: 185 KTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPA 243
           K   A + +  +    ++PD+ TY+IL+ G+ K   V  A+    +M  + G +P+ V  
Sbjct: 375 KVKKAMELMDEMASSGLEPDSFTYSILINGFCKMWQVDRAESLLSKMRRD-GIEPELV-- 431

Query: 244 YDSYLITLLKGCD-GIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGA 302
              Y+  L   C+ G+ E   +    M + C   +  +          ++ + AE     
Sbjct: 432 --HYIPLLAALCEQGMMEQARNFFDEMHKNCKLDVVAYSTMIHGACRLRDRKSAEEFLKH 489

Query: 303 MVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKG 361
           M+   G  PD+  Y+M+I+++  S + GAA ++L +M  +G  PD+     +F+ L+KG
Sbjct: 490 MLDE-GLIPDSVTYSMLINMFANSGDLGAAERVLKQMTASGFVPDVA----VFDSLIKG 543



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 74/320 (23%), Positives = 130/320 (40%), Gaps = 20/320 (6%)

Query: 138 FASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VV 196
           +  +  S     +VK A    D M + G + +V   N L++++C++G   +A      ++
Sbjct: 221 YTGLIDSLCREGKVKKATQVMDKMMERGLEPNVVTYNVLINSMCKEGSVKEAMSLRNNML 280

Query: 197 DGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD 256
           +  +  D  TY  L+ G     ++  A     EM+        NV  ++S +  L K   
Sbjct: 281 EKGVALDAVTYNTLITGLSGVLEMDEAMGLLEEMIHGETMVEPNVVTFNSVIHGLCK--T 338

Query: 257 GIYETVNSLKRMM-ERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHM 315
           G       ++ MM E GC   +  F L     L    ++ A  +   M    G  PD+  
Sbjct: 339 GRMRQAFQVRDMMAENGCACNLVTFNLLIGGLLRVHKVKKAMELMDEMASS-GLEPDSFT 397

Query: 316 YNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
           Y+++I+ +C   +   A  LL +M  +G  P++  Y  L   L +   + +A   F+EM 
Sbjct: 398 YSILINGFCKMWQVDRAESLLSKMRRDGIEPELVHYIPLLAALCEQGMMEQARNFFDEM- 456

Query: 376 KNENVLNHENCRAAVRVYMDS-------DDPYVAIKFWKYMIENHCSDLSETGNLLVAGL 428
                  H+NC+  V  Y           D   A +F K+M++      S T ++L+   
Sbjct: 457 -------HKNCKLDVVAYSTMIHGACRLRDRKSAEEFLKHMLDEGLIPDSVTYSMLINMF 509

Query: 429 CDMHMLPEAVKYAKGMAEKG 448
            +   L  A +  K M   G
Sbjct: 510 ANSGDLGAAERVLKQMTASG 529



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 68/248 (27%), Positives = 118/248 (47%), Gaps = 9/248 (3%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           ++  ++ +   Y  A R +     F+ M   G + DV     L+ ++CR+GK   A Q +
Sbjct: 182 NVVVYSCLLQGYCKAGRWECVSKVFEEMSGRGIEPDVVMYTGLIDSLCREGKVKKATQVM 241

Query: 194 -RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
            ++++  ++P+  TY +L+    KE  V  A      M +E G   D V  Y++ LIT L
Sbjct: 242 DKMMERGLEPNVVTYNVLINSMCKEGSVKEAMSLRNNM-LEKGVALDAV-TYNT-LITGL 298

Query: 253 KGCDGIYETVNSLKRMM--ERGCNPG-MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGF 309
            G   + E +  L+ M+  E    P  +TF  +    C TG+ +R A F    M+   G 
Sbjct: 299 SGVLEMDEAMGLLEEMIHGETMVEPNVVTFNSVIHGLCKTGR-MRQA-FQVRDMMAENGC 356

Query: 310 RPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASG 369
             +   +N++I      ++   AM+L+DEM  +G  PD  TY+IL     K  ++  A  
Sbjct: 357 ACNLVTFNLLIGGLLRVHKVKKAMELMDEMASSGLEPDSFTYSILINGFCKMWQVDRAES 416

Query: 370 LFNEMVKN 377
           L ++M ++
Sbjct: 417 LLSKMRRD 424


>gi|356523285|ref|XP_003530271.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Glycine max]
          Length = 703

 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 85/324 (26%), Positives = 149/324 (45%), Gaps = 11/324 (3%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-F 192
           +L T++ +   Y  +  V + +   + ME+ G K DVF  +SL+SA C +G      + F
Sbjct: 184 NLVTYSVLIDCYCKSGEVGEGLGLLEEMEREGLKADVFVYSSLISAFCGEGDIETGRELF 243

Query: 193 LRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
             ++  ++ P+  TY+ L++G  +      A +   +M    G  PD V AY      L 
Sbjct: 244 DEMLRRKVSPNVVTYSCLMQGLGRTGRWREASEMLKDMTAR-GVRPD-VVAYTVLADGLC 301

Query: 253 K-GCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRP 311
           K G  G  + +  L  M+++G  PG   + +          +  A  +   MV + G +P
Sbjct: 302 KNGRAG--DAIKVLDLMVQKGEEPGTLTYNVVVNGLCKEDRMDDAFGVVEMMVKK-GKKP 358

Query: 312 DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAF---PDIQTYNILFEFLVKGRKLWEAS 368
           D   YN ++   C + +   AM L  +++ +  F   PD+ T N L + L K  ++ +A+
Sbjct: 359 DAVTYNTLLKGLCGAGKIHEAMDLW-KLLLSEKFHVKPDVFTCNNLIQGLCKEGRVHDAA 417

Query: 369 GLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGL 428
            + + MV+     N       +  Y+ +     A+K WKY +E+  S  S T ++++ GL
Sbjct: 418 RIHSSMVEMGLQGNIVTYNFLIEGYLAARKLIEALKLWKYAVESGFSPNSMTYSVMINGL 477

Query: 429 CDMHMLPEAVKYAKGMAEKGIQVT 452
           C M ML  A      M + GI+ T
Sbjct: 478 CKMQMLSVARGLFCKMKDSGIRPT 501



 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 106/443 (23%), Positives = 171/443 (38%), Gaps = 58/443 (13%)

Query: 77  SYSHPGP-----AVKFFRWSAYQLNDKHSPY---AWNLVVDLLGKNCLFDAMWDAIKSMK 128
           S +H  P     AV  F  +    ND  SP    A + ++D L K   +DA+      M 
Sbjct: 12  SIAHTQPHSLSDAVSLFHRTID--NDPTSPPSEPACSTLIDNLRKARQYDAVVSVYHKMV 69

Query: 129 KENVL-SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTI 187
              VL    + +++  S+V       A +   +M + G   +V+ LN +L   CR G+  
Sbjct: 70  SALVLPRFTSLSALTESFVNTHHPSFAFSVLSLMTKRGFGVNVYNLNLVLKGFCRSGQCD 129

Query: 188 DAWQFL----------------------------RVVDGRI-----------KPDNDTYA 208
            A                                R+ + R+           +P+  TY+
Sbjct: 130 KAMSLFSQMKRNYDCVVPDCVTYNTLVNGFCKAKRLAEARVLFEAMKKGGDCRPNLVTYS 189

Query: 209 ILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSL-KR 267
           +L++ + K  +V        EM  E G   D V  Y S LI+   G +G  ET   L   
Sbjct: 190 VLIDCYCKSGEVGEGLGLLEEMERE-GLKAD-VFVYSS-LISAFCG-EGDIETGRELFDE 245

Query: 268 MMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSN 327
           M+ R  +P +  +    +        R A  +   M  R G RPD   Y ++    C + 
Sbjct: 246 MLRRKVSPNVVTYSCLMQGLGRTGRWREASEMLKDMTAR-GVRPDVVAYTVLADGLCKNG 304

Query: 328 ETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCR 387
             G A+K+LD MV  G  P   TYN++   L K  ++ +A G+   MVK     +     
Sbjct: 305 RAGDAIKVLDLMVQKGEEPGTLTYNVVVNGLCKEDRMDDAFGVVEMMVKKGKKPDAVTYN 364

Query: 388 AAVRVYMDSDDPYVAIKFWKYMIEN--HCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMA 445
             ++    +   + A+  WK ++    H      T N L+ GLC    + +A +    M 
Sbjct: 365 TLLKGLCGAGKIHEAMDLWKLLLSEKFHVKPDVFTCNNLIQGLCKEGRVHDAARIHSSMV 424

Query: 446 EKGIQVTPFALSKLKQILIKARK 468
           E G+Q      + L +  + ARK
Sbjct: 425 EMGLQGNIVTYNFLIEGYLAARK 447



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 93/404 (23%), Positives = 160/404 (39%), Gaps = 15/404 (3%)

Query: 88  FRWSAYQLNDKH----SPYAWNLVVDLLGKNCLFDAMWDAIKSMKKEN---VLSLATFAS 140
           F +S   L  K     + Y  NLV+    ++   D        MK+     V    T+ +
Sbjct: 95  FAFSVLSLMTKRGFGVNVYNLNLVLKGFCRSGQCDKAMSLFSQMKRNYDCVVPDCVTYNT 154

Query: 141 VFSSYVVADRVKDAITTFDVMEQYG-CKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR 199
           + + +  A R+ +A   F+ M++ G C+ ++   + L+   C+ G+  +    L  ++  
Sbjct: 155 LVNGFCKAKRLAEARVLFEAMKKGGDCRPNLVTYSVLIDCYCKSGEVGEGLGLLEEMERE 214

Query: 200 -IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGI 258
            +K D   Y+ L+  +  E D+   ++ F EM +     P NV  Y S L+  L      
Sbjct: 215 GLKADVFVYSSLISAFCGEGDIETGRELFDEM-LRRKVSP-NVVTY-SCLMQGLGRTGRW 271

Query: 259 YETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNM 318
            E    LK M  RG  P +  + +  +          A  +   MV + G  P T  YN+
Sbjct: 272 REASEMLKDMTARGVRPDVVAYTVLADGLCKNGRAGDAIKVLDLMVQK-GEEPGTLTYNV 330

Query: 319 MISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNE 378
           +++  C  +    A  +++ MV  G  PD  TYN L + L    K+ EA  L+  ++  +
Sbjct: 331 VVNGLCKEDRMDDAFGVVEMMVKKGKKPDAVTYNTLLKGLCGAGKIHEAMDLWKLLLSEK 390

Query: 379 NVLNHE--NCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPE 436
             +  +   C   ++        + A +    M+E        T N L+ G      L E
Sbjct: 391 FHVKPDVFTCNNLIQGLCKEGRVHDAARIHSSMVEMGLQGNIVTYNFLIEGYLAARKLIE 450

Query: 437 AVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKCK 480
           A+K  K   E G        S +   L K +  +V   L  K K
Sbjct: 451 ALKLWKYAVESGFSPNSMTYSVMINGLCKMQMLSVARGLFCKMK 494



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 92/357 (25%), Positives = 146/357 (40%), Gaps = 57/357 (15%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSM----KKENVLSLATFASVFSSYVVADRVKDAITTF 158
           A+ ++ D L KN       DAIK +    +K       T+  V +     DR+ DA    
Sbjct: 292 AYTVLADGLCKN---GRAGDAIKVLDLMVQKGEEPGTLTYNVVVNGLCKEDRMDDAFGVV 348

Query: 159 DVMEQYGCKHDVFALNSLLSAICRDGK---TIDAWQFLRVVDGRIKPDNDTYAILLEGWE 215
           ++M + G K D    N+LL  +C  GK    +D W+ L      +KPD  T   L++G  
Sbjct: 349 EMMVKKGKKPDAVTYNTLLKGLCGAGKIHEAMDLWKLLLSEKFHVKPDVFTCNNLIQGLC 408

Query: 216 KERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNP 275
           KE  V +A +    MV E+G    N+  Y+ +LI          E   + ++++E     
Sbjct: 409 KEGRVHDAARIHSSMV-EMGLQ-GNIVTYN-FLI----------EGYLAARKLIE----- 450

Query: 276 GMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKL 335
            +  +K A E                      GF P++  Y++MI+  C       A  L
Sbjct: 451 ALKLWKYAVES---------------------GFSPNSMTYSVMINGLCKMQMLSVARGL 489

Query: 336 LDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMD 395
             +M  +G  P +  YN L   L +   L +A  LF EM    NV NH     +  + +D
Sbjct: 490 FCKMKDSGIRPTVIDYNALMTSLCREDSLEQARSLFQEM---RNV-NHNVDVVSFNIIID 545

Query: 396 SDDPYVAIKFWKYMI-ENHCSDL---SETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448
                  +K  K ++ E    DL   + T ++L+     + ML EA+   + M   G
Sbjct: 546 GTLKAGDVKSAKELLSEMFMMDLVPDAVTFSILINRFSKLGMLDEAMGLYEKMVSCG 602


>gi|32527606|gb|AAP86200.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
          Length = 654

 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 78/324 (24%), Positives = 141/324 (43%), Gaps = 12/324 (3%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           ++ TF+++     V DR+ +A+  F  M    CK +V    +L++ +CR+G+ ++A   L
Sbjct: 147 TVVTFSTLLHGLCVEDRISEALDLFHQM----CKPNVVTFTTLMNGLCREGRVVEAVALL 202

Query: 194 -RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAY----DSYL 248
            R+++  ++P+  TY  +++G  K  D  +A     +M  EV     NV  +     + +
Sbjct: 203 DRMLEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKME-EVSHIKPNVVIWPLERRTCM 261

Query: 249 ITLLKGCDGIYETVNSLKRMMERG-CNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRI 307
           I          E    L+ M+ER   +P +  +       +       AE ++  M+ R 
Sbjct: 262 INGFCSSGRWSEAQQLLQEMLERKKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPR- 320

Query: 308 GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEA 367
           G  P T  Y+ MI  +C  N   AA  +   M   G  PDI T+N L     + +++ + 
Sbjct: 321 GIIPSTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPDIITFNTLIAGYCRAKRVDDG 380

Query: 368 SGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAG 427
             L +EM +   V N       +  +    D   A    + M+ +       T N L+ G
Sbjct: 381 IKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMVSSGVCPNVVTCNTLLDG 440

Query: 428 LCDMHMLPEAVKYAKGMAEKGIQV 451
           LCD   L +A++  K M +  + +
Sbjct: 441 LCDNGKLKDALEMFKAMQKSKMDI 464



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 76/319 (23%), Positives = 127/319 (39%), Gaps = 32/319 (10%)

Query: 89  RWS-AYQL------NDKHSP--YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATF 138
           RWS A QL        K SP    +N +++   K   F    +    M    ++ S  T+
Sbjct: 270 RWSEAQQLLQEMLERKKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPSTITY 329

Query: 139 ASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVD 197
           +S+   +   +R+  A   F +M   GC  D+   N+L++  CR  +  D  + L  + +
Sbjct: 330 SSMIDGFCKQNRLDAAEHMFYLMATKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTE 389

Query: 198 GRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG-CD 256
             +  +  TY  L+ G+ +  D+  A+    EMV   G  P+ V        TLL G CD
Sbjct: 390 AGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMV-SSGVCPNVVTCN-----TLLDGLCD 443

Query: 257 G--IYETVNSLKRMME-----------RGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAM 303
              + + +   K M +            G  P +  + +     +       AE ++  M
Sbjct: 444 NGKLKDALEMFKAMQKSKMDIDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEM 503

Query: 304 VGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRK 363
             R G  PDT  YN +I   C  +    A ++ D M      P++ T+  L     K  +
Sbjct: 504 PHR-GIVPDTITYNSVIHGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGR 562

Query: 364 LWEASGLFNEMVKNENVLN 382
           + +   LF EM +   V N
Sbjct: 563 VDDGLELFCEMGRRGIVAN 581



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 57/256 (22%), Positives = 98/256 (38%), Gaps = 18/256 (7%)

Query: 132 VLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ 191
           V +  T+ ++   +     +  A      M   G   +V   N+LL  +C +GK  DA +
Sbjct: 393 VANTITYTTLIHGFCQVGDLNAAQDLLQEMVSSGVCPNVVTCNTLLDGLCDNGKLKDALE 452

Query: 192 FLRVVD------------GRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPD 239
             + +               ++PD  TY IL+ G   E     A++ + EM    G  PD
Sbjct: 453 MFKAMQKSKMDIDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMP-HRGIVPD 511

Query: 240 NVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGM-TFFKLAFEECLTGQNLRGAEF 298
            +  Y+S +  L K    + E       M  +  +P + TF  L    C  G+   G E 
Sbjct: 512 TI-TYNSVIHGLCKQ-SRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLEL 569

Query: 299 IWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFL 358
                +GR G   +   Y  +I  +        A+ +  EM+ +G +PD  T   +   L
Sbjct: 570 F--CEMGRRGIVANAITYITLIHGFRKVGNINGALDIFQEMMASGVYPDTITIRNMLTGL 627

Query: 359 VKGRKLWEASGLFNEM 374
               +L  A  +  ++
Sbjct: 628 WSKEELKRAVAMLEDL 643



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 59/254 (23%), Positives = 98/254 (38%), Gaps = 14/254 (5%)

Query: 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR 194
           + TF ++ + Y  A RV D I     M + G   +     +L+   C+ G    A   L+
Sbjct: 361 IITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQ 420

Query: 195 -VVDGRIKPDNDTYAILLEGWEKERDVANAKKTF-----GEMVIEV-----GWDPDNVPA 243
            +V   + P+  T   LL+G      + +A + F      +M I+      G +PD V  
Sbjct: 421 EMVSSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASHPFNGVEPD-VQT 479

Query: 244 YDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAM 303
           Y+  LI+ L       E     + M  RG  P    +            L  A  ++ +M
Sbjct: 480 YN-ILISGLINEGKFLEAEELYEEMPHRGIVPDTITYNSVIHGLCKQSRLDEATQMFDSM 538

Query: 304 VGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRK 363
            G   F P+   +  +I+ YC +      ++L  EM   G   +  TY  L     K   
Sbjct: 539 -GSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLIHGFRKVGN 597

Query: 364 LWEASGLFNEMVKN 377
           +  A  +F EM+ +
Sbjct: 598 INGALDIFQEMMAS 611


>gi|359485438|ref|XP_003633275.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 572

 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 94/358 (26%), Positives = 158/358 (44%), Gaps = 30/358 (8%)

Query: 99  HSPYAWNLVVD----LLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDA 154
           H+ Y  N++++    L      F  + D +K   +    S ATF ++     V  ++ +A
Sbjct: 87  HNTYTLNILINSFCHLNRLGFAFSVLGDILKLGYQP---STATFTTLIRGLCVEGKIGEA 143

Query: 155 ITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEG 213
           +  FD M   G + DV    +L++ +C+ G T  A +FLR ++ R  +P    Y+ +++ 
Sbjct: 144 LQLFDKMTGEGFQPDVLTYGTLINGLCKVGNTSTAIRFLRSMEQRNCRPTVVVYSTIIDS 203

Query: 214 WEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGC 273
             K+R +  A   F +M+ + G  P+N   Y S LI  L       E +     M+ R  
Sbjct: 204 LCKDRQLTEALSLFSDMLAK-GISPNNF-TYSS-LIHGLCILGHWKEAIRLFYAMIHRKI 260

Query: 274 NP-GMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAA 332
            P  +TF  L    C  G  ++ A ++   M+ +   +PD   YN ++  +C  +E G  
Sbjct: 261 MPDQLTFNTLVDALCKEGMVVK-AHYVVDVMI-QSDLKPDVVTYNSLMDGHCLRSEMGKT 318

Query: 333 MKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNE--------NVLNHE 384
           + + D MV  G  P + +Y  L     K + + +A GLF EM +          N L H 
Sbjct: 319 VNVFDTMVRKGCVPSVISYTTLINGYCKIQIMDKAMGLFEEMSQQGLIPDTVTYNTLIHG 378

Query: 385 NCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAK 442
            C   V    D+    +A+ F + ++     DL  T  +L   LC  H L EA+   K
Sbjct: 379 LCH--VGRLRDA----IAL-FHEMVVYGQIPDLV-TYRILFDYLCKNHRLAEAMVLLK 428



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 93/389 (23%), Positives = 161/389 (41%), Gaps = 52/389 (13%)

Query: 84  AVKFFRWSAYQLNDKHSPYAWNLVVDLLGKN-------CLFDAMWDAIKSMKKENVLSLA 136
           A++F R S  Q N + +   ++ ++D L K+        LF  M    K +   N     
Sbjct: 178 AIRFLR-SMEQRNCRPTVVVYSTIIDSLCKDRQLTEALSLFSDMLA--KGISPNNF---- 230

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRV- 195
           T++S+     +    K+AI  F  M       D    N+L+ A+C++G  + A   + V 
Sbjct: 231 TYSSLIHGLCILGHWKEAIRLFYAMIHRKIMPDQLTFNTLVDALCKEGMVVKAHYVVDVM 290

Query: 196 VDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYL-----IT 250
           +   +KPD  TY  L++G     ++      F  MV + G  P +V +Y + +     I 
Sbjct: 291 IQSDLKPDVVTYNSLMDGHCLRSEMGKTVNVFDTMVRK-GCVP-SVISYTTLINGYCKIQ 348

Query: 251 LLKGCDGIYE------------TVNSL-----------------KRMMERGCNPGMTFFK 281
           ++    G++E            T N+L                   M+  G  P +  ++
Sbjct: 349 IMDKAMGLFEEMSQQGLIPDTVTYNTLIHGLCHVGRLRDAIALFHEMVVYGQIPDLVTYR 408

Query: 282 LAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVY 341
           + F+       L  A  +   + G     PD H+Y++++   C + E  AA  L  ++  
Sbjct: 409 ILFDYLCKNHRLAEAMVLLKVIEGT-NLDPDIHIYSIVMDGMCRAGELEAARDLFSKLSS 467

Query: 342 NGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYV 401
            G  PD++TY I+   L +   L EAS LF EM +N    N        R ++ +++   
Sbjct: 468 KGLHPDVRTYTIMINGLCQQGLLAEASKLFGEMDENGCSPNACTYNLITRGFLRNNETLR 527

Query: 402 AIKFWKYMIENHCSDLSETGNLLVAGLCD 430
           AI+ ++ M+    S    T  LLV  L D
Sbjct: 528 AIQLFQEMLSRGFSIDVSTTTLLVEMLSD 556



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 92/384 (23%), Positives = 161/384 (41%), Gaps = 55/384 (14%)

Query: 124 IKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICR 182
           ++SM++ N   ++  ++++  S     ++ +A++ F  M   G   + F  +SL+  +C 
Sbjct: 182 LRSMEQRNCRPTVVVYSTIIDSLCKDRQLTEALSLFSDMLAKGISPNNFTYSSLIHGLCI 241

Query: 183 DGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNV 241
            G   +A + F  ++  +I PD  T+  L++   KE  V  A     +++I+    PD V
Sbjct: 242 LGHWKEAIRLFYAMIHRKIMPDQLTFNTLVDALCKEGMVVKAHYVV-DVMIQSDLKPD-V 299

Query: 242 PAYDSYLITLLKGCDG------IYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRG 295
             Y+S +       DG      + +TVN    M+ +GC P +  +          Q +  
Sbjct: 300 VTYNSLM-------DGHCLRSEMGKTVNVFDTMVRKGCVPSVISYTTLINGYCKIQIMDK 352

Query: 296 AEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILF 355
           A  ++  M  + G  PDT  YN +I   C+      A+ L  EMV  G  PD+ TY ILF
Sbjct: 353 AMGLFEEM-SQQGLIPDTVTYNTLIHGLCHVGRLRDAIALFHEMVVYGQIPDLVTYRILF 411

Query: 356 EFLVKGRKLWEASGLFNEMVKNEN---------VLNHENCRAA----------------- 389
           ++L K  +L EA  L  ++++  N         ++    CRA                  
Sbjct: 412 DYLCKNHRLAEAMVLL-KVIEGTNLDPDIHIYSIVMDGMCRAGELEAARDLFSKLSSKGL 470

Query: 390 ---VRVYMDSDDPYV-------AIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVK 439
              VR Y    +          A K +  M EN CS  + T NL+  G    +    A++
Sbjct: 471 HPDVRTYTIMINGLCQQGLLAEASKLFGEMDENGCSPNACTYNLITRGFLRNNETLRAIQ 530

Query: 440 YAKGMAEKGIQVTPFALSKLKQIL 463
             + M  +G  +     + L ++L
Sbjct: 531 LFQEMLSRGFSIDVSTTTLLVEML 554



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 79/214 (36%), Gaps = 14/214 (6%)

Query: 259 YETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNM 318
           Y TV SL + M+    P  T+            N  G  F     + ++G++P T  +  
Sbjct: 70  YSTVLSLYKQMDSFGIPHNTYTLNILINSFCHLNRLGFAFSVLGDILKLGYQPSTATFTT 129

Query: 319 MISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNE 378
           +I   C   + G A++L D+M   G  PD+ TY  L   L K      A      M    
Sbjct: 130 LIRGLCVEGKIGEALQLFDKMTGEGFQPDVLTYGTLINGLCKVGNTSTAIRFLRSM---- 185

Query: 379 NVLNHENCRAAVRVYMDSDDPYV-------AIKFWKYMIENHCSDLSETGNLLVAGLCDM 431
                 NCR  V VY    D          A+  +  M+    S  + T + L+ GLC +
Sbjct: 186 ---EQRNCRPTVVVYSTIIDSLCKDRQLTEALSLFSDMLAKGISPNNFTYSSLIHGLCIL 242

Query: 432 HMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIK 465
               EA++    M  + I       + L   L K
Sbjct: 243 GHWKEAIRLFYAMIHRKIMPDQLTFNTLVDALCK 276


>gi|296083087|emb|CBI22491.3| unnamed protein product [Vitis vinifera]
          Length = 548

 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 88/349 (25%), Positives = 154/349 (44%), Gaps = 16/349 (4%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKEN-VLSLATFASVFSSYVVADRVKDAITTFDVM 161
            WN ++ + G+N +   +    K MK+   V    TF ++ SSY        A+  +  M
Sbjct: 176 TWNTLLSVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISSYSRCGSFDQAMAVYKRM 235

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLE----GWEK 216
            + G   D+ + N++L+A+ R G    + + L  + DGR KP+  TY  LL     G E 
Sbjct: 236 LEAGVNPDLSSYNAVLAALARGGLWKQSEKVLAEMKDGRCKPNELTYCSLLHAYANGKEI 295

Query: 217 ERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPG 276
           ER  A A++ +  ++     +P  V      L+ +   CD + ET  +   + +RG +P 
Sbjct: 296 ERMCALAEEIYSGII-----EPRAVLL--KTLVLVNSKCDLLMETERAFLELRQRGFSPD 348

Query: 277 MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLL 336
           +T            Q +  A  I   M  R GF P    YN ++ +Y  S     + ++L
Sbjct: 349 ITTLNAMVSIYGRRQMVAKANEILDCM-KRGGFTPSLTTYNSLMYMYSRSANFERSEEIL 407

Query: 337 DEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDS 396
            E++  G  PDI +YN +     +  ++ +AS + +EM ++    +       +  Y  +
Sbjct: 408 REILAKGIRPDIISYNTVIYAYCRNGRMRDASRVLSEMRESGPAPDIITYNTFIASYA-A 466

Query: 397 DDPYV-AIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGM 444
           D  +V AI    YMI++ C     T N +V   C ++   EA  +   +
Sbjct: 467 DSMFVEAIDVVCYMIKHGCKPNQSTYNSIVDWYCKLNRRDEASMFVNNL 515



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 81/177 (45%), Gaps = 9/177 (5%)

Query: 194 RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLK 253
           ++V+  IKPD  TY  LL G+EK      A + F EM  E G  P N+  +++ LI +  
Sbjct: 94  QMVEKGIKPDVFTYTTLLSGFEKAGKDKAAVQIFEEMRNE-GCKP-NICTFNA-LIKMHG 150

Query: 254 GCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAM--VGRIGFRP 311
                 E +   + +    C+P +  +       + GQN   +E + G    + R GF P
Sbjct: 151 NRGKFTEMMKVFEDIKTFQCSPDIVTWNTLLS--VFGQNGMDSE-VSGVFKEMKRAGFVP 207

Query: 312 DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEAS 368
           +   +N +IS Y        AM +   M+  G  PD+ +YN +   L +G  LW+ S
Sbjct: 208 ERDTFNTLISSYSRCGSFDQAMAVYKRMLEAGVNPDLSSYNAVLAALARG-GLWKQS 263



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 55/227 (24%), Positives = 96/227 (42%), Gaps = 15/227 (6%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRV 195
           T+ ++ S +  A + K A+  F+ M   GCK ++   N+L+      GK  +  + F  +
Sbjct: 106 TYTTLLSGFEKAGKDKAAVQIFEEMRNEGCKPNICTFNALIKMHGNRGKFTEMMKVFEDI 165

Query: 196 VDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSY--LITLLK 253
              +  PD  T+  LL  + +    +     F EM    G+    VP  D++  LI+   
Sbjct: 166 KTFQCSPDIVTWNTLLSVFGQNGMDSEVSGVFKEMK-RAGF----VPERDTFNTLISSYS 220

Query: 254 GCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMV-GRIGFRPD 312
            C    + +   KRM+E G NP ++ +         G   + +E +   M  GR   +P+
Sbjct: 221 RCGSFDQAMAVYKRMLEAGVNPDLSSYNAVLAALARGGLWKQSEKVLAEMKDGRC--KPN 278

Query: 313 THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLV 359
              Y  ++  Y    E    M  L E +Y+G    I+   +L + LV
Sbjct: 279 ELTYCSLLHAYANGKEI-ERMCALAEEIYSGI---IEPRAVLLKTLV 321


>gi|449442465|ref|XP_004139002.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g47360-like [Cucumis sativus]
 gi|449505643|ref|XP_004162530.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g47360-like [Cucumis sativus]
          Length = 475

 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 103/421 (24%), Positives = 186/421 (44%), Gaps = 24/421 (5%)

Query: 58  LDKTL----IRVSQETVEQVL-KFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLG 112
           LDKTL     ++    V +VL K S+      ++FF W+  Q N +HS + ++   +L+G
Sbjct: 46  LDKTLATLKTKLDSRCVNEVLYKCSFELSQMGLRFFIWAGRQPNYRHSSFMYSRACELIG 105

Query: 113 KNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVF 171
            N     +++ I+  ++E  L  +  F  + +    A   K+A++    M ++  + D  
Sbjct: 106 INVSPCLLFNVIEDYRREGCLVDIRMFKIILNLCKEAKLAKEALSILRKMSEFHLRADTT 165

Query: 172 ALNSLLSAICRDGKTIDAWQFLRVVDG-RIKPDNDTYAILLEGWEKERDVANAKKTFGEM 230
             N ++      G+   A + ++ +D   I P+  TY  +L+G+       +A   F +M
Sbjct: 166 MYNLVIRLFTEKGEMDKAMELMKEMDSVDIHPNMITYISMLKGFCDVGRWEDAYGLFKDM 225

Query: 231 VIEVGWDPDNVPAYDSYLIT---LLKGCDGIYETVNSLKRMMERG--CNPG-MTFFKLAF 284
             E G  P+ V    S L+     L+  D + E    LK M ++G  C+P  +T+  +  
Sbjct: 226 K-ENGCAPNTVVY--SVLVNGAIRLRIMDRLMEM---LKEMEKQGGTCSPNTVTYTSIIQ 279

Query: 285 EECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGA 344
             C  G  L   + +    +   G+ P+    + ++  +C       A KL+D +V  G 
Sbjct: 280 SLCEEGHPLEALKVL--DRMEEYGYAPNRVAVSFLVKEFCKDGHVEEAYKLIDRVVARGG 337

Query: 345 FPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIK 404
                 Y+ L   LVK +K+ EA  LF  M+ N    +   C   +R     +       
Sbjct: 338 VSYGDCYSSLVVTLVKMKKIAEAEKLFRNMLANGVKPDGVACSLMIRELCLEERVLDGFN 397

Query: 405 FWKYMIENH--CSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTP-FALSKLKQ 461
               +  N   CS  ++  +LL+ GLC+     +A K A+ M +KGI++ P +A S +K 
Sbjct: 398 LCYEVDRNGYLCSIDADIYSLLLVGLCEHDHSVDAAKLARLMLKKGIRLKPHYAESIIKH 457

Query: 462 I 462
           +
Sbjct: 458 L 458


>gi|225456631|ref|XP_002266698.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74750
           [Vitis vinifera]
          Length = 875

 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 80/329 (24%), Positives = 144/329 (43%), Gaps = 11/329 (3%)

Query: 52  PTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLL 111
           P  E+ L      +      QVLK    HP  A+ FF W   Q   KH  + +  +V +L
Sbjct: 331 PAAEEALRNLNCLMDAYQANQVLKQIQDHP-VALGFFYWLKRQTGFKHDGHTYTTMVGIL 389

Query: 112 GKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDV 170
           G+   F A+   +  M ++    ++ T+  +  SY  A+ + +A++ FD M++ GC+ D 
Sbjct: 390 GRARQFGAINKLLAEMVRDGCQPNVVTYNRLIHSYGRANYLNEAVSVFDRMQEAGCQPDR 449

Query: 171 FALNSLLSAICRDG-KTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGE 229
               +L+    + G   +    + ++ +  + PD  TY++++    K   + +A K F E
Sbjct: 450 VTYCTLIDIHAKAGFLDVALHMYQKMQEAHLSPDTFTYSVIINCLGKAGHLTSAHKLFCE 509

Query: 230 MVIEVGWDPDNVPAYDSYLITL-LKGCDGIYETVNSLKRMMER-GCNPGMTFFKLAFEEC 287
           MV     D   VP   +Y I + L+     Y T   L R M+  G  P    + +  E  
Sbjct: 510 MV-----DQGCVPNLVTYNIMIALQAKARNYPTALELYRDMQNAGFQPDKVTYSIVMEVL 564

Query: 288 LTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPD 347
               +L  AE I+  M  R  + PD  +Y +++ L+        + +    M+  G  P+
Sbjct: 565 GHCGHLEEAEAIFTEM-KRKNWVPDEPVYGLLVDLWGKVGNVEKSWEWYQAMLNAGLCPN 623

Query: 348 IQTYNILFEFLVKGRKLWEASGLFNEMVK 376
           + T N L    ++  +L +A  L   M++
Sbjct: 624 VPTCNSLLSAFLRVHRLSDAYNLLQSMLR 652



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 75/172 (43%)

Query: 306 RIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLW 365
           + GF+ D H Y  M+ +   + + GA  KLL EMV +G  P++ TYN L     +   L 
Sbjct: 372 QTGFKHDGHTYTTMVGILGRARQFGAINKLLAEMVRDGCQPNVVTYNRLIHSYGRANYLN 431

Query: 366 EASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLV 425
           EA  +F+ M +     +       + ++  +    VA+  ++ M E H S  + T ++++
Sbjct: 432 EAVSVFDRMQEAGCQPDRVTYCTLIDIHAKAGFLDVALHMYQKMQEAHLSPDTFTYSVII 491

Query: 426 AGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLK 477
             L     L  A K    M ++G        + +  +  KAR      EL +
Sbjct: 492 NCLGKAGHLTSAHKLFCEMVDQGCVPNLVTYNIMIALQAKARNYPTALELYR 543


>gi|359485815|ref|XP_003633341.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Vitis vinifera]
          Length = 822

 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 101/381 (26%), Positives = 161/381 (42%), Gaps = 6/381 (1%)

Query: 100 SPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTF 158
           S Y+ N ++  L K  + +   +  K M    +  SL TF ++ +      +V++A    
Sbjct: 162 SLYSCNTLLIQLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELIL 221

Query: 159 DVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKE 217
             + QY    DVF   SL+   CR+     A+  F R+V     P++ TY+ L+ G   E
Sbjct: 222 SQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNE 281

Query: 218 RDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGM 277
             V  A     EM IE G +P  V  Y +  IT L   +   E +  + RM +RGC P +
Sbjct: 282 GRVDEALDMLEEM-IEKGIEP-TVYTY-TLPITALCAIEHEEEAIELVARMKKRGCRPNV 338

Query: 278 TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLD 337
             +            L  A  ++  M+ + G  P+T  YN +I+  C       A+K+  
Sbjct: 339 QTYTALISGLSRLGKLEVAIGLYHKML-KEGLVPNTVTYNALINELCVGGRFSTALKIFH 397

Query: 338 EMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSD 397
            M  +G+  + QTYN + + L  G  + +A  LF +M+K   +         +  Y+   
Sbjct: 398 WMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKG 457

Query: 398 DPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALS 457
           +   A +    M EN C     T N LV+G      L  A  Y + M E G+   P + +
Sbjct: 458 NVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYT 517

Query: 458 KLKQILIKARKEAVYEELLKK 478
            L     K  K  +   LLK+
Sbjct: 518 ALIDGHSKDGKVDIALSLLKR 538



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 80/333 (24%), Positives = 142/333 (42%), Gaps = 25/333 (7%)

Query: 125 KSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDG 184
           K +K+  V +  T+ ++ +   V  R   A+  F  ME +G   +    N ++  +C  G
Sbjct: 363 KMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGG 422

Query: 185 KTIDAW-QFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPA 243
               A   F +++     P   TY  L+ G+  + +V NA +   +++ E G +PD    
Sbjct: 423 DIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLL-DLMKENGCEPDEW-T 480

Query: 244 YDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAM 303
           Y+  L++       +       + M+E G NP      +++   + G +  G   I  ++
Sbjct: 481 YNE-LVSGFSKWGKLESASFYFQEMVECGLNPN----PVSYTALIDGHSKDGKVDIALSL 535

Query: 304 VGRI---GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVK 360
           + R+   G  P+   YN +I+     N    A K+ D+MV  G  P++ TY  L + L +
Sbjct: 536 LKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCR 595

Query: 361 GRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWK-----YMIENHCS 415
             +   A  +F++M K + + N         +Y  S   Y   +  K      M E  C 
Sbjct: 596 NGRTQFAFKIFHDMEKRKCLPN---------LYTYSSLIYGLCQEGKADEAERMSEIGCE 646

Query: 416 DLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448
              +T + LV+GLC      EA +  K M E+G
Sbjct: 647 PTLDTYSTLVSGLCRKGRFYEAEQLVKDMKERG 679



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 59/245 (24%), Positives = 113/245 (46%), Gaps = 11/245 (4%)

Query: 136 ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-R 194
            ++ ++   +    +V  A++    ME+ GC  +V + N++++ + ++ +  +A +   +
Sbjct: 514 VSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDK 573

Query: 195 VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG 254
           +V+  + P+  TY  L++G  +      A K F +M  E      N+  Y S +  L + 
Sbjct: 574 MVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDM--EKRKCLPNLYTYSSLIYGLCQ- 630

Query: 255 CDGIYETVNSLKRMMERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDT 313
            +G     +  +RM E GC P + T+  L    C  G+    AE +   M  R GF PD 
Sbjct: 631 -EG---KADEAERMSEIGCEPTLDTYSTLVSGLCRKGR-FYEAEQLVKDMKER-GFCPDR 684

Query: 314 HMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNE 373
            +Y  ++  +C + E   A+K+   +   G    +  Y  L   L K  ++ EA  LF+ 
Sbjct: 685 EIYYSLLIAHCKNLEVDHALKIFHSIEAKGFQLHLSIYRALICALCKAGQVEEAQALFDN 744

Query: 374 MVKNE 378
           M++ E
Sbjct: 745 MLEKE 749



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 63/274 (22%), Positives = 124/274 (45%), Gaps = 10/274 (3%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVM 161
           ++N V++ L K   F         M ++ +L ++ T+ ++        R + A   F  M
Sbjct: 550 SYNAVINGLSKENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDM 609

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVA 221
           E+  C  +++  +SL+  +C++GK  +A    R+ +   +P  DTY+ L+ G  ++    
Sbjct: 610 EKRKCLPNLYTYSSLIYGLCQEGKADEAE---RMSEIGCEPTLDTYSTLVSGLCRKGRFY 666

Query: 222 NAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFK 281
            A++   +M  E G+ PD    Y S LI   K  + +   +     +  +G    ++ ++
Sbjct: 667 EAEQLVKDMK-ERGFCPDR-EIYYSLLIAHCKNLE-VDHALKIFHSIEAKGFQLHLSIYR 723

Query: 282 -LAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMV 340
            L    C  GQ +  A+ ++  M+ +  +  D  ++ +++       E    MKLL  M 
Sbjct: 724 ALICALCKAGQ-VEEAQALFDNMLEK-EWNADEIVWTVLVDGLLKEGELDLCMKLLHIME 781

Query: 341 YNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
                P+IQTY IL   L +  K  E+  L +++
Sbjct: 782 SKNFTPNIQTYVILGRELSRIGKSIESEPLADKL 815


>gi|297734042|emb|CBI15289.3| unnamed protein product [Vitis vinifera]
          Length = 793

 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 80/329 (24%), Positives = 144/329 (43%), Gaps = 11/329 (3%)

Query: 52  PTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLL 111
           P  E+ L      +      QVLK    HP  A+ FF W   Q   KH  + +  +V +L
Sbjct: 340 PAAEEALRNLNCLMDAYQANQVLKQIQDHP-VALGFFYWLKRQTGFKHDGHTYTTMVGIL 398

Query: 112 GKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDV 170
           G+   F A+   +  M ++    ++ T+  +  SY  A+ + +A++ FD M++ GC+ D 
Sbjct: 399 GRARQFGAINKLLAEMVRDGCQPNVVTYNRLIHSYGRANYLNEAVSVFDRMQEAGCQPDR 458

Query: 171 FALNSLLSAICRDG-KTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGE 229
               +L+    + G   +    + ++ +  + PD  TY++++    K   + +A K F E
Sbjct: 459 VTYCTLIDIHAKAGFLDVALHMYQKMQEAHLSPDTFTYSVIINCLGKAGHLTSAHKLFCE 518

Query: 230 MVIEVGWDPDNVPAYDSYLITL-LKGCDGIYETVNSLKRMMER-GCNPGMTFFKLAFEEC 287
           MV     D   VP   +Y I + L+     Y T   L R M+  G  P    + +  E  
Sbjct: 519 MV-----DQGCVPNLVTYNIMIALQAKARNYPTALELYRDMQNAGFQPDKVTYSIVMEVL 573

Query: 288 LTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPD 347
               +L  AE I+  M  R  + PD  +Y +++ L+        + +    M+  G  P+
Sbjct: 574 GHCGHLEEAEAIFTEM-KRKNWVPDEPVYGLLVDLWGKVGNVEKSWEWYQAMLNAGLCPN 632

Query: 348 IQTYNILFEFLVKGRKLWEASGLFNEMVK 376
           + T N L    ++  +L +A  L   M++
Sbjct: 633 VPTCNSLLSAFLRVHRLSDAYNLLQSMLR 661



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 78/180 (43%), Gaps = 2/180 (1%)

Query: 298 FIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEF 357
           F W  +  + GF+ D H Y  M+ +   + + GA  KLL EMV +G  P++ TYN L   
Sbjct: 375 FYW--LKRQTGFKHDGHTYTTMVGILGRARQFGAINKLLAEMVRDGCQPNVVTYNRLIHS 432

Query: 358 LVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDL 417
             +   L EA  +F+ M +     +       + ++  +    VA+  ++ M E H S  
Sbjct: 433 YGRANYLNEAVSVFDRMQEAGCQPDRVTYCTLIDIHAKAGFLDVALHMYQKMQEAHLSPD 492

Query: 418 SETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLK 477
           + T ++++  L     L  A K    M ++G        + +  +  KAR      EL +
Sbjct: 493 TFTYSVIINCLGKAGHLTSAHKLFCEMVDQGCVPNLVTYNIMIALQAKARNYPTALELYR 552


>gi|115450929|ref|NP_001049065.1| Os03g0165100 [Oryza sativa Japonica Group]
 gi|113547536|dbj|BAF10979.1| Os03g0165100 [Oryza sativa Japonica Group]
          Length = 695

 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 88/351 (25%), Positives = 156/351 (44%), Gaps = 8/351 (2%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVM 161
            +N V+  L ++ ++D  W+  K M    V   + +F  +   +     +++A+  +  M
Sbjct: 167 TYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEM 226

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDG-RIKPDNDTYAILLEGWEKERDV 220
              G K D+ + + L+    R GK   A  +LR +    + PD   Y +++ G+ +   +
Sbjct: 227 RHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMVIGGFCRAGLM 286

Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGM-TF 279
           ++A +   EMV   G  PD V  Y++ L  L K    + +    L  M ERG  P + TF
Sbjct: 287 SDALRVRDEMV-GCGCLPD-VVTYNTLLNGLCKE-RRLLDAEGLLNEMRERGVPPDLCTF 343

Query: 280 FKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEM 339
             L    C+ G+ L  A  ++  M+ +   RPD   YN +I   C   +   A  L D+M
Sbjct: 344 TTLIHGYCIEGK-LDKALQLFDTMLNQ-RLRPDIVTYNTLIDGMCRQGDLDKANDLWDDM 401

Query: 340 VYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDP 399
                FP+  TY+IL +   +  ++ +A G  +EM+    + N     + ++ Y  S + 
Sbjct: 402 HSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNV 461

Query: 400 YVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQ 450
               KF + M+ N  S    T N L+ G      + +A K    M ++ +Q
Sbjct: 462 SKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQ 512



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 77/293 (26%), Positives = 116/293 (39%), Gaps = 53/293 (18%)

Query: 92  AYQL----NDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYV 146
           AY+L    N + + Y  N++V    K   FD +   I  M+K  V   + T   +  +  
Sbjct: 82  AYRLVFSSNSEVNTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARF 141

Query: 147 VADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDG-RIKPDND 205
            A   + A+   D M   G K  +   NS+L  +CR G    AW+  + +D   + PD  
Sbjct: 142 RAGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVR 201

Query: 206 TYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSL 265
           ++ IL+ G+ +  ++  A K +                                      
Sbjct: 202 SFTILIGGFCRVGEIEEALKIY-------------------------------------- 223

Query: 266 KRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGR----IGFRPDTHMYNMMIS 321
           K M  RG  P +  F      CL G   R  +        R     G  PD  +Y M+I 
Sbjct: 224 KEMRHRGIKPDLVSF-----SCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMVIG 278

Query: 322 LYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
            +C +     A+++ DEMV  G  PD+ TYN L   L K R+L +A GL NEM
Sbjct: 279 GFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEM 331



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 68/274 (24%), Positives = 124/274 (45%), Gaps = 17/274 (6%)

Query: 110 LLGKNCLFDAMWDAIKSMKKENV-----LSLATFASVFSSYVVADRVKDAITTFDVMEQY 164
           ++G  C    M DA++ ++ E V       + T+ ++ +      R+ DA    + M + 
Sbjct: 276 VIGGFCRAGLMSDALR-VRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRER 334

Query: 165 GCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDVANA 223
           G   D+    +L+   C +GK   A Q F  +++ R++PD  TY  L++G  ++ D+  A
Sbjct: 335 GVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKA 394

Query: 224 KKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD--GIYETVNSLKRMMERGCNPG-MTFF 280
              + +M        +  P + +Y I +   C+   + +    L  M+ +G  P  MT+ 
Sbjct: 395 NDLWDDM-----HSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYN 449

Query: 281 KLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMV 340
            +    C +G   +G +F+   MV ++   PD   YN +I  Y   ++   A KLL+ M 
Sbjct: 450 SIIKGYCRSGNVSKGQKFLQKMMVNKVS--PDLITYNTLIHGYIKEDKMHDAFKLLNMME 507

Query: 341 YNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
                PD+ TYN+L         + EA  +F +M
Sbjct: 508 KEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKM 541



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 64/281 (22%), Positives = 120/281 (42%), Gaps = 19/281 (6%)

Query: 109 DLLGKNCLFDAMWDAIKSMKKENVLS----------LATFASVFSSYVVADRVKDAITTF 158
           D++  N L + +    + +  E +L+          L TF ++   Y +  ++  A+  F
Sbjct: 304 DVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLF 363

Query: 159 DVMEQYGCKHDVFALNSLLSAICRDG---KTIDAWQFLRVVDGRIKPDNDTYAILLEGWE 215
           D M     + D+   N+L+  +CR G   K  D W  +   +  I P++ TY+IL++   
Sbjct: 364 DTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSRE--IFPNHVTYSILIDSHC 421

Query: 216 KERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNP 275
           ++  V +A     EM I  G  P N+  Y+S +    +  + + +    L++MM    +P
Sbjct: 422 EKGQVEDAFGFLDEM-INKGILP-NIMTYNSIIKGYCRSGN-VSKGQKFLQKMMVNKVSP 478

Query: 276 GMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKL 335
            +  +       +    +  A F    M+ +   +PD   YNM+I+ +        A  +
Sbjct: 479 DLITYNTLIHGYIKEDKMHDA-FKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWI 537

Query: 336 LDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK 376
            ++M   G  PD  TY  +    V      EA  L +EM++
Sbjct: 538 FEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQ 578


>gi|15229026|ref|NP_190450.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75183419|sp|Q9M302.1|PP270_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g48810
 gi|7576219|emb|CAB87909.1| putative protein [Arabidopsis thaliana]
 gi|332644937|gb|AEE78458.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 659

 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 91/353 (25%), Positives = 155/353 (43%), Gaps = 24/353 (6%)

Query: 104 WNLVVD-LLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVM 161
           +N V+D LLG+N     ++   + MK++    ++ T+  +  +    ++V  A      M
Sbjct: 149 YNHVLDTLLGEN-RIQMIYMVYRDMKRDGFEPNVFTYNVLLKALCKNNKVDGAKKLLVEM 207

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVA 221
              GC  D  +  +++S++C  G   +     R +  R +P    Y  L+ G  KE D  
Sbjct: 208 SNKGCCPDAVSYTTVISSMCEVGLVKEG----RELAERFEPVVSVYNALINGLCKEHDYK 263

Query: 222 NAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFK 281
            A +   EMV E G  P NV +Y S LI +L     I    + L +M++RGC+P +    
Sbjct: 264 GAFELMREMV-EKGISP-NVISY-STLINVLCNSGQIELAFSFLTQMLKRGCHPNIYTLS 320

Query: 282 LAFEECLTGQNLRGAEF----IWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLD 337
              + C     LRG  F    +W  M+   G +P+   YN ++  +C       A+ +  
Sbjct: 321 SLVKGCF----LRGTTFDALDLWNQMIRGFGLQPNVVAYNTLVQGFCSHGNIVKAVSVFS 376

Query: 338 EMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKN---ENVLNHENCRAAVRVYM 394
            M   G  P+I+TY  L     K   L  A  ++N+M+ +    NV+ + N   A+  + 
Sbjct: 377 HMEEIGCSPNIRTYGSLINGFAKRGSLDGAVYIWNKMLTSGCCPNVVVYTNMVEALCRHS 436

Query: 395 DSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEK 447
              +    I+    M + +C+    T N  + GLCD   L  A K  + M ++
Sbjct: 437 KFKEAESLIEI---MSKENCAPSVPTFNAFIKGLCDAGRLDWAEKVFRQMEQQ 486



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 78/328 (23%), Positives = 136/328 (41%), Gaps = 34/328 (10%)

Query: 117 FDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSL 176
           F+ M + ++     NV+S +T  +V  +   + +++ A +    M + GC  +++ L+SL
Sbjct: 266 FELMREMVEKGISPNVISYSTLINVLCN---SGQIELAFSFLTQMLKRGCHPNIYTLSSL 322

Query: 177 LSAICRDGKTIDA---W-QFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVI 232
           +      G T DA   W Q +R     ++P+   Y  L++G+    ++  A   F  M  
Sbjct: 323 VKGCFLRGTTFDALDLWNQMIRGFG--LQPNVVAYNTLVQGFCSHGNIVKAVSVFSHME- 379

Query: 233 EVGWDPDNVPAYDSYLITLLK--GCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTG 290
           E+G  P N+  Y S +    K    DG     N   +M+  GC P +  +    E     
Sbjct: 380 EIGCSP-NIRTYGSLINGFAKRGSLDGAVYIWN---KMLTSGCCPNVVVYTNMVEALCRH 435

Query: 291 QNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEM-VYNGAFPDIQ 349
              + AE +   M  +    P    +N  I   C +     A K+  +M   +   P+I 
Sbjct: 436 SKFKEAESLIEIM-SKENCAPSVPTFNAFIKGLCDAGRLDWAEKVFRQMEQQHRCPPNIV 494

Query: 350 TYNILFEFLVKGRKLWEASGLFNEMV--------KNENVLNHENCRAAVRVYMDSDDPYV 401
           TYN L + L K  ++ EA GL  E+            N L H +C A +        P +
Sbjct: 495 TYNELLDGLAKANRIEEAYGLTREIFMRGVEWSSSTYNTLLHGSCNAGL--------PGI 546

Query: 402 AIKFWKYMIENHCSDLSETGNLLVAGLC 429
           A++    M+ +  S    T N+++   C
Sbjct: 547 ALQLVGKMMVDGKSPDEITMNMIILAYC 574



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 93/216 (43%), Gaps = 10/216 (4%)

Query: 149 DRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDG--RIKPDNDT 206
            + K+A +  ++M +  C   V   N+ +  +C  G+   A +  R ++   R  P+  T
Sbjct: 436 SKFKEAESLIEIMSKENCAPSVPTFNAFIKGLCDAGRLDWAEKVFRQMEQQHRCPPNIVT 495

Query: 207 YAILLEGWEKERDVANAKKTFGEMVIE-VGWDPDNVPAYDSYLI-TLLKGCDGIYETVNS 264
           Y  LL+G  K   +  A     E+ +  V W       Y++ L  +   G  GI   +  
Sbjct: 496 YNELLDGLAKANRIEEAYGLTREIFMRGVEWSSS---TYNTLLHGSCNAGLPGI--ALQL 550

Query: 265 LKRMMERGCNPG-MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLY 323
           + +MM  G +P  +T   +    C  G+  R A+ +     GR  +RPD   Y  +I   
Sbjct: 551 VGKMMVDGKSPDEITMNMIILAYCKQGKAERAAQMLDLVSCGRRKWRPDVISYTNVIWGL 610

Query: 324 CYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLV 359
           C SN     + LL+ M+  G  P I T+++L    +
Sbjct: 611 CRSNCREDGVILLERMISAGIVPSIATWSVLINCFI 646



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 49/205 (23%), Positives = 84/205 (40%), Gaps = 18/205 (8%)

Query: 261 TVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMI 320
            V    R+ E GC+P +  +    +  L    ++    ++  M  R GF P+   YN+++
Sbjct: 130 AVEMFYRIKEFGCDPSVKIYNHVLDTLLGENRIQMIYMVYRDM-KRDGFEPNVFTYNVLL 188

Query: 321 SLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVK------GRKLWEASGLFNEM 374
              C +N+   A KLL EM   G  PD  +Y  +   + +      GR+L E    F  +
Sbjct: 189 KALCKNNKVDGAKKLLVEMSNKGCCPDAVSYTTVISSMCEVGLVKEGRELAER---FEPV 245

Query: 375 VKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHML 434
           V   N L +  C+          D   A +  + M+E   S    + + L+  LC+   +
Sbjct: 246 VSVYNALINGLCK--------EHDYKGAFELMREMVEKGISPNVISYSTLINVLCNSGQI 297

Query: 435 PEAVKYAKGMAEKGIQVTPFALSKL 459
             A  +   M ++G     + LS L
Sbjct: 298 ELAFSFLTQMLKRGCHPNIYTLSSL 322



 Score = 45.1 bits (105), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 50/249 (20%), Positives = 108/249 (43%), Gaps = 15/249 (6%)

Query: 129 KENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTID 188
           + NV++  T    F S+     +  A++ F  ME+ GC  ++    SL++   + G ++D
Sbjct: 349 QPNVVAYNTLVQGFCSH---GNIVKAVSVFSHMEEIGCSPNIRTYGSLINGFAKRG-SLD 404

Query: 189 AWQFL--RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDS 246
              ++  +++     P+   Y  ++E   +      A+    E++ +    P +VP +++
Sbjct: 405 GAVYIWNKMLTSGCCPNVVVYTNMVEALCRHSKFKEAESLI-EIMSKENCAP-SVPTFNA 462

Query: 247 YLITLLKGCD-GIYETVNSLKRMMERG--CNPGMTFFKLAFEECLTGQNLRGAEFIWGAM 303
           ++  L   CD G  +    + R ME+   C P +  +    +       +  A  +   +
Sbjct: 463 FIKGL---CDAGRLDWAEKVFRQMEQQHRCPPNIVTYNELLDGLAKANRIEEAYGLTREI 519

Query: 304 VGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRK 363
             R G    +  YN ++   C +   G A++L+ +M+ +G  PD  T N++     K  K
Sbjct: 520 FMR-GVEWSSSTYNTLLHGSCNAGLPGIALQLVGKMMVDGKSPDEITMNMIILAYCKQGK 578

Query: 364 LWEASGLFN 372
              A+ + +
Sbjct: 579 AERAAQMLD 587



 Score = 40.0 bits (92), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 64/165 (38%), Gaps = 9/165 (5%)

Query: 304 VGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRK 363
           +   G  P   +YN ++      N       +  +M  +G  P++ TYN+L + L K  K
Sbjct: 137 IKEFGCDPSVKIYNHVLDTLLGENRIQMIYMVYRDMKRDGFEPNVFTYNVLLKALCKNNK 196

Query: 364 LWEASGLFNEMVKNENVLNHENCRAAVR--VYMDSDDPYVAIKFWKYMIENHCSDLSETG 421
           +  A  L  EM       N   C  AV     + S      +K  + + E     +    
Sbjct: 197 VDGAKKLLVEMS------NKGCCPDAVSYTTVISSMCEVGLVKEGRELAERF-EPVVSVY 249

Query: 422 NLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKA 466
           N L+ GLC  H    A +  + M EKGI     + S L  +L  +
Sbjct: 250 NALINGLCKEHDYKGAFELMREMVEKGISPNVISYSTLINVLCNS 294


>gi|449463537|ref|XP_004149490.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Cucumis sativus]
          Length = 786

 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 110/459 (23%), Positives = 183/459 (39%), Gaps = 62/459 (13%)

Query: 70  VEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIK---- 125
           V ++L      P  A+KFF+W+  Q+  +H+  ++ ++V L+ +  ++    D +K    
Sbjct: 132 VSKILLGLREDPKLALKFFKWAGSQVGFRHTTESYCIIVHLVFRARMYTDAHDTVKEVIM 191

Query: 126 ------------------SMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCK 167
                             S +   V     F  +FS +V    +++A   F  M  +   
Sbjct: 192 NSRMDMGFPVCNIFDMLWSTRNICVSGSGVFDVLFSVFVELGLLEEANECFSRMRNFRTL 251

Query: 168 HDVFALNSLLSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYAILLEGWEKERDVANAKKT 226
               + N LL  + + G      +F   ++   I P   TY ++++   KE D+ N+++ 
Sbjct: 252 PKARSCNFLLHRLSKSGNGQLVRKFFNDMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRL 311

Query: 227 FGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMT-------- 278
           F +M  E+G  PD V  Y+S LI        + E  +    M + GC P +         
Sbjct: 312 FVQMR-EMGLSPD-VVTYNS-LIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINC 368

Query: 279 ---FFKL--AFE------------ECLTGQNLRGAEFIWGAMVG---------RIGFRPD 312
              F K+  AFE              +T   L  A    G M G         R G  P+
Sbjct: 369 YCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLFVDMRRTGLLPN 428

Query: 313 THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFN 372
              Y  +I   C +     A KLL++M+  G   +I TY  L + L K  ++ EA  +F 
Sbjct: 429 EFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFR 488

Query: 373 EMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIE-NHCSDLSETGNLLVAGLCDM 431
            M+K+    N +   A V  Y+ ++    A+K  K M E N   DL   G+ ++ G C  
Sbjct: 489 SMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGS-IIWGHCSQ 547

Query: 432 HMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEA 470
             L E     + M  +GI   P   + +     KA K +
Sbjct: 548 RKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSS 586



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 82/378 (21%), Positives = 153/378 (40%), Gaps = 6/378 (1%)

Query: 75  KFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL- 133
           + S S  G  V+ F           S + +N+++D L K    +        M++  +  
Sbjct: 263 RLSKSGNGQLVRKFFNDMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSP 322

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-F 192
            + T+ S+   Y     +++  + F+ M+  GC  D+   N L++  C+  K   A++ F
Sbjct: 323 DVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYF 382

Query: 193 LRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
             + +  +KP+  TY+ L++ + KE  +  A K F +M    G  P+    Y S +    
Sbjct: 383 SEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLFVDMR-RTGLLPNEF-TYTSLIDANC 440

Query: 253 KGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD 312
           K    + E    L  M++ G    +  +    +       +  AE ++ +M+ + G  P+
Sbjct: 441 KA-GNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSML-KDGISPN 498

Query: 313 THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFN 372
             +Y  ++  Y  +     AMK+L +M      PD+  Y  +       RKL E   +  
Sbjct: 499 QQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRKLEETKLILE 558

Query: 373 EMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMH 432
           EM       N       +  Y  +     A+ F++ M +        T  +L+ GLC   
Sbjct: 559 EMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCKAG 618

Query: 433 MLPEAVKYAKGMAEKGIQ 450
           ++  AV Y   M   G+Q
Sbjct: 619 IVELAVDYFCRMLSLGLQ 636



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 82/353 (23%), Positives = 143/353 (40%), Gaps = 45/353 (12%)

Query: 98  KHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAIT 156
           K +   ++ ++D   K  +          M++  +L +  T+ S+  +   A  + +A  
Sbjct: 391 KPNVVTYSTLIDAFCKEGMMQGAIKLFVDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWK 450

Query: 157 TFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV--DGRIKPDNDTYAILLEGW 214
             + M Q G K ++    +LL  +C+ G+ I+A +  R +  DG I P+   Y  L+ G+
Sbjct: 451 LLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDG-ISPNQQVYTALVHGY 509

Query: 215 EKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDG--IYETVNSLKRMMERG 272
            K   + +A K   +M  E    PD +     Y   +   C    + ET   L+ M  RG
Sbjct: 510 IKAERMEDAMKILKQMT-ECNIKPDLIL----YGSIIWGHCSQRKLEETKLILEEMKSRG 564

Query: 273 --CNPGMT------FFKLA--------FEE-------------CLTGQNLRGAEFIWGAM 303
              NP ++      +FK          F+E             C+    L  A  +  A+
Sbjct: 565 ISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCKAGIVELAV 624

Query: 304 -----VGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFL 358
                +  +G +P+  +Y  +I   C +N   +A KL DEM   G  PDI  +  L +  
Sbjct: 625 DYFCRMLSLGLQPNVAVYTSLIDGLCKNNCIESAKKLFDEMQCRGMTPDITAFTALIDGN 684

Query: 359 VKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIE 411
           +K   L EA  L + M +     +     + V  +    + + A KF+  MIE
Sbjct: 685 LKHGNLQEALVLISRMTELAIEFDLHVYTSLVSGFSQCGELHQARKFFNEMIE 737



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 66/263 (25%), Positives = 114/263 (43%), Gaps = 11/263 (4%)

Query: 118 DAMWDAIKSMKKENVLS----LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFAL 173
           + M DA+K +K+    +    L  + S+   +    ++++     + M+  G   +    
Sbjct: 513 ERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGISANPVIS 572

Query: 174 NSLLSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVI 232
            +++ A  + GK+ DA  F + + D  ++    TY +L++G  K   V  A   F  M +
Sbjct: 573 TTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCKAGIVELAVDYFCRM-L 631

Query: 233 EVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQN 292
            +G  P NV  Y S +  L K  + I         M  RG  P +T F    +  L   N
Sbjct: 632 SLGLQP-NVAVYTSLIDGLCKN-NCIESAKKLFDEMQCRGMTPDITAFTALIDGNLKHGN 689

Query: 293 LRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFP-DIQTY 351
           L+ A  +   M   +    D H+Y  ++S +    E   A K  +EM+  G  P ++   
Sbjct: 690 LQEALVLISRMT-ELAIEFDLHVYTSLVSGFSQCGELHQARKFFNEMIEKGILPEEVLCI 748

Query: 352 NILFEFLVKGRKLWEASGLFNEM 374
            +L E+  +G +L EA  L NEM
Sbjct: 749 CLLREYYKRG-QLDEAIELKNEM 770


>gi|15236834|ref|NP_194398.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|334186944|ref|NP_001190849.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213515|sp|Q9SZ10.1|PP338_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g26680, mitochondrial; Flags: Precursor
 gi|4455191|emb|CAB36514.1| putative protein [Arabidopsis thaliana]
 gi|7269520|emb|CAB79523.1| putative protein [Arabidopsis thaliana]
 gi|332659836|gb|AEE85236.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332659837|gb|AEE85237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 521

 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 93/417 (22%), Positives = 175/417 (41%), Gaps = 28/417 (6%)

Query: 84  AVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDA-------------------MWDAI 124
           +++FF W+  +    HS     +V+  L KN  F +                   ++DA+
Sbjct: 98  SLEFFNWAKTRNPGSHSLETHAIVLHTLTKNRKFKSAESILRDVLVNGGVDLPAKVFDAL 157

Query: 125 KSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDG 184
               +E   +   F S+F ++    + ++A  TF  M+ YG    V + N+ +S++   G
Sbjct: 158 LYSYRECDSTPRVFDSLFKTFAHLKKFRNATDTFMQMKDYGFLPTVESCNAYMSSLLGQG 217

Query: 185 KTIDAWQFLRVVDG-RIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPA 243
           +   A +F R +   +I P+  T  +++ G+ +   +    +   +M   +G+   +V  
Sbjct: 218 RVDIALRFYREMRRCKISPNPYTLNMVMSGYCRSGKLDKGIELLQDME-RLGFRATDV-- 274

Query: 244 YDSYLITLLKGCD-GIYETVNSLKRMMER-GCNPGMTFFKLAFEECLTGQNLRGAEFIWG 301
             SY   +   C+ G+  +   LK MM + G  P +  F            L+ A  ++G
Sbjct: 275 --SYNTLIAGHCEKGLLSSALKLKNMMGKSGLQPNVVTFNTLIHGFCRAMKLQEASKVFG 332

Query: 302 AMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKG 361
            M   +   P+T  YN +I+ Y    +   A +  ++MV NG   DI TYN L   L K 
Sbjct: 333 EMKA-VNVAPNTVTYNTLINGYSQQGDHEMAFRFYEDMVCNGIQRDILTYNALIFGLCKQ 391

Query: 362 RKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETG 421
            K  +A+    E+ K   V N     A +       +     + +K MI + C    +T 
Sbjct: 392 AKTRKAAQFVKELDKENLVPNSSTFSALIMGQCVRKNADRGFELYKSMIRSGCHPNEQTF 451

Query: 422 NLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKK 478
           N+LV+  C       A +  + M  + I +    + ++   L    K+ + ++LL++
Sbjct: 452 NMLVSAFCRNEDFDGASQVLREMVRRSIPLDSRTVHQVCNGLKHQGKDQLVKKLLQE 508


>gi|302775252|ref|XP_002971043.1| hypothetical protein SELMODRAFT_94769 [Selaginella moellendorffii]
 gi|300161025|gb|EFJ27641.1| hypothetical protein SELMODRAFT_94769 [Selaginella moellendorffii]
          Length = 457

 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 90/353 (25%), Positives = 149/353 (42%), Gaps = 13/353 (3%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           TF ++ + +    R  D     + M   G + +V + N LL  +C+  +  +A + +R +
Sbjct: 12  TFNALVNGFSKQGRPGDCERLLETMAARGIQPNVVSYNGLLEGLCKLERWHEAEELVRDM 71

Query: 197 ---DGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLK 253
               GR  PD  TY+ LL G+ K   V  +++   E VI  G  PD +  Y   + +L K
Sbjct: 72  ISRGGRSTPDLVTYSTLLSGYCKAGKVEESRELLKE-VISRGLRPDAL-MYTKVMASLCK 129

Query: 254 GCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDT 313
               + E +  L+ M+  GC P +  F      C   +NL  A+ +   M    G + D 
Sbjct: 130 SAR-LGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQTMAAS-GVKADV 187

Query: 314 HMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNE 373
             YN ++   C +     A +LL+ M  +G  PD+  Y+     L K  K+  A  +  +
Sbjct: 188 VTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLNAHQVLEQ 247

Query: 374 MVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETG-NLLVAGLCDMH 432
           M  +++  N       +     S     A++  + M  +    L+  G + +V GLC + 
Sbjct: 248 MRDSDHDPNVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLG 307

Query: 433 MLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARK-----EAVYEELLKKCK 480
              EA    + MA  G +      S L   L KA K     EAV E  ++ CK
Sbjct: 308 RTQEARSVMEAMARAGCRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCK 360



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 79/341 (23%), Positives = 135/341 (39%), Gaps = 44/341 (12%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           +L TF ++ S       ++ A +    M   G K DV   N+L+  +C+ G+  +A Q L
Sbjct: 151 TLITFNTLISGCCREKNLEMADSLLQTMAASGVKADVVTYNTLMDGLCKAGRLQEAEQLL 210

Query: 194 -RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
            R+      PD   Y+  + G  K   V NA +   E + +   DP NV  Y++ L  L 
Sbjct: 211 ERMKASGCAPDVVAYSSFVYGLCKSGKVLNAHQVL-EQMRDSDHDP-NVVTYNTILDGLC 268

Query: 253 KGCDGIYETVNSLKRMMER-----GCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRI 307
           K        +++   MME+     GC   +  +    +        + A  +  AM  R 
Sbjct: 269 KS-----GKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEARSVMEAMA-RA 322

Query: 308 GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEA 367
           G RPD   Y+ +++  C + +   A++ + EM   G  P+  TY  L   L    +L EA
Sbjct: 323 GCRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCSLVHGLCSCGRLAEA 382

Query: 368 SGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAG 427
             +  EM       +H  C  +V  Y                            N L+ G
Sbjct: 383 ERMVEEMSSGGGGGDH--CPPSVSTY----------------------------NALIGG 412

Query: 428 LCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARK 468
           LC    + +A+K+ + M  +G      + S + + L ++ +
Sbjct: 413 LCKAGRIDDALKFFQRMRSQGCDPDGVSYSTIVEGLARSGR 453



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 65/274 (23%), Positives = 106/274 (38%), Gaps = 44/274 (16%)

Query: 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL- 193
           + T+ ++      A R+++A    + M+  GC  DV A +S +  +C+ GK ++A Q L 
Sbjct: 187 VVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLNAHQVLE 246

Query: 194 RVVDGRIKPDNDTYAILLEGWEKERDVANA------------------------------ 223
           ++ D    P+  TY  +L+G  K   +  A                              
Sbjct: 247 QMRDSDHDPNVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKL 306

Query: 224 -----KKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNP-GM 277
                 ++  E +   G  PD V  Y S +  L K    I E V +++ M   GC P  +
Sbjct: 307 GRTQEARSVMEAMARAGCRPD-VVTYSSLVNGLCKA-GKIEEAVEAVREMAMEGCKPNAV 364

Query: 278 TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFR----PDTHMYNMMISLYCYSNETGAAM 333
           T+  L    C  G+ L  AE +   M    G      P    YN +I   C +     A+
Sbjct: 365 TYCSLVHGLCSCGR-LAEAERMVEEMSSGGGGGDHCPPSVSTYNALIGGLCKAGRIDDAL 423

Query: 334 KLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEA 367
           K    M   G  PD  +Y+ + E L +  +  +A
Sbjct: 424 KFFQRMRSQGCDPDGVSYSTIVEGLARSGRALQA 457



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 49/192 (25%), Positives = 93/192 (48%), Gaps = 12/192 (6%)

Query: 94  QLNDK-HSP--YAWNLVVDLLGKNCLFDAMWDAIKSMKKENV--LSLATFASVFSSYVVA 148
           Q+ D  H P    +N ++D L K+   D   + ++ M   +   L++  +++V       
Sbjct: 247 QMRDSDHDPNVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKL 306

Query: 149 DRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR--VVDGRIKPDNDT 206
            R ++A +  + M + GC+ DV   +SL++ +C+ GK  +A + +R   ++G  KP+  T
Sbjct: 307 GRTQEARSVMEAMARAGCRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEG-CKPNAVT 365

Query: 207 YAILLEGWEKERDVANAKKTFGEMVIEVGWD---PDNVPAYDSYLITLLKGCDGIYETVN 263
           Y  L+ G      +A A++   EM    G     P +V  Y++ +  L K    I + + 
Sbjct: 366 YCSLVHGLCSCGRLAEAERMVEEMSSGGGGGDHCPPSVSTYNALIGGLCKA-GRIDDALK 424

Query: 264 SLKRMMERGCNP 275
             +RM  +GC+P
Sbjct: 425 FFQRMRSQGCDP 436


>gi|125542792|gb|EAY88931.1| hypothetical protein OsI_10416 [Oryza sativa Indica Group]
          Length = 796

 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 86/351 (24%), Positives = 138/351 (39%), Gaps = 43/351 (12%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RV 195
           TF  +  ++     + DA+ T   M+ +G   D    N+LL+A CR G   +A   L R+
Sbjct: 210 TFNLLVHTHCSKGTLADALATLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEARALLARM 269

Query: 196 VDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPD----NVPAY------- 244
               I P   TY  L+  + +   +  A K   E +   G++PD    NV A        
Sbjct: 270 KRDGIAPTQPTYNTLVSAFARLGWIKQATKVV-ESMTAYGFEPDLRTYNVLAMGLCQAGK 328

Query: 245 --DSYLI------------------TLLKGC---DGIYETVNSLKRMMERGCNPGMTFFK 281
             +++ +                  TL+  C       + +  L+ M ++G  P +    
Sbjct: 329 VDEAFRLKDEMERLGTALPDVVTYNTLVDACFKWRCSSDALRLLEEMRDKGVKPTLVTHN 388

Query: 282 LAFEE-CLTGQNLRGAEFIWGAM--VGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDE 338
           +  +  C  G+     E   G +  +   G  PD   YN +I  YC +     A  L+DE
Sbjct: 389 IVVKSLCKEGK----LEEALGKLEKIAEEGLAPDVITYNTLIDAYCKAGNVAKAFTLMDE 444

Query: 339 MVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDD 398
           MV  G   D  T N +   L K ++  +A  L +   +   V +  +    +  Y    +
Sbjct: 445 MVGKGLKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQRGFVPDEVSYGTVMAAYFKEYN 504

Query: 399 PYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
           P  A++ W  MIE        T N L+ GLC M  L EA+       EKG+
Sbjct: 505 PEPALRLWDQMIERKLIPSISTYNTLIKGLCRMERLKEAIDKLNEFVEKGL 555



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 92/398 (23%), Positives = 157/398 (39%), Gaps = 47/398 (11%)

Query: 110 LLGKNCLFDAMWDA---IKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVMEQYG 165
           LL  +C    + +A   +  MK++ +  +  T+ ++ S++     +K A    + M  YG
Sbjct: 249 LLNAHCRKGMLGEARALLARMKRDGIAPTQPTYNTLVSAFARLGWIKQATKVVESMTAYG 308

Query: 166 CKHDVFALNSLLSAICRDGKTIDAWQFLRVVD--GRIKPDNDTYAILLEGWEKERDVANA 223
            + D+   N L   +C+ GK  +A++    ++  G   PD  TY  L++   K R  ++A
Sbjct: 309 FEPDLRTYNVLAMGLCQAGKVDEAFRLKDEMERLGTALPDVVTYNTLVDACFKWRCSSDA 368

Query: 224 KKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD--GIYETVNSLKRMMERGCNPGMTFFK 281
            +   EM      D    P   ++ I +   C    + E +  L+++ E G  P +  + 
Sbjct: 369 LRLLEEM-----RDKGVKPTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEGLAPDVITYN 423

Query: 282 LAFEECLTGQNLRGAEFIWGAMVGR----------------------------------I 307
              +      N+  A  +   MVG+                                   
Sbjct: 424 TLIDAYCKAGNVAKAFTLMDEMVGKGLKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQR 483

Query: 308 GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEA 367
           GF PD   Y  +++ Y        A++L D+M+     P I TYN L + L +  +L EA
Sbjct: 484 GFVPDEVSYGTVMAAYFKEYNPEPALRLWDQMIERKLIPSISTYNTLIKGLCRMERLKEA 543

Query: 368 SGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAG 427
               NE V+   V +       +  Y    D   A +F   M+EN       T N L+ G
Sbjct: 544 IDKLNEFVEKGLVPDETTYNIIIHAYCKEGDLENAFRFHNKMVENSFKPDVVTCNTLMNG 603

Query: 428 LCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIK 465
           LC    L +A+K  +   EKG +V     + L Q + K
Sbjct: 604 LCLHGKLDKALKLFESWVEKGKKVDVITYNTLIQSMCK 641



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 90/412 (21%), Positives = 159/412 (38%), Gaps = 54/412 (13%)

Query: 105 NLVVDLLGKNCLFDAMWDAIKSMKKENVLS-LATFASVFSSYVVADRVKDAITTFDVMEQ 163
           N+VV  L K    +     ++ + +E +   + T+ ++  +Y  A  V  A T  D M  
Sbjct: 388 NIVVKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNTLIDAYCKAGNVAKAFTLMDEMVG 447

Query: 164 YGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVAN 222
            G K D F LN++L  +C+  +  DA + L     R   PD  +Y  ++  + KE +   
Sbjct: 448 KGLKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQRGFVPDEVSYGTVMAAYFKEYNPEP 507

Query: 223 AKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC---DGIYETVNSLKRMMERGCNPGMTF 279
           A + + +M+     +   +P+  +Y  TL+KG    + + E ++ L   +E+G  P  T 
Sbjct: 508 ALRLWDQMI-----ERKLIPSISTY-NTLIKGLCRMERLKEAIDKLNEFVEKGLVPDETT 561

Query: 280 FKLAFEECLTGQNLRGAEFIWGAMV---------------------GRI----------- 307
           + +         +L  A      MV                     G++           
Sbjct: 562 YNIIIHAYCKEGDLENAFRFHNKMVENSFKPDVVTCNTLMNGLCLHGKLDKALKLFESWV 621

Query: 308 --GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLW 365
             G + D   YN +I   C   +   A+   D+M   G  PD  TYN++   L +  +  
Sbjct: 622 EKGKKVDVITYNTLIQSMCKVGDVDTALHFFDDMEVKGLQPDAFTYNVVLSALSEAGRSE 681

Query: 366 EASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNL-- 423
           EA  + +++  +  +     C        D  D    +K  +   E   S+ ++   L  
Sbjct: 682 EAHNMLHKLADSGKLSQSFACPLLKPSSADEAD----VKEHEGKPEAESSEKAQDNALET 737

Query: 424 ---LVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVY 472
               + GLC    L EA      M +KG+ V       L + LIK +K   +
Sbjct: 738 YMERLNGLCTGGQLKEAKAVLDEMMQKGMPVDCSTYITLMEGLIKRQKRQTH 789


>gi|357491947|ref|XP_003616261.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355517596|gb|AES99219.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 811

 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 74/251 (29%), Positives = 117/251 (46%), Gaps = 13/251 (5%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           T++++ +      RV++A   FD M + G   +     +L+   C+ GK   A +   ++
Sbjct: 298 TYSALINGLCKESRVEEANGLFDEMCEMGLVPNGVTFTTLIDGQCKHGKIDLALRNFEIM 357

Query: 197 DGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
             R I+PD  TY  L+ G  ++ D+  A+K   EM I  G+ PD +        TL+ GC
Sbjct: 358 KDRGIRPDLITYNALINGLCRDGDLKEARKLLNEM-IGNGFKPDKIT-----FTTLMDGC 411

Query: 256 --DGIYETVNSLK-RMMERGCN-PGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRP 311
             DG  ++   +K RM+E G     + F  L    C  G+ +R AE +   M+   G +P
Sbjct: 412 CKDGDMDSALEIKDRMVEEGIELDDVAFTALISGLCRDGR-VRDAERMLKDMLS-AGHKP 469

Query: 312 DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLF 371
           D   Y M+I  +C   +     KLL EM  +G  P + TYN L     K  ++  A  L 
Sbjct: 470 DDPTYTMVIDCFCKKGDVKMGAKLLKEMQRDGRVPGVVTYNALMNGFCKQGQMKNAKMLL 529

Query: 372 NEMVKNENVLN 382
           + M+  E V N
Sbjct: 530 HAMLNMEVVPN 540



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 107/224 (47%), Gaps = 9/224 (4%)

Query: 136 ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRV 195
            TF ++        ++  A+  F++M+  G + D+   N+L++ +CRDG   +A + L  
Sbjct: 332 VTFTTLIDGQCKHGKIDLALRNFEIMKDRGIRPDLITYNALINGLCRDGDLKEARKLLNE 391

Query: 196 VDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG 254
           + G   KPD  T+  L++G  K+ D+ +A +    MV E G + D+V A+ + +  L + 
Sbjct: 392 MIGNGFKPDKITFTTLMDGCCKDGDMDSALEIKDRMV-EEGIELDDV-AFTALISGLCR- 448

Query: 255 CDG-IYETVNSLKRMMERGCNPGMTFFKLAFE-ECLTGQNLRGAEFIWGAMVGRIGFRPD 312
            DG + +    LK M+  G  P    + +  +  C  G    GA+ +    + R G  P 
Sbjct: 449 -DGRVRDAERMLKDMLSAGHKPDDPTYTMVIDCFCKKGDVKMGAKLL--KEMQRDGRVPG 505

Query: 313 THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFE 356
              YN +++ +C   +   A  LL  M+     P+  T+NIL +
Sbjct: 506 VVTYNALMNGFCKQGQMKNAKMLLHAMLNMEVVPNDITFNILLD 549



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 73/284 (25%), Positives = 118/284 (41%), Gaps = 49/284 (17%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICR-DGKTIDAWQF 192
           S+  F ++  +Y  ++ ++DAI    ++++      V   + LL  + + + +    W+F
Sbjct: 154 SVLVFDALIIAYTDSEFIEDAIQCLRLVKKNNFSIPVCGCDYLLRRVMKLNQQPGHCWEF 213

Query: 193 -LRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMV-------------------- 231
            L V+D    P+   + IL+ G+ K  DV NA+  F E+                     
Sbjct: 214 YLEVLDYGYPPNVYLFNILMHGFCKIGDVMNARMVFDEISRRGLRPSVVSFNTLISGYCR 273

Query: 232 ---IEVGW-----------DPDNVPAYDSYLITLLKGCDGIYETVNSL-KRMMERGCNP- 275
              +E G+            PD V  Y + +  L K  +   E  N L   M E G  P 
Sbjct: 274 SKNVEEGFVLKSVMESERISPD-VFTYSALINGLCK--ESRVEEANGLFDEMCEMGLVPN 330

Query: 276 GMTFFKLAFEECLTGQ---NLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAA 332
           G+TF  L   +C  G+    LR  E +        G RPD   YN +I+  C   +   A
Sbjct: 331 GVTFTTLIDGQCKHGKIDLALRNFEIMKDR-----GIRPDLITYNALINGLCRDGDLKEA 385

Query: 333 MKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK 376
            KLL+EM+ NG  PD  T+  L +   K   +  A  + + MV+
Sbjct: 386 RKLLNEMIGNGFKPDKITFTTLMDGCCKDGDMDSALEIKDRMVE 429



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 83/217 (38%), Gaps = 12/217 (5%)

Query: 254 GCDGIYETVNSLKR-----------MMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGA 302
           GCD +   V  L +           +++ G  P +  F +         ++  A  ++  
Sbjct: 192 GCDYLLRRVMKLNQQPGHCWEFYLEVLDYGYPPNVYLFNILMHGFCKIGDVMNARMVFDE 251

Query: 303 MVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGR 362
            + R G RP    +N +IS YC S        L   M      PD+ TY+ L   L K  
Sbjct: 252 -ISRRGLRPSVVSFNTLISGYCRSKNVEEGFVLKSVMESERISPDVFTYSALINGLCKES 310

Query: 363 KLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGN 422
           ++ EA+GLF+EM +   V N       +          +A++ ++ M +        T N
Sbjct: 311 RVEEANGLFDEMCEMGLVPNGVTFTTLIDGQCKHGKIDLALRNFEIMKDRGIRPDLITYN 370

Query: 423 LLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKL 459
            L+ GLC    L EA K    M   G +      + L
Sbjct: 371 ALINGLCRDGDLKEARKLLNEMIGNGFKPDKITFTTL 407


>gi|357120470|ref|XP_003561950.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Brachypodium distachyon]
          Length = 925

 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 85/336 (25%), Positives = 147/336 (43%), Gaps = 11/336 (3%)

Query: 117 FDAMWDAIKSMKKENV-LSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNS 175
            D+ ++    M +E    + AT++++ +    + RV +A+     M ++G    V    +
Sbjct: 279 LDSAFEIFNRMDEEGCEPNAATYSTLINGLCNSGRVNEALDFISEMTRHGVLPTVHTFTA 338

Query: 176 LLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEV 234
            + A+C  G+  DAW+ F+ +     KP+  TY  L+ G    R    A   F  M  + 
Sbjct: 339 PIVALCDMGRIEDAWKIFIDMKKKGCKPNVYTYTSLISGQRVSR---MAIGLFHRMSRD- 394

Query: 235 GWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFF-KLAFEECLTGQNL 293
           G  P+ V  Y++ +  L++  + I   +     M + GC P  + + +L    C  G   
Sbjct: 395 GVVPNTV-TYNALMNVLMENME-IDSALIVFNMMGKHGCLPNTSSYNELIRGYCTIGDTE 452

Query: 294 RGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNI 353
           +    +   + GR    P    YN++I  YC S +T  A+++L+ M  NG  PD  +Y  
Sbjct: 453 KAMSMLTNMLKGRP--TPTLVTYNIIIKGYCDSGDTDVAIRVLELMKANGCQPDEWSYTE 510

Query: 354 LFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENH 413
           L     K  K+  ASG+FNEM+      N     A +  Y   +    A +  + M  + 
Sbjct: 511 LISGFCKISKMELASGMFNEMMDRGLCPNEVTYTALISGYCKDEKLDCAARMLERMKRSG 570

Query: 414 CSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
           C    +T N+L+ GL   +    A +  K M E+ I
Sbjct: 571 CRPNVQTYNVLIHGLTKQNNFSGAEELCKVMLEEKI 606



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 81/313 (25%), Positives = 140/313 (44%), Gaps = 20/313 (6%)

Query: 157 TFDVMEQY------GCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAI 209
           T  VM++Y      G + ++   NS+++A+C+DG   DA   + +V    +KPD  TY  
Sbjct: 209 TSTVMDRYHQILREGLQPNLLIYNSVINALCKDGNVRDAESIINKVFKSGMKPDTFTYTS 268

Query: 210 LLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMM 269
           ++ G+ + RD+ +A + F  M  E G +P N   Y S LI  L     + E ++ +  M 
Sbjct: 269 MILGYCRNRDLDSAFEIFNRMD-EEGCEP-NAATY-STLINGLCNSGRVNEALDFISEMT 325

Query: 270 ERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVG--RIGFRPDTHMYNMMISLYCYS 326
             G  P + TF       C  G+     E  W   +   + G +P+ + Y  +IS    S
Sbjct: 326 RHGVLPTVHTFTAPIVALCDMGR----IEDAWKIFIDMKKKGCKPNVYTYTSLISGQRVS 381

Query: 327 NETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENC 386
                A+ L   M  +G  P+  TYN L   L++  ++  A  +FN M K+  + N  + 
Sbjct: 382 R---MAIGLFHRMSRDGVVPNTVTYNALMNVLMENMEIDSALIVFNMMGKHGCLPNTSSY 438

Query: 387 RAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAE 446
              +R Y    D   A+     M++   +    T N+++ G CD      A++  + M  
Sbjct: 439 NELIRGYCTIGDTEKAMSMLTNMLKGRPTPTLVTYNIIIKGYCDSGDTDVAIRVLELMKA 498

Query: 447 KGIQVTPFALSKL 459
            G Q   ++ ++L
Sbjct: 499 NGCQPDEWSYTEL 511



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 81/377 (21%), Positives = 156/377 (41%), Gaps = 54/377 (14%)

Query: 103 AWNLVVDLLGKNCLFDA-MWDAIKSMKKENVLSLATFASVFSSYVVADRVK--------- 152
           AW + +D+  K C  +   + ++ S ++ + +++  F  +    VV + V          
Sbjct: 352 AWKIFIDMKKKGCKPNVYTYTSLISGQRVSRMAIGLFHRMSRDGVVPNTVTYNALMNVLM 411

Query: 153 ------DAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDND 205
                  A+  F++M ++GC  +  + N L+   C  G T  A   L  ++ GR  P   
Sbjct: 412 ENMEIDSALIVFNMMGKHGCLPNTSSYNELIRGYCTIGDTEKAMSMLTNMLKGRPTPTLV 471

Query: 206 TYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYL-----ITLLKGCDGIY- 259
           TY I+++G+    D   A +   E++   G  PD   +Y   +     I+ ++   G++ 
Sbjct: 472 TYNIIIKGYCDSGDTDVAIRVL-ELMKANGCQPDEW-SYTELISGFCKISKMELASGMFN 529

Query: 260 ------------------------ETVNSLKRMMER----GCNPGMTFFKLAFEECLTGQ 291
                                   E ++   RM+ER    GC P +  + +         
Sbjct: 530 EMMDRGLCPNEVTYTALISGYCKDEKLDCAARMLERMKRSGCRPNVQTYNVLIHGLTKQN 589

Query: 292 NLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTY 351
           N  GAE +   M+      PD   Y+ +I+  C +     A+++ ++MV +G  P++ TY
Sbjct: 590 NFSGAEELCKVMLEE-KISPDVVTYSTVINGLCNNGAIPLALEMFNKMVKHGCLPNLHTY 648

Query: 352 NILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIE 411
           + L + L +  ++ EA  +F+E+ K   + +       + V + S     A  F   MI 
Sbjct: 649 SSLIQALGQEGRVEEAEEMFSELKKQGLIPDEVTYVKMIEVCVMSGKVDRAFDFLGEMIN 708

Query: 412 NHCSDLSETGNLLVAGL 428
             C    +T ++L+ GL
Sbjct: 709 AGCQPTLQTYDVLIKGL 725



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 74/360 (20%), Positives = 145/360 (40%), Gaps = 13/360 (3%)

Query: 94  QLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVK 152
           Q   K   + +  ++  L K  +   + D    + +E +  +L  + SV ++      V+
Sbjct: 186 QRGPKMGLFTYTTLLIQLNKLNMTSTVMDRYHQILREGLQPNLLIYNSVINALCKDGNVR 245

Query: 153 DAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILL 211
           DA +  + + + G K D F   S++   CR+     A++ F R+ +   +P+  TY+ L+
Sbjct: 246 DAESIINKVFKSGMKPDTFTYTSMILGYCRNRDLDSAFEIFNRMDEEGCEPNAATYSTLI 305

Query: 212 EGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD--GIYETVNSLKRMM 269
            G      V  A     EM          +P   ++   ++  CD   I +       M 
Sbjct: 306 NGLCNSGRVNEALDFISEMTRH-----GVLPTVHTFTAPIVALCDMGRIEDAWKIFIDMK 360

Query: 270 ERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNET 329
           ++GC P +      +   ++GQ +          + R G  P+T  YN ++++   + E 
Sbjct: 361 KKGCKPNV----YTYTSLISGQRVSRMAIGLFHRMSRDGVVPNTVTYNALMNVLMENMEI 416

Query: 330 GAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAA 389
            +A+ + + M  +G  P+  +YN L           +A  +   M+K             
Sbjct: 417 DSALIVFNMMGKHGCLPNTSSYNELIRGYCTIGDTEKAMSMLTNMLKGRPTPTLVTYNII 476

Query: 390 VRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
           ++ Y DS D  VAI+  + M  N C     +   L++G C +  +  A      M ++G+
Sbjct: 477 IKGYCDSGDTDVAIRVLELMKANGCQPDEWSYTELISGFCKISKMELASGMFNEMMDRGL 536


>gi|122236160|sp|Q0WP85.1|PP150_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g13420, mitochondrial; Flags: Precursor
 gi|110738270|dbj|BAF01064.1| hypothetical protein [Arabidopsis thaliana]
          Length = 509

 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 123/490 (25%), Positives = 192/490 (39%), Gaps = 45/490 (9%)

Query: 18  HNKRKR-STFAS---HLDVPNLPPT----IKTLCEIIANTPSPTVEDVLDKTLIRVSQET 69
           H  R+R ST  S    L++P L P+    + +   I  + P   +E  L    I ++   
Sbjct: 14  HQLRRRISTIISAGFTLNLPKLEPSSDAELISQMLITNHNPFHFMESSLQLNGISLTPNL 73

Query: 70  VEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKK 129
           + Q L     +   A+ FF++     +   +P ++NL++D+LG+   FD +   I  M +
Sbjct: 74  IHQTLLRLRHNSKIALSFFQYLRSLPSPSTTPTSFNLIIDILGRVRQFDVVRQLIVEMDQ 133

Query: 130 ENVLSLATFASVFSSYVVADRVKDAITTFDVMEQY--GCKHDVFALNSLLSAICRDGKTI 187
               S  TF  +    + A   + A+  FD    +    +  +     LL  +C+ G T 
Sbjct: 134 T---SPETFLILVKRLIAAGLTRQAVRAFDDAPCFLENRRFRLVEFGFLLDTLCKYGYTK 190

Query: 188 DAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSY 247
            A             D   Y IL+ GW K R +  A+K   EM IE G +P NV  Y+  
Sbjct: 191 MAVGVFNERKEEFGSDEKVYTILIAGWCKLRRIDMAEKFLVEM-IESGIEP-NVVTYNVL 248

Query: 248 LITLLKGCD---------GIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEF 298
           L  + +             +         M +RG  P +T F +             AE 
Sbjct: 249 LNGICRTASLHPEERFERNVRNAEKVFDEMRQRGIEPDVTSFSIVLHMYSRAHK---AEL 305

Query: 299 IWGAM--VGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFE 356
               M  +   G  P    Y  ++   C       A +LL+ MV +G  P   TYN  F+
Sbjct: 306 TLDKMKLMKAKGISPTIETYTSVVKCLCSCGRLEEAEELLETMVESGISPSSATYNCFFK 365

Query: 357 FLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSD 416
              KGRK  +A+G  N   K +N L    C+ + + Y      ++ +   +  ++    D
Sbjct: 366 -EYKGRK--DANGAMNLYRKMKNGL----CKPSTQTYNVLLGTFINLGKME-TVKEIWDD 417

Query: 417 L--SETG------NLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARK 468
           L  SETG        LV GLC      EA  Y   M E+G          L + LI++ K
Sbjct: 418 LKASETGPDLDSYTSLVHGLCSKEKWKEACGYFVEMIERGFLPQKLTFETLYKGLIQSNK 477

Query: 469 EAVYEELLKK 478
              +  L KK
Sbjct: 478 MRTWRRLKKK 487


>gi|359488050|ref|XP_002263119.2| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Vitis vinifera]
          Length = 686

 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 80/319 (25%), Positives = 137/319 (42%), Gaps = 23/319 (7%)

Query: 136 ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR- 194
            TF ++     V  ++ +A+  FD     G + DV    +L++ +C+ G T  A + LR 
Sbjct: 221 TTFNTLIRGLCVEGKIGEALHLFDKTIGEGFQPDVVTYGTLMNGLCKVGNTSAAIRLLRS 280

Query: 195 VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG 254
           +V    +P+   Y  +++   K+R V  A   F EM+ + G  PD +  Y+S +  L   
Sbjct: 281 MVQKNCRPNVIAYNTIIDSLCKDRQVTEAFNLFSEMITK-GISPD-IFTYNSLIHALCNL 338

Query: 255 CDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTH 314
           C+  + T   L  M+     P +  F    +       +  A  +   M+ R G  PD  
Sbjct: 339 CEWKHVT-TLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKR-GVEPDVV 396

Query: 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
            Y  ++  +C  +E   A+K+ D MV+ G  P++++YNIL     + +++ +A GL  +M
Sbjct: 397 TYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQM 456

Query: 375 --------VKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMI-ENHCSDLSETGNLLV 425
                       N L H  C      +        AI  +  M+      DL  T  +L+
Sbjct: 457 SLQGLIADTVTYNTLIHGLCHVGRLQH--------AIALFHEMVASGQIPDLV-TYRILL 507

Query: 426 AGLCDMHMLPEAVKYAKGM 444
             LC  H L EA+   K +
Sbjct: 508 DYLCKNHHLAEAMVLLKAI 526



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 86/341 (25%), Positives = 146/341 (42%), Gaps = 34/341 (9%)

Query: 124 IKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICR 182
           ++SM ++N   ++  + ++  S     +V +A   F  M   G   D+F  NSL+ A+C 
Sbjct: 278 LRSMVQKNCRPNVIAYNTIIDSLCKDRQVTEAFNLFSEMITKGISPDIFTYNSLIHALC- 336

Query: 183 DGKTIDAWQFL-----RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWD 237
               +  W+ +      +V+ +I P+   ++ +++   KE  +A A     +M+I+ G +
Sbjct: 337 ---NLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVV-DMMIKRGVE 392

Query: 238 PDNVPAYDSYLITLLKGC--DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRG 295
           PD V    +Y   +   C    + E V     M+ +GC P +  + +        Q +  
Sbjct: 393 PDVV----TYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDK 448

Query: 296 AEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILF 355
           A  +   M  + G   DT  YN +I   C+      A+ L  EMV +G  PD+ TY IL 
Sbjct: 449 AMGLLEQMSLQ-GLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILL 507

Query: 356 EFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCS 415
           ++L K   L EA  L          +   N  A + VY  + D        +    +  S
Sbjct: 508 DYLCKNHHLAEAMVLL-------KAIEGSNLDADILVYNIAIDGMCRAGELEAA-RDLFS 559

Query: 416 DLSETG--------NLLVAGLCDMHMLPEAVKYAKGMAEKG 448
           +LS  G        N+++ GLC   +L EA K  + M E G
Sbjct: 560 NLSSKGLQPDVRTYNIMIHGLCKRGLLDEANKLFRKMDENG 600



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 75/346 (21%), Positives = 147/346 (42%), Gaps = 25/346 (7%)

Query: 117 FDAMWDAIKSMKKENVL----SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFA 172
           F+ + DA+ S  +   +    S   F  + +S          ++    M+ +G   DV+ 
Sbjct: 128 FNTLDDALSSFNRMLHMHPPPSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYT 187

Query: 173 LNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMV 231
           LN L+++ C   +   A+  L +++    +PDN T+  L+ G   E  +  A   F + +
Sbjct: 188 LNILINSFCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTI 247

Query: 232 IEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQ 291
            E G+ PD V  Y + +  L K        +  L+ M+++ C P +  +    +     +
Sbjct: 248 GE-GFQPD-VVTYGTLMNGLCK-VGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDR 304

Query: 292 NLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTY 351
            +  A  ++  M+ + G  PD   YN +I   C   E      LL+EMV +   P++  +
Sbjct: 305 QVTEAFNLFSEMITK-GISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVF 363

Query: 352 NILFEFLVKGRKLWEASGLFNEMVKNE--------NVLNHENCRAAVRVYMDSDDPYVAI 403
           + + + L K   +  A  + + M+K            L   +C   +R  MD      A+
Sbjct: 364 STVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHC---LRSEMDE-----AV 415

Query: 404 KFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
           K +  M+   C     + N+L+ G C +  + +A+   + M+ +G+
Sbjct: 416 KVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGL 461



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 85/357 (23%), Positives = 155/357 (43%), Gaps = 30/357 (8%)

Query: 97  DKHSPYAWNLVVDLLGK---------NCLFDAM-----WDAIKSMKKENVLS-----LAT 137
           D+    A+NL  +++ K         N L  A+     W  + ++  E V S     +  
Sbjct: 303 DRQVTEAFNLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVV 362

Query: 138 FASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVV 196
           F++V  +      +  A    D+M + G + DV    +L+   C   +  +A + F  +V
Sbjct: 363 FSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMV 422

Query: 197 DGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD 256
                P+  +Y IL+ G+ + + +  A     +M ++ G   D V  Y++ LI  L    
Sbjct: 423 HKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQ-GLIADTV-TYNT-LIHGLCHVG 479

Query: 257 GIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMY 316
            +   +     M+  G  P +  +++  +      +L  A  +  A+ G      D  +Y
Sbjct: 480 RLQHAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGS-NLDADILVY 538

Query: 317 NMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK 376
           N+ I   C + E  AA  L   +   G  PD++TYNI+   L K   L EA+ LF +M  
Sbjct: 539 NIAIDGMCRAGELEAARDLFSNLSSKGLQPDVRTYNIMIHGLCKRGLLDEANKLFRKM-- 596

Query: 377 NENVLNHENC--RAAVRVYMDSDDPYVAIKFWKYMI-ENHCSDLSETGNLLVAGLCD 430
           +EN  + + C     +R ++ S++ + A +  + M+ E   +D+S T  L+V  L D
Sbjct: 597 DENGCSRDGCIYNTIIRGFLRSNETFGATQLLQEMLAEGFSADVSTT-TLIVEMLSD 652



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 64/156 (41%)

Query: 308 GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEA 367
           G  PD +  N++I+ +C+    G A  +L +++  G  PD  T+N L   L    K+ EA
Sbjct: 180 GIPPDVYTLNILINSFCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEA 239

Query: 368 SGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAG 427
             LF++ +      +       +       +   AI+  + M++ +C       N ++  
Sbjct: 240 LHLFDKTIGEGFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDS 299

Query: 428 LCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQIL 463
           LC    + EA      M  KGI    F  + L   L
Sbjct: 300 LCKDRQVTEAFNLFSEMITKGISPDIFTYNSLIHAL 335


>gi|312190399|gb|ADQ43199.1| unknown [Eutrema parvulum]
          Length = 1128

 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 89/381 (23%), Positives = 161/381 (42%), Gaps = 11/381 (2%)

Query: 75  KFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL- 133
           KF+       VK F         K + + +N+++D + K    +A     + MK   ++ 
Sbjct: 107 KFAKLGKTDGVKRFFKDMIGAGSKPTVFTYNIMIDCMWKEGDIEAARGLFEEMKFRGLIP 166

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
              T+ S+   Y    R+ D +  F+ M+   C+ DV   NSL++  C+ GK     +F 
Sbjct: 167 DTVTYNSMIDGYGKVGRLDDTVYFFEEMKSMSCEPDVITYNSLINCFCKSGKLPKGLEFY 226

Query: 194 R-VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
           R +    +KP+  +Y+ L++ + KE  +  A K + +M   VG    +VP   +Y   + 
Sbjct: 227 REMKQSGLKPNVVSYSTLVDAFCKEDMMQQAIKFYVDMR-RVG----HVPNEFTYTSLVD 281

Query: 253 KGC--DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFR 310
             C    + +       M+E G    +  +    +     + ++ AE ++G MV   G  
Sbjct: 282 ANCKIGNLSDAFRLANEMLEVGVEWNVVTYTALIDGLCDAERMKEAEKLFGKMV-TAGVI 340

Query: 311 PDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGL 370
           P+   YN +I  +  +     A++LL+E+   G  PD+  Y      L    K+  A  +
Sbjct: 341 PNLASYNALIHGFVKAKNMDRALELLNELKGRGIQPDLLLYGTFIWGLCGLEKIEAAKVV 400

Query: 371 FNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCD 430
            NEM +N    N       +  Y  S +P   +   + M E        T  +L+ GLC 
Sbjct: 401 MNEMQENGIKANTLIYTTLMDAYFKSGNPTEGLHLLEEMQELDHEVTVVTFCVLIDGLCK 460

Query: 431 MHMLPEAVKYAKGMAEK-GIQ 450
             ++ +A+ Y   M+   G+Q
Sbjct: 461 NKLVSKAIDYFGRMSNDFGLQ 481



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 88/368 (23%), Positives = 148/368 (40%), Gaps = 46/368 (12%)

Query: 116 LFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNS 175
           +FD +W    S +   V     F ++FS  +    +++A   F  M+++       + N 
Sbjct: 48  VFDELW----STRNVCVPGFGVFDALFSVLIDLGMLEEATQCFSKMKRFRVFPKTRSCNG 103

Query: 176 LLSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEV 234
           LL    + GKT    +F + ++    KP   TY I+++   KE D+  A+  F EM    
Sbjct: 104 LLHKFAKLGKTDGVKRFFKDMIGAGSKPTVFTYNIMIDCMWKEGDIEAARGLFEEMKFR- 162

Query: 235 GWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPG-MTFFKLAFEECLTGQNL 293
           G  PD V  Y+S +I        + +TV   + M    C P  +T+  L    C +G+  
Sbjct: 163 GLIPDTV-TYNS-MIDGYGKVGRLDDTVYFFEEMKSMSCEPDVITYNSLINCFCKSGKLP 220

Query: 294 RGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNI 353
           +G EF     + + G +P+   Y+ ++  +C  +    A+K   +M   G  P+  TY  
Sbjct: 221 KGLEFY--REMKQSGLKPNVVSYSTLVDAFCKEDMMQQAIKFYVDMRRVGHVPNEFTYTS 278

Query: 354 LFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENH 413
           L +   K   L +A  L NEM++                        V ++ W  +    
Sbjct: 279 LVDANCKIGNLSDAFRLANEMLE------------------------VGVE-WNVV---- 309

Query: 414 CSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYE 473
                 T   L+ GLCD   + EA K    M   G+     + + L    +KA+      
Sbjct: 310 ------TYTALIDGLCDAERMKEAEKLFGKMVTAGVIPNLASYNALIHGFVKAKNMDRAL 363

Query: 474 ELLKKCKA 481
           ELL + K 
Sbjct: 364 ELLNELKG 371



 Score = 45.4 bits (106), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 43/203 (21%), Positives = 84/203 (41%), Gaps = 10/203 (4%)

Query: 149 DRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDND--- 205
           ++++ A    + M++ G K +     +L+ A  + G   +    L  +    + D++   
Sbjct: 392 EKIEAAKVVMNEMQENGIKANTLIYTTLMDAYFKSGNPTEGLHLLEEMQ---ELDHEVTV 448

Query: 206 -TYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNS 264
            T+ +L++G  K + V+ A   FG M  + G  P N   Y + +  L K  + +      
Sbjct: 449 VTFCVLIDGLCKNKLVSKAIDYFGRMSNDFGLQP-NAAVYTAMIDGLCKE-NQVKAATTL 506

Query: 265 LKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYC 324
            ++M + G  P  T +    +  L   N+  A  +   M   IG + D   Y  ++  + 
Sbjct: 507 FEQMAQEGLVPDRTAYTSLMDGNLKQGNMLEALALRDKMA-EIGMKLDLLAYTSLVWGFS 565

Query: 325 YSNETGAAMKLLDEMVYNGAFPD 347
             N+   A   L+EM+     PD
Sbjct: 566 QCNQLQKARSFLEEMIGEEILPD 588


>gi|225451354|ref|XP_002275019.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 744

 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 71/263 (26%), Positives = 115/263 (43%), Gaps = 13/263 (4%)

Query: 136 ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRV 195
            TF ++     V  ++ +A+  FD M   G + +V    +L++ +C+ G T  A + LR 
Sbjct: 127 TTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRS 186

Query: 196 VD-GRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG 254
           ++ G  +PD   Y  +++   K+R V  A   F +MV + G  PD +  Y S +  L   
Sbjct: 187 MEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQ-GISPD-IFTYTSLVHALCNL 244

Query: 255 CDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTH 314
           C+  + T   L +M+     P +  F    +       +  A  I   M+ R G  PD  
Sbjct: 245 CEWKHVT-TLLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQR-GVEPDVV 302

Query: 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
            Y  ++  +C  +E   A+K+ D MV  G  PD+ +Y  L     K  K+ +A  LF EM
Sbjct: 303 TYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEM 362

Query: 375 VKNE--------NVLNHENCRAA 389
            + E        N L H  C   
Sbjct: 363 CRKEWIPDTKTYNTLMHGLCHVG 385



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 80/331 (24%), Positives = 138/331 (41%), Gaps = 6/331 (1%)

Query: 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDV 160
           + +  +V  L   C +  +   +  M    +L  +  F++V  +     +V +A    D+
Sbjct: 232 FTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDM 291

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERD 219
           M Q G + DV    +L+   C   +  +A + F  +V     PD  +Y  L+ G+ K   
Sbjct: 292 MIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINGYCKIHK 351

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTF 279
           +  A   F EM  +  W PD    Y++ L+  L     + + +     M+ RG  P +  
Sbjct: 352 IDKAMYLFEEMCRK-EWIPDT-KTYNT-LMHGLCHVGRLQDAIALFHEMVARGQMPDLVT 408

Query: 280 FKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEM 339
           + +  +      +L  A  +  A+       PD  +YN++I   C + E  AA  L   +
Sbjct: 409 YSILLDSLCKNCHLEEAMALLKAIEAS-NLNPDIQVYNIIIDGMCRAGELEAARDLFSNL 467

Query: 340 VYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDP 399
              G  P + TYNI+   L K   L EA+ LF EM  N+   +        R ++ +++ 
Sbjct: 468 SSKGLHPSVWTYNIMIHGLCKRGLLNEANKLFMEMDGNDCSPDGCTYNTIARGFLQNNET 527

Query: 400 YVAIKFWKYMIENHCSDLSETGNLLVAGLCD 430
             AI+  + M+    S    T  LLV  L D
Sbjct: 528 LRAIQLLEEMLARGFSADVSTTTLLVEMLSD 558



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 57/112 (50%), Gaps = 3/112 (2%)

Query: 265 LKRMMERGCNPG-MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLY 323
           L ++++ G  P   TF  L    C+ G+ +  A  ++  M+   GF+P+   Y  +I+  
Sbjct: 114 LAKILKLGHQPDPTTFTTLIRGLCVEGK-IGEALHLFDKMIDE-GFQPNVVTYGTLINGL 171

Query: 324 CYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
           C    T AA++LL  M      PD+  Y  + + L K R++ EA  LF++MV
Sbjct: 172 CKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMV 223



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 36/156 (23%), Positives = 63/156 (40%)

Query: 308 GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEA 367
           G  P+ +  N++I+ +C+ N  G A  +L +++  G  PD  T+  L   L    K+ EA
Sbjct: 86  GVPPNVYTLNILINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEA 145

Query: 368 SGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAG 427
             LF++M+      N       +       +   AI+  + M + +C         ++  
Sbjct: 146 LHLFDKMIDEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDS 205

Query: 428 LCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQIL 463
           LC    + EA      M  +GI    F  + L   L
Sbjct: 206 LCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHAL 241



 Score = 45.1 bits (105), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 65/180 (36%), Gaps = 14/180 (7%)

Query: 259 YETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNM 318
           Y TV SL   M+    P   +            N  G  F   A + ++G +PD   +  
Sbjct: 72  YSTVLSLSTQMDSFGVPPNVYTLNILINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTT 131

Query: 319 MISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNE 378
           +I   C   + G A+ L D+M+  G  P++ TY  L   L K      A  L   M +  
Sbjct: 132 LIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQG- 190

Query: 379 NVLNHENCRAAVRVYMDSDDPYV-------AIKFWKYMIENHCSDLSETGNLLVAGLCDM 431
                 NC+  V +Y    D          A   +  M+    S    T   LV  LC++
Sbjct: 191 ------NCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNL 244


>gi|449531171|ref|XP_004172561.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Cucumis sativus]
          Length = 761

 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 78/256 (30%), Positives = 120/256 (46%), Gaps = 17/256 (6%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDA-WQFLRV 195
           +++ +        R  +A   F  M+  G   DV +  SL+   CR GK  DA + F  +
Sbjct: 485 SYSIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYLFNEM 544

Query: 196 VDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG- 254
           VD  ++PD  T+++L++   KE  V  A +   E++I+ G  P+ V    +Y  TL+KG 
Sbjct: 545 VDIGVQPDVTTFSVLIDMLCKEGKVIEANELL-EVMIQRGCIPNTV----TY-TTLVKGL 598

Query: 255 C--DGIYETVNSLKRMMERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIG--- 308
           C  D I E      +M + GC P + T+  L    C TG N++ A  +   M+   G   
Sbjct: 599 CMNDRISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQTG-NIKTALELHKKMLSDTGQYG 657

Query: 309 --FRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWE 366
             F+PD   Y+++I   C       A +L  EM   G  P++ +Y  L     +  KL +
Sbjct: 658 TNFKPDVISYSIIIDGLCKHGREDEARELFKEMKALGVIPNVISYTSLIHGFCRSGKLED 717

Query: 367 ASGLFNEMVKNENVLN 382
           A  LFNEMV     LN
Sbjct: 718 AKHLFNEMVDQGVQLN 733



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 98/407 (24%), Positives = 176/407 (43%), Gaps = 26/407 (6%)

Query: 93  YQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRV 151
           Y +  K +  ++++++D L K+   D   +  K MK + ++  + ++ ++   + ++ + 
Sbjct: 294 YGIKCKPTLISYSIIIDGLCKDRREDEARELFKEMKAQGIMPDVISYTTLIHGFCLSGKW 353

Query: 152 KDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAIL 210
           + A   F+ M   G + DV   + L+  +C+ GK I+A + L VV  R   PD  T   L
Sbjct: 354 EKAKCLFNEMLDVGIQPDVTTSSVLIDMLCKKGKVIEANKLLEVVIQRGCIPDVVTCTTL 413

Query: 211 LEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG-CDG--IYETVNSLKR 267
           ++G   +  ++ A + F +M  ++G  P+ V        TL+KG C    I   +   K 
Sbjct: 414 VKGLCMKHRISKATQLFLKMQ-KLGCMPNVVTCA-----TLMKGLCQSGNIKIALELHKN 467

Query: 268 MMER------GCNPGMTFFKLAFEE-CLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMI 320
           M+         C P    + +  +  C  G+     E      +  +G  PD   Y  +I
Sbjct: 468 MLSDTSPYGINCKPNAISYSIIIDGLCKCGREDEARELF--KEMKALGVIPDVISYTSLI 525

Query: 321 SLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENV 380
             +C S +   A  L +EMV  G  PD+ T+++L + L K  K+ EA+ L   M++   +
Sbjct: 526 HGFCRSGKWKDAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCI 585

Query: 381 LNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKY 440
            N       V+    +D    A + +  M +  C     T   L+ GLC    +  A++ 
Sbjct: 586 PNTVTYTTLVKGLCMNDRISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALEL 645

Query: 441 AKGM----AEKGIQVTP--FALSKLKQILIKARKEAVYEELLKKCKA 481
            K M     + G    P   + S +   L K  +E    EL K+ KA
Sbjct: 646 HKKMLSDTGQYGTNFKPDVISYSIIIDGLCKHGREDEARELFKEMKA 692



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 88/365 (24%), Positives = 145/365 (39%), Gaps = 79/365 (21%)

Query: 127 MKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKT 186
           +++  +L + T++++     +  R+ +A   F  M++ GC+ D  A  +L+  +C+ GK 
Sbjct: 37  VQRGCILDIVTYSTLIKGLCMKHRISEATQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKI 96

Query: 187 IDAWQFLRVVDG-------RIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPD 239
             A    + +         + KP   +Y+I+++G  K+R    A++ F EM  + G  PD
Sbjct: 97  NIALHLHQEMLNDTSQYGIKCKPTLVSYSIIIDGLCKDRREDEARELFKEMKAQ-GMMPD 155

Query: 240 NVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFI 299
            V +Y S +    +   G +E    L                  F E L           
Sbjct: 156 -VISYTSLIHGFCR--SGKWEKAKCL------------------FNEMLD---------- 184

Query: 300 WGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLV 359
                  +G R D    +M+I + C   +   A +LL+ M+  G   DI TY+ L + L 
Sbjct: 185 -------VGIRSDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLC 237

Query: 360 KGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSE 419
              ++ EA+ LF  M K         CR              AI +   M       L +
Sbjct: 238 MKHRISEATRLFMSMQK-------LGCRPD------------AIAYGTLM-----KGLCQ 273

Query: 420 TGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQI--LIKARKEAVYEELLK 477
           TGN+  A      ML +  +Y       GI+  P  +S    I  L K R+E    EL K
Sbjct: 274 TGNINTALQLHQEMLNDTGRY-------GIKCKPTLISYSIIIDGLCKDRREDEARELFK 326

Query: 478 KCKAH 482
           + KA 
Sbjct: 327 EMKAQ 331



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 79/298 (26%), Positives = 138/298 (46%), Gaps = 20/298 (6%)

Query: 91  SAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVAD 149
           S Y +N K +  ++++++D L K    D   +  K MK   V+  + ++ S+   +  + 
Sbjct: 473 SPYGINCKPNAISYSIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSG 532

Query: 150 RVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYA 208
           + KDA   F+ M   G + DV   + L+  +C++GK I+A + L V+  R   P+  TY 
Sbjct: 533 KWKDAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYT 592

Query: 209 ILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG-CD-GIYETVNSLK 266
            L++G      ++ A + F +M  ++G  PD V  Y     TL+KG C  G  +T   L 
Sbjct: 593 TLVKGLCMNDRISEATQLFMKMQ-KLGCLPD-VVTYG----TLMKGLCQTGNIKTALELH 646

Query: 267 RMMERGCNPGMTFFK---LAFEECLTGQNLRG----AEFIWGAMVGRIGFRPDTHMYNMM 319
           + M        T FK   +++   + G    G    A  ++  M   +G  P+   Y  +
Sbjct: 647 KKMLSDTGQYGTNFKPDVISYSIIIDGLCKHGREDEARELFKEMKA-LGVIPNVISYTSL 705

Query: 320 ISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKN 377
           I  +C S +   A  L +EMV  G   +  TY+++     K  ++ +A  LF +M  N
Sbjct: 706 IHGFCRSGKLEDAKHLFNEMVDQGVQLNAVTYSVMIHGFCKEGQIDKA--LFQKMEAN 761



 Score = 48.1 bits (113), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 73/178 (41%), Gaps = 33/178 (18%)

Query: 307 IGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWE 366
           +G +PD     ++I ++C   +   A +LL+ MV  G   DI TY+ L + L    ++ E
Sbjct: 4   VGIQPDVTTSGVLIDMFCKEGKVIEANELLEVMVQRGCILDIVTYSTLIKGLCMKHRISE 63

Query: 367 ASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVA 426
           A+ LF  M K         CR              AI +   M       L +TG + +A
Sbjct: 64  ATQLFMSMKK-------LGCRPD------------AIAYGTLM-----KGLCQTGKINIA 99

Query: 427 GLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQI--LIKARKEAVYEELLKKCKAH 482
                 ML +  +Y       GI+  P  +S    I  L K R+E    EL K+ KA 
Sbjct: 100 LHLHQEMLNDTSQY-------GIKCKPTLVSYSIIIDGLCKDRREDEARELFKEMKAQ 150


>gi|357138018|ref|XP_003570595.1| PREDICTED: pentatricopeptide repeat-containing protein At1g73400,
           mitochondrial-like [Brachypodium distachyon]
          Length = 548

 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 85/352 (24%), Positives = 138/352 (39%), Gaps = 51/352 (14%)

Query: 84  AVKFFRWSAYQLNDKHSPYAWNLVVDLLG----KNCLFDAMWDAIKSMKKENVLSLAT-- 137
           A +FF W++ Q N +H   A+N V+D L     K   F  + D +  MK+    S+    
Sbjct: 122 AFRFFAWASQQDNYEHDQAAYNEVIDTLSGTRYKARQFGVLCDVLDHMKRHRTRSVPVED 181

Query: 138 FASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVD 197
             ++  +Y                 +     +  ALN LL A C+ G   +A      V 
Sbjct: 182 LLAILRAYTEKHLTNLRKLAKKRRVRMRTPPETDALNILLDAFCKCGMVREAETVFGRVK 241

Query: 198 GRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDN---VPAYDSY------- 247
            +++ + +TY IL  GW + RD   A K   EM++ +   P++   + A DS+       
Sbjct: 242 RKLQGNAETYNILFFGWCRARDPKKAMKVLEEMIL-MKHAPESFTYIAAIDSFCSAGLVS 300

Query: 248 --------------------------LITLLKGCDGIYETVNSLKRMMERGCNPGMTFFK 281
                                     +I  L   D + +    +  M++ GC P ++ FK
Sbjct: 301 EAKELFEFMRTEGSSISSPTAKAYSVMIVALVKADRMDDCFELISDMIKLGCMPDVSTFK 360

Query: 282 LAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVY 341
              E       +  A F+   M G+ GF PD   YN  + + C   +   A+KL + M+ 
Sbjct: 361 DLIEGMCLVDKIDTAYFVLEEM-GKAGFPPDIVTYNCFLEVLCNLQKADDALKLCERMIE 419

Query: 342 NGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVY 393
               P + TYN+L     + R+   A  ++ EM K         CR AV  Y
Sbjct: 420 AHCEPSVHTYNMLMVMFFQMREPHRALDIWLEMDKR-------GCRRAVDTY 464


>gi|297842914|ref|XP_002889338.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335180|gb|EFH65597.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 712

 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 94/375 (25%), Positives = 154/375 (41%), Gaps = 54/375 (14%)

Query: 65  VSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAI 124
           +S+ TV Q L+     P   ++FF W  Y     H   ++ L+++ LG+    +A  + +
Sbjct: 69  LSRTTVLQTLRL-IKVPADGLRFFDW-VYNKGFSHKEQSFFLMLEFLGRARNLNAARNFL 126

Query: 125 KSMKKEN----VLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAI 180
            S++K +     L    F S+  SY  A   ++++  F  M++ G    V   NSLLS +
Sbjct: 127 FSIEKRSNGCVKLQDRYFNSLIRSYGNAGLFQESVNLFQTMKKMGISPSVLTFNSLLSIL 186

Query: 181 CRDGKT---IDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWD 237
            + G+T    D +  +R   G + PD+ T+  L+ G+ K   V  A   F EM +    +
Sbjct: 187 LKRGRTGMAHDMFDEMRRTYG-VTPDSYTFNTLISGFCKNSMVDQAFTIFKEMEL-YSCN 244

Query: 238 PDNV---------------------------------PAYDSYLITLLKG-C--DGIYET 261
           PD V                                 P   SY  TLL+G C    I E 
Sbjct: 245 PDVVTYNTIIDGLCRAGKVKIAHNLLNGMLKKATAVHPNIVSY-TTLLRGYCMKQEIDEA 303

Query: 262 VNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGR---IGFRPDTHMYNM 318
           +     M+ RG  P    +    +           + I G ++G      F PD   +N+
Sbjct: 304 LLVFHEMLTRGLKPNAVTYNTLIKGLSEAHRY---DEIKGFLIGGDAFTTFSPDACTFNI 360

Query: 319 MISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNE 378
           +I  +C +    AAMK+  EM+     PD  +Y++L   L    +  +A  LFNE+ + E
Sbjct: 361 LIKAHCDAGHLDAAMKVFQEMLNMKLHPDSASYSVLIRTLCLRNEFDKAETLFNELFEKE 420

Query: 379 NVLNHENCRAAVRVY 393
            +L    C+     Y
Sbjct: 421 VLLGKNECKPLAAAY 435



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 65/251 (25%), Positives = 105/251 (41%), Gaps = 20/251 (7%)

Query: 241 VPAYDSYLITLLK--GCDGIY-ETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAE 297
           V   D Y  +L++  G  G++ E+VN  + M + G +P +  F       L       A 
Sbjct: 137 VKLQDRYFNSLIRSYGNAGLFQESVNLFQTMKKMGISPSVLTFNSLLSILLKRGRTGMAH 196

Query: 298 FIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEF 357
            ++  M    G  PD++ +N +IS +C ++    A  +  EM      PD+ TYN + + 
Sbjct: 197 DMFDEMRRTYGVTPDSYTFNTLISGFCKNSMVDQAFTIFKEMELYSCNPDVVTYNTIIDG 256

Query: 358 LVKGRKLWEASGLFNEMVKNENVLNHENC---RAAVRVYMDSDDPYVAIKFWKYMIENHC 414
           L +  K+  A  L N M+K    + H N       +R Y    +   A+  +  M+    
Sbjct: 257 LCRAGKVKIAHNLLNGMLKKATAV-HPNIVSYTTLLRGYCMKQEIDEALLVFHEMLTRGL 315

Query: 415 SDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLK-QILIKARKEA--- 470
              + T N L+ GL + H   E     KG    G   T F+       ILIKA  +A   
Sbjct: 316 KPNAVTYNTLIKGLSEAHRYDE----IKGFLIGGDAFTTFSPDACTFNILIKAHCDAGHL 371

Query: 471 -----VYEELL 476
                V++E+L
Sbjct: 372 DAAMKVFQEML 382



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 57/272 (20%), Positives = 111/272 (40%), Gaps = 24/272 (8%)

Query: 109 DLLGKNCLFDAMWDAIKSMKKENVLS------------LATFASVFSSYVVADRVKDAIT 156
           D++  N + D +  A K     N+L+            + ++ ++   Y +   + +A+ 
Sbjct: 246 DVVTYNTIIDGLCRAGKVKIAHNLLNGMLKKATAVHPNIVSYTTLLRGYCMKQEIDEALL 305

Query: 157 TFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDG--RIKPDNDTYAILLEGW 214
            F  M   G K +    N+L+  +    +  +   FL   D      PD  T+ IL++  
Sbjct: 306 VFHEMLTRGLKPNAVTYNTLIKGLSEAHRYDEIKGFLIGGDAFTTFSPDACTFNILIKAH 365

Query: 215 EKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITL-----LKGCDGIYETVNSLKRMM 269
                +  A K F EM + +   PD+  +Y   + TL         + ++  +   + ++
Sbjct: 366 CDAGHLDAAMKVFQEM-LNMKLHPDS-ASYSVLIRTLCLRNEFDKAETLFNELFEKEVLL 423

Query: 270 ERG-CNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNE 328
            +  C P    + L FE        + AE ++  ++ R    P +  Y  +I+  C   +
Sbjct: 424 GKNECKPLAAAYNLMFEYLCANGKAKQAEKVFRQLMKRGAQDPSS--YRTLITGLCREGK 481

Query: 329 TGAAMKLLDEMVYNGAFPDIQTYNILFEFLVK 360
             AA +LL  M+     PD +TY +L + L+K
Sbjct: 482 FKAAYELLVLMLRREFVPDPETYEVLIDGLLK 513



 Score = 42.0 bits (97), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 56/266 (21%), Positives = 104/266 (39%), Gaps = 17/266 (6%)

Query: 153 DAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ--FLRVVDGRIKPDNDTYAIL 210
           DA TTF          D    N L+ A C D   +DA    F  +++ ++ PD+ +Y++L
Sbjct: 346 DAFTTFS--------PDACTFNILIKAHC-DAGHLDAAMKVFQEMLNMKLHPDSASYSVL 396

Query: 211 LEGWEKERDVANAKKTFGEM----VIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLK 266
           +       +   A+  F E+    V+    +   + A  + +   L       +     +
Sbjct: 397 IRTLCLRNEFDKAETLFNELFEKEVLLGKNECKPLAAAYNLMFEYLCANGKAKQAEKVFR 456

Query: 267 RMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYS 326
           ++M+RG     ++  L    C  G+     E +   ++ R  F PD   Y ++I      
Sbjct: 457 QLMKRGAQDPSSYRTLITGLCREGKFKAAYELL--VLMLRREFVPDPETYEVLIDGLLKI 514

Query: 327 NETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENC 386
            E   A   L  M+ +   P   T++ +   LVK +   ++ GL   M++     N +  
Sbjct: 515 GEALLAHDTLQRMLRSSYLPVATTFHSVLAELVKRKFANDSFGLLTVMLEKRIRQNIDLS 574

Query: 387 RAAVRVYMDSDDPYVAIKFWKYMIEN 412
             AVR+   S     A    + + +N
Sbjct: 575 TQAVRLVFSSAQKEKAFLIVRLLYDN 600


>gi|356510925|ref|XP_003524184.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 594

 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 102/424 (24%), Positives = 182/424 (42%), Gaps = 23/424 (5%)

Query: 50  PSPTVED--VLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLV 107
           P P+V+D  +L   ++R+              H   A+   +     L  +      N+V
Sbjct: 72  PLPSVKDFTLLLGAIVRLK-------------HYTTAISLVKHMFSSLGIEADTITLNIV 118

Query: 108 VDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVMEQYGC 166
           ++ L +  L    +  + +M K  +  ++ T  ++ +   V   V  A+   D ME+   
Sbjct: 119 INCLCRLKLVAFGFSVLGTMFKLGLEPTVMTLTTLINGLCVQGNVAQAVGLADHMEKMWY 178

Query: 167 KHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVANAKK 225
             DV+    L++ +C+ G T+ A  +LR ++ R  KP+   Y+ +++G  K+  V+ A  
Sbjct: 179 PLDVYTYGVLINGLCKTGDTLAAVGWLRKMEERNWKPNVVVYSTIMDGLCKDGLVSEALN 238

Query: 226 TFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFE 285
              EM  + G  P N+  Y + LI  L       E  + L  MM+ G  P +    +  +
Sbjct: 239 LCSEMNGK-GVRP-NLVTY-ACLIQGLCNFGRWKEAGSLLDEMMKMGMRPDLQMLNILVD 295

Query: 286 E-CLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGA 344
             C  G+ ++ A+ + G M+   G  PD   YN +I +YC  N+   AM++   MV  G 
Sbjct: 296 AFCKEGKVMQ-AKSVIGFMI-LTGEGPDVFTYNSLIHIYCLQNKMNEAMRVFHLMVSRGR 353

Query: 345 FPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIK 404
            PDI  +  L     K + + +A  L  EM K   V +       +  +  +  P  A +
Sbjct: 354 LPDIVVFTSLIHGWCKDKNINKAMHLLEEMSKMGFVPDVATWTTLIGGFCQAGRPLAAKE 413

Query: 405 FWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILI 464
            +  M +       +T  +++ GLC  ++L EAV  AK M +  + +     S L   + 
Sbjct: 414 LFLNMHKYGQVPNLQTCAVILDGLCKENLLSEAVSLAKAMEKSNLDLNIVIYSILLDGMC 473

Query: 465 KARK 468
            A K
Sbjct: 474 SAGK 477



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 80/354 (22%), Positives = 137/354 (38%), Gaps = 40/354 (11%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           ++  ++++         V +A+     M   G + ++     L+  +C  G+  +A   L
Sbjct: 216 NVVVYSTIMDGLCKDGLVSEALNLCSEMNGKGVRPNLVTYACLIQGLCNFGRWKEAGSLL 275

Query: 194 -RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
             ++   ++PD     IL++ + KE  V  AK   G M++  G  PD V  Y+S LI + 
Sbjct: 276 DEMMKMGMRPDLQMLNILVDAFCKEGKVMQAKSVIGFMIL-TGEGPD-VFTYNS-LIHIY 332

Query: 253 KGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD 312
              + + E +     M+ RG  P +  F          +N+  A  +   M  ++GF PD
Sbjct: 333 CLQNKMNEAMRVFHLMVSRGRLPDIVVFTSLIHGWCKDKNINKAMHLLEEM-SKMGFVPD 391

Query: 313 THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFN 372
              +  +I  +C +    AA +L   M   G  P++QT  ++ + L K   L EA  L  
Sbjct: 392 VATWTTLIGGFCQAGRPLAAKELFLNMHKYGQVPNLQTCAVILDGLCKENLLSEAVSLAK 451

Query: 373 EMVKNENVLN-------------HENCRAAVRVYMDSDDPYVAIKFWKYMI--------- 410
            M K+   LN                  AA  ++       + I  + Y I         
Sbjct: 452 AMEKSNLDLNIVIYSILLDGMCSAGKLNAAWELFSSLPGKGLQINVYIYTIMIKGLCKQG 511

Query: 411 -------------ENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQV 451
                        EN C   + T N+ V GL     +  ++KY   M +KG  V
Sbjct: 512 SLDKAEDLLINMEENGCLPNNCTYNVFVQGLLTKKEIARSIKYLTIMRDKGFSV 565



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 59/269 (21%), Positives = 110/269 (40%), Gaps = 19/269 (7%)

Query: 109 DLLGKNCLFDAMWDAIKSMKKENVLSLA----------TFASVFSSYVVADRVKDAITTF 158
           DL   N L DA     K M+ ++V+             T+ S+   Y + +++ +A+  F
Sbjct: 286 DLQMLNILVDAFCKEGKVMQAKSVIGFMILTGEGPDVFTYNSLIHIYCLQNKMNEAMRVF 345

Query: 159 DVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKE 217
            +M   G   D+    SL+   C+D     A   L  +      PD  T+  L+ G+ + 
Sbjct: 346 HLMVSRGRLPDIVVFTSLIHGWCKDKNINKAMHLLEEMSKMGFVPDVATWTTLIGGFCQA 405

Query: 218 RDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC--DGIYETVNSLKRMMERGCNP 275
                AK+ F  M          VP   +  + L   C  + + E V+  K M +   + 
Sbjct: 406 GRPLAAKELFLNM-----HKYGQVPNLQTCAVILDGLCKENLLSEAVSLAKAMEKSNLDL 460

Query: 276 GMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKL 335
            +  + +  +   +   L  A  ++ ++ G+ G + + ++Y +MI   C       A  L
Sbjct: 461 NIVIYSILLDGMCSAGKLNAAWELFSSLPGK-GLQINVYIYTIMIKGLCKQGSLDKAEDL 519

Query: 336 LDEMVYNGAFPDIQTYNILFEFLVKGRKL 364
           L  M  NG  P+  TYN+  + L+  +++
Sbjct: 520 LINMEENGCLPNNCTYNVFVQGLLTKKEI 548


>gi|357151724|ref|XP_003575883.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Brachypodium distachyon]
          Length = 757

 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 82/323 (25%), Positives = 139/323 (43%), Gaps = 21/323 (6%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-- 194
           TF ++   +V    ++ A+     M + GC      +N L++  C+ G+  DA  +++  
Sbjct: 233 TFTTLMEGFVEEGSIEAALRLKARMSEMGCSPTSVTVNVLINGYCKLGRVGDALGYIQQE 292

Query: 195 VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG 254
           + DG  +PD  T++  + G  +   V +A K  G M+ E G +PD V  Y S +I  L  
Sbjct: 293 IADG-FEPDRVTFSTFVNGLCQNGHVDHALKVLGLMLQE-GCEPD-VYTY-STVINCLCN 348

Query: 255 CDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTH 314
              + E    + +M++ GC P  T F        T   L  A  +   +  + G  P+ +
Sbjct: 349 NGELEEAKGIVNQMVDSGCLPDTTTFNTLIVALCTENQLEEALDLARELTVK-GLSPNVY 407

Query: 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
            +N++I+  C   +   A++L +EM  +G  PD  TYNIL + L    KL +A  L  EM
Sbjct: 408 TFNILINALCKVGDPHLAVRLFEEMKSSGCTPDEVTYNILIDNLCSSGKLAKALDLLKEM 467

Query: 375 VKNENVLNHENCRAAVRVYMDSDDPYV-------AIKFWKYMIENHCSDLSETGNLLVAG 427
                      C  +   Y    D          A + +  M        + T N L+ G
Sbjct: 468 -------EVSGCPQSTVTYNTIIDGLCKRRRIEEAEEVFDQMDVTGIGRNAITFNTLIDG 520

Query: 428 LCDMHMLPEAVKYAKGMAEKGIQ 450
           LC+   + +A +    M  +G+Q
Sbjct: 521 LCNAERIDDAAELVDQMISEGLQ 543



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 90/405 (22%), Positives = 163/405 (40%), Gaps = 12/405 (2%)

Query: 68  ETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSM 127
           ET    L   +   G      R  A       SP +  + V L+   C    + DA+  +
Sbjct: 231 ETTFTTLMEGFVEEGSIEAALRLKARMSEMGCSPTSVTVNV-LINGYCKLGRVGDALGYI 289

Query: 128 KKENVLSLATFASVFSSYVVA----DRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRD 183
           ++E           FS++V        V  A+    +M Q GC+ DV+  +++++ +C +
Sbjct: 290 QQEIADGFEPDRVTFSTFVNGLCQNGHVDHALKVLGLMLQEGCEPDVYTYSTVINCLCNN 349

Query: 184 GKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVP 242
           G+  +A   + ++VD    PD  T+  L+     E  +  A     E+ ++ G  P NV 
Sbjct: 350 GELEEAKGIVNQMVDSGCLPDTTTFNTLIVALCTENQLEEALDLARELTVK-GLSP-NVY 407

Query: 243 AYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEE-CLTGQNLRGAEFIWG 301
            ++  +  L K  D  +  V   + M   GC P    + +  +  C +G+  +  + +  
Sbjct: 408 TFNILINALCKVGDP-HLAVRLFEEMKSSGCTPDEVTYNILIDNLCSSGKLAKALDLLKE 466

Query: 302 AMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKG 361
             V   G    T  YN +I   C       A ++ D+M   G   +  T+N L + L   
Sbjct: 467 MEVS--GCPQSTVTYNTIIDGLCKRRRIEEAEEVFDQMDVTGIGRNAITFNTLIDGLCNA 524

Query: 362 RKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETG 421
            ++ +A+ L ++M+      N+    + +  Y    +   A    + M  N       T 
Sbjct: 525 ERIDDAAELVDQMISEGLQPNNVTYNSILTHYCKQGNISKAADILQTMTANGFEVDVVTY 584

Query: 422 NLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKA 466
             L+ GLC       A+K  +GM  KG++ TP A + + Q L + 
Sbjct: 585 ATLINGLCKARRTQAALKLLRGMRMKGMKPTPKAYNPVIQSLFRG 629



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 103/460 (22%), Positives = 181/460 (39%), Gaps = 62/460 (13%)

Query: 67  QETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPY--AWNLVVDLLGKNCLFDAMWDAI 124
           QE +   L+   + P  A++    SA   +D  +P    +  ++  LG    FD M   +
Sbjct: 56  QERLVTALR-EQADPEAALRMLN-SALARDDGLTPSRDVYEEIIRKLGTAGAFDLMKVLV 113

Query: 125 KSMKKE-NVLSLATFASVFSSYVVADRVKDAITTFDV----MEQYGCKHDVFALNSLLSA 179
             M++E + + L    S   SY       DA   FD+    ++ +G + +    N LL+ 
Sbjct: 114 GEMRREGHEVGLGLVQSFIGSYARLQLFDDA---FDLVSNQLDMFGVQANTEVYNHLLTV 170

Query: 180 ICRDGKTIDAWQ--FLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWD 237
           +  +G  I   +  +  +    I+PD  T+  +++   + R    A     EM       
Sbjct: 171 LA-EGSKIKLLESAYTEMSSQGIEPDVVTFNTVIDALCRARQARTAVLMLEEM------S 223

Query: 238 PDNVPAYDSYLITLLKGC--DGIYETVNSLK-RMMERGCNP-GMTFFKLAFEECLTGQNL 293
             +V   ++   TL++G   +G  E    LK RM E GC+P  +T   L    C  G+  
Sbjct: 224 SCDVAPDETTFTTLMEGFVEEGSIEAALRLKARMSEMGCSPTSVTVNVLINGYCKLGRVG 283

Query: 294 RGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNI 353
               +I   +    GF PD   ++  ++  C +     A+K+L  M+  G  PD+ TY+ 
Sbjct: 284 DALGYIQQEIAD--GFEPDRVTFSTFVNGLCQNGHVDHALKVLGLMLQEGCEPDVYTYST 341

Query: 354 LFEFLVKGRKLWEASGLFNEMVKN------------------ENVL-------------- 381
           +   L    +L EA G+ N+MV +                  EN L              
Sbjct: 342 VINCLCNNGELEEAKGIVNQMVDSGCLPDTTTFNTLIVALCTENQLEEALDLARELTVKG 401

Query: 382 ---NHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAV 438
              N       +       DP++A++ ++ M  + C+    T N+L+  LC    L +A+
Sbjct: 402 LSPNVYTFNILINALCKVGDPHLAVRLFEEMKSSGCTPDEVTYNILIDNLCSSGKLAKAL 461

Query: 439 KYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKK 478
              K M   G   +    + +   L K R+    EE+  +
Sbjct: 462 DLLKEMEVSGCPQSTVTYNTIIDGLCKRRRIEEAEEVFDQ 501



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 73/274 (26%), Positives = 122/274 (44%), Gaps = 9/274 (3%)

Query: 106 LVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYG 165
           L+V L  +N L +A+  A +   K    ++ TF  + ++         A+  F+ M+  G
Sbjct: 377 LIVALCTENQLEEALDLARELTVKGLSPNVYTFNILINALCKVGDPHLAVRLFEEMKSSG 436

Query: 166 CKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDND-TYAILLEGWEKERDVANAK 224
           C  D    N L+  +C  GK   A   L+ ++    P +  TY  +++G  K R +  A+
Sbjct: 437 CTPDEVTYNILIDNLCSSGKLAKALDLLKEMEVSGCPQSTVTYNTIIDGLCKRRRIEEAE 496

Query: 225 KTFGEM-VIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPG-MTFFKL 282
           + F +M V  +G    N   +++ LI  L   + I +    + +M+  G  P  +T+  +
Sbjct: 497 EVFDQMDVTGIGR---NAITFNT-LIDGLCNAERIDDAAELVDQMISEGLQPNNVTYNSI 552

Query: 283 AFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYN 342
               C  G N+  A  I   M    GF  D   Y  +I+  C +  T AA+KLL  M   
Sbjct: 553 LTHYCKQG-NISKAADILQTMTAN-GFEVDVVTYATLINGLCKARRTQAALKLLRGMRMK 610

Query: 343 GAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK 376
           G  P  + YN + + L +G    +A  LF EM +
Sbjct: 611 GMKPTPKAYNPVIQSLFRGNNGRDALSLFREMTE 644


>gi|242096872|ref|XP_002438926.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
 gi|241917149|gb|EER90293.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
          Length = 924

 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 85/326 (26%), Positives = 143/326 (43%), Gaps = 9/326 (2%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           T++++  +Y     ++ A    + M + GC  +V   N+L+  +CR G   +A+ + + +
Sbjct: 245 TYSTLIEAYCKVRDLESAKKVVEEMRETGCSLNVVTYNTLIGGLCRAGAIEEAFGYKKEM 304

Query: 197 -DGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
            D  + PD  TY  ++ G  K      AK    EM    G  P NV  Y + +   ++  
Sbjct: 305 EDYGLVPDGFTYGAIINGLCKRGRPDQAKCLLDEMSC-AGLMP-NVVVYSTLIDGFMRQG 362

Query: 256 DGIYETVNSLKRMMERGCNPG-MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTH 314
           +   E    +K M   G  P  +T+  L    C  G+  R +  +    + +IG+  DT 
Sbjct: 363 NA-DEAFKIVKEMSAAGVQPNKITYDNLIRGLCKLGRMGRASRIL--KQMTKIGYMADTM 419

Query: 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
            YN++I  +   +    A  LL+EM   G  P++ TY+I+   L +  +   ASGL  +M
Sbjct: 420 TYNLVIEGHLRQHNKEEAFLLLNEMRKGGISPNVYTYSIIINGLCQIGESERASGLLEQM 479

Query: 375 VKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMI-ENHCSDLSETGNLLVAGLCDMHM 433
           + +    N       +  Y       +A +  K M  EN   DL    N L+ GL ++  
Sbjct: 480 IADGLKPNAFVYAPLISGYCREGSFSLACETLKKMTRENLTPDLY-CYNSLIIGLSNVGK 538

Query: 434 LPEAVKYAKGMAEKGIQVTPFALSKL 459
           + EA++Y   M EKG Q   F    L
Sbjct: 539 MDEAIEYYDEMLEKGFQPNDFTYGGL 564



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 69/316 (21%), Positives = 139/316 (43%), Gaps = 5/316 (1%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RV 195
            +A + S Y        A  T   M +     D++  NSL+  +   GK  +A ++   +
Sbjct: 490 VYAPLISGYCREGSFSLACETLKKMTRENLTPDLYCYNSLIIGLSNVGKMDEAIEYYDEM 549

Query: 196 VDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
           ++   +P++ TY  L+ G+    ++  A++   +M +  G +P++   Y   L    K  
Sbjct: 550 LEKGFQPNDFTYGGLIHGYSMAGNLEKAEQLLHQM-LNSGLNPNDF-IYAQILEGYFKS- 606

Query: 256 DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHM 315
           D + +  ++LK M+E+G  P    + +      +  +++ A  +  +++ + G  PD+ +
Sbjct: 607 DNLEKVSSTLKSMLEKGLMPDNRLYGIVIHNLSSSGHMQAAVSVL-SVIEKNGLVPDSLI 665

Query: 316 YNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
           Y  +IS +C + +   A+ LLDEM   G  P I  YN L +   K   +  A  +FN ++
Sbjct: 666 YGSLISGFCKAADMEKAVGLLDEMAKKGIEPGISCYNALIDGFCKSDDISHARNIFNSII 725

Query: 376 KNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLP 435
                 N       +  Y  + D   AI  +  M+    +  +   ++L AG  +   L 
Sbjct: 726 CKGLPPNCVTYTTLIDGYCKAGDIRDAIDLYNEMLTEGVAPDAFVYSVLAAGCSNSGDLQ 785

Query: 436 EAVKYAKGMAEKGIQV 451
           +A+   + M  +G  +
Sbjct: 786 QALFITEEMIARGYAI 801


>gi|296088147|emb|CBI35592.3| unnamed protein product [Vitis vinifera]
          Length = 883

 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 90/377 (23%), Positives = 149/377 (39%), Gaps = 57/377 (15%)

Query: 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDV 160
           + + +++D L +    +      + M K  +   + TF ++ + Y     V  A     V
Sbjct: 336 HTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSV 395

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERD 219
           ME+  CK ++   N L+  +CR  K+  A+  L RVVD  + PD  TY IL++G+ KE  
Sbjct: 396 MEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQ 455

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTF 279
           +  A   F  M    G +PD                                    G TF
Sbjct: 456 LNMAFNIFNSMN-SAGLEPD------------------------------------GFTF 478

Query: 280 FKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEM 339
             L    C  G+ L  A  I G+MV + G   D   +  +I  +C   +      L + M
Sbjct: 479 TALIDGLCKLGR-LEQANGILGSMVKK-GISLDEVTFTALIDGHCKIGKAKDVCFLFENM 536

Query: 340 VYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK--------NENVLNHENCRAAVR 391
           V N       T+N   + L K  KL EA+ +  +M+K           +L   +CRA   
Sbjct: 537 VENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAG-- 594

Query: 392 VYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQV 451
                 +  +++K  + M +  CS    T  +++ GLC+   + EA      M+  G+  
Sbjct: 595 ------ETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSP 648

Query: 452 TPFALSKLKQILIKARK 468
             F  + L +  +KA +
Sbjct: 649 NHFTYAVLVKAHVKAGR 665



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 114/243 (46%), Gaps = 16/243 (6%)

Query: 141 VFSSYVVA----DRVKDAITTFDVM-EQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR- 194
           V +S V+A    D + +A   F+ M ++  C+ +    + L+  +C  G+  +A+Q  + 
Sbjct: 231 VCTSLVLANCRRDDLGEAFRVFEKMSKEENCRPNSVTYSILIHGLCEAGRLEEAFQLKQE 290

Query: 195 VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG 254
           +V+   +P   TY +L++          A K   EM  +       VP   +Y I + + 
Sbjct: 291 MVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKAC-----VPNVHTYTILIDRL 345

Query: 255 C-DGIYETVNSL-KRMMERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRP 311
           C +G  E  N + ++M++ G  PG+ TF  L    C  G  +   + +  +++ +   +P
Sbjct: 346 CREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLL--SVMEKGNCKP 403

Query: 312 DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLF 371
           +   YN ++   C  +++  A  LL  +V NG  PD  TYNIL +   K  +L  A  +F
Sbjct: 404 NIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIF 463

Query: 372 NEM 374
           N M
Sbjct: 464 NSM 466



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 92/426 (21%), Positives = 156/426 (36%), Gaps = 68/426 (15%)

Query: 84  AVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFS 143
            V+FF+W   Q     S Y ++L           D     +  +   ++  +A  A V  
Sbjct: 86  GVRFFKWVCRQ-----SSYCYDL-----------DGRIQLLGVLVSRDLFGVAQKAVVLL 129

Query: 144 SYVVADR---VKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGR 199
                D    V   +   D M + G +      ++LL  + +      A+  + R+V+  
Sbjct: 130 IQECEDSENGVVKLMGALDGMTELGFRLSYPCYSTLLMCLAKLNMGFVAFLVYRRMVNEG 189

Query: 200 IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLIT--LLKGC-- 255
                  Y  ++    K   V  A + F   V+ +G+        D+++ T  +L  C  
Sbjct: 190 FVLGGIDYRTVVNALCKNGFV-QAAEMFCCKVLRLGF------GLDTHVCTSLVLANCRR 242

Query: 256 DGIYETVNSLKRMM-ERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTH 314
           D + E     ++M  E  C P    + +          L  A  +   MV + G +P T 
Sbjct: 243 DDLGEAFRVFEKMSKEENCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEK-GCQPSTR 301

Query: 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
            Y ++I   C    T  AMK+LDEM      P++ TY IL + L +  K+ EA+G+F +M
Sbjct: 302 TYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKM 361

Query: 375 VKNE----------------------------NVLNHENCRAAVRVYMD-------SDDP 399
           +K+                             +V+   NC+  +R Y +           
Sbjct: 362 LKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKS 421

Query: 400 YVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKL 459
           Y A    + +++N       T N+LV G C    L  A      M   G++   F  + L
Sbjct: 422 YKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTAL 481

Query: 460 KQILIK 465
              L K
Sbjct: 482 IDGLCK 487



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 69/298 (23%), Positives = 119/298 (39%), Gaps = 26/298 (8%)

Query: 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASVFSSYVVADRVKDAITTFDV 160
           + +  ++D L K    +     + SM K+ + L   TF ++   +    + KD    F+ 
Sbjct: 476 FTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFEN 535

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERD 219
           M +  C       N  L A+ +D K  +A   L +++   + P   T+ IL+EG  +  +
Sbjct: 536 MVENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGE 595

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTF 279
            A + K   E + + G  P NV  Y + +I  L     + E    L  M   G +P    
Sbjct: 596 TALSLKML-ERMKQAGCSP-NVYTY-TIIINGLCNNGRVEEAETILFSMSSFGVSPNHFT 652

Query: 280 FKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKL---- 335
           + +  +  +    L  A  I   MV + G +P++H+Y+ ++S +  SN    A  L    
Sbjct: 653 YAVLVKAHVKAGRLDRAFQIVSTMV-KNGCQPNSHIYSALLSGFVLSNTAIGARALSSTG 711

Query: 336 ----------------LDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKN 377
                           L   +     P    YN L   L K  ++ EA  L  +MVK+
Sbjct: 712 DLDARSLSSEENDNNCLSNEIKKCGVPTEDLYNFLVVGLCKEGRIIEADQLTQDMVKH 769



 Score = 43.1 bits (100), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 79/189 (41%), Gaps = 9/189 (4%)

Query: 282 LAFEECLTGQNLRGAEFIWGAMVG--RIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEM 339
           L  +EC   +N  G   + GA+ G   +GFR     Y+ ++      N    A  +   M
Sbjct: 128 LLIQECEDSEN--GVVKLMGALDGMTELGFRLSYPCYSTLLMCLAKLNMGFVAFLVYRRM 185

Query: 340 VYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDP 399
           V  G       Y  +   L K   +  A     ++++    L+   C + V      DD 
Sbjct: 186 VNEGFVLGGIDYRTVVNALCKNGFVQAAEMFCCKVLRLGFGLDTHVCTSLVLANCRRDDL 245

Query: 400 YVAIK-FWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSK 458
             A + F K   E +C   S T ++L+ GLC+   L EA +  + M EKG Q +    ++
Sbjct: 246 GEAFRVFEKMSKEENCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPS----TR 301

Query: 459 LKQILIKAR 467
              +LIKA+
Sbjct: 302 TYTVLIKAK 310


>gi|15218325|ref|NP_172461.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122215618|sp|Q3EDF8.1|PPR28_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09900
 gi|332190391|gb|AEE28512.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 598

 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 80/336 (23%), Positives = 148/336 (44%), Gaps = 42/336 (12%)

Query: 138 FASVFSSYVVAD-----RVKDAITTFDVMEQY---------GCKHDVFALNSLLSAICRD 183
           ++SV SS+ + D      ++  + T ++ E +         G   D+    +L+   CR 
Sbjct: 91  YSSVNSSFALEDVESNNHLRQMVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRL 150

Query: 184 GKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVP 242
           GKT  A + L +++G    PD  TY +++ G+ K  ++ NA      M +     PD V 
Sbjct: 151 GKTRKAAKILEILEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRMSV----SPD-VV 205

Query: 243 AYDSYLITLLKGCDG--IYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIW 300
            Y++ L +L   CD   + + +  L RM++R C P +  + +  E       +  A  + 
Sbjct: 206 TYNTILRSL---CDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLL 262

Query: 301 GAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVK 360
             M  R G  PD   YN++++  C       A+K L++M  +G  P++ T+NI+   +  
Sbjct: 263 DEMRDR-GCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCS 321

Query: 361 GRKLWEASGLFNEMVKNE--------NVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIEN 412
             +  +A  L  +M++          N+L +  CR  +           AI   + M ++
Sbjct: 322 TGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGR--------AIDILEKMPQH 373

Query: 413 HCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448
            C   S + N L+ G C    +  A++Y + M  +G
Sbjct: 374 GCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRG 409



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 93/377 (24%), Positives = 150/377 (39%), Gaps = 61/377 (16%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RV 195
           T+  + S Y  A  + +A++  D M       DV   N++L ++C  GK   A + L R+
Sbjct: 174 TYNVMISGYCKAGEINNALSVLDRMS---VSPDVVTYNTILRSLCDSGKLKQAMEVLDRM 230

Query: 196 VDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
           +     PD  TY IL+E   ++  V +A K   EM  + G  PD V  Y+  +  + K  
Sbjct: 231 LQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMR-DRGCTPD-VVTYNVLVNGICK-- 286

Query: 256 DG-IYETVNSLKRMMERGCNPGMTFFKLAFEE-CLTGQNLRGAEFIWGAMVGRIGFRPDT 313
           +G + E +  L  M   GC P +    +     C TG+ +  AE +   M+ R GF P  
Sbjct: 287 EGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWM-DAEKLLADML-RKGFSPSV 344

Query: 314 HMYNMMISLYCYSNETGAAMKLLDEM---------------------------------- 339
             +N++I+  C     G A+ +L++M                                  
Sbjct: 345 VTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLER 404

Query: 340 -VYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDD 398
            V  G +PDI TYN +   L K  K+ +A  + N+       L+ + C   +  Y    D
Sbjct: 405 MVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQ-------LSSKGCSPVLITYNTVID 457

Query: 399 PYV-------AIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQV 451
                     AIK    M        + T + LV GL     + EA+K+       GI+ 
Sbjct: 458 GLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRP 517

Query: 452 TPFALSKLKQILIKARK 468
                + +   L K+R+
Sbjct: 518 NAVTFNSIMLGLCKSRQ 534



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 85/338 (25%), Positives = 141/338 (41%), Gaps = 46/338 (13%)

Query: 151 VKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYAI 209
           V  A+   D M   GC  DV   N L++ IC++G+  +A +FL  +     +P+  T+ I
Sbjct: 255 VGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNI 314

Query: 210 LLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL--KGCDGIYETVNSLKR 267
           +L          +A+K   +M +  G+ P  V    + LI  L  KG  G    ++ L++
Sbjct: 315 ILRSMCSTGRWMDAEKLLADM-LRKGFSPSVVTF--NILINFLCRKGLLG--RAIDILEK 369

Query: 268 MMERGCNP-GMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYS 326
           M + GC P  +++  L    C   +  R  E++   MV R G  PD   YN M++  C  
Sbjct: 370 MPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLE-RMVSR-GCYPDIVTYNTMLTALCKD 427

Query: 327 NETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM------------ 374
            +   A+++L+++   G  P + TYN + + L K  K  +A  L +EM            
Sbjct: 428 GKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITY 487

Query: 375 ------VKNENVLN------HENCRAAVR-----------VYMDSDDPYVAIKFWKYMIE 411
                 +  E  ++      HE  R  +R               S     AI F  +MI 
Sbjct: 488 SSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMIN 547

Query: 412 NHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
             C     +  +L+ GL    M  EA++    +  KG+
Sbjct: 548 RGCKPNETSYTILIEGLAYEGMAKEALELLNELCNKGL 585



 Score = 44.3 bits (103), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 64/142 (45%), Gaps = 5/142 (3%)

Query: 94  QLNDKH-SPY--AWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVAD 149
           QL+ K  SP    +N V+D L K          +  M+ +++     T++S+        
Sbjct: 439 QLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREG 498

Query: 150 RVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYA 208
           +V +AI  F   E+ G + +    NS++  +C+  +T  A  FL  +  R  KP+  +Y 
Sbjct: 499 KVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYT 558

Query: 209 ILLEGWEKERDVANAKKTFGEM 230
           IL+EG   E     A +   E+
Sbjct: 559 ILIEGLAYEGMAKEALELLNEL 580


>gi|255555231|ref|XP_002518652.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223542033|gb|EEF43577.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 827

 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 85/356 (23%), Positives = 155/356 (43%), Gaps = 17/356 (4%)

Query: 104 WNLVVDLLGKNCLFDAMWDAIKSMKKEN-VLSLATFASVFSSYVVADRVKDAITTFDVME 162
           WN ++ + G+N +   +    K MK+   V    TF ++ S+Y      + A+  +  M 
Sbjct: 466 WNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGSFQQAMAVYKRML 525

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQ-----FLRVVDGRIKPDNDTYAILLEGWEKE 217
           + G   D+ + N++L+A+ R G     W+     F  + DGR KP+  TY  LL  +   
Sbjct: 526 EAGVTPDLSSYNAVLAALARGG----LWEQSEKVFAEMKDGRCKPNELTYCSLLHAYANS 581

Query: 218 RDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGM 277
           +++     T  E +     +P  VP     L+ +   CD + ET ++ + + ++G +P +
Sbjct: 582 KEIERMH-TLAEEIYSGLTEP--VPVLLKTLVLVNSKCDLLMETEHAFEELKKKG-SPDL 637

Query: 278 TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLD 337
           +            Q +  A  I   M    GF P    YN ++ ++  S     + ++L 
Sbjct: 638 STLNAMIAIYGRRQMVAKANEILNFM-NESGFSPSLATYNSLMYMHSRSENFERSEEVLK 696

Query: 338 EMVYNGAFPDIQTYN-ILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDS 396
           E++  G  PD+ +YN ++F +   GR + +AS +F+ M     V +       V  Y   
Sbjct: 697 EILAKGLKPDLISYNTVIFAYCRNGR-MKDASRIFSYMKTYGLVPDVITYNTFVASYAAD 755

Query: 397 DDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVT 452
                AI   +YMI++ C     T N +V G C      +A+ +   + +    VT
Sbjct: 756 SLFEDAIGVVRYMIKHGCKRNQNTYNSIVDGYCKHSRRADAIMFVSSLNQLDPHVT 811



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 78/278 (28%), Positives = 123/278 (44%), Gaps = 12/278 (4%)

Query: 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDV 160
           Y +N ++    +  L++      + MK         TF ++   Y  + R K+A+     
Sbjct: 289 YTYNTLISCCRRGSLYEEAAQVFEEMKLSGFSPDKVTFNTLLDVYGKSRRPKEAMEVLKE 348

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERD 219
           ME  G    +   NSL+SA  RDG   +A +   ++V+  IKPD  TY  LL G+EK   
Sbjct: 349 MEFSGFSPSIVTYNSLISAYARDGLLREAMELKDQMVEKGIKPDVFTYTTLLSGFEKAGM 408

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTF 279
              A + FGEM    G  P N+  +++ LI +        E +   + +    C P +  
Sbjct: 409 DEPAMRIFGEMR-AAGCKP-NICTFNA-LIKMHGNRGRFAEMMKVFEEIEICNCAPDIVT 465

Query: 280 FKLAFEECLTGQNLRGAEFIWGAM--VGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLD 337
           +       + GQN   +E + G    + R GF P+   +N +IS Y        AM +  
Sbjct: 466 WNTLL--AVFGQNGMDSE-VSGVFKEMKRAGFVPERDTFNTLISAYSRCGSFQQAMAVYK 522

Query: 338 EMVYNGAFPDIQTYNILFEFLVKGRKLWEAS-GLFNEM 374
            M+  G  PD+ +YN +   L +G  LWE S  +F EM
Sbjct: 523 RMLEAGVTPDLSSYNAVLAALARG-GLWEQSEKVFAEM 559



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 72/275 (26%), Positives = 110/275 (40%), Gaps = 48/275 (17%)

Query: 106 LVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASVFSSYVVADRVKDAITTFDVMEQY 164
           +++ +LGK     A    + +++K+   L +  + S+ ++Y    R +DA+  F  ME+ 
Sbjct: 187 VIITMLGKEGKVSAASSILNNLRKDGFDLDVYAYTSLITAYASNGRYRDAVLVFKKMEEE 246

Query: 165 GCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGR----IKPDNDTYAILLEGWEKERD 219
           GCK  +   N +L+     GK    W  +  +V G     + PD+ TY  L+    +   
Sbjct: 247 GCKPTLITYNVILNVY---GKMGMPWSKISGLVHGMKSSGVAPDDYTYNTLISCCRRGSL 303

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTF 279
              A + F EM +  G+ PD V                   T N+L  +  +   P    
Sbjct: 304 YEEAAQVFEEMKLS-GFSPDKV-------------------TFNTLLDVYGKSRRP---- 339

Query: 280 FKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEM 339
            K A E       L+  EF         GF P    YN +IS Y        AM+L D+M
Sbjct: 340 -KEAMEV------LKEMEFS--------GFSPSIVTYNSLISAYARDGLLREAMELKDQM 384

Query: 340 VYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
           V  G  PD+ TY  L     K      A  +F EM
Sbjct: 385 VEKGIKPDVFTYTTLLSGFEKAGMDEPAMRIFGEM 419



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 62/257 (24%), Positives = 99/257 (38%), Gaps = 57/257 (22%)

Query: 130 ENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDA 189
           E+VL+ +  A + +      +V  A +  + + + G   DV+A  SL++A   +G+  DA
Sbjct: 177 ESVLNCSVVAVIITMLGKEGKVSAASSILNNLRKDGFDLDVYAYTSLITAYASNGRYRDA 236

Query: 190 -WQFLRVVDGRIKPDNDTYAILLE-------GWEKERDVANAKKTFGEMVIEVGWDPDNV 241
              F ++ +   KP   TY ++L         W K   + +  K+ G             
Sbjct: 237 VLVFKKMEEEGCKPTLITYNVILNVYGKMGMPWSKISGLVHGMKSSG------------- 283

Query: 242 PAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLA--FEECLTGQNLRGAEFI 299
            A D Y    L  C                 C  G  + + A  FEE             
Sbjct: 284 VAPDDYTYNTLISC-----------------CRRGSLYEEAAQVFEEMKLS--------- 317

Query: 300 WGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLV 359
                   GF PD   +N ++ +Y  S     AM++L EM ++G  P I TYN L     
Sbjct: 318 --------GFSPDKVTFNTLLDVYGKSRRPKEAMEVLKEMEFSGFSPSIVTYNSLISAYA 369

Query: 360 KGRKLWEASGLFNEMVK 376
           +   L EA  L ++MV+
Sbjct: 370 RDGLLREAMELKDQMVE 386


>gi|449481246|ref|XP_004156125.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At2g02150-like [Cucumis
           sativus]
          Length = 822

 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 110/459 (23%), Positives = 183/459 (39%), Gaps = 62/459 (13%)

Query: 70  VEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIK---- 125
           V ++L      P  A+KFF+W+  Q+  +H+  ++ ++V L+ +  ++    D +K    
Sbjct: 73  VSKILLGLREDPKLALKFFKWAGSQVGFRHTTESYCIIVHLVFRARMYTDAHDTVKEVIM 132

Query: 126 ------------------SMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCK 167
                             S +   V     F  +FS +V    +++A   F  M  +   
Sbjct: 133 NSRMDMGFPVCNIFDMLWSTRNICVSGSGVFDVLFSVFVELGLLEEANECFSRMRNFRTL 192

Query: 168 HDVFALNSLLSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYAILLEGWEKERDVANAKKT 226
               + N LL  + + G      +F   ++   I P   TY ++++   KE D+ N+++ 
Sbjct: 193 PKARSCNFLLHRLSKSGNGQLVRKFFNDMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRL 252

Query: 227 FGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMT-------- 278
           F +M  E+G  PD V  Y+S LI        + E  +    M + GC P +         
Sbjct: 253 FVQMR-EMGLSPD-VVTYNS-LIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINC 309

Query: 279 ---FFKL--AFE------------ECLTGQNLRGAEFIWGAMVG---------RIGFRPD 312
              F K+  AFE              +T   L  A    G M G         R G  P+
Sbjct: 310 YCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLLXDMRRTGLLPN 369

Query: 313 THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFN 372
              Y  +I   C +     A KLL++M+  G   +I TY  L + L K  ++ EA  +F 
Sbjct: 370 EFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFR 429

Query: 373 EMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIE-NHCSDLSETGNLLVAGLCDM 431
            M+K+    N +   A V  Y+ ++    A+K  K M E N   DL   G+ ++ G C  
Sbjct: 430 SMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGS-IIWGHCSQ 488

Query: 432 HMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEA 470
             L E     + M  +GI   P   + +     KA K +
Sbjct: 489 RKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSS 527



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 81/378 (21%), Positives = 154/378 (40%), Gaps = 6/378 (1%)

Query: 75  KFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL- 133
           + S S  G  V+ F           S + +N+++D L K    +        M++  +  
Sbjct: 204 RLSKSGNGQLVRKFFNDMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSP 263

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-F 192
            + T+ S+   Y     +++  + F+ M+  GC  D+   N L++  C+  K   A++ F
Sbjct: 264 DVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYF 323

Query: 193 LRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
             + +  +KP+  TY+ L++ + KE  +  A K   +M    G  P+    Y S +    
Sbjct: 324 SEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLLXDMR-RTGLLPNEF-TYTSLIDANC 381

Query: 253 KGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD 312
           K  + + E    L  M++ G    +  +    +       +  AE ++ +M+ + G  P+
Sbjct: 382 KAGN-LTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSML-KDGISPN 439

Query: 313 THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFN 372
             +Y  ++  Y  +     AMK+L +M      PD+  Y  +       RKL E   +  
Sbjct: 440 QQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRKLEETKLILE 499

Query: 373 EMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMH 432
           EM       N       +  Y  +     A+ F++ M +        T  +L+ GLC+  
Sbjct: 500 EMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCEAG 559

Query: 433 MLPEAVKYAKGMAEKGIQ 450
           ++  AV Y   M   G+Q
Sbjct: 560 IVELAVDYFCRMLSLGLQ 577



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 82/353 (23%), Positives = 144/353 (40%), Gaps = 45/353 (12%)

Query: 98  KHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAIT 156
           K +   ++ ++D   K  +       +  M++  +L +  T+ S+  +   A  + +A  
Sbjct: 332 KPNVVTYSTLIDAFCKEGMMQGAIKLLXDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWK 391

Query: 157 TFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV--DGRIKPDNDTYAILLEGW 214
             + M Q G K ++    +LL  +C+ G+ I+A +  R +  DG I P+   Y  L+ G+
Sbjct: 392 LLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDG-ISPNQQVYTALVHGY 450

Query: 215 EKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDG--IYETVNSLKRMMERG 272
            K   + +A K   +M  E    PD +     Y   +   C    + ET   L+ M  RG
Sbjct: 451 IKAERMEDAMKILKQMT-ECNIKPDLIL----YGSIIWGHCSQRKLEETKLILEEMKSRG 505

Query: 273 --CNPGMT------FFKLA--------FEE-------------CLTGQNLRGAEFIWGAM 303
              NP ++      +FK          F+E             C+    L  A  +  A+
Sbjct: 506 ISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCEAGIVELAV 565

Query: 304 -----VGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFL 358
                +  +G +P+  +Y  +I   C +N   +A KL DEM   G  PDI  +  L +  
Sbjct: 566 DYFCRMLSLGLQPNVAVYTSLIDGLCXNNCIESAKKLFDEMQCRGMTPDITAFTALIDGN 625

Query: 359 VKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIE 411
           +K   L EA  L + M +     +     + V  +    + + A KF+  MIE
Sbjct: 626 LKHGNLQEALVLISRMTELAIEFDLHVYTSLVSGFSQCGELHQARKFFNEMIE 678



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 66/263 (25%), Positives = 114/263 (43%), Gaps = 11/263 (4%)

Query: 118 DAMWDAIKSMKKENVLS----LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFAL 173
           + M DA+K +K+    +    L  + S+   +    ++++     + M+  G   +    
Sbjct: 454 ERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGISANPVIS 513

Query: 174 NSLLSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVI 232
            +++ A  + GK+ DA  F + + D  ++    TY +L++G  +   V  A   F  M +
Sbjct: 514 TTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCEAGIVELAVDYFCRM-L 572

Query: 233 EVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQN 292
            +G  P NV  Y S LI  L   + I         M  RG  P +T F    +  L   N
Sbjct: 573 SLGLQP-NVAVYTS-LIDGLCXNNCIESAKKLFDEMQCRGMTPDITAFTALIDGNLKHGN 630

Query: 293 LRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFP-DIQTY 351
           L+ A  +   M   +    D H+Y  ++S +    E   A K  +EM+  G  P ++   
Sbjct: 631 LQEALVLISRMT-ELAIEFDLHVYTSLVSGFSQCGELHQARKFFNEMIEKGILPEEVLCI 689

Query: 352 NILFEFLVKGRKLWEASGLFNEM 374
            +L E+  +G +L EA  L NEM
Sbjct: 690 CLLREYYKRG-QLDEAIELKNEM 711


>gi|359494794|ref|XP_002267896.2| PREDICTED: pentatricopeptide repeat-containing protein At3g07290,
           mitochondrial [Vitis vinifera]
          Length = 876

 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 90/377 (23%), Positives = 149/377 (39%), Gaps = 57/377 (15%)

Query: 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDV 160
           + + +++D L +    +      + M K  +   + TF ++ + Y     V  A     V
Sbjct: 313 HTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSV 372

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERD 219
           ME+  CK ++   N L+  +CR  K+  A+  L RVVD  + PD  TY IL++G+ KE  
Sbjct: 373 MEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQ 432

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTF 279
           +  A   F  M    G +PD                                    G TF
Sbjct: 433 LNMAFNIFNSMN-SAGLEPD------------------------------------GFTF 455

Query: 280 FKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEM 339
             L    C  G+ L  A  I G+MV + G   D   +  +I  +C   +      L + M
Sbjct: 456 TALIDGLCKLGR-LEQANGILGSMVKK-GISLDEVTFTALIDGHCKIGKAKDVCFLFENM 513

Query: 340 VYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK--------NENVLNHENCRAAVR 391
           V N       T+N   + L K  KL EA+ +  +M+K           +L   +CRA   
Sbjct: 514 VENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAG-- 571

Query: 392 VYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQV 451
                 +  +++K  + M +  CS    T  +++ GLC+   + EA      M+  G+  
Sbjct: 572 ------ETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSP 625

Query: 452 TPFALSKLKQILIKARK 468
             F  + L +  +KA +
Sbjct: 626 NHFTYAVLVKAHVKAGR 642



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 114/243 (46%), Gaps = 16/243 (6%)

Query: 141 VFSSYVVA----DRVKDAITTFDVM-EQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR- 194
           V +S V+A    D + +A   F+ M ++  C+ +    + L+  +C  G+  +A+Q  + 
Sbjct: 208 VCTSLVLANCRRDDLGEAFRVFEKMSKEENCRPNSVTYSILIHGLCEAGRLEEAFQLKQE 267

Query: 195 VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG 254
           +V+   +P   TY +L++          A K   EM  +       VP   +Y I + + 
Sbjct: 268 MVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKAC-----VPNVHTYTILIDRL 322

Query: 255 C-DGIYETVNSL-KRMMERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRP 311
           C +G  E  N + ++M++ G  PG+ TF  L    C  G  +   + +  +++ +   +P
Sbjct: 323 CREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLL--SVMEKGNCKP 380

Query: 312 DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLF 371
           +   YN ++   C  +++  A  LL  +V NG  PD  TYNIL +   K  +L  A  +F
Sbjct: 381 NIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIF 440

Query: 372 NEM 374
           N M
Sbjct: 441 NSM 443



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 92/426 (21%), Positives = 156/426 (36%), Gaps = 68/426 (15%)

Query: 84  AVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFS 143
            V+FF+W   Q     S Y ++L           D     +  +   ++  +A  A V  
Sbjct: 63  GVRFFKWVCRQ-----SSYCYDL-----------DGRIQLLGVLVSRDLFGVAQKAVVLL 106

Query: 144 SYVVADR---VKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGR 199
                D    V   +   D M + G +      ++LL  + +      A+  + R+V+  
Sbjct: 107 IQECEDSENGVVKLMGALDGMTELGFRLSYPCYSTLLMCLAKLNMGFVAFLVYRRMVNEG 166

Query: 200 IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLIT--LLKGC-- 255
                  Y  ++    K   V  A + F   V+ +G+        D+++ T  +L  C  
Sbjct: 167 FVLGGIDYRTVVNALCKNGFV-QAAEMFCCKVLRLGF------GLDTHVCTSLVLANCRR 219

Query: 256 DGIYETVNSLKRMM-ERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTH 314
           D + E     ++M  E  C P    + +          L  A  +   MV + G +P T 
Sbjct: 220 DDLGEAFRVFEKMSKEENCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEK-GCQPSTR 278

Query: 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
            Y ++I   C    T  AMK+LDEM      P++ TY IL + L +  K+ EA+G+F +M
Sbjct: 279 TYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKM 338

Query: 375 VKNE----------------------------NVLNHENCRAAVRVYMD-------SDDP 399
           +K+                             +V+   NC+  +R Y +           
Sbjct: 339 LKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKS 398

Query: 400 YVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKL 459
           Y A    + +++N       T N+LV G C    L  A      M   G++   F  + L
Sbjct: 399 YKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTAL 458

Query: 460 KQILIK 465
              L K
Sbjct: 459 IDGLCK 464



 Score = 47.4 bits (111), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 73/315 (23%), Positives = 125/315 (39%), Gaps = 44/315 (13%)

Query: 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASVFSSYVVADRVKDAITTFDV 160
           + +  ++D L K    +     + SM K+ + L   TF ++   +    + KD    F+ 
Sbjct: 453 FTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFEN 512

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERD 219
           M +  C       N  L A+ +D K  +A   L +++   + P   T+ IL+EG  +  +
Sbjct: 513 MVENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGE 572

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTF 279
            A + K   E + + G  P NV  Y + +I  L     + E    L  M   G +P    
Sbjct: 573 TALSLKML-ERMKQAGCSP-NVYTY-TIIINGLCNNGRVEEAETILFSMSSFGVSPNHFT 629

Query: 280 FKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNET-GA------- 331
           + +  +  +    L  A  I   MV + G +P++H+Y+ ++S +  SN   GA       
Sbjct: 630 YAVLVKAHVKAGRLDRAFQIVSTMV-KNGCQPNSHIYSALLSGFVLSNTAIGARALSSTG 688

Query: 332 -----------------------------AMKLLDEMVYNGAFPDIQTYNILFEFLVKGR 362
                                        A+K+ DE+   G  P    YN L   L K  
Sbjct: 689 DLDARSLSSEENDNNCLSSHVFRLMDVDHALKIRDEIKKCGV-PTEDLYNFLVVGLCKEG 747

Query: 363 KLWEASGLFNEMVKN 377
           ++ EA  L  +MVK+
Sbjct: 748 RIIEADQLTQDMVKH 762



 Score = 45.4 bits (106), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 59/265 (22%), Positives = 110/265 (41%), Gaps = 21/265 (7%)

Query: 100 SPYAWNLVVDLLGKNC-LFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTF 158
           + + +N  +D LGK+  L +A     K MK   V S+ T   +   +  A     ++   
Sbjct: 521 TAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKML 580

Query: 159 DVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDG-RIKPDNDTYAILLEGWEKE 217
           + M+Q GC  +V+    +++ +C +G+  +A   L  +    + P++ TYA+L++   K 
Sbjct: 581 ERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKA 640

Query: 218 RDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGM 277
             +  A +    MV + G  P N   Y + L   +     +  T    + +   G    +
Sbjct: 641 GRLDRAFQIVSTMV-KNGCQP-NSHIYSALLSGFV-----LSNTAIGARALSSTG---DL 690

Query: 278 TFFKLAFEE----CLTGQNLRGAEFIWGAM----VGRIGFRPDTHMYNMMISLYCYSNET 329
               L+ EE    CL+    R  +          + + G  P   +YN ++   C     
Sbjct: 691 DARSLSSEENDNNCLSSHVFRLMDVDHALKIRDEIKKCGV-PTEDLYNFLVVGLCKEGRI 749

Query: 330 GAAMKLLDEMVYNGAFPDIQTYNIL 354
             A +L  +MV +G FPD    +I+
Sbjct: 750 IEADQLTQDMVKHGLFPDKAISSII 774



 Score = 42.7 bits (99), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 79/189 (41%), Gaps = 9/189 (4%)

Query: 282 LAFEECLTGQNLRGAEFIWGAMVG--RIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEM 339
           L  +EC   +N  G   + GA+ G   +GFR     Y+ ++      N    A  +   M
Sbjct: 105 LLIQECEDSEN--GVVKLMGALDGMTELGFRLSYPCYSTLLMCLAKLNMGFVAFLVYRRM 162

Query: 340 VYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDP 399
           V  G       Y  +   L K   +  A     ++++    L+   C + V      DD 
Sbjct: 163 VNEGFVLGGIDYRTVVNALCKNGFVQAAEMFCCKVLRLGFGLDTHVCTSLVLANCRRDDL 222

Query: 400 YVAIK-FWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSK 458
             A + F K   E +C   S T ++L+ GLC+   L EA +  + M EKG Q +    ++
Sbjct: 223 GEAFRVFEKMSKEENCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPS----TR 278

Query: 459 LKQILIKAR 467
              +LIKA+
Sbjct: 279 TYTVLIKAK 287


>gi|225423589|ref|XP_002275605.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Vitis vinifera]
          Length = 644

 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 96/396 (24%), Positives = 175/396 (44%), Gaps = 20/396 (5%)

Query: 81  PGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWD------AIKSMKKENVLS 134
           P  A++ F     +   + +  ++N V++++ +  LF    +        K+    NVLS
Sbjct: 115 PEKAIELFGRMVDEFQCRRTVRSFNSVLNVIIQEGLFHRALEFYECGVGGKTNISPNVLS 174

Query: 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL- 193
                       + DR   AI  F  M    C+ DVF   +L+  +C++ +  +A   L 
Sbjct: 175 FNLVIKAMCKLGLVDR---AIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLLLD 231

Query: 194 -RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITL- 251
              ++G   P + T+ +L+ G  K+ D+    K    M ++ G  P+ V  Y++ +  L 
Sbjct: 232 EMQIEGCF-PSSVTFNVLINGLCKKGDMVRVTKLVDNMFLK-GCVPNEV-TYNTIINGLC 288

Query: 252 LKGCDGIYETVNSLKRMMERGCNPG-MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFR 310
           LKG   + + V+ L RM+   C P  +T+  L       G+++ G   +  + +   G  
Sbjct: 289 LKG--KLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLL--SSLEERGHH 344

Query: 311 PDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGL 370
            + + Y+ +IS      ++  AM L  +MV  G  P+I  Y+ L + L +  KL EA  +
Sbjct: 345 ANEYAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEI 404

Query: 371 FNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCD 430
             EMV      N     + ++ +  + +   AI+ WK M +N+C       ++L+ GLC+
Sbjct: 405 LCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCE 464

Query: 431 MHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKA 466
              L EA+     M  +G++    A S +   L  A
Sbjct: 465 DGKLREAMMMWTHMLGRGLRPDVVAYSSMIHGLCNA 500



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 68/251 (27%), Positives = 116/251 (46%), Gaps = 23/251 (9%)

Query: 136 ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDA---WQF 192
            T+ ++ +  V   R  D +     +E+ G   + +A ++L+S + ++ K+ +A   W+ 
Sbjct: 313 VTYGTLINGLVKQGRSVDGVHLLSSLEERGHHANEYAYSTLISGLFKEEKSEEAMGLWK- 371

Query: 193 LRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
            ++V+   +P+   Y+ L++G  +E  +  AK+   EMV + G  P N   Y S +    
Sbjct: 372 -KMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEMVNK-GCTP-NAFTYSSLI---- 424

Query: 253 KGCDGIYETVNSLK------RMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGR 306
               G ++T NS K       M +  C P    + +          LR A  +W  M+GR
Sbjct: 425 ---KGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCEDGKLREAMMMWTHMLGR 481

Query: 307 IGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVY--NGAFPDIQTYNILFEFLVKGRKL 364
            G RPD   Y+ MI   C +      +KL +EM+   + + PD+ TYNIL   L K   +
Sbjct: 482 -GLRPDVVAYSSMIHGLCNAGSVEVGLKLFNEMLCQESDSQPDVVTYNILLRALCKQNSI 540

Query: 365 WEASGLFNEMV 375
             A  L N M+
Sbjct: 541 SHAIDLLNSML 551



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 81/371 (21%), Positives = 150/371 (40%), Gaps = 13/371 (3%)

Query: 84  AVKFFRWSAYQLNDKHSP--YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFAS 140
           A++ FR  A Q   K  P  + +  ++D L K    D     +  M+ E    S  TF  
Sbjct: 191 AIEVFREMAIQ---KCEPDVFTYCTLMDGLCKEDRIDEAVLLLDEMQIEGCFPSSVTFNV 247

Query: 141 VFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGR 199
           + +       +       D M   GC  +    N++++ +C  GK   A   L R+V  +
Sbjct: 248 LINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLKGKLDKAVSLLDRMVASK 307

Query: 200 IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIY 259
             P++ TY  L+ G  K+    +       +  E      N  AY + +  L K  +   
Sbjct: 308 CVPNDVTYGTLINGLVKQGRSVDGVHLLSSL--EERGHHANEYAYSTLISGLFKE-EKSE 364

Query: 260 ETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMM 319
           E +   K+M+E+GC P +  +    +       L  A+ I   MV + G  P+   Y+ +
Sbjct: 365 EAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEMVNK-GCTPNAFTYSSL 423

Query: 320 ISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNEN 379
           I  +  +  +  A+++  EM  N   P+   Y++L   L +  KL EA  ++  M+    
Sbjct: 424 IKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCEDGKLREAMMMWTHMLGRGL 483

Query: 380 VLNHENCRAAVRVYMDSDDPYVAIKFWKYMI--ENHCSDLSETGNLLVAGLCDMHMLPEA 437
             +     + +    ++    V +K +  M+  E+       T N+L+  LC  + +  A
Sbjct: 484 RPDVVAYSSMIHGLCNAGSVEVGLKLFNEMLCQESDSQPDVVTYNILLRALCKQNSISHA 543

Query: 438 VKYAKGMAEKG 448
           +     M ++G
Sbjct: 544 IDLLNSMLDRG 554



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 96/366 (26%), Positives = 148/366 (40%), Gaps = 46/366 (12%)

Query: 117 FDAMWDAIKSMKKEN-VLSLATFASVFSSYVVADRVKDAITTFDVM-EQYGCKHDVFALN 174
           F  ++     MK+E  V     F  VF +Y  A   + AI  F  M +++ C+  V + N
Sbjct: 80  FGTLFQVFDRMKRERRVFIEKNFILVFRAYGKAHLPEKAIELFGRMVDEFQCRRTVRSFN 139

Query: 175 SLLSAICRDGKTIDAWQFLRV-VDGR--IKPDNDTYAILLEGWEKERDVANAKKTFGEMV 231
           S+L+ I ++G    A +F    V G+  I P+  ++ ++++   K   V  A + F EM 
Sbjct: 140 SVLNVIIQEGLFHRALEFYECGVGGKTNISPNVLSFNLVIKAMCKLGLVDRAIEVFREMA 199

Query: 232 IEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPG-MTFFKLAFEECLTG 290
           I+   +PD V  Y + +  L K  D I E V  L  M   GC P  +TF  L    C  G
Sbjct: 200 IQ-KCEPD-VFTYCTLMDGLCKE-DRIDEAVLLLDEMQIEGCFPSSVTFNVLINGLCKKG 256

Query: 291 QNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQT 350
             +R  + +    +   G  P+   YN +I+  C   +   A+ LLD MV +   P+  T
Sbjct: 257 DMVRVTKLVDNMFLK--GCVPNEVTYNTIINGLCLKGKLDKAVSLLDRMVASKCVPNDVT 314

Query: 351 YNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMI 410
           Y  L   LVK  +  +   L + +   E   +H N  A                      
Sbjct: 315 YGTLINGLVKQGRSVDGVHLLSSL---EERGHHANEYAY--------------------- 350

Query: 411 ENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEA 470
                      + L++GL       EA+   K M EKG Q      S L   L +  K  
Sbjct: 351 -----------STLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLD 399

Query: 471 VYEELL 476
             +E+L
Sbjct: 400 EAKEIL 405



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/226 (23%), Positives = 103/226 (45%), Gaps = 9/226 (3%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RV 195
            ++++ S     ++ ++A+  +  M + GC+ ++   ++L+  +CR+GK  +A + L  +
Sbjct: 349 AYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEM 408

Query: 196 VDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
           V+    P+  TY+ L++G+ K  +   A + + EM        + VP    Y + +   C
Sbjct: 409 VNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMA-----KNNCVPNEICYSVLIHGLC 463

Query: 256 -DG-IYETVNSLKRMMERGCNPGMTFFK-LAFEECLTGQNLRGAEFIWGAMVGRIGFRPD 312
            DG + E +     M+ RG  P +  +  +    C  G    G +     +      +PD
Sbjct: 464 EDGKLREAMMMWTHMLGRGLRPDVVAYSSMIHGLCNAGSVEVGLKLFNEMLCQESDSQPD 523

Query: 313 THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFL 358
              YN+++   C  N    A+ LL+ M+  G  PD+ T NI    L
Sbjct: 524 VVTYNILLRALCKQNSISHAIDLLNSMLDRGCNPDLITCNIFLNAL 569


>gi|449431996|ref|XP_004133786.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15010,
           mitochondrial-like [Cucumis sativus]
 gi|449477985|ref|XP_004155184.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15010,
           mitochondrial-like [Cucumis sativus]
          Length = 485

 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 100/410 (24%), Positives = 167/410 (40%), Gaps = 23/410 (5%)

Query: 54  VEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGK 113
           V + L+   I+VS E V  VL    +    A  FF W+  Q    HS   ++ ++ +LGK
Sbjct: 30  VRNKLEHCFIKVSGELVVAVLSRIRNDWEAAFTFFVWAGKQPGYAHSVREYHSMISILGK 89

Query: 114 NCLFDAMWDAIKSMK----KENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHD 169
              FD  W  I  M+      ++++  T   +   Y     V  AI TF   +++G    
Sbjct: 90  MRKFDTAWALIDEMRGGTPGSSLVTPQTLLIMIRRYCAVHDVAKAINTFYAHKRFGFNIG 149

Query: 170 VFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDN-DTYAILLEGWEKERDVANAKKTFG 228
           +    SLLSA+CR     DA ++L   +  + P N  ++ I+L GW     + + ++ + 
Sbjct: 150 LEEFQSLLSALCRYKNVKDA-EYLLFCNKDVFPFNTKSFNIILNGWCVIGSLRDTERVWK 208

Query: 229 EMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECL 288
           EM    G   D V +Y S  I+       +++ +   + M     +P    +        
Sbjct: 209 EMT-RRGISHDAV-SYAS-CISCYSKVRNLHKVLRLFEDMKRMKIDPDRKVYNAVIHSLA 265

Query: 289 TGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDI 348
            G+ L+ A  +   M  + G   +   YN +I   C +     A  + +E++  G  P I
Sbjct: 266 KGRCLKEAADLIKTMEEK-GIIANVVTYNSVIKPLCKARRFDEARAVFEELLQRGLCPTI 324

Query: 349 QTYNILFEFLVKGRKLWEASGLFNEMVKNEN-----VLNHENCRAAVRVYMDSDDPYVAI 403
           QTY+    FL    +++E       M  N       +L  + CR     +   D+     
Sbjct: 325 QTYHAFLRFLRTEEEIFELLKKMRTMGCNPTTDTYIMLIRKFCR-----WRQLDN---VS 376

Query: 404 KFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTP 453
           + W  M EN  S    +  +L+ GL     L +A KY   M EK +   P
Sbjct: 377 RIWHEMSENGISPDRSSYIVLIHGLFLNGKLEDAHKYYLEMKEKDLLPEP 426


>gi|296083846|emb|CBI24234.3| unnamed protein product [Vitis vinifera]
          Length = 589

 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 92/399 (23%), Positives = 168/399 (42%), Gaps = 41/399 (10%)

Query: 90  WSAYQ----LNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSS 144
           W  YQ       + + Y  N++++ L KN   +     +  M+++ V   + T+ ++ ++
Sbjct: 82  WEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINA 141

Query: 145 YVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPD 203
           Y     +++A    D M   G K  VF  N++++ +C+ GK + A   L  ++   + PD
Sbjct: 142 YCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPD 201

Query: 204 NDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVP--------------------- 242
             TY ILL    +  ++ +A++ F EM  + G  PD V                      
Sbjct: 202 TATYNILLVECCRNDNMMDAERIFDEMPSQ-GVVPDLVSFSALIGLLSKNGCLDQALKYF 260

Query: 243 --------AYDSYLITLLKG--C-DGIY-ETVNSLKRMMERGCNPGMTFFKLAFEECLTG 290
                   A D+ + T+L G  C +G+  E +     M+E+GC   +  +          
Sbjct: 261 RDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKE 320

Query: 291 QNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQT 350
           + L  A+ ++  M  R G  PD + +  +I+ Y        A+ L + M+     PD+ T
Sbjct: 321 KMLSEADELFTEMTER-GVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVT 379

Query: 351 YNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMI 410
           YN L +   KG ++ + + L+N+M+      NH +    +  Y +      A + W  M+
Sbjct: 380 YNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMV 439

Query: 411 ENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
           E        T N +V G C      +A ++   M  KGI
Sbjct: 440 EKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGI 478



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 75/316 (23%), Positives = 137/316 (43%), Gaps = 10/316 (3%)

Query: 118 DAMWDAIKSMKKENV-LSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSL 176
           D  W+  + + +  V +++ T   + ++     ++++  +    ME+ G   DV   N+L
Sbjct: 79  DLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTL 138

Query: 177 LSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVG 235
           ++A CR G   +A++ +  + G+ +KP   TY  ++ G  K      AK    EM +++G
Sbjct: 139 INAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEM-LKIG 197

Query: 236 WDPDNVPAYDSYLITLLKGC--DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNL 293
             PD      +Y I L++ C  D + +       M  +G  P +  F  A    L+    
Sbjct: 198 MSPDTA----TYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFS-ALIGLLSKNGC 252

Query: 294 RGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNI 353
                 +   +   G  PD  +Y ++I  +C +     A+K+ DEM+  G   D+ TYN 
Sbjct: 253 LDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNT 312

Query: 354 LFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENH 413
           +   L K + L EA  LF EM +     +       +  Y    +   A+  ++ MI+ +
Sbjct: 313 ILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRN 372

Query: 414 CSDLSETGNLLVAGLC 429
                 T N L+ G C
Sbjct: 373 LKPDVVTYNTLIDGFC 388



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 88/325 (27%), Positives = 144/325 (44%), Gaps = 27/325 (8%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRV 195
            F  +  +YV A ++++    F V++  G    + A NSLL  + + G    AW+ +  V
Sbjct: 29  VFDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEV 88

Query: 196 VDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
           V   ++ +  T  I++    K + + N K    +M  E G  PD V  Y++ +    +  
Sbjct: 89  VRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDME-EKGVFPD-VVTYNTLINAYCR-- 144

Query: 256 DGIYETVNSL-KRMMERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDT 313
            G+ E    L   M  +G  P + T+  +    C TG+ LR A+ +   M+ +IG  PDT
Sbjct: 145 QGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLR-AKGVLDEML-KIGMSPDT 202

Query: 314 HMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNE 373
             YN+++   C ++    A ++ DEM   G  PD+ +++ L   L K   L +A   F +
Sbjct: 203 ATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRD 262

Query: 374 MVKNEN---------VLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLL 424
           M KN           +L    CR  V           A+K    M+E  C     T N +
Sbjct: 263 M-KNAGLAPDNVIYTILIGGFCRNGVMSE--------ALKVRDEMLEQGCVLDVVTYNTI 313

Query: 425 VAGLCDMHMLPEAVKYAKGMAEKGI 449
           + GLC   ML EA +    M E+G+
Sbjct: 314 LNGLCKEKMLSEADELFTEMTERGV 338



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 73/317 (23%), Positives = 135/317 (42%), Gaps = 53/317 (16%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKK-----ENVLSLATFASVFSSYVVADRVKDAITT 157
           +++ ++ LL KN   D      + MK      +NV+    +  +   +     + +A+  
Sbjct: 239 SFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVI----YTILIGGFCRNGVMSEALKV 294

Query: 158 FDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEK 216
            D M + GC  DV   N++L+ +C++    +A + F  + +  + PD  T+  L+ G+ K
Sbjct: 295 RDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSK 354

Query: 217 ERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSL-KRMMERG--- 272
           + ++  A   F EM+I+    PD V  Y++ +    KG +   E VN L   M+ R    
Sbjct: 355 DGNMNKAVTLF-EMMIQRNLKPD-VVTYNTLIDGFCKGSE--MEKVNELWNDMISRRIYP 410

Query: 273 ------------CNPGMT--FFKL-------AFEE------------CLTGQNLRGAEFI 299
                       CN G     F+L        FE             C  G  ++  EF+
Sbjct: 411 NHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFL 470

Query: 300 WGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLV 359
              ++   G  PD   YN +I+ +        A  L+++M  +G  PD+ TYN++     
Sbjct: 471 SNMLLK--GIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFS 528

Query: 360 KGRKLWEASGLFNEMVK 376
           +  ++ EA  +  +M++
Sbjct: 529 RQGRMQEAELIMLKMIE 545



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 65/281 (23%), Positives = 119/281 (42%), Gaps = 16/281 (5%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVM 161
            +N +++ L K  +     +    M +  V     TF ++ + Y     +  A+T F++M
Sbjct: 309 TYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMM 368

Query: 162 EQYGCKHDVFALNSLLSAICRDG---KTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKER 218
            Q   K DV   N+L+   C+     K  + W    ++  RI P++ +Y IL+ G+    
Sbjct: 369 IQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWN--DMISRRIYPNHISYGILINGYCNMG 426

Query: 219 DVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNS---LKRMMERGCNP 275
            V+ A + + EMV E G++   +        T++KG       V +   L  M+ +G  P
Sbjct: 427 CVSEAFRLWDEMV-EKGFEATIITCN-----TIVKGYCRAGNAVKADEFLSNMLLKGIVP 480

Query: 276 GMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKL 335
               +       +  +N+  A  +   M    G  PD   YN++++ +        A  +
Sbjct: 481 DGITYNTLINGFIKEENMDRAFALVNKMENS-GLLPDVITYNVILNGFSRQGRMQEAELI 539

Query: 336 LDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK 376
           + +M+  G  PD  TY  L    V    L EA  + +EM++
Sbjct: 540 MLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQ 580


>gi|296086456|emb|CBI32045.3| unnamed protein product [Vitis vinifera]
          Length = 648

 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 89/390 (22%), Positives = 161/390 (41%), Gaps = 16/390 (4%)

Query: 98  KHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAIT 156
           K +PY +N V+ LL K          ++ M  E +      + ++   +     V  A  
Sbjct: 220 KPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKLGNVSSAYR 279

Query: 157 TFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWE 215
            FD M++     D     +++  +C+ G+ ++A + F  +V  R++PD  TY  L++G+ 
Sbjct: 280 LFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYC 339

Query: 216 KERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNP 275
           KE  +  A     +M +++G  P N+  Y +    L K   G  +T N L   M   C  
Sbjct: 340 KEGKMKEAFSLHNQM-LQMGLTP-NIVTYTALADGLCKC--GEVDTANELLHEM---CRK 392

Query: 276 GM-----TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETG 330
           G+     T+  L    C  G   +  + +    V   GF PD   Y  ++  YC S E  
Sbjct: 393 GLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVA--GFHPDAVTYTTLMDAYCKSREMV 450

Query: 331 AAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAV 390
            A +LL +M+     P + T+N+L         L +   L   M++   + N     + +
Sbjct: 451 RAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLI 510

Query: 391 RVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQ 450
           + Y   ++     + ++ M          T N+L+ G C    + EA    + M  KG  
Sbjct: 511 KQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEAWFLHRDMVGKGFN 570

Query: 451 VTPFALSKLKQILIKARKEAVYEELLKKCK 480
           +T  + + L +   K +K     EL ++ +
Sbjct: 571 LTVSSYNALIKGFYKRKKFLEARELFEQMR 600



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 60/254 (23%), Positives = 114/254 (44%), Gaps = 9/254 (3%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           ++ T+ ++         V  A      M + G + +++  NSL++ +C+ G    A + +
Sbjct: 362 NIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLM 421

Query: 194 RVVD-GRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
           + ++     PD  TY  L++ + K R++  A +   +M+     D +  P   ++ + + 
Sbjct: 422 KDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQML-----DRELQPTVVTFNVLMN 476

Query: 253 KGC-DGIYETVNSL-KRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFR 310
             C  G+ E    L K M+E+G  P  T +    ++     N+R    I+  M  + G  
Sbjct: 477 GFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQYCIRNNMRATTEIYRGMCAK-GVV 535

Query: 311 PDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGL 370
           PD + YN++I  +C +     A  L  +MV  G    + +YN L +   K +K  EA  L
Sbjct: 536 PDGNTYNILIKGHCKARNMKEAWFLHRDMVGKGFNLTVSSYNALIKGFYKRKKFLEAREL 595

Query: 371 FNEMVKNENVLNHE 384
           F +M +   V + E
Sbjct: 596 FEQMRREGLVADRE 609



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 79/318 (24%), Positives = 131/318 (41%), Gaps = 12/318 (3%)

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYAILLEGWEKERD 219
           M+  G K + +  N ++  +C+ GK  +A + LR ++   I PD   Y  L++G+ K  +
Sbjct: 214 MQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKLGN 273

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDG--IYETVNSLKRMMERGCNPG- 276
           V++A + F EM           P + +Y   +   C    + E       M+ +   P  
Sbjct: 274 VSSAYRLFDEM-----QKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDE 328

Query: 277 MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLL 336
           +T+  L    C  G+ ++ A  +   M+ ++G  P+   Y  +    C   E   A +LL
Sbjct: 329 VTYTALIDGYCKEGK-MKEAFSLHNQML-QMGLTPNIVTYTALADGLCKCGEVDTANELL 386

Query: 337 DEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDS 396
            EM   G   +I TYN L   L K   + +A  L  +M       +       +  Y  S
Sbjct: 387 HEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKS 446

Query: 397 DDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFAL 456
            +   A +  + M++        T N+L+ G C   ML +  K  K M EKGI       
Sbjct: 447 REMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTY 506

Query: 457 SKL-KQILIKARKEAVYE 473
           + L KQ  I+    A  E
Sbjct: 507 NSLIKQYCIRNNMRATTE 524



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/223 (23%), Positives = 98/223 (43%), Gaps = 5/223 (2%)

Query: 133 LSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQF 192
           L++ T+ S+ +    A  +  A+     ME  G   D     +L+ A C+  + + A + 
Sbjct: 396 LNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHEL 455

Query: 193 LR-VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITL 251
           LR ++D  ++P   T+ +L+ G+     + + +K    M +E G  P N   Y+S LI  
Sbjct: 456 LRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWM-LEKGIMP-NATTYNS-LIKQ 512

Query: 252 LKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRP 311
               + +  T    + M  +G  P    + +  +     +N++ A F+   MVG+ GF  
Sbjct: 513 YCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEAWFLHRDMVGK-GFNL 571

Query: 312 DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNIL 354
               YN +I  +    +   A +L ++M   G   D + YNI 
Sbjct: 572 TVSSYNALIKGFYKRKKFLEARELFEQMRREGLVADREIYNIF 614



 Score = 46.6 bits (109), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 65/169 (38%)

Query: 308 GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEA 367
           G +P+ + YN +I L C + +   A ++L EM+  G  PD   Y  L +   K   +  A
Sbjct: 218 GLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKLGNVSSA 277

Query: 368 SGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAG 427
             LF+EM K +   +     A +     +     A K +  M+         T   L+ G
Sbjct: 278 YRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDG 337

Query: 428 LCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELL 476
            C    + EA      M + G+       + L   L K  +     ELL
Sbjct: 338 YCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELL 386


>gi|413939122|gb|AFW73673.1| hypothetical protein ZEAMMB73_530264 [Zea mays]
          Length = 526

 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 94/378 (24%), Positives = 148/378 (39%), Gaps = 19/378 (5%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVME 162
           A++ VVD LG+   FDA W  +     +   S  TFA +   YV A   + AI  FD ME
Sbjct: 120 AYDAVVDALGRARQFDAAWRVVVDASADGAASPRTFAVLARRYVAAGMTRQAIRAFDDME 179

Query: 163 QYGCKH-DVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVA 221
            +  +  D     +LL  +C+      A +       +  P+   Y+IL+ GW K     
Sbjct: 180 AFVSREPDAAEFATLLDTLCKYKYPKVATEVFNKRKYKYGPNEKMYSILIYGWCKVNRSD 239

Query: 222 NAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD---------GIYETVNSLKRMMERG 272
            AKK   +M++  G +P N+  Y+  L  + +             ++   + LK M  RG
Sbjct: 240 MAKKFLKDMLVH-GIEP-NIVTYNILLNGICRHASLHPDYRFDRTVHAAEDLLKEMRGRG 297

Query: 273 CNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAA 332
             P +T + +                ++ +M  R G  P    Y  +I            
Sbjct: 298 IEPDVTSYSIILHVYSRAHKPELCLCMFRSMKER-GICPTVATYTSVIKCLSSCGRLEDG 356

Query: 333 MKLLDEMVYNGAFPDIQTYNILFEFLVKGRK-LWEASGLFNEMVKNENVLNHENCRA--- 388
             LLDEMV  G  P   TYN   +   +GRK +  A  L+N+M K    L   +      
Sbjct: 357 EILLDEMVAEGVCPSPATYNCFLK-EYRGRKDVTAALELYNKM-KAPGSLTAPDIHTYNI 414

Query: 389 AVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448
            + ++   +     +  W  M E+      ++  LL+   CD     EA ++   M EKG
Sbjct: 415 LLGMFSKLNRHGTVMDIWSDMCESTVGPDLDSYTLLIHCFCDSQKWREACQFFMEMIEKG 474

Query: 449 IQVTPFALSKLKQILIKA 466
                     L + LI+A
Sbjct: 475 FLPQKITFETLYRGLIQA 492


>gi|359473390|ref|XP_002268680.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Vitis vinifera]
          Length = 748

 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 89/390 (22%), Positives = 161/390 (41%), Gaps = 16/390 (4%)

Query: 98  KHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAIT 156
           K +PY +N V+ LL K          ++ M  E +      + ++   +     V  A  
Sbjct: 320 KPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKLGNVSSAYR 379

Query: 157 TFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWE 215
            FD M++     D     +++  +C+ G+ ++A + F  +V  R++PD  TY  L++G+ 
Sbjct: 380 LFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYC 439

Query: 216 KERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNP 275
           KE  +  A     +M +++G  P N+  Y +    L K   G  +T N L   M   C  
Sbjct: 440 KEGKMKEAFSLHNQM-LQMGLTP-NIVTYTALADGLCKC--GEVDTANELLHEM---CRK 492

Query: 276 GM-----TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETG 330
           G+     T+  L    C  G   +  + +    V   GF PD   Y  ++  YC S E  
Sbjct: 493 GLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVA--GFHPDAVTYTTLMDAYCKSREMV 550

Query: 331 AAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAV 390
            A +LL +M+     P + T+N+L         L +   L   M++   + N     + +
Sbjct: 551 RAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLI 610

Query: 391 RVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQ 450
           + Y   ++     + ++ M          T N+L+ G C    + EA    + M  KG  
Sbjct: 611 KQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEAWFLHRDMVGKGFN 670

Query: 451 VTPFALSKLKQILIKARKEAVYEELLKKCK 480
           +T  + + L +   K +K     EL ++ +
Sbjct: 671 LTVSSYNALIKGFYKRKKFLEARELFEQMR 700



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 81/342 (23%), Positives = 142/342 (41%), Gaps = 12/342 (3%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-V 195
           ++++V + Y     ++  +   + M+  G K + +  N ++  +C+ GK  +A + LR +
Sbjct: 290 SYSTVINGYCQVGELQRVLKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREM 349

Query: 196 VDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
           +   I PD   Y  L++G+ K  +V++A + F EM           P + +Y   +   C
Sbjct: 350 ISEGIAPDGVIYTTLIDGFCKLGNVSSAYRLFDEM-----QKRKISPDFITYTAVICGLC 404

Query: 256 DG--IYETVNSLKRMMERGCNPG-MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD 312
               + E       M+ +   P  +T+  L    C  G+ ++ A  +   M+ ++G  P+
Sbjct: 405 QTGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCKEGK-MKEAFSLHNQML-QMGLTPN 462

Query: 313 THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFN 372
              Y  +    C   E   A +LL EM   G   +I TYN L   L K   + +A  L  
Sbjct: 463 IVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMK 522

Query: 373 EMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMH 432
           +M       +       +  Y  S +   A +  + M++        T N+L+ G C   
Sbjct: 523 DMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSG 582

Query: 433 MLPEAVKYAKGMAEKGIQVTPFALSKL-KQILIKARKEAVYE 473
           ML +  K  K M EKGI       + L KQ  I+    A  E
Sbjct: 583 MLEDGEKLLKWMLEKGIMPNATTYNSLIKQYCIRNNMRATTE 624



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 60/254 (23%), Positives = 114/254 (44%), Gaps = 9/254 (3%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           ++ T+ ++         V  A      M + G + +++  NSL++ +C+ G    A + +
Sbjct: 462 NIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLM 521

Query: 194 RVVD-GRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
           + ++     PD  TY  L++ + K R++  A +   +M+     D +  P   ++ + + 
Sbjct: 522 KDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQML-----DRELQPTVVTFNVLMN 576

Query: 253 KGC-DGIYETVNSL-KRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFR 310
             C  G+ E    L K M+E+G  P  T +    ++     N+R    I+  M  + G  
Sbjct: 577 GFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQYCIRNNMRATTEIYRGMCAK-GVV 635

Query: 311 PDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGL 370
           PD + YN++I  +C +     A  L  +MV  G    + +YN L +   K +K  EA  L
Sbjct: 636 PDGNTYNILIKGHCKARNMKEAWFLHRDMVGKGFNLTVSSYNALIKGFYKRKKFLEAREL 695

Query: 371 FNEMVKNENVLNHE 384
           F +M +   V + E
Sbjct: 696 FEQMRREGLVADRE 709



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 92/380 (24%), Positives = 140/380 (36%), Gaps = 43/380 (11%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLS------------------ 178
            F   F   V A  + +A   FD M  YG    V + N  +S                  
Sbjct: 184 VFDIFFQVLVEAGMLDEARKLFDKMLNYGLLISVDSCNLFISHLSEDLDGIKIALKVFVE 243

Query: 179 ------------------AICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERD 219
                             ++C+ G+ ++A Q L  ++ R   PD  +Y+ ++ G+ +  +
Sbjct: 244 FPEVGVCWNTASYNIITHSLCQLGRVVEAHQLLLQMELRGCIPDVISYSTVINGYCQVGE 303

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNP-GMT 278
           +    K   EM I+ G  P+  P   + +I LL     + E    L+ M+  G  P G+ 
Sbjct: 304 LQRVLKLIEEMQIK-GLKPN--PYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVI 360

Query: 279 FFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDE 338
           +  L    C  G N+  A  ++  M  R    PD   Y  +I   C +     A KL  E
Sbjct: 361 YTTLIDGFCKLG-NVSSAYRLFDEMQKR-KISPDFITYTAVICGLCQTGRVMEADKLFHE 418

Query: 339 MVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDD 398
           MV     PD  TY  L +   K  K+ EA  L N+M++     N     A         +
Sbjct: 419 MVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGE 478

Query: 399 PYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSK 458
              A +    M          T N LV GLC    + +AVK  K M   G        + 
Sbjct: 479 VDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTT 538

Query: 459 LKQILIKARKEAVYEELLKK 478
           L     K+R+     ELL++
Sbjct: 539 LMDAYCKSREMVRAHELLRQ 558



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/223 (23%), Positives = 98/223 (43%), Gaps = 5/223 (2%)

Query: 133 LSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQF 192
           L++ T+ S+ +    A  +  A+     ME  G   D     +L+ A C+  + + A + 
Sbjct: 496 LNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHEL 555

Query: 193 LR-VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITL 251
           LR ++D  ++P   T+ +L+ G+     + + +K    M +E G  P N   Y+S LI  
Sbjct: 556 LRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWM-LEKGIMP-NATTYNS-LIKQ 612

Query: 252 LKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRP 311
               + +  T    + M  +G  P    + +  +     +N++ A F+   MVG+ GF  
Sbjct: 613 YCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEAWFLHRDMVGK-GFNL 671

Query: 312 DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNIL 354
               YN +I  +    +   A +L ++M   G   D + YNI 
Sbjct: 672 TVSSYNALIKGFYKRKKFLEARELFEQMRREGLVADREIYNIF 714


>gi|302143887|emb|CBI22748.3| unnamed protein product [Vitis vinifera]
          Length = 518

 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 89/379 (23%), Positives = 162/379 (42%), Gaps = 20/379 (5%)

Query: 12  DPSPDPHNKRKRSTFASHLD----VPNLPPTIKTLCEIIA-NTPSPTVEDVLDKTLIRVS 66
           D +PD  N    S+ A  L       N+      + +I+  + P  + +  LD+  IRVS
Sbjct: 90  DENPDSDNGIGSSSPAEFLAGKGYFDNMRLDASRVLQILQQDCPGFSTKAALDELQIRVS 149

Query: 67  QETVEQVL-----KFSYSHPGPAVK----FFRWSAYQLNDKHSPYAWNLVVDLLGKNCLF 117
              V +VL       +Y++     K    FF WS  Q N +H+  A++L++ +  ++  F
Sbjct: 150 GGLVREVLLEILKTVNYTNKERCAKLGYKFFMWSGQQENYRHTVNAYHLIMKIFAESDEF 209

Query: 118 DAMWDAIKSMKKENV-LSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSL 176
            AMW  +  M ++   ++  TF  +  +   A   + A+  F   + +  +    + N++
Sbjct: 210 KAMWRLVDEMIEQGFPVTARTFQILICTCGEAGLARRAVERFVKSKNFNYRPFKHSYNAI 269

Query: 177 LSAI-CRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVG 235
           L  + C     +  W + +++     PD  TY I++    +   +    +   E+    G
Sbjct: 270 LHCLLCLKQYKLVEWVYQQMLLEDYSPDILTYNIVMCTKYRLGKLDQFHRLLEELGTN-G 328

Query: 236 WDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRG 295
           + PD    ++  L  L KG   +   ++ L  M E G +P +  F    +      NL  
Sbjct: 329 FSPD-FHTFNILLHLLGKGNKPL-AALDLLNHMKEVGFDPSVLHFTTLIDGLSRAGNLDA 386

Query: 296 AEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILF 355
            ++ +  M+ ++G  PD   Y +MI+ Y  + E   A  L +EM   G  P++ TYN + 
Sbjct: 387 CKYFFDEMI-KLGCMPDVVCYTVMITGYIVAGELEMAQGLFEEMTVKGQLPNVFTYNSMI 445

Query: 356 EFLVKGRKLWEASGLFNEM 374
             L    K  EA  +  EM
Sbjct: 446 RGLCMAEKFEEARSMLKEM 464



 Score = 45.1 bits (105), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 71/192 (36%), Gaps = 37/192 (19%)

Query: 304 VGRIGFRPDTHMYNMMISLYCYSNETGAAMKLL--------------------------- 336
           +G  GF PD H +N+++ L    N+  AA+ LL                           
Sbjct: 324 LGTNGFSPDFHTFNILLHLLGKGNKPLAALDLLNHMKEVGFDPSVLHFTTLIDGLSRAGN 383

Query: 337 --------DEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRA 388
                   DEM+  G  PD+  Y ++    +   +L  A GLF EM     + N     +
Sbjct: 384 LDACKYFFDEMIKLGCMPDVVCYTVMITGYIVAGELEMAQGLFEEMTVKGQLPNVFTYNS 443

Query: 389 AVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448
            +R    ++    A    K M    C+      N LV  L +   L EA +  + M +KG
Sbjct: 444 MIRGLCMAEKFEEARSMLKEMESRGCNPNFLVYNTLVGNLRNAGKLKEAHEVIRHMVDKG 503

Query: 449 IQVTPFALSKLK 460
             V    LSK K
Sbjct: 504 QYVH--LLSKFK 513



 Score = 40.8 bits (94), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 60/126 (47%), Gaps = 10/126 (7%)

Query: 154 AITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIK----PDNDTYAI 209
           A+   + M++ G    V    +L+  + R G  +DA ++    D  IK    PD   Y +
Sbjct: 352 ALDLLNHMKEVGFDPSVLHFTTLIDGLSRAG-NLDACKYF--FDEMIKLGCMPDVVCYTV 408

Query: 210 LLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMM 269
           ++ G+    ++  A+  F EM ++ G  P NV  Y+S +I  L   +   E  + LK M 
Sbjct: 409 MITGYIVAGELEMAQGLFEEMTVK-GQLP-NVFTYNS-MIRGLCMAEKFEEARSMLKEME 465

Query: 270 ERGCNP 275
            RGCNP
Sbjct: 466 SRGCNP 471


>gi|225470179|ref|XP_002268211.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g55630-like [Vitis vinifera]
          Length = 514

 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 89/379 (23%), Positives = 162/379 (42%), Gaps = 20/379 (5%)

Query: 12  DPSPDPHNKRKRSTFASHLD----VPNLPPTIKTLCEIIA-NTPSPTVEDVLDKTLIRVS 66
           D +PD  N    S+ A  L       N+      + +I+  + P  + +  LD+  IRVS
Sbjct: 86  DENPDSDNGIGSSSPAEFLAGKGYFDNMRLDASRVLQILQQDCPGFSTKAALDELQIRVS 145

Query: 67  QETVEQVL-----KFSYSHPGPAVK----FFRWSAYQLNDKHSPYAWNLVVDLLGKNCLF 117
              V +VL       +Y++     K    FF WS  Q N +H+  A++L++ +  ++  F
Sbjct: 146 GGLVREVLLEILKTVNYTNKERCAKLGYKFFMWSGQQENYRHTVNAYHLIMKIFAESDEF 205

Query: 118 DAMWDAIKSMKKENV-LSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSL 176
            AMW  +  M ++   ++  TF  +  +   A   + A+  F   + +  +    + N++
Sbjct: 206 KAMWRLVDEMIEQGFPVTARTFQILICTCGEAGLARRAVERFVKSKNFNYRPFKHSYNAI 265

Query: 177 LSAI-CRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVG 235
           L  + C     +  W + +++     PD  TY I++    +   +    +   E+    G
Sbjct: 266 LHCLLCLKQYKLVEWVYQQMLLEDYSPDILTYNIVMCTKYRLGKLDQFHRLLEELGTN-G 324

Query: 236 WDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRG 295
           + PD    ++  L  L KG   +   ++ L  M E G +P +  F    +      NL  
Sbjct: 325 FSPD-FHTFNILLHLLGKGNKPL-AALDLLNHMKEVGFDPSVLHFTTLIDGLSRAGNLDA 382

Query: 296 AEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILF 355
            ++ +  M+ ++G  PD   Y +MI+ Y  + E   A  L +EM   G  P++ TYN + 
Sbjct: 383 CKYFFDEMI-KLGCMPDVVCYTVMITGYIVAGELEMAQGLFEEMTVKGQLPNVFTYNSMI 441

Query: 356 EFLVKGRKLWEASGLFNEM 374
             L    K  EA  +  EM
Sbjct: 442 RGLCMAEKFEEARSMLKEM 460



 Score = 45.1 bits (105), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 71/192 (36%), Gaps = 37/192 (19%)

Query: 304 VGRIGFRPDTHMYNMMISLYCYSNETGAAMKLL--------------------------- 336
           +G  GF PD H +N+++ L    N+  AA+ LL                           
Sbjct: 320 LGTNGFSPDFHTFNILLHLLGKGNKPLAALDLLNHMKEVGFDPSVLHFTTLIDGLSRAGN 379

Query: 337 --------DEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRA 388
                   DEM+  G  PD+  Y ++    +   +L  A GLF EM     + N     +
Sbjct: 380 LDACKYFFDEMIKLGCMPDVVCYTVMITGYIVAGELEMAQGLFEEMTVKGQLPNVFTYNS 439

Query: 389 AVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448
            +R    ++    A    K M    C+      N LV  L +   L EA +  + M +KG
Sbjct: 440 MIRGLCMAEKFEEARSMLKEMESRGCNPNFLVYNTLVGNLRNAGKLKEAHEVIRHMVDKG 499

Query: 449 IQVTPFALSKLK 460
             V    LSK K
Sbjct: 500 QYVH--LLSKFK 509



 Score = 40.8 bits (94), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 60/126 (47%), Gaps = 10/126 (7%)

Query: 154 AITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIK----PDNDTYAI 209
           A+   + M++ G    V    +L+  + R G  +DA ++    D  IK    PD   Y +
Sbjct: 348 ALDLLNHMKEVGFDPSVLHFTTLIDGLSRAG-NLDACKYF--FDEMIKLGCMPDVVCYTV 404

Query: 210 LLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMM 269
           ++ G+    ++  A+  F EM ++ G  P NV  Y+S +I  L   +   E  + LK M 
Sbjct: 405 MITGYIVAGELEMAQGLFEEMTVK-GQLP-NVFTYNS-MIRGLCMAEKFEEARSMLKEME 461

Query: 270 ERGCNP 275
            RGCNP
Sbjct: 462 SRGCNP 467


>gi|297836911|ref|XP_002886337.1| F1N19.15 [Arabidopsis lyrata subsp. lyrata]
 gi|297332178|gb|EFH62596.1| F1N19.15 [Arabidopsis lyrata subsp. lyrata]
          Length = 1059

 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 86/356 (24%), Positives = 152/356 (42%), Gaps = 20/356 (5%)

Query: 23  RSTFASHLDVPNLPPTIKTLCEIIANTPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPG 82
           R    S L            CE++ + P P++ D       RV    + ++ KF      
Sbjct: 584 RERLRSELHCIKFDDAFGLFCEMLQSRPIPSIVD-----FTRV-LTAIAKMNKFD----- 632

Query: 83  PAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASV 141
             V +       L   H  Y++ +++    +   F      +  M K     S+ T  S+
Sbjct: 633 -IVIYLFHKMENLGISHDLYSFTILIHCFCRCSRFSLALALLGKMMKLGFQPSIVTLGSL 691

Query: 142 FSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-I 200
            + +   +R ++A++  D M + G + +V   N++++ +C++    +A +    ++ + I
Sbjct: 692 LNGFCQGNRFQEAVSLVDSMAELGLEPNVVIYNTVINGLCKNRDLNNALEIFYGMEKKGI 751

Query: 201 KPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYE 260
             D  TY  L+ G        +A +   +MV +   DP NV  + + + T +K    + E
Sbjct: 752 VADAVTYNTLISGLCNSGRWTDAARLLRDMV-KRKIDP-NVIFFTALIDTFVKE-GNLLE 808

Query: 261 TVNSLKRMMERGCNPG-MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMM 319
             N  K M+ R  +P  +T+  L    C+ G+ L  A+ ++  MV + G  PD   YN +
Sbjct: 809 AKNLYKEMIRRSVHPNILTYNSLINGFCIQGR-LGDAKHMFDLMVSK-GCFPDVVTYNTL 866

Query: 320 ISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
           I+ +C S      MKL  EM + G   D  TYN L     +  KL  A  +FN MV
Sbjct: 867 ITGFCKSKRVEDGMKLFCEMTHQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMV 922



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 76/318 (23%), Positives = 139/318 (43%), Gaps = 5/318 (1%)

Query: 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL- 193
           L +F  +   +    R   A+     M + G +  +  L SLL+  C+  +  +A   + 
Sbjct: 650 LYSFTILIHCFCRCSRFSLALALLGKMMKLGFQPSIVTLGSLLNGFCQGNRFQEAVSLVD 709

Query: 194 RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLK 253
            + +  ++P+   Y  ++ G  K RD+ NA + F  M  + G   D V  Y++ LI+ L 
Sbjct: 710 SMAELGLEPNVVIYNTVINGLCKNRDLNNALEIFYGME-KKGIVADAV-TYNT-LISGLC 766

Query: 254 GCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDT 313
                 +    L+ M++R  +P + FF    +  +   NL  A+ ++  M+ R    P+ 
Sbjct: 767 NSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEAKNLYKEMIRR-SVHPNI 825

Query: 314 HMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNE 373
             YN +I+ +C     G A  + D MV  G FPD+ TYN L     K +++ +   LF E
Sbjct: 826 LTYNSLINGFCIQGRLGDAKHMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCE 885

Query: 374 MVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHM 433
           M     V +       +  Y  +    VA K +  M++        T N+L+  LC+   
Sbjct: 886 MTHQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVPPDIVTYNILLDCLCNNGK 945

Query: 434 LPEAVKYAKGMAEKGIQV 451
           + +A+   + + +  + V
Sbjct: 946 IEKALVMVEDLQKNQMDV 963



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 101/452 (22%), Positives = 173/452 (38%), Gaps = 65/452 (14%)

Query: 51  SPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPA-------VKFFRWSAYQLNDKHSPYA 103
           S   ED LD  L  V  + +  V+ F+      A       V +F          H  Y+
Sbjct: 43  SIRFEDALDLFLEMVQSQPLPSVVDFTRLLTAIANLRRYETVIYFSQQMELFGISHDLYS 102

Query: 104 WNLVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASVFSSYVVADRVKDAITTFDVME 162
           + +++    +          +  M K     S+ TF S+   + + +R+ DA +    M 
Sbjct: 103 FTILIHCFCRCSRLSLALSILGKMMKLGYDPSIVTFGSLLHGFCLRNRIHDAFSLVASMV 162

Query: 163 QYG---------------CKH---------------------DVFALNSLLSAICRDGKT 186
           + G               CK+                     D+   N+LL+ +C  G+ 
Sbjct: 163 KSGYEPNVVVYNTLIDCLCKNGDVNIALELLNEMEKKGRLAADLVTYNTLLTGLCYSGEW 222

Query: 187 IDAWQFLR-VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYD 245
             A + LR +   RI PD  T+  L++ + K+ ++  A++ + +M ++    P+ V  Y+
Sbjct: 223 RQAARILRDMTKRRINPDVFTFTALIDAFVKQGNLDEAQELYKQM-LQSSIGPNTV-TYN 280

Query: 246 SYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVG 305
           S LI  L     +Y    +   M  +GC P +  +          + +     ++  M  
Sbjct: 281 S-LINGLCMHGRLYHAKKTFDLMASKGCFPNVVTYNTLINGFCKSRRVEDGMKLFQRMY- 338

Query: 306 RIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLW 365
           R G   DT  YN +I  YC   +   A  +   MV  G  PDI T+ IL   L    ++ 
Sbjct: 339 REGLVGDTFTYNTLIHGYCQVGKLRVAKDIFSWMVSCGVTPDIITHCILLHGLCVNGEIG 398

Query: 366 EASGLFNEMVKNE--------NVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDL 417
            A   FN+M   E        N++ H  C+A      D  +    + F +  +E    D 
Sbjct: 399 SAMVKFNDMRSGEKYLGIVAYNIMIHGLCKA------DKVEEAWEL-FCRLPVEGVKPD- 450

Query: 418 SETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
           + T  +++ GLC      EA +  + M E GI
Sbjct: 451 ARTYTIMILGLCKNGPRREADELFRRMKEDGI 482



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 52/222 (23%), Positives = 99/222 (44%), Gaps = 9/222 (4%)

Query: 134  SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-F 192
            ++ T+ S+ + + +  R+ DA   FD+M   GC  DV   N+L++  C+  +  D  + F
Sbjct: 824  NILTYNSLINGFCIQGRLGDAKHMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLF 883

Query: 193  LRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
              +    +  D  TY  L+ G+ +   +  A+K F  MV + G  PD V    +Y I L 
Sbjct: 884  CEMTHQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMV-DCGVPPDIV----TYNILLD 938

Query: 253  KGCDG--IYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFR 310
              C+   I + +  ++ + +   +  +  + +  +       ++ A  ++ ++  R G +
Sbjct: 939  CLCNNGKIEKALVMVEDLQKNQMDVDIITYNIIIQGMCRNDKVKEAWCLFRSLT-RKGVK 997

Query: 311  PDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYN 352
             D   Y  MIS  C +     A KL   M  +G  P  + Y+
Sbjct: 998  LDAIAYITMISGLCRNGLRREADKLCTRMKEDGFMPSERIYD 1039



 Score = 41.2 bits (95), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 36/179 (20%), Positives = 76/179 (42%), Gaps = 10/179 (5%)

Query: 307 IGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWE 366
           +G   D + + ++I  +C  +    A+ LL +M+  G  P I T   L     +G +  E
Sbjct: 644 LGISHDLYSFTILIHCFCRCSRFSLALALLGKMMKLGFQPSIVTLGSLLNGFCQGNRFQE 703

Query: 367 ASGLFNEMVK---NENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNL 423
           A  L + M +     NV+ +      +     + D   A++ +  M +      + T N 
Sbjct: 704 AVSLVDSMAELGLEPNVVIYN---TVINGLCKNRDLNNALEIFYGMEKKGIVADAVTYNT 760

Query: 424 LVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKA----RKEAVYEELLKK 478
           L++GLC+     +A +  + M ++ I       + L    +K       + +Y+E++++
Sbjct: 761 LISGLCNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEAKNLYKEMIRR 819


>gi|302799689|ref|XP_002981603.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
 gi|300150769|gb|EFJ17418.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
          Length = 609

 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 83/346 (23%), Positives = 150/346 (43%), Gaps = 12/346 (3%)

Query: 104 WNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVME 162
           +  VVD L ++   D   + ++ MK + V     TF+++ + +  A +V +A+  +  + 
Sbjct: 84  YTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWCNARKVDEALKLYKEIL 143

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV----DGRIKPDNDTYAILLEGWEKER 218
              C+ D  + ++L++ +CR+ +  +A++  + +    DG  KPD  TY  L++G+ K  
Sbjct: 144 TSSCRLDAVSSSALITGLCRERRIGEAYELFQEMEMREDGAWKPDVVTYTALIDGFCKSG 203

Query: 219 DVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMT 278
           ++  A K  G  V+E      NV  Y S L  L K  D + + ++  +RM  +GC P + 
Sbjct: 204 NLEKAMKMLG--VMEGRKCVPNVVTYSSLLHGLCKAGD-LDQALDLFRRMTSKGCVPNVV 260

Query: 279 FFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDE 338
            +            +  A  +   M        DT  YN ++  YC       A +L  E
Sbjct: 261 TYTTLIHGLCAAHKVDAARLLMDEMTATC-CPADTVSYNALLDGYCRLGRIEEAKQLFKE 319

Query: 339 MVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRV--YMDS 396
           M      PD  TY  L        +L EA  L   M K    ++ +    ++ V  Y  +
Sbjct: 320 MAAKSCLPDRITYTCLVRGFCNASRLEEARFLLENM-KTAAGIDPDVVTYSIVVAGYSRA 378

Query: 397 DDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAK 442
                A +F + MI  + +  + T + L+ GLC    +  A++  K
Sbjct: 379 KRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVNHAMEVLK 424



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 83/341 (24%), Positives = 141/341 (41%), Gaps = 11/341 (3%)

Query: 104 WNLVVDLLGKNCLFDAMWDAIKSMK--KENVLSLATFASVFSSYVVADRVKDAITTF-DV 160
           +N+VV+ L K  L    ++ +K M+  K     L T+++V + +     +  A     ++
Sbjct: 12  YNVVVNGLCKARLTSKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACEILREM 71

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERD 219
           + + G   DV    S++  +CRDGK   A + +R +  + ++PD  T++ L+ GW   R 
Sbjct: 72  VTRDGMAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWCNARK 131

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL---KGCDGIYETVNSLKRMMERGCNPG 276
           V  A K + E ++      D V +  S LIT L   +     YE    ++   +    P 
Sbjct: 132 VDEALKLYKE-ILTSSCRLDAVSS--SALITGLCRERRIGEAYELFQEMEMREDGAWKPD 188

Query: 277 MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLL 336
           +  +    +      NL  A  + G M GR    P+   Y+ ++   C + +   A+ L 
Sbjct: 189 VVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCV-PNVVTYSSLLHGLCKAGDLDQALDLF 247

Query: 337 DEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDS 396
             M   G  P++ TY  L   L    K+  A  L +EM       +  +  A +  Y   
Sbjct: 248 RRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPADTVSYNALLDGYCRL 307

Query: 397 DDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEA 437
                A + +K M    C     T   LV G C+   L EA
Sbjct: 308 GRIEEAKQLFKEMAAKSCLPDRITYTCLVRGFCNASRLEEA 348



 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 70/323 (21%), Positives = 123/323 (38%), Gaps = 20/323 (6%)

Query: 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FL 193
           + T+ ++   +  +  ++ A+    VME   C  +V   +SLL  +C+ G    A   F 
Sbjct: 189 VVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFR 248

Query: 194 RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLK 253
           R+      P+  TY  L+ G      V  A+    EM       P +  +Y++ L     
Sbjct: 249 RMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCC--PADTVSYNALL----- 301

Query: 254 GCDG------IYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRI 307
             DG      I E     K M  + C P    +            L  A F+   M    
Sbjct: 302 --DGYCRLGRIEEAKQLFKEMAAKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAA 359

Query: 308 GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEA 367
           G  PD   Y+++++ Y  +     A + + EM+     P+  TY+ L + L K  ++  A
Sbjct: 360 GIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVNHA 419

Query: 368 SGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAG 427
                E++KN +  +       +     +D    A+   + M+         T N ++  
Sbjct: 420 M----EVLKNVDKPDVVTYTIVIEGLCGTDRTEEALTLLEEMVNKRVEPSVGTFNSVIGA 475

Query: 428 LCDMHMLPEAVKYAKGMAEKGIQ 450
           LC +  + EA K    MA  G++
Sbjct: 476 LCRLGDMDEAWKLLVAMAAHGLE 498



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 79/378 (20%), Positives = 133/378 (35%), Gaps = 53/378 (14%)

Query: 117 FDAMWDAIKSM-KKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNS 175
            D   D  + M  K  V ++ T+ ++      A +V  A    D M    C  D  + N+
Sbjct: 240 LDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPADTVSYNA 299

Query: 176 LLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEV 234
           LL   CR G+  +A Q  + +  +   PD  TY  L+ G+     +  A+     M    
Sbjct: 300 LLDGYCRLGRIEEAKQLFKEMAAKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAA 359

Query: 235 GWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNP-GMTFFKLAFEECLTGQNL 293
           G DPD V    S ++          E    ++ M+ R   P  +T+  L    C  G+  
Sbjct: 360 GIDPDVVTY--SIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVN 417

Query: 294 RGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMV------------- 340
              E +          +PD   Y ++I   C ++ T  A+ LL+EMV             
Sbjct: 418 HAMEVLKNV------DKPDVVTYTIVIEGLCGTDRTEEALTLLEEMVNKRVEPSVGTFNS 471

Query: 341 ----------------------YNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKN- 377
                                  +G  P + TY  L E   +  ++  A  LF  M +  
Sbjct: 472 VIGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGFSRTGRMEIAYELFEVMRRKA 531

Query: 378 ------ENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDM 431
                  N++  +   A +R    + +   A+   + +    C    E    +V GL   
Sbjct: 532 KKSSSAANLVPEQAFSALIRGLCKAREIDKAMAVVEELRSRECEPAEEDCLAIVDGLLRA 591

Query: 432 HMLPEAVKYAKGMAEKGI 449
               EA K    +++ G+
Sbjct: 592 GRTEEAGKLINSISKVGL 609



 Score = 46.6 bits (109), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 57/114 (50%), Gaps = 4/114 (3%)

Query: 104 WNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQ 163
           ++ ++D L K    +   + +K++ K +V+   T+  V       DR ++A+T  + M  
Sbjct: 403 YSSLIDGLCKAGRVNHAMEVLKNVDKPDVV---TYTIVIEGLCGTDRTEEALTLLEEMVN 459

Query: 164 YGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEK 216
              +  V   NS++ A+CR G   +AW+ L  +    ++P   TY  LLEG+ +
Sbjct: 460 KRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGFSR 513


>gi|356532716|ref|XP_003534917.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 527

 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 83/347 (23%), Positives = 154/347 (44%), Gaps = 41/347 (11%)

Query: 104 WNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVME 162
           +N ++D L K+ L +  +D    M    +  ++ T++++   + +A ++ +A    + M 
Sbjct: 153 YNTIIDGLCKDKLVNEAYDLYSEMDARGIFPNVITYSTLIYGFCLAGQLMEAFGLLNEMI 212

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVA 221
                 +V+    L+ A+C++GK  +A   L V+    +KP+  +Y  L++G+    +V 
Sbjct: 213 LKNINPNVYTYTILMDALCKEGKVKEAKNLLAVMTKEGVKPNVVSYNTLMDGYCLIGEVQ 272

Query: 222 NAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFK 281
           NAK+ F  MV + G +P NV +Y+  +  L K    + E +N L+ ++ +          
Sbjct: 273 NAKQMFHTMV-QKGVNP-NVYSYNIMIDRLCKS-KRVDEAMNLLREVLHKN--------- 320

Query: 282 LAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVY 341
                                MV      P+T  Y+ +I  +C      +A+ LL EM +
Sbjct: 321 ---------------------MV------PNTVTYSSLIDGFCKLGRITSALDLLKEMYH 353

Query: 342 NGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYV 401
            G   D+ TY  L + L K + L +A+ LF +M +     N     A +           
Sbjct: 354 RGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPNKYTYTALIDGLCKGGRHKN 413

Query: 402 AIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448
           A K +++++   C     T N++++GLC   ML EA+     M E G
Sbjct: 414 AQKLFQHLLVKGCRINVWTYNVMISGLCKEGMLDEALAMKSKMEENG 460



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 82/350 (23%), Positives = 150/350 (42%), Gaps = 10/350 (2%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           T  ++     +   VK ++   D +   G + D  +  +LL+ +C+ G+T  A + LR++
Sbjct: 82  TLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYATLLNGLCKIGETRSALKLLRMI 141

Query: 197 DGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
           + R  +P+   Y  +++G  K++ V  A   + EM    G  P NV  Y S LI      
Sbjct: 142 EDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDAR-GIFP-NVITY-STLIYGFCLA 198

Query: 256 DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHM 315
             + E    L  M+ +  NP +  + +  +       ++ A+ +   M  + G +P+   
Sbjct: 199 GQLMEAFGLLNEMILKNINPNVYTYTILMDALCKEGKVKEAKNLLAVMT-KEGVKPNVVS 257

Query: 316 YNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
           YN ++  YC   E   A ++   MV  G  P++ +YNI+ + L K +++ EA  L  E++
Sbjct: 258 YNTLMDGYCLIGEVQNAKQMFHTMVQKGVNPNVYSYNIMIDRLCKSKRVDEAMNLLREVL 317

Query: 376 KNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLP 435
               V N     + +  +        A+   K M          T   L+  LC    L 
Sbjct: 318 HKNMVPNTVTYSSLIDGFCKLGRITSALDLLKEMYHRGQPADVVTYTSLLDALCKNQNLD 377

Query: 436 EAVKYAKGMAEKGIQVTPFALSKLKQILIKARK----EAVYEELL-KKCK 480
           +A      M E+GIQ   +  + L   L K  +    + +++ LL K C+
Sbjct: 378 KATALFMKMKERGIQPNKYTYTALIDGLCKGGRHKNAQKLFQHLLVKGCR 427



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 66/276 (23%), Positives = 124/276 (44%), Gaps = 6/276 (2%)

Query: 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDV 160
           Y + +++D L K        + +  M KE V  ++ ++ ++   Y +   V++A   F  
Sbjct: 221 YTYTILMDALCKEGKVKEAKNLLAVMTKEGVKPNVVSYNTLMDGYCLIGEVQNAKQMFHT 280

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYAILLEGWEKERD 219
           M Q G   +V++ N ++  +C+  +  +A   LR V+   + P+  TY+ L++G+ K   
Sbjct: 281 MVQKGVNPNVYSYNIMIDRLCKSKRVDEAMNLLREVLHKNMVPNTVTYSSLIDGFCKLGR 340

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTF 279
           + +A     EM       P +V  Y S L  L K    + +      +M ERG  P    
Sbjct: 341 ITSALDLLKEMYHR--GQPADVVTYTSLLDALCKN-QNLDKATALFMKMKERGIQPNKYT 397

Query: 280 FKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEM 339
           +    +    G   + A+ ++  ++ + G R +   YN+MIS  C       A+ +  +M
Sbjct: 398 YTALIDGLCKGGRHKNAQKLFQHLLVK-GCRINVWTYNVMISGLCKEGMLDEALAMKSKM 456

Query: 340 VYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
             NG  PD  T+ I+   L +  +  +A  L +EM+
Sbjct: 457 EENGCIPDAVTFEIIIRSLFEKDQNDKAEKLLHEMI 492


>gi|242036829|ref|XP_002465809.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
 gi|241919663|gb|EER92807.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
          Length = 649

 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 93/368 (25%), Positives = 162/368 (44%), Gaps = 27/368 (7%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVM 161
            +N V+  L K+  FD   +  ++M + +V   + +F  +   +     V++A+  +  M
Sbjct: 229 TFNSVLKGLCKHRRFDKAKEVFRAMDQCSVAPDVRSFNILIGGFCRVGEVEEAMKFYKEM 288

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDG-RIKPDNDTYAILLEGWEKERDV 220
           +Q G   DV + + L+      GK   A  +LR + G  + PD   Y +++ G+ +   +
Sbjct: 289 QQRGVTPDVVSFSCLIGLFSTRGKMDHAAAYLREMKGLGLVPDGVIYTMVIGGFCRAGSM 348

Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGM-TF 279
           + A +   EMV  +G  PD V  Y++ L  L K    + +    L  M ERG  P + TF
Sbjct: 349 SEALRVRDEMV-GLGCLPD-VVTYNTLLNGLCKQ-HRLLDAEELLNEMKERGVTPDLCTF 405

Query: 280 FKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEM 339
             L    C  G   +  +     +  R+  RPD   YN +I   C   +   A +L D+M
Sbjct: 406 TTLIHGYCRDGNFEKALQLFDTLLHQRL--RPDVVAYNSLIDGMCRKGDLAKANELWDDM 463

Query: 340 VYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDP 399
                FP+  TY+IL +   +  ++ EA G  +EMV   N+ N     + ++ Y  S + 
Sbjct: 464 HAREIFPNHVTYSILIDSHCEKGQVEEAFGFLDEMVSKGNLPNIMTYNSIIKGYCRSGNV 523

Query: 400 YVAIKFWKYMIENHCSDLSETGNLLVAGLC---DMH-------------MLPEAVKY--- 440
               +F + M++++      T N L+ G     +MH             + P+AV Y   
Sbjct: 524 KKGQQFLQKMMQDNILPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVQPDAVTYNMI 583

Query: 441 AKGMAEKG 448
             G +E+G
Sbjct: 584 INGFSEQG 591



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 89/349 (25%), Positives = 133/349 (38%), Gaps = 62/349 (17%)

Query: 49  TPSPTVEDVLDKTLI--RVSQETVEQV-LKFSYSHPGPAVKFFR---------W-----S 91
           TP P V D+L +T    R  +E  E   L   +  P PA              W      
Sbjct: 84  TPQPQVFDLLIRTYTQSRKPREAFEAFRLLLDHRVPVPASASNALLAALSRAGWPHLAEE 143

Query: 92  AYQL----NDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYV 146
           AY+L    + + + Y  N++V    K+  FD     I  M+K  V   + T   +  +  
Sbjct: 144 AYRLVLSSDSEVNAYTLNIMVHSYCKSLEFDKADTVISEMEKRCVFPDVVTHNVLIDARF 203

Query: 147 VADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDG-RIKPDND 205
            A  V  AI   D M   G K  +   NS+L  +C+  +   A +  R +D   + PD  
Sbjct: 204 RAGDVDAAIALVDSMANKGLKPGIVTFNSVLKGLCKHRRFDKAKEVFRAMDQCSVAPDVR 263

Query: 206 TYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSL 265
           ++ IL+ G+ +  +V  A K +                                      
Sbjct: 264 SFNILIGGFCRVGEVEEAMKFY-------------------------------------- 285

Query: 266 KRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCY 325
           K M +RG  P +  F        T   +  A      M G +G  PD  +Y M+I  +C 
Sbjct: 286 KEMQQRGVTPDVVSFSCLIGLFSTRGKMDHAAAYLREMKG-LGLVPDGVIYTMVIGGFCR 344

Query: 326 SNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
           +     A+++ DEMV  G  PD+ TYN L   L K  +L +A  L NEM
Sbjct: 345 AGSMSEALRVRDEMVGLGCLPDVVTYNTLLNGLCKQHRLLDAEELLNEM 393



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 71/272 (26%), Positives = 122/272 (44%), Gaps = 7/272 (2%)

Query: 106 LVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVMEQY 164
           L+  L  ++ L DA  + +  MK+  V   L TF ++   Y      + A+  FD +   
Sbjct: 373 LLNGLCKQHRLLDA-EELLNEMKERGVTPDLCTFTTLIHGYCRDGNFEKALQLFDTLLHQ 431

Query: 165 GCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVANA 223
             + DV A NSL+  +CR G    A +    +  R I P++ TY+IL++   ++  V  A
Sbjct: 432 RLRPDVVAYNSLIDGMCRKGDLAKANELWDDMHAREIFPNHVTYSILIDSHCEKGQVEEA 491

Query: 224 KKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLA 283
                EMV + G  P N+  Y+S +    +  + + +    L++MM+    P +  F   
Sbjct: 492 FGFLDEMVSK-GNLP-NIMTYNSIIKGYCRSGN-VKKGQQFLQKMMQDNILPDLITFNTL 548

Query: 284 FEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNG 343
               +  +N+ GA  ++  M   +  +PD   YNM+I+ +        A ++  +M  +G
Sbjct: 549 IHGYIKEENMHGAFNVFNIMEKEM-VQPDAVTYNMIINGFSEQGNMEEAGRVFKKMGASG 607

Query: 344 AFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
             PD  TY  L    V      EA  L +EM+
Sbjct: 608 IEPDRYTYMSLINGHVTAGNSKEAFQLHDEMM 639



 Score = 45.1 bits (105), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 38/159 (23%), Positives = 64/159 (40%), Gaps = 28/159 (17%)

Query: 312 DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLF 371
           + +  N+M+  YC S E   A  ++ EM     FPD+ T+N+L +   +   +  A  L 
Sbjct: 156 NAYTLNIMVHSYCKSLEFDKADTVISEMEKRCVFPDVVTHNVLIDARFRAGDVDAAIALV 215

Query: 372 NEMVKN-------------ENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLS 418
           + M                + +  H     A  V+   D   VA     +          
Sbjct: 216 DSMANKGLKPGIVTFNSVLKGLCKHRRFDKAKEVFRAMDQCSVAPDVRSF---------- 265

Query: 419 ETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALS 457
              N+L+ G C +  + EA+K+ K M ++G  VTP  +S
Sbjct: 266 ---NILIGGFCRVGEVEEAMKFYKEMQQRG--VTPDVVS 299


>gi|255582957|ref|XP_002532249.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223528067|gb|EEF30143.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 507

 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 97/410 (23%), Positives = 174/410 (42%), Gaps = 12/410 (2%)

Query: 48  NTPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLV 107
           ++P+  +E  L +    V+++ + +VLK   S   PA+ FF W +          A+N +
Sbjct: 61  DSPTRKIELALTQCNPTVTEDLILKVLKRHRSDWKPALIFFNWVSKGGKVLMGSGAYNEI 120

Query: 108 VDLLGKNCLFDAMWDAIKSM-KKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGC 166
           +D+LGK   FD +   +  M K+E +++  T+  + + Y  A +V++AI  F+     G 
Sbjct: 121 LDILGKMRRFDELSQVLDIMSKREGLVNEETYRVLVNRYAAAHKVEEAIEIFNTRRDIGL 180

Query: 167 KHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKT 226
           + D+ +  +LL  +CR      A   L         D  T  I+L GW    +V  AK+ 
Sbjct: 181 EIDLVSFQNLLMFLCRYKHVQIAESLLYSKGKDFGMDIKTMNIVLNGWCVLGNVHEAKR- 239

Query: 227 FGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMM-ERGCNPGMTFFKLAFE 285
           F + +I     PD +  Y +++  L K   G   T   + R M E+ C P +       +
Sbjct: 240 FWKDIIGSKCKPD-LFTYGTFIKALTK--KGKLGTALKIYRAMWEKQCKPDVVICNCIID 296

Query: 286 ECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMV--YNG 343
                  +  A  ++  M  + G  P+   YN +I  +          +LLDEM+     
Sbjct: 297 ALCFKNRVPEALEVFREM-SQQGCLPNGATYNSLIKHFSRIRRMEKVYELLDEMLDKKGS 355

Query: 344 AFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAI 403
             PD  T+N L + L K  +L     +   M +N  +++ +     +R+Y D D      
Sbjct: 356 CMPDHITFNYLLKALKKPEEL---PLVLERMERNGCMISTDTYNLILRLYADWDCEERVG 412

Query: 404 KFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTP 453
             W  M +        +  +++  L +   + +A+ Y   M  KG+   P
Sbjct: 413 DTWNEMEKLGLGPDRRSYTIMIHWLYEKGRINDALHYFGEMTSKGMVSEP 462



 Score = 46.2 bits (108), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 51/231 (22%), Positives = 90/231 (38%), Gaps = 11/231 (4%)

Query: 122 DAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAIC 181
           D I S  K ++ +  TF    +      ++  A+  +  M +  CK DV   N ++ A+C
Sbjct: 243 DIIGSKCKPDLFTYGTFIKALTK---KGKLGTALKIYRAMWEKQCKPDVVICNCIIDALC 299

Query: 182 RDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVG-WDPD 239
              +  +A +  R +  +   P+  TY  L++ + + R +    +   EM+ + G   PD
Sbjct: 300 FKNRVPEALEVFREMSQQGCLPNGATYNSLIKHFSRIRRMEKVYELLDEMLDKKGSCMPD 359

Query: 240 NVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFI 299
           ++    +YL+  LK  +   E    L+RM   GC      + L                 
Sbjct: 360 HITF--NYLLKALKKPE---ELPLVLERMERNGCMISTDTYNLILRLYADWDCEERVGDT 414

Query: 300 WGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQT 350
           W  M  ++G  PD   Y +MI           A+    EM   G   + +T
Sbjct: 415 WNEM-EKLGLGPDRRSYTIMIHWLYEKGRINDALHYFGEMTSKGMVSEPRT 464


>gi|449462483|ref|XP_004148970.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 917

 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 78/256 (30%), Positives = 120/256 (46%), Gaps = 17/256 (6%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDA-WQFLRV 195
           +++ +        R  +A   F  M+  G   DV +  SL+   CR GK  DA + F  +
Sbjct: 641 SYSIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYLFNEM 700

Query: 196 VDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG- 254
           VD  ++PD  T+++L++   KE  V  A +   E++I+ G  P+ V    +Y  TL+KG 
Sbjct: 701 VDIGVQPDVTTFSVLIDMLCKEGKVIEANELL-EVMIQRGCIPNTV----TY-TTLVKGL 754

Query: 255 C--DGIYETVNSLKRMMERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIG--- 308
           C  D I E      +M + GC P + T+  L    C TG N++ A  +   M+   G   
Sbjct: 755 CMNDRISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQTG-NIKTALELHKKMLSDTGQYG 813

Query: 309 --FRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWE 366
             F+PD   Y+++I   C       A +L  EM   G  P++ +Y  L     +  KL +
Sbjct: 814 TNFKPDVISYSIIIDGLCKHGREDEARELFKEMKALGVIPNVISYTSLIHGFCRSGKLED 873

Query: 367 ASGLFNEMVKNENVLN 382
           A  LFNEMV     LN
Sbjct: 874 AKHLFNEMVDQGVQLN 889



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 97/373 (26%), Positives = 157/373 (42%), Gaps = 44/373 (11%)

Query: 132 VLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ 191
           +L + T++++     +  R+ +A   F  M++ GC+ D  A  +L+  +C+ GK   A  
Sbjct: 267 ILDIVTYSTLIKGLCMKHRISEATQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALH 326

Query: 192 FLRVVDGR--------IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPA 243
             + +           I+PD  T ++L++   KE  V  A +   E++I+ G   D +  
Sbjct: 327 LHQEMLNDTSQYGIKCIRPDVTTSSMLIDILCKEGKVIEANELL-EVMIQRGCILD-IVT 384

Query: 244 YDSYLITLLKG-C--DGIYETVNSLKRMMERGCNP-GMTFFKLAFEECLTGQNLRGAEFI 299
           Y     TL+KG C    I E       M + GC P  +T+  L    C TG N+  A  +
Sbjct: 385 YS----TLIKGLCMEHRISEATWLFMSMQKLGCRPDAITYGTLMKGLCQTG-NINIALQL 439

Query: 300 WGAMV---GRIGF--RPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNIL 354
              M+   GR G   +P    Y+++I   C       A +L +EM   G  PD+ +Y  L
Sbjct: 440 HQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRREDEARELFEEMKAQGIMPDVISYTTL 499

Query: 355 FE-FLVKGRKLWE-ASGLFNEM--------VKNENVLNHENCRAAVRVYMDSDDPYVAIK 404
              F + G+  WE A  LFNEM        V   +VL    C+    +         A K
Sbjct: 500 IHGFCLSGK--WEKAKCLFNEMLDVGIQPDVTTSSVLIDMLCKKGKVIE--------ANK 549

Query: 405 FWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILI 464
             + +I+  C     T   LV GLC  H + +A +    M + G        + L + L 
Sbjct: 550 LLEVVIQRGCILDVVTCTTLVKGLCMKHRISKATQLFLKMQKLGCMPNVVTCATLMKGLC 609

Query: 465 KARKEAVYEELLK 477
           ++    +  EL K
Sbjct: 610 QSGNIKIALELHK 622



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 96/407 (23%), Positives = 175/407 (42%), Gaps = 26/407 (6%)

Query: 93  YQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRV 151
           Y +  K +  ++++++D L K+   D   +  + MK + ++  + ++ ++   + ++ + 
Sbjct: 450 YGIKCKPTLISYSIIIDGLCKDRREDEARELFEEMKAQGIMPDVISYTTLIHGFCLSGKW 509

Query: 152 KDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAIL 210
           + A   F+ M   G + DV   + L+  +C+ GK I+A + L VV  R    D  T   L
Sbjct: 510 EKAKCLFNEMLDVGIQPDVTTSSVLIDMLCKKGKVIEANKLLEVVIQRGCILDVVTCTTL 569

Query: 211 LEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG-CDG--IYETVNSLKR 267
           ++G   +  ++ A + F +M  ++G  P+ V        TL+KG C    I   +   K 
Sbjct: 570 VKGLCMKHRISKATQLFLKMQ-KLGCMPNVVTCA-----TLMKGLCQSGNIKIALELHKN 623

Query: 268 MMER------GCNPGMTFFKLAFEE-CLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMI 320
           M+         C P    + +  +  C  G+     E      +  +G  PD   Y  +I
Sbjct: 624 MLSDTSPYGINCKPNAISYSIIIDGLCKCGREDEARELF--KEMKALGVIPDVISYTSLI 681

Query: 321 SLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENV 380
             +C S +   A  L +EMV  G  PD+ T+++L + L K  K+ EA+ L   M++   +
Sbjct: 682 HGFCRSGKWKDAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCI 741

Query: 381 LNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKY 440
            N       V+    +D    A + +  M +  C     T   L+ GLC    +  A++ 
Sbjct: 742 PNTVTYTTLVKGLCMNDRISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALEL 801

Query: 441 AKGM----AEKGIQVTP--FALSKLKQILIKARKEAVYEELLKKCKA 481
            K M     + G    P   + S +   L K  +E    EL K+ KA
Sbjct: 802 HKKMLSDTGQYGTNFKPDVISYSIIIDGLCKHGREDEARELFKEMKA 848



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 98/395 (24%), Positives = 164/395 (41%), Gaps = 69/395 (17%)

Query: 93  YQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRV 151
           Y +  K +  ++++++D L K+   D   +  K MK + ++  + ++ S+   +  + + 
Sbjct: 157 YGIKCKPTLISYSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCHSGKW 216

Query: 152 KDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAIL 210
           + A   F+ M   G + DV     L+   C++GK I+A + L V+  R    D  TY+ L
Sbjct: 217 EKAKCLFNEMLDVGIQPDVTTSGVLIDMFCKEGKVIEANELLEVMVHRGCILDIVTYSTL 276

Query: 211 LEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMME 270
           ++G   +  ++ A + F  M  ++G  PD + AY     TL+KG                
Sbjct: 277 IKGLCMKHRISEATQLFMSMK-KLGCRPDAI-AYG----TLMKGL--------------- 315

Query: 271 RGCNPGMTFFKLAF-EECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNET 329
             C  G     L   +E L   +  G + I          RPD    +M+I + C   + 
Sbjct: 316 --CQTGKINIALHLHQEMLNDTSQYGIKCI----------RPDVTTSSMLIDILCKEGKV 363

Query: 330 GAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAA 389
             A +LL+ M+  G   DI TY+ L + L    ++ EA+ LF  M K         CR  
Sbjct: 364 IEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEATWLFMSMQK-------LGCRPD 416

Query: 390 VRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
                       AI +   M       L +TGN+ +A      ML +  +Y       GI
Sbjct: 417 ------------AITYGTLM-----KGLCQTGNINIALQLHQEMLNDTGRY-------GI 452

Query: 450 QVTPFALSKLKQI--LIKARKEAVYEELLKKCKAH 482
           +  P  +S    I  L K R+E    EL ++ KA 
Sbjct: 453 KCKPTLISYSIIIDGLCKDRREDEARELFEEMKAQ 487



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 112/236 (47%), Gaps = 15/236 (6%)

Query: 150 RVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDA-WQFLRVVDGRIKPDNDTYA 208
           +V +A    +VM Q GC  D+   ++L+  +C + +  +A W F+ +     +PD  TY 
Sbjct: 69  KVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEATWLFMSMQKLGCRPDAITYG 128

Query: 209 ILLEGWEKERDVANAKKTFGEMVIEVG-WDPDNVPAYDSYLITLLKGCDGIY------ET 261
            L++G  +  ++  A +   EM+ + G +     P   SY I +    DG+       E 
Sbjct: 129 TLMKGLCQTGNINIALQLHQEMLNDTGRYGIKCKPTLISYSIII----DGLCKDRREDEA 184

Query: 262 VNSLKRMMERGCNPG-MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMI 320
               K M  +G  P  +++  L    C +G+    A+ ++  M+  +G +PD     ++I
Sbjct: 185 RELFKEMKAQGMMPDVISYTSLIHGFCHSGK-WEKAKCLFNEML-DVGIQPDVTTSGVLI 242

Query: 321 SLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK 376
            ++C   +   A +LL+ MV+ G   DI TY+ L + L    ++ EA+ LF  M K
Sbjct: 243 DMFCKEGKVIEANELLEVMVHRGCILDIVTYSTLIKGLCMKHRISEATQLFMSMKK 298



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 79/298 (26%), Positives = 138/298 (46%), Gaps = 20/298 (6%)

Query: 91  SAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVAD 149
           S Y +N K +  ++++++D L K    D   +  K MK   V+  + ++ S+   +  + 
Sbjct: 629 SPYGINCKPNAISYSIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSG 688

Query: 150 RVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYA 208
           + KDA   F+ M   G + DV   + L+  +C++GK I+A + L V+  R   P+  TY 
Sbjct: 689 KWKDAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYT 748

Query: 209 ILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG-CD-GIYETVNSLK 266
            L++G      ++ A + F +M  ++G  PD V  Y     TL+KG C  G  +T   L 
Sbjct: 749 TLVKGLCMNDRISEATQLFMKMQ-KLGCLPD-VVTYG----TLMKGLCQTGNIKTALELH 802

Query: 267 RMMERGCNPGMTFFK---LAFEECLTGQNLRG----AEFIWGAMVGRIGFRPDTHMYNMM 319
           + M        T FK   +++   + G    G    A  ++  M   +G  P+   Y  +
Sbjct: 803 KKMLSDTGQYGTNFKPDVISYSIIIDGLCKHGREDEARELFKEMKA-LGVIPNVISYTSL 861

Query: 320 ISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKN 377
           I  +C S +   A  L +EMV  G   +  TY+++     K  ++ +A  LF +M  N
Sbjct: 862 IHGFCRSGKLEDAKHLFNEMVDQGVQLNAVTYSVMIHGFCKEGQIDKA--LFQKMEAN 917



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 84/363 (23%), Positives = 141/363 (38%), Gaps = 66/363 (18%)

Query: 117 FDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSL 176
           F+ + + + ++K+ N   LA  A +     + D V            Y  + DV   + L
Sbjct: 13  FNILINCLCNVKRVNE-GLAAMAGIMRRGYIPDIV-----------TYSIRPDVTTSSML 60

Query: 177 LSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVG 235
           +  +C++GK I+A + L V+  R    D  TY+ L++G   E  ++ A   F  M  ++G
Sbjct: 61  IDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEATWLFMSMQ-KLG 119

Query: 236 WDPDNVPAYDSYLITLLKG-CDGI---------YETVNSLKRMMERGCNPGMTFFKLAFE 285
             PD +  Y     TL+KG C             E +N   R   + C P +  + +  +
Sbjct: 120 CRPDAI-TYG----TLMKGLCQTGNINIALQLHQEMLNDTGRYGIK-CKPTLISYSIIID 173

Query: 286 ECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAF 345
                +    A  ++  M  + G  PD   Y  +I  +C+S +   A  L +EM+  G  
Sbjct: 174 GLCKDRREDEARELFKEMKAQ-GMMPDVISYTSLIHGFCHSGKWEKAKCLFNEMLDVGIQ 232

Query: 346 PDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKF 405
           PD+ T  +L +   K  K+ EA+ L   MV       H  C   +  Y            
Sbjct: 233 PDVTTSGVLIDMFCKEGKVIEANELLEVMV-------HRGCILDIVTY------------ 273

Query: 406 WKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIK 465
                           + L+ GLC  H + EA +    M + G +    A   L + L +
Sbjct: 274 ----------------STLIKGLCMKHRISEATQLFMSMKKLGCRPDAIAYGTLMKGLCQ 317

Query: 466 ARK 468
             K
Sbjct: 318 TGK 320



 Score = 44.3 bits (103), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 46/190 (24%), Positives = 77/190 (40%), Gaps = 15/190 (7%)

Query: 308 GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNI---------LFEFL 358
           G  PD+  +N++I+  C        +  +  ++  G  PDI TY+I         L + L
Sbjct: 5   GLFPDSFTFNILINCLCNVKRVNEGLAAMAGIMRRGYIPDIVTYSIRPDVTTSSMLIDIL 64

Query: 359 VKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLS 418
            K  K+ EA+ L   M++   +L+       ++          A   +  M +  C   +
Sbjct: 65  CKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEATWLFMSMQKLGCRPDA 124

Query: 419 ETGNLLVAGLCDMHMLPEAVKYAKGM----AEKGIQVTPFALSKLKQI--LIKARKEAVY 472
            T   L+ GLC    +  A++  + M       GI+  P  +S    I  L K R+E   
Sbjct: 125 ITYGTLMKGLCQTGNINIALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRREDEA 184

Query: 473 EELLKKCKAH 482
            EL K+ KA 
Sbjct: 185 RELFKEMKAQ 194


>gi|297738031|emb|CBI27232.3| unnamed protein product [Vitis vinifera]
          Length = 660

 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 96/396 (24%), Positives = 175/396 (44%), Gaps = 20/396 (5%)

Query: 81  PGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWD------AIKSMKKENVLS 134
           P  A++ F     +   + +  ++N V++++ +  LF    +        K+    NVLS
Sbjct: 131 PEKAIELFGRMVDEFQCRRTVRSFNSVLNVIIQEGLFHRALEFYECGVGGKTNISPNVLS 190

Query: 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL- 193
                       + DR   AI  F  M    C+ DVF   +L+  +C++ +  +A   L 
Sbjct: 191 FNLVIKAMCKLGLVDR---AIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLLLD 247

Query: 194 -RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITL- 251
              ++G   P + T+ +L+ G  K+ D+    K    M ++ G  P+ V  Y++ +  L 
Sbjct: 248 EMQIEGCF-PSSVTFNVLINGLCKKGDMVRVTKLVDNMFLK-GCVPNEV-TYNTIINGLC 304

Query: 252 LKGCDGIYETVNSLKRMMERGCNPG-MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFR 310
           LKG   + + V+ L RM+   C P  +T+  L       G+++ G   +  + +   G  
Sbjct: 305 LKG--KLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLL--SSLEERGHH 360

Query: 311 PDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGL 370
            + + Y+ +IS      ++  AM L  +MV  G  P+I  Y+ L + L +  KL EA  +
Sbjct: 361 ANEYAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEI 420

Query: 371 FNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCD 430
             EMV      N     + ++ +  + +   AI+ WK M +N+C       ++L+ GLC+
Sbjct: 421 LCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCE 480

Query: 431 MHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKA 466
              L EA+     M  +G++    A S +   L  A
Sbjct: 481 DGKLREAMMMWTHMLGRGLRPDVVAYSSMIHGLCNA 516



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 68/251 (27%), Positives = 116/251 (46%), Gaps = 23/251 (9%)

Query: 136 ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDA---WQF 192
            T+ ++ +  V   R  D +     +E+ G   + +A ++L+S + ++ K+ +A   W+ 
Sbjct: 329 VTYGTLINGLVKQGRSVDGVHLLSSLEERGHHANEYAYSTLISGLFKEEKSEEAMGLWK- 387

Query: 193 LRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
            ++V+   +P+   Y+ L++G  +E  +  AK+   EMV + G  P N   Y S +    
Sbjct: 388 -KMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEMVNK-GCTP-NAFTYSSLI---- 440

Query: 253 KGCDGIYETVNSLK------RMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGR 306
               G ++T NS K       M +  C P    + +          LR A  +W  M+GR
Sbjct: 441 ---KGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCEDGKLREAMMMWTHMLGR 497

Query: 307 IGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVY--NGAFPDIQTYNILFEFLVKGRKL 364
            G RPD   Y+ MI   C +      +KL +EM+   + + PD+ TYNIL   L K   +
Sbjct: 498 -GLRPDVVAYSSMIHGLCNAGSVEVGLKLFNEMLCQESDSQPDVVTYNILLRALCKQNSI 556

Query: 365 WEASGLFNEMV 375
             A  L N M+
Sbjct: 557 SHAIDLLNSML 567



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 81/371 (21%), Positives = 150/371 (40%), Gaps = 13/371 (3%)

Query: 84  AVKFFRWSAYQLNDKHSP--YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFAS 140
           A++ FR  A Q   K  P  + +  ++D L K    D     +  M+ E    S  TF  
Sbjct: 207 AIEVFREMAIQ---KCEPDVFTYCTLMDGLCKEDRIDEAVLLLDEMQIEGCFPSSVTFNV 263

Query: 141 VFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGR 199
           + +       +       D M   GC  +    N++++ +C  GK   A   L R+V  +
Sbjct: 264 LINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLKGKLDKAVSLLDRMVASK 323

Query: 200 IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIY 259
             P++ TY  L+ G  K+    +       +  E      N  AY + +  L K  +   
Sbjct: 324 CVPNDVTYGTLINGLVKQGRSVDGVHLLSSL--EERGHHANEYAYSTLISGLFKE-EKSE 380

Query: 260 ETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMM 319
           E +   K+M+E+GC P +  +    +       L  A+ I   MV + G  P+   Y+ +
Sbjct: 381 EAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEMVNK-GCTPNAFTYSSL 439

Query: 320 ISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNEN 379
           I  +  +  +  A+++  EM  N   P+   Y++L   L +  KL EA  ++  M+    
Sbjct: 440 IKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCEDGKLREAMMMWTHMLGRGL 499

Query: 380 VLNHENCRAAVRVYMDSDDPYVAIKFWKYMI--ENHCSDLSETGNLLVAGLCDMHMLPEA 437
             +     + +    ++    V +K +  M+  E+       T N+L+  LC  + +  A
Sbjct: 500 RPDVVAYSSMIHGLCNAGSVEVGLKLFNEMLCQESDSQPDVVTYNILLRALCKQNSISHA 559

Query: 438 VKYAKGMAEKG 448
           +     M ++G
Sbjct: 560 IDLLNSMLDRG 570



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 96/366 (26%), Positives = 148/366 (40%), Gaps = 46/366 (12%)

Query: 117 FDAMWDAIKSMKKEN-VLSLATFASVFSSYVVADRVKDAITTFDVM-EQYGCKHDVFALN 174
           F  ++     MK+E  V     F  VF +Y  A   + AI  F  M +++ C+  V + N
Sbjct: 96  FGTLFQVFDRMKRERRVFIEKNFILVFRAYGKAHLPEKAIELFGRMVDEFQCRRTVRSFN 155

Query: 175 SLLSAICRDGKTIDAWQFLRV-VDGR--IKPDNDTYAILLEGWEKERDVANAKKTFGEMV 231
           S+L+ I ++G    A +F    V G+  I P+  ++ ++++   K   V  A + F EM 
Sbjct: 156 SVLNVIIQEGLFHRALEFYECGVGGKTNISPNVLSFNLVIKAMCKLGLVDRAIEVFREMA 215

Query: 232 IEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPG-MTFFKLAFEECLTG 290
           I+   +PD V  Y + +  L K  D I E V  L  M   GC P  +TF  L    C  G
Sbjct: 216 IQ-KCEPD-VFTYCTLMDGLCKE-DRIDEAVLLLDEMQIEGCFPSSVTFNVLINGLCKKG 272

Query: 291 QNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQT 350
             +R  + +    +   G  P+   YN +I+  C   +   A+ LLD MV +   P+  T
Sbjct: 273 DMVRVTKLVDNMFLK--GCVPNEVTYNTIINGLCLKGKLDKAVSLLDRMVASKCVPNDVT 330

Query: 351 YNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMI 410
           Y  L   LVK  +  +   L + +   E   +H N  A                      
Sbjct: 331 YGTLINGLVKQGRSVDGVHLLSSL---EERGHHANEYAY--------------------- 366

Query: 411 ENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEA 470
                      + L++GL       EA+   K M EKG Q      S L   L +  K  
Sbjct: 367 -----------STLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLD 415

Query: 471 VYEELL 476
             +E+L
Sbjct: 416 EAKEIL 421



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/226 (23%), Positives = 103/226 (45%), Gaps = 9/226 (3%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RV 195
            ++++ S     ++ ++A+  +  M + GC+ ++   ++L+  +CR+GK  +A + L  +
Sbjct: 365 AYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEM 424

Query: 196 VDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
           V+    P+  TY+ L++G+ K  +   A + + EM        + VP    Y + +   C
Sbjct: 425 VNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMA-----KNNCVPNEICYSVLIHGLC 479

Query: 256 -DG-IYETVNSLKRMMERGCNPGMTFFK-LAFEECLTGQNLRGAEFIWGAMVGRIGFRPD 312
            DG + E +     M+ RG  P +  +  +    C  G    G +     +      +PD
Sbjct: 480 EDGKLREAMMMWTHMLGRGLRPDVVAYSSMIHGLCNAGSVEVGLKLFNEMLCQESDSQPD 539

Query: 313 THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFL 358
              YN+++   C  N    A+ LL+ M+  G  PD+ T NI    L
Sbjct: 540 VVTYNILLRALCKQNSISHAIDLLNSMLDRGCNPDLITCNIFLNAL 585


>gi|359488009|ref|XP_003633686.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 579

 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 81/328 (24%), Positives = 142/328 (43%), Gaps = 13/328 (3%)

Query: 136 ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-R 194
           ATF ++     V  ++ +A+  FD M   G + DV    +L++ +C+ G T  A + L  
Sbjct: 132 ATFTTLIRGIYVEGKIGEALHLFDKMIGEGFRPDVVTYGTLINGLCKVGNTSAAIRLLGS 191

Query: 195 VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG 254
           +V    +P+   Y  +++   K+R V  A   F EMV + G  PD +  Y+S +  L   
Sbjct: 192 MVQKNCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTK-GISPD-IFTYNSLIHALCNL 249

Query: 255 CDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTH 314
           C+  +     L  M++    P +  F    +       +  A  +   M+ R G  P+  
Sbjct: 250 CEWKH-VATLLNEMVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQR-GVEPNVV 307

Query: 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
            Y  ++  +C  +E   A+K+ D MV  G  P++ +YN L     K +++ +A  LF EM
Sbjct: 308 TYTALMDGHCLLSEMDEAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAMYLFGEM 367

Query: 375 VKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSE--TGNLLVAGLCDMH 432
            + E + +       +      +    AI  +  M+   CS +    T  +L+  LC   
Sbjct: 368 CRQELIPDTVTYSTLIHGLCHVERLQDAIALFHEMVA--CSQIPNLVTYRILLDYLCKNR 425

Query: 433 MLPEAVKYAKGMA----EKGIQVTPFAL 456
            L EA+   K +     +  IQV   A+
Sbjct: 426 YLAEAMALLKAIEGSNLDPDIQVNNIAI 453



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 85/331 (25%), Positives = 136/331 (41%), Gaps = 43/331 (12%)

Query: 138 FASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL---- 193
           + ++  S     +V +A   F  M   G   D+F  NSL+ A+C     +  W+ +    
Sbjct: 204 YNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALC----NLCEWKHVATLL 259

Query: 194 -RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYL--IT 250
             +VD +I PD  ++  +++   KE  V  A     +M I+ G +P NV  Y + +    
Sbjct: 260 NEMVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKM-IQRGVEP-NVVTYTALMDGHC 317

Query: 251 LLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFR 310
           LL   D   E V     M+ +GC P +  +          Q +  A +++G M  R    
Sbjct: 318 LLSEMD---EAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMC-RQELI 373

Query: 311 PDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGL 370
           PDT  Y+ +I   C+      A+ L  EMV     P++ TY IL ++L K R L EA  L
Sbjct: 374 PDTVTYSTLIHGLCHVERLQDAIALFHEMVACSQIPNLVTYRILLDYLCKNRYLAEAMAL 433

Query: 371 FNEM--------VKNENVLNHENCRA-----AVRVYMDSDDPYVAIKFWKYMIENHCSDL 417
              +        ++  N+     CRA     A  ++ +     +    W Y I       
Sbjct: 434 LKAIEGSNLDPDIQVNNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVWTYSI------- 486

Query: 418 SETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448
                 ++ GLC   +L EA K  + M E G
Sbjct: 487 ------MINGLCRRGLLDEASKLFREMDENG 511



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 82/330 (24%), Positives = 132/330 (40%), Gaps = 41/330 (12%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVM 161
           ++N VVD L K        D +  M +  V  ++ T+ ++   + +   + +A+  FD M
Sbjct: 273 SFNTVVDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAVKVFDTM 332

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDA-WQFLRVVDGRIKPDNDTYAILLEGWEKERDV 220
              GC  +V + N+L++  C+  +   A + F  +    + PD  TY+ L+ G      +
Sbjct: 333 VCKGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVERL 392

Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFF 280
            +A   F EMV         +P   +Y I L   C   Y     L   M           
Sbjct: 393 QDAIALFHEMVA-----CSQIPNLVTYRILLDYLCKNRY-----LAEAM----------- 431

Query: 281 KLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMV 340
             A  + + G NL                 PD  + N+ I   C + E  AA  L   + 
Sbjct: 432 --ALLKAIEGSNLD----------------PDIQVNNIAIDGMCRAGELEAARDLFSNLS 473

Query: 341 YNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPY 400
             G  PD+ TY+I+   L +   L EAS LF EM +N   LN        R ++ +++  
Sbjct: 474 SKGLQPDVWTYSIMINGLCRRGLLDEASKLFREMDENGCTLNGCIYNTITRGFLRNNETS 533

Query: 401 VAIKFWKYMIENHCSDLSETGNLLVAGLCD 430
            AI+  + M+    S  + T  L V  L D
Sbjct: 534 RAIQLLQEMVARGFSADASTMTLFVKMLSD 563



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 71/289 (24%), Positives = 111/289 (38%), Gaps = 40/289 (13%)

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERD 219
           M+ +G   +++ L+ L+++ C   +   A+  L +++    +PD  T+  L+ G   E  
Sbjct: 87  MDSFGIPPNIYTLHILINSFCHLNRVGFAFSVLAKILKLGHQPDTATFTTLIRGIYVEGK 146

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTF 279
           +  A   F +M+ E G+ PD V  Y     TL+ G                  C  G   
Sbjct: 147 IGEALHLFDKMIGE-GFRPD-VVTYG----TLINGL-----------------CKVG--- 180

Query: 280 FKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEM 339
                       N   A  + G+MV +   +P+   YN +I   C   +   A  L  EM
Sbjct: 181 ------------NTSAAIRLLGSMVQK-NCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEM 227

Query: 340 VYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDP 399
           V  G  PDI TYN L   L    +    + L NEMV ++ + +  +    V         
Sbjct: 228 VTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVVDALCKEGKV 287

Query: 400 YVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448
             A      MI+        T   L+ G C +  + EAVK    M  KG
Sbjct: 288 TEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAVKVFDTMVCKG 336



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 66/163 (40%), Gaps = 14/163 (8%)

Query: 308 GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEA 367
           G  P+ +  +++I+ +C+ N  G A  +L +++  G  PD  T+  L   +    K+ EA
Sbjct: 91  GIPPNIYTLHILINSFCHLNRVGFAFSVLAKILKLGHQPDTATFTTLIRGIYVEGKIGEA 150

Query: 368 SGLFNEMVKNENVLNHENCRAAVRVY-------MDSDDPYVAIKFWKYMIENHCSDLSET 420
             LF++M+        E  R  V  Y           +   AI+    M++ +C      
Sbjct: 151 LHLFDKMIG-------EGFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFA 203

Query: 421 GNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQIL 463
            N ++  LC    + EA      M  KGI    F  + L   L
Sbjct: 204 YNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHAL 246


>gi|147866209|emb|CAN83683.1| hypothetical protein VITISV_017537 [Vitis vinifera]
          Length = 833

 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 90/377 (23%), Positives = 149/377 (39%), Gaps = 57/377 (15%)

Query: 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDV 160
           + + +++D L +    +      + M K  +   + TF ++ + Y     V  A     V
Sbjct: 270 HTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSV 329

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERD 219
           ME+  CK ++   N L+  +CR  K+  A+  L RVVD  + PD  TY IL++G+ KE  
Sbjct: 330 MEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQ 389

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTF 279
           +  A   F  M    G +PD                                    G TF
Sbjct: 390 LNMAFNIFNSMN-SAGLEPD------------------------------------GFTF 412

Query: 280 FKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEM 339
             L    C  G+ L  A  I G+MV + G   D   +  +I  +C   +      L + M
Sbjct: 413 TALIDGLCKLGR-LEQANGILGSMVKK-GISLDEVTFTALIDGHCKIGKAKDVCFLFENM 470

Query: 340 VYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK--------NENVLNHENCRAAVR 391
           V N       T+N   + L K  KL EA+ +  +M+K           +L   +CRA   
Sbjct: 471 VENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAG-- 528

Query: 392 VYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQV 451
                 +  +++K  + M +  CS    T  +++ GLC+   + EA      M+  G+  
Sbjct: 529 ------ETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSP 582

Query: 452 TPFALSKLKQILIKARK 468
             F  + L +  +KA +
Sbjct: 583 NHFTYAVLVKAHVKAGR 599



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 114/243 (46%), Gaps = 16/243 (6%)

Query: 141 VFSSYVVA----DRVKDAITTFDVM-EQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR- 194
           V +S V+A    D + +A   F+ M ++  C+ +    + L+  +C  G+  +A+Q  + 
Sbjct: 165 VCTSLVLANCRRDDLGEAFRVFEKMSKEESCRPNSVTYSILIHGLCEAGRLEEAFQLKQE 224

Query: 195 VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG 254
           +V+   +P   TY +L++          A K   EM  +       VP   +Y I + + 
Sbjct: 225 MVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKA-----CVPNVHTYTILIDRL 279

Query: 255 C-DGIYETVNSL-KRMMERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRP 311
           C +G  E  N + ++M++ G  PG+ TF  L    C  G  +   + +  +++ +   +P
Sbjct: 280 CREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLL--SVMEKGNCKP 337

Query: 312 DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLF 371
           +   YN ++   C  +++  A  LL  +V NG  PD  TYNIL +   K  +L  A  +F
Sbjct: 338 NIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIF 397

Query: 372 NEM 374
           N M
Sbjct: 398 NSM 400



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 92/426 (21%), Positives = 156/426 (36%), Gaps = 68/426 (15%)

Query: 84  AVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFS 143
            V+FF+W   Q     S Y ++L           D     +  +   ++  +A  A V  
Sbjct: 20  GVRFFKWVCRQ-----SSYCYDL-----------DGRIQLLGVLVSRDLFGVAQKAVVLL 63

Query: 144 SYVVADR---VKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGR 199
                D    V   +   D M + G +      ++LL  + +      A+  + R+V+  
Sbjct: 64  IQECEDSENGVVKLMGALDGMTELGFRLSYPCYSTLLMCLAKLNMGFVAFLVYRRMVNEG 123

Query: 200 IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLIT--LLKGC-- 255
                  Y  ++    K   V  A + F   V+ +G+        D+++ T  +L  C  
Sbjct: 124 FVLGGIDYRTVVNALCKNGFV-QAAEMFCCKVLRLGF------GLDTHVCTSLVLANCRR 176

Query: 256 DGIYETVNSLKRMM-ERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTH 314
           D + E     ++M  E  C P    + +          L  A  +   MV + G +P T 
Sbjct: 177 DDLGEAFRVFEKMSKEESCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEK-GCQPSTR 235

Query: 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
            Y ++I   C    T  AMK+LDEM      P++ TY IL + L +  K+ EA+G+F +M
Sbjct: 236 TYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKM 295

Query: 375 VKNE----------------------------NVLNHENCRAAVRVYMD-------SDDP 399
           +K+                             +V+   NC+  +R Y +           
Sbjct: 296 LKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKS 355

Query: 400 YVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKL 459
           Y A    + +++N       T N+LV G C    L  A      M   G++   F  + L
Sbjct: 356 YKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTAL 415

Query: 460 KQILIK 465
              L K
Sbjct: 416 IDGLCK 421



 Score = 47.0 bits (110), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 73/315 (23%), Positives = 125/315 (39%), Gaps = 44/315 (13%)

Query: 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASVFSSYVVADRVKDAITTFDV 160
           + +  ++D L K    +     + SM K+ + L   TF ++   +    + KD    F+ 
Sbjct: 410 FTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFEN 469

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERD 219
           M +  C       N  L A+ +D K  +A   L +++   + P   T+ IL+EG  +  +
Sbjct: 470 MVENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGE 529

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTF 279
            A + K   E + + G  P NV  Y + +I  L     + E    L  M   G +P    
Sbjct: 530 TALSLKML-ERMKQAGCSP-NVYTY-TIIINGLCNNGRVEEAETILFSMSSFGVSPNHFT 586

Query: 280 FKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNET-GA------- 331
           + +  +  +    L  A  I   MV + G +P++H+Y+ ++S +  SN   GA       
Sbjct: 587 YAVLVKAHVKAGRLDRAFQIVSTMV-KNGCQPNSHIYSALLSGFVLSNTAIGARALSSTG 645

Query: 332 -----------------------------AMKLLDEMVYNGAFPDIQTYNILFEFLVKGR 362
                                        A+K+ DE+   G  P    YN L   L K  
Sbjct: 646 DLDARSLSSEENDNNCLSSHVFRLMDVDHALKIRDEIKKCGV-PTEDLYNFLVVGLCKEG 704

Query: 363 KLWEASGLFNEMVKN 377
           ++ EA  L  +MVK+
Sbjct: 705 RIIEADQLTQDMVKH 719



 Score = 45.1 bits (105), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 59/265 (22%), Positives = 110/265 (41%), Gaps = 21/265 (7%)

Query: 100 SPYAWNLVVDLLGKNC-LFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTF 158
           + + +N  +D LGK+  L +A     K MK   V S+ T   +   +  A     ++   
Sbjct: 478 TAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKML 537

Query: 159 DVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDG-RIKPDNDTYAILLEGWEKE 217
           + M+Q GC  +V+    +++ +C +G+  +A   L  +    + P++ TYA+L++   K 
Sbjct: 538 ERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKA 597

Query: 218 RDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGM 277
             +  A +    MV + G  P N   Y + L   +     +  T    + +   G    +
Sbjct: 598 GRLDRAFQIVSTMV-KNGCQP-NSHIYSALLSGFV-----LSNTAIGARALSSTG---DL 647

Query: 278 TFFKLAFEE----CLTGQNLRGAEFIWGAM----VGRIGFRPDTHMYNMMISLYCYSNET 329
               L+ EE    CL+    R  +          + + G  P   +YN ++   C     
Sbjct: 648 DARSLSSEENDNNCLSSHVFRLMDVDHALKIRDEIKKCGV-PTEDLYNFLVVGLCKEGRI 706

Query: 330 GAAMKLLDEMVYNGAFPDIQTYNIL 354
             A +L  +MV +G FPD    +I+
Sbjct: 707 IEADQLTQDMVKHGLFPDKAISSII 731



 Score = 42.4 bits (98), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 78/189 (41%), Gaps = 9/189 (4%)

Query: 282 LAFEECLTGQNLRGAEFIWGAMVG--RIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEM 339
           L  +EC   +N  G   + GA+ G   +GFR     Y+ ++      N    A  +   M
Sbjct: 62  LLIQECEDSEN--GVVKLMGALDGMTELGFRLSYPCYSTLLMCLAKLNMGFVAFLVYRRM 119

Query: 340 VYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDP 399
           V  G       Y  +   L K   +  A     ++++    L+   C + V      DD 
Sbjct: 120 VNEGFVLGGIDYRTVVNALCKNGFVQAAEMFCCKVLRLGFGLDTHVCTSLVLANCRRDDL 179

Query: 400 YVAIK-FWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSK 458
             A + F K   E  C   S T ++L+ GLC+   L EA +  + M EKG Q +    ++
Sbjct: 180 GEAFRVFEKMSKEESCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPS----TR 235

Query: 459 LKQILIKAR 467
              +LIKA+
Sbjct: 236 TYTVLIKAK 244


>gi|356532718|ref|XP_003534918.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 529

 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 144/344 (41%), Gaps = 42/344 (12%)

Query: 136 ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRV 195
            ++ ++ +        + A+    ++E    + +V   N+++  +C+D    +A+     
Sbjct: 116 VSYGTLLNGLCKIGETRCAVKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSE 175

Query: 196 VDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG 254
           +D R I PD  TY  L+ G+     +  A     EM+++   +P  V  Y+  +  L K 
Sbjct: 176 MDARGIFPDAITYTTLIYGFCLLGQLMGAFSLLDEMILK-NINP-GVYIYNILINALCKE 233

Query: 255 CDGIYETVNSLKRMMERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDT 313
              + E  N L  M + G  PG+ T+  L    CL G+ ++ A+ I+ AMV ++G  P+ 
Sbjct: 234 -GNVKEAKNLLAVMTKEGIKPGVVTYSTLMDGYCLVGE-VQNAKQIFHAMV-QMGVNPNV 290

Query: 314 HMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNE 373
           + YN+MI+  C       AM LL EM++    PD  TYN L + L K  ++  A  L NE
Sbjct: 291 YSYNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSALNLMNE 350

Query: 374 MVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHM 433
           M       +H    A V  Y                              L+  LC    
Sbjct: 351 M-------HHRGQPADVVTYTS----------------------------LLDALCKNQN 375

Query: 434 LPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLK 477
           L +A      M E+GIQ T +  + L   L K  +    +EL +
Sbjct: 376 LDKATALFMKMKERGIQPTMYTYTALIDGLCKGGRLKNAQELFQ 419



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 66/276 (23%), Positives = 124/276 (44%), Gaps = 6/276 (2%)

Query: 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDV 160
           Y +N++++ L K        + +  M KE +   + T++++   Y +   V++A   F  
Sbjct: 221 YIYNILINALCKEGNVKEAKNLLAVMTKEGIKPGVVTYSTLMDGYCLVGEVQNAKQIFHA 280

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYAILLEGWEKERD 219
           M Q G   +V++ N +++ +C+  +  +A   LR ++   + PD  TY  L++G  K   
Sbjct: 281 MVQMGVNPNVYSYNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGR 340

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTF 279
           + +A     EM       P +V  Y S L  L K    + +      +M ERG  P M  
Sbjct: 341 ITSALNLMNEM--HHRGQPADVVTYTSLLDALCKN-QNLDKATALFMKMKERGIQPTMYT 397

Query: 280 FKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEM 339
           +    +    G  L+ A+ ++  ++ + G   D   Y +MIS  C       A+ +  +M
Sbjct: 398 YTALIDGLCKGGRLKNAQELFQHLLVK-GCCIDVWTYTVMISGLCKEGMFDEALAIKSKM 456

Query: 340 VYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
             NG  P+  T+ I+   L +  +  +A  L +EM+
Sbjct: 457 EDNGCIPNAVTFEIIIRSLFEKDENDKAEKLLHEMI 492


>gi|449463386|ref|XP_004149415.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 830

 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 95/370 (25%), Positives = 172/370 (46%), Gaps = 23/370 (6%)

Query: 88  FRWSAYQLNDKHSPYAWNLVVDLLG--KNCLFDAMWDAIKSMKKENV-LSLATFASVFSS 144
           FR+ AY       P A+     +LG  +N   D  +     M K+    +  T++++ + 
Sbjct: 229 FRYDAY-------PNAFTYTSLILGHCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLING 281

Query: 145 YVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPD 203
                R+++A+   + M Q G +  V+     L ++C  G + +A + L  +  R   P+
Sbjct: 282 LCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPN 341

Query: 204 NDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVN 263
             T+  L+ G  ++     A   + +M+ + G  P  V  Y++ +  L    +G +ET  
Sbjct: 342 IQTFTALISGLSRDGKFEIAIGLYHKMLAD-GLVPTTV-TYNALINQLC--VEGRFETAF 397

Query: 264 SL-KRMMERGCNPG-MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMIS 321
           ++ K M+  G  P   T+ ++    CL G +++ A  I+  M+ + G  P+   YN +I 
Sbjct: 398 TIFKWMLSHGSLPSTQTYNEIIKCFCLMG-DIQKAMVIFDKML-KAGSSPNVITYNTLIY 455

Query: 322 LYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVL 381
            YC       AM+LL+ M  NG  PD  TY  L     +G KL  A+ LF  M+++    
Sbjct: 456 GYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISP 515

Query: 382 NHENCRAAVRVYMD--SDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVK 439
           NH    A +  Y +    D  +A+ FWK M+E+     S+T N++++G    + + EA  
Sbjct: 516 NHVTYTAIIDGYFNLAKVDDALAL-FWK-MVESGNLPSSQTYNVMISGFSKTNSISEAEN 573

Query: 440 YAKGMAEKGI 449
           +   M ++G+
Sbjct: 574 FCGKMVKQGL 583



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 80/353 (22%), Positives = 141/353 (39%), Gaps = 45/353 (12%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVM 161
            +N +++ L     F+  +   K M     L S  T+  +   + +   ++ A+  FD M
Sbjct: 379 TYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKM 438

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDV 220
            + G   +V   N+L+   C+ G   +A + L ++ G  +KPD  TY  L+ G+ +   +
Sbjct: 439 LKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKL 498

Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFF 280
            +A   F  M +E G  P++V  Y + +       DG                     +F
Sbjct: 499 EHATSLFYGM-MEHGISPNHV-TYTAII-------DG---------------------YF 528

Query: 281 KLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMV 340
            LA         +  A  ++  MV   G  P +  YN+MIS +  +N    A     +MV
Sbjct: 529 NLA--------KVDDALALFWKMV-ESGNLPSSQTYNVMISGFSKTNSISEAENFCGKMV 579

Query: 341 YNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNE---NVLNHENCRAAVRVYMDSD 397
             G  P++ TY    + L +  +   A  +F+EM K     N+  + +    +     ++
Sbjct: 580 KQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAE 639

Query: 398 DPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQ 450
           D  +       +    C    +T   LV GLC      EA +    M +KG+Q
Sbjct: 640 DAEM-YNLLARLTHYGCEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQKKGLQ 691



 Score = 45.8 bits (107), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 66/285 (23%), Positives = 119/285 (41%), Gaps = 24/285 (8%)

Query: 118 DAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLL 177
           DA+    K ++  N+ S  T+  + S +   + + +A      M + G   +V    S +
Sbjct: 535 DALALFWKMVESGNLPSSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFI 594

Query: 178 SAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVANAKK-TFGEMVIEVG 235
             +CR+G+T  A++    ++ R   P+  TY+ L+ G  +E    +A+       +   G
Sbjct: 595 DGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDAEMYNLLARLTHYG 654

Query: 236 WDPDNVPAYDSYLITLLKGCDG---IYETVNSLKRMMERGCNPGMTFFK-LAFEECLTGQ 291
            +P NV  Y     TL+KG  G    YE    +  M ++G  P    ++ L   EC   +
Sbjct: 655 CEP-NVDTYT----TLVKGLCGEGRCYEADQLVVSMQKKGLQPSEEIYRALLIGEC---K 706

Query: 292 NLR--GAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQ 349
           NL+   A  I+ +M   +GF+     Y  +I   C  N    A  +   M+      D  
Sbjct: 707 NLKVESALNIFYSM-DTLGFQLHLSDYKALICALCKENFIEEAQCIFQTMLEKHWNSDEV 765

Query: 350 TYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYM 394
            + +L + L+K        G  +  +K  +V+   NC    + Y+
Sbjct: 766 VWTVLLDGLLK-------EGETDLCLKLLHVMESRNCTLNFQTYV 803



 Score = 43.5 bits (101), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 66/143 (46%)

Query: 338 EMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSD 397
           +M+ +G  P + T+N +   L K  ++ EA  + + + + +   N     + +  +  + 
Sbjct: 192 KMLNSGIRPSLLTFNTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTSLILGHCRNH 251

Query: 398 DPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALS 457
           +  +A   +  M+++ C   S T + L+ GLC    L EA+   + M +KGI+ T +  +
Sbjct: 252 NLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYT 311

Query: 458 KLKQILIKARKEAVYEELLKKCK 480
                L  A   +   ELL K K
Sbjct: 312 IPLVSLCDAGCSSEAVELLGKMK 334


>gi|302818229|ref|XP_002990788.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
 gi|300141349|gb|EFJ08061.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
          Length = 624

 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 81/313 (25%), Positives = 135/313 (43%), Gaps = 8/313 (2%)

Query: 136 ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-R 194
           A + ++ S Y  A     A      M +  C   V    +++  +C+ G+T DA + L  
Sbjct: 46  AIYNALISGYSKAKDFGQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAGRTKDAVKLLDE 105

Query: 195 VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG 254
           + D    P+  TY +++EG  +ER +  AKK   EM +  G+ PD V  Y+S++  L K 
Sbjct: 106 MRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVR-GYFPD-VVTYNSFIKGLCK- 162

Query: 255 CDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTH 314
           CD + E    L RM      P +  +           +L  A  +   M  R G  PD  
Sbjct: 163 CDRVDEARKFLARM---PVTPDVVSYTTVINGLCKSGDLDSASRMLDQMTNR-GCTPDVV 218

Query: 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
            Y+ +I  +C   E   AM LLD M+  G  P++  YN L   L +   + +A  +  EM
Sbjct: 219 TYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEM 278

Query: 375 VKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHML 434
            +     +  +  A +     ++    A   +  M+E  C+  + + ++LV  LC    L
Sbjct: 279 ERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLVEELCKKKEL 338

Query: 435 PEAVKYAKGMAEK 447
            +A+   +   EK
Sbjct: 339 DDAITLVEQAREK 351



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/262 (25%), Positives = 117/262 (44%), Gaps = 9/262 (3%)

Query: 117 FDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNS 175
           F   +  +  M K + L ++ T+ ++      A R KDA+   D M   GC  +++  N 
Sbjct: 61  FGQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAGRTKDAVKLLDEMRDKGCSPNIYTYNV 120

Query: 176 LLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEV 234
           ++  +C + K  +A + L  +  R   PD  TY   ++G  K   V  A+K    M +  
Sbjct: 121 IVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARMPVT- 179

Query: 235 GWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLR 294
              PD V +Y + +  L K  D +      L +M  RGC P +  +    +    G  + 
Sbjct: 180 ---PD-VVSYTTVINGLCKSGD-LDSASRMLDQMTNRGCTPDVVTYSSLIDGFCKGGEVE 234

Query: 295 GAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNIL 354
            A  +  +M+ ++G RP+   YN ++         G A  +L EM   G  PD+ +YN  
Sbjct: 235 RAMGLLDSML-KLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNAC 293

Query: 355 FEFLVKGRKLWEASGLFNEMVK 376
            + L K  ++ +A  +F+ MV+
Sbjct: 294 IDGLCKAERVKKAKAVFDRMVE 315



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 64/249 (25%), Positives = 101/249 (40%), Gaps = 47/249 (18%)

Query: 166 CKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIK-----PDNDTYAILLEGWEKERDV 220
           C+ D F    LL  +CR  +   A Q L    GR+K     PD+  Y  L+ G+ K +D 
Sbjct: 6   CQPDAFTFAILLRGLCRSNQLEKARQLL----GRMKEMGCVPDDAIYNALISGYSKAKDF 61

Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSY--LITLLKGCDGIYETVNSLKRMMERGCNPGMT 278
             A K   EMV         +P   +Y  ++  L       + V  L  M ++GC+P + 
Sbjct: 62  GQAFKFLAEMV-----KNHCLPTVVTYTNIVDGLCKAGRTKDAVKLLDEMRDKGCSPNIY 116

Query: 279 FFKLAFEECLTGQNLRGAE--------------------FIWG-----------AMVGRI 307
            + +  E     + L  A+                    FI G             + R+
Sbjct: 117 TYNVIVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARM 176

Query: 308 GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEA 367
              PD   Y  +I+  C S +  +A ++LD+M   G  PD+ TY+ L +   KG ++  A
Sbjct: 177 PVTPDVVSYTTVINGLCKSGDLDSASRMLDQMTNRGCTPDVVTYSSLIDGFCKGGEVERA 236

Query: 368 SGLFNEMVK 376
            GL + M+K
Sbjct: 237 MGLLDSMLK 245



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 110/241 (45%), Gaps = 5/241 (2%)

Query: 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR 194
           + ++ +       A+RVK A   FD M + GC  +  + + L+  +C+  +  DA   + 
Sbjct: 287 VVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLVEELCKKKELDDAITLVE 346

Query: 195 VVDGRIK-PDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLK 253
               + +  D   Y +LL+G  K      A   F +++ E   +PD V  Y+  L +  K
Sbjct: 347 QAREKYQIVDILLYTVLLDGLCKGGRFDEACALFSKVLDEKICEPD-VFFYNVMLDSHCK 405

Query: 254 GCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDT 313
               I + +   K+M+ER C   +T+  L    C+  + L  AE +   MV   GF PD 
Sbjct: 406 R-RQIDKALQIHKQMLERNCCNVVTWNILVHGLCVDDR-LSDAETMLLTMVDE-GFIPDF 462

Query: 314 HMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNE 373
             Y  ++   C   ++ AA++L +E V  G  PD+ TY+ L   LV      EA  LF +
Sbjct: 463 VTYGTLVDAMCKCGKSAAALELFEEAVKGGCVPDVVTYSALITGLVHENMAEEAYLLFTK 522

Query: 374 M 374
           +
Sbjct: 523 L 523



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 65/266 (24%), Positives = 113/266 (42%), Gaps = 9/266 (3%)

Query: 195 VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG 254
           ++D   +PD  T+AILL G  +   +  A++  G M  E+G  PD+  A  + LI+    
Sbjct: 1   MIDKSCQPDAFTFAILLRGLCRSNQLEKARQLLGRMK-EMGCVPDD--AIYNALISGYSK 57

Query: 255 CDGIYETVNSLKRMMERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDT 313
                +    L  M++  C P + T+  +    C  G+  + A  +   M  + G  P+ 
Sbjct: 58  AKDFGQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAGRT-KDAVKLLDEMRDK-GCSPNI 115

Query: 314 HMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNE 373
           + YN+++   C   +   A K+L+EM   G FPD+ TYN   + L K  ++ EA      
Sbjct: 116 YTYNVIVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLAR 175

Query: 374 MVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHM 433
           M    +V+++      +     S D   A +    M    C+    T + L+ G C    
Sbjct: 176 MPVTPDVVSYTT---VINGLCKSGDLDSASRMLDQMTNRGCTPDVVTYSSLIDGFCKGGE 232

Query: 434 LPEAVKYAKGMAEKGIQVTPFALSKL 459
           +  A+     M + G +    A + L
Sbjct: 233 VERAMGLLDSMLKLGCRPNMVAYNSL 258



 Score = 47.0 bits (110), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 55/130 (42%)

Query: 339 MVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDD 398
           M+     PD  T+ IL   L +  +L +A  L   M +   V +     A +  Y  + D
Sbjct: 1   MIDKSCQPDAFTFAILLRGLCRSNQLEKARQLLGRMKEMGCVPDDAIYNALISGYSKAKD 60

Query: 399 PYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSK 458
              A KF   M++NHC     T   +V GLC      +AVK    M +KG     +  + 
Sbjct: 61  FGQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAGRTKDAVKLLDEMRDKGCSPNIYTYNV 120

Query: 459 LKQILIKARK 468
           + + L + RK
Sbjct: 121 IVEGLCEERK 130



 Score = 46.2 bits (108), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 62/275 (22%), Positives = 99/275 (36%), Gaps = 48/275 (17%)

Query: 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVM 161
           + +N+++D   K    D      K M + N  ++ T+  +     V DR+ DA T    M
Sbjct: 394 FFYNVMLDSHCKRRQIDKALQIHKQMLERNCCNVVTWNILVHGLCVDDRLSDAETMLLTM 453

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDV 220
              G   D     +L+ A+C+ GK+  A + F   V G   PD  TY+ L+ G   E   
Sbjct: 454 VDEGFIPDFVTYGTLVDAMCKCGKSAAALELFEEAVKGGCVPDVVTYSALITGLVHENMA 513

Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFF 280
             A   F ++         +V  +++ ++   +   G                + G+  F
Sbjct: 514 EEAYLLFTKL---------DVALWNAMILGYAENGSG----------------DLGLKLF 548

Query: 281 KLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNET-GAAMKLLDEM 339
                           E I   +       P+   +   IS      E+ G A  L D  
Sbjct: 549 ---------------VELIESDV------EPNARTFGKEISGKLVKAESLGKARGLFDRA 587

Query: 340 VYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
           V  G FPD+   N L +   K   L EA  +F  M
Sbjct: 588 VKGGFFPDLFVANTLIDVFAKCGDLEEARRIFYSM 622


>gi|255560884|ref|XP_002521455.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539354|gb|EEF40945.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 623

 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 70/328 (21%), Positives = 140/328 (42%), Gaps = 6/328 (1%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVM 161
            +N ++    +    D  +   + M + NVL  L ++ ++ +      +V++A   F  M
Sbjct: 286 TYNTLISCYCRKGRLDDAFYLYRIMYRRNVLPDLVSYTALMNGLCKEGKVREAHQLFHRM 345

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDV 220
              G   D+ + N+L+   C++GK  ++   L  + G  I PD  T  +L+EG+ KE  +
Sbjct: 346 IHRGLNPDIVSFNTLICGYCKEGKMRESRSLLHEMIGSGICPDKVTCQVLIEGYRKEARI 405

Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFF 280
            +A     E+  E    P +   YD  ++++ +     +   + L+R+ +RG  PG+  +
Sbjct: 406 VSALNLVVEL--ERFGVPISTDIYDYLMVSICEE-GRPFAAKSLLQRISQRGYVPGVEIY 462

Query: 281 KLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMV 340
               E      ++  A  +   M G    +P    Y  +I   C ++ +  A  L++EM+
Sbjct: 463 NKLIESLCKSDSIADALLVKSEM-GHRNIKPSAITYKALICCLCRTSRSMEAESLMEEML 521

Query: 341 YNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPY 400
            +G  PD      L     K R + +A  L     K   + + E+    V+ Y +  D  
Sbjct: 522 QSGMLPDPDICRALMHVYCKERDIGKAETLLQTFAKEFQIFDSESYNTLVKTYCEDADAT 581

Query: 401 VAIKFWKYMIENHCSDLSETGNLLVAGL 428
             ++    M++   +   +T   ++ GL
Sbjct: 582 RLMELQDRMLKVGFAPNIQTFRQMIHGL 609



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 78/334 (23%), Positives = 149/334 (44%), Gaps = 12/334 (3%)

Query: 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDV 160
           Y +N++  +  ++   D + D ++ M++E     + T+ ++ S Y    R+ DA   + +
Sbjct: 250 YTFNILTHVFCQDGDVDKVNDFLERMEEEGFEPDIVTYNTLISCYCRKGRLDDAFYLYRI 309

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERD 219
           M +     D+ +  +L++ +C++GK  +A Q F R++   + PD  ++  L+ G+ KE  
Sbjct: 310 MYRRNVLPDLVSYTALMNGLCKEGKVREAHQLFHRMIHRGLNPDIVSFNTLICGYCKEGK 369

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTF 279
           +  ++    EM I  G  PD V         L++G       V++L  ++E     G+  
Sbjct: 370 MRESRSLLHEM-IGSGICPDKVTCQ-----VLIEGYRKEARIVSALNLVVELE-RFGVPI 422

Query: 280 FKLAFEECLTGQNLRGAEFIWGAMVGRI---GFRPDTHMYNMMISLYCYSNETGAAMKLL 336
               ++  +      G  F   +++ RI   G+ P   +YN +I   C S+    A+ + 
Sbjct: 423 STDIYDYLMVSICEEGRPFAAKSLLQRISQRGYVPGVEIYNKLIESLCKSDSIADALLVK 482

Query: 337 DEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDS 396
            EM +    P   TY  L   L +  +  EA  L  EM+++  + + + CRA + VY   
Sbjct: 483 SEMGHRNIKPSAITYKALICCLCRTSRSMEAESLMEEMLQSGMLPDPDICRALMHVYCKE 542

Query: 397 DDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCD 430
            D   A    +   +      SE+ N LV   C+
Sbjct: 543 RDIGKAETLLQTFAKEFQIFDSESYNTLVKTYCE 576



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 81/369 (21%), Positives = 149/369 (40%), Gaps = 23/369 (6%)

Query: 115 CLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALN 174
           C  D  WD +             F  +  +YV    +K+  TTF  + + GC   V + N
Sbjct: 171 CCQDCNWDPV------------IFDMLVKAYVREGMIKEGFTTFRKIVEVGCVPSVISCN 218

Query: 175 SLLSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIE 233
            LL+ + +  +    WQ  + +    I P++ T+ IL   + ++ DV      F E + E
Sbjct: 219 CLLNGLLKLNRIDQCWQVYKEMARVGIHPNSYTFNILTHVFCQDGDVDKVND-FLERMEE 277

Query: 234 VGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMM-ERGCNPGMTFFKLAFEECLTGQN 292
            G++PD V  Y++ +    +   G  +    L R+M  R   P +  +            
Sbjct: 278 EGFEPDIV-TYNTLISCYCR--KGRLDDAFYLYRIMYRRNVLPDLVSYTALMNGLCKEGK 334

Query: 293 LRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYN 352
           +R A  ++  M+ R G  PD   +N +I  YC   +   +  LL EM+ +G  PD  T  
Sbjct: 335 VREAHQLFHRMIHR-GLNPDIVSFNTLICGYCKEGKMRESRSLLHEMIGSGICPDKVTCQ 393

Query: 353 ILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIEN 412
           +L E   K  ++  A  L  E+ +    ++ +     +    +   P+ A    + + + 
Sbjct: 394 VLIEGYRKEARIVSALNLVVELERFGVPISTDIYDYLMVSICEEGRPFAAKSLLQRISQR 453

Query: 413 HCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARK---- 468
                 E  N L+  LC    + +A+     M  + I+ +      L   L +  +    
Sbjct: 454 GYVPGVEIYNKLIESLCKSDSIADALLVKSEMGHRNIKPSAITYKALICCLCRTSRSMEA 513

Query: 469 EAVYEELLK 477
           E++ EE+L+
Sbjct: 514 ESLMEEMLQ 522


>gi|224134148|ref|XP_002321748.1| predicted protein [Populus trichocarpa]
 gi|222868744|gb|EEF05875.1| predicted protein [Populus trichocarpa]
          Length = 1041

 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 91/376 (24%), Positives = 163/376 (43%), Gaps = 9/376 (2%)

Query: 106 LVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVMEQY 164
           L+ DLL  N L +  W     M + NVL  + T+  + +++  A   K+       ME+ 
Sbjct: 207 LLSDLLKANKL-ELFWRFYNGMLEANVLHDVYTYTHLINAHFRAGNAKEGKRLLFEMEEK 265

Query: 165 GCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVANA 223
           GC   +   N ++  +CR G+  +A++  +++D + +  D  TY+IL++G+ K++    A
Sbjct: 266 GCSPSLVTYNVVIGGLCRAGEVDEAFELKKLMDKKGLVADVFTYSILIDGFGKQKRCTEA 325

Query: 224 KKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGM-TFFKL 282
           K    EM  + G  P +V AY + +   ++  D   E     + M+ RG    + T+  L
Sbjct: 326 KLMLEEMFSK-GLKPGHV-AYTALIDGFMRQGDS-GEAFRVKEEMLARGVKLNLFTYNAL 382

Query: 283 AFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYN 342
               C  G ++  A+ +   M+  +G +PDT  YN MI  Y     T     LL EM  +
Sbjct: 383 VKGVCKFG-DMEKADALLNEMI-MVGIKPDTQTYNNMIEGYLKEQNTSRVKDLLSEMKKS 440

Query: 343 GAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVA 402
              P   T  ++   L +   + +AS +F  MV      N       ++ ++       A
Sbjct: 441 NLVPTAYTCGMIINGLCRHGSIEDASRVFEIMVSLGVKPNAVIYTTLIKGHVQEGRFQEA 500

Query: 403 IKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQI 462
           ++  K M +          N ++ GLC    + EA  Y   M E+G++   +    L   
Sbjct: 501 VRILKVMDKKGVQPDVLCYNSVIIGLCKSRKMEEAKDYLVEMIERGLKPNVYTYGALIHG 560

Query: 463 LIKARKEAVYEELLKK 478
             K+ +  V +   K+
Sbjct: 561 YCKSGEMQVADRYFKE 576



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 110/236 (46%), Gaps = 5/236 (2%)

Query: 138 FASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVV 196
           + ++   +V   R ++A+    VM++ G + DV   NS++  +C+  K  +A  +L  ++
Sbjct: 484 YTTLIKGHVQEGRFQEAVRILKVMDKKGVQPDVLCYNSVIIGLCKSRKMEEAKDYLVEMI 543

Query: 197 DGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD 256
           +  +KP+  TY  L+ G+ K  ++  A + F EM +  G  P++V    + LI       
Sbjct: 544 ERGLKPNVYTYGALIHGYCKSGEMQVADRYFKEM-LGCGIAPNDVVC--TALIDGYCKEG 600

Query: 257 GIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMY 316
              E  +  + M+ R  +P +  +       L    L+GA  +    + + G  PD   Y
Sbjct: 601 STTEATSIFRCMLGRSVHPDVRTYSALIHGLLRNGKLQGAMELLSEFLEK-GLVPDVFTY 659

Query: 317 NMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFN 372
           N +IS +C     G A +L + M   G  P+I TYN L   L K  ++  A  LF+
Sbjct: 660 NSIISGFCKQGGIGKAFQLHEYMCQKGISPNIITYNALINGLCKAGEIERARELFD 715



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 88/359 (24%), Positives = 147/359 (40%), Gaps = 13/359 (3%)

Query: 122 DAIKSMKKENVLSLA-TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAI 180
           D +  MKK N++  A T   + +       ++DA   F++M   G K +     +L+   
Sbjct: 432 DLLSEMKKSNLVPTAYTCGMIINGLCRHGSIEDASRVFEIMVSLGVKPNAVIYTTLIKGH 491

Query: 181 CRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPD 239
            ++G+  +A + L+V+D + ++PD   Y  ++ G  K R +  AK    EM IE G  P 
Sbjct: 492 VQEGRFQEAVRILKVMDKKGVQPDVLCYNSVIIGLCKSRKMEEAKDYLVEM-IERGLKP- 549

Query: 240 NVPAYDSYLITLLKGCDGIYETVNS-LKRMMERGCNPG-MTFFKLAFEECLTGQNLRGAE 297
           NV  Y + +    K   G  +  +   K M+  G  P  +    L    C  G     A 
Sbjct: 550 NVYTYGALIHGYCK--SGEMQVADRYFKEMLGCGIAPNDVVCTALIDGYCKEGSTTE-AT 606

Query: 298 FIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEF 357
            I+  M+GR    PD   Y+ +I     + +   AM+LL E +  G  PD+ TYN +   
Sbjct: 607 SIFRCMLGR-SVHPDVRTYSALIHGLLRNGKLQGAMELLSEFLEKGLVPDVFTYNSIISG 665

Query: 358 LVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDL 417
             K   + +A  L   M +     N     A +     + +   A + +  +     +  
Sbjct: 666 FCKQGGIGKAFQLHEYMCQKGISPNIITYNALINGLCKAGEIERARELFDGIPGKGLAHN 725

Query: 418 SETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELL 476
           + T   ++ G C    L +A +    M  KG+    F  S L   +   RKE   E+ L
Sbjct: 726 AVTYATIIDGYCKSGNLSKAFRLFDEMTLKGVPPDSFVYSAL---IDGCRKEGNTEKAL 781



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 77/306 (25%), Positives = 121/306 (39%), Gaps = 12/306 (3%)

Query: 150 RVKDAITTFDVMEQY---GCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDND 205
           R  D+   F V E+    G K ++F  N+L+  +C+ G    A   L  ++   IKPD  
Sbjct: 353 RQGDSGEAFRVKEEMLARGVKLNLFTYNALVKGVCKFGDMEKADALLNEMIMVGIKPDTQ 412

Query: 206 TYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVP-AYD-SYLITLLKGCDGIYETVN 263
           TY  ++EG+ KE++ +  K    EM        + VP AY    +I  L     I +   
Sbjct: 413 TYNNMIEGYLKEQNTSRVKDLLSEM-----KKSNLVPTAYTCGMIINGLCRHGSIEDASR 467

Query: 264 SLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLY 323
             + M+  G  P    +    +  +     + A  I   M  + G +PD   YN +I   
Sbjct: 468 VFEIMVSLGVKPNAVIYTTLIKGHVQEGRFQEAVRILKVM-DKKGVQPDVLCYNSVIIGL 526

Query: 324 CYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNH 383
           C S +   A   L EM+  G  P++ TY  L     K  ++  A   F EM+      N 
Sbjct: 527 CKSRKMEEAKDYLVEMIERGLKPNVYTYGALIHGYCKSGEMQVADRYFKEMLGCGIAPND 586

Query: 384 ENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKG 443
             C A +  Y        A   ++ M+         T + L+ GL     L  A++    
Sbjct: 587 VVCTALIDGYCKEGSTTEATSIFRCMLGRSVHPDVRTYSALIHGLLRNGKLQGAMELLSE 646

Query: 444 MAEKGI 449
             EKG+
Sbjct: 647 FLEKGL 652



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 78/368 (21%), Positives = 157/368 (42%), Gaps = 14/368 (3%)

Query: 106 LVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYG 165
           L+  LL    L  AM    + ++K  V  + T+ S+ S +     +  A    + M Q G
Sbjct: 627 LIHGLLRNGKLQGAMELLSEFLEKGLVPDVFTYNSIISGFCKQGGIGKAFQLHEYMCQKG 686

Query: 166 CKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDND-TYAILLEGWEKERDVANAK 224
              ++   N+L++ +C+ G+   A +    + G+    N  TYA +++G+ K  +++ A 
Sbjct: 687 ISPNIITYNALINGLCKAGEIERARELFDGIPGKGLAHNAVTYATIIDGYCKSGNLSKAF 746

Query: 225 KTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMME---RGCNPGMTFFK 281
           + F EM ++ G  PD+   Y +    L+ GC     T  +L   +E   +G     +   
Sbjct: 747 RLFDEMTLK-GVPPDSF-VYSA----LIDGCRKEGNTEKALSLFLESVQKGFASTSSLNA 800

Query: 282 LAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVY 341
           L    C +G+ +   + +   +   +  +PD   Y ++I  +C +     A +   +M  
Sbjct: 801 LMDGFCKSGKVIEANQLLEDMVDKHV--KPDHVTYTILIDYHCKTGFLKEAEQFFVDMQK 858

Query: 342 NGAFPDIQTYNILFE-FLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPY 400
               P+  TY  L   + + GR+  E   LF+EM+  +   +       +  ++   D  
Sbjct: 859 RNLMPNALTYTALLSGYNMAGRR-SEMFALFDEMIAKDIEPDGVTWSVMIDAHLKEGDHV 917

Query: 401 VAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLK 460
             +K    M++   +      ++L+  LC    + E +K  + + E+G+ ++    S L 
Sbjct: 918 KTLKLVDDMLKKGGNVSKNVCHVLIDPLCRKEHVSEVLKVLEKIEEQGLNLSLATCSTLV 977

Query: 461 QILIKARK 468
           +   KA K
Sbjct: 978 RCFHKAGK 985



 Score = 46.6 bits (109), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 59/281 (20%), Positives = 110/281 (39%), Gaps = 18/281 (6%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRV 195
           T+A++   Y  +  +  A   FD M   G   D F  ++L+    ++G T  A   FL  
Sbjct: 728 TYATIIDGYCKSGNLSKAFRLFDEMTLKGVPPDSFVYSALIDGCRKEGNTEKALSLFLES 787

Query: 196 VDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
           V       +   A L++G+ K   V  A +   +MV     D    P + +Y I +   C
Sbjct: 788 VQKGFASTSSLNA-LMDGFCKSGKVIEANQLLEDMV-----DKHVKPDHVTYTILIDYHC 841

Query: 256 DGIY--ETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAE----FIWGAMVGRIGF 309
              +  E       M +R   P      L +   L+G N+ G       ++  M+ +   
Sbjct: 842 KTGFLKEAEQFFVDMQKRNLMPN----ALTYTALLSGYNMAGRRSEMFALFDEMIAK-DI 896

Query: 310 RPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASG 369
            PD   +++MI  +    +    +KL+D+M+  G        ++L + L +   + E   
Sbjct: 897 EPDGVTWSVMIDAHLKEGDHVKTLKLVDDMLKKGGNVSKNVCHVLIDPLCRKEHVSEVLK 956

Query: 370 LFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMI 410
           +  ++ +    L+   C   VR +  +     A +  K M+
Sbjct: 957 VLEKIEEQGLNLSLATCSTLVRCFHKAGKMDGAARVLKSMV 997



 Score = 42.7 bits (99), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 41/173 (23%), Positives = 69/173 (39%)

Query: 308 GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEA 367
           G  P    YN++I   C + E   A +L   M   G   D+ TY+IL +   K ++  EA
Sbjct: 266 GCSPSLVTYNVVIGGLCRAGEVDEAFELKKLMDKKGLVADVFTYSILIDGFGKQKRCTEA 325

Query: 368 SGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAG 427
             +  EM        H    A +  +M   D   A +  + M+         T N LV G
Sbjct: 326 KLMLEEMFSKGLKPGHVAYTALIDGFMRQGDSGEAFRVKEEMLARGVKLNLFTYNALVKG 385

Query: 428 LCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKCK 480
           +C    + +A      M   GI+      + + +  +K +  +  ++LL + K
Sbjct: 386 VCKFGDMEKADALLNEMIMVGIKPDTQTYNNMIEGYLKEQNTSRVKDLLSEMK 438


>gi|224075357|ref|XP_002304600.1| predicted protein [Populus trichocarpa]
 gi|222842032|gb|EEE79579.1| predicted protein [Populus trichocarpa]
          Length = 641

 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 98/411 (23%), Positives = 187/411 (45%), Gaps = 20/411 (4%)

Query: 53  TVEDVLDKTLI--RVSQETVEQVLKFSYSH---PGPAVKFFRWSAYQLNDKHSPYAWNLV 107
           ++E VLD+     RV  E    V+  +Y     P  AV  F   AY+   K +  ++N V
Sbjct: 78  SLEKVLDRMRCEKRVVVEKCFVVIFKAYGKAHLPEKAVGLFDRMAYEFECKRTVKSFNSV 137

Query: 108 VDLLGKNCLFD---AMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVMEQ 163
           ++++ +  LF      ++ +   K  N+  ++ TF  V  +      V DA+  F  M  
Sbjct: 138 LNVIIQEGLFYRALEFYNHVIGAKGVNISPNVLTFNLVIKTMCKVGLVDDAVQMFRDMPV 197

Query: 164 YGCKHDVFALNSLLSAICRDGKTIDAWQFL--RVVDGRIKPDNDTYAILLEGWEKERDVA 221
             C+ DV+   +L+  +C+  +  +A   L    +DG   P   T+ +L+ G  K+ D+A
Sbjct: 198 SKCQPDVYTYCTLMDGLCKADRIDEAVSLLDEMQIDGCF-PSPVTFNVLINGLCKKGDLA 256

Query: 222 NAKKTFGEMVIEVGWDPDNVPAYDSYLITL-LKGCDGIYETVNSLKRMMERGCNPGMTFF 280
              K    M ++ G  P+ V  Y++ +  L LKG   + + ++ L RM+   C P +  +
Sbjct: 257 RVAKLVDNMFLK-GCAPNEV-TYNTLIHGLCLKG--KLEKAISLLDRMVSSKCVPNVVTY 312

Query: 281 KLAFEECL-TGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEM 339
                  +  G+ L GA  +  A++   G+  + ++Y+ +IS      ++  AM+L  EM
Sbjct: 313 GTIINGLVKQGRALDGARVL--ALMEERGYHVNEYVYSALISGLFKEGKSQEAMQLFKEM 370

Query: 340 VYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDP 399
                  +   Y+ + + L +  K  EA  + +EM  N    N     + ++ + ++ + 
Sbjct: 371 TVKECELNTIVYSAVIDGLCRDGKPDEALEVLSEMTNNRCKPNAYTYSSLMKGFFEAGNG 430

Query: 400 YVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQ 450
           + AI+ WK M +++ +      ++L+ GLC    + EA+     M  KG +
Sbjct: 431 HKAIEMWKDMAKHNFTQNEVCYSVLIHGLCKDGKVKEAMMVWAQMLGKGCK 481



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 56/255 (21%), Positives = 117/255 (45%), Gaps = 16/255 (6%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RV 195
            ++++ S      + ++A+  F  M    C+ +    ++++  +CRDGK  +A + L  +
Sbjct: 346 VYSALISGLFKEGKSQEAMQLFKEMTVKECELNTIVYSAVIDGLCRDGKPDEALEVLSEM 405

Query: 196 VDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
            + R KP+  TY+ L++G+ +  +   A + + +M  +  +  + V  Y   +  L K  
Sbjct: 406 TNNRCKPNAYTYSSLMKGFFEAGNGHKAIEMWKDMA-KHNFTQNEV-CYSVLIHGLCK-- 461

Query: 256 DG-IYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGR-IGFRPDT 313
           DG + E +    +M+ +GC P +  +            +  A  ++  M+ +    +PD 
Sbjct: 462 DGKVKEAMMVWAQMLGKGCKPDVVAYGSMINGLSNAGLVEDALQLYNEMLCQEPDSQPDV 521

Query: 314 HMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVK-------GRKLWE 366
             YN++++  C  +    A+ LL+ M+  G  PD+ T  I    L +       GR+  +
Sbjct: 522 VTYNILLNALCKQSSISRAIDLLNSMLDRGCDPDLVTCIIFLRTLREKLDPPQDGREFLD 581

Query: 367 ASGLFNEMVKNENVL 381
             GL   ++K + VL
Sbjct: 582 --GLVVRLLKRQRVL 594


>gi|226493231|ref|NP_001140656.1| hypothetical protein [Zea mays]
 gi|194700420|gb|ACF84294.1| unknown [Zea mays]
 gi|414587025|tpg|DAA37596.1| TPA: hypothetical protein ZEAMMB73_567962 [Zea mays]
          Length = 598

 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 85/335 (25%), Positives = 149/335 (44%), Gaps = 21/335 (6%)

Query: 150 RVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDG---KTIDAWQFLRVVDGRIKPDNDT 206
           RV DA+   D M   GC  DV   N LL A C+     + ++   F+R  +G  +P+N T
Sbjct: 178 RVADALVVLDGMLCRGCAPDVVTYNILLQAACKGRGYRQALELIDFMRA-EG-CEPNNVT 235

Query: 207 YAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNS-- 264
           Y ++++   +E DV  A++    +    G  P+ V  Y+    T+LKG   I   V++  
Sbjct: 236 YNVIIDAMCREGDVDQARELLNSLPSR-GCKPNTV-NYN----TVLKGFCSIERWVDADE 289

Query: 265 -LKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLY 323
            L  M+   C P      +     L  + L     ++   + + G   +   YN +IS  
Sbjct: 290 ILDEMVRENCPPNEATLNVIINT-LCRKGLLQKVTLYLEKMSKHGCTANVVTYNAVISGM 348

Query: 324 CYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNH 383
           C      +A++LL  M   G  PDI TYN + + L    +  +A  L  +M +N+ + ++
Sbjct: 349 CEQGNVDSALELLSNMQSFGCKPDIVTYNTVLKGLCSADRWEDAEELMIKMSQNDRLPDN 408

Query: 384 ENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKG 443
                 +  +        A + +K M E  C+  S T + ++ GL     + +A++    
Sbjct: 409 STFNTIISFWCQKGLILQAFEVFKQMPEKGCNPNSTTYSTIIGGLTKAGKMEQALELLNE 468

Query: 444 MAEKGIQVTPFALSKLKQILIKA-RKEAVYEELLK 477
           MA KG     F   K+ ++L ++  KE   EE+++
Sbjct: 469 MANKG-----FNTDKMYRVLTESLNKEDKIEEVVQ 498



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 74/300 (24%), Positives = 137/300 (45%), Gaps = 23/300 (7%)

Query: 105 NLVVDLLGKNCLFDAMWDAIKSMKKENVLS-LATFASVFSSYVVADRVKDAITTFDVMEQ 163
           N++++ L +  L   +   ++ M K    + + T+ +V S       V  A+     M+ 
Sbjct: 307 NVIINTLCRKGLLQKVTLYLEKMSKHGCTANVVTYNAVISGMCEQGNVDSALELLSNMQS 366

Query: 164 YGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERDVAN 222
           +GCK D+   N++L  +C   +  DA + + ++      PDN T+  ++  W ++  +  
Sbjct: 367 FGCKPDIVTYNTVLKGLCSADRWEDAEELMIKMSQNDRLPDNSTFNTIISFWCQKGLILQ 426

Query: 223 AKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKL 282
           A + F +M  E G +P N   Y + +  L K    + + +  L  M  +G N    +  L
Sbjct: 427 AFEVFKQMP-EKGCNP-NSTTYSTIIGGLTKA-GKMEQALELLNEMANKGFNTDKMYRVL 483

Query: 283 AFEECLTGQNLRGAEFIWGAMVGRI---GFRPDTHMYNMMISLYCYSNETGAAMKLLDEM 339
              E L  ++ +  E +   +V ++   G  P T +YN ++   C + +T  A+ +L +M
Sbjct: 484 T--ESLNKED-KIEEVVQ--VVHKLQDSGISPQTVLYNTVLLGLCRNGKTDYAIDVLADM 538

Query: 340 VYNGAFPDIQTYNILFEFLV------KGR----KLWEASGLFNEMVKNENVLNHENCRAA 389
           V  G  PD  TY IL E L       + R    +L     L N ++KNE +L  +N R++
Sbjct: 539 VSCGCMPDESTYIILIEGLFYEGYSKEARELLSRLCSRDVLSNSLIKNEALLLDQNIRSS 598



 Score = 44.7 bits (104), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 49/220 (22%), Positives = 78/220 (35%), Gaps = 41/220 (18%)

Query: 267 RMMERGCNP---GMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLY 323
           R++E  C P     T+  L    C  G  L  A  + G M   +      + +N +I   
Sbjct: 117 RVVE-ACGPEATAATYGALVDGYCRAGL-LEDARRVVGGMPAHVQAS-SAYAHNPLIHAL 173

Query: 324 CYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNE----- 378
           C       A+ +LD M+  G  PD+ TYNIL +   KGR   +A  L + M         
Sbjct: 174 CERGRVADALVVLDGMLCRGCAPDVVTYNILLQAACKGRGYRQALELIDFMRAEGCEPNN 233

Query: 379 -----------------------NVLNHENCRAAVRVYMDSDDPYVAIKFW-------KY 408
                                  N L    C+     Y      + +I+ W         
Sbjct: 234 VTYNVIIDAMCREGDVDQARELLNSLPSRGCKPNTVNYNTVLKGFCSIERWVDADEILDE 293

Query: 409 MIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448
           M+  +C     T N+++  LC   +L +   Y + M++ G
Sbjct: 294 MVRENCPPNEATLNVIINTLCRKGLLQKVTLYLEKMSKHG 333


>gi|297816088|ref|XP_002875927.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321765|gb|EFH52186.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 657

 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 87/350 (24%), Positives = 147/350 (42%), Gaps = 18/350 (5%)

Query: 104 WNLVVD-LLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVM 161
           +N V+D LLG+N     ++   + MK++    ++ T+  +  +    ++V  A      M
Sbjct: 148 YNHVLDTLLGEN-RIQMIYMVYRDMKRDGFEPNVFTYNVLLKALCKNNKVDGAKKLLVEM 206

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVA 221
              GC  +  +  +++S++C  G   +  Q       R +P    Y  L+ G  KERD  
Sbjct: 207 SNKGCCPNAVSYTTVISSMCEVGMVKEGRQLAE----RFEPVVSVYNALINGLCKERDYK 262

Query: 222 NAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFK 281
              +   EMV E G  P NV +Y S LI  L     I    + L +M++RGC+P +    
Sbjct: 263 GGVELMSEMV-EKGISP-NVISY-STLINELSNSGQIELAFSLLAQMLKRGCHPNIHTLS 319

Query: 282 LAFEECLTGQNLRGAEF----IWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLD 337
              + C     +RG  F    +W  M+   G +P+   YN ++  +C       A+ +  
Sbjct: 320 SLVKGCF----VRGTTFDALDMWNQMIRGFGLQPNVVAYNTLVQGFCSHGNIDKAVSVFL 375

Query: 338 EMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSD 397
            M   G  P+I+TY  L     K   L  A  ++N+M+ +    N     + V       
Sbjct: 376 HMEEIGCSPNIRTYGSLINGFTKRGSLEGAVYIWNKMLTSGCCPNVVVYTSMVEALCRHS 435

Query: 398 DPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEK 447
               A    + M + +C+    T N  + GLCD   L  A K  + M ++
Sbjct: 436 KFKEAESLIEIMSKENCAPSVPTFNAFIKGLCDAGRLDWAEKVFRQMEQQ 485



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 81/347 (23%), Positives = 140/347 (40%), Gaps = 41/347 (11%)

Query: 118 DAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLL 177
           + M + ++     NV+S +T  +  S+   + +++ A +    M + GC  ++  L+SL+
Sbjct: 266 ELMSEMVEKGISPNVISYSTLINELSN---SGQIELAFSLLAQMLKRGCHPNIHTLSSLV 322

Query: 178 SAICRDGKTIDA---W-QFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIE 233
                 G T DA   W Q +R     ++P+   Y  L++G+    ++  A   F  M  E
Sbjct: 323 KGCFVRGTTFDALDMWNQMIRGFG--LQPNVVAYNTLVQGFCSHGNIDKAVSVFLHME-E 379

Query: 234 VGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNL 293
           +G  P N+  Y S LI        +   V    +M+  GC P +  +    E        
Sbjct: 380 IGCSP-NIRTYGS-LINGFTKRGSLEGAVYIWNKMLTSGCCPNVVVYTSMVEALCRHSKF 437

Query: 294 RGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYN-GAFPDIQTYN 352
           + AE +   M  +    P    +N  I   C +     A K+  +M       P+I TYN
Sbjct: 438 KEAESLIEIM-SKENCAPSVPTFNAFIKGLCDAGRLDWAEKVFRQMEQQYRCPPNIVTYN 496

Query: 353 ILFEFLVKGRKLWEASGLFNEM--------VKNENVLNHENCRAAVRVYMDSDDPYVAIK 404
            L + L K  ++ EA GL  E+            N L H +C A +        P +A++
Sbjct: 497 ELLDGLAKANRIEEAYGLTREIFMRGVEWSTSTYNTLLHGSCNAGL--------PGIALQ 548

Query: 405 FWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQV 451
               M+ N  S    T N+++   C            +G AE+ +Q+
Sbjct: 549 LVGKMMVNGKSPDEITMNMIILAYCK-----------QGKAERAVQM 584



 Score = 47.8 bits (112), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 58/259 (22%), Positives = 113/259 (43%), Gaps = 17/259 (6%)

Query: 105 NLVVDLLGKNCLFDA--MWDA-IKSMK-KENVLSLATFASVFSSYVVADRVKDAITTFDV 160
           +LV     +   FDA  MW+  I+    + NV++  T    F S+   D+   A++ F  
Sbjct: 320 SLVKGCFVRGTTFDALDMWNQMIRGFGLQPNVVAYNTLVQGFCSHGNIDK---AVSVFLH 376

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDA-WQFLRVVDGRIKPDNDTYAILLEGWEKERD 219
           ME+ GC  ++    SL++   + G    A + + +++     P+   Y  ++E   +   
Sbjct: 377 MEEIGCSPNIRTYGSLINGFTKRGSLEGAVYIWNKMLTSGCCPNVVVYTSMVEALCRHSK 436

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD-GIYETVNSLKRMMERG--CNPG 276
              A+    E++ +    P +VP +++++  L   CD G  +    + R ME+   C P 
Sbjct: 437 FKEAESLI-EIMSKENCAP-SVPTFNAFIKGL---CDAGRLDWAEKVFRQMEQQYRCPPN 491

Query: 277 MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLL 336
           +  +    +       +  A  +   +  R G    T  YN ++   C +   G A++L+
Sbjct: 492 IVTYNELLDGLAKANRIEEAYGLTREIFMR-GVEWSTSTYNTLLHGSCNAGLPGIALQLV 550

Query: 337 DEMVYNGAFPDIQTYNILF 355
            +M+ NG  PD  T N++ 
Sbjct: 551 GKMMVNGKSPDEITMNMII 569



 Score = 47.4 bits (111), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 49/222 (22%), Positives = 92/222 (41%), Gaps = 10/222 (4%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           ++  + S+  +     + K+A +  ++M +  C   V   N+ +  +C  G+   A +  
Sbjct: 420 NVVVYTSMVEALCRHSKFKEAESLIEIMSKENCAPSVPTFNAFIKGLCDAGRLDWAEKVF 479

Query: 194 RVVDG--RIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIE-VGWDPDNVPAYDSYLI- 249
           R ++   R  P+  TY  LL+G  K   +  A     E+ +  V W       Y++ L  
Sbjct: 480 RQMEQQYRCPPNIVTYNELLDGLAKANRIEEAYGLTREIFMRGVEWSTS---TYNTLLHG 536

Query: 250 TLLKGCDGIYETVNSLKRMMERGCNPG-MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIG 308
           +   G  GI   +  + +MM  G +P  +T   +    C  G+  R  + +     GR  
Sbjct: 537 SCNAGLPGI--ALQLVGKMMVNGKSPDEITMNMIILAYCKQGKAERAVQMLDLVSCGRRK 594

Query: 309 FRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQT 350
           +RPD   Y  +I   C SN     + L + M+     P +++
Sbjct: 595 WRPDVISYTNVIWGLCRSNCREDGVILFERMISERIIPILRS 636


>gi|255558280|ref|XP_002520167.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540659|gb|EEF42222.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 604

 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 80/317 (25%), Positives = 140/317 (44%), Gaps = 7/317 (2%)

Query: 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR 194
           + ++ ++   Y     ++  +     M+  G K +++  +S++  +C+ GK ++  + LR
Sbjct: 145 VVSYTTIIDGYCHVGELQKVVQLVKEMQLKGLKPNLYTYSSIILLLCKSGKVVEGEKVLR 204

Query: 195 VVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLK 253
            +  R + PD+  Y  L++G+ K  +   A K F EM       PD++    S LI  L 
Sbjct: 205 EMMKRGVFPDHVIYTTLIDGFCKLGNTQAAYKLFSEMEAR-EIVPDSIAF--SALICGLS 261

Query: 254 GCDGIYETVNSLKRMMERGCNPG-MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD 312
           G   + E       M+++G  P  +T+  L    C  G+ ++ A F+   MV +IG  P+
Sbjct: 262 GSGKVVEADKLFNEMIKKGFEPDEVTYTALIDGYCKLGE-MKKAFFLHNQMV-QIGLTPN 319

Query: 313 THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFN 372
              Y  +    C S E   A +LL EM   G   +I TYN +   L K   + +A  L  
Sbjct: 320 VVTYTALADGLCKSGELDTANELLHEMCRKGLQLNISTYNTIVNGLCKAGNILQAVKLME 379

Query: 373 EMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMH 432
           EM +     +       +  Y  + +   A +  + M++        T N+L+ GLC   
Sbjct: 380 EMKEAGLHPDTITYTTLMDAYYKTGEMVKARELLREMLDRGLQPTVVTFNVLMNGLCMSG 439

Query: 433 MLPEAVKYAKGMAEKGI 449
            L +  +  K M EKGI
Sbjct: 440 KLEDGERLLKWMLEKGI 456



 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 96/415 (23%), Positives = 172/415 (41%), Gaps = 22/415 (5%)

Query: 77  SYSHPGPAVKFFRW-SAYQLND-KHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL- 133
            Y H G   K  +     QL   K + Y ++ ++ LL K+         ++ M K  V  
Sbjct: 154 GYCHVGELQKVVQLVKEMQLKGLKPNLYTYSSIILLLCKSGKVVEGEKVLREMMKRGVFP 213

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-F 192
               + ++   +      + A   F  ME      D  A ++L+  +   GK ++A + F
Sbjct: 214 DHVIYTTLIDGFCKLGNTQAAYKLFSEMEAREIVPDSIAFSALICGLSGSGKVVEADKLF 273

Query: 193 LRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
             ++    +PD  TY  L++G+ K  ++  A     +MV ++G  P NV  Y +    L 
Sbjct: 274 NEMIKKGFEPDEVTYTALIDGYCKLGEMKKAFFLHNQMV-QIGLTP-NVVTYTALADGLC 331

Query: 253 KGCDGIYETVNSLKRMMERGCNPGM-----TFFKLAFEECLTGQNLRGAEFIWGAMVGRI 307
           K   G  +T N L   M   C  G+     T+  +    C  G  L+  + +    +   
Sbjct: 332 K--SGELDTANELLHEM---CRKGLQLNISTYNTIVNGLCKAGNILQAVKLM--EEMKEA 384

Query: 308 GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEA 367
           G  PDT  Y  ++  Y  + E   A +LL EM+  G  P + T+N+L   L    KL + 
Sbjct: 385 GLHPDTITYTTLMDAYYKTGEMVKARELLREMLDRGLQPTVVTFNVLMNGLCMSGKLEDG 444

Query: 368 SGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAG 427
             L   M++   + N     + ++ Y   ++  ++ + ++ M        S T N+L+ G
Sbjct: 445 ERLLKWMLEKGIMPNAATYNSIMKQYCIRNNMRISTEIYRGMCAQGVVPDSNTYNILIKG 504

Query: 428 LCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARK----EAVYEELLKK 478
            C    + EA    K M EK   +T  + + L +   K +K      ++EE+ ++
Sbjct: 505 HCKARNMKEAWFLHKEMVEKRFNLTASSYNALIKGFFKRKKLLEARQLFEEMRRE 559



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 81/334 (24%), Positives = 141/334 (42%), Gaps = 20/334 (5%)

Query: 136 ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-R 194
            T+ ++   Y     +K A    + M Q G   +V    +L   +C+ G+   A + L  
Sbjct: 286 VTYTALIDGYCKLGEMKKAFFLHNQMVQIGLTPNVVTYTALADGLCKSGELDTANELLHE 345

Query: 195 VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG 254
           +    ++ +  TY  ++ G  K  ++  A K   EM  E G  PD +  Y + +    K 
Sbjct: 346 MCRKGLQLNISTYNTIVNGLCKAGNILQAVKLMEEMK-EAGLHPDTI-TYTTLMDAYYKT 403

Query: 255 CDGIYETVNSLKRMMERGCNPGMTFFKLAFEE-CLTGQNLRGAEFIWGAMVGRIGFRPDT 313
            + + +    L+ M++RG  P +  F +     C++G+ L   E +   M+ + G  P+ 
Sbjct: 404 GEMV-KARELLREMLDRGLQPTVVTFNVLMNGLCMSGK-LEDGERLLKWMLEK-GIMPNA 460

Query: 314 HMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNE 373
             YN ++  YC  N    + ++   M   G  PD  TYNIL +   K R + EA  L  E
Sbjct: 461 ATYNSIMKQYCIRNNMRISTEIYRGMCAQGVVPDSNTYNILIKGHCKARNMKEAWFLHKE 520

Query: 374 MVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHM 433
           MV+    L   +  A ++ +        A + ++ M        +E  NL V    DM+ 
Sbjct: 521 MVEKRFNLTASSYNALIKGFFKRKKLLEARQLFEEMRREGLVASAEIYNLFV----DMN- 575

Query: 434 LPEAVKYAKGMAEKGIQVTPFALSKLKQILIKAR 467
                 Y +G  E  +++   A+ K   +L KAR
Sbjct: 576 ------YEEGNMETTLELCDEAIEKC--LLDKAR 601



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 62/263 (23%), Positives = 117/263 (44%), Gaps = 5/263 (1%)

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYAILLEGWEKERD 219
           M + G + ++   N++++ +C+ G  + A + +  + +  + PD  TY  L++ + K  +
Sbjct: 346 MCRKGLQLNISTYNTIVNGLCKAGNILQAVKLMEEMKEAGLHPDTITYTTLMDAYYKTGE 405

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTF 279
           +  A++   EM ++ G  P  V    + L+  L     + +    LK M+E+G  P    
Sbjct: 406 MVKARELLREM-LDRGLQPTVVTF--NVLMNGLCMSGKLEDGERLLKWMLEKGIMPNAAT 462

Query: 280 FKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEM 339
           +    ++     N+R +  I+  M  + G  PD++ YN++I  +C +     A  L  EM
Sbjct: 463 YNSIMKQYCIRNNMRISTEIYRGMCAQ-GVVPDSNTYNILIKGHCKARNMKEAWFLHKEM 521

Query: 340 VYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDP 399
           V         +YN L +   K +KL EA  LF EM +   V + E     V +  +  + 
Sbjct: 522 VEKRFNLTASSYNALIKGFFKRKKLLEARQLFEEMRREGLVASAEIYNLFVDMNYEEGNM 581

Query: 400 YVAIKFWKYMIENHCSDLSETGN 422
              ++     IE    D +  GN
Sbjct: 582 ETTLELCDEAIEKCLLDKARNGN 604



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 80/335 (23%), Positives = 127/335 (37%), Gaps = 12/335 (3%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAIC--RDGKTIDAWQFLR 194
            F   F   V A  + +A   FD +  YG      + N  L+ +   RD   +    F  
Sbjct: 41  VFDVFFQVLVEAGLLNEARKFFDKLLNYGVALSAGSCNLYLTCLSSKRDMLGMVLKVFSE 100

Query: 195 VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG 254
                +  + ++Y IL+    +   +  A      M  + G  PD V    SY   +   
Sbjct: 101 FPQLGVCWNTESYNILMNSLFRLGKIREAHHLLMRMEFK-GCIPDVV----SYTTIIDGY 155

Query: 255 C--DGIYETVNSLKRMMERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRP 311
           C    + + V  +K M  +G  P + T+  +    C +G+ + G + +   M  + G  P
Sbjct: 156 CHVGELQKVVQLVKEMQLKGLKPNLYTYSSIILLLCKSGKVVEGEKVLREMM--KRGVFP 213

Query: 312 DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLF 371
           D  +Y  +I  +C    T AA KL  EM      PD   ++ L   L    K+ EA  LF
Sbjct: 214 DHVIYTTLIDGFCKLGNTQAAYKLFSEMEAREIVPDSIAFSALICGLSGSGKVVEADKLF 273

Query: 372 NEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDM 431
           NEM+K     +     A +  Y    +   A      M++   +    T   L  GLC  
Sbjct: 274 NEMIKKGFEPDEVTYTALIDGYCKLGEMKKAFFLHNQMVQIGLTPNVVTYTALADGLCKS 333

Query: 432 HMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKA 466
             L  A +    M  KG+Q+     + +   L KA
Sbjct: 334 GELDTANELLHEMCRKGLQLNISTYNTIVNGLCKA 368



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 57/238 (23%), Positives = 95/238 (39%), Gaps = 4/238 (1%)

Query: 240 NVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEE-CLTGQNLRGAEF 298
           N  +Y+  + +L +    I E  + L RM  +GC P +  +    +  C  G+  +  + 
Sbjct: 109 NTESYNILMNSLFR-LGKIREAHHLLMRMEFKGCIPDVVSYTTIIDGYCHVGELQKVVQL 167

Query: 299 IWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFL 358
           +    +   G +P+ + Y+ +I L C S +     K+L EM+  G FPD   Y  L +  
Sbjct: 168 VKEMQLK--GLKPNLYTYSSIILLLCKSGKVVEGEKVLREMMKRGVFPDHVIYTTLIDGF 225

Query: 359 VKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLS 418
            K      A  LF+EM   E V +     A +     S     A K +  MI+       
Sbjct: 226 CKLGNTQAAYKLFSEMEAREIVPDSIAFSALICGLSGSGKVVEADKLFNEMIKKGFEPDE 285

Query: 419 ETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELL 476
            T   L+ G C +  + +A      M + G+       + L   L K+ +     ELL
Sbjct: 286 VTYTALIDGYCKLGEMKKAFFLHNQMVQIGLTPNVVTYTALADGLCKSGELDTANELL 343


>gi|449508067|ref|XP_004163208.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 830

 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 95/370 (25%), Positives = 172/370 (46%), Gaps = 23/370 (6%)

Query: 88  FRWSAYQLNDKHSPYAWNLVVDLLG--KNCLFDAMWDAIKSMKKENV-LSLATFASVFSS 144
           FR+ AY       P A+     +LG  +N   D  +     M K+    +  T++++ + 
Sbjct: 229 FRYDAY-------PNAFTYTSLILGHCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLING 281

Query: 145 YVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPD 203
                R+++A+   + M Q G +  V+     L ++C  G + +A + L  +  R   P+
Sbjct: 282 LCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPN 341

Query: 204 NDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVN 263
             T+  L+ G  ++     A   + +M+ + G  P  V  Y++ +  L    +G +ET  
Sbjct: 342 IQTFTALISGLSRDGKFEIAIGLYHKMLAD-GLVPTTV-TYNALINQLC--VEGRFETAF 397

Query: 264 SL-KRMMERGCNPG-MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMIS 321
           ++ K M+  G  P   T+ ++    CL G +++ A  I+  M+ + G  P+   YN +I 
Sbjct: 398 TIFKWMLSHGSLPSTQTYNEIIKCFCLMG-DIQKAMVIFDKML-KAGSSPNVITYNTLIY 455

Query: 322 LYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVL 381
            YC       AM+LL+ M  NG  PD  TY  L     +G KL  A+ LF  M+++    
Sbjct: 456 GYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISP 515

Query: 382 NHENCRAAVRVYMD--SDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVK 439
           NH    A +  Y +    D  +A+ FWK M+E+     S+T N++++G    + + EA  
Sbjct: 516 NHVTYTAIIDGYFNLAKVDDALAL-FWK-MVESGNLPSSQTYNVMISGFSKTNSISEAEN 573

Query: 440 YAKGMAEKGI 449
           +   M ++G+
Sbjct: 574 FCGKMVKQGL 583



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 80/353 (22%), Positives = 141/353 (39%), Gaps = 45/353 (12%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVM 161
            +N +++ L     F+  +   K M     L S  T+  +   + +   ++ A+  FD M
Sbjct: 379 TYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKM 438

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDV 220
            + G   +V   N+L+   C+ G   +A + L ++ G  +KPD  TY  L+ G+ +   +
Sbjct: 439 LKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKL 498

Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFF 280
            +A   F  M +E G  P++V  Y + +       DG                     +F
Sbjct: 499 EHATSLFYGM-MEHGISPNHV-TYTAII-------DG---------------------YF 528

Query: 281 KLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMV 340
            LA         +  A  ++  MV   G  P +  YN+MIS +  +N    A     +MV
Sbjct: 529 NLA--------KVDDALALFWKMV-ESGNLPSSQTYNVMISGFSKTNSISEAENFCGKMV 579

Query: 341 YNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNE---NVLNHENCRAAVRVYMDSD 397
             G  P++ TY    + L +  +   A  +F+EM K     N+  + +    +     ++
Sbjct: 580 KQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAE 639

Query: 398 DPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQ 450
           D  +       +    C    +T   LV GLC      EA +    M +KG+Q
Sbjct: 640 DAEM-YNLLARLTHYGCEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQKKGLQ 691



 Score = 45.4 bits (106), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 66/285 (23%), Positives = 119/285 (41%), Gaps = 24/285 (8%)

Query: 118 DAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLL 177
           DA+    K ++  N+ S  T+  + S +   + + +A      M + G   +V    S +
Sbjct: 535 DALALFWKMVESGNLPSSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFI 594

Query: 178 SAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVANAKK-TFGEMVIEVG 235
             +CR+G+T  A++    ++ R   P+  TY+ L+ G  +E    +A+       +   G
Sbjct: 595 DGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDAEMYNLLARLTHYG 654

Query: 236 WDPDNVPAYDSYLITLLKGCDG---IYETVNSLKRMMERGCNPGMTFFK-LAFEECLTGQ 291
            +P NV  Y     TL+KG  G    YE    +  M ++G  P    ++ L   EC   +
Sbjct: 655 CEP-NVDTYT----TLVKGLCGEGRCYEADQLVVSMQKKGLQPSEEIYRALLIGEC---K 706

Query: 292 NLR--GAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQ 349
           NL+   A  I+ +M   +GF+     Y  +I   C  N    A  +   M+      D  
Sbjct: 707 NLKVESALNIFYSM-DTLGFQLHLSDYKALICALCKENFIEEAQCIFQTMLEKHWNSDEV 765

Query: 350 TYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYM 394
            + +L + L+K        G  +  +K  +V+   NC    + Y+
Sbjct: 766 AWTVLLDGLLK-------EGETDLCLKLLHVMESRNCTLNFQTYV 803



 Score = 43.5 bits (101), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 66/143 (46%)

Query: 338 EMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSD 397
           +M+ +G  P + T+N +   L K  ++ EA  + + + + +   N     + +  +  + 
Sbjct: 192 KMLNSGIRPSLLTFNTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTSLILGHCRNH 251

Query: 398 DPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALS 457
           +  +A   +  M+++ C   S T + L+ GLC    L EA+   + M +KGI+ T +  +
Sbjct: 252 NLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYT 311

Query: 458 KLKQILIKARKEAVYEELLKKCK 480
                L  A   +   ELL K K
Sbjct: 312 IPLVSLCDAGCSSEAVELLGKMK 334


>gi|356561677|ref|XP_003549106.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Glycine max]
          Length = 511

 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 97/428 (22%), Positives = 167/428 (39%), Gaps = 75/428 (17%)

Query: 81  PGPAVKFFRWSAYQLNDKHSPYAWNLVVDL-------------LGKNCL---------FD 118
           P P   F    +  +N+KH P   +L                 +  NC          F 
Sbjct: 54  PPPTFHFNNILSSLVNNKHYPTVISLFKQFEPNGITPDLCTLSILINCFCHQAHITLAFS 113

Query: 119 AMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLS 178
              + +K     N ++L T   +         +K A+   D +   G + D  +  +L++
Sbjct: 114 VFANILKRGFHPNAITLNT---LIKGLCFRGEIKKALYFHDQLVAQGFQLDQVSYGTLIN 170

Query: 179 AICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWD 237
            +C+ G+T    + LR ++G  +KPD   Y  ++    K + + +A   + EM+++ G  
Sbjct: 171 GLCKTGETKAVARLLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDACDVYSEMIVK-GIS 229

Query: 238 PDNVPAYDSYLITLLKG-C--DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLR 294
           PD V    +Y  TL+ G C    + E  + L  M  +  NP +  F +  +       ++
Sbjct: 230 PDVV----TY-TTLIHGFCIMGHLKEAFSLLNEMKLKNINPNVCTFNILIDALSKEGKMK 284

Query: 295 GAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNIL 354
            A+ +   M+ +   +PD   YN +I  Y   +E   A  +   M   G  PD+Q Y  +
Sbjct: 285 EAKILLAVMM-KACIKPDVFTYNSLIDGYFLVDEVKHAKYVFYSMAQRGVTPDVQCYTNM 343

Query: 355 FEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHC 414
              L K + + EA  LF EM        H+N    +  Y                     
Sbjct: 344 INGLCKTKMVDEAMSLFEEM-------KHKNMIPDIVTY--------------------- 375

Query: 415 SDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARK----EA 470
                  N L+ GLC  H L  A+   K M E+GIQ   ++ + L   L K+ +    + 
Sbjct: 376 -------NSLIDGLCKNHHLERAIALCKRMKEQGIQPDVYSYTILLDGLCKSGRLEDAKE 428

Query: 471 VYEELLKK 478
           +++ LL K
Sbjct: 429 IFQRLLAK 436



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 64/281 (22%), Positives = 112/281 (39%), Gaps = 41/281 (14%)

Query: 104 WNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVME 162
           +N +++ L KN L     D    M  + +   + T+ ++   + +   +K+A +  + M+
Sbjct: 200 YNTIINSLCKNKLLGDACDVYSEMIVKGISPDVVTYTTLIHGFCIMGHLKEAFSLLNEMK 259

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV-DGRIKPDNDTYAILLEGWEKERDVA 221
                 +V   N L+ A+ ++GK  +A   L V+    IKPD  TY  L++G+    +V 
Sbjct: 260 LKNINPNVCTFNILIDALSKEGKMKEAKILLAVMMKACIKPDVFTYNSLIDGYFLVDEVK 319

Query: 222 NAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFK 281
           +AK  F  M  + G  PD                      V     M+   C   M    
Sbjct: 320 HAKYVFYSMA-QRGVTPD----------------------VQCYTNMINGLCKTKMVDEA 356

Query: 282 LAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVY 341
           ++  E +  +N+                 PD   YN +I   C ++    A+ L   M  
Sbjct: 357 MSLFEEMKHKNMI----------------PDIVTYNSLIDGLCKNHHLERAIALCKRMKE 400

Query: 342 NGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLN 382
            G  PD+ +Y IL + L K  +L +A  +F  ++     LN
Sbjct: 401 QGIQPDVYSYTILLDGLCKSGRLEDAKEIFQRLLAKGYHLN 441


>gi|297795031|ref|XP_002865400.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311235|gb|EFH41659.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 675

 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 79/324 (24%), Positives = 131/324 (40%), Gaps = 40/324 (12%)

Query: 53  TVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLG 112
            +++ L    I +S + V  VL          V FF W+  +        ++ +++  LG
Sbjct: 98  AIQNCLSSLGIDLSIDIVSDVLNRGNLSGEAMVTFFNWAIREPGVSKDVDSYCVILRALG 157

Query: 113 KNCLFDAMWDAIKSMKKENV-LSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVF 171
           +   F  M D ++ M  E V   L        S+V A  V+ AI  F+  E YG K    
Sbjct: 158 RRKFFSFMMDVLRGMVCEGVNPDLRCLTIAMDSFVRAHYVRRAIELFEESESYGVKCSTE 217

Query: 172 ALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMV 231
           + N+LL  +C       A        G+I  D+ +Y I++ GW K  ++   +K   EMV
Sbjct: 218 SFNALLRCLCERSHVSAANSVFNAKKGKIPFDSCSYNIMISGWSKLGEIEGMEKVLKEMV 277

Query: 232 IEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQ 291
            E G+ PD +    S+LI  L     I ++V     M  +G                   
Sbjct: 278 -EGGFVPDCLSY--SHLIEGLGRAGRINDSVEIFDNMKHKGSV----------------- 317

Query: 292 NLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTY 351
                               D ++YN MI  +  + +   +M+    M+     P+++TY
Sbjct: 318 -------------------LDANVYNAMICNFISARDFDESMRYYRRMLDEECEPNLETY 358

Query: 352 NILFEFLVKGRKLWEASGLFNEMV 375
           + L   L+KGRK+ +A  +F EM+
Sbjct: 359 SKLVSGLIKGRKVSDALEIFEEML 382



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 86/168 (51%), Gaps = 3/168 (1%)

Query: 283 AFEECLTGQN-LRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVY 341
           A   CL  ++ +  A  ++ A  G+I F  D+  YN+MIS +    E     K+L EMV 
Sbjct: 221 ALLRCLCERSHVSAANSVFNAKKGKIPF--DSCSYNIMISGWSKLGEIEGMEKVLKEMVE 278

Query: 342 NGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYV 401
            G  PD  +Y+ L E L +  ++ ++  +F+ M    +VL+     A +  ++ + D   
Sbjct: 279 GGFVPDCLSYSHLIEGLGRAGRINDSVEIFDNMKHKGSVLDANVYNAMICNFISARDFDE 338

Query: 402 AIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
           ++++++ M++  C    ET + LV+GL     + +A++  + M  +GI
Sbjct: 339 SMRYYRRMLDEECEPNLETYSKLVSGLIKGRKVSDALEIFEEMLSRGI 386


>gi|296085044|emb|CBI28459.3| unnamed protein product [Vitis vinifera]
          Length = 973

 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 75/317 (23%), Positives = 140/317 (44%), Gaps = 5/317 (1%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RV 195
            + ++ +++    RV+++    + M + G   DVF  NSL+   C+  +  +A  +L  +
Sbjct: 453 VYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEM 512

Query: 196 VDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
           ++ R++P+  TY   ++G+ K  ++  A + F EM +  G  P NV  Y + +    K  
Sbjct: 513 LERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEM-LSCGVLP-NVGIYTALIEGHCKEG 570

Query: 256 DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHM 315
           + + E  +  + ++ R     +  + +          +  A  I+  +  + G  P+   
Sbjct: 571 N-VTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEK-GLLPNAFT 628

Query: 316 YNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
           YN +IS  C       A +LL+EM   G  PDI TYNIL + L K  ++  A  LF+++ 
Sbjct: 629 YNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIE 688

Query: 376 KNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLP 435
                 N     A V  Y  S +P  A +  + M+       +   N+++   C      
Sbjct: 689 GRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFE 748

Query: 436 EAVKYAKGMAEKGIQVT 452
           +A+   + M EKG   T
Sbjct: 749 KALDLFQEMLEKGFAST 765



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 82/357 (22%), Positives = 145/357 (40%), Gaps = 55/357 (15%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-V 195
           T+ +    Y  A  ++ A   F+ M   G   +V    +L+   C++G   +A+   R +
Sbjct: 523 TYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFI 582

Query: 196 VDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
           +  R+  D  TY++L+ G  +   +  A   F E+  E G  P N   Y+S +    K  
Sbjct: 583 LSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQ-EKGLLP-NAFTYNSLISGSCKQG 640

Query: 256 DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHM 315
           + + +    L+ M  +G NP +  + +  +       +  A+ ++  + GR G  P+   
Sbjct: 641 N-VDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGR-GLTPNCVT 698

Query: 316 YNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEF------------------ 357
           Y  M+  YC S    AA +LL+EM+  G  PD   YN++  F                  
Sbjct: 699 YAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEML 758

Query: 358 ------------LVKG----RKLWEASGLFNEMVKNENVLNH--------ENCRAAVRVY 393
                       L++G     KL EA+ L  EM++ + + NH         NC+A +   
Sbjct: 759 EKGFASTVSFNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGE 818

Query: 394 MDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQ 450
                   A + W  M E +    ++T   L+ G  ++  + E     + M  KGI+
Sbjct: 819 --------AKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIE 867



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 64/263 (24%), Positives = 110/263 (41%), Gaps = 24/263 (9%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           SL +  S+    +  ++V+     FD M  +    DV+   +++SA C+ G   DA + L
Sbjct: 188 SLLSCNSLLGDLLKGNKVELFWKVFDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKRVL 247

Query: 194 ------------------RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVG 235
                              +VD  + PD  TY IL+ G+  E+    AK    EM I+VG
Sbjct: 248 LEMGEKARLLDEAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLEM-IDVG 306

Query: 236 WDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEE-CLTGQNLR 294
             P+ +  Y++ +   ++  D I +       M+  G    +  +       C  G+  +
Sbjct: 307 LKPEPI-TYNALIDGFMRQGD-IEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEK 364

Query: 295 GAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNIL 354
             E +   M    G  PD+  Y+++I  +C       A +LLDEM      P + TY+++
Sbjct: 365 ALEIMQEMM--EKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVI 422

Query: 355 FEFLVKGRKLWEASGLFNEMVKN 377
              L +   L   + +  EMV N
Sbjct: 423 INGLCRCGNLQGTNAILREMVMN 445



 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 89/412 (21%), Positives = 159/412 (38%), Gaps = 71/412 (17%)

Query: 82  GPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFAS 140
           GP    FR S    N        +L+ DLL  N + +  W     M    VL  + T+ +
Sbjct: 179 GPKNFEFRPSLLSCN--------SLLGDLLKGNKV-ELFWKVFDGMCAHKVLPDVYTYTN 229

Query: 141 VFSSYVVADRVKDA-----------------ITTFDVMEQYGCKHDVFALNSLLSAICRD 183
           + S++     VKDA                 I     M   G   D++  + L++  C +
Sbjct: 230 MISAHCKVGNVKDAKRVLLEMGEKARLLDEAIELKRSMVDKGLVPDLYTYDILINGFCME 289

Query: 184 GKTIDA-WQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVP 242
            ++ +A    L ++D  +KP+  TY  L++G+ ++ D+  A +   EMV   G +  N+ 
Sbjct: 290 KRSREAKLMLLEMIDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMV-ACGIEA-NLI 347

Query: 243 AYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQN---------- 292
            +++ L  + K    + + +  ++ MME+G  P    + L  E    GQN          
Sbjct: 348 IWNTLLNGVCKA-GKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDE 406

Query: 293 -------------------------LRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSN 327
                                    L+G   I   MV   G +P+  +Y  +++ +    
Sbjct: 407 MKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMN-GLKPNAVVYTTLMTAHAKEG 465

Query: 328 ETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCR 387
               +  +L+ M   G  PD+  YN L     K +++ EA     EM++     N     
Sbjct: 466 RVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYG 525

Query: 388 AAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETG--NLLVAGLCDMHMLPEA 437
           A +  Y  + +  +A +++  M+   C  L   G    L+ G C    + EA
Sbjct: 526 AFIDGYSKAGEMEIADRYFNEMLS--CGVLPNVGIYTALIEGHCKEGNVTEA 575



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 65/277 (23%), Positives = 120/277 (43%), Gaps = 11/277 (3%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLA-TFASVFSSYVVADRVKDAITTFDVM 161
            +++++  L +N      +     ++++ +L  A T+ S+ S       V  A    + M
Sbjct: 593 TYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEM 652

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDV 220
              G   D+   N L+  +C+ G+   A      ++GR + P+  TYA +++G+ K ++ 
Sbjct: 653 CIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNP 712

Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC--DGIYETVNSLKRMMERGCNPGMT 278
             A +   EM++  G  PD       Y + L   C  +   + ++  + M+E+G    ++
Sbjct: 713 TAAFQLLEEMLLR-GVPPDAFI----YNVILNFCCKEEKFEKALDLFQEMLEKGFASTVS 767

Query: 279 FFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDE 338
           F  L    C +G+ L+ A  +   M+ +  F P+   Y  +I   C +   G A +L  E
Sbjct: 768 FNTLIEGYCKSGK-LQEANHLLEEMIEK-QFIPNHVTYTSLIDHNCKAGMMGEAKRLWLE 825

Query: 339 MVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
           M      P  +TY  L         + E S LF EMV
Sbjct: 826 MQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMV 862



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 90/417 (21%), Positives = 164/417 (39%), Gaps = 61/417 (14%)

Query: 7   RRHHDDPSPDPHNKRKRSTFASHLDVPNLPPTIKTLCEII------ANTPSPTVEDVLDK 60
           R     P P  H   K ++F+S   +     +++ +  ++      A   S  +   L+ 
Sbjct: 7   RSFMAKPRPISH---KAASFSSSQALTQNEDSVREITTLLNSHNWQALMESSDIPKKLNT 63

Query: 61  TLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWN----LVVDLLGKNCL 116
            +IR        +L+     P   + FF WS +++    +    +    L V+L   N  
Sbjct: 64  DIIR------SVILQNQVGDPKRLLNFFYWSQHKMGTSTAQQDLDVLSALAVNLCNSN-W 116

Query: 117 FDAMWDAIKSMKKENVLSLATFASVFSSY---------VVADRVKD----------AITT 157
           +    D IK + + +   LA   S+   Y         V+ D + D          A+  
Sbjct: 117 YGPASDLIKCIIRNSDSPLAVLGSIVKCYRSCNGSPNSVIFDMLMDSYRKMGFLVEAVNV 176

Query: 158 FDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDG----RIKPDNDTYAILLEG 213
           F   + +  +  + + NSLL  + +  K    W   +V DG    ++ PD  TY  ++  
Sbjct: 177 FLGPKNFEFRPSLLSCNSLLGDLLKGNKVELFW---KVFDGMCAHKVLPDVYTYTNMISA 233

Query: 214 WEKERDVANAKKTFGEM---------VIEVGW---DPDNVPAYDSYLITLLKGC--DGIY 259
             K  +V +AK+   EM          IE+     D   VP   +Y I +   C      
Sbjct: 234 HCKVGNVKDAKRVLLEMGEKARLLDEAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSR 293

Query: 260 ETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMM 319
           E    L  M++ G  P    +    +  +   ++  A  I   MV   G   +  ++N +
Sbjct: 294 EAKLMLLEMIDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVA-CGIEANLIIWNTL 352

Query: 320 ISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK 376
           ++  C + +   A++++ EM+  G  PD QTY++L E   +G+ +  A  L +EM K
Sbjct: 353 LNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKK 409



 Score = 46.2 bits (108), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 52/247 (21%), Positives = 92/247 (37%), Gaps = 18/247 (7%)

Query: 109 DLLGKNCLFDAMWDAIKSMKKENVL----------SLATFASVFSSYVVADRVKDAITTF 158
           D++  N L D +  A +  + +N+           +  T+A++   Y  +     A    
Sbjct: 660 DIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLL 719

Query: 159 DVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKER 218
           + M   G   D F  N +L+  C++ K   A    + +  +      ++  L+EG+ K  
Sbjct: 720 EEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFASTVSFNTLIEGYCKSG 779

Query: 219 DVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD-GIYETVNSL-KRMMERGCNPG 276
            +  A     EM+     +   +P + +Y   +   C  G+      L   M ER   P 
Sbjct: 780 KLQEANHLLEEMI-----EKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPT 834

Query: 277 MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLL 336
              +           N+     ++  MV + G  PD   Y +MI  YC       A KL 
Sbjct: 835 AKTYTSLLHGYHNIGNMSEVSALFEEMVAK-GIEPDKMTYYVMIDAYCREGNVMEACKLK 893

Query: 337 DEMVYNG 343
           DE++  G
Sbjct: 894 DEILVKG 900



 Score = 45.8 bits (107), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 58/228 (25%), Positives = 90/228 (39%), Gaps = 31/228 (13%)

Query: 280 FKLAFEEC--LTGQNLRG--AEFIWGAMVGRIGFR--PDTHMYNMMISLYCYSN------ 327
           F+ +   C  L G  L+G   E  W    G    +  PD + Y  MIS +C         
Sbjct: 185 FRPSLLSCNSLLGDLLKGNKVELFWKVFDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAK 244

Query: 328 ----ETGAAMKLLDE-------MVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV- 375
               E G   +LLDE       MV  G  PD+ TY+IL       ++  EA  +  EM+ 
Sbjct: 245 RVLLEMGEKARLLDEAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLEMID 304

Query: 376 ---KNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMH 432
              K E +  +    A +  +M   D   A +    M+           N L+ G+C   
Sbjct: 305 VGLKPEPITYN----ALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAG 360

Query: 433 MLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKCK 480
            + +A++  + M EKG++      S L +   + +  A   ELL + K
Sbjct: 361 KMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMK 408


>gi|296087921|emb|CBI35204.3| unnamed protein product [Vitis vinifera]
          Length = 543

 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 80/325 (24%), Positives = 139/325 (42%), Gaps = 13/325 (4%)

Query: 131 NVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAW 190
           N+ +L    + F  ++   ++ +A+  FD M   G + DV    +L++ +C+ G T  A 
Sbjct: 95  NIYTLHILINSFC-HLNRGKIGEALHLFDKMIGEGFRPDVVTYGTLINGLCKVGNTSAAI 153

Query: 191 QFL-RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLI 249
           + L  +V    +P+   Y  +++   K+R V  A   F EMV + G  PD +  Y+S + 
Sbjct: 154 RLLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTK-GISPD-IFTYNSLIH 211

Query: 250 TLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGF 309
            L   C+  +     L  M++    P +  F    +       +  A  +   M+ R G 
Sbjct: 212 ALCNLCEWKH-VATLLNEMVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGGC 270

Query: 310 RPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASG 369
            P+   YN +I+ YC       AM L  EM      PD  TY+ L   L    +L +A  
Sbjct: 271 MPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVERLQDAIA 330

Query: 370 LFNEMVKNENVLNHENCRAAVRVYMD--SDDPYV--AIKFWKYMIENHCSDLSETGNLLV 425
           LF+EMV    + N        R+ +D    + Y+  A+   K +  ++     +  N+ +
Sbjct: 331 LFHEMVACSQIPN----LVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAI 386

Query: 426 AGLCDMHMLPEAVKYAKGMAEKGIQ 450
            G+C    L  A      ++ KG+Q
Sbjct: 387 DGMCRAGELEAARDLFSNLSSKGLQ 411



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 83/359 (23%), Positives = 152/359 (42%), Gaps = 32/359 (8%)

Query: 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FL 193
           + T+ ++ +          AI     M Q  C+ +VFA N+++ ++C+D +  +A+  F 
Sbjct: 133 VVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTEAFNLFS 192

Query: 194 RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLK 253
            +V   I PD  TY  L+       +  +      EMV +    PD V ++++ +  L K
Sbjct: 193 EMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMV-DSKIMPD-VVSFNTVVDALCK 250

Query: 254 GCDGIYETVNSLKRMMER-GCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD 312
               + E  + + +M++R GC P +  +          Q +  A +++G M  R    PD
Sbjct: 251 E-GKVTEAHDVVDKMIQRGGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMC-RQELIPD 308

Query: 313 THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFN 372
           T  Y+ +I   C+      A+ L  EMV     P++ TY IL ++L K R L EA  L  
Sbjct: 309 TVTYSTLIHGLCHVERLQDAIALFHEMVACSQIPNLVTYRILLDYLCKNRYLAEAMALLK 368

Query: 373 EM--------VKNENVLNHENCR-----AAVRVYMDSDDPYVAIKFWKYMIENHCSDLSE 419
            +        ++  N+     CR     AA  ++ +     +    W Y I         
Sbjct: 369 AIEGSNLDPDIQVNNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVWTYSI--------- 419

Query: 420 TGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKK 478
               ++ GLC   +L EA K  + M E G  +     + + +  ++  + +   +LL++
Sbjct: 420 ----MINGLCRRGLLDEASKLFREMDENGCTLNGCIYNTITRGFLRNNETSRAIQLLQE 474



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 86/346 (24%), Positives = 149/346 (43%), Gaps = 13/346 (3%)

Query: 91  SAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVAD 149
           S  Q N + + +A+N ++D L K+      ++    M  + +   + T+ S+  +     
Sbjct: 158 SMVQKNCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLC 217

Query: 150 RVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIK-----PDN 204
             K   T  + M       DV + N+++ A+C++GK  +A     VVD  I+     P+ 
Sbjct: 218 EWKHVATLLNEMVDSKIMPDVVSFNTVVDALCKEGKVTEAHD---VVDKMIQRGGCMPNV 274

Query: 205 DTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNS 264
            +Y  L+ G+ K + +  A   FGEM  +    PD V    S LI  L   + + + +  
Sbjct: 275 ISYNTLINGYCKIQRIDKAMYLFGEMCRQ-ELIPDTVTY--STLIHGLCHVERLQDAIAL 331

Query: 265 LKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYC 324
              M+     P +  +++  +     + L  A  +  A+ G     PD  + N+ I   C
Sbjct: 332 FHEMVACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGS-NLDPDIQVNNIAIDGMC 390

Query: 325 YSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHE 384
            + E  AA  L   +   G  PD+ TY+I+   L +   L EAS LF EM +N   LN  
Sbjct: 391 RAGELEAARDLFSNLSSKGLQPDVWTYSIMINGLCRRGLLDEASKLFREMDENGCTLNGC 450

Query: 385 NCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCD 430
                 R ++ +++   AI+  + M+    S  + T  L V  L D
Sbjct: 451 IYNTITRGFLRNNETSRAIQLLQEMVARGFSADASTMTLFVKMLSD 496



 Score = 42.7 bits (99), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 56/133 (42%), Gaps = 16/133 (12%)

Query: 308 GFRPDTHMYNMMISLYCYSN--ETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLW 365
           G  P+ +  +++I+ +C+ N  + G A+ L D+M+  G  PD+ TY  L   L K     
Sbjct: 91  GIPPNIYTLHILINSFCHLNRGKIGEALHLFDKMIGEGFRPDVVTYGTLINGLCKVGNTS 150

Query: 366 EASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYV-------AIKFWKYMIENHCSDLS 418
            A  L   MV+       +NC+  V  Y    D          A   +  M+    S   
Sbjct: 151 AAIRLLGSMVQ-------KNCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDI 203

Query: 419 ETGNLLVAGLCDM 431
            T N L+  LC++
Sbjct: 204 FTYNSLIHALCNL 216


>gi|115446773|ref|NP_001047166.1| Os02g0565400 [Oryza sativa Japonica Group]
 gi|113536697|dbj|BAF09080.1| Os02g0565400, partial [Oryza sativa Japonica Group]
          Length = 353

 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 83/335 (24%), Positives = 142/335 (42%), Gaps = 42/335 (12%)

Query: 152 KDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDG-RIKPDNDTYAIL 210
           K A+   D M   GC  D+   N +++ IC++G+  DA +FL+ +     +P+  +Y I+
Sbjct: 9   KQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIV 68

Query: 211 LEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYE-TVNSLKRMM 269
           L+G        +A++  GEM  + G  P NV  ++  +  L +   G+ E  +  L+++ 
Sbjct: 69  LKGLCTAERWEDAEELMGEMG-QKGC-PPNVVTFNMLISFLCR--KGLVEPALEVLEQIP 124

Query: 270 ERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNET 329
           + GC P    +          + +  A      MV R G  PD   YN +++  C S E 
Sbjct: 125 KYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSR-GCYPDIVSYNTLLTALCRSGEV 183

Query: 330 GAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK---NENVLNHEN- 385
             A++LL ++   G  P + +YN + + L K  K  EA  L NEMV      +++ +   
Sbjct: 184 DVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTI 243

Query: 386 ----CRA-----AVRVYMDSDD----------------------PYVAIKFWKYMIENHC 414
               CR      A+R +    D                       + AI  + YMI N C
Sbjct: 244 AAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGC 303

Query: 415 SDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
                T  +L+ GL    ++ EA      +  +G+
Sbjct: 304 MPNESTYTILIEGLAYEGLIKEARDLLDELCSRGV 338



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 74/291 (25%), Positives = 119/291 (40%), Gaps = 38/291 (13%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           ++  V      A+R +DA      M Q GC  +V   N L+S +CR G    A + L  +
Sbjct: 64  SYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQI 123

Query: 197 DG-RIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL--- 252
                 P++ +Y  LL  + K++ +  A   F ++++  G  PD V +Y++ L  L    
Sbjct: 124 PKYGCTPNSLSYNPLLHAFCKQKKMDKAM-AFLDLMVSRGCYPDIV-SYNTLLTALCRSG 181

Query: 253 --------------KGC-----------DGIY------ETVNSLKRMMERGCNPGMTFFK 281
                         KGC           DG+       E +  L  M+ +G  P +  + 
Sbjct: 182 EVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYS 241

Query: 282 LAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVY 341
                      +  A   +G  V  +G RP+T +YN +I   C   ET +A+ L   M+ 
Sbjct: 242 TIAAGLCREDRIEDAIRAFGK-VQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIG 300

Query: 342 NGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRV 392
           NG  P+  TY IL E L     + EA  L +E+     V      + A+R+
Sbjct: 301 NGCMPNESTYTILIEGLAYEGLIKEARDLLDELCSRGVVRKSLINKGAIRL 351



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 49/223 (21%), Positives = 90/223 (40%), Gaps = 3/223 (1%)

Query: 257 GIYETVNSLKRMMERGCNPGMTFFKLAFEE-CLTGQNLRGAEFIWGAMVGRIGFRPDTHM 315
           G  + +  L  M ++GC P +  + +     C  G+     EF+    +   G  P+T  
Sbjct: 7   GYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKN--LPSYGCEPNTVS 64

Query: 316 YNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
           YN+++   C +     A +L+ EM   G  P++ T+N+L  FL +   +  A  +  ++ 
Sbjct: 65  YNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIP 124

Query: 376 KNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLP 435
           K     N  +    +  +        A+ F   M+   C     + N L+  LC    + 
Sbjct: 125 KYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVD 184

Query: 436 EAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKK 478
            AV+    + +KG      + + +   L KA K     ELL +
Sbjct: 185 VAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNE 227


>gi|297741319|emb|CBI32450.3| unnamed protein product [Vitis vinifera]
          Length = 851

 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 77/337 (22%), Positives = 148/337 (43%), Gaps = 8/337 (2%)

Query: 124 IKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRD 183
           I+S    NV    T+  +   +     ++  +  F  ME+ GC  +V   N+L+ A C+ 
Sbjct: 2   IRSRVSPNVY---TYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKM 58

Query: 184 GKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVP 242
           G+  +A+  L+ +  + ++P+  +Y +++ G  +E  +  A +   EM  + G+ PD V 
Sbjct: 59  GRIDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYK-GFTPDEV- 116

Query: 243 AYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGA 302
            Y++ L    K  +  ++ +     M+  G +P +  +          +NL  A   +  
Sbjct: 117 TYNTLLNGYCKEGN-FHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQ 175

Query: 303 MVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGR 362
           M  R G RP+   Y  +I  +        A ++L+EM  +G  P + TYN          
Sbjct: 176 MRIR-GLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLE 234

Query: 363 KLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGN 422
           ++ EA G+  EMV+     +  +    +  +    +   A +  + M+E   S  + T +
Sbjct: 235 RMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYS 294

Query: 423 LLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKL 459
            L+ GLC+M  L EA   ++ M + G+    F  + L
Sbjct: 295 SLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTL 331



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 92/437 (21%), Positives = 178/437 (40%), Gaps = 66/437 (15%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMK-KENVLSLATFASVFSSYVVADRVKDAITTFDVM 161
           ++N++++ L +       W+ ++ M  K       T+ ++ + Y        A+     M
Sbjct: 82  SYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEM 141

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDV 220
            + G    V    +L++++C+      A +F   +  R ++P+  TY  L++G+ ++  +
Sbjct: 142 VRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLL 201

Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFF 280
             A +   EM  E G+ P +V  Y++++       + + E +  ++ M+E+G  P +  +
Sbjct: 202 NEAYRILNEMT-ESGFSP-SVVTYNAFIHGHCV-LERMEEALGVVQEMVEKGLAPDVVSY 258

Query: 281 KLAFEE-CLTGQNLRG-------------------AEFIWGAMVGR-------------- 306
                  C  G+  R                    +  I G    R              
Sbjct: 259 STIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLD 318

Query: 307 IGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWE 366
           +G  PD   Y  +I+ YC   +   A+ L DEM++ G  PD  TY++L   L K  +  E
Sbjct: 319 MGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQARTRE 378

Query: 367 ASGLFNEMVKNENVLNH-------ENCR--------AAVRVYMDSDDPYVAIKFWKYMIE 411
           A  L  +++  E+V +        ENC         A ++ +      + A + ++ M+E
Sbjct: 379 AKRLLFKLIYEESVPSDVTYDTLIENCSNIEFKSVVALIKGFCMKGLMHEADRVFESMVE 438

Query: 412 NHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKAR-KEA 470
            +        N+++ G C    LP+A    K M   G    P  ++ +   LIKA  KE 
Sbjct: 439 RNHKPGEAVYNVIIHGHCRGGNLPKAFNLYKEMIHSGF--VPHTVTVI--TLIKALFKEG 494

Query: 471 VYEEL-------LKKCK 480
           + EE+       L+ C+
Sbjct: 495 MNEEMSEVIGDTLRSCR 511



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 69/262 (26%), Positives = 105/262 (40%), Gaps = 18/262 (6%)

Query: 195 VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG 254
           ++  R+ P+  TY IL+ G+    ++      FGEM  E      NV  Y++ +    K 
Sbjct: 1   MIRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEM--ERNGCLPNVVTYNTLIDAYCK- 57

Query: 255 CDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTH 314
              I E    LK M  +G  P +  + +         +++ A  I   M G  GF PD  
Sbjct: 58  MGRIDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEM-GYKGFTPDEV 116

Query: 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
            YN +++ YC       A+ +  EMV NG  P + TY  L   + K R L  A   F++M
Sbjct: 117 TYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQM 176

Query: 375 VKNENVLNHENCRAAVRVYMDSDDPYV-------AIKFWKYMIENHCSDLSETGNLLVAG 427
                       R   R Y    D +        A +    M E+  S    T N  + G
Sbjct: 177 -------RIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHG 229

Query: 428 LCDMHMLPEAVKYAKGMAEKGI 449
            C +  + EA+   + M EKG+
Sbjct: 230 HCVLERMEEALGVVQEMVEKGL 251



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 71/332 (21%), Positives = 136/332 (40%), Gaps = 63/332 (18%)

Query: 84  AVKFF---RWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFA 139
           A++FF   R    + N++     +  ++D   +  L +  +  +  M +     S+ T+ 
Sbjct: 169 AMEFFDQMRIRGLRPNER----TYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYN 224

Query: 140 SVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDG 198
           +    + V +R+++A+     M + G   DV + ++++S  CR G+   A+Q  + +V+ 
Sbjct: 225 AFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEK 284

Query: 199 RIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDN---VPAYDSYLI------ 249
            + PD  TY+ L++G  + R +  A     EM +++G  PD        ++Y +      
Sbjct: 285 GVSPDAVTYSSLIQGLCEMRRLTEACDLSQEM-LDMGLPPDEFTYTTLINAYCVEGDLNK 343

Query: 250 -------TLLKGC--DGIYETV--NSLKRMMERGCNPGMTFFKLAFEE------------ 286
                   + KG   D +  +V  N L +   R        FKL +EE            
Sbjct: 344 ALHLHDEMIHKGFLPDAVTYSVLINGLNKQA-RTREAKRLLFKLIYEESVPSDVTYDTLI 402

Query: 287 ------------------CLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNE 328
                             C+ G  +  A+ ++ +MV R   +P   +YN++I  +C    
Sbjct: 403 ENCSNIEFKSVVALIKGFCMKGL-MHEADRVFESMVER-NHKPGEAVYNVIIHGHCRGGN 460

Query: 329 TGAAMKLLDEMVYNGAFPDIQTYNILFEFLVK 360
              A  L  EM+++G  P   T   L + L K
Sbjct: 461 LPKAFNLYKEMIHSGFVPHTVTVITLIKALFK 492


>gi|297837161|ref|XP_002886462.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297332303|gb|EFH62721.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 550

 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 88/367 (23%), Positives = 158/367 (43%), Gaps = 19/367 (5%)

Query: 117 FDAMWDAIKSMKKENVL--------------SLATFASVFSSYVVADRVKDAITTFDVME 162
           F+ +  AI  MKK +V+               L TF  V + +    +V  A++    M 
Sbjct: 88  FNRLLSAIVKMKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSVLGKML 147

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERDVA 221
           + G + D   + SL++  CR  +  DA   + ++V+   +PD   Y  +++   K R V 
Sbjct: 148 KLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYRPDIVAYNAIIDSLCKTRRVN 207

Query: 222 NAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFK 281
           +A   F E +   G  P NV  Y + L+  L       +    L+ M++R   P +  + 
Sbjct: 208 DALDFFKE-IGRKGIRP-NVVTYTA-LVNGLCNSGRWNDAARLLRDMIKRKITPNVITYS 264

Query: 282 LAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVY 341
              +  +    +  A+ I+  MV R+   PD   Y+ +I+  C  +    A ++ D MV 
Sbjct: 265 ALLDAFVKNGKVLEAKEIFEEMV-RMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVS 323

Query: 342 NGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYV 401
            G FPD+ +YN L     K +++ +   LF +M +   V N       ++ +    D   
Sbjct: 324 KGCFPDVVSYNTLINGFCKAKRVEDGMKLFRKMSQRGLVNNTVTYNTLIQGFFQVGDVDK 383

Query: 402 AIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQ 461
           A +F+  M     S    T N+L+ GLCD  +L +A+   + M +  + +     + + Q
Sbjct: 384 AQEFFSQMDSFGVSPDIWTYNILLGGLCDNGLLEKALVIFEDMQKSEMDLDIVTYTTVIQ 443

Query: 462 ILIKARK 468
            + K  K
Sbjct: 444 GMCKTGK 450



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 68/272 (25%), Positives = 114/272 (41%), Gaps = 38/272 (13%)

Query: 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR 194
           +  + ++  S     RV DA+  F  + + G + +V    +L++ +C  G+  DA + LR
Sbjct: 190 IVAYNAIIDSLCKTRRVNDALDFFKEIGRKGIRPNVVTYTALVNGLCNSGRWNDAARLLR 249

Query: 195 -VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLK 253
            ++  +I P+  TY+ LL+ + K   V  AK+ F EMV  +  DPD +  Y S LI  L 
Sbjct: 250 DMIKRKITPNVITYSALLDAFVKNGKVLEAKEIFEEMV-RMSIDPD-IVTYSS-LINGLC 306

Query: 254 GCDGIYETVNSLKRMMERGCNP--------------------GMTFFKLAFEECLTGQNL 293
             D I E       M+ +GC P                    GM  F+   +  L    +
Sbjct: 307 LHDRIDEANQMFDLMVSKGCFPDVVSYNTLINGFCKAKRVEDGMKLFRKMSQRGLVNNTV 366

Query: 294 RGAEFIWG--------------AMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEM 339
                I G              + +   G  PD   YN+++   C +     A+ + ++M
Sbjct: 367 TYNTLIQGFFQVGDVDKAQEFFSQMDSFGVSPDIWTYNILLGGLCDNGLLEKALVIFEDM 426

Query: 340 VYNGAFPDIQTYNILFEFLVKGRKLWEASGLF 371
             +    DI TY  + + + K  K+ +A GLF
Sbjct: 427 QKSEMDLDIVTYTTVIQGMCKTGKVEDAWGLF 458


>gi|255553139|ref|XP_002517612.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223543244|gb|EEF44776.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 794

 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 84/349 (24%), Positives = 154/349 (44%), Gaps = 17/349 (4%)

Query: 124 IKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRD 183
           IK  ++ +   L T+A++    +VA  V  A+T  + M + G   D    N L+S +C+ 
Sbjct: 371 IKMSERGHKPDLVTYAALIHGLIVAGEVDVALTVRNKMVEKGVLPDANIYNVLMSGLCKK 430

Query: 184 GKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVP 242
           G+   A   L  ++D  + PD    A L++G+ +  D   AKK F E+ IE G DP  V 
Sbjct: 431 GRLPAAKVLLAEMLDQNVAPDAFITATLVDGFIRHGDFEEAKKLF-ELTIEKGIDP-GVV 488

Query: 243 AYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGA 302
            Y++ +    K    + + +   KRM++   +P    +    +  +   +L GA  ++G 
Sbjct: 489 GYNAMIKGYCKF-GMMKDALLCFKRMIQGLHSPDEFTYSTIIDGYIKMNDLHGALRMFGL 547

Query: 303 MVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGR 362
           MV +   +P+   Y ++I+ +C S +   A K   +M+     P++ TY IL     KG 
Sbjct: 548 MV-KGACKPNVVTYTLLINGFCLSGDINRAEKTFKQMLSLRLKPNVVTYTILIGCFCKGV 606

Query: 363 KLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVA------------IKFWKYMI 410
            L +A   F +M+  + + N       +    ++ D  ++            ++ +  MI
Sbjct: 607 NLTKACSFFEQMLMEKCLPNDVTYNYLMNGLTNNVDFVISNQRSEQTENSLVLESFGMMI 666

Query: 411 ENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKL 459
            +     + + N ++  LC   M+  A+     M  KG    P +L  L
Sbjct: 667 SDGWDRRAASYNSILICLCQHKMVKHALHLRDKMMSKGFLPDPVSLVAL 715



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 97/429 (22%), Positives = 181/429 (42%), Gaps = 52/429 (12%)

Query: 81  PGPAVKFFRWSAYQLN--DKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL----S 134
           P   ++FF W++ Q N  +  + ++ + ++ LL +  LF  +   +K MK ++++    +
Sbjct: 44  PEMGLEFFHWASKQSNCGNYLNEFSCSSLLRLLARRRLFSEVESLLKIMKSKDLMPTREA 103

Query: 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLS---------------- 178
            +   SVF+   + DR  +   TF  ++ + C  DVF+ NSLL+                
Sbjct: 104 FSLVISVFADCGLVDRALEFYRTF--IKIHHCVPDVFSCNSLLNVLVKHGKVEIACKVYD 161

Query: 179 -------------------AICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKER 218
                               +C++GK  D W+ +    GR   P+   Y  L++G+ K+ 
Sbjct: 162 EMVDRNGEVDNYTVCIMVKGLCKEGKVEDGWKLIEKRWGRGCMPNIVFYNTLIDGYCKKG 221

Query: 219 DVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNS-LKRMMERGCNPGM 277
           D   A   F E+ ++ G+ P  V  Y + +    K   G +E V+  L  M ERG +  +
Sbjct: 222 DTERANVLFKELKMK-GFLP-TVKTYGAIINGFCK--KGKFEVVDKLLVEMSERGLDVSI 277

Query: 278 TFFKLAFEECLT-GQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLL 336
             +    +     G  +  A+ + G M+ + G  PD   YN++I+  C   E   A +LL
Sbjct: 278 HIYNNIIDAQFKHGCRIEAADTV-GWMI-KSGCDPDMATYNILITGSCSCGEVHKAEQLL 335

Query: 337 DEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDS 396
           ++ +  G  P+  +Y  L     K  +   A  L  +M +  +  +     A +   + +
Sbjct: 336 EQAIKRGLLPNKVSYTPLIHNYCKQGEYLRALDLLIKMSERGHKPDLVTYAALIHGLIVA 395

Query: 397 DDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFAL 456
            +  VA+     M+E      +   N+L++GLC    LP A      M ++ +    F  
Sbjct: 396 GEVDVALTVRNKMVEKGVLPDANIYNVLMSGLCKKGRLPAAKVLLAEMLDQNVAPDAFIT 455

Query: 457 SKLKQILIK 465
           + L    I+
Sbjct: 456 ATLVDGFIR 464


>gi|119638441|gb|ABL85032.1| auxin efflux carrier [Brachypodium sylvaticum]
          Length = 895

 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 89/378 (23%), Positives = 163/378 (43%), Gaps = 11/378 (2%)

Query: 105 NLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVMEQ 163
            L+ DLL  + + + +W     M+   +L  + T+++   ++  A     A   F+ M +
Sbjct: 213 GLLKDLLRADAM-ELLWKLKGFMEGAGILPDVYTYSTFIEAHCKARDFDAAKKVFEEMRR 271

Query: 164 YGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYAILLEGWEKERDVAN 222
             C  +    N ++S +CR G   +A+ F   +VD  + PD  TY  L+ G  K   +  
Sbjct: 272 RDCAMNEVTYNVMISGLCRSGAVEEAFGFKEEMVDYGLSPDAFTYGALMNGLCKGSRLKE 331

Query: 223 AKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDG-IYETVNSLKRMMERGCNPGMTFF- 280
           AK    EM    G  P N+  Y + +   +K  +G   E  + LK M+  G  P    + 
Sbjct: 332 AKALLDEMSCS-GLKP-NIVVYGTLVDGFMK--EGKTAEAFDILKEMISAGVQPNKIMYD 387

Query: 281 KLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMV 340
            L    C  GQ  R ++ +   +  ++G RPDT  YN ++  +   ++   A +LL+EM 
Sbjct: 388 NLIRGLCKIGQLGRASKLLKEMI--KVGLRPDTFTYNPLMQGHFQQHDKDGAFELLNEMR 445

Query: 341 YNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPY 400
            +G  P++ +Y I+   L +  +  EA  L  EM+      N       +  +    +  
Sbjct: 446 NSGILPNVYSYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIGHSKEGNIS 505

Query: 401 VAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLK 460
           +A +  + M + +        N L+ GL  +  + EA +Y   + ++G+    F  S L 
Sbjct: 506 LACEALEKMTKANVHPDLFCYNSLIKGLSTVGRMEEAEEYYAQVQKRGLVPDEFTYSGLI 565

Query: 461 QILIKARKEAVYEELLKK 478
               K       ++LL++
Sbjct: 566 HGYCKTGNLEKADQLLRQ 583



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 83/350 (23%), Positives = 149/350 (42%), Gaps = 8/350 (2%)

Query: 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLA-TFASVFSSYVVADRVKDAITTFDV 160
           Y++ ++++ L +N       + ++ M  E +   A  +A +   +     +  A    + 
Sbjct: 454 YSYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIGHSKEGNISLACEALEK 513

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERD 219
           M +     D+F  NSL+  +   G+  +A ++   V  R + PD  TY+ L+ G+ K  +
Sbjct: 514 MTKANVHPDLFCYNSLIKGLSTVGRMEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTGN 573

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNS-LKRMMERGCNPGMT 278
           +  A +   +M +  G  P N   Y   L    K  D  YE V+S L+ M+  G  P   
Sbjct: 574 LEKADQLLRQM-LNSGLKP-NADTYTDLLEGYFKSND--YEKVSSILQSMLGSGDKPDNH 629

Query: 279 FFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDE 338
            + +        +N+  A F+    V + G  PD H+Y+ +IS  C   +   A+ LLDE
Sbjct: 630 IYGIVIRNLSRSENMEVA-FMVLTEVEKNGLVPDLHIYSSLISGLCKIADMEKAVGLLDE 688

Query: 339 MVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDD 398
           M   G  P I  YN L +   +   +  A  +F+ ++    V N     A +     + D
Sbjct: 689 MAKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLVPNCVTYTALIDGNCKNGD 748

Query: 399 PYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448
              A   +K M++   +  +   N+L  G  D   L +A+   + M  +G
Sbjct: 749 ITDAFDLYKEMLDRGIAPDAFVYNVLATGCSDAADLEQALFLTEEMFNRG 798



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/238 (22%), Positives = 102/238 (42%), Gaps = 6/238 (2%)

Query: 138 FASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVV 196
           +  V  +   ++ ++ A      +E+ G   D+   +SL+S +C+      A   L  + 
Sbjct: 631 YGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKIADMEKAVGLLDEMA 690

Query: 197 DGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD 256
              ++P    Y  L++G+ +  D++ A+  F + ++  G  P N   Y + +    K  D
Sbjct: 691 KEGLEPGIVCYNALIDGFCRSGDISRARNVF-DSILAKGLVP-NCVTYTALIDGNCKNGD 748

Query: 257 GIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMY 316
            I +  +  K M++RG  P    + +    C    +L  A F+   M  R G+  +  ++
Sbjct: 749 -ITDAFDLYKEMLDRGIAPDAFVYNVLATGCSDAADLEQALFLTEEMFNR-GY-ANVSLF 805

Query: 317 NMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
           N ++  +C   +     KLL  M+     P+ QT   +     K  KL EA  +F E+
Sbjct: 806 NTLVHGFCKRGKLQETEKLLHVMMDREIVPNAQTVEKVVSEFGKAGKLGEAHRVFAEL 863



 Score = 40.4 bits (93), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 44/190 (23%), Positives = 71/190 (37%), Gaps = 2/190 (1%)

Query: 289 TGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDI 348
           TG     A+ +   M+  +G  P     N ++     ++      KL   M   G  PD+
Sbjct: 186 TGSVRNAAQVVL--MMADLGLAPTRRCCNGLLKDLLRADAMELLWKLKGFMEGAGILPDV 243

Query: 349 QTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKY 408
            TY+   E   K R    A  +F EM + +  +N       +     S     A  F + 
Sbjct: 244 YTYSTFIEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEEAFGFKEE 303

Query: 409 MIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARK 468
           M++   S  + T   L+ GLC    L EA      M+  G++        L    +K  K
Sbjct: 304 MVDYGLSPDAFTYGALMNGLCKGSRLKEAKALLDEMSCSGLKPNIVVYGTLVDGFMKEGK 363

Query: 469 EAVYEELLKK 478
            A   ++LK+
Sbjct: 364 TAEAFDILKE 373


>gi|359485848|ref|XP_002267947.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Vitis vinifera]
          Length = 1011

 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 75/317 (23%), Positives = 140/317 (44%), Gaps = 5/317 (1%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RV 195
            + ++ +++    RV+++    + M + G   DVF  NSL+   C+  +  +A  +L  +
Sbjct: 462 VYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEM 521

Query: 196 VDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
           ++ R++P+  TY   ++G+ K  ++  A + F EM +  G  P NV  Y + +    K  
Sbjct: 522 LERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEM-LSCGVLP-NVGIYTALIEGHCKEG 579

Query: 256 DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHM 315
           + + E  +  + ++ R     +  + +          +  A  I+  +  + G  P+   
Sbjct: 580 N-VTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEK-GLLPNAFT 637

Query: 316 YNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
           YN +IS  C       A +LL+EM   G  PDI TYNIL + L K  ++  A  LF+++ 
Sbjct: 638 YNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIE 697

Query: 376 KNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLP 435
                 N     A V  Y  S +P  A +  + M+       +   N+++   C      
Sbjct: 698 GRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFE 757

Query: 436 EAVKYAKGMAEKGIQVT 452
           +A+   + M EKG   T
Sbjct: 758 KALDLFQEMLEKGFAST 774



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 77/299 (25%), Positives = 128/299 (42%), Gaps = 17/299 (5%)

Query: 82  GPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFAS 140
           GP    FR S    N        +L+ DLL  N + +  W     M    VL  + T+ +
Sbjct: 170 GPKNFEFRPSLLSCN--------SLLGDLLKGNKV-ELFWKVFDGMCAHKVLPDVYTYTN 220

Query: 141 VFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGR 199
           + S++     VKDA      M + GC  ++   N ++  +CR     +A +  R +VD  
Sbjct: 221 MISAHCKVGNVKDAKRVLLEMGEKGCSPNLVTYNVIIGGLCRARLLDEAIELKRSMVDKG 280

Query: 200 IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIY 259
           + PD  TY IL+ G+  E+    AK    EM I+VG  P+ +  Y++ +   ++  D I 
Sbjct: 281 LVPDLYTYDILINGFCMEKRSREAKLMLLEM-IDVGLKPEPI-TYNALIDGFMRQGD-IE 337

Query: 260 ETVNSLKRMMERGCNPGMTFFKLAFEE-CLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNM 318
           +       M+  G    +  +       C  G+  +  E +   M    G  PD+  Y++
Sbjct: 338 QAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMM--EKGVEPDSQTYSL 395

Query: 319 MISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKN 377
           +I  +C       A +LLDEM      P + TY+++   L +   L   + +  EMV N
Sbjct: 396 LIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMN 454



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 65/275 (23%), Positives = 120/275 (43%), Gaps = 7/275 (2%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLA-TFASVFSSYVVADRVKDAITTFDVM 161
            +++++  L +N      +     ++++ +L  A T+ S+ S       V  A    + M
Sbjct: 602 TYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEM 661

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDV 220
              G   D+   N L+  +C+ G+   A      ++GR + P+  TYA +++G+ K ++ 
Sbjct: 662 CIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNP 721

Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFF 280
             A +   EM++  G  PD    Y+  L    K  +   + ++  + M+E+G    ++F 
Sbjct: 722 TAAFQLLEEMLLR-GVPPDAF-IYNVILNFCCKE-EKFEKALDLFQEMLEKGFASTVSFN 778

Query: 281 KLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMV 340
            L    C +G+ L+ A  +   M+ +  F P+   Y  +I   C +   G A +L  EM 
Sbjct: 779 TLIEGYCKSGK-LQEANHLLEEMIEK-QFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQ 836

Query: 341 YNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
                P  +TY  L         + E S LF EMV
Sbjct: 837 ERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMV 871



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 65/315 (20%), Positives = 120/315 (38%), Gaps = 18/315 (5%)

Query: 109 DLLGKNCLFDAMWDAIKSMKKENVL----------SLATFASVFSSYVVADRVKDAITTF 158
           D++  N L D +  A +  + +N+           +  T+A++   Y  +     A    
Sbjct: 669 DIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLL 728

Query: 159 DVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKER 218
           + M   G   D F  N +L+  C++ K   A    + +  +      ++  L+EG+ K  
Sbjct: 729 EEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFASTVSFNTLIEGYCKSG 788

Query: 219 DVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD-GIYETVNSL-KRMMERGCNPG 276
            +  A     EM+     +   +P + +Y   +   C  G+      L   M ER   P 
Sbjct: 789 KLQEANHLLEEMI-----EKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPT 843

Query: 277 MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLL 336
              +           N+     ++  MV + G  PD   Y +MI  YC       A KL 
Sbjct: 844 AKTYTSLLHGYHNIGNMSEVSALFEEMVAK-GIEPDKMTYYVMIDAYCREGNVMEACKLK 902

Query: 337 DEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDS 396
           DE++  G    +  Y+ L + L K  + +E   L NE+ ++   L    C    R +  +
Sbjct: 903 DEILVKGMPMSVAAYDALIQALCKKEEFFEVLKLLNEIGESGFRLGLPTCSVIARGFQIA 962

Query: 397 DDPYVAIKFWKYMIE 411
            +   A +  + M++
Sbjct: 963 GNMDEAAEVLRSMVK 977



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 98/486 (20%), Positives = 184/486 (37%), Gaps = 101/486 (20%)

Query: 13  PSPDPHNKRKRSTFASHLDVPNLPPTIKTLCEII------ANTPSPTVEDVLDKTLIRVS 66
           P P  H   K ++F+S   +     +++ +  ++      A   S  +   L+  +IR  
Sbjct: 4   PRPISH---KAASFSSSQALTQNEDSVREITTLLNSHNWQALMESSDIPKKLNTDIIR-- 58

Query: 67  QETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWN----LVVDLLGKNCLFDAMWD 122
                 +L+     P   + FF WS +++    +    +    L V+L   N  +    D
Sbjct: 59  ----SVILQNQVGDPKRLLNFFYWSQHKMGTSTAQQDLDVLSALAVNLCNSN-WYGPASD 113

Query: 123 AIKSMKKENVLSLATFASVFSSY---------VVADRVKD----------AITTFDVMEQ 163
            IK + + +   LA   S+   Y         V+ D + D          A+  F   + 
Sbjct: 114 LIKCIIRNSDSPLAVLGSIVKCYRSCNGSPNSVIFDMLMDSYRKMGFLVEAVNVFLGPKN 173

Query: 164 YGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDG----RIKPDNDTYAILLEGWEKERD 219
           +  +  + + NSLL  + +  K    W   +V DG    ++ PD  TY  ++    K  +
Sbjct: 174 FEFRPSLLSCNSLLGDLLKGNKVELFW---KVFDGMCAHKVLPDVYTYTNMISAHCKVGN 230

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTF 279
           V +AK+   EM                                       E+GC+P +  
Sbjct: 231 VKDAKRVLLEM--------------------------------------GEKGCSPNLVT 252

Query: 280 FKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEM 339
           + +        + L  A  +  +MV + G  PD + Y+++I+ +C    +  A  +L EM
Sbjct: 253 YNVIIGGLCRARLLDEAIELKRSMVDK-GLVPDLYTYDILINGFCMEKRSREAKLMLLEM 311

Query: 340 VYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNE--------NVLNHENCRAAVR 391
           +  G  P+  TYN L +  ++   + +A  + +EMV           N L +  C+A   
Sbjct: 312 IDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAG-- 369

Query: 392 VYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQV 451
             M+      A++  + M+E      S+T +LL+ G C    +  A +    M ++ +  
Sbjct: 370 -KMEK-----ALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAP 423

Query: 452 TPFALS 457
           T    S
Sbjct: 424 TVLTYS 429


>gi|388521091|gb|AFK48607.1| unknown [Medicago truncatula]
          Length = 506

 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 75/273 (27%), Positives = 124/273 (45%), Gaps = 41/273 (15%)

Query: 104 WNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVME 162
           +N V+D + K+   +  +D    M  + +   + T++++   + +  ++KDAI  F+ M 
Sbjct: 211 YNTVIDGMSKDKHVNDAFDLYSEMVAKRISPDVVTYSALIRGFFIVGKLKDAIDLFNKMI 270

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVA 221
               K DV+  N L+   C++G+   A   L ++  + IKP+  T+  L++G+ K+R + 
Sbjct: 271 LENIKPDVYTFNILVDGFCKEGRLKKAKNVLDMMMIQDIKPNVSTFNTLVDGFCKDRKMK 330

Query: 222 NAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFK 281
             K  F  M+++ G  P NV  Y S +       DG                        
Sbjct: 331 EGKTVFA-MMMKQGIKP-NVVTYCSLM-------DG------------------------ 357

Query: 282 LAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVY 341
                CL  Q +  A+ I+  M  R G   + H YN+MI+ +C   +   AMKL  EM +
Sbjct: 358 ----YCLVKQ-VNKAKKIFNTMSQR-GVTANVHSYNIMINGFCKIKKVDKAMKLFIEMHH 411

Query: 342 NGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
               PD+ TYN L + L K  K+  A  L NEM
Sbjct: 412 KHIIPDVVTYNSLIDGLCKSGKISYAFQLVNEM 444



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 74/341 (21%), Positives = 141/341 (41%), Gaps = 57/341 (16%)

Query: 117 FDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSL 176
           F  +   +K   + ++++L TF      + +  ++  A+   D +   G   D  +  +L
Sbjct: 123 FSVLAKILKMGYEPDIITLNTF---IKGFCLKGQIHQALNFHDKLVALGFHLDQVSYGTL 179

Query: 177 LSAICRDGKTIDAWQFLRVVDGRIKPDNDT-YAILLEGWEKERDVANAKKTFGEMVIEVG 235
           ++ +C+ G+T  A Q LR VDG++   N   Y  +++G  K++ V +A   + EMV +  
Sbjct: 180 INGLCKVGETRAALQLLRRVDGKLVQLNAVMYNTVIDGMSKDKHVNDAFDLYSEMVAK-R 238

Query: 236 WDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRG 295
             PD V  Y +    L++G    +  V  LK  ++        F K+  E          
Sbjct: 239 ISPD-VVTYSA----LIRG----FFIVGKLKDAID-------LFNKMILEN--------- 273

Query: 296 AEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILF 355
                         +PD + +N+++  +C       A  +LD M+     P++ T+N L 
Sbjct: 274 -------------IKPDVYTFNILVDGFCKEGRLKKAKNVLDMMMIQDIKPNVSTFNTLV 320

Query: 356 EFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAI-------KFWKY 408
           +   K RK+ E   +F  M+K       +  +  V  Y    D Y  +       K +  
Sbjct: 321 DGFCKDRKMKEGKTVFAMMMK-------QGIKPNVVTYCSLMDGYCLVKQVNKAKKIFNT 373

Query: 409 MIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
           M +   +    + N+++ G C +  + +A+K    M  K I
Sbjct: 374 MSQRGVTANVHSYNIMINGFCKIKKVDKAMKLFIEMHHKHI 414


>gi|449460383|ref|XP_004147925.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like [Cucumis sativus]
 gi|449516585|ref|XP_004165327.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like [Cucumis sativus]
          Length = 701

 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 101/439 (23%), Positives = 175/439 (39%), Gaps = 43/439 (9%)

Query: 65  VSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAI 124
           +S   V ++LK +  +P  A+  F  +       H P+ ++ ++  L    L   +   +
Sbjct: 8   ISPTLVLKLLK-AEKNPNAALAIFDSACQHPGYAHPPFVFHHILRRLMDPKLVVHVGRIV 66

Query: 125 KSMKKENVLSLATFA-SVFSSYVVADRVKDAITTF-DVMEQYGCKHDVFALNSLLSAICR 182
             M+ +        A S   +Y        A+  F ++++ +GC   + + NS+L+A   
Sbjct: 67  DLMRAQRCTCSEDVALSAIKAYAKCSMPDQALNLFQNMVDIFGCNPGIRSFNSMLNAFIE 126

Query: 183 DGKTIDAWQFLRVVD-GRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNV 241
             +  +A  F        + P+  TY IL++   K+R     K     M  E G +PD +
Sbjct: 127 SNQWREAELFFTYFQTAGMSPNLQTYNILIKISCKKRQFEKGKGLLTWM-FENGLNPD-I 184

Query: 242 PAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWG 301
            +Y + LI  L     + + V     M  RG NP +  + +  +  L   +   A  IW 
Sbjct: 185 LSYGT-LINALAKSGNLLDAVELFDEMSVRGVNPDVMCYNILIDGFLRKGDFVKANEIWK 243

Query: 302 AMVGRIGFRPDTHMYNMMISLYCY---------------SNETG---------------- 330
            ++      P    YN+MI+  C                 NE                  
Sbjct: 244 RLLTESSVYPSVETYNIMINGLCKLGKLDESMEMWNRMKKNEKSPDLFTFSSMIHGLSKA 303

Query: 331 ----AAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENC 386
               AA K+  EM+ +G  PD++TYN +   L +  KL +   L+N M KN N  N  + 
Sbjct: 304 GNFNAAEKVFQEMIESGLSPDVRTYNAMLSGLFRTGKLNKCFELWNVMSKN-NCCNIVSY 362

Query: 387 RAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAE 446
              ++  +D+     AI +W+ + E      S T  LL+ GLC    L +A++  +    
Sbjct: 363 NMLIQGLLDNKKVEQAICYWQLLHERGLKADSTTYGLLINGLCKNGYLNKALRILEEAEN 422

Query: 447 KGIQVTPFALSKLKQILIK 465
           +G  +  FA S +   L K
Sbjct: 423 EGADLDTFAYSSMVHGLCK 441



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 85/382 (22%), Positives = 150/382 (39%), Gaps = 42/382 (10%)

Query: 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDA---WQ 191
           + ++ ++ ++   +  + DA+  FD M   G   DV   N L+    R G  + A   W+
Sbjct: 184 ILSYGTLINALAKSGNLLDAVELFDEMSVRGVNPDVMCYNILIDGFLRKGDFVKANEIWK 243

Query: 192 FLR--------------VVDGRIK--------------------PDNDTYAILLEGWEKE 217
            L               +++G  K                    PD  T++ ++ G  K 
Sbjct: 244 RLLTESSVYPSVETYNIMINGLCKLGKLDESMEMWNRMKKNEKSPDLFTFSSMIHGLSKA 303

Query: 218 RDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGM 277
            +   A+K F EM IE G  PD V  Y++ L  L +   G       L  +M +     +
Sbjct: 304 GNFNAAEKVFQEM-IESGLSPD-VRTYNAMLSGLFR--TGKLNKCFELWNVMSKNNCCNI 359

Query: 278 TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLD 337
             + +  +  L  + +  A   W  +  R G + D+  Y ++I+  C +     A+++L+
Sbjct: 360 VSYNMLIQGLLDNKKVEQAICYWQLLHER-GLKADSTTYGLLINGLCKNGYLNKALRILE 418

Query: 338 EMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSD 397
           E    GA  D   Y+ +   L K   L +A  L ++M KN   LN     + +  Y+ + 
Sbjct: 419 EAENEGADLDTFAYSSMVHGLCKKGMLEQAVELIHQMKKNRRKLNSHVFNSLINGYVRAF 478

Query: 398 DPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALS 457
               AI   + M    C+    + N ++ GLC      +A    K M E+G++      S
Sbjct: 479 KLEEAISVLREMKSKDCAPTVVSYNTIINGLCKAERFSDAYLSLKEMLEEGLKPDMITYS 538

Query: 458 KLKQILIKARKEAVYEELLKKC 479
            L   L +  K  +   L  +C
Sbjct: 539 LLIDGLCRGEKVDMALNLWHQC 560



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 61/267 (22%), Positives = 119/267 (44%), Gaps = 6/267 (2%)

Query: 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKK-ENVLSLATFASVFSSYVVADRVKDAITTFDV 160
           +A++ +V  L K  + +   + I  MKK    L+   F S+ + YV A ++++AI+    
Sbjct: 430 FAYSSMVHGLCKKGMLEQAVELIHQMKKNRRKLNSHVFNSLINGYVRAFKLEEAISVLRE 489

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYAILLEGWEKERD 219
           M+   C   V + N++++ +C+  +  DA+  L+ +++  +KPD  TY++L++G  +   
Sbjct: 490 MKSKDCAPTVVSYNTIINGLCKAERFSDAYLSLKEMLEEGLKPDMITYSLLIDGLCRGEK 549

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTF 279
           V  A   + +  I     PD      + +I  L     +   +    +M +  C P +  
Sbjct: 550 VDMALNLWHQ-CINKRLKPD--LQMHNIIIHGLCTAQKVDVALEIFTQMRQVNCVPDLVT 606

Query: 280 FKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEM 339
                E      +   A  IW  ++   G +PD   YN+     C       A++ L + 
Sbjct: 607 HNTIMEGLYKAGDCVEALKIWDRIL-EAGLQPDIISYNITFKGLCSCARVSDAIEFLYDA 665

Query: 340 VYNGAFPDIQTYNILFEFLVKGRKLWE 366
           +  G  P+  T+N+L   +V  + L E
Sbjct: 666 LDRGILPNAPTWNVLVRAVVDDKPLME 692



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 63/317 (19%), Positives = 122/317 (38%), Gaps = 44/317 (13%)

Query: 136 ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-R 194
            T+  + +       +  A+   +  E  G   D FA +S++  +C+ G    A + + +
Sbjct: 395 TTYGLLINGLCKNGYLNKALRILEEAENEGADLDTFAYSSMVHGLCKKGMLEQAVELIHQ 454

Query: 195 VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSY--LITLL 252
           +   R K ++  +  L+ G+ +   +  A     EM        D  P   SY  +I  L
Sbjct: 455 MKKNRRKLNSHVFNSLINGYVRAFKLEEAISVLREMK-----SKDCAPTVVSYNTIINGL 509

Query: 253 KGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD 312
              +   +   SLK M+E G  P M  + L  +    G+ +  A  +W   + +   +PD
Sbjct: 510 CKAERFSDAYLSLKEMLEEGLKPDMITYSLLIDGLCRGEKVDMALNLWHQCINK-RLKPD 568

Query: 313 THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFN 372
             M+N++I   C + +   A+++  +M      PD+ T+N + E L K            
Sbjct: 569 LQMHNIIIHGLCTAQKVDVALEIFTQMRQVNCVPDLVTHNTIMEGLYK------------ 616

Query: 373 EMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMH 432
                                  + D   A+K W  ++E        + N+   GLC   
Sbjct: 617 -----------------------AGDCVEALKIWDRILEAGLQPDIISYNITFKGLCSCA 653

Query: 433 MLPEAVKYAKGMAEKGI 449
            + +A+++     ++GI
Sbjct: 654 RVSDAIEFLYDALDRGI 670



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 83/377 (22%), Positives = 139/377 (36%), Gaps = 63/377 (16%)

Query: 120 MWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSA 179
           MW+ +K  K E    L TF+S+      A     A   F  M + G   DV   N++LS 
Sbjct: 277 MWNRMK--KNEKSPDLFTFSSMIHGLSKAGNFNAAEKVFQEMIESGLSPDVRTYNAMLSG 334

Query: 180 ICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPD 239
           + R GK    ++   V+      +  +Y +L++G    + V  A   + +++ E G   D
Sbjct: 335 LFRTGKLNKCFELWNVMSKNNCCNIVSYNMLIQGLLDNKKVEQAI-CYWQLLHERGLKAD 393

Query: 240 NVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEE-----CLTGQNLR 294
           +     +Y + +   C   Y  +N   R++E   N G      A+       C  G   +
Sbjct: 394 ST----TYGLLINGLCKNGY--LNKALRILEEAENEGADLDTFAYSSMVHGLCKKGMLEQ 447

Query: 295 GAEFIWGAMVGRIGFR---------------------------------PDTHMYNMMIS 321
             E I      R                                     P    YN +I+
Sbjct: 448 AVELIHQMKKNRRKLNSHVFNSLINGYVRAFKLEEAISVLREMKSKDCAPTVVSYNTIIN 507

Query: 322 LYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNE--- 378
             C +     A   L EM+  G  PD+ TY++L + L +G K+  A  L+++ +      
Sbjct: 508 GLCKAERFSDAYLSLKEMLEEGLKPDMITYSLLIDGLCRGEKVDMALNLWHQCINKRLKP 567

Query: 379 -----NVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHM 433
                N++ H  C A            VA++ +  M + +C     T N ++ GL     
Sbjct: 568 DLQMHNIIIHGLCTA--------QKVDVALEIFTQMRQVNCVPDLVTHNTIMEGLYKAGD 619

Query: 434 LPEAVKYAKGMAEKGIQ 450
             EA+K    + E G+Q
Sbjct: 620 CVEALKIWDRILEAGLQ 636


>gi|449438705|ref|XP_004137128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Cucumis sativus]
          Length = 628

 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 110/458 (24%), Positives = 189/458 (41%), Gaps = 90/458 (19%)

Query: 102 YAWNLVVDLLGKNCL----FDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAIT 156
           +  ++V D L K+C      D  ++   +MK++ VL ++ T  S+ S ++  +R + A  
Sbjct: 148 FKSSIVFDYLIKSCCDMNRADEAFECFYTMKEKGVLPTIETCNSLLSLFLKLNRTEAAWV 207

Query: 157 TFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL----------------RVVDG-- 198
            +  M +   K  V+  N +++ +C++GK   A  F+                 +V G  
Sbjct: 208 LYAEMFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYC 267

Query: 199 ------------------RIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDN 240
                             +I+PD+ TY  L+ G  K+  +  A K F EMV + G  P  
Sbjct: 268 SSGRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMV-QKGLRPSA 326

Query: 241 VPAYDSYLITLLKG-CD-GIYETVNSLK-RMMERGCNPGMTFFKLAFEECLTGQNLRGAE 297
           V  Y+    TL+ G C+ G  +  ++ K  M+++G +P M+ +          Q    AE
Sbjct: 327 V-IYN----TLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAE 381

Query: 298 FIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEF 357
            +   +  + G  PD   YN++I+ YC       A  L DEM+ +G  P  +TY  L   
Sbjct: 382 CMIKEIQEK-GISPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHV 440

Query: 358 LVKGRKLWEASGLFNEMVKNENVL--------------NHENCRAAVRVYMDSDD---PY 400
           L K  ++ EA  LF + + +E VL              ++ N + A  +  D D    P 
Sbjct: 441 LSKKNRMKEADDLFKK-ITSEGVLPDVIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPP 499

Query: 401 VAIKFWKYMIENHC------------SDLSETG--------NLLVAGLCDMHMLPEAVKY 440
             + F   M + HC             ++   G        N L++G      + +A + 
Sbjct: 500 DEVTFNTIM-QGHCREGKVEEARELFDEMKRRGIKPDHISFNTLISGYSRRGDIKDAFRV 558

Query: 441 AKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKK 478
              M + G   T    + L Q L K ++  + EELLK+
Sbjct: 559 RNEMLDTGFNPTVLTYNALVQGLCKNQEGDLAEELLKE 596



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 89/395 (22%), Positives = 163/395 (41%), Gaps = 43/395 (10%)

Query: 93  YQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRV 151
           ++L  K S Y +N+++++L K        D +  M+   V  ++ T+ ++   Y  + RV
Sbjct: 213 FRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSGRV 272

Query: 152 KDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAIL 210
           + A      M++   + D F   SL+S +C+ G+  +A + F  +V   ++P    Y  L
Sbjct: 273 EAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTL 332

Query: 211 LEGW--EKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRM 268
           ++G+  +   D+A+A K   + +++ G  P  +  Y+S LI  L       E    +K +
Sbjct: 333 IDGFCNKGNLDMASAYK---DEMLKKGISP-TMSTYNS-LIHALFMEQRTDEAECMIKEI 387

Query: 269 MERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVG---------------------RI 307
            E+G +P    + +         N + A  +   M+                      R+
Sbjct: 388 QEKGISPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRM 447

Query: 308 -------------GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNIL 354
                        G  PD  M+N +I  +C ++    A +LL +M      PD  T+N +
Sbjct: 448 KEADDLFKKITSEGVLPDVIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTI 507

Query: 355 FEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHC 414
            +   +  K+ EA  LF+EM +     +H +    +  Y    D   A +    M++   
Sbjct: 508 MQGHCREGKVEEARELFDEMKRRGIKPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGF 567

Query: 415 SDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
           +    T N LV GLC       A +  K M  KG+
Sbjct: 568 NPTVLTYNALVQGLCKNQEGDLAEELLKEMVSKGM 602



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 87/374 (23%), Positives = 147/374 (39%), Gaps = 32/374 (8%)

Query: 21  RKRSTFASHLDVPNLPPTIKTLCEIIANTPSPTVEDVLDKTLIRVSQETVEQVLKFSY-- 78
           +K   F  H++   + P I T   I+    S    +  D  L  + ++ +E    F+Y  
Sbjct: 238 KKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTMKRQKIEPD-SFTYGS 296

Query: 79  --------SHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKS--MK 128
                        A K F     Q   + S   +N ++D        D M  A K   +K
Sbjct: 297 LISGMCKQGRLEEASKIFE-EMVQKGLRPSAVIYNTLIDGFCNKGNLD-MASAYKDEMLK 354

Query: 129 KENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTID 188
           K    +++T+ S+  +  +  R  +A      +++ G   D    N L++  CR      
Sbjct: 355 KGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCRCANAKK 414

Query: 189 AWQFL-RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSY 247
           A+     ++   IKP   TY  LL    K+  +  A   F ++  E G  PD +      
Sbjct: 415 AFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSE-GVLPDVI-----M 468

Query: 248 LITLLKG------CDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWG 301
              L+ G        G +E +  + RM  +     +TF  +    C  G+ +  A  ++ 
Sbjct: 469 FNALIDGHCSNSNVKGAFELLKDMDRM--KVPPDEVTFNTIMQGHCREGK-VEEARELFD 525

Query: 302 AMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKG 361
            M  R G +PD   +N +IS Y    +   A ++ +EM+  G  P + TYN L + L K 
Sbjct: 526 EMKRR-GIKPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNALVQGLCKN 584

Query: 362 RKLWEASGLFNEMV 375
           ++   A  L  EMV
Sbjct: 585 QEGDLAEELLKEMV 598



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 97/248 (39%), Gaps = 55/248 (22%)

Query: 118 DAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLL 177
           + +   IK  KK       T+ S+       +R+K+A   F  +   G   DV   N+L+
Sbjct: 421 EMLASGIKPTKK-------TYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDVIMFNALI 473

Query: 178 SAICRDGKTIDAWQFLRVVDG-RIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGW 236
              C +     A++ L+ +D  ++ PD  T+  +++G  +E  V  A++ F EM      
Sbjct: 474 DGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEM------ 527

Query: 237 DPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRG- 295
                                        KR   RG  P      ++F   ++G + RG 
Sbjct: 528 -----------------------------KR---RGIKPD----HISFNTLISGYSRRGD 551

Query: 296 ---AEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYN 352
              A  +   M+   GF P    YN ++   C + E   A +LL EMV  G  PD  TY 
Sbjct: 552 IKDAFRVRNEMLD-TGFNPTVLTYNALVQGLCKNQEGDLAEELLKEMVSKGMTPDDTTYF 610

Query: 353 ILFEFLVK 360
            L E + K
Sbjct: 611 TLIEGIAK 618


>gi|326490553|dbj|BAJ84940.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 856

 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 82/328 (25%), Positives = 145/328 (44%), Gaps = 10/328 (3%)

Query: 51  SPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDL 110
            P  E VLD    ++      QVLK  + H   A+ FF W   Q   KH  + +  ++ +
Sbjct: 314 GPMTEHVLDGLRCKIDAFQANQVLKLLHDH-NIALGFFHWLKRQPGFKHDGHTYTTMIGI 372

Query: 111 LGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHD 169
           LG+   F  M   +  M   N   ++ T+  +  +Y  A+ +++A+  F+ ME  G + D
Sbjct: 373 LGQAKQFGTMRKLLDEMSSVNCKPTVVTYNRIIHAYGRANYLREAVKVFEEMEGAGYQPD 432

Query: 170 VFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFG 228
                +L+    + G    A   + R+ +  + PD  TY+ ++    K   +A A K F 
Sbjct: 433 RVTYCTLIDIHAKSGYLEVAMDLYGRMQEVGLSPDTFTYSAMVNCLGKGGQLAAAYKLFC 492

Query: 229 EMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMME-RGCNPGMTFFKLAFEEC 287
           EM I+ G  P N+  Y+  +I  L+     Y+ V  L R M+  G  P    + +  E  
Sbjct: 493 EM-IDNGCTP-NLVTYN--IIIALQAKARNYDNVVKLYRDMQIAGFRPDKITYSIVMEVL 548

Query: 288 LTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPD 347
               +L  AE ++  M  R  + PD  +Y +++ L+  +     A+     M+ +G  P+
Sbjct: 549 GHCGHLDEAEAVFLEM--RRDWAPDEPVYGLLVDLWGKAGNVDKALGWYHAMLQDGLQPN 606

Query: 348 IQTYNILFEFLVKGRKLWEASGLFNEMV 375
           + T N L    +K  +  +A G+   M+
Sbjct: 607 VPTCNSLLSAFLKLNRFQDAYGVLQNML 634



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 60/246 (24%), Positives = 99/246 (40%), Gaps = 5/246 (2%)

Query: 129 KENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTID 188
           + N+ SL +  +V   Y    ++K    T  V++   CK D F  N +L  +      + 
Sbjct: 289 QSNLRSLKSLRAVEQYYHTLQQMKWGPMTEHVLDGLRCKIDAFQANQVLKLLHDHNIALG 348

Query: 189 AWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYL 248
            + +L+   G  K D  TY  ++    + +     +K   EM   V   P  V  Y+  +
Sbjct: 349 FFHWLKRQPG-FKHDGHTYTTMIGILGQAKQFGTMRKLLDEMS-SVNCKP-TVVTYNR-I 404

Query: 249 ITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIG 308
           I      + + E V   + M   G  P    +    +       L  A  ++G M   +G
Sbjct: 405 IHAYGRANYLREAVKVFEEMEGAGYQPDRVTYCTLIDIHAKSGYLEVAMDLYGRMQ-EVG 463

Query: 309 FRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEAS 368
             PDT  Y+ M++      +  AA KL  EM+ NG  P++ TYNI+     K R      
Sbjct: 464 LSPDTFTYSAMVNCLGKGGQLAAAYKLFCEMIDNGCTPNLVTYNIIIALQAKARNYDNVV 523

Query: 369 GLFNEM 374
            L+ +M
Sbjct: 524 KLYRDM 529


>gi|359487666|ref|XP_002277942.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Vitis vinifera]
          Length = 609

 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 100/397 (25%), Positives = 169/397 (42%), Gaps = 46/397 (11%)

Query: 88  FRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVV 147
           FR SA   N    P   +LV +  G+  + ++++  +  +++   +++ TF  V +    
Sbjct: 190 FRLSALSCN----PMLVSLVKE--GRIGVVESVYKEM--IRRRIGVNVVTFDVVINGLCK 241

Query: 148 ADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGRIKPDNDT 206
             + + A    + M+ +G    V   N+++   C+ GK   A   L+ +V  RI P+  T
Sbjct: 242 VGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEIT 301

Query: 207 YAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITL-----LKGCDGIYE- 260
           + IL++G+ ++ +V  AKK F EM  + G  P NV  Y+S +  L     L    G+ + 
Sbjct: 302 FNILIDGFCRDENVTAAKKVFEEMQRQ-GLQP-NVVTYNSLINGLCSNGKLDEALGLQDK 359

Query: 261 -----------TVNSL------KRMME-----------RGCNPGMTFFKLAFEECLTGQN 292
                      T N+L      K+M++           RG  P +  F    +       
Sbjct: 360 MSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGR 419

Query: 293 LRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYN 352
           +  A F+  +M+   G  P+   YN +I  +C       A KL  EM  NG   D+ TYN
Sbjct: 420 MDDA-FLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYN 478

Query: 353 ILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIEN 412
           IL + L K  +  +A  L +EM +     +H    A +  Y    +   A+     M + 
Sbjct: 479 ILVDALCKKGETRKAVRLLDEMFEVGLNPSHLTYNALIDGYFREGNSTAALNVRTLMEKK 538

Query: 413 HCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
                  T N+L+ G C+   L EA +    M EKG+
Sbjct: 539 GRRANIVTYNVLIKGFCNKGKLEEANRLLNEMLEKGL 575



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 97/467 (20%), Positives = 192/467 (41%), Gaps = 43/467 (9%)

Query: 13  PSPDPHNKRKRSTFASHLDVPNLPPT----IKTLCEIIANTPSPTVEDVLDKTLIRVSQE 68
           PS DP     ++ F+S       P +      T+ ++IA      ++ ++ +T    +  
Sbjct: 19  PSLDPKLNNTKTPFSSPNSTYTTPNSHTFDTPTISQLIAKQHWSKLKTIVKET----NPS 74

Query: 69  TVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMK 128
           ++ Q L  S + P   + +F+W+  +    H+   +  ++ LL     ++ +   + S  
Sbjct: 75  SLLQHLFNSEAQPDLILCYFKWTQKEFGAIHNVEQFCRLLHLLANAKNYNKIRALLDSFA 134

Query: 129 KENVLSLATF---ASVFSSYVVADR----------VKD-----AITTFDVMEQYGCKHDV 170
           K    S +T     SV  S+  A+           VK+     A+  FD    YG +   
Sbjct: 135 KNAHYSNSTIFHSLSVLGSWGCANSIIVDMLVWAYVKNGEMDLALEGFDRAGDYGFRLSA 194

Query: 171 FALNSLLSAICRDGKT-IDAWQFLRVVDGRIKPDNDTYAILLEG------WEKERDVANA 223
            + N +L ++ ++G+  +    +  ++  RI  +  T+ +++ G      ++K  DV   
Sbjct: 195 LSCNPMLVSLVKEGRIGVVESVYKEMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVED 254

Query: 224 KKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLA 283
            K +       G+ P +V  Y++ +    K    +++    LK M+ +  +P    F + 
Sbjct: 255 MKAW-------GFSP-SVITYNTIIDGYCKA-GKMFKADALLKEMVAKRIHPNEITFNIL 305

Query: 284 FEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNG 343
            +     +N+  A+ ++  M  R G +P+   YN +I+  C + +   A+ L D+M   G
Sbjct: 306 IDGFCRDENVTAAKKVFEEM-QRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMG 364

Query: 344 AFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAI 403
             P++ TYN L     K + L EA  + +++ K     N       +  Y  +     A 
Sbjct: 365 LKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAF 424

Query: 404 KFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQ 450
                M++        T N L+ G C    + EA K AK M   G++
Sbjct: 425 LLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLK 471



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 69/266 (25%), Positives = 121/266 (45%), Gaps = 15/266 (5%)

Query: 103 AWNLVVDLLGKNCLFD---AMWDAIKSMK-KENVLSLATFASVFSSYVVADRVKDAITTF 158
            +N +++ L  N   D    + D +  M  K NV+   T+ ++ + +     +K+A    
Sbjct: 336 TYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVV---TYNALINGFCKKKMLKEAREML 392

Query: 159 DVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR--VVDGRIKPDNDTYAILLEGWEK 216
           D + + G   +V   N+L+ A  + G+  DA+  LR  ++D  + P+  TY  L+ G+ +
Sbjct: 393 DDIGKRGLAPNVITFNTLIDAYGKAGRMDDAF-LLRSMMLDTGVCPNVSTYNCLIVGFCR 451

Query: 217 ERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPG 276
           E +V  A+K   EM  E      ++  Y+  +  L K  +   + V  L  M E G NP 
Sbjct: 452 EGNVKEARKLAKEM--EGNGLKADLVTYNILVDALCKKGE-TRKAVRLLDEMFEVGLNPS 508

Query: 277 MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLL 336
              +    +      N   A  +   M  + G R +   YN++I  +C   +   A +LL
Sbjct: 509 HLTYNALIDGYFREGNSTAALNVRTLMEKK-GRRANIVTYNVLIKGFCNKGKLEEANRLL 567

Query: 337 DEMVYNGAFPDIQTYNILF-EFLVKG 361
           +EM+  G  P+  TY+IL  E + KG
Sbjct: 568 NEMLEKGLIPNRTTYDILRDEMMEKG 593


>gi|449523421|ref|XP_004168722.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Cucumis sativus]
          Length = 628

 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 110/458 (24%), Positives = 189/458 (41%), Gaps = 90/458 (19%)

Query: 102 YAWNLVVDLLGKNCL----FDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAIT 156
           +  ++V D L K+C      D  ++   +MK++ VL ++ T  S+ S ++  +R + A  
Sbjct: 148 FKSSIVFDYLIKSCCDMNRADEAFECFYTMKEKGVLPTIETCNSLLSLFLKLNRTEAAWV 207

Query: 157 TFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL----------------RVVDG-- 198
            +  M +   K  V+  N +++ +C++GK   A  F+                 +V G  
Sbjct: 208 LYAEMFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYC 267

Query: 199 ------------------RIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDN 240
                             +I+PD+ TY  L+ G  K+  +  A K F EMV + G  P  
Sbjct: 268 SSGRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMV-QKGLRPSA 326

Query: 241 VPAYDSYLITLLKG-CD-GIYETVNSLK-RMMERGCNPGMTFFKLAFEECLTGQNLRGAE 297
           V  Y+    TL+ G C+ G  +  ++ K  M+++G +P M+ +          Q    AE
Sbjct: 327 V-IYN----TLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAE 381

Query: 298 FIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEF 357
            +   +  + G  PD   YN++I+ YC       A  L DEM+ +G  P  +TY  L   
Sbjct: 382 CMIKEIQEK-GISPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHV 440

Query: 358 LVKGRKLWEASGLFNEMVKNENVL--------------NHENCRAAVRVYMDSDD---PY 400
           L K  ++ EA  LF + + +E VL              ++ N + A  +  D D    P 
Sbjct: 441 LSKKNRMKEADDLFKK-ITSEGVLPDAIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPP 499

Query: 401 VAIKFWKYMIENHC------------SDLSETG--------NLLVAGLCDMHMLPEAVKY 440
             + F   M + HC             ++   G        N L++G      + +A + 
Sbjct: 500 DEVTFNTIM-QGHCREGKVEEARELFDEMKRRGIKPDHISFNTLISGYSRRGDIKDAFRV 558

Query: 441 AKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKK 478
              M + G   T    + L Q L K ++  + EELLK+
Sbjct: 559 RNEMLDTGFNPTVLTYNALVQGLCKNQEGDLAEELLKE 596



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 89/395 (22%), Positives = 163/395 (41%), Gaps = 43/395 (10%)

Query: 93  YQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRV 151
           ++L  K S Y +N+++++L K        D +  M+   V  ++ T+ ++   Y  + RV
Sbjct: 213 FRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSGRV 272

Query: 152 KDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAIL 210
           + A      M++   + D F   SL+S +C+ G+  +A + F  +V   ++P    Y  L
Sbjct: 273 EAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTL 332

Query: 211 LEGW--EKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRM 268
           ++G+  +   D+A+A K   + +++ G  P  +  Y+S LI  L       E    +K +
Sbjct: 333 IDGFCNKGNLDMASAYK---DEMLKKGISP-TMSTYNS-LIHALFMEQRTDEAECMIKEI 387

Query: 269 MERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVG---------------------RI 307
            E+G +P    + +         N + A  +   M+                      R+
Sbjct: 388 QEKGISPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRM 447

Query: 308 -------------GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNIL 354
                        G  PD  M+N +I  +C ++    A +LL +M      PD  T+N +
Sbjct: 448 KEADDLFKKITSEGVLPDAIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTI 507

Query: 355 FEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHC 414
            +   +  K+ EA  LF+EM +     +H +    +  Y    D   A +    M++   
Sbjct: 508 MQGHCREGKVEEARELFDEMKRRGIKPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGF 567

Query: 415 SDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
           +    T N LV GLC       A +  K M  KG+
Sbjct: 568 NPTVLTYNALVQGLCKNQEGDLAEELLKEMVSKGM 602



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 87/374 (23%), Positives = 147/374 (39%), Gaps = 32/374 (8%)

Query: 21  RKRSTFASHLDVPNLPPTIKTLCEIIANTPSPTVEDVLDKTLIRVSQETVEQVLKFSY-- 78
           +K   F  H++   + P I T   I+    S    +  D  L  + ++ +E    F+Y  
Sbjct: 238 KKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTMKRQKIEPD-SFTYGS 296

Query: 79  --------SHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKS--MK 128
                        A K F     Q   + S   +N ++D        D M  A K   +K
Sbjct: 297 LISGMCKQGRLEEASKIFE-EMVQKGLRPSAVIYNTLIDGFCNKGNLD-MASAYKDEMLK 354

Query: 129 KENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTID 188
           K    +++T+ S+  +  +  R  +A      +++ G   D    N L++  CR      
Sbjct: 355 KGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCRCANAKK 414

Query: 189 AWQFL-RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSY 247
           A+     ++   IKP   TY  LL    K+  +  A   F ++  E G  PD +      
Sbjct: 415 AFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSE-GVLPDAI-----M 468

Query: 248 LITLLKG------CDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWG 301
              L+ G        G +E +  + RM  +     +TF  +    C  G+ +  A  ++ 
Sbjct: 469 FNALIDGHCSNSNVKGAFELLKDMDRM--KVPPDEVTFNTIMQGHCREGK-VEEARELFD 525

Query: 302 AMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKG 361
            M  R G +PD   +N +IS Y    +   A ++ +EM+  G  P + TYN L + L K 
Sbjct: 526 EMKRR-GIKPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNALVQGLCKN 584

Query: 362 RKLWEASGLFNEMV 375
           ++   A  L  EMV
Sbjct: 585 QEGDLAEELLKEMV 598


>gi|224136310|ref|XP_002326829.1| predicted protein [Populus trichocarpa]
 gi|222835144|gb|EEE73579.1| predicted protein [Populus trichocarpa]
          Length = 664

 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 95/395 (24%), Positives = 162/395 (41%), Gaps = 47/395 (11%)

Query: 42  LCEIIANTP-SPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHS 100
           +  +I + P S  +E  L      +S+ T  QVL+F  S P  A +FF W++      H 
Sbjct: 1   MARLINSKPWSTELESSLFSLSPSISKTTFFQVLRFIASPP-KAFEFFNWASRN-GFAHD 58

Query: 101 PYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLAT----FASVFSSYVVADRVKDAIT 156
             ++ +++D+LG+N   +   + + S+++ +  S+        ++  SY  A    +AI 
Sbjct: 59  SRSYFMMLDILGRNGNLNIARNFLFSIERRSNGSVKIEDRFCNTLLRSYGNAGLFNEAIK 118

Query: 157 TFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR--IKPDNDTYAILLEGW 214
            F +M+  G    V   NSLL  + + G+T  A      + G   + PD  T+ IL+ G+
Sbjct: 119 LFSLMKSSGVSPSVITFNSLLLILLKRGRTNMAHSVFDEMCGTYGVTPDTYTFNILIRGF 178

Query: 215 EKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYL-------------------------- 248
            K   V    + F EM      +PD V  Y++ +                          
Sbjct: 179 CKNSMVDEGFRFFKEMS-RFNCEPD-VVTYNTLVDGLCRAGKVRIAHNVVKGMVKKMKDL 236

Query: 249 -------ITLLKG-C--DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEF 298
                   TL++G C    I E +   + M+ RG  P    +    +     Q     + 
Sbjct: 237 SPDVVTYTTLVRGYCMKQEIDEALVVFEEMVSRGLKPNDITYNTLIKGLCEVQKFDKIKE 296

Query: 299 IWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFL 358
           I G  VG  GF PDT  YN +++  C +     A+K+  +M      PD  TY++L   L
Sbjct: 297 ILGGAVGGRGFVPDTCTYNTLMNAQCDAGNFDEALKMFKKMKELKVQPDSATYSVLIRNL 356

Query: 359 VKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVY 393
            +      A  LF+++   + +L  + C   V  Y
Sbjct: 357 CQRGDFERAEQLFDKLSDEDILLRDDGCTPLVAAY 391



 Score = 45.1 bits (105), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 74/333 (22%), Positives = 129/333 (38%), Gaps = 53/333 (15%)

Query: 117 FDAMWDAIKSMKKENVLSLATFASVF-------SSYVVADRVKDAITTFDVM-EQYGCKH 168
           FD      K MK+  V   +   SV          +  A+++ D ++  D++    GC  
Sbjct: 327 FDEALKMFKKMKELKVQPDSATYSVLIRNLCQRGDFERAEQLFDKLSDEDILLRDDGCTP 386

Query: 169 DVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFG 228
            V A N +   +C++GKT  A +  R +  +   D  +Y  L+ G  KE       K   
Sbjct: 387 LVAAYNPIFDFLCKNGKTHKAERVFRQLMKKGTQDPPSYKTLIIGHCKEGTFEAGYKLLL 446

Query: 229 EMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETV---NSLKRMMERGCNPGMTFFKLAFE 285
            M+       D VP +++Y++ L+ G     E +    +L+RM++    P  + F     
Sbjct: 447 FMLRR-----DYVPDFETYVL-LINGFLQKGEPILAYKTLERMLKSSYLPKTSVFHSILS 500

Query: 286 ECLTGQNLRGAEFIWGAMVGR------------------IGFR-----------PDTHMY 316
           E L     R +      M+ R                   G R            + +M 
Sbjct: 501 ELLKNDFARESASFVVLMIDRKIRQNINLSTHTMRLLFGSGLRIKAFQIVELLYDNGYMV 560

Query: 317 NM--MISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
           +M  +I   C + +   A K+L   +  G   DI   N++ E L K ++  EA GL+  +
Sbjct: 561 DMEELIGFICQNGKLLDAQKMLSFCLEKGHNVDINVCNVVIEGLCKMKRPLEAFGLYYML 620

Query: 375 VKNENVLNHE--NCRAAVRVYMDSDDPYVAIKF 405
           V+     NH+  +C   +R  +++       KF
Sbjct: 621 VEKS---NHQQLSCLEGLRTALEAGGRSEEAKF 650



 Score = 41.6 bits (96), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 58/138 (42%), Gaps = 1/138 (0%)

Query: 317 NMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK 376
           N ++  Y  +     A+KL   M  +G  P + T+N L   L+K  +   A  +F+EM  
Sbjct: 101 NTLLRSYGNAGLFNEAIKLFSLMKSSGVSPSVITFNSLLLILLKRGRTNMAHSVFDEMCG 160

Query: 377 NENVL-NHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLP 435
              V  +       +R +  +       +F+K M   +C     T N LV GLC    + 
Sbjct: 161 TYGVTPDTYTFNILIRGFCKNSMVDEGFRFFKEMSRFNCEPDVVTYNTLVDGLCRAGKVR 220

Query: 436 EAVKYAKGMAEKGIQVTP 453
            A    KGM +K   ++P
Sbjct: 221 IAHNVVKGMVKKMKDLSP 238


>gi|225425456|ref|XP_002272556.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01570
           [Vitis vinifera]
          Length = 792

 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 95/356 (26%), Positives = 158/356 (44%), Gaps = 32/356 (8%)

Query: 40  KTLCEIIANTPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKH 99
           KTL E    T SP +E       I +S+  V Q+L  +       V+FFRW +++ N KH
Sbjct: 30  KTLSE--RGTRSPDLES------IPISESLVVQILGRNSIDVFRKVEFFRWCSFRHNYKH 81

Query: 100 SPYAWNLVVDLLGKNC--LFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAIT 156
           S  A++ +  ++ +      D +   + SMK + V+    TF  +  S + A +   A+ 
Sbjct: 82  SVGAYSHIFRIVCRAGAEFLDQVPLLMSSMKDDGVVVGQETFKLLLDSLIRAGKFDSALE 141

Query: 157 TFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIK------PDNDTYAI 209
             D +E+ G   + +  +S+L A+ R  +   A   F +++ G         P+++    
Sbjct: 142 ILDHIEELGTGLNSYVYDSVLVALIRKNQLGLALPLFFKLLGGDEGQGGVPVPESNACNQ 201

Query: 210 LLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLK-GCDGIYET-VNSLKR 267
           LL    K       +  F ++  +  +D D       Y I +   GC G   T +N  K 
Sbjct: 202 LLVALRKADMKIEFRNVFEKLRAKKDFDLDT----QGYNICIHAFGCWGDLGTALNLFKE 257

Query: 268 MMERGCNPGM------TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMIS 321
           M ++  N         T+  L    CL G+ ++ A  +W  + G  G  PD   Y ++I 
Sbjct: 258 MKDKSLNSSSFGPDLCTYNSLIRVLCLVGK-VKDALIVWEELKGS-GHEPDAFTYRILIQ 315

Query: 322 LYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKN 377
               S     AM++ +EM YNG  PD   YN L + L K RK+ EA  +F +MV++
Sbjct: 316 GCSKSYRMDDAMRIFNEMQYNGFCPDTIVYNTLLDGLFKARKVMEACQVFEKMVED 371



 Score = 43.9 bits (102), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 46/105 (43%)

Query: 311 PDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGL 370
           PD   YN++I           A  +LD ++  G + DI  YN L   L K  ++ EA+ L
Sbjct: 653 PDIATYNVIIQGLGKMGRADLASAVLDMLMKQGGYLDIVMYNTLINALGKAGRIDEATKL 712

Query: 371 FNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCS 415
           F +M  +    +       + ++  +     A KF K M++  CS
Sbjct: 713 FEQMRSSGINPDVVTFNTLIEIHAKAGQLKAAYKFLKLMLDAGCS 757



 Score = 38.9 bits (89), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 38/163 (23%), Positives = 72/163 (44%), Gaps = 11/163 (6%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           T+ S+F   +   ++  A   F++    G    ++  NS+++A  + G   +AW     +
Sbjct: 590 TYLSIF---LAKGKLSLACKLFEIFSNMGVDPVIYTYNSMMTAFVKKGYFNEAWGVFHEM 646

Query: 197 DGRI-KPDNDTYAILLEGWEK--ERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLK 253
             ++  PD  TY ++++G  K    D+A+A     +M+++ G   D +  Y++ LI  L 
Sbjct: 647 GEKVCPPDIATYNVIIQGLGKMGRADLASA---VLDMLMKQGGYLD-IVMYNT-LINALG 701

Query: 254 GCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGA 296
               I E     ++M   G NP +  F    E       L+ A
Sbjct: 702 KAGRIDEATKLFEQMRSSGINPDVVTFNTLIEIHAKAGQLKAA 744


>gi|356551783|ref|XP_003544253.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 576

 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 85/351 (24%), Positives = 148/351 (42%), Gaps = 49/351 (13%)

Query: 132 VLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ 191
           V+ + ++  + S Y  +  +++A+   D M   G   +    +++L ++C  GK   A Q
Sbjct: 146 VIDVTSYNVLISGYCKSGEIEEALRVLDRM---GVSPNAATYDAVLCSLCDRGKLKQAMQ 202

Query: 192 FL-RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLIT 250
            L R +  +  PD  T  +L++   KE  V  A K F EM  + G  PD V  Y+     
Sbjct: 203 VLGRQLQSKCYPDVVTCTVLIDATCKESGVGQAMKLFNEMRNK-GCKPD-VVTYN----V 256

Query: 251 LLKG-CDG--IYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRI 307
           L+KG C G  + E +  LK++   GC                                  
Sbjct: 257 LIKGFCKGGRLDEAIRFLKKLPSYGC---------------------------------- 282

Query: 308 GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEA 367
             +PD   +NM++   C       AMKLL  M+  G  P + T+NIL  FL +   L +A
Sbjct: 283 --QPDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCLPSVVTFNILINFLCQKGLLGKA 340

Query: 368 SGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAG 427
             +   M K+ +  N  +    ++ + +      AI++ + M+   C     T N+L+  
Sbjct: 341 LNVLEMMPKHGHTPNSRSFNPLIQGFCNGKGIDRAIEYLEIMVSRGCYPDIVTYNILLTA 400

Query: 428 LCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKK 478
           LC    + +AV     ++ KG   +  + + +   L+K  K  +  ELL++
Sbjct: 401 LCKDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLLKVGKAELAVELLEE 451



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 88/398 (22%), Positives = 160/398 (40%), Gaps = 11/398 (2%)

Query: 57  VLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCL 116
           VLD+  +  +  T + VL  S    G   +  +    QL  K  P      V L+   C 
Sbjct: 171 VLDRMGVSPNAATYDAVL-CSLCDRGKLKQAMQVLGRQLQSKCYPDVVTCTV-LIDATCK 228

Query: 117 FDAMWDAIK---SMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFA 172
              +  A+K    M+ +     + T+  +   +    R+ +AI     +  YGC+ DV +
Sbjct: 229 ESGVGQAMKLFNEMRNKGCKPDVVTYNVLIKGFCKGGRLDEAIRFLKKLPSYGCQPDVIS 288

Query: 173 LNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMV 231
            N +L ++C  G+ +DA + L  ++     P   T+ IL+    ++  +  A     EM+
Sbjct: 289 HNMILRSLCSGGRWMDAMKLLATMLRKGCLPSVVTFNILINFLCQKGLLGKALNVL-EMM 347

Query: 232 IEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQ 291
            + G  P N  +++  +     G  GI   +  L+ M+ RGC P +  + +         
Sbjct: 348 PKHGHTP-NSRSFNPLIQGFCNG-KGIDRAIEYLEIMVSRGCYPDIVTYNILLTALCKDG 405

Query: 292 NLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTY 351
            +  A  I   +  + G  P    YN +I       +   A++LL+EM Y G  PD+ T 
Sbjct: 406 KVDDAVVILSQLSSK-GCSPSLISYNTVIDGLLKVGKAELAVELLEEMCYKGLKPDLITC 464

Query: 352 NILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIE 411
             +   L +  K+ EA   F+ + +     N     + +     S    +AI F   M+ 
Sbjct: 465 TSVVGGLSREGKVREAMKFFHYLKRFAIRPNAFIYNSIITGLCKSQQTSLAIDFLADMVA 524

Query: 412 NHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
             C     T   L+ G+    +  +A K +  +  +G+
Sbjct: 525 KGCKPTEATYTTLIKGITYEGLAEDASKLSNELYSRGL 562


>gi|357159149|ref|XP_003578355.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18900-like [Brachypodium distachyon]
          Length = 857

 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 81/327 (24%), Positives = 147/327 (44%), Gaps = 10/327 (3%)

Query: 52  PTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLL 111
           P  E VLD    ++      QVLK  + H   A+ FF W   Q   KH  + +  ++ +L
Sbjct: 316 PMTEHVLDSLHCKIDAFQANQVLKLLHDHT-MALGFFHWLKRQPGFKHDGHTYTTMIGIL 374

Query: 112 GKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDV 170
           G+   F  M + +  M ++    ++ T+  +  +Y  A+ +++A+  F+ ME+ G + D 
Sbjct: 375 GQARQFGIMRNLLHEMNRDRCKPTVVTYNRIIHAYGRANYLREAVKVFEEMEEAGYEPDR 434

Query: 171 FALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGE 229
               +L+    + G    A   + R+ +  + PD  TY+ ++    K   +A A K F E
Sbjct: 435 VTYCTLIDIHAKAGYLEVAMDLYGRMQEVGLSPDTFTYSAMVNCLGKGGQLAAAYKLFCE 494

Query: 230 MVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMME-RGCNPGMTFFKLAFEECL 288
           M IE G  P N+  Y+  +I  L+     Y+ V  L R M+  G  P    + +  E   
Sbjct: 495 M-IENGCTP-NLVTYN--IIIALQAKARNYDNVVKLYRDMQVAGFRPDKITYSIVMEVLG 550

Query: 289 TGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDI 348
              +L  AE ++  M  R  + PD  +Y +++ L+  +     A+     M+ +G  P++
Sbjct: 551 HCGHLDEAEAVFIEM--RRDWAPDEPVYGLLVDLWGKAGNVDKALGWYHAMLQDGLQPNV 608

Query: 349 QTYNILFEFLVKGRKLWEASGLFNEMV 375
            T N L    +K  +  +A  +   M+
Sbjct: 609 PTCNSLLSAFLKINRFQDAYSVLQNML 635



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 60/249 (24%), Positives = 99/249 (39%), Gaps = 11/249 (4%)

Query: 129 KENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTID 188
           + N+ SL +  +V   Y    ++K    T  V++   CK D F  N +L  +      + 
Sbjct: 290 QSNLRSLKSLRAVEQYYHTLQQMKWGPMTEHVLDSLHCKIDAFQANQVLKLLHDHTMALG 349

Query: 189 AWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNV-PAYDSY 247
            + +L+   G  K D  TY  ++    + R     +    EM      + D   P   +Y
Sbjct: 350 FFHWLKRQPG-FKHDGHTYTTMIGILGQARQFGIMRNLLHEM------NRDRCKPTVVTY 402

Query: 248 --LITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVG 305
             +I      + + E V   + M E G  P    +    +       L  A  ++G M  
Sbjct: 403 NRIIHAYGRANYLREAVKVFEEMEEAGYEPDRVTYCTLIDIHAKAGYLEVAMDLYGRMQ- 461

Query: 306 RIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLW 365
            +G  PDT  Y+ M++      +  AA KL  EM+ NG  P++ TYNI+     K R   
Sbjct: 462 EVGLSPDTFTYSAMVNCLGKGGQLAAAYKLFCEMIENGCTPNLVTYNIIIALQAKARNYD 521

Query: 366 EASGLFNEM 374
               L+ +M
Sbjct: 522 NVVKLYRDM 530


>gi|297834384|ref|XP_002885074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330914|gb|EFH61333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 517

 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 97/424 (22%), Positives = 178/424 (41%), Gaps = 20/424 (4%)

Query: 54  VEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPY-----AWNLVV 108
           +E +LDK  I++++E V +V+  + S   PA    R     L  KHS Y      +N ++
Sbjct: 90  IERILDKCGIQLTEELVFEVVNRNRSDWKPAYILSR-----LIVKHSVYISSSLVYNEIL 144

Query: 109 DLLGKNCLFDAMWDAIKSM-KKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCK 167
           D+LGK   F+     +  M K++  +   T+  + + Y  A +V +A+  F+   ++G +
Sbjct: 145 DVLGKMRRFEEFHQVVDEMSKRDGFVDEKTYEVLLNRYAAAHKVDEAVGVFERRREFGIE 204

Query: 168 HDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTF 227
            D+ A + LL  +CR      A             D  T  I+L GW    +V  AK+ +
Sbjct: 205 DDLVAFHGLLMWLCRYKHVEFAETLFCSRRREFGCDIRTMNIILNGWCVLGNVHEAKRIW 264

Query: 228 GEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEEC 287
            + +I     PD V +Y + +I  L     + + +   + + E G NP +       +  
Sbjct: 265 KD-IIASKCKPD-VVSYGT-MINALTKKGKLGKAMELYRALWETGRNPDVKICNNVIDAL 321

Query: 288 LTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGA--F 345
              + +  A  ++  M  + G  P+   YN ++   C    T    +L++EM + G    
Sbjct: 322 CFKKRIPEALEVFKEMSEK-GPSPNVVTYNSLLKHLCKIRRTEKVWELVEEMEHKGGSCS 380

Query: 346 PDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKF 405
           P+  T+  L ++  + +   +   +   M KN+  +  +      R+Y+  D+     + 
Sbjct: 381 PNDVTFGYLLKYSQRSK---DVDAVLERMAKNKCEMTSDLYNLMFRLYVQWDNEEKVREI 437

Query: 406 WKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIK 465
           W  M  +       T  + + GL     + EA+ Y + M  KG+   P     L Q   K
Sbjct: 438 WGEMERSGLGPDQRTYTIRIHGLHTKGKIGEALSYFQEMMSKGMVPEPRTEMLLNQNKTK 497

Query: 466 ARKE 469
            R E
Sbjct: 498 PRVE 501


>gi|41152687|dbj|BAD08212.1| hypothetical protein [Oryza sativa Indica Group]
 gi|46091163|dbj|BAD13710.1| PPR protein [Oryza sativa Indica Group]
 gi|67906116|dbj|BAE00068.1| PPR protein [Oryza sativa Indica Group]
 gi|114437073|gb|ABI74690.1| fertility restorer [Oryza sativa Indica Group]
          Length = 683

 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 84/329 (25%), Positives = 143/329 (43%), Gaps = 10/329 (3%)

Query: 152 KDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV---DGRIKPDNDTYA 208
           +DA   FD + + G   DVF+ N LL+ +C + ++ +A + L ++    G   PD  +Y+
Sbjct: 34  EDARHVFDELLRRGIP-DVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYS 92

Query: 209 ILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRM 268
            ++ G+ KE D+     T+ EM ++    P NV  Y+S +  L K    + + +  L  M
Sbjct: 93  TVINGFFKEGDLDKTYSTYNEM-LDQRISP-NVVTYNSIIAALCKA-QTVDKAMEVLTTM 149

Query: 269 MERGCNPG-MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSN 327
           ++ G  P  MT+  +    C +GQ      F+    +   G  PD   YN ++   C + 
Sbjct: 150 VKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFL--KKMRSDGVEPDVVTYNSLMDYLCKNG 207

Query: 328 ETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCR 387
               A K+ D M   G  P+I TY  L +       L E  GL + MV+N    NH    
Sbjct: 208 RCTEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFS 267

Query: 388 AAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEK 447
             V  Y   +    A+  +  M +   +  + T   ++  LC    + +A+ Y + M ++
Sbjct: 268 ILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDE 327

Query: 448 GIQVTPFALSKLKQILIKARKEAVYEELL 476
           G+       + L   L    K    EEL+
Sbjct: 328 GLSPGNIVYNSLIHGLCTCNKWERAEELI 356



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 94/371 (25%), Positives = 158/371 (42%), Gaps = 35/371 (9%)

Query: 24  STFASHLDVPNLPPTIKTLCEIIAN-TPSPTVEDVLDKTLIRVSQETVEQVLKF------ 76
           ST+   LD   + P + T   IIA    + TV+  ++     V    +   + +      
Sbjct: 109 STYNEMLD-QRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHG 167

Query: 77  --SYSHPGPAVKFFRWSAYQLNDKHSP--YAWNLVVDLLGKN--C-----LFDAMWDAIK 125
             S   P  A+ F +      +D   P    +N ++D L KN  C     +FD+M    +
Sbjct: 168 FCSSGQPKEAIVFLKK---MRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTK--R 222

Query: 126 SMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGK 185
            +K E    + T+ ++   Y     + +     D+M + G   + +  + L+ A  +  K
Sbjct: 223 GLKPE----ITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEK 278

Query: 186 TIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAY 244
             +A   F ++    + P+  TY  ++    K   V +A   F +M+ E G  P N+  Y
Sbjct: 279 VEEAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDE-GLSPGNI-VY 336

Query: 245 DSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEE-CLTGQNLRGAEFIWGAM 303
           +S LI  L  C+        +  M++RG      FF    +  C  G+ +  +E ++  M
Sbjct: 337 NS-LIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIE-SEKLFDLM 394

Query: 304 VGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRK 363
           V RIG +PD   Y+ +I  YC + +   A KLL  MV  G  PD  TY+ L     K  +
Sbjct: 395 V-RIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYSTLINGYCKISR 453

Query: 364 LWEASGLFNEM 374
           + +A  LF EM
Sbjct: 454 MKDALVLFREM 464



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 67/271 (24%), Positives = 124/271 (45%), Gaps = 35/271 (12%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDA-WQFLRV 195
            F+ +  +Y   ++V++A+  F  M Q G   +     +++  +C+ G+  DA   F ++
Sbjct: 265 VFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQM 324

Query: 196 VDGRIKPDNDTYAILLEG------WEKERDVANAKKTFGEMVIEVGWDPD---NVPAYDS 246
           +D  + P N  Y  L+ G      WE+            E+++E+  D     N   ++S
Sbjct: 325 IDEGLSPGNIVYNSLIHGLCTCNKWERAE----------ELILEM-LDRGICLNTIFFNS 373

Query: 247 YLITLLKGCDG-IYETVNSLKRMMERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMV 304
            + +  K  +G + E+      M+  G  P + T+  L    CL G+ +  A  +  +MV
Sbjct: 374 IIDSHCK--EGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGK-MDEATKLLASMV 430

Query: 305 GRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKL 364
             +G +PD   Y+ +I+ YC  +    A+ L  EM  +G  PDI TYNI+ + L + R+ 
Sbjct: 431 S-VGMKPDCVTYSTLINGYCKISRMKDALVLFREMESSGVSPDIITYNIILQGLFQTRRT 489

Query: 365 WEASGLFNEMVKNE--------NVLNHENCR 387
             A  L+  + K+         N++ H  C+
Sbjct: 490 AAAKELYVGITKSGRQLELSTYNIILHGLCK 520



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 69/328 (21%), Positives = 140/328 (42%), Gaps = 12/328 (3%)

Query: 158 FDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEK 216
            +++++  C + +F  NS++ + C++G+ I++ + F  +V   +KPD  TY+ L++G+  
Sbjct: 357 LEMLDRGICLNTIF-FNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCL 415

Query: 217 ERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSL---KRMMERGC 273
              +  A K    MV  VG  PD V        TL+ G   I    ++L   + M   G 
Sbjct: 416 AGKMDEATKLLASMV-SVGMKPDCVTYS-----TLINGYCKISRMKDALVLFREMESSGV 469

Query: 274 NPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAM 333
           +P +  + +  +     +    A+ ++   + + G + +   YN+++   C +  T  A+
Sbjct: 470 SPDIITYNIILQGLFQTRRTAAAKELYVG-ITKSGRQLELSTYNIILHGLCKNKLTDDAL 528

Query: 334 KLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVY 393
           ++   +       + +T+NI+ + L+K  +  EA  LF     N  V N+   R      
Sbjct: 529 RMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENI 588

Query: 394 MDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTP 453
           +         + +  M +N C+  S   N +V  L     +  A  Y   + EK   +  
Sbjct: 589 IGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEITRAGTYLSMIDEKHFSLEA 648

Query: 454 FALSKLKQILIKARKEAVYEELLKKCKA 481
              S    +L   + +  +  L +K K+
Sbjct: 649 STASLFIDLLSGGKYQEYHRFLPEKYKS 676



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 70/337 (20%), Positives = 139/337 (41%), Gaps = 34/337 (10%)

Query: 109 DLLGKNCLFDAMWDAIKSMKKENVLSL------------ATFASVFSSYVVADRVKDAIT 156
           D+   N L + + D  +S +   +L +             ++++V + +     +    +
Sbjct: 50  DVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTVINGFFKEGDLDKTYS 109

Query: 157 TFDVMEQYGCKHDVFALNSLLSAICRDGKTID-AWQFL-RVVDGRIKPDNDTYAILLEGW 214
           T++ M       +V   NS+++A+C+  +T+D A + L  +V   + PD  TY  ++ G+
Sbjct: 110 TYNEMLDQRISPNVVTYNSIIAALCK-AQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGF 168

Query: 215 EKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCN 274
                   A     +M  + G +PD V  Y+S +  L K      E       M +RG  
Sbjct: 169 CSSGQPKEAIVFLKKMRSD-GVEPD-VVTYNSLMDYLCKN-GRCTEARKIFDSMTKRGLK 225

Query: 275 PGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMK 334
           P +T +    +   T   L     +   MV R G  P+ +++++++  Y    +   AM 
Sbjct: 226 PEITTYGTLLQGYATKGALVEMHGLLDLMV-RNGIHPNHYVFSILVCAYAKQEKVEEAML 284

Query: 335 LLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNE--------NVLNHENC 386
           +  +M   G  P+  TY  +   L K  ++ +A   F +M+           N L H  C
Sbjct: 285 VFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLC 344

Query: 387 RA-----AVRVYMDSDDPYVAIK--FWKYMIENHCSD 416
                  A  + ++  D  + +   F+  +I++HC +
Sbjct: 345 TCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKE 381



 Score = 39.7 bits (91), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 29/128 (22%), Positives = 58/128 (45%), Gaps = 5/128 (3%)

Query: 110 LLGKNCLFDAMWDAIKSMKKENVLSL----ATFASVFSSYVVADRVKDAITTFDVMEQYG 165
           L+   CL   M +A K +     + +     T++++ + Y    R+KDA+  F  ME  G
Sbjct: 409 LIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYSTLINGYCKISRMKDALVLFREMESSG 468

Query: 166 CKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDVANAK 224
              D+   N +L  + +  +T  A + ++ +     + +  TY I+L G  K +   +A 
Sbjct: 469 VSPDIITYNIILQGLFQTRRTAAAKELYVGITKSGRQLELSTYNIILHGLCKNKLTDDAL 528

Query: 225 KTFGEMVI 232
           + F  + +
Sbjct: 529 RMFQNLCL 536


>gi|449520323|ref|XP_004167183.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 90/371 (24%), Positives = 168/371 (45%), Gaps = 22/371 (5%)

Query: 91  SAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVAD 149
           S Y +N K    ++++++D L K+   D   D  + MK + +  ++ ++ S+   +    
Sbjct: 232 SLYGINFKPVVISYSIIIDALCKDRREDEARDLFEEMKVQGMTPTVISYTSLIHGFCCGG 291

Query: 150 RVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYA 208
           + ++A   F+ M   G + +V   N L+  +C++GK I+A   L V+  R I P+  TY 
Sbjct: 292 KWEEAKRLFNEMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYN 351

Query: 209 ILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRM 268
            L+EG+    D+ +A++ F  M  + G +PD V  Y + LI        + E +     M
Sbjct: 352 SLIEGFCLVGDLNSARELFVSMPSK-GCEPD-VICY-TVLINGYCKTSKVEEAMKLYNGM 408

Query: 269 MERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNE 328
           ++ G  P +  +         G  +  A+ ++G M    G   D ++Y + ++  C +  
Sbjct: 409 LQVGKRPDVKTYGALLTGLFQGGKVGDAKKLFGVM-KVYGIPGDLYIYGIFLNGLCKNGC 467

Query: 329 TGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNE--------NV 380
              AM+L +++       DI+ +N L + L K  KL  A  LF ++ + E        N+
Sbjct: 468 LFEAMELFNKLKSYNIKLDIECFNCLIDGLCKAGKLETAWELFEKLPQEELQPDVVTYNI 527

Query: 381 LNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKY 440
           + HE CR    V  +       I F K M +N C+    T   L+ G  +   L + V+ 
Sbjct: 528 MIHEFCRGGQVVKAN-------ILFQK-MEKNGCTPDKITYATLIRGFFESKKLEKVVEL 579

Query: 441 AKGMAEKGIQV 451
              M ++ + +
Sbjct: 580 LHMMVQRDVSL 590



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 75/330 (22%), Positives = 134/330 (40%), Gaps = 62/330 (18%)

Query: 127 MKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKT 186
           +++  +  + T+ ++     +  R+  A   F  M++ GC  +     +L+  +CR G  
Sbjct: 158 LRRGYIPDIVTYTTLIKGLCMEHRISKAALLFTRMQKLGCTPNAITYGTLMKGLCRTGNI 217

Query: 187 IDAWQFLR-------VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPD 239
             A +  +       +     KP   +Y+I+++   K+R    A+  F EM ++ G  P 
Sbjct: 218 SIALKLHQEMLNDSSLYGINFKPVVISYSIIIDALCKDRREDEARDLFEEMKVQ-GMTP- 275

Query: 240 NVPAYDSY----------------------------------LITLLKGCDGIYETVNSL 265
            V +Y S                                   LI +L     + E  + L
Sbjct: 276 TVISYTSLIHGFCCGGKWEEAKRLFNEMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLL 335

Query: 266 KRMMERGCNPGMTFFKLAFEE-CLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYC 324
           + M++RG  P +  +    E  CL G +L  A  ++ +M  + G  PD   Y ++I+ YC
Sbjct: 336 EVMIQRGIVPNLLTYNSLIEGFCLVG-DLNSARELFVSMPSK-GCEPDVICYTVLINGYC 393

Query: 325 YSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHE 384
            +++   AMKL + M+  G  PD++TY  L   L +G K+ +A  LF  M          
Sbjct: 394 KTSKVEEAMKLYNGMLQVGKRPDVKTYGALLTGLFQGGKVGDAKKLFGVM---------- 443

Query: 385 NCRAAVRVYMDSDDPYVAIKFWKYMIENHC 414
                 +VY    D Y+   F   + +N C
Sbjct: 444 ------KVYGIPGDLYIYGIFLNGLCKNGC 467



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 77/321 (23%), Positives = 114/321 (35%), Gaps = 42/321 (13%)

Query: 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR 194
           L++F  + S              ++ M   G   D   LN LL+ +C   +  +    L 
Sbjct: 96  LSSFTHLLSGLAKIKHYSQVFYLYNQMRLSGISPDCCTLNILLNCLCNVNRVGEG---LA 152

Query: 195 VVDGRIK----PDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLIT 250
           V+ G ++    PD  TY  L++G   E  ++ A   F  M  ++G  P+ +  Y     T
Sbjct: 153 VMAGILRRGYIPDIVTYTTLIKGLCMEHRISKAALLFTRMQ-KLGCTPNAI-TYG----T 206

Query: 251 LLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAF-EECLTGQNLRGAEFIWGAMVGRIGF 309
           L+KG                  C  G     L   +E L   +L G           I F
Sbjct: 207 LMKGL-----------------CRTGNISIALKLHQEMLNDSSLYG-----------INF 238

Query: 310 RPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASG 369
           +P    Y+++I   C       A  L +EM   G  P + +Y  L      G K  EA  
Sbjct: 239 KPVVISYSIIIDALCKDRREDEARDLFEEMKVQGMTPTVISYTSLIHGFCCGGKWEEAKR 298

Query: 370 LFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLC 429
           LFNEMV      N       + V         A    + MI+        T N L+ G C
Sbjct: 299 LFNEMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFC 358

Query: 430 DMHMLPEAVKYAKGMAEKGIQ 450
            +  L  A +    M  KG +
Sbjct: 359 LVGDLNSARELFVSMPSKGCE 379


>gi|357499777|ref|XP_003620177.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495192|gb|AES76395.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 612

 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 87/375 (23%), Positives = 160/375 (42%), Gaps = 28/375 (7%)

Query: 117 FDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSL 176
           F    + +K   + N ++L T   +     +  ++  A+   D +   G   +     +L
Sbjct: 111 FSVFANILKKGYEPNAITLTT---LIKGLCLKGQIHQALHFHDKVVALGFHLNKVCYGTL 167

Query: 177 LSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVG 235
           ++ +C+ G+T  A Q LR VDG+ ++P+   Y  +++   K + V  A   + EMV + G
Sbjct: 168 INGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSK-G 226

Query: 236 WDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRG 295
             PD V    S LI+       + + +    +M+    NP +  F +  +       ++ 
Sbjct: 227 ISPDVVTY--SALISGFCILGKLNDAIGLFNKMISEEINPDVYTFSILVDGFCKEGRVKE 284

Query: 296 AEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILF 355
           A+ +  AM+ + G +PD   Y  ++  YC   +   A  + + M   G   ++Q+YNI+ 
Sbjct: 285 AKNVL-AMMMKQGIKPDVVTYCSLMDGYCLVKQVNKAKSIFNTMAQGGVTANVQSYNIMI 343

Query: 356 EFLVKGRKLWEASGLFNEM--------VKNENVLNHENCRAAVRVYMDSDDPYVAIKFWK 407
               K +K+ EA  LF EM        V   N L    C++    Y        A+K   
Sbjct: 344 NGFCKIKKVDEAMNLFKEMHCKNIIPDVVTYNSLIDGLCKSGKISY--------ALKLVD 395

Query: 408 YMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKAR 467
            M +        T N ++  LC  H + +A+     M ++GIQ   +  + L   L K  
Sbjct: 396 EMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDMYTYTILIDGLCKGG 455

Query: 468 K----EAVYEELLKK 478
           +    + ++E+LL K
Sbjct: 456 RLKDAQNIFEDLLVK 470



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 68/276 (24%), Positives = 128/276 (46%), Gaps = 6/276 (2%)

Query: 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDV 160
           Y ++++VD   K        + +  M K+ +   + T+ S+   Y +  +V  A + F+ 
Sbjct: 267 YTFSILVDGFCKEGRVKEAKNVLAMMMKQGIKPDVVTYCSLMDGYCLVKQVNKAKSIFNT 326

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERD 219
           M Q G   +V + N +++  C+  K  +A    + +  + I PD  TY  L++G  K   
Sbjct: 327 MAQGGVTANVQSYNIMINGFCKIKKVDEAMNLFKEMHCKNIIPDVVTYNSLIDGLCKSGK 386

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTF 279
           ++ A K   EM  + G   D +  Y+S L  L K    + + +  L +M + G  P M  
Sbjct: 387 ISYALKLVDEMH-DRGVPHDKI-TYNSILDALCKN-HQVDKAIALLTKMKDEGIQPDMYT 443

Query: 280 FKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEM 339
           + +  +    G  L+ A+ I+  ++ + G+    + Y +MI  +C ++    A+ LL +M
Sbjct: 444 YTILIDGLCKGGRLKDAQNIFEDLLVK-GYNITVYTYTVMIQGFCDNDLFDKALALLSKM 502

Query: 340 VYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
             NG  P+ +TY I+   L +  +   A  L  EM+
Sbjct: 503 EDNGCIPNAKTYEIIILSLFEKDENDMAEKLLREMI 538



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 65/342 (19%), Positives = 139/342 (40%), Gaps = 37/342 (10%)

Query: 104 WNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVME 162
           +N ++D + K  L +  +D    M  + +   + T++++ S + +  ++ DAI  F+ M 
Sbjct: 199 YNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYSALISGFCILGKLNDAIGLFNKMI 258

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVA 221
                 DV+  + L+   C++G+  +A   L ++  + IKPD  TY  L++G+   + V 
Sbjct: 259 SEEINPDVYTFSILVDGFCKEGRVKEAKNVLAMMMKQGIKPDVVTYCSLMDGYCLVKQVN 318

Query: 222 NAKKTFGEMVIEVGWDPDNVPAYDSYL------------ITLLK--GCDGIYETVNSLKR 267
            AK  F  M    G    NV +Y+  +            + L K   C  I   V +   
Sbjct: 319 KAKSIFNTMA--QGGVTANVQSYNIMINGFCKIKKVDEAMNLFKEMHCKNIIPDVVTYNS 376

Query: 268 MMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRI-------------------G 308
           +++  C  G   + L   + +  + +   +  + +++  +                   G
Sbjct: 377 LIDGLCKSGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEG 436

Query: 309 FRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEAS 368
            +PD + Y ++I   C       A  + ++++  G    + TY ++ +         +A 
Sbjct: 437 IQPDMYTYTILIDGLCKGGRLKDAQNIFEDLLVKGYNITVYTYTVMIQGFCDNDLFDKAL 496

Query: 369 GLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMI 410
            L ++M  N  + N +     +    + D+  +A K  + MI
Sbjct: 497 ALLSKMEDNGCIPNAKTYEIIILSLFEKDENDMAEKLLREMI 538


>gi|357120446|ref|XP_003561938.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Brachypodium distachyon]
          Length = 787

 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 81/349 (23%), Positives = 130/349 (37%), Gaps = 39/349 (11%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RV 195
           TF  +  ++     + DA++T   M+ +G   D    N+LL+A CR G   +A   L R+
Sbjct: 206 TFNLLVHTHCSKGTLADALSTLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEARALLARM 265

Query: 196 VDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPD---------------- 239
               + P   TY  L+  + +   +  A K    M    G++PD                
Sbjct: 266 KKDGVAPTRPTYNTLVSAYARLGWIKQATKVVEAMTAN-GFEPDLWTYNVLAAGLCQAGK 324

Query: 240 -------------------NVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFF 280
                              +V  Y++      K C    + +  L+ M E+G    +   
Sbjct: 325 VDEAFRLKDEMERLGTLLPDVVTYNTLADACFK-CRCSSDALRLLEEMREKGVKATLVTH 383

Query: 281 KLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMV 340
            +  +       L GA      M    G  PD   YN +I  +C +     A  L+DEMV
Sbjct: 384 NIVIKGLCKDGELEGALGCLNKMADD-GLAPDVITYNTLIHAHCKAGNIAKAYTLMDEMV 442

Query: 341 YNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPY 400
             G   D  T N +   L K ++  EA GL     +   + +  +    +  Y    +  
Sbjct: 443 RRGLKLDTFTLNTVLYNLCKEKRYEEAQGLLQSPPQRGFMPDEVSYGTVMAAYFKEYNSE 502

Query: 401 VAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
            A++ W  MIE   +    T N L+ GL  M  L EA+     + EKG+
Sbjct: 503 PALRLWDEMIEKKLTPSISTYNTLIKGLSRMGRLKEAIDKLNELMEKGL 551



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 102/403 (25%), Positives = 165/403 (40%), Gaps = 57/403 (14%)

Query: 110 LLGKNCLFDAMWDA---IKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVMEQYG 165
           LL  +C    + +A   +  MKK+ V  +  T+ ++ S+Y     +K A    + M   G
Sbjct: 245 LLNAHCRKGMLGEARALLARMKKDGVAPTRPTYNTLVSAYARLGWIKQATKVVEAMTANG 304

Query: 166 CKHDVFALNSLLSAICRDGKTIDAWQFLRVVD--GRIKPDNDTYAILLEGWEKERDVANA 223
            + D++  N L + +C+ GK  +A++    ++  G + PD  TY  L +   K R  ++A
Sbjct: 305 FEPDLWTYNVLAAGLCQAGKVDEAFRLKDEMERLGTLLPDVVTYNTLADACFKCRCSSDA 364

Query: 224 KKTFGEMVIEVGWDPDNVPAYDSYLIT---LLKGC--DGIYE-TVNSLKRMMERGCNPG- 276
            +   EM  E G          + L+T   ++KG   DG  E  +  L +M + G  P  
Sbjct: 365 LRLLEEMR-EKG--------VKATLVTHNIVIKGLCKDGELEGALGCLNKMADDGLAPDV 415

Query: 277 MTFFKLAFEECLTGQNLRGAEFIWGAMVGR------------------------------ 306
           +T+  L    C  G N+  A  +   MV R                              
Sbjct: 416 ITYNTLIHAHCKAG-NIAKAYTLMDEMVRRGLKLDTFTLNTVLYNLCKEKRYEEAQGLLQ 474

Query: 307 ----IGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGR 362
                GF PD   Y  +++ Y     +  A++L DEM+     P I TYN L + L +  
Sbjct: 475 SPPQRGFMPDEVSYGTVMAAYFKEYNSEPALRLWDEMIEKKLTPSISTYNTLIKGLSRMG 534

Query: 363 KLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGN 422
           +L EA    NE+++   V +       +  Y    D   A +F   M+EN       T N
Sbjct: 535 RLKEAIDKLNELMEKGLVPDDTTYNIIIHAYCKEGDLENAFQFHNKMVENSFKPDVVTCN 594

Query: 423 LLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIK 465
            L+ GLC    L +A+K  +   EKG +V     + L Q + K
Sbjct: 595 TLMNGLCLNGKLDKALKLFESWVEKGKKVDVITYNTLIQTMCK 637



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 87/404 (21%), Positives = 158/404 (39%), Gaps = 39/404 (9%)

Query: 105 NLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVMEQ 163
           N+V+  L K+   +     +  M  + +   + T+ ++  ++  A  +  A T  D M +
Sbjct: 384 NIVIKGLCKDGELEGALGCLNKMADDGLAPDVITYNTLIHAHCKAGNIAKAYTLMDEMVR 443

Query: 164 YGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVAN 222
            G K D F LN++L  +C++ +  +A   L+    R   PD  +Y  ++  + KE +   
Sbjct: 444 RGLKLDTFTLNTVLYNLCKEKRYEEAQGLLQSPPQRGFMPDEVSYGTVMAAYFKEYNSEP 503

Query: 223 AKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKL 282
           A + + EM IE    P ++  Y++ LI  L     + E ++ L  +ME+G  P  T + +
Sbjct: 504 ALRLWDEM-IEKKLTP-SISTYNT-LIKGLSRMGRLKEAIDKLNELMEKGLVPDDTTYNI 560

Query: 283 AFEECLTGQNLRGAEFIWGAMV---------------------GRI-------------G 308
                    +L  A      MV                     G++             G
Sbjct: 561 IIHAYCKEGDLENAFQFHNKMVENSFKPDVVTCNTLMNGLCLNGKLDKALKLFESWVEKG 620

Query: 309 FRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEAS 368
            + D   YN +I   C   +   A+    +M   G  PD  TYN++   L +  +  EA 
Sbjct: 621 KKVDVITYNTLIQTMCKDGDVDTALHFFADMEARGLQPDAFTYNVVLSALSEAGRTEEAQ 680

Query: 369 GLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGL 428
            + +++ ++  +    +        +D  +     K  +  +EN     SE    LV GL
Sbjct: 681 NMLHKLAESGTLSQSFSSPLLKPSSVDEAESGKDAKTEEETVENPQDSASEAYTKLVNGL 740

Query: 429 CDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVY 472
           C      EA      M +KG+ V       L + L+K +K   +
Sbjct: 741 CTSGQFKEAKAILDEMMQKGMSVDSSTYITLMEGLVKRQKRLTH 784



 Score = 43.5 bits (101), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 50/140 (35%)

Query: 309 FRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEAS 368
             P+ + +N+++  +C       A+  L  M   G  PD  TYN L     +   L EA 
Sbjct: 200 LHPNHYTFNLLVHTHCSKGTLADALSTLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEAR 259

Query: 369 GLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGL 428
            L   M K+            V  Y        A K  + M  N       T N+L AGL
Sbjct: 260 ALLARMKKDGVAPTRPTYNTLVSAYARLGWIKQATKVVEAMTANGFEPDLWTYNVLAAGL 319

Query: 429 CDMHMLPEAVKYAKGMAEKG 448
           C    + EA +    M   G
Sbjct: 320 CQAGKVDEAFRLKDEMERLG 339


>gi|356529513|ref|XP_003533335.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 794

 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 88/355 (24%), Positives = 156/355 (43%), Gaps = 19/355 (5%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           S  T  ++     +  +VK A+   D +   G + +  +  +L++ +C+ G T  A + L
Sbjct: 376 STVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCKIGDTRGAIKLL 435

Query: 194 RVVDGRI-KPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
           R +DGR+ KP+ + Y+ +++   K + V+ A   F EM ++ G   D V    S LI   
Sbjct: 436 RKIDGRLTKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVK-GISADVVTY--STLIYGF 492

Query: 253 KGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD 312
                + E +  L  M+ +  NP +  + +  +       ++ A+ +   M+ +   +PD
Sbjct: 493 CIVGKLKEAIGLLNEMVLKTINPDVRTYTILVDALGKEGKVKEAKSVLAVML-KACVKPD 551

Query: 313 THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFN 372
              YN +++ Y    E   A  + + M   G  PD+ TY IL     K + + EA  LF 
Sbjct: 552 VFTYNTLMNGYLLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKSKMVDEALNLFK 611

Query: 373 EMVKNENVLNHENCRAAVRVYMDSDD-PYVAIKFWKYMIE----NHCSDLSETGNLLVAG 427
           EM +   V +     + V     S    YV    W  + E       +D+  T N L+ G
Sbjct: 612 EMHQKNMVPDTVTYSSLVDGLCKSGRISYV----WDLIDEMRDRGQPADVI-TYNSLIDG 666

Query: 428 LCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARK----EAVYEELLKK 478
           LC    L +A+     M ++GI+   F  + L   L K  +    + V+++LL K
Sbjct: 667 LCKNGHLDKAIALFNKMKDQGIRPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTK 721



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 63/275 (22%), Positives = 122/275 (44%), Gaps = 6/275 (2%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVM 161
            + ++VD LGK          +  M K  V   + T+ ++ + Y++   VK A   F+ M
Sbjct: 519 TYTILVDALGKEGKVKEAKSVLAVMLKACVKPDVFTYNTLMNGYLLVYEVKKAQHVFNAM 578

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDV 220
              G   DV     L++  C+     +A    + +  + + PD  TY+ L++G  K   +
Sbjct: 579 SLMGVTPDVHTYTILINGFCKSKMVDEALNLFKEMHQKNMVPDTVTYSSLVDGLCKSGRI 638

Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFF 280
           +       EM       P +V  Y+S +  L K    + + +    +M ++G  P    F
Sbjct: 639 SYVWDLIDEM--RDRGQPADVITYNSLIDGLCKN-GHLDKAIALFNKMKDQGIRPNTFTF 695

Query: 281 KLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMV 340
            +  +    G  L+ A+ ++  ++ + G+  D ++YN+MI  +C       A+ +L +M 
Sbjct: 696 TILLDGLCKGGRLKDAQEVFQDLLTK-GYHLDVYIYNVMIYGHCKQGLLEEALTMLSKME 754

Query: 341 YNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
            NG  P+  T++I+   L K  +  +A  L  +M+
Sbjct: 755 ENGCIPNAVTFDIIINALFKKDENDKAEKLLRQMI 789



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 57/241 (23%), Positives = 112/241 (46%), Gaps = 5/241 (2%)

Query: 136 ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRV 195
            T  ++     +  +VK+A+   D +   G + +  +  +L++ +CR G T  A +FLR 
Sbjct: 64  VTLNTLIKGLCLKGQVKEALHFHDKLLAQGFQLNQVSYATLINGVCRIGDTRAAIKFLRK 123

Query: 196 VDGRI-KPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG 254
           +DGR+ KP+ + Y  +++   K + V+ A   F EM ++      NV  Y S LI     
Sbjct: 124 IDGRLAKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTVK--GISANVVTY-STLIYGFCI 180

Query: 255 CDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTH 314
              + E +  L  M+ +  NP +  + +  +       ++ A+ +   M+ +   + +  
Sbjct: 181 VGKLKEALGLLNVMVLKTINPNVCTYNILVDALCKEGKVKEAKSVLAVML-KACVKSNVI 239

Query: 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
            Y+ ++  Y    E   A  + + M   G  PD+ +YNI+     K +++ +A  LF EM
Sbjct: 240 TYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHSYNIMINGFCKIKRVDKALNLFKEM 299

Query: 375 V 375
           +
Sbjct: 300 I 300



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 79/378 (20%), Positives = 157/378 (41%), Gaps = 8/378 (2%)

Query: 84  AVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASVF 142
           A+KF R    +L  K +   +N ++D L K  L    +     M  + +  ++ T++++ 
Sbjct: 117 AIKFLRKIDGRL-AKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTVKGISANVVTYSTLI 175

Query: 143 SSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRV-VDGRIK 201
             + +  ++K+A+   +VM       +V   N L+ A+C++GK  +A   L V +   +K
Sbjct: 176 YGFCIVGKLKEALGLLNVMVLKTINPNVCTYNILVDALCKEGKVKEAKSVLAVMLKACVK 235

Query: 202 PDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYET 261
            +  TY+ L++G+    +V  A+  F  M + +G  PD V +Y+  +    K    + + 
Sbjct: 236 SNVITYSTLMDGYFLVYEVKKAQHVFNAMSL-MGVTPD-VHSYNIMINGFCK-IKRVDKA 292

Query: 262 VNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMIS 321
           +N  K M+     P + F K+   +                 +   G +PD    N++I+
Sbjct: 293 LNLFKEMILSRFPPIIQFNKIL--DSFAKMKHYSTAVSLSHRLELKGIQPDLFTLNILIN 350

Query: 322 LYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVL 381
            +C+  +      +L +++  G  P   T N L + L    ++ +A    ++++     L
Sbjct: 351 CFCHMGQITFGFSVLAKILKRGYPPSTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQL 410

Query: 382 NHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYA 441
           N  +    +       D   AIK  + +         E  + ++  LC   ++ EA    
Sbjct: 411 NQVSYATLINGVCKIGDTRGAIKLLRKIDGRLTKPNVEMYSTIIDALCKYQLVSEAYGLF 470

Query: 442 KGMAEKGIQVTPFALSKL 459
             M  KGI       S L
Sbjct: 471 SEMTVKGISADVVTYSTL 488



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/211 (23%), Positives = 93/211 (44%), Gaps = 13/211 (6%)

Query: 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDV 160
           + + ++++   K+ + D   +  K M ++N++    T++S+      + R+       D 
Sbjct: 588 HTYTILINGFCKSKMVDEALNLFKEMHQKNMVPDTVTYSSLVDGLCKSGRISYVWDLIDE 647

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERD 219
           M   G   DV   NSL+  +C++G    A   F ++ D  I+P+  T+ ILL+G  K   
Sbjct: 648 MRDRGQPADVITYNSLIDGLCKNGHLDKAIALFNKMKDQGIRPNTFTFTILLDGLCKGGR 707

Query: 220 VANAKKTFGEMVIEVGWDPD----NVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNP 275
           + +A++ F +++ + G+  D    NV  Y      LL+      E +  L +M E GC P
Sbjct: 708 LKDAQEVFQDLLTK-GYHLDVYIYNVMIYGHCKQGLLE------EALTMLSKMEENGCIP 760

Query: 276 GMTFFKLAFEECLTGQNLRGAEFIWGAMVGR 306
               F +             AE +   M+ R
Sbjct: 761 NAVTFDIIINALFKKDENDKAEKLLRQMIAR 791



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 74/369 (20%), Positives = 145/369 (39%), Gaps = 52/369 (14%)

Query: 84  AVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLS-LATFASVF 142
           A+K  R    +L  K +   ++ ++D L K  L    +     M  + + + + T++++ 
Sbjct: 431 AIKLLRKIDGRLT-KPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLI 489

Query: 143 SSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRV-VDGRIK 201
             + +  ++K+AI   + M       DV     L+ A+ ++GK  +A   L V +   +K
Sbjct: 490 YGFCIVGKLKEAIGLLNEMVLKTINPDVRTYTILVDALGKEGKVKEAKSVLAVMLKACVK 549

Query: 202 PDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDG--IY 259
           PD  TY  L+ G+    +V  A+  F  M + +G  PD      +Y I +   C    + 
Sbjct: 550 PDVFTYNTLMNGYLLVYEVKKAQHVFNAMSL-MGVTPD----VHTYTILINGFCKSKMVD 604

Query: 260 ETVNSLKRMMERGCNP-GMTFFKLAFEECLTGQNLRGAEFIWG----------------- 301
           E +N  K M ++   P  +T+  L    C +G+      ++W                  
Sbjct: 605 EALNLFKEMHQKNMVPDTVTYSSLVDGLCKSGR----ISYVWDLIDEMRDRGQPADVITY 660

Query: 302 -----------------AMVGRI---GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVY 341
                            A+  ++   G RP+T  + +++   C       A ++  +++ 
Sbjct: 661 NSLIDGLCKNGHLDKAIALFNKMKDQGIRPNTFTFTILLDGLCKGGRLKDAQEVFQDLLT 720

Query: 342 NGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYV 401
            G   D+  YN++     K   L EA  + ++M +N  + N       +      D+   
Sbjct: 721 KGYHLDVYIYNVMIYGHCKQGLLEEALTMLSKMEENGCIPNAVTFDIIINALFKKDENDK 780

Query: 402 AIKFWKYMI 410
           A K  + MI
Sbjct: 781 AEKLLRQMI 789



 Score = 46.2 bits (108), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 63/115 (54%), Gaps = 3/115 (2%)

Query: 261 TVNSLKRMMERGCNP-GMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMM 319
           +++ L ++++RG  P  +T   L    CL GQ ++ A      ++ + GF+ +   Y  +
Sbjct: 47  SLSVLTKILKRGYPPDTVTLNTLIKGLCLKGQ-VKEALHFHDKLLAQ-GFQLNQVSYATL 104

Query: 320 ISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
           I+  C   +T AA+K L ++    A P+++ YN + + L K + + EA GLF+EM
Sbjct: 105 INGVCRIGDTRAAIKFLRKIDGRLAKPNVEMYNTIIDALCKYQLVSEAYGLFSEM 159



 Score = 45.1 bits (105), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 70/150 (46%), Gaps = 13/150 (8%)

Query: 231 VIEVGWDPDNVPAYDSYLITLLKGC---DGIYETVNSLKRMMERGCNPG-MTFFKLAFEE 286
           +++ G+ PD V      L TL+KG      + E ++   +++ +G     +++  L    
Sbjct: 54  ILKRGYPPDTVT-----LNTLIKGLCLKGQVKEALHFHDKLLAQGFQLNQVSYATLINGV 108

Query: 287 CLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFP 346
           C  G      +F+   + GR+  +P+  MYN +I   C       A  L  EM   G   
Sbjct: 109 CRIGDTRAAIKFLR-KIDGRLA-KPNVEMYNTIIDALCKYQLVSEAYGLFSEMTVKGISA 166

Query: 347 DIQTYN-ILFEFLVKGRKLWEASGLFNEMV 375
           ++ TY+ +++ F + G KL EA GL N MV
Sbjct: 167 NVVTYSTLIYGFCIVG-KLKEALGLLNVMV 195


>gi|357127305|ref|XP_003565323.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Brachypodium distachyon]
          Length = 746

 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 71/256 (27%), Positives = 123/256 (48%), Gaps = 18/256 (7%)

Query: 128 KKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTI 187
           + E V  + T+ +V    V   R++DA    + M   G   + F  + +++  C+ G+  
Sbjct: 411 RAEVVPGVMTYGAVVDGLVRCGRLEDACKVIEEMRSKGLVPNEFVFSPVITGFCKLGEVD 470

Query: 188 DA---WQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAY 244
            A   W  +  V   IKP+   Y+ +++G  +   +  A+  F EM IE    P N+  Y
Sbjct: 471 RASRVWDTM--VAAGIKPNVVLYSAMIDGLARCGKMTEAELLFREM-IEAKCVP-NIMTY 526

Query: 245 DSYLITLLKGCDGIYETVNSL---KRMMERGCNP-GMTFFKLAFEECLTGQNLRGAEFIW 300
            S    +++G   I ++  +L   + M+  GC P  +T+  L    C  G++ + A  +W
Sbjct: 527 SS----MVRGYFQIGDSSQALSFWEDMLRIGCTPNAVTYSVLINGLCNVGRS-KDAMMVW 581

Query: 301 GAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNG-AFPDIQTYNILFEFLV 359
             M+GR G  PDT  Y  MI  +C S    A ++L  +M+  G   PD+  YN+L + L+
Sbjct: 582 KHMLGR-GCVPDTIAYTSMIKGFCVSGMVDAGLRLFYDMLARGDTHPDVICYNVLLDGLL 640

Query: 360 KGRKLWEASGLFNEMV 375
           + + L  A  L N+M+
Sbjct: 641 RAKDLPRAMDLLNQML 656



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 72/282 (25%), Positives = 129/282 (45%), Gaps = 8/282 (2%)

Query: 169 DVFALNSLLSAICRDGKTIDAWQFLR--VVDGRIKPDNDTYAILLEGWEKERDVANAKKT 226
           D F  ++++SA+   G+  DA   +   VVDG +    + +  +L    +  DV  A K 
Sbjct: 313 DKFTYSTVVSALADAGRVDDAVALVHEMVVDGVVA--AEAFNPVLGAMLRTGDVTGAAKL 370

Query: 227 FGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEE 286
           F  M ++ G  P     Y+  L  LL  C      +  ++RM      PG+  +    + 
Sbjct: 371 FSFMQLK-GCAPSAA-TYNVLLHGLLL-CGRAKAAMGVMRRMERAEVVPGVMTYGAVVDG 427

Query: 287 CLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFP 346
            +    L  A  +   M  + G  P+  +++ +I+ +C   E   A ++ D MV  G  P
Sbjct: 428 LVRCGRLEDACKVIEEMRSK-GLVPNEFVFSPVITGFCKLGEVDRASRVWDTMVAAGIKP 486

Query: 347 DIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFW 406
           ++  Y+ + + L +  K+ EA  LF EM++ + V N     + VR Y    D   A+ FW
Sbjct: 487 NVVLYSAMIDGLARCGKMTEAELLFREMIEAKCVPNIMTYSSMVRGYFQIGDSSQALSFW 546

Query: 407 KYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448
           + M+   C+  + T ++L+ GLC++    +A+   K M  +G
Sbjct: 547 EDMLRIGCTPNAVTYSVLINGLCNVGRSKDAMMVWKHMLGRG 588



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 63/266 (23%), Positives = 119/266 (44%), Gaps = 7/266 (2%)

Query: 104 WNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVME 162
           +  VVD L +    +     I+ M+ + ++ +   F+ V + +     V  A   +D M 
Sbjct: 421 YGAVVDGLVRCGRLEDACKVIEEMRSKGLVPNEFVFSPVITGFCKLGEVDRASRVWDTMV 480

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYAILLEGWEKERDVA 221
             G K +V   ++++  + R GK  +A    R +++ +  P+  TY+ ++ G+ +  D +
Sbjct: 481 AAGIKPNVVLYSAMIDGLARCGKMTEAELLFREMIEAKCVPNIMTYSSMVRGYFQIGDSS 540

Query: 222 NAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNP-GMTFF 280
            A  +F E ++ +G  P+ V  Y S LI  L       + +   K M+ RGC P  + + 
Sbjct: 541 QAL-SFWEDMLRIGCTPNAV-TY-SVLINGLCNVGRSKDAMMVWKHMLGRGCVPDTIAYT 597

Query: 281 KLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMV 340
            +    C++G    G    +  M+ R    PD   YN+++     + +   AM LL++M+
Sbjct: 598 SMIKGFCVSGMVDAGLRLFYD-MLARGDTHPDVICYNVLLDGLLRAKDLPRAMDLLNQML 656

Query: 341 YNGAFPDIQTYNILFEFLVKGRKLWE 366
                PD  T N     +  G+K  E
Sbjct: 657 DQACDPDTVTCNTFLREIEVGQKGQE 682


>gi|116789117|gb|ABK25122.1| unknown [Picea sitchensis]
          Length = 572

 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 94/415 (22%), Positives = 165/415 (39%), Gaps = 20/415 (4%)

Query: 46  IANTPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWN 105
           + + P       LD      S   V+++L+        A + F+W+  Q +  H+   ++
Sbjct: 118 LHSLPIEEARTALDDCGFIPSPNLVQKLLRRLQYDGKAAFRVFQWAGSQPDYSHTVSVYH 177

Query: 106 LVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYG 165
            ++ +LG +  FD  W  I+ M +  +++  T   +   Y  A   + AI TF  M+++ 
Sbjct: 178 TMISILGVHRKFDKGWGLIRKMHERAMVNRQTLMIMIKRYAAAHDARKAIKTFHAMDKFK 237

Query: 166 CKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGW-EKERDVANAK 224
              D      LL A+CR+    +A + +         +  ++ ++L GW     DV   K
Sbjct: 238 LAADSDDFLCLLCALCRNMFVEEAEELIHFNKKCYPLETKSFNVILYGWCNIFVDVYQVK 297

Query: 225 KTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFK--- 281
           + + EM   +   PD   +Y + +I         Y+ V     M ++G  P +  +    
Sbjct: 298 RLWEEMS-NLCITPDAF-SYTT-VICCFSKAGKFYDVVRLYDEMKKKGFTPNLKVYNAVI 354

Query: 282 --LAFEECLT-GQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDE 338
             L+ E C+    NL          +  +GF P+   Y  +I L C + +   A   LD+
Sbjct: 355 YVLSKERCVKEALNLFNK-------IREMGFHPNAVTYTYLIYLLCRTWKPEEAYSYLDK 407

Query: 339 MVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDD 398
           M+  G  P I  Y+  F F+     +     LF++M +N      E    ++R      D
Sbjct: 408 MIMEGFVPTIDIYHAFFRFVENEGAI---CKLFDKMFENGCAPTMETYIMSIRRCCSWSD 464

Query: 399 PYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTP 453
              A K W  M ++  S  S    LL+ G        EA K  + M   G  + P
Sbjct: 465 YENAFKLWNDMEKHWFSADSSIHYLLLNGFLLNGKPEEACKCYREMKVNGFSLEP 519


>gi|225428276|ref|XP_002279589.1| PREDICTED: pentatricopeptide repeat-containing protein At2g17140
           [Vitis vinifera]
 gi|297744485|emb|CBI37747.3| unnamed protein product [Vitis vinifera]
          Length = 878

 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 78/314 (24%), Positives = 142/314 (45%), Gaps = 15/314 (4%)

Query: 138 FASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVD 197
           + ++ SS+    R ++A    + M + G   DV   NS +SA+C  GK ++A +  R + 
Sbjct: 224 YNTLISSFCREGRNEEAERLVERMREDGLFPDVVTFNSRISALCSAGKILEASRIFRDMQ 283

Query: 198 -----GRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
                G  +P+  T+ ++LEG+ KE  +  AK     M  +   +   + +Y+ +L+ L+
Sbjct: 284 IDEELGLPRPNITTFNLMLEGFCKEGMLEEAKTLVESM--KRNGNLMELESYNIWLLGLV 341

Query: 253 KGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD 312
           +    + E   +LK M+++G  P +  F    +       +  A  I G M+   G  PD
Sbjct: 342 RN-GKLLEAQLALKEMVDKGIEPNIYSFNTVMDGLCKNGLISDARMIMGLMISS-GIGPD 399

Query: 313 THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFN 372
           T  Y+ ++   C + +   A  +L EM+  G  P+  T NIL   L K  +++EA  L  
Sbjct: 400 TVTYSTLLHGCCSTGKVLKANNILHEMMRRGCSPNTYTCNILLHSLWKEGRIFEAEKLLQ 459

Query: 373 EMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMH 432
           +M +    L++  C   +     S     A++  + M  +  + L   GN  + GL D  
Sbjct: 460 KMNERSYDLDNVTCNIVIDGLCKSGKLDEAVEIVEGMWIHGSAALGNLGNSFI-GLVDSS 518

Query: 433 -----MLPEAVKYA 441
                 LP+ + Y+
Sbjct: 519 SNGKKCLPDLITYS 532



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 72/284 (25%), Positives = 119/284 (41%), Gaps = 50/284 (17%)

Query: 207 YAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG--CD-GIYETVN 263
           Y ++LE   +E  V +    + +MV+  G  P+      +Y + LL    CD G +E   
Sbjct: 119 YNMVLESSLREDKVDSFSWLYKDMVV-AGVSPE------TYTLNLLIAGLCDSGRFEDAR 171

Query: 264 SL-KRMMERGCNPG-MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMIS 321
            +  +M  +GC P   +F  L    C  G ++R  E + G  +G  G +P+  +YN +IS
Sbjct: 172 EVFDKMGVKGCRPNEFSFGILVRGYCRAGLSMRALELLDG--MGSFGVQPNKVIYNTLIS 229

Query: 322 LYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVL 381
            +C       A +L++ M  +G FPD+ T+N     L    K+ EAS +F +M  +E + 
Sbjct: 230 SFCREGRNEEAERLVERMREDGLFPDVVTFNSRISALCSAGKILEASRIFRDMQIDEEL- 288

Query: 382 NHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSD------------LSETGNLL----- 424
                            P   I  +  M+E  C +            +   GNL+     
Sbjct: 289 ---------------GLPRPNITTFNLMLEGFCKEGMLEEAKTLVESMKRNGNLMELESY 333

Query: 425 ---VAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIK 465
              + GL     L EA    K M +KGI+   ++ + +   L K
Sbjct: 334 NIWLLGLVRNGKLLEAQLALKEMVDKGIEPNIYSFNTVMDGLCK 377



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 72/336 (21%), Positives = 134/336 (39%), Gaps = 42/336 (12%)

Query: 148 ADRVKDAITTFDVMEQYGCKHDVFAL---------------------------------- 173
           + R +DA   FD M   GC+ + F+                                   
Sbjct: 164 SGRFEDAREVFDKMGVKGCRPNEFSFGILVRGYCRAGLSMRALELLDGMGSFGVQPNKVI 223

Query: 174 -NSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMV 231
            N+L+S+ CR+G+  +A + + R+ +  + PD  T+   +        +  A + F +M 
Sbjct: 224 YNTLISSFCREGRNEEAERLVERMREDGLFPDVVTFNSRISALCSAGKILEASRIFRDMQ 283

Query: 232 I--EVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCN-PGMTFFKLAFEECL 288
           I  E+G    N+  ++  L    K  +G+ E   +L   M+R  N   +  + +     +
Sbjct: 284 IDEELGLPRPNITTFNLMLEGFCK--EGMLEEAKTLVESMKRNGNLMELESYNIWLLGLV 341

Query: 289 TGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDI 348
               L  A+     MV + G  P+ + +N ++   C +     A  ++  M+ +G  PD 
Sbjct: 342 RNGKLLEAQLALKEMVDK-GIEPNIYSFNTVMDGLCKNGLISDARMIMGLMISSGIGPDT 400

Query: 349 QTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKY 408
            TY+ L        K+ +A+ + +EM++     N   C   +         + A K  + 
Sbjct: 401 VTYSTLLHGCCSTGKVLKANNILHEMMRRGCSPNTYTCNILLHSLWKEGRIFEAEKLLQK 460

Query: 409 MIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGM 444
           M E      + T N+++ GLC    L EAV+  +GM
Sbjct: 461 MNERSYDLDNVTCNIVIDGLCKSGKLDEAVEIVEGM 496



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 88/408 (21%), Positives = 162/408 (39%), Gaps = 45/408 (11%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKE-NVLSLATFASVFSSYVVADRVKDAITTFDVM 161
            +NL+++   K  + +     ++SMK+  N++ L ++       V   ++ +A      M
Sbjct: 297 TFNLMLEGFCKEGMLEEAKTLVESMKRNGNLMELESYNIWLLGLVRNGKLLEAQLALKEM 356

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRV-VDGRIKPDNDTYAILLEGWEKERDV 220
              G + ++++ N+++  +C++G   DA   + + +   I PD  TY+ LL G      V
Sbjct: 357 VDKGIEPNIYSFNTVMDGLCKNGLISDARMIMGLMISSGIGPDTVTYSTLLHGCCSTGKV 416

Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDG-IYETVNSLKRMMERGCNPGMTF 279
             A     EM +  G  P N    +  L +L K  +G I+E    L++M ER  +     
Sbjct: 417 LKANNILHEM-MRRGCSP-NTYTCNILLHSLWK--EGRIFEAEKLLQKMNERSYDLDNVT 472

Query: 280 FKLAFEE-CLTGQNLRGAEFIWG------AMVGRIGFR---------------PDTHMYN 317
             +  +  C +G+     E + G      A +G +G                 PD   Y+
Sbjct: 473 CNIVIDGLCKSGKLDEAVEIVEGMWIHGSAALGNLGNSFIGLVDSSSNGKKCLPDLITYS 532

Query: 318 MMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKN 377
           ++I+  C +     A K   EMV     PD   Y+       K  K+  A  +  +M K 
Sbjct: 533 IIINGLCKAGRLDEARKKFIEMVGKSLHPDSIIYDTFIHSFCKHGKISSAFRVLKDMEK- 591

Query: 378 ENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETG--------NLLVAGLC 429
                   C  +++ Y +S    +  K   + I     D+ E G        N +++ LC
Sbjct: 592 ------RGCNKSLQTY-NSLILGLGSKNQIFEIYGLLDDMKEKGITPNICTYNNMISCLC 644

Query: 430 DMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLK 477
           +   + +A      M +KGI     +   L +   KA    V +E+ +
Sbjct: 645 EGGRIKDATSLLDEMLQKGISPNISSFRLLIKAFCKASDFGVVKEVFE 692



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 65/277 (23%), Positives = 120/277 (43%), Gaps = 12/277 (4%)

Query: 107 VVDLLGKNCLFDAMWDAIKSMKKE---NVLSLATFASVFSSYVVADRVKDAITTFDVMEQ 163
           ++ +L K+ L D  +   +S + +   N   +  +  V  S +  D+V      +  M  
Sbjct: 85  LIRILAKSGLSDLAFSQFQSFRSQVPANPPPVYLYNMVLESSLREDKVDSFSWLYKDMVV 144

Query: 164 YGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDVAN 222
            G   + + LN L++ +C  G+  DA + F ++     +P+  ++ IL+ G+ +      
Sbjct: 145 AGVSPETYTLNLLIAGLCDSGRFEDAREVFDKMGVKGCRPNEFSFGILVRGYCRAGLSMR 204

Query: 223 AKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSL-KRMMERGCNPGMTFFK 281
           A +    M    G  P+ V  Y++ + +  +  +G  E    L +RM E G  P +  F 
Sbjct: 205 ALELLDGMG-SFGVQPNKV-IYNTLISSFCR--EGRNEEAERLVERMREDGLFPDVVTFN 260

Query: 282 LAFEE-CLTGQNLRGAEFIWGAMVG-RIGF-RPDTHMYNMMISLYCYSNETGAAMKLLDE 338
                 C  G+ L  +       +   +G  RP+   +N+M+  +C       A  L++ 
Sbjct: 261 SRISALCSAGKILEASRIFRDMQIDEELGLPRPNITTFNLMLEGFCKEGMLEEAKTLVES 320

Query: 339 MVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
           M  NG   ++++YNI    LV+  KL EA     EMV
Sbjct: 321 MKRNGNLMELESYNIWLLGLVRNGKLLEAQLALKEMV 357



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 61/275 (22%), Positives = 119/275 (43%), Gaps = 18/275 (6%)

Query: 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDV 160
           Y++N V+D L KN L       +  M    +     T++++        +V  A      
Sbjct: 366 YSFNTVMDGLCKNGLISDARMIMGLMISSGIGPDTVTYSTLLHGCCSTGKVLKANNILHE 425

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERD 219
           M + GC  + +  N LL ++ ++G+  +A + L+ ++ R    DN T  I+++G  K   
Sbjct: 426 MMRRGCSPNTYTCNILLHSLWKEGRIFEAEKLLQKMNERSYDLDNVTCNIVIDGLCKSGK 485

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTF 279
           +  A +    M I       N+   +S++        G+ ++ ++ K+     C P +  
Sbjct: 486 LDEAVEIVEGMWIHGSAALGNLG--NSFI--------GLVDSSSNGKK-----CLPDLIT 530

Query: 280 FKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEM 339
           + +          L  A   +  MVG+    PD+ +Y+  I  +C   +  +A ++L +M
Sbjct: 531 YSIIINGLCKAGRLDEARKKFIEMVGK-SLHPDSIIYDTFIHSFCKHGKISSAFRVLKDM 589

Query: 340 VYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
              G    +QTYN L   L    +++E  GL ++M
Sbjct: 590 EKRGCNKSLQTYNSLILGLGSKNQIFEIYGLLDDM 624


>gi|297844848|ref|XP_002890305.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336147|gb|EFH66564.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 860

 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 82/330 (24%), Positives = 143/330 (43%), Gaps = 15/330 (4%)

Query: 52  PTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLL 111
           P  E+ L    +R+      QVLK    + G A+ FF W   Q   KH  + +  +V  L
Sbjct: 316 PAAEEALQNLGLRIDAYQANQVLKQMNDY-GNALGFFYWLKRQPGFKHDGHTYTTMVGNL 374

Query: 112 GKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDV 170
           G+   F A+   +  M ++    +  T+  +  SY  A+ + +A+  F+ M++ GCK D 
Sbjct: 375 GRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDR 434

Query: 171 FALNSLLSAICRDG---KTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTF 227
               +L+    + G     +D +Q  R+  G + PD  TY++++    K   +  A K F
Sbjct: 435 VTYCTLIDIHAKAGFLDIAMDMYQ--RMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLF 492

Query: 228 GEMVIEVGWDPDNVPAYDSYLITL-LKGCDGIYETVNSLKRMMER-GCNPGMTFFKLAFE 285
            EMV     D    P   +Y I + L      Y++   L R M+  G  P    + +  E
Sbjct: 493 CEMV-----DQGCTPNLVTYNIMMDLHAKARNYQSALKLYRDMQNAGFEPDKVTYSIVME 547

Query: 286 ECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAF 345
                  L  AE ++  M  +  + PD  +Y +++ L+  +     A +    M++ G  
Sbjct: 548 VLGHCGYLEEAEAVFTEMQQK-NWIPDEPVYGLLVDLWGKAGNVEKAWQWYQAMLHAGLL 606

Query: 346 PDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
           P++ T N L    ++  K+ EA  L   M+
Sbjct: 607 PNVPTCNSLLSTFLRVNKIAEAYELLQNML 636



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 3/170 (1%)

Query: 308 GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEA 367
           GF+ D H Y  M+     + + GA  KLLDEMV +G  P+  TYN L     +   L EA
Sbjct: 359 GFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEA 418

Query: 368 SGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAG 427
             +FN+M +     +       + ++  +    +A+  ++ M     S  + T ++++  
Sbjct: 419 MNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINC 478

Query: 428 LCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLK 477
           L     LP A K    M ++G        + +  +  KAR    Y+  LK
Sbjct: 479 LGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARN---YQSALK 525


>gi|357499119|ref|XP_003619848.1| CCP [Medicago truncatula]
 gi|355494863|gb|AES76066.1| CCP [Medicago truncatula]
          Length = 556

 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 89/379 (23%), Positives = 164/379 (43%), Gaps = 44/379 (11%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           T  +V     +   V+ A+   D +   G   D     +L++ +C+ G++IDA+Q L+ +
Sbjct: 156 TLTTVMKGLCINGEVQKAMDFHDNVAAQGMLLDEVCYGTLINGLCKIGRSIDAFQLLQEM 215

Query: 197 DGRI-KPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
           +G++ KP+   Y ++++ + K+     A+  + + ++++G DPD +  Y S +    +  
Sbjct: 216 EGQVVKPNIVIYNMIIDSFCKDELTCKARDLYLK-IVDMGIDPD-ILTYTSLIRGFCR-- 271

Query: 256 DGIYETVNSLK-RMMERGCNPGMTFFKLAFEE-CLTGQNLRGAEFIWGAMVGRIGFRPDT 313
            G +  V  L   M+ +  NP +  F +  +  C  G+ +  A+ ++  MV R G +PD 
Sbjct: 272 TGQWGEVKQLMCEMVNKNINPNVYTFNVLIDAFCRKGKMIE-AQGMFNLMVKR-GQQPDI 329

Query: 314 HMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNE 373
             +N +IS +C       A KL D +   G  PD+ +Y IL     K +++ EA  LFNE
Sbjct: 330 VTFNTLISGHCLHGNVLEARKLFDTVFERGILPDVWSYTILIIGYCKCKRIDEAVSLFNE 389

Query: 374 MVKNENVLN--------HENCRAAVRVY-------MDSDDPY------------------ 400
           M     VL+           C++    Y       +++D P                   
Sbjct: 390 MRCKNMVLDIVLYSSLIDGLCKSGRISYAWELFSTINNDGPPPNVITYNILIDAFCKIQD 449

Query: 401 --VAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSK 458
             + I+ +K M     +    T N+L+ G C    + EA+     M  K +       + 
Sbjct: 450 IDMGIELFKLMCGKGLTPTVLTYNILINGYCKSKRIREAMNLLSVMQSKNLAPDSITYNS 509

Query: 459 LKQILIKARKEAVYEELLK 477
           L   L K+ + +   EL K
Sbjct: 510 LFDGLCKSGRISDAWELFK 528



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 123/287 (42%), Gaps = 28/287 (9%)

Query: 121 WDAIKSMKKENV-----LSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNS 175
           W  +K +  E V      ++ TF  +  ++    ++ +A   F++M + G + D+   N+
Sbjct: 275 WGEVKQLMCEMVNKNINPNVYTFNVLIDAFCRKGKMIEAQGMFNLMVKRGQQPDIVTFNT 334

Query: 176 LLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEV 234
           L+S  C  G  ++A +    V  R I PD  +Y IL+ G+ K + +  A   F EM    
Sbjct: 335 LISGHCLHGNVLEARKLFDTVFERGILPDVWSYTILIIGYCKCKRIDEAVSLFNEM--RC 392

Query: 235 GWDPDNVPAYDSYLITLLKGCD-----GIYETVNSLKRMMERGCNPGMTFFKLAFEECLT 289
                ++  Y S +  L K         ++ T+N+       G  P +  + +  +    
Sbjct: 393 KNMVLDIVLYSSLIDGLCKSGRISYAWELFSTINN------DGPPPNVITYNILIDAFCK 446

Query: 290 GQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQ 349
            Q++     ++  M G+ G  P    YN++I+ YC S     AM LL  M      PD  
Sbjct: 447 IQDIDMGIELFKLMCGK-GLTPTVLTYNILINGYCKSKRIREAMNLLSVMQSKNLAPDSI 505

Query: 350 TYNILFEFLVKGRKLWEASGLFNEM--------VKNENVLNHENCRA 388
           TYN LF+ L K  ++ +A  LF  M        V   NVL    C+A
Sbjct: 506 TYNSLFDGLCKSGRISDAWELFKVMHVGGPPVDVATYNVLLDAFCKA 552



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 60/247 (24%), Positives = 109/247 (44%), Gaps = 11/247 (4%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           S+  F ++  S V       AI+    M   G    +F L+  ++  C  G+   A+  L
Sbjct: 83  SVIQFNTIIGSVVKMKHCPVAISLLKQMVFKGVTPSIFTLSIWINCYCHLGEMGFAFSVL 142

Query: 194 RVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
            +V  R  +P+N T   +++G     +V  A   F + V   G   D V  Y     TL+
Sbjct: 143 GIVLKRGYQPNNITLTTVMKGLCINGEVQKAMD-FHDNVAAQGMLLDEV-CYG----TLI 196

Query: 253 KGCDGIYETVNSLKRMME---RGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGF 309
            G   I  ++++ + + E   +   P +  + +  +     +    A  ++  +V  +G 
Sbjct: 197 NGLCKIGRSIDAFQLLQEMEGQVVKPNIVIYNMIIDSFCKDELTCKARDLYLKIVD-MGI 255

Query: 310 RPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASG 369
            PD   Y  +I  +C + + G   +L+ EMV     P++ T+N+L +   +  K+ EA G
Sbjct: 256 DPDILTYTSLIRGFCRTGQWGEVKQLMCEMVNKNINPNVYTFNVLIDAFCRKGKMIEAQG 315

Query: 370 LFNEMVK 376
           +FN MVK
Sbjct: 316 MFNLMVK 322


>gi|356547448|ref|XP_003542124.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80550,
           mitochondrial-like [Glycine max]
          Length = 445

 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 104/396 (26%), Positives = 173/396 (43%), Gaps = 50/396 (12%)

Query: 84  AVKFFRW---SAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKE--NVLSLATF 138
           A++FF W   S  Q +  HS   +NL++D+LGK   F   WD I+ M     +  + ATF
Sbjct: 51  ALEFFNWVEESHSQFH--HSTDTFNLMLDILGKFFEFKLCWDLIRRMNAHPSSPPNHATF 108

Query: 139 ASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDG 198
             +F  YV A  V DAI TF+ + ++  K D  + ++LL A+C     ++A   L   D 
Sbjct: 109 RLMFKRYVSAHSVNDAIDTFNRLGEFNLK-DHTSFSNLLDALCEYKHVLEAQDLLFGNDN 167

Query: 199 RIK----PDNDT--YAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
           R+     P  +T  + ++L GW K    +   + F E + + G   D + +Y  Y+  L 
Sbjct: 168 RVTLSVDPIGNTKIHNMVLRGWFKLGWWSKCNE-FWEEMDKKGVHKD-LHSYSIYMDILC 225

Query: 253 KGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD 312
           KG    ++ V   K + ++G    +  + +          +  +  ++  M   +G +P 
Sbjct: 226 KGGKP-WKAVKLFKEIKKKGFKLDVVVYNIVIRAIGLSHGVDFSIRVFREM-KELGIKPT 283

Query: 313 THMYNMMISLYCYSNETGAAMKLLDE-MVYNGAFPDIQTYNILFEFLVKGRKLWEASGLF 371
              YN +I L C       A+ LL   M  +G  P   +Y+  F  + K +++     +F
Sbjct: 284 VVTYNTLIRLLCDCYRHKEALALLRTIMPSDGCHPTAVSYHCFFASMEKPKQI---LAMF 340

Query: 372 NEMVKNENVLNHENCRAAVRVYMDSDDPYVAI--KF------------WKYMIENHCSDL 417
           +EMV+           + VR  MD+   YV +  KF            W  M +  CS  
Sbjct: 341 DEMVE-----------SGVRPTMDT---YVMLLNKFGRWGFLRPVFMVWNKMKQLGCSPD 386

Query: 418 SETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTP 453
           +   N L+  L D  ++  A KY + M  KG+   P
Sbjct: 387 AAAYNALIDALVDKALIDMARKYDEEMLAKGLSPKP 422



 Score = 44.3 bits (103), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 55/256 (21%), Positives = 103/256 (40%), Gaps = 25/256 (9%)

Query: 238 PDNVPAYDSYLITLLK--GCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRG 295
           P + P + ++ +   +      + + +++  R+ E       +F  L    C     L  
Sbjct: 99  PSSPPNHATFRLMFKRYVSAHSVNDAIDTFNRLGEFNLKDHTSFSNLLDALCEYKHVLEA 158

Query: 296 AEFIWG------AMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQ 349
            + ++G        V  IG   +T ++NM++  +          +  +EM   G   D+ 
Sbjct: 159 QDLLFGNDNRVTLSVDPIG---NTKIHNMVLRGWFKLGWWSKCNEFWEEMDKKGVHKDLH 215

Query: 350 TYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYM 409
           +Y+I  + L KG K W+A  LF E+ K    L+       +R    S     +I+ ++ M
Sbjct: 216 SYSIYMDILCKGGKPWKAVKLFKEIKKKGFKLDVVVYNIVIRAIGLSHGVDFSIRVFREM 275

Query: 410 IENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKG-MAEKGIQVTPF-------ALSKLKQ 461
            E        T N L+  LCD +   EA+   +  M   G   T         ++ K KQ
Sbjct: 276 KELGIKPTVVTYNTLIRLLCDCYRHKEALALLRTIMPSDGCHPTAVSYHCFFASMEKPKQ 335

Query: 462 ILIKARKEAVYEELLK 477
           IL      A+++E+++
Sbjct: 336 IL------AMFDEMVE 345


>gi|255572426|ref|XP_002527150.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533489|gb|EEF35232.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 874

 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 83/341 (24%), Positives = 140/341 (41%), Gaps = 32/341 (9%)

Query: 138 FASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVD 197
           + ++ SS+    +  DA    D M + G    V   NS +SA+C  GK ++A +  R + 
Sbjct: 220 YNTLISSFCKEGKTHDAEKLVDKMREDGLVPHVETFNSRISALCGSGKILEASRIFRDMQ 279

Query: 198 -----GRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
                G   P+  TY ++L G+ KE  +  AK     M     +   N+ +Y+ +L+ L+
Sbjct: 280 IDEELGLPHPNVITYKLMLMGFCKEGMLEEAKTLVDTMKRNANFI--NLESYNIWLLGLI 337

Query: 253 KGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD 312
           +    + E    LK M+  G  P +  + +  +       L  A  + G M+ R G  PD
Sbjct: 338 RN-GKLLEAWIVLKEMLGIGIEPDIYSYNIVMDGLCKNGMLSDARMLMGLMI-RNGILPD 395

Query: 313 THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFN 372
           T  Y+ ++  YC   +   A  LL EM+ N   P+  T N+L   L K  ++ EA  L  
Sbjct: 396 TVTYSTLLHGYCSKGKVFEANNLLHEMISNNCSPNTYTCNVLLHSLWKEGRISEAENLLQ 455

Query: 373 EMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGN---------- 422
           +M +    ++   C   +    ++     AI+    M  +  + L   GN          
Sbjct: 456 KMNEKGYGVDTVTCNIIINALCNNGQLDKAIEIVNGMWTHGSAALGNLGNSFIGLVDDTI 515

Query: 423 -------------LLVAGLCDMHMLPEAVKYAKGMAEKGIQ 450
                         +++GLC    L +A K    M  KG+Q
Sbjct: 516 SGKKCTPDLVTYSTIISGLCKAGRLDDAKKKFIEMMSKGLQ 556



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 76/316 (24%), Positives = 131/316 (41%), Gaps = 7/316 (2%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RV 195
           TF  +   Y  A      +     M   G   +    N+L+S+ C++GKT DA + + ++
Sbjct: 184 TFGILVRGYCRAGLASKGLELLGQMRTMGILPNNVLYNTLISSFCKEGKTHDAEKLVDKM 243

Query: 196 VDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVI--EVGWDPDNVPAYDSYLITLLK 253
            +  + P  +T+   +        +  A + F +M I  E+G    NV  Y   L+   K
Sbjct: 244 REDGLVPHVETFNSRISALCGSGKILEASRIFRDMQIDEELGLPHPNVITYKLMLMGFCK 303

Query: 254 GCDGIYETVNSLKRMMERGCN-PGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD 312
             +G+ E   +L   M+R  N   +  + +     +    L  A  +   M+G IG  PD
Sbjct: 304 --EGMLEEAKTLVDTMKRNANFINLESYNIWLLGLIRNGKLLEAWIVLKEMLG-IGIEPD 360

Query: 313 THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFN 372
            + YN+++   C +     A  L+  M+ NG  PD  TY+ L        K++EA+ L +
Sbjct: 361 IYSYNIVMDGLCKNGMLSDARMLMGLMIRNGILPDTVTYSTLLHGYCSKGKVFEANNLLH 420

Query: 373 EMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMH 432
           EM+ N    N   C   +           A    + M E      + T N+++  LC+  
Sbjct: 421 EMISNNCSPNTYTCNVLLHSLWKEGRISEAENLLQKMNEKGYGVDTVTCNIIINALCNNG 480

Query: 433 MLPEAVKYAKGMAEKG 448
            L +A++   GM   G
Sbjct: 481 QLDKAIEIVNGMWTHG 496



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 60/239 (25%), Positives = 102/239 (42%), Gaps = 36/239 (15%)

Query: 150 RVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ------------------ 191
           R+ +A      M + G   D    N +++A+C +G+   A +                  
Sbjct: 446 RISEAENLLQKMNEKGYGVDTVTCNIIINALCNNGQLDKAIEIVNGMWTHGSAALGNLGN 505

Query: 192 -FLRVVDGRIK-----PDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYD 245
            F+ +VD  I      PD  TY+ ++ G  K   + +AKK F EM+ + G  PD+   YD
Sbjct: 506 SFIGLVDDTISGKKCTPDLVTYSTIISGLCKAGRLDDAKKKFIEMMSK-GLQPDSA-IYD 563

Query: 246 SYLITLLKGCDG-IYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMV 304
           +++ +  +  +G I      LK M +RGCN  +      +   + G   +   F    ++
Sbjct: 564 TFIHSFCR--EGKISSAFQVLKDMEKRGCNKTLQ----TYNSLILGLGSKNQIFELYGLI 617

Query: 305 GRI---GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVK 360
             +   G  PD   YN M++  C       A  +LDEM+  G  P+I ++ IL +   K
Sbjct: 618 DEMREKGVSPDVCTYNHMLNCLCEGGRINDAPSVLDEMLQKGISPNISSFRILIKAFCK 676



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 63/220 (28%), Positives = 101/220 (45%), Gaps = 18/220 (8%)

Query: 175 SLLSAICRDG---KTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMV 231
           +L++ + + G   K I  ++ LR      +P    Y +LL+   +E  V      + +MV
Sbjct: 80  NLVTVLAKSGFFNKAISHFKSLRSNFPEKQPSIYLYNVLLKSCIRENRVELVSWLYKDMV 139

Query: 232 IEVGWDPDNVPAYDSYLITLLKG--CD-GIYETVNSL-KRMMERGCNPG-MTFFKLAFEE 286
           +          + ++Y   LL G  CD G  E    L  +M  RGC P   TF  L    
Sbjct: 140 LAR-------VSPEAYTFNLLIGLLCDSGHLEDARELFDKMPARGCEPNEFTFGILVRGY 192

Query: 287 CLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFP 346
           C  G   +G E +    +  +G  P+  +YN +IS +C   +T  A KL+D+M  +G  P
Sbjct: 193 CRAGLASKGLELL--GQMRTMGILPNNVLYNTLISSFCKEGKTHDAEKLVDKMREDGLVP 250

Query: 347 DIQTYNILFEFLVKGRKLWEASGLFNEMVKNENV-LNHEN 385
            ++T+N     L    K+ EAS +F +M  +E + L H N
Sbjct: 251 HVETFNSRISALCGSGKILEASRIFRDMQIDEELGLPHPN 290



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 63/284 (22%), Positives = 114/284 (40%), Gaps = 39/284 (13%)

Query: 121 WDAIKSMKKENVLSLATFASVFSSYVVAD------RVKDAITTFDVMEQYGCKHDVFALN 174
           W  +K M     L +     ++S  +V D       + DA     +M + G   D    +
Sbjct: 346 WIVLKEM-----LGIGIEPDIYSYNIVMDGLCKNGMLSDARMLMGLMIRNGILPDTVTYS 400

Query: 175 SLLSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIE 233
           +LL   C  GK  +A   L  ++     P+  T  +LL    KE  ++ A+    +M  E
Sbjct: 401 TLLHGYCSKGKVFEANNLLHEMISNNCSPNTYTCNVLLHSLWKEGRISEAENLLQKMN-E 459

Query: 234 VGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGC----NPGMTFFKLAFEECLT 289
            G+  D V    + +I  L     + + +  +  M   G     N G +F  L  ++ ++
Sbjct: 460 KGYGVDTVTC--NIIINALCNNGQLDKAIEIVNGMWTHGSAALGNLGNSFIGLV-DDTIS 516

Query: 290 GQNLRGAEFIWGAMV------GRI-------------GFRPDTHMYNMMISLYCYSNETG 330
           G+        +  ++      GR+             G +PD+ +Y+  I  +C   +  
Sbjct: 517 GKKCTPDLVTYSTIISGLCKAGRLDDAKKKFIEMMSKGLQPDSAIYDTFIHSFCREGKIS 576

Query: 331 AAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
           +A ++L +M   G    +QTYN L   L    +++E  GL +EM
Sbjct: 577 SAFQVLKDMEKRGCNKTLQTYNSLILGLGSKNQIFELYGLIDEM 620


>gi|357439843|ref|XP_003590199.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479247|gb|AES60450.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 834

 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 87/352 (24%), Positives = 160/352 (45%), Gaps = 15/352 (4%)

Query: 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR 194
           + T+ ++     +  +VK+++   D +   G K D  +  +L++ +C+ G+T  A + LR
Sbjct: 119 IITYTTLIRGLCLNGQVKESLNFHDRLVSQGIKLDHVSYGTLINGLCKIGQTGPALRLLR 178

Query: 195 VVDGRI-KPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDS--YLITL 251
            ++G I +PD   Y  +++G  K++ V +A   + EM  E    P NV  Y S  Y   +
Sbjct: 179 KIEGEICRPDVVMYNTIIDGLCKDKLVRDAFDLYCEM-FEKRVFP-NVVTYTSLIYGFCI 236

Query: 252 LKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRP 311
           +   D  +  +N    M+ +  NP +  F    +       +R A+ +   M+ + G  P
Sbjct: 237 VGQLDKAFGLLN---EMVLKNVNPNVCTFNTLVDGLCKEGKMREAKSLVAVMM-KEGVGP 292

Query: 312 DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLF 371
           D   YN ++  Y    E G A  + + M   G   D+ +Y+++   L K + L EA  LF
Sbjct: 293 DVFTYNALMDGYFLVKEAGKAKNVFNIMAQMGVTCDVHSYSVMISGLSKMKMLDEAMDLF 352

Query: 372 NEMVKNENVLNHENCRAA-VRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCD 430
             M +NENV+      ++ +     S     A+K+   M +        T   L+  LC 
Sbjct: 353 EGM-RNENVIPDVVAYSSLIDGLCKSGRINSALKYVDEMHDRGQPPNVITYTSLIDALCK 411

Query: 431 MHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARK----EAVYEELLKK 478
            H + +A+   K + ++GIQ   +  + L   L K  +    + V+++LL K
Sbjct: 412 SHQVDKAIALLKKIKDQGIQANMYTYNILVDGLCKDGRLTDAQKVFQDLLMK 463



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 81/345 (23%), Positives = 143/345 (41%), Gaps = 25/345 (7%)

Query: 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FL 193
           +  F  +  S V        I  F  ME +G + +   LN L+++ C   +   A+  F 
Sbjct: 49  IIKFGKILGSLVKTKHYPIVIHLFQRMELHGIQSNYITLNILINSYCHLRQINSAFSVFA 108

Query: 194 RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLK 253
           +++    +PD  TY  L+ G      V  +   F + ++  G   D+V +Y     TL+ 
Sbjct: 109 KILKLGYQPDIITYTTLIRGLCLNGQVKESL-NFHDRLVSQGIKLDHV-SYG----TLIN 162

Query: 254 GCDGIYET---VNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFR 310
           G   I +T   +  L+++    C P +  +    +     + +R A  ++  M  +  F 
Sbjct: 163 GLCKIGQTGPALRLLRKIEGEICRPDVVMYNTIIDGLCKDKLVRDAFDLYCEMFEKRVF- 221

Query: 311 PDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGL 370
           P+   Y  +I  +C   +   A  LL+EMV     P++ T+N L + L K  K+ EA  L
Sbjct: 222 PNVVTYTSLIYGFCIVGQLDKAFGLLNEMVLKNVNPNVCTFNTLVDGLCKEGKMREAKSL 281

Query: 371 FNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIK-------FWKYMIENHCSDLSETGNL 423
              M+K       E     V  Y    D Y  +K        +  M +   +    + ++
Sbjct: 282 VAVMMK-------EGVGPDVFTYNALMDGYFLVKEAGKAKNVFNIMAQMGVTCDVHSYSV 334

Query: 424 LVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARK 468
           +++GL  M ML EA+   +GM  + +     A S L   L K+ +
Sbjct: 335 MISGLSKMKMLDEAMDLFEGMRNENVIPDVVAYSSLIDGLCKSGR 379



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 70/305 (22%), Positives = 135/305 (44%), Gaps = 8/305 (2%)

Query: 79  SHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLAT 137
              GPA++  R    ++  +     +N ++D L K+ L    +D    M ++ V  ++ T
Sbjct: 168 GQTGPALRLLRKIEGEIC-RPDVVMYNTIIDGLCKDKLVRDAFDLYCEMFEKRVFPNVVT 226

Query: 138 FASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRV-V 196
           + S+   + +  ++  A    + M       +V   N+L+  +C++GK  +A   + V +
Sbjct: 227 YTSLIYGFCIVGQLDKAFGLLNEMVLKNVNPNVCTFNTLVDGLCKEGKMREAKSLVAVMM 286

Query: 197 DGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD 256
              + PD  TY  L++G+   ++   AK  F  M  ++G   D V +Y S +I+ L    
Sbjct: 287 KEGVGPDVFTYNALMDGYFLVKEAGKAKNVFNIMA-QMGVTCD-VHSY-SVMISGLSKMK 343

Query: 257 GIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMY 316
            + E ++  + M      P +  +    +       +  A      M  R G  P+   Y
Sbjct: 344 MLDEAMDLFEGMRNENVIPDVVAYSSLIDGLCKSGRINSALKYVDEMHDR-GQPPNVITY 402

Query: 317 NMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV- 375
             +I   C S++   A+ LL ++   G   ++ TYNIL + L K  +L +A  +F +++ 
Sbjct: 403 TSLIDALCKSHQVDKAIALLKKIKDQGIQANMYTYNILVDGLCKDGRLTDAQKVFQDLLM 462

Query: 376 KNENV 380
           K  NV
Sbjct: 463 KGHNV 467



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 62/277 (22%), Positives = 117/277 (42%), Gaps = 10/277 (3%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASVFSSYVVADRVKDAITTFDVM 161
            +N +VD L K          +  M KE V   + T+ ++   Y +      A   F++M
Sbjct: 261 TFNTLVDGLCKEGKMREAKSLVAVMMKEGVGPDVFTYNALMDGYFLVKEAGKAKNVFNIM 320

Query: 162 EQYGCKHDVFALNSLLSAICRD---GKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKER 218
            Q G   DV + + ++S + +     + +D ++ +R  +  + PD   Y+ L++G  K  
Sbjct: 321 AQMGVTCDVHSYSVMISGLSKMKMLDEAMDLFEGMR--NENVIPDVVAYSSLIDGLCKSG 378

Query: 219 DVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMT 278
            + +A K   EM       P NV  Y S +  L K    + + +  LK++ ++G    M 
Sbjct: 379 RINSALKYVDEM--HDRGQPPNVITYTSLIDALCKS-HQVDKAIALLKKIKDQGIQANMY 435

Query: 279 FFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDE 338
            + +  +       L  A+ ++  ++ + G   D   Y++MI+  C  +    A+ LL +
Sbjct: 436 TYNILVDGLCKDGRLTDAQKVFQDLLMK-GHNVDVVTYSIMINGLCKESLFDEALTLLSK 494

Query: 339 MVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
           M   G  PD   Y  +     +     +A  L  EM+
Sbjct: 495 MEDKGCVPDAIAYETIINAFFEKDMNDKAEKLLREMI 531


>gi|225439358|ref|XP_002269283.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g06400, mitochondrial-like [Vitis vinifera]
          Length = 1048

 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 92/432 (21%), Positives = 180/432 (41%), Gaps = 12/432 (2%)

Query: 25  TFASHLDVPNLPPTIKTLCEII-ANTPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGP 83
           T  SH    ++ P +  + +I+ A+  + ++E+ L+K+      E VE+VLK  +  P  
Sbjct: 128 TQTSHSGGNDVSPMVDEITKIVRADIGTGSMEEKLEKSGFVFDSEVVEKVLKRCFKVPHL 187

Query: 84  AVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASVF 142
           A++FF W  ++    H+   +N ++ + G+   F  +   I  M+++     + T+  + 
Sbjct: 188 ALRFFNWVKFRNGGCHTTRTYNTMLYIAGEAKEFGLVEKLIGEMEEKGCKRDIKTWTILI 247

Query: 143 SSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGRIK 201
           S Y  A  +  A+   + M + GC+ DV A   L+ ++C   K   A +F + +V   + 
Sbjct: 248 SHYGKAKLIGKALLILEKMWKSGCEPDVAAYMILIRSLCNAQKADIALEFYKEMVQKEMG 307

Query: 202 PDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDG--IY 259
            D   Y +LL       D+A  +    +M+         +P  D +   L   C    I 
Sbjct: 308 LDMSLYELLLTCLAGSGDIAGVQLVADDMI-----RRSQIPERDVFSCMLKSFCIAGRIR 362

Query: 260 ETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMM 319
           E +  ++ + ++        F+   +       +  A  I   M  R     D  +Y ++
Sbjct: 363 EALELIRDLNDKNLTLEPNDFETLVKGLCRADRITDAAEIVDIMKKRKVV--DAKVYGII 420

Query: 320 ISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNEN 379
           IS Y   N+   A  +L  M  +G  P I TY  L + L +  +  +   L++EM++   
Sbjct: 421 ISGYLRRNDIPKAFDVLQTMTESGYLPTISTYTELMQHLFRLNEYQKGCKLYDEMLERGV 480

Query: 380 VLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVK 439
             +     A V  ++  +  + A K +  M E       ++ ++ +  LC +    E +K
Sbjct: 481 EPDSVAITAMVAGHVRQNHIFEAWKVFNSMQERGIRATWKSYSVFIKELCKISRTDEVIK 540

Query: 440 YAKGMAEKGIQV 451
               M    I +
Sbjct: 541 VLNEMQASKIII 552



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 85/414 (20%), Positives = 161/414 (38%), Gaps = 85/414 (20%)

Query: 29   HLDVPNLPPT-----IKTLCEIIANTPS-PTVEDVLDKTLIRVSQETVEQVLKFSYSHPG 82
            HL V +LP T     ++ +C I++ +     +E+ L+K  ++ + + V ++L+    H  
Sbjct: 620  HL-VEHLPKTYNEQDLQEICRILSTSMDWCLIEEALEKCTVQFTSQLVVEILRSCSLHGH 678

Query: 83   PAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKE------------ 130
             A+ FF W   +    H+   +N+ + + G +  F +M +    M+++            
Sbjct: 679  AALLFFSWVGKRDGYSHTTETYNMGIKISGCSKNFRSMRNLFFEMRRKGHPVTPDTWTIM 738

Query: 131  ---------NVLSLATFA-----------SVFSSYVV------ADRVKDAITTFDVMEQY 164
                       ++L  FA           S +   ++        +V +AI TF  M + 
Sbjct: 739  IMQYGRAGLTEIALRNFAEMKANDCKPNGSTYKYLIICLCGRKGRKVDEAIKTFLEMIRA 798

Query: 165  GCKHDVFALNSLLSAICRDGKTIDAW-------------------------------QFL 193
            G   D   + S L  +C  GK +DA                                + L
Sbjct: 799  GYVPDKELVESYLKCLCEVGKLLDARRCTEALCKLGFTIPLSYSLYIRALCRAGRLEEAL 858

Query: 194  RVVDG----RIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLI 249
             +VD     R+  D   Y  L+ G  +   +  A +    M  ++G  P  V  Y S ++
Sbjct: 859  ALVDEVGPERVTLDQYIYGSLVHGLLRRGRLKEALEKVDSMK-QIGIHP-TVHVYTSLIV 916

Query: 250  TLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGF 309
               K    + + + + ++M E GC P +  +       +   N   A  ++G +  +  F
Sbjct: 917  HFFKE-KQMRKALETFQKMKEEGCEPTIVTYSALIRGHMAMGNFVDARNVFGLLQLKGPF 975

Query: 310  RPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPD-IQTYNILFEFLVKGR 362
             PD   Y+M IS  C   ++  A++LL EM+ +G  P  I    ++F    +G+
Sbjct: 976  -PDFKTYSMFISCLCKVGKSEEALQLLSEMLDSGIIPSTINFRTVMFGLNREGK 1028



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/240 (20%), Positives = 98/240 (40%), Gaps = 16/240 (6%)

Query: 127 MKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKT 186
           +++  +     F+ +  S+ +A R+++A+     +       +     +L+  +CR  + 
Sbjct: 337 IRRSQIPERDVFSCMLKSFCIAGRIREALELIRDLNDKNLTLEPNDFETLVKGLCRADRI 396

Query: 187 IDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDS 246
            DA + + ++  R   D   Y I++ G+ +  D+  A      M  E G+ P  +  Y  
Sbjct: 397 TDAAEIVDIMKKRKVVDAKVYGIIISGYLRRNDIPKAFDVLQTMT-ESGYLP-TISTYTE 454

Query: 247 YLITLL------KGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIW 300
            +  L       KGC  +Y+       M+ERG  P            +   ++  A  ++
Sbjct: 455 LMQHLFRLNEYQKGCK-LYD------EMLERGVEPDSVAITAMVAGHVRQNHIFEAWKVF 507

Query: 301 GAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVK 360
            +M  R G R     Y++ I   C  + T   +K+L+EM  +      + +N +  +L K
Sbjct: 508 NSMQER-GIRATWKSYSVFIKELCKISRTDEVIKVLNEMQASKIIIGDEVFNWVISYLEK 566


>gi|15221893|ref|NP_173324.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|42571539|ref|NP_973860.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75151479|sp|Q8GYP6.1|PPR49_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g18900
 gi|26450017|dbj|BAC42129.1| unknown protein [Arabidopsis thaliana]
 gi|28827402|gb|AAO50545.1| unknown protein [Arabidopsis thaliana]
 gi|332191657|gb|AEE29778.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332191658|gb|AEE29779.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 860

 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 83/349 (23%), Positives = 141/349 (40%), Gaps = 44/349 (12%)

Query: 52  PTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLL 111
           P  E+ L    +R+      QVLK   +  G A+ FF W   Q   KH  + +  +V  L
Sbjct: 316 PAAEEALQNLGLRIDAYQANQVLK-QMNDYGNALGFFYWLKRQPGFKHDGHTYTTMVGNL 374

Query: 112 GKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDV 170
           G+   F A+   +  M ++    +  T+  +  SY  A+ + +A+  F+ M++ GCK D 
Sbjct: 375 GRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDR 434

Query: 171 FALNSLLSAICRDG---KTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTF 227
               +L+    + G     +D +Q  R+  G + PD  TY++++    K   +  A K F
Sbjct: 435 VTYCTLIDIHAKAGFLDIAMDMYQ--RMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLF 492

Query: 228 GEMVIE----------------------------------VGWDPDNVPAYDSYLITLLK 253
            EMV +                                   G++PD V    S ++ +L 
Sbjct: 493 CEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTY--SIVMEVLG 550

Query: 254 GCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDT 313
            C  + E       M ++   P    + L  +      N+  A   + AM+   G RP+ 
Sbjct: 551 HCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQWYQAML-HAGLRPNV 609

Query: 314 HMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGR 362
              N ++S +   N+   A +LL  M+  G  P +QTY +L      GR
Sbjct: 610 PTCNSLLSTFLRVNKIAEAYELLQNMLALGLRPSLQTYTLLLSCCTDGR 658



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 92/216 (42%), Gaps = 5/216 (2%)

Query: 159 DVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKER 218
           + ++  G + D +  N +L  +   G  +  + +L+   G  K D  TY  ++    + +
Sbjct: 320 EALQNLGLRIDAYQANQVLKQMNDYGNALGFFYWLKRQPG-FKHDGHTYTTMVGNLGRAK 378

Query: 219 DVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMT 278
                 K   EMV + G  P+ V  Y+  LI      + + E +N   +M E GC P   
Sbjct: 379 QFGAINKLLDEMVRD-GCQPNTV-TYNR-LIHSYGRANYLNEAMNVFNQMQEAGCKPDRV 435

Query: 279 FFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDE 338
            +    +       L  A  ++  M    G  PDT  Y+++I+    +    AA KL  E
Sbjct: 436 TYCTLIDIHAKAGFLDIAMDMYQRMQAG-GLSPDTFTYSVIINCLGKAGHLPAAHKLFCE 494

Query: 339 MVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
           MV  G  P++ TYNI+ +   K R    A  L+ +M
Sbjct: 495 MVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDM 530



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 3/170 (1%)

Query: 308 GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEA 367
           GF+ D H Y  M+     + + GA  KLLDEMV +G  P+  TYN L     +   L EA
Sbjct: 359 GFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEA 418

Query: 368 SGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAG 427
             +FN+M +     +       + ++  +    +A+  ++ M     S  + T ++++  
Sbjct: 419 MNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINC 478

Query: 428 LCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLK 477
           L     LP A K    M ++G        + +  +  KAR    Y+  LK
Sbjct: 479 LGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARN---YQNALK 525


>gi|414882130|tpg|DAA59261.1| TPA: hypothetical protein ZEAMMB73_845952 [Zea mays]
          Length = 1603

 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 93/373 (24%), Positives = 157/373 (42%), Gaps = 16/373 (4%)

Query: 94   QLNDKHSPYAWN-LVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRV 151
            +L+ K S + +N L+  LL + C+   ++D    M+ E ++ ++ T+ ++    + +  V
Sbjct: 1183 RLSKKASSFTYNPLITGLLARGCV-KKVYDLQLEMENEGIMPTVVTYNAMIHGLLQSGLV 1241

Query: 152  KDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAIL 210
            + A   F  M   G   DV   NSLL+  C+ G   +A   F  +    + P   TY IL
Sbjct: 1242 EAAQVKFAEMRAMGLLPDVITYNSLLNGYCKAGNLKEALLLFGDLRRAGLAPTVLTYNIL 1301

Query: 211  LEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNS---LKR 267
            ++G+ +  D+  A+    E + E G  P NV  Y      L+KG   +     +      
Sbjct: 1302 IDGYCRLGDLEEAR-ILKEEMGEQGCLP-NVCTY----TILMKGSLNVRSLAMAREFFDE 1355

Query: 268  MMERGCNPGMTFFKLAF-EECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYS 326
            M+ +G  P    +      E + G   R  E     M+   G   DT  YN++I   C +
Sbjct: 1356 MLSKGLQPDCFAYNTRICAELILGDIARAFELREVLMLE--GISSDTVTYNILIHGLCKT 1413

Query: 327  NETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENC 386
                 A +L  +MV NG  PD  TY  L     +   L EA  +FN M+ +  + +    
Sbjct: 1414 GNLKDAKELQMKMVSNGLQPDCITYTCLIHAHCERGLLREARKIFNNMISDGLLPSAVTF 1473

Query: 387  RAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAE 446
               +  Y    + Y A  +++ M+E        T N+L+  LC M     A  +   M E
Sbjct: 1474 TVIIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRMGRTQLASHHFHEMLE 1533

Query: 447  KGIQVTPFALSKL 459
            +G+    +  + L
Sbjct: 1534 RGLVANKYTYTLL 1546



 Score = 55.1 bits (131), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 47/202 (23%), Positives = 87/202 (43%), Gaps = 11/202 (5%)

Query: 159  DVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQF-LRVVDGRIKPDNDTYAILLEGWEKE 217
            +V+   G   D    N L+  +C+ G   DA +  +++V   ++PD  TY  L+    + 
Sbjct: 1389 EVLMLEGISSDTVTYNILIHGLCKTGNLKDAKELQMKMVSNGLQPDCITYTCLIHAHCER 1448

Query: 218  RDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC--DGIYETVNSLKRMMERGCNP 275
              +  A+K F  M+ +       +P+  ++ + +   C    +Y      ++M+E G  P
Sbjct: 1449 GLLREARKIFNNMISD-----GLLPSAVTFTVIIHAYCRRGNLYSAYGWFRKMLEEGVEP 1503

Query: 276  G-MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMK 334
              +T+  L    C  G+  + A   +  M+ R G   + + Y ++I   C       AM+
Sbjct: 1504 NEITYNVLIHALCRMGRT-QLASHHFHEMLER-GLVANKYTYTLLIDGNCKVGNWEDAMR 1561

Query: 335  LLDEMVYNGAFPDIQTYNILFE 356
               EM  NG  PD  T+  L +
Sbjct: 1562 FYFEMHQNGIHPDYLTHKALLK 1583



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 58/224 (25%), Positives = 90/224 (40%), Gaps = 11/224 (4%)

Query: 158  FDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV--DGRIKPDNDTYAILLEGWE 215
            FD M   G + D FA N+ + A    G    A++   V+  +G I  D  TY IL+ G  
Sbjct: 1353 FDEMLSKGLQPDCFAYNTRICAELILGDIARAFELREVLMLEG-ISSDTVTYNILIHGLC 1411

Query: 216  KERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDG--IYETVNSLKRMMERGC 273
            K  ++ +AK+   +MV   G  PD +    +Y   +   C+   + E       M+  G 
Sbjct: 1412 KTGNLKDAKELQMKMVSN-GLQPDCI----TYTCLIHAHCERGLLREARKIFNNMISDGL 1466

Query: 274  NPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAM 333
             P    F +         NL  A + W   +   G  P+   YN++I   C    T  A 
Sbjct: 1467 LPSAVTFTVIIHAYCRRGNLYSA-YGWFRKMLEEGVEPNEITYNVLIHALCRMGRTQLAS 1525

Query: 334  KLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKN 377
                EM+  G   +  TY +L +   K     +A   + EM +N
Sbjct: 1526 HHFHEMLERGLVANKYTYTLLIDGNCKVGNWEDAMRFYFEMHQN 1569


>gi|334182677|ref|NP_001185030.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332191659|gb|AEE29780.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 886

 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 83/349 (23%), Positives = 141/349 (40%), Gaps = 44/349 (12%)

Query: 52  PTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLL 111
           P  E+ L    +R+      QVLK    + G A+ FF W   Q   KH  + +  +V  L
Sbjct: 316 PAAEEALQNLGLRIDAYQANQVLKQMNDY-GNALGFFYWLKRQPGFKHDGHTYTTMVGNL 374

Query: 112 GKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDV 170
           G+   F A+   +  M ++    +  T+  +  SY  A+ + +A+  F+ M++ GCK D 
Sbjct: 375 GRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDR 434

Query: 171 FALNSLLSAICRDG---KTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTF 227
               +L+    + G     +D +Q  R+  G + PD  TY++++    K   +  A K F
Sbjct: 435 VTYCTLIDIHAKAGFLDIAMDMYQ--RMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLF 492

Query: 228 GEMVIE----------------------------------VGWDPDNVPAYDSYLITLLK 253
            EMV +                                   G++PD V    S ++ +L 
Sbjct: 493 CEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTY--SIVMEVLG 550

Query: 254 GCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDT 313
            C  + E       M ++   P    + L  +      N+  A   + AM+   G RP+ 
Sbjct: 551 HCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQWYQAML-HAGLRPNV 609

Query: 314 HMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGR 362
              N ++S +   N+   A +LL  M+  G  P +QTY +L      GR
Sbjct: 610 PTCNSLLSTFLRVNKIAEAYELLQNMLALGLRPSLQTYTLLLSCCTDGR 658



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 92/216 (42%), Gaps = 5/216 (2%)

Query: 159 DVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKER 218
           + ++  G + D +  N +L  +   G  +  + +L+   G  K D  TY  ++    + +
Sbjct: 320 EALQNLGLRIDAYQANQVLKQMNDYGNALGFFYWLKRQPG-FKHDGHTYTTMVGNLGRAK 378

Query: 219 DVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMT 278
                 K   EMV + G  P+ V  Y+  LI      + + E +N   +M E GC P   
Sbjct: 379 QFGAINKLLDEMVRD-GCQPNTV-TYNR-LIHSYGRANYLNEAMNVFNQMQEAGCKPDRV 435

Query: 279 FFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDE 338
            +    +       L  A  ++  M    G  PDT  Y+++I+    +    AA KL  E
Sbjct: 436 TYCTLIDIHAKAGFLDIAMDMYQRMQAG-GLSPDTFTYSVIINCLGKAGHLPAAHKLFCE 494

Query: 339 MVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
           MV  G  P++ TYNI+ +   K R    A  L+ +M
Sbjct: 495 MVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDM 530



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 3/170 (1%)

Query: 308 GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEA 367
           GF+ D H Y  M+     + + GA  KLLDEMV +G  P+  TYN L     +   L EA
Sbjct: 359 GFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEA 418

Query: 368 SGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAG 427
             +FN+M +     +       + ++  +    +A+  ++ M     S  + T ++++  
Sbjct: 419 MNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINC 478

Query: 428 LCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLK 477
           L     LP A K    M ++G        + +  +  KAR    Y+  LK
Sbjct: 479 LGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARN---YQNALK 525


>gi|357156708|ref|XP_003577549.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13420,
           mitochondrial-like [Brachypodium distachyon]
          Length = 522

 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 92/389 (23%), Positives = 155/389 (39%), Gaps = 17/389 (4%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVME 162
           A++ VVD LG+   FDA W  +     +   +  TFA +   YV A   + A+  FD ME
Sbjct: 116 AYDAVVDALGRAHQFDAAWRLVVEAAADGAATSRTFAVLARRYVAAGMTRQAVRAFDDME 175

Query: 163 QY-GCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVA 221
            + G + D     +LL  +C+      A +       + +P+   Y IL+ GW K     
Sbjct: 176 AFVGREPDAGEFTTLLDTLCKYKYPKVATEVFNKRKYKYEPNEKMYTILIYGWCKVNRND 235

Query: 222 NAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD---------GIYETVNSLKRMMERG 272
            ++K   +M I+ G +P NV  Y+  L  + +             +    + LK M +RG
Sbjct: 236 MSQKFLKDM-IDHGIEP-NVVTYNILLNGVCRHASLHPDNRFDRTVRAAEDLLKEMRDRG 293

Query: 273 CNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAA 332
             P +T + +                ++ +M  R G  P    Y  +I           A
Sbjct: 294 IEPDVTSYSIVLHVYSRAHKAELCLCMFRSMKDR-GICPTVATYTSVIKCLASCGRLEDA 352

Query: 333 MKLLDEMVYNGAFPDIQTYNILFEFLVKGRK-LWEASGLFNEM--VKNENVLNHENCRAA 389
            +LL EM   G  P   TYN  F+   +GRK +  A  L+ +M    +    +  +    
Sbjct: 353 ERLLHEMASEGVCPSPATYNCFFK-EYRGRKDVIGALELYKKMKAPASPTAPDIHSYHIL 411

Query: 390 VRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
           + +++  +      + W  M E+      ++  LL+ G C+     EA ++   M EKG 
Sbjct: 412 LGMFVKLNQHGTVTELWNDMCESTVGPDLDSYTLLIHGFCENEKWREACQFFMEMIEKGF 471

Query: 450 QVTPFALSKLKQILIKARKEAVYEELLKK 478
                    L + LI+A     +  L K+
Sbjct: 472 LPQKITFEILYRGLIQADMLRTWRRLKKR 500


>gi|238908350|emb|CAZ40335.1| non restoring pentatricopeptide repeat [Raphanus sativus]
          Length = 683

 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 76/326 (23%), Positives = 136/326 (41%), Gaps = 8/326 (2%)

Query: 125 KSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDG 184
           K  +K+    + +F  +   +    ++  A++TF  + + G   DV    +LL  +C D 
Sbjct: 106 KMERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFTTLLHGLCLDH 165

Query: 185 KTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAY 244
           +  +A      +    +PD  T+  L+ G  +E  V  A      MV E G  PD +  Y
Sbjct: 166 RVSEALDLFHQI---CRPDVLTFTTLMNGLCREGRVVEAVALLDRMV-ENGLQPDQI-TY 220

Query: 245 DSYLITLLKGCDGIYETVNSLKRMME-RGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAM 303
            +++  + K  D +   +N L++M E     P +  +    +          +  ++  M
Sbjct: 221 GTFVDGMCKMGDTV-SALNLLRKMEEISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEM 279

Query: 304 VGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRK 363
             + G  P+   YN MI  +C S    AA +LL EM+     P++ TYN L    VK  K
Sbjct: 280 QDK-GIFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGK 338

Query: 364 LWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNL 423
            +EA+ L++EM+    + N     + +  +   D    A   +  M    CS    T   
Sbjct: 339 FFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTT 398

Query: 424 LVAGLCDMHMLPEAVKYAKGMAEKGI 449
           L+ G C    + + ++    M  +G+
Sbjct: 399 LIDGYCGAKRIDDGMELLHEMPRRGL 424



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 84/347 (24%), Positives = 146/347 (42%), Gaps = 45/347 (12%)

Query: 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL- 193
           + TF ++     +  RV +A+  F  +    C+ DV    +L++ +CR+G+ ++A   L 
Sbjct: 151 VVTFTTLLHGLCLDHRVSEALDLFHQI----CRPDVLTFTTLMNGLCREGRVVEAVALLD 206

Query: 194 RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLK 253
           R+V+  ++PD  TY   ++G  K  D  +A     +M  E+     NV  Y + +  L K
Sbjct: 207 RMVENGLQPDQITYGTFVDGMCKMGDTVSALNLLRKME-EISHIKPNVVIYSAIIDGLCK 265

Query: 254 GC--------------DGIYETVNS--------------------LKRMMERGCNPGM-T 278
                            GI+  + +                    L+ M+ER  +P + T
Sbjct: 266 DGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKISPNVVT 325

Query: 279 FFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDE 338
           +  L       G+    AE ++  M+ R G  P+T  YN MI  +C  +   AA  +   
Sbjct: 326 YNALINAFVKEGKFFEAAE-LYDEMLPR-GIIPNTITYNSMIDGFCKQDRLDAAEDMFYL 383

Query: 339 MVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDD 398
           M   G  PD+ T+  L +     +++ +   L +EM +   V N       +  +    D
Sbjct: 384 MATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGD 443

Query: 399 PYVAIKFWKYMIENH-CSDLSETGNLLVAGLCDMHMLPEAVKYAKGM 444
              A+   + MI +  C D+  T N L+ GLCD   L +A++  K M
Sbjct: 444 LNAALDLSQQMISSGVCPDIV-TCNTLLDGLCDNGKLKDALEMFKAM 489



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 77/337 (22%), Positives = 142/337 (42%), Gaps = 31/337 (9%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           ++  ++++        R  D+   F  M+  G   ++   N ++   C  G+   A + L
Sbjct: 252 NVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLL 311

Query: 194 R-VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
           + +++ +I P+  TY  L+  + KE     A + + EM +  G  P+ +  Y+S +    
Sbjct: 312 QEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEM-LPRGIIPNTI-TYNSMIDGFC 369

Query: 253 KGCDGIYETVNSLKRMMERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRP 311
           K  D +    +    M  +GC+P + TF  L    C   +   G E +    + R G   
Sbjct: 370 KQ-DRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHE--MPRRGLVA 426

Query: 312 DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLF 371
           +T  YN +I  +C   +  AA+ L  +M+ +G  PDI T N L + L    KL +A  +F
Sbjct: 427 NTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMF 486

Query: 372 NEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDM 431
             M K+             ++ +D+  P+  ++           D+  T N+L+ GL + 
Sbjct: 487 KAMQKS-------------KMDLDASHPFNGVE----------PDVL-TYNILICGLINE 522

Query: 432 HMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARK 468
               EA +  + M  +GI       S +   L K  +
Sbjct: 523 GKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSR 559



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 75/310 (24%), Positives = 120/310 (38%), Gaps = 31/310 (10%)

Query: 89  RWSAYQ------LNDKHSP--YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFA 139
           RWSA Q      L  K SP    +N +++   K   F    +    M    ++ +  T+ 
Sbjct: 303 RWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYN 362

Query: 140 SVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR 199
           S+   +   DR+  A   F +M   GC  DVF   +L+   C   +  D  + L  +  R
Sbjct: 363 SMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRR 422

Query: 200 -IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG-CDG 257
            +  +  TY  L+ G+    D+ NA     + +I  G  PD V        TLL G CD 
Sbjct: 423 GLVANTVTYNTLIHGFCLVGDL-NAALDLSQQMISSGVCPDIVTCN-----TLLDGLCDN 476

Query: 258 --IYETVNSLKRMME-----------RGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMV 304
             + + +   K M +            G  P +  + +     +       AE ++  M 
Sbjct: 477 GKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMP 536

Query: 305 GRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKL 364
            R G  PDT  Y+ MI   C  +    A ++   M      P++ T+N L     K  ++
Sbjct: 537 HR-GIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRV 595

Query: 365 WEASGLFNEM 374
            +   LF EM
Sbjct: 596 DDGLELFCEM 605



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 58/240 (24%), Positives = 96/240 (40%), Gaps = 19/240 (7%)

Query: 132 VLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ 191
           V +  T+ ++   + +   +  A+     M   G   D+   N+LL  +C +GK  DA +
Sbjct: 425 VANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALE 484

Query: 192 FLRVVD------------GRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPD 239
             + +               ++PD  TY IL+ G   E     A++ + EM    G  PD
Sbjct: 485 MFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMP-HRGIVPD 543

Query: 240 NVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGM-TFFKLAFEECLTGQNLRGAEF 298
            +  Y S +  L K    + E       M  +  +P + TF  L    C  G+   G E 
Sbjct: 544 TI-TYSSMIDGLCKQ-SRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLEL 601

Query: 299 IWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPD-IQTYNILFEF 357
                +GR G   D  +Y  +I  +        A+ +  EM+ +G +PD I   N+L  F
Sbjct: 602 F--CEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGF 659



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 71/314 (22%), Positives = 118/314 (37%), Gaps = 30/314 (9%)

Query: 86  KFFRWSAYQLNDKHSPYA-------WNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLAT 137
           KFF   A +L D+  P         +N ++D   K    DA  D    M  +     + T
Sbjct: 338 KFFE--AAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFT 395

Query: 138 FASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDG---KTIDAWQFLR 194
           F ++   Y  A R+ D +     M + G   +    N+L+   C  G     +D  Q  +
Sbjct: 396 FTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQ--Q 453

Query: 195 VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEV----------GWDPDNVPAY 244
           ++   + PD  T   LL+G      + +A + F  M              G +PD V  Y
Sbjct: 454 MISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPD-VLTY 512

Query: 245 DSYLITLLKGCDGIYETVNSL-KRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAM 303
           +  +  L+   +G +     L + M  RG  P    +    +       L  A  ++ +M
Sbjct: 513 NILICGLIN--EGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSM 570

Query: 304 VGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRK 363
            G   F P+   +N +I+ YC +      ++L  EM   G   D   Y  L     K   
Sbjct: 571 -GSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGN 629

Query: 364 LWEASGLFNEMVKN 377
           +  A  +F EM+ +
Sbjct: 630 INGALDIFQEMISS 643


>gi|115475535|ref|NP_001061364.1| Os08g0248400 [Oryza sativa Japonica Group]
 gi|113623333|dbj|BAF23278.1| Os08g0248400, partial [Oryza sativa Japonica Group]
          Length = 440

 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 81/325 (24%), Positives = 143/325 (44%), Gaps = 16/325 (4%)

Query: 61  TLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSP--YAWNLVVDLLGKNCLFD 118
           ++IR     +  V + S   P  AV  F   A   +   +P  + + +++    +    D
Sbjct: 59  SIIRSLNRALAAVARDS---PAAAVSGFNRMARSSDGAVTPTLHTYGILIGCCCRAGRLD 115

Query: 119 AMWDAIKS-MKKENVLSLATFASVFSSYVVADRVKDAIT-TFDVMEQYGCKHDVFALNSL 176
             +  + + +KK   +    F  +  S     R  +A+      M + GC   VF+ N L
Sbjct: 116 LGFAGLGNVIKKGYRVEPIIFTPLLKSLCAEKRTSNAMNIVLRRMTELGCAPHVFSYNIL 175

Query: 177 LSAICRDGKTIDAWQFLRVV---DGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIE 233
           L  +C + ++ +A + L ++    G   PD  +Y+ +++G  KE D   A  T+ EM +E
Sbjct: 176 LKGLCHESRSQEALELLHMMADDGGDCPPDVVSYSTIIDGLFKEGDSDKAYSTYHEM-LE 234

Query: 234 VGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPG-MTFFKLAFEECLTGQN 292
            G  PD V  Y++ +  L K    + + ++ L RM++ G  P  +T+  +    C +GQ+
Sbjct: 235 RGILPD-VVTYNTIVAALCKA-QAMDKAMDVLNRMVKNGVMPDCITYNSIVHGYCSSGQS 292

Query: 293 LRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYN 352
            + A  I   M    G  PD   Y  ++   C +     A K+LD M+  G  P++ TY+
Sbjct: 293 -KEAIGILEKMCSD-GVEPDAVTYTSLMDYLCKNGRCIEARKILDSMIKRGLKPNVITYS 350

Query: 353 ILFEFLVKGRKLWEASGLFNEMVKN 377
            L         L E   L + MV+N
Sbjct: 351 TLLHGYATKGALVEMRDLLDLMVRN 375



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 94/217 (43%), Gaps = 9/217 (4%)

Query: 154 AITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLE 212
           A +T+  M + G   DV   N++++A+C+      A   L R+V   + PD  TY  ++ 
Sbjct: 225 AYSTYHEMLERGILPDVVTYNTIVAALCKAQAMDKAMDVLNRMVKNGVMPDCITYNSIVH 284

Query: 213 GWEKERDVANAKKTFG--EMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMME 270
           G+        +K+  G  E +   G +PD V  Y S +  L K    I E    L  M++
Sbjct: 285 GYCSS---GQSKEAIGILEKMCSDGVEPDAV-TYTSLMDYLCKNGRCI-EARKILDSMIK 339

Query: 271 RGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETG 330
           RG  P +  +        T   L     +   MV R G +PD H+++++I          
Sbjct: 340 RGLKPNVITYSTLLHGYATKGALVEMRDLLDLMV-RNGIQPDRHVFSILICACTKHQNVD 398

Query: 331 AAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEA 367
            AM +  +M      PD+ TY  L + L K  ++ +A
Sbjct: 399 VAMFVFSKMRQQRLTPDVVTYGTLIDGLCKSGRVDDA 435



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 71/298 (23%), Positives = 115/298 (38%), Gaps = 14/298 (4%)

Query: 170 VFALNSLLSAICRDGKTIDAWQFLRVV---DGRIKPDNDTYAILLEGWEKERDVANAKKT 226
           + +LN  L+A+ RD        F R+    DG + P   TY IL+    +   +      
Sbjct: 61  IRSLNRALAAVARDSPAAAVSGFNRMARSSDGAVTPTLHTYGILIGCCCRAGRLDLGFAG 120

Query: 227 FGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNS----LKRMMERGCNPGMTFFKL 282
            G  VI+ G+  + +         LLK       T N+    L+RM E GC P +  + +
Sbjct: 121 LGN-VIKKGYRVEPI-----IFTPLLKSLCAEKRTSNAMNIVLRRMTELGCAPHVFSYNI 174

Query: 283 AFEE-CLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVY 341
             +  C   ++    E +           PD   Y+ +I       ++  A     EM+ 
Sbjct: 175 LLKGLCHESRSQEALELLHMMADDGGDCPPDVVSYSTIIDGLFKEGDSDKAYSTYHEMLE 234

Query: 342 NGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYV 401
            G  PD+ TYN +   L K + + +A  + N MVKN  + +     + V  Y  S     
Sbjct: 235 RGILPDVVTYNTIVAALCKAQAMDKAMDVLNRMVKNGVMPDCITYNSIVHGYCSSGQSKE 294

Query: 402 AIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKL 459
           AI   + M  +     + T   L+  LC      EA K    M ++G++      S L
Sbjct: 295 AIGILEKMCSDGVEPDAVTYTSLMDYLCKNGRCIEARKILDSMIKRGLKPNVITYSTL 352



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 56/232 (24%), Positives = 88/232 (37%), Gaps = 41/232 (17%)

Query: 104 WNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVME 162
           +N +V  L K    D   D +  M K  V+    T+ S+   Y  + + K+AI   + M 
Sbjct: 244 YNTIVAALCKAQAMDKAMDVLNRMVKNGVMPDCITYNSIVHGYCSSGQSKEAIGILEKMC 303

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVA 221
             G + D     SL+  +C++G+ I+A + L  +  R +KP+  TY+ LL G+       
Sbjct: 304 SDGVEPDAVTYTSLMDYLCKNGRCIEARKILDSMIKRGLKPNVITYSTLLHGYA------ 357

Query: 222 NAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFK 281
               T G +V                            E  + L  M+  G  P    F 
Sbjct: 358 ----TKGALV----------------------------EMRDLLDLMVRNGIQPDRHVFS 385

Query: 282 LAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAM 333
           +    C   QN+  A F++  M  +    PD   Y  +I   C S     AM
Sbjct: 386 ILICACTKHQNVDVAMFVFSKMRQQ-RLTPDVVTYGTLIDGLCKSGRVDDAM 436


>gi|357494039|ref|XP_003617308.1| Auxin response factor [Medicago truncatula]
 gi|355518643|gb|AET00267.1| Auxin response factor [Medicago truncatula]
          Length = 948

 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 84/317 (26%), Positives = 140/317 (44%), Gaps = 10/317 (3%)

Query: 138 FASVFSSYVVADRVKDAI-TTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RV 195
           + ++ + YVV+ R ++A    +  M   G + D F  N ++  +C+ G  + A +FL  +
Sbjct: 339 YNTLINGYVVSGRFEEAKDLLYKNMVIAGFEPDAFTFNIMIDGLCKKGYLVSALEFLDEM 398

Query: 196 VDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
           V    +P+  TY IL++G+ K+     A K    M  + G   + V  Y+  +  L K  
Sbjct: 399 VKKGFEPNVITYTILIDGFCKQGHFEEASKVVNSMSAK-GLSLNTV-GYNCLIGALCK-- 454

Query: 256 DG-IYETVNSLKRMMERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDT 313
           DG I + +     M  +GC P + TF  L +  C     +  A  ++  M+   G   +T
Sbjct: 455 DGKIQDALQMYGEMSSKGCKPDIYTFNSLIYGLC-KNDKMEEALGLYRDMLLE-GVIANT 512

Query: 314 HMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNE 373
             YN +I  +        A KL+ EM + G   D  TYN L + L K     +  GL  +
Sbjct: 513 VTYNTLIHAFLRLELIQQADKLVGEMRFRGCPLDNITYNGLIKALCKTGATEKCLGLIEQ 572

Query: 374 MVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHM 433
           M   E   +  +C   +  +  +     A++F + MI+   +    T N L+ GLC M  
Sbjct: 573 MFGEEIFPSINSCNILINSFCRTGKVNDALQFLRDMIQRGLTPDIVTYNSLINGLCKMGR 632

Query: 434 LPEAVKYAKGMAEKGIQ 450
             EA+    G+  KGI 
Sbjct: 633 FQEALNLFNGLQAKGIH 649



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 73/296 (24%), Positives = 129/296 (43%), Gaps = 43/296 (14%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASVFSSYVVADRVKDAITTFDVM 161
            + +++D   K   F+     + SM  + + L+   +  +  +     +++DA+  +  M
Sbjct: 409 TYTILIDGFCKQGHFEEASKVVNSMSAKGLSLNTVGYNCLIGALCKDGKIQDALQMYGEM 468

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR--VVDGRIKPDNDTYAILLEGWEKERD 219
              GCK D++  NSL+  +C++ K  +A    R  +++G I  +  TY  L+  + +   
Sbjct: 469 SSKGCKPDIYTFNSLIYGLCKNDKMEEALGLYRDMLLEGVI-ANTVTYNTLIHAFLRLEL 527

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG-----CDG---------IYETVNS- 264
           +  A K  GEM    G   DN+  Y+  +  L K      C G         I+ ++NS 
Sbjct: 528 IQQADKLVGEMRFR-GCPLDNI-TYNGLIKALCKTGATEKCLGLIEQMFGEEIFPSINSC 585

Query: 265 -------------------LKRMMERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMV 304
                              L+ M++RG  P + T+  L    C  G+  + A  ++  + 
Sbjct: 586 NILINSFCRTGKVNDALQFLRDMIQRGLTPDIVTYNSLINGLCKMGR-FQEALNLFNGLQ 644

Query: 305 GRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVK 360
            + G  PD   YN +IS YCY      A +LL + V NG  P+  T++IL  + VK
Sbjct: 645 AK-GIHPDAVTYNTLISRYCYEGLFNDACQLLFKGVSNGFIPNEITWSILINYFVK 699



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 69/276 (25%), Positives = 122/276 (44%), Gaps = 8/276 (2%)

Query: 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDV 160
           + +N+++D L K     +  + +  M K+    ++ T+  +   +      ++A    + 
Sbjct: 373 FTFNIMIDGLCKKGYLVSALEFLDEMVKKGFEPNVITYTILIDGFCKQGHFEEASKVVNS 432

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERD 219
           M   G   +    N L+ A+C+DGK  DA Q    +  +  KPD  T+  L+ G  K   
Sbjct: 433 MSAKGLSLNTVGYNCLIGALCKDGKIQDALQMYGEMSSKGCKPDIYTFNSLIYGLCKNDK 492

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCN-PGMT 278
           +  A   + +M++E      N   Y++ +   L+  + I +    +  M  RGC    +T
Sbjct: 493 MEEALGLYRDMLLE--GVIANTVTYNTLIHAFLR-LELIQQADKLVGEMRFRGCPLDNIT 549

Query: 279 FFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDE 338
           +  L    C TG   +    I   M G   F P  +  N++I+ +C + +   A++ L +
Sbjct: 550 YNGLIKALCKTGATEKCLGLIE-QMFGEEIF-PSINSCNILINSFCRTGKVNDALQFLRD 607

Query: 339 MVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
           M+  G  PDI TYN L   L K  +  EA  LFN +
Sbjct: 608 MIQRGLTPDIVTYNSLINGLCKMGRFQEALNLFNGL 643



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 66/302 (21%), Positives = 114/302 (37%), Gaps = 43/302 (14%)

Query: 149 DRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYA 208
           +RV +A+   + M   GC+ DV   N ++  +C+ G+  +A +    +  R+   + T  
Sbjct: 249 NRVNEAMKLLEEMFLMGCEPDVQTFNDVIHGLCKAGRIHEAAK----LHDRMLLRDFTAD 304

Query: 209 ILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRM 268
            L++G+         K                                     V+  + M
Sbjct: 305 ALIQGYLMHGLCRMGK-------------------------------------VDEARAM 327

Query: 269 MERGCNPGMTFFK-LAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSN 327
           + +  NP    +  L     ++G+     + ++  MV   GF PD   +N+MI   C   
Sbjct: 328 LSKIPNPNTVLYNTLINGYVVSGRFEEAKDLLYKNMV-IAGFEPDAFTFNIMIDGLCKKG 386

Query: 328 ETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCR 387
              +A++ LDEMV  G  P++ TY IL +   K     EAS + N M      LN     
Sbjct: 387 YLVSALEFLDEMVKKGFEPNVITYTILIDGFCKQGHFEEASKVVNSMSAKGLSLNTVGYN 446

Query: 388 AAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEK 447
             +           A++ +  M    C     T N L+ GLC    + EA+   + M  +
Sbjct: 447 CLIGALCKDGKIQDALQMYGEMSSKGCKPDIYTFNSLIYGLCKNDKMEEALGLYRDMLLE 506

Query: 448 GI 449
           G+
Sbjct: 507 GV 508



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 58/243 (23%), Positives = 96/243 (39%), Gaps = 35/243 (14%)

Query: 242 PAYDSYLITLLKGCDGIYETV--NSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFI 299
           P + SY + L     G    V  N    M+ RG +P +  F +  +       +  A  +
Sbjct: 163 PTFKSYNVVLEILVAGNCPKVAPNVFYDMLSRGISPTVYTFGVVMKAFCMVNEVDSACSL 222

Query: 300 WGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLV 359
              M  + G  P++ +Y M+I     +N    AMKLL+EM   G  PD+QT+N +   L 
Sbjct: 223 LRDMT-KHGCVPNSIIYQMLIHALSENNRVNEAMKLLEEMFLMGCEPDVQTFNDVIHGLC 281

Query: 360 KGRKLWEASGLFNEMVKN--------ENVLNHENCRAA----------------VRVYMD 395
           K  ++ EA+ L + M+          +  L H  CR                    +Y  
Sbjct: 282 KAGRIHEAAKLHDRMLLRDFTADALIQGYLMHGLCRMGKVDEARAMLSKIPNPNTVLYNT 341

Query: 396 SDDPYVAIK--------FWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEK 447
             + YV            +K M+       + T N+++ GLC    L  A+++   M +K
Sbjct: 342 LINGYVVSGRFEEAKDLLYKNMVIAGFEPDAFTFNIMIDGLCKKGYLVSALEFLDEMVKK 401

Query: 448 GIQ 450
           G +
Sbjct: 402 GFE 404



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 101/450 (22%), Positives = 157/450 (34%), Gaps = 83/450 (18%)

Query: 58  LDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLF 117
           L ++L  ++   + ++L+     P  ++  F  +  Q    HS + + L++D LG    F
Sbjct: 52  LQRSLNPITPSQLCKLLELPLDVP-TSMDLFEKAGLQRGYIHSFHVYYLLIDKLGNVGEF 110

Query: 118 DAMWDAIKSMKKENVL------------------------------SLATFASVFSSYVV 147
             +   +K MK E  +                               +  F   F SY V
Sbjct: 111 KMIDKLLKQMKDEGCVFKESLFILIMRYYGKAGLPGQATRLLLDMWGVYCFEPTFKSYNV 170

Query: 148 ADRV-------KDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGR 199
              +       K A   F  M   G    V+    ++ A C   +   A   LR +    
Sbjct: 171 VLEILVAGNCPKVAPNVFYDMLSRGISPTVYTFGVVMKAFCMVNEVDSACSLLRDMTKHG 230

Query: 200 IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIY 259
             P++  Y +L+    +   V  A K   EM + +G +PD V  ++  +  L K    I+
Sbjct: 231 CVPNSIIYQMLIHALSENNRVNEAMKLLEEMFL-MGCEPD-VQTFNDVIHGLCKA-GRIH 287

Query: 260 ETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMM 319
           E      RM+ R      T   L     + G    G      AM+ +I   P+T +YN +
Sbjct: 288 EAAKLHDRMLLRD----FTADALIQGYLMHGLCRMGKVDEARAMLSKIP-NPNTVLYNTL 342

Query: 320 ISLYCYSNETGAAMKLL-DEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNE 378
           I+ Y  S     A  LL   MV  G  PD  T+NI+ + L K   L  A    +EMVK  
Sbjct: 343 INGYVVSGRFEEAKDLLYKNMVIAGFEPDAFTFNIMIDGLCKKGYLVSALEFLDEMVKK- 401

Query: 379 NVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAV 438
                              +P V                  T  +L+ G C      EA 
Sbjct: 402 -----------------GFEPNVI-----------------TYTILIDGFCKQGHFEEAS 427

Query: 439 KYAKGMAEKGIQVTPFALSKLKQILIKARK 468
           K    M+ KG+ +     + L   L K  K
Sbjct: 428 KVVNSMSAKGLSLNTVGYNCLIGALCKDGK 457


>gi|356502394|ref|XP_003520004.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 525

 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 89/377 (23%), Positives = 169/377 (44%), Gaps = 12/377 (3%)

Query: 80  HPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLG--KNCLFDAMWDAIKSMKKENVL-SLA 136
           H   A+   + + Y L  K   +   +V++ L   K+ +F   +  + +M K  V  ++ 
Sbjct: 22  HYATAISLIKHT-YSLGVKPDVHTLTIVINCLCHLKHTVFG--FSVLGAMFKIGVEPTVV 78

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           TFA++ +       V  A    D +E  G + + +   ++++ +C+ G T  A  +L  +
Sbjct: 79  TFATLINGLCAEGNVGAAARFADSLEDMGYESNSYTHGTIINGLCKVGDTAGAISYLEKI 138

Query: 197 DGRIKPDN--DTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG 254
           +GR +  +    Y+ +++   K+  +  A   F  M  + G  PD V AY+S LI  L  
Sbjct: 139 EGRNRGFDLLIAYSTIMDSLCKDGMLCLALNFFSGMTCK-GIQPDLV-AYNS-LIHGLCS 195

Query: 255 CDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTH 314
                E    L  MM +G  P +  F +  +       +  A+ I   MV  +G  PD  
Sbjct: 196 FGRWNEATTLLGNMMRKGIMPNVQTFNVLVDNFCKEGKISRAKTIMCFMV-HVGVEPDVV 254

Query: 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
            YN +IS +C  ++   A+K+ + M++ G  P++ TY+ L     K R + +A  + +EM
Sbjct: 255 TYNSVISGHCLLSQMNDAVKVFELMIHKGLLPNVVTYSSLIHGWCKTRNINKAIFVLDEM 314

Query: 375 VKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHML 434
           V N   L+       +  +  +  P  AI+ +  M E+H     +T  +++ GL      
Sbjct: 315 VNNGLNLDVVTWSTLIGGFCKAGRPEAAIELFCTMHEHHQLPNLQTCAIILDGLFKCQFH 374

Query: 435 PEAVKYAKGMAEKGIQV 451
            EA+   + M +  +++
Sbjct: 375 SEAISLFRKMEKMNLEL 391



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 89/381 (23%), Positives = 156/381 (40%), Gaps = 42/381 (11%)

Query: 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL- 193
           L  ++++  S      +  A+  F  M   G + D+ A NSL+  +C  G+  +A   L 
Sbjct: 148 LIAYSTIMDSLCKDGMLCLALNFFSGMTCKGIQPDLVAYNSLIHGLCSFGRWNEATTLLG 207

Query: 194 RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLK 253
            ++   I P+  T+ +L++ + KE  ++ AK     MV  VG +PD V  Y+S +I+   
Sbjct: 208 NMMRKGIMPNVQTFNVLVDNFCKEGKISRAKTIMCFMV-HVGVEPD-VVTYNS-VISGHC 264

Query: 254 GCDGIYETVNSLKRMMERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD 312
               + + V   + M+ +G  P + T+  L    C T +N+  A F+   MV   G   D
Sbjct: 265 LLSQMNDAVKVFELMIHKGLLPNVVTYSSLIHGWCKT-RNINKAIFVLDEMVNN-GLNLD 322

Query: 313 THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFN 372
              ++ +I  +C +    AA++L   M  +   P++QT  I+ + L K +   EA  LF 
Sbjct: 323 VVTWSTLIGGFCKAGRPEAAIELFCTMHEHHQLPNLQTCAIILDGLFKCQFHSEAISLFR 382

Query: 373 EMVKNE---NVLNHE-------------------NCRAAVRVYMDSDDPYVAIK------ 404
           +M K     N++ +                    +C  +  + +D       IK      
Sbjct: 383 KMEKMNLELNIVTYNIVLDGMCSFGKFNDARELFSCLPSKGIQIDVVAYTTMIKGLCKEG 442

Query: 405 -------FWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALS 457
                      M EN C     T N+LV GL   + +  + KY   M  KG+        
Sbjct: 443 LLDDAEDLLMKMEENGCPPNEFTYNVLVRGLLQRYDISRSTKYLMLMKGKGLSADATTTE 502

Query: 458 KLKQILIKARKEAVYEELLKK 478
            L       ++ +  +  L+K
Sbjct: 503 LLISYFSANKENSALQVFLQK 523



 Score = 41.2 bits (95), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 26/103 (25%), Positives = 50/103 (48%), Gaps = 2/103 (1%)

Query: 125 KSMKKENV-LSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRD 183
           + M+K N+ L++ T+  V        +  DA   F  +   G + DV A  +++  +C++
Sbjct: 382 RKMEKMNLELNIVTYNIVLDGMCSFGKFNDARELFSCLPSKGIQIDVVAYTTMIKGLCKE 441

Query: 184 GKTIDAWQFLRVVDGRIKPDND-TYAILLEGWEKERDVANAKK 225
           G   DA   L  ++    P N+ TY +L+ G  +  D++ + K
Sbjct: 442 GLLDDAEDLLMKMEENGCPPNEFTYNVLVRGLLQRYDISRSTK 484


>gi|297797449|ref|XP_002866609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312444|gb|EFH42868.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 724

 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 80/314 (25%), Positives = 140/314 (44%), Gaps = 6/314 (1%)

Query: 138 FASVFSSYVVADRVKDAITTF-DVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           F ++   +V   R+ DA     D++  YG   DV   NSL+    + G    A + LR +
Sbjct: 350 FNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKKGLVGLALEVLRDM 409

Query: 197 DGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
             +  KP+  +Y IL++G+ K   +  A     EM  + G  P+ V    + LI+     
Sbjct: 410 RNKGCKPNVYSYTILVDGFCKLGKIDEAYNLLNEMSAD-GLKPNTVGF--NCLISAFCKE 466

Query: 256 DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHM 315
             I E V   + M  +GC P +  F            ++ A ++   M+   G   +T  
Sbjct: 467 HRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISE-GVVANTVT 525

Query: 316 YNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
           YN +I+ +    E   A KL++EMV+ G+  D  TYN L + L +  ++ +A  LF +M+
Sbjct: 526 YNTLINAFLRRGEIKEARKLVNEMVFQGSLLDEITYNSLIKGLCRAGEVDKARSLFEKML 585

Query: 376 KNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLP 435
           ++  V +  +C   +     S     A++F K M+    +    T N L+ GLC    + 
Sbjct: 586 RDGLVPSSISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIE 645

Query: 436 EAVKYAKGMAEKGI 449
           + +   + +  +GI
Sbjct: 646 DGLTMFRKLQAEGI 659



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 82/350 (23%), Positives = 150/350 (42%), Gaps = 11/350 (3%)

Query: 103 AWNLVVDLL-GKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVM 161
           ++N+V+++L   NC   A       + ++   +L TF  V  +    + V  A++    M
Sbjct: 178 SYNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKALCAVNEVDSALSVLRDM 237

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR--VVDGRIKPDNDTYAILLEGWEKERD 219
            ++GC  +     +L+ ++ +  +  +A Q L    + G + PD +T+  ++ G  K   
Sbjct: 238 TKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCV-PDAETFNDVILGLCKFDR 296

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTF 279
           +  A K    M+I  G+ PD++  Y   +  L K        V++ K +  R   P    
Sbjct: 297 INEAAKMVNRMLIR-GFTPDDI-TYGYLMNGLCK-----IGRVDAAKDLFYRIPKPTSVI 349

Query: 280 FKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEM 339
           F       +T   L  A+ +   MV   G  PD   YN +I  Y      G A+++L +M
Sbjct: 350 FNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKKGLVGLALEVLRDM 409

Query: 340 VYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDP 399
              G  P++ +Y IL +   K  K+ EA  L NEM  +    N       +  +      
Sbjct: 410 RNKGCKPNVYSYTILVDGFCKLGKIDEAYNLLNEMSADGLKPNTVGFNCLISAFCKEHRI 469

Query: 400 YVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
             A++ ++ M    C     T N L++GLC++  +  A+   + M  +G+
Sbjct: 470 PEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGV 519



 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 73/289 (25%), Positives = 132/289 (45%), Gaps = 10/289 (3%)

Query: 98  KHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAIT 156
           K + Y++ ++VD   K    D  ++ +  M  + +  +   F  + S++    R+ +A+ 
Sbjct: 415 KPNVYSYTILVDGFCKLGKIDEAYNLLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVE 474

Query: 157 TFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYAILLEGWE 215
            F  M + GCK DV+  NSL+S +C   +   A   LR ++   +  +  TY  L+  + 
Sbjct: 475 IFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFL 534

Query: 216 KERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSL-KRMMERGCN 274
           +  ++  A+K   EMV + G   D +  Y+S +  L +   G  +   SL ++M+  G  
Sbjct: 535 RRGEIKEARKLVNEMVFQ-GSLLDEI-TYNSLIKGLCRA--GEVDKARSLFEKMLRDGLV 590

Query: 275 PGMTFFKLAFEE-CLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAM 333
           P      +     C +G      EF    MV R G  PD   +N +I+  C +      +
Sbjct: 591 PSSISCNILINGLCRSGMVEEAVEF-QKEMVLR-GSTPDIVTFNSLINGLCRAGRIEDGL 648

Query: 334 KLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLN 382
            +  ++   G  PD  TYN L  +L KG  +++A  L +E +++  V N
Sbjct: 649 TMFRKLQAEGIPPDTVTYNTLMSWLCKGGFVYDACLLLDEGIEDGFVPN 697


>gi|32527604|gb|AAP86199.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
          Length = 686

 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 76/326 (23%), Positives = 136/326 (41%), Gaps = 8/326 (2%)

Query: 125 KSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDG 184
           K  +K+    + +F  +   +    ++  A++TF  + + G   DV    +LL  +C D 
Sbjct: 106 KMERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFTTLLHGLCLDH 165

Query: 185 KTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAY 244
           +  +A      +    +PD  T+  L+ G  +E  V  A      MV E G  PD +  Y
Sbjct: 166 RVSEALDLFHQI---CRPDVLTFTTLMNGLCREGRVVEAVALLDRMV-ENGLQPDQI-TY 220

Query: 245 DSYLITLLKGCDGIYETVNSLKRMME-RGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAM 303
            +++  + K  D +   +N L++M E     P +  +    +          +  ++  M
Sbjct: 221 GTFVDGMCKMGDTV-SALNLLRKMEEISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEM 279

Query: 304 VGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRK 363
             + G  P+   YN MI  +C S    AA +LL EM+     P++ TYN L    VK  K
Sbjct: 280 QDK-GIFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGK 338

Query: 364 LWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNL 423
            +EA+ L++EM+    + N     + +  +   D    A   +  M    CS    T   
Sbjct: 339 FFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTT 398

Query: 424 LVAGLCDMHMLPEAVKYAKGMAEKGI 449
           L+ G C    + + ++    M  +G+
Sbjct: 399 LIDGYCGAKRIDDGMELLHEMPRRGL 424



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 84/347 (24%), Positives = 146/347 (42%), Gaps = 45/347 (12%)

Query: 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL- 193
           + TF ++     +  RV +A+  F  +    C+ DV    +L++ +CR+G+ ++A   L 
Sbjct: 151 VVTFTTLLHGLCLDHRVSEALDLFHQI----CRPDVLTFTTLMNGLCREGRVVEAVALLD 206

Query: 194 RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLK 253
           R+V+  ++PD  TY   ++G  K  D  +A     +M  E+     NV  Y + +  L K
Sbjct: 207 RMVENGLQPDQITYGTFVDGMCKMGDTVSALNLLRKME-EISHIKPNVVIYSAIIDGLCK 265

Query: 254 GC--------------DGIYETVNS--------------------LKRMMERGCNPGM-T 278
                            GI+  + +                    L+ M+ER  +P + T
Sbjct: 266 DGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKISPNVVT 325

Query: 279 FFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDE 338
           +  L       G+    AE ++  M+ R G  P+T  YN MI  +C  +   AA  +   
Sbjct: 326 YNALINAFVKEGKFFEAAE-LYDEMLPR-GIIPNTITYNSMIDGFCKQDRLDAAEDMFYL 383

Query: 339 MVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDD 398
           M   G  PD+ T+  L +     +++ +   L +EM +   V N       +  +    D
Sbjct: 384 MATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGD 443

Query: 399 PYVAIKFWKYMIENH-CSDLSETGNLLVAGLCDMHMLPEAVKYAKGM 444
              A+   + MI +  C D+  T N L+ GLCD   L +A++  K M
Sbjct: 444 LNAALDLSQQMISSGVCPDIV-TCNTLLDGLCDNGKLKDALEMFKAM 489



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 77/337 (22%), Positives = 142/337 (42%), Gaps = 31/337 (9%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           ++  ++++        R  D+   F  M+  G   ++   N ++   C  G+   A + L
Sbjct: 252 NVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLL 311

Query: 194 R-VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
           + +++ +I P+  TY  L+  + KE     A + + EM+   G  P+ +  Y+S +    
Sbjct: 312 QEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPR-GIIPNTI-TYNSMIDGFC 369

Query: 253 KGCDGIYETVNSLKRMMERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRP 311
           K  D +    +    M  +GC+P + TF  L    C   +   G E +    + R G   
Sbjct: 370 KQ-DRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHE--MPRRGLVA 426

Query: 312 DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLF 371
           +T  YN +I  +C   +  AA+ L  +M+ +G  PDI T N L + L    KL +A  +F
Sbjct: 427 NTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMF 486

Query: 372 NEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDM 431
             M K+             ++ +D+  P+  ++           D+  T N+L+ GL + 
Sbjct: 487 KAMQKS-------------KMDLDASHPFNGVE----------PDVL-TYNILICGLINE 522

Query: 432 HMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARK 468
               EA +  + M  +GI       S +   L K  +
Sbjct: 523 GKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSR 559



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 75/310 (24%), Positives = 120/310 (38%), Gaps = 31/310 (10%)

Query: 89  RWSAYQ------LNDKHSP--YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFA 139
           RWSA Q      L  K SP    +N +++   K   F    +    M    ++ +  T+ 
Sbjct: 303 RWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYN 362

Query: 140 SVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR 199
           S+   +   DR+  A   F +M   GC  DVF   +L+   C   +  D  + L  +  R
Sbjct: 363 SMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRR 422

Query: 200 -IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG-CDG 257
            +  +  TY  L+ G+    D+ NA     + +I  G  PD V        TLL G CD 
Sbjct: 423 GLVANTVTYNTLIHGFCLVGDL-NAALDLSQQMISSGVCPDIVTCN-----TLLDGLCDN 476

Query: 258 --IYETVNSLKRMME-----------RGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMV 304
             + + +   K M +            G  P +  + +     +       AE ++  M 
Sbjct: 477 GKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMP 536

Query: 305 GRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKL 364
            R G  PDT  Y+ MI   C  +    A ++   M      P++ T+N L     K  ++
Sbjct: 537 HR-GIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRV 595

Query: 365 WEASGLFNEM 374
            +   LF EM
Sbjct: 596 DDGLELFCEM 605



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 58/240 (24%), Positives = 96/240 (40%), Gaps = 19/240 (7%)

Query: 132 VLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ 191
           V +  T+ ++   + +   +  A+     M   G   D+   N+LL  +C +GK  DA +
Sbjct: 425 VANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALE 484

Query: 192 FLRVVD------------GRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPD 239
             + +               ++PD  TY IL+ G   E     A++ + EM    G  PD
Sbjct: 485 MFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMP-HRGIVPD 543

Query: 240 NVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGM-TFFKLAFEECLTGQNLRGAEF 298
            +  Y S +  L K    + E       M  +  +P + TF  L    C  G+   G E 
Sbjct: 544 TI-TYSSMIDGLCKQ-SRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLEL 601

Query: 299 IWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPD-IQTYNILFEF 357
                +GR G   D  +Y  +I  +        A+ +  EM+ +G +PD I   N+L  F
Sbjct: 602 F--CEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGF 659



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 71/314 (22%), Positives = 118/314 (37%), Gaps = 30/314 (9%)

Query: 86  KFFRWSAYQLNDKHSP-------YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLAT 137
           KFF   A +L D+  P         +N ++D   K    DA  D    M  +     + T
Sbjct: 338 KFFE--AAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFT 395

Query: 138 FASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDG---KTIDAWQFLR 194
           F ++   Y  A R+ D +     M + G   +    N+L+   C  G     +D  Q  +
Sbjct: 396 FTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQ--Q 453

Query: 195 VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEV----------GWDPDNVPAY 244
           ++   + PD  T   LL+G      + +A + F  M              G +PD V  Y
Sbjct: 454 MISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPD-VLTY 512

Query: 245 DSYLITLLKGCDGIYETVNSL-KRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAM 303
           +  +  L+   +G +     L + M  RG  P    +    +       L  A  ++ +M
Sbjct: 513 NILICGLIN--EGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSM 570

Query: 304 VGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRK 363
            G   F P+   +N +I+ YC +      ++L  EM   G   D   Y  L     K   
Sbjct: 571 -GSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGN 629

Query: 364 LWEASGLFNEMVKN 377
           +  A  +F EM+ +
Sbjct: 630 INGALDIFQEMISS 643


>gi|224092336|ref|XP_002309564.1| predicted protein [Populus trichocarpa]
 gi|222855540|gb|EEE93087.1| predicted protein [Populus trichocarpa]
          Length = 593

 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 113/243 (46%), Gaps = 5/243 (2%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           ++ TF ++ +      +   A+  FD M   GC+ DV+   ++++ +C+ G+T  A   L
Sbjct: 167 TIVTFTTLINWLCKVGKFAQAMELFDDMVARGCRPDVYTYTTIINGLCKIGETAAAAGLL 226

Query: 194 RVVD-GRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
           + ++    +P+  TY+ +++   K+R V  A   F  M ++ G  PD +  Y+S LI  L
Sbjct: 227 KKMEEAGCQPNVVTYSTIIDSHRKDRRVNEALDIFSYMKVK-GISPD-IFTYNS-LIQGL 283

Query: 253 KGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD 312
                  E    L  M      P +  F +  +       +  A+ +   M   +G  PD
Sbjct: 284 CNFSQWKEASALLNEMRSLNIMPDIVTFNVLVDTICKEGKVSEAQGVLKTMT-EMGVEPD 342

Query: 313 THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFN 372
              Y+ ++  Y   +E   A KL D M+  G  PD+ +YNIL     K +++ EA  LFN
Sbjct: 343 VVTYSSLMYGYSLRSEVVEARKLFDAMITKGCKPDVFSYNILINGYCKVKRIDEAKQLFN 402

Query: 373 EMV 375
           EM+
Sbjct: 403 EMI 405



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 85/347 (24%), Positives = 149/347 (42%), Gaps = 22/347 (6%)

Query: 115 CLFDAMWDAIKS----MKKENVLSLATFASVFSSYVVADRVKDAITTF-DVMEQYGCKHD 169
           C F  + DA+ S    + ++ +  +  F  + S+ V   +  D + +    ME  G   +
Sbjct: 73  CSFRNIDDALASFNHMLHRKPLPCIIQFTKLLSAIVKMGQYYDTVISLTKQMELAGLSPN 132

Query: 170 VFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFG 228
           ++ L+ L++      +   A+  L +++   ++P   T+  L+    K    A A + F 
Sbjct: 133 IYTLSILINCFSHLQRVDLAFSVLAKIIKLGLQPTIVTFTTLINWLCKVGKFAQAMELFD 192

Query: 229 EMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNS---LKRMMERGCNPGMTFFKLAFE 285
           +MV   G  PD V  Y     T++ G   I ET  +   LK+M E GC P +  +    +
Sbjct: 193 DMVAR-GCRPD-VYTYT----TIINGLCKIGETAAAAGLLKKMEEAGCQPNVVTYSTIID 246

Query: 286 ECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAF 345
                + +  A  I+  M  + G  PD   YN +I   C  ++   A  LL+EM      
Sbjct: 247 SHRKDRRVNEALDIFSYMKVK-GISPDIFTYNSLIQGLCNFSQWKEASALLNEMRSLNIM 305

Query: 346 PDIQTYNILFEFLVKGRKLWEASGLF---NEMVKNENVLNHENCRAAVRVYMDSDDPYVA 402
           PDI T+N+L + + K  K+ EA G+     EM    +V+ + +       Y    +   A
Sbjct: 306 PDIVTFNVLVDTICKEGKVSEAQGVLKTMTEMGVEPDVVTYSSLMYG---YSLRSEVVEA 362

Query: 403 IKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
            K +  MI   C     + N+L+ G C +  + EA +    M  +G+
Sbjct: 363 RKLFDAMITKGCKPDVFSYNILINGYCKVKRIDEAKQLFNEMIHQGL 409



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 71/288 (24%), Positives = 122/288 (42%), Gaps = 6/288 (2%)

Query: 124 IKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICR 182
           +  M+  N++  + TF  +  +     +V +A      M + G + DV   +SL+     
Sbjct: 296 LNEMRSLNIMPDIVTFNVLVDTICKEGKVSEAQGVLKTMTEMGVEPDVVTYSSLMYGYSL 355

Query: 183 DGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNV 241
             + ++A + F  ++    KPD  +Y IL+ G+ K + +  AK+ F EM I  G  P+NV
Sbjct: 356 RSEVVEARKLFDAMITKGCKPDVFSYNILINGYCKVKRIDEAKQLFNEM-IHQGLTPNNV 414

Query: 242 PAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWG 301
            +Y++ LI  L     + E  N  K M   G  P +  + +  +     Q   G  F   
Sbjct: 415 -SYNT-LIHGLCQLGSLREARNLFKNMHTNGNLPNLFTYSILLDG-FCKQGYFGKAFRLF 471

Query: 302 AMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKG 361
             +     +P+  MYN++I   C S     A KL  E+   G  P+ Q Y  +   L K 
Sbjct: 472 RAMQSTYSKPNLVMYNILIDAMCKSGNLRDARKLFSELFVKGLQPNAQIYTTIINGLCKE 531

Query: 362 RKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYM 409
             L EA   F  M ++    +  +    +R ++   D   A++    M
Sbjct: 532 GLLDEALEAFRNMEEDGCPPDEISYNVIIRGFLHHKDESRAVQLIGEM 579



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 62/287 (21%), Positives = 114/287 (39%), Gaps = 45/287 (15%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVM 161
            +N++VD + K          +K+M +  V   + T++S+   Y +   V +A   FD M
Sbjct: 310 TFNVLVDTICKEGKVSEAQGVLKTMTEMGVEPDVVTYSSLMYGYSLRSEVVEARKLFDAM 369

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDV 220
              GCK DVF+ N L++  C+  +  +A Q F  ++   + P+N +Y  L+ G  +   +
Sbjct: 370 ITKGCKPDVFSYNILINGYCKVKRIDEAKQLFNEMIHQGLTPNNVSYNTLIHGLCQLGSL 429

Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC-DGIYETVNSLKRMMERG-CNPGMT 278
             A+  F  M         N+P   +Y I L   C  G +     L R M+     P + 
Sbjct: 430 REARNLFKNM-----HTNGNLPNLFTYSILLDGFCKQGYFGKAFRLFRAMQSTYSKPNLV 484

Query: 279 FFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMY---------------------- 316
            + +  +      NLR A  ++  +  + G +P+  +Y                      
Sbjct: 485 MYNILIDAMCKSGNLRDARKLFSELFVK-GLQPNAQIYTTIINGLCKEGLLDEALEAFRN 543

Query: 317 -------------NMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQT 350
                        N++I  + +  +   A++L+ EM   G   D+ T
Sbjct: 544 MEEDGCPPDEISYNVIIRGFLHHKDESRAVQLIGEMRDKGFIADVGT 590



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 65/249 (26%), Positives = 119/249 (47%), Gaps = 22/249 (8%)

Query: 247 YLITLLKGCDGIYETVN----SLKRMMERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWG 301
           Y +++L  C    + V+     L ++++ G  P + TF  L    C  G+  +  E ++ 
Sbjct: 134 YTLSILINCFSHLQRVDLAFSVLAKIIKLGLQPTIVTFTTLINWLCKVGKFAQAME-LFD 192

Query: 302 AMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKG 361
            MV R G RPD + Y  +I+  C   ET AA  LL +M   G  P++ TY+ + +   K 
Sbjct: 193 DMVAR-GCRPDVYTYTTIINGLCKIGETAAAAGLLKKMEEAGCQPNVVTYSTIIDSHRKD 251

Query: 362 RKLWEASGLFNEM-VK--NENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLS 418
           R++ EA  +F+ M VK  + ++  + +    +  +    +    +   + +  N   D+ 
Sbjct: 252 RRVNEALDIFSYMKVKGISPDIFTYNSLIQGLCNFSQWKEASALLNEMRSL--NIMPDIV 309

Query: 419 ETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQ---VTPFALS---KLKQILIKARKEAVY 472
            T N+LV  +C    + EA    K M E G++   VT  +L     L+  +++ARK  ++
Sbjct: 310 -TFNVLVDTICKEGKVSEAQGVLKTMTEMGVEPDVVTYSSLMYGYSLRSEVVEARK--LF 366

Query: 473 EELLKK-CK 480
           + ++ K CK
Sbjct: 367 DAMITKGCK 375


>gi|242092708|ref|XP_002436844.1| hypothetical protein SORBIDRAFT_10g009870 [Sorghum bicolor]
 gi|241915067|gb|EER88211.1| hypothetical protein SORBIDRAFT_10g009870 [Sorghum bicolor]
          Length = 755

 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 82/300 (27%), Positives = 133/300 (44%), Gaps = 19/300 (6%)

Query: 85  VKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCL-------FDAMWDAIKSMKKENVLSLAT 137
           V  F   A + + K +P A    + L+G  C        F A    +K+  + NV+    
Sbjct: 72  VSLFTRMARECSSKVAPNACTYSI-LIGCFCRMGRLEHGFAAFGLILKTGWRVNVI---V 127

Query: 138 FASVFSSYVVADRVKDAITTFDV-MEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRV 195
            + +      A RV +A     + M ++GC  DV A N++++   R+G+   A+  FL +
Sbjct: 128 ISQLLKGLCDAKRVDEATDILLLRMSEFGCPPDVVAYNTVINGFFREGQVEKAYNLFLEM 187

Query: 196 VDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
           +D  I P+  TY  +++G  K + V  AK  F +M I+ G  PDN   Y+  +   L   
Sbjct: 188 MDQGIPPNVVTYTTVIDGLCKAQVVDRAKGVFQQM-IDRGVKPDN-GTYNCLIHGYLS-- 243

Query: 256 DGIY-ETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTH 314
            G + E V  L+ M   G  P    + L  +        R A   + +M  R G +PD  
Sbjct: 244 TGKWKEVVQMLEEMSTHGLEPDCITYALLLDYLCKNGRCREARLFFDSMF-RKGIKPDVA 302

Query: 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
           +Y +++  Y            LD MV NG  P+ + +NI+F    K   + EA  +FN+M
Sbjct: 303 IYAILLHGYATKGALSEMHSFLDLMVGNGVSPNRRIFNIMFCAYAKKAMIEEAMHIFNKM 362



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 84/340 (24%), Positives = 144/340 (42%), Gaps = 53/340 (15%)

Query: 138 FASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDA-WQFLRVV 196
           F  +F +Y     +++A+  F+ M Q G   DV +  +L+ A+C+ G+  DA  QF +++
Sbjct: 339 FNIMFCAYAKKAMIEEAMHIFNKMRQQGLSPDVVSFGALIDALCKLGRVDDAVLQFNQMI 398

Query: 197 DGRIKPDNDTYAILLEG------WEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLIT 250
           +  + P+   ++ L+ G      WEK      A++ F E V++ G   D V     +  T
Sbjct: 399 NEGVTPNIFVFSSLVYGLCTVGKWEK------AEELFFE-VLDQGICVDAV-----FFNT 446

Query: 251 LLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFR 310
           L+                    CN            C  G+ +     I   ++ R+G R
Sbjct: 447 LM--------------------CNL-----------CNEGRVMEAQRLI--DLMIRVGVR 473

Query: 311 PDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGL 370
           P+   YN +++ +C +     A KLLD MV NG  P+  TY IL     K R++ +A  L
Sbjct: 474 PNVISYNTLVAGHCLTGRIDEAAKLLDVMVSNGLKPNEFTYTILLRGYCKARRVDDAYSL 533

Query: 371 FNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCD 430
           F EM+              +     +     A + +  MI +       T N+++ GLC 
Sbjct: 534 FREMLMKGVTPVVATYNTILHGLFQTGRFSEANELYLNMINSRTKCDIYTYNIILNGLCK 593

Query: 431 MHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIK-ARKE 469
            + + EA K  + +  K  Q+     + +   L+K  RKE
Sbjct: 594 NNFVDEAFKMFRRLCSKDPQLDSVTFNIMIGALLKGGRKE 633



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 79/299 (26%), Positives = 129/299 (43%), Gaps = 9/299 (3%)

Query: 150 RVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRV-VDGRIKPDNDTYA 208
           RV +A    D+M + G + +V + N+L++  C  G+  +A + L V V   +KP+  TY 
Sbjct: 456 RVMEAQRLIDLMIRVGVRPNVISYNTLVAGHCLTGRIDEAAKLLDVMVSNGLKPNEFTYT 515

Query: 209 ILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRM 268
           ILL G+ K R V +A   F EM+++ G  P  V  Y++ L  L +   G +   N L   
Sbjct: 516 ILLRGYCKARRVDDAYSLFREMLMK-GVTP-VVATYNTILHGLFQ--TGRFSEANELYLN 571

Query: 269 MERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNE 328
           M         +        L   N     F     +     + D+  +N+MI        
Sbjct: 572 MINSRTKCDIYTYNIILNGLCKNNFVDEAFKMFRRLCSKDPQLDSVTFNIMIGALLKGGR 631

Query: 329 TGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRA 388
              AM L   +   G  PD+ TY ++ E L++   L E  GLF+ M K+    N     A
Sbjct: 632 KEDAMDLFATISAYGLVPDVVTYRLIAENLIEEGSLGEFDGLFSAMEKSGTAPNSHMLNA 691

Query: 389 AVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEK 447
            VR  +   D   A  +   + E + S  + T ++L++    ++   E   +AK + EK
Sbjct: 692 LVRRLLHRGDISRAGVYLYKLDEKNFSLEASTTSMLIS----LYSRGEYQPHAKSLPEK 746



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 69/340 (20%), Positives = 125/340 (36%), Gaps = 59/340 (17%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ---FL 193
           T++ +   +    R++     F ++ + G + +V  ++ LL  +C D K +D       L
Sbjct: 92  TYSILIGCFCRMGRLEHGFAAFGLILKTGWRVNVIVISQLLKGLC-DAKRVDEATDILLL 150

Query: 194 RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLK 253
           R+ +    PD   Y  ++ G+ +E  V  A   F EM                       
Sbjct: 151 RMSEFGCPPDVVAYNTVINGFFREGQVEKAYNLFLEM----------------------- 187

Query: 254 GCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDT 313
                          M++G  P +  +    +     Q +  A+ ++  M+ R G +PD 
Sbjct: 188 ---------------MDQGIPPNVVTYTTVIDGLCKAQVVDRAKGVFQQMIDR-GVKPDN 231

Query: 314 HMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNE 373
             YN +I  Y  + +    +++L+EM  +G  PD  TY +L ++L K  +  EA   F+ 
Sbjct: 232 GTYNCLIHGYLSTGKWKEVVQMLEEMSTHGLEPDCITYALLLDYLCKNGRCREARLFFDS 291

Query: 374 MVKNE--------NVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLV 425
           M +           +L H          M S        F   M+ N  S      N++ 
Sbjct: 292 MFRKGIKPDVAIYAILLHGYATKGALSEMHS--------FLDLMVGNGVSPNRRIFNIMF 343

Query: 426 AGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIK 465
                  M+ EA+     M ++G+     +   L   L K
Sbjct: 344 CAYAKKAMIEEAMHIFNKMRQQGLSPDVVSFGALIDALCK 383


>gi|449520325|ref|XP_004167184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 100/397 (25%), Positives = 175/397 (44%), Gaps = 27/397 (6%)

Query: 91  SAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVAD 149
           S Y++N K +   +N++VD L K    D      + MK + ++ S+ ++ S+   +  A 
Sbjct: 205 SRYEINCKPNVITYNIIVDGLCKVGREDEAKQLFEEMKTQGMIPSIISYNSLIHGFCCAG 264

Query: 150 RVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRV-VDGRIKPDNDTYA 208
           + +++    D M   G + D+   N L+  +C++GK I+A + L V ++  I PD  TY 
Sbjct: 265 KWEESKRLLDEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYN 324

Query: 209 ILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRM 268
            L+EG+    D+ +A++ F  M  + G +PD V +Y+  LI        + E +     M
Sbjct: 325 SLIEGFCMVGDLNSARELFVSMPSK-GCEPD-VISYN-VLINGYSKTLKVEEAMKLYNEM 381

Query: 269 MERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNE 328
           +  G  P +  +    +       +  A+ ++  M    G   +++ Y + +   C ++ 
Sbjct: 382 LLVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMKAH-GIAENSYTYGIFLDGLCKNDC 440

Query: 329 TGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNE---------N 379
              AMKL  E+  +    +I+  N L + L K  KL  A  LF E + NE          
Sbjct: 441 LFEAMKLFTELKSSNFKLEIENLNCLIDGLCKAGKLETAWELF-EKLSNEGHEPNVVTYT 499

Query: 380 VLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVK 439
           ++ H  CR         D   V I+    M  N C+    T N L+ G  + + L E V+
Sbjct: 500 IMIHGFCREG-----QVDKANVLIQ---KMEANGCTPDIITYNTLMRGFYESNKLEEVVQ 551

Query: 440 YAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELL 476
               MA+K +       S +  +L K  K   Y+E L
Sbjct: 552 LLHRMAQKDVSPDAITCSIVVDMLSKDEK---YQECL 585



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 87/368 (23%), Positives = 152/368 (41%), Gaps = 21/368 (5%)

Query: 127 MKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKT 186
           M+     SL++F  + S            + ++ M   G   D   LN LL+ +C   + 
Sbjct: 61  MRSTPTPSLSSFNHLLSGLAKIKHYSQVFSLYNQMRLSGLSSDRCTLNILLNCLCNVNRL 120

Query: 187 IDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYD 245
            + +  F  ++     P+  TY  L++G   E  ++ A + F  M  ++G  PD V  Y 
Sbjct: 121 REGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRMQ-KLGCTPD-VVTYG 178

Query: 246 SYLITLLKGCDGI----------YETVNSLKRMMERGCNPGMTFFKLAFEE-CLTGQNLR 294
               TL+KG  G            E +N + R  E  C P +  + +  +  C  G+   
Sbjct: 179 ----TLIKGLCGTGNINIALKLHQEMLNDISRY-EINCKPNVITYNIIVDGLCKVGRE-D 232

Query: 295 GAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNIL 354
            A+ ++  M  + G  P    YN +I  +C + +   + +LLDEM+  G  PD+ T+N+L
Sbjct: 233 EAKQLFEEMKTQ-GMIPSIISYNSLIHGFCCAGKWEESKRLLDEMLDQGLQPDMVTFNVL 291

Query: 355 FEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHC 414
            + L K  K+ EA  L   M+++  V +     + +  +    D   A + +  M    C
Sbjct: 292 IDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGC 351

Query: 415 SDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEE 474
                + N+L+ G      + EA+K    M   G +        L + +  A K    ++
Sbjct: 352 EPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLLKGIFLAGKVDDAKK 411

Query: 475 LLKKCKAH 482
           L    KAH
Sbjct: 412 LFSVMKAH 419



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 61/240 (25%), Positives = 99/240 (41%), Gaps = 13/240 (5%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           ++  + + Y    +V++A+  ++ M   G + +V   +SLL  I   GK  DA +   V+
Sbjct: 357 SYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVM 416

Query: 197 DGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG- 254
               I  ++ TY I L+G  K   +  A K F E+         N       L  L+ G 
Sbjct: 417 KAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFTEL------KSSNFKLEIENLNCLIDGL 470

Query: 255 CD-GIYETVNSL-KRMMERGCNPGMTFFKLAFEE-CLTGQNLRGAEFIWGAMVGRIGFRP 311
           C  G  ET   L +++   G  P +  + +     C  GQ +  A  +   M    G  P
Sbjct: 471 CKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQ-VDKANVLIQKMEAN-GCTP 528

Query: 312 DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLF 371
           D   YN ++  +  SN+    ++LL  M      PD  T +I+ + L K  K  E   L 
Sbjct: 529 DIITYNTLMRGFYESNKLEEVVQLLHRMAQKDVSPDAITCSIVVDMLSKDEKYQECLHLL 588


>gi|225450007|ref|XP_002272339.1| PREDICTED: pentatricopeptide repeat-containing protein At2g19280
           [Vitis vinifera]
          Length = 644

 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 82/353 (23%), Positives = 149/353 (42%), Gaps = 50/353 (14%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASVFSSYVVADRVKDAITTFDVM 161
           A+ +V+D L K  L       +  M +  V L   + +SV   Y    + ++A+   DV+
Sbjct: 258 AYTIVIDSLCKMSLLKEATSILFKMTQMGVFLDSVSVSSVVDGYCKVGKSEEAM---DVL 314

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDV 220
           E +    ++F  NS +S +C DG  + A + F  + +  + PD  +Y  ++ G+ K +D+
Sbjct: 315 EVFNLSPNIFVFNSFISKLCTDGNMLKAAKVFQDMCEMGLIPDCFSYTTMMAGYCKVKDI 374

Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFF 280
           +NA K  G                                      +M++RG  P +  +
Sbjct: 375 SNALKYLG--------------------------------------KMLKRGIRPSVATY 396

Query: 281 KLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMV 340
            L  + C    N+  AE+++  M+   G  PD   YN +++ Y        A +LL  M 
Sbjct: 397 TLLIDSCCKPGNMEMAEYLFQRMITE-GLVPDVVSYNTLMNGYGKKGHLQKAFELLSMMR 455

Query: 341 YNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK---NENVLNHENCRAAVRVYMDSD 397
             G  PD+ TYNIL   L+K   + EA  + +E+ +   + +V+   N         + +
Sbjct: 456 SAGVSPDLVTYNILIHGLIKRGLVNEAKDILDELTRRGFSPDVVTFTNIIGGFSNKGNFE 515

Query: 398 DPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQ 450
           + ++    + YM E+H      T + L+ G C    + EA      M + G++
Sbjct: 516 EAFL---LFFYMSEHHLEPDVVTCSALLNGYCRTRCMAEANVLFHKMLDAGLK 565



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 92/444 (20%), Positives = 163/444 (36%), Gaps = 64/444 (14%)

Query: 63  IRVSQETVEQVLKFSY---SHPGPAVKFFRWSAYQLNDKHSP-----------------Y 102
           I +SQ  V ++L   +   +    A+ FFRWS Y +  KH+                   
Sbjct: 56  IDLSQFNVMKILNDLFEESTDAALALYFFRWSEYCMGSKHTVESVCTMIHILVSGNMNHK 115

Query: 103 AWNLVVDLLGKNCLFDAMWDAI-----KSMKKENVLSLATFASVFSSYVVADRVKDAITT 157
           A +L++ L+  N   +  W  I     ++  K  VL    +  + + YV  +  + A+  
Sbjct: 116 AMDLLLHLISYNSGEEG-WHNIFLKIHETHTKRRVLE-TVYGMLVNCYVKENMTQVALKL 173

Query: 158 FDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEK 216
              M        +   NSLL A+    +   AW FL+ +  + +  +    ++ + G+  
Sbjct: 174 ICKMRHLNIFPLIGVCNSLLKALLESEQLNLAWDFLKEMKSQGLGLNASIISLFISGYCS 233

Query: 217 ERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGC--- 273
           + ++    K   EM   +G  PD V AY   + +L K    + E  + L +M + G    
Sbjct: 234 QGNIDTGWKLLMEMKY-LGIKPD-VVAYTIVIDSLCK-MSLLKEATSILFKMTQMGVFLD 290

Query: 274 -----------------------------NPGMTFFKLAFEECLTGQNLRGAEFIWGAMV 304
                                        +P +  F     +  T  N+  A  ++  M 
Sbjct: 291 SVSVSSVVDGYCKVGKSEEAMDVLEVFNLSPNIFVFNSFISKLCTDGNMLKAAKVFQDMC 350

Query: 305 GRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKL 364
             +G  PD   Y  M++ YC   +   A+K L +M+  G  P + TY +L +   K   +
Sbjct: 351 -EMGLIPDCFSYTTMMAGYCKVKDISNALKYLGKMLKRGIRPSVATYTLLIDSCCKPGNM 409

Query: 365 WEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLL 424
             A  LF  M+    V +  +    +  Y        A +    M     S    T N+L
Sbjct: 410 EMAEYLFQRMITEGLVPDVVSYNTLMNGYGKKGHLQKAFELLSMMRSAGVSPDLVTYNIL 469

Query: 425 VAGLCDMHMLPEAVKYAKGMAEKG 448
           + GL    ++ EA      +  +G
Sbjct: 470 IHGLIKRGLVNEAKDILDELTRRG 493



 Score = 42.0 bits (97), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 53/261 (20%), Positives = 108/261 (41%), Gaps = 11/261 (4%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKT-IDAWQFLRV 195
           ++ ++ + Y     + +A+     M + G +  V     L+ + C+ G   +  + F R+
Sbjct: 360 SYTTMMAGYCKVKDISNALKYLGKMLKRGIRPSVATYTLLIDSCCKPGNMEMAEYLFQRM 419

Query: 196 VDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
           +   + PD  +Y  L+ G+ K+  +  A +    M+   G  PD V  Y+  +  L+K  
Sbjct: 420 ITEGLVPDVVSYNTLMNGYGKKGHLQKAFELL-SMMRSAGVSPDLV-TYNILIHGLIKR- 476

Query: 256 DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRG---AEFIWGAMVGRIGFRPD 312
             + E  + L  +  RG +P +    + F   + G + +G     F+    +      PD
Sbjct: 477 GLVNEAKDILDELTRRGFSPDV----VTFTNIIGGFSNKGNFEEAFLLFFYMSEHHLEPD 532

Query: 313 THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFN 372
               + +++ YC +     A  L  +M+  G   D+  YN L         + +A  L +
Sbjct: 533 VVTCSALLNGYCRTRCMAEANVLFHKMLDAGLKADVILYNSLIHGFCSLGNIDDACHLVS 592

Query: 373 EMVKNENVLNHENCRAAVRVY 393
            M+++  + N+    A V  Y
Sbjct: 593 MMIEHGIMPNNITHHALVLGY 613



 Score = 39.3 bits (90), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 41/175 (23%), Positives = 70/175 (40%), Gaps = 32/175 (18%)

Query: 308 GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEA 367
           G   +  + ++ IS YC         KLL EM Y G  PD+  Y I+ + L K   L EA
Sbjct: 216 GLGLNASIISLFISGYCSQGNIDTGWKLLMEMKYLGIKPDVVAYTIVIDSLCKMSLLKEA 275

Query: 368 SGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWK--------YMIENHCSDLSE 419
           + +  +M +    L+  +  + V  Y        A+   +        ++  +  S L  
Sbjct: 276 TSILFKMTQMGVFLDSVSVSSVVDGYCKVGKSEEAMDVLEVFNLSPNIFVFNSFISKLCT 335

Query: 420 TGNLLVAG-----LCDMHMLPE-------------------AVKYAKGMAEKGIQ 450
            GN+L A      +C+M ++P+                   A+KY   M ++GI+
Sbjct: 336 DGNMLKAAKVFQDMCEMGLIPDCFSYTTMMAGYCKVKDISNALKYLGKMLKRGIR 390


>gi|224059754|ref|XP_002299984.1| predicted protein [Populus trichocarpa]
 gi|222847242|gb|EEE84789.1| predicted protein [Populus trichocarpa]
          Length = 610

 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 84/386 (21%), Positives = 153/386 (39%), Gaps = 43/386 (11%)

Query: 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLS-LATFASVFSSYVVADRVKDAITTFDV 160
           Y  N++V+ L K+  FD +   +  M+   + + + T+ ++  +Y     +++A    + 
Sbjct: 119 YTLNIMVNALCKDGKFDDVKSFLSEMEGNGIYADMVTYNTLIGAYCREGLLEEAFEIMNS 178

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERD 219
           M   G K  +F  N++++ +C+ G+   A   L  +++  + PD  TY  LL    +  +
Sbjct: 179 MADKGLKPSLFTYNAIINGLCKKGRYARAKGILIEMLNIGLSPDTTTYNTLLVESCRRDN 238

Query: 220 VANAKKTFGEMVIE----------------------------------VGWDPDNVPAYD 245
            + AK+ FGEM+ +                                   G  PDNV    
Sbjct: 239 FSEAKEIFGEMLRQGVVPDLVSFSSLIAVFSRNRHLDQALVYFRDMKKFGLVPDNVI--- 295

Query: 246 SYLITLLKGC--DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAM 303
            Y + +   C    + E +     M+E+GC   +  +          + L  A+ ++  M
Sbjct: 296 -YTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDADKLFDEM 354

Query: 304 VGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRK 363
           V R G  PD + +  +I  +C       A+ L   M      PDI  YN L +   K  +
Sbjct: 355 VER-GALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKVGE 413

Query: 364 LWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNL 423
           + +AS L++ M+  +   NH      +  Y        A + W  MIE        T N 
Sbjct: 414 MEKASELWDGMISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMIEKGIKPTLVTCNT 473

Query: 424 LVAGLCDMHMLPEAVKYAKGMAEKGI 449
           ++ G C      +A ++   M  KG+
Sbjct: 474 VIKGYCRSGDSSKADEFLGRMIAKGV 499



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 86/388 (22%), Positives = 155/388 (39%), Gaps = 49/388 (12%)

Query: 105 NLVVDLLGKNCL----FDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFD 159
           NLV DLL +  +         +A + ++ +  L S+    S+    V  D V+ A     
Sbjct: 48  NLVFDLLIRTYVQARKLREGTEAFRILRSKGYLVSINACNSLLGGLVKIDWVELAWEVHR 107

Query: 160 VMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-------------------- 199
            + + G + +V+ LN +++A+C+DGK  D   FL  ++G                     
Sbjct: 108 EVVRSGIELNVYTLNIMVNALCKDGKFDDVKSFLSEMEGNGIYADMVTYNTLIGAYCREG 167

Query: 200 ----------------IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPA 243
                           +KP   TY  ++ G  K+   A AK    EM + +G  PD    
Sbjct: 168 LLEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILIEM-LNIGLSPDTT-- 224

Query: 244 YDSYLITLLKGC--DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWG 301
             +Y   L++ C  D   E       M+ +G  P +  F          ++L  A  ++ 
Sbjct: 225 --TYNTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLIAVFSRNRHLDQA-LVYF 281

Query: 302 AMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKG 361
             + + G  PD  +Y +++  YC +     A+K+ DEM+  G   D+  YN +   L K 
Sbjct: 282 RDMKKFGLVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKE 341

Query: 362 RKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETG 421
           + L +A  LF+EMV+   + +       +  +    +   A+  +  M + +        
Sbjct: 342 KMLTDADKLFDEMVERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAY 401

Query: 422 NLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
           N L+ G C +  + +A +   GM  + I
Sbjct: 402 NTLIDGFCKVGEMEKASELWDGMISRKI 429



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 82/317 (25%), Positives = 135/317 (42%), Gaps = 9/317 (2%)

Query: 136 ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRV 195
            T+ ++       D   +A   F  M + G   D+ + +SL++   R+     A  + R 
Sbjct: 224 TTYNTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLIAVFSRNRHLDQALVYFRD 283

Query: 196 VDG-RIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG 254
           +    + PDN  Y +L+ G+ +  ++  A K   EM +E G   D V AY++ L  L K 
Sbjct: 284 MKKFGLVPDNVIYTVLMHGYCRNGNMLEALKIRDEM-LEQGCVLD-VIAYNTILNGLCK- 340

Query: 255 CDGIYETVNSL-KRMMERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD 312
            + +    + L   M+ERG  P   TF  L    C  G N+  A  ++G M  R   +PD
Sbjct: 341 -EKMLTDADKLFDEMVERGALPDFYTFTTLIHGHCQDG-NMTKALSLFGTMTQR-NIKPD 397

Query: 313 THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFN 372
              YN +I  +C   E   A +L D M+    FP+  TY IL         + EA  L++
Sbjct: 398 IVAYNTLIDGFCKVGEMEKASELWDGMISRKIFPNHITYGILINAYCSVGHVSEAFRLWD 457

Query: 373 EMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMH 432
            M++         C   ++ Y  S D   A +F   MI    +    + N L+ G     
Sbjct: 458 VMIEKGIKPTLVTCNTVIKGYCRSGDSSKADEFLGRMIAKGVAPDHISYNTLINGFVRED 517

Query: 433 MLPEAVKYAKGMAEKGI 449
            + +A  +   M ++G+
Sbjct: 518 NMDKAFLWINKMEKEGL 534



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 67/305 (21%), Positives = 130/305 (42%), Gaps = 15/305 (4%)

Query: 115 CLFDAMWDAIK----SMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDV 170
           C    M +A+K     +++  VL +  + ++ +       + DA   FD M + G   D 
Sbjct: 304 CRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDADKLFDEMVERGALPDF 363

Query: 171 FALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGE 229
           +   +L+   C+DG    A      +  R IKPD   Y  L++G+ K  ++  A + +  
Sbjct: 364 YTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKVGEMEKASELWDG 423

Query: 230 MVIEVGWDPDNVPAYDSYLITLLKGCD--GIYETVNSLKRMMERGCNPGMTFFKLAFEE- 286
           M+          P + +Y I +   C    + E       M+E+G  P +       +  
Sbjct: 424 MI-----SRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMIEKGIKPTLVTCNTVIKGY 478

Query: 287 CLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFP 346
           C +G + +  EF+ G M+ + G  PD   YN +I+ +   +    A   +++M   G  P
Sbjct: 479 CRSGDSSKADEFL-GRMIAK-GVAPDHISYNTLINGFVREDNMDKAFLWINKMEKEGLLP 536

Query: 347 DIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFW 406
           DI TYN++     +  ++ EA  +  +M++     +     A +  ++  D+   A +F 
Sbjct: 537 DIITYNVVMNGFCRQGRMQEAELVLRKMIEKGINPDRSTYTALINGHVTQDNLNEAFRFH 596

Query: 407 KYMIE 411
             M++
Sbjct: 597 DEMLQ 601



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 84/353 (23%), Positives = 151/353 (42%), Gaps = 23/353 (6%)

Query: 110 LLGKNCLFDAMWDA---IKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVMEQYG 165
           LL ++C  D   +A      M ++ V+  L +F+S+ + +     +  A+  F  M+++G
Sbjct: 229 LLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLIAVFSRNRHLDQALVYFRDMKKFG 288

Query: 166 CKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKP----DNDTYAILLEGWEKERDVA 221
              D      L+   CR+G  ++A   L++ D  ++     D   Y  +L G  KE+ + 
Sbjct: 289 LVPDNVIYTVLMHGYCRNGNMLEA---LKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLT 345

Query: 222 NAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG-C-DG-IYETVNSLKRMMERGCNPGMT 278
           +A K F EMV E G  PD          TL+ G C DG + + ++    M +R   P + 
Sbjct: 346 DADKLFDEMV-ERGALPDFYT-----FTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIV 399

Query: 279 FFKLAFEE-CLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLD 337
            +    +  C  G+  + +E +W  M+ R  F P+   Y ++I+ YC       A +L D
Sbjct: 400 AYNTLIDGFCKVGEMEKASE-LWDGMISRKIF-PNHITYGILINAYCSVGHVSEAFRLWD 457

Query: 338 EMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSD 397
            M+  G  P + T N + +   +     +A      M+      +H +    +  ++  D
Sbjct: 458 VMIEKGIKPTLVTCNTVIKGYCRSGDSSKADEFLGRMIAKGVAPDHISYNTLINGFVRED 517

Query: 398 DPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQ 450
           +   A  +   M +        T N+++ G C    + EA    + M EKGI 
Sbjct: 518 NMDKAFLWINKMEKEGLLPDIITYNVVMNGFCRQGRMQEAELVLRKMIEKGIN 570



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 62/258 (24%), Positives = 106/258 (41%), Gaps = 45/258 (17%)

Query: 94  QLNDKHSPYAWNLVVD---LLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADR 150
           Q N K    A+N ++D    +G+      +WD + S K     +  T+  + ++Y     
Sbjct: 391 QRNIKPDIVAYNTLIDGFCKVGEMEKASELWDGMISRKI--FPNHITYGILINAYCSVGH 448

Query: 151 VKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAI 209
           V +A   +DVM + G K  +   N+++   CR G +  A +FL R++   + PD+ +Y  
Sbjct: 449 VSEAFRLWDVMIEKGIKPTLVTCNTVIKGYCRSGDSSKADEFLGRMIAKGVAPDHISYNT 508

Query: 210 LLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMM 269
           L+ G+ +E ++  A     +M  E G  PD        +IT        Y  V      M
Sbjct: 509 LINGFVREDNMDKAFLWINKMEKE-GLLPD--------IIT--------YNVV------M 545

Query: 270 ERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNET 329
              C  G                ++ AE +   M+ + G  PD   Y  +I+ +   +  
Sbjct: 546 NGFCRQG---------------RMQEAELVLRKMIEK-GINPDRSTYTALINGHVTQDNL 589

Query: 330 GAAMKLLDEMVYNGAFPD 347
             A +  DEM+  G  PD
Sbjct: 590 NEAFRFHDEMLQRGFAPD 607


>gi|359474464|ref|XP_003631475.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Vitis vinifera]
 gi|297742067|emb|CBI33854.3| unnamed protein product [Vitis vinifera]
          Length = 767

 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 68/255 (26%), Positives = 125/255 (49%), Gaps = 13/255 (5%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           S+AT   +  ++    RV++A+   + M+  G   ++F  N++++ +C++ K+  A +  
Sbjct: 499 SIATCNVIIDAHCREGRVEEALNLMNEMQTQGIFPNLFTYNAVINRLCKERKSERALELF 558

Query: 194 RVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
            ++  R + P    Y+ L++G+ K+ +   A   +  M +++G  PD V AY + LI +L
Sbjct: 559 PLMLKRNVLPSVVVYSTLIDGFAKQSNSQKALMLYARM-LKIGVTPDMV-AY-TILINIL 615

Query: 253 KGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTG----QNLRGAEFIWGAMVGRIG 308
                + E  N  K+M E G  P     K+++   + G     ++R A  ++  M+ R G
Sbjct: 616 CHRSRMCEAYNLFKKMTENGMTPD----KISYTSVIAGFCRIGDMRKAWALFNEMLQR-G 670

Query: 309 FRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEAS 368
             P    Y  ++  YC  N    A  L+DEM   G  PD+ TYN+L     +   L +A 
Sbjct: 671 HLPTVVTYTSLVDGYCKMNRIDIADMLIDEMKRKGITPDVVTYNVLIAAHRRRGNLDKAL 730

Query: 369 GLFNEMVKNENVLNH 383
            + NEM +N  + +H
Sbjct: 731 EMLNEMKENGVLPDH 745



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 78/330 (23%), Positives = 130/330 (39%), Gaps = 52/330 (15%)

Query: 169 DVFALNSLLSAICRDGKTIDAWQFLRVVDG-RIKPDNDTYAILLEGWEKERDVANA---- 223
           +V+  N+++  +C+ G+  +A + L  +    I PD  TY+IL+ G+ K+ DV       
Sbjct: 324 NVYCYNAIIHGLCKKGELDEALKVLEEMKSCGISPDVYTYSILIHGFCKQGDVEKGLYLI 383

Query: 224 -----------------------KKTFGEMVIEVGWDPDNVP-AYDSYLITLLKGCDGIY 259
                                  KK   ++ +++  D       YD    ++L     + 
Sbjct: 384 EEMKYSNMEPSLVSYSSLFHGLCKKRLSDISLDIFRDLGAAGYKYDQTAYSILIKGFCMQ 443

Query: 260 ETVNSLKRMMERGCNPGMT-----FFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTH 314
             ++S  ++ME      +      F  L    C  G  +   EF    + G  G  P   
Sbjct: 444 GDLDSAHKLMEEMVRNNLAPDPSNFESLVHGFCKMGLWVNALEFFNMMLEG--GILPSIA 501

Query: 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
             N++I  +C       A+ L++EM   G FP++ TYN +   L K RK   A  LF  M
Sbjct: 502 TCNVIIDAHCREGRVEEALNLMNEMQTQGIFPNLFTYNAVINRLCKERKSERALELFPLM 561

Query: 375 VKNENVLNHENCRAAVRVYMDSDDPYV-------AIKFWKYMIENHCSDLSETGNLLVAG 427
           +K  NVL       +V VY    D +        A+  +  M++   +       +L+  
Sbjct: 562 LK-RNVL------PSVVVYSTLIDGFAKQSNSQKALMLYARMLKIGVTPDMVAYTILINI 614

Query: 428 LCDMHMLPEAVKYAKGMAEKGIQVTPFALS 457
           LC    + EA    K M E G+  TP  +S
Sbjct: 615 LCHRSRMCEAYNLFKKMTENGM--TPDKIS 642



 Score = 48.1 bits (113), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 73/329 (22%), Positives = 121/329 (36%), Gaps = 46/329 (13%)

Query: 152 KDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYAIL 210
           + A    + ME+ G    V   ++ +  +CR G    A  F+R ++      +   Y  +
Sbjct: 272 RQATEILEEMERNGESPTVVTYSTYIYGLCRVGYVESALDFVRSLISANGLVNVYCYNAI 331

Query: 211 LEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD---GIYETVNSLKR 267
           + G  K+ ++  A K   EM    G  PD V  Y   +    K  D   G+Y     ++ 
Sbjct: 332 IHGLCKKGELDEALKVLEEMK-SCGISPD-VYTYSILIHGFCKQGDVEKGLY----LIEE 385

Query: 268 MMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSN 327
           M      P +  +   F   L  + L          +G  G++ D   Y+++I  +C   
Sbjct: 386 MKYSNMEPSLVSYSSLFHG-LCKKRLSDISLDIFRDLGAAGYKYDQTAYSILIKGFCMQG 444

Query: 328 ETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCR 387
           +  +A KL++EMV N   PD       FE LV                       H  C+
Sbjct: 445 DLDSAHKLMEEMVRNNLAPDPSN----FESLV-----------------------HGFCK 477

Query: 388 AAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEK 447
             + V         A++F+  M+E        T N+++   C    + EA+     M  +
Sbjct: 478 MGLWVN--------ALEFFNMMLEGGILPSIATCNVIIDAHCREGRVEEALNLMNEMQTQ 529

Query: 448 GIQVTPFALSKLKQILIKARKEAVYEELL 476
           GI    F  + +   L K RK     EL 
Sbjct: 530 GIFPNLFTYNAVINRLCKERKSERALELF 558


>gi|302759663|ref|XP_002963254.1| hypothetical protein SELMODRAFT_79771 [Selaginella moellendorffii]
 gi|300168522|gb|EFJ35125.1| hypothetical protein SELMODRAFT_79771 [Selaginella moellendorffii]
          Length = 495

 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 72/282 (25%), Positives = 127/282 (45%), Gaps = 15/282 (5%)

Query: 100 SPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFD 159
           + +  N++V  L KN   DA ++  K +  E  L   ++  +      AD++  A+  F 
Sbjct: 106 TTFIVNMLVSCLCKNGKVDAAYELYKRLSDECSLDRISYNMLTYGLCKADQIDRALAVFG 165

Query: 160 VMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGR----IKPDNDTYAILLEGW 214
            ME+      +   N LL   CR G+   A   L  +++G+    + PD  +Y  ++ G+
Sbjct: 166 EMEENAVVPSLLTYNGLLYGYCRAGRMEQAMTLLEEMIEGKKGSDVVPDMYSYNTVISGF 225

Query: 215 EKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC--DGIYETVNSL-KRMMER 271
            K R +  A+     M I+ G  P NV  ++    TLL G    G  +  N++ + M+ER
Sbjct: 226 CKARQLPTARYVLRRM-IKSGCSP-NVVTFN----TLLDGLCLTGKLDEANAMFEYMVER 279

Query: 272 GCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGA 331
            C P    + +          +  A   +  M+ R G  P+ + Y  +I   C +N+   
Sbjct: 280 NCEPTAVTYTVLITGHARALRIDKANDYFVDMLRR-GVEPNVYTYTALIGGLCDANKVED 338

Query: 332 AMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNE 373
           A+++L  M   G  P++ TY  +   L KG ++  A+ LFN+
Sbjct: 339 ALEILKRMSSTGREPNVVTYTRVIGALCKGGQIERATKLFND 380



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 90/383 (23%), Positives = 161/383 (42%), Gaps = 64/383 (16%)

Query: 81  PGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNC-------LFDAMWDAIKSMKKENVL 133
           P  A + F+W+A Q + +H+ + +N  ++ L K         +FD M      + KE + 
Sbjct: 17  PKLASRVFKWAARQEDFEHTVFTYNAYLNALVKGGHGSKARKIFDDM------LYKECLP 70

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           ++ T+  V        +   A+     ME        F +N L+S +C++GK   A++  
Sbjct: 71  NIYTYGIVLRGLCDDAKTDAALELLQDMESKMLTPTTFIVNMLVSCLCKNGKVDAAYELY 130

Query: 194 RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLK 253
           + +      D  +Y +L  G  K   +  A   FGEM      +   VP+  +Y      
Sbjct: 131 KRLSDECSLDRISYNMLTYGLCKADQIDRALAVFGEM-----EENAVVPSLLTY------ 179

Query: 254 GCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDT 313
             +G+        RM +      MT      EE + G+  +G++ +           PD 
Sbjct: 180 --NGLLYGYCRAGRMEQ-----AMTL----LEEMIEGK--KGSDVV-----------PDM 215

Query: 314 HMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNE 373
           + YN +IS +C + +   A  +L  M+ +G  P++ T+N L + L    KL EA+ +F  
Sbjct: 216 YSYNTVISGFCKARQLPTARYVLRRMIKSGCSPNVVTFNTLLDGLCLTGKLDEANAMFEY 275

Query: 374 MVKNE--------NVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLV 425
           MV+           VL   + R A+R+   +D       ++  M+         T   L+
Sbjct: 276 MVERNCEPTAVTYTVLITGHAR-ALRIDKAND-------YFVDMLRRGVEPNVYTYTALI 327

Query: 426 AGLCDMHMLPEAVKYAKGMAEKG 448
            GLCD + + +A++  K M+  G
Sbjct: 328 GGLCDANKVEDALEILKRMSSTG 350


>gi|242055005|ref|XP_002456648.1| hypothetical protein SORBIDRAFT_03g040130 [Sorghum bicolor]
 gi|241928623|gb|EES01768.1| hypothetical protein SORBIDRAFT_03g040130 [Sorghum bicolor]
          Length = 702

 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 81/317 (25%), Positives = 133/317 (41%), Gaps = 15/317 (4%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           T+  +      +  V  A   +  M + G   DV   NSL+   C  G+T +AW+F    
Sbjct: 301 TYGILIHGLCRSGDVDSAARVYSDMVKAGLVLDVSVYNSLIKGFCEVGRTGEAWKFWDST 360

Query: 197 DGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG-C 255
                    TY I+ +G      V+ A +   ++  +    PD V        TL+ G C
Sbjct: 361 GFSGIRQITTYNIMTKGLLDSGMVSEATELLKQLENDASCSPDKVT-----FGTLIHGLC 415

Query: 256 DGIYETVNSLKRMMERGCNPG-----MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFR 310
           +  Y   N    ++E   N G      ++  +    C  G+    A  ++  MV + G +
Sbjct: 416 ENGY--ANRAFEILEDARNSGEELDVFSYSSMINRFCKDGRT-HDANEVYKNMV-KDGCK 471

Query: 311 PDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGL 370
           P++H+YN +I+ +C  ++   A+K+  EM  NG  P I TYN L + L K  K  EAS L
Sbjct: 472 PNSHVYNALINGFCRVSKINDAIKIYIEMTSNGCCPTIITYNTLIDGLCKAEKYQEASSL 531

Query: 371 FNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCD 430
             EM++     +     + +R         VA++ W  +++          N+L+ GLC 
Sbjct: 532 TKEMLERGFKPDIRTYASLIRGLCRDKKVDVALRIWDEILDAGLQVDVMVHNILIHGLCS 591

Query: 431 MHMLPEAVKYAKGMAEK 447
              + EA      M EK
Sbjct: 592 AGKVDEAFCIYLEMKEK 608



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 74/320 (23%), Positives = 126/320 (39%), Gaps = 59/320 (18%)

Query: 158 FDVME---QYGCKHDVFALNSLLSAICRDGKTIDAWQFLR--VVDGRIKPDNDTYAILLE 212
           F+++E     G + DVF+ +S+++  C+DG+T DA +  +  V DG  KP++  Y  L+ 
Sbjct: 424 FEILEDARNSGEELDVFSYSSMINRFCKDGRTHDANEVYKNMVKDG-CKPNSHVYNALIN 482

Query: 213 GWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERG 272
           G+ +   + +A K + EM                                         G
Sbjct: 483 GFCRVSKINDAIKIYIEMT--------------------------------------SNG 504

Query: 273 CNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAA 332
           C P +  +    +     +  + A  +   M+ R GF+PD   Y  +I   C   +   A
Sbjct: 505 CCPTIITYNTLIDGLCKAEKYQEASSLTKEMLER-GFKPDIRTYASLIRGLCRDKKVDVA 563

Query: 333 MKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRV 392
           +++ DE++  G   D+  +NIL   L    K+ EA  ++ EM         +NC   +  
Sbjct: 564 LRIWDEILDAGLQVDVMVHNILIHGLCSAGKVDEAFCIYLEM-------KEKNCSPNLVT 616

Query: 393 YMDSDDPYVAI-------KFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMA 445
           Y    D +  I         W  +++N       T N  + GLC  +  PE V     + 
Sbjct: 617 YNTLMDGFYEIGSIDKAASLWTAILDNGLKPDIVTYNTRIKGLCSCNRTPEGVLLLNEVL 676

Query: 446 EKGIQVTPFALSKLKQILIK 465
             GI  T    S L + +IK
Sbjct: 677 ATGIMPTVITWSILVRAVIK 696



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/224 (23%), Positives = 103/224 (45%), Gaps = 5/224 (2%)

Query: 138 FASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VV 196
           + ++ + +    ++ DAI  +  M   GC   +   N+L+  +C+  K  +A    + ++
Sbjct: 477 YNALINGFCRVSKINDAIKIYIEMTSNGCCPTIITYNTLIDGLCKAEKYQEASSLTKEML 536

Query: 197 DGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD 256
           +   KPD  TYA L+ G  +++ V  A + + E +++ G   D +    + LI  L    
Sbjct: 537 ERGFKPDIRTYASLIRGLCRDKKVDVALRIWDE-ILDAGLQVDVM--VHNILIHGLCSAG 593

Query: 257 GIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMY 316
            + E       M E+ C+P +  +    +      ++  A  +W A++   G +PD   Y
Sbjct: 594 KVDEAFCIYLEMKEKNCSPNLVTYNTLMDGFYEIGSIDKAASLWTAILDN-GLKPDIVTY 652

Query: 317 NMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVK 360
           N  I   C  N T   + LL+E++  G  P + T++IL   ++K
Sbjct: 653 NTRIKGLCSCNRTPEGVLLLNEVLATGIMPTVITWSILVRAVIK 696



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 77/311 (24%), Positives = 123/311 (39%), Gaps = 13/311 (4%)

Query: 140 SVFSSYVVADRVKDAITTF-DVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDG 198
           S FS  ++ D    A+  F D+    GC   V + N+LL A  R  +  DA  F   +  
Sbjct: 91  SAFSRALMPDA---ALAAFRDLPSLLGCNPGVRSHNTLLDAFVRARRYSDADAFFASLSH 147

Query: 199 -----RIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLK 253
                RI P+  TY I+L       DV  A   F  +    G  PD V    S L++ L 
Sbjct: 148 GAFGRRIAPNLQTYNIILRSLCARGDVDRAVSLFSSLR-RRGVAPDRVTY--STLMSGLA 204

Query: 254 GCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDT 313
             D +   ++ L  M   G       +      C        A  +W  +V   G  P+ 
Sbjct: 205 KHDQLDNALDLLDEMPNYGVQADAVCYNALLSGCFRTGMFEKAMKVWEQLVRDPGASPNL 264

Query: 314 HMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNE 373
             Y +M+   C       A ++   M+ N    D  TY IL   L +   +  A+ ++++
Sbjct: 265 ATYKVMLDGLCKLGRFKEAGEVWSRMMANNHQADTVTYGILIHGLCRSGDVDSAARVYSD 324

Query: 374 MVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHM 433
           MVK   VL+     + ++ + +      A KFW     +    ++ T N++  GL D  M
Sbjct: 325 MVKAGLVLDVSVYNSLIKGFCEVGRTGEAWKFWDSTGFSGIRQIT-TYNIMTKGLLDSGM 383

Query: 434 LPEAVKYAKGM 444
           + EA +  K +
Sbjct: 384 VSEATELLKQL 394



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 86/387 (22%), Positives = 150/387 (38%), Gaps = 46/387 (11%)

Query: 104 WNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVME 162
           +N+++  L      D       S+++  V     T++++ S     D++ +A+   D M 
Sbjct: 161 YNIILRSLCARGDVDRAVSLFSSLRRRGVAPDRVTYSTLMSGLAKHDQLDNALDLLDEMP 220

Query: 163 QYGCKHDVFALNSLLSAICRDG---KTIDAW-QFLR-------------VVDGRIK---- 201
            YG + D    N+LLS   R G   K +  W Q +R             ++DG  K    
Sbjct: 221 NYGVQADAVCYNALLSGCFRTGMFEKAMKVWEQLVRDPGASPNLATYKVMLDGLCKLGRF 280

Query: 202 ----------------PDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYD 245
                            D  TY IL+ G  +  DV +A + + +MV + G   D V  Y+
Sbjct: 281 KEAGEVWSRMMANNHQADTVTYGILIHGLCRSGDVDSAARVYSDMV-KAGLVLD-VSVYN 338

Query: 246 SYLITLLKGCDGIYETVNSLKRMMERGCNP--GMTFFKLAFEECLTGQNLRGAEFIWGAM 303
           S    L+KG   +  T  + K     G +    +T + +  +  L    +  A  +   +
Sbjct: 339 S----LIKGFCEVGRTGEAWKFWDSTGFSGIRQITTYNIMTKGLLDSGMVSEATELLKQL 394

Query: 304 VGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRK 363
                  PD   +  +I   C +     A ++L++   +G   D+ +Y+ +     K  +
Sbjct: 395 ENDASCSPDKVTFGTLIHGLCENGYANRAFEILEDARNSGEELDVFSYSSMINRFCKDGR 454

Query: 364 LWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNL 423
             +A+ ++  MVK+    N     A +  +        AIK +  M  N C     T N 
Sbjct: 455 THDANEVYKNMVKDGCKPNSHVYNALINGFCRVSKINDAIKIYIEMTSNGCCPTIITYNT 514

Query: 424 LVAGLCDMHMLPEAVKYAKGMAEKGIQ 450
           L+ GLC      EA    K M E+G +
Sbjct: 515 LIDGLCKAEKYQEASSLTKEMLERGFK 541


>gi|8778269|gb|AAF79278.1|AC068602_1 F14D16.2 [Arabidopsis thaliana]
          Length = 977

 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 83/349 (23%), Positives = 141/349 (40%), Gaps = 44/349 (12%)

Query: 52  PTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLL 111
           P  E+ L    +R+      QVLK   +  G A+ FF W   Q   KH  + +  +V  L
Sbjct: 433 PAAEEALQNLGLRIDAYQANQVLK-QMNDYGNALGFFYWLKRQPGFKHDGHTYTTMVGNL 491

Query: 112 GKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDV 170
           G+   F A+   +  M ++    +  T+  +  SY  A+ + +A+  F+ M++ GCK D 
Sbjct: 492 GRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDR 551

Query: 171 FALNSLLSAICRDG---KTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTF 227
               +L+    + G     +D +Q  R+  G + PD  TY++++    K   +  A K F
Sbjct: 552 VTYCTLIDIHAKAGFLDIAMDMYQ--RMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLF 609

Query: 228 GEMVIE----------------------------------VGWDPDNVPAYDSYLITLLK 253
            EMV +                                   G++PD V    S ++ +L 
Sbjct: 610 CEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTY--SIVMEVLG 667

Query: 254 GCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDT 313
            C  + E       M ++   P    + L  +      N+  A   + AM+   G RP+ 
Sbjct: 668 HCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQWYQAML-HAGLRPNV 726

Query: 314 HMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGR 362
              N ++S +   N+   A +LL  M+  G  P +QTY +L      GR
Sbjct: 727 PTCNSLLSTFLRVNKIAEAYELLQNMLALGLRPSLQTYTLLLSCCTDGR 775



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 92/216 (42%), Gaps = 5/216 (2%)

Query: 159 DVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKER 218
           + ++  G + D +  N +L  +   G  +  + +L+   G  K D  TY  ++    + +
Sbjct: 437 EALQNLGLRIDAYQANQVLKQMNDYGNALGFFYWLKRQPG-FKHDGHTYTTMVGNLGRAK 495

Query: 219 DVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMT 278
                 K   EMV + G  P+ V  Y+  LI      + + E +N   +M E GC P   
Sbjct: 496 QFGAINKLLDEMVRD-GCQPNTV-TYNR-LIHSYGRANYLNEAMNVFNQMQEAGCKPDRV 552

Query: 279 FFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDE 338
            +    +       L  A  ++  M    G  PDT  Y+++I+    +    AA KL  E
Sbjct: 553 TYCTLIDIHAKAGFLDIAMDMYQRMQAG-GLSPDTFTYSVIINCLGKAGHLPAAHKLFCE 611

Query: 339 MVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
           MV  G  P++ TYNI+ +   K R    A  L+ +M
Sbjct: 612 MVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDM 647



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 3/170 (1%)

Query: 308 GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEA 367
           GF+ D H Y  M+     + + GA  KLLDEMV +G  P+  TYN L     +   L EA
Sbjct: 476 GFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEA 535

Query: 368 SGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAG 427
             +FN+M +     +       + ++  +    +A+  ++ M     S  + T ++++  
Sbjct: 536 MNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINC 595

Query: 428 LCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLK 477
           L     LP A K    M ++G        + +  +  KAR    Y+  LK
Sbjct: 596 LGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARN---YQNALK 642


>gi|242054609|ref|XP_002456450.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
 gi|241928425|gb|EES01570.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
          Length = 669

 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 73/312 (23%), Positives = 134/312 (42%), Gaps = 10/312 (3%)

Query: 169 DVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKP-DNDTYAILLEGWEKERDVANAKKTF 227
           DV+    L+  +CR G+T DA + LR  +G   P D   Y  L+ G+ +   +  A++  
Sbjct: 75  DVYLCTKLIRNLCRRGRTSDAARVLRAAEGSGSPVDVFAYNTLVAGYCRYGHLDAARRLI 134

Query: 228 GEMVIEVGWDPDNVPAYD-SYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEE 286
           G M +     PD   AY  + LI +L     + + ++ L  M+ RGC P +  + +  E 
Sbjct: 135 GSMPVA----PD---AYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLLEA 187

Query: 287 CLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFP 346
                    A  +   M  + G  P+   YN++I+  C       A +LL+ +   G  P
Sbjct: 188 MCRNSGFEQAMAVLDEMRAK-GCTPNIVTYNVIINGMCREGRVDDARELLNRLPSYGFQP 246

Query: 347 DIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFW 406
           D  +Y  L + L   ++  +   LF EM++   + N       +R +        AI+  
Sbjct: 247 DTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVL 306

Query: 407 KYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKA 466
           + M E+ C+  +   N+++  +C    + +A K    M   G      + + + + L +A
Sbjct: 307 EQMTEHGCATNTTLCNIVINSICKQGRVDDAFKLLNDMGSYGCNPDTISYTTVLKGLCRA 366

Query: 467 RKEAVYEELLKK 478
            +    +ELL +
Sbjct: 367 ERWDDAKELLNE 378



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 83/307 (27%), Positives = 132/307 (42%), Gaps = 11/307 (3%)

Query: 150 RVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYA 208
           RV DA++  D M + GC+ +V     LL A+CR+     A   L  +  +   P+  TY 
Sbjct: 158 RVADALSLLDDMLRRGCQPNVVTYTVLLEAMCRNSGFEQAMAVLDEMRAKGCTPNIVTYN 217

Query: 209 ILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG--CDGIYETVNSL- 265
           +++ G  +E  V +A++    +    G+ PD V    SY  TLLKG      ++ V  L 
Sbjct: 218 VIINGMCREGRVDDARELLNRLP-SYGFQPDTV----SY-TTLLKGLCASKRWDDVEELF 271

Query: 266 KRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCY 325
             MME+ C P    F +       G  +  A  +   M    G   +T + N++I+  C 
Sbjct: 272 AEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLEQMTEH-GCATNTTLCNIVINSICK 330

Query: 326 SNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHEN 385
                 A KLL++M   G  PD  +Y  + + L +  +  +A  L NEMV+N    N   
Sbjct: 331 QGRVDDAFKLLNDMGSYGCNPDTISYTTVLKGLCRAERWDDAKELLNEMVRNNCPPNEVT 390

Query: 386 CRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMA 445
               + +         AI   + M E+ C+    T N LV G C    +  A++  + M 
Sbjct: 391 FNTFICILCQKGLIEQAIMLIEQMSEHGCTVGVVTYNALVNGFCVQGHIDSALELFRSMP 450

Query: 446 EKGIQVT 452
            K   +T
Sbjct: 451 CKPNTIT 457



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 62/265 (23%), Positives = 122/265 (46%), Gaps = 17/265 (6%)

Query: 121 WDAIKS-----MKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNS 175
           WD ++      M+K  + +  TF  +   +     V+ AI   + M ++GC  +    N 
Sbjct: 264 WDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLEQMTEHGCATNTTLCNI 323

Query: 176 LLSAICRDGKTIDAWQFLRVVDG-RIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEV 234
           ++++IC+ G+  DA++ L  +      PD  +Y  +L+G  +     +AK+   EMV   
Sbjct: 324 VINSICKQGRVDDAFKLLNDMGSYGCNPDTISYTTVLKGLCRAERWDDAKELLNEMV--R 381

Query: 235 GWDPDNVPAYDSYLITLLKGCDGIYE-TVNSLKRMMERGCNPG-MTFFKLAFEECLTGQN 292
              P N   +++++  L +   G+ E  +  +++M E GC  G +T+  L    C+ G  
Sbjct: 382 NNCPPNEVTFNTFICILCQ--KGLIEQAIMLIEQMSEHGCTVGVVTYNALVNGFCVQGHI 439

Query: 293 LRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYN 352
               E         +  +P+T  Y  +++  C +     A +L+ EM+     P++ T+N
Sbjct: 440 DSALELFRS-----MPCKPNTITYTTLLTGLCNAERLDGAAELVAEMLRGDCPPNVVTFN 494

Query: 353 ILFEFLVKGRKLWEASGLFNEMVKN 377
           +L  F  +   L EA  L  +M+++
Sbjct: 495 VLVSFFCQKGFLEEAIELVEQMMEH 519



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 73/301 (24%), Positives = 116/301 (38%), Gaps = 45/301 (14%)

Query: 121 WDAIKSMKKENVLS-----LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNS 175
           WD  K +  E V +       TF +          ++ AI   + M ++GC   V   N+
Sbjct: 369 WDDAKELLNEMVRNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMSEHGCTVGVVTYNA 428

Query: 176 LLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVG 235
           L++  C  G    A +  R +    KP+  TY  LL G      +  A +   EM+   G
Sbjct: 429 LVNGFCVQGHIDSALELFRSMP--CKPNTITYTTLLTGLCNAERLDGAAELVAEML--RG 484

Query: 236 WDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFE---------- 285
             P NV  ++  L++       + E +  +++MME GC P +  +    +          
Sbjct: 485 DCPPNVVTFN-VLVSFFCQKGFLEEAIELVEQMMEHGCTPNLITYNTLLDGITKDCSSED 543

Query: 286 --ECLTGQNLRGAE---FIWGAMVG-------------------RIGFRPDTHMYNMMIS 321
             E L G   +G       + +++G                    IG RP   +YN ++ 
Sbjct: 544 ALELLHGLVSKGVSPDVITFSSIIGILSKEDRIEEAVQLFHVVQDIGMRPKAVVYNKILL 603

Query: 322 LYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVL 381
             C   E   A+     MV NG  P+  TY IL E L     L EA  L + ++ +  VL
Sbjct: 604 GLCKRCEIDNAIDFFAYMVSNGCMPNESTYIILIEGLAHEGLLKEAQDLLS-VLCSRGVL 662

Query: 382 N 382
           N
Sbjct: 663 N 663



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 76/338 (22%), Positives = 125/338 (36%), Gaps = 43/338 (12%)

Query: 150 RVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAI 209
           R  DA       E  G   DVFA N+L++  CR G  +DA + L +    + PD  TY  
Sbjct: 91  RTSDAARVLRAAEGSGSPVDVFAYNTLVAGYCRYGH-LDAARRL-IGSMPVAPDAYTYTP 148

Query: 210 LLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMM 269
           L+        VA+A     +M +  G  P NV  Y   L  + +   G  + +  L  M 
Sbjct: 149 LIRVLCDRGRVADALSLLDDM-LRRGCQP-NVVTYTVLLEAMCRN-SGFEQAMAVLDEMR 205

Query: 270 ERGCNPGMTFFKLAFEE-CLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNE 328
            +GC P +  + +     C  G+     E +    +   GF+PDT  Y  ++   C S  
Sbjct: 206 AKGCTPNIVTYNVIINGMCREGRVDDARELL--NRLPSYGFQPDTVSYTTLLKGLCASKR 263

Query: 329 TGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRA 388
                +L  EM+     P+  T+++L  F  +G  +  A  +  +M ++    N   C  
Sbjct: 264 WDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLEQMTEHGCATNTTLCNI 323

Query: 389 AVRVYMDS---DDPYV--------------------------------AIKFWKYMIENH 413
            +         DD +                                 A +    M+ N+
Sbjct: 324 VINSICKQGRVDDAFKLLNDMGSYGCNPDTISYTTVLKGLCRAERWDDAKELLNEMVRNN 383

Query: 414 CSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQV 451
           C     T N  +  LC   ++ +A+   + M+E G  V
Sbjct: 384 CPPNEVTFNTFICILCQKGLIEQAIMLIEQMSEHGCTV 421



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 69/348 (19%), Positives = 139/348 (39%), Gaps = 11/348 (3%)

Query: 104 WNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVME 162
           + ++++ + +N  F+     +  M+ +    ++ T+  + +      RV DA    + + 
Sbjct: 181 YTVLLEAMCRNSGFEQAMAVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARELLNRLP 240

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDVA 221
            YG + D  +  +LL  +C   +  D  + F  +++    P+  T+ +L+  + +   V 
Sbjct: 241 SYGFQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVE 300

Query: 222 NAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFK 281
            A +   +M  E G   +      + +I  +     + +    L  M   GCNP    + 
Sbjct: 301 RAIQVLEQMT-EHGCATNTTLC--NIVINSICKQGRVDDAFKLLNDMGSYGCNPDTISYT 357

Query: 282 LAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVY 341
              +     +    A+ +   MV R    P+   +N  I + C       A+ L+++M  
Sbjct: 358 TVLKGLCRAERWDDAKELLNEMV-RNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMSE 416

Query: 342 NGAFPDIQTYNILFE-FLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPY 400
           +G    + TYN L   F V+G  +  A  LF  M    N + +      +    +++   
Sbjct: 417 HGCTVGVVTYNALVNGFCVQGH-IDSALELFRSMPCKPNTITYTTLLTGL---CNAERLD 472

Query: 401 VAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448
            A +    M+   C     T N+LV+  C    L EA++  + M E G
Sbjct: 473 GAAELVAEMLRGDCPPNVVTFNVLVSFFCQKGFLEEAIELVEQMMEHG 520


>gi|255540069|ref|XP_002511099.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550214|gb|EEF51701.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1151

 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 80/327 (24%), Positives = 142/327 (43%), Gaps = 17/327 (5%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           ++  + ++    V   R ++AI    VM+  G   DVF  N+++   C+ GK  +   +L
Sbjct: 476 NIVIYTTIVKGLVKEGRFEEAIKILGVMKDQGLSPDVFCYNTVIIGFCKAGKMEEGKSYL 535

Query: 194 -RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
             ++   +KP+  TY   + G+ +  ++  A+++F EM ++ G  P++V   D  LI   
Sbjct: 536 VEMIAKGLKPNVYTYGAFIHGYCRAGEMQAAERSFIEM-LDSGIAPNDVICTD--LI--- 589

Query: 253 KGCDGIYETVNSLKR------MMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGR 306
              DG  +  N+ K       M+++G  P +    +          L+ A  ++  ++ +
Sbjct: 590 ---DGYCKDGNTTKAFAKFRCMLDQGVLPDVQTHSVLIHGLSKNGKLQEAMGVFSELLDK 646

Query: 307 IGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWE 366
            G  PD   Y  +IS  C   +  AA +L D+M   G  P+I TYN L   L K  ++ +
Sbjct: 647 -GLVPDVFTYTSLISNLCKEGDLKAAFELHDDMCKKGINPNIVTYNALINGLCKLGEIAK 705

Query: 367 ASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVA 426
           A  LF+ + +     N       +  Y  S +   A + +  M        S     L+ 
Sbjct: 706 ARELFDGIPEKGLARNSVTYSTIIAGYCKSANLTEAFQLFHGMKLVGVPPDSFVYCALID 765

Query: 427 GLCDMHMLPEAVKYAKGMAEKGIQVTP 453
           G C      +A+    GM E+GI  TP
Sbjct: 766 GCCKAGNTEKALSLFLGMVEEGIASTP 792



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 83/351 (23%), Positives = 144/351 (41%), Gaps = 14/351 (3%)

Query: 105 NLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQY 164
           +L  DLL  N   +  W   K M    V  + T+ ++ ++Y    +V++       ME+ 
Sbjct: 203 SLSKDLLKGN-RVELFWKVYKGMLGAIVPDVYTYTNLINAYCRVGKVEEGKHVLFDMEEK 261

Query: 165 GCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVANA 223
           GC  ++   + +++ +CR G   +A +  R +  + + PDN  YA L++G+ +++     
Sbjct: 262 GCIPNLVTYSVVIAGLCRAGDVDEALELKRSMANKGLLPDNYIYATLIDGFCRQKRSTEG 321

Query: 224 KKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPG-MTFFKL 282
           K    EM   +G  PD+V AY + +   +K  D I       + M  R       T++ L
Sbjct: 322 KSMLDEMYT-MGLKPDHV-AYTALINGFVKQSD-IGGAFQVKEEMFARKIKLNTFTYYAL 378

Query: 283 AFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYN 342
               C  G +L  AE ++  M   +G +PD   YN +I  Y        A +LL E+   
Sbjct: 379 IHGLCKIG-DLEKAEDLFSEMT-MMGIKPDIQTYNCLIEGYYKVQNMEKAYELLIEIKKE 436

Query: 343 GAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK---NENVLNHENCRAAVRVYMDSDDP 399
               +      +   L     L  A+ LF EM+      N++ +      V+  +     
Sbjct: 437 NLTANAYMCGAIVNGLCHCGDLTRANELFQEMISWGLKPNIVIY---TTIVKGLVKEGRF 493

Query: 400 YVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQ 450
             AIK    M +   S      N ++ G C    + E   Y   M  KG++
Sbjct: 494 EEAIKILGVMKDQGLSPDVFCYNTVIIGFCKAGKMEEGKSYLVEMIAKGLK 544



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 73/330 (22%), Positives = 131/330 (39%), Gaps = 7/330 (2%)

Query: 138 FASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVV 196
           + ++ + +V    +  A    + M     K + F   +L+  +C+ G    A   F  + 
Sbjct: 340 YTALINGFVKQSDIGGAFQVKEEMFARKIKLNTFTYYALIHGLCKIGDLEKAEDLFSEMT 399

Query: 197 DGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAY-DSYLITLLKGC 255
              IKPD  TY  L+EG+ K   V N +K + E++IE+  +     AY    ++  L  C
Sbjct: 400 MMGIKPDIQTYNCLIEGYYK---VQNMEKAY-ELLIEIKKENLTANAYMCGAIVNGLCHC 455

Query: 256 DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHM 315
             +       + M+  G  P +  +    +  +       A  I G M  + G  PD   
Sbjct: 456 GDLTRANELFQEMISWGLKPNIVIYTTIVKGLVKEGRFEEAIKILGVMKDQ-GLSPDVFC 514

Query: 316 YNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
           YN +I  +C + +       L EM+  G  P++ TY        +  ++  A   F EM+
Sbjct: 515 YNTVIIGFCKAGKMEEGKSYLVEMIAKGLKPNVYTYGAFIHGYCRAGEMQAAERSFIEML 574

Query: 376 KNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLP 435
            +    N   C   +  Y    +   A   ++ M++       +T ++L+ GL     L 
Sbjct: 575 DSGIAPNDVICTDLIDGYCKDGNTTKAFAKFRCMLDQGVLPDVQTHSVLIHGLSKNGKLQ 634

Query: 436 EAVKYAKGMAEKGIQVTPFALSKLKQILIK 465
           EA+     + +KG+    F  + L   L K
Sbjct: 635 EAMGVFSELLDKGLVPDVFTYTSLISNLCK 664



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 70/304 (23%), Positives = 127/304 (41%), Gaps = 24/304 (7%)

Query: 116 LFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNS 175
           LFD + +  K + + +V    T++++ + Y  +  + +A   F  M+  G   D F   +
Sbjct: 709 LFDGIPE--KGLARNSV----TYSTIIAGYCKSANLTEAFQLFHGMKLVGVPPDSFVYCA 762

Query: 176 LLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEV 234
           L+   C+ G T  A   FL +V+  I      +  L++G+ K   +  A +   +MV   
Sbjct: 763 LIDGCCKAGNTEKALSLFLGMVEEGI-ASTPAFNALIDGFFKLGKLIEAYQLVEDMV--- 818

Query: 235 GWDPDNVPAYDSYLITLLKGC--DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQN 292
             D    P + +Y I +   C    I E       M +R   P +    L +   L G N
Sbjct: 819 --DNHITPNHVTYTILIEYHCTVGNIKEAEQLFMEMQKRNVMPNV----LTYTSLLHGYN 872

Query: 293 LRGAEF----IWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDI 348
             G       ++  MV R G +PD   +++M+  +        A+KL+D+M+  G     
Sbjct: 873 RIGRRSEMFSLFDEMVAR-GIKPDDLAWSVMVDAHLKEGNWIKALKLVDDMLSEGVNVCK 931

Query: 349 QTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKY 408
             Y IL + L K   L E   + +E+ K  + L+   C   V  +  +     A++  + 
Sbjct: 932 NLYTILIDALCKHNNLSEVLKVLDEVEKQGSKLSLATCGTLVCCFHRAGRTDEALRVLES 991

Query: 409 MIEN 412
           M+ +
Sbjct: 992 MVRS 995



 Score = 45.4 bits (106), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 72/331 (21%), Positives = 117/331 (35%), Gaps = 41/331 (12%)

Query: 174 NSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIE 233
           NSL   + +  +    W+  + + G I PD  TY  L+  + +   V   K    +M  E
Sbjct: 202 NSLSKDLLKGNRVELFWKVYKGMLGAIVPDVYTYTNLINAYCRVGKVEEGKHVLFDME-E 260

Query: 234 VGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEE-CLTGQN 292
            G  P N+  Y   +  L +  D + E +   + M  +G  P    +    +  C   ++
Sbjct: 261 KGCIP-NLVTYSVVIAGLCRAGD-VDEALELKRSMANKGLLPDNYIYATLIDGFCRQKRS 318

Query: 293 LRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMK------------------ 334
             G   +    +  +G +PD   Y  +I+ +   ++ G A +                  
Sbjct: 319 TEGKSML--DEMYTMGLKPDHVAYTALINGFVKQSDIGGAFQVKEEMFARKIKLNTFTYY 376

Query: 335 -----------------LLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKN 377
                            L  EM   G  PDIQTYN L E   K + + +A  L  E+ K 
Sbjct: 377 ALIHGLCKIGDLEKAEDLFSEMTMMGIKPDIQTYNCLIEGYYKVQNMEKAYELLIEIKKE 436

Query: 378 ENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEA 437
               N   C A V       D   A + ++ MI             +V GL       EA
Sbjct: 437 NLTANAYMCGAIVNGLCHCGDLTRANELFQEMISWGLKPNIVIYTTIVKGLVKEGRFEEA 496

Query: 438 VKYAKGMAEKGIQVTPFALSKLKQILIKARK 468
           +K    M ++G+    F  + +     KA K
Sbjct: 497 IKILGVMKDQGLSPDVFCYNTVIIGFCKAGK 527


>gi|224132422|ref|XP_002328265.1| predicted protein [Populus trichocarpa]
 gi|222837780|gb|EEE76145.1| predicted protein [Populus trichocarpa]
          Length = 742

 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 79/316 (25%), Positives = 141/316 (44%), Gaps = 15/316 (4%)

Query: 136 ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR- 194
             + ++ SS+    +  DA    D M + G   DV   N+ +SA+C  GK ++A +  R 
Sbjct: 127 VVYNTLISSFCKEGKTDDAEKLVDEMRKDGLSPDVVTFNARISALCSSGKVLEASRIFRD 186

Query: 195 ----VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLIT 250
                V G  +P+  TY ++L G+ KE  +  A+  F +M  +V  +  N  +Y+ +L+ 
Sbjct: 187 MQIDEVLGLPQPNIITYNLMLGGFCKEGMLEEARALFEKM--KVSENLMNRESYNIWLLG 244

Query: 251 LLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFR 310
           L++    + E    LK M++ G  P +  + +  +       L  A  +   M    G  
Sbjct: 245 LVR-IGKLLEAQLVLKEMVDMGMEPNVYSYNIVMDGLCKNGVLFDARMLMRLMTSS-GVL 302

Query: 311 PDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGL 370
           PDT  Y  ++  YC++ +   A  +L EM+ +G  P+  T NIL   L K  ++ EA  L
Sbjct: 303 PDTVTYTTLLHGYCHTGKVSEANNVLREMMRDGCSPNNYTCNILLYSLWKEGRISEAEEL 362

Query: 371 FNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCD 430
             +M +   V++   C   +    ++     AI+    M  +  + L   GN  + GL D
Sbjct: 363 LQKMNEKGYVIDTVTCNIVIDGLCNNGKLDKAIEIVNGMWTHGSAALGNLGNSYI-GLVD 421

Query: 431 -----MHMLPEAVKYA 441
                   +P+ + Y+
Sbjct: 422 DSDSRKKCMPDLISYS 437



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 65/200 (32%), Positives = 92/200 (46%), Gaps = 14/200 (7%)

Query: 184 GKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPA 243
           GK I  ++ LR       P    Y +LL    KE  V        +MV   G  P+    
Sbjct: 1   GKAISQFKSLRFRFPENPPSIYLYNVLLRSCTKEGRVDCVSWLCKDMVAS-GVSPE---- 55

Query: 244 YDSYLITLLKG--CD-GIYETVNSL-KRMMERGCNPG-MTFFKLAFEECLTGQNLRGAEF 298
             +Y   +L G  CD G  +    L  +M E+GC P   +F  L    C  G   +G E 
Sbjct: 56  --TYTFNVLIGLLCDSGCLDDARELFDKMPEKGCEPNEYSFGILVRGYCRAGFTSKGLEL 113

Query: 299 IWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFL 358
           + G M  R+GF P+  +YN +IS +C   +T  A KL+DEM  +G  PD+ T+N     L
Sbjct: 114 L-GEMR-RLGFSPNKVVYNTLISSFCKEGKTDDAEKLVDEMRKDGLSPDVVTFNARISAL 171

Query: 359 VKGRKLWEASGLFNEMVKNE 378
               K+ EAS +F +M  +E
Sbjct: 172 CSSGKVLEASRIFRDMQIDE 191



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 84/356 (23%), Positives = 148/356 (41%), Gaps = 16/356 (4%)

Query: 102 YAWNLVVDLL-GKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDV 160
           Y +N+++ LL    CL DA     K  +K    +  +F  +   Y  A      +     
Sbjct: 57  YTFNVLIGLLCDSGCLDDARELFDKMPEKGCEPNEYSFGILVRGYCRAGFTSKGLELLGE 116

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV--DGRIKPDNDTYAILLEGWEKER 218
           M + G   +    N+L+S+ C++GKT DA + +  +  DG + PD  T+   +       
Sbjct: 117 MRRLGFSPNKVVYNTLISSFCKEGKTDDAEKLVDEMRKDG-LSPDVVTFNARISALCSSG 175

Query: 219 DVANAKKTFGEMVIE--VGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPG 276
            V  A + F +M I+  +G    N+  Y+  L    K  +G+ E   +L   M+   N  
Sbjct: 176 KVLEASRIFRDMQIDEVLGLPQPNIITYNLMLGGFCK--EGMLEEARALFEKMKVSEN-- 231

Query: 277 MTFFKLAFEECLTG----QNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAA 332
               + ++   L G      L  A+ +   MV  +G  P+ + YN+++   C +     A
Sbjct: 232 -LMNRESYNIWLLGLVRIGKLLEAQLVLKEMV-DMGMEPNVYSYNIVMDGLCKNGVLFDA 289

Query: 333 MKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRV 392
             L+  M  +G  PD  TY  L        K+ EA+ +  EM+++    N+  C   +  
Sbjct: 290 RMLMRLMTSSGVLPDTVTYTTLLHGYCHTGKVSEANNVLREMMRDGCSPNNYTCNILLYS 349

Query: 393 YMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448
                    A +  + M E      + T N+++ GLC+   L +A++   GM   G
Sbjct: 350 LWKEGRISEAEELLQKMNEKGYVIDTVTCNIVIDGLCNNGKLDKAIEIVNGMWTHG 405



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 77/324 (23%), Positives = 131/324 (40%), Gaps = 74/324 (22%)

Query: 102 YAWNLVVDLLGKN-CLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFD 159
           Y++N+V+D L KN  LFDA    ++ M    VL    T+ ++   Y    +V +A     
Sbjct: 271 YSYNIVMDGLCKNGVLFDARM-LMRLMTSSGVLPDTVTYTTLLHGYCHTGKVSEANNVLR 329

Query: 160 VMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR----------------VVDG----- 198
            M + GC  + +  N LL ++ ++G+  +A + L+                V+DG     
Sbjct: 330 EMMRDGCSPNNYTCNILLYSLWKEGRISEAEELLQKMNEKGYVIDTVTCNIVIDGLCNNG 389

Query: 199 --------------------------------------RIKPDNDTYAILLEGWEKERDV 220
                                                 +  PD  +Y+ ++ G  K   V
Sbjct: 390 KLDKAIEIVNGMWTHGSAALGNLGNSYIGLVDDSDSRKKCMPDLISYSTIISGLCKAGRV 449

Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDG-IYETVNSLKRMMERGCNPGMTF 279
             AKK F EM+ +    PD+   YD ++ +  K  +G I      LK M ++GCN  +  
Sbjct: 450 GEAKKKFIEMMGK-NLQPDSA-IYDVFIHSFCK--EGKISSAFRVLKDMEKKGCNKTLQ- 504

Query: 280 FKLAFEECLTGQNLRGAEF-IWGAM--VGRIGFRPDTHMYNMMISLYCYSNETGAAMKLL 336
               +   + G   +   F I+G +  +   G  PD  +YN ++S  C       A  +L
Sbjct: 505 ---TYNSLIMGLGSKNQIFEIYGLIDEMRERGVSPDVSIYNNVLSSLCEGGRVKDAPSVL 561

Query: 337 DEMVYNGAFPDIQTYNILFEFLVK 360
           DEM+  G  P+I +++IL +   K
Sbjct: 562 DEMLQKGISPNISSFSILIKAFCK 585


>gi|255562047|ref|XP_002522032.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538836|gb|EEF40436.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 451

 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 80/330 (24%), Positives = 138/330 (41%), Gaps = 51/330 (15%)

Query: 55  EDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWS-AYQLNDKHSPYA--WNLVVDLL 111
           E  L+K    V+ E V +VL+     P  +++FF WS AY     ++P +  +  ++ +L
Sbjct: 58  ERTLNKLNAPVTSELVFRVLRACSRSPTESLRFFNWSRAY-----YTPTSIEYEELIKIL 112

Query: 112 GKNCLFDAMWDAIKSMKKEN---VLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKH 168
            K+  + +MW  I  MK +N    +S  T  S+   Y  +  +  A+  F+      C+ 
Sbjct: 113 AKSKRYSSMWKLITQMKDQNPQFSISSETVRSIIEEYGRSGLIDQAVEVFNQCNSLNCEQ 172

Query: 169 DVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTF 227
           +V   NSLL A+C       A+  + R++   + P+  TY++L+ GW      +N K   
Sbjct: 173 NVDIYNSLLFALCEVKLFHGAYALVRRLIRKGLAPNKTTYSVLVNGW-----CSNGKFKE 227

Query: 228 GEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEEC 287
            ++ +E                                  M ++G NP +    L  E  
Sbjct: 228 AQLFLE---------------------------------EMSKKGFNPPVRGRDLLIEGL 254

Query: 288 LTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPD 347
           L       A+ +   M  + GF PD + +N +I   C S E    + +   +   G  PD
Sbjct: 255 LNAGYFESAKEMVFKM-SKEGFVPDVNTFNCLIEAICNSGEVDFCVDMYYSLRKLGFCPD 313

Query: 348 IQTYNILFEFLVKGRKLWEASGLFNEMVKN 377
           I +Y IL   + K  K+ EA  L N  +++
Sbjct: 314 INSYKILIPAVSKVGKIDEAFKLLNNSIED 343


>gi|302785562|ref|XP_002974552.1| hypothetical protein SELMODRAFT_101881 [Selaginella moellendorffii]
 gi|300157447|gb|EFJ24072.1| hypothetical protein SELMODRAFT_101881 [Selaginella moellendorffii]
          Length = 495

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 72/282 (25%), Positives = 127/282 (45%), Gaps = 15/282 (5%)

Query: 100 SPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFD 159
           + +  N++V  L KN   DA ++  K +  E  L   ++  +      AD++  A+  F 
Sbjct: 106 TTFIVNMLVSCLCKNGKVDAAYELYKRLSDECSLDRISYNMLTYGLCKADQIDRALAVFG 165

Query: 160 VMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGR----IKPDNDTYAILLEGW 214
            ME+      +   N LL   CR G+   A   L  +++G+    + PD  +Y  ++ G+
Sbjct: 166 EMEENAVVPSLLTYNGLLYGYCRAGRMEQAMTLLEEMIEGKKGSDVVPDMYSYNTVISGF 225

Query: 215 EKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC--DGIYETVNSL-KRMMER 271
            K R +  A+     M I+ G  P NV  ++    TLL G    G  +  N++ + M+ER
Sbjct: 226 CKARQLPTARYVLRRM-IKSGCSP-NVVTFN----TLLDGLCLTGKLDEANAMFEYMVER 279

Query: 272 GCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGA 331
            C P    + +          +  A   +  M+ R G  P+ + Y  +I   C +N+   
Sbjct: 280 NCEPTAVTYTVLITGHARALRIDKANDYFVDMLRR-GVEPNVYTYTALIGGLCDANKVED 338

Query: 332 AMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNE 373
           A+++L  M   G  P++ TY  +   L KG ++  A+ LFN+
Sbjct: 339 ALEILKRMSSTGREPNVVTYTRVIGALCKGGQIERATKLFND 380



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 90/383 (23%), Positives = 161/383 (42%), Gaps = 64/383 (16%)

Query: 81  PGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNC-------LFDAMWDAIKSMKKENVL 133
           P  A + F+W+A Q + +H+ + +N  ++ L K         +FD M      + KE + 
Sbjct: 17  PKLASRVFKWAARQEDFQHTVFTYNAYLNALVKGGHGSKARKIFDDM------LYKECLP 70

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           ++ T+  V        +   A+     ME        F +N L+S +C++GK   A++  
Sbjct: 71  NIYTYGIVLRGLCDDAKTDAALELLQDMESKMLTPTTFIVNMLVSCLCKNGKVDAAYELY 130

Query: 194 RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLK 253
           + +      D  +Y +L  G  K   +  A   FGEM      +   VP+  +Y      
Sbjct: 131 KRLSDECSLDRISYNMLTYGLCKADQIDRALAVFGEM-----EENAVVPSLLTY------ 179

Query: 254 GCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDT 313
             +G+        RM +      MT      EE + G+  +G++ +           PD 
Sbjct: 180 --NGLLYGYCRAGRMEQ-----AMTL----LEEMIEGK--KGSDVV-----------PDM 215

Query: 314 HMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNE 373
           + YN +IS +C + +   A  +L  M+ +G  P++ T+N L + L    KL EA+ +F  
Sbjct: 216 YSYNTVISGFCKARQLPTARYVLRRMIKSGCSPNVVTFNTLLDGLCLTGKLDEANAMFEY 275

Query: 374 MVKNE--------NVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLV 425
           MV+           VL   + R A+R+   +D       ++  M+         T   L+
Sbjct: 276 MVERNCEPTAVTYTVLITGHAR-ALRIDKAND-------YFVDMLRRGVEPNVYTYTALI 327

Query: 426 AGLCDMHMLPEAVKYAKGMAEKG 448
            GLCD + + +A++  K M+  G
Sbjct: 328 GGLCDANKVEDALEILKRMSSTG 350


>gi|15237375|ref|NP_199422.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171880|sp|Q9FNL2.1|PP418_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g46100
 gi|9757730|dbj|BAB08255.1| salt-inducible protein-like [Arabidopsis thaliana]
 gi|332007954|gb|AED95337.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 472

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 87/326 (26%), Positives = 136/326 (41%), Gaps = 18/326 (5%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-- 191
           S   + +V +  V  +++  A   +  M + G    V +LN L+ A+CR+  T+DA    
Sbjct: 120 SQKAYVTVLAILVEENQLNLAFKFYKNMREIGLPPTVASLNVLIKALCRNDGTVDAGLKI 179

Query: 192 FLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSY--LI 249
           FL +      PD+ TY  L+ G  +   +  AKK F EMV     + D  P   +Y  LI
Sbjct: 180 FLEMPKRGCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMV-----EKDCAPTVVTYTSLI 234

Query: 250 TLLKGCDGIYETVNSLKRMMERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIG 308
             L G   + E +  L+ M  +G  P + T+  L    C  G++L+  E ++  M+ R G
Sbjct: 235 NGLCGSKNVDEAMRYLEEMKSKGIEPNVFTYSSLMDGLCKDGRSLQAME-LFEMMMAR-G 292

Query: 309 FRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEAS 368
            RP+   Y  +I+  C   +   A++LLD M   G  PD   Y  +        K  EA+
Sbjct: 293 CRPNMVTYTTLITGLCKEQKIQEAVELLDRMNLQGLKPDAGLYGKVISGFCAISKFREAA 352

Query: 369 GLFNEMVKNENVLN------HENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGN 422
              +EM+      N      H      V   + ++ P  A   +  M     S   ET  
Sbjct: 353 NFLDEMILGGITPNRLTWNIHVKTSNEVVRGLCANYPSRAFTLYLSMRSRGISVEVETLE 412

Query: 423 LLVAGLCDMHMLPEAVKYAKGMAEKG 448
            LV  LC      +AV+    +   G
Sbjct: 413 SLVKCLCKKGEFQKAVQLVDEIVTDG 438



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 79/356 (22%), Positives = 148/356 (41%), Gaps = 48/356 (13%)

Query: 26  FASHLDVPNLPPTIKTLCEIIANTPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAV 85
           F  ++    LPPT+ +L             +VL K L R +  TV+  LK     P    
Sbjct: 143 FYKNMREIGLPPTVASL-------------NVLIKALCR-NDGTVDAGLKIFLEMPKRGC 188

Query: 86  KFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIK----SMKKENVLSLATFASV 141
                      D  S Y +  ++  L   C F  + +A K     ++K+   ++ T+ S+
Sbjct: 189 -----------DPDS-YTYGTLISGL---CRFGRIDEAKKLFTEMVEKDCAPTVVTYTSL 233

Query: 142 FSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-I 200
            +    +  V +A+   + M+  G + +VF  +SL+  +C+DG+++ A +   ++  R  
Sbjct: 234 INGLCGSKNVDEAMRYLEEMKSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGC 293

Query: 201 KPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYE 260
           +P+  TY  L+ G  KE+ +  A +    M ++ G  PD        +I+         E
Sbjct: 294 RPNMVTYTTLITGLCKEQKIQEAVELLDRMNLQ-GLKPD--AGLYGKVISGFCAISKFRE 350

Query: 261 TVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRG--------AEFIWGAMVGRIGFRPD 312
             N L  M+  G  P    + +  +   + + +RG        A  ++ +M  R G   +
Sbjct: 351 AANFLDEMILGGITPNRLTWNIHVKT--SNEVVRGLCANYPSRAFTLYLSMRSR-GISVE 407

Query: 313 THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEAS 368
                 ++   C   E   A++L+DE+V +G  P   T+ +L    +    + EAS
Sbjct: 408 VETLESLVKCLCKKGEFQKAVQLVDEIVTDGCIPSKGTWKLLIGHTLDKTIVGEAS 463



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 57/243 (23%), Positives = 93/243 (38%), Gaps = 40/243 (16%)

Query: 239 DNVPAYDSYLITLLKGCDGIYETVNSLK---RMMERGCNPGMTFFKLAFEECLTGQNLRG 295
           +N    +  L+++ +G   ++   +SL+   +M +  C+P    + +     L  +N   
Sbjct: 80  ENCVVSEDILLSICRGYGRVHRPFDSLRVFHKMKDFDCDPSQKAY-VTVLAILVEENQLN 138

Query: 296 AEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNET-GAAMKLLDEMVYNGAFPDIQTYNIL 354
             F +   +  IG  P     N++I   C ++ T  A +K+  EM   G  PD  TY  L
Sbjct: 139 LAFKFYKNMREIGLPPTVASLNVLIKALCRNDGTVDAGLKIFLEMPKRGCDPDSYTYGTL 198

Query: 355 FEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHC 414
              L +  ++ EA  LF EMV                                   E  C
Sbjct: 199 ISGLCRFGRIDEAKKLFTEMV-----------------------------------EKDC 223

Query: 415 SDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEE 474
           +    T   L+ GLC    + EA++Y + M  KGI+   F  S L   L K  +     E
Sbjct: 224 APTVVTYTSLINGLCGSKNVDEAMRYLEEMKSKGIEPNVFTYSSLMDGLCKDGRSLQAME 283

Query: 475 LLK 477
           L +
Sbjct: 284 LFE 286



 Score = 45.8 bits (107), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 63/144 (43%), Gaps = 2/144 (1%)

Query: 308 GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEA 367
           G  PD++ Y  +IS  C       A KL  EMV     P + TY  L   L   + + EA
Sbjct: 187 GCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGSKNVDEA 246

Query: 368 SGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYV-AIKFWKYMIENHCSDLSETGNLLVA 426
                EM K++ +  +    +++   +  D   + A++ ++ M+   C     T   L+ 
Sbjct: 247 MRYLEEM-KSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLIT 305

Query: 427 GLCDMHMLPEAVKYAKGMAEKGIQ 450
           GLC    + EAV+    M  +G++
Sbjct: 306 GLCKEQKIQEAVELLDRMNLQGLK 329


>gi|334183592|ref|NP_001185295.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75179660|sp|Q9LQ15.1|PPR95_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62914, mitochondrial; Flags: Precursor
 gi|8493579|gb|AAF75802.1|AC011000_5 Contains a RepB PF|01051 protein domain and multiple PPR PF|01535
           repeats. EST gb|AA728420 comes from this gene
           [Arabidopsis thaliana]
 gi|332195900|gb|AEE34021.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 528

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 75/304 (24%), Positives = 136/304 (44%), Gaps = 5/304 (1%)

Query: 136 ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRV 195
            TF ++     + ++  +A+   D M Q GC+ D+    ++++ +C+ G T  A   L  
Sbjct: 184 VTFTTLIHGLFLHNKASEAVALIDRMVQRGCQPDLVTYGAVVNGLCKRGDTDLALNLLNK 243

Query: 196 VDG-RIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG 254
           ++  +I+ +   Y+ +++   K R   +A   F EM  + G  P NV  Y S LI+ L  
Sbjct: 244 MEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENK-GVRP-NVITYSS-LISCLCN 300

Query: 255 CDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTH 314
                +    L  M+ER  NP +  F    +  +    L  AE ++  M+ R    P+  
Sbjct: 301 YGRWSDASRLLSDMIERKINPNLVTFSALIDAFVKKGKLVKAEKLYEEMIKR-SIDPNIF 359

Query: 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
            Y+ +I+ +C  +  G A ++L+ M+     P++ TYN L     K +++ +   LF EM
Sbjct: 360 TYSSLINGFCMLDRLGEAKQMLELMIRKDCLPNVVTYNTLINGFCKAKRVDKGMELFREM 419

Query: 375 VKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHML 434
            +   V N       +  +  + D   A   +K M+         T N+L+ GLC    L
Sbjct: 420 SQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKL 479

Query: 435 PEAV 438
            +A+
Sbjct: 480 AKAM 483



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 73/305 (23%), Positives = 131/305 (42%), Gaps = 40/305 (13%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASVFSSYVVADRVKDAITTFDVM 161
            +  VV+ L K    D   + +  M+   +  ++  +++V  S        DA+  F  M
Sbjct: 220 TYGAVVNGLCKRGDTDLALNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEM 279

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYAILLEGWEKERDV 220
           E  G + +V   +SL+S +C  G+  DA + L  +++ +I P+  T++ L++ + K+  +
Sbjct: 280 ENKGVRPNVITYSSLISCLCNYGRWSDASRLLSDMIERKINPNLVTFSALIDAFVKKGKL 339

Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNP----- 275
             A+K + EM I+   DP N+  Y S LI      D + E    L+ M+ + C P     
Sbjct: 340 VKAEKLYEEM-IKRSIDP-NIFTYSS-LINGFCMLDRLGEAKQMLELMIRKDCLPNVVTY 396

Query: 276 ---------------GMTFFKLAFEECLTGQNLRGAEFIWGAMVGR-------------- 306
                          GM  F+   +  L G  +     I G    R              
Sbjct: 397 NTLINGFCKAKRVDKGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVS 456

Query: 307 IGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWE 366
           +G  P+   YN+++   C + +   AM + + +  +   PDI TYNI+ E + K  K W+
Sbjct: 457 VGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGK-WK 515

Query: 367 ASGLF 371
             G++
Sbjct: 516 MGGIY 520



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 75/319 (23%), Positives = 136/319 (42%), Gaps = 13/319 (4%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           S+  F+ + S+    ++    I+  + ME  G  H+++  N L++  CR  +   A   L
Sbjct: 77  SIIEFSKLLSAIAKMNKFDLVISFGEKMEILGISHNLYTYNILINCFCRCSRLSLALALL 136

Query: 194 -RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
            +++    +PD  T   LL G+     +++A     +MV E+G+ PD V        TL+
Sbjct: 137 GKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVALVDQMV-EMGYKPDTVT-----FTTLI 190

Query: 253 KGC---DGIYETVNSLKRMMERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIG 308
            G    +   E V  + RM++RGC P + T+  +    C  G        +      +I 
Sbjct: 191 HGLFLHNKASEAVALIDRMVQRGCQPDLVTYGAVVNGLCKRGDTDLALNLLNKMEAAKI- 249

Query: 309 FRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEAS 368
              +  +Y+ +I   C       A+ L  EM   G  P++ TY+ L   L    +  +AS
Sbjct: 250 -EANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYGRWSDAS 308

Query: 369 GLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGL 428
            L ++M++ +   N     A +  ++       A K ++ MI+        T + L+ G 
Sbjct: 309 RLLSDMIERKINPNLVTFSALIDAFVKKGKLVKAEKLYEEMIKRSIDPNIFTYSSLINGF 368

Query: 429 CDMHMLPEAVKYAKGMAEK 447
           C +  L EA +  + M  K
Sbjct: 369 CMLDRLGEAKQMLELMIRK 387



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 83/388 (21%), Positives = 142/388 (36%), Gaps = 79/388 (20%)

Query: 153 DAITTFDVMEQ-----------------------------------YGCKHDVFALNSLL 177
           DAI  F VM Q                                    G  H+++  N L+
Sbjct: 61  DAIGLFGVMAQSRPFPSIIEFSKLLSAIAKMNKFDLVISFGEKMEILGISHNLYTYNILI 120

Query: 178 SAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGW 236
           +  CR  +   A   L +++    +PD  T   LL G+     +++A     +MV E+G+
Sbjct: 121 NCFCRCSRLSLALALLGKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVALVDQMV-EMGY 179

Query: 237 DPDNVPAYDSYLITLLKGC---DGIYETVNSLKRMMERGCNP---------------GMT 278
            PD V        TL+ G    +   E V  + RM++RGC P               G T
Sbjct: 180 KPDTVT-----FTTLIHGLFLHNKASEAVALIDRMVQRGCQPDLVTYGAVVNGLCKRGDT 234

Query: 279 FFKLAFEECLTGQNLRGAEFIWGAMVGRI-------------------GFRPDTHMYNMM 319
              L     +    +     I+  ++  +                   G RP+   Y+ +
Sbjct: 235 DLALNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSL 294

Query: 320 ISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNEN 379
           IS  C       A +LL +M+     P++ T++ L +  VK  KL +A  L+ EM+K   
Sbjct: 295 ISCLCNYGRWSDASRLLSDMIERKINPNLVTFSALIDAFVKKGKLVKAEKLYEEMIKRSI 354

Query: 380 VLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVK 439
             N     + +  +   D    A +  + MI   C     T N L+ G C    + + ++
Sbjct: 355 DPNIFTYSSLINGFCMLDRLGEAKQMLELMIRKDCLPNVVTYNTLINGFCKAKRVDKGME 414

Query: 440 YAKGMAEKGIQVTPFALSKLKQILIKAR 467
             + M+++G+       + L     +AR
Sbjct: 415 LFREMSQRGLVGNTVTYTTLIHGFFQAR 442


>gi|357502007|ref|XP_003621292.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|124360248|gb|ABN08261.1| Pentatricopeptide repeat [Medicago truncatula]
 gi|355496307|gb|AES77510.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 738

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 77/281 (27%), Positives = 126/281 (44%), Gaps = 14/281 (4%)

Query: 103 AWNLVVDLLGKNCLFD---AMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFD 159
           A+N++ D L K    D    M D +KSM+ +  + +  + ++ + Y +  +  +A + F 
Sbjct: 402 AYNILFDALCKLGKVDDAVGMLDELKSMQLD--VDMKHYTTLINGYFLQGKPIEAQSLFK 459

Query: 160 VMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKER 218
            ME+ G K DV A N L +   R+    +A   L  ++ + ++P++ T+ I++EG     
Sbjct: 460 EMEERGFKPDVVAYNVLAAGFFRNRTDFEAMDLLNYMESQGVEPNSTTHKIIIEGLCSAG 519

Query: 219 DVANAKKTF----GEMV-IEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGC 273
            V  A++ F    GE V I V      V  Y      L++    + E    L+ M+E   
Sbjct: 520 KVEEAEEFFNWLKGESVEISVEIYTALVNGYCE--AALIEKSHELKEAFILLRTMLEMNM 577

Query: 274 NPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAM 333
            P    +   F       N+ GA  ++   +   GF PD   Y +MI+ YC +N    A 
Sbjct: 578 KPSKVMYSKIFTALCCNGNMEGAHTLFNLFI-HTGFTPDAVTYTIMINGYCKTNCLPEAH 636

Query: 334 KLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
           +L  +M   G  PD  TY I+     K   L EA  LF +M
Sbjct: 637 ELFKDMKERGITPDAVTYTIMINGYCKMNCLREAHELFKDM 677



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 80/342 (23%), Positives = 135/342 (39%), Gaps = 12/342 (3%)

Query: 117 FDAMWDAIKSMKKENV-LSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNS 175
           FD      KSM    +  +   F+ +        R  + +  F+  ++ G   D  A N 
Sbjct: 346 FDKALAVYKSMISRGIKTNCVIFSCILHCLDEMGRALEVVDMFEEFKESGLFIDRKAYNI 405

Query: 176 LLSAICRDGKTIDAWQFLRVVDG-RIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEV 234
           L  A+C+ GK  DA   L  +   ++  D   Y  L+ G+  +     A+  F EM  E 
Sbjct: 406 LFDALCKLGKVDDAVGMLDELKSMQLDVDMKHYTTLINGYFLQGKPIEAQSLFKEME-ER 464

Query: 235 GWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLR 294
           G+ PD V AY+       +     +E ++ L  M  +G  P  T  K+  E   +   + 
Sbjct: 465 GFKPD-VVAYNVLAAGFFRNRTD-FEAMDLLNYMESQGVEPNSTTHKIIIEGLCSAGKVE 522

Query: 295 GAEFIWGAMVGRIGFRPDTHMYNMMISLYC------YSNETGAAMKLLDEMVYNGAFPDI 348
            AE  +  + G         +Y  +++ YC       S+E   A  LL  M+     P  
Sbjct: 523 EAEEFFNWLKGE-SVEISVEIYTALVNGYCEAALIEKSHELKEAFILLRTMLEMNMKPSK 581

Query: 349 QTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKY 408
             Y+ +F  L     +  A  LFN  +      +       +  Y  ++    A + +K 
Sbjct: 582 VMYSKIFTALCCNGNMEGAHTLFNLFIHTGFTPDAVTYTIMINGYCKTNCLPEAHELFKD 641

Query: 409 MIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQ 450
           M E   +  + T  +++ G C M+ L EA +  K M E+GI+
Sbjct: 642 MKERGITPDAVTYTIMINGYCKMNCLREAHELFKDMKERGIK 683



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 79/369 (21%), Positives = 157/369 (42%), Gaps = 26/369 (7%)

Query: 95  LNDKHSPY-AWNLVVDLLGKNCLFDAMWDAIKSMKKENVL--SLATFASVFSSYVVADRV 151
           +N+ H  + A+N  V       +F    D +   +K  V+  ++ +F  + +  V  D V
Sbjct: 147 VNEDHYLFNAFNGFVKACVSQNMFVEAIDFLLQTRKNVVILPNILSFNFLINRLVKHDEV 206

Query: 152 KDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVD----GRIKPDNDTY 207
             A+  F   + +G   + +    ++ A+C+ G   D    +RV D      +  D+  Y
Sbjct: 207 DMALCLFVRFKSFGLIFNEYTYTIVIKALCKKG---DWENVVRVFDEMKEAGVDDDSYCY 263

Query: 208 AILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG-CD--GIYETVNS 264
           A  +EG  K     N +   G  V++  +   N   +      +++G C+   + E  + 
Sbjct: 264 ATFIEGLCK-----NNRSDLGYAVLQ-DYRTRNAHVHKYAYTAVIRGFCNETKLDEAESV 317

Query: 265 LKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYC 324
              M ++G  P +  +          +N   A  ++ +M+ R G + +  +++ +  L+C
Sbjct: 318 FLEMEKQGLVPDVYVYCALVHGYCNSRNFDKALAVYKSMISR-GIKTNCVIFSCI--LHC 374

Query: 325 YSNETGAAMKLLD---EMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVL 381
             +E G A++++D   E   +G F D + YNILF+ L K  K+ +A G+ +E+   +  +
Sbjct: 375 L-DEMGRALEVVDMFEEFKESGLFIDRKAYNILFDALCKLGKVDDAVGMLDELKSMQLDV 433

Query: 382 NHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYA 441
           + ++    +  Y     P  A   +K M E          N+L AG        EA+   
Sbjct: 434 DMKHYTTLINGYFLQGKPIEAQSLFKEMEERGFKPDVVAYNVLAAGFFRNRTDFEAMDLL 493

Query: 442 KGMAEKGIQ 450
             M  +G++
Sbjct: 494 NYMESQGVE 502


>gi|22128712|gb|AAM92824.1| putative chloroplast RNA processing protein [Oryza sativa Japonica
           Group]
          Length = 878

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 99/410 (24%), Positives = 167/410 (40%), Gaps = 24/410 (5%)

Query: 81  PGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCL-------FDAMWDAIKSMKKENVL 133
           P  AV  +   A     K +P      + L+G  C        F A+ + +K   + + +
Sbjct: 70  PAAAVSRYNRMARAGAGKVTPTVHTYAI-LIGCCCRAGRLDLGFAALGNVVKKGFRVDAI 128

Query: 134 SLATFASVFSSYVVADRVKDAI-TTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQF 192
              TF  +        R  DA+      M + GC  DVF+ N+LL  +C + ++ +A + 
Sbjct: 129 ---TFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALEL 185

Query: 193 LRVV----DGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYL 248
           L ++     G   PD  +Y  +L G+ KE D   A  T+ EM ++ G  PD V  Y S +
Sbjct: 186 LHMMADDRGGGSPPDVVSYNTVLNGFFKEGDSDKAYSTYHEM-LDRGILPD-VVTYSSII 243

Query: 249 ITLLKGCDGIYETVNSLKRMMERGCNPG-MTFFKLAFEECLTGQNLRGAEFIWGAMVGRI 307
             L K    + + +  L  M++ G  P  MT+  +    C +GQ     E I      R 
Sbjct: 244 AALCKA-QAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQP---KEAIGTLKKMRS 299

Query: 308 -GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWE 366
            G  P+   Y+ +++  C +  +  A K+ D M   G  PDI TY  L +       L E
Sbjct: 300 DGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVE 359

Query: 367 ASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVA 426
              L + MV+N    +H      +  Y   +    A+  +  M ++  +        ++ 
Sbjct: 360 MHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVID 419

Query: 427 GLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELL 476
            LC    + +A+ Y + M ++G+       + L   L    K    EEL+
Sbjct: 420 VLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELI 469



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 97/443 (21%), Positives = 175/443 (39%), Gaps = 88/443 (19%)

Query: 104 WNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVME 162
           ++ ++  L K    D   + + +M K  V+    T+ S+   Y  + + K+AI T   M 
Sbjct: 239 YSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMR 298

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR----------------------- 199
             G + +V   +SL++ +C++G++ +A +    +  R                       
Sbjct: 299 SDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALV 358

Query: 200 -------------IKPDNDTYAILLEGWEKERDVANAKKTFGEM---------------- 230
                        I+PD+  + IL+  + K+  V  A   F +M                
Sbjct: 359 EMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVI 418

Query: 231 ------------------VIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERG 272
                             +I+ G  P N+  Y S LI  L  CD   +    +  M++RG
Sbjct: 419 DVLCKSGSVDDAMLYFEQMIDEGLTP-NIIVYTS-LIHGLCTCDKWDKAEELILEMLDRG 476

Query: 273 CNPGMTFFKLAFEE-CLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGA 331
                 FF    +  C  G+ +  +E ++  MV RIG +PD   YN +I   C + +   
Sbjct: 477 ICLNTIFFNSIIDSHCKEGRVIE-SEKLFDLMV-RIGVKPDIITYNTLIDGCCLAGKMDE 534

Query: 332 AMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK---NENVLNHENCRA 388
           A KLL  MV  G  PDI TY  L     +  ++ +A  LF EMV    + N++ +     
Sbjct: 535 ATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQ 594

Query: 389 AV---RVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMA 445
            +   R    + + YV+I      +E        T N+++ GLC  ++  EA++  + + 
Sbjct: 595 GLFHTRRTAAAKELYVSITKSGTQLE------LSTYNIILHGLCKNNLTDEALRMFQNLC 648

Query: 446 EKGIQVTPFALSKLKQILIKARK 468
              +Q+     + +   L+K  +
Sbjct: 649 LTDLQLETRTFNIMIGALLKCGR 671



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 71/295 (24%), Positives = 121/295 (41%), Gaps = 17/295 (5%)

Query: 138 FASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVV 196
           F S+  S+    RV ++   FD+M + G K D+   N+L+   C  GK  +A + L  +V
Sbjct: 484 FNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMV 543

Query: 197 DGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD 256
              +KPD  TY  L+ G+ +   + +A   F EMV   G  P N+  Y+  L        
Sbjct: 544 SVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMV-SSGVSP-NIITYNIIL-------Q 594

Query: 257 GIYETVNSLK------RMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFR 310
           G++ T  +         + + G    ++ + +     L   NL          +     +
Sbjct: 595 GLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHG-LCKNNLTDEALRMFQNLCLTDLQ 653

Query: 311 PDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGL 370
            +T  +N+MI           A  L      NG  PD++TY+++ E L++   L E   L
Sbjct: 654 LETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLVPDVRTYSLMAENLIEQGSLEELDDL 713

Query: 371 FNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLV 425
           F  M +N    +     + VR  +   D   A  +   + E H S  + T + L+
Sbjct: 714 FLSMEENGCSADSRMLNSIVRKLLQRGDITRAGTYLFMIDEKHFSLEASTASFLL 768



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 74/308 (24%), Positives = 127/308 (41%), Gaps = 15/308 (4%)

Query: 152 KDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVD---GRIKPDNDTYA 208
           +DA   FD + + G    ++ LN  L+ + R        ++ R+     G++ P   TYA
Sbjct: 37  EDARHVFDELLRRGRGASIYGLNRALADVARHSPAAAVSRYNRMARAGAGKVTPTVHTYA 96

Query: 209 ILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNS---- 264
           IL+    +   +       G  V++ G+  D +         LLKG      T ++    
Sbjct: 97  ILIGCCCRAGRLDLGFAALGN-VVKKGFRVDAIT-----FTPLLKGLCADKRTSDAMDIV 150

Query: 265 LKRMMERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRP-DTHMYNMMISL 322
           L+RM E GC P + ++  L    C   ++    E +      R G  P D   YN +++ 
Sbjct: 151 LRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNG 210

Query: 323 YCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLN 382
           +    ++  A     EM+  G  PD+ TY+ +   L K + + +A  + N MVKN  + +
Sbjct: 211 FFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPD 270

Query: 383 HENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAK 442
                + +  Y  S  P  AI   K M  +       T + L+  LC      EA K   
Sbjct: 271 CMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFD 330

Query: 443 GMAEKGIQ 450
            M ++G++
Sbjct: 331 SMTKRGLE 338


>gi|225451899|ref|XP_002279045.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g38730-like [Vitis vinifera]
          Length = 590

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 91/384 (23%), Positives = 166/384 (43%), Gaps = 31/384 (8%)

Query: 87  FFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLS------------ 134
           FF+W    LN KHS  +   ++  L K+  F    + ++ +   + LS            
Sbjct: 61  FFKWVESNLNHKHSLQSSWTMIHTLAKHKQFKTAQNLLERIAVRDYLSSPSVLNAVVRIH 120

Query: 135 --------LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKT 186
                   + ++  +F  Y  +   +DAI  F+ M  +G K  + A   LL+++ +   T
Sbjct: 121 DDPDSNSQILSWLVIF--YANSRMTQDAIQVFEHMRVHGFKPHLHACTVLLNSLAKARLT 178

Query: 187 IDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYD 245
              W+ + ++V   + P+   + +L+    K  DV  A++   EM  E  +   ++  Y+
Sbjct: 179 NMVWKVYKKMVRVGVVPNIHIFNVLIHACCKSGDVEKAEQLLNEM--ESRFIFPDLFTYN 236

Query: 246 SYLITLLKGCDGIYETVNSLKRMMERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMV 304
           + LI+L       YE +    RM   G +P + T+  L +  C  G+ +R A  ++  + 
Sbjct: 237 T-LISLYCKKGMHYEALGIQDRMERGGVSPDIVTYNSLIYGFCREGR-MREALRLFREIN 294

Query: 305 GRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKL 364
           G     P+   Y  +I  YC  N+   A++L + M   G  P + TYN +   L +  K+
Sbjct: 295 GAT---PNHVTYTTLIDGYCRVNDLEEALRLREVMEVEGLHPGVVTYNSILRKLCEEGKI 351

Query: 365 WEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLL 424
            +A+ L NEM + +   ++  C   +  Y    D   A+K  K M+E        T   L
Sbjct: 352 KDANRLLNEMSERKVEPDNVTCNTLINAYCKIGDMGSAMKVKKKMLEAGLKPDQFTFKAL 411

Query: 425 VAGLCDMHMLPEAVKYAKGMAEKG 448
           + G C +H +  A ++   M + G
Sbjct: 412 IHGFCKLHEVDSAKEFLFEMLDAG 435



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 71/275 (25%), Positives = 114/275 (41%), Gaps = 40/275 (14%)

Query: 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR 194
           L T+ ++ S Y       +A+   D ME+ G   D+   NSL+   CR+G+  +A +  R
Sbjct: 232 LFTYNTLISLYCKKGMHYEALGIQDRMERGGVSPDIVTYNSLIYGFCREGRMREALRLFR 291

Query: 195 VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITL--- 251
            ++G   P++ TY  L++G+ +  D+  A +    M +E G  P  V  Y+S L  L   
Sbjct: 292 EING-ATPNHVTYTTLIDGYCRVNDLEEALRLREVMEVE-GLHP-GVVTYNSILRKLCEE 348

Query: 252 --LKGCDGIYE------------TVNSL-----------------KRMMERGCNPG-MTF 279
             +K  + +              T N+L                 K+M+E G  P   TF
Sbjct: 349 GKIKDANRLLNEMSERKVEPDNVTCNTLINAYCKIGDMGSAMKVKKKMLEAGLKPDQFTF 408

Query: 280 FKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEM 339
             L    C   +     EF++  +    GF P    Y+ ++  Y   +   A ++L DE+
Sbjct: 409 KALIHGFCKLHEVDSAKEFLFEMLDA--GFSPSYSTYSWLVDSYYDQDNKEAVIRLPDEL 466

Query: 340 VYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
              G F DI  Y  L   L K  K+  A  +F  M
Sbjct: 467 SRKGLFVDISVYRALIRRLCKIDKIESAERIFTLM 501


>gi|449462479|ref|XP_004148968.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 580

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 86/355 (24%), Positives = 147/355 (41%), Gaps = 42/355 (11%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           ++ T+ ++     +  R+ +A   F  M++ GC  DV    +L+  +C  G    A +  
Sbjct: 138 NIVTYNTLIKGLCMEHRISEATRLFLRMQKLGCTPDVVTYGTLIKGLCGTGNINIALKLH 197

Query: 194 RVVDGRI-------KPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDS 246
           + +   I       KP+  TY I+++G  K      AK+ F EM  + G  P+       
Sbjct: 198 QEMLNDISRYEINCKPNVITYNIIVDGLCKVGREDEAKQLFEEMKTQ-GMIPN------- 249

Query: 247 YLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGR 306
                                M+++G  P M  F +  +       +  A+ + G M+  
Sbjct: 250 --------------------EMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMI-E 288

Query: 307 IGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWE 366
            G  PD   YN +I  +C   +  +A +L   M   G  PD+ +YN+L     K  K+ E
Sbjct: 289 SGIVPDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEE 348

Query: 367 ASGLFNEMV---KNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNL 423
           A  L+NEM+   K  NV+ +++    + +    DD   A K +  M  +  ++ S T  +
Sbjct: 349 AMKLYNEMLLVGKRPNVITYDSLLKGIFLAGKVDD---AKKLFSVMKAHGIAENSYTYGI 405

Query: 424 LVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKK 478
            + GLC    L EA+K    +     ++    L+ L   L KA K     EL +K
Sbjct: 406 FLDGLCKNDCLFEAMKLFTELKSSNFKLEIENLNCLIDGLCKAGKLETAWELFEK 460



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 96/396 (24%), Positives = 163/396 (41%), Gaps = 50/396 (12%)

Query: 91  SAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADR 150
           S Y++N K +   +N++VD L K    D      + MK + ++                 
Sbjct: 205 SRYEINCKPNVITYNIIVDGLCKVGREDEAKQLFEEMKTQGMIP---------------- 248

Query: 151 VKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRV-VDGRIKPDNDTYAI 209
                   + M   G + D+   N L+  +C++GK I+A + L V ++  I PD  TY  
Sbjct: 249 --------NEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNS 300

Query: 210 LLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMM 269
           L+EG+    D+ +A++ F  M  + G +PD V +Y+  LI        + E +     M+
Sbjct: 301 LIEGFCMVGDLNSARELFVSMPSK-GCEPD-VISYN-VLINGYSKTLKVEEAMKLYNEML 357

Query: 270 ERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNET 329
             G  P +  +    +       +  A+ ++  M    G   +++ Y + +   C ++  
Sbjct: 358 LVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMKAH-GIAENSYTYGIFLDGLCKNDCL 416

Query: 330 GAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNE---------NV 380
             AMKL  E+  +    +I+  N L + L K  KL  A  LF E + NE          +
Sbjct: 417 FEAMKLFTELKSSNFKLEIENLNCLIDGLCKAGKLETAWELF-EKLSNEGHEPNVVTYTI 475

Query: 381 LNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKY 440
           + H  CR         D   V I+    M  N C+    T N L+ G  + + L E V+ 
Sbjct: 476 MIHGFCREG-----QVDKANVLIQ---KMEANGCTPDIITYNTLMRGFYESNKLEEVVQL 527

Query: 441 AKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELL 476
              MA+K +       S +  +L K  K   Y+E L
Sbjct: 528 LHRMAQKDVSPDAITCSIVVDMLSKDEK---YQECL 560



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 61/240 (25%), Positives = 99/240 (41%), Gaps = 13/240 (5%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           ++  + + Y    +V++A+  ++ M   G + +V   +SLL  I   GK  DA +   V+
Sbjct: 332 SYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVM 391

Query: 197 DGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG- 254
               I  ++ TY I L+G  K   +  A K F E+         N       L  L+ G 
Sbjct: 392 KAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFTEL------KSSNFKLEIENLNCLIDGL 445

Query: 255 CD-GIYETVNSL-KRMMERGCNPGMTFFKLAFEE-CLTGQNLRGAEFIWGAMVGRIGFRP 311
           C  G  ET   L +++   G  P +  + +     C  GQ +  A  +   M    G  P
Sbjct: 446 CKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQ-VDKANVLIQKMEAN-GCTP 503

Query: 312 DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLF 371
           D   YN ++  +  SN+    ++LL  M      PD  T +I+ + L K  K  E   L 
Sbjct: 504 DIITYNTLMRGFYESNKLEEVVQLLHRMAQKDVSPDAITCSIVVDMLSKDEKYQECLHLL 563



 Score = 38.9 bits (89), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 34/148 (22%), Positives = 62/148 (41%), Gaps = 6/148 (4%)

Query: 308 GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEA 367
           G   D    N++++  C  N           ++  G  P+I TYN L + L    ++ EA
Sbjct: 99  GLSSDRCTLNILLNCLCNVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEA 158

Query: 368 SGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMI------ENHCSDLSETG 421
           + LF  M K     +       ++    + +  +A+K  + M+      E +C     T 
Sbjct: 159 TRLFLRMQKLGCTPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITY 218

Query: 422 NLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
           N++V GLC +    EA +  + M  +G+
Sbjct: 219 NIIVDGLCKVGREDEAKQLFEEMKTQGM 246


>gi|449457341|ref|XP_004146407.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13420,
           mitochondrial-like [Cucumis sativus]
 gi|449523938|ref|XP_004168980.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13420,
           mitochondrial-like [Cucumis sativus]
          Length = 506

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 106/455 (23%), Positives = 181/455 (39%), Gaps = 43/455 (9%)

Query: 48  NTPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLV 107
           + P  ++E  L    I  S   ++Q L     H   A+ FF ++    ++  S  ++N++
Sbjct: 49  HNPFHSMESSLQLHSISFSSHLLDQTLLRLTHHSKIALSFFDYANSLPSNPISTTSYNIL 108

Query: 108 VDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQY-GC 166
           +D+L K   FDA W  I  M  +      TF  +    + + R + AI  FD +E   G 
Sbjct: 109 LDILAKVRQFDAAWHLILQMDHKGT---DTFLLLIRRLISSGRTRQAIRAFDDIEGLTGN 165

Query: 167 KHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKT 226
           K  +     LL  +C+ G    A +           D   Y IL+ GW K      A++ 
Sbjct: 166 KVGIDDFCYLLDVLCKYGYVKVAVEVFNKRKEEFGVDVKIYTILIYGWCKIGRFEMAERF 225

Query: 227 FGEMVIEVGWDPDNVPAYDSYLITLLKGC----DGIYE-TVNSLKR----MMERGCNPGM 277
             +MV E G +P NV  Y+  L  + +      +G +E T+   ++    M +RG  P +
Sbjct: 226 LKDMV-ERGIEP-NVVTYNVLLNGVCRRASLHPEGRFEKTIRHAEKVFDEMRKRGIEPDV 283

Query: 278 TFFKLAFEECLTGQNLRGAEFIWGAM--VGRIGFRPDTHMYNMMISLYCYSNETGAAMKL 335
           T F +              E     +  +  +G  P    Y  +I   C          L
Sbjct: 284 TSFSIVLH---VYSRAHKPELSLDKLKQMKELGISPTVATYTSVIKCLCSCGRLEDGENL 340

Query: 336 LDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASG---LFNEMVKNENVLNHENCRAA--- 389
           ++EMV +G  P   TYN  F+   +GRK  + +G   L+ +M         E+C  A   
Sbjct: 341 IEEMVRSGISPSPTTYNCFFK-EYRGRK--DGAGALRLYKKM--------REDCLCAPSL 389

Query: 390 ------VRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKG 443
                 + ++++ D      + W  M E+      ++   ++ GLC+     EA ++   
Sbjct: 390 HTYNILLALFLNLDKKETLKELWNDMKESGVGPDLDSYTTIIHGLCEKQRWSEACQFFVE 449

Query: 444 MAEKGIQVTPFALSKLKQILIKARKEAVYEELLKK 478
           M E+G          L + LI++     +  L KK
Sbjct: 450 MIERGFLPQKVTFEMLYRGLIQSDMLRTWRRLKKK 484


>gi|356529489|ref|XP_003533323.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 550

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 79/324 (24%), Positives = 147/324 (45%), Gaps = 5/324 (1%)

Query: 127 MKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKT 186
           +K+   L+  T  ++     +   V+ A+   D +   G   D     +L++ +C+ G T
Sbjct: 140 LKRGYQLNAITLTTIMKGLCINGEVRKALEFHDSVVAQGFLLDEVTYGTLINGLCKIGLT 199

Query: 187 IDAWQFLRVVDGRI-KPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYD 245
            +A++ L  ++G++ +P+   Y ++++G  K+  V  A+  + + V+  G DPD V  Y 
Sbjct: 200 REAFELLHKMEGQVVRPNVVIYNMIVDGLCKDGLVTEARDLYSD-VVGRGIDPD-VFTY- 256

Query: 246 SYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVG 305
           + LI    G     E    L  M++R  N  +  + +  +       L  A  +   M+ 
Sbjct: 257 TCLIHGFCGLGQWREVTRLLCDMVDRNVNLNVYTYNILIDALCKKGMLGKAHDMRNLMIE 316

Query: 306 RIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLW 365
           R G RPD   +N ++S YC  N+   A KL D     G  PD+ +YNIL     K  ++ 
Sbjct: 317 R-GQRPDLVTFNTLMSGYCLYNDVVEARKLFDTFAECGITPDVWSYNILIIGYCKNNRID 375

Query: 366 EASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLV 425
           EA  LFN+M   +   N     + +     S     A + +  + +   S    T N+++
Sbjct: 376 EALSLFNKMNYKKLAPNIVTYSSLIDGLCKSGRISYAWELFSAIHDGGPSPNVITYNIML 435

Query: 426 AGLCDMHMLPEAVKYAKGMAEKGI 449
             LC + ++ +A++    M E+G+
Sbjct: 436 DALCKIQLVDKAIELFNLMFERGL 459



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 71/275 (25%), Positives = 115/275 (41%), Gaps = 41/275 (14%)

Query: 102 YAWNLVVDLLGKNCLFDAMWDAIKSM-KKENVLSLATFASVFSSYVVADRVKDAITTFDV 160
           Y +N+++D L K  +     D    M ++     L TF ++ S Y + + V +A   FD 
Sbjct: 289 YTYNILIDALCKKGMLGKAHDMRNLMIERGQRPDLVTFNTLMSGYCLYNDVVEARKLFDT 348

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVD-GRIKPDNDTYAILLEGWEKERD 219
             + G   DV++ N L+   C++ +  +A      ++  ++ P+  TY+ L++G  K   
Sbjct: 349 FAECGITPDVWSYNILIIGYCKNNRIDEALSLFNKMNYKKLAPNIVTYSSLIDGLCKSGR 408

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTF 279
           ++ A + F    I  G    NV  Y+  L  L K        +  + + +E         
Sbjct: 409 ISYAWELFSA--IHDGGPSPNVITYNIMLDALCK--------IQLVDKAIE--------L 450

Query: 280 FKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEM 339
           F L FE  LT                     P+   YN++I+ YC S     AM L +EM
Sbjct: 451 FNLMFERGLT---------------------PNVSSYNILINGYCKSKRIDEAMNLFEEM 489

Query: 340 VYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
                 PD  TYN L + L K  ++  A  LFN M
Sbjct: 490 HRRNLVPDSVTYNCLIDGLCKSGRISHAWELFNVM 524



 Score = 45.8 bits (107), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 2/120 (1%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVM 161
            +N+++D L K  L D   +    M +  +  +++++  + + Y  + R+ +A+  F+ M
Sbjct: 430 TYNIMLDALCKIQLVDKAIELFNLMFERGLTPNVSSYNILINGYCKSKRIDEAMNLFEEM 489

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV-DGRIKPDNDTYAILLEGWEKERDV 220
            +     D    N L+  +C+ G+   AW+   V+ DG    D  TY IL + + K + V
Sbjct: 490 HRRNLVPDSVTYNCLIDGLCKSGRISHAWELFNVMHDGGPPVDVITYNILFDAFSKIQHV 549


>gi|414869157|tpg|DAA47714.1| TPA: hypothetical protein ZEAMMB73_516901 [Zea mays]
          Length = 853

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 80/328 (24%), Positives = 148/328 (45%), Gaps = 10/328 (3%)

Query: 51  SPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDL 110
            P  E VLD    ++      QVLK  + H   A+ FF+W   Q   KH  + +  ++ +
Sbjct: 311 GPMTEHVLDNLHCKIDAFQANQVLKLLHDHT-VALGFFQWLKRQPGFKHDGHTYTTMIGI 369

Query: 111 LGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHD 169
           LG+   F  + + +  M + +   ++ T+  +  +Y  A+ +K+A+  F+ M++ G + D
Sbjct: 370 LGQARQFGVLKELLDEMSRAHCKPTVVTYNRIIHAYGRANYLKEAVKVFEEMQEAGYEPD 429

Query: 170 VFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFG 228
                +L+    + G    A   + R+ +  + PD  TY++++    K   +A A K F 
Sbjct: 430 RVTYCTLIDIHAKAGYLDIAMDLYGRMQEVGLSPDTFTYSVMVNCLGKGGQLAAAYKLFC 489

Query: 229 EMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSL-KRMMERGCNPGMTFFKLAFEEC 287
           EM IE G  P N+  Y+  ++  L+     YE V  L K M   G  P    + +  E  
Sbjct: 490 EM-IENGCTP-NLVTYN--IMIALQAKARNYENVVKLYKDMQVAGFRPDKITYSIVMEVL 545

Query: 288 LTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPD 347
               +L  AE ++  M  R  + PD  +Y +++ L+  +     A+     M+ +G  P+
Sbjct: 546 GHCGHLDEAEAVFIEM--RRDWAPDEPVYGLLVDLWGKAGNVDKALGWYQAMLQDGLQPN 603

Query: 348 IQTYNILFEFLVKGRKLWEASGLFNEMV 375
           + T N L    +K  +  +A  +   M+
Sbjct: 604 VPTCNSLLSAFLKMNRFQDAYIVLQNML 631



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 63/246 (25%), Positives = 100/246 (40%), Gaps = 5/246 (2%)

Query: 129 KENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTID 188
           + N+ SL    SV   Y    ++K    T  V++   CK D F  N +L  +      + 
Sbjct: 286 QSNLRSLKLLRSVEQYYHTLQQMKWGPMTEHVLDNLHCKIDAFQANQVLKLLHDHTVALG 345

Query: 189 AWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYL 248
            +Q+L+   G  K D  TY  ++    + R     K+   EM       P  V  Y+  +
Sbjct: 346 FFQWLKRQPG-FKHDGHTYTTMIGILGQARQFGVLKELLDEMS-RAHCKP-TVVTYNR-I 401

Query: 249 ITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIG 308
           I      + + E V   + M E G  P    +    +       L  A  ++G M   +G
Sbjct: 402 IHAYGRANYLKEAVKVFEEMQEAGYEPDRVTYCTLIDIHAKAGYLDIAMDLYGRMQ-EVG 460

Query: 309 FRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEAS 368
             PDT  Y++M++      +  AA KL  EM+ NG  P++ TYNI+     K R      
Sbjct: 461 LSPDTFTYSVMVNCLGKGGQLAAAYKLFCEMIENGCTPNLVTYNIMIALQAKARNYENVV 520

Query: 369 GLFNEM 374
            L+ +M
Sbjct: 521 KLYKDM 526


>gi|302806733|ref|XP_002985098.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
 gi|300147308|gb|EFJ13973.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
          Length = 659

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 85/379 (22%), Positives = 158/379 (41%), Gaps = 42/379 (11%)

Query: 109 DLLGKNCLFDAMWDAIKSMKKENVL----------SLATFASVFSSYVVADRVKDAITTF 158
           D++  N L D      K  + E +L          ++ T+ ++   +  ADR+ DA    
Sbjct: 266 DVVTYNSLMDGFCKVSKMDEAERLLEDMVGRRCAPTVITYTTLIGGFSRADRLADAYRVM 325

Query: 159 DVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRV-VDGRIKPDNDTYAILLEGWEKE 217
           + M + G   D+   N LL  +C+ GK  +A + L V V+    PD  TY+IL+ G  K 
Sbjct: 326 EDMFKAGISPDLVTYNCLLDGLCKAGKLEEAHELLEVMVEKDCAPDVVTYSILVNGLCKL 385

Query: 218 RDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGM 277
             V +A+    EM++E G  P N+  +++ +    K    + E    L+ M E  C P +
Sbjct: 386 GKVDDARLLL-EMMLERGCQP-NLVTFNTMIDGFCKA-GKVDEGHKVLELMKEVSCTPDV 442

Query: 278 TFFKLAFEECLTGQNLRGAEFIWGA----------------------------MVGRIGF 309
             +    +       ++ A  I G                             ++ + G 
Sbjct: 443 VTYSTLIDGYCKANRMQDAFAILGISPDKASYSSMLEGLCSTGKVEEAQEVMDLMTKQGC 502

Query: 310 RPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASG 369
            P +  Y ++I   C       A+K+L  M   G  P++ TY+IL   L K +++ +A  
Sbjct: 503 PPTSSHYALIIGGLCDVERGDEALKMLQVMSERGCEPNLYTYSILINGLCKTKRVEDAIN 562

Query: 370 LFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLC 429
           + + M++   V +     + +  +   +    A + +K M ++ C       N+L++G C
Sbjct: 563 VLDVMLEKGCVPDVATYTSLIDGFCKINKMDAAYQCFKTMRDSGCEPDKLAYNILISGFC 622

Query: 430 DMHMLPEAVKYAKGMAEKG 448
               + +A++  + M EKG
Sbjct: 623 QSGNVEKAIEVMQLMLEKG 641



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 78/336 (23%), Positives = 143/336 (42%), Gaps = 17/336 (5%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-V 195
           ++ +V +    + + ++A    + M +  C  DV   NSL+   C+  K  +A + L  +
Sbjct: 234 SYNTVVACLCESGKYEEAGKILEKMIEKKCGPDVVTYNSLMDGFCKVSKMDEAERLLEDM 293

Query: 196 VDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
           V  R  P   TY  L+ G+ +   +A+A +   +M  + G  PD V  Y+  L  L K  
Sbjct: 294 VGRRCAPTVITYTTLIGGFSRADRLADAYRVMEDM-FKAGISPDLV-TYNCLLDGLCKA- 350

Query: 256 DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHM 315
             + E    L+ M+E+ C P +  + +          +  A  +   M+ R G +P+   
Sbjct: 351 GKLEEAHELLEVMVEKDCAPDVVTYSILVNGLCKLGKVDDARLLLEMMLER-GCQPNLVT 409

Query: 316 YNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEA---SGLFN 372
           +N MI  +C + +     K+L+ M      PD+ TY+ L +   K  ++ +A    G+  
Sbjct: 410 FNTMIDGFCKAGKVDEGHKVLELMKEVSCTPDVVTYSTLIDGYCKANRMQDAFAILGISP 469

Query: 373 EMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMH 432
           +     ++L        V           A +    M +  C   S    L++ GLCD+ 
Sbjct: 470 DKASYSSMLEGLCSTGKVEE---------AQEVMDLMTKQGCPPTSSHYALIIGGLCDVE 520

Query: 433 MLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARK 468
              EA+K  + M+E+G +   +  S L   L K ++
Sbjct: 521 RGDEALKMLQVMSERGCEPNLYTYSILINGLCKTKR 556



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 71/318 (22%), Positives = 134/318 (42%), Gaps = 21/318 (6%)

Query: 109 DLLGKNCLFDAMWDAIK----------SMKKENVLSLATFASVFSSYVVADRVKDAITTF 158
           DL+  NCL D +  A K           ++K+    + T++ + +      +V DA    
Sbjct: 336 DLVTYNCLLDGLCKAGKLEEAHELLEVMVEKDCAPDVVTYSILVNGLCKLGKVDDARLLL 395

Query: 159 DVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV-DGRIKPDNDTYAILLEGWEKE 217
           ++M + GC+ ++   N+++   C+ GK  +  + L ++ +    PD  TY+ L++G+ K 
Sbjct: 396 EMMLERGCQPNLVTFNTMIDGFCKAGKVDEGHKVLELMKEVSCTPDVVTYSTLIDGYCKA 455

Query: 218 RDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGM 277
             + +A    G         PD   +Y S L  L      + E    +  M ++GC P  
Sbjct: 456 NRMQDAFAILG-------ISPDKA-SYSSMLEGLCST-GKVEEAQEVMDLMTKQGCPPTS 506

Query: 278 TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLD 337
           + + L        +    A  +   M  R G  P+ + Y+++I+  C +     A+ +LD
Sbjct: 507 SHYALIIGGLCDVERGDEALKMLQVMSER-GCEPNLYTYSILINGLCKTKRVEDAINVLD 565

Query: 338 EMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSD 397
            M+  G  PD+ TY  L +   K  K+  A   F  M  +    +       +  +  S 
Sbjct: 566 VMLEKGCVPDVATYTSLIDGFCKINKMDAAYQCFKTMRDSGCEPDKLAYNILISGFCQSG 625

Query: 398 DPYVAIKFWKYMIENHCS 415
           +   AI+  + M+E  C+
Sbjct: 626 NVEKAIEVMQLMLEKGCN 643



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 80/312 (25%), Positives = 123/312 (39%), Gaps = 40/312 (12%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           T+  +        R+ +A    D M Q  C  D    N L++ +C+ GK   A   L+++
Sbjct: 94  TYCILIHGLCQCQRIDEAYQLLDEMIQKDCHPDAAVYNCLIAGLCKMGKIDAARNVLKMM 153

Query: 197 DGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
             R   PD  TY  L+ G  +   +  A+K   +M  E G  PD V AY++ L  L K  
Sbjct: 154 LERSCVPDVITYTSLIVGCCQTNALDEARKLMEKMK-ESGLTPDTV-AYNALLNGLCKQ- 210

Query: 256 DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHM 315
           + + E    L+ M+E G                                      PDT  
Sbjct: 211 NQLEEVSKLLEEMVEAG------------------------------------REPDTFS 234

Query: 316 YNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
           YN +++  C S +   A K+L++M+     PD+ TYN L +   K  K+ EA  L  +MV
Sbjct: 235 YNTVVACLCESGKYEEAGKILEKMIEKKCGPDVVTYNSLMDGFCKVSKMDEAERLLEDMV 294

Query: 376 KNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLP 435
                         +  +  +D    A +  + M +   S    T N L+ GLC    L 
Sbjct: 295 GRRCAPTVITYTTLIGGFSRADRLADAYRVMEDMFKAGISPDLVTYNCLLDGLCKAGKLE 354

Query: 436 EAVKYAKGMAEK 447
           EA +  + M EK
Sbjct: 355 EAHELLEVMVEK 366



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 59/257 (22%), Positives = 113/257 (43%), Gaps = 10/257 (3%)

Query: 104 WNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVME 162
           +N ++D   K    D     ++ MK+ +    + T++++   Y  A+R++DA        
Sbjct: 410 FNTMIDGFCKAGKVDEGHKVLELMKEVSCTPDVVTYSTLIDGYCKANRMQDAFAIL---- 465

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVAN 222
             G   D  + +S+L  +C  GK  +A + + ++  +  P   ++  L+ G   + +  +
Sbjct: 466 --GISPDKASYSSMLEGLCSTGKVEEAQEVMDLMTKQGCPPTSSHYALIIGGLCDVERGD 523

Query: 223 AKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKL 282
                 +++ E G +P N+  Y S LI  L     + + +N L  M+E+GC P +  +  
Sbjct: 524 EALKMLQVMSERGCEP-NLYTY-SILINGLCKTKRVEDAINVLDVMLEKGCVPDVATYTS 581

Query: 283 AFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYN 342
             +       +  A   +  M    G  PD   YN++IS +C S     A++++  M+  
Sbjct: 582 LIDGFCKINKMDAAYQCFKTMRDS-GCEPDKLAYNILISGFCQSGNVEKAIEVMQLMLEK 640

Query: 343 GAFPDIQTYNILFEFLV 359
           G  PD  TY  L   L 
Sbjct: 641 GCNPDAATYFSLMRSLT 657



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 71/295 (24%), Positives = 109/295 (36%), Gaps = 49/295 (16%)

Query: 201 KPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVG-------WDPDNV------------ 241
           KP N TY  L+ G+ +     N+K     MV+E+        + PD +            
Sbjct: 21  KPSNSTYGALITGFSR---AGNSK-----MVLEIANEMLARRFSPDVITHNTILKAYCQI 72

Query: 242 -----------------PAYDSYLITL--LKGCDGIYETVNSLKRMMERGCNPGMTFFKL 282
                            P   +Y I +  L  C  I E    L  M+++ C+P    +  
Sbjct: 73  GDLDRALSHFRGKMWCSPTAFTYCILIHGLCQCQRIDEAYQLLDEMIQKDCHPDAAVYNC 132

Query: 283 AFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYN 342
                     +  A  +   M+ R    PD   Y  +I   C +N    A KL+++M  +
Sbjct: 133 LIAGLCKMGKIDAARNVLKMMLER-SCVPDVITYTSLIVGCCQTNALDEARKLMEKMKES 191

Query: 343 GAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVA 402
           G  PD   YN L   L K  +L E S L  EMV+     +  +    V    +S     A
Sbjct: 192 GLTPDTVAYNALLNGLCKQNQLEEVSKLLEEMVEAGREPDTFSYNTVVACLCESGKYEEA 251

Query: 403 IKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALS 457
            K  + MIE  C     T N L+ G C +  + EA +  + M   G +  P  ++
Sbjct: 252 GKILEKMIEKKCGPDVVTYNSLMDGFCKVSKMDEAERLLEDMV--GRRCAPTVIT 304



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 71/170 (41%), Gaps = 3/170 (1%)

Query: 305 GRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKL 364
           G++   P    Y ++I   C       A +LLDEM+     PD   YN L   L K  K+
Sbjct: 84  GKMWCSPTAFTYCILIHGLCQCQRIDEAYQLLDEMIQKDCHPDAAVYNCLIAGLCKMGKI 143

Query: 365 WEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLL 424
             A  +   M++   V +     + +     ++    A K  + M E+  +  +   N L
Sbjct: 144 DAARNVLKMMLERSCVPDVITYTSLIVGCCQTNALDEARKLMEKMKESGLTPDTVAYNAL 203

Query: 425 VAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEE 474
           + GLC  + L E  K  + M E G +   F+ + +   L ++ K   YEE
Sbjct: 204 LNGLCKQNQLEEVSKLLEEMVEAGREPDTFSYNTVVACLCESGK---YEE 250


>gi|413916119|gb|AFW56051.1| hypothetical protein ZEAMMB73_517553 [Zea mays]
          Length = 663

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 87/361 (24%), Positives = 154/361 (42%), Gaps = 12/361 (3%)

Query: 94  QLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVK 152
           +L+ K S + +N ++  L        + D    M+ E ++ ++ T+ ++    + + +++
Sbjct: 295 RLSKKASSFTYNPLITGLLARGFVKKVDDLQLEMENEGIMPTVVTYNAMIHGLLQSGQIE 354

Query: 153 DAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILL 211
            A   F  M   G   DV   NSLL+  C+ G   +A   F  +    + P   TY IL+
Sbjct: 355 AAQAKFVEMRAMGLLPDVITYNSLLNGYCKAGNQKEALLLFGDLRRAGLAPTVLTYNILI 414

Query: 212 EGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYE---TVNSLKRM 268
           +G+ +  D+  A++   EMV E G  PD      +Y I L+KG   +     T      M
Sbjct: 415 DGYCRLGDLEEARRLKEEMV-EQGCLPDVY----TYTI-LMKGSHNVCSLAMTREFFDEM 468

Query: 269 MERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNE 328
           + +G  P    +       +T  ++    F    ++   G   DT  YN++I   C +  
Sbjct: 469 LSKGLRPDCFAYNTRICAEITLGDI-SKSFQLREVIMLEGISSDTVTYNILIDGLCKTGN 527

Query: 329 TGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRA 388
              A +L+ +M+ NG  PD  TY  L     +   L EA   FN+M+ +    +      
Sbjct: 528 LKDAEELMMQMISNGLQPDCITYTCLIHAHCERGFLREARKFFNDMISDGLPPSAVTYTV 587

Query: 389 AVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448
            +  Y    + Y A  +++ M+E        T N+L+  LC M     A ++   M E+G
Sbjct: 588 IIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRMGRTQLAYRHFYEMLERG 647

Query: 449 I 449
           +
Sbjct: 648 L 648



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 75/316 (23%), Positives = 129/316 (40%), Gaps = 41/316 (12%)

Query: 104 WNLVVDLLGKNCLFDAMWDAIKSMKKENVLS-LATFASVFSSYVVADRVKDAITTFDVME 162
           +N ++  L ++   +A       M+   +L  + T+ S+ + Y  A   K+A+  F  + 
Sbjct: 340 YNAMIHGLLQSGQIEAAQAKFVEMRAMGLLPDVITYNSLLNGYCKAGNQKEALLLFGDLR 399

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYAILLEGWEKERDVA 221
           + G    V   N L+   CR G   +A +    +V+    PD  TY IL++G      +A
Sbjct: 400 RAGLAPTVLTYNILIDGYCRLGDLEEARRLKEEMVEQGCLPDVYTYTILMKGSHNVCSLA 459

Query: 222 NAKKTFGEMVIEVGWDPDNVPAYDSYL-----------------ITLLKGC--------- 255
             ++ F EM+ + G  PD   AY++ +                 + +L+G          
Sbjct: 460 MTREFFDEMLSK-GLRPDCF-AYNTRICAEITLGDISKSFQLREVIMLEGISSDTVTYNI 517

Query: 256 --DGIYETVNS------LKRMMERGCNPG-MTFFKLAFEECLTGQNLRGAEFIWGAMVGR 306
             DG+ +T N       + +M+  G  P  +T+  L    C  G  LR A   +  M+  
Sbjct: 518 LIDGLCKTGNLKDAEELMMQMISNGLQPDCITYTCLIHAHCERG-FLREARKFFNDMISD 576

Query: 307 IGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWE 366
            G  P    Y ++I  YC      +A     +M+  G  P+  TYN+L   L +  +   
Sbjct: 577 -GLPPSAVTYTVIIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRMGRTQL 635

Query: 367 ASGLFNEMVKNENVLN 382
           A   F EM++   V N
Sbjct: 636 AYRHFYEMLERGLVPN 651



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 63/258 (24%), Positives = 100/258 (38%), Gaps = 27/258 (10%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVME 162
           A  L  +++ + CL D     I      NV SLA     F                D M 
Sbjct: 426 ARRLKEEMVEQGCLPDVYTYTILMKGSHNVCSLAMTREFF----------------DEML 469

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV--DGRIKPDNDTYAILLEGWEKERDV 220
             G + D FA N+ + A    G    ++Q   V+  +G I  D  TY IL++G  K  ++
Sbjct: 470 SKGLRPDCFAYNTRICAEITLGDISKSFQLREVIMLEG-ISSDTVTYNILIDGLCKTGNL 528

Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDG--IYETVNSLKRMMERGCNPGMT 278
            +A++   +M I  G  PD +    +Y   +   C+   + E       M+  G  P   
Sbjct: 529 KDAEELMMQM-ISNGLQPDCI----TYTCLIHAHCERGFLREARKFFNDMISDGLPPSAV 583

Query: 279 FFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDE 338
            + +         NL  A + W   +   G  P+   YN++I   C    T  A +   E
Sbjct: 584 TYTVIIHAYCRRGNLYSA-YGWFRKMLEEGVEPNEITYNVLIHALCRMGRTQLAYRHFYE 642

Query: 339 MVYNGAFPDIQTYNILFE 356
           M+  G  P+  TY +L +
Sbjct: 643 MLERGLVPNKYTYTLLID 660



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 71/289 (24%), Positives = 111/289 (38%), Gaps = 48/289 (16%)

Query: 167 KHDVFALNSLLSAICRDG--KTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAK 224
           K   F  N L++ +   G  K +D  Q L + +  I P   TY  ++ G  +   +  A+
Sbjct: 299 KASSFTYNPLITGLLARGFVKKVDDLQ-LEMENEGIMPTVVTYNAMIHGLLQSGQIEAAQ 357

Query: 225 KTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAF 284
             F EM   +G  PD +                   T NSL   +   C  G        
Sbjct: 358 AKFVEMR-AMGLLPDVI-------------------TYNSL---LNGYCKAG-------- 386

Query: 285 EECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGA 344
                  N + A  ++G +  R G  P    YN++I  YC   +   A +L +EMV  G 
Sbjct: 387 -------NQKEALLLFGDL-RRAGLAPTVLTYNILIDGYCRLGDLEEARRLKEEMVEQGC 438

Query: 345 FPDIQTYNILFEFLVKGRKLWEASGLFNEMVK---NENVLNHENCRAAVRVYMDSDDPYV 401
            PD+ TY IL +       L      F+EM+      +   + N R    + +       
Sbjct: 439 LPDVYTYTILMKGSHNVCSLAMTREFFDEMLSKGLRPDCFAY-NTRICAEITLGDISKSF 497

Query: 402 AIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQ 450
            ++    M+E   SD + T N+L+ GLC    L +A +    M   G+Q
Sbjct: 498 QLR-EVIMLEGISSD-TVTYNILIDGLCKTGNLKDAEELMMQMISNGLQ 544


>gi|225429339|ref|XP_002269471.1| PREDICTED: pentatricopeptide repeat-containing protein At5g02860
           [Vitis vinifera]
          Length = 811

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 76/271 (28%), Positives = 122/271 (45%), Gaps = 11/271 (4%)

Query: 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDV 160
           Y +N ++    +  L++     +K MK         T+ ++   Y  + R K+A+     
Sbjct: 272 YTYNTLISCCRRGNLYEEAAGVLKEMKLAGFSPDKVTYNALLDVYGKSRRSKEAMEVLQE 331

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERD 219
           ME  GC   +   NSL+SA  RDG   DA +   ++V+  IKPD  TY  LL G+EK   
Sbjct: 332 MEGNGCPPSIVTYNSLISAYARDGLLEDALELKNQMVEKGIKPDVFTYTTLLSGFEKAGK 391

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTF 279
              A + F EM  E G  P N+  +++ LI +        E +   + +    C+P +  
Sbjct: 392 DKAAVQIFEEMRNE-GCKP-NICTFNA-LIKMHGNRGKFTEMMKVFEDIKTFQCSPDIVT 448

Query: 280 FKLAFEECLTGQNLRGAEFIWGAM--VGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLD 337
           +       + GQN   +E + G    + R GF P+   +N +IS Y        AM +  
Sbjct: 449 WNTLLS--VFGQNGMDSE-VSGVFKEMKRAGFVPERDTFNTLISSYSRCGSFDQAMAVYK 505

Query: 338 EMVYNGAFPDIQTYNILFEFLVKGRKLWEAS 368
            M+  G  PD+ +YN +   L +G  LW+ S
Sbjct: 506 RMLEAGVNPDLSSYNAVLAALARG-GLWKQS 535



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 81/314 (25%), Positives = 127/314 (40%), Gaps = 47/314 (14%)

Query: 104 WNLVVDLLGKNCLFDAMWDAIKSMKKEN-VLSLATFASVFSSYVVADRVKDAITTFDVME 162
           WN ++ + G+N +   +    K MK+   V    TF ++ SSY        A+  +  M 
Sbjct: 449 WNTLLSVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISSYSRCGSFDQAMAVYKRML 508

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLE----GWEKE 217
           + G   D+ + N++L+A+ R G    + + L  + DGR KP+  TY  LL     G E E
Sbjct: 509 EAGVNPDLSSYNAVLAALARGGLWKQSEKVLAEMKDGRCKPNELTYCSLLHAYANGKEIE 568

Query: 218 RDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGM 277
           R  A A++ +  ++     +P  V      L+ +   CD + ET  +   + +RG +P +
Sbjct: 569 RMCALAEEIYSGII-----EPRAVLL--KTLVLVNSKCDLLMETERAFLELRQRGFSPDI 621

Query: 278 TFF------------------------KLAFEECLTGQNL------RGAEFIWGAMVGR- 306
           T                          +  F   LT  N       R A F     + R 
Sbjct: 622 TTLNAMVSIYGRRQMVAKANEILDCMKRGGFTPSLTTYNSLMYMYSRSANFERSEEILRE 681

Query: 307 ---IGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRK 363
               G RPD   YN +I  YC +     A ++L EM  +G  PDI TYN           
Sbjct: 682 ILAKGIRPDIISYNTVIYAYCRNGRMRDASRVLSEMRESGPAPDIITYNTFIASYAADSM 741

Query: 364 LWEASGLFNEMVKN 377
             EA  +   M+K+
Sbjct: 742 FVEAIDVVCYMIKH 755



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 86/393 (21%), Positives = 150/393 (38%), Gaps = 51/393 (12%)

Query: 78  YSHPGPAVKFFRWSAYQLNDKHSPYAWN-----LVVDLLGKNCLFDAMWDAIKSMKKENV 132
           Y     A++ F W     N K S    N     +++ +LGK     A    + ++ K+  
Sbjct: 140 YKKCDTALRVFEWVR---NRKESELLLNGSIIAVIISILGKGGRVSAAASLLHNLCKDGF 196

Query: 133 -LSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ 191
            + +  + S+ +++    R ++A+  F  ME+ GCK  +   N +L+   + G   +   
Sbjct: 197 DVDVYAYTSMITAFTSNGRYREAVMVFKKMEEVGCKPTLITYNVILNVYGKMGMPWNKMV 256

Query: 192 FL--RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLI 249
            L  R+    I PD+ TY  L+    +      A     EM +  G+ PD V  Y++ L+
Sbjct: 257 GLVDRMKSAGIAPDSYTYNTLISCCRRGNLYEEAAGVLKEMKL-AGFSPDKV-TYNA-LL 313

Query: 250 TLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGF 309
            +        E +  L+ M   GC P +  +            L  A  +   MV + G 
Sbjct: 314 DVYGKSRRSKEAMEVLQEMEGNGCPPSIVTYNSLISAYARDGLLEDALELKNQMVEK-GI 372

Query: 310 RPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKL----- 364
           +PD   Y  ++S +  + +  AA+++ +EM   G  P+I T+N L +      K      
Sbjct: 373 KPDVFTYTTLLSGFEKAGKDKAAVQIFEEMRNEGCKPNICTFNALIKMHGNRGKFTEMMK 432

Query: 365 ----------------W--------------EASGLFNEMVKNENVLNHENCRAAVRVYM 394
                           W              E SG+F EM +   V   +     +  Y 
Sbjct: 433 VFEDIKTFQCSPDIVTWNTLLSVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISSYS 492

Query: 395 DSDDPYVAIKFWKYMIENHCS-DLSETGNLLVA 426
                  A+  +K M+E   + DLS    +L A
Sbjct: 493 RCGSFDQAMAVYKRMLEAGVNPDLSSYNAVLAA 525



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 67/252 (26%), Positives = 97/252 (38%), Gaps = 55/252 (21%)

Query: 235 GWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLR 294
           G+D D V AY S +IT         E V   K+M E GC P +  + +         N+ 
Sbjct: 195 GFDVD-VYAYTS-MITAFTSNGRYREAVMVFKKMEEVGCKPTLITYNVIL-------NVY 245

Query: 295 GAEFI-WGAMVGRI------GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPD 347
           G   + W  MVG +      G  PD++ YN +IS     N    A  +L EM   G  PD
Sbjct: 246 GKMGMPWNKMVGLVDRMKSAGIAPDSYTYNTLISCCRRGNLYEEAAGVLKEMKLAGFSPD 305

Query: 348 IQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWK 407
             TYN L +   K R+  EA  +  EM  N        C  ++  Y              
Sbjct: 306 KVTYNALLDVYGKSRRSKEAMEVLQEMEGN-------GCPPSIVTY-------------- 344

Query: 408 YMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKAR 467
                         N L++      +L +A++    M EKGI+   F  + L     KA 
Sbjct: 345 --------------NSLISAYARDGLLEDALELKNQMVEKGIKPDVFTYTTLLSGFEKAG 390

Query: 468 KE----AVYEEL 475
           K+     ++EE+
Sbjct: 391 KDKAAVQIFEEM 402


>gi|356518398|ref|XP_003527866.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 603

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 82/301 (27%), Positives = 123/301 (40%), Gaps = 67/301 (22%)

Query: 169 DVFALNSLLSAICRDGKTIDAWQFLRVVD--GRIKPDNDTYAILLEGWEKERDVANAKKT 226
           DV A  SL+   CR GKT  A + + +++  G + PD  TY +L+ G+ K  ++  A + 
Sbjct: 141 DVIACTSLIRGFCRSGKTRKATRIMEILENSGAV-PDVITYNVLIGGYCKSGEIDKALQV 199

Query: 227 FGEMVIEVGWDPDNVPAYDSYLITLLKGCDG--IYETVNSLKRMMERGCNPGMTFFKLAF 284
              M +     PD V  Y++ L +L   CD   + E +  L R M+R C           
Sbjct: 200 LERMSVA----PD-VVTYNTILRSL---CDSGKLKEAMEVLDRQMQREC----------- 240

Query: 285 EECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGA 344
                                     PD   Y ++I   C  +  G AMKLLDEM   G 
Sbjct: 241 -------------------------YPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGC 275

Query: 345 FPDIQTYNILFEFLVKGRKLWEASGLFNEM--------VKNENVLNHENCRAAVRVYMDS 396
            PD+ TYN+L   + K  +L EA    N M        V   N++    C      +MD+
Sbjct: 276 KPDVVTYNVLINGICKEGRLDEAIKFLNNMPLYGCQPNVITHNIILRSMCSTG--RWMDA 333

Query: 397 DDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFAL 456
           +      +    M+   CS    T N+L+  LC   +L  A+   + M + G    P +L
Sbjct: 334 E------RLLADMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCM--PNSL 385

Query: 457 S 457
           S
Sbjct: 386 S 386



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 84/342 (24%), Positives = 152/342 (44%), Gaps = 13/342 (3%)

Query: 116 LFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNS 175
           L +AM    + M++E    + T+  +  +      V  A+   D M + GCK DV   N 
Sbjct: 225 LKEAMEVLDRQMQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNV 284

Query: 176 LLSAICRDGKTIDAWQFLRVVD-GRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEV 234
           L++ IC++G+  +A +FL  +     +P+  T+ I+L          +A++   +M +  
Sbjct: 285 LINGICKEGRLDEAIKFLNNMPLYGCQPNVITHNIILRSMCSTGRWMDAERLLADM-LRK 343

Query: 235 GWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNP-GMTFFKLAFEECLTGQNL 293
           G  P  V    + LI  L     +   ++ L++M + GC P  +++  L    C   +  
Sbjct: 344 GCSPSVVTF--NILINFLCRKRLLGRAIDVLEKMPKHGCMPNSLSYNPLLHGFCQEKKMD 401

Query: 294 RGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNI 353
           R  E++   MV R G  PD   YN +++  C   +  AA+++L+++   G  P + TYN 
Sbjct: 402 RAIEYLE-IMVSR-GCYPDIVTYNTLLTALCKDGKADAAVEILNQLSSKGCSPVLITYNT 459

Query: 354 LFEFLVKGRKLWEASGLFNEMVK---NENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMI 410
           + + L K  K   A+ L  EM +     +++ +      +      D+   AIK +  M 
Sbjct: 460 VIDGLTKVGKTEYAAELLEEMRRKGLKPDIITYSTLLRGLGCEGKVDE---AIKIFHDME 516

Query: 411 ENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVT 452
                  + T N ++ GLC       A+ +   M EKG + T
Sbjct: 517 GLSIKPSAVTYNAIMLGLCKAQQTSRAIDFLAYMVEKGCKPT 558



 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 68/269 (25%), Positives = 119/269 (44%), Gaps = 10/269 (3%)

Query: 110 LLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKH 168
           L+G  C    +  A++ +++ +V   + T+ ++  S   + ++K+A+   D   Q  C  
Sbjct: 183 LIGGYCKSGEIDKALQVLERMSVAPDVVTYNTILRSLCDSGKLKEAMEVLDRQMQRECYP 242

Query: 169 DVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTF 227
           DV     L+ A C D     A + L  +  +  KPD  TY +L+ G  KE  +  A K  
Sbjct: 243 DVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFL 302

Query: 228 GEMVIEVGWDPDNVPAYDSYLITLLKGCDGI--YETVNSLKRMMERGCNPGMTFFKLAFE 285
             M +  G  P+ +    ++ I L   C      +    L  M+ +GC+P +  F +   
Sbjct: 303 NNMPL-YGCQPNVI----THNIILRSMCSTGRWMDAERLLADMLRKGCSPSVVTFNILIN 357

Query: 286 ECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAF 345
             L  + L G        + + G  P++  YN ++  +C   +   A++ L+ MV  G +
Sbjct: 358 -FLCRKRLLGRAIDVLEKMPKHGCMPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCY 416

Query: 346 PDIQTYNILFEFLVKGRKLWEASGLFNEM 374
           PDI TYN L   L K  K   A  + N++
Sbjct: 417 PDIVTYNTLLTALCKDGKADAAVEILNQL 445



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 64/272 (23%), Positives = 107/272 (39%), Gaps = 43/272 (15%)

Query: 89  RWSAYQLNDKHSP--YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLA-TFASVFSSY 145
           R  A  L    SP    +N++++ L +  L     D ++ M K   +  + ++  +   +
Sbjct: 335 RLLADMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCMPNSLSYNPLLHGF 394

Query: 146 VVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDN 204
               ++  AI   ++M   GC  D+   N+LL+A+C+DGK   A + L  +  +   P  
Sbjct: 395 CQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKADAAVEILNQLSSKGCSPVL 454

Query: 205 DTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNS 264
            TY  +++G  K      A +   EM  + G  PD +  Y + L  L  GC+G  +    
Sbjct: 455 ITYNTVIDGLTKVGKTEYAAELLEEMRRK-GLKPD-IITYSTLLRGL--GCEGKVDE--- 507

Query: 265 LKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYC 324
                                          A  I+  M G +  +P    YN ++   C
Sbjct: 508 -------------------------------AIKIFHDMEG-LSIKPSAVTYNAIMLGLC 535

Query: 325 YSNETGAAMKLLDEMVYNGAFPDIQTYNILFE 356
            + +T  A+  L  MV  G  P   TY IL E
Sbjct: 536 KAQQTSRAIDFLAYMVEKGCKPTKATYTILIE 567


>gi|357144033|ref|XP_003573143.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g38730-like [Brachypodium distachyon]
          Length = 599

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 77/300 (25%), Positives = 121/300 (40%), Gaps = 15/300 (5%)

Query: 144 SYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKP 202
           S+  + R  DA   FD M   G   D  A  +LL+A+ R   T  A + F  +    +  
Sbjct: 120 SHSHSARPHDAARVFDQMRARGLAPDAHACTALLTALARARMTATAHKVFNEMGRAGVAM 179

Query: 203 DNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVP----AYDSYL-ITLLKGCDG 257
           +   Y  +L    K RD   A+     M      D   VP    ++++ + + + KG   
Sbjct: 180 NTHVYNAMLHVCLKARDALRAEGLMTRM------DAAGVPLDRFSFNTVIALYVRKGMQ- 232

Query: 258 IYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYN 317
            YE +   +RM + G  P +  +            ++ A  +   M+      PDT  Y 
Sbjct: 233 -YEAMCVRERMQDEGVEPDIVTWNTVIHGLCKEGRMKEAAQLRTDMIA-AAVEPDTVTYT 290

Query: 318 MMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKN 377
            ++  YC   + G A+KL +EM   G  P + TYN +   L +  K+ E +GL +EM   
Sbjct: 291 TLVDGYCRIGDVGEAVKLREEMEAGGMVPGVATYNAIIRKLCEDGKMKEVNGLLSEMDGR 350

Query: 378 ENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEA 437
           +   +H  C   +  Y    D   A K  K M+E+       T   L+ G C    L EA
Sbjct: 351 KVQADHVTCNTLINSYAKRGDMTSACKVKKRMMESGLQLDQFTYKALIHGFCKAKELDEA 410



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 67/276 (24%), Positives = 114/276 (41%), Gaps = 44/276 (15%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-V 195
           +F +V + YV      +A+   + M+  G + D+   N+++  +C++G+  +A Q    +
Sbjct: 218 SFNTVIALYVRKGMQYEAMCVRERMQDEGVEPDIVTWNTVIHGLCKEGRMKEAAQLRTDM 277

Query: 196 VDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
           +   ++PD  TY  L++G+ +  DV  A K   EM  E G     VP   +Y   + K C
Sbjct: 278 IAAAVEPDTVTYTTLVDGYCRIGDVGEAVKLREEM--EAG---GMVPGVATYNAIIRKLC 332

Query: 256 -DGIYETVNSL------------------------------------KRMMERGCNPGMT 278
            DG  + VN L                                    KRMME G      
Sbjct: 333 EDGKMKEVNGLLSEMDGRKVQADHVTCNTLINSYAKRGDMTSACKVKKRMMESGLQLDQF 392

Query: 279 FFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDE 338
            +K         + L  A+     M+GR GF P+  +++ ++  +C  N T A + + DE
Sbjct: 393 TYKALIHGFCKAKELDEAKEALFEMMGR-GFSPNYSVFSWLVDGFCKKNNTDAVLLIPDE 451

Query: 339 MVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
           ++  G  PD   Y  L   L K   +  A  + ++M
Sbjct: 452 LIKRGLPPDKSVYRSLIRRLCKKGLVDLAQKVLHQM 487


>gi|255574927|ref|XP_002528370.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532238|gb|EEF34042.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 712

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 79/322 (24%), Positives = 142/322 (44%), Gaps = 12/322 (3%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-F 192
           +L  F+S+ +       +K A    + M + G K +V+   +L+  +C+ G T  A++ F
Sbjct: 297 NLINFSSLINGLCKIGSIKQAFEMLEEMVRKGWKPNVYTHTALIDGLCKKGWTEKAFRLF 356

Query: 193 LRVVDG-RIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITL 251
           L++V     KP+  TY  ++ G+ KE  +  A     EM++    +   VP  ++Y   +
Sbjct: 357 LKLVRSDNYKPNVYTYTCMINGYCKEEKLNRA-----EMLLIRMKEQGLVPNTNTYTCLI 411

Query: 252 LKGCD-GIYETVNSLKRMM-ERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIG 308
              C  G +     L  +M + G  P + T+  +    C  G+     + +   +  + G
Sbjct: 412 DGHCKAGNFGRAYELMDLMGKEGFTPNIFTYNAIIDGLCKKGRFPEAYKLLRRGL--KSG 469

Query: 309 FRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEAS 368
              D   Y ++IS +C   +   A+ +   M   G  PD+ TYN+L     + +K+ E+ 
Sbjct: 470 LHADKVTYTILISEFCRQTDNKQALAIFSRMFKVGLQPDMHTYNVLIATFCRQKKVEESE 529

Query: 369 GLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGL 428
            LF E V    +   E   + +  Y        AIKF+  M +  C   S T   L++GL
Sbjct: 530 KLFEEAVGLGLLPTKETYTSMICGYCRDGHISSAIKFFHKMRDYGCKPDSITYGALISGL 589

Query: 429 CDMHMLPEAVKYAKGMAEKGIQ 450
           C+   L EA +  + M + G+ 
Sbjct: 590 CNESKLDEACQLYETMIDNGLS 611



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 50/232 (21%), Positives = 100/232 (43%), Gaps = 16/232 (6%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRV- 195
           T+  +   +  A     A    D+M + G   ++F  N+++  +C+ G+  +A++ LR  
Sbjct: 406 TYTCLIDGHCKAGNFGRAYELMDLMGKEGFTPNIFTYNAIIDGLCKKGRFPEAYKLLRRG 465

Query: 196 VDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
           +   +  D  TY IL+  + ++ D   A   F  M  +VG  PD +  Y+  + T  +  
Sbjct: 466 LKSGLHADKVTYTILISEFCRQTDNKQALAIFSRM-FKVGLQPD-MHTYNVLIATFCR-- 521

Query: 256 DGIYETVNSLKRMMERGCNPGM-----TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFR 310
               + V   +++ E     G+     T+  +    C  G      +F     +   G +
Sbjct: 522 ---QKKVEESEKLFEEAVGLGLLPTKETYTSMICGYCRDGHISSAIKFFHK--MRDYGCK 576

Query: 311 PDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFP-DIQTYNILFEFLVKG 361
           PD+  Y  +IS  C  ++   A +L + M+ NG  P ++    + +E+  +G
Sbjct: 577 PDSITYGALISGLCNESKLDEACQLYETMIDNGLSPCEVTRVTLAYEYCKQG 628



 Score = 40.4 bits (93), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 72/162 (44%), Gaps = 14/162 (8%)

Query: 223 AKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC--DGIYETVNSLKRMMERGC---NPGM 277
           A+K F EM+     D   VP   SY + ++  C    I +    LK M+ERG    N   
Sbjct: 212 AEKVFDEML-----DRAVVPDSTSYKLMVVGYCRMGRISDVDRWLKDMIERGYAVDNATC 266

Query: 278 TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLD 337
           T     F E    +      F +     ++G  P+   ++ +I+  C       A ++L+
Sbjct: 267 TLMISTFSE----KGFVNRAFWYFKKWVQMGLNPNLINFSSLINGLCKIGSIKQAFEMLE 322

Query: 338 EMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNEN 379
           EMV  G  P++ T+  L + L K     +A  LF ++V+++N
Sbjct: 323 EMVRKGWKPNVYTHTALIDGLCKKGWTEKAFRLFLKLVRSDN 364


>gi|168040538|ref|XP_001772751.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162675976|gb|EDQ62465.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 526

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 88/367 (23%), Positives = 152/367 (41%), Gaps = 41/367 (11%)

Query: 104 WNLVVDLLGKNCLFDAMWDAIKSMKKE-NVLSLATFASVFSSYVVADRVKDAITTFDVME 162
           ++ ++ LLG    FD +W  +  MK++ + ++   F  V  SYV A++++D++ TF  M+
Sbjct: 2   YSTMLRLLGDARRFDYLWALLDDMKRDGHRVTPTIFLGVIRSYVKANQIEDSLKTFHAMD 61

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVD-GRIKPDNDTYAILLEGWEKERDVA 221
           +Y CK      NS++  +   G  + A +  R ++     PD  TY ++++   K   + 
Sbjct: 62  KYDCKPTTLVYNSMIDILRTSGDYVQAEKLFRSMNPSSCAPDTITYTMMIDCMGKAGHIQ 121

Query: 222 NAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFK 281
            A   F EM   +G+   NV  Y S + +L K    I E  N L  M   GCNP    + 
Sbjct: 122 AAFDLFQEMH-RMGYKA-NVITYSSLIRSLCKA-GRISEACNLLSGMRINGCNPNDVTYN 178

Query: 282 LAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVY 341
                              G +VG  G        +++ S Y              EM  
Sbjct: 179 -------------------GLIVGLGG----AGQADLVCSYY-------------KEMKS 202

Query: 342 NGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYV 401
            G  P++ T  ++   LV+  KL EA  LF       +  + +  ++ V     S+   V
Sbjct: 203 FGLIPNLPTQAVVISSLVRIGKLSEAHSLFQTAALKSSTFDFDVMKSVVGSLCKSNRCEV 262

Query: 402 AIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQ 461
             KF++   ++     S   ++L+  L  + M+ EA+         G+     AL+ L  
Sbjct: 263 GFKFFQDAKKSGYVPSSGACSVLIYSLSKVGMVAEALCVYGESTRGGVSPDLMALNALTN 322

Query: 462 ILIKARK 468
            L+K  K
Sbjct: 323 SLVKEEK 329



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 69/315 (21%), Positives = 129/315 (40%), Gaps = 14/315 (4%)

Query: 104 WNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVME 162
           +N ++  LG     D +    K MK   ++ +L T A V SS V   ++ +A + F    
Sbjct: 177 YNGLIVGLGGAGQADLVCSYYKEMKSFGLIPNLPTQAVVISSLVRIGKLSEAHSLFQTAA 236

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV--DGRIKPDNDTYAILLEGWEKERDV 220
                 D   + S++ ++C+  +    ++F +     G + P +   ++L+    K   V
Sbjct: 237 LKSSTFDFDVMKSVVGSLCKSNRCEVGFKFFQDAKKSGYV-PSSGACSVLIYSLSKVGMV 295

Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMM--ERGCNPGMT 278
           A A   +GE     G  PD + A ++   +L+K  +   E    + R +   R  +    
Sbjct: 296 AEALCVYGEST-RGGVSPD-LMALNALTNSLVK--EEKLEAAIDVVRFINKHRIGDDAYA 351

Query: 279 FFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDE 338
             +L    C T +     E +    + + GF P+ H+YN +I     +     A+K  + 
Sbjct: 352 HERLVDLLCKTHR----FEDVISQELPKQGFAPNVHLYNKLIYQLGEAGRINDALKTFER 407

Query: 339 MVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDD 398
           M     +PD +TYN++   L    K+  A  LF +M +     N +     V   + +  
Sbjct: 408 MCSESCYPDTRTYNVVINLLGGVGKVDLAHQLFEQMKEKGCKPNLQTYNIMVGHLVRAGR 467

Query: 399 PYVAIKFWKYMIENH 413
             +  K  + M+ NH
Sbjct: 468 YQLGPKLCREMVANH 482



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 77/345 (22%), Positives = 137/345 (39%), Gaps = 78/345 (22%)

Query: 45  IIANTPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAW 104
           +I N P+   + V+  +L+R+         K S +H       F+ +A     K S + +
Sbjct: 205 LIPNLPT---QAVVISSLVRIG--------KLSEAH-----SLFQTAAL----KSSTFDF 244

Query: 105 NLVVDLLGKNCL-------FDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITT 157
           +++  ++G  C        F    DA KS     V S    + +  S      V +A+  
Sbjct: 245 DVMKSVVGSLCKSNRCEVGFKFFQDAKKS---GYVPSSGACSVLIYSLSKVGMVAEALCV 301

Query: 158 FDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKE 217
           +    + G   D+ ALN+L +++ ++ K   A   +R ++ + +  +D YA      E+ 
Sbjct: 302 YGESTRGGVSPDLMALNALTNSLVKEEKLEAAIDVVRFIN-KHRIGDDAYA-----HERL 355

Query: 218 RDVANAKKTFGEMVIE----VGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGC 273
            D+      F +++ +     G+ P NV  Y+  +  L     G    +N   +  ER C
Sbjct: 356 VDLLCKTHRFEDVISQELPKQGFAP-NVHLYNKLIYQL-----GEAGRINDALKTFERMC 409

Query: 274 NPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAM 333
           +          E C                       PDT  YN++I+L     +   A 
Sbjct: 410 S----------ESCY----------------------PDTRTYNVVINLLGGVGKVDLAH 437

Query: 334 KLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNE 378
           +L ++M   G  P++QTYNI+   LV+  +      L  EMV N 
Sbjct: 438 QLFEQMKEKGCKPNLQTYNIMVGHLVRAGRYQLGPKLCREMVANH 482


>gi|147787958|emb|CAN73849.1| hypothetical protein VITISV_021776 [Vitis vinifera]
          Length = 671

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 94/421 (22%), Positives = 173/421 (41%), Gaps = 49/421 (11%)

Query: 91  SAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVAD 149
           S  Q N + + +A+N ++D L K+      ++    M  + +   + T+ S+  +     
Sbjct: 191 SMVQKNCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLC 250

Query: 150 RVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYA 208
             K   T  + M       DV + N+++ A+C++GK  +A   + +++   ++P+  TY 
Sbjct: 251 EWKHVATLLNEMVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYT 310

Query: 209 ILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYL--------------ITLLKG 254
            L++G     ++  A K F  MV + G  P NV +Y++ +               T L  
Sbjct: 311 ALMDGHCLLSEMDEAVKVFDTMVCK-GCMP-NVISYNTLINGYCKIQRIDKAIHYTXLMD 368

Query: 255 CDGIY----ETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFR 310
               Y    E V     M+ +GC P +  +          Q +  A +++G M  R    
Sbjct: 369 XXCCYLNMDEAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMC-RQELI 427

Query: 311 PDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGL 370
           PDT  Y+ +I   C+      A+ L  EMV     P++ TY IL ++L K R L EA  L
Sbjct: 428 PDTVTYSTLIHGLCHVERLQDAIALFHEMVACSQIPNLVTYRILLDYLCKNRYLAEAMAL 487

Query: 371 FNEM--------VKNENVLNHENCRA-----AVRVYMDSDDPYVAIKFWKYMIENHCSDL 417
              +        ++  N+     CRA     A  ++ +     +    W Y I       
Sbjct: 488 LKAIEGSNLDPDIQVNNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVWTYSI------- 540

Query: 418 SETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLK 477
                 ++ GLC   +L EA K  + M E G  +     + + +  ++  + +   +LL+
Sbjct: 541 ------MINGLCRRGLLDEASKLFREMDENGCTLNGCIYNTITRGFLRNNETSRAIQLLQ 594

Query: 478 K 478
           +
Sbjct: 595 E 595



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 82/349 (23%), Positives = 144/349 (41%), Gaps = 25/349 (7%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVM 161
           ++N VVD L K        D +  M +  V  ++ T+ ++   + +   + +A+  FD M
Sbjct: 273 SFNTVVDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAVKVFDTM 332

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRI--------------------K 201
              GC  +V + N+L++  C+  +   A  +  ++D                        
Sbjct: 333 VCKGCMPNVISYNTLINGYCKIQRIDKAIHYTXLMDXXCCYLNMDEAVKVFDTMVCKGCM 392

Query: 202 PDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYET 261
           P+  +Y  L+ G+ K + +  A   FGEM  +    PD V    S LI  L   + + + 
Sbjct: 393 PNVISYNTLINGYCKIQRIDKAMYLFGEMCRQ-ELIPDTVTY--STLIHGLCHVERLQDA 449

Query: 262 VNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMIS 321
           +     M+     P +  +++  +     + L  A  +  A+ G     PD  + N+ I 
Sbjct: 450 IALFHEMVACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGS-NLDPDIQVNNIAID 508

Query: 322 LYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVL 381
             C + E  AA  L   +   G  PD+ TY+I+   L +   L EAS LF EM +N   L
Sbjct: 509 GMCRAGELEAARDLFSNLSSKGLQPDVWTYSIMINGLCRRGLLDEASKLFREMDENGCTL 568

Query: 382 NHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCD 430
           N        R ++ +++   AI+  + M+    S  + T  L V  L D
Sbjct: 569 NGCIYNTITRGFLRNNETSRAIQLLQEMVARGFSADASTMTLFVKMLSD 617



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 71/304 (23%), Positives = 134/304 (44%), Gaps = 21/304 (6%)

Query: 136 ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-R 194
           ATF ++     V  ++ +A+  FD M   G + DV    +L++ +C+ G T  A + L  
Sbjct: 132 ATFTTLIRGICVEGKIGEALHLFDKMIGEGFRPDVVTYGTLINGLCKVGNTSAAIRLLGS 191

Query: 195 VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG 254
           +V    +P+   Y  +++   K+R V  A   F EMV + G  PD +  Y+S +  L   
Sbjct: 192 MVQKNCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTK-GISPD-IFTYNSLIHALCNL 249

Query: 255 CDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTH 314
           C+  +     L  M++    P +  F    +       +  A  +   M+ R G  P+  
Sbjct: 250 CEWKH-VATLLNEMVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQR-GVEPNVV 307

Query: 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
            Y  ++  +C  +E   A+K+ D MV  G  P++ +YN L     K +++ +A       
Sbjct: 308 TYTALMDGHCLLSEMDEAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRIDKA------- 360

Query: 375 VKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHML 434
           +    +++   C      Y++ D+   A+K +  M+   C     + N L+ G C +  +
Sbjct: 361 IHYTXLMDXXCC------YLNMDE---AVKVFDTMVCKGCMPNVISYNTLINGYCKIQRI 411

Query: 435 PEAV 438
            +A+
Sbjct: 412 DKAM 415



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 68/288 (23%), Positives = 130/288 (45%), Gaps = 11/288 (3%)

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERD 219
           M+ +G   +++ L+ L+++ C   +   A+  L +++    +PD  T+  L+ G   E  
Sbjct: 87  MDSFGIPPNIYTLHILINSFCHLNRVGFAFSVLAKILKLGHQPDTATFTTLIRGICVEGK 146

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTF 279
           +  A   F +M+ E G+ PD V  Y + LI  L         +  L  M+++ C P +  
Sbjct: 147 IGEALHLFDKMIGE-GFRPD-VVTYGT-LINGLCKVGNTSAAIRLLGSMVQKNCQPNVFA 203

Query: 280 FKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEM 339
           +    +     + +  A  ++  MV + G  PD   YN +I   C   E      LL+EM
Sbjct: 204 YNTIIDSLCKDRQVTEAFNLFSEMVTK-GISPDIFTYNSLIHALCNLCEWKHVATLLNEM 262

Query: 340 VYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKN---ENVLNHENCRAAVRVYMDS 396
           V +   PD+ ++N + + L K  K+ EA  + ++M++     NV+ +        +  + 
Sbjct: 263 VDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEM 322

Query: 397 DDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGM 444
           D+   A+K +  M+   C     + N L+ G C +  + +A+ Y   M
Sbjct: 323 DE---AVKVFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAIHYTXLM 367


>gi|449453031|ref|XP_004144262.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g26500-like [Cucumis sativus]
          Length = 505

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 93/448 (20%), Positives = 187/448 (41%), Gaps = 40/448 (8%)

Query: 24  STFASHLDVPNLPPTIKTLCEII---ANTPSPTVEDVLDKTLIRVSQETVEQVLKFSYSH 80
           ST A ++  P     ++ +C ++    N+P   +   L      +S E   QV       
Sbjct: 32  STAADNIPQPIDSTHLRRVCTVLYQQQNSPDLKLHTKLLACNFNLSHEFFLQVCNTFPLS 91

Query: 81  PGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFAS 140
             P  +FF+++    N  H+  ++N ++D++GK+   D +W  I+ M +  +++  TF  
Sbjct: 92  WRPVYRFFQFTETHPNFTHTAVSFNKLIDVVGKSRNIDLLWGLIQEMGRRRLVNDKTFVV 151

Query: 141 VFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRV-VDGR 199
              +   A  +K  +  F +M  YG  + +  LN ++  +C   K +D  +FL + ++  
Sbjct: 152 ALRTLATARELKKCVEFFHLMNGYGFCYSLVTLNRVVEKLC-GCKLVDEAKFLVMKLNEW 210

Query: 200 IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIY 259
           IK D  TY +L++G+    D+  A K +  MV E G++P+ + A +  +  L K  + + 
Sbjct: 211 IKADGVTYKLLIKGFCNVGDLIEASKMWNLMVDE-GFEPE-MEAVEEMMNVLFK-TNKLD 267

Query: 260 ETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMM 319
           E +   + +     N  +          L  +   G  FI    + + G   D  +++ +
Sbjct: 268 EALKLFQALRSDRMNDLIPSTYSLVIRWLCNKGKVGQAFIVFDEMHKRGLEVDNSVHSSL 327

Query: 320 ISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNEN 379
           I           A  ++  +      PD+  Y+   + L+K ++  EA+ +F EM++   
Sbjct: 328 IYGLLARGRRREAYNIMRRI----ENPDLDVYHAFIKGLLKLKRANEATQVFREMIE--- 380

Query: 380 VLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETG--------NLLVAGLCDM 431
                 C   +  Y+              +++ H       G        ++ V GL   
Sbjct: 381 ----RGCEPIMHTYI-------------MLLQGHLGKRGRKGSDPLVNFDSIFVGGLVKN 423

Query: 432 HMLPEAVKYAKGMAEKGIQVTPFALSKL 459
               EA KY + + ++G++V  F  +K 
Sbjct: 424 GKSLEATKYVERLMKRGLEVPRFDYNKF 451


>gi|115471647|ref|NP_001059422.1| Os07g0300200 [Oryza sativa Japonica Group]
 gi|34394343|dbj|BAC84898.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|50509027|dbj|BAD31989.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|113610958|dbj|BAF21336.1| Os07g0300200 [Oryza sativa Japonica Group]
          Length = 1013

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 90/345 (26%), Positives = 145/345 (42%), Gaps = 9/345 (2%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-V 195
           T++++  +Y        A      M + GC  +    N L++ +CR G   +A+ F + +
Sbjct: 246 TYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDM 305

Query: 196 VDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
            D  + PD  TY  L+ G  K R    AK    EM         NV  Y + +   ++  
Sbjct: 306 EDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEM--SCAELKPNVVVYANLIDGFMREG 363

Query: 256 DGIYETVNSLKRMMERGCNPG-MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTH 314
           +   E    +K M+  G  P  +T+  L    C  GQ  R A  +   MV R   RPDT 
Sbjct: 364 NA-DEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDR-ASLLLKQMV-RDSHRPDTI 420

Query: 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
            YN++I  +   +    A +LL EM   G  P++ TY+I+   L +  +  +AS L  EM
Sbjct: 421 TYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEM 480

Query: 375 VKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIE-NHCSDLSETGNLLVAGLCDMHM 433
                  N       +  Y    +  +A + +  M + N   DL    N L+ GL  +  
Sbjct: 481 TTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDL-YCYNSLIFGLSKVGR 539

Query: 434 LPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKK 478
           + E+ KY   M E+G+    F  S L    +K       E+L+++
Sbjct: 540 VEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQR 584



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 72/299 (24%), Positives = 138/299 (46%), Gaps = 8/299 (2%)

Query: 88  FRWSAYQLNDKHSP--YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLA-TFASVFSS 144
           FR  +   N   SP  Y +++++  L ++   +   D ++ M  + +   A  +A + S 
Sbjct: 439 FRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISG 498

Query: 145 YVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPD 203
           Y     V  A   FD M +     D++  NSL+  + + G+  ++ ++   +  R + P+
Sbjct: 499 YCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPN 558

Query: 204 NDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVN 263
             TY+ L+ G+ K  D+ +A++    M ++ G  P++V  Y   L +  K  D I +  +
Sbjct: 559 EFTYSGLIHGYLKNGDLESAEQLVQRM-LDTGLKPNDV-IYIDLLESYFKS-DDIEKVSS 615

Query: 264 SLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLY 323
           + K M+++G       + +      +  N+  A  +    + + G  PD H+Y+ +IS  
Sbjct: 616 TFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSG-IEKNGSVPDVHVYSSLISGL 674

Query: 324 CYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLN 382
           C + +   A  +LDEM   G  P+I  YN L + L K   +  A  +FN ++    V N
Sbjct: 675 CKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPN 733



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 94/415 (22%), Positives = 157/415 (37%), Gaps = 54/415 (13%)

Query: 80  HPGPAVKFFRWSAYQLN-DKHSPYAWNLVVDLLGKNCLFD------------------AM 120
           HP   + FF WS+ QL     +P A+  +   L    LF+                   +
Sbjct: 100 HPKLLLDFFYWSSPQLAPSAPAPDAFAHLAMSLCAGSLFNLANGLLIKMIRAYPSPPVVL 159

Query: 121 WDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAI 180
               +++      S A    +  +Y  + RV+DA     +M   G    +   N+LL  +
Sbjct: 160 ASIHRALSDSGHRSPAVLDVLVDTYKKSGRVQDAAEVVLMMRDRGMAPSIRCCNALLKDL 219

Query: 181 CRDGKTIDAWQFLR-VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPD 239
            R       W+    +V   I PD  TY+ L+E + K R+   AKK   EM  E G   +
Sbjct: 220 LRADAMALLWKVREFMVGAGISPDVYTYSTLIEAYCKVREFDTAKKVLVEMR-ERGCGLN 278

Query: 240 NVPAYDSYLITLLKGCDGIYETVNSLKRMMER-GCNP-GMTFFKLAFEECLTGQNLRGAE 297
            V  Y+  +  L +   G  E     K+ ME  G  P G T+  L    C + ++     
Sbjct: 279 TV-TYNVLIAGLCR--SGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKA 335

Query: 298 FIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEF 357
            +       +  +P+  +Y  +I  +        A K++ EMV  G  P+  TY+ L   
Sbjct: 336 LLDEMSCAEL--KPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRG 393

Query: 358 LVKGRKLWEASGLFNEMVKN-------------ENVLNHENCRAAVRVYMDSDDPYVAIK 404
           L K  ++  AS L  +MV++             E    H + + A R+  + ++  ++  
Sbjct: 394 LCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPN 453

Query: 405 FWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKL 459
            + Y I  H             GLC      +A    + M  KG++   F  + L
Sbjct: 454 VYTYSIMIH-------------GLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPL 495



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 62/283 (21%), Positives = 108/283 (38%), Gaps = 37/283 (13%)

Query: 127 MKKENVL-SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGK 185
           M K NVL  L  + S+        RV+++   F  M++ G   + F  + L+    ++G 
Sbjct: 515 MTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGD 574

Query: 186 TIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMV------------- 231
              A Q + R++D  +KP++  Y  LLE + K  D+     TF  M+             
Sbjct: 575 LESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGI 634

Query: 232 --------------------IEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMER 271
                               IE      +V  Y S +  L K  D   +    L  M ++
Sbjct: 635 LIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADR-EKAFGILDEMSKK 693

Query: 272 GCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGA 331
           G +P +  +    +      ++  A  ++ +++ + G  P+   Y  +I   C   +   
Sbjct: 694 GVDPNIVCYNALIDGLCKSGDISYARNVFNSILAK-GLVPNCVTYTSLIDGSCKVGDISN 752

Query: 332 AMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
           A  L +EM+  G  PD   Y++L         L +A  L  EM
Sbjct: 753 AFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEM 795



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 70/325 (21%), Positives = 125/325 (38%), Gaps = 44/325 (13%)

Query: 154 AITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLE 212
           A      +E+ G   DV   +SL+S +C+      A+  L  +  + + P+   Y  L++
Sbjct: 648 AFRVLSGIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALID 707

Query: 213 GWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSL---KRMM 269
           G  K  D++ A+  F  ++ + G  P N   Y S    L+ G   + +  N+      M+
Sbjct: 708 GLCKSGDISYARNVFNSILAK-GLVP-NCVTYTS----LIDGSCKVGDISNAFYLYNEML 761

Query: 270 ERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNET 329
             G  P    + +    C +  +L  A F+   M  R         +N ++  +C   + 
Sbjct: 762 ATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLR--GHASISSFNNLVDGFCKRGKM 819

Query: 330 GAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAA 389
              +KLL  ++  G  P+  T   +   L +  KL E   +F E+   +   +    R  
Sbjct: 820 QETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVHTIFVEL---QQKTSESAARHF 876

Query: 390 VRVYMDS-DDPYVAIKFWKYMIENHCSDLSETGNL------------------------L 424
             ++MD  +   + +     MI +HC +    GNL                        +
Sbjct: 877 SSLFMDMINQGKIPLDVVDDMIRDHCKE----GNLDKALMLRDVIVAKSAPMGCSSYLAI 932

Query: 425 VAGLCDMHMLPEAVKYAKGMAEKGI 449
           V  LC    L EA+   K M ++GI
Sbjct: 933 VDNLCRKGKLSEALNLLKEMDKRGI 957



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 62/254 (24%), Positives = 109/254 (42%), Gaps = 13/254 (5%)

Query: 138 FASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVD 197
           +  +  SY  +D ++   +TF  M   G   D      L+  +   G    A++ L  ++
Sbjct: 597 YIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIE 656

Query: 198 --GRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
             G + PD   Y+ L+ G  K  D   A     EM  + G DP N+  Y++ +  L K  
Sbjct: 657 KNGSV-PDVHVYSSLISGLCKTADREKAFGILDEMS-KKGVDP-NIVCYNALIDGLCKSG 713

Query: 256 DGIYETVNSLKRMMERGCNPG-MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTH 314
           D  Y   N    ++ +G  P  +T+  L    C  G ++  A +++  M+   G  PD  
Sbjct: 714 DISYAR-NVFNSILAKGLVPNCVTYTSLIDGSCKVG-DISNAFYLYNEMLA-TGITPDAF 770

Query: 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
           +Y+++ +    + +   AM L++EM   G    I ++N L +   K  K+ E   L + +
Sbjct: 771 VYSVLTTGCSSAGDLEQAMFLIEEMFLRG-HASISSFNNLVDGFCKRGKMQETLKLLHVI 829

Query: 375 VKN---ENVLNHEN 385
           +      N L  EN
Sbjct: 830 MGRGLVPNALTIEN 843


>gi|15222409|ref|NP_176529.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75205330|sp|Q9SH26.1|PP102_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63400
 gi|6633845|gb|AAF19704.1|AC008047_11 F2K11.22 [Arabidopsis thaliana]
 gi|332195974|gb|AEE34095.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 577

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 78/333 (23%), Positives = 147/333 (44%), Gaps = 5/333 (1%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           TF ++     + ++  +A+   D M Q GC+ ++     +++ +C+ G    A+  L  +
Sbjct: 192 TFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKM 251

Query: 197 DG-RIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
           +  +I+ +   Y+ +++   K R   +A   F EM  + G  P NV  Y S LI+ L   
Sbjct: 252 EAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENK-GVRP-NVITYSS-LISCLCNY 308

Query: 256 DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHM 315
           +   +    L  M+ER  NP +  F    +  +    L  AE ++  M+ R    PD   
Sbjct: 309 ERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKR-SIDPDIFT 367

Query: 316 YNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
           Y+ +I+ +C  +    A  + + M+    FP++ TYN L     K +++ E   LF EM 
Sbjct: 368 YSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMS 427

Query: 376 KNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLP 435
           +   V N       +  +  + D   A   +K M+ +       T N L+ GLC    L 
Sbjct: 428 QRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLE 487

Query: 436 EAVKYAKGMAEKGIQVTPFALSKLKQILIKARK 468
           +A+   + +    ++ T +  + + + + KA K
Sbjct: 488 KAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGK 520



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 70/297 (23%), Positives = 135/297 (45%), Gaps = 14/297 (4%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASVFSSYVVADRVKDAITTFDVM 161
            + +VV+ L K    D  ++ +  M+   +  ++  +++V  S        DA+  F  M
Sbjct: 227 TYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEM 286

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYAILLEGWEKERDV 220
           E  G + +V   +SL+S +C   +  DA + L  +++ +I P+  T+  L++ + KE  +
Sbjct: 287 ENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKL 346

Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFF 280
             A+K + EM I+   DPD +  Y S LI      D + E  +  + M+ + C P +  +
Sbjct: 347 VEAEKLYDEM-IKRSIDPD-IFTYSS-LINGFCMHDRLDEAKHMFELMISKDCFPNVVTY 403

Query: 281 KLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMV 340
                     + +     ++  M  R G   +T  Y  +I  +  + +   A  +  +MV
Sbjct: 404 NTLINGFCKAKRIDEGVELFREMSQR-GLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMV 462

Query: 341 YNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNE--------NVLNHENCRAA 389
            +G  P+I TYN L + L K  KL +A  +F  + +++        N++    C+A 
Sbjct: 463 SDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAG 519



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 85/391 (21%), Positives = 146/391 (37%), Gaps = 79/391 (20%)

Query: 150 RVKDAITTFDVMEQYGCKHDVFALNSLLSAI----------------------------- 180
           ++ DAI  F  M +      +F  N LLSAI                             
Sbjct: 65  KLDDAIGLFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYN 124

Query: 181 ------CRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIE 233
                 CR  +   A   L +++    +P   T + LL G+   + +++A     +MV E
Sbjct: 125 ILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMV-E 183

Query: 234 VGWDPDNVPAYDSYLITLLKGC---DGIYETVNSLKRMMERGCNPGMTFF---------- 280
           +G+ PD +        TL+ G    +   E V  + RM++RGC P +  +          
Sbjct: 184 MGYRPDTIT-----FTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKR 238

Query: 281 ---KLAFE--ECLTGQNLRGAEFIWGAMVGRI-------------------GFRPDTHMY 316
               LAF     +    +     I+  ++  +                   G RP+   Y
Sbjct: 239 GDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITY 298

Query: 317 NMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK 376
           + +IS  C       A +LL +M+     P++ T+N L +  VK  KL EA  L++EM+K
Sbjct: 299 SSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIK 358

Query: 377 NENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPE 436
                +     + +  +   D    A   ++ MI   C     T N L+ G C    + E
Sbjct: 359 RSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDE 418

Query: 437 AVKYAKGMAEKGIQVTPFALSKLKQILIKAR 467
            V+  + M+++G+       + L     +AR
Sbjct: 419 GVELFREMSQRGLVGNTVTYTTLIHGFFQAR 449



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 101/217 (46%), Gaps = 9/217 (4%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           T++S+ + + + DR+ +A   F++M    C  +V   N+L++  C+  +  +  +  R +
Sbjct: 367 TYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREM 426

Query: 197 DGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
             R +  +  TY  L+ G+ + RD  NA+  F +MV + G  P N+  Y++ L  L K  
Sbjct: 427 SQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSD-GVHP-NIMTYNTLLDGLCK-- 482

Query: 256 DGIYETVNSLKRMMERG-CNPGMTFFKLAFEE-CLTGQNLRGAEFIWGAMVGRIGFRPDT 313
           +G  E    +   ++R    P +  + +  E  C  G+   G +      +   G +PD 
Sbjct: 483 NGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLK--GVKPDV 540

Query: 314 HMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQT 350
            +YN MIS +C       A  L  +M  +G  PD  T
Sbjct: 541 IIYNTMISGFCRKGLKEEADALFRKMREDGPLPDSGT 577



 Score = 45.8 bits (107), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 37/169 (21%), Positives = 69/169 (40%)

Query: 301 GAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVK 360
           G  + R+G   + + YN++I+ +C  ++   A+ LL +M+  G  P I T + L      
Sbjct: 108 GEKMQRLGISHNLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCH 167

Query: 361 GRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSET 420
           G+++ +A  L ++MV+     +       +      +    A+     M++  C     T
Sbjct: 168 GKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVT 227

Query: 421 GNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKE 469
             ++V GLC    +  A      M    I+      S +   L K R E
Sbjct: 228 YGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHE 276


>gi|242084242|ref|XP_002442546.1| hypothetical protein SORBIDRAFT_08g021630 [Sorghum bicolor]
 gi|241943239|gb|EES16384.1| hypothetical protein SORBIDRAFT_08g021630 [Sorghum bicolor]
          Length = 735

 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 87/399 (21%), Positives = 171/399 (42%), Gaps = 8/399 (2%)

Query: 86  KFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASVFSS 144
           +FFRW+  Q   +H+P  ++ ++ LL +  L D     ++ M +  +      FA +  S
Sbjct: 111 EFFRWADRQWKYRHAPEVFDEMLVLLSRTRLHDPARRVMRLMIRRGMPRGTRQFAHLMLS 170

Query: 145 YVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPD 203
           Y  A +++ A+    +M++ GC  D+   N  ++ +   G+   A +F  R+    + PD
Sbjct: 171 YSRAGKLRSAMRVLQLMQKDGCAPDICICNMAVNVLVVAGRIDKALEFAERMRRVGVDPD 230

Query: 204 NDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVN 263
             TY  L++G    R + +A +    M ++ G  PD +  +   +++ L     + +  N
Sbjct: 231 VVTYNCLIKGLCGARRIVDALEMISSM-LQNGCLPDKISYFT--VMSFLCKEKRVADVQN 287

Query: 264 SLKRMMERGCNP-GMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISL 322
            L+RM + G  P  +T+  L       G       F+  +   R  FR D   Y+  +  
Sbjct: 288 LLERMSDAGIFPDQVTYNMLIHGLAKHGHADEALSFLRESEGKR--FRVDEVGYSATVHS 345

Query: 323 YCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLN 382
           +C +     A +++ EM+  G  PD+ TY+ + +   +  +L +A  +   M KN    N
Sbjct: 346 FCLNGRMAEAKEIIGEMISKGCRPDVVTYSAVVDGFCRIGELDQARKMMKHMYKNGCKPN 405

Query: 383 HENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAK 442
                A +           A +      E   +  + T ++++ G      L E+     
Sbjct: 406 TVTHTALLNGLCKVGKSSEAWELLNKSEEEWWTPSAITYSVVMHGFRREGKLKESCDVVM 465

Query: 443 GMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKCKA 481
            M +KG   T   ++ L   L   RK A  ++ +++C++
Sbjct: 466 QMLQKGFFPTTVEINLLIHALCNERKPADAKDFMEQCQS 504



 Score = 38.9 bits (89), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 64/309 (20%), Positives = 127/309 (41%), Gaps = 32/309 (10%)

Query: 138 FASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VV 196
           +++   S+ +  R+ +A      M   GC+ DV   ++++   CR G+   A + ++ + 
Sbjct: 339 YSATVHSFCLNGRMAEAKEIIGEMISKGCRPDVVTYSAVVDGFCRIGELDQARKMMKHMY 398

Query: 197 DGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD 256
               KP+  T+  LL G  K    + A +   +   E  W P  +    S ++   +   
Sbjct: 399 KNGCKPNTVTHTALLNGLCKVGKSSEAWELLNKSE-EEWWTPSAITY--SVVMHGFRREG 455

Query: 257 GIYETVNSLKRMMERGCNPGMTFFKLAFEE-CLTGQNLRGAEFIW-----GAMVGRIGFR 310
            + E+ + + +M+++G  P      L     C   +     +F+      G  +  + F 
Sbjct: 456 KLKESCDVVMQMLQKGFFPTTVEINLLIHALCNERKPADAKDFMEQCQSKGCFINVVNFT 515

Query: 311 PDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGL 370
              H ++          +  +A+ LLD+M      PD+ TY ++ + L +  K+ EA+ L
Sbjct: 516 TVIHGFS-------RQGDLESALSLLDDMYLTNRHPDVVTYTVVVDALGRKGKMKEATSL 568

Query: 371 FNEMVKNE--------NVLNHENC-RAAVRVYMDSDDPYVAIK----FWKYMIENHCS-- 415
             +M+             + H  C + AV   ++  D  +A +     +  +IE  C+  
Sbjct: 569 VEKMLNRGLHPTPVTYRTVIHRYCEKGAVEDLLNLLDKMLAKEGFSSAYNQVIEKLCAFG 628

Query: 416 DLSETGNLL 424
            LSE  NLL
Sbjct: 629 KLSEANNLL 637


>gi|302785473|ref|XP_002974508.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
 gi|300158106|gb|EFJ24730.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
          Length = 567

 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 94/410 (22%), Positives = 161/410 (39%), Gaps = 56/410 (13%)

Query: 117 FDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNS 175
           F   +  +  M K + L ++ T+ ++      A+R +DA+   D M   GC  +++  N 
Sbjct: 93  FGQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAERTRDAVKLLDEMRDKGCSPNIYTYNV 152

Query: 176 LLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEV 234
           ++  +C + K  +A + L  +  R   PD  TY   ++G  K   V  A+K    M +  
Sbjct: 153 IVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARMPVT- 211

Query: 235 GWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLR 294
              PD V +Y + +  L K  D +      L  M  RGC P +  +    +    G  + 
Sbjct: 212 ---PD-VVSYTTVINGLCKSGD-LDSASRMLDHMSNRGCTPDVVTYSSLIDGFCKGGEVE 266

Query: 295 GAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNIL 354
            A  +  +M+ ++G RP+   YN ++         G A  +L EM   G  PD+ +YN  
Sbjct: 267 RAMGLLDSML-KLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNAC 325

Query: 355 FEFLVKGRKLWEASGLFNEMVKN------------------------------------- 377
            + L K  ++ +A  +F+ MV+                                      
Sbjct: 326 IDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLIVDILLYTVLLDGLCKGGRFDEACA 385

Query: 378 --ENVLNHENCRAAVRVYMDSDDPYV-------AIKFWKYMIENHCSDLSETGNLLVAGL 428
               VL+ + C   V  Y    D +        A++  K M+E +C ++  T N+LV GL
Sbjct: 386 LFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDKALQIHKQMLEKNCCNVV-TWNILVHGL 444

Query: 429 CDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKK 478
           C    L +A      M ++G          L   + K  K A   EL ++
Sbjct: 445 CVDDRLSDAETMLLTMVDEGFIPDFVTYGTLVDAMCKCGKSAAALELFEE 494



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 74/296 (25%), Positives = 126/296 (42%), Gaps = 8/296 (2%)

Query: 165 GCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDVANA 223
           G +H+VF  N LL  + R+ +   A   F  ++D   +PD  T+AILL G  +   +  A
Sbjct: 2   GYEHNVFTYNKLLLQLTREHRHDKASAVFQEMIDKSCQPDAFTFAILLRGLCRSNQLEKA 61

Query: 224 KKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLA 283
           +K  G M  E+G  PD+  A  + LI+         +    L  M++  C P +  +   
Sbjct: 62  RKLLGRMK-EMGCVPDD--AIYNALISGYSKAKDFGQAFKFLAEMVKNHCLPTVVTYTNI 118

Query: 284 FEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNG 343
            +     +  R A  +   M  + G  P+ + YN+++   C   +   A K+L+EM   G
Sbjct: 119 VDGLCKAERTRDAVKLLDEMRDK-GCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRG 177

Query: 344 AFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAI 403
            FPD+ TYN   + L K  ++ EA      M    +V+++      +     S D   A 
Sbjct: 178 YFPDVVTYNSFIKGLCKCDRVDEARKFLARMPVTPDVVSYTT---VINGLCKSGDLDSAS 234

Query: 404 KFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKL 459
           +   +M    C+    T + L+ G C    +  A+     M + G +    A + L
Sbjct: 235 RMLDHMSNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSL 290



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 82/321 (25%), Positives = 131/321 (40%), Gaps = 51/321 (15%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVM 161
           ++  V++ L K+   D+    +  M        + T++S+   +     V+ A+   D M
Sbjct: 216 SYTTVINGLCKSGDLDSASRMLDHMSNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSM 275

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDV 220
            + GC+ ++ A NSLL A+ R G    A   L  ++ R   PD  +Y   ++G  K   V
Sbjct: 276 LKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAERV 335

Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLI------TLLKG-CDG---------------- 257
             AK  F  MV E G  P N  +Y   ++       LL G C G                
Sbjct: 336 KKAKAVFDRMV-ERGCTP-NASSYSMLIVDILLYTVLLDGLCKGGRFDEACALFSKVLDE 393

Query: 258 ----------------------IYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRG 295
                                 I + +   K+M+E+ C   +T+  L    C+  + L  
Sbjct: 394 KICEPDVFFYNVMLDSHCKRRQIDKALQIHKQMLEKNCCNVVTWNILVHGLCVDDR-LSD 452

Query: 296 AEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILF 355
           AE +   MV   GF PD   Y  ++   C   ++ AA++L +E V  G  PD+ TY+ L 
Sbjct: 453 AETMLLTMVDE-GFIPDFVTYGTLVDAMCKCGKSAAALELFEEAVKGGCVPDVVTYSALI 511

Query: 356 EFLVKGRKLWEASGLFNEMVK 376
             LV      EA  LF ++V+
Sbjct: 512 TGLVHENMAEEAYLLFTKLVE 532



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 68/263 (25%), Positives = 104/263 (39%), Gaps = 43/263 (16%)

Query: 150 RVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIK-----PDN 204
           R   A   F  M    C+ D F    LL  +CR  +   A + L    GR+K     PD+
Sbjct: 22  RHDKASAVFQEMIDKSCQPDAFTFAILLRGLCRSNQLEKARKLL----GRMKEMGCVPDD 77

Query: 205 DTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNS 264
             Y  L+ G+ K +D   A K   EMV         V  Y + +  L K  +   + V  
Sbjct: 78  AIYNALISGYSKAKDFGQAFKFLAEMVKNHCL--PTVVTYTNIVDGLCKA-ERTRDAVKL 134

Query: 265 LKRMMERGCNPGMTFFKLAFEECLTGQNLRGAE--------------------FIWG--- 301
           L  M ++GC+P +  + +  E     + L  A+                    FI G   
Sbjct: 135 LDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCK 194

Query: 302 --------AMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNI 353
                     + R+   PD   Y  +I+  C S +  +A ++LD M   G  PD+ TY+ 
Sbjct: 195 CDRVDEARKFLARMPVTPDVVSYTTVINGLCKSGDLDSASRMLDHMSNRGCTPDVVTYSS 254

Query: 354 LFEFLVKGRKLWEASGLFNEMVK 376
           L +   KG ++  A GL + M+K
Sbjct: 255 LIDGFCKGGEVERAMGLLDSMLK 277



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 67/162 (41%)

Query: 307 IGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWE 366
           +G+  +   YN ++      +    A  +  EM+     PD  T+ IL   L +  +L +
Sbjct: 1   MGYEHNVFTYNKLLLQLTREHRHDKASAVFQEMIDKSCQPDAFTFAILLRGLCRSNQLEK 60

Query: 367 ASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVA 426
           A  L   M +   V +     A +  Y  + D   A KF   M++NHC     T   +V 
Sbjct: 61  ARKLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEMVKNHCLPTVVTYTNIVD 120

Query: 427 GLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARK 468
           GLC      +AVK    M +KG     +  + + + L + RK
Sbjct: 121 GLCKAERTRDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERK 162



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 63/140 (45%), Gaps = 2/140 (1%)

Query: 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVM 161
           + +N+++D   K    D      K M ++N  ++ T+  +     V DR+ DA T    M
Sbjct: 401 FFYNVMLDSHCKRRQIDKALQIHKQMLEKNCCNVVTWNILVHGLCVDDRLSDAETMLLTM 460

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDV 220
              G   D     +L+ A+C+ GK+  A + F   V G   PD  TY+ L+ G   E   
Sbjct: 461 VDEGFIPDFVTYGTLVDAMCKCGKSAAALELFEEAVKGGCVPDVVTYSALITGLVHENMA 520

Query: 221 ANAKKTFGEMVIEVGWDPDN 240
             A   F ++V E  W PD+
Sbjct: 521 EEAYLLFTKLV-ERRWVPDD 539


>gi|225452994|ref|XP_002263091.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 588

 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 62/244 (25%), Positives = 114/244 (46%), Gaps = 5/244 (2%)

Query: 136 ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRV 195
            TF ++     V  ++ +A+  FD M   G + +V    +L++ +C+ G T  A + LR 
Sbjct: 141 TTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRS 200

Query: 196 VD-GRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG 254
           ++ G  +P+   ++ L++   K+R V  A   F EM+ + G  P N+  Y+S +  L K 
Sbjct: 201 MEQGNCQPNVVVFSTLIDSLCKDRQVTEAFNIFSEMITK-GISP-NIVTYNSLIHGLCKL 258

Query: 255 CDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTH 314
           C+  + T   +  M++    P +       +       +  A  +   M+ R G  P+  
Sbjct: 259 CEWKHVTT-LMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHR-GVEPNVV 316

Query: 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
            YN ++  +C  NE   A+K+ D MV+     ++ +YN L     K + + +A  LF EM
Sbjct: 317 TYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEM 376

Query: 375 VKNE 378
            + E
Sbjct: 377 SRQE 380



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 79/344 (22%), Positives = 151/344 (43%), Gaps = 13/344 (3%)

Query: 114 NCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFAL 173
           N L +A+    + + K+   S   F  + +S          ++    M+ +G   DV+ L
Sbjct: 49  NTLDEALSTFNRMLHKQPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTL 108

Query: 174 NSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVI 232
             +++++C   +   A+  L +++    +PD  T+  L+ G   E  +  A   F +M+ 
Sbjct: 109 AIVINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIG 168

Query: 233 EVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLK--RMMERG-CNPGMTFFKLAFEECLT 289
           E G+ P NV  Y     TL+ G   +  T  +++  R ME+G C P +  F    +    
Sbjct: 169 E-GFQP-NVVTYG----TLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCK 222

Query: 290 GQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQ 349
            + +  A  I+  M+ + G  P+   YN +I   C   E      L++EMV +   PD+ 
Sbjct: 223 DRQVTEAFNIFSEMITK-GISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVF 281

Query: 350 TYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYM 409
           T N + + L K   + EA  + + M+      N     A +  +   ++  VA+K +  M
Sbjct: 282 TLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTM 341

Query: 410 IENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTP 453
           +   C     + N L+ G C +  + +A+   + M+ +  ++TP
Sbjct: 342 VHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQ--ELTP 383



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 75/332 (22%), Positives = 129/332 (38%), Gaps = 43/332 (12%)

Query: 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASVFSSYVVADRVKDAITTFDV 160
           +  N VVD L K  +     D +  M    V  ++ T+ ++   + + + V  A+  FD 
Sbjct: 281 FTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDT 340

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL--RVVDGRIKPDNDTYAILLEGWEKER 218
           M    C  +V + N+L++  C+  +++D   +L   +    + P+  TY  L+ G     
Sbjct: 341 MVHKDCVANVISYNTLINGYCKI-QSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVG 399

Query: 219 DVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMT 278
            + +A   F EMV                                       RG  P + 
Sbjct: 400 RLQDAISLFHEMV--------------------------------------ARGQIPDLV 421

Query: 279 FFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDE 338
            ++   +     ++L  A  +  A+ G   + PD  +Y  ++   C + E   A  L   
Sbjct: 422 TYRTLSDYLCKNRHLDKAMALLKAIEGS-NWDPDIQIYTTILDGMCRAGELEDARDLFSN 480

Query: 339 MVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDD 398
           +   G  P++ TYNI+   L K   L EAS LF+EM KN    N        R ++ +++
Sbjct: 481 LSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGFLRNNE 540

Query: 399 PYVAIKFWKYMIENHCSDLSETGNLLVAGLCD 430
               I+  + M+    S    T  LLV  L D
Sbjct: 541 ALRTIELLEEMLARGFSVDVSTTTLLVGMLSD 572



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 83/372 (22%), Positives = 147/372 (39%), Gaps = 55/372 (14%)

Query: 124 IKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICR 182
           ++SM++ N   ++  F+++  S     +V +A   F  M   G   ++   NSL+  +C+
Sbjct: 198 LRSMEQGNCQPNVVVFSTLIDSLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCK 257

Query: 183 DGKTIDAWQFL-----RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWD 237
               +  W+ +      +VD +I PD  T   +++   KE  VA A     +M+I  G +
Sbjct: 258 ----LCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVV-DMMIHRGVE 312

Query: 238 PDNVPAYDSYLITLLKG-C--DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLR 294
           P NV  Y++    L+ G C  + +   V     M+ + C   +  +          Q++ 
Sbjct: 313 P-NVVTYNA----LMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVD 367

Query: 295 GAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNIL 354
            A +++  M  R    P+T  YN +I   C+      A+ L  EMV  G  PD+ TY  L
Sbjct: 368 KAMYLFEEM-SRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTL 426

Query: 355 FEFLVKGRKLWEASGLFNEM--------VKNENVLNHENCRA-----AVRVYMDSDDPYV 401
            ++L K R L +A  L   +        ++    +    CRA     A  ++ +     +
Sbjct: 427 SDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGL 486

Query: 402 AIKFWKY----------------------MIENHCSDLSETGNLLVAGLCDMHMLPEAVK 439
               W Y                      M +N CS    T NL+  G    +     ++
Sbjct: 487 QPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGFLRNNEALRTIE 546

Query: 440 YAKGMAEKGIQV 451
             + M  +G  V
Sbjct: 547 LLEEMLARGFSV 558


>gi|115480461|ref|NP_001063824.1| Os09g0542800 [Oryza sativa Japonica Group]
 gi|32526676|dbj|BAC79199.1| chloroplast RNA processing 1 -like protein [Oryza sativa Japonica
           Group]
 gi|113632057|dbj|BAF25738.1| Os09g0542800 [Oryza sativa Japonica Group]
 gi|125606498|gb|EAZ45534.1| hypothetical protein OsJ_30195 [Oryza sativa Japonica Group]
 gi|215768653|dbj|BAH00882.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 543

 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 83/345 (24%), Positives = 139/345 (40%), Gaps = 26/345 (7%)

Query: 33  PNLPPTIKTLCEIIANTPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGP-AVKFFRWS 91
           P LP     L  ++A+ PSP           ++    + ++L      P P AV FF   
Sbjct: 86  PPLPELSSALSGLLASPPSP-----------QLPLGLLRRLLALRRGVPLPEAVAFFHHV 134

Query: 92  AYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASVFSSYVVADR 150
              L     P  +  ++DLL K+  F      +  M++ +V +S     ++   YV A+ 
Sbjct: 135 LPSLPPDSLPALYAAMIDLLAKHHHFPLARHLLDEMRERSVPISAQLILALIRRYVRAEM 194

Query: 151 VKDAITTFDVMEQYGC-KHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAI 209
             +A   F  ME+YG    D   L SLL A+ +     +A            PD   Y  
Sbjct: 195 PSEASDLFRRMEEYGAGAPDPATLASLLGALSKKRLASEAQAMFDSYKSVFTPDVVLYTT 254

Query: 210 LLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMM 269
           L+  W +   +  A++ F EM  + G  P NV  Y + +  + +    +      L +M+
Sbjct: 255 LVHAWCRSGRLNEAERVFAEMQ-QAGVTP-NVYTYTAVIDAMYRA-GQVPRAQELLCQMI 311

Query: 270 ERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNET 329
           + GC P    F       +          +   M  ++G  PD   YN ++  +C   ++
Sbjct: 312 DSGCPPNTATFNAIMRAHVKAGRSEQVLQVHNQM-RQLGCEPDIITYNFLMETHCGKGQS 370

Query: 330 G--AAMKLLDEMVYNGAFPDIQTYNILFEFLV------KGRKLWE 366
              AAMK+L  M+  G  PD  T+N + + ++        RKL+E
Sbjct: 371 NLDAAMKMLTRMIAKGCIPDCHTFNPMLKLVLVLGNVNAARKLYE 415



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 56/244 (22%), Positives = 108/244 (44%), Gaps = 18/244 (7%)

Query: 114 NCLFDAMWDAIKSMKKENVL----------SLATFASVFSSYVVADRVKDAITTFDVMEQ 163
             + DAM+ A +  + + +L          + ATF ++  ++V A R +  +   + M Q
Sbjct: 288 TAVIDAMYRAGQVPRAQELLCQMIDSGCPPNTATFNAIMRAHVKAGRSEQVLQVHNQMRQ 347

Query: 164 YGCKHDVFALNSLLSAICRDGKT-IDAW--QFLRVVDGRIKPDNDTYAILLEGWEKERDV 220
            GC+ D+   N L+   C  G++ +DA      R++     PD  T+  +L+      +V
Sbjct: 348 LGCEPDIITYNFLMETHCGKGQSNLDAAMKMLTRMIAKGCIPDCHTFNPMLKLVLVLGNV 407

Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMME-RGCNPGMTF 279
             A+K + E + E+   P NV  Y+  L+  L   +   + V  +K+ M+ +G  P +  
Sbjct: 408 NAARKLY-ERMQELQCKP-NVVTYN--LLMRLFNLEKSMDMVLRIKKDMDAQGVEPNVNT 463

Query: 280 FKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEM 339
           +    E      N + A      MV     +P   +Y+M+++L   + +     +L++ M
Sbjct: 464 YAALIEAFCGRGNWKRAHMTLREMVEEKALKPTKPVYDMVLALLRKAGQLRRHEELVEMM 523

Query: 340 VYNG 343
           V  G
Sbjct: 524 VDRG 527



 Score = 41.2 bits (95), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 25/121 (20%), Positives = 50/121 (41%)

Query: 309 FRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEAS 368
           F PD  +Y  ++  +C S     A ++  EM   G  P++ TY  + + + +  ++  A 
Sbjct: 245 FTPDVVLYTTLVHAWCRSGRLNEAERVFAEMQQAGVTPNVYTYTAVIDAMYRAGQVPRAQ 304

Query: 369 GLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGL 428
            L  +M+ +    N     A +R ++ +      ++    M +  C     T N L+   
Sbjct: 305 ELLCQMIDSGCPPNTATFNAIMRAHVKAGRSEQVLQVHNQMRQLGCEPDIITYNFLMETH 364

Query: 429 C 429
           C
Sbjct: 365 C 365


>gi|413934035|gb|AFW68586.1| hypothetical protein ZEAMMB73_127077 [Zea mays]
          Length = 800

 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 86/350 (24%), Positives = 139/350 (39%), Gaps = 24/350 (6%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           T   + SS   A ++K+A      ME  GC  D    N+ LS +C+ G+  +A + L  +
Sbjct: 248 THTILLSSMCNAGQLKEAENLLHSMEDKGCPPDEVTYNAFLSGLCKAGRVDEAIERLEAL 307

Query: 197 --DGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG 254
              G        Y+ L++G           + + E++ +    PD V     Y I +++G
Sbjct: 308 RHTGTFVLGLKGYSCLIDGLFLAGRYEEGFQCYMEVLEQADVSPDIV----LYTI-MIRG 362

Query: 255 CDGIYETVNSLK---RMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRP 311
           C     T ++      M E+G  P    +    +      +L GA  +   MV R     
Sbjct: 363 CAEAGRTNDAFAFFDEMKEKGFTPDTFCYNTLLKALCDAGDLDGARSLMSEMV-RNNVVL 421

Query: 312 DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLF 371
           D H Y  MI   C       AM++ D MV  G  P + TYN+L + L +  +L EA  LF
Sbjct: 422 DIHTYTTMIIGLCKEQLVDEAMQVFDGMVEVGCHPSVMTYNVLIDGLYRAHRLEEARMLF 481

Query: 372 NEMVKNEN-------------VLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLS 418
            +M    N             V + E  +  V     S     A K  + +I++      
Sbjct: 482 YKMEVGNNPSLFLRLTLGANQVRDSETLQKLVESMCQSGQVLKAYKLLRGIIDSGVVPDV 541

Query: 419 ETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARK 468
            T N L+ GLC +  L  A++  + +  KG  +       L   L++A +
Sbjct: 542 VTYNTLLNGLCKVRNLDGALRLFRELQVKGFPLDEITYGTLIDSLLRAHR 591



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 100/430 (23%), Positives = 169/430 (39%), Gaps = 79/430 (18%)

Query: 102 YAWNLVVDLLGKNCLFDAMWDA----------IKSMKKENVL-SLATFASVFSSYVVADR 150
           +    V+ L G +CL D ++ A          ++ +++ +V   +  +  +      A R
Sbjct: 309 HTGTFVLGLKGYSCLIDGLFLAGRYEEGFQCYMEVLEQADVSPDIVLYTIMIRGCAEAGR 368

Query: 151 VKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAI 209
             DA   FD M++ G   D F  N+LL A+C  G    A   +  +V   +  D  TY  
Sbjct: 369 TNDAFAFFDEMKEKGFTPDTFCYNTLLKALCDAGDLDGARSLMSEMVRNNVVLDIHTYTT 428

Query: 210 LLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIY-----ETVNS 264
           ++ G  KE+ V  A + F  MV EVG  P +V  Y+  +       DG+Y     E    
Sbjct: 429 MIIGLCKEQLVDEAMQVFDGMV-EVGCHP-SVMTYNVLI-------DGLYRAHRLEEARM 479

Query: 265 LKRMMERGCNPGM---------------TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGF 309
           L   ME G NP +               T  KL    C +GQ L+  + + G +    G 
Sbjct: 480 LFYKMEVGNNPSLFLRLTLGANQVRDSETLQKLVESMCQSGQVLKAYKLLRGIIDS--GV 537

Query: 310 RPDTHMYNMMISLYCYSNETGAAMKL----------LDEMVY------------------ 341
            PD   YN +++  C       A++L          LDE+ Y                  
Sbjct: 538 VPDVVTYNTLLNGLCKVRNLDGALRLFRELQVKGFPLDEITYGTLIDSLLRAHRYNDALT 597

Query: 342 -------NGAFPDIQTYNILFEFLVKGRKLWEASGL-FNEMVKNENVLNHENCRAAVRVY 393
                  +G  P +  YN +   L + +KL +A  L F+ + +  N+L  +   ++ R  
Sbjct: 598 LFQDILHSGGTPSMPIYNSMMRSLCRMQKLSQAINLWFDHLPRKYNLLAQDEVISSARKK 657

Query: 394 MDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTP 453
            +    + A++    + + + S  S    + + GL     + +A+K    + E GI +TP
Sbjct: 658 FEEGCLHEAVRELIKIDQEYGSVNSCPYTIWLIGLIQAGRIEDALKIFHILEESGIDITP 717

Query: 454 FALSKLKQIL 463
                L + L
Sbjct: 718 ACCVHLSKYL 727



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 104/456 (22%), Positives = 167/456 (36%), Gaps = 65/456 (14%)

Query: 27  ASHLDVPNLPPTIKTLCEIIANTPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVK 86
           A H  +  LPP++            P++   L     R++  +V   L      P   ++
Sbjct: 42  ALHALLSTLPPSL------------PSLFPCLSLLSRRLTPHSVADALLCDALPPASRIR 89

Query: 87  FFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLS-LATFASVFSSY 145
            F +SA     +        VV +L       AM+DAI   +   +    A F ++  ++
Sbjct: 90  LFLFSALTPRLRSPLLHSRAVVPILLATDADAAMYDAIADAQAAGLQPPTAAFEALIFAH 149

Query: 146 VVADRVKDAITTFDVME-QYGCKHDVFALNS----------------------------- 175
             A R  +A+  F  ME ++GC+   F  N+                             
Sbjct: 150 ASAGRHHEAVEAFSRMEGEFGCRPTTFVYNAVLRVLVASGGAVPLALALYNRMVAAGCLP 209

Query: 176 -------LLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTF 227
                  L+  +C+ G  +DA + F  ++   I P+  T+ ILL        +  A+   
Sbjct: 210 NRATYNVLIHGLCKRGTPVDALKLFDEMISRGITPNVKTHTILLSSMCNAGQLKEAENLL 269

Query: 228 GEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTF-FKLAFEE 286
             M  + G  PD V  Y+++L  L K    + E +  L+ +   G     TF   L    
Sbjct: 270 HSME-DKGCPPDEV-TYNAFLSGLCKA-GRVDEAIERLEALRHTG-----TFVLGLKGYS 321

Query: 287 CLTGQNLRGAEFIWG-----AMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVY 341
           CL         +  G      ++ +    PD  +Y +MI     +  T  A    DEM  
Sbjct: 322 CLIDGLFLAGRYEEGFQCYMEVLEQADVSPDIVLYTIMIRGCAEAGRTNDAFAFFDEMKE 381

Query: 342 NGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYV 401
            G  PD   YN L + L     L  A  L +EMV+N  VL+       +           
Sbjct: 382 KGFTPDTFCYNTLLKALCDAGDLDGARSLMSEMVRNNVVLDIHTYTTMIIGLCKEQLVDE 441

Query: 402 AIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEA 437
           A++ +  M+E  C     T N+L+ GL   H L EA
Sbjct: 442 AMQVFDGMVEVGCHPSVMTYNVLIDGLYRAHRLEEA 477



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 71/178 (39%), Gaps = 2/178 (1%)

Query: 275 PGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSN-ETGAAM 333
           P   F  L F     G++    E  +  M G  G RP T +YN ++ +   S      A+
Sbjct: 138 PTAAFEALIFAHASAGRHHEAVE-AFSRMEGEFGCRPTTFVYNAVLRVLVASGGAVPLAL 196

Query: 334 KLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVY 393
            L + MV  G  P+  TYN+L   L K     +A  LF+EM+      N +     +   
Sbjct: 197 ALYNRMVAAGCLPNRATYNVLIHGLCKRGTPVDALKLFDEMISRGITPNVKTHTILLSSM 256

Query: 394 MDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQV 451
            ++     A      M +  C     T N  ++GLC    + EA++  + +   G  V
Sbjct: 257 CNAGQLKEAENLLHSMEDKGCPPDEVTYNAFLSGLCKAGRVDEAIERLEALRHTGTFV 314


>gi|125564557|gb|EAZ09937.1| hypothetical protein OsI_32236 [Oryza sativa Indica Group]
          Length = 544

 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 83/345 (24%), Positives = 139/345 (40%), Gaps = 26/345 (7%)

Query: 33  PNLPPTIKTLCEIIANTPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGP-AVKFFRWS 91
           P LP     L  ++A+ PSP           ++    + ++L      P P AV FF   
Sbjct: 87  PPLPELSSALSGLLASPPSP-----------QLPLGLLRRLLALRRGVPLPEAVAFFHHV 135

Query: 92  AYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASVFSSYVVADR 150
              L     P  +  ++DLL K+  F      +  M++ +V +S     ++   YV A+ 
Sbjct: 136 LPSLPPDSLPALYAAMIDLLAKHHHFPLARHLLDEMRERSVPISAQLILALIRRYVRAEM 195

Query: 151 VKDAITTFDVMEQYGC-KHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAI 209
             +A   F  ME+YG    D   L SLL A+ +     +A            PD   Y  
Sbjct: 196 PSEASDLFRRMEEYGAGAPDPATLASLLGALSKKRLASEAQAMFDSYKSVFTPDVVLYTT 255

Query: 210 LLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMM 269
           L+  W +   +  A++ F EM  + G  P NV  Y + +  + +    +      L +M+
Sbjct: 256 LVHAWCRSGRLDEAERVFAEMQ-QAGVTP-NVYTYTAVIDAMYRA-GQVPRAQELLCQMI 312

Query: 270 ERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNET 329
           + GC P    F       +          +   M  ++G  PD   YN ++  +C   ++
Sbjct: 313 DSGCPPNTATFNAIMRAHVKAGRSEQVLQVHNQM-RQLGCEPDIITYNFLMETHCGKGQS 371

Query: 330 G--AAMKLLDEMVYNGAFPDIQTYNILFEFLV------KGRKLWE 366
              AAMK+L  M+  G  PD  T+N + + ++        RKL+E
Sbjct: 372 NLDAAMKMLTRMIAKGCIPDCHTFNPMLKLVLVLGNVNAARKLYE 416



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 57/244 (23%), Positives = 108/244 (44%), Gaps = 18/244 (7%)

Query: 114 NCLFDAMWDAIKSMKKENVL----------SLATFASVFSSYVVADRVKDAITTFDVMEQ 163
             + DAM+ A +  + + +L          + ATF ++  ++V A R +  +   + M Q
Sbjct: 289 TAVIDAMYRAGQVPRAQELLCQMIDSGCPPNTATFNAIMRAHVKAGRSEQVLQVHNQMRQ 348

Query: 164 YGCKHDVFALNSLLSAICRDGKT-IDAW--QFLRVVDGRIKPDNDTYAILLEGWEKERDV 220
            GC+ D+   N L+   C  G++ +DA      R++     PD  T+  +L+      +V
Sbjct: 349 LGCEPDIITYNFLMETHCGKGQSNLDAAMKMLTRMIAKGCIPDCHTFNPMLKLVLVLGNV 408

Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMME-RGCNPGMTF 279
             A+K + E + E+   P NV  Y+  L+  L   +   + V  +KR M+ +G  P +  
Sbjct: 409 NAARKLY-ERMQELQCKP-NVVTYN--LLMRLFNLEKSMDMVLRIKRDMDAQGVEPNVNT 464

Query: 280 FKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEM 339
           +    E      N + A      MV     +P   +Y+M+++L   + +     +L++ M
Sbjct: 465 YAALIEAFCGRGNWKRAHMTLREMVEEKALKPTKPVYDMVLALLRKAGQLRRHEELVEMM 524

Query: 340 VYNG 343
           V  G
Sbjct: 525 VDRG 528



 Score = 40.8 bits (94), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 25/121 (20%), Positives = 50/121 (41%)

Query: 309 FRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEAS 368
           F PD  +Y  ++  +C S     A ++  EM   G  P++ TY  + + + +  ++  A 
Sbjct: 246 FTPDVVLYTTLVHAWCRSGRLDEAERVFAEMQQAGVTPNVYTYTAVIDAMYRAGQVPRAQ 305

Query: 369 GLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGL 428
            L  +M+ +    N     A +R ++ +      ++    M +  C     T N L+   
Sbjct: 306 ELLCQMIDSGCPPNTATFNAIMRAHVKAGRSEQVLQVHNQMRQLGCEPDIITYNFLMETH 365

Query: 429 C 429
           C
Sbjct: 366 C 366


>gi|302757245|ref|XP_002962046.1| hypothetical protein SELMODRAFT_76034 [Selaginella moellendorffii]
 gi|300170705|gb|EFJ37306.1| hypothetical protein SELMODRAFT_76034 [Selaginella moellendorffii]
          Length = 465

 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 89/353 (25%), Positives = 148/353 (41%), Gaps = 13/353 (3%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           TF ++ + +    R  D     + M     + +V + N LL  +C+  +  +A + +R +
Sbjct: 12  TFNALVNGFSKQGRPGDCERLLETMAARDIQPNVVSYNGLLEGLCKLERWHEAEELVRDM 71

Query: 197 ---DGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLK 253
               GR  PD  TY+ LL G+ K   V  +++   E VI  G  PD +  Y   + +L K
Sbjct: 72  ISRGGRSTPDMVTYSTLLSGYCKAGKVEESRELLKE-VISRGLRPDAL-MYTKVVASLCK 129

Query: 254 GCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDT 313
               + E +  L+ M+  GC P +  F      C   +NL  A+ +   M    G + D 
Sbjct: 130 SAR-LGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQKMAAS-GVKADV 187

Query: 314 HMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNE 373
             YN ++   C +     A +LL+ M  +G  PD+  Y+     L K  K+ +A  +  +
Sbjct: 188 VTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLDAHQVLEQ 247

Query: 374 MVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETG-NLLVAGLCDMH 432
           M  + +  N       +     S     A++  + M  +    L+  G + +V GLC + 
Sbjct: 248 MRDSHHDPNVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLG 307

Query: 433 MLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARK-----EAVYEELLKKCK 480
              EA    + MA  G +      S L   L KA K     EAV E  ++ CK
Sbjct: 308 RTQEARSVMEAMARAGCRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCK 360



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 79/351 (22%), Positives = 138/351 (39%), Gaps = 44/351 (12%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           +L TF ++ S       ++ A +    M   G K DV   N+L+  +C+ G+  +A Q L
Sbjct: 151 TLITFNTLISGCCREKNLEMADSLLQKMAASGVKADVVTYNTLMDGLCKAGRLQEAEQLL 210

Query: 194 -RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
            R+      PD   Y+  + G  K   V +A +   E + +   DP NV  Y++ L  L 
Sbjct: 211 ERMKASGCAPDVVAYSSFVYGLCKSGKVLDAHQVL-EQMRDSHHDP-NVVTYNTILDGLC 268

Query: 253 KGCDGIYETVNSLKRMMER-----GCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRI 307
           K        +++   MME+     GC   +  +    +        + A  +  AM  R 
Sbjct: 269 KS-----GKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEARSVMEAMA-RA 322

Query: 308 GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEA 367
           G RPD   Y+ +++  C + +   A++ + EM   G  P+  TY  L   L    +L EA
Sbjct: 323 GCRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCSLVHGLCSCGRLAEA 382

Query: 368 SGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAG 427
             +  EM          +C  +V  Y                            N L+ G
Sbjct: 383 ERMVEEMSSGGG--GGHHCPPSVSTY----------------------------NALIGG 412

Query: 428 LCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKK 478
           LC    + +A+K+ + M  +G      + S + + L ++ +    E +L +
Sbjct: 413 LCKAGRIDDALKFFQRMRSQGCDPDGVSYSTIVEGLARSGRALQAEMILSE 463



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/280 (23%), Positives = 108/280 (38%), Gaps = 42/280 (15%)

Query: 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL- 193
           + T+ ++      A R+++A    + M+  GC  DV A +S +  +C+ GK +DA Q L 
Sbjct: 187 VVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLDAHQVLE 246

Query: 194 RVVDGRIKPDNDTYAILLEGWEKERDVANA------------------------------ 223
           ++ D    P+  TY  +L+G  K   +  A                              
Sbjct: 247 QMRDSHHDPNVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKL 306

Query: 224 -----KKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNP-GM 277
                 ++  E +   G  PD V  Y S +  L K    I E V +++ M   GC P  +
Sbjct: 307 GRTQEARSVMEAMARAGCRPD-VVTYSSLVNGLCKA-GKIEEAVEAVREMAMEGCKPNAV 364

Query: 278 TFFKLAFEECLTG---QNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMK 334
           T+  L    C  G   +  R  E +     G     P    YN +I   C +     A+K
Sbjct: 365 TYCSLVHGLCSCGRLAEAERMVEEMSSGGGGGHHCPPSVSTYNALIGGLCKAGRIDDALK 424

Query: 335 LLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
               M   G  PD  +Y+ + E L +  +  +A  + +E+
Sbjct: 425 FFQRMRSQGCDPDGVSYSTIVEGLARSGRALQAEMILSEV 464



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/218 (24%), Positives = 106/218 (48%), Gaps = 14/218 (6%)

Query: 94  QLNDKH---SPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENV--LSLATFASVFSSYVVA 148
           Q+ D H   +   +N ++D L K+   D   + ++ M   +   L++  +++V       
Sbjct: 247 QMRDSHHDPNVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKL 306

Query: 149 DRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR--VVDGRIKPDNDT 206
            R ++A +  + M + GC+ DV   +SL++ +C+ GK  +A + +R   ++G  KP+  T
Sbjct: 307 GRTQEARSVMEAMARAGCRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEG-CKPNAVT 365

Query: 207 YAILLEGWEKERDVANAKKTFGEMVIEVGWD---PDNVPAYDSYLITLLKGCDGIYETVN 263
           Y  L+ G      +A A++   EM    G     P +V  Y++ +  L K    I + + 
Sbjct: 366 YCSLVHGLCSCGRLAEAERMVEEMSSGGGGGHHCPPSVSTYNALIGGLCKA-GRIDDALK 424

Query: 264 SLKRMMERGCNP-GMTFFKLAFEECLTGQNLRGAEFIW 300
             +RM  +GC+P G+++  +      +G+ L+ AE I 
Sbjct: 425 FFQRMRSQGCDPDGVSYSTIVEGLARSGRALQ-AEMIL 461


>gi|125604707|gb|EAZ43743.1| hypothetical protein OsJ_28367 [Oryza sativa Japonica Group]
          Length = 812

 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 114/504 (22%), Positives = 184/504 (36%), Gaps = 121/504 (24%)

Query: 85  VKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFD-AMWDAIKSMKKENV-LSLATFASVF 142
           ++ F +SA     +  P   + V  LL  +   D AM+DA+   +   +  S + FA++ 
Sbjct: 85  LRLFLFSALSPRLRSRPLHAHAVSLLLRLSSHADEAMFDALADARAAGLPASSSAFAALV 144

Query: 143 SSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIK 201
           +++  A R  DA+  F  M+++  +   F  N++L A+   G  + A     R+V     
Sbjct: 145 AAHSSAGRNADAVQAFSRMDEFQSRPTAFVYNTILKALVDSGVILLALALYNRMVAAGCA 204

Query: 202 PDNDTYAILLEGWEKERDVANAKKTFGEMV-------IEV-------------------- 234
           P+  TY +L++G  K+    +A K F EM+       +++                    
Sbjct: 205 PNRATYNVLMDGLCKQGMAGDALKMFDEMLDRGIMPNVKIYTVLLSSLCNAGKIDEAVQL 264

Query: 235 -------GWDPDNVPAYDSYLITL------------------------LKG----CDGIY 259
                  G  PD V  Y+++L  L                        LKG     DG++
Sbjct: 265 LGSMKDKGCLPDEV-TYNAFLSGLCKVGRVNEAFQRLVMLQDGGFALGLKGYSCLIDGLF 323

Query: 260 ------ETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDT 313
                 E     K M+ER  +P +  + +    C     +  A      M  + GF PDT
Sbjct: 324 QARRFDEGFGYYKTMLERNISPDVVLYTIMIRGCAEAGRIEDALSFLDVMKKK-GFVPDT 382

Query: 314 HMYN-----------------------------------MMISLYCYSNETGAAMKLLDE 338
             YN                                   +MI   C       AM++ DE
Sbjct: 383 FCYNTVLKVLCDHGDLERAHTLRSEMLQNNLVLDSTTQTIMICGLCKRGLVDEAMQIFDE 442

Query: 339 MVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNEN-------------VLNHEN 385
           M  +G  P + TYN L +   +  +L EA  LF++M    N             V + E+
Sbjct: 443 MGEHGCDPTVMTYNALIDGFYREGRLEEARMLFHKMEMGNNPSLFLRLTLGANQVCDSES 502

Query: 386 CRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMA 445
            R  V     S     A K  + +I++       T N L+ GLC    L  AV+  K + 
Sbjct: 503 LRKLVHDMCQSGQVLKAYKLLRSIIDSGVVPDVVTYNTLINGLCKARNLDGAVRLFKELQ 562

Query: 446 EKGIQVTPFALSKLKQILIKARKE 469
            KGI         L   L++A +E
Sbjct: 563 LKGISPDEITYGTLIDGLLRAHRE 586



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 85/350 (24%), Positives = 148/350 (42%), Gaps = 47/350 (13%)

Query: 105 NLVVDLLGKNCLFDAMWDA---------IKSMKKENVL-SLATFASVFSSYVVADRVKDA 154
              + L G +CL D ++ A          K+M + N+   +  +  +      A R++DA
Sbjct: 307 GFALGLKGYSCLIDGLFQARRFDEGFGYYKTMLERNISPDVVLYTIMIRGCAEAGRIEDA 366

Query: 155 ITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR--VVDGRIKPDNDTYAILLE 212
           ++  DVM++ G   D F  N++L  +C  G  ++    LR  ++   +  D+ T  I++ 
Sbjct: 367 LSFLDVMKKKGFVPDTFCYNTVLKVLCDHGD-LERAHTLRSEMLQNNLVLDSTTQTIMIC 425

Query: 213 GWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERG 272
           G  K   V  A + F EM  E G DP  V  Y++ +    +  +G  E    L   ME G
Sbjct: 426 GLCKRGLVDEAMQIFDEMG-EHGCDP-TVMTYNALIDGFYR--EGRLEEARMLFHKMEMG 481

Query: 273 CNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAA 332
            NP + F +L            GA  +            D+     ++   C S +   A
Sbjct: 482 NNPSL-FLRLTL----------GANQVC-----------DSESLRKLVHDMCQSGQVLKA 519

Query: 333 MKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM----VKNENVLNHENCRA 388
            KLL  ++ +G  PD+ TYN L   L K R L  A  LF E+    +  + +        
Sbjct: 520 YKLLRSIIDSGVVPDVVTYNTLINGLCKARNLDGAVRLFKELQLKGISPDEITYGTLIDG 579

Query: 389 AVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAV 438
            +R + ++D    A+  ++ ++++  S      N ++  LC M  L +A+
Sbjct: 580 LLRAHREND----AMMLFQNILQSGSSPSLSIYNSMMRSLCRMKKLSQAI 625


>gi|115477950|ref|NP_001062570.1| Os09g0110200 [Oryza sativa Japonica Group]
 gi|46806362|dbj|BAD17538.1| PPR protein-like protein [Oryza sativa Japonica Group]
 gi|46806431|dbj|BAD17588.1| PPR protein-like protein [Oryza sativa Japonica Group]
 gi|113630803|dbj|BAF24484.1| Os09g0110200 [Oryza sativa Japonica Group]
          Length = 794

 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 114/504 (22%), Positives = 184/504 (36%), Gaps = 121/504 (24%)

Query: 85  VKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFD-AMWDAIKSMKKENV-LSLATFASVF 142
           ++ F +SA     +  P   + V  LL  +   D AM+DA+   +   +  S + FA++ 
Sbjct: 85  LRLFLFSALSPRLRSRPLHAHAVSLLLRLSSHADEAMFDALADARAAGLPASSSAFAALV 144

Query: 143 SSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIK 201
           +++  A R  DA+  F  M+++  +   F  N++L A+   G  + A     R+V     
Sbjct: 145 AAHSSAGRHADAVQAFSRMDEFQSRPTAFVYNTILKALVDSGVILLALALYNRMVAAGCA 204

Query: 202 PDNDTYAILLEGWEKERDVANAKKTFGEMV-------IEV-------------------- 234
           P+  TY +L++G  K+    +A K F EM+       +++                    
Sbjct: 205 PNRATYNVLMDGLCKQGMAGDALKMFDEMLDRGIMPNVKIYTVLLSSLCNAGKIDEAVQL 264

Query: 235 -------GWDPDNVPAYDSYLITL------------------------LKG----CDGIY 259
                  G  PD V  Y+++L  L                        LKG     DG++
Sbjct: 265 LGSMKDKGCLPDEV-TYNAFLSGLCKVGRVNEAFQRLVMLQDGGFALGLKGYSCLIDGLF 323

Query: 260 ------ETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDT 313
                 E     K M+ER  +P +  + +    C     +  A      M  + GF PDT
Sbjct: 324 QARRFDEGFGYYKTMLERNISPDVVLYTIMIRGCAEAGRIEDALSFLDVMKKK-GFVPDT 382

Query: 314 HMYN-----------------------------------MMISLYCYSNETGAAMKLLDE 338
             YN                                   +MI   C       AM++ DE
Sbjct: 383 FCYNTVLKVLCDHGDLERAHTLRSEMLQNNLVLDSTTQTIMICGLCKRGLVDEAMQIFDE 442

Query: 339 MVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNEN-------------VLNHEN 385
           M  +G  P + TYN L +   +  +L EA  LF++M    N             V + E+
Sbjct: 443 MGEHGCDPTVMTYNALIDGFYREGRLEEARMLFHKMEMGNNPSLFLRLTLGANQVCDSES 502

Query: 386 CRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMA 445
            R  V     S     A K  + +I++       T N L+ GLC    L  AV+  K + 
Sbjct: 503 LRKLVHDMCQSGQVLKAYKLLRSIIDSGVVPDVVTYNTLINGLCKARNLDGAVRLFKELQ 562

Query: 446 EKGIQVTPFALSKLKQILIKARKE 469
            KGI         L   L++A +E
Sbjct: 563 LKGISPDEITYGTLIDGLLRAHRE 586



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 85/347 (24%), Positives = 148/347 (42%), Gaps = 47/347 (13%)

Query: 108 VDLLGKNCLFDAMWDA---------IKSMKKENVL-SLATFASVFSSYVVADRVKDAITT 157
           + L G +CL D ++ A          K+M + N+   +  +  +      A R++DA++ 
Sbjct: 310 LGLKGYSCLIDGLFQARRFDEGFGYYKTMLERNISPDVVLYTIMIRGCAEAGRIEDALSF 369

Query: 158 FDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR--VVDGRIKPDNDTYAILLEGWE 215
            DVM++ G   D F  N++L  +C  G  ++    LR  ++   +  D+ T  I++ G  
Sbjct: 370 LDVMKKKGFVPDTFCYNTVLKVLCDHGD-LERAHTLRSEMLQNNLVLDSTTQTIMICGLC 428

Query: 216 KERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNP 275
           K   V  A + F EM  E G DP  V  Y++ +    +  +G  E    L   ME G NP
Sbjct: 429 KRGLVDEAMQIFDEMG-EHGCDP-TVMTYNALIDGFYR--EGRLEEARMLFHKMEMGNNP 484

Query: 276 GMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKL 335
            + F +L            GA  +            D+     ++   C S +   A KL
Sbjct: 485 SL-FLRLTL----------GANQVC-----------DSESLRKLVHDMCQSGQVLKAYKL 522

Query: 336 LDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM----VKNENVLNHENCRAAVR 391
           L  ++ +G  PD+ TYN L   L K R L  A  LF E+    +  + +         +R
Sbjct: 523 LRSIIDSGVVPDVVTYNTLINGLCKARNLDGAVRLFKELQLKGISPDEITYGTLIDGLLR 582

Query: 392 VYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAV 438
            + ++D    A+  ++ ++++  S      N ++  LC M  L +A+
Sbjct: 583 AHREND----AMMLFQNILQSGSSPSLSIYNSMMRSLCRMKKLSQAI 625


>gi|414872432|tpg|DAA50989.1| TPA: hypothetical protein ZEAMMB73_390723 [Zea mays]
          Length = 604

 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 105/439 (23%), Positives = 177/439 (40%), Gaps = 53/439 (12%)

Query: 51  SPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVK--FFRWSAYQLNDKHSPYAWNLVV 108
            P  E  L+  ++RV    V +V+K   +  G  VK  FFRW+A + N +H    +  ++
Sbjct: 41  GPDAEKALEVLMLRVDHWLVREVMK---TDVGVNVKMQFFRWAAKRRNYEHDTSTYMALI 97

Query: 109 DLLGKNCLFDAMWDAIKSMKKEN--VLSLATFASVFSSYVVADRVKDAITTFDVMEQYGC 166
             L     +  MW  I+ M +    V++    + V      A  V+ AIT F  ++   C
Sbjct: 98  HCLEVVEQYGEMWKMIQEMVRNPICVVTPTELSDVVRMLGNAKMVRQAITIFYQIKTRKC 157

Query: 167 KHDVFALNSLLSAICRDGKTIDAWQFLR--VVDGRIKPDNDTYAILLEGWEKERDVANAK 224
           +    A NS++  +  +G+     Q       +G   PD  TY+ L+  + K     +A 
Sbjct: 158 QPIAQAYNSMIIMLMHEGQYEKVHQLYNEMSTEGHCFPDTVTYSALISAFCKLGRRDSAI 217

Query: 225 KTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAF 284
           +   EM  E+G  P       + LI L    +  +  ++  + M  + C P +      +
Sbjct: 218 QLLNEMK-EIGMQPTT--KIYTMLIALFFKFNDAHGALSLFEEMRHQYCRPDV----FTY 270

Query: 285 EECLTGQNLRG---AEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVY 341
            E + G    G     + +   + R G RPDT   N MI+    +     AMKL  EM  
Sbjct: 271 TELIRGLGKAGRIDEAYHFFCEMQREGCRPDTVFMNNMINFLGKAGRLDDAMKLFQEMET 330

Query: 342 NGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYV 401
               P + TYN + + L + +                        RA       S+ P  
Sbjct: 331 LRCIPSVVTYNTIIKALFESKS-----------------------RA-------SEVP-- 358

Query: 402 AIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQ 461
              +++ M E+  S  S T ++L+ G C  + + +A+   + M EKG    P A   L  
Sbjct: 359 --SWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLID 416

Query: 462 ILIKARKEAVYEELLKKCK 480
            L KA++  +  EL ++ K
Sbjct: 417 ALGKAKRYDLACELFQELK 435



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 69/292 (23%), Positives = 123/292 (42%), Gaps = 12/292 (4%)

Query: 74  LKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL 133
           L F ++    A+  F    +Q   +   + +  ++  LGK    D  +     M++E   
Sbjct: 241 LFFKFNDAHGALSLFEEMRHQYC-RPDVFTYTELIRGLGKAGRIDEAYHFFCEMQREGCR 299

Query: 134 SLATFASVFSSYV-VADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRD---GKTIDA 189
               F +   +++  A R+ DA+  F  ME   C   V   N+++ A+         + +
Sbjct: 300 PDTVFMNNMINFLGKAGRLDDAMKLFQEMETLRCIPSVVTYNTIIKALFESKSRASEVPS 359

Query: 190 WQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLI 249
           W F R+ +  I P + TY+IL++G+ K   +  A     EM  E G+ P   PA    LI
Sbjct: 360 W-FERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMD-EKGFPP--CPAAYCSLI 415

Query: 250 TLLKGCDGIYETVNSLKRMMERGC-NPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIG 308
             L G    Y+    L + ++  C +     + +  +       L  A  ++  M  ++G
Sbjct: 416 DAL-GKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEM-NKLG 473

Query: 309 FRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVK 360
             PD + YN ++S    +     A+  +  M  +G  PDI +YNI+   L K
Sbjct: 474 CAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLAK 525



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 84/172 (48%), Gaps = 8/172 (4%)

Query: 101 PYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYV-VADRVKDAITTFD 159
           P A+  ++D LGK   +D   +  + +K+    S A   +V   ++  A R+ DAI  FD
Sbjct: 408 PAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMFD 467

Query: 160 VMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVD--GRIKPDNDTYAILLEGWEKE 217
            M + GC  DV+A N+L+S + R G   +A   +R +   G I PD ++Y I+L G  K 
Sbjct: 468 EMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCI-PDINSYNIILNGLAKT 526

Query: 218 RDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMM 269
                A +    M  +    PD V +Y++ L  L     G++E  + L + M
Sbjct: 527 GGPHRAMEMLSNMK-QSTVRPD-VVSYNTVLGALSHA--GMFEEASKLMKEM 574



 Score = 48.1 bits (113), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 52/226 (23%), Positives = 105/226 (46%), Gaps = 7/226 (3%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           T++ +   +   +R++ A+   + M++ G      A  SL+ A+ +  +   A +  + +
Sbjct: 375 TYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQEL 434

Query: 197 DGRIKPDN-DTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
                  +   YA++++   K   + +A   F EM  ++G  PD V AY++ L++ L   
Sbjct: 435 KENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMN-KLGCAPD-VYAYNA-LMSGLART 491

Query: 256 DGIYETVNSLKRMMERGCNPGMTFFKLAFEECL-TGQNLRGAEFIWGAMVGRIGFRPDTH 314
             + E +++++RM E GC P +  + +       TG   R  E +  + + +   RPD  
Sbjct: 492 GMLDEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEML--SNMKQSTVRPDVV 549

Query: 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVK 360
            YN ++    ++     A KL+ EM   G   D+ TY+ + E + K
Sbjct: 550 SYNTVLGALSHAGMFEEASKLMKEMNTLGFEYDLITYSSILEAIGK 595


>gi|262316881|emb|CAZ44330.1| homologue to restoring pentatricopeptide repeat protein [Raphanus
           sativus]
          Length = 686

 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 82/355 (23%), Positives = 144/355 (40%), Gaps = 45/355 (12%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           ++ TF ++     V DR+ +A+  F  M    CK +V    +L++ +CR+G+ ++A   L
Sbjct: 150 TVVTFNTLLHGLCVEDRISEALDLFHQM----CKPNVVTFTTLMNGLCREGRVVEAVALL 205

Query: 194 -RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
            R+++  ++P+  TY  +++G  K  D  +A     +M  EV     NV  Y++ +  L 
Sbjct: 206 DRMLEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKME-EVSHIIPNVVIYNTIIDGLW 264

Query: 253 KGCDGIYETVNSL------------------------------------KRMMERGCNPG 276
           K  DG +   ++L                                    + M+ER  NP 
Sbjct: 265 K--DGRHSDAHNLFIEMQEKEIFPDIVTYNCMINGFCISGRWSDAEQLLQEMLERKINPD 322

Query: 277 MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLL 336
           +  F       +       AE ++  M+ R    P T  Y+ MI  +C  N   AA  + 
Sbjct: 323 VVTFSALINAFVKEGKFFEAEELYDEMLPR-SIIPSTVTYSSMIDGFCKQNRLDAAEHMF 381

Query: 337 DEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDS 396
                 G  PDI T+N L     + +++ +   L +EM +   V N       +  +   
Sbjct: 382 YLTPTKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQV 441

Query: 397 DDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQV 451
            D   A    + MI +       T N L+ GLCD   L +A++  K M +  + +
Sbjct: 442 GDLNAAQDLLQEMISSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDI 496



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 75/343 (21%), Positives = 139/343 (40%), Gaps = 8/343 (2%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           +F  +   +    ++  A++TF  + + G    V   N+LL  +C + +  +A      +
Sbjct: 118 SFTILMKCFCSCSKLPFALSTFGKITKLGFHPTVVTFNTLLHGLCVEDRISEALDLFHQM 177

Query: 197 DGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD 256
               KP+  T+  L+ G  +E  V  A      M +E G  P+ +  Y + +  + K  D
Sbjct: 178 ---CKPNVVTFTTLMNGLCREGRVVEAVALLDRM-LEDGLQPNQI-TYGTIVDGMCKMGD 232

Query: 257 GIYETVNSLKRMMERG-CNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHM 315
            +   +N L++M E     P +  +    +          A  ++  M  +  F PD   
Sbjct: 233 TV-SALNLLRKMEEVSHIIPNVVIYNTIIDGLWKDGRHSDAHNLFIEMQEKEIF-PDIVT 290

Query: 316 YNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
           YN MI+ +C S     A +LL EM+     PD+ T++ L    VK  K +EA  L++EM+
Sbjct: 291 YNCMINGFCISGRWSDAEQLLQEMLERKINPDVVTFSALINAFVKEGKFFEAEELYDEML 350

Query: 376 KNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLP 435
               + +     + +  +   +    A   +       CS    T N L+AG C    + 
Sbjct: 351 PRSIIPSTVTYSSMIDGFCKQNRLDAAEHMFYLTPTKGCSPDIITFNTLIAGYCRAKRVD 410

Query: 436 EAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKK 478
           + +K    M E G+       + L     +       ++LL++
Sbjct: 411 DGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQE 453



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 82/362 (22%), Positives = 148/362 (40%), Gaps = 34/362 (9%)

Query: 114 NCLFDAMW------DA----IKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQ 163
           N + D +W      DA    I+  +KE    + T+  + + + ++ R  DA      M +
Sbjct: 257 NTIIDGLWKDGRHSDAHNLFIEMQEKEIFPDIVTYNCMINGFCISGRWSDAEQLLQEMLE 316

Query: 164 YGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERDVAN 222
                DV   ++L++A  ++GK  +A +    ++   I P   TY+ +++G+ K+  +  
Sbjct: 317 RKINPDVVTFSALINAFVKEGKFFEAEELYDEMLPRSIIPSTVTYSSMIDGFCKQNRLDA 376

Query: 223 AKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG-CDG--IYETVNSLKRMMERGCNPG-MT 278
           A+  F  +    G  PD +        TL+ G C    + + +  L  M E G     +T
Sbjct: 377 AEHMF-YLTPTKGCSPDIIT-----FNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTIT 430

Query: 279 FFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDE 338
           +  L    C  G +L  A+ +   M+   G  P+    N ++   C + +   A+++   
Sbjct: 431 YTTLIHGFCQVG-DLNAAQDLLQEMISS-GVCPNVVTCNTLLDGLCDNGKLKDALEMFKA 488

Query: 339 MV-----------YNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCR 387
           M            +NG  PD+QTYNIL   L+   K  EA  L+ EM     V +     
Sbjct: 489 MQKSKMDIDASRPFNGVEPDVQTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYS 548

Query: 388 AAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEK 447
           + +           A + +  M     S    T N L+ G C   M+ + ++    M ++
Sbjct: 549 SMIDGLCKQSRLDEATQMFDSMGSKSFSPDVVTFNTLITGYCKAGMVDDGLELFCEMGQR 608

Query: 448 GI 449
           GI
Sbjct: 609 GI 610



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 57/256 (22%), Positives = 97/256 (37%), Gaps = 18/256 (7%)

Query: 132 VLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ 191
           V +  T+ ++   +     +  A      M   G   +V   N+LL  +C +GK  DA +
Sbjct: 425 VANTITYTTLIHGFCQVGDLNAAQDLLQEMISSGVCPNVVTCNTLLDGLCDNGKLKDALE 484

Query: 192 FLRVVD------------GRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPD 239
             + +               ++PD  TY IL+ G   E     A++ + EM    G  PD
Sbjct: 485 MFKAMQKSKMDIDASRPFNGVEPDVQTYNILICGLINEGKFLEAEELYEEMP-HRGIVPD 543

Query: 240 NVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGM-TFFKLAFEECLTGQNLRGAEF 298
            +  Y S +  L K    + E       M  +  +P + TF  L    C  G    G E 
Sbjct: 544 TI-TYSSMIDGLCKQ-SRLDEATQMFDSMGSKSFSPDVVTFNTLITGYCKAGMVDDGLEL 601

Query: 299 IWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFL 358
                +G+ G   D   Y  +I  +   +    A+ +  EM+ +G +PD  T   +   L
Sbjct: 602 F--CEMGQRGIVADAITYITLIYGFRKVDNIDGALDIFQEMISSGVYPDTITIRNMLTGL 659

Query: 359 VKGRKLWEASGLFNEM 374
               +L  A  +  ++
Sbjct: 660 WSKEELERAVAMLEDL 675


>gi|225443946|ref|XP_002272135.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Vitis vinifera]
          Length = 733

 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 99/450 (22%), Positives = 191/450 (42%), Gaps = 14/450 (3%)

Query: 37  PTIKTLCEIIANTPS--PTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQ 94
           P ++ +C +I    +  P +E  L   L  +    V  VL+   +    A++FF W+  Q
Sbjct: 69  PLVREICRLIELRSAWNPKLEGELRHLLRSLKPRQVCAVLQLQ-TDERVALRFFYWADRQ 127

Query: 95  LNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSL-ATFASVFSSYVVADRVKD 153
              +H P  +  ++++L K  L       ++ M K  +      F  V  SY  A ++++
Sbjct: 128 WRYRHDPIVYYAMLEILSKTKLCQGAKRVLRLMAKRRIERRPEAFGYVMVSYSRAGKLRN 187

Query: 154 AITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLE 212
           A+    +M++ G + D+   N+ +  +    +   A +FL R+    I+P+  TY  L++
Sbjct: 188 AMRVLTMMQKAGIEPDLSICNTAIHVLVMGNRLDKAVRFLERMQIVEIEPNVITYNCLIK 247

Query: 213 GWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMM-ER 271
           G+     + +A +   EM  + G  PD +  Y   ++  L     I E    +++M+ + 
Sbjct: 248 GYCDLHRLEDAMELIAEMPFK-GCSPDKISYYT--VMGFLCKEKRIKEVRLLMEKMLKDS 304

Query: 272 GCNPGMTFFKLAFEECLT--GQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNET 329
              P    +   F   L+  G      EF+  A   R  FR D   Y+ ++  +C     
Sbjct: 305 NLLPDQVTYN-TFVHMLSKHGHGDEALEFLREAEERR--FRVDKVGYSAIVHSFCREGRM 361

Query: 330 GAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAA 389
             A ++++EM   G  PD+ TY  +   L + RK+ +A  +  +M K+    N  +  A 
Sbjct: 362 DKAKEIVNEMFSKGCIPDVVTYTSVINGLCQERKVDQAKKMLRQMYKHGCKPNTVSYTAL 421

Query: 390 VRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
           +     + +   A +      E+     + T ++L+ G        EA    + M +KG 
Sbjct: 422 LNGLCKNGNSLEAREMMNMSEEDWWIPNAITYSVLMHGFRREGKSSEACDLVREMIKKGF 481

Query: 450 QVTPFALSKLKQILIKARKEAVYEELLKKC 479
             TP  ++ L Q L +  K    +  +++C
Sbjct: 482 FPTPVEINLLIQSLCQEEKVDEAKRFMEQC 511



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 77/364 (21%), Positives = 147/364 (40%), Gaps = 44/364 (12%)

Query: 78  YSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSM-KKENVLSLA 136
           + H   A++F R  A +   +     ++ +V    +    D   + +  M  K  +  + 
Sbjct: 323 HGHGDEALEFLR-EAEERRFRVDKVGYSAIVHSFCREGRMDKAKEIVNEMFSKGCIPDVV 381

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           T+ SV +      +V  A      M ++GCK +  +  +LL+ +C++G +++A + + + 
Sbjct: 382 TYTSVINGLCQERKVDQAKKMLRQMYKHGCKPNTVSYTALLNGLCKNGNSLEAREMMNMS 441

Query: 197 DGRI-KPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
           +     P+  TY++L+ G+ +E   + A     EM I+ G+ P   P   + LI  L  C
Sbjct: 442 EEDWWIPNAITYSVLMHGFRREGKSSEACDLVREM-IKKGFFP--TPVEINLLIQSL--C 496

Query: 256 DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHM 315
               E V+  KR ME+  N G     + F   + G                         
Sbjct: 497 Q--EEKVDEAKRFMEQCLNNGCAVNVVNFTTVIHG------------------------- 529

Query: 316 YNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
                  +C  ++  AA+ LLD+M  +   PD+ TY  + + L K  ++ EA+ L  +M+
Sbjct: 530 -------FCQKDDLEAALSLLDDMYLSNKHPDVVTYTTIIDALGKKGRIEEATKLAMKML 582

Query: 376 KNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLP 435
           +   +      R  +  Y         +K  + M+     +     N ++  LC    L 
Sbjct: 583 RVGLIPTPVTYRTVIHQYCRMGRVEDLLKLLEKMLSRQ--ECRTAYNQVIEKLCSFGNLE 640

Query: 436 EAVK 439
           +A K
Sbjct: 641 QAYK 644


>gi|224086982|ref|XP_002308024.1| predicted protein [Populus trichocarpa]
 gi|222854000|gb|EEE91547.1| predicted protein [Populus trichocarpa]
          Length = 789

 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 76/278 (27%), Positives = 129/278 (46%), Gaps = 8/278 (2%)

Query: 102 YAWNLVVD-LLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDV 160
           Y +N+++D L+ KN L  A+    + MK   + ++ATF+ +      +  VKDA+  FD 
Sbjct: 162 YTYNMILDVLIQKNFLLLALTVYTRMMKLNCLPNVATFSILIDGLCKSGNVKDALHLFDE 221

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERD 219
           M Q G   D F    ++S +CR  +  DA++ F ++ D  + PD  T   LL G+    D
Sbjct: 222 MTQRGILPDAFTYCVVISGLCRSKRVDDAYRLFDKMKDSGVGPDFVTCNALLNGFCM-LD 280

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSL-KRMMERGCNPGMT 278
             +   +   +  + G+  D V  Y   +  L +     YE V  L ++M+E    P + 
Sbjct: 281 RVDEAFSLLRLFEKDGYVLD-VRGYSCLIRGLFRA--KRYEDVQLLYRKMIEDNVKPDVY 337

Query: 279 FFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDE 338
            + +  +       +R A  +   M    G  PDT  YN++I  +C       A  L  E
Sbjct: 338 LYTIMMKGLAEAGKVRDALELLNEMT-ESGVVPDTVCYNVLIKGFCDMGLLSEARSLQLE 396

Query: 339 MVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK 376
           +  +  FP+++TY+IL   + +     +A  +FNEM K
Sbjct: 397 ISRHDCFPNVKTYSILISGMCRNGLTRDAQEIFNEMEK 434



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 73/296 (24%), Positives = 125/296 (42%), Gaps = 30/296 (10%)

Query: 107 VVDLLGKNCLFDAMWDA---------IKSMKKENVL-SLATFASVFSSYVVADRVKDAIT 156
           V+D+ G +CL   ++ A          + M ++NV   +  +  +      A +V+DA+ 
Sbjct: 298 VLDVRGYSCLIRGLFRAKRYEDVQLLYRKMIEDNVKPDVYLYTIMMKGLAEAGKVRDALE 357

Query: 157 TFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQF-LRVVDGRIKPDNDTYAILLEGWE 215
             + M + G   D    N L+   C  G   +A    L +      P+  TY+IL+ G  
Sbjct: 358 LLNEMTESGVVPDTVCYNVLIKGFCDMGLLSEARSLQLEISRHDCFPNVKTYSILISGMC 417

Query: 216 KERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNP 275
           +     +A++ F EM  ++G  P  V  ++S +  L K   G  E  + L   ME G NP
Sbjct: 418 RNGLTRDAQEIFNEME-KLGCYPSAV-TFNSLIDGLCK--TGQLEKAHLLFYKMEIGRNP 473

Query: 276 GMTFFKLA--------------FEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMIS 321
            + F +L+                E L    L    +     +   G  P  + YN++++
Sbjct: 474 SL-FLRLSQGPSHVLDSASLQKMVEQLCDSGLIHKAYRILMQLADSGDAPGIYTYNILVN 532

Query: 322 LYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKN 377
            +C       A KL  EM + G  PD  TY  L   L++ ++  +A  +F++M KN
Sbjct: 533 GFCKLGNFNGAYKLFREMQFKGLSPDTVTYGTLINGLLRFQREEDAYKVFDQMEKN 588



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 123/293 (41%), Gaps = 21/293 (7%)

Query: 154 AITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLE 212
           A+T +  M +  C  +V   + L+  +C+ G   DA      +  R I PD  TY +++ 
Sbjct: 180 ALTVYTRMMKLNCLPNVATFSILIDGLCKSGNVKDALHLFDEMTQRGILPDAFTYCVVIS 239

Query: 213 GWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERG 272
           G  + + V +A + F +M  + G  PD V    + L+      D + E  + L+   + G
Sbjct: 240 GLCRSKRVDDAYRLFDKMK-DSGVGPDFVTC--NALLNGFCMLDRVDEAFSLLRLFEKDG 296

Query: 273 CNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAA 332
               +  +          +     + ++  M+     +PD ++Y +M+     + +   A
Sbjct: 297 YVLDVRGYSCLIRGLFRAKRYEDVQLLYRKMI-EDNVKPDVYLYTIMMKGLAEAGKVRDA 355

Query: 333 MKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM--------VKNENVLNHE 384
           ++LL+EM  +G  PD   YN+L +       L EA  L  E+        VK  ++L   
Sbjct: 356 LELLNEMTESGVVPDTVCYNVLIKGFCDMGLLSEARSLQLEISRHDCFPNVKTYSILISG 415

Query: 385 NCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEA 437
            CR  +     + D   A + +  M +  C   + T N L+ GLC    L +A
Sbjct: 416 MCRNGL-----TRD---AQEIFNEMEKLGCYPSAVTFNSLIDGLCKTGQLEKA 460



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 62/253 (24%), Positives = 108/253 (42%), Gaps = 4/253 (1%)

Query: 197 DGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD 256
           +G IK  ND + +L++ + K      A +TFG M  +    PD V  Y+  L  L++  +
Sbjct: 119 NGGIKVHNDAFFVLIKVYLKMGLTDKAMETFGSMR-DFDCTPD-VYTYNMILDVLIQK-N 175

Query: 257 GIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMY 316
            +   +    RMM+  C P +  F +  +      N++ A  ++  M  R G  PD   Y
Sbjct: 176 FLLLALTVYTRMMKLNCLPNVATFSILIDGLCKSGNVKDALHLFDEMTQR-GILPDAFTY 234

Query: 317 NMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK 376
            ++IS  C S     A +L D+M  +G  PD  T N L        ++ EA  L     K
Sbjct: 235 CVVISGLCRSKRVDDAYRLFDKMKDSGVGPDFVTCNALLNGFCMLDRVDEAFSLLRLFEK 294

Query: 377 NENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPE 436
           +  VL+       +R    +         ++ MIE++         +++ GL +   + +
Sbjct: 295 DGYVLDVRGYSCLIRGLFRAKRYEDVQLLYRKMIEDNVKPDVYLYTIMMKGLAEAGKVRD 354

Query: 437 AVKYAKGMAEKGI 449
           A++    M E G+
Sbjct: 355 ALELLNEMTESGV 367



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 78/328 (23%), Positives = 139/328 (42%), Gaps = 37/328 (11%)

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERD 219
           + ++ C  +V   + L+S +CR+G T DA +    ++     P   T+  L++G  K   
Sbjct: 397 ISRHDCFPNVKTYSILISGMCRNGLTRDAQEIFNEMEKLGCYPSAVTFNSLIDGLCKTGQ 456

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGM-- 277
           +  A   F +M  E+G +P       S  + L +G   + ++  SL++M+E+ C+ G+  
Sbjct: 457 LEKAHLLFYKM--EIGRNP-------SLFLRLSQGPSHVLDSA-SLQKMVEQLCDSGLIH 506

Query: 278 -------------------TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNM 318
                              T+  L    C  G N  GA  ++  M  + G  PDT  Y  
Sbjct: 507 KAYRILMQLADSGDAPGIYTYNILVNGFCKLG-NFNGAYKLFREMQFK-GLSPDTVTYGT 564

Query: 319 MISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNE 378
           +I+          A K+ D+M  NG  PD   Y  +  ++ +  +L  A  L+ + ++N 
Sbjct: 565 LINGLLRFQREEDAYKVFDQMEKNGCTPDAAVYRTMMTWMCRRMELPRAFSLWLKYLRNI 624

Query: 379 NVLNHENCRAAVRVYMDSDDPYVAIKFWKYM-IENHCSDLSETGNLLVAGLCDMHMLPEA 437
                E  + A+  Y +  +   A++    M  + +  DL      L+ GLC    + EA
Sbjct: 625 RSQEDEAIK-AIEGYFEKQEVEKAVRGLLEMDFKLNDFDLGPYAIWLI-GLCQTRRVGEA 682

Query: 438 VKYAKGMAEKGIQVTPFALSKLKQILIK 465
           +K    + E  + +TP    KL   L+K
Sbjct: 683 LKIFLILEEYKVVITPPCCVKLIYFLLK 710



 Score = 42.7 bits (99), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 36/167 (21%), Positives = 73/167 (43%), Gaps = 8/167 (4%)

Query: 67  QETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSP--YAWNLVVDLLGKNCLFDAMWDAI 124
           Q+ VEQ+      H     K +R      +   +P  Y +N++V+   K   F+  +   
Sbjct: 493 QKMVEQLCDSGLIH-----KAYRILMQLADSGDAPGIYTYNILVNGFCKLGNFNGAYKLF 547

Query: 125 KSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRD 183
           + M+ + +     T+ ++ +  +   R +DA   FD ME+ GC  D     ++++ +CR 
Sbjct: 548 REMQFKGLSPDTVTYGTLINGLLRFQREEDAYKVFDQMEKNGCTPDAAVYRTMMTWMCRR 607

Query: 184 GKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEM 230
            +   A+         I+   D     +EG+ ++++V  A +   EM
Sbjct: 608 MELPRAFSLWLKYLRNIRSQEDEAIKAIEGYFEKQEVEKAVRGLLEM 654



 Score = 40.4 bits (93), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 76/176 (43%), Gaps = 16/176 (9%)

Query: 311 PDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGL 370
           PD + YNM++ +    N    A+ +   M+     P++ T++IL + L K   + +A  L
Sbjct: 159 PDVYTYNMILDVLIQKNFLLLALTVYTRMMKLNCLPNVATFSILIDGLCKSGNVKDALHL 218

Query: 371 FNEMVK--------NENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGN 422
           F+EM +           V+    CR+  RV    DD Y   + +  M ++       T N
Sbjct: 219 FDEMTQRGILPDAFTYCVVISGLCRSK-RV----DDAY---RLFDKMKDSGVGPDFVTCN 270

Query: 423 LLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKK 478
            L+ G C +  + EA    +   + G  +     S L + L +A++    + L +K
Sbjct: 271 ALLNGFCMLDRVDEAFSLLRLFEKDGYVLDVRGYSCLIRGLFRAKRYEDVQLLYRK 326


>gi|225447562|ref|XP_002269867.1| PREDICTED: pentatricopeptide repeat-containing protein At4g26680,
           mitochondrial-like [Vitis vinifera]
          Length = 616

 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 104/420 (24%), Positives = 175/420 (41%), Gaps = 33/420 (7%)

Query: 84  AVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL---------- 133
           + +FF W   Q  +  +   +++++ +L KN  F +    +K +     +          
Sbjct: 174 SFEFFNWVKAQNPNCQTLETYSIILHILTKNHKFKSAESVLKGILGSGSIDHPSKLFEAI 233

Query: 134 ---------SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDG 184
                    S   F S+F +Y    ++++AI  F  M+ YG    V + N+ +SA     
Sbjct: 234 LYSYRICDSSPCVFDSLFKTYAQMKKLRNAIDVFCQMKDYGFLPRVESCNAYISASISLQ 293

Query: 185 KTIDAWQFLRVVDG-RIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPA 243
           +   A  F R +   RI P+  T  +++  + K   +  A + F  M   +G+ P  + +
Sbjct: 294 RGDIALTFYREMQRYRISPNVYTLNMVMCAFCKWGKLEKAIEVFKRMET-MGFSP-TITS 351

Query: 244 YDSYLITLLKG-CD-GIYETVNSLKRMMER-GCNPGMTFFKLAFEECLTGQNLRGAEFIW 300
           Y+    TL+ G C+ G+  +   LK +ME+ G  P    F         G  L  A  I+
Sbjct: 352 YN----TLIAGYCNKGLLNSGMKLKILMEKNGVRPDDVTFNTLINGFCRGGKLHEANKIF 407

Query: 301 GAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVK 360
             M       P+T  YN +I+ Y     +    +L DEM+ NG   DI TYN L   L  
Sbjct: 408 SEMKAN-DVVPNTITYNTLINGYSQVGNSEMGGRLHDEMLRNGIKADILTYNALILGLCM 466

Query: 361 GRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSET 420
             +  +A+ L  E+ +   V N     A +       +   A + +K MI + C     T
Sbjct: 467 EGRTKKAAYLVKELDRENLVPNSSTFSALITGQCVRKNSERAFQLYKSMIRSGCHPNYHT 526

Query: 421 GNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKCK 480
             +L++  C       AV+  + M+E+ I      LS+L + L  + KE   E  LK CK
Sbjct: 527 FKMLISTFCKNEDFDGAVEVVREMSERSIAPDSDTLSELCRGLWLSGKE---ELALKLCK 583


>gi|147768816|emb|CAN62673.1| hypothetical protein VITISV_031897 [Vitis vinifera]
          Length = 653

 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 62/244 (25%), Positives = 114/244 (46%), Gaps = 5/244 (2%)

Query: 136 ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRV 195
            TF ++     V  ++ +A+  FD M   G + +V    +L++ +C+ G T  A + LR 
Sbjct: 141 TTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRS 200

Query: 196 VD-GRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG 254
           ++ G  +P+   ++ L++   K+R V  A   F EM+ + G  P N+  Y+S +  L K 
Sbjct: 201 MEQGNCQPNVVVFSTLIDSLCKDRQVTEAFNIFSEMITK-GISP-NIVTYNSLIHGLCKL 258

Query: 255 CDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTH 314
           C+  + T   +  M++    P +       +       +  A  +   M+ R G  P+  
Sbjct: 259 CEWKHVT-TLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHR-GVEPNVV 316

Query: 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
            YN ++  +C  NE   A+K+ D MV+     ++ +YN L     K + + +A  LF EM
Sbjct: 317 TYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEM 376

Query: 375 VKNE 378
            + E
Sbjct: 377 SRQE 380



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 79/344 (22%), Positives = 151/344 (43%), Gaps = 13/344 (3%)

Query: 114 NCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFAL 173
           N L +A+    + + K+   S   F  + +S          ++    M+ +G   DV+ L
Sbjct: 49  NTLDEALSTFNRMLHKQPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTL 108

Query: 174 NSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVI 232
             +++++C   +   A+  L +++    +PD  T+  L+ G   E  +  A   F +M+ 
Sbjct: 109 AIVINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIG 168

Query: 233 EVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLK--RMMERG-CNPGMTFFKLAFEECLT 289
           E G+ P NV  Y     TL+ G   +  T  +++  R ME+G C P +  F    +    
Sbjct: 169 E-GFQP-NVVTYG----TLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCK 222

Query: 290 GQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQ 349
            + +  A  I+  M+ + G  P+   YN +I   C   E      L++EMV +   PD+ 
Sbjct: 223 DRQVTEAFNIFSEMITK-GISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVF 281

Query: 350 TYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYM 409
           T N + + L K   + EA  + + M+      N     A +  +   ++  VA+K +  M
Sbjct: 282 TLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTM 341

Query: 410 IENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTP 453
           +   C     + N L+ G C +  + +A+   + M+ +  ++TP
Sbjct: 342 VHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQ--ELTP 383



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 75/332 (22%), Positives = 129/332 (38%), Gaps = 43/332 (12%)

Query: 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASVFSSYVVADRVKDAITTFDV 160
           +  N VVD L K  +     D +  M    V  ++ T+ ++   + + + V  A+  FD 
Sbjct: 281 FTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDT 340

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL--RVVDGRIKPDNDTYAILLEGWEKER 218
           M    C  +V + N+L++  C+  +++D   +L   +    + P+  TY  L+ G     
Sbjct: 341 MVHKDCVANVISYNTLINGYCKI-QSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVG 399

Query: 219 DVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMT 278
            + +A   F EMV                                       RG  P + 
Sbjct: 400 RLQDAISLFHEMV--------------------------------------ARGQIPDLV 421

Query: 279 FFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDE 338
            ++   +     ++L  A  +  A+ G   + PD  +Y  ++   C + E   A  L   
Sbjct: 422 TYRTLSDYLCKNRHLDKAMALLKAIEGS-NWDPDIQIYTTILDGMCRAGELEDARDLFSN 480

Query: 339 MVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDD 398
           +   G  P++ TYNI+   L K   L EAS LF+EM KN    N        R ++ +++
Sbjct: 481 LSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGFLRNNE 540

Query: 399 PYVAIKFWKYMIENHCSDLSETGNLLVAGLCD 430
               I+  + M+    S    T  LLV  L D
Sbjct: 541 ALRTIELLEEMLARGFSVDVSTTTLLVGMLSD 572



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 83/372 (22%), Positives = 147/372 (39%), Gaps = 55/372 (14%)

Query: 124 IKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICR 182
           ++SM++ N   ++  F+++  S     +V +A   F  M   G   ++   NSL+  +C+
Sbjct: 198 LRSMEQGNCQPNVVVFSTLIDSLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCK 257

Query: 183 DGKTIDAWQFL-----RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWD 237
               +  W+ +      +VD +I PD  T   +++   KE  VA A     +M+I  G +
Sbjct: 258 ----LCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVV-DMMIHRGVE 312

Query: 238 PDNVPAYDSYLITLLKG-C--DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLR 294
           P NV  Y++    L+ G C  + +   V     M+ + C   +  +          Q++ 
Sbjct: 313 P-NVVTYNA----LMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVD 367

Query: 295 GAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNIL 354
            A +++  M  R    P+T  YN +I   C+      A+ L  EMV  G  PD+ TY  L
Sbjct: 368 KAMYLFEEM-SRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTL 426

Query: 355 FEFLVKGRKLWEASGLFNEM--------VKNENVLNHENCRA-----AVRVYMDSDDPYV 401
            ++L K R L +A  L   +        ++    +    CRA     A  ++ +     +
Sbjct: 427 SDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGL 486

Query: 402 AIKFWKY----------------------MIENHCSDLSETGNLLVAGLCDMHMLPEAVK 439
               W Y                      M +N CS    T NL+  G    +     ++
Sbjct: 487 QPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGFLRNNEALRTIE 546

Query: 440 YAKGMAEKGIQV 451
             + M  +G  V
Sbjct: 547 LLEEMLARGFSV 558


>gi|115482710|ref|NP_001064948.1| Os10g0495100 [Oryza sativa Japonica Group]
 gi|22128714|gb|AAM92826.1| putative chloroplast RNA processing protein [Oryza sativa Japonica
           Group]
 gi|31432837|gb|AAP54424.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113639557|dbj|BAF26862.1| Os10g0495100 [Oryza sativa Japonica Group]
 gi|125575261|gb|EAZ16545.1| hypothetical protein OsJ_32018 [Oryza sativa Japonica Group]
          Length = 461

 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 91/377 (24%), Positives = 155/377 (41%), Gaps = 13/377 (3%)

Query: 81  PGPAVKFFRWSAYQLNDKHSP--YAWNLVVDLLGKNCLFDAMWDAIKS-MKKENVLSLAT 137
           P  AV  +   A    D+ +P  Y +++++    +    D  + A+ + +KK   +   T
Sbjct: 62  PAAAVSRYNRMARAGADEVTPNLYTYSVLIGCCCRAGRLDLGFAALGNVIKKGFRVEAIT 121

Query: 138 FASVFSSYVVADRVKDAI-TTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           F  +        R  DA+      M Q GC  +VF+   LL  +C + ++ +A + L+++
Sbjct: 122 FTPLLKGLCADKRTSDAMDIVLCRMTQLGCIPNVFSCTILLKGLCDENRSQEALELLQMM 181

Query: 197 ---DGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLK 253
               G   PD   Y  ++ G+ KE D   A  T+ EM  + G  PD V  Y S +  L K
Sbjct: 182 PDDGGDCPPDVVLYNTVINGFFKEGDPDKAYATYHEM-FDQGILPD-VVTYSSIIAALCK 239

Query: 254 GCDGIYETVNSLKRMMERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD 312
               + + +  L  M++ G  P   T+  +    C +GQ      F+   M+   G  PD
Sbjct: 240 A-QAMDKAMEVLNTMVKNGVMPNCRTYNSIVHGYCSSGQLTEAIGFL--KMMCSDGVEPD 296

Query: 313 THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFN 372
               N+++   C +     A K+ + M   G  PDI TY  L +       L E   L +
Sbjct: 297 VVTCNLLMDYLCKNRRCTEARKIFNSMTKCGLKPDITTYCTLLQGYATKGALVEMHDLLD 356

Query: 373 EMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMH 432
            MV N    NH      +  Y   +    A+  +  M +   S  +     ++  LC + 
Sbjct: 357 LMVWNGIQPNHHVFNILICAYAKQEKVDEAMLVFSKMRQQGLSPNAVNYRTVIDVLCKLG 416

Query: 433 MLPEAVKYAKGMAEKGI 449
            + +AV   K M  +G+
Sbjct: 417 RVYDAVLTLKQMINEGL 433



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 79/312 (25%), Positives = 124/312 (39%), Gaps = 24/312 (7%)

Query: 152 KDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDG---RIKPDNDTYA 208
           +DA   FD + + G    ++ LN  L  + R        ++ R+       + P+  TY+
Sbjct: 29  EDARHVFDELLRRGKGATIYGLNRALDDVARHSPAAAVSRYNRMARAGADEVTPNLYTYS 88

Query: 209 ILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNS---- 264
           +L+    +   +       G  VI+ G+  + +         LLKG      T ++    
Sbjct: 89  VLIGCCCRAGRLDLGFAALGN-VIKKGFRVEAIT-----FTPLLKGLCADKRTSDAMDIV 142

Query: 265 LKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIG--FRPDTHMYNMMISL 322
           L RM + GC P + F      + L  +N          M+   G    PD  +YN +I+ 
Sbjct: 143 LCRMTQLGCIPNV-FSCTILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVLYNTVING 201

Query: 323 YCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLN 382
           +    +   A     EM   G  PD+ TY+ +   L K + + +A  + N MVKN  + N
Sbjct: 202 FFKEGDPDKAYATYHEMFDQGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPN 261

Query: 383 HENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSE----TGNLLVAGLCDMHMLPEAV 438
                + V  Y  S     AI F K M    CSD  E    T NLL+  LC      EA 
Sbjct: 262 CRTYNSIVHGYCSSGQLTEAIGFLKMM----CSDGVEPDVVTCNLLMDYLCKNRRCTEAR 317

Query: 439 KYAKGMAEKGIQ 450
           K    M + G++
Sbjct: 318 KIFNSMTKCGLK 329



 Score = 43.9 bits (102), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 46/214 (21%), Positives = 87/214 (40%), Gaps = 40/214 (18%)

Query: 104 WNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVME 162
           ++ ++  L K    D   + + +M K  V+ +  T+ S+   Y  + ++ +AI    +M 
Sbjct: 230 YSSIIAALCKAQAMDKAMEVLNTMVKNGVMPNCRTYNSIVHGYCSSGQLTEAIGFLKMMC 289

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWE------ 215
             G + DV   N L+  +C++ +  +A + F  +    +KPD  TY  LL+G+       
Sbjct: 290 SDGVEPDVVTCNLLMDYLCKNRRCTEARKIFNSMTKCGLKPDITTYCTLLQGYATKGALV 349

Query: 216 -----------------------------KERDVANAKKTFGEMVIEVGWDPDNVPAYDS 246
                                        K+  V  A   F +M  + G  P+ V  Y +
Sbjct: 350 EMHDLLDLMVWNGIQPNHHVFNILICAYAKQEKVDEAMLVFSKMR-QQGLSPNAV-NYRT 407

Query: 247 YLITLLKGCDGIYETVNSLKRMMERGCNPGMTFF 280
            +  L K    +Y+ V +LK+M+  G  P +  +
Sbjct: 408 VIDVLCK-LGRVYDAVLTLKQMINEGLTPDIIVY 440


>gi|356499079|ref|XP_003518371.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Glycine max]
          Length = 615

 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/245 (27%), Positives = 107/245 (43%), Gaps = 15/245 (6%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRV 195
           TF+++ +      R+ +    FD M   G   +     +L+   C+ GK   A + F  +
Sbjct: 320 TFSALINGLCKEGRLDEGSLLFDEMCGRGLVPNGVTFTTLIDGQCKGGKVDLALKNFQMM 379

Query: 196 VDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
           +   ++PD  TY  L+ G  K  D+  A++   EM    G  PD +        TL+ GC
Sbjct: 380 LAQGVRPDLVTYNALINGLCKVGDLKEARRLVNEMTAS-GLKPDKI-----TFTTLIDGC 433

Query: 256 --DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRI---GFR 310
             DG  E+   +KR M      G+    +AF   ++G    G     G M+  +   GF+
Sbjct: 434 CKDGDMESALEIKRRM---VEEGIELDDVAFTALISGLCREGRVHDAGRMLTDMLSAGFK 490

Query: 311 PDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGL 370
           PD   Y M+I  +C   +     KLL EM  +G  P + TYN L   L K  ++  A  L
Sbjct: 491 PDDPTYTMVIDCFCKKGDVKMGFKLLKEMQSDGHVPGVVTYNALMNGLCKQGQMKNAKML 550

Query: 371 FNEMV 375
            + M+
Sbjct: 551 LDAML 555



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 83/322 (25%), Positives = 135/322 (41%), Gaps = 19/322 (5%)

Query: 138 FASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICR--DGKTIDAWQ-FLR 194
           F ++ S+YV +    DA+  F ++ +      +    +LL  + R    +   +W  +L 
Sbjct: 179 FDALISAYVDSGFTPDAVQCFRLVTKNKFPVPIRGCENLLRRVVRLRPVEIERSWALYLE 238

Query: 195 VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG 254
           V+D    P    + +L+ G+ K  DV NA+  F E + + G  P  V +++    TL+ G
Sbjct: 239 VLDSGYPPKIYFFNVLMHGFCKAGDVGNARLVFDE-IPKRGLRP-TVVSFN----TLISG 292

Query: 255 C--DGIYETVNSLKRMMERG--CNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFR 310
           C   G  E    LK +ME    C    TF  L    C  G+ L     ++  M GR G  
Sbjct: 293 CCKSGDVEEGFRLKGVMESEGVCPDVFTFSALINGLCKEGR-LDEGSLLFDEMCGR-GLV 350

Query: 311 PDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGL 370
           P+   +  +I   C   +   A+K    M+  G  PD+ TYN L   L K   L EA  L
Sbjct: 351 PNGVTFTTLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEARRL 410

Query: 371 FNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIEN--HCSDLSETGNLLVAGL 428
            NEM  +    +       +       D   A++  + M+E      D++ T   L++GL
Sbjct: 411 VNEMTASGLKPDKITFTTLIDGCCKDGDMESALEIKRRMVEEGIELDDVAFTA--LISGL 468

Query: 429 CDMHMLPEAVKYAKGMAEKGIQ 450
           C    + +A +    M   G +
Sbjct: 469 CREGRVHDAGRMLTDMLSAGFK 490


>gi|414875533|tpg|DAA52664.1| TPA: hypothetical protein ZEAMMB73_493958 [Zea mays]
          Length = 688

 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 92/370 (24%), Positives = 154/370 (41%), Gaps = 10/370 (2%)

Query: 94  QLNDKHSPYAWN-LVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRV 151
           +L+ K S + +N L+  LL + C+   ++D    M+ E ++ ++ T+ ++    + +  V
Sbjct: 268 RLSKKASSFTYNPLITGLLARGCV-KKVYDLQLEMENEGIMPTVVTYNAMIHGLLQSGLV 326

Query: 152 KDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAIL 210
           + A   F  M   G   DV   NSLL+  C+ G   +A   F  +    + P   TY I 
Sbjct: 327 EAAQVKFAEMRAMGLLPDVITYNSLLNGYCKAGNLKEALLLFGDLRRAGLAPTVLTYNIR 386

Query: 211 LEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMME 270
           ++G+ +  D+  A+    EM  E G  P NV  Y   +   L  C  +         M+ 
Sbjct: 387 IDGYCRLGDLEEARILKEEMG-EQGCLP-NVCTYTILMKGSLNVCS-LAMAREFFDEMLS 443

Query: 271 RGCNPGMTFFKLAF-EECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNET 329
           +G  P    +      E + G   R  E     M+   G   DT  YN++I   C +   
Sbjct: 444 KGLQPDCFAYNTRICAELILGDIARALELREVLMLE--GISSDTVTYNILIHGLCKTGNL 501

Query: 330 GAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAA 389
             A +L  +MV NG  PD  TY  L     +   L EA  +FN M+ +  + +       
Sbjct: 502 KDAKELQMKMVSNGLQPDCITYTCLIHAHCERGLLREARKIFNNMISDGLLPSAVTFTVI 561

Query: 390 VRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
           +  Y    + Y A  +++ M+E        T N+L+  LC M     A  +   M E+G+
Sbjct: 562 IHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRMGRTQLASHHFHEMLERGL 621

Query: 450 QVTPFALSKL 459
               +  + L
Sbjct: 622 VANKYTYTLL 631



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/215 (24%), Positives = 93/215 (43%), Gaps = 15/215 (6%)

Query: 151 VKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQF-LRVVDGRIKPDNDTYAI 209
           +  A+   +V+   G   D    N L+  +C+ G   DA +  +++V   ++PD  TY  
Sbjct: 466 IARALELREVLMLEGISSDTVTYNILIHGLCKTGNLKDAKELQMKMVSNGLQPDCITYTC 525

Query: 210 LLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC--DGIYETVNSLKR 267
           L+    +   +  A+K F  M+ + G  P  V    ++ + +   C    +Y      ++
Sbjct: 526 LIHAHCERGLLREARKIFNNMISD-GLLPSAV----TFTVIIHAYCRRGNLYSAYGWFRK 580

Query: 268 MMERGCNPG-MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYS 326
           M+E G  P  +T+  L    C  G+  + A   +  M+ R G   + + Y ++I   C  
Sbjct: 581 MLEEGVEPNEITYNVLIHALCRMGRT-QLASHHFHEMLER-GLVANKYTYTLLIDGNCKV 638

Query: 327 NETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKG 361
                AM+   EM  NG  PD  T+    + LVKG
Sbjct: 639 GNWEDAMRFYFEMHQNGIHPDYLTH----KALVKG 669



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 58/224 (25%), Positives = 89/224 (39%), Gaps = 11/224 (4%)

Query: 158 FDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV--DGRIKPDNDTYAILLEGWE 215
           FD M   G + D FA N+ + A    G    A +   V+  +G I  D  TY IL+ G  
Sbjct: 438 FDEMLSKGLQPDCFAYNTRICAELILGDIARALELREVLMLEG-ISSDTVTYNILIHGLC 496

Query: 216 KERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDG--IYETVNSLKRMMERGC 273
           K  ++ +AK+   +MV   G  PD +    +Y   +   C+   + E       M+  G 
Sbjct: 497 KTGNLKDAKELQMKMVSN-GLQPDCI----TYTCLIHAHCERGLLREARKIFNNMISDGL 551

Query: 274 NPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAM 333
            P    F +         NL  A + W   +   G  P+   YN++I   C    T  A 
Sbjct: 552 LPSAVTFTVIIHAYCRRGNLYSA-YGWFRKMLEEGVEPNEITYNVLIHALCRMGRTQLAS 610

Query: 334 KLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKN 377
               EM+  G   +  TY +L +   K     +A   + EM +N
Sbjct: 611 HHFHEMLERGLVANKYTYTLLIDGNCKVGNWEDAMRFYFEMHQN 654


>gi|356540349|ref|XP_003538652.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Glycine max]
          Length = 1024

 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 100/491 (20%), Positives = 183/491 (37%), Gaps = 116/491 (23%)

Query: 64  RVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKN--------- 114
           R+S+  V +V+     HP   V+FF W++ Q+   H+P  +N +++LL  N         
Sbjct: 97  RLSEPLVVEVMNL-VKHPEFCVEFFLWASRQIGYSHTPVVYNALIELLCCNAVNNDRVSH 155

Query: 115 ------------------------CLFDAMWD-AIKSMKKENVL----SLATFASVFSSY 145
                                   C  + MW+ A++ + +        S  T+ ++   +
Sbjct: 156 KFLMQIRDDDRELLRKLLNFLIQKCCRNGMWNVALEELGRLKDFGYKASPTTYNALIQVF 215

Query: 146 VVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL------------ 193
           + AD++  A      M   G + D   L     ++C+ G+  DA   L            
Sbjct: 216 LRADKLDTAFLVHREMSNSGFRMDGCTLGCFAYSLCKAGRCGDALSLLEKEEFVPDTVFY 275

Query: 194 -RVVDG---------------RIK-----PDNDTYAILLEGWEKERDVANAKKTFGEMVI 232
            R+V G               R++     P+  TY ILL G   +  +   K+    M+ 
Sbjct: 276 NRMVSGLCEASLFQEAMDILDRMRSISCIPNVVTYRILLSGCLGKGQLGRCKRILSMMMT 335

Query: 233 EVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQN 292
           E G  P N   ++S +    K  D  Y      K+M++ GC PG   + +      + + 
Sbjct: 336 E-GCYP-NREMFNSLVHAYCKSRDYSY-AYKLFKKMIKCGCQPGYLLYNIFIGSICSNEE 392

Query: 293 LRGAEFI------------WGAMVGRI----------------------------GFRPD 312
           L G++ +             G ++ ++                            GF PD
Sbjct: 393 LPGSDLLELAEKAYSEMLDLGVVLNKVNVSNFARCLCGAGKFDKAFEIICEMMSKGFVPD 452

Query: 313 THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFN 372
              Y+ +I   C +++   A  L +EM  NG  P + TY IL +   K   + +A   F+
Sbjct: 453 DSTYSKVIGFLCDASKVEKAFLLFEEMKKNGIVPSVYTYTILIDSFCKAGLIQQARNWFD 512

Query: 373 EMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMH 432
           EM+++    N     + +  Y+ +   + A K ++ M+         T   L+ G C   
Sbjct: 513 EMLRDNCTPNVVTYTSLIHAYLKARKVFDANKLFEMMLLEGSKPNVVTYTALIDGHCKAG 572

Query: 433 MLPEAVK-YAK 442
            + +A + YA+
Sbjct: 573 QIDKACQIYAR 583



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 80/335 (23%), Positives = 131/335 (39%), Gaps = 27/335 (8%)

Query: 117 FDAMWDAI-KSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNS 175
           FD  ++ I + M K  V   +T++ V      A +V+ A   F+ M++ G    V+    
Sbjct: 434 FDKAFEIICEMMSKGFVPDDSTYSKVIGFLCDASKVEKAFLLFEEMKKNGIVPSVYTYTI 493

Query: 176 LLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEV 234
           L+ + C+ G    A   F  ++     P+  TY  L+  + K R V +A K F  M++E 
Sbjct: 494 LIDSFCKAGLIQQARNWFDEMLRDNCTPNVVTYTSLIHAYLKARKVFDANKLFEMMLLE- 552

Query: 235 GWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGM-TFFKLAFEECLTGQNL 293
           G  P NV  Y + +    K    I +      RM     +  +  +FKL   +C T    
Sbjct: 553 GSKP-NVVTYTALIDGHCKA-GQIDKACQIYARMQGDIESSDIDMYFKLDDNDCET---- 606

Query: 294 RGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNI 353
                            P+   Y  ++   C +N    A +LLD M  NG  P+   Y+ 
Sbjct: 607 -----------------PNIITYGALVDGLCKANRVEEAHELLDTMSVNGCEPNQIVYDA 649

Query: 354 LFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENH 413
           L +   K  KL  A  +F +M +     N     + +          + +K    M+EN 
Sbjct: 650 LIDGFCKTGKLENAQEVFVKMSERGYCPNLYTYSSLINSLFKEKRLDLVLKVLSKMLENS 709

Query: 414 CSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448
           C+        ++ GLC +    EA +    M E G
Sbjct: 710 CTPNVVIYTDMIDGLCKVGKTEEAYRLMLKMEEVG 744



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 63/257 (24%), Positives = 113/257 (43%), Gaps = 25/257 (9%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-F 192
           ++ T+ ++      A+RV++A    D M   GC+ +    ++L+   C+ GK  +A + F
Sbjct: 608 NIITYGALVDGLCKANRVEEAHELLDTMSVNGCEPNQIVYDALIDGFCKTGKLENAQEVF 667

Query: 193 LRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
           +++ +    P+  TY+ L+    KE+ +    K   +M +E    P NV  Y   +  L 
Sbjct: 668 VKMSERGYCPNLYTYSSLINSLFKEKRLDLVLKVLSKM-LENSCTP-NVVIYTDMIDGLC 725

Query: 253 KGCDGIYETVNSLKRMMERGCNPGMT--------FFKLA-FEECLTGQNLRGAEFIWGAM 303
           K      E    + +M E GC P +         F K+   E+CL          ++  M
Sbjct: 726 K-VGKTEEAYRLMLKMEEVGCYPNVITYTAMIDGFGKIGKIEQCLE---------LYRDM 775

Query: 304 VGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRK 363
             + G  P+   Y ++I+  C +     A +LLDEM        I +Y  + E     R+
Sbjct: 776 CSK-GCAPNFITYRVLINHCCSTGLLDEAHRLLDEMKQTYWPRHISSYRKIIEGF--NRE 832

Query: 364 LWEASGLFNEMVKNENV 380
              + GL +E+ +NE+V
Sbjct: 833 FITSIGLLDELSENESV 849



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 67/166 (40%), Gaps = 6/166 (3%)

Query: 309 FRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEAS 368
           F PDT  YN M+S  C ++    AM +LD M      P++ TY IL    +   +L    
Sbjct: 268 FVPDTVFYNRMVSGLCEASLFQEAMDILDRMRSISCIPNVVTYRILLSGCLGKGQLGRCK 327

Query: 369 GLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGL 428
            + + M+      N E   + V  Y  S D   A K +K MI+  C       N+ +  +
Sbjct: 328 RILSMMMTEGCYPNREMFNSLVHAYCKSRDYSYAYKLFKKMIKCGCQPGYLLYNIFIGSI 387

Query: 429 CDMHMLPE------AVKYAKGMAEKGIQVTPFALSKLKQILIKARK 468
           C    LP       A K    M + G+ +    +S   + L  A K
Sbjct: 388 CSNEELPGSDLLELAEKAYSEMLDLGVVLNKVNVSNFARCLCGAGK 433


>gi|357154512|ref|XP_003576808.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g79540-like [Brachypodium distachyon]
          Length = 801

 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 105/419 (25%), Positives = 166/419 (39%), Gaps = 57/419 (13%)

Query: 64  RVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVD-LLGKNCLFDAMWD 122
           R+++ TV   L  +       ++ F +SA +     SP  ++  V  LL       AM+D
Sbjct: 72  RLTRRTVSDALICADLPAASRIRLFLYSAIK-RRLRSPLLYSRAVSVLLASEPDAVAMFD 130

Query: 123 AIKSMKKENVLS-LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAIC 181
           A+   +   + +  A F ++  ++  A R ++A+  F  M  + C+   F  N++   + 
Sbjct: 131 ALADARAAGLPAPSAAFRALVLAHSSAGRHQEAVEAFSRMGDFDCRPTAFVYNAVFQVLV 190

Query: 182 RDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDN 240
             G  + A     R+V     P++ TY +L++G  K     +A K F EM +E G  PD 
Sbjct: 191 DRGVILLALALYNRMVSSGCLPNSTTYIVLMDGLCKRGMAVDALKMFDEM-LERGIVPD- 248

Query: 241 VPAYDSYLITLLKGCDGIYETVNSLK-RMMERGCNP------------------------ 275
           V  Y   L +L    +G  E    L   M E GC P                        
Sbjct: 249 VKIYTVLLSSLCN--EGRIEDAGRLLCSMKENGCPPDEVTYTVFLSGLCKAGRVDEAFHR 306

Query: 276 -------GMTFFKLAFEECLTGQNLRGAEFIWG-----AMVGRIGFRPDTHMYNMMISLY 323
                  G T   + +  CL     +   F  G      M+G+    PD  +Y ++I  +
Sbjct: 307 FELLQDGGFTLGLIGY-SCLIDGLFQAGRFDEGLSYYTEMLGK-SISPDITLYTILIRRF 364

Query: 324 CYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNH 383
             +  T  A  LLDEM   G  PD   YN L + L     +  A  L +EM++N  VL+ 
Sbjct: 365 AEAGRTKDAFLLLDEMKDKGFVPDTFCYNTLLKALFDVGNIDRAQSLMSEMLQNNVVLDS 424

Query: 384 EN-----CRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEA 437
                  C    +  +D      A++ +  M E+ C     T N L+ GL    ML EA
Sbjct: 425 TTHNIMICGLCKKGLIDK-----AMQVFDEMGEHGCHPTVMTYNALIDGLYRAGMLEEA 478



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 76/300 (25%), Positives = 127/300 (42%), Gaps = 34/300 (11%)

Query: 105 NLVVDLLGKNCLFDAMWDA----------IKSMKKENVLSLATFASVFSSYVVADRVKDA 154
              + L+G +CL D ++ A           + + K     +  +  +   +  A R KDA
Sbjct: 314 GFTLGLIGYSCLIDGLFQAGRFDEGLSYYTEMLGKSISPDITLYTILIRRFAEAGRTKDA 373

Query: 155 ITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL--RVVDGRIKPDNDTYAILLE 212
               D M+  G   D F  N+LL A+  D   ID  Q L   ++   +  D+ T+ I++ 
Sbjct: 374 FLLLDEMKDKGFVPDTFCYNTLLKALF-DVGNIDRAQSLMSEMLQNNVVLDSTTHNIMIC 432

Query: 213 GWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERG 272
           G  K+  +  A + F EM  E G  P  V  Y++ +  L +   G+ E    L   ME G
Sbjct: 433 GLCKKGLIDKAMQVFDEMG-EHGCHP-TVMTYNALIDGLYRA--GMLEEARMLFHKMEMG 488

Query: 273 CNPGM---------------TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYN 317
            NP +               +  KL    C +GQ L+  + + G +    G  PD   YN
Sbjct: 489 NNPSLFLRLTLGANQVRDTESLRKLVDGMCQSGQVLKAYKLLRGIIES--GVVPDVVTYN 546

Query: 318 MMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKN 377
            +I+  C +     A++L  E+   G  PD  TY  L + L +  +  +A+ LF  ++++
Sbjct: 547 TLINGLCKAKNLDGALRLFKELQLKGISPDEITYGTLIDGLWRAHRENDATMLFQNILRS 606



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 93/366 (25%), Positives = 139/366 (37%), Gaps = 53/366 (14%)

Query: 153 DAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILL 211
           DA+  FD M + G   DV     LLS++C +G+  DA + L  + +    PD  TY + L
Sbjct: 232 DALKMFDEMLERGIVPDVKIYTVLLSSLCNEGRIEDAGRLLCSMKENGCPPDEVTYTVFL 291

Query: 212 EGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMER 271
            G  K   V  A   F E++ + G+    +  Y S LI  L       E ++    M+ +
Sbjct: 292 SGLCKAGRVDEAFHRF-ELLQDGGFTL-GLIGY-SCLIDGLFQAGRFDEGLSYYTEMLGK 348

Query: 272 GCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYN-------------- 317
             +P +T + +           + A  +   M  + GF PDT  YN              
Sbjct: 349 SISPDITLYTILIRRFAEAGRTKDAFLLLDEMKDK-GFVPDTFCYNTLLKALFDVGNIDR 407

Query: 318 ---------------------MMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFE 356
                                +MI   C       AM++ DEM  +G  P + TYN L +
Sbjct: 408 AQSLMSEMLQNNVVLDSTTHNIMICGLCKKGLIDKAMQVFDEMGEHGCHPTVMTYNALID 467

Query: 357 FLVKGRKLWEASGLFNEMVKNEN-------------VLNHENCRAAVRVYMDSDDPYVAI 403
            L +   L EA  LF++M    N             V + E+ R  V     S     A 
Sbjct: 468 GLYRAGMLEEARMLFHKMEMGNNPSLFLRLTLGANQVRDTESLRKLVDGMCQSGQVLKAY 527

Query: 404 KFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQIL 463
           K  + +IE+       T N L+ GLC    L  A++  K +  KGI         L   L
Sbjct: 528 KLLRGIIESGVVPDVVTYNTLINGLCKAKNLDGALRLFKELQLKGISPDEITYGTLIDGL 587

Query: 464 IKARKE 469
            +A +E
Sbjct: 588 WRAHRE 593


>gi|147846788|emb|CAN80625.1| hypothetical protein VITISV_032617 [Vitis vinifera]
          Length = 733

 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 98/453 (21%), Positives = 190/453 (41%), Gaps = 20/453 (4%)

Query: 37  PTIKTLCEIIA--NTPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQ 94
           P ++ +C +I   +  +P +E  L   L  +    V  VL+   +    A++FF W+  Q
Sbjct: 69  PLVREICRLIELRSAWNPKLEGELRHLLRSLKPRQVCAVLQLQ-TDERVALRFFYWADRQ 127

Query: 95  LNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSL-ATFASVFSSYVVADRVKD 153
              +H P  +  ++++L K  L       ++ M K  +      F  V  SY  A ++++
Sbjct: 128 WRYRHDPIVYYAMLEILSKTKLCQGAKRVLRLMAKRRIERRPEAFGYVMVSYSRAGKLRN 187

Query: 154 AITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLE 212
           A+    +M++ G + D+   N+ +  +    +   A +FL R+    I P+  TY  L++
Sbjct: 188 AMRXLTMMQKAGIEPDLSICNTAIHVLVMGNRLDKAVRFLERMQIVEIXPNVITYNCLIK 247

Query: 213 GWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERG 272
           G+     + +A +   EM  + G  PD + +Y + +  L K      + +  L+ +ME+ 
Sbjct: 248 GYCDLHRLEDAXELIAEMPFK-GCSPDKI-SYYTVMGFLCK-----EKRIKELRLLMEKM 300

Query: 273 CNPG------MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYS 326
                     +T+          G      EF+  A   R  FR D   Y+ ++  +C  
Sbjct: 301 LKDSNLLPDQVTYNTFVHMLSKHGHGDEALEFLREAEERR--FRVDKVGYSAIVHSFCRE 358

Query: 327 NETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENC 386
                A ++++EM   G  PD+ TY  +   L + RK+ +A  +  +M K+    N  + 
Sbjct: 359 GRMDKAKEIVNEMFSKGCIPDVVTYTSVINGLCQERKVDQAKKMLRQMYKHGCKPNTVSY 418

Query: 387 RAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAE 446
            A +     + +   A +      E      + T ++L+ G        EA    + M +
Sbjct: 419 TALLNGLCKNGNSLEAREMMNMSEEXWWIPNAITYSVLMHGFRREGKSSEACDLVREMIK 478

Query: 447 KGIQVTPFALSKLKQILIKARKEAVYEELLKKC 479
           KG   TP  ++ L Q L +  K    +  +++C
Sbjct: 479 KGFFPTPVEINLLIQSLCQEEKVDEAKRFMEQC 511



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 67/301 (22%), Positives = 128/301 (42%), Gaps = 42/301 (13%)

Query: 78  YSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSM-KKENVLSLA 136
           + H   A++F R  A +   +     ++ +V    +    D   + +  M  K  +  + 
Sbjct: 323 HGHGDEALEFLR-EAEERRFRVDKVGYSAIVHSFCREGRMDKAKEIVNEMFSKGCIPDVV 381

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           T+ SV +      +V  A      M ++GCK +  +  +LL+ +C++G +++A + + + 
Sbjct: 382 TYTSVINGLCQERKVDQAKKMLRQMYKHGCKPNTVSYTALLNGLCKNGNSLEAREMMNMS 441

Query: 197 DGRI-KPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
           +     P+  TY++L+ G+ +E   + A     EM I+ G+ P   P   + LI  L  C
Sbjct: 442 EEXWWIPNAITYSVLMHGFRREGKSSEACDLVREM-IKKGFFP--TPVEINLLIQSL--C 496

Query: 256 DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHM 315
               E V+  KR ME+  N G     + F   + G                         
Sbjct: 497 Q--EEKVDEAKRFMEQCLNNGCAVNVVNFTTVIHG------------------------- 529

Query: 316 YNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
                  +C  ++  AA+ LLD+M  +   PD+ TY  + + L K  ++ EA+ L  +M+
Sbjct: 530 -------FCQKDDLEAALSLLDDMYLSNKHPDVVTYTTIIDALGKKGRIEEATKLAMKML 582

Query: 376 K 376
           +
Sbjct: 583 R 583


>gi|357499975|ref|XP_003620276.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495291|gb|AES76494.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 590

 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 83/359 (23%), Positives = 151/359 (42%), Gaps = 9/359 (2%)

Query: 125 KSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDG 184
           K +K   V    TF ++     +  +++ A    D +   G   D  +  +L+  +C+ G
Sbjct: 145 KILKMGYVPDTITFTTLSKGLCLKGQIQQAFLFHDKVVALGFHFDQISYGTLIHGLCKVG 204

Query: 185 KTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPA 243
           +T  A   L+ VDG  ++P+   Y  +++   K + V  A   F EMV + G  PD V  
Sbjct: 205 ETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMVSK-GISPDVVTY 263

Query: 244 YDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAM 303
             S LI+       + + ++   +M+     P +  F +          ++  + ++  M
Sbjct: 264 --SALISGFCILGKLKDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMM 321

Query: 304 VGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRK 363
           + + G +P+   YN ++  YC   E   A  + + M   G  PDIQ+Y+I+     K +K
Sbjct: 322 MKQ-GIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKK 380

Query: 364 LWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNL 423
             EA  LF EM +   + +     + +     S     A++    M +        T N 
Sbjct: 381 FDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPNICTYNS 440

Query: 424 LVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARK----EAVYEELLKK 478
           ++  LC  H + +A+       +KG Q      S L + L ++ K      V+E+LL K
Sbjct: 441 ILDALCKTHQVDKAIALLTKFKDKGFQPDISTYSILIKGLCQSGKLEDARKVFEDLLVK 499



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 68/289 (23%), Positives = 127/289 (43%), Gaps = 6/289 (2%)

Query: 96  NDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDA 154
           N K   Y +N++V+   K+            M K+ +  +  T+ S+   Y +   V  A
Sbjct: 290 NIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKA 349

Query: 155 ITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEG 213
            + F+ M Q G   D+ + + +++  C+  K  +A    + +  + I PD  TY+ L++G
Sbjct: 350 KSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDG 409

Query: 214 WEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGC 273
             K   ++ A +   +M       P N+  Y+S L  L K    + + +  L +  ++G 
Sbjct: 410 LSKSGRISYALQLVDQM--HDRGVPPNICTYNSILDALCK-THQVDKAIALLTKFKDKGF 466

Query: 274 NPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAM 333
            P ++ + +  +       L  A  ++  ++ + G+  D + Y +MI  +C       A+
Sbjct: 467 QPDISTYSILIKGLCQSGKLEDARKVFEDLLVK-GYNLDVYAYTIMIQGFCVEGLFNEAL 525

Query: 334 KLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLN 382
            LL +M  NG  PD +TY I+   L K  +   A  L  EM+     LN
Sbjct: 526 ALLSKMEDNGCIPDAKTYEIIILSLFKKDENDMAEKLLREMIARGLPLN 574


>gi|218191892|gb|EEC74319.1| hypothetical protein OsI_09597 [Oryza sativa Indica Group]
          Length = 1167

 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 90/345 (26%), Positives = 145/345 (42%), Gaps = 9/345 (2%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-V 195
           T++++  +Y        A      M + GC  +    N L++ +CR G   +A+ F + +
Sbjct: 119 TYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDM 178

Query: 196 VDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
            D  + PD  TY  L+ G  K R    AK    EM         NV  Y + +   ++  
Sbjct: 179 EDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEM--SCAELKPNVVVYANLIDGFMREG 236

Query: 256 DGIYETVNSLKRMMERGCNPG-MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTH 314
           +   E    +K M+  G  P  +T+  L    C  GQ  R A  +   MV R   RPDT 
Sbjct: 237 NA-DEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDR-ASLLLKQMV-RDSHRPDTI 293

Query: 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
            YN++I  +   +    A +LL EM   G  P++ TY+I+   L +  +  +AS L  EM
Sbjct: 294 TYNLIIEGHFRHHNKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEM 353

Query: 375 VKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIE-NHCSDLSETGNLLVAGLCDMHM 433
                  N       +  Y    +  +A + +  M + N   DL    N L+ GL  +  
Sbjct: 354 TTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLY-CYNSLIFGLSKVGR 412

Query: 434 LPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKK 478
           + E+ KY   M E+G+    F  S L    +K       E+L+++
Sbjct: 413 VEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQR 457



 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 73/299 (24%), Positives = 139/299 (46%), Gaps = 8/299 (2%)

Query: 88  FRWSAYQLNDKHSP--YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLA-TFASVFSS 144
           FR  +   N   SP  Y +++++  L ++   +   D ++ M  + +   A  +A + S 
Sbjct: 312 FRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISG 371

Query: 145 YVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPD 203
           Y     V  A   FD M +     D++  NSL+  + + G+  ++ ++   +  R + P+
Sbjct: 372 YCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPN 431

Query: 204 NDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVN 263
             TY+ L+ G+ K  D+ +A++    M ++ G  P++V  Y   L +  K  D I +  +
Sbjct: 432 EFTYSGLIHGYLKNGDLESAEQLVQRM-LDTGLKPNDV-IYIDLLESYFKS-DDIEKVSS 488

Query: 264 SLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLY 323
           + K M+++G       + +      +  N+  A F   + + + G  PD H+Y+ +IS  
Sbjct: 489 TFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAA-FRVLSEIEKNGSVPDVHVYSSLISGL 547

Query: 324 CYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLN 382
           C + +   A  +LDEM   G  P+I  YN L + L K   +  A  +FN ++    V N
Sbjct: 548 CKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPN 606



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 81/341 (23%), Positives = 132/341 (38%), Gaps = 33/341 (9%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           S A    +  +Y  + RV+DA     +M   G    +   N+LL  + R       W+  
Sbjct: 46  SPAVLDVLVDTYKKSGRVQDAAEVVLMMRDRGLAPSIRCCNALLKDLLRADAMALLWKVR 105

Query: 194 R-VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
             +V   I PD  TY+ L+E + K R+   AKK   EM  E G   + V    + LI  L
Sbjct: 106 EFMVGAGISPDVYTYSTLIEAYCKVREFDTAKKVLVEMR-ERGCGLNTVTY--NVLIAGL 162

Query: 253 KGCDGIYETVNSLKRMMERGCNP-GMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRP 311
                + E     K M + G  P G T+  L    C + ++      +       +  +P
Sbjct: 163 CRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAEL--KP 220

Query: 312 DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLF 371
           +  +Y  +I  +        A K++ EMV  G  P+  TY+ L   L K  ++  AS L 
Sbjct: 221 NVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLL 280

Query: 372 NEMVKN-------------ENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLS 418
            +MV++             E    H N + A R+  + ++  ++   + Y I  H     
Sbjct: 281 KQMVRDSHRPDTITYNLIIEGHFRHHNKKDAFRLLSEMENAGISPNVYTYSIMIH----- 335

Query: 419 ETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKL 459
                   GLC      +A    + M  KG++   F  + L
Sbjct: 336 --------GLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPL 368



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 62/283 (21%), Positives = 108/283 (38%), Gaps = 37/283 (13%)

Query: 127 MKKENVL-SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGK 185
           M K NVL  L  + S+        RV+++   F  M++ G   + F  + L+    ++G 
Sbjct: 388 MTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGD 447

Query: 186 TIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMV------------- 231
              A Q + R++D  +KP++  Y  LLE + K  D+     TF  M+             
Sbjct: 448 LESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGI 507

Query: 232 --------------------IEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMER 271
                               IE      +V  Y S +  L K  D   +    L  M ++
Sbjct: 508 LIHNLSSSGNMEAAFRVLSEIEKNGSVPDVHVYSSLISGLCKTADR-EKAFGILDEMSKK 566

Query: 272 GCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGA 331
           G +P +  +    +      ++  A  ++ +++ + G  P+   Y  +I   C   +   
Sbjct: 567 GVDPNIVCYNALIDGLCKSGDISYARNVFNSILAK-GLVPNCVTYTSLIDGSCKVGDISN 625

Query: 332 AMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
           A  L +EM+  G  PD   Y++L         L +A  L  EM
Sbjct: 626 AFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEM 668



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 62/254 (24%), Positives = 109/254 (42%), Gaps = 13/254 (5%)

Query: 138 FASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVD 197
           +  +  SY  +D ++   +TF  M   G   D      L+  +   G    A++ L  ++
Sbjct: 470 YIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSEIE 529

Query: 198 --GRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
             G + PD   Y+ L+ G  K  D   A     EM  + G DP N+  Y++ +  L K  
Sbjct: 530 KNGSV-PDVHVYSSLISGLCKTADREKAFGILDEMS-KKGVDP-NIVCYNALIDGLCKSG 586

Query: 256 DGIYETVNSLKRMMERGCNPG-MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTH 314
           D  Y   N    ++ +G  P  +T+  L    C  G ++  A +++  M+   G  PD  
Sbjct: 587 DISYAR-NVFNSILAKGLVPNCVTYTSLIDGSCKVG-DISNAFYLYNEMLA-TGITPDAF 643

Query: 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
           +Y+++ +    + +   AM L++EM   G    I ++N L +   K  K+ E   L + +
Sbjct: 644 VYSVLTTGCSSAGDLEQAMFLIEEMFLRG-HASISSFNNLVDGFCKRGKMQETLKLLHVI 702

Query: 375 VKN---ENVLNHEN 385
           +      N L  EN
Sbjct: 703 MGRGLVPNALTIEN 716


>gi|125562731|gb|EAZ08111.1| hypothetical protein OsI_30376 [Oryza sativa Indica Group]
          Length = 794

 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 114/504 (22%), Positives = 184/504 (36%), Gaps = 121/504 (24%)

Query: 85  VKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFD-AMWDAIKSMKKENV-LSLATFASVF 142
           ++ F +SA     +  P   + V  LL  +   D AM+DA+   +   +  S + FA++ 
Sbjct: 85  LRLFLFSALSPRLRSRPLHAHAVSLLLRLSSHADEAMFDALADARAAGLPASSSAFAALV 144

Query: 143 SSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIK 201
           +++  A R  DA+  F  M+++  +   F  N++L A+   G  + A     R+V     
Sbjct: 145 AAHSSAGRHADAVQAFSRMDEFQSRPTAFVYNTILKALVDSGVILLALALYNRMVAAGCA 204

Query: 202 PDNDTYAILLEGWEKERDVANAKKTFGEMV-------IEV-------------------- 234
           P+  TY +L++G  K+    +A K F EM+       +++                    
Sbjct: 205 PNRATYNVLMDGLCKQGMAGDALKMFDEMLDRGIMPNVKIYTVLLSSLCNAGKIDEAVQL 264

Query: 235 -------GWDPDNVPAYDSYLITL------------------------LKG----CDGIY 259
                  G  PD V  Y+++L  L                        LKG     DG++
Sbjct: 265 LGSMKDKGCLPDEV-TYNAFLSGLCKVGRVNEAFQRLVMLQDGGFALGLKGYSCLIDGLF 323

Query: 260 ------ETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDT 313
                 E     K M+ER  +P +  + +    C     +  A      M  + GF PDT
Sbjct: 324 QARRFDEGFGYYKTMLERNISPDVVLYTIMIRGCAEAGRIEDALSFLDVMKKK-GFVPDT 382

Query: 314 HMYN-----------------------------------MMISLYCYSNETGAAMKLLDE 338
             YN                                   +MI   C       AM++ DE
Sbjct: 383 FCYNTVLKVLCDHGDLERAHTLRSEMLQNNLVLDSTTQTIMICGLCKRGLVDEAMQIFDE 442

Query: 339 MVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNEN-------------VLNHEN 385
           M  +G  P + TYN L +   +  +L EA  LF++M    N             V + E+
Sbjct: 443 MGEHGCDPTVMTYNALIDGFYREGRLEEARMLFHKMEMGNNPSLFLRLTLGANQVRDSES 502

Query: 386 CRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMA 445
            R  V     S     A K  + +I++       T N L+ GLC    L  AV+  K + 
Sbjct: 503 LRKLVHDMCQSGQVLKAYKLLRSIIDSGVVPDVVTYNTLINGLCKARNLDGAVRLFKELQ 562

Query: 446 EKGIQVTPFALSKLKQILIKARKE 469
            KGI         L   L++A +E
Sbjct: 563 LKGISPDEITYGTLIDGLLRAHRE 586



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 85/347 (24%), Positives = 148/347 (42%), Gaps = 47/347 (13%)

Query: 108 VDLLGKNCLFDAMWDA---------IKSMKKENVL-SLATFASVFSSYVVADRVKDAITT 157
           + L G +CL D ++ A          K+M + N+   +  +  +      A R++DA++ 
Sbjct: 310 LGLKGYSCLIDGLFQARRFDEGFGYYKTMLERNISPDVVLYTIMIRGCAEAGRIEDALSF 369

Query: 158 FDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR--VVDGRIKPDNDTYAILLEGWE 215
            DVM++ G   D F  N++L  +C  G  ++    LR  ++   +  D+ T  I++ G  
Sbjct: 370 LDVMKKKGFVPDTFCYNTVLKVLCDHGD-LERAHTLRSEMLQNNLVLDSTTQTIMICGLC 428

Query: 216 KERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNP 275
           K   V  A + F EM  E G DP  V  Y++ +    +  +G  E    L   ME G NP
Sbjct: 429 KRGLVDEAMQIFDEMG-EHGCDP-TVMTYNALIDGFYR--EGRLEEARMLFHKMEMGNNP 484

Query: 276 GMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKL 335
            + F +L     L    +R                 D+     ++   C S +   A KL
Sbjct: 485 SL-FLRLT----LGANQVR-----------------DSESLRKLVHDMCQSGQVLKAYKL 522

Query: 336 LDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM----VKNENVLNHENCRAAVR 391
           L  ++ +G  PD+ TYN L   L K R L  A  LF E+    +  + +         +R
Sbjct: 523 LRSIIDSGVVPDVVTYNTLINGLCKARNLDGAVRLFKELQLKGISPDEITYGTLIDGLLR 582

Query: 392 VYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAV 438
            + ++D    A+  ++ ++++  S      N ++  LC M  L +A+
Sbjct: 583 AHREND----AMMLFQNILQSGSSPSLSIYNSMMRSLCRMKKLSQAI 625


>gi|255577256|ref|XP_002529510.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531026|gb|EEF32879.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 804

 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 110/515 (21%), Positives = 191/515 (37%), Gaps = 127/515 (24%)

Query: 86  KFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASVFSS 144
           +FF W++ +     S  + N+++D+L K+  F+  W  +K +K+    +S   F  +  +
Sbjct: 77  RFFIWAS-KFRRLRSWVSHNMIIDMLIKDNGFELYWQVLKEIKRCGFSISADAFTVLIQA 135

Query: 145 YVVADRVKDAITTFDVMEQYGCKHDVFALNS----------------------------- 175
           Y   D ++ A+ +F++M+ + CK DVF  N+                             
Sbjct: 136 YAKMDMIEKAVESFEMMKDFDCKPDVFTYNTVLHVMVRKEVVLLALGIYNRMLKLNCLPN 195

Query: 176 ------LLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFG 228
                 L+  +C+ GKT +A Q F  +   RI P+  TY I++ G  + +    A + F 
Sbjct: 196 IATFSILIDGMCKSGKTQNALQMFDEMTQRRILPNKITYTIIISGLCQAQKADVAYRLFI 255

Query: 229 EMVIEVGWDPDNVPAYDSYL------------ITLLK--------------GC--DGIYE 260
            M  + G  PD+V  Y++ L            + LLK               C  DG++ 
Sbjct: 256 AMK-DHGCIPDSV-TYNALLHGFCKLGRVDEALGLLKYFEKDRYVLDKQGYSCLIDGLFR 313

Query: 261 TVNS------LKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTH 314
                      ++M E    P +  + +  +        + A  +   M  R G  PDTH
Sbjct: 314 ARRFEDAQVWYRKMTEHNIKPDVILYTIMMKGLSKAGKFKDALRLLNEMTER-GLVPDTH 372

Query: 315 MYNMMISLY-----------------------------------CYSNETGAAMKLLDEM 339
            YN +I  Y                                   C S   G A ++ +EM
Sbjct: 373 CYNALIKGYCDLGLLDEAKSLHLEISKNDCFSSACTYTILICGMCRSGLVGDAQQIFNEM 432

Query: 340 VYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNEN-------------VLNHENC 386
             +G +P + T+N L +   K   + +A  LF +M    N             VL+  + 
Sbjct: 433 EKHGCYPSVVTFNALIDGFCKAGNIEKAQLLFYKMEIGRNPSLFLRLSQGANRVLDTASL 492

Query: 387 RAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAE 446
           +  V    DS     A      + ++  +    T N+L+ G C    +  A K  K +  
Sbjct: 493 QTMVEQLCDSGLILKAYNILMQLTDSGFAPNIITYNILIHGFCKAGNINGAFKLFKELQL 552

Query: 447 KGIQVTPFALSKLKQILIKARKE----AVYEELLK 477
           KG+         L   L+ A +E     V +++LK
Sbjct: 553 KGLSPDSVTYGTLINGLLSANREEDAFTVLDQILK 587



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 89/203 (43%), Gaps = 27/203 (13%)

Query: 176 LLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEV 234
           L+  +CR G   DA Q    ++     P   T+  L++G+ K  ++  A+  F +M  E+
Sbjct: 412 LICGMCRSGLVGDAQQIFNEMEKHGCYPSVVTFNALIDGFCKAGNIEKAQLLFYKM--EI 469

Query: 235 GWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLR 294
           G +P       S  + L +G + + +T  SL+ M+E+ C+ G+          LT     
Sbjct: 470 GRNP-------SLFLRLSQGANRVLDTA-SLQTMVEQLCDSGLILKAYNILMQLTDS--- 518

Query: 295 GAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNIL 354
                        GF P+   YN++I  +C +     A KL  E+   G  PD  TY  L
Sbjct: 519 -------------GFAPNIITYNILIHGFCKAGNINGAFKLFKELQLKGLSPDSVTYGTL 565

Query: 355 FEFLVKGRKLWEASGLFNEMVKN 377
              L+   +  +A  + ++++KN
Sbjct: 566 INGLLSANREEDAFTVLDQILKN 588


>gi|15237662|ref|NP_201237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171655|sp|Q9FMF6.1|PP444_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g64320, mitochondrial; Flags: Precursor
 gi|9759408|dbj|BAB09863.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010486|gb|AED97869.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 730

 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 81/334 (24%), Positives = 146/334 (43%), Gaps = 6/334 (1%)

Query: 135 LATFASVFSSYVVADRVKDAITTF-DVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           +  F ++   +V   R+ DA     D++  YG   DV   NSL+    ++G    A + L
Sbjct: 353 IVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVL 412

Query: 194 RVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
             +  +  KP+  +Y IL++G+ K   +  A     EM  + G  P+ V    + LI+  
Sbjct: 413 HDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSAD-GLKPNTVGF--NCLISAF 469

Query: 253 KGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD 312
                I E V   + M  +GC P +  F            ++ A ++   M+   G   +
Sbjct: 470 CKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISE-GVVAN 528

Query: 313 THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFN 372
           T  YN +I+ +    E   A KL++EMV+ G+  D  TYN L + L +  ++ +A  LF 
Sbjct: 529 TVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFE 588

Query: 373 EMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMH 432
           +M+++ +  ++ +C   +     S     A++F K M+    +    T N L+ GLC   
Sbjct: 589 KMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAG 648

Query: 433 MLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKA 466
            + + +   + +  +GI       + L   L K 
Sbjct: 649 RIEDGLTMFRKLQAEGIPPDTVTFNTLMSWLCKG 682



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 72/291 (24%), Positives = 132/291 (45%), Gaps = 10/291 (3%)

Query: 98  KHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAIT 156
           K + Y++ ++VD   K    D  ++ +  M  + +  +   F  + S++    R+ +A+ 
Sbjct: 421 KPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVE 480

Query: 157 TFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYAILLEGWE 215
            F  M + GCK DV+  NSL+S +C   +   A   LR ++   +  +  TY  L+  + 
Sbjct: 481 IFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFL 540

Query: 216 KERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSL-KRMMERGCN 274
           +  ++  A+K   EMV +    P +   Y+S +  L +   G  +   SL ++M+  G  
Sbjct: 541 RRGEIKEARKLVNEMVFQ--GSPLDEITYNSLIKGLCRA--GEVDKARSLFEKMLRDGHA 596

Query: 275 PGMTFFKLAFEE-CLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAM 333
           P      +     C +G      EF    MV R G  PD   +N +I+  C +      +
Sbjct: 597 PSNISCNILINGLCRSGMVEEAVEF-QKEMVLR-GSTPDIVTFNSLINGLCRAGRIEDGL 654

Query: 334 KLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHE 384
            +  ++   G  PD  T+N L  +L KG  +++A  L +E +++  V NH 
Sbjct: 655 TMFRKLQAEGIPPDTVTFNTLMSWLCKGGFVYDACLLLDEGIEDGFVPNHR 705



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 80/350 (22%), Positives = 152/350 (43%), Gaps = 11/350 (3%)

Query: 103 AWNLVVDLL-GKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVM 161
           ++N+V+++L   NC   A       + ++   +L TF  V  ++   + +  A++    M
Sbjct: 184 SYNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKAFCAVNEIDSALSLLRDM 243

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR--VVDGRIKPDNDTYAILLEGWEKERD 219
            ++GC  +     +L+ ++ +  +  +A Q L    + G + PD +T+  ++ G  K   
Sbjct: 244 TKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCV-PDAETFNDVILGLCKFDR 302

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTF 279
           +  A K    M+I  G+ PD++  Y   +  L K        V++ K +  R   P +  
Sbjct: 303 INEAAKMVNRMLIR-GFAPDDI-TYGYLMNGLCK-----IGRVDAAKDLFYRIPKPEIVI 355

Query: 280 FKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEM 339
           F       +T   L  A+ +   MV   G  PD   YN +I  Y      G A+++L +M
Sbjct: 356 FNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDM 415

Query: 340 VYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDP 399
              G  P++ +Y IL +   K  K+ EA  + NEM  +    N       +  +      
Sbjct: 416 RNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRI 475

Query: 400 YVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
             A++ ++ M    C     T N L++GLC++  +  A+   + M  +G+
Sbjct: 476 PEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGV 525



 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 88/348 (25%), Positives = 143/348 (41%), Gaps = 43/348 (12%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ--FLR 194
           TF  V       DR+ +A    + M   G   D      L++ +C+ G+ +DA +  F R
Sbjct: 289 TFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGR-VDAAKDLFYR 347

Query: 195 VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSY------- 247
           +     KP+   +  L+ G+     + +AK    +MV   G  PD V  Y+S        
Sbjct: 348 IP----KPEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPD-VCTYNSLIYGYWKE 402

Query: 248 -LITLL---------KGC-----------DG------IYETVNSLKRMMERGCNPGMTFF 280
            L+ L          KGC           DG      I E  N L  M   G  P    F
Sbjct: 403 GLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGF 462

Query: 281 KLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMV 340
                       +  A  I+  M  R G +PD + +N +IS  C  +E   A+ LL +M+
Sbjct: 463 NCLISAFCKEHRIPEAVEIFREM-PRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMI 521

Query: 341 YNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPY 400
             G   +  TYN L    ++  ++ EA  L NEMV   + L+     + ++    + +  
Sbjct: 522 SEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVD 581

Query: 401 VAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448
            A   ++ M+ +  +  + + N+L+ GLC   M+ EAV++ K M  +G
Sbjct: 582 KARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRG 629



 Score = 42.0 bits (97), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 48/216 (22%), Positives = 88/216 (40%), Gaps = 8/216 (3%)

Query: 163 QYGCKHDVFALNSLLSAICRDG--KTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDV 220
           Q G +H       L+  +  +G  KTID    +++ D  I      +  ++  ++K    
Sbjct: 104 QNGYRHSFDVYQVLIGKLGANGEFKTIDRL-LIQMKDEGIVFKESLFISIMRDYDKAGFP 162

Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG-CDGIYETVNSLKRMMERGCNPGMTF 279
               +   EM      +P    +Y+  L  L+ G C  +    N    M+ R   P +  
Sbjct: 163 GQTTRLMLEMRNVYSCEP-TFKSYNVVLEILVSGNCHKV--AANVFYDMLSRKIPPTLFT 219

Query: 280 FKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEM 339
           F +  +       +  A  +   M  + G  P++ +Y  +I      N    A++LL+EM
Sbjct: 220 FGVVMKAFCAVNEIDSALSLLRDMT-KHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEM 278

Query: 340 VYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
              G  PD +T+N +   L K  ++ EA+ + N M+
Sbjct: 279 FLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRML 314


>gi|125555457|gb|EAZ01063.1| hypothetical protein OsI_23091 [Oryza sativa Indica Group]
          Length = 552

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/265 (25%), Positives = 123/265 (46%), Gaps = 17/265 (6%)

Query: 119 AMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLL 177
           A    ++ M++E V+  + T+ +V    V   RVKDA    + ME+ G   + F  ++++
Sbjct: 206 AAMGVMRRMEREGVVPGVMTYGAVVDGLVRCGRVKDAWKVAEEMERNGLARNEFVYSTVI 265

Query: 178 SAICRDGK---TIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEV 234
           +  C+ G+    +  W+ +  V   ++P+   Y+ ++ G      +  A+  F EM+   
Sbjct: 266 TGFCKSGEIDCALKVWEAM--VASPVRPNVVLYSAMIGGLANFGKMTEAELLFREMI--- 320

Query: 235 GWDPDNVPAYDSYLITLLKGCDGIYETVNSL---KRMMERGCNPGMTFFKLAFEECLTGQ 291
             D    P   +Y  ++++G   I +T  +L   + M+  GC P    + +         
Sbjct: 321 --DSKCAPNIITY-GSMIQGYFKIGDTSRALSVWEEMIGAGCMPNAVSYSILINGLCNVG 377

Query: 292 NLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNG-AFPDIQT 350
            L+ A  +W  M+ R G  PDT  Y  MI   C S      ++L  +M+ +G A PD+ +
Sbjct: 378 RLKDAMMVWKHMLDR-GCAPDTIAYTSMIKGLCVSGMVDGGLRLFYDMLASGHADPDVIS 436

Query: 351 YNILFEFLVKGRKLWEASGLFNEMV 375
           YN+L + L+  + L  A  L N M+
Sbjct: 437 YNVLLDGLLLAKDLPRAMDLLNRML 461



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 68/294 (23%), Positives = 132/294 (44%), Gaps = 12/294 (4%)

Query: 159 DVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR--VVDGRIKPDNDTYAILLEGWEK 216
           +++  +    D F  ++++SA+   G+  DA   +   V DG +  +   +  +L    +
Sbjct: 108 EIIPGWDLAPDKFTYSTVVSALADAGRVDDAVALVHEMVADGVVAAE--AFNPVLRAMLR 165

Query: 217 ERDVANAKKTFGEMVIEVGWDPDNVPAYDSY--LITLLKGCDGIYETVNSLKRMMERGCN 274
             DV  A K F  M ++       VP   +Y  L+  L  C      +  ++RM   G  
Sbjct: 166 AGDVKGAAKLFEFMQLK-----GCVPTAATYNVLVHGLLVCGRAGAAMGVMRRMEREGVV 220

Query: 275 PGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMK 334
           PG+  +    +  +    ++ A  +   M  R G   +  +Y+ +I+ +C S E   A+K
Sbjct: 221 PGVMTYGAVVDGLVRCGRVKDAWKVAEEM-ERNGLARNEFVYSTVITGFCKSGEIDCALK 279

Query: 335 LLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYM 394
           + + MV +   P++  Y+ +   L    K+ EA  LF EM+ ++   N     + ++ Y 
Sbjct: 280 VWEAMVASPVRPNVVLYSAMIGGLANFGKMTEAELLFREMIDSKCAPNIITYGSMIQGYF 339

Query: 395 DSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448
              D   A+  W+ MI   C   + + ++L+ GLC++  L +A+   K M ++G
Sbjct: 340 KIGDTSRALSVWEEMIGAGCMPNAVSYSILINGLCNVGRLKDAMMVWKHMLDRG 393


>gi|302756535|ref|XP_002961691.1| hypothetical protein SELMODRAFT_403786 [Selaginella moellendorffii]
 gi|300170350|gb|EFJ36951.1| hypothetical protein SELMODRAFT_403786 [Selaginella moellendorffii]
          Length = 545

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 111/463 (23%), Positives = 188/463 (40%), Gaps = 50/463 (10%)

Query: 28  SHLDVPNLPPTIKTLCEIIAN--TPSPTVEDVLDKTLIRVSQETVEQVL-KFSYSHPGP- 83
           SH  +P  P  I+ L EII      S    + ++K+L       V  ++ K  +  P P 
Sbjct: 26  SHRPLP--PAEIERLAEIILRQVVDSKRAGEGIEKSLGLYGDILVPDLVGKVIHRIPDPN 83

Query: 84  -AVKFFRWSAYQLNDKHSPYAWNLVVDLLGK-NCLFDAMWDAIKSMKKENVLSLATFASV 141
            A + F+W+  Q    H+ +  N ++ +  K   + DA       MK        ++ ++
Sbjct: 84  TAWEVFQWAGKQSKFTHNRFTCNNLLSVYVKARRVEDAHLFFQSHMKNVFEPDEVSYNTL 143

Query: 142 FSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIK 201
            + +  A  VK A+  F  M+  G    + + N +L  +C  GK   AW+  + + G   
Sbjct: 144 MNGFFKAGDVKKALALFGEMKDSGIAV-LRSHNIVLRGLCSGGKISMAWEVFKDMSGIFS 202

Query: 202 PDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYET 261
           P+  +Y I+++G  K R V  A   F +MV +  + PD V  Y + LI  L     + E 
Sbjct: 203 PNLISYTIMIDGLCKSRKVDKAITLFKQMVDKAIY-PD-VVTYGA-LIDGLGKQRRVKEA 259

Query: 262 VNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMIS 321
            +  +    +GC+P +  +    +       +  A  ++  MV     +PD   Y+ +I+
Sbjct: 260 YDLFEEARAKGCHPTVVTYNTMIDGLCKCGRIENALTLYDDMVREPHLKPDMFTYSALIN 319

Query: 322 LYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVL 381
               SN    A +L +EM+  G  PD+ TYN L + L K       SG            
Sbjct: 320 GLNLSNRGEKAYELYEEMLDTGCSPDVVTYNTLLDGLCK-------SG------------ 360

Query: 382 NHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYA 441
                          +D  + I F K  + N C     T  +L+   C +  L +AVK A
Sbjct: 361 --------------CEDKAMEI-FRKMGVGNVCDPNVITYTVLIDRFCKVDRLGDAVKLA 405

Query: 442 KGMAEKGIQVTPFALSKLKQILIKARK----EAVYEELLKKCK 480
           K M  + +       + + Q L K  +      ++E + K CK
Sbjct: 406 KEMEGRSLLPDAVTFTTVIQKLCKESRIDEAHELFESIGKTCK 448



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 63/277 (22%), Positives = 125/277 (45%), Gaps = 7/277 (2%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVM 161
            +  ++D LGK       +D  +  + +    ++ T+ ++        R+++A+T +D M
Sbjct: 242 TYGALIDGLGKQRRVKEAYDLFEEARAKGCHPTVVTYNTMIDGLCKCGRIENALTLYDDM 301

Query: 162 -EQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERD 219
             +   K D+F  ++L++ +    +   A++ +  ++D    PD  TY  LL+G  K   
Sbjct: 302 VREPHLKPDMFTYSALINGLNLSNRGEKAYELYEEMLDTGCSPDVVTYNTLLDGLCKSGC 361

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTF 279
              A + F +M +    DP NV  Y + LI      D + + V   K M  R   P    
Sbjct: 362 EDKAMEIFRKMGVGNVCDP-NVITY-TVLIDRFCKVDRLGDAVKLAKEMEGRSLLPDAVT 419

Query: 280 FKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEM 339
           F    ++      +  A  ++ + +G+   +PD+ ++N M++ YC       A KL D M
Sbjct: 420 FTTVIQKLCKESRIDEAHELFES-IGKT-CKPDSVLFNTMLAGYCKITRIDDAKKLHDRM 477

Query: 340 VYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK 376
           + +G  P + TY  L     +  +  +A  +++EM++
Sbjct: 478 LDSGCAPTLATYTALVTGFCRTGRYSDALIMYHEMIE 514


>gi|302760727|ref|XP_002963786.1| hypothetical protein SELMODRAFT_79843 [Selaginella moellendorffii]
 gi|300169054|gb|EFJ35657.1| hypothetical protein SELMODRAFT_79843 [Selaginella moellendorffii]
          Length = 432

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 76/318 (23%), Positives = 141/318 (44%), Gaps = 9/318 (2%)

Query: 84  AVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVF 142
           A   FR        + + + +N +VD L K    DA    I   +K +    + T+ ++ 
Sbjct: 115 AFDLFRKMVAAGGCRPNAFTYNALVDGLCKQDRLDAARAVITEARKRDFAPDVVTYNTLM 174

Query: 143 SSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIK 201
           ++     RV +A+ TF  M + G    + + N++++ +CR  +  DA + F  ++D    
Sbjct: 175 AALFQLGRVDEALATFTQMTEEGYVPTLVSFNAIITGLCRARRLADALEVFNEMIDRDFH 234

Query: 202 PDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYET 261
           P+  TY+++++G  K   +  A++    MV E G  PD V AY + L+        +   
Sbjct: 235 PNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSE-GCRPDLV-AY-TPLVLGFSAAGRLDSA 291

Query: 262 VNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMIS 321
           +  L+RM+ +GC P +  + +  ++      +  A  I+  +V      P+   Y+ +I 
Sbjct: 292 LGLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVDDAHEIFRELVAN-KCSPNVVTYSALIG 350

Query: 322 LYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVL 381
            YC ++      K++ EM      P++ TYN +   L    +  EA G+F EM +   V 
Sbjct: 351 GYCRASRVDEGGKVMREMACR---PNVVTYNTMIWGLSMVDRNEEAYGMFREMSECGFVP 407

Query: 382 NHENCRAAVRVYMDSDDP 399
           +    R   R     D P
Sbjct: 408 DARTYRGLKRALRMIDQP 425



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 97/414 (23%), Positives = 168/414 (40%), Gaps = 68/414 (16%)

Query: 84  AVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASVF 142
           A++ FR +  QL    S   +N+++         DA +  ++ M  E +  +  T + + 
Sbjct: 10  ALQLFRENPCQL--PASSVTYNVLIRGFCNASDLDAAFSLLREMDVEGMQCNDRTTSIIL 67

Query: 143 SSYVVADRVKDAITTFDV-MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR--VVDGR 199
                  RV  A+  FD  +E    + DV +  +L++ +C+ G+   A+   R  V  G 
Sbjct: 68  QGLCRCGRVAQALEHFDASLELAHAQPDVVSYTTLINGLCKLGRVDAAFDLFRKMVAAGG 127

Query: 200 IKPDNDTYAILLEGWEKE---------------RDVA--------------------NAK 224
            +P+  TY  L++G  K+               RD A                     A 
Sbjct: 128 CRPNAFTYNALVDGLCKQDRLDAARAVITEARKRDFAPDVVTYNTLMAALFQLGRVDEAL 187

Query: 225 KTFGEMVIEVGWDPDNVPAYDSY--LITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKL 282
            TF +M  E G+    VP   S+  +IT L     + + +     M++R  +P +  + +
Sbjct: 188 ATFTQMT-EEGY----VPTLVSFNAIITGLCRARRLADALEVFNEMIDRDFHPNLVTYSV 242

Query: 283 AFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYN 342
             +       L  A+ +   MV   G RPD   Y  ++  +  +    +A+ LL  MV  
Sbjct: 243 VIDGLCKSDQLDEAQQLLDRMVSE-GCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQ 301

Query: 343 GAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNE---NVLNHEN-----CRAAVRVYM 394
           G  PD+ TY ++ + L K  ++ +A  +F E+V N+   NV+ +       CRA+ RV  
Sbjct: 302 GCIPDVVTYTVVIDKLCKVGRVDDAHEIFRELVANKCSPNVVTYSALIGGYCRAS-RVD- 359

Query: 395 DSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448
                    +  K M E  C     T N ++ GL  +    EA    + M+E G
Sbjct: 360 ---------EGGKVMREMACRPNVVTYNTMIWGLSMVDRNEEAYGMFREMSECG 404



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 60/282 (21%), Positives = 105/282 (37%), Gaps = 9/282 (3%)

Query: 182 RDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNV 241
           R G    A Q  R    ++   + TY +L+ G+    D+  A     EM +E     D  
Sbjct: 3   RAGSHNQALQLFRENPCQLPASSVTYNVLIRGFCNASDLDAAFSLLREMDVEGMQCNDRT 62

Query: 242 PAYDSYLITLLKGCDGIYETVNSLKRMMERG-CNPGMTFFKLAFEECLTGQNLRGAEFIW 300
               S ++  L  C  + + +      +E     P +  +            +  A  ++
Sbjct: 63  T---SIILQGLCRCGRVAQALEHFDASLELAHAQPDVVSYTTLINGLCKLGRVDAAFDLF 119

Query: 301 GAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVK 360
             MV   G RP+   YN ++   C  +   AA  ++ E       PD+ TYN L   L +
Sbjct: 120 RKMVAAGGCRPNAFTYNALVDGLCKQDRLDAARAVITEARKRDFAPDVVTYNTLMAALFQ 179

Query: 361 GRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSET 420
             ++ EA   F +M +   V    +  A +     +     A++ +  MI+        T
Sbjct: 180 LGRVDEALATFTQMTEEGYVPTLVSFNAIITGLCRARRLADALEVFNEMIDRDFHPNLVT 239

Query: 421 GNLLVAGLCDMHMLPEAVKYAKGMAEKG-----IQVTPFALS 457
            ++++ GLC    L EA +    M  +G     +  TP  L 
Sbjct: 240 YSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLG 281


>gi|449487696|ref|XP_004157755.1| PREDICTED: uncharacterized protein LOC101223774 [Cucumis sativus]
          Length = 1315

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 90/353 (25%), Positives = 157/353 (44%), Gaps = 20/353 (5%)

Query: 106  LVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYG 165
            ++     K+ +  A+W   K  K     +L  ++S+ S       VK A    + M + G
Sbjct: 872  IITAFCEKSLVNRAVWFFHKVTKMGLSPNLINYSSMISGLCKRGSVKQAFELLEEMVKNG 931

Query: 166  CKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDG-RIKPDNDTYAILLEGWEKERDVANA 223
             K +V+   SL+  +C+ G T  A++ FL+++     KP+  TY  ++ G+ KE  ++ A
Sbjct: 932  WKPNVYTHTSLIHGLCKKGWTERAFRLFLKLIRSDNYKPNVHTYTAMISGYCKEEKLSRA 991

Query: 224  KKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLK--RMMERGCNPGMTFFK 281
                 EM+ E   +   VP  ++Y  TL+   DG  +  N  K   +ME   N G     
Sbjct: 992  -----EMLFERMKEQGLVPNTNTY-TTLI---DGHCKAGNFSKAYELMELMSNEGFFPNT 1042

Query: 282  LAFEECLTGQNLRG-AEFIWGAMVGRIGFR----PDTHMYNMMISLYCYSNETGAAMKLL 336
              +   + G   RG AE  +  +    GF+     D   Y ++IS  C   +   A+  L
Sbjct: 1043 CTYNSIVDGLCKRGRAEEAFKLL--NTGFQNQIEADGVTYTILISEQCKRADMNQALVFL 1100

Query: 337  DEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDS 396
            ++M   G  PDI  Y  L     +   + ++  LF+E++K       E   + +  Y   
Sbjct: 1101 NKMFKVGFQPDIHLYTTLIAAFCRQNMMKDSEKLFDEVIKLGLAPTKETYTSMICGYCRE 1160

Query: 397  DDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
                +A+KF++ M ++ C+  S +   L++GLC    L EA +    M +KG+
Sbjct: 1161 KKVSLAVKFFQKMSDHGCAPDSISYGALISGLCKESRLDEARQLYDTMIDKGL 1213



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 75/335 (22%), Positives = 136/335 (40%), Gaps = 14/335 (4%)

Query: 151  VKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAI 209
            V+ A   FD M   G   D      ++   CR+G  ++A +++  +++     DN T  +
Sbjct: 812  VEYAGNVFDEMSARGVYPDSCTYKYIIVGYCRNGNVLEADRWICEMMERGFVVDNATLTL 871

Query: 210  LLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMM 269
            ++  +  E+ + N    F   V ++G  P N+  Y S +  L K    + +    L+ M+
Sbjct: 872  IITAF-CEKSLVNRAVWFFHKVTKMGLSP-NLINYSSMISGLCKR-GSVKQAFELLEEMV 928

Query: 270  ERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNE 328
            + G  P + T   L    C  G   R A  ++  ++    ++P+ H Y  MIS YC   +
Sbjct: 929  KNGWKPNVYTHTSLIHGLCKKGWTER-AFRLFLKLIRSDNYKPNVHTYTAMISGYCKEEK 987

Query: 329  TGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVL-NHENCR 387
               A  L + M   G  P+  TY  L +   K     +A  L  E++ NE    N     
Sbjct: 988  LSRAEMLFERMKEQGLVPNTNTYTTLIDGHCKAGNFSKAYELM-ELMSNEGFFPNTCTYN 1046

Query: 388  AAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEK 447
            + V           A K      +N       T  +L++  C    + +A+ +   M + 
Sbjct: 1047 SIVDGLCKRGRAEEAFKLLNTGFQNQIEADGVTYTILISEQCKRADMNQALVFLNKMFKV 1106

Query: 448  GIQ-----VTPFALSKLKQILIKARKEAVYEELLK 477
            G Q      T    +  +Q ++K   E +++E++K
Sbjct: 1107 GFQPDIHLYTTLIAAFCRQNMMK-DSEKLFDEVIK 1140


>gi|357449185|ref|XP_003594869.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355483917|gb|AES65120.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 545

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 86/348 (24%), Positives = 151/348 (43%), Gaps = 9/348 (2%)

Query: 136 ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRV 195
            TF  +     +   V  A+   D +   G + D  +  +L++ +CR G+T  A Q LR 
Sbjct: 129 VTFTILIKGLCLKGEVHKALYFHDKVVAQGFQLDQVSYGTLINGLCRVGETKAAVQLLRR 188

Query: 196 VDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG 254
           VDG+ ++P+   Y+ +++   K++ V +A   + EMV +    PD V  Y S LI+    
Sbjct: 189 VDGKLVRPNVVMYSTIIDSMCKDKLVNDAFDLYCEMVSK-RISPD-VVTYSS-LISGFCV 245

Query: 255 CDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTH 314
              +   V+   RM+    NP +  F +  +       +R A+ +   M+ +   + D  
Sbjct: 246 VGKLKYAVDLFNRMISDNINPNVYTFSILIDGFCKEGKVREAKNVLAVMMKK-NVKLDVV 304

Query: 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
            YN ++  YC   +   A  L + M   G  PD+ +Y+I+     K + + EA  LF EM
Sbjct: 305 TYNSLMDGYCLVKQVNKAKSLFNVMAQRGVTPDVWSYSIMINGFCKIKMVDEAMKLFEEM 364

Query: 375 VKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHML 434
              +   N     + V     S     A++    M +        T N ++  +C  + +
Sbjct: 365 HCKQIFPNVVTYNSLVDGLCKSGRTSCALELVDEMHDRGQPSNIITYNSILDAICKNNHV 424

Query: 435 PEAVKYAKGMAEKGIQVTPFALSKLKQILIKARK----EAVYEELLKK 478
            +A+     + EKGIQ   F  + L   L K  +    + V+E+LL K
Sbjct: 425 DKAIVLLTKIKEKGIQPDIFTYTVLINGLCKVGRLDDAQKVFEDLLVK 472



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 84/338 (24%), Positives = 156/338 (46%), Gaps = 24/338 (7%)

Query: 43  CEIIANTPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSP- 101
           CE+++   SP V  V   +LI  S   V   LK+       AV  F      ++D  +P 
Sbjct: 222 CEMVSKRISPDV--VTYSSLI--SGFCVVGKLKY-------AVDLFNR---MISDNINPN 267

Query: 102 -YAWNLVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASVFSSYVVADRVKDAITTFD 159
            Y +++++D   K        + +  M K+NV L + T+ S+   Y +  +V  A + F+
Sbjct: 268 VYTFSILIDGFCKEGKVREAKNVLAVMMKKNVKLDVVTYNSLMDGYCLVKQVNKAKSLFN 327

Query: 160 VMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKER 218
           VM Q G   DV++ + +++  C+     +A +    +  + I P+  TY  L++G  K  
Sbjct: 328 VMAQRGVTPDVWSYSIMINGFCKIKMVDEAMKLFEEMHCKQIFPNVVTYNSLVDGLCKSG 387

Query: 219 DVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGM- 277
             + A +   EM       P N+  Y+S L  + K  + + + +  L ++ E+G  P + 
Sbjct: 388 RTSCALELVDEM--HDRGQPSNIITYNSILDAICKN-NHVDKAIVLLTKIKEKGIQPDIF 444

Query: 278 TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLD 337
           T+  L    C  G+ L  A+ ++  ++ + G+ P+ + Y  +I+ +C        + +L 
Sbjct: 445 TYTVLINGLCKVGR-LDDAQKVFEDLLVK-GYSPNIYTYTSLINGFCNKGFFDEGLAMLS 502

Query: 338 EMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
           +M  NG  P+  TY IL   L +  +  +A  L  EM+
Sbjct: 503 KMKDNGCIPNAITYEILIHSLFEKDENDKAEKLLREMI 540



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 69/342 (20%), Positives = 135/342 (39%), Gaps = 37/342 (10%)

Query: 104 WNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVME 162
           ++ ++D + K+ L +  +D    M  + +   + T++S+ S + V  ++K A+  F+ M 
Sbjct: 201 YSTIIDSMCKDKLVNDAFDLYCEMVSKRISPDVVTYSSLISGFCVVGKLKYAVDLFNRMI 260

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVA 221
                 +V+  + L+   C++GK  +A   L V+  + +K D  TY  L++G+   + V 
Sbjct: 261 SDNINPNVYTFSILIDGFCKEGKVREAKNVLAVMMKKNVKLDVVTYNSLMDGYCLVKQVN 320

Query: 222 NAKKTFGEMVIEVGWDPDNVPAYDSYLITLLK--------------GCDGIYETVNSLKR 267
            AK  F  M  + G  PD V +Y   +    K               C  I+  V +   
Sbjct: 321 KAKSLFNVMA-QRGVTPD-VWSYSIMINGFCKIKMVDEAMKLFEEMHCKQIFPNVVTYNS 378

Query: 268 MMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRI-------------------G 308
           +++  C  G T   L   + +  +        + +++  I                   G
Sbjct: 379 LVDGLCKSGRTSCALELVDEMHDRGQPSNIITYNSILDAICKNNHVDKAIVLLTKIKEKG 438

Query: 309 FRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEAS 368
            +PD   Y ++I+  C       A K+ ++++  G  P+I TY  L           E  
Sbjct: 439 IQPDIFTYTVLINGLCKVGRLDDAQKVFEDLLVKGYSPNIYTYTSLINGFCNKGFFDEGL 498

Query: 369 GLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMI 410
            + ++M  N  + N       +    + D+   A K  + MI
Sbjct: 499 AMLSKMKDNGCIPNAITYEILIHSLFEKDENDKAEKLLREMI 540



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 75/317 (23%), Positives = 122/317 (38%), Gaps = 42/317 (13%)

Query: 138 FASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVV 196
           F  +  S + A + + A++    ME  G K D    N L++   + G    ++  F +++
Sbjct: 61  FGKILGSLLKAKQYQTALSLSQQMEFNGIKPDFITCNLLMNCFSQLGHIKFSFSVFAKIL 120

Query: 197 DGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD 256
                PD  T+ IL++G   + +V  A   F + V+  G+  D V +Y     TL+ G  
Sbjct: 121 KKGYHPDAVTFTILIKGLCLKGEVHKAL-YFHDKVVAQGFQLDQV-SYG----TLINGLC 174

Query: 257 GIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMY 316
            + ET  ++                         Q LR  +   G +V     RP+  MY
Sbjct: 175 RVGETKAAV-------------------------QLLRRVD---GKLV-----RPNVVMY 201

Query: 317 NMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK 376
           + +I   C       A  L  EMV     PD+ TY+ L        KL  A  LFN M+ 
Sbjct: 202 STIIDSMCKDKLVNDAFDLYCEMVSKRISPDVVTYSSLISGFCVVGKLKYAVDLFNRMIS 261

Query: 377 NENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPE 436
           +    N       +  +        A      M++ +      T N L+ G C +  + +
Sbjct: 262 DNINPNVYTFSILIDGFCKEGKVREAKNVLAVMMKKNVKLDVVTYNSLMDGYCLVKQVNK 321

Query: 437 AVKYAKGMAEKGIQVTP 453
           A      MA++G  VTP
Sbjct: 322 AKSLFNVMAQRG--VTP 336


>gi|302770561|ref|XP_002968699.1| hypothetical protein SELMODRAFT_61973 [Selaginella moellendorffii]
 gi|300163204|gb|EFJ29815.1| hypothetical protein SELMODRAFT_61973 [Selaginella moellendorffii]
          Length = 544

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 76/283 (26%), Positives = 129/283 (45%), Gaps = 10/283 (3%)

Query: 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLA-TFASVFSSYVVADRVKDAITTFDV 160
           + ++++++   K    +  W+    M + N +  A TF ++ + +  A  ++DAI  F  
Sbjct: 244 FTYSIIINCYCKLDKVEEAWEVFMKMIESNCVPNAVTFNTLIAGFCKAGMLEDAIKLFAE 303

Query: 161 MEQYGCKHDVFALNSLLSAICRD-GKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKER 218
           ME+ GCK  +   N+L+ ++C+  G    A      ++G  + P   TY  L++G+   R
Sbjct: 304 MEKIGCKATIVTYNTLIDSLCKKRGGVYTAVDLFNKLEGAGLTPTIVTYNSLIQGFCDAR 363

Query: 219 DVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGM- 277
            ++ A + F EM    G    NV  Y S LI  L     + E   +L+ M   G  P + 
Sbjct: 364 RLSEAMQYFDEME---GKCAPNVITY-SILIDGLCKVRRMKEAAKTLEDMKAHGYTPTVV 419

Query: 278 TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLD 337
           T+  L    C  G+ L+ A   +  M    G  P+T ++N +I   C +      ++LL 
Sbjct: 420 TYGGLINGFCKCGE-LKSALLFFEKM-KLAGCAPNTVIFNTLIDGLCKAERANDGLRLLC 477

Query: 338 EMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENV 380
            M   G  PD+ TYN L   L    ++ +A  LF+ M    NV
Sbjct: 478 HMHAEGCKPDVITYNCLISGLCSANRVEDAQRLFDGMACAPNV 520



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 71/345 (20%), Positives = 144/345 (41%), Gaps = 12/345 (3%)

Query: 109 DLLGKNCLFDAMWDAIKSMKKENVLS-------LATFASVFSSYVVADRVKDAITTFDVM 161
           DL   + L  A+ D+ +  +   + S       + T+  +   Y    +  +A +    +
Sbjct: 175 DLESYHILLSALSDSGRMAEAHALFSAMTCSPDIMTYNVLMDGYCKIGQTYEAQSLMKEI 234

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDV 220
            + G + +VF  + +++  C+  K  +AW+ F+++++    P+  T+  L+ G+ K   +
Sbjct: 235 LKAGYEPNVFTYSIIINCYCKLDKVEEAWEVFMKMIESNCVPNAVTFNTLIAGFCKAGML 294

Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFF 280
            +A K F EM  ++G     +  Y++ + +L K   G+Y  V+   ++   G  P +  +
Sbjct: 295 EDAIKLFAEME-KIGCKA-TIVTYNTLIDSLCKKRGGVYTAVDLFNKLEGAGLTPTIVTY 352

Query: 281 KLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMV 340
               +     + L  A   +  M G+    P+   Y+++I   C       A K L++M 
Sbjct: 353 NSLIQGFCDARRLSEAMQYFDEMEGKCA--PNVITYSILIDGLCKVRRMKEAAKTLEDMK 410

Query: 341 YNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPY 400
            +G  P + TY  L     K  +L  A   F +M       N       +     ++   
Sbjct: 411 AHGYTPTVVTYGGLINGFCKCGELKSALLFFEKMKLAGCAPNTVIFNTLIDGLCKAERAN 470

Query: 401 VAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMA 445
             ++   +M    C     T N L++GLC  + + +A +   GMA
Sbjct: 471 DGLRLLCHMHAEGCKPDVITYNCLISGLCSANRVEDAQRLFDGMA 515



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 73/338 (21%), Positives = 130/338 (38%), Gaps = 51/338 (15%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           T+  +   +    ++  A++ F  M+  G   +   +N+LL  +C  G+   A +  R +
Sbjct: 34  TYNVLIRGFCKGGQMHQAVSVFSDMKSSGLLPNASTMNTLLLGLCEIGQMSSALKLFREM 93

Query: 197 D-GRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
             G   P + ++ ILL G+     V +A     +M         +  A  +Y + L   C
Sbjct: 94  QAGPFLPTSASHNILLRGFFMAGRVRDALAHLQDM-----RKSSSSVATGTYNLVLKGLC 148

Query: 256 ------DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGF 309
                 + + + +   K M   G  P +  + +          +  A  ++ AM      
Sbjct: 149 WENKSANRLEQAMEFFKEMKASGVEPDLESYHILLSALSDSGRMAEAHALFSAMT----C 204

Query: 310 RPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASG 369
            PD   YN+++  YC   +T  A  L+ E++  G  P++ TY+I+     K  K+ EA  
Sbjct: 205 SPDIMTYNVLMDGYCKIGQTYEAQSLMKEILKAGYEPNVFTYSIIINCYCKLDKVEEAWE 264

Query: 370 LFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLC 429
           +F +                                   MIE++C   + T N L+AG C
Sbjct: 265 VFMK-----------------------------------MIESNCVPNAVTFNTLIAGFC 289

Query: 430 DMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKAR 467
              ML +A+K    M + G + T    + L   L K R
Sbjct: 290 KAGMLEDAIKLFAEMEKIGCKATIVTYNTLIDSLCKKR 327



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/146 (23%), Positives = 67/146 (45%), Gaps = 4/146 (2%)

Query: 309 FRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEAS 368
           F P+ H YN++I  +C   +   A+ +  +M  +G  P+  T N L   L +  ++  A 
Sbjct: 28  FAPNAHTYNVLIRGFCKGGQMHQAVSVFSDMKSSGLLPNASTMNTLLLGLCEIGQMSSAL 87

Query: 369 GLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGL 428
            LF EM     +    +    +R +  +     A+   + M ++  S  + T NL++ GL
Sbjct: 88  KLFREMQAGPFLPTSASHNILLRGFFMAGRVRDALAHLQDMRKSSSSVATGTYNLVLKGL 147

Query: 429 C----DMHMLPEAVKYAKGMAEKGIQ 450
           C      + L +A+++ K M   G++
Sbjct: 148 CWENKSANRLEQAMEFFKEMKASGVE 173


>gi|358346502|ref|XP_003637306.1| Pentatricopeptide repeat-containing protein, partial [Medicago
           truncatula]
 gi|355503241|gb|AES84444.1| Pentatricopeptide repeat-containing protein, partial [Medicago
           truncatula]
          Length = 603

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 81/333 (24%), Positives = 149/333 (44%), Gaps = 17/333 (5%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-F 192
           +L  F  +         +K A    + M   G K +V+   SL+  +C+ G T  A++ F
Sbjct: 274 NLINFTCMIEGLCKRGSIKQAFEMLEEMVGKGWKPNVYTHTSLIDGLCKKGWTEKAFRLF 333

Query: 193 LRVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITL 251
           L++V     KP+  TY  ++ G+ +E  +  A     EM++    +   VP  ++Y  TL
Sbjct: 334 LKLVRSENHKPNVLTYTAMISGYCREDKLNRA-----EMLLSRMKEQGLVPNTNTY-TTL 387

Query: 252 LKG-CD-GIYETVNSLKRMME-RGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRI 307
           + G C  G +E    L  +M   G +P + T+  +    C  G+     + +        
Sbjct: 388 IDGHCKAGNFERAYDLMNLMSSEGFSPNLCTYNAIVNGLCKRGRVQEAYKMLEDGFQN-- 445

Query: 308 GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEA 367
           G +PD   YN+++S +C       A+ L ++M+  G  PDI +Y  L     +  ++ E+
Sbjct: 446 GLKPDKFTYNILMSEHCKQENIRQALALFNKMLKIGIQPDIHSYTTLIAVFCRENRMKES 505

Query: 368 SGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAG 427
              F E V+   +  ++   + +  Y    +  +A+KF+  + ++ C+  S T   +++G
Sbjct: 506 EMFFEEAVRIGIIPTNKTYTSMICGYCREGNLTLAMKFFHRLSDHGCAPDSITYGAIISG 565

Query: 428 LCDMHMLPEAVKYAKGMAEKGI---QVTPFALS 457
           LC      EA      M EKG+   +VT   L+
Sbjct: 566 LCKQSKRDEARSLYDSMIEKGLVPCEVTRITLA 598



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 52/240 (21%), Positives = 109/240 (45%), Gaps = 13/240 (5%)

Query: 124 IKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICR 182
           +  MK++ ++ +  T+ ++   +  A   + A    ++M   G   ++   N++++ +C+
Sbjct: 369 LSRMKEQGLVPNTNTYTTLIDGHCKAGNFERAYDLMNLMSSEGFSPNLCTYNAIVNGLCK 428

Query: 183 DGKTIDAWQFLRVVDG---RIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPD 239
            G+  +A++ L   DG    +KPD  TY IL+    K+ ++  A   F +M +++G  PD
Sbjct: 429 RGRVQEAYKMLE--DGFQNGLKPDKFTYNILMSEHCKQENIRQALALFNKM-LKIGIQPD 485

Query: 240 NVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNP-GMTFFKLAFEECLTGQNLRGAEF 298
            + +Y + LI +    + + E+    +  +  G  P   T+  +    C  G      +F
Sbjct: 486 -IHSYTT-LIAVFCRENRMKESEMFFEEAVRIGIIPTNKTYTSMICGYCREGNLTLAMKF 543

Query: 299 IWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFP-DIQTYNILFEF 357
                +   G  PD+  Y  +IS  C  ++   A  L D M+  G  P ++    + +E+
Sbjct: 544 F--HRLSDHGCAPDSITYGAIISGLCKQSKRDEARSLYDSMIEKGLVPCEVTRITLAYEY 601


>gi|255557743|ref|XP_002519901.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540947|gb|EEF42505.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 777

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 84/341 (24%), Positives = 141/341 (41%), Gaps = 43/341 (12%)

Query: 138 FASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVD 197
           F+++ +++    RV DAI  F  ME+ G   +V   N+++  +C++G+  +A+QF   ++
Sbjct: 200 FSTMVNAFCTGGRVDDAIELFRKMEKVGVAPNVVTYNNIIHGLCKNGRLDEAFQFKEKME 259

Query: 198 G-RIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD 256
             R+KP   TY +L+ G  K      A     EM  + G+ P+NV               
Sbjct: 260 KERVKPSLVTYGVLINGLVKLERFDEANCILKEMS-DRGYAPNNV--------------- 303

Query: 257 GIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMY 316
            +Y T      +++  C  G               N+  A  I   M+   G  P++   
Sbjct: 304 -VYNT------LIDGYCRIG---------------NISTALQIRDDMISN-GISPNSVTC 340

Query: 317 NMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK 376
           N +I  YC SN+   A  LL+EM+  G   +  T+  +   L    +   A     EM+ 
Sbjct: 341 NSLIQGYCKSNQMEHAEHLLEEMLTGGGVINQGTFTSVIHRLCLKCRFDSALLFIMEMLL 400

Query: 377 NENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPE 436
                N       V     +     AI+ W  ++E   +  + T N L+ GLC+     E
Sbjct: 401 RNFKPNDGLLTLLVSGLCQNGKQSEAIELWYRLLEKGFAANTVTSNALIHGLCEAGSKEE 460

Query: 437 AVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLK 477
           A K  K M E+G+ +   + + L   ++   KE   EE  K
Sbjct: 461 AAKLLKEMLERGLVLDSISYNTL---ILACCKEGKVEEGFK 498



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 73/316 (23%), Positives = 132/316 (41%), Gaps = 7/316 (2%)

Query: 136 ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRV 195
            T  S+   Y  +++++ A    + M   G   +     S++  +C   +   A  F+  
Sbjct: 338 VTCNSLIQGYCKSNQMEHAEHLLEEMLTGGGVINQGTFTSVIHRLCLKCRFDSALLFIME 397

Query: 196 VDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG 254
           +  R  KP++    +L+ G  +    + A + +  + +E G+  + V +  + LI  L  
Sbjct: 398 MLLRNFKPNDGLLTLLVSGLCQNGKQSEAIELWYRL-LEKGFAANTVTS--NALIHGLCE 454

Query: 255 CDGIYETVNSLKRMMERGCN-PGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDT 313
                E    LK M+ERG     +++  L    C  G+   G  F     + R G +PD 
Sbjct: 455 AGSKEEAAKLLKEMLERGLVLDSISYNTLILACCKEGKVEEG--FKLKEEMVRRGIQPDM 512

Query: 314 HMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNE 373
           + YNM++   C   +   A  L  E   NG FPD  TY I+ +   K  ++ E   LF E
Sbjct: 513 YTYNMLLHGLCNMGKIEEAGGLWHECKKNGNFPDAYTYGIMIDGYCKANRVEEGEKLFQE 572

Query: 374 MVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHM 433
           MV  +   N       +R Y ++ +   A +    M        S T + L+ GL ++ +
Sbjct: 573 MVTMKIEQNAVVYGTLIRAYCENGNMREAFRLRDDMRSRGIPQTSATYSSLIHGLSNIGL 632

Query: 434 LPEAVKYAKGMAEKGI 449
           +  A +    M ++G+
Sbjct: 633 VDSANQLLDEMRKEGL 648



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 66/272 (24%), Positives = 110/272 (40%), Gaps = 40/272 (14%)

Query: 132 VLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDA-- 189
           VL   ++ ++  +     +V++     + M + G + D++  N LL  +C  GK  +A  
Sbjct: 474 VLDSISYNTLILACCKEGKVEEGFKLKEEMVRRGIQPDMYTYNMLLHGLCNMGKIEEAGG 533

Query: 190 -WQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMV--------------IEV 234
            W   +  +G   PD  TY I+++G+ K   V   +K F EMV              I  
Sbjct: 534 LWHECKK-NGNF-PDAYTYGIMIDGYCKANRVEEGEKLFQEMVTMKIEQNAVVYGTLIRA 591

Query: 235 GWDPDN---------------VPAYDSYLITLLKGCD--GIYETVNSL-KRMMERGCNPG 276
             +  N               +P   +   +L+ G    G+ ++ N L   M + G +P 
Sbjct: 592 YCENGNMREAFRLRDDMRSRGIPQTSATYSSLIHGLSNIGLVDSANQLLDEMRKEGLSPN 651

Query: 277 MTFFK-LAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKL 335
           +  +  L    C  GQ  +    +    +  +   P+   Y +MI+ +C      AA KL
Sbjct: 652 VVCYTALIGGYCKLGQMHKVDSILQEMSINNV--HPNKITYTIMINGHCKLGNMKAAAKL 709

Query: 336 LDEMVYNGAFPDIQTYNILFEFLVKGRKLWEA 367
           L+EM   G  PD  TYN L     K  K+ EA
Sbjct: 710 LNEMAQKGIVPDAVTYNALTNGFCKEGKMEEA 741



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 65/261 (24%), Positives = 107/261 (40%), Gaps = 14/261 (5%)

Query: 102 YAWNLVVDLL---GKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTF 158
           Y +N+++  L   GK      +W   K  K  N     T+  +   Y  A+RV++    F
Sbjct: 513 YTYNMLLHGLCNMGKIEEAGGLWHECK--KNGNFPDAYTYGIMIDGYCKANRVEEGEKLF 570

Query: 159 DVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDND-TYAILLEGWEKE 217
             M     + +     +L+ A C +G   +A++    +  R  P    TY+ L+ G    
Sbjct: 571 QEMVTMKIEQNAVVYGTLIRAYCENGNMREAFRLRDDMRSRGIPQTSATYSSLIHGLSNI 630

Query: 218 RDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNS-LKRMMERGCNPG 276
             V +A +   EM  E G  P NV  Y + +    K   G    V+S L+ M     +P 
Sbjct: 631 GLVDSANQLLDEMRKE-GLSP-NVVCYTALIGGYCK--LGQMHKVDSILQEMSINNVHPN 686

Query: 277 -MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKL 335
            +T+  +    C  G N++ A  +   M  + G  PD   YN + + +C   +   A+K+
Sbjct: 687 KITYTIMINGHCKLG-NMKAAAKLLNEMAQK-GIVPDAVTYNALTNGFCKEGKMEEALKV 744

Query: 336 LDEMVYNGAFPDIQTYNILFE 356
            D M   G   D  TY  L +
Sbjct: 745 CDLMSTGGISLDDITYTTLID 765



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 89/385 (23%), Positives = 139/385 (36%), Gaps = 45/385 (11%)

Query: 132 VLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ 191
           V++  TF SV     +  R   A+     M     K +   L  L+S +C++GK  +A +
Sbjct: 369 VINQGTFTSVIHRLCLKCRFDSALLFIMEMLLRNFKPNDGLLTLLVSGLCQNGKQSEAIE 428

Query: 192 F-LRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLIT 250
              R+++     +  T   L+ G  +      A K   EM +E G   D++ +Y++ ++ 
Sbjct: 429 LWYRLLEKGFAANTVTSNALIHGLCEAGSKEEAAKLLKEM-LERGLVLDSI-SYNTLILA 486

Query: 251 LLKGCDGIYETVNSLKR-MMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGF 309
             K  +G  E    LK  M+ RG  P M  + +          +  A  +W     + G 
Sbjct: 487 CCK--EGKVEEGFKLKEEMVRRGIQPDMYTYNMLLHGLCNMGKIEEAGGLWHE-CKKNGN 543

Query: 310 RPDTHMYNMMISLYCYSNETGAAMKLLDEMVY-------------------NG------- 343
            PD + Y +MI  YC +N      KL  EMV                    NG       
Sbjct: 544 FPDAYTYGIMIDGYCKANRVEEGEKLFQEMVTMKIEQNAVVYGTLIRAYCENGNMREAFR 603

Query: 344 --------AFPDIQ-TYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYM 394
                     P    TY+ L   L     +  A+ L +EM K     N     A +  Y 
Sbjct: 604 LRDDMRSRGIPQTSATYSSLIHGLSNIGLVDSANQLLDEMRKEGLSPNVVCYTALIGGYC 663

Query: 395 DSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPF 454
                +      + M  N+      T  +++ G C +  +  A K    MA+KGI     
Sbjct: 664 KLGQMHKVDSILQEMSINNVHPNKITYTIMINGHCKLGNMKAAAKLLNEMAQKGIVPDAV 723

Query: 455 ALSKLKQILIKARKEAVYEELLKKC 479
             + L        KE   EE LK C
Sbjct: 724 TYNALTNGFC---KEGKMEEALKVC 745



 Score = 41.2 bits (95), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 1/87 (1%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           T+  + + +     +K A    + M Q G   D    N+L +  C++GK  +A +   ++
Sbjct: 689 TYTIMINGHCKLGNMKAAAKLLNEMAQKGIVPDAVTYNALTNGFCKEGKMEEALKVCDLM 748

Query: 197 D-GRIKPDNDTYAILLEGWEKERDVAN 222
             G I  D+ TY  L++GW K   V++
Sbjct: 749 STGGISLDDITYTTLIDGWHKPLTVSS 775


>gi|224053663|ref|XP_002297917.1| predicted protein [Populus trichocarpa]
 gi|222845175|gb|EEE82722.1| predicted protein [Populus trichocarpa]
          Length = 670

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 99/420 (23%), Positives = 188/420 (44%), Gaps = 20/420 (4%)

Query: 53  TVEDVLD--KTLIRVSQETVEQVLKFSYSH---PGPAVKFFRWSAYQLNDKHSPYAWNLV 107
           ++E VLD  K   RV  E    V+  +Y     P  AV  F   A +   K +  ++N V
Sbjct: 108 SLEKVLDRMKCEKRVIFEKCFIVIFKAYGKAHLPEKAVDLFDRMACEFECKRTGKSFNSV 167

Query: 108 VDLLGKNCLFDAMWDAIKSMKKENVLSLA----TFASVFSSYVVADRVKDAITTFDVMEQ 163
           ++++ +  LF    +    +     +S++    TF  V  +      V DAI  F  M  
Sbjct: 168 LNVIIQEGLFHRALEFYNHVIGAKGVSISPNVLTFNLVIKAMCKVGLVDDAIQVFRDMTI 227

Query: 164 YGCKHDVFALNSLLSAICRDGKTIDAWQFL--RVVDGRIKPDNDTYAILLEGWEKERDVA 221
             C+ DV+   +L+  +C+  +  +A   L    +DG   P   T+ +L+ G  K+ D++
Sbjct: 228 RKCEPDVYTYCTLMDGLCKADRIDEAVSLLDEMQIDGCF-PSPVTFNVLINGLCKKGDLS 286

Query: 222 NAKKTFGEMVIEVGWDPDNVPAYDSYLITL-LKGCDGIYETVNSLKRMMERGCNPGMTFF 280
            A K    M ++ G  P+ V  Y++ +  L LKG   + + ++ L RM+   C P +  +
Sbjct: 287 RAAKLVDNMFLK-GCIPNEV-TYNTLIHGLCLKG--KLEKAISLLDRMVSSKCVPNVVTY 342

Query: 281 KLAFEECL-TGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEM 339
                  +  G+ L GA  +  A++   G+  + ++Y+ +IS      ++  AM L  EM
Sbjct: 343 GTIINGLVKQGRALDGACVL--ALMEERGYCVNEYVYSTLISGLFKEGKSQEAMHLFKEM 400

Query: 340 VYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDP 399
              G   +   Y+ + + L +  K  +A  + +EM       N   C + ++ + ++ + 
Sbjct: 401 TVKGYELNTIVYSAVIDGLCRDGKPDDAVEVLSEMTNKGCTPNAYTCSSLMKGFFEAGNS 460

Query: 400 YVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKL 459
           + A++ WK M +++ +      ++L+ GLC    + EA+     M  KG +    A S +
Sbjct: 461 HRAVEVWKDMAKHNFTQNEVCYSVLIHGLCKDGKVKEAMMVWTQMLGKGCKPDVVAYSSM 520



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 77/341 (22%), Positives = 142/341 (41%), Gaps = 47/341 (13%)

Query: 100 SPYAWNLVVDLLGKNCLFDAMWDAIKSM-KKENVLSLATFASVFSSYVVADRVKDAITTF 158
           SP  +N++++ L K          + +M  K  + +  T+ ++     +  +++ AI+  
Sbjct: 268 SPVTFNVLINGLCKKGDLSRAAKLVDNMFLKGCIPNEVTYNTLIHGLCLKGKLEKAISLL 327

Query: 159 DVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDND-TYAILLEGWEKE 217
           D M    C  +V    ++++ + + G+ +D    L +++ R    N+  Y+ L+ G  KE
Sbjct: 328 DRMVSSKCVPNVVTYGTIINGLVKQGRALDGACVLALMEERGYCVNEYVYSTLISGLFKE 387

Query: 218 RDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYE-TVNSLKRMMERGCNPG 276
                A   F EM ++ G++ + +  Y + +  L +  DG  +  V  L  M  +GC P 
Sbjct: 388 GKSQEAMHLFKEMTVK-GYELNTI-VYSAVIDGLCR--DGKPDDAVEVLSEMTNKGCTPN 443

Query: 277 M----TFFKLAFEE--------------------------------CLTGQNLRGAEFIW 300
                +  K  FE                                 C  G+ ++ A  +W
Sbjct: 444 AYTCSSLMKGFFEAGNSHRAVEVWKDMAKHNFTQNEVCYSVLIHGLCKDGK-VKEAMMVW 502

Query: 301 GAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNG--AFPDIQTYNILFEFL 358
             M+G+ G +PD   Y+ MI+    +     AM+L +EM+  G  + PD+ TYNIL   L
Sbjct: 503 TQMLGK-GCKPDVVAYSSMINGLSIAGLVEDAMQLYNEMLCQGPDSQPDVVTYNILLNTL 561

Query: 359 VKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDP 399
            K   +  A  L N M+      +   C   +R+  +  DP
Sbjct: 562 CKQSSISRAIDLLNSMLDRGCDPDLVTCTIFLRMLREKLDP 602


>gi|168007580|ref|XP_001756486.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162692525|gb|EDQ78882.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 528

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 87/366 (23%), Positives = 145/366 (39%), Gaps = 45/366 (12%)

Query: 119 AMWDAIKSMKKENV-----LSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFAL 173
            + D ++++ KE V     L   T   + ++Y   ++  DA   F+  E + C   V A 
Sbjct: 9   GILDPLETLLKEMVAEGRPLRPNTLVKLITAYGRGNKSGDAFDLFNQAESFACSPTVHAF 68

Query: 174 NSLLSAICRDGKTIDA-WQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVI 232
             L+  +   G+   A   + ++V    + D   Y +L+  + +   + +A + F EM I
Sbjct: 69  TKLIDILVNSGEFERAELVYKKLVQKGCQLDRFAYNVLIRYFGRSGQLDSAMEMFREMKI 128

Query: 233 EVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQN 292
           + G +PD       +L+  L     + E  +    M+ERG  P +  + L  +       
Sbjct: 129 K-GSEPDEYTY--GFLVNALGKAGRVQEARSFFDAMLERGLTPNIPTYNLLMDAFRKVGQ 185

Query: 293 LRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYN 352
           L  A  ++  M  R GF+P    YN+++   C +   GAA KL  +M  +G  PD  TY+
Sbjct: 186 LDMALGLFAEM-KRRGFQPSVVTYNILLDALCSAGRVGAARKLFHKMTGDGCSPDSYTYS 244

Query: 353 ILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIEN 412
            L   L K  ++ EA  +F EMV                      D  VA+    Y    
Sbjct: 245 TLVNGLGKSGRVEEAHKVFREMV----------------------DRGVAVDLVNY---- 278

Query: 413 HCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVY 472
                    N L+A L     +    K  K M+ KG     F+ + +   L KA K    
Sbjct: 279 ---------NSLLATLAKAGNMDRVWKLMKEMSRKGFHPDAFSFNTIMDALGKANKPDAA 329

Query: 473 EELLKK 478
            E+  +
Sbjct: 330 REVFAR 335



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 103/396 (26%), Positives = 166/396 (41%), Gaps = 40/396 (10%)

Query: 102 YAWNLVVDLLGK-------NCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDA 154
           Y +  +V+ LGK          FDAM      +++    ++ T+  +  ++    ++  A
Sbjct: 136 YTYGFLVNALGKAGRVQEARSFFDAM------LERGLTPNIPTYNLLMDAFRKVGQLDMA 189

Query: 155 ITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDG-RIKPDNDTYAILLEG 213
           +  F  M++ G +  V   N LL A+C  G+   A +    + G    PD+ TY+ L+ G
Sbjct: 190 LGLFAEMKRRGFQPSVVTYNILLDALCSAGRVGAARKLFHKMTGDGCSPDSYTYSTLVNG 249

Query: 214 WEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG--CDGIYETVNSLKRMMER 271
             K   V  A K F EMV + G   D V  Y+S L TL K    D +++    +K M  +
Sbjct: 250 LGKSGRVEEAHKVFREMV-DRGVAVDLVN-YNSLLATLAKAGNMDRVWKL---MKEMSRK 304

Query: 272 GCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGA 331
           G +P    F    +          A  ++  MV   G +PD   YN++I  Y    +   
Sbjct: 305 GFHPDAFSFNTIMDALGKANKPDAAREVFARMV-ESGCKPDLISYNILIDSYARFGDAAQ 363

Query: 332 AMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVR 391
           A ++L+EMV  G  P+ +TYN L  +L    ++ EA  +  EM           CR  V 
Sbjct: 364 ARQMLEEMVEAGFIPETKTYNSLIHWLATDGQVDEAFAVLEEM-------ETAGCRPDVV 416

Query: 392 VY---MD----SDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGM 444
            Y   MD      +   A + ++ M +      + +  + + GL     L EA+   K M
Sbjct: 417 TYNRLMDMLGKRGENQRAARLFQQMKDKGVEPDTLSYAVRIDGLAFDDRLDEALVLFKDM 476

Query: 445 AEKGIQVTPFALSKLKQILIKARKEAVYEELLKKCK 480
              G  V       + +ILI+A   A   EL  + K
Sbjct: 477 KAVGCPVD----KAMYRILIRAAHRAGDTELEAQLK 508



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 68/279 (24%), Positives = 125/279 (44%), Gaps = 10/279 (3%)

Query: 102 YAWNLVVDLLGKNCLFDAMWDAIKSMK-KENVLSLATFASVFSSYVVADRVKDAITTFDV 160
           +A+N+++   G++   D+  +  + MK K +     T+  + ++   A RV++A + FD 
Sbjct: 101 FAYNVLIRYFGRSGQLDSAMEMFREMKIKGSEPDEYTYGFLVNALGKAGRVQEARSFFDA 160

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERD 219
           M + G   ++   N L+ A  + G+   A      +  R  +P   TY ILL+       
Sbjct: 161 MLERGLTPNIPTYNLLMDAFRKVGQLDMALGLFAEMKRRGFQPSVVTYNILLDALCSAGR 220

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTF 279
           V  A+K F +M  + G  PD+     S L+  L     + E     + M++RG    +  
Sbjct: 221 VGAARKLFHKMTGD-GCSPDSYTY--STLVNGLGKSGRVEEAHKVFREMVDRGVAVDLVN 277

Query: 280 FKLAFEECLTGQNLRGAEFIWGAM--VGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLD 337
           +           N+   + +W  M  + R GF PD   +N ++     +N+  AA ++  
Sbjct: 278 YNSLLATLAKAGNM---DRVWKLMKEMSRKGFHPDAFSFNTIMDALGKANKPDAAREVFA 334

Query: 338 EMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK 376
            MV +G  PD+ +YNIL +   +     +A  +  EMV+
Sbjct: 335 RMVESGCKPDLISYNILIDSYARFGDAAQARQMLEEMVE 373



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 82/385 (21%), Positives = 144/385 (37%), Gaps = 44/385 (11%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           ++  F  +    V +   + A   +  + Q GC+ D FA N L+    R G+   A +  
Sbjct: 64  TVHAFTKLIDILVNSGEFERAELVYKKLVQKGCQLDRFAYNVLIRYFGRSGQLDSAMEMF 123

Query: 194 RVVDGRIK---PDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLIT 250
           R +  +IK   PD  TY  L+    K   V  A+  F  M +E G  P N+P Y+  L+ 
Sbjct: 124 REM--KIKGSEPDEYTYGFLVNALGKAGRVQEARSFFDAM-LERGLTP-NIPTYN-LLMD 178

Query: 251 LLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFR 310
             +    +   +     M  RG  P +  + +  +   +   +  A  ++  M G  G  
Sbjct: 179 AFRKVGQLDMALGLFAEMKRRGFQPSVVTYNILLDALCSAGRVGAARKLFHKMTGD-GCS 237

Query: 311 PDTHMYNMMISLYCYSNETGAAMKLLDEMV----------YN------------------ 342
           PD++ Y+ +++    S     A K+  EMV          YN                  
Sbjct: 238 PDSYTYSTLVNGLGKSGRVEEAHKVFREMVDRGVAVDLVNYNSLLATLAKAGNMDRVWKL 297

Query: 343 -------GAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMD 395
                  G  PD  ++N + + L K  K   A  +F  MV++    +  +    +  Y  
Sbjct: 298 MKEMSRKGFHPDAFSFNTIMDALGKANKPDAAREVFARMVESGCKPDLISYNILIDSYAR 357

Query: 396 SDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFA 455
             D   A +  + M+E      ++T N L+  L     + EA    + M   G +     
Sbjct: 358 FGDAAQARQMLEEMVEAGFIPETKTYNSLIHWLATDGQVDEAFAVLEEMETAGCRPDVVT 417

Query: 456 LSKLKQILIKARKEAVYEELLKKCK 480
            ++L  +L K  +      L ++ K
Sbjct: 418 YNRLMDMLGKRGENQRAARLFQQMK 442


>gi|449444202|ref|XP_004139864.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15200-like [Cucumis sativus]
 gi|449502917|ref|XP_004161779.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15200-like [Cucumis sativus]
          Length = 532

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 102/489 (20%), Positives = 190/489 (38%), Gaps = 88/489 (17%)

Query: 14  SPDPHNKRKRSTFASHLDVPNLPPTI----------KTLCEIIANTPSPTVEDVLDKTLI 63
           +P P N   R+  +  + V + P T+          + +     + P   +E  L    +
Sbjct: 60  TPSPRNCHDRTLVSDSIAVSDEPITVHPDDPSAVYVQNVLYFRRHKPVEDIERALSLCDL 119

Query: 64  RVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLN--DKHSPYA--WNLVVDLLGKNCLFDA 119
            ++ + V +VL+   S   PA  FF W   +    +K +P +  +N ++ +LGK   F+ 
Sbjct: 120 VLTDDFVLKVLRRHRSDWNPAFIFFNWVLKRGTNEEKFTPGSVIYNEILVILGKFRRFEE 179

Query: 120 MWDAIKSM-KKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLS 178
           +   +  M K++ +++  T++ + + Y  A +V++AI+ F   +++G + ++ A  SLL 
Sbjct: 180 VDKVLVEMSKRKELVNEETYSVLLNRYAAAHKVEEAISIFYRRQEFGLEMNLIAFQSLLM 239

Query: 179 AICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDP 238
            +CR      A             D  T  I+L GW    +V  AK+ + E +IE   +P
Sbjct: 240 WLCRYKHVEAAETLFHSKKHEFVTDIKTSNIILNGWCVLGNVHEAKRFWRE-IIESKCEP 298

Query: 239 DNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEF 298
           D +  Y +               +NSL +  + G    +  F+  +E  LT         
Sbjct: 299 D-IYTYGTL--------------INSLTKKGKLGT--ALKLFRAMWERGLTT-------- 333

Query: 299 IWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFL 358
                        D  + N +I   C+      A+++  EM   G   ++ TYN L + L
Sbjct: 334 -------------DVVICNCIIDALCFKKRIPEALEIFKEMNERGCAANVATYNTLIKHL 380

Query: 359 VKGRKLWEASGLFNEMVKNENV---------------------------LNHENCRAA-- 389
            K R++ + + L NEM + +                             +    C+    
Sbjct: 381 CKIRRMEKVNELLNEMEERKGSCWPNSVTFIYLLGSVRGPEEVPVLFQRMERSGCKMTSD 440

Query: 390 -----VRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGM 444
                +R+YMD D        W  M E        +  +++ GL +     + ++Y   M
Sbjct: 441 IYNLILRLYMDWDIQERVKSTWNEMKEMGLGPDRRSYTIMIHGLYEKGRTKDGLRYFNEM 500

Query: 445 AEKGIQVTP 453
             KGI   P
Sbjct: 501 TLKGIMPEP 509



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 49/223 (21%), Positives = 86/223 (38%), Gaps = 10/223 (4%)

Query: 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR 194
           + T+ ++ +S     ++  A+  F  M + G   DV   N ++ A+C   +  +A +  +
Sbjct: 300 IYTYGTLINSLTKKGKLGTALKLFRAMWERGLTTDVVICNCIIDALCFKKRIPEALEIFK 359

Query: 195 VVDGRIKPDN-DTYAILLEGWEKERDVANAKKTFGEMVIEVG--WDPDNVPAYDSYLITL 251
            ++ R    N  TY  L++   K R +    +   EM    G  W P++V       I L
Sbjct: 360 EMNERGCAANVATYNTLIKHLCKIRRMEKVNELLNEMEERKGSCW-PNSVT-----FIYL 413

Query: 252 LKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRP 311
           L    G  E     +RM   GC      + L     +        +  W  M   +G  P
Sbjct: 414 LGSVRGPEEVPVLFQRMERSGCKMTSDIYNLILRLYMDWDIQERVKSTWNEM-KEMGLGP 472

Query: 312 DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNIL 354
           D   Y +MI        T   ++  +EM   G  P+ +T  ++
Sbjct: 473 DRRSYTIMIHGLYEKGRTKDGLRYFNEMTLKGIMPEPKTEKLV 515


>gi|414864980|tpg|DAA43537.1| TPA: hypothetical protein ZEAMMB73_764503 [Zea mays]
          Length = 649

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 93/367 (25%), Positives = 161/367 (43%), Gaps = 27/367 (7%)

Query: 104 WNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVME 162
           +N V+  L K+  FD   +  ++M + +V   + +F  +   +     VK+A+  +  M+
Sbjct: 230 YNSVLKGLCKHRRFDKAKEVFRTMDQCSVAPDVRSFNILIGGFCRVGEVKEAVKFYKEMQ 289

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDG-RIKPDNDTYAILLEGWEKERDVA 221
                 DV + + L+    R G+   A  +LR + G  + PD   Y +++ G+ +   ++
Sbjct: 290 HRYVTPDVVSFSCLIGLFSRRGEMDHAGAYLREMKGLGLVPDGVIYTMVIGGFCRAGSMS 349

Query: 222 NAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGM-TFF 280
            A +   EMV   G  PD V  Y++ L  L K    + +    L  M ERG  P + TF 
Sbjct: 350 EALRVRDEMV-GFGCLPD-VVTYNTLLNGLCKQ-HRLLDAEKLLNEMEERGVTPDLCTFT 406

Query: 281 KLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMV 340
            L    C  G N   A  ++  ++ R   RPD   YN +I   C   +   A +L D+M 
Sbjct: 407 TLIHGYCRQG-NFENALQLFDTLL-RQRLRPDVVTYNSLIDGMCRKGDLAKANELWDDMH 464

Query: 341 YNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPY 400
                P+  TY+IL +   +  ++ +A G  +EMVK  N+ N     + ++ Y  S +  
Sbjct: 465 AREILPNHITYSILIDSHCEKGQVEDAFGFLDEMVKKGNLPNIRTYNSIIKGYCRSGNVK 524

Query: 401 VAIKFWKYMIENHCSDLSETGNLLVAGLC---DMH-------------MLPEAVKY---A 441
              +F + M +++      T N L+ G     +MH             + P+AV Y    
Sbjct: 525 KGQQFLQKMRQDNVFPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVRPDAVTYNMII 584

Query: 442 KGMAEKG 448
            G +E+G
Sbjct: 585 NGFSEQG 591



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 107/483 (22%), Positives = 178/483 (36%), Gaps = 78/483 (16%)

Query: 49  TPSPTVEDVLDKTLI--RVSQETVEQV-LKFSYSHPGPAVK--------------FFRWS 91
           TP P V D+L +T    R  +E  E   L   +  P PA                     
Sbjct: 84  TPQPQVFDLLIRTYTQSRKPREAFEAFRLLLDHRVPVPASASNALLAVLSRAGWPHLAQE 143

Query: 92  AYQL----NDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYV 146
           AY+L    + + + Y  N++V    K   FD     I  M+K  V   + T   +  +  
Sbjct: 144 AYRLVLSSDSEVNAYTLNIMVHSYCKTLEFDGADTVISEMEKRCVFPDVVTHNVLIDARF 203

Query: 147 VADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDG-RIKPDND 205
            A  V  AI   D M   G K  +   NS+L  +C+  +   A +  R +D   + PD  
Sbjct: 204 RAGDVDAAIALVDSMANRGLKPGIVTYNSVLKGLCKHRRFDKAKEVFRTMDQCSVAPDVR 263

Query: 206 TYAILLEGWEKERDVANAKKTFGEM-----------------VIEVGWDPDNVPAY---- 244
           ++ IL+ G+ +  +V  A K + EM                 +     + D+  AY    
Sbjct: 264 SFNILIGGFCRVGEVKEAVKFYKEMQHRYVTPDVVSFSCLIGLFSRRGEMDHAGAYLREM 323

Query: 245 -------DSYLITLLKG----CDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNL 293
                  D  + T++ G       + E +     M+  GC P +  +            L
Sbjct: 324 KGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGFGCLPDVVTYNTLLNGLCKQHRL 383

Query: 294 RGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNI 353
             AE +   M  R G  PD   +  +I  YC       A++L D ++     PD+ TYN 
Sbjct: 384 LDAEKLLNEMEER-GVTPDLCTFTTLIHGYCRQGNFENALQLFDTLLRQRLRPDVVTYNS 442

Query: 354 LFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENH 413
           L + + +   L +A+ L+++M   E + NH      +  + +      A  F   M++  
Sbjct: 443 LIDGMCRKGDLAKANELWDDMHAREILPNHITYSILIDSHCEKGQVEDAFGFLDEMVKKG 502

Query: 414 CSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYE 473
                 T N ++ G C             G  +KG           +Q L K R++ V+ 
Sbjct: 503 NLPNIRTYNSIIKGYC-----------RSGNVKKG-----------QQFLQKMRQDNVFP 540

Query: 474 ELL 476
           +L+
Sbjct: 541 DLI 543



 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 66/284 (23%), Positives = 123/284 (43%), Gaps = 15/284 (5%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVLS----------LATFASVFSSYVVADRVK 152
            +  + D++  N L + +    + +  E +L+          L TF ++   Y      +
Sbjct: 360 GFGCLPDVVTYNTLLNGLCKQHRLLDAEKLLNEMEERGVTPDLCTFTTLIHGYCRQGNFE 419

Query: 153 DAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILL 211
           +A+  FD + +   + DV   NSL+  +CR G    A +    +  R I P++ TY+IL+
Sbjct: 420 NALQLFDTLLRQRLRPDVVTYNSLIDGMCRKGDLAKANELWDDMHAREILPNHITYSILI 479

Query: 212 EGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMER 271
           +   ++  V +A     EMV + G  P N+  Y+S +    +  + + +    L++M + 
Sbjct: 480 DSHCEKGQVEDAFGFLDEMV-KKGNLP-NIRTYNSIIKGYCRSGN-VKKGQQFLQKMRQD 536

Query: 272 GCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGA 331
              P +  F       +  +N+ GA  ++  M   +  RPD   YNM+I+ +        
Sbjct: 537 NVFPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEM-VRPDAVTYNMIINGFSEQGNMQD 595

Query: 332 AMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
           A ++   M  +G  PD  TY  L    V      +A  L +EM+
Sbjct: 596 AGRVFKGMGDSGIEPDRYTYMSLINGHVTAGNSKQAFQLHDEMI 639


>gi|414887392|tpg|DAA63406.1| TPA: hypothetical protein ZEAMMB73_124662 [Zea mays]
          Length = 795

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 72/243 (29%), Positives = 114/243 (46%), Gaps = 11/243 (4%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           TF S+   Y  A + ++AI     ME  GC   V   NSL+SA  +DG   +A +  + +
Sbjct: 292 TFNSLLDVYGKARKHEEAIGVLKRMENAGCTPSVVTYNSLISAYVKDGLLEEALELKQEM 351

Query: 197 DGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
           + R +KPD  TY  L+ G ++   +  A  T+ EMV   G  P N+  Y++  +  L G 
Sbjct: 352 EFRGMKPDVVTYTTLISGLDRVGKIDAALATYSEMV-RNGCSP-NLCTYNA--LIKLHGV 407

Query: 256 DGIY-ETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAM--VGRIGFRPD 312
            G + E +     +   G  P +  +       + GQN   +E + G    + + G+ P+
Sbjct: 408 RGKFTEMMAVFDDLRSAGYVPDVVTWNTLLS--VFGQNGLDSE-VSGVFKEMKKAGYIPE 464

Query: 313 THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFN 372
              Y  +IS Y        AM++   M+  G +PDI TYN +   L +G +  +A  LF 
Sbjct: 465 RDTYVSLISSYSRCGLFDQAMEIYKRMIEAGIYPDISTYNAVLSALARGGRWEQAEKLFA 524

Query: 373 EMV 375
           EMV
Sbjct: 525 EMV 527



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 83/372 (22%), Positives = 157/372 (42%), Gaps = 22/372 (5%)

Query: 104 WNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVME 162
           WN ++ + G+N L   +    K MKK   +    T+ S+ SSY        A+  +  M 
Sbjct: 433 WNTLLSVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDQAMEIYKRMI 492

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDVA 221
           + G   D+   N++LSA+ R G+   A + F  +VD   KPD  +Y+ LL  +      A
Sbjct: 493 EAGIYPDISTYNAVLSALARGGRWEQAEKLFAEMVDRDCKPDELSYSSLLHAY------A 546

Query: 222 NAKKTFGEMVIEVGWDPDNVPAYDSYLITLL---KGCDGIYETVNSLKRMMERGCNPGMT 278
           NAKK      +      + +  ++  + TL+      + + ET  + + +  R C+  + 
Sbjct: 547 NAKKLDKMKTLSEDIYAERIERHNWLVKTLVLVNNKVNNLPETEKAFQELRRRRCSLDIN 606

Query: 279 FFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDE 338
                       + ++  E +   M+           YN ++ +Y    +      +L E
Sbjct: 607 VLNAMVSIYGKNKMVKKVEEVLSLMMEN-SINHSAATYNSLMHMYSRLGDCEKCESILTE 665

Query: 339 MVYNGAFPDIQTYN-ILFEFLVKGRKLWEASGLFNEM----VKNENVLNHENCRAAVRVY 393
           +  +G  PD  +YN +++ +  KG ++ EAS LF+EM    VK + V  +   ++ V   
Sbjct: 666 IKSSGMRPDRYSYNTVIYAYGRKG-QMKEASRLFSEMKCSGVKPDIVTYNIFIKSYVANI 724

Query: 394 MDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTP 453
           M  +    AI   +Y++   C     T N ++ G      + EA  +   + +    ++ 
Sbjct: 725 MFEE----AIDLVRYLVTQGCRPNERTFNSILQGYSRHGRMVEAKSFLSNLPKIYPGISK 780

Query: 454 FALSKLKQILIK 465
               +L ++L K
Sbjct: 781 QEKQRLSELLAK 792



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 97/244 (39%), Gaps = 48/244 (19%)

Query: 169 DVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILL---------------- 211
           D  A  +L+SA  R G+  DA   F R+VDG ++P   TY ++                 
Sbjct: 183 DASAYTALVSAFSRAGRFRDAVAVFQRMVDGGVQPALVTYNVVFHAYSKMSVPWKEVVAL 242

Query: 212 ------EGWEKERDVAN--------------AKKTFGEMVIEVGWDPDNVPAYDSYLITL 251
                 +G E++R   N              A + F EM    G++PD V  ++S L+ +
Sbjct: 243 VDSMKEDGIERDRYTYNTLISCCRRRGLHREAAQVFDEMK-AAGFEPDKV-TFNS-LLDV 299

Query: 252 LKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRP 311
                   E +  LKRM   GC P +  +       +    L  A  +   M  R G +P
Sbjct: 300 YGKARKHEEAIGVLKRMENAGCTPSVVTYNSLISAYVKDGLLEEALELKQEMEFR-GMKP 358

Query: 312 DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLF 371
           D   Y  +IS      +  AA+    EMV NG  P++ TYN L        KL    G F
Sbjct: 359 DVVTYTTLISGLDRVGKIDAALATYSEMVRNGCSPNLCTYNALI-------KLHGVRGKF 411

Query: 372 NEMV 375
            EM+
Sbjct: 412 TEMM 415



 Score = 51.6 bits (122), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 71/306 (23%), Positives = 122/306 (39%), Gaps = 23/306 (7%)

Query: 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FL 193
           + T+ ++ S      ++  A+ T+  M + GC  ++   N+L+      GK  +    F 
Sbjct: 360 VVTYTTLISGLDRVGKIDAALATYSEMVRNGCSPNLCTYNALIKLHGVRGKFTEMMAVFD 419

Query: 194 RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSY--LITL 251
            +      PD  T+  LL  + +    +     F EM  + G+    +P  D+Y  LI+ 
Sbjct: 420 DLRSAGYVPDVVTWNTLLSVFGQNGLDSEVSGVFKEMK-KAGY----IPERDTYVSLISS 474

Query: 252 LKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRP 311
              C    + +   KRM+E G  P ++ +         G     AE ++  MV R   +P
Sbjct: 475 YSRCGLFDQAMEIYKRMIEAGIYPDISTYNAVLSALARGGRWEQAEKLFAEMVDR-DCKP 533

Query: 312 DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLV----KGRKLWEA 367
           D   Y+ ++  Y  + +    MK L E +Y      I+ +N L + LV    K   L E 
Sbjct: 534 DELSYSSLLHAYANAKKLD-KMKTLSEDIYA---ERIERHNWLVKTLVLVNNKVNNLPET 589

Query: 368 SGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAG 427
              F E+ +    L+     A V +Y  +       +    M+EN  +  + T N L   
Sbjct: 590 EKAFQELRRRRCSLDINVLNAMVSIYGKNKMVKKVEEVLSLMMENSINHSAATYNSL--- 646

Query: 428 LCDMHM 433
              MHM
Sbjct: 647 ---MHM 649



 Score = 42.7 bits (99), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 65/144 (45%), Gaps = 6/144 (4%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTID-AWQF 192
           +L T+ ++   + V  +  + +  FD +   G   DV   N+LLS   ++G   + +  F
Sbjct: 394 NLCTYNALIKLHGVRGKFTEMMAVFDDLRSAGYVPDVVTWNTLLSVFGQNGLDSEVSGVF 453

Query: 193 LRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
             +      P+ DTY  L+  + +      A + +  M IE G  PD +  Y++ L  L 
Sbjct: 454 KEMKKAGYIPERDTYVSLISSYSRCGLFDQAMEIYKRM-IEAGIYPD-ISTYNAVLSALA 511

Query: 253 KGCDGIYETVNSL-KRMMERGCNP 275
           +G  G +E    L   M++R C P
Sbjct: 512 RG--GRWEQAEKLFAEMVDRDCKP 533


>gi|356529495|ref|XP_003533326.1| PREDICTED: uncharacterized protein LOC100779660 [Glycine max]
          Length = 1205

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 109/495 (22%), Positives = 198/495 (40%), Gaps = 66/495 (13%)

Query: 23  RSTFASHLDVPNLPPTIKTLCEIIANTPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPG 82
           R  F+  L +PN    ++       ++  P++++V D     VSQ      ++    H  
Sbjct: 6   RLRFSVSLSIPNFSSFLQNSSHSHFHSQPPSIQNVDDA----VSQFNRMLCMR----HTP 57

Query: 83  PAVKFFRWSAYQLNDKHSPYAWNLV---------VDLLGKNCLFDAMWDA---------- 123
           P ++F +        KH   A +L           DL+  N L +               
Sbjct: 58  PIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNILINCFCHMGQITFGFSVL 117

Query: 124 IKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRD 183
            K +K+       T  ++     +  +VK A+   D +   G + +  +  +L++ +C+ 
Sbjct: 118 AKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYGTLINGVCKI 177

Query: 184 GKTIDAWQFLRVVDGRI-KPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVP 242
           G T  A + L+ +DGR+ KP+   Y+ +++   K + V+ A   F EM ++ G   D V 
Sbjct: 178 GDTRAAIKLLQKIDGRLTKPNVVMYSTIIDALCKYQLVSEAYGLFSEMTVK-GISADVV- 235

Query: 243 AYDSYLITLLKGC--DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIW 300
              +Y   +   C    + E +  L  M+ +  NP +  + +  +       ++ A+ + 
Sbjct: 236 ---TYSTLIYGFCIEGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVL 292

Query: 301 GAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVK 360
             M+ +   +PD   Y+ ++  Y    E   A  + + M   G  PD+ TY IL     K
Sbjct: 293 AVML-KACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCK 351

Query: 361 GRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDD--------PYVAIKFWKYMIEN 412
            + + EA  LF EM       + +N    +  Y    D        PYV    W  + E 
Sbjct: 352 NKMVDEALNLFKEM-------HQKNMVPGIVTYSSLIDGLCKSGRIPYV----WDLIDEM 400

Query: 413 HCSDLSETGNL-----LVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKAR 467
           H  D  +  N+     L+ GLC    L  A+     M ++GI+   F  + L   L K  
Sbjct: 401 H--DRGQPANVITYSSLIDGLCKNGHLDRAIALFNKMKDQGIRPNTFTFTILLDGLCKGG 458

Query: 468 K----EAVYEELLKK 478
           +    + V+++LL K
Sbjct: 459 RLKDAQEVFQDLLTK 473



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 80/345 (23%), Positives = 155/345 (44%), Gaps = 37/345 (10%)

Query: 104 WNLVVDLLGKNCLFDAMWDAIKSMKKENVLS-LATFASVFSSYVVADRVKDAITTFDVME 162
           ++ ++D L K  L    +     M  + + + + T++++   + +  ++K+AI   + M 
Sbjct: 202 YSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIEGKLKEAIGLLNEMV 261

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQFLRV-VDGRIKPDNDTYAILLEGWEKERDVA 221
                 +V+  N L+ A+C++GK  +A   L V +   +KPD  TY+ L++G+    +V 
Sbjct: 262 LKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVK 321

Query: 222 NAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDG--IYETVNSLKRMMERGCNPGM-T 278
            A+  F  M + +G  PD      +Y I +   C    + E +N  K M ++   PG+ T
Sbjct: 322 KAQHVFNAMSL-MGVTPD----VHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVT 376

Query: 279 FFKLAFEECLTGQNLRGAEFIWGAM--VGRIGFRPDTHMYNMMISLYCYSNETGAAMKLL 336
           +  L    C +G+      ++W  +  +   G   +   Y+ +I   C +     A+ L 
Sbjct: 377 YSSLIDGLCKSGR----IPYVWDLIDEMHDRGQPANVITYSSLIDGLCKNGHLDRAIALF 432

Query: 337 DEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDS 396
           ++M   G  P+  T+ IL + L KG +L +A  +F +++     LN         VY   
Sbjct: 433 NKMKDQGIRPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLN---------VYT-- 481

Query: 397 DDPYVAIKFWKYMIENHCSD-LSETGNLLVAGLCDMHMLPEAVKY 440
                    +  MI+ HC   L E    +++ + D   +P+AV +
Sbjct: 482 ---------YNVMIDGHCKQGLLEEALTMLSKMEDNGCIPDAVTF 517



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 64/277 (23%), Positives = 115/277 (41%), Gaps = 16/277 (5%)

Query: 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDV 160
           Y +N++VD L K          +  M K  V   + T++++   Y +   VK A   F+ 
Sbjct: 270 YTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNA 329

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERD 219
           M   G   DV     L++  C++    +A    + +  + + P   TY+ L++G  K   
Sbjct: 330 MSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGR 389

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTF 279
           +        EM       P NV  Y S +  L K    +   +    +M ++G  P    
Sbjct: 390 IPYVWDLIDEM--HDRGQPANVITYSSLIDGLCKNGH-LDRAIALFNKMKDQGIRPNTFT 446

Query: 280 FKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEM 339
           F +  +    G  L+ A+ ++  ++ + G+  + + YN+MI  +C       A+ +L +M
Sbjct: 447 FTILLDGLCKGGRLKDAQEVFQDLLTK-GYHLNVYTYNVMIDGHCKQGLLEEALTMLSKM 505

Query: 340 VYNGAFPDIQTYNILFEFLVK----------GRKLWE 366
             NG  PD  T+ I+   L K           +K+WE
Sbjct: 506 EDNGCIPDAVTFEIIIIALFKKDENGGNVGFDKKVWE 542



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/213 (23%), Positives = 96/213 (45%), Gaps = 13/213 (6%)

Query: 137  TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
            TF ++ +   +  +V  A+   D +   G + +  +  +L++ +C+ G T  A + LR +
Sbjct: 998  TFTTLINGLCLKGQVNKALHFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLRKI 1057

Query: 197  DGRI-KPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPD----NVPAYDSYLITL 251
            DGR+ KPD   Y  +++   K + V+ A   F EM ++ G   D    N   Y   ++  
Sbjct: 1058 DGRLTKPDVVMYNTIIDALCKHQLVSKAYGLFFEMNVK-GISADVVTYNTLIYGFCIVGK 1116

Query: 252  LKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEE-CLTGQNLRGAEFIWGAMVGRIGFR 310
            LK      E +  L +M+ +  NP +  + +  +  C  G++L        + +   G +
Sbjct: 1117 LK------EAIGLLNKMVLKTINPNVRTYNILVDALCKEGKDLLDESLSMLSKMEDNGCK 1170

Query: 311  PDTHMYNMMISLYCYSNETGAAMKLLDEMVYNG 343
             +   + ++IS     +E     KLL EM+  G
Sbjct: 1171 ANAVTFEIIISALFEKDENDKVEKLLHEMIARG 1203



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 58/224 (25%), Positives = 94/224 (41%), Gaps = 42/224 (18%)

Query: 154  AITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLE 212
            A++    +E  G + D+F LN L++  C  G+    +  L +++     PD  T+  L+ 
Sbjct: 945  AVSLSHRLELKGIQPDLFTLNILINCFCHMGQITFNFSILAKILKRGYHPDTITFTTLIN 1004

Query: 213  GWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERG 272
            G   +  V N    F + ++  G+  + V    SY  TL+ G   I +T  ++K + +  
Sbjct: 1005 GLCLKGQV-NKALHFHDKLLAQGFQLNQV----SYG-TLINGVCKIGDTRAAIKLLRK-- 1056

Query: 273  CNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAA 332
                                          + GR+  +PD  MYN +I   C       A
Sbjct: 1057 ------------------------------IDGRL-TKPDVVMYNTIIDALCKHQLVSKA 1085

Query: 333  MKLLDEMVYNGAFPDIQTYN-ILFEFLVKGRKLWEASGLFNEMV 375
              L  EM   G   D+ TYN +++ F + G KL EA GL N+MV
Sbjct: 1086 YGLFFEMNVKGISADVVTYNTLIYGFCIVG-KLKEAIGLLNKMV 1128


>gi|302770783|ref|XP_002968810.1| hypothetical protein SELMODRAFT_91015 [Selaginella moellendorffii]
 gi|300163315|gb|EFJ29926.1| hypothetical protein SELMODRAFT_91015 [Selaginella moellendorffii]
          Length = 545

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 85/347 (24%), Positives = 144/347 (41%), Gaps = 43/347 (12%)

Query: 106 LVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYG 165
           LV  LL    L +AM    + ++K N  +L T+  V      A RV++A   F  M   G
Sbjct: 83  LVDGLLKAGRLDEAMAVLEQMVEKGNSPTLKTYTVVIDGLSKAGRVEEARRIFVDMLGNG 142

Query: 166 CKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-----IKPDNDTYAILLEGWEKERDV 220
           C+ D F   +L+  +C+ GK  +A+   +  + R       PD  TY  L++G  K   +
Sbjct: 143 CRPDAFVYTALIKGLCKSGKPEEAYALYKEANARKHHATAVPDVVTYTSLIDGLCKAGRI 202

Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFF 280
             A++ F +  +E G+ PD V  Y S +  L K           L R +E GC       
Sbjct: 203 LEARQVFDDEAVERGFIPDAV-TYTSIIDGLCK-----------LGR-VEEGCE------ 243

Query: 281 KLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMV 340
              F E                M  R G+ PD   Y  +I  +  +     A ++  +M+
Sbjct: 244 --RFHE----------------MRNR-GYEPDAVTYAALIDGFMKAKMIPKAHRVYRQML 284

Query: 341 YNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPY 400
            +G      TYNI+ + L K  ++ EA   F  M +   V       A +  +    +  
Sbjct: 285 QSGTVVSTVTYNIILDGLCKAGRVAEAYATFLAMEERGCVATVVTYSALMDGFCSEGNVS 344

Query: 401 VAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEK 447
            A++ ++ M++  C     + N+++ GLC    L +A  Y + + ++
Sbjct: 345 AAVELFRRMLDRGCEPNLVSYNIIIRGLCRAGKLAKAYFYFEKLLQR 391



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 77/335 (22%), Positives = 137/335 (40%), Gaps = 63/335 (18%)

Query: 103 AWNLVVDLLGKNCLFDA-MWDAI-----KSMKKENVLSL-----------------ATFA 139
           A  + VD+LG  C  DA ++ A+     KS K E   +L                  T+ 
Sbjct: 131 ARRIFVDMLGNGCRPDAFVYTALIKGLCKSGKPEEAYALYKEANARKHHATAVPDVVTYT 190

Query: 140 SVFSSYVVADRVKDAITTFD--VMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVD 197
           S+      A R+ +A   FD   +E+ G   D     S++  +C+ G+  +  +    + 
Sbjct: 191 SLIDGLCKAGRILEARQVFDDEAVER-GFIPDAVTYTSIIDGLCKLGRVEEGCERFHEMR 249

Query: 198 GR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVP-------------- 242
            R  +PD  TYA L++G+ K + +  A + + +M ++ G     V               
Sbjct: 250 NRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQM-LQSGTVVSTVTYNIILDGLCKAGRV 308

Query: 243 --AYDSYLITLLKGC-----------DG------IYETVNSLKRMMERGCNPGMTFFKLA 283
             AY ++L    +GC           DG      +   V   +RM++RGC P +  + + 
Sbjct: 309 AEAYATFLAMEERGCVATVVTYSALMDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNII 368

Query: 284 FEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGA-AMKLLDEMVYN 342
                    L  A F +  ++ R    PD + +N  +   C   +T +  ++L + MV  
Sbjct: 369 IRGLCRAGKLAKAYFYFEKLLQR-RLCPDVYTFNAFLHGLCQRLDTVSDGVELFESMVSQ 427

Query: 343 GAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKN 377
           G  P++ +Y+IL + + +   L  A  +F EMV  
Sbjct: 428 GTSPNLHSYSILMDGICRAGGLEVALEIFREMVSR 462



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 56/249 (22%), Positives = 107/249 (42%), Gaps = 39/249 (15%)

Query: 127 MKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKT 186
           ++   V+S  T+  +      A RV +A  TF  ME+ GC   V   ++L+   C +G  
Sbjct: 284 LQSGTVVSTVTYNIILDGLCKAGRVAEAYATFLAMEERGCVATVVTYSALMDGFCSEGNV 343

Query: 187 IDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYD 245
             A + F R++D   +P+  +Y I++ G  +   +A A   F E +++    PD V  ++
Sbjct: 344 SAAVELFRRMLDRGCEPNLVSYNIIIRGLCRAGKLAKAYFYF-EKLLQRRLCPD-VYTFN 401

Query: 246 SYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVG 305
           ++L  L +  D + + V   + M+ +G +P +                            
Sbjct: 402 AFLHGLCQRLDTVSDGVELFESMVSQGTSPNL---------------------------- 433

Query: 306 RIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLW 365
                   H Y++++   C +     A+++  EMV  G  PD+  +N L  +L    ++ 
Sbjct: 434 --------HSYSILMDGICRAGGLEVALEIFREMVSRGVAPDVVVFNTLIRWLCIAGRVD 485

Query: 366 EASGLFNEM 374
           EA  +F E+
Sbjct: 486 EALEVFREL 494



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 73/332 (21%), Positives = 128/332 (38%), Gaps = 12/332 (3%)

Query: 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR 194
           +  F  V +      R+ +A +  +   + GC+ D    N  +  +C+  +  DA+Q L+
Sbjct: 7   MVAFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQLLK 66

Query: 195 VVD-GRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITL-- 251
            +D  +  P   TY  L++G  K   +  A     +MV     +  N P   +Y + +  
Sbjct: 67  KMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAVLEQMV-----EKGNSPTLKTYTVVIDG 121

Query: 252 LKGCDGIYETVNSLKRMMERGCNP-GMTFFKLAFEECLTGQNLRGAEFIWGAMVGR--IG 308
           L     + E       M+  GC P    +  L    C +G+          A   +    
Sbjct: 122 LSKAGRVEEARRIFVDMLGNGCRPDAFVYTALIKGLCKSGKPEEAYALYKEANARKHHAT 181

Query: 309 FRPDTHMYNMMISLYCYSNETGAAMKLL-DEMVYNGAFPDIQTYNILFEFLVKGRKLWEA 367
             PD   Y  +I   C +     A ++  DE V  G  PD  TY  + + L K  ++ E 
Sbjct: 182 AVPDVVTYTSLIDGLCKAGRILEARQVFDDEAVERGFIPDAVTYTSIIDGLCKLGRVEEG 241

Query: 368 SGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAG 427
              F+EM       +     A +  +M +     A + ++ M+++     + T N+++ G
Sbjct: 242 CERFHEMRNRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDG 301

Query: 428 LCDMHMLPEAVKYAKGMAEKGIQVTPFALSKL 459
           LC    + EA      M E+G   T    S L
Sbjct: 302 LCKAGRVAEAYATFLAMEERGCVATVVTYSAL 333



 Score = 46.6 bits (109), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 61/157 (38%), Gaps = 1/157 (0%)

Query: 273 CNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAA 332
           C+P M  F +        + L  A  +    V R G  PD   YN+ I   C +     A
Sbjct: 3   CSPDMVAFTVVINGLCREKRLDEAFSVLERAV-RAGCEPDYVTYNVFIDGLCKAERVDDA 61

Query: 333 MKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRV 392
            +LL +M      P   TY  L + L+K  +L EA  +  +MV+  N    +     +  
Sbjct: 62  FQLLKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAVLEQMVEKGNSPTLKTYTVVIDG 121

Query: 393 YMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLC 429
              +     A + +  M+ N C   +     L+ GLC
Sbjct: 122 LSKAGRVEEARRIFVDMLGNGCRPDAFVYTALIKGLC 158


>gi|449455320|ref|XP_004145401.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Cucumis sativus]
 gi|449471531|ref|XP_004153336.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Cucumis sativus]
          Length = 670

 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 85/385 (22%), Positives = 168/385 (43%), Gaps = 11/385 (2%)

Query: 81  PGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWD----AIKSMKKENVLSLA 136
           PG AV FF   A  L+ K +  ++N V++++ +   F   +        +  K    +L 
Sbjct: 140 PGEAVNFFHRMANDLHCKQTVKSFNSVLNVIIQEGDFSYAFKFYLHVFGANSKGFQPNLL 199

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           T+  +  +     ++  A+ TF  M    C  DVF  ++L++ +C++ +  +A   L  +
Sbjct: 200 TYNLIIKALCKLGQIDRAVDTFREMPLKNCNPDVFTYSTLMNGLCKERRVDEAVFLLDEM 259

Query: 197 DGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITL-LKG 254
                 P+  T+ +L++   K  D++ A K    M ++ G  P+ V  Y++ +  L LKG
Sbjct: 260 QAEGCLPNPVTFNVLIDALSKNGDLSRAAKLVDNMFLK-GCVPNEV-TYNTLIHGLCLKG 317

Query: 255 CDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTH 314
              + + ++ L++M+   C P    +       +  +       I  +M  R G + + +
Sbjct: 318 --KLDKALSLLEKMVSSKCVPNQVTYGTIINGLVKQRRAEDGVHILMSMEER-GQKANEY 374

Query: 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
           +Y+ +IS      ++  A++L  EM   G  P++  Y    + L +  K  EA  +  EM
Sbjct: 375 IYSSLISGLFKEGKSENAVRLWKEMAEKGCKPNVVVYGAFIDGLCRDEKPDEAEDILQEM 434

Query: 375 VKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHML 434
           +    + N     + ++ +    D   AI  WK M+           ++L+ GLC+   L
Sbjct: 435 LSKGFLPNAFTYSSLMKGFFKKGDSQKAILVWKEMMSQDMRHNVVCCSVLLNGLCESGRL 494

Query: 435 PEAVKYAKGMAEKGIQVTPFALSKL 459
            EA+     M  +G++    A S +
Sbjct: 495 REALTVWTHMLGEGLKPDVVAYSSM 519



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 88/355 (24%), Positives = 141/355 (39%), Gaps = 10/355 (2%)

Query: 117 FDAMWDAIKSMKKEN-VLSLATFASVFSSYVVADRVKDAITTFDVMEQ-YGCKHDVFALN 174
           F  +   +  MK+E  VL+   F  +F +   A    +A+  F  M     CK  V + N
Sbjct: 105 FHFIHQVLDRMKREGRVLTETIFILIFKACGKAHLPGEAVNFFHRMANDLHCKQTVKSFN 164

Query: 175 SLLSAICRDGKTIDAWQFLRVVDGR----IKPDNDTYAILLEGWEKERDVANAKKTFGEM 230
           S+L+ I ++G    A++F   V G      +P+  TY ++++   K   +  A  TF EM
Sbjct: 165 SVLNVIIQEGDFSYAFKFYLHVFGANSKGFQPNLLTYNLIIKALCKLGQIDRAVDTFREM 224

Query: 231 VIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTG 290
            ++   +PD V  Y + +  L K    + E V  L  M   GC P    F +  +     
Sbjct: 225 PLK-NCNPD-VFTYSTLMNGLCKE-RRVDEAVFLLDEMQAEGCLPNPVTFNVLIDALSKN 281

Query: 291 QNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQT 350
            +L  A  +   M  + G  P+   YN +I   C   +   A+ LL++MV +   P+  T
Sbjct: 282 GDLSRAAKLVDNMFLK-GCVPNEVTYNTLIHGLCLKGKLDKALSLLEKMVSSKCVPNQVT 340

Query: 351 YNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMI 410
           Y  +   LVK R+  +   +   M +     N     + +           A++ WK M 
Sbjct: 341 YGTIINGLVKQRRAEDGVHILMSMEERGQKANEYIYSSLISGLFKEGKSENAVRLWKEMA 400

Query: 411 ENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIK 465
           E  C          + GLC      EA    + M  KG     F  S L +   K
Sbjct: 401 EKGCKPNVVVYGAFIDGLCRDEKPDEAEDILQEMLSKGFLPNAFTYSSLMKGFFK 455



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 62/243 (25%), Positives = 106/243 (43%), Gaps = 7/243 (2%)

Query: 136 ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR- 194
            T+ ++ +  V   R +D +     ME+ G K + +  +SL+S + ++GK+ +A +  + 
Sbjct: 339 VTYGTIINGLVKQRRAEDGVHILMSMEERGQKANEYIYSSLISGLFKEGKSENAVRLWKE 398

Query: 195 VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG 254
           + +   KP+   Y   ++G  ++     A+    EM+ + G+ P N   Y S +    K 
Sbjct: 399 MAEKGCKPNVVVYGAFIDGLCRDEKPDEAEDILQEMLSK-GFLP-NAFTYSSLMKGFFKK 456

Query: 255 CDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTH 314
            D   + +   K MM +     +    +          LR A  +W  M+G  G +PD  
Sbjct: 457 GDS-QKAILVWKEMMSQDMRHNVVCCSVLLNGLCESGRLREALTVWTHMLGE-GLKPDVV 514

Query: 315 MYNMMISLYCYSNETGAAMKLLDEMVYN--GAFPDIQTYNILFEFLVKGRKLWEASGLFN 372
            Y+ MI   C        +KL  EM      + PD+ TYNILF  L +   L  A  L N
Sbjct: 515 AYSSMIKGLCDVGSVDKGLKLFYEMQCQEPKSRPDVVTYNILFNALCRQDNLTRAIDLLN 574

Query: 373 EMV 375
            M+
Sbjct: 575 SML 577



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 53/223 (23%), Positives = 97/223 (43%), Gaps = 5/223 (2%)

Query: 138 FASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VV 196
           ++S+ S      + ++A+  +  M + GCK +V    + +  +CRD K  +A   L+ ++
Sbjct: 376 YSSLISGLFKEGKSENAVRLWKEMAEKGCKPNVVVYGAFIDGLCRDEKPDEAEDILQEML 435

Query: 197 DGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD 256
                P+  TY+ L++G+ K+ D   A   + EM+ +   D  +     S L+  L    
Sbjct: 436 SKGFLPNAFTYSSLMKGFFKKGDSQKAILVWKEMMSQ---DMRHNVVCCSVLLNGLCESG 492

Query: 257 GIYETVNSLKRMMERGCNPGMTFFKLAFEE-CLTGQNLRGAEFIWGAMVGRIGFRPDTHM 315
            + E +     M+  G  P +  +    +  C  G   +G +  +         RPD   
Sbjct: 493 RLREALTVWTHMLGEGLKPDVVAYSSMIKGLCDVGSVDKGLKLFYEMQCQEPKSRPDVVT 552

Query: 316 YNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFL 358
           YN++ +  C  +    A+ LL+ M+  G  PD  T NI  E L
Sbjct: 553 YNILFNALCRQDNLTRAIDLLNSMLDEGCDPDSLTCNIFLETL 595



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 62/161 (38%)

Query: 308 GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEA 367
           GF+P+   YN++I   C   +   A+    EM      PD+ TY+ L   L K R++ EA
Sbjct: 193 GFQPNLLTYNLIIKALCKLGQIDRAVDTFREMPLKNCNPDVFTYSTLMNGLCKERRVDEA 252

Query: 368 SGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAG 427
             L +EM     + N       +     + D   A K    M    C     T N L+ G
Sbjct: 253 VFLLDEMQAEGCLPNPVTFNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTLIHG 312

Query: 428 LCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARK 468
           LC    L +A+   + M              +   L+K R+
Sbjct: 313 LCLKGKLDKALSLLEKMVSSKCVPNQVTYGTIINGLVKQRR 353


>gi|297833514|ref|XP_002884639.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330479|gb|EFH60898.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 864

 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 104/415 (25%), Positives = 175/415 (42%), Gaps = 59/415 (14%)

Query: 60  KTLI-RVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAW-----NLVVDLLGK 113
           K+L+  +S     QV+    S     V+FF W       KHS Y +     N ++ L+  
Sbjct: 61  KSLVSHMSPNVASQVISLQRSDNDICVRFFMWVC-----KHSSYCFDPTQKNQLLKLIVS 115

Query: 114 NCLFDAMWDAIKSMKKE------NVLSLAT-----------------FASVFSSYVVADR 150
           + LF    D I ++ +E       +L L +                 ++S+  S    D 
Sbjct: 116 SGLFRVAHDVIVALIRECSRCEKEMLKLISCFDELREVSGFRLNYPCYSSLLMSLAKLDL 175

Query: 151 VKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAI 209
              A  T+  ME  G    +    ++++A+C++G T  A  F+ +++      D+     
Sbjct: 176 GFLAYVTYRRMEADGFVVGMIDYRTIVNALCKNGYTEAAEMFMCKILKVGFLLDSHIVTS 235

Query: 210 LLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD-GIYETVNSLK-R 267
           LL G+ +  ++ +A K F  M  E    P++V    SY I +   C+ G  E    LK +
Sbjct: 236 LLLGFCRGLNLRDALKVFDLMSREGTCAPNSV----SYSILIHGLCEVGRLEEAFGLKDQ 291

Query: 268 MMERGCNPGMTFFKLAFEECLTGQNLRGAEF-IWGAMVGRIGFRPDTHMYNMMISLYCYS 326
           M E+GC P    + +  +  L  + L    F ++  M+ R G +P+ H Y ++I   C  
Sbjct: 292 MGEKGCQPSTRTYTVLIKA-LCDRGLIDKAFNLFDEMIAR-GCKPNVHTYTVLIDGLCRD 349

Query: 327 NETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENC 386
            +   A  +  +MV +G FP + TYN L     K  ++  A  L   M K         C
Sbjct: 350 GKIEEANGVCRKMVKDGIFPSVITYNALINGYCKDGRVVPAFELLTVMEKRA-------C 402

Query: 387 RAAVRVYMD-------SDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLC-DMHM 433
           +  VR + +          PY A+   K M++N  S    + N+L+ GLC + HM
Sbjct: 403 KPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHM 457



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 74/349 (21%), Positives = 143/349 (40%), Gaps = 37/349 (10%)

Query: 98  KHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAIT 156
           K + + + +++D L ++   +      + M K+ +  S+ T+ ++ + Y    RV  A  
Sbjct: 333 KPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDGIFPSVITYNALINGYCKDGRVVPAFE 392

Query: 157 TFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWE 215
              VME+  CK +V   N L+  +CR GK   A   L R++D  + PD  +Y +L++G  
Sbjct: 393 LLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLC 452

Query: 216 KERDVANAKKTFGEM--------------VIEVGWDPDNVPAYDSYLITLLKGCDGIYET 261
           +E  +  A K    M              +I             ++L  +L+    + E 
Sbjct: 453 REGHMNVAYKLLTSMNSFDLEPDCLTFTAIINAFCKQGKADVASAFLGLMLRKGISLDEV 512

Query: 262 VNSLKRMMERGCNPGMTFFKLAFEECLTGQNL---------------RGAEFIWG-AMVG 305
             +   +++  CN G T   L   E L    +               +G +     AM+G
Sbjct: 513 TGT--TLIDGVCNVGKTRDALFILETLVKMRMLTTPHSLNVILDMLSKGCKLKEELAMLG 570

Query: 306 RI---GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGR 362
           +I   G  P    Y  ++     S +   + ++L+ M  +G  P++  Y I+   L +  
Sbjct: 571 KINKLGLVPSVVTYTTLVDGLIRSGDISGSFRMLELMKLSGCLPNVYPYTIIINGLCQFG 630

Query: 363 KLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIE 411
           ++ EA  L + M  +    NH      V+ Y+++     A++  + M+E
Sbjct: 631 RVEEAEKLLSAMQDSGVSPNHVTYTVMVKGYVNNGKLDRALETVRAMVE 679



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 80/342 (23%), Positives = 134/342 (39%), Gaps = 42/342 (12%)

Query: 147 VADR--VKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR--VVDGRIKP 202
           + DR  +  A   FD M   GCK +V     L+  +CRDGK  +A    R  V DG I P
Sbjct: 311 LCDRGLIDKAFNLFDEMIARGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDG-IFP 369

Query: 203 DNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETV 262
              TY  L+ G+ K+  V  A +     V+E      NV  ++  +  L +     Y+ V
Sbjct: 370 SVITYNALINGYCKDGRVVPAFELL--TVMEKRACKPNVRTFNELMEGLCR-VGKPYKAV 426

Query: 263 NSLKRMMERGCNPGMTFFKLAFE-------------------------ECLTGQNL---- 293
           + LKRM++ G +P +  + +  +                         +CLT   +    
Sbjct: 427 HLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNVAYKLLTSMNSFDLEPDCLTFTAIINAF 486

Query: 294 --RGAEFIWGAMVG---RIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDI 348
             +G   +  A +G   R G   D      +I   C   +T  A+ +L+ +V        
Sbjct: 487 CKQGKADVASAFLGLMLRKGISLDEVTGTTLIDGVCNVGKTRDALFILETLVKMRMLTTP 546

Query: 349 QTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKY 408
            + N++ + L KG KL E   +  ++ K   V +       V   + S D   + +  + 
Sbjct: 547 HSLNVILDMLSKGCKLKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDISGSFRMLEL 606

Query: 409 MIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQ 450
           M  + C        +++ GLC    + EA K    M + G+ 
Sbjct: 607 MKLSGCLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVS 648


>gi|356510082|ref|XP_003523769.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 602

 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 81/301 (26%), Positives = 123/301 (40%), Gaps = 67/301 (22%)

Query: 169 DVFALNSLLSAICRDGKTIDAWQFLRVVD--GRIKPDNDTYAILLEGWEKERDVANAKKT 226
           DV A  SL+   CR GKT  A + + +++  G + PD  TY +L+ G+ K  ++  A + 
Sbjct: 140 DVIACTSLIRGFCRSGKTKKATRIMEILENSGAV-PDVITYNVLIGGYCKSGEIDKALEV 198

Query: 227 FGEMVIEVGWDPDNVPAYDSYLITLLKGCDG--IYETVNSLKRMMERGCNPGMTFFKLAF 284
              M +     PD V  Y++ L +L   CD   + E +  L R ++R C           
Sbjct: 199 LERMSVA----PD-VVTYNTILRSL---CDSGKLKEAMEVLDRQLQREC----------- 239

Query: 285 EECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGA 344
                                     PD   Y ++I   C  +  G AMKLLDEM   G 
Sbjct: 240 -------------------------YPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGC 274

Query: 345 FPDIQTYNILFEFLVKGRKLWEASGLFNEM--------VKNENVLNHENCRAAVRVYMDS 396
            PD+ TYN+L   + K  +L EA    N M        V   N++    C      +MD+
Sbjct: 275 KPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCKPNVITHNIILRSMCSTG--RWMDA 332

Query: 397 DDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFAL 456
           +      +    M+   CS    T N+L+  LC   +L  A+   + M + G    P +L
Sbjct: 333 E------RLLSDMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHG--CVPNSL 384

Query: 457 S 457
           S
Sbjct: 385 S 385



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 84/342 (24%), Positives = 151/342 (44%), Gaps = 13/342 (3%)

Query: 116 LFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNS 175
           L +AM    + +++E    + T+  +  +      V  A+   D M + GCK DV   N 
Sbjct: 224 LKEAMEVLDRQLQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNV 283

Query: 176 LLSAICRDGKTIDAWQFLRVVDG-RIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEV 234
           L++ IC++G+  +A +FL  +     KP+  T+ I+L          +A++   +M +  
Sbjct: 284 LINGICKEGRLDEAIKFLNNMPSYGCKPNVITHNIILRSMCSTGRWMDAERLLSDM-LRK 342

Query: 235 GWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNP-GMTFFKLAFEECLTGQNL 293
           G  P  V    + LI  L     +   ++ L++M + GC P  +++  L    C   +  
Sbjct: 343 GCSPSVVTF--NILINFLCRKRLLGRAIDVLEKMPKHGCVPNSLSYNPLLHGFCQEKKMD 400

Query: 294 RGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNI 353
           R  E++   MV R G  PD   YN +++  C   +  AA+++L+++   G  P + TYN 
Sbjct: 401 RAIEYLE-IMVSR-GCYPDIVTYNTLLTALCKDGKVDAAVEILNQLSSKGCSPVLITYNT 458

Query: 354 LFEFLVKGRKLWEASGLFNEMVKN---ENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMI 410
           + + L K  K   A  L  EM +     +++ +      +      D+   AIK +  M 
Sbjct: 459 VIDGLTKVGKTEYAVELLEEMRRKGLKPDIITYSTLLRGLGREGKVDE---AIKIFHDME 515

Query: 411 ENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVT 452
                  + T N ++ GLC       A+ +   M EKG + T
Sbjct: 516 GLSIKPSAVTYNAIMLGLCKAQQTSRAIDFLAYMVEKGCKPT 557



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 85/360 (23%), Positives = 152/360 (42%), Gaps = 28/360 (7%)

Query: 110 LLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKH 168
           L+G  C    +  A++ +++ +V   + T+ ++  S   + ++K+A+   D   Q  C  
Sbjct: 182 LIGGYCKSGEIDKALEVLERMSVAPDVVTYNTILRSLCDSGKLKEAMEVLDRQLQRECYP 241

Query: 169 DVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTF 227
           DV     L+ A C D     A + L  +  +  KPD  TY +L+ G  KE  +  A K  
Sbjct: 242 DVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFL 301

Query: 228 GEMVIEVGWDPDNVPAYDSYLITLLKGCDGI--YETVNSLKRMMERGCNPGMTFFKLAFE 285
             M    G  P+ +    ++ I L   C      +    L  M+ +GC+P +  F +   
Sbjct: 302 NNMP-SYGCKPNVI----THNIILRSMCSTGRWMDAERLLSDMLRKGCSPSVVTFNILIN 356

Query: 286 ECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAF 345
             L  + L G        + + G  P++  YN ++  +C   +   A++ L+ MV  G +
Sbjct: 357 -FLCRKRLLGRAIDVLEKMPKHGCVPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCY 415

Query: 346 PDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKF 405
           PDI TYN L   L K  K+  A  + N+       L+ + C   +  Y    D    +  
Sbjct: 416 PDIVTYNTLLTALCKDGKVDAAVEILNQ-------LSSKGCSPVLITYNTVIDGLTKVGK 468

Query: 406 WKYMIENHCSDLSETG--------NLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALS 457
            +Y +E    ++   G        + L+ GL     + EA+K    M  +G+ + P A++
Sbjct: 469 TEYAVE-LLEEMRRKGLKPDIITYSTLLRGLGREGKVDEAIKIFHDM--EGLSIKPSAVT 525



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 60/259 (23%), Positives = 103/259 (39%), Gaps = 41/259 (15%)

Query: 100 SPYAWNLVVDLLGKNCLFDAMWDAIKSMKKEN-VLSLATFASVFSSYVVADRVKDAITTF 158
           S   +N++++ L +  L     D ++ M K   V +  ++  +   +    ++  AI   
Sbjct: 347 SVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCVPNSLSYNPLLHGFCQEKKMDRAIEYL 406

Query: 159 DVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKE 217
           ++M   GC  D+   N+LL+A+C+DGK   A + L  +  +   P   TY  +++G  K 
Sbjct: 407 EIMVSRGCYPDIVTYNTLLTALCKDGKVDAAVEILNQLSSKGCSPVLITYNTVIDGLTKV 466

Query: 218 RDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGM 277
                A +   EM  + G  PD +  Y     TLL+G     +   ++K           
Sbjct: 467 GKTEYAVELLEEMRRK-GLKPD-IITYS----TLLRGLGREGKVDEAIK----------- 509

Query: 278 TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLD 337
                                I+  M G +  +P    YN ++   C + +T  A+  L 
Sbjct: 510 ---------------------IFHDMEG-LSIKPSAVTYNAIMLGLCKAQQTSRAIDFLA 547

Query: 338 EMVYNGAFPDIQTYNILFE 356
            MV  G  P   TY IL E
Sbjct: 548 YMVEKGCKPTEATYTILIE 566


>gi|242066030|ref|XP_002454304.1| hypothetical protein SORBIDRAFT_04g028250 [Sorghum bicolor]
 gi|241934135|gb|EES07280.1| hypothetical protein SORBIDRAFT_04g028250 [Sorghum bicolor]
          Length = 638

 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 106/437 (24%), Positives = 178/437 (40%), Gaps = 49/437 (11%)

Query: 51  SPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVK--FFRWSAYQLNDKHSPYAWNLVV 108
            P  E  L+  ++RV    V +V+K   +  G  VK  FFRW+A + N +H    +  ++
Sbjct: 74  GPDAEKALEVLMLRVDHWLVREVMK---TDIGVNVKMQFFRWAAKRRNYEHDTSTYMALI 130

Query: 109 DLLGKNCLFDAMWDAIKSMKKEN--VLSLATFASVFSSYVVADRVKDAITTFDVMEQYGC 166
             L     +  MW  I+ M +    V++    + V      A  V  AI  F  ++   C
Sbjct: 131 RCLEVVEQYGEMWKMIQEMVRNPICVVTPTELSEVVRMLGNAKMVSKAIAIFYQIKTRKC 190

Query: 167 KHDVFALNSLLSAICRDGKTIDAWQFLR--VVDGRIKPDNDTYAILLEGWEKERDVANAK 224
           +    A NS++  +  +G+     +       +G   PD  TY+ L+  + K     +A 
Sbjct: 191 QPTAQAYNSMIIMLMHEGQYGKVHELYNEMSTEGHCFPDTMTYSALISAFCKLGRRDSAT 250

Query: 225 KTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGM-TFFKLA 283
           +   EM  E G  P       + LITL    D ++  ++  + M  + C P + T+ +L 
Sbjct: 251 QLLNEMK-ENGMQPTT--KIYTMLITLFFKLDDVHGALSLFEEMRHQYCRPDVFTYTELI 307

Query: 284 FEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNG 343
                 G+      F +   + R G RPDT + N MI+    +     AMKL  EM    
Sbjct: 308 RGLGKAGRIDEAYHFFYE--MQREGCRPDTVVMNNMINFLGKAGRLDDAMKLFQEMGTLR 365

Query: 344 AFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAI 403
             P + TYN + + L + +                        RA       S+ P    
Sbjct: 366 CIPSVVTYNTIIKALFESKS-----------------------RA-------SEVP---- 391

Query: 404 KFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQIL 463
            +++ M E+  S  S T ++L+ G C  + + +A+   + M EKG    P A   L   L
Sbjct: 392 SWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDAL 451

Query: 464 IKARKEAVYEELLKKCK 480
            KA++  +  EL ++ K
Sbjct: 452 GKAKRYDLACELFQELK 468



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 63/119 (52%), Gaps = 4/119 (3%)

Query: 101 PYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYV-VADRVKDAITTFD 159
           P A+  ++D LGK   +D   +  + +K+    S A   +V   ++  A R+ DAI  FD
Sbjct: 441 PAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMFD 500

Query: 160 VMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVD--GRIKPDNDTYAILLEGWEK 216
            M + GC  DV+A N+L+S + R G   +A   +R +   G I PD ++Y I+L G  K
Sbjct: 501 EMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCI-PDINSYNIILNGLAK 558



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 62/264 (23%), Positives = 111/264 (42%), Gaps = 11/264 (4%)

Query: 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYV-VADRVKDAITTFDV 160
           + +  ++  LGK    D  +     M++E         +   +++  A R+ DA+  F  
Sbjct: 301 FTYTELIRGLGKAGRIDEAYHFFYEMQREGCRPDTVVMNNMINFLGKAGRLDDAMKLFQE 360

Query: 161 MEQYGCKHDVFALNSLLSAICRD---GKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKE 217
           M    C   V   N+++ A+         + +W F R+ +  I P + TY+IL++G+ K 
Sbjct: 361 MGTLRCIPSVVTYNTIIKALFESKSRASEVPSW-FERMKESGISPSSFTYSILIDGFCKT 419

Query: 218 RDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGC-NPG 276
             +  A     EM  E G+ P   PA    LI  L G    Y+    L + ++  C +  
Sbjct: 420 NRMEKAMMLLEEMD-EKGFPP--CPAAYCSLIDAL-GKAKRYDLACELFQELKENCGSSS 475

Query: 277 MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLL 336
              + +  +       L  A  ++  M  ++G  PD + YN ++S    +     A+  +
Sbjct: 476 ARVYAVMIKHLGKAGRLDDAINMFDEM-NKLGCAPDVYAYNALMSGLARTGMLDEALSTM 534

Query: 337 DEMVYNGAFPDIQTYNILFEFLVK 360
             M  +G  PDI +YNI+   L K
Sbjct: 535 RRMQEHGCIPDINSYNIILNGLAK 558



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 61/279 (21%), Positives = 114/279 (40%), Gaps = 19/279 (6%)

Query: 105 NLVVDLLGKNCLFDAMWDAIKSMKKENVL----SLATFASVFSS-YVVADRVKDAITTFD 159
           N +++ LGK    D   DA+K  ++   L    S+ T+ ++  + +    R  +  + F+
Sbjct: 339 NNMINFLGKAGRLD---DAMKLFQEMGTLRCIPSVVTYNTIIKALFESKSRASEVPSWFE 395

Query: 160 VMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKER 218
            M++ G     F  + L+   C+  +   A   L  +D +   P    Y  L++   K +
Sbjct: 396 RMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAK 455

Query: 219 DVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMT 278
               A + F E+    G     V A    +I  L     + + +N    M + GC P + 
Sbjct: 456 RYDLACELFQELKENCGSSSARVYAV---MIKHLGKAGRLDDAINMFDEMNKLGCAPDV- 511

Query: 279 FFKLAFEECLTGQNLRGAEFIWGAMVGRI---GFRPDTHMYNMMISLYCYSNETGAAMKL 335
               A+   ++G    G      + + R+   G  PD + YN++++    +     AM++
Sbjct: 512 ---YAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEM 568

Query: 336 LDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
           L  M  +   PD+ +YN +   L       EA+ L  EM
Sbjct: 569 LSNMKQSTVRPDVVSYNTVLGALSHAGMFEEAAKLMEEM 607


>gi|302142966|emb|CBI20261.3| unnamed protein product [Vitis vinifera]
          Length = 509

 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 96/420 (22%), Positives = 165/420 (39%), Gaps = 50/420 (11%)

Query: 39  IKTLCEIIANTPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAY-QLND 97
           ++ L +   ++    +E  L +  + ++ + V  VLK   S   PA  FF W++   +  
Sbjct: 90  VQNLLKTYRDSSVSEIEGALHQCRLSLTDDLVLDVLKRHRSDWRPAYVFFNWASRCGIES 149

Query: 98  KHSPYAW--NLVVDLLGKNCLFDAMWDAIKSM-KKENVLSLATFASVFSSYVVADRVKDA 154
            +SP     N ++D+LG+   F  M      M K++ +++  TF  + + Y  A + ++A
Sbjct: 150 GYSPGCGVHNEILDILGRMRRFHEMTQLFDEMSKRKGLVNERTFGVLLNRYAAAHKTEEA 209

Query: 155 ITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYAILLEG 213
                   +      + ++N +L+  C  G   +A +F   ++  + KPD  TY I +  
Sbjct: 210 AVKIFYKRKGAW---IRSMNVILNGWCVLGSLREAKRFWNDIITSKCKPDKFTYGIFINS 266

Query: 214 WEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGC 273
             K   ++ A K F  M  E G +PD   A  + +I  L     I E +  L+ M ER C
Sbjct: 267 LTKAGKLSTAVKLFQAM-WEKGCNPD--VAICNCIIDALCFKKRIPEALEVLREMNERDC 323

Query: 274 NPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAM 333
                                               +PD   YN +I   C         
Sbjct: 324 ------------------------------------QPDVATYNSLIKHLCKIQRFEKVY 347

Query: 334 KLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVY 393
           +LLD+M   G  P+ +TY  L   L   +K  E  G+   M +N   +N +     +++Y
Sbjct: 348 ELLDDMEQKGCLPNARTYGYL---LKSTKKPEEVPGILERMERNGCRMNSDCYNLILKLY 404

Query: 394 MDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTP 453
           MD             M  N       T  +++ GL D   + +A+ Y K M   G+   P
Sbjct: 405 MDWGYELKLRSTLDEMERNGMGPDQRTYTIMIHGLYDKGRMDDALSYFKQMTLMGMVPEP 464


>gi|224071479|ref|XP_002303480.1| predicted protein [Populus trichocarpa]
 gi|222840912|gb|EEE78459.1| predicted protein [Populus trichocarpa]
          Length = 836

 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 82/347 (23%), Positives = 147/347 (42%), Gaps = 11/347 (3%)

Query: 138 FASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVV 196
           F+++ +++    R  DAI  F  ME+ G   +V   N+++  +C+ G+  +A++F  ++V
Sbjct: 259 FSTMINAFCKGHREDDAIGLFSKMEKLGVAPNVVTYNNIIHGLCKSGRLDEAYRFKEKMV 318

Query: 197 DGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG-C 255
             ++ P   TY++ + G  K   +  A     EM  E+G+ P+ V  Y+    TL+ G C
Sbjct: 319 KEKVSPSLITYSVFINGLIKLEKIDEANCVLKEMS-ELGFVPNEV-VYN----TLIDGYC 372

Query: 256 --DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDT 313
               I E +     M+ +G +P         +       +  AE +   M+GR G   + 
Sbjct: 373 KMGNISEALKIRDDMLSKGISPNSVTLNSLIQGFCKSDQIGQAENVLEEMIGR-GLPINQ 431

Query: 314 HMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNE 373
             ++M+I+  C       A+  + EM+     P+      L   L K  K  EA  L+  
Sbjct: 432 GSFSMVINWLCLKFRFVTALHFIREMLLRNLRPNDGLLTTLVSGLCKAGKQGEAVELWCR 491

Query: 374 MVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHM 433
           ++    V N     A +     + +    +K  + M+E        T N L++G C    
Sbjct: 492 LLGKGFVPNIVTSNALIHGLCKAGNMQETLKLLRDMLERGLVFDRITYNTLISGCCKEGK 551

Query: 434 LPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKCK 480
           + E  +  + M +KGIQ   +  + L   L  A K      L  +CK
Sbjct: 552 VKEGFELKEEMVKKGIQPDIYTFNLLLHGLCNADKIDEASRLWHECK 598



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 67/318 (21%), Positives = 143/318 (44%), Gaps = 11/318 (3%)

Query: 136 ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRV 195
            T  S+   +  +D++  A    + M   G   +  + + +++ +C   + + A  F+R 
Sbjct: 397 VTLNSLIQGFCKSDQIGQAENVLEEMIGRGLPINQGSFSMVINWLCLKFRFVTALHFIRE 456

Query: 196 VDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG 254
           +  R ++P++     L+ G  K      A + +  ++ + G+ P+ V +  + LI  L  
Sbjct: 457 MLLRNLRPNDGLLTTLVSGLCKAGKQGEAVELWCRLLGK-GFVPNIVTS--NALIHGLCK 513

Query: 255 CDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGA---EFIWGAMVGRIGFRP 311
              + ET+  L+ M+ERG    + F ++ +   ++G    G     F     + + G +P
Sbjct: 514 AGNMQETLKLLRDMLERG----LVFDRITYNTLISGCCKEGKVKEGFELKEEMVKKGIQP 569

Query: 312 DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLF 371
           D + +N+++   C +++   A +L  E   NG  P++ TY ++ +   K  K+ E   L 
Sbjct: 570 DIYTFNLLLHGLCNADKIDEASRLWHECKKNGYVPNVYTYGVMIDGYCKANKVEEGENLL 629

Query: 372 NEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDM 431
           NE+V  +  LN     + +R Y  + +   A +    M          T + L+ GLC++
Sbjct: 630 NELVSKKLELNSVVYNSLIRAYCINGNMNAAFRLRDDMKSRGVLLSCATYSSLMHGLCNI 689

Query: 432 HMLPEAVKYAKGMAEKGI 449
            ++ +A      M ++G+
Sbjct: 690 GLVDDAKHLLDEMRKEGL 707



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 70/316 (22%), Positives = 124/316 (39%), Gaps = 40/316 (12%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-F 192
           SL T   + SS V A+ +K +   +D +   G   DV   +++++A C+  +  DA   F
Sbjct: 220 SLKTCTFLLSSLVKANELKKSYEVYDFICLGGIIPDVHLFSTMINAFCKGHREDDAIGLF 279

Query: 193 LRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
            ++    + P+  TY  ++ G  K   +  A + F E +++    P  +  Y  ++  L+
Sbjct: 280 SKMEKLGVAPNVVTYNNIIHGLCKSGRLDEAYR-FKEKMVKEKVSPSLI-TYSVFINGLI 337

Query: 253 KGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD 312
           K  + I E    LK M E                                    +GF P+
Sbjct: 338 K-LEKIDEANCVLKEMSE------------------------------------LGFVPN 360

Query: 313 THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFN 372
             +YN +I  YC       A+K+ D+M+  G  P+  T N L +   K  ++ +A  +  
Sbjct: 361 EVVYNTLIDGYCKMGNISEALKIRDDMLSKGISPNSVTLNSLIQGFCKSDQIGQAENVLE 420

Query: 373 EMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMH 432
           EM+     +N  +    +           A+ F + M+  +          LV+GLC   
Sbjct: 421 EMIGRGLPINQGSFSMVINWLCLKFRFVTALHFIREMLLRNLRPNDGLLTTLVSGLCKAG 480

Query: 433 MLPEAVKYAKGMAEKG 448
              EAV+    +  KG
Sbjct: 481 KQGEAVELWCRLLGKG 496



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 75/344 (21%), Positives = 134/344 (38%), Gaps = 10/344 (2%)

Query: 138 FASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VV 196
             ++ S    A +  +A+  +  +   G   ++   N+L+  +C+ G   +  + LR ++
Sbjct: 469 LTTLVSGLCKAGKQGEAVELWCRLLGKGFVPNIVTSNALIHGLCKAGNMQETLKLLRDML 528

Query: 197 DGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD 256
           +  +  D  TY  L+ G  KE  V    +   EMV + G  PD +  ++  L+  L   D
Sbjct: 529 ERGLVFDRITYNTLISGCCKEGKVKEGFELKEEMV-KKGIQPD-IYTFN-LLLHGLCNAD 585

Query: 257 GIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMY 316
            I E         + G  P +  + +  +       +   E +   +V +     ++ +Y
Sbjct: 586 KIDEASRLWHECKKNGYVPNVYTYGVMIDGYCKANKVEEGENLLNELVSK-KLELNSVVY 644

Query: 317 NMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK 376
           N +I  YC +    AA +L D+M   G      TY+ L   L     + +A  L +EM K
Sbjct: 645 NSLIRAYCINGNMNAAFRLRDDMKSRGVLLSCATYSSLMHGLCNIGLVDDAKHLLDEMRK 704

Query: 377 NENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSE-TGNLLVAGLCDMHMLP 435
            E +L +  C   +            +      + +H    ++ T  +++ G C +    
Sbjct: 705 -EGLLPNVVCYTTIIGGYSKLGQMNKVNIVLQEMSSHNIHPNKFTYTIMIDGFCKLGKTK 763

Query: 436 EAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKC 479
           EA K    M EKGI       +     L    KE   EE  K C
Sbjct: 764 EAAKLLNEMTEKGILPDAVTYNAFTNGLC---KEGKVEEAFKVC 804



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 60/277 (21%), Positives = 109/277 (39%), Gaps = 46/277 (16%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDA---WQFL 193
           T+ ++ S      +VK+     + M + G + D++  N LL  +C   K  +A   W   
Sbjct: 538 TYNTLISGCCKEGKVKEGFELKEEMVKKGIQPDIYTFNLLLHGLCNADKIDEASRLWHEC 597

Query: 194 RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMV---IEVGWDPDNVPAYDSYLIT 250
           +  +G + P+  TY ++++G+ K   V   +    E+V   +E+     N   Y+S +  
Sbjct: 598 KK-NGYV-PNVYTYGVMIDGYCKANKVEEGENLLNELVSKKLEL-----NSVVYNSLIRA 650

Query: 251 LLKGCD--------------GIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGA 296
                +              G+  +  +   +M   CN G+        + +  + L   
Sbjct: 651 YCINGNMNAAFRLRDDMKSRGVLLSCATYSSLMHGLCNIGLVDDAKHLLDEMRKEGLLPN 710

Query: 297 EFIWGAMVG---RIG----------------FRPDTHMYNMMISLYCYSNETGAAMKLLD 337
              +  ++G   ++G                  P+   Y +MI  +C   +T  A KLL+
Sbjct: 711 VVCYTTIIGGYSKLGQMNKVNIVLQEMSSHNIHPNKFTYTIMIDGFCKLGKTKEAAKLLN 770

Query: 338 EMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
           EM   G  PD  TYN     L K  K+ EA  + +EM
Sbjct: 771 EMTEKGILPDAVTYNAFTNGLCKEGKVEEAFKVCDEM 807


>gi|414865591|tpg|DAA44148.1| TPA: hypothetical protein ZEAMMB73_616668 [Zea mays]
          Length = 838

 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 98/437 (22%), Positives = 177/437 (40%), Gaps = 29/437 (6%)

Query: 63  IRVSQETVEQVLKFS-YSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMW 121
           +R+ ++ +E   +   +S  GP   F   +A  L    +   +N+++D L  +   +A +
Sbjct: 347 VRLLKKIIEAFCRQGDFSTVGP---FINENAVHLKPGSAVLLYNVILDGLINHGEVEAAY 403

Query: 122 DAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDV--------------------M 161
             + SM + +             +V+ + VK    +F++                    M
Sbjct: 404 QLLSSMVRGDQRVSDDDTVGVHIFVITEDVKPNSDSFNIVVCGLCKVKKLDLALALTKDM 463

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDV 220
              GCK  +   N L+  +C  GK  +A++ F ++ D  +KP   TY  LL G  + +D 
Sbjct: 464 VGLGCKGKLLMFNDLILELCNSGKLDEAYEIFNQMKDLGLKPSEFTYNSLLYGICRRKDT 523

Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFF 280
           + A     EM       P      D      L G   I E +  L  M+E G  P +  +
Sbjct: 524 SAAADLLREMRAN-AHKPWIKNCTDMVQQLCLSG--RITEALQFLDGMLELGFLPDIVTY 580

Query: 281 KLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMV 340
             A        ++  A  ++  +  +  + PD   +N++I+ +  + +   A ++++EM+
Sbjct: 581 SAAMNGMCKVGDIENALGLFLDISSKC-YLPDVVAHNILINGFRKAGKFDEAQEIMEEML 639

Query: 341 YNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPY 400
             G  P + TYN++ +   K   + +A     +M+  E         + +    ++  P 
Sbjct: 640 SKGMLPSVVTYNLMIDIWCKSGSIDKAITCVYKMIDEEKPPTVVTYTSLLDGLCNAGRPD 699

Query: 401 VAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLK 460
            AI  W  M E  CS        LV GLC    +  AV Y + M  KG  +  F+L  L 
Sbjct: 700 EAIVLWCKMREKGCSPNGIAYTALVNGLCKCGRMETAVNYYEEMKTKGFDLDIFSLLNLT 759

Query: 461 QILIKARKEAVYEELLK 477
            +LI   + +   ELLK
Sbjct: 760 NLLIAQGQASKGCELLK 776



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 87/393 (22%), Positives = 147/393 (37%), Gaps = 33/393 (8%)

Query: 84  AVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFS 143
           A+ FFRW+A Q   +HS Y+ N +  LL  +        A  ++     ++      +  
Sbjct: 84  ALDFFRWAAEQPGFRHSCYSLNAMASLLPPHQRAHLDRLATDALVSRCSMTPGALGFLLR 143

Query: 144 SYVVADRVKDAITTFDVMEQ-YGCKHDVFALNSLLSAICRDGKTIDA---WQFLRVVDGR 199
               A     A   FD  +    C  + +  N LL A+ + G+  DA    Q + V  G 
Sbjct: 144 RLGAAGLPDTAARVFDAAKTTLSCAPNSYTYNCLLDALAKAGRAEDAEARLQEMVVTCGD 203

Query: 200 IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIY 259
              D  T   LL+ +       +A      M  +  W  ++V    + LI        + 
Sbjct: 204 ESVDRYTLTSLLQCYCNAGRPEDASAVLQRMS-KRAWVDEHVL---TMLIVAYSKWGKVE 259

Query: 260 ETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMM 319
           + V  L RM      P      +          +  A  ++G M    GF  D  MY+++
Sbjct: 260 DAVELLGRMEALDMRPNEKTLSVLVHGLARQGRVDVAMNMFGKMAS-YGFSVDLAMYSVL 318

Query: 320 ISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNE------ 373
           I   C+ NE G A+KL ++M  +   PD++    + E   +           NE      
Sbjct: 319 IEGLCHGNEMGKAVKLFEDMKRDRITPDVRLLKKIIEAFCRQGDFSTVGPFINENAVHLK 378

Query: 374 -----MVKN---ENVLNHENCRAAVRVYMD--------SDDPYVAIKFWKYMIENHCSDL 417
                ++ N   + ++NH    AA ++           SDD  V +    ++I       
Sbjct: 379 PGSAVLLYNVILDGLINHGEVEAAYQLLSSMVRGDQRVSDDDTVGVHI--FVITEDVKPN 436

Query: 418 SETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQ 450
           S++ N++V GLC +  L  A+   K M   G +
Sbjct: 437 SDSFNIVVCGLCKVKKLDLALALTKDMVGLGCK 469


>gi|242046162|ref|XP_002460952.1| hypothetical protein SORBIDRAFT_02g038080 [Sorghum bicolor]
 gi|241924329|gb|EER97473.1| hypothetical protein SORBIDRAFT_02g038080 [Sorghum bicolor]
          Length = 796

 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 78/280 (27%), Positives = 128/280 (45%), Gaps = 16/280 (5%)

Query: 102 YAWNLVVDLLGKNCLFD---AMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTF 158
           Y +N ++    +  L+     M+D +K+   E      TF S+   Y  A R ++AI   
Sbjct: 257 YTYNTLISCCRRRGLYREAAQMFDEMKAAGFEP--DKVTFNSLLDVYGKARRHEEAIGVL 314

Query: 159 DVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKE 217
             ME  GC   V   NSL+SA  +DG   +A +  + ++ R +KPD  TY  L+ G ++ 
Sbjct: 315 KKMENAGCTPSVVTYNSLISAYVKDGLLEEALELKQEMEFRGMKPDVVTYTTLISGLDRI 374

Query: 218 RDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIY-ETVNSLKRMMERGCNPG 276
             +  A  T+ EMV   G  P N+  Y++  +  + G  G + E +     +   G  P 
Sbjct: 375 GKIDAALATYSEMV-RNGCSP-NLCTYNA--LIKMHGVRGKFTEMMIVFDDLRSAGYVPD 430

Query: 277 MTFFKLAFEECLTGQNLRGAEFIWGAM--VGRIGFRPDTHMYNMMISLYCYSNETGAAMK 334
           +  +       + GQN   +E + G    + + G+ P+   Y  +IS Y        AM+
Sbjct: 431 VVTWNTLL--AVFGQNGLDSE-VSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDQAME 487

Query: 335 LLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
           +   M+  G +PDI TYN +   L +G +  +A  LF EM
Sbjct: 488 IYKRMIEAGIYPDISTYNAVLSALARGGRWVQAEKLFAEM 527



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 80/331 (24%), Positives = 130/331 (39%), Gaps = 56/331 (16%)

Query: 104 WNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVME 162
           WN ++ + G+N L   +    K MKK   +    T+ S+ SSY        A+  +  M 
Sbjct: 434 WNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDQAMEIYKRMI 493

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDVA 221
           + G   D+   N++LSA+ R G+ + A + F  + D   KPD  +Y+ LL  +      A
Sbjct: 494 EAGIYPDISTYNAVLSALARGGRWVQAEKLFAEMEDRDCKPDELSYSSLLHAY------A 547

Query: 222 NAK-----KTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPG 276
           NAK     K   E +     +P N       L+ +    + + ET  + + +  R C+  
Sbjct: 548 NAKKLDKMKALSEDIYAQRIEPHNWLV--KTLVLVNNKVNSLSETEKAFQELRRRRCSLD 605

Query: 277 MTFFKL------------AFEECLT---GQNLRGAEFIWGA---MVGRI----------- 307
           +                   EE LT     ++  +   + +   M  R+           
Sbjct: 606 INVLNAMVSIYGKNKMVKKVEEVLTLMKENSINHSAATYNSLMHMYSRLGDCEKCEAILT 665

Query: 308 -----GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGR 362
                G RPD + YN +I  Y    +   A +L  EM  +G  PDI TYNI         
Sbjct: 666 EIKSSGMRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGVKPDIVTYNIFI------- 718

Query: 363 KLWEASGLFNEMVKNENVLNHENCRAAVRVY 393
           K + A+ +F E +     L  + C+   R Y
Sbjct: 719 KSYVANLMFEEAIDLVRYLVAQGCKPNERTY 749



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 78/319 (24%), Positives = 131/319 (41%), Gaps = 7/319 (2%)

Query: 152 KDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAIL 210
           K+ +   D M++ G + D +  N+L+S   R G   +A Q F  +     +PD  T+  L
Sbjct: 238 KEVVVLVDSMKEDGIELDRYTYNTLISCCRRRGLYREAAQMFDEMKAAGFEPDKVTFNSL 297

Query: 211 LEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMME 270
           L+ + K R    A     +M    G  P +V  Y+S +   +K  DG+ E    LK+ ME
Sbjct: 298 LDVYGKARRHEEAIGVLKKME-NAGCTP-SVVTYNSLISAYVK--DGLLEEALELKQEME 353

Query: 271 -RGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNET 329
            RG  P +  +            +  A   +  MV R G  P+   YN +I ++    + 
Sbjct: 354 FRGMKPDVVTYTTLISGLDRIGKIDAALATYSEMV-RNGCSPNLCTYNALIKMHGVRGKF 412

Query: 330 GAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAA 389
              M + D++   G  PD+ T+N L     +     E SG+F EM K   +   +   + 
Sbjct: 413 TEMMIVFDDLRSAGYVPDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSL 472

Query: 390 VRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
           +  Y        A++ +K MIE        T N +++ L       +A K    M ++  
Sbjct: 473 ISSYSRCGLFDQAMEIYKRMIEAGIYPDISTYNAVLSALARGGRWVQAEKLFAEMEDRDC 532

Query: 450 QVTPFALSKLKQILIKARK 468
           +    + S L      A+K
Sbjct: 533 KPDELSYSSLLHAYANAKK 551



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 61/216 (28%), Positives = 91/216 (42%), Gaps = 16/216 (7%)

Query: 169 DVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTF 227
           D  A  +L+S   R G+  DA   F R+VDG ++P   TY ++L  + K          +
Sbjct: 184 DASAYTALVSEFSRAGRFRDAVAVFRRMVDGGVQPALVTYNVVLHVYSK------MSVPW 237

Query: 228 GEMVIEVGWDPDNVPAYDSYLITLLKGC---DGIY-ETVNSLKRMMERGCNPGMTFFKLA 283
            E+V+ V    ++    D Y    L  C    G+Y E       M   G  P    F   
Sbjct: 238 KEVVVLVDSMKEDGIELDRYTYNTLISCCRRRGLYREAAQMFDEMKAAGFEPDKVTFNSL 297

Query: 284 FEECLTGQNLRGAEFIWGAM--VGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVY 341
            +  + G+  R  E I G +  +   G  P    YN +IS Y        A++L  EM +
Sbjct: 298 LD--VYGKARRHEEAI-GVLKKMENAGCTPSVVTYNSLISAYVKDGLLEEALELKQEMEF 354

Query: 342 NGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKN 377
            G  PD+ TY  L   L +  K+  A   ++EMV+N
Sbjct: 355 RGMKPDVVTYTTLISGLDRIGKIDAALATYSEMVRN 390


>gi|242074540|ref|XP_002447206.1| hypothetical protein SORBIDRAFT_06g030430 [Sorghum bicolor]
 gi|241938389|gb|EES11534.1| hypothetical protein SORBIDRAFT_06g030430 [Sorghum bicolor]
          Length = 446

 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 93/385 (24%), Positives = 154/385 (40%), Gaps = 32/385 (8%)

Query: 84  AVKFFRWSAYQLNDKHSPYAWNLV--VDLLGKNCLFDAMWDAIKSMK--KENVLSLATFA 139
           A+ FF WSA        P A  L   VD+LGK+  F      + S    ++         
Sbjct: 56  ALDFFHWSASPTGANLPPTAATLARAVDILGKHFEFPLATSLLLSHHDPEDPAFLRPALR 115

Query: 140 SVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR 199
           ++ +    A+ V DA+  FD         D  + + L+ A+C D + +D    L    G+
Sbjct: 116 ALLNRLAAANLVDDALRAFDSTAASIGLRDEASFHLLVDALC-DHRRVDEADHL--CFGK 172

Query: 200 ----IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
                 P   T+ +LL GW K R  A  ++ + +M  +      ++ +Y  Y+  L K  
Sbjct: 173 DPPPFPPGTKTHNLLLRGWAKTRAWARLRQLWFDM--DRRGVAKDLHSYSIYMDALAKSG 230

Query: 256 DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHM 315
              ++T    K M ++G       +  A       Q +  A  ++  MV   G +P+T  
Sbjct: 231 KP-WKTFKVFKEMKQKGVRIDTVAYNTAIHAVGLAQGVDSAVRLYRQMVD-AGCKPNTAT 288

Query: 316 YNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
           YN ++ L+C           + +M   G  PD+ TY+  F+FL + +   E  GLF +M+
Sbjct: 289 YNGIVKLFCKEGRFKEGYAFVQQMHKTGCKPDVLTYHCFFQFLSRPQ---EVLGLFEKML 345

Query: 376 KNENVLNHENCRAAVRVYMDSDDPYVAIKF-------WKYMIENHCSDLSETGNLLVAGL 428
           +         C+  +  Y+     +    F       WK M E   S  +   N L+  L
Sbjct: 346 E-------RGCQPRMDTYVMLIKRFGRWGFLRPVFIVWKAMEEQGLSPDAFAYNALIDAL 398

Query: 429 CDMHMLPEAVKYAKGMAEKGIQVTP 453
               M+  A KY + M  KG+   P
Sbjct: 399 LQKGMVDLARKYDEEMLAKGLSPKP 423


>gi|224144668|ref|XP_002325369.1| predicted protein [Populus trichocarpa]
 gi|222862244|gb|EEE99750.1| predicted protein [Populus trichocarpa]
          Length = 422

 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 85/344 (24%), Positives = 151/344 (43%), Gaps = 18/344 (5%)

Query: 39  IKTLCEIIANTPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDK 98
           I  +  II     P  E  L+K  + ++ E V +VL+   + P  +++FF W+    +  
Sbjct: 14  IHNITNIIRKEVYP--ERTLNKLNLPITSELVFRVLRACSNSPSESLRFFNWARSYYSPT 71

Query: 99  HSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENV-----LSLATFASVFSSYVVADRVKD 153
              Y   L++ L+ +N  + +MW  I  +K +N+     +S  T  S+   Y     +  
Sbjct: 72  TIEYE-ELIITLV-RNKKYASMWKLIAQVK-DNLGDKFSVSSDTVCSIIEEYGKHGLIDQ 128

Query: 154 AITTFD-VMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYAILL 211
           A+  F+       C+H+V   NSLL A+C       A+  +R ++   I PD  TY +L+
Sbjct: 129 AVEVFNKCSRSLNCQHNVCVYNSLLFALCEVKMFHGAYALVRRMIRKGIVPDKRTYGVLV 188

Query: 212 EGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSL-KRMME 270
            GW     +  AK    EM  + G++P  V   D  +  LL    G  E+   + +RMM+
Sbjct: 189 NGWCSSGKLREAKGFLEEMS-KKGFNPP-VRGRDLLIEGLLNA--GYLESAKDMVRRMMK 244

Query: 271 RGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETG 330
            G  P +  F    E       +     ++ + V ++GF PD + Y ++I          
Sbjct: 245 EGLVPDVNTFNSMVEAICNAGEVDFCVDMYHS-VCKLGFCPDINSYKILIPAVSKVGRID 303

Query: 331 AAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
            A +LL  ++ +G  P    Y  + + + +  +  +A   F+EM
Sbjct: 304 EAFRLLHNLIEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEM 347


>gi|302773712|ref|XP_002970273.1| hypothetical protein SELMODRAFT_411148 [Selaginella moellendorffii]
 gi|300161789|gb|EFJ28403.1| hypothetical protein SELMODRAFT_411148 [Selaginella moellendorffii]
          Length = 831

 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 101/434 (23%), Positives = 175/434 (40%), Gaps = 84/434 (19%)

Query: 104 WNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVME 162
           +++++ LL ++   D   +A   +   N+  S  T  SV      A RV  A++  + M 
Sbjct: 342 YDMLIRLLIESGRIDKAEEACLEIAGRNIQPSSGTCHSVIQELCKAGRVDSALSLLETMI 401

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIK--------------------- 201
           + G   D+   + L++ +C+  K  +A +FL+ +D +I                      
Sbjct: 402 KRGYCPDMATHSMLINELCKADKIQEAQEFLQGMDRKISSRSSSCFSYNSLLNSLCKAKK 461

Query: 202 ------------------PDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPA 243
                             PD  +Y+IL++G+ K  ++  A+K + +M I++   P NV  
Sbjct: 462 VHQAFAIFSTMVSERSFVPDVVSYSILIDGFCKIDELGRAEKLYKQM-IDLNCVP-NVTT 519

Query: 244 YDSYLITLLKG-----CDGIYETVN------------------SLKR-----------MM 269
           Y+++L  L++        G+YE +                   SL R           M+
Sbjct: 520 YNAFLNGLMRKGRIADAQGVYEEMVAAGCSPDVITYSTLIHGFSLARKHDQAHELFETMI 579

Query: 270 ERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNET 329
            RGC P    +               A  ++  MV R G  PD   Y  ++  +C   + 
Sbjct: 580 SRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVER-GCDPDRVTYTTLLYGFCNVGKI 638

Query: 330 GAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNE---NVLNHENC 386
             A+++ DEMV  G  PD+  YN L +   +  K  EA  LF  MV  +   + ++H   
Sbjct: 639 EQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEAKQLFQVMVSRQCKPDTVSHNIM 698

Query: 387 RAAVRVYMDSDDPYVAIKFWKYMIENH-CSDLSETGNLLVAGLCDMHMLPEAVKYAKGMA 445
              +      DD   A++ ++ M ++H CS    T N L+ GLC    L EA+K  K + 
Sbjct: 699 IDGLSKAKRLDD---AVEVFERMEQDHGCSPDLVTYNSLIFGLCGEQRLSEAMKVFKEID 755

Query: 446 EKGIQVTPFALSKL 459
              +   P A + L
Sbjct: 756 RLKLSPDPHAFNVL 769



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 62/227 (27%), Positives = 98/227 (43%), Gaps = 6/227 (2%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-V 195
           T++++   + +A +   A   F+ M   GC+ +    N LL  +C++ K  +A +  R +
Sbjct: 554 TYSTLIHGFSLARKHDQAHELFETMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKM 613

Query: 196 VDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLK-G 254
           V+    PD  TY  LL G+     +  A + F EMV + G DPD V AY+  L    + G
Sbjct: 614 VERGCDPDRVTYTTLLYGFCNVGKIEQAVEVFDEMVSK-GHDPD-VVAYNCLLKGFFRAG 671

Query: 255 CDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTH 314
             G  E     + M+ R C P      +  +     + L  A  ++  M    G  PD  
Sbjct: 672 KPG--EAKQLFQVMVSRQCKPDTVSHNIMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLV 729

Query: 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKG 361
            YN +I   C       AMK+  E+      PD   +N+L E +  G
Sbjct: 730 TYNSLIFGLCGEQRLSEAMKVFKEIDRLKLSPDPHAFNVLLEAIKCG 776



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 76/332 (22%), Positives = 133/332 (40%), Gaps = 42/332 (12%)

Query: 153 DAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILL 211
           +A+T F  ++    KHDVF  N LL  + R      A Q F ++V   + P+  TYA+L+
Sbjct: 112 EALTFFRWLQARNFKHDVFTYNCLLDKLIRHRDLKQAGQVFEKMVAQGVVPNGFTYAVLV 171

Query: 212 EGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMER 271
           +    ER+   A + FGEMV + G+ P +             G +G +  V    R +E+
Sbjct: 172 QSSCYERNSDEAVRFFGEMV-DKGFKPSSTLYQKVTECLKATGKEGEFSRV--FGRDLEK 228

Query: 272 GCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGA 331
                M   K      +       A  ++ AMV + G +PD  +Y+ M+  +C       
Sbjct: 229 RVAVEMMLKKALLVNFVIQDKAIEASKLFRAMV-KSGCKPDATIYSYMVLAHCKLENLDE 287

Query: 332 AMKLLDEMVYNG------------------------AFPDIQT-----------YNILFE 356
           A KL  EM                            AF   +T           Y++L  
Sbjct: 288 AFKLFLEMAVESKAPLNNVAWTAFLSGLCKSGKIEQAFEACRTMQESLSSSQPVYDMLIR 347

Query: 357 FLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIE-NHCS 415
            L++  ++ +A     E+       +   C + ++    +     A+   + MI+  +C 
Sbjct: 348 LLIESGRIDKAEEACLEIAGRNIQPSSGTCHSVIQELCKAGRVDSALSLLETMIKRGYCP 407

Query: 416 DLSETGNLLVAGLCDMHMLPEAVKYAKGMAEK 447
           D++ T ++L+  LC    + EA ++ +GM  K
Sbjct: 408 DMA-THSMLINELCKADKIQEAQEFLQGMDRK 438



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 79/345 (22%), Positives = 132/345 (38%), Gaps = 43/345 (12%)

Query: 67  QETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKS 126
           +ETV  V+K      G A+ FFRW   + N KH  + +N ++D L ++          + 
Sbjct: 97  RETVGAVIK-HLRDGGEALTFFRWLQAR-NFKHDVFTYNCLLDKLIRHRDLKQAGQVFEK 154

Query: 127 MKKENVLSLA-TFASVFSSYVVADRVKDAITTFDVMEQYGCK------------------ 167
           M  + V+    T+A +  S        +A+  F  M   G K                  
Sbjct: 155 MVAQGVVPNGFTYAVLVQSSCYERNSDEAVRFFGEMVDKGFKPSSTLYQKVTECLKATGK 214

Query: 168 ----HDVFALN-------------SLLSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYAI 209
                 VF  +             +LL       K I+A +  R +V    KPD   Y+ 
Sbjct: 215 EGEFSRVFGRDLEKRVAVEMMLKKALLVNFVIQDKAIEASKLFRAMVKSGCKPDATIYSY 274

Query: 210 LLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMM 269
           ++    K  ++  A K F EM +E     +NV A+ ++L  L K   G  E      R M
Sbjct: 275 MVLAHCKLENLDEAFKLFLEMAVESKAPLNNV-AWTAFLSGLCK--SGKIEQAFEACRTM 331

Query: 270 ERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNET 329
           +   +     + +     +    +  AE     + GR   +P +   + +I   C +   
Sbjct: 332 QESLSSSQPVYDMLIRLLIESGRIDKAEEACLEIAGR-NIQPSSGTCHSVIQELCKAGRV 390

Query: 330 GAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
            +A+ LL+ M+  G  PD+ T+++L   L K  K+ EA      M
Sbjct: 391 DSALSLLETMIKRGYCPDMATHSMLINELCKADKIQEAQEFLQGM 435


>gi|224145829|ref|XP_002325779.1| predicted protein [Populus trichocarpa]
 gi|222862654|gb|EEF00161.1| predicted protein [Populus trichocarpa]
          Length = 586

 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 84/323 (26%), Positives = 141/323 (43%), Gaps = 11/323 (3%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           ++ TF ++ +    A     A+  FD M   GC+ DV+   ++++ +C+ G+T  A   +
Sbjct: 160 TIITFTTLINGLCKAGEFAQALELFDDMVARGCQPDVYTYTTIINGLCKMGETAAAAGLI 219

Query: 194 RVVDGRI--KPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITL 251
           + + G +  +PD  TY+ L++   K+R V  A   F  M  + G  P  V +Y S LI  
Sbjct: 220 KKM-GEVGCQPDVVTYSTLIDSLCKDRLVNEALDIFSYMKAK-GISP-TVVSYTS-LIQG 275

Query: 252 LKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRP 311
           L       E    L  M      P +  F L  +      N+  A+ +   M   +G  P
Sbjct: 276 LCSFSRWKEASAMLNEMTSLNIMPDIVTFSLLIDIFCKEGNVLEAQGVLKTMT-EMGVEP 334

Query: 312 DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLF 371
           +   YN ++  Y    E   A KL D M+  G  PD+ +Y+IL       +++ EA  LF
Sbjct: 335 NVITYNSLMHGYSLQMEVVEARKLFDVMITRGCKPDVFSYSILINGYCMVKRIDEAKQLF 394

Query: 372 NEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIEN-HCSDLSETGNLLVAGLCD 430
           NEM+      N  +    +  +        A + +K M  N +  DL  T ++L+ G C 
Sbjct: 395 NEMIHQGLTPNTVSYTTLIHAFCQLGKLREARELFKDMHTNGYLPDLC-TYSVLLEGFCK 453

Query: 431 MHMLPEAVKYAKGMAEKGIQVTP 453
              L +A +  + M  +G  + P
Sbjct: 454 QGYLGKAFRLFRAM--QGTYLKP 474



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 73/291 (25%), Positives = 122/291 (41%), Gaps = 12/291 (4%)

Query: 124 IKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICR 182
           +  M   N++  + TF+ +   +     V +A      M + G + +V   NSL+     
Sbjct: 289 LNEMTSLNIMPDIVTFSLLIDIFCKEGNVLEAQGVLKTMTEMGVEPNVITYNSLMHGYSL 348

Query: 183 DGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNV 241
             + ++A +   V+  R  KPD  +Y+IL+ G+   + +  AK+ F EM I  G  P+ V
Sbjct: 349 QMEVVEARKLFDVMITRGCKPDVFSYSILINGYCMVKRIDEAKQLFNEM-IHQGLTPNTV 407

Query: 242 PAYDSYLITLLKGCD--GIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEF- 298
               SY   +   C    + E     K M   G  P +  + +  E     Q   G  F 
Sbjct: 408 ----SYTTLIHAFCQLGKLREARELFKDMHTNGYLPDLCTYSVLLEG-FCKQGYLGKAFR 462

Query: 299 IWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFL 358
           ++ AM G    +P+  MY ++I   C S     A KL  E+  +G  PD+Q Y  +   L
Sbjct: 463 LFRAMQGTY-LKPNLVMYTILIDSMCKSGNLNHARKLFSELFVHGLQPDVQIYTTIINGL 521

Query: 359 VKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYM 409
            K   L EA   F +M ++    N  +    +R ++   D   A++    M
Sbjct: 522 CKEGLLDEALEAFRKMEEDGCPPNEFSYNVIIRGFLQHKDESRAVQLIGEM 572



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 58/111 (52%), Gaps = 3/111 (2%)

Query: 265 LKRMMERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLY 323
           L ++++ G  P + TF  L    C  G+  +  E ++  MV R G +PD + Y  +I+  
Sbjct: 149 LAKVIKLGLQPTIITFTTLINGLCKAGEFAQALE-LFDDMVAR-GCQPDVYTYTTIINGL 206

Query: 324 CYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
           C   ET AA  L+ +M   G  PD+ TY+ L + L K R + EA  +F+ M
Sbjct: 207 CKMGETAAAAGLIKKMGEVGCQPDVVTYSTLIDSLCKDRLVNEALDIFSYM 257



 Score = 46.2 bits (108), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 64/163 (39%), Gaps = 14/163 (8%)

Query: 308 GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEA 367
           G  P+T   N++I+ +C          +L +++  G  P I T+  L   L K  +  +A
Sbjct: 121 GLSPNTCTLNILINCFCLMQHVDLGFSVLAKVIKLGLQPTIITFTTLINGLCKAGEFAQA 180

Query: 368 SGLFNEMVKNENVLNHENCRAAVRVYM-------DSDDPYVAIKFWKYMIENHCSDLSET 420
             LF++MV          C+  V  Y           +   A    K M E  C     T
Sbjct: 181 LELFDDMVA-------RGCQPDVYTYTTIINGLCKMGETAAAAGLIKKMGEVGCQPDVVT 233

Query: 421 GNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQIL 463
            + L+  LC   ++ EA+     M  KGI  T  + + L Q L
Sbjct: 234 YSTLIDSLCKDRLVNEALDIFSYMKAKGISPTVVSYTSLIQGL 276


>gi|302786208|ref|XP_002974875.1| hypothetical protein SELMODRAFT_150113 [Selaginella moellendorffii]
 gi|300157770|gb|EFJ24395.1| hypothetical protein SELMODRAFT_150113 [Selaginella moellendorffii]
          Length = 382

 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 76/318 (23%), Positives = 141/318 (44%), Gaps = 9/318 (2%)

Query: 84  AVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVF 142
           A   FR        + + + +N +VD L K    DA    I   +K +    + T+ ++ 
Sbjct: 65  AFDLFRKMVAAGGCRPNAFTYNALVDGLCKQDRLDAARAVIAEARKRDFAPDVVTYNTLM 124

Query: 143 SSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIK 201
           ++     RV +A+ TF  M + G    + + N++++ +CR  +  DA + F  ++D    
Sbjct: 125 AALFQLGRVDEALATFTQMTEEGYVPTLVSFNAIITGLCRARRLADALEVFNEMIDRDFH 184

Query: 202 PDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYET 261
           P+  TY+++++G  K   +  A++    MV E G  PD V AY + L+        +   
Sbjct: 185 PNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSE-GCRPDLV-AY-TPLVLGFSAAGRLDSA 241

Query: 262 VNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMIS 321
           +  L+RM+ +GC P +  + +  ++      +  A  I+  +V      P+   Y+ +I 
Sbjct: 242 LGLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVDDAHEIFRELVAN-KCSPNVVTYSALIG 300

Query: 322 LYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVL 381
            YC ++      K++ EM      P++ TYN +   L    +  EA G+F EM +   V 
Sbjct: 301 GYCRASRVDEGGKVMREMACR---PNVVTYNTMIWGLSMVDRNEEAYGMFREMSECGFVP 357

Query: 382 NHENCRAAVRVYMDSDDP 399
           +    R   R     D P
Sbjct: 358 DARTYRGLKRALRMIDHP 375



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 81/328 (24%), Positives = 143/328 (43%), Gaps = 33/328 (10%)

Query: 135 LATFASVFSSYVVADRVKDAITTFDVM-EQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           + ++ ++ +      RV  A   F  M    GC+ + F  N+L+  +C+  + +DA + +
Sbjct: 46  VVSYTTLINGLCKLGRVDAAFDLFRKMVAAGGCRPNAFTYNALVDGLCKQDR-LDAARAV 104

Query: 194 RVVDGRIK---PDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSY--L 248
            + + R +   PD  TY  L+    +   V  A  TF +M  E G+    VP   S+  +
Sbjct: 105 -IAEARKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQMT-EEGY----VPTLVSFNAI 158

Query: 249 ITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIG 308
           IT L     + + +     M++R  +P +  + +  +       L  A+ +   MV   G
Sbjct: 159 ITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSE-G 217

Query: 309 FRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEAS 368
            RPD   Y  ++  +  +    +A+ LL  MV  G  PD+ TY ++ + L K  ++ +A 
Sbjct: 218 CRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVDDAH 277

Query: 369 GLFNEMVKNE---NVLNHEN-----CRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSET 420
            +F E+V N+   NV+ +       CRA+ RV           +  K M E  C     T
Sbjct: 278 EIFRELVANKCSPNVVTYSALIGGYCRAS-RVD----------EGGKVMREMACRPNVVT 326

Query: 421 GNLLVAGLCDMHMLPEAVKYAKGMAEKG 448
            N ++ GL  +    EA    + M+E G
Sbjct: 327 YNTMIWGLSMVDRNEEAYGMFREMSECG 354



 Score = 46.2 bits (108), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 67/164 (40%), Gaps = 5/164 (3%)

Query: 299 IWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFL 358
           ++  MV   G RP+   YN ++   C  +   AA  ++ E       PD+ TYN L   L
Sbjct: 68  LFRKMVAAGGCRPNAFTYNALVDGLCKQDRLDAARAVIAEARKRDFAPDVVTYNTLMAAL 127

Query: 359 VKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLS 418
            +  ++ EA   F +M +   V    +  A +     +     A++ +  MI+       
Sbjct: 128 FQLGRVDEALATFTQMTEEGYVPTLVSFNAIITGLCRARRLADALEVFNEMIDRDFHPNL 187

Query: 419 ETGNLLVAGLCDMHMLPEAVKYAKGMAEKG-----IQVTPFALS 457
            T ++++ GLC    L EA +    M  +G     +  TP  L 
Sbjct: 188 VTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLG 231


>gi|449502431|ref|XP_004161638.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Cucumis sativus]
          Length = 646

 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 85/385 (22%), Positives = 168/385 (43%), Gaps = 11/385 (2%)

Query: 81  PGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWD----AIKSMKKENVLSLA 136
           PG AV FF   A  L+ K +  ++N V++++ +   F   +        +  K    +L 
Sbjct: 116 PGEAVNFFHRMANDLHCKQTVKSFNSVLNVIIQEGDFSYAFKFYLHVFGANSKGFQPNLL 175

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           T+  +  +     ++  A+ TF  M    C  DVF  ++L++ +C++ +  +A   L  +
Sbjct: 176 TYNLIIKALCKLGQIDRAVDTFREMPLKNCNPDVFTYSTLMNGLCKERRVDEAVFLLDEM 235

Query: 197 DGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITL-LKG 254
                 P+  T+ +L++   K  D++ A K    M ++ G  P+ V  Y++ +  L LKG
Sbjct: 236 QAEGCLPNPVTFNVLIDALSKNGDLSRAAKLVDNMFLK-GCVPNEV-TYNTLIHGLCLKG 293

Query: 255 CDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTH 314
              + + ++ L++M+   C P    +       +  +       I  +M  R G + + +
Sbjct: 294 --KLDKALSLLEKMVSSKCVPNQVTYGTIINGLVKQRRAEDGVHILMSMEER-GQKANEY 350

Query: 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
           +Y+ +IS      ++  A++L  EM   G  P++  Y    + L +  K  EA  +  EM
Sbjct: 351 IYSSLISGLFKEGKSENAVRLWKEMAEKGCKPNVVVYGAFIDGLCRDEKPDEAEDILQEM 410

Query: 375 VKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHML 434
           +    + N     + ++ +    D   AI  WK M+           ++L+ GLC+   L
Sbjct: 411 LSKGFLPNAFTYSSLMKGFFKKGDSQKAILVWKEMMSQDMRHNVVCCSVLLNGLCESGRL 470

Query: 435 PEAVKYAKGMAEKGIQVTPFALSKL 459
            EA+     M  +G++    A S +
Sbjct: 471 REALTVWTHMLGEGLKPDVVAYSSM 495



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 88/355 (24%), Positives = 141/355 (39%), Gaps = 10/355 (2%)

Query: 117 FDAMWDAIKSMKKEN-VLSLATFASVFSSYVVADRVKDAITTFDVMEQ-YGCKHDVFALN 174
           F  +   +  MK+E  VL+   F  +F +   A    +A+  F  M     CK  V + N
Sbjct: 81  FHFIHQVLDRMKREGRVLTETIFILIFKACGKAHLPGEAVNFFHRMANDLHCKQTVKSFN 140

Query: 175 SLLSAICRDGKTIDAWQFLRVVDGR----IKPDNDTYAILLEGWEKERDVANAKKTFGEM 230
           S+L+ I ++G    A++F   V G      +P+  TY ++++   K   +  A  TF EM
Sbjct: 141 SVLNVIIQEGDFSYAFKFYLHVFGANSKGFQPNLLTYNLIIKALCKLGQIDRAVDTFREM 200

Query: 231 VIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTG 290
            ++   +PD V  Y + +  L K    + E V  L  M   GC P    F +  +     
Sbjct: 201 PLK-NCNPD-VFTYSTLMNGLCKE-RRVDEAVFLLDEMQAEGCLPNPVTFNVLIDALSKN 257

Query: 291 QNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQT 350
            +L  A  +   M  + G  P+   YN +I   C   +   A+ LL++MV +   P+  T
Sbjct: 258 GDLSRAAKLVDNMFLK-GCVPNEVTYNTLIHGLCLKGKLDKALSLLEKMVSSKCVPNQVT 316

Query: 351 YNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMI 410
           Y  +   LVK R+  +   +   M +     N     + +           A++ WK M 
Sbjct: 317 YGTIINGLVKQRRAEDGVHILMSMEERGQKANEYIYSSLISGLFKEGKSENAVRLWKEMA 376

Query: 411 ENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIK 465
           E  C          + GLC      EA    + M  KG     F  S L +   K
Sbjct: 377 EKGCKPNVVVYGAFIDGLCRDEKPDEAEDILQEMLSKGFLPNAFTYSSLMKGFFK 431



 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 62/243 (25%), Positives = 106/243 (43%), Gaps = 7/243 (2%)

Query: 136 ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR- 194
            T+ ++ +  V   R +D +     ME+ G K + +  +SL+S + ++GK+ +A +  + 
Sbjct: 315 VTYGTIINGLVKQRRAEDGVHILMSMEERGQKANEYIYSSLISGLFKEGKSENAVRLWKE 374

Query: 195 VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG 254
           + +   KP+   Y   ++G  ++     A+    EM+ + G+ P N   Y S +    K 
Sbjct: 375 MAEKGCKPNVVVYGAFIDGLCRDEKPDEAEDILQEMLSK-GFLP-NAFTYSSLMKGFFKK 432

Query: 255 CDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTH 314
            D   + +   K MM +     +    +          LR A  +W  M+G  G +PD  
Sbjct: 433 GDS-QKAILVWKEMMSQDMRHNVVCCSVLLNGLCESGRLREALTVWTHMLGE-GLKPDVV 490

Query: 315 MYNMMISLYCYSNETGAAMKLLDEMVYN--GAFPDIQTYNILFEFLVKGRKLWEASGLFN 372
            Y+ MI   C        +KL  EM      + PD+ TYNILF  L +   L  A  L N
Sbjct: 491 AYSSMIKGLCDVGSVDKGLKLFYEMQCQEPKSRPDVVTYNILFNALCRQDNLTRAIDLLN 550

Query: 373 EMV 375
            M+
Sbjct: 551 SML 553



 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 53/223 (23%), Positives = 97/223 (43%), Gaps = 5/223 (2%)

Query: 138 FASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VV 196
           ++S+ S      + ++A+  +  M + GCK +V    + +  +CRD K  +A   L+ ++
Sbjct: 352 YSSLISGLFKEGKSENAVRLWKEMAEKGCKPNVVVYGAFIDGLCRDEKPDEAEDILQEML 411

Query: 197 DGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD 256
                P+  TY+ L++G+ K+ D   A   + EM+ +   D  +     S L+  L    
Sbjct: 412 SKGFLPNAFTYSSLMKGFFKKGDSQKAILVWKEMMSQ---DMRHNVVCCSVLLNGLCESG 468

Query: 257 GIYETVNSLKRMMERGCNPGMTFFKLAFEE-CLTGQNLRGAEFIWGAMVGRIGFRPDTHM 315
            + E +     M+  G  P +  +    +  C  G   +G +  +         RPD   
Sbjct: 469 RLREALTVWTHMLGEGLKPDVVAYSSMIKGLCDVGSVDKGLKLFYEMQCQEPKSRPDVVT 528

Query: 316 YNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFL 358
           YN++ +  C  +    A+ LL+ M+  G  PD  T NI  E L
Sbjct: 529 YNILFNALCRQDNLTRAIDLLNSMLDEGCDPDSLTCNIFLETL 571



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 62/161 (38%)

Query: 308 GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEA 367
           GF+P+   YN++I   C   +   A+    EM      PD+ TY+ L   L K R++ EA
Sbjct: 169 GFQPNLLTYNLIIKALCKLGQIDRAVDTFREMPLKNCNPDVFTYSTLMNGLCKERRVDEA 228

Query: 368 SGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAG 427
             L +EM     + N       +     + D   A K    M    C     T N L+ G
Sbjct: 229 VFLLDEMQAEGCLPNPVTFNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTLIHG 288

Query: 428 LCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARK 468
           LC    L +A+   + M              +   L+K R+
Sbjct: 289 LCLKGKLDKALSLLEKMVSSKCVPNQVTYGTIINGLVKQRR 329


>gi|115482712|ref|NP_001064949.1| Os10g0495200 [Oryza sativa Japonica Group]
 gi|78708847|gb|ABB47822.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113639558|dbj|BAF26863.1| Os10g0495200 [Oryza sativa Japonica Group]
          Length = 782

 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 99/410 (24%), Positives = 167/410 (40%), Gaps = 24/410 (5%)

Query: 81  PGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCL-------FDAMWDAIKSMKKENVL 133
           P  AV  +   A     K +P      + L+G  C        F A+ + +K   + + +
Sbjct: 70  PAAAVSRYNRMARAGAGKVTPTVHTYAI-LIGCCCRAGRLDLGFAALGNVVKKGFRVDAI 128

Query: 134 SLATFASVFSSYVVADRVKDAI-TTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQF 192
              TF  +        R  DA+      M + GC  DVF+ N+LL  +C + ++ +A + 
Sbjct: 129 ---TFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALEL 185

Query: 193 LRVV----DGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYL 248
           L ++     G   PD  +Y  +L G+ KE D   A  T+ EM ++ G  PD V  Y S +
Sbjct: 186 LHMMADDRGGGSPPDVVSYNTVLNGFFKEGDSDKAYSTYHEM-LDRGILPD-VVTYSSII 243

Query: 249 ITLLKGCDGIYETVNSLKRMMERGCNPG-MTFFKLAFEECLTGQNLRGAEFIWGAMVGRI 307
             L K    + + +  L  M++ G  P  MT+  +    C +GQ     E I      R 
Sbjct: 244 AALCKA-QAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQP---KEAIGTLKKMRS 299

Query: 308 -GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWE 366
            G  P+   Y+ +++  C +  +  A K+ D M   G  PDI TY  L +       L E
Sbjct: 300 DGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVE 359

Query: 367 ASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVA 426
              L + MV+N    +H      +  Y   +    A+  +  M ++  +        ++ 
Sbjct: 360 MHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVID 419

Query: 427 GLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELL 476
            LC    + +A+ Y + M ++G+       + L   L    K    EEL+
Sbjct: 420 VLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELI 469



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 97/443 (21%), Positives = 175/443 (39%), Gaps = 88/443 (19%)

Query: 104 WNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVME 162
           ++ ++  L K    D   + + +M K  V+    T+ S+   Y  + + K+AI T   M 
Sbjct: 239 YSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMR 298

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR----------------------- 199
             G + +V   +SL++ +C++G++ +A +    +  R                       
Sbjct: 299 SDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALV 358

Query: 200 -------------IKPDNDTYAILLEGWEKERDVANAKKTFGEM---------------- 230
                        I+PD+  + IL+  + K+  V  A   F +M                
Sbjct: 359 EMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVI 418

Query: 231 ------------------VIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERG 272
                             +I+ G  P N+  Y S LI  L  CD   +    +  M++RG
Sbjct: 419 DVLCKSGSVDDAMLYFEQMIDEGLTP-NIIVYTS-LIHGLCTCDKWDKAEELILEMLDRG 476

Query: 273 CNPGMTFFKLAFEE-CLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGA 331
                 FF    +  C  G+ +  +E ++  MV RIG +PD   YN +I   C + +   
Sbjct: 477 ICLNTIFFNSIIDSHCKEGRVIE-SEKLFDLMV-RIGVKPDIITYNTLIDGCCLAGKMDE 534

Query: 332 AMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK---NENVLNHENCRA 388
           A KLL  MV  G  PDI TY  L     +  ++ +A  LF EMV    + N++ +     
Sbjct: 535 ATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQ 594

Query: 389 AV---RVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMA 445
            +   R    + + YV+I      +E        T N+++ GLC  ++  EA++  + + 
Sbjct: 595 GLFHTRRTAAAKELYVSITKSGTQLE------LSTYNIILHGLCKNNLTDEALRMFQNLC 648

Query: 446 EKGIQVTPFALSKLKQILIKARK 468
              +Q+     + +   L+K  +
Sbjct: 649 LTDLQLETRTFNIMIGALLKCGR 671



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 71/295 (24%), Positives = 121/295 (41%), Gaps = 17/295 (5%)

Query: 138 FASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVV 196
           F S+  S+    RV ++   FD+M + G K D+   N+L+   C  GK  +A + L  +V
Sbjct: 484 FNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMV 543

Query: 197 DGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD 256
              +KPD  TY  L+ G+ +   + +A   F EMV   G  P N+  Y+  L        
Sbjct: 544 SVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMV-SSGVSP-NIITYNIIL-------Q 594

Query: 257 GIYETVNSLK------RMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFR 310
           G++ T  +         + + G    ++ + +     L   NL          +     +
Sbjct: 595 GLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHG-LCKNNLTDEALRMFQNLCLTDLQ 653

Query: 311 PDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGL 370
            +T  +N+MI           A  L      NG  PD++TY+++ E L++   L E   L
Sbjct: 654 LETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLVPDVRTYSLMAENLIEQGSLEELDDL 713

Query: 371 FNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLV 425
           F  M +N    +     + VR  +   D   A  +   + E H S  + T + L+
Sbjct: 714 FLSMEENGCSADSRMLNSIVRKLLQRGDITRAGTYLFMIDEKHFSLEASTASFLL 768



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 74/308 (24%), Positives = 127/308 (41%), Gaps = 15/308 (4%)

Query: 152 KDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVD---GRIKPDNDTYA 208
           +DA   FD + + G    ++ LN  L+ + R        ++ R+     G++ P   TYA
Sbjct: 37  EDARHVFDELLRRGRGASIYGLNRALADVARHSPAAAVSRYNRMARAGAGKVTPTVHTYA 96

Query: 209 ILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNS---- 264
           IL+    +   +       G  V++ G+  D +         LLKG      T ++    
Sbjct: 97  ILIGCCCRAGRLDLGFAALGN-VVKKGFRVDAIT-----FTPLLKGLCADKRTSDAMDIV 150

Query: 265 LKRMMERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRP-DTHMYNMMISL 322
           L+RM E GC P + ++  L    C   ++    E +      R G  P D   YN +++ 
Sbjct: 151 LRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNG 210

Query: 323 YCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLN 382
           +    ++  A     EM+  G  PD+ TY+ +   L K + + +A  + N MVKN  + +
Sbjct: 211 FFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPD 270

Query: 383 HENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAK 442
                + +  Y  S  P  AI   K M  +       T + L+  LC      EA K   
Sbjct: 271 CMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFD 330

Query: 443 GMAEKGIQ 450
            M ++G++
Sbjct: 331 SMTKRGLE 338


>gi|224056220|ref|XP_002298762.1| predicted protein [Populus trichocarpa]
 gi|222846020|gb|EEE83567.1| predicted protein [Populus trichocarpa]
          Length = 643

 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 78/278 (28%), Positives = 122/278 (43%), Gaps = 12/278 (4%)

Query: 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKEN-VLSLATFASVFSSYVVADRVKDAITTFDV 160
           Y +N ++    +  L +      K MK    V    T+ ++   Y  + R K+A+     
Sbjct: 105 YTYNTLITCCRRGSLHEEAAAVFKDMKSMGFVPDKVTYNALLDVYGKSRRTKEAMEVLRE 164

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERD 219
           ME  GC   +   NSL+SA  RDG   +A +   ++V+G I  D  TY  LL G+ +   
Sbjct: 165 MEVNGCSPSIVTYNSLISAYARDGLLKEAMELKNQMVEGGINLDVFTYTTLLSGFVRAGK 224

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTF 279
             +A + F EM    G  P N+  +++ LI +        E +   + +    C P +  
Sbjct: 225 DESAMRVFAEMR-AAGCKP-NICTFNA-LIKMHGNRGKFAEMMKVFEEIKNSCCVPDIVT 281

Query: 280 FKLAFEECLTGQNLRGAEFIWGAM--VGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLD 337
           +       + GQN   +E + G    + R GF P+   YN +IS Y        AM +  
Sbjct: 282 WNTLL--AVFGQNGMDSE-VSGVFKEMKRAGFVPERDTYNTLISAYSRCGSFDQAMDIYK 338

Query: 338 EMVYNGAFPDIQTYNILFEFLVKGRKLWEAS-GLFNEM 374
            M+  G  PD+ TYN +   L +G  LWE S  +F EM
Sbjct: 339 RMLEAGITPDLSTYNAVLAALARG-GLWEQSEKIFAEM 375



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 84/369 (22%), Positives = 153/369 (41%), Gaps = 16/369 (4%)

Query: 104 WNLVVDLLGKNCLFDAMWDAIKSMKKEN-VLSLATFASVFSSYVVADRVKDAITTFDVME 162
           WN ++ + G+N +   +    K MK+   V    T+ ++ S+Y        A+  +  M 
Sbjct: 282 WNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTYNTLISAYSRCGSFDQAMDIYKRML 341

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQ-----FLRVVDGRIKPDNDTYAILLEGWEKE 217
           + G   D+   N++L+A+ R G     W+     F  + DGR KP+  TY  LL  +   
Sbjct: 342 EAGITPDLSTYNAVLAALARGG----LWEQSEKIFAEMKDGRCKPNELTYCSLLHAYANG 397

Query: 218 RDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGM 277
           +++        E +     +P  V      L+ +   CD + E   +   +  +G +P +
Sbjct: 398 KEIGRML-ALAEEICSGVIEPHAVLL--KTLVLVNSKCDLLVEAEVAFLELKRKGFSPDL 454

Query: 278 TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLD 337
           +            Q       I   M    GF P    YN ++ ++  S     + ++L 
Sbjct: 455 STLNAMLSIYGRRQMFTKTNEILNFM-NESGFTPSLATYNSLMYMHSRSENFERSEEVLK 513

Query: 338 EMVYNGAFPDIQTYN-ILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDS 396
           E++  G  PD  +YN ++F +   GR + EAS +F+EM ++  V +       V  Y   
Sbjct: 514 EILAKGIKPDTISYNTVIFAYCRNGR-MKEASRIFSEMRESGLVPDVITYNTFVASYAAD 572

Query: 397 DDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFAL 456
                AI   +YMI++ C     T N +V G C  +   +A+ +   + E    ++    
Sbjct: 573 SMFEDAIDVVRYMIKHGCKPNQNTYNSVVDGYCKHNHRDDAIMFISSLHELDPHISREEK 632

Query: 457 SKLKQILIK 465
            +L + L K
Sbjct: 633 CRLSERLTK 641



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 76/362 (20%), Positives = 137/362 (37%), Gaps = 44/362 (12%)

Query: 106 LVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASVFSSYVVADRVKDAITTFDVMEQY 164
           +++ +LGK          +  + K+   L +  + S+ ++ V   R ++A+  F  ME+ 
Sbjct: 3   VIISMLGKEGKVSVAASLLNDLHKDGFGLDVYAYTSLITACVSNGRYREAVMVFKKMEEE 62

Query: 165 GCKHDVFALNSLLS-----------------------------------AICRDGKTID- 188
           GCK  +   N +L+                                     CR G   + 
Sbjct: 63  GCKPTLITYNVILNVYGKMGMPWNKIKGLFEGMKNAGVLPDEYTYNTLITCCRRGSLHEE 122

Query: 189 -AWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSY 247
            A  F  +      PD  TY  LL+ + K R    A +   EM  EV     ++  Y+S 
Sbjct: 123 AAAVFKDMKSMGFVPDKVTYNALLDVYGKSRRTKEAMEVLREM--EVNGCSPSIVTYNSL 180

Query: 248 LITLLKGCDGIYETVNSLK-RMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGR 306
           +    +  DG+ +    LK +M+E G N  +  +       +       A  ++  M   
Sbjct: 181 ISAYAR--DGLLKEAMELKNQMVEGGINLDVFTYTTLLSGFVRAGKDESAMRVFAEMRA- 237

Query: 307 IGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWE 366
            G +P+   +N +I ++    +    MK+ +E+  +   PDI T+N L     +     E
Sbjct: 238 AGCKPNICTFNALIKMHGNRGKFAEMMKVFEEIKNSCCVPDIVTWNTLLAVFGQNGMDSE 297

Query: 367 ASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVA 426
            SG+F EM +   V   +     +  Y        A+  +K M+E   +    T N ++A
Sbjct: 298 VSGVFKEMKRAGFVPERDTYNTLISAYSRCGSFDQAMDIYKRMLEAGITPDLSTYNAVLA 357

Query: 427 GL 428
            L
Sbjct: 358 AL 359



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 80/184 (43%), Gaps = 2/184 (1%)

Query: 287 CLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYN-GAF 345
           C++    R A  ++  M    G +P    YN+++++Y         +K L E + N G  
Sbjct: 43  CVSNGRYREAVMVFKKMEEE-GCKPTLITYNVILNVYGKMGMPWNKIKGLFEGMKNAGVL 101

Query: 346 PDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKF 405
           PD  TYN L     +G    EA+ +F +M     V +     A + VY  S     A++ 
Sbjct: 102 PDEYTYNTLITCCRRGSLHEEAAAVFKDMKSMGFVPDKVTYNALLDVYGKSRRTKEAMEV 161

Query: 406 WKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIK 465
            + M  N CS    T N L++      +L EA++    M E GI +  F  + L    ++
Sbjct: 162 LREMEVNGCSPSIVTYNSLISAYARDGLLKEAMELKNQMVEGGINLDVFTYTTLLSGFVR 221

Query: 466 ARKE 469
           A K+
Sbjct: 222 AGKD 225


>gi|242038895|ref|XP_002466842.1| hypothetical protein SORBIDRAFT_01g015050 [Sorghum bicolor]
 gi|241920696|gb|EER93840.1| hypothetical protein SORBIDRAFT_01g015050 [Sorghum bicolor]
          Length = 1090

 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 81/306 (26%), Positives = 127/306 (41%), Gaps = 15/306 (4%)

Query: 77  SYSHPGPAVKFFRWSAYQLNDKHSPYAW---NLVVDLLGKNCLFDAMWDAIKSMKKENVL 133
           SY H G  V+ F      +   HSP      NL+  L     L  A       +   + +
Sbjct: 513 SYCHRGKIVEAFSVYDDMVRYGHSPNVCTYQNLLRGLCQGGHLVQAKQFMFCLLDIPSAV 572

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
              TF ++         + +A+   + M +  C  D+     LLS  CR GK + A   L
Sbjct: 573 DEKTFNALLLGICKYGTLDEALDICEKMVKNNCLPDIHTYTILLSGFCRKGKILPALVML 632

Query: 194 RV-VDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
           ++ ++  + PD   Y  LL G   E  V  A   F E++ + G   D + AY+S +   L
Sbjct: 633 QMMLEKGVVPDTVAYTCLLNGLINEGQVKAASYVFQEIICKEGLYADCI-AYNSLMNGYL 691

Query: 253 KGCDGIYETVNSLKRMM----ERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIG 308
           KG +     VN++KRMM    +    P    + +     +       + +++  MV R G
Sbjct: 692 KGGN-----VNTIKRMMSDMYQNEVYPNSASYNILMHGYVKRGQFSKSLYLYKYMV-RKG 745

Query: 309 FRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEAS 368
            RPD   Y ++I           A+K L++MV  G FPD   ++IL     +  K+  A 
Sbjct: 746 IRPDNVTYRLLILGLSECGLIDIAVKFLEKMVLEGIFPDKLVFDILITSFSEKSKMHNAL 805

Query: 369 GLFNEM 374
            LFN M
Sbjct: 806 RLFNCM 811



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 64/279 (22%), Positives = 123/279 (44%), Gaps = 15/279 (5%)

Query: 105 NLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQY 164
           N++++ L  N  F    D ++ MK   + + AT+ ++   YV   R K A+   + ME+ 
Sbjct: 159 NILLNSLCTNGEFRKAEDMLQKMKSCCLSNSATYNTILHWYVKKGRFKAALCVLEDMERD 218

Query: 165 GCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERDVANA 223
             + D++  N ++  +CR  ++  A+  L R+    + PD  TY  L+ G+  E  + +A
Sbjct: 219 SIQADIYTYNIMIDKLCRIKRSARAFLLLKRMRKDDLTPDECTYNTLINGFFGEGKINHA 278

Query: 224 KKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDG--IYETVNSLKRMMERGCNPGMTFFK 281
           +  F  M+ +       VP+  +Y   +   C    I + ++ L  M   G  P     +
Sbjct: 279 RCVFNHMLRQT-----LVPSVATYTTMIDGYCRNRRIDKALSVLSEMEITGVMPS----E 329

Query: 282 LAFEECLTGQ---NLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDE 338
           L +   L G    ++ G        +   G   +  M  ++I  +C   E   A ++L  
Sbjct: 330 LTYSALLNGYCKVSMLGPALDLMVDLKSRGITINKTMCTILIDGFCQVGEISKAKQILKS 389

Query: 339 MVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKN 377
           M+ +G  PD+ TY+ L   + +  K+ E   + + M K+
Sbjct: 390 MLEDGIDPDVVTYSALINGMCRMAKMHETKEILSRMQKS 428



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 68/317 (21%), Positives = 128/317 (40%), Gaps = 43/317 (13%)

Query: 136 ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR- 194
            +F  +  SY    ++ +A + +D M +YG   +V    +LL  +C+ G  + A QF+  
Sbjct: 505 VSFNCIIDSYCHRGKIVEAFSVYDDMVRYGHSPNVCTYQNLLRGLCQGGHLVQAKQFMFC 564

Query: 195 VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG 254
           ++D     D  T+  LL G  K   +  A     +MV       + +P   +Y I L   
Sbjct: 565 LLDIPSAVDEKTFNALLLGICKYGTLDEALDICEKMV-----KNNCLPDIHTYTILLSGF 619

Query: 255 C--DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD 312
           C    I   +  L+ M+E+G  P    +       +    ++ A +++  ++ + G   D
Sbjct: 620 CRKGKILPALVMLQMMLEKGVVPDTVAYTCLLNGLINEGQVKAASYVFQEIICKEGLYAD 679

Query: 313 THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFN 372
              YN +++ Y          +++ +M  N  +P+  +YNIL    VK        G F+
Sbjct: 680 CIAYNSLMNGYLKGGNVNTIKRMMSDMYQNEVYPNSASYNILMHGYVK-------RGQFS 732

Query: 373 EMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMH 432
           +                            ++  +KYM+       + T  LL+ GL +  
Sbjct: 733 K----------------------------SLYLYKYMVRKGIRPDNVTYRLLILGLSECG 764

Query: 433 MLPEAVKYAKGMAEKGI 449
           ++  AVK+ + M  +GI
Sbjct: 765 LIDIAVKFLEKMVLEGI 781



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 78/347 (22%), Positives = 124/347 (35%), Gaps = 35/347 (10%)

Query: 136 ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRV 195
             F  +  +YV   +V DA      M+  G K    A NS+L A+  +G++   W FLR 
Sbjct: 86  VVFELLIKAYVKERKVLDAAVAVFFMDDCGFKASPVACNSILKALVEEGESKYVWLFLRE 145

Query: 196 VDGRIKP-DNDTYAILLEG------WEKERDVANAKKTF--------------------- 227
              R  P D  T  ILL        + K  D+    K+                      
Sbjct: 146 SLARKFPLDVTTCNILLNSLCTNGEFRKAEDMLQKMKSCCLSNSATYNTILHWYVKKGRF 205

Query: 228 -GEMVIEVGWDPDNVPA-YDSYLITLLKGCDGIYETVNS---LKRMMERGCNPGMTFFKL 282
              + +    + D++ A   +Y I + K C  I  +  +   LKRM +    P    +  
Sbjct: 206 KAALCVLEDMERDSIQADIYTYNIMIDKLCR-IKRSARAFLLLKRMRKDDLTPDECTYNT 264

Query: 283 AFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYN 342
                     +  A  ++  M+ R    P    Y  MI  YC +     A+ +L EM   
Sbjct: 265 LINGFFGEGKINHARCVFNHML-RQTLVPSVATYTTMIDGYCRNRRIDKALSVLSEMEIT 323

Query: 343 GAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVA 402
           G  P   TY+ L     K   L  A  L  ++      +N   C   +  +    +   A
Sbjct: 324 GVMPSELTYSALLNGYCKVSMLGPALDLMVDLKSRGITINKTMCTILIDGFCQVGEISKA 383

Query: 403 IKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
            +  K M+E+       T + L+ G+C M  + E  +    M + GI
Sbjct: 384 KQILKSMLEDGIDPDVVTYSALINGMCRMAKMHETKEILSRMQKSGI 430



 Score = 47.4 bits (111), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 55/107 (51%), Gaps = 3/107 (2%)

Query: 139 ASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVD- 197
           +S+        ++++A+  F  M + G    V    +L+ ++C++ K  DA    R+++ 
Sbjct: 894 SSIIRGLCRCGKLEEAVIVFSNMMRSGMVPTVATFTTLMHSLCKESKIADALHLKRLMEL 953

Query: 198 GRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAY 244
            R+K D  +Y +L+ G  K++ +++A   +GEM  +  W   NV  Y
Sbjct: 954 CRLKVDVVSYNVLITGLCKDKHISDALDLYGEMKSKGLW--PNVTTY 998


>gi|15217608|ref|NP_171708.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806399|sp|O81908.2|PPR2_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g02060, chloroplastic; Flags: Precursor
 gi|332189251|gb|AEE27372.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 710

 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 89/373 (23%), Positives = 152/373 (40%), Gaps = 49/373 (13%)

Query: 65  VSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAI 124
           +S+ TV Q L+     P   ++FF W + +    H   ++ L+++ LG+    +   + +
Sbjct: 66  ISRTTVLQTLRL-IKVPADGLRFFDWVSNK-GFSHKEQSFFLMLEFLGRARNLNVARNFL 123

Query: 125 KSMKKEN----VLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAI 180
            S+++ +     L    F S+  SY  A   ++++  F  M+Q G    V   NSLLS +
Sbjct: 124 FSIERRSNGCVKLQDRYFNSLIRSYGNAGLFQESVKLFQTMKQMGISPSVLTFNSLLSIL 183

Query: 181 CRDGKT---IDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWD 237
            + G+T    D +  +R   G + PD+ T+  L+ G+ K   V  A + F +M +    +
Sbjct: 184 LKRGRTGMAHDLFDEMRRTYG-VTPDSYTFNTLINGFCKNSMVDEAFRIFKDMEL-YHCN 241

Query: 238 PDNV---------------------------------PAYDSYLITLLKG-C--DGIYET 261
           PD V                                 P   SY  TL++G C    I E 
Sbjct: 242 PDVVTYNTIIDGLCRAGKVKIAHNVLSGMLKKATDVHPNVVSY-TTLVRGYCMKQEIDEA 300

Query: 262 VNSLKRMMERGCNPGMTFFKLAFEECLTGQNL-RGAEFIWGAMVGRIGFRPDTHMYNMMI 320
           V     M+ RG  P    +    +            + + G       F PD   +N++I
Sbjct: 301 VLVFHDMLSRGLKPNAVTYNTLIKGLSEAHRYDEIKDILIGGNDAFTTFAPDACTFNILI 360

Query: 321 SLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENV 380
             +C +    AAMK+  EM+     PD  +Y++L   L    +   A  LFNE+ + E +
Sbjct: 361 KAHCDAGHLDAAMKVFQEMLNMKLHPDSASYSVLIRTLCMRNEFDRAETLFNELFEKEVL 420

Query: 381 LNHENCRAAVRVY 393
           L  + C+     Y
Sbjct: 421 LGKDECKPLAAAY 433



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 76/324 (23%), Positives = 138/324 (42%), Gaps = 36/324 (11%)

Query: 77  SYSHPG---PAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL 133
           SY + G    +VK F+ +  Q+    S   +N ++ +L K        D    M++   +
Sbjct: 147 SYGNAGLFQESVKLFQ-TMKQMGISPSVLTFNSLLSILLKRGRTGMAHDLFDEMRRTYGV 205

Query: 134 S--LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ 191
           +    TF ++ + +     V +A   F  ME Y C  DV   N+++  +CR GK   A  
Sbjct: 206 TPDSYTFNTLINGFCKNSMVDEAFRIFKDMELYHCNPDVVTYNTIIDGLCRAGKVKIAHN 265

Query: 192 FLRVVDGRIKPDND------TYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYD 245
              V+ G +K   D      +Y  L+ G+  ++++  A   F +M +  G  P+ V  Y+
Sbjct: 266 ---VLSGMLKKATDVHPNVVSYTTLVRGYCMKQEIDEAVLVFHDM-LSRGLKPNAV-TYN 320

Query: 246 SYLITLLKGCDGIYETVNSLKRMMERGCNPGMTF------FKLAFEECLTGQNLRGAEFI 299
               TL+KG    +   + +K ++  G +   TF      F +  +      +L  A  +
Sbjct: 321 ----TLIKGLSEAHR-YDEIKDILIGGNDAFTTFAPDACTFNILIKAHCDAGHLDAAMKV 375

Query: 300 WGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAF-------PDIQTYN 352
           +  M+  +   PD+  Y+++I   C  NE   A  L +E+             P    YN
Sbjct: 376 FQEMLN-MKLHPDSASYSVLIRTLCMRNEFDRAETLFNELFEKEVLLGKDECKPLAAAYN 434

Query: 353 ILFEFLVKGRKLWEASGLFNEMVK 376
            +FE+L    K  +A  +F +++K
Sbjct: 435 PMFEYLCANGKTKQAEKVFRQLMK 458



 Score = 44.7 bits (104), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 61/293 (20%), Positives = 113/293 (38%), Gaps = 31/293 (10%)

Query: 109 DLLGKNCLFDAMWDAIKSMKKENVLS------------LATFASVFSSYVVADRVKDAIT 156
           D++  N + D +  A K     NVLS            + ++ ++   Y +   + +A+ 
Sbjct: 243 DVVTYNTIIDGLCRAGKVKIAHNVLSGMLKKATDVHPNVVSYTTLVRGYCMKQEIDEAVL 302

Query: 157 TFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-----IKPDNDTYAILL 211
            F  M   G K +    N+L+  +    +  +    L  + G        PD  T+ IL+
Sbjct: 303 VFHDMLSRGLKPNAVTYNTLIKGLSEAHRYDEIKDIL--IGGNDAFTTFAPDACTFNILI 360

Query: 212 EGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMER 271
           +       +  A K F EM + +   PD+  A  S LI  L   +           + E+
Sbjct: 361 KAHCDAGHLDAAMKVFQEM-LNMKLHPDS--ASYSVLIRTLCMRNEFDRAETLFNELFEK 417

Query: 272 G-------CNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYC 324
                   C P    +   FE        + AE ++  ++ R    P +  Y  +I+ +C
Sbjct: 418 EVLLGKDECKPLAAAYNPMFEYLCANGKTKQAEKVFRQLMKRGVQDPPS--YKTLITGHC 475

Query: 325 YSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKN 377
              +   A +LL  M+     PD++TY +L + L+K  +   A      M+++
Sbjct: 476 REGKFKPAYELLVLMLRREFVPDLETYELLIDGLLKIGEALLAHDTLQRMLRS 528



 Score = 43.1 bits (100), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 54/239 (22%), Positives = 96/239 (40%), Gaps = 41/239 (17%)

Query: 241 VPAYDSYLITLLK--GCDGIY-ETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAE 297
           V   D Y  +L++  G  G++ E+V   + M + G +P +  F       L       A 
Sbjct: 134 VKLQDRYFNSLIRSYGNAGLFQESVKLFQTMKQMGISPSVLTFNSLLSILLKRGRTGMAH 193

Query: 298 FIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEF 357
            ++  M    G  PD++ +N +I+ +C ++    A ++  +M      PD+ TYN + + 
Sbjct: 194 DLFDEMRRTYGVTPDSYTFNTLINGFCKNSMVDEAFRIFKDMELYHCNPDVVTYNTIIDG 253

Query: 358 LVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDL 417
           L +  K+  A  + + M+K                                  + H + +
Sbjct: 254 LCRAGKVKIAHNVLSGMLKKAT-------------------------------DVHPNVV 282

Query: 418 SETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEA-VYEEL 475
           S T   LV G C    + EAV     M  +G++  P A++     LIK   EA  Y+E+
Sbjct: 283 SYTT--LVRGYCMKQEIDEAVLVFHDMLSRGLK--PNAVT--YNTLIKGLSEAHRYDEI 335


>gi|357140802|ref|XP_003571952.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g55630-like [Brachypodium distachyon]
          Length = 501

 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 84/330 (25%), Positives = 139/330 (42%), Gaps = 25/330 (7%)

Query: 45  IIANTPSPTVEDVLDKTLIRVSQETVEQVLKF---------SYSHPGPAVKFFRWSAYQL 95
           ++ + P  +    LD+  +RVS E V +VL               P  A KFF W+  Q 
Sbjct: 111 LLQDGPGFSARQALDEMNLRVSNELVREVLSRIVVSVDSVNRERFPRLAYKFFLWAGQQE 170

Query: 96  NDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLA--TFASVFSSYVVADRVKD 153
              HS   +NLV+ +  +     AMW  ++ M  EN LS++  TF  +  +   A   + 
Sbjct: 171 GYHHSTGMYNLVMKVFAQCGEVKAMWRLLEEMT-ENGLSISARTFHLLICTCGQAGLRRR 229

Query: 154 AITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRI-----KPDNDTYA 208
            +  F     +  +    + N++L  +     TI+ +  +  V  ++      PD  TY 
Sbjct: 230 LVERFIKSSSFNYRPFRNSFNAILHTLL----TIEQYSLIEWVHQKMLMEGHSPDVLTYN 285

Query: 209 ILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRM 268
           I++        +    +   EM  + G  PD +  Y+  L  L KG D     +N L  M
Sbjct: 286 IVMRAKYMLGKLDQFHRLLDEMG-KNGLTPD-LHTYNILLHVLGKG-DKPLAALNLLNYM 342

Query: 269 MERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNE 328
            + GC P +  F    +      NL   ++ +  M+ + G  PD   Y +MI+ Y  + E
Sbjct: 343 SDVGCVPSVLHFTNLIDGLSRAGNLEACKYFFDEMMKK-GCEPDVVCYTVMITGYVAAAE 401

Query: 329 TGAAMKLLDEMVYNGAFPDIQTYNILFEFL 358
              A KL D+M+  G  P++ TYN +   L
Sbjct: 402 LEEAQKLFDDMLVRGKLPNVYTYNTMIRGL 431



 Score = 46.2 bits (108), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 33/67 (49%)

Query: 308 GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEA 367
           G  PD   YN+++       +     +LLDEM  NG  PD+ TYNIL   L KG K   A
Sbjct: 276 GHSPDVLTYNIVMRAKYMLGKLDQFHRLLDEMGKNGLTPDLHTYNILLHVLGKGDKPLAA 335

Query: 368 SGLFNEM 374
             L N M
Sbjct: 336 LNLLNYM 342



 Score = 41.6 bits (96), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 72/181 (39%), Gaps = 14/181 (7%)

Query: 304 VGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRK 363
           +G+ G  PD H YN+++ +    ++  AA+ LL+ M   G  P +  +  L + L +   
Sbjct: 307 MGKNGLTPDLHTYNILLHVLGKGDKPLAALNLLNYMSDVGCVPSVLHFTNLIDGLSRAGN 366

Query: 364 LWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAI-------KFWKYMIENHCSD 416
           L      F+EM+K       + C   V  Y      YVA        K +  M+      
Sbjct: 367 LEACKYFFDEMMK-------KGCEPDVVCYTVMITGYVAAAELEEAQKLFDDMLVRGKLP 419

Query: 417 LSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELL 476
              T N ++ GLC +    +A    K M  +G        S L   L  A K+A    ++
Sbjct: 420 NVYTYNTMIRGLCIVGEFDKACSMLKDMDLRGCTPNFSVYSTLVCRLRNAGKDAEANNVI 479

Query: 477 K 477
           K
Sbjct: 480 K 480


>gi|15237384|ref|NP_197167.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171647|sp|Q9FMD3.1|PP389_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g16640, mitochondrial; Flags: Precursor
 gi|10176973|dbj|BAB10191.1| unnamed protein product [Arabidopsis thaliana]
 gi|110737318|dbj|BAF00605.1| hypothetical protein [Arabidopsis thaliana]
 gi|332004938|gb|AED92321.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 504

 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 89/369 (24%), Positives = 155/369 (42%), Gaps = 19/369 (5%)

Query: 117 FDAMWDAIKSMKKENVL--------------SLATFASVFSSYVVADRVKDAITTFDVME 162
           F  +  AI  MKK +V+              +L T   + + +    ++  A++    M 
Sbjct: 84  FSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNILLNCFCRCSQLSLALSFLGKMI 143

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDA-WQFLRVVDGRIKPDNDTYAILLEGWEKERDVA 221
           + G +  +    SLL+  CR  +  DA + F ++V    KP+   Y  +++G  K + V 
Sbjct: 144 KLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMGYKPNVVIYNTIIDGLCKSKQVD 203

Query: 222 NAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFK 281
           NA      M  + G  PD V  Y+S LI+ L       +    +  M +R   P +  F 
Sbjct: 204 NALDLLNRMEKD-GIGPD-VVTYNS-LISGLCSSGRWSDATRMVSCMTKREIYPDVFTFN 260

Query: 282 LAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVY 341
              + C+    +  AE  +  M+ R    PD   Y+++I   C  +    A ++   MV 
Sbjct: 261 ALIDACVKEGRVSEAEEFYEEMIRR-SLDPDIVTYSLLIYGLCMYSRLDEAEEMFGFMVS 319

Query: 342 NGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYV 401
            G FPD+ TY+IL     K +K+     LF EM +   V N       ++ Y  +    V
Sbjct: 320 KGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAGKLNV 379

Query: 402 AIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQ 461
           A + ++ M+         T N+L+ GLCD   + +A+     M + G+       + + +
Sbjct: 380 AEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKIEKALVILADMQKNGMDADIVTYNIIIR 439

Query: 462 ILIKARKEA 470
            + KA + A
Sbjct: 440 GMCKAGEVA 448



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 69/266 (25%), Positives = 120/266 (45%), Gaps = 6/266 (2%)

Query: 104 WNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVME 162
           +N ++D L K+   D   D +  M+K+ +   + T+ S+ S    + R  DA      M 
Sbjct: 189 YNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMT 248

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYAILLEGWEKERDVA 221
           +     DVF  N+L+ A  ++G+  +A +F   ++   + PD  TY++L+ G      + 
Sbjct: 249 KREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYSRLD 308

Query: 222 NAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFK 281
            A++ FG MV + G  PD V    S LI        +   +     M +RG       + 
Sbjct: 309 EAEEMFGFMVSK-GCFPDVVTY--SILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYT 365

Query: 282 LAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVY 341
           +  +       L  AE I+  MV   G  P+   YN+++   C + +   A+ +L +M  
Sbjct: 366 ILIQGYCRAGKLNVAEEIFRRMV-FCGVHPNIITYNVLLHGLCDNGKIEKALVILADMQK 424

Query: 342 NGAFPDIQTYNILFEFLVKGRKLWEA 367
           NG   DI TYNI+   + K  ++ +A
Sbjct: 425 NGMDADIVTYNIIIRGMCKAGEVADA 450



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 81/356 (22%), Positives = 149/356 (41%), Gaps = 49/356 (13%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           S+A F+ + S+     +    I  ++ M+  G  H++   N LL+  CR  +   A  FL
Sbjct: 80  SIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNILLNCFCRCSQLSLALSFL 139

Query: 194 -RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
            +++    +P   T+  LL G+ +   V +A   F +MV  +G+ P NV  Y++ +  L 
Sbjct: 140 GKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMV-GMGYKP-NVVIYNTIIDGLC 197

Query: 253 KGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD 312
           K    +   ++ L RM + G                                  IG  PD
Sbjct: 198 KS-KQVDNALDLLNRMEKDG----------------------------------IG--PD 220

Query: 313 THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFN 372
              YN +IS  C S     A +++  M     +PD+ T+N L +  VK  ++ EA   + 
Sbjct: 221 VVTYNSLISGLCSSGRWSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYE 280

Query: 373 EMVKNE---NVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLC 429
           EM++     +++ +      + +Y   D+   A + + +M+   C     T ++L+ G C
Sbjct: 281 EMIRRSLDPDIVTYSLLIYGLCMYSRLDE---AEEMFGFMVSKGCFPDVVTYSILINGYC 337

Query: 430 DMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKK---CKAH 482
               +   +K    M+++G+       + L Q   +A K  V EE+ ++   C  H
Sbjct: 338 KSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVH 393


>gi|255541126|ref|XP_002511627.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548807|gb|EEF50296.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1163

 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 86/369 (23%), Positives = 157/369 (42%), Gaps = 46/369 (12%)

Query: 67  QETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKS 126
           + TV +VL+   + P  A++FF W A +L   H+  ++ L++++LG+    +   + + S
Sbjct: 86  KTTVFEVLRLIKT-PSKALQFFNW-APELGFTHNDQSYFLMLEILGRARNLNVARNFLFS 143

Query: 127 MKKENVLSLAT----FASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICR 182
           +K+ +  ++      F S+  SY  A   ++++  F+ M+  G    V   NSLL  + +
Sbjct: 144 IKRRSNGTVKLEDRFFNSLIRSYGKAGLFQESVQVFNSMKSVGVSPSVVTFNSLLLILLK 203

Query: 183 DGKTIDAWQFL--RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDN 240
            G+T  A       +    + PD  T+ IL+ G+ K   V    + F EM      DPD 
Sbjct: 204 RGRTNMAQSVFDEMLSTYGVTPDTYTFNILIRGFCKNSMVDEGFRFFKEMS-RFKCDPDL 262

Query: 241 V---------------------------------PAYDSYLITLLKG-C--DGIYETVNS 264
           V                                 P   +Y  TL++G C    I E +  
Sbjct: 263 VTYNTLVDGLCRAGKVNIAHNVVNGMVKKSTNLNPDVVTY-TTLVRGYCMKHEIDEALVV 321

Query: 265 LKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYC 324
            + M+ +G  P    +    +     Q +   + I+   +G  GF PDT   N +++ +C
Sbjct: 322 FEEMVSKGLKPNEITYNTLIKGLCEVQKIDKIKQIFEGALGGGGFIPDTCTLNTLMNAHC 381

Query: 325 YSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHE 384
            +     A+++ ++M+     PD  TY++L   L +      A  LF+E+ + E +L  +
Sbjct: 382 NAGNLNDALEVFEKMMVLNVRPDSATYSVLIRNLCQRGNFERAEQLFDELSEKEILLRDD 441

Query: 385 NCRAAVRVY 393
            C   V  Y
Sbjct: 442 GCTPLVAAY 450



 Score = 45.8 bits (107), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 63/274 (22%), Positives = 114/274 (41%), Gaps = 20/274 (7%)

Query: 110 LLGKNCLFDAMWDAIKSMKKENVLSL----ATFASVFSSYVVADRVKDAITTFDVMEQY- 164
           L+  +C    + DA++  +K  VL++    AT++ +  +       + A   FD + +  
Sbjct: 376 LMNAHCNAGNLNDALEVFEKMMVLNVRPDSATYSVLIRNLCQRGNFERAEQLFDELSEKE 435

Query: 165 ------GCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKER 218
                 GC   V A  S+   +CR+GKT  A +  R +  R   D  ++ IL++G  +E 
Sbjct: 436 ILLRDDGCTPLVAAYKSMFEFLCRNGKTAKAERVFRQLMKRGTQDPLSFKILIKGHCRE- 494

Query: 219 DVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMT 278
               A      +++   + PD +  Y S +  LL+  + +     +L++M++    P  +
Sbjct: 495 GTFEAGYELLVLMLRRDFVPD-LETYQSLIDGLLQKGEPLV-AYQTLEKMIKSSHVPETS 552

Query: 279 FFKLAFEECLT-GQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLD 337
            F       L  G     A FI   + G+I  R + ++    + L   S     A K++ 
Sbjct: 553 TFHSILARLLAKGCAHESARFIMLMLEGKI--RQNINLSTHTVRLLFGSGLRDKAFKIVG 610

Query: 338 EMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLF 371
            +  NG   D++    L  FL   RK   A  L 
Sbjct: 611 LLYANGYVVDMEE---LIGFLSHNRKFLLAHKLL 641



 Score = 40.0 bits (92), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 33/143 (23%), Positives = 58/143 (40%), Gaps = 1/143 (0%)

Query: 312 DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLF 371
           +   +N +I  Y  +     ++++ + M   G  P + T+N L   L+K  +   A  +F
Sbjct: 155 EDRFFNSLIRSYGKAGLFQESVQVFNSMKSVGVSPSVVTFNSLLLILLKRGRTNMAQSVF 214

Query: 372 NEMVKNENVL-NHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCD 430
           +EM+    V  +       +R +  +       +F+K M    C     T N LV GLC 
Sbjct: 215 DEMLSTYGVTPDTYTFNILIRGFCKNSMVDEGFRFFKEMSRFKCDPDLVTYNTLVDGLCR 274

Query: 431 MHMLPEAVKYAKGMAEKGIQVTP 453
              +  A     GM +K   + P
Sbjct: 275 AGKVNIAHNVVNGMVKKSTNLNP 297


>gi|356512664|ref|XP_003525037.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74750-like [Glycine max]
          Length = 873

 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 78/327 (23%), Positives = 144/327 (44%), Gaps = 9/327 (2%)

Query: 52  PTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLL 111
           PT E  L      +      Q+LK     P  A+ FF W   Q   +H  + +  +V +L
Sbjct: 329 PTAEKALYNLNFSMDAYQANQILK-QLQDPSVALGFFDWLRRQPGFRHDGHTYTTMVGIL 387

Query: 112 GKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDV 170
           G+   FD++   ++ M K+    ++ T+  +   Y  A+ +K+A+  F+ M++ GC+ D 
Sbjct: 388 GRARRFDSISKLLEQMVKDGCQPNVVTYNRLIHCYGCANYLKEALNVFNEMQEVGCEPDR 447

Query: 171 FALNSLLSAICRDGKT-IDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGE 229
               +L+    + G   +    + R+ +  + PD  TY++++    K  ++A A   F E
Sbjct: 448 VTYCTLIDIHAKAGFIDVAMSMYKRMQEAGLSPDTFTYSVIINCLGKAGNLAAAHWLFCE 507

Query: 230 MVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMER-GCNPGMTFFKLAFEECL 288
           MV E G  P N+  Y+  ++  L+     YE    L   M+  G  P    + +  E   
Sbjct: 508 MV-EHGCVP-NLVTYN--IMIALQAKARNYEMALKLYHDMQNAGFQPDKVTYSIVMEALG 563

Query: 289 TGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDI 348
               L  AE ++  M  +  + PD  +Y +++ L+  +     A +    M+  G  P++
Sbjct: 564 HCGYLEEAESVFVEMQQK-NWVPDEPVYGLLVDLWGKAGNVEKASEWYQAMLNAGLLPNV 622

Query: 349 QTYNILFEFLVKGRKLWEASGLFNEMV 375
            T N L    ++  +L +A  L   MV
Sbjct: 623 PTCNSLLSAFLRLHRLPDAYNLVQSMV 649



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 80/300 (26%), Positives = 131/300 (43%), Gaps = 8/300 (2%)

Query: 154 AITTFD-VMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILL 211
           A+  FD +  Q G +HD     +++  + R  +     + L ++V    +P+  TY  L+
Sbjct: 360 ALGFFDWLRRQPGFRHDGHTYTTMVGILGRARRFDSISKLLEQMVKDGCQPNVVTYNRLI 419

Query: 212 EGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMER 271
             +     +  A   F EM  EVG +PD V      LI +      I   ++  KRM E 
Sbjct: 420 HCYGCANYLKEALNVFNEMQ-EVGCEPDRVTY--CTLIDIHAKAGFIDVAMSMYKRMQEA 476

Query: 272 GCNPGMTFFKLAFEECL-TGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETG 330
           G +P  TF       CL    NL  A +++  MV   G  P+   YN+MI+L   +    
Sbjct: 477 GLSPD-TFTYSVIINCLGKAGNLAAAHWLFCEMVEH-GCVPNLVTYNIMIALQAKARNYE 534

Query: 331 AAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAV 390
            A+KL  +M   G  PD  TY+I+ E L     L EA  +F EM +   V +       V
Sbjct: 535 MALKLYHDMQNAGFQPDKVTYSIVMEALGHCGYLEEAESVFVEMQQKNWVPDEPVYGLLV 594

Query: 391 RVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQ 450
            ++  + +   A ++++ M+         T N L++    +H LP+A    + M   G++
Sbjct: 595 DLWGKAGNVEKASEWYQAMLNAGLLPNVPTCNSLLSAFLRLHRLPDAYNLVQSMVALGLR 654


>gi|302780485|ref|XP_002972017.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
 gi|300160316|gb|EFJ26934.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
          Length = 1116

 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 105/455 (23%), Positives = 185/455 (40%), Gaps = 35/455 (7%)

Query: 20  KRKRSTFASHLDVPNLPPTIKTLCEIIANTPSPTVEDVLDKTLIRVSQETVEQVLKFSYS 79
           +R  +   S +D    P  I     + A   +  V++ L+      S+     V+ F+  
Sbjct: 412 ERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSI 471

Query: 80  HPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLA--- 136
             G         A+Q+ D  +     LV D +    L D ++   ++ + E +L      
Sbjct: 472 IDGLCKSDRSGEAFQMFDDMA-LKHGLVPDKITYCTLIDGLFRTGRAGQAEALLDAMPDP 530

Query: 137 ---TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-F 192
               F    +       V  A+  ++ M +     D    N L++  C+ G    A   F
Sbjct: 531 DTYAFNCCINGLSKLGDVSRALQVYNRMLELELVPDKVTFNILIAGACKAGNFEQASALF 590

Query: 193 LRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
             +V   ++PD  T+  L++G  K   V  A+    +++  +G  P NV  Y++ +  L 
Sbjct: 591 EEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDIL-DLMGNLGVPP-NVVTYNALVHGLC 648

Query: 253 KGCDGIYETVNSLKRMMERGCNP-GMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRP 311
           K    I E    L+ M+  GC P  +T+  L +  C   +     + +  + +   G+ P
Sbjct: 649 KS-GRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLV--SELKSFGWDP 705

Query: 312 DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLF 371
           DT  YN+++     S +T  A+ +L+EMV  G  PD+ TYN L + L K   L EA  L 
Sbjct: 706 DTVTYNILVDGLWKSGQTEQAITVLEEMVGKGHHPDVVTYNTLIDSLCKAGDLEEARRLH 765

Query: 372 NEM-----------VKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSE- 419
            +M           V   +VL +  C+      +D      A +  + M+   C  L   
Sbjct: 766 GDMSSRVSRCCVPNVVTYSVLINGLCKVG---RIDE-----ARELIQEMMRKSCDVLPNI 817

Query: 420 -TGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTP 453
            T N  + GLC   M+ EA +  + + +  ++V+P
Sbjct: 818 ITYNSFLDGLCKQSMMAEACELMRSLRDGSLRVSP 852



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 81/355 (22%), Positives = 150/355 (42%), Gaps = 14/355 (3%)

Query: 128 KKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCK--HDVFALNSLLSAICRDGK 185
            +  V ++ T++ + +      R+ +A      M +  C    ++   NS L  +C+   
Sbjct: 279 SRSCVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSM 338

Query: 186 TIDAWQFLRVV-DG--RIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVP 242
           T +A + +R + DG  R+ PD  T++ L++G  K   +  A   F +M I  G+ P NV 
Sbjct: 339 TAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDM-IAGGYVP-NVI 396

Query: 243 AYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGA 302
            Y++ +  L K  D +      ++ M+++G  P +  + +  +       +  A  +   
Sbjct: 397 TYNALVNGLCKA-DKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHG 455

Query: 303 MVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVY-NGAFPDIQTYNILFEFLVKG 361
           M  R G  P+   +N +I   C S+ +G A ++ D+M   +G  PD  TY  L + L + 
Sbjct: 456 MASR-GCTPNVVTFNSIIDGLCKSDRSGEAFQMFDDMALKHGLVPDKITYCTLIDGLFRT 514

Query: 362 RKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETG 421
            +  +A  L + M   +      NC   +       D   A++ +  M+E        T 
Sbjct: 515 GRAGQAEALLDAMPDPDTY--AFNC--CINGLSKLGDVSRALQVYNRMLELELVPDKVTF 570

Query: 422 NLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELL 476
           N+L+AG C      +A    + M  K +Q        L   L KA +     ++L
Sbjct: 571 NILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDIL 625



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 92/396 (23%), Positives = 150/396 (37%), Gaps = 53/396 (13%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSL----------ATFASVFSSYVVADRVK 152
           A NL  D++    L D +  A +     ++L L           T+ ++      + R++
Sbjct: 595 AKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIE 654

Query: 153 DAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR----------------VV 196
           +A    + M   GC  D     SL+ A+CR  +T DA Q +                 +V
Sbjct: 655 EACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSELKSFGWDPDTVTYNILV 714

Query: 197 DGRIK--------------------PDNDTYAILLEGWEKERDVANAKKTFGEMVIEVG- 235
           DG  K                    PD  TY  L++   K  D+  A++  G+M   V  
Sbjct: 715 DGLWKSGQTEQAITVLEEMVGKGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRVSR 774

Query: 236 WDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCN--PGMTFFKLAFEECLTGQNL 293
               NV  Y S LI  L     I E    ++ MM + C+  P +  +  +F + L  Q++
Sbjct: 775 CCVPNVVTY-SVLINGLCKVGRIDEARELIQEMMRKSCDVLPNIITYN-SFLDGLCKQSM 832

Query: 294 --RGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTY 351
                E +     G +   PDT  ++ +I   C   +T  A  + D+M+  G  P++ TY
Sbjct: 833 MAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEACNVFDDMIAGGYVPNVVTY 892

Query: 352 NILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIE 411
           N+L   L K  K+  A  +   MV      +       V  +  +     A++    M  
Sbjct: 893 NVLMNGLCKTDKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASHVDEALELLHGMAS 952

Query: 412 NHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEK 447
             C+    T N ++ GLC      EA +    M  K
Sbjct: 953 RGCTPNVVTFNSIIDGLCKSDQSGEAFQMFDDMTLK 988



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 74/292 (25%), Positives = 111/292 (38%), Gaps = 42/292 (14%)

Query: 165 GCKHDVFALNSLLSAICRDGKTIDAWQFLRV-VDGRIKPDNDTYAILLEGWEKERDVANA 223
           G KH +F+ N  L+ + + G    A    R  +  R +P++ TY+ LL    K     + 
Sbjct: 106 GFKHTIFSFNKYLNLLVKSGSPAKAIDLFRSRLPPRCRPNHFTYSTLLRATYKAG--GDV 163

Query: 224 KKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLA 283
           ++T G     +     +V  Y+  L +L                                
Sbjct: 164 ERTLG-FFRRIRSSSRSVADYNIVLQSL-------------------------------- 190

Query: 284 FEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNG 343
              C  G+  R  E   G M  R G  P    YN +I+  C SNE GA M+L +E+V  G
Sbjct: 191 ---CRAGETARALEIFRGEM-ARDGVAPTIVTYNTIINGLCKSNELGAGMELFEELVERG 246

Query: 344 AFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAI 403
             PD+ TYN L + L K   L EA  L  +M     V N       +           A 
Sbjct: 247 HHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRSCVPNVVTYSVLINGLCKVGRIDEAR 306

Query: 404 KFWKYMIENHCSDLSE--TGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTP 453
           +  + M    C  L    T N  + GLC   M  EA +  + + +  ++V+P
Sbjct: 307 ELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSP 358



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 103/447 (23%), Positives = 183/447 (40%), Gaps = 19/447 (4%)

Query: 13  PSPDPHNKRKRSTFASHLDVPNLPPTIKTLCEIIANT-PSPTVEDVLDKTLIRVSQETVE 71
           PSP P+ +R     A+    P L    +++ E + +  P  +V   L     R+      
Sbjct: 22  PSPSPNPRRGGGGSAAGNCKPLLAEDPRSISEALESLRPGQSVVAALRGCKGRLHPSVAA 81

Query: 72  QVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMK--- 128
            +L     +     +F+ W+A     KH+ +++N  ++LL K+       D  +S     
Sbjct: 82  AILAQLDGNAELGTQFYDWAAALPGFKHTIFSFNKYLNLLVKSGSPAKAIDLFRSRLPPR 141

Query: 129 -KENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTI 187
            + N  + +T   + ++Y     V+  +  F  +        V   N +L ++CR G+T 
Sbjct: 142 CRPNHFTYSTL--LRATYKAGGDVERTLGFFRRIRSS--SRSVADYNIVLQSLCRAGETA 197

Query: 188 DAWQFLRVVDGR--IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYD 245
            A +  R    R  + P   TY  ++ G  K  ++    + F E+V E G  PD V  Y+
Sbjct: 198 RALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELGAGMELFEELV-ERGHHPD-VVTYN 255

Query: 246 SYLITLLKGCDGIYETVNSLKRMMERGCNPG-MTFFKLAFEECLTGQNLRGAEFIWGAMV 304
           + + +L K  D + E       M  R C P  +T+  L    C  G+     E I     
Sbjct: 256 TLIDSLCKAGD-LEEARRLHGDMSSRSCVPNVVTYSVLINGLCKVGRIDEARELIQEMTR 314

Query: 305 GRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAF---PDIQTYNILFEFLVKG 361
                 P+   YN  +   C  + T  A +L+  +  +G+    PD  T++ L + L K 
Sbjct: 315 KSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSL-RDGSLRVSPDTVTFSTLIDGLCKC 373

Query: 362 RKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETG 421
            ++ EA  +F++M+    V N     A V     +D    A    + M++   +    T 
Sbjct: 374 GQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITY 433

Query: 422 NLLVAGLCDMHMLPEAVKYAKGMAEKG 448
           ++LV   C    + EA++   GMA +G
Sbjct: 434 SVLVDAFCKASRVDEALELLHGMASRG 460



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 77/332 (23%), Positives = 131/332 (39%), Gaps = 43/332 (12%)

Query: 92  AYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRV 151
           A QL  +   + W+   D +  N L D +W   KS + E                     
Sbjct: 691 ALQLVSELKSFGWD--PDTVTYNILVDGLW---KSGQTEQ-------------------- 725

Query: 152 KDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIK----PDNDTY 207
             AIT  + M   G   DV   N+L+ ++C+ G   +A +    +  R+     P+  TY
Sbjct: 726 --AITVLEEMVGKGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRVSRCCVPNVVTY 783

Query: 208 AILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLK------GCDGIYET 261
           ++L+ G  K   +  A++   EM+ +      N+  Y+S+L  L K       C    E 
Sbjct: 784 SVLINGLCKVGRIDEARELIQEMMRKSCDVLPNIITYNSFLDGLCKQSMMAEAC----EL 839

Query: 262 VNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMIS 321
           + SL+    R     +TF  L    C  GQ           + G  G+ P+   YN++++
Sbjct: 840 MRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEACNVFDDMIAG--GYVPNVVTYNVLMN 897

Query: 322 LYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVL 381
             C +++   A  +++ MV  G  PD+ TY++L +   K   + EA  L + M       
Sbjct: 898 GLCKTDKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASHVDEALELLHGMASRGCTP 957

Query: 382 NHENCRAAVRVYMDSDDPYVAIKFWKYMIENH 413
           N     + +     SD    A + +  M   H
Sbjct: 958 NVVTFNSIIDGLCKSDQSGEAFQMFDDMTLKH 989



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 77/343 (22%), Positives = 141/343 (41%), Gaps = 17/343 (4%)

Query: 132  VLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCK--HDVFALNSLLSAICRDGKTIDA 189
            V ++ T++ + +      R+ +A      M +  C    ++   NS L  +C+     +A
Sbjct: 777  VPNVVTYSVLINGLCKVGRIDEARELIQEMMRKSCDVLPNIITYNSFLDGLCKQSMMAEA 836

Query: 190  WQFLRVV-DG--RIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDS 246
             + +R + DG  R+ PD  T++ L++G  K      A   F +M I  G+ P NV  Y+ 
Sbjct: 837  CELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEACNVFDDM-IAGGYVP-NVVTYNV 894

Query: 247  YLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGR 306
             +  L K  D +      ++ M+++G  P +  + +  +      ++  A  +   M  R
Sbjct: 895  LMNGLCKT-DKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASHVDEALELLHGMASR 953

Query: 307  IGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVY-NGAFPDIQTYNILFEFLVKGRKLW 365
             G  P+   +N +I   C S+++G A ++ D+M   +G  PD  TY  L + L +     
Sbjct: 954  -GCTPNVVTFNSIIDGLCKSDQSGEAFQMFDDMTLKHGLAPDKITYCTLIDGLFRTGWAG 1012

Query: 366  EASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLV 425
            +A  L + M  + +      C   +    D        +    M+E        T N+L+
Sbjct: 1013 QAEVLLDAM-PDPDTYAFNCCINGLSKLGDVS------RALHRMLELELVPDKVTFNILI 1065

Query: 426  AGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARK 468
            AG C      +A    + M  K +Q        L   L KA +
Sbjct: 1066 AGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQ 1108



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 89/387 (22%), Positives = 151/387 (39%), Gaps = 21/387 (5%)

Query: 104 WNLVVDLLGKNCLFDAMWDAIKSMKKENVL---SLATFASVFSSYVVADRVKDAITTFDV 160
           +N  +D L K  +     + ++S++  ++       TF+++        ++ +A + FD 
Sbjct: 326 YNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDD 385

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYAILLEGWEKERD 219
           M   G   +V   N+L++ +C+  K   A   +  +VD  + PD  TY++L++ + K   
Sbjct: 386 MIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASR 445

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRM-MERGCNPG-- 276
           V  A +    M    G  P NV  ++S +  L K  D   E       M ++ G  P   
Sbjct: 446 VDEALELLHGMASR-GCTP-NVVTFNSIIDGLCKS-DRSGEAFQMFDDMALKHGLVPDKI 502

Query: 277 --MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMK 334
              T     F     GQ    AE +  AM       PDT+ +N  I+      +   A++
Sbjct: 503 TYCTLIDGLFRTGRAGQ----AEALLDAMP-----DPDTYAFNCCINGLSKLGDVSRALQ 553

Query: 335 LLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYM 394
           + + M+     PD  T+NIL     K     +AS LF EMV      +     A +    
Sbjct: 554 VYNRMLELELVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLC 613

Query: 395 DSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPF 454
            +     A      M          T N LV GLC    + EA ++ + M   G      
Sbjct: 614 KAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSI 673

Query: 455 ALSKLKQILIKARKEAVYEELLKKCKA 481
               L   L +A +     +L+ + K+
Sbjct: 674 TYGSLVYALCRASRTDDALQLVSELKS 700



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 71/281 (25%), Positives = 115/281 (40%), Gaps = 24/281 (8%)

Query: 104  WNLVVDLLGKNCLFDAMWDAIKSMKKENVL---SLATFASVFSSYVVADRVKDAITTFDV 160
            +N  +D L K  +     + ++S++  ++       TF+++        +  +A   FD 
Sbjct: 820  YNSFLDGLCKQSMMAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEACNVFDD 879

Query: 161  MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYAILLEGWEKERD 219
            M   G   +V   N L++ +C+  K   A   +  +VD  + PD  TY++L++ + K   
Sbjct: 880  MIAGGYVPNVVTYNVLMNGLCKTDKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASH 939

Query: 220  VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRM-MERGCNPG-- 276
            V  A +    M    G  P NV  ++S +  L K  D   E       M ++ G  P   
Sbjct: 940  VDEALELLHGMASR-GCTP-NVVTFNSIIDGLCKS-DQSGEAFQMFDDMTLKHGLAPDKI 996

Query: 277  --MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMK 334
               T     F     GQ    AE +  AM       PDT+ +N  I+     ++ G   +
Sbjct: 997  TYCTLIDGLFRTGWAGQ----AEVLLDAMP-----DPDTYAFNCCINGL---SKLGDVSR 1044

Query: 335  LLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
             L  M+     PD  T+NIL     K     +AS LF EMV
Sbjct: 1045 ALHRMLELELVPDKVTFNILIAGACKAGNFEQASALFEEMV 1085


>gi|356544498|ref|XP_003540687.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Glycine max]
          Length = 623

 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 84/393 (21%), Positives = 158/393 (40%), Gaps = 39/393 (9%)

Query: 93  YQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRV 151
           +++N + S Y +N+++++L K        + I  M+   V  ++ T+ ++   + +  + 
Sbjct: 208 FRMNIRSSLYTFNIMINVLCKEGKLKKAKEFIGHMETLGVKPNVVTYNTIIHGHCLRGKF 267

Query: 152 KDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAIL 210
           + A   F  M+  G + D +  NS +S +C++G+  +A   + ++++G + P+  TY  L
Sbjct: 268 QRARVIFQTMKDKGLEPDCYTYNSFISGLCKEGRLEEASGLICKMLEGGLVPNAVTYNAL 327

Query: 211 LEGWEKERDVANAKKTFGEMVI----------------------------------EVGW 236
           ++G+  + D+  A     EM+                                   E G 
Sbjct: 328 IDGYCNKGDLDKAYAYRDEMISKGIMASLVTYNLFIHALFMEGRMGDADNMIKEMREKGM 387

Query: 237 DPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGA 296
            PD V    + LI     C         L  M+ +G  P +  +            ++ A
Sbjct: 388 MPDAVT--HNILINGYCRCGDAKRAFGLLDEMVGKGIQPTLVTYTSLIYVLGKRNRMKEA 445

Query: 297 EFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFE 356
           + ++ + + + G  PD  ++N +I  +C +     A +LL EM      PD  TYN L +
Sbjct: 446 DALF-SKIQQEGLLPDIIVFNALIDGHCANGNIDRAFQLLKEMDNMKVLPDEITYNTLMQ 504

Query: 357 FLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSD 416
              +  K+ EA  L +EM +     +H +    +  Y    D   A +    M+      
Sbjct: 505 GYCREGKVEEARQLLDEMKRRGIKPDHISYNTLISGYSKRGDMKDAFRVRDEMMTTGFDP 564

Query: 417 LSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
              T N L+ GLC       A +  K M  KGI
Sbjct: 565 TILTYNALIQGLCKNQEGEHAEELLKEMVSKGI 597



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 98/224 (43%), Gaps = 40/224 (17%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           +L T+ S+       +R+K+A   F  ++Q G   D+   N+L+   C +G    A+Q L
Sbjct: 425 TLVTYTSLIYVLGKRNRMKEADALFSKIQQEGLLPDIIVFNALIDGHCANGNIDRAFQLL 484

Query: 194 RVVDG-RIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
           + +D  ++ PD  TY  L++G+ +E  V  A++   EM    G  PD++ +Y+    TL+
Sbjct: 485 KEMDNMKVLPDEITYNTLMQGYCREGKVEEARQLLDEMK-RRGIKPDHI-SYN----TLI 538

Query: 253 KGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD 312
            G               +RG                   +++ A  +   M+   GF P 
Sbjct: 539 SGYS-------------KRG-------------------DMKDAFRVRDEMM-TTGFDPT 565

Query: 313 THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFE 356
              YN +I   C + E   A +LL EMV  G  PD  TY  + E
Sbjct: 566 ILTYNALIQGLCKNQEGEHAEELLKEMVSKGITPDDSTYLSIIE 609



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 84/380 (22%), Positives = 158/380 (41%), Gaps = 83/380 (21%)

Query: 116 LFDAMWDAIKSMKKEN--------------VLSLATFASVFSSYVVADRVKDAITTFDVM 161
           +FD +  A   +KK N              V ++ T   + S ++  +R + A   +  M
Sbjct: 148 IFDLLVRAYCELKKPNEALECFYLIKEKGFVPNIETCNQMLSLFLKLNRTQMAWVLYAEM 207

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDG-RIKPDNDTYAILLEGWEKERDV 220
            +   +  ++  N +++ +C++GK   A +F+  ++   +KP+  TY  ++ G       
Sbjct: 208 FRMNIRSSLYTFNIMINVLCKEGKLKKAKEFIGHMETLGVKPNVVTYNTIIHGHCLRGKF 267

Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLK-RMMERG------- 272
             A+  F  M  + G +PD    Y+S++  L K  +G  E  + L  +M+E G       
Sbjct: 268 QRARVIFQTMK-DKGLEPD-CYTYNSFISGLCK--EGRLEEASGLICKMLEGGLVPNAVT 323

Query: 273 --------CNPGMTFFKLAFEECLTGQNLRGAEFIWGA------MVGRI----------- 307
                   CN G      A+ + +  + +  +   +        M GR+           
Sbjct: 324 YNALIDGYCNKGDLDKAYAYRDEMISKGIMASLVTYNLFIHALFMEGRMGDADNMIKEMR 383

Query: 308 --GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLW 365
             G  PD   +N++I+ YC   +   A  LLDEMV  G  P + TY  L   L K  ++ 
Sbjct: 384 EKGMMPDAVTHNILINGYCRCGDAKRAFGLLDEMVGKGIQPTLVTYTSLIYVLGKRNRMK 443

Query: 366 EASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNL-- 423
           EA  LF++ ++ E +L                 P + +  +  +I+ HC++    GN+  
Sbjct: 444 EADALFSK-IQQEGLL-----------------PDIIV--FNALIDGHCAN----GNIDR 479

Query: 424 ---LVAGLCDMHMLPEAVKY 440
              L+  + +M +LP+ + Y
Sbjct: 480 AFQLLKEMDNMKVLPDEITY 499



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 82/386 (21%), Positives = 149/386 (38%), Gaps = 52/386 (13%)

Query: 103 AWNLVVDL-LGKNCLFDAMWDAIKSMKKENVLSLAT--FASVFSSYVVADRVKDAITTFD 159
           + NL+  L L   C    ++D + ++ ++ V +  T  F  +  +Y    +  +A+  F 
Sbjct: 112 SINLIQRLILSPTCTNRTIFDEL-ALARDRVDAKTTLIFDLLVRAYCELKKPNEALECFY 170

Query: 160 VMEQYGCKHDVFALNSLLSAICRDGKTIDAW-QFLRVVDGRIKPDNDTYAILLEGWEKER 218
           ++++ G   ++   N +LS   +  +T  AW  +  +    I+    T+ I++    KE 
Sbjct: 171 LIKEKGFVPNIETCNQMLSLFLKLNRTQMAWVLYAEMFRMNIRSSLYTFNIMINVLCKEG 230

Query: 219 DVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG--CDGIYETVNSL-KRMMERGCNP 275
            +  AK+  G M   +G  P NV  Y+    T++ G    G ++    + + M ++G  P
Sbjct: 231 KLKKAKEFIGHMET-LGVKP-NVVTYN----TIIHGHCLRGKFQRARVIFQTMKDKGLEP 284

Query: 276 G-MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMK 334
              T+       C  G+    +  I   + G  G  P+   YN +I  YC   +   A  
Sbjct: 285 DCYTYNSFISGLCKEGRLEEASGLICKMLEG--GLVPNAVTYNALIDGYCNKGDLDKAYA 342

Query: 335 LLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYM 394
             DEM+  G    + TYN+    L    ++ +A  +  EM +                  
Sbjct: 343 YRDEMISKGIMASLVTYNLFIHALFMEGRMGDADNMIKEMRE------------------ 384

Query: 395 DSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPF 454
                       K M+ +     + T N+L+ G C       A      M  KGIQ T  
Sbjct: 385 ------------KGMMPD-----AVTHNILINGYCRCGDAKRAFGLLDEMVGKGIQPTLV 427

Query: 455 ALSKLKQILIKARKEAVYEELLKKCK 480
             + L  +L K  +    + L  K +
Sbjct: 428 TYTSLIYVLGKRNRMKEADALFSKIQ 453


>gi|357502217|ref|XP_003621397.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496412|gb|AES77615.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 550

 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 85/358 (23%), Positives = 157/358 (43%), Gaps = 31/358 (8%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           TF ++ +   +  ++K+A+   D +   G   D  +  +L++ +C+ G+T  A Q L+ +
Sbjct: 131 TFNTLINGICLNGKLKEALHFHDHVIALGFHLDQVSYRTLINGLCKIGETRAALQMLKKI 190

Query: 197 DGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
           +G+ +  D   Y I++    K++ V++A + + EM+ +    PD V  ++S LI      
Sbjct: 191 EGKLVNTDVVMYNIIINSLCKDKAVSDAYQLYSEMITK-RISPD-VVTFNS-LILGFCVV 247

Query: 256 DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHM 315
             + E       M+ +  NP +  F +  +      N+  A+ +   M+ + G  PD   
Sbjct: 248 GQLKEAFGLFHEMVLKNINPDVYTFSILVDALCKDGNITRAKNMLAVMMKQ-GVIPDVVT 306

Query: 316 YNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM- 374
           Y+ ++  YC  NE   A  +   M   G  P   +YNI+   L K + + EA  LF EM 
Sbjct: 307 YSSLMDGYCLVNEVNKAKHVFSTMSRLGVAPHAHSYNIMINGLGKIKMVDEALSLFKEMC 366

Query: 375 -------VKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSE---TGNLL 424
                      N L    C+     Y            W+ + E H + +     T N L
Sbjct: 367 CKGIAPDTVTYNSLIDGLCKLGRISYA-----------WQLVDEMHNNGIPADILTYNSL 415

Query: 425 VAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARK----EAVYEELLKK 478
           +  LC  H + +A+   K + ++GIQ + +  + L   L K  +    + V+++LL K
Sbjct: 416 IDVLCKNHHIDKAIALVKKIKDQGIQPSMYTYNILIDGLCKGGRLKNAQDVFQDLLIK 473



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 92/390 (23%), Positives = 153/390 (39%), Gaps = 67/390 (17%)

Query: 104 WNLVVDLLGKN-CLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVME 162
           +N++++ L K+  + DA     + + K     + TF S+   + V  ++K+A   F  M 
Sbjct: 202 YNIIINSLCKDKAVSDAYQLYSEMITKRISPDVVTFNSLILGFCVVGQLKEAFGLFHEMV 261

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVA 221
                 DV+  + L+ A+C+DG    A   L V+  + + PD  TY+ L++G+    +V 
Sbjct: 262 LKNINPDVYTFSILVDALCKDGNITRAKNMLAVMMKQGVIPDVVTYSSLMDGYCLVNEVN 321

Query: 222 NAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFK 281
            AK  F  M   +G      P   SY I            +N L ++  +  +  ++ FK
Sbjct: 322 KAKHVFSTMS-RLGV----APHAHSYNIM-----------INGLGKI--KMVDEALSLFK 363

Query: 282 LAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVY 341
              E C  G                    PDT  YN +I   C       A +L+DEM  
Sbjct: 364 ---EMCCKG------------------IAPDTVTYNSLIDGLCKLGRISYAWQLVDEMHN 402

Query: 342 NGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM--------VKNENVLNHENCRA----- 388
           NG   DI TYN L + L K   + +A  L  ++        +   N+L    C+      
Sbjct: 403 NGIPADILTYNSLIDVLCKNHHIDKAIALVKKIKDQGIQPSMYTYNILIDGLCKGGRLKN 462

Query: 389 AVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448
           A  V+ D      ++  W Y             N+++ GLC   +  EA      M   G
Sbjct: 463 AQDVFQDLLIKGYSVNAWTY-------------NIMINGLCKEGLFNEAEVLLSKMENNG 509

Query: 449 IQVTPFALSKLKQILIKARKEAVYEELLKK 478
           I         + + L +  +    E+LL++
Sbjct: 510 IIPDAVTYETIIRALFRKDENEKAEKLLRE 539



 Score = 41.6 bits (96), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 57/110 (51%), Gaps = 3/110 (2%)

Query: 267 RMMERGCNPG-MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCY 325
           ++++ G +P  +TF  L    CL G+ L+ A      ++  +GF  D   Y  +I+  C 
Sbjct: 119 KILKLGYHPTTITFNTLINGICLNGK-LKEALHFHDHVIA-LGFHLDQVSYRTLINGLCK 176

Query: 326 SNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
             ET AA+++L ++       D+  YNI+   L K + + +A  L++EM+
Sbjct: 177 IGETRAALQMLKKIEGKLVNTDVVMYNIIINSLCKDKAVSDAYQLYSEMI 226



 Score = 41.6 bits (96), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 58/251 (23%), Positives = 98/251 (39%), Gaps = 10/251 (3%)

Query: 219 DVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMME-RGCNPGM 277
           DV N   +F  M + +   P ++  ++  L +++K  +  Y T  SL   +E +G  P +
Sbjct: 37  DVNNDVSSFHRM-LRMRPTP-SIVEFNKILGSIVKANNNHYTTAISLSHQLELKGITPTI 94

Query: 278 TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLD 337
             F +    C          F   A + ++G+ P T  +N +I+  C + +   A+   D
Sbjct: 95  VTFNI-LVNCYCHLGEMTFAFSIFAKILKLGYHPTTITFNTLINGICLNGKLKEALHFHD 153

Query: 338 EMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNEN-VLNHENCRAAVRVYMDS 396
            ++  G   D  +Y  L   L    K+ E       + K E  ++N +     + +    
Sbjct: 154 HVIALGFHLDQVSYRTLINGLC---KIGETRAALQMLKKIEGKLVNTDVVMYNIIINSLC 210

Query: 397 DDPYV--AIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPF 454
            D  V  A + +  MI    S    T N L+ G C +  L EA      M  K I    +
Sbjct: 211 KDKAVSDAYQLYSEMITKRISPDVVTFNSLILGFCVVGQLKEAFGLFHEMVLKNINPDVY 270

Query: 455 ALSKLKQILIK 465
             S L   L K
Sbjct: 271 TFSILVDALCK 281



 Score = 41.2 bits (95), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 30/133 (22%), Positives = 63/133 (47%), Gaps = 2/133 (1%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVM 161
            +N ++D+L KN   D     +K +K + +  S+ T+  +        R+K+A   F  +
Sbjct: 411 TYNSLIDVLCKNHHIDKAIALVKKIKDQGIQPSMYTYNILIDGLCKGGRLKNAQDVFQDL 470

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERDV 220
              G   + +  N +++ +C++G   +A   L ++ +  I PD  TY  ++    ++ + 
Sbjct: 471 LIKGYSVNAWTYNIMINGLCKEGLFNEAEVLLSKMENNGIIPDAVTYETIIRALFRKDEN 530

Query: 221 ANAKKTFGEMVIE 233
             A+K   EM+I 
Sbjct: 531 EKAEKLLREMIIR 543


>gi|414865374|tpg|DAA43931.1| TPA: hypothetical protein ZEAMMB73_168023 [Zea mays]
          Length = 793

 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 97/402 (24%), Positives = 160/402 (39%), Gaps = 55/402 (13%)

Query: 110 LLGKNCLFDAMWDA---IKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVMEQYG 165
           LL  +C    + +A   +  MKKE ++ + AT+ ++ S+Y     +K A    + M  +G
Sbjct: 250 LLNAHCRKGMLGEARTLLARMKKEGIVPTRATYNTLVSAYARLGWIKQATDVVEAMTAFG 309

Query: 166 CKHDVFALNSLLSAICRDGKTIDAWQFLRVVD--GRIKPDNDTYAILLEGWEKERDVANA 223
            + D++  N L + +C+ GK  +A++    ++  G + PD  TY  L++   K +  ++A
Sbjct: 310 FEPDLWTYNVLAAGLCQAGKVDEAFKLKDEMEQLGIVSPDVVTYNTLVDACFKCQRSSDA 369

Query: 224 KKTFGEMVIEVGWDPDNVPAYDSYLIT---LLKGC---DGIYETVNSLKRMMERGCNPGM 277
                EM               S L+T   ++KG      + E +  L+ M E G  P +
Sbjct: 370 LNLLEEM---------REKGVKSSLVTHNIIVKGLCREGQLEEALGRLEMMTEEGLTPDV 420

Query: 278 TFFKLAFEECLTGQNLRGAEFIWGAMV--------------------------------- 304
             +    +      N+  A  +   MV                                 
Sbjct: 421 ITYNTLIDASCKAGNVAKAFVLMDEMVRSGLKMDTFTLNTLLYNLCKEKRYEEAEELLRA 480

Query: 305 -GRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRK 363
             + GF PD   Y  +++ Y    +   A+ L DEM+     P I TYN L + L    K
Sbjct: 481 PPQRGFVPDEVSYGTVMAAYFKEYKPEPALCLWDEMIKRKLTPSISTYNTLIKGLSTMGK 540

Query: 364 LWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNL 423
           L EA    NE+++   V +       +  Y    D   A +F   M+EN       T N 
Sbjct: 541 LTEAIDKLNELMEMGLVPDDTTYNIIIHAYCKEGDLEKAFQFHNKMVENSFKPDVVTCNT 600

Query: 424 LVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIK 465
           L+ GLC    L +A+K  +   EKG +V     + L Q L K
Sbjct: 601 LMNGLCLYGRLEKAMKLFESWVEKGKKVDVITYNTLIQALCK 642



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 88/351 (25%), Positives = 135/351 (38%), Gaps = 43/351 (12%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RV 195
           TF  +  ++     + DA++T   M+ +G   D    N+LL+A CR G   +A   L R+
Sbjct: 211 TFNLLVHTHCSKGTLADALSTLSKMQGFGLSPDAVTYNTLLNAHCRKGMLGEARTLLARM 270

Query: 196 VDGRIKPDNDTYAILLE-----GWEKE-RDVANAKKTFG--------------------- 228
               I P   TY  L+      GW K+  DV  A   FG                     
Sbjct: 271 KKEGIVPTRATYNTLVSAYARLGWIKQATDVVEAMTAFGFEPDLWTYNVLAAGLCQAGKV 330

Query: 229 -------EMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFK 281
                  + + ++G    +V  Y++ +    K C    + +N L+ M E+G    +    
Sbjct: 331 DEAFKLKDEMEQLGIVSPDVVTYNTLVDACFK-CQRSSDALNLLEEMREKGVKSSLVTHN 389

Query: 282 LAFEE-CLTGQNLRGAEFIWG--AMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDE 338
           +  +  C  GQ     E   G   M+   G  PD   YN +I   C +     A  L+DE
Sbjct: 390 IIVKGLCREGQ----LEEALGRLEMMTEEGLTPDVITYNTLIDASCKAGNVAKAFVLMDE 445

Query: 339 MVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDD 398
           MV +G   D  T N L   L K ++  EA  L     +   V +  +    +  Y     
Sbjct: 446 MVRSGLKMDTFTLNTLLYNLCKEKRYEEAEELLRAPPQRGFVPDEVSYGTVMAAYFKEYK 505

Query: 399 PYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
           P  A+  W  MI+   +    T N L+ GL  M  L EA+     + E G+
Sbjct: 506 PEPALCLWDEMIKRKLTPSISTYNTLIKGLSTMGKLTEAIDKLNELMEMGL 556



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 97/414 (23%), Positives = 160/414 (38%), Gaps = 44/414 (10%)

Query: 98  KHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAIT 156
           K S    N++V  L +    +     ++ M +E +   + T+ ++  +   A  V  A  
Sbjct: 382 KSSLVTHNIIVKGLCREGQLEEALGRLEMMTEEGLTPDVITYNTLIDASCKAGNVAKAFV 441

Query: 157 TFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWE 215
             D M + G K D F LN+LL  +C++ +  +A + LR    R   PD  +Y  ++  + 
Sbjct: 442 LMDEMVRSGLKMDTFTLNTLLYNLCKEKRYEEAEELLRAPPQRGFVPDEVSYGTVMAAYF 501

Query: 216 KERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNP 275
           KE     A   + EM I+    P ++  Y++ LI  L     + E ++ L  +ME G  P
Sbjct: 502 KEYKPEPALCLWDEM-IKRKLTP-SISTYNT-LIKGLSTMGKLTEAIDKLNELMEMGLVP 558

Query: 276 GMTFFKLAFEECLTGQNLRGAEFIWGAMV---------------------GRI------- 307
             T + +         +L  A      MV                     GR+       
Sbjct: 559 DDTTYNIIIHAYCKEGDLEKAFQFHNKMVENSFKPDVVTCNTLMNGLCLYGRLEKAMKLF 618

Query: 308 ------GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKG 361
                 G + D   YN +I   C  N+   A++   +M   G  PD+ TYN+L   L + 
Sbjct: 619 ESWVEKGKKVDVITYNTLIQALCKDNDVDTALRFFADMEVRGLQPDVFTYNVLLSALSEA 678

Query: 362 RKLWEASGLF---NEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLS 418
            +  EA  +    NE  K      + + +++V       DP V        + N   D  
Sbjct: 679 GRSVEAQKMLHKLNESGKLYGRFFYPSIKSSVEAVETGKDPEVKSDIES--VGNTQGDDQ 736

Query: 419 ETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVY 472
           E+ N  +  LC    L EA      M +KG+ V       L + LIK +K   +
Sbjct: 737 ESYNKYIKELCIGGQLKEAKAVLDEMMQKGMSVDNSTYITLMEGLIKRQKRQTH 790



 Score = 43.5 bits (101), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 56/158 (35%), Gaps = 27/158 (17%)

Query: 309 FRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEAS 368
             P+ + +N+++  +C       A+  L +M   G  PD  TYN L     +   L EA 
Sbjct: 205 LHPNHYTFNLLVHTHCSKGTLADALSTLSKMQGFGLSPDAVTYNTLLNAHCRKGMLGEAR 264

Query: 369 GLFNEMVKNENVLNHENCRAAVRVY---------MDSDDPYVAIKF----WKYMIENHCS 415
            L   M K   V         V  Y          D  +   A  F    W Y       
Sbjct: 265 TLLARMKKEGIVPTRATYNTLVSAYARLGWIKQATDVVEAMTAFGFEPDLWTY------- 317

Query: 416 DLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTP 453
                 N+L AGLC    + EA K    M + GI V+P
Sbjct: 318 ------NVLAAGLCQAGKVDEAFKLKDEMEQLGI-VSP 348


>gi|297797091|ref|XP_002866430.1| hypothetical protein ARALYDRAFT_496296 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297312265|gb|EFH42689.1| hypothetical protein ARALYDRAFT_496296 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 489

 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 95/405 (23%), Positives = 164/405 (40%), Gaps = 63/405 (15%)

Query: 26  FASH--LDVPNLPPTIKTLCEIIANTPSPT-----VEDVLDKTLIRVSQETVEQVLKFSY 78
           F SH  +D P+   T   L E+I    SP      +E  L++  +  S   V QV++   
Sbjct: 23  FCSHHLVDRPDRAST--ELQEVIRIVSSPIGGLDDLEKNLNQVSVSPSSNLVTQVIESCK 80

Query: 79  SHPGPA--VKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKEN-VLSL 135
           +   P   ++FF WS   L        +N V+ +L +     A+   +  +++EN  +  
Sbjct: 81  NETSPRRLLRFFSWSCKSLGSNVHDKEFNHVLRVLAEKKDHTAIQILLSDLRQENRAMDK 140

Query: 136 ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRV 195
            TF+ V  + V   + +DAI  F +++++ C  D F + +++SA+C  G    A   +  
Sbjct: 141 QTFSIVAETLVKIGKEEDAIGIFKILDKFLCPQDSFTVTAIISALCSRGHVKRALGVMHH 200

Query: 196 VDGRIKPDN-DTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPD--------------N 240
               I  +    Y  LL GW  +R+V  A++   +M    G  PD              N
Sbjct: 201 HKDAISGNELSVYRSLLFGWSVQRNVKEARRVIQDMK-SAGITPDLFCFNSLLTCLCERN 259

Query: 241 V------------------------PAYDSY--LITLLKGCDGIYETVNSLKRMMERGCN 274
           V                        P   SY  L++ L     + E+   L++M   GC+
Sbjct: 260 VNRNPSGLVPEALNIMLEMRSYKIQPTSISYNILLSCLGRTRRVRESCQILEQMKRSGCD 319

Query: 275 PGMTFFKLAFEEC-LTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAM 333
           P    +        LTG+  +G + +   M+ R G RP+   Y  +I + C       A+
Sbjct: 320 PDTASYYFVVRVLYLTGRFGKGNQIV-DEMIER-GLRPEHKFYYDLIGVLCGVERVNFAL 377

Query: 334 KLLDEMVYNGAFPDIQTYNILFEFLV------KGRKLWEASGLFN 372
           +L ++M  +        Y++L   L       KG++LWE +   N
Sbjct: 378 QLFEKMKRSSVDGYGPVYDLLIPKLCKGGNFEKGKELWEEAMSLN 422


>gi|255540881|ref|XP_002511505.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550620|gb|EEF52107.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 876

 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 82/328 (25%), Positives = 143/328 (43%), Gaps = 9/328 (2%)

Query: 52  PTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLL 111
           P  E+ L      +      QVLK    H   A+ FF W   Q    H  + +  +V +L
Sbjct: 332 PAAEEALANLNYSMDPYQANQVLKQLQDHT-VALNFFYWLKRQPGFNHDGHTYTTMVGIL 390

Query: 112 GKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDV 170
           G+   F A+   +  M K+    ++ T+  +  SY  A+ + DA+  F+ M++ GC+ D 
Sbjct: 391 GRAKQFGAINKLLDQMVKDGCQPNVVTYNRLIHSYGRANYLNDAVDVFNEMQRVGCEPDR 450

Query: 171 FALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGE 229
               +L+    + G    A + + R+    + PD  TY++++    K   +A A K F E
Sbjct: 451 VTYCTLIDIHAKAGFLDFALEMYQRMQAAGLSPDTFTYSVIINCLGKAGHLAAAHKLFCE 510

Query: 230 MVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKR-MMERGCNPGMTFFKLAFEECL 288
           MV E G  P N+  Y+  ++  L+     Y++   L R M   G  P    + +  E   
Sbjct: 511 MV-EQGCVP-NLVTYN--IMIALQAKARNYQSALKLYRDMQSAGFQPDKVTYSIVMEVLG 566

Query: 289 TGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDI 348
               L  AE ++  M  R  + PD  +Y +++ L+  +     A +    M+  G  P++
Sbjct: 567 HCGYLDEAEAVFSEM-KRKNWVPDEPVYGLLVDLWGKAGNVEKAWQWYQTMLNTGLRPNV 625

Query: 349 QTYNILFEFLVKGRKLWEASGLFNEMVK 376
            T N L    ++  KL +A  L   M++
Sbjct: 626 PTCNSLLSAFLRVHKLADAYNLLQSMLE 653



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 78/309 (25%), Positives = 132/309 (42%), Gaps = 24/309 (7%)

Query: 172 ALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMV 231
           A+N LL  + +DG                +P+  TY  L+  + +   + +A   F EM 
Sbjct: 398 AINKLLDQMVKDG---------------CQPNVVTYNRLIHSYGRANYLNDAVDVFNEMQ 442

Query: 232 IEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECL-TG 290
             VG +PD V  Y + LI +      +   +   +RM   G +P  TF       CL   
Sbjct: 443 -RVGCEPDRV-TYCT-LIDIHAKAGFLDFALEMYQRMQAAGLSPD-TFTYSVIINCLGKA 498

Query: 291 QNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQT 350
            +L  A  ++  MV + G  P+   YN+MI+L   +    +A+KL  +M   G  PD  T
Sbjct: 499 GHLAAAHKLFCEMVEQ-GCVPNLVTYNIMIALQAKARNYQSALKLYRDMQSAGFQPDKVT 557

Query: 351 YNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMI 410
           Y+I+ E L     L EA  +F+EM +   V +       V ++  + +   A ++++ M+
Sbjct: 558 YSIVMEVLGHCGYLDEAEAVFSEMKRKNWVPDEPVYGLLVDLWGKAGNVEKAWQWYQTML 617

Query: 411 ENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKE- 469
                    T N L++    +H L +A    + M E G+  +    + L     +AR   
Sbjct: 618 NTGLRPNVPTCNSLLSAFLRVHKLADAYNLLQSMLELGLNPSLQTYTLLLSCCTEARSPY 677

Query: 470 --AVYEELL 476
              +Y EL+
Sbjct: 678 DMGIYCELM 686


>gi|356577033|ref|XP_003556634.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Glycine max]
          Length = 757

 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 76/312 (24%), Positives = 137/312 (43%), Gaps = 41/312 (13%)

Query: 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDV 160
           Y +N+++  +      +     ++ M+KE +  ++ T+ ++  +     +VK+A+     
Sbjct: 208 YTYNVIIRGVVSQGDLEKGLGFMRKMEKEGISPNVVTYNTLIDASCKKKKVKEAMALLRA 267

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERD 219
           M   G   ++ + NS+++ +C  G+  +  + +  + G+ + PD  TY  L+ G+ KE +
Sbjct: 268 MAVGGVAANLISYNSVINGLCGKGRMSEVGELVEEMRGKGLVPDEVTYNTLVNGFCKEGN 327

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG------------------------- 254
           +        EMV + G  P NV  Y + +  + K                          
Sbjct: 328 LHQGLVLLSEMVGK-GLSP-NVVTYTTLINCMCKAGNLSRAVEIFDQMRVRGLRPNERTY 385

Query: 255 ---CDG------IYETVNSLKRMMERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMV 304
               DG      + E    L  M+  G +P + T+  L    C  G+ ++ A  I   MV
Sbjct: 386 TTLIDGFCQKGLMNEAYKVLSEMIVSGFSPSVVTYNALVHGYCFLGR-VQEAVGILRGMV 444

Query: 305 GRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKL 364
            R G  PD   Y+ +I+ +C   E G A ++ +EMV  G  PD  TY+ L + L   +KL
Sbjct: 445 ER-GLPPDVVSYSTVIAGFCRERELGKAFQMKEEMVEKGVLPDTVTYSSLIQGLCLQQKL 503

Query: 365 WEASGLFNEMVK 376
            EA  LF EM++
Sbjct: 504 VEAFDLFREMMR 515



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 80/332 (24%), Positives = 142/332 (42%), Gaps = 11/332 (3%)

Query: 153 DAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILL 211
           DA   F  M + G   +V+  N ++  +   G       F+R ++   I P+  TY  L+
Sbjct: 190 DAERVFRDMVRNGVSPNVYTYNVIIRGVVSQGDLEKGLGFMRKMEKEGISPNVVTYNTLI 249

Query: 212 EGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMER 271
           +   K++ V  A      M   VG    N+ +Y+S +I  L G   + E    ++ M  +
Sbjct: 250 DASCKKKKVKEAMALLRAMA--VGGVAANLISYNS-VINGLCGKGRMSEVGELVEEMRGK 306

Query: 272 GCNPG-MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETG 330
           G  P  +T+  L    C  G NL     +   MVG+ G  P+   Y  +I+  C +    
Sbjct: 307 GLVPDEVTYNTLVNGFCKEG-NLHQGLVLLSEMVGK-GLSPNVVTYTTLINCMCKAGNLS 364

Query: 331 AAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAV 390
            A+++ D+M   G  P+ +TY  L +   +   + EA  + +EM+ +    +     A V
Sbjct: 365 RAVEIFDQMRVRGLRPNERTYTTLIDGFCQKGLMNEAYKVLSEMIVSGFSPSVVTYNALV 424

Query: 391 RVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQ 450
             Y        A+   + M+E        + + ++AG C    L +A +  + M EKG+ 
Sbjct: 425 HGYCFLGRVQEAVGILRGMVERGLPPDVVSYSTVIAGFCRERELGKAFQMKEEMVEKGVL 484

Query: 451 VTPFALSKLKQILIKARK--EA--VYEELLKK 478
                 S L Q L   +K  EA  ++ E++++
Sbjct: 485 PDTVTYSSLIQGLCLQQKLVEAFDLFREMMRR 516



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 77/316 (24%), Positives = 132/316 (41%), Gaps = 27/316 (8%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           ++ T+ ++ +    A  +  A+  FD M   G + +     +L+   C+ G   +A++ L
Sbjct: 346 NVVTYTTLINCMCKAGNLSRAVEIFDQMRVRGLRPNERTYTTLIDGFCQKGLMNEAYKVL 405

Query: 194 R--VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITL 251
              +V G   P   TY  L+ G+     V  A      MV E G  PD V +Y + +   
Sbjct: 406 SEMIVSG-FSPSVVTYNALVHGYCFLGRVQEAVGILRGMV-ERGLPPD-VVSYSTVIAGF 462

Query: 252 LKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRP 311
            +  + + +     + M+E+G  P    +    +     Q L  A  ++  M+ R G  P
Sbjct: 463 CRERE-LGKAFQMKEEMVEKGVLPDTVTYSSLIQGLCLQQKLVEAFDLFREMMRR-GLPP 520

Query: 312 DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLF 371
           D   Y  +I+ YC   E   A++L DEMV  G  PD  TY++L   L K  +   A  L 
Sbjct: 521 DEVTYTSLINAYCVDGELSKALRLHDEMVQRGFLPDNVTYSVLINGLNKKARTKVAKRLL 580

Query: 372 NEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDM 431
            ++   E+V                DD       +  +IEN  ++  ++   LV G C  
Sbjct: 581 LKLFYEESV---------------PDDVT-----YNTLIENCSNNEFKSVEGLVKGFCMK 620

Query: 432 HMLPEAVKYAKGMAEK 447
            ++ EA +  K M ++
Sbjct: 621 GLMNEADRVFKTMLQR 636



 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 82/332 (24%), Positives = 133/332 (40%), Gaps = 30/332 (9%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTI-----D 188
           S A F  V  S      V  A+T   +  ++G    V + N++L A+ R   +      D
Sbjct: 131 SSAVFDLVVKSLSRLGFVPKALTLLHLANRHGFAPTVLSYNAVLDALLRRSSSNHRDYDD 190

Query: 189 AWQFLR-VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSY 247
           A +  R +V   + P+  TY +++ G   + D+        +M  E G  P NV  Y++ 
Sbjct: 191 AERVFRDMVRNGVSPNVYTYNVIIRGVVSQGDLEKGLGFMRKMEKE-GISP-NVVTYNTL 248

Query: 248 LITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRI 307
           +    K    + E +  L+ M   G    +    +++   + G   +G     G +V  +
Sbjct: 249 IDASCKK-KKVKEAMALLRAMAVGGVAANL----ISYNSVINGLCGKGRMSEVGELVEEM 303

Query: 308 ---GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKL 364
              G  PD   YN +++ +C        + LL EMV  G  P++ TY  L   + K   L
Sbjct: 304 RGKGLVPDEVTYNTLVNGFCKEGNLHQGLVLLSEMVGKGLSPNVVTYTTLINCMCKAGNL 363

Query: 365 WEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYV-------AIKFWKYMIENHCSDL 417
             A  +F++M            R   R Y    D +        A K    MI +  S  
Sbjct: 364 SRAVEIFDQM-------RVRGLRPNERTYTTLIDGFCQKGLMNEAYKVLSEMIVSGFSPS 416

Query: 418 SETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
             T N LV G C +  + EAV   +GM E+G+
Sbjct: 417 VVTYNALVHGYCFLGRVQEAVGILRGMVERGL 448



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 60/263 (22%), Positives = 117/263 (44%), Gaps = 32/263 (12%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           S+ T+ ++   Y    RV++A+     M + G   DV + +++++  CR+ +   A+Q  
Sbjct: 416 SVVTYNALVHGYCFLGRVQEAVGILRGMVERGLPPDVVSYSTVIAGFCRERELGKAFQMK 475

Query: 194 R-VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
             +V+  + PD  TY+ L++G   ++ +  A   F EM +  G  PD V    +Y   + 
Sbjct: 476 EEMVEKGVLPDTVTYSSLIQGLCLQQKLVEAFDLFREM-MRRGLPPDEV----TYTSLIN 530

Query: 253 KGC-DG-IYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFR 310
             C DG + + +     M++RG  P      + +   + G N +    +   ++ ++ + 
Sbjct: 531 AYCVDGELSKALRLHDEMVQRGFLPD----NVTYSVLINGLNKKARTKVAKRLLLKLFYE 586

Query: 311 ---PDTHMYNMMISLYCYSNE--------TGAAMK-LLDE-------MVYNGAFPDIQTY 351
              PD   YN +I   C +NE         G  MK L++E       M+     P+   Y
Sbjct: 587 ESVPDDVTYNTLIE-NCSNNEFKSVEGLVKGFCMKGLMNEADRVFKTMLQRNHKPNAAIY 645

Query: 352 NILFEFLVKGRKLWEASGLFNEM 374
           N++     +G  + +A  L+ E+
Sbjct: 646 NLMIHGHSRGGNVHKAYNLYMEL 668



 Score = 39.7 bits (91), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 45/221 (20%), Positives = 86/221 (38%), Gaps = 8/221 (3%)

Query: 235 GWDPDNVPAYDSYLITLLKGCDGIYETVNSLKR----MMERGCNPGMTFFKLAFEECLTG 290
           G+ P  V +Y++ L  LL+     +   +  +R    M+  G +P +  + +     ++ 
Sbjct: 162 GFAP-TVLSYNAVLDALLRRSSSNHRDYDDAERVFRDMVRNGVSPNVYTYNVIIRGVVSQ 220

Query: 291 QNL-RGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQ 349
            +L +G  F+    + + G  P+   YN +I   C   +   AM LL  M   G   ++ 
Sbjct: 221 GDLEKGLGFMR--KMEKEGISPNVVTYNTLIDASCKKKKVKEAMALLRAMAVGGVAANLI 278

Query: 350 TYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYM 409
           +YN +   L    ++ E   L  EM     V +       V  +    + +  +     M
Sbjct: 279 SYNSVINGLCGKGRMSEVGELVEEMRGKGLVPDEVTYNTLVNGFCKEGNLHQGLVLLSEM 338

Query: 410 IENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQ 450
           +    S    T   L+  +C    L  AV+    M  +G++
Sbjct: 339 VGKGLSPNVVTYTTLINCMCKAGNLSRAVEIFDQMRVRGLR 379


>gi|357455845|ref|XP_003598203.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355487251|gb|AES68454.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 503

 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 97/412 (23%), Positives = 160/412 (38%), Gaps = 17/412 (4%)

Query: 80  HPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATF 138
           H   A+    +S    N   S  ++NL++D++ K   FD     I  M + N+  +  TF
Sbjct: 74  HSKIALSLHNFSKSLPNPPLSLQSYNLLIDIVSKVHQFDLASQLIVEMDQINLPPTPTTF 133

Query: 139 ASVFSSYVVADRVKDAITTFDVMEQYG-CKHDVFALNSLLSAICRDGKTIDAWQFLRVVD 197
             +    + A+  + A+  F+ +E Y   K        LL  +C+ G    A +      
Sbjct: 134 FILIKRLISANLTRQAVRAFNEIESYTDTKLTSDHFTYLLDTLCKYGYVKHACELFNRNS 193

Query: 198 GRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD- 256
            R   D   Y +L+ GW K      A     EM ++ G +P NV  Y+  L  + +    
Sbjct: 194 NRFVADVKMYTVLIYGWCKIGRFKTALSFLNEMKVK-GVEP-NVVTYNVILNGICRKASL 251

Query: 257 --------GIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIG 308
                    I +       M E G  P +T F +           +      G M  + G
Sbjct: 252 HPEERFERTIRDAEKVFDEMRESGIEPDVTSFSIVLHVYSRAHKPQLVLDKLGLMKEK-G 310

Query: 309 FRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEAS 368
             P+   Y  +I   C       A  L+DEMV NG  P   TYN  F+   +GRK  + +
Sbjct: 311 ICPNVVTYTSVIKCLCSCGRIEEAEDLIDEMVRNGVSPCAATYNCFFK-EYRGRKDADKA 369

Query: 369 GLFNEMVKNENVLNHENCRAAVRV--YMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVA 426
             F + +K + +         V +  ++ +D   V  + W  M+E+      ++  +L+ 
Sbjct: 370 LKFFKKMKEDGLCEPTTHTYGVLIAMFLKADMIGVVKEIWNDMMESGVGPDLDSYTVLIH 429

Query: 427 GLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKK 478
           GLC+     EA +Y   M EKG          L + LI++     +  L K+
Sbjct: 430 GLCESKKWREACQYFVEMIEKGFLPQKVTFETLYRGLIQSDMLRTWRRLKKR 481


>gi|297820862|ref|XP_002878314.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324152|gb|EFH54573.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 475

 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 94/334 (28%), Positives = 146/334 (43%), Gaps = 25/334 (7%)

Query: 57  VLDKTLIRVSQETVEQVL-----KFSYSHPGP----AVKFFRWSAYQLNDKHSPYAWNLV 107
           VLD+  +RVS   V +VL       SY +       A +FF WS  Q   +H+  +++L+
Sbjct: 98  VLDELNVRVSGLLVREVLVGILRNLSYDNKTRCARLAYRFFVWSGEQDCFRHTVNSYHLL 157

Query: 108 VDLLGKNCLFDAMWDAIKSMKKENVLSLA-TFASVFSSYVVADRVKDAITTFDVMEQYG- 165
           + +  +   + AMW  +  M ++   + A TF  +  S   A   K A+  F   + +  
Sbjct: 158 MKIFAECGEYKAMWRLVDEMVQDGFPTTARTFNLLICSCGEAGLAKQAVVQFMKSKTFNY 217

Query: 166 --CKHDVFA-LNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKER--DV 220
              KH   A LNSLL    +  K I+ W + ++++    PD  TY ILL  W   R   +
Sbjct: 218 RPFKHSYNAILNSLLGV--KQYKLIE-WVYEQMLEDGFSPDVLTYNILL--WTNYRLGKM 272

Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFF 280
               + F EM  + G  PD    Y+  L  L KG   +   + +L  M E G +  +  +
Sbjct: 273 DRFDRLFDEMARD-GLSPD-FYTYNILLHILGKGNKPL-AALTTLNHMKEVGIDLSVLHY 329

Query: 281 KLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMV 340
               +      NL   ++    MV + G RPD   Y +MI+ Y  S E   A ++  EM 
Sbjct: 330 TTLIDGLSRAGNLEACKYFLDEMV-KAGCRPDVVCYTVMITGYVVSGELEKAKEMFKEMT 388

Query: 341 YNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
             G  P++ TYN +   L    +  EA  L  EM
Sbjct: 389 VEGQLPNVFTYNSMIRGLCMAGEFREACWLLKEM 422



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 59/128 (46%), Gaps = 4/128 (3%)

Query: 154 AITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLE 212
           A+TT + M++ G    V    +L+  + R G       FL  +V    +PD   Y +++ 
Sbjct: 310 ALTTLNHMKEVGIDLSVLHYTTLIDGLSRAGNLEACKYFLDEMVKAGCRPDVVCYTVMIT 369

Query: 213 GWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERG 272
           G+    ++  AK+ F EM +E G  P NV  Y+S +  L    +   E    LK M  RG
Sbjct: 370 GYVVSGELEKAKEMFKEMTVE-GQLP-NVFTYNSMIRGLCMAGE-FREACWLLKEMESRG 426

Query: 273 CNPGMTFF 280
           CNP    +
Sbjct: 427 CNPNFVVY 434



 Score = 39.3 bits (90), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 67/173 (38%), Gaps = 16/173 (9%)

Query: 304 VGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRK 363
           + R G  PD + YN+++ +    N+  AA+  L+ M   G    +  Y  L + L +   
Sbjct: 282 MARDGLSPDFYTYNILLHILGKGNKPLAALTTLNHMKEVGIDLSVLHYTTLIDGLSRAGN 341

Query: 364 LWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYV-------AIKFWKYM-IENHCS 415
           L       +EMVK         CR  V  Y      YV       A + +K M +E    
Sbjct: 342 LEACKYFLDEMVK-------AGCRPDVVCYTVMITGYVVSGELEKAKEMFKEMTVEGQLP 394

Query: 416 DLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARK 468
           ++  T N ++ GLC      EA    K M  +G        S L   L KA K
Sbjct: 395 NVF-TYNSMIRGLCMAGEFREACWLLKEMESRGCNPNFVVYSTLVSYLRKAGK 446


>gi|302792250|ref|XP_002977891.1| hypothetical protein SELMODRAFT_107819 [Selaginella moellendorffii]
 gi|300154594|gb|EFJ21229.1| hypothetical protein SELMODRAFT_107819 [Selaginella moellendorffii]
          Length = 385

 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 69/255 (27%), Positives = 114/255 (44%), Gaps = 5/255 (1%)

Query: 130 ENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDA 189
           E V +  T+ S+ S    A+R  +A    + M   GC  D+F   +L++  C+  K+ DA
Sbjct: 49  EEVPTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDA 108

Query: 190 WQ-FLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYL 248
            + F ++V    +PD  TY+ L++G  KE  +  A   FG M+      P+ V  Y+S L
Sbjct: 109 LRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTV-TYNS-L 166

Query: 249 ITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIG 308
           I+       + E +N L+RM E G +P +  +            L  A  +   M  R G
Sbjct: 167 ISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMT-RKG 225

Query: 309 FRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEAS 368
             P+   +  ++   C  N    A+ +L EM      P + TYN + +   +  +L EA 
Sbjct: 226 LTPNVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRVNQLEEAR 285

Query: 369 G-LFNEMVKNENVLN 382
             +  EM    NV++
Sbjct: 286 KFMLEEMDCPPNVVS 300



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/250 (25%), Positives = 114/250 (45%), Gaps = 10/250 (4%)

Query: 135 LATFASVFSSYVVADRVKDAITTFDVMEQYG-CKHDVFALNSLLSAICRDGKTIDAWQFL 193
           + T++ +        R+K+AI  F  M + G C  +    NSL+S  CR GK  +A   L
Sbjct: 124 VVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLL 183

Query: 194 -RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
            R+ +    PD  TY  L+ G+ K   + +A     +M  + G  P NV  + S +  L 
Sbjct: 184 ERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRK-GLTP-NVVTFTSLMDGLC 241

Query: 253 KGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEE-CLTGQNLRGAEFIWGAMVGRIGFRP 311
           +  + + + V+ L  M  + C+P +  +    +  C   Q     +F    M+  +   P
Sbjct: 242 RE-NRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRVNQLEEARKF----MLEEMDCPP 296

Query: 312 DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLF 371
           +   +N+MI   C  N +  AM+L++E       PD+  Y  + + L + +K+ EA  ++
Sbjct: 297 NVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDVLCREKKVDEACRVY 356

Query: 372 NEMVKNENVL 381
            +M++    L
Sbjct: 357 RKMLEEPGCL 366



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 72/269 (26%), Positives = 111/269 (41%), Gaps = 41/269 (15%)

Query: 174 NSLLSAICRDGKTIDAWQFLR--VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMV 231
           NSL+S +C+  +  +A+  L   V  G I PD  TY  L+ G+ K +   +A + F E +
Sbjct: 58  NSLISGLCKAERASEAYDLLEEMVYSGCI-PDIFTYTTLITGFCKSKKSDDALRVF-EQL 115

Query: 232 IEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQ 291
           +  G+ PD V    S LI      DG+              C  G               
Sbjct: 116 VARGFRPDVVTY--SCLI------DGL--------------CKEG--------------- 138

Query: 292 NLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTY 351
            L+ A  ++G M+      P+T  YN +IS +C   +   AM LL+ M   G+ PD+ TY
Sbjct: 139 RLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTY 198

Query: 352 NILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIE 411
             L     K  +L +A  L N+M +     N     + +      +    A+     M  
Sbjct: 199 TTLMNGFCKLARLDDAYDLLNQMTRKGLTPNVVTFTSLMDGLCRENRLSDAVHILGEMRR 258

Query: 412 NHCSDLSETGNLLVAGLCDMHMLPEAVKY 440
             CS    T N ++ G C ++ L EA K+
Sbjct: 259 KSCSPTVYTYNTILDGYCRVNQLEEARKF 287



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 65/149 (43%), Gaps = 1/149 (0%)

Query: 301 GAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVK 360
           GA V      P    YN +IS  C +     A  LL+EMVY+G  PDI TY  L     K
Sbjct: 42  GAAVQDAEEVPTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCK 101

Query: 361 GRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIEN-HCSDLSE 419
            +K  +A  +F ++V      +       +           AI  +  MI++  C   + 
Sbjct: 102 SKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTV 161

Query: 420 TGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448
           T N L++G C M  + EA+   + MAE G
Sbjct: 162 TYNSLISGFCRMGKMDEAMNLLERMAETG 190



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 71/162 (43%), Gaps = 1/162 (0%)

Query: 308 GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEA 367
           G  PD   Y  +I+ +C S ++  A+++ +++V  G  PD+ TY+ L + L K  +L EA
Sbjct: 84  GCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEA 143

Query: 368 SGLFNEMVKNENVL-NHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVA 426
             LF  M+K+ + + N     + +  +        A+   + M E   S    T   L+ 
Sbjct: 144 IDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMN 203

Query: 427 GLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARK 468
           G C +  L +A      M  KG+       + L   L +  +
Sbjct: 204 GFCKLARLDDAYDLLNQMTRKGLTPNVVTFTSLMDGLCRENR 245


>gi|147771990|emb|CAN69053.1| hypothetical protein VITISV_022963 [Vitis vinifera]
          Length = 2021

 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 80/312 (25%), Positives = 137/312 (43%), Gaps = 9/312 (2%)

Query: 136 ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRV 195
            TF ++     V  ++ +A+  FD M   G + +V    +L++ +C+ G T  A + LR 
Sbjct: 136 TTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRS 195

Query: 196 VD-GRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG 254
           ++ G  +PD   Y  +++   K+R V  A   F +MV + G  PD +  Y S +  L   
Sbjct: 196 MEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQ-GISPD-IFTYTSLVHALCNL 253

Query: 255 CDGIYETVNSLKRMMERGCNPGMTFFKLAFEE-CLTGQNLRGAEFIWGAMVGRIGFRPDT 313
           C+  + T   L +M+     P +  F    +  C  G+     E +   M+ + G  PD 
Sbjct: 254 CEWKHVT-TLLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIV--DMMIQRGVEPDV 310

Query: 314 HMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNE 373
             Y  ++  +C  +E   A+K+ D MV  G  PD+ +Y  L     K  K+ +A  LF E
Sbjct: 311 VTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEE 370

Query: 374 MVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMI-ENHCSDLSETGNLLVAGLCDMH 432
           M + E + + +     +           AI  +  M+      DL  T ++L+  LC   
Sbjct: 371 MCRKEWIPDTKTYNTLMYGLCHVGRLQDAIALFHEMVARGQMPDLV-TYSILLDSLCKNR 429

Query: 433 MLPEAVKYAKGM 444
            L EA+   K +
Sbjct: 430 HLEEAMALLKAI 441



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 67/277 (24%), Positives = 119/277 (42%), Gaps = 5/277 (1%)

Query: 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FL 193
           +  F++V  +     +V +A    D+M Q G + DV    +L+   C   +  +A + F 
Sbjct: 275 VVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFD 334

Query: 194 RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLK 253
            +V     PD  +Y  L+ G+ K   +  A   F EM  +  W PD    Y++ +  L  
Sbjct: 335 MMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKE-WIPDT-KTYNTLMYGLCH 392

Query: 254 GCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDT 313
               + + +     M+ RG  P +  + +  +     ++L  A  +  A+       PD 
Sbjct: 393 -VGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNRHLEEAMALLKAIEAS-NLNPDI 450

Query: 314 HMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNE 373
            +YN++I   C + E  AA  L   +   G  P + TYNI+   L K   L EA+ LF E
Sbjct: 451 QVYNIIIDGMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEANKLFME 510

Query: 374 MVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMI 410
           M  N+   +        R ++ +++   AI+  + M+
Sbjct: 511 MDGNDCSPDGCTYNTIARGFLQNNETLRAIQLLEEML 547



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 78/347 (22%), Positives = 144/347 (41%), Gaps = 7/347 (2%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRV 195
           T   + +S+   +RV  A +    + + G + D     +L+  +C +GK  +A   F ++
Sbjct: 102 TLNILINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKM 161

Query: 196 VDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
           +D   +P+  TY  L+ G  K  + + A +    M  E G    +V  Y S + +L K  
Sbjct: 162 IDEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSM--EQGNCQPDVVIYTSIIDSLCKDR 219

Query: 256 DGIYETVNSLKRMMERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTH 314
             + E  N   +M+ +G +P + T+  L    C   +  +    +   MV      PD  
Sbjct: 220 Q-VTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCE-WKHVTTLLNQMVNS-KILPDVV 276

Query: 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
           +++ ++   C   +   A +++D M+  G  PD+ TY  L +      ++ EA  +F+ M
Sbjct: 277 IFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMM 336

Query: 375 VKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHML 434
           V+     +  +    +  Y        A+  ++ M        ++T N L+ GLC +  L
Sbjct: 337 VRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMYGLCHVGRL 396

Query: 435 PEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKCKA 481
            +A+     M  +G        S L   L K R       LLK  +A
Sbjct: 397 QDAIALFHEMVARGQMPDLVTYSILLDSLCKNRHLEEAMALLKAIEA 443



 Score = 47.0 bits (110), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 56/249 (22%), Positives = 95/249 (38%), Gaps = 40/249 (16%)

Query: 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDA-WQFL 193
           + T+ ++   + +   + +A+  FD+M + G   DV +  +L++  C+  K   A + F 
Sbjct: 310 VVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFE 369

Query: 194 RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLK 253
            +      PD  TY  L+ G      + +A   F EMV   G  PD V  Y   L +L K
Sbjct: 370 EMCRKEWIPDTKTYNTLMYGLCHVGRLQDAIALFHEMVAR-GQMPDLV-TYSILLDSLCK 427

Query: 254 GCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDT 313
               + E +  LK +     NP +  + +  +       L  A  ++  +  + G  P  
Sbjct: 428 N-RHLEEAMALLKAIEASNLNPDIQVYNIIIDGMCRAGELEAARDLFSNLSSK-GLHPSV 485

Query: 314 HMYNMMISLYC-----------------------------------YSNETGAAMKLLDE 338
             YN+MI   C                                    +NET  A++LL+E
Sbjct: 486 WTYNIMIHGLCKRGLLNEANKLFMEMDGNDCSPDGCTYNTIARGFLQNNETLRAIQLLEE 545

Query: 339 MVYNGAFPD 347
           M+  G   D
Sbjct: 546 MLARGFSAD 554



 Score = 42.7 bits (99), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 65/180 (36%), Gaps = 14/180 (7%)

Query: 259 YETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNM 318
           Y TV SL   M+    P   +            N  G  F   A + ++G +PD   +  
Sbjct: 81  YSTVLSLSTQMDSFGVPPNVYTLNILINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTT 140

Query: 319 MISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNE 378
           +I   C   + G A+ L D+M+  G  P++ TY  L   L K      A  L   M +  
Sbjct: 141 LIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQG- 199

Query: 379 NVLNHENCRAAVRVYMDSDDPYV-------AIKFWKYMIENHCSDLSETGNLLVAGLCDM 431
                 NC+  V +Y    D          A   +  M+    S    T   LV  LC++
Sbjct: 200 ------NCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNL 253


>gi|357458533|ref|XP_003599547.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355488595|gb|AES69798.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 636

 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 82/347 (23%), Positives = 153/347 (44%), Gaps = 9/347 (2%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           TF ++     +  +VK+A+   D +   G   D F+  +L++ +C+ G+T  A Q LR +
Sbjct: 140 TFNTLIKGLCLNGKVKEALHFHDHVLALGFHLDQFSYGTLINGLCKIGETRTALQMLRKI 199

Query: 197 DGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
           DG+ +K +   Y  +++   K + V +A + + +M+ +    PD V    S LI      
Sbjct: 200 DGKLVKINVVMYNTIIDSLCKHKLVIDAYELYSQMIAK-KISPDVVTF--SALIYGFCIV 256

Query: 256 DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHM 315
             + E     + M+ +  NP    F +  +      NL+GA+ +   M+   G  P+   
Sbjct: 257 GQLEEAFGLFREMVLKNINPDYYTFNILVDALCKEGNLKGAKNMLVVMMKE-GVMPNVVT 315

Query: 316 YNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
           Y+ ++  YC  N+   A  +L+ +   GA P+  +Y  +     K + + EA  LFN+M 
Sbjct: 316 YSSLMDGYCLVNQVNKAKHVLNTISQMGAAPNAHSYCTMINGFCKIKMVDEALSLFNDMQ 375

Query: 376 KNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLP 435
                 +     + +     S     A +    M +N       T N L+  LC  H + 
Sbjct: 376 FKGIAPDKVTYNSLIDGLCKSGRISYAWELVDEMHDNGQPANIFTYNCLIDALCKNHHVD 435

Query: 436 EAVKYAKGMAEKGIQVTPFALSKLKQILIKARK----EAVYEELLKK 478
           +A+   K + ++GIQ   +  + L   L K  +    + V+++LL K
Sbjct: 436 QAIALVKKIKDQGIQPDMYTFNILIYGLCKVGRLKNAQDVFQDLLSK 482



 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 70/300 (23%), Positives = 136/300 (45%), Gaps = 8/300 (2%)

Query: 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDV 160
           Y +N++VD L K        + +  M KE V+ ++ T++S+   Y + ++V  A    + 
Sbjct: 279 YTFNILVDALCKEGNLKGAKNMLVVMMKEGVMPNVVTYSSLMDGYCLVNQVNKAKHVLNT 338

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERD 219
           + Q G   +  +  ++++  C+     +A      +  + I PD  TY  L++G  K   
Sbjct: 339 ISQMGAAPNAHSYCTMINGFCKIKMVDEALSLFNDMQFKGIAPDKVTYNSLIDGLCKSGR 398

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGM-T 278
           ++ A +   EM       P N+  Y+  +  L K    + + +  +K++ ++G  P M T
Sbjct: 399 ISYAWELVDEM--HDNGQPANIFTYNCLIDALCKN-HHVDQAIALVKKIKDQGIQPDMYT 455

Query: 279 FFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDE 338
           F  L +  C  G+ L+ A+ ++  ++ + G+  +   YN+M++  C       A  LL +
Sbjct: 456 FNILIYGLCKVGR-LKNAQDVFQDLLSK-GYSVNAWTYNIMVNGLCKEGLFDEAEALLSK 513

Query: 339 MVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDD 398
           M  NG  PD  TY  L + L    +  +A  L  EM+  + V   E     + +  ++ D
Sbjct: 514 MDDNGIIPDAVTYETLIQALFHKDENEKAEKLLREMIARDVVYALEGLEMVLHLESEAKD 573



 Score = 38.9 bits (89), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 32/60 (53%)

Query: 308 GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEA 367
           G  PD   +N++I+ YC+  E   A  ++ +++  G  PD  T+N L + L    K+ EA
Sbjct: 98  GITPDIFTFNILINCYCHMAEMNFAFSMMAKILKMGYEPDTITFNTLIKGLCLNGKVKEA 157


>gi|255543335|ref|XP_002512730.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547741|gb|EEF49233.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 552

 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 83/358 (23%), Positives = 154/358 (43%), Gaps = 9/358 (2%)

Query: 106 LVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYG 165
           L+V +LG +  F+  W  I+ M + ++    T   +   Y  AD    AI  F++ME++ 
Sbjct: 160 LIVWILGNHRKFNNAWIVIRDMHQLSMNIQQTMLIMIDRYAAADNPGKAIEVFNIMEKFK 219

Query: 166 CKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKP-DNDTYAILLEGW-EKERDVANA 223
              D  A  SL++A+C  G   +A +F+ VV+ ++ P + + + ++L GW     ++  A
Sbjct: 220 MAPDEEAFYSLMNALCNHGYIEEAEEFM-VVNKKLFPLETEGFNVILNGWCSICVNLLEA 278

Query: 224 KKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLA 283
           K+ + EM  +    P N  +Y +++I+       +++++     M +RG  PGM  +  +
Sbjct: 279 KRVWREMS-KCCITP-NATSY-THMISCFSKVGNLFDSLRLYDEMKKRGWLPGMEVYN-S 334

Query: 284 FEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNG 343
               LT +N       +   +  +G +PD+  YN MI   C   +   A  +L  M+   
Sbjct: 335 LIYVLTRENCFKEALRFLDKMKEVGLQPDSTTYNSMIRPLCEGKKLVEARSVLATMIEEN 394

Query: 344 AFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAI 403
             P ++TY+ L E  V+         + N M         +     +  +   +    A+
Sbjct: 395 ISPTMETYHALLE--VENSDFEATLEVLNRMTVAGLAPTDDTFLLVLAKFFKLEQAENAL 452

Query: 404 KFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQ 461
           K W  M +   +       +LV GL    +L +A +    M   G    P     LK+
Sbjct: 453 KMWIEMKQYEVTPNLTHYKILVEGLVRCGLLAKARECYADMRSNGFTDDPKLQKMLKE 510


>gi|5738362|emb|CAB52870.1| putative protein [Arabidopsis thaliana]
 gi|7268785|emb|CAB78991.1| putative protein [Arabidopsis thaliana]
          Length = 1302

 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 91/354 (25%), Positives = 152/354 (42%), Gaps = 21/354 (5%)

Query: 106  LVVDLLGKNCLFD-AMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQY 164
            L++  L +N L + A+W   K +      +L  F S+         +K A    + M + 
Sbjct: 858  LILTALCENGLVNRAIWYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRN 917

Query: 165  GCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRI-KPDNDTYAILLEGWEKERDVAN 222
            G K +V+   +L+  +C+ G T  A++ FL++V     KP+  TY  ++ G+ KE  +  
Sbjct: 918  GWKPNVYTHTALIDGLCKRGWTEKAFRLFLKLVRSDTYKPNVHTYTSMIGGYCKEDKLNR 977

Query: 223  AKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG-CDG-----IYETVNSLKRMMERGCNPG 276
            A+  F  M  E G  P NV  Y     TL+ G C        YE +N    M + G  P 
Sbjct: 978  AEMLFSRMK-EQGLFP-NVNTY----TTLINGHCKAGSFGRAYELMN---LMGDEGFMPN 1028

Query: 277  MTFFKLAFEE-CLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKL 335
            +  +  A +  C   +     E +  A     G   D   Y ++I   C  N+   A+  
Sbjct: 1029 IYTYNAAIDSLCKKSRAPEAYELLNKAF--SCGLEADGVTYTILIQEQCKQNDINQALAF 1086

Query: 336  LDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMD 395
               M   G   D++  NIL     + +K+ E+  LF  +V    +   E   + +  Y  
Sbjct: 1087 FCRMNKTGFEADMRLNNILIAAFCRQKKMKESERLFQLVVSLGLIPTKETYTSMISCYCK 1146

Query: 396  SDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
              D  +A+K++  M  + C   S T   L++GLC   M+ EA K  + M ++G+
Sbjct: 1147 EGDIDLALKYFHNMKRHGCVPDSFTYGSLISGLCKKSMVDEACKLYEAMIDRGL 1200


>gi|224133318|ref|XP_002321537.1| predicted protein [Populus trichocarpa]
 gi|222868533|gb|EEF05664.1| predicted protein [Populus trichocarpa]
          Length = 834

 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 80/326 (24%), Positives = 140/326 (42%), Gaps = 7/326 (2%)

Query: 52  PTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLL 111
           P+ E+ L      +      QVLK    H   A+ FF W       KH  Y +  +V +L
Sbjct: 290 PSAEEALVNLNCHMDAYQANQVLKQLQDHT-VALGFFHWLKQLPGFKHDGYTYTTMVGIL 348

Query: 112 GKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDV 170
           G+   F A+   +  M ++    ++ T+  +  SY  A+ + DA+  F+ M++ GC+ D 
Sbjct: 349 GRAKQFVAINKLLDQMVRDGCQPTVVTYNRLIHSYGRANYLNDAVEVFNQMQKAGCEPDR 408

Query: 171 FALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGE 229
               +L+    + G    A + + R+    + PD  TY++++    K   +A A K F E
Sbjct: 409 VTYCTLIDIHAKAGFLNFAMEMYQRMQAAGLSPDTFTYSVMINCLGKAGHLAAADKLFCE 468

Query: 230 MVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLT 289
           M IE G  P N+  Y+  +I L          +   + M   G  P    + +  E    
Sbjct: 469 M-IEQGCVP-NLVTYN-IMIALQAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGH 525

Query: 290 GQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQ 349
              L  AE I+  M  R  + PD  +Y +++ L+  +     A +    M++ G  P++ 
Sbjct: 526 SGYLDEAEAIFSEM-KRKNWVPDEPVYGLLVDLWGKAGNVEKAWEWYQAMLHAGLCPNVP 584

Query: 350 TYNILFEFLVKGRKLWEASGLFNEMV 375
           T N L    ++  +L +A  L   M+
Sbjct: 585 TCNSLLSAFLRVNRLPDAYNLLQSML 610



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 78/345 (22%), Positives = 152/345 (44%), Gaps = 11/345 (3%)

Query: 129 KENVLSLATFASVFSSYVVADRVKD---AITTFDVMEQY-GCKHDVFALNSLLSAICRDG 184
           +E +++L      + +  V  +++D   A+  F  ++Q  G KHD +   +++  + R  
Sbjct: 293 EEALVNLNCHMDAYQANQVLKQLQDHTVALGFFHWLKQLPGFKHDGYTYTTMVGILGRAK 352

Query: 185 KTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPA 243
           + +   + L ++V    +P   TY  L+  + +   + +A + F +M  + G +PD V  
Sbjct: 353 QFVAINKLLDQMVRDGCQPTVVTYNRLIHSYGRANYLNDAVEVFNQMQ-KAGCEPDRVTY 411

Query: 244 YDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECL-TGQNLRGAEFIWGA 302
               LI +      +   +   +RM   G +P  TF       CL    +L  A+ ++  
Sbjct: 412 --CTLIDIHAKAGFLNFAMEMYQRMQAAGLSPD-TFTYSVMINCLGKAGHLAAADKLFCE 468

Query: 303 MVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGR 362
           M+ + G  P+   YN+MI+L   +     A+KL  +M   G  PD  TY+I+ E L    
Sbjct: 469 MIEQ-GCVPNLVTYNIMIALQAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHSG 527

Query: 363 KLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGN 422
            L EA  +F+EM +   V +       V ++  + +   A ++++ M+         T N
Sbjct: 528 YLDEAEAIFSEMKRKNWVPDEPVYGLLVDLWGKAGNVEKAWEWYQAMLHAGLCPNVPTCN 587

Query: 423 LLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKAR 467
            L++    ++ LP+A    + M   G+  +    + L     +AR
Sbjct: 588 SLLSAFLRVNRLPDAYNLLQSMLNLGLNPSLQTYTLLLSCCTEAR 632


>gi|224100125|ref|XP_002334407.1| predicted protein [Populus trichocarpa]
 gi|222872045|gb|EEF09176.1| predicted protein [Populus trichocarpa]
          Length = 513

 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 84/355 (23%), Positives = 154/355 (43%), Gaps = 24/355 (6%)

Query: 42  LCEIIANTPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSP 101
           L   +  T S +    LD   I +S+  V Q+L+ +       ++FF+W + +   KHS 
Sbjct: 6   LVAYLTKTLSESGTRSLDPDSIPLSESLVLQILRRNSLDSSKKMEFFKWCSVRHIYKHSV 65

Query: 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDV 160
             ++ +   L ++   + + D + SMK + V+    TF  +  +++ + +   A+   D 
Sbjct: 66  STYSQMFSTLCRSGYLEEVPDLLNSMKNDGVVVGSETFKLLLDAFIRSGKFDSALDILDH 125

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDA----WQFLRVVDGRIK-------PDNDTYAI 209
           ME+ G   +    +S++ A+ +  +   A    ++ L   DG  +       P +     
Sbjct: 126 MEELGSNPNPHMYDSIIVALAKKNQVGLALSIMFKLLEASDGNEENAVGVSLPGSVACNA 185

Query: 210 LLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDG-IYETVNSLKRM 268
           LL            K  F ++  +VG++  N   Y+  +     GC G +  ++   K M
Sbjct: 186 LLVALRNGEMKVEFKTVFAKLRGKVGFEL-NTWGYNICIHAF--GCWGDLTTSLRLFKEM 242

Query: 269 MERGCNPG------MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISL 322
            E+    G       T+  L    CL G+ ++ A  ++  +    G  PD   Y ++I  
Sbjct: 243 KEKSLASGSLDPDLCTYNSLIHVLCLAGK-VKDAVIVYEELKVS-GHEPDAFTYRILIQG 300

Query: 323 YCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKN 377
            C S +   + K+  EM YNG  PD   YN L + + K RK+ EA  LF +MV++
Sbjct: 301 CCKSYQMEDSTKIFSEMQYNGFLPDTVVYNSLLDGMFKARKVMEACQLFEKMVQD 355



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 101/218 (46%), Gaps = 14/218 (6%)

Query: 169 DVFALNSLLSAICRDGKTIDA---WQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKK 225
           D+   NSL+  +C  GK  DA   ++ L+V     +PD  TY IL++G  K   + ++ K
Sbjct: 255 DLCTYNSLIHVLCLAGKVKDAVIVYEELKVSGH--EPDAFTYRILIQGCCKSYQMEDSTK 312

Query: 226 TFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFE 285
            F EM    G+ PD V  Y+S L  + K    + E     ++M++ G       + +  +
Sbjct: 313 IFSEMQYN-GFLPDTV-VYNSLLDGMFKA-RKVMEACQLFEKMVQDGVRASCWTYNILID 369

Query: 286 E-CLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGA 344
             C  G+   G     G  + + G   D   Y++++ L C       A+ L++EM   G 
Sbjct: 370 GLCKNGRAEAGYNLFCG--LKKKGQFVDAVTYSIVVLLLCRKGHLEDALHLVEEMEERGF 427

Query: 345 FPDIQTY-NILFEFLVKGRKLWEASGLFNEMVKNENVL 381
             D+ T  ++L  F  +GR  W+ +    + +++ N+L
Sbjct: 428 VVDLITITSLLIAFHKQGR--WDCTERLMKHIRDVNLL 463



 Score = 42.4 bits (98), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 67/325 (20%), Positives = 121/325 (37%), Gaps = 68/325 (20%)

Query: 167 KHDVFALNSLLSAICRDGKTIDAWQFLRVV--DGRIKPDNDTYAILLEGWEKERDVANAK 224
           KH V   + + S +CR G   +    L  +  DG +   ++T+ +LL+ + +     +A 
Sbjct: 62  KHSVSTYSQMFSTLCRSGYLEEVPDLLNSMKNDG-VVVGSETFKLLLDAFIRSGKFDSAL 120

Query: 225 KTFGEMVIEVGWDPDNVPAYDSYLITL----------------LKGCDGIYETVNSLKRM 268
                M  E+G +P N   YDS ++ L                L+  DG  E    +   
Sbjct: 121 DILDHME-ELGSNP-NPHMYDSIIVALAKKNQVGLALSIMFKLLEASDGNEENAVGVSLP 178

Query: 269 MERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNE 328
               CN  +   +        G+     + ++  + G++GF  +T  YN+ I  +    +
Sbjct: 179 GSVACNALLVALR-------NGEMKVEFKTVFAKLRGKVGFELNTWGYNICIHAFGCWGD 231

Query: 329 TGAAMKLLDEM----VYNGAF-PDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNH 383
              +++L  EM    + +G+  PD+ TYN L   L    K+ +A  ++ E+     V  H
Sbjct: 232 LTTSLRLFKEMKEKSLASGSLDPDLCTYNSLIHVLCLAGKVKDAVIVYEEL----KVSGH 287

Query: 384 ENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKG 443
           E             D +                   T  +L+ G C  + + ++ K    
Sbjct: 288 E------------PDAF-------------------TYRILIQGCCKSYQMEDSTKIFSE 316

Query: 444 MAEKGIQVTPFALSKLKQILIKARK 468
           M   G        + L   + KARK
Sbjct: 317 MQYNGFLPDTVVYNSLLDGMFKARK 341


>gi|356510681|ref|XP_003524064.1| PREDICTED: pentatricopeptide repeat-containing protein At5g18390,
           mitochondrial-like [Glycine max]
          Length = 450

 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 76/326 (23%), Positives = 150/326 (46%), Gaps = 11/326 (3%)

Query: 54  VEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGK 113
           +E  L+K  I V+ E V +VL+   ++P  +++FF W+    +   +   +  +V  L +
Sbjct: 55  LERTLNKLRITVTPELVFRVLRACSNNPTESLRFFNWARTHPSYSPTSLEFEQIVTTLAR 114

Query: 114 NCLFDAMWDAIKSMKKENVLSL--ATFASVFSSYVVADRVKDAITTFDVME-QYGCKHDV 170
              + +MW  I+ +   + LSL  +  ASV  +Y     V  ++  F+       C   +
Sbjct: 115 ANTYQSMWALIRQVTLHHRLSLSPSAVASVIEAYGDNRHVDQSVQVFNKSPLLLNCPQTL 174

Query: 171 FALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGE 229
              N+LL ++C +     A+  + R++   ++PD  TYA+L+  W     +  A K F E
Sbjct: 175 PLYNALLRSLCHNKLFHGAYALVRRMLRKGLRPDKTTYAVLVNAWCSNGKLREA-KLFLE 233

Query: 230 MVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKR-MMERGCNPGMTFFKLAFEECL 288
            + E G++P  V   D  +  LL    G  E+   + R M+++G  P +  F  A  E +
Sbjct: 234 EMSEKGFNPP-VRGRDLLVEGLLNA--GYVESAKGMVRNMIKQGSVPDVGTFN-AVVETV 289

Query: 289 TGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDI 348
           + ++++    ++  +   +G  PD + Y +++     S     A +LL+  + +G  P  
Sbjct: 290 SKEDVQFCVGLYHEVCA-LGMAPDVNTYKILVPAVSKSGMVDEAFRLLNNFIEDGHKPFP 348

Query: 349 QTYNILFEFLVKGRKLWEASGLFNEM 374
             Y  + + L +  +  +A   F +M
Sbjct: 349 SLYAPVIKALCRRGQFDDAFCFFGDM 374



 Score = 44.3 bits (103), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 34/148 (22%), Positives = 62/148 (41%), Gaps = 1/148 (0%)

Query: 306 RIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLW 365
           R G RPD   Y ++++ +C + +   A   L+EM   G  P ++  ++L E L+    + 
Sbjct: 202 RKGLRPDKTTYAVLVNAWCSNGKLREAKLFLEEMSEKGFNPPVRGRDLLVEGLLNAGYVE 261

Query: 366 EASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLV 425
            A G+   M+K  +V +     A V      D  +    + +        D++ T  +LV
Sbjct: 262 SAKGMVRNMIKQGSVPDVGTFNAVVETVSKEDVQFCVGLYHEVCALGMAPDVN-TYKILV 320

Query: 426 AGLCDMHMLPEAVKYAKGMAEKGIQVTP 453
             +    M+ EA +      E G +  P
Sbjct: 321 PAVSKSGMVDEAFRLLNNFIEDGHKPFP 348


>gi|147841262|emb|CAN75614.1| hypothetical protein VITISV_022293 [Vitis vinifera]
          Length = 590

 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 90/384 (23%), Positives = 165/384 (42%), Gaps = 31/384 (8%)

Query: 87  FFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLS------------ 134
           FF+W    LN  HS  +   ++  L K+  F    + ++ +   + LS            
Sbjct: 61  FFKWVESNLNHXHSLQSSWTMIHTLAKHKQFKTAQNLLERIAVRDYLSSPSVLNAVVRIH 120

Query: 135 --------LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKT 186
                   + ++  +F  Y  +   +DAI  F+ M  +G K  + A   LL+++ +   T
Sbjct: 121 DDPDSNSQILSWLVIF--YANSRMTQDAIQVFEHMRVHGFKPHLHACTVLLNSLAKARLT 178

Query: 187 IDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYD 245
              W+ + ++V   + P+   + +L+    K  DV  A++   EM  E  +   ++  Y+
Sbjct: 179 NMVWKVYKKMVRVGVVPNIHIFNVLIHACCKSGDVEKAEQLLNEM--ESRFIFPDLFTYN 236

Query: 246 SYLITLLKGCDGIYETVNSLKRMMERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMV 304
           + LI+L       YE +    RM   G +P + T+  L +  C  G+ +R A  ++  + 
Sbjct: 237 T-LISLYCKKGMHYEALGIQDRMERGGVSPDIVTYNSLIYGFCREGR-MREALRLFREIN 294

Query: 305 GRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKL 364
           G     P+   Y  +I  YC  N+   A++L + M   G  P + TYN +   L +  K+
Sbjct: 295 GAT---PNHVTYTTLIDGYCRVNDLEEALRLREVMEVEGLHPGVVTYNSILRKLCEEGKI 351

Query: 365 WEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLL 424
            +A+ L NEM + +   ++  C   +  Y    D   A+K  K M+E        T   L
Sbjct: 352 KDANRLLNEMSERKVEPDNVTCNTLINAYCKIGDMGSAMKVKKKMLEAGLKPDQFTFKAL 411

Query: 425 VAGLCDMHMLPEAVKYAKGMAEKG 448
           + G C +H +  A ++   M + G
Sbjct: 412 IHGFCKLHEVDSAKEFLFEMLDAG 435



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 71/275 (25%), Positives = 114/275 (41%), Gaps = 40/275 (14%)

Query: 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR 194
           L T+ ++ S Y       +A+   D ME+ G   D+   NSL+   CR+G+  +A +  R
Sbjct: 232 LFTYNTLISLYCKKGMHYEALGIQDRMERGGVSPDIVTYNSLIYGFCREGRMREALRLFR 291

Query: 195 VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITL--- 251
            ++G   P++ TY  L++G+ +  D+  A +    M +E G  P  V  Y+S L  L   
Sbjct: 292 EING-ATPNHVTYTTLIDGYCRVNDLEEALRLREVMEVE-GLHP-GVVTYNSILRKLCEE 348

Query: 252 --LKGCDGIYE------------TVNSL-----------------KRMMERGCNPG-MTF 279
             +K  + +              T N+L                 K+M+E G  P   TF
Sbjct: 349 GKIKDANRLLNEMSERKVEPDNVTCNTLINAYCKIGDMGSAMKVKKKMLEAGLKPDQFTF 408

Query: 280 FKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEM 339
             L    C   +     EF++  +    GF P    Y+ ++  Y   +   A ++L DE+
Sbjct: 409 KALIHGFCKLHEVDSAKEFLFEMLDA--GFSPSYSTYSWLVDSYYDQDNKEAVIRLPDEL 466

Query: 340 VYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
              G F DI  Y  L   L K  K+  A  +F  M
Sbjct: 467 SRKGLFVDISVYRALIRRLCKIDKIESAERIFTLM 501


>gi|356555026|ref|XP_003545840.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g38730-like [Glycine max]
          Length = 587

 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 97/419 (23%), Positives = 175/419 (41%), Gaps = 36/419 (8%)

Query: 50  PSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVD 109
            S      + K L+++S      +  +  SH  P   FF+W     +  HS      ++ 
Sbjct: 32  ASALTSSTIHKVLLQLS------LYGYGLSHSFP---FFKWLDSIPHYSHSLQCSWAMIH 82

Query: 110 LLGKNCLFDAMWDAIKSMKKENVLS----LATF----------ASVFS----SYVVADRV 151
           +L ++  F      ++ +  ++ LS    L+T           + V S     Y  +   
Sbjct: 83  ILTEHKHFKTAQHVLEKIAHKDFLSSPSVLSTLVRTHDNQEVNSQVLSWLVIHYAKSKMT 142

Query: 152 KDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAIL 210
           +DAI  F+ M  +  K  + A   LL+++ +DG T   W+ + R+V   + P+   Y  L
Sbjct: 143 QDAIQVFEQMRLHEVKPHLHACTVLLNSLLKDGVTHMVWKIYKRMVQVGVVPNIYIYNCL 202

Query: 211 LEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMME 270
                K  DV  A++   EM  +V     ++  Y++ L++L       YE ++   RM  
Sbjct: 203 FHACSKSGDVERAEQLLNEM--DVKGVLQDIFTYNT-LLSLYCKKGMHYEALSIQNRMER 259

Query: 271 RGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNET 329
            G N  + ++  L +  C  G+ +R A  ++  +       P+   Y  +I  YC +NE 
Sbjct: 260 EGINLDIVSYNSLIYGFCKEGR-MREAMRMFSEIKNAT---PNHVTYTTLIDGYCKTNEL 315

Query: 330 GAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAA 389
             A+K+   M   G +P + TYN +   L +  ++ +A+ L NEM + +   ++  C   
Sbjct: 316 EEALKMCKLMEAKGLYPGVVTYNSILRKLCQDGRIRDANKLLNEMSERKLQADNITCNTL 375

Query: 390 VRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448
           +  Y    D   A+KF   M+E        T   L+ G C  + L  A +    M + G
Sbjct: 376 INAYCKIGDLKSALKFKNKMLEAGLKPDPFTYKALIHGFCKTNELESAKELMFSMLDAG 434



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 66/251 (26%), Positives = 111/251 (44%), Gaps = 19/251 (7%)

Query: 114 NCLFDAMWDAIKSMKKENVLS----------LATFASVFSSYVVADRVKDAITTFDVMEQ 163
           NCLF A   +    + E +L+          + T+ ++ S Y       +A++  + ME+
Sbjct: 200 NCLFHACSKSGDVERAEQLLNEMDVKGVLQDIFTYNTLLSLYCKKGMHYEALSIQNRMER 259

Query: 164 YGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANA 223
            G   D+ + NSL+   C++G+  +A +    +     P++ TY  L++G+ K  ++  A
Sbjct: 260 EGINLDIVSYNSLIYGFCKEGRMREAMRMFSEIKNA-TPNHVTYTTLIDGYCKTNELEEA 318

Query: 224 KKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNS-LKRMMERGCNP-GMTFFK 281
            K    M  + G  P  V  Y+S L  L +  DG     N  L  M ER      +T   
Sbjct: 319 LKMCKLMEAK-GLYP-GVVTYNSILRKLCQ--DGRIRDANKLLNEMSERKLQADNITCNT 374

Query: 282 LAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVY 341
           L    C  G +L+ A      M+   G +PD   Y  +I  +C +NE  +A +L+  M+ 
Sbjct: 375 LINAYCKIG-DLKSALKFKNKML-EAGLKPDPFTYKALIHGFCKTNELESAKELMFSMLD 432

Query: 342 NGAFPDIQTYN 352
            G  P   TY+
Sbjct: 433 AGFTPSYCTYS 443



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 57/256 (22%), Positives = 97/256 (37%), Gaps = 44/256 (17%)

Query: 120 MWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSA 179
           M+  IK+    +V    T+ ++   Y   + +++A+    +ME  G    V   NS+L  
Sbjct: 288 MFSEIKNATPNHV----TYTTLIDGYCKTNELEEALKMCKLMEAKGLYPGVVTYNSILRK 343

Query: 180 ICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDP 238
           +C+DG+  DA + L  +  R ++ DN T   L+  + K  D+ +A K F   ++E G  P
Sbjct: 344 LCQDGRIRDANKLLNEMSERKLQADNITCNTLINAYCKIGDLKSALK-FKNKMLEAGLKP 402

Query: 239 DNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEF 298
           D                                      T+  L    C T +     E 
Sbjct: 403 D------------------------------------PFTYKALIHGFCKTNELESAKEL 426

Query: 299 IWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFL 358
           ++  +    GF P    Y+ ++  Y   +   A + L DE +  G   D+  Y  L    
Sbjct: 427 MFSMLDA--GFTPSYCTYSWIVDGYNKKDNMDAVLALPDEFLSRGICLDVSVYRALIRSS 484

Query: 359 VKGRKLWEASGLFNEM 374
            K  ++  A  LF  M
Sbjct: 485 CKVERIQCAERLFYHM 500


>gi|356528294|ref|XP_003532739.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 594

 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 99/424 (23%), Positives = 182/424 (42%), Gaps = 23/424 (5%)

Query: 50  PSPTVED--VLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLV 107
           P P+V+D  +L   ++R+              H   A+   +     L  +      N+V
Sbjct: 72  PLPSVKDFTLLLGVIVRLK-------------HYTTAISLVKHIFSSLGIEADTITLNIV 118

Query: 108 VDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVMEQYGC 166
           ++ L +  L    +  + +M K  +  ++ T  ++ +   V   V  A+   D ME+   
Sbjct: 119 INCLCRLKLVAFGFSVLGTMFKLGLEPTVMTLTALINGLCVQGNVAQAVGLVDHMEKMRY 178

Query: 167 KHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRI-KPDNDTYAILLEGWEKERDVANAKK 225
             DV+    L++ +C+ G T+ A ++LR ++ R  KP+   Y+ +++G  K+  V+ A  
Sbjct: 179 PLDVYTYGVLINGLCKTGDTLAAVEWLRKMEERNWKPNVVVYSTIMDGLCKDGLVSEALN 238

Query: 226 TFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFE 285
              EM  + G  P N+  Y + LI  L       ET + L  M++ G    +    +  +
Sbjct: 239 LCSEMSGK-GVRP-NLVTY-ACLIQGLCNFGRWKETGSLLDEMIKMGMRLDLQTLNILVD 295

Query: 286 E-CLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGA 344
             C  G+ ++ A+ + G M+   G  PD   YN +I +YC  N+   AM++   MV  G 
Sbjct: 296 AFCKEGKVMQ-AKSVIGFMI-LTGEGPDVFTYNSLIHIYCLQNKMNEAMRVFHLMVSRGC 353

Query: 345 FPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIK 404
            PDI  +  L     K + + +   L  EM K   V +       +  +  +  P  A +
Sbjct: 354 LPDIVVFTSLIHGWCKDKNINKVMHLLEEMAKMGFVPDVVTWTTLIGGFCQAGRPLAAKE 413

Query: 405 FWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILI 464
            +  M +       +T  +++ GLC  ++L EAV  A+ M +  + +     S L   + 
Sbjct: 414 LFLNMHKYGQVPNLQTCAVILDGLCKGNLLSEAVSLAEAMEKSNLDLNIVIYSILLDGMC 473

Query: 465 KARK 468
            A K
Sbjct: 474 SAGK 477



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 86/387 (22%), Positives = 153/387 (39%), Gaps = 41/387 (10%)

Query: 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKEN-VLSLATFASVFSSYVVADRVKDAITTFDV 160
           Y + ++++ L K     A  + ++ M++ N   ++  ++++         V +A+     
Sbjct: 183 YTYGVLINGLCKTGDTLAAVEWLRKMEERNWKPNVVVYSTIMDGLCKDGLVSEALNLCSE 242

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERD 219
           M   G + ++     L+  +C  G+  +    L  ++   ++ D  T  IL++ + KE  
Sbjct: 243 MSGKGVRPNLVTYACLIQGLCNFGRWKETGSLLDEMIKMGMRLDLQTLNILVDAFCKEGK 302

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTF 279
           V  AK   G M++  G  PD V  Y+S LI +    + + E +     M+ RGC P +  
Sbjct: 303 VMQAKSVIGFMIL-TGEGPD-VFTYNS-LIHIYCLQNKMNEAMRVFHLMVSRGCLPDIVV 359

Query: 280 FKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEM 339
           F          +N+     +   M  ++GF PD   +  +I  +C +    AA +L   M
Sbjct: 360 FTSLIHGWCKDKNINKVMHLLEEM-AKMGFVPDVVTWTTLIGGFCQAGRPLAAKELFLNM 418

Query: 340 VYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLN-------------HENC 386
              G  P++QT  ++ + L KG  L EA  L   M K+   LN                 
Sbjct: 419 HKYGQVPNLQTCAVILDGLCKGNLLSEAVSLAEAMEKSNLDLNIVIYSILLDGMCSAGKL 478

Query: 387 RAAVRVYMDSDDPYVAIKFWKYMI----------------------ENHCSDLSETGNLL 424
            AA  ++       + I  + Y I                      EN C   + T N+ 
Sbjct: 479 NAAWELFSSLPGKGLQINVYTYTIMIKGLCKQGSLDKAEDLLINMEENGCLPDNCTYNVF 538

Query: 425 VAGLCDMHMLPEAVKYAKGMAEKGIQV 451
           V GL     +  ++KY   M +KG  V
Sbjct: 539 VQGLLTKKEIARSIKYLTIMRDKGFSV 565


>gi|449439615|ref|XP_004137581.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580-like [Cucumis sativus]
          Length = 857

 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 83/355 (23%), Positives = 150/355 (42%), Gaps = 51/355 (14%)

Query: 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDV 160
           + +N+ +  L +    D     ++S+  E +   + ++ ++   +    ++ +A      
Sbjct: 252 FTFNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHK 311

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIK---PDNDTYAILLEGWEKE 217
           M   G + + F  N++++  C+ G   +A + LR  D   K   PD  TY+ L+ G   +
Sbjct: 312 MVNSGVEPNEFTYNTIINGFCKAGMMQNADKILR--DAMFKGFIPDEFTYSSLINGLCND 369

Query: 218 RDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDG---IYETVNSLKRMMERGCN 274
            D+  A   F E  +E G+   ++  Y+    TL+KG      + + +  +K MME GC+
Sbjct: 370 GDMNRAMAVFYE-AMEKGF-KHSIILYN----TLVKGLSKQGLVLQALQLMKDMMEHGCS 423

Query: 275 PGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMK 334
           P +  + L          L  A  I    + + G  PD   +N +I  YC       A++
Sbjct: 424 PDIWTYNLVVNGLCKMGCLSDANGILNDAIAK-GCIPDIFTFNTLIDGYCKQRNMDKAIE 482

Query: 335 LLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYM 394
           +LD M+ +G  PD+ TYN L   L K RKL             +NV++            
Sbjct: 483 ILDTMLSHGITPDVITYNTLLNGLCKARKL-------------DNVVDT----------- 518

Query: 395 DSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
                      +K M+E  C+    T N+L+   C    + EA++  K M  +G+
Sbjct: 519 -----------FKAMLEKGCTPNIITYNILIESFCKDRKVSEAMELFKEMKTRGL 562



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 82/288 (28%), Positives = 123/288 (42%), Gaps = 19/288 (6%)

Query: 100 SPYAW--NLVVDLLGK-NCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAIT 156
           SP  W  NLVV+ L K  CL DA      ++ K  +  + TF ++   Y     +  AI 
Sbjct: 423 SPDIWTYNLVVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIE 482

Query: 157 TFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWE 215
             D M  +G   DV   N+LL+ +C+  K  +    F  +++    P+  TY IL+E + 
Sbjct: 483 ILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFC 542

Query: 216 KERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC------DGIYETVNSLKRMM 269
           K+R V+ A + F EM    G  PD V      L TL+ G       D  YE   ++++  
Sbjct: 543 KDRKVSEAMELFKEMKTR-GLTPDIVT-----LCTLICGLCSNGELDKAYELFVTIEK-- 594

Query: 270 ERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNET 329
           E   +     F +         N+  AE ++  M G     PD + Y +MI  YC +   
Sbjct: 595 EYKFSYSTAIFNIMINAFCEKLNVSMAEKLFHKMGGS-DCAPDNYTYRVMIDSYCKTGNI 653

Query: 330 GAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKN 377
             A   L E +  G  P   T   +   L    +L EA  + N MV+N
Sbjct: 654 DLAHTFLLENISKGLVPSFTTCGKVLNCLCVTHRLSEAVVIINLMVQN 701



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 88/373 (23%), Positives = 156/373 (41%), Gaps = 11/373 (2%)

Query: 113 KNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVF 171
           +NC  +A +     M K+ +   + TF  +         V+++   F  + + G   ++F
Sbjct: 194 ENCQIEA-YHLFDEMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLF 252

Query: 172 ALNSLLSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEM 230
             N  +  +CR G   +A + L  +V   + PD  +Y  L+ G+ K   +  A+    +M
Sbjct: 253 TFNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKM 312

Query: 231 VIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKR-MMERGCNPG-MTFFKLAFEECL 288
           V   G +P+    Y++ +    K   G+ +  + + R  M +G  P   T+  L    C 
Sbjct: 313 V-NSGVEPNEF-TYNTIINGFCKA--GMMQNADKILRDAMFKGFIPDEFTYSSLINGLCN 368

Query: 289 TGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDI 348
            G   R     + AM    GF+    +YN ++           A++L+ +M+ +G  PDI
Sbjct: 369 DGDMNRAMAVFYEAM--EKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDI 426

Query: 349 QTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKY 408
            TYN++   L K   L +A+G+ N+ +    + +       +  Y    +   AI+    
Sbjct: 427 WTYNLVVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDT 486

Query: 409 MIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARK 468
           M+ +  +    T N L+ GLC    L   V   K M EKG        + L +   K RK
Sbjct: 487 MLSHGITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRK 546

Query: 469 EAVYEELLKKCKA 481
            +   EL K+ K 
Sbjct: 547 VSEAMELFKEMKT 559



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 102/486 (20%), Positives = 189/486 (38%), Gaps = 78/486 (16%)

Query: 70  VEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKK 129
           V  V+++  + P  A+K F     +   KH+   +  +++ LG +  F+AM D +  M+K
Sbjct: 10  VAAVIRYQ-NDPLNALKMFNQVKTEDGFKHTLETYKCMIEKLGLHGKFEAMEDVLAEMRK 68

Query: 130 --ENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTI 187
             ++ +    +  +   Y    +V++A+  F+ M+ Y C+  V + N++++ +   G   
Sbjct: 69  NVDSKMLEGVYIGIMRDYGRKGKVQEAVNVFERMDFYDCEPSVQSYNAIMNILVEYGYFS 128

Query: 188 DAWQ-FLRVVDGRIKPDNDTYAI-----------------------------------LL 211
            A + ++R+ D  I PD  T+ I                                   ++
Sbjct: 129 QAHKVYMRMKDIGIYPDVYTHTIRMKSFCITGRPTAALRLLNNMPGQGCEFNAVSYCAVI 188

Query: 212 EGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMER 271
            G+ KE     A   F EM ++ G  PD +  ++  +  L K    + E+     ++M+R
Sbjct: 189 SGFYKENCQIEAYHLFDEM-LKQGICPD-ILTFNKLIHVLCKK-GNVQESEKLFSKVMKR 245

Query: 272 GCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGA 331
           G  P +  F +  +       +  A  +  ++V   G  PD   YN +I  +C  ++   
Sbjct: 246 GVCPNLFTFNIFIQGLCRKGAIDEAARLLESIVSE-GLTPDVISYNTLICGFCKHSKLVE 304

Query: 332 AMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEAS-----GLFNEMVKNE-------- 378
           A   L +MV +G  P+  TYN +     K   +  A       +F   + +E        
Sbjct: 305 AECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLIN 364

Query: 379 NVLNHENCRAAVRVYMDSDDP----------------------YVAIKFWKYMIENHCSD 416
            + N  +   A+ V+ ++ +                         A++  K M+E+ CS 
Sbjct: 365 GLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSP 424

Query: 417 LSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELL 476
              T NL+V GLC M  L +A         KG     F  + L     K R      E+L
Sbjct: 425 DIWTYNLVVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEIL 484

Query: 477 KKCKAH 482
               +H
Sbjct: 485 DTMLSH 490



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 87/366 (23%), Positives = 154/366 (42%), Gaps = 14/366 (3%)

Query: 119 AMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLS 178
           AM    ++M+K    S+  + ++         V  A+     M ++GC  D++  N +++
Sbjct: 375 AMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVN 434

Query: 179 AICRDGKTIDAWQFLR--VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGW 236
            +C+ G   DA   L   +  G I PD  T+  L++G+ K+R++  A +    M+   G 
Sbjct: 435 GLCKMGCLSDANGILNDAIAKGCI-PDIFTFNTLIDGYCKQRNMDKAIEILDTMLSH-GI 492

Query: 237 DPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGA 296
            PD V  Y++ L  L K    +   V++ K M+E+GC P +  + +  E     + +  A
Sbjct: 493 TPD-VITYNTLLNGLCKA-RKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEA 550

Query: 297 EFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFP-DIQTYNILF 355
             ++  M  R G  PD      +I   C + E   A +L   +     F      +NI+ 
Sbjct: 551 MELFKEMKTR-GLTPDIVTLCTLICGLCSNGELDKAYELFVTIEKEYKFSYSTAIFNIMI 609

Query: 356 EFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCS 415
               +   +  A  LF++M  ++   ++   R  +  Y  + +  +A  F    I     
Sbjct: 610 NAFCEKLNVSMAEKLFHKMGGSDCAPDNYTYRVMIDSYCKTGNIDLAHTFLLENISKGLV 669

Query: 416 DLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI---QVTPFALSKLKQILIKARKEAVY 472
               T   ++  LC  H L EAV     M + GI   +V     +  K++   A  + V 
Sbjct: 670 PSFTTCGKVLNCLCVTHRLSEAVVIINLMVQNGIVPEEVNSIFEADKKEV---AAPKIVV 726

Query: 473 EELLKK 478
           E LLKK
Sbjct: 727 EYLLKK 732


>gi|302762244|ref|XP_002964544.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
 gi|300168273|gb|EFJ34877.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
          Length = 528

 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 91/368 (24%), Positives = 156/368 (42%), Gaps = 31/368 (8%)

Query: 95  LNDKHSPYAWNLVVDLLGKNCLFDAMWDA---IKSMKKENVLSLA-TFASVFSSYVVADR 150
           ++ +H P    L V ++   CL D + DA   ++ M    + + A T++++       +R
Sbjct: 66  VSARHVPDNTTLTV-VVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGLCKCER 124

Query: 151 VKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAI 209
           + +A+   + M + GC   V   NS+++  CR  +  +A  F+ ++V     PD  TY  
Sbjct: 125 LDEAVALVETMAERGCAPTVVTYNSIITGFCRARRVDEAHGFMEQMVAEGCHPDIITYTA 184

Query: 210 LLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMM 269
           L+ G+ K RDV    +  GE V   G+ PD V  Y + +  L K    + + V+  + M 
Sbjct: 185 LIGGFCKSRDVGRGLELLGE-VTRRGFTPDIV-TYSTVIDGLCKA-GRLRDAVDIFEEM- 240

Query: 270 ERGCNP-GMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNE 328
              C P  +T+  L    C  G ++  A  + G MV      PD   Y  ++S +C    
Sbjct: 241 --SCAPTAITYNSLIGGYCRAG-DMDEAIRLLGKMVDD-KCAPDVVTYTTLMSAFCKMGR 296

Query: 329 TGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRA 388
              A +L  +MV N   PD+ T+  L + L    ++ +A  L  E+ +         C  
Sbjct: 297 LDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRR-------GCPP 349

Query: 389 AVRVYMDSDDPYVAIKFWKYMIENHCSDLSETG--------NLLVAGLCDMHMLPEAVKY 440
            +  Y    D Y      +   E   +D    G        N+LVAG C      +A++Y
Sbjct: 350 TIYTYNCVVDGYCKANQVRKA-EELVADFRSRGFVPNTVTYNILVAGCCRAGRTDQALQY 408

Query: 441 AKGMAEKG 448
              +  +G
Sbjct: 409 LDQLNSEG 416



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 78/312 (25%), Positives = 133/312 (42%), Gaps = 23/312 (7%)

Query: 141 VFSSYVVADRVKDAITTFDVMEQYGCKH--DVFALNSLLSAICRDGKTIDAWQFLR-VVD 197
           V      A R++ A+  +  M      H  D      L+  + +  +  DA Q L+ +V 
Sbjct: 11  VIGGLCRAGRLRHALGVYRQMND---AHPPDFLTYTKLVHGLSKARRLRDAVQVLQEMVS 67

Query: 198 GRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDG 257
            R  PDN T  ++++       V +A++   EM +  G   + +    S L+  L  C+ 
Sbjct: 68  ARHVPDNTTLTVVVQSLCLGDRVDDARELVEEM-LHRGMAANAITY--SALVDGLCKCER 124

Query: 258 IYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYN 317
           + E V  ++ M ERGC P +  +          + +  A      MV   G  PD   Y 
Sbjct: 125 LDEAVALVETMAERGCAPTVVTYNSIITGFCRARRVDEAHGFMEQMVAE-GCHPDIITYT 183

Query: 318 MMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKN 377
            +I  +C S + G  ++LL E+   G  PDI TY+ + + L K  +L +A  +F EM   
Sbjct: 184 ALIGGFCKSRDVGRGLELLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEMSCA 243

Query: 378 ENVLNHEN-----CRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMH 432
              + + +     CRA      D D+   AI+    M+++ C+    T   L++  C M 
Sbjct: 244 PTAITYNSLIGGYCRAG-----DMDE---AIRLLGKMVDDKCAPDVVTYTTLMSAFCKMG 295

Query: 433 MLPEAVKYAKGM 444
            L +A +  + M
Sbjct: 296 RLDDAYELFQQM 307



 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 71/297 (23%), Positives = 119/297 (40%), Gaps = 45/297 (15%)

Query: 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL- 193
           + T+++V      A R++DA+   D+ E+  C       NSL+   CR G   +A + L 
Sbjct: 214 IVTYSTVIDGLCKAGRLRDAV---DIFEEMSCAPTAITYNSLIGGYCRAGDMDEAIRLLG 270

Query: 194 RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLK 253
           ++VD +  PD  TY  L+  + K   + +A + F +MV      PD V    + L+  L 
Sbjct: 271 KMVDDKCAPDVVTYTTLMSAFCKMGRLDDAYELFQQMVAN-KLSPDVVTF--TSLVDGLC 327

Query: 254 GCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDT 313
           G   + + +  L+ +  RGC P +  +    +       +R AE +      R GF P+T
Sbjct: 328 GEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKANQVRKAEELVADFRSR-GFVPNT 386

Query: 314 HMYNMMISLYCYSNETGAAMKLLD------------------------------------ 337
             YN++++  C +  T  A++ LD                                    
Sbjct: 387 VTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAMYAIILDALCRDGRTDDAVQFY 446

Query: 338 -EMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVY 393
            EM+  G  P   T+  +   L K  +  +A  L  EM+K  +      C A V  Y
Sbjct: 447 EEMIQRGYVPAAATFATVVFALCKAHQPQQAHELLEEMIKYGHTPGPGTCDAVVSAY 503



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 71/159 (44%), Gaps = 3/159 (1%)

Query: 311 PDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFP-DIQTYNILFEFLVKGRKLWEASG 369
           P T ++N++I   C +     A+ +  +M  N A P D  TY  L   L K R+L +A  
Sbjct: 3   PGTLLHNVVIGGLCRAGRLRHALGVYRQM--NDAHPPDFLTYTKLVHGLSKARRLRDAVQ 60

Query: 370 LFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLC 429
           +  EMV   +V ++      V+     D    A +  + M+    +  + T + LV GLC
Sbjct: 61  VLQEMVSARHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGLC 120

Query: 430 DMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARK 468
               L EAV   + MAE+G   T    + +     +AR+
Sbjct: 121 KCERLDEAVALVETMAERGCAPTVVTYNSIITGFCRARR 159



 Score = 43.1 bits (100), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 45/205 (21%), Positives = 74/205 (36%), Gaps = 2/205 (0%)

Query: 274 NPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAM 333
           NPG     +          LR A  ++  M       PD   Y  ++     +     A+
Sbjct: 2   NPGTLLHNVVIGGLCRAGRLRHALGVYRQM--NDAHPPDFLTYTKLVHGLSKARRLRDAV 59

Query: 334 KLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVY 393
           ++L EMV     PD  T  ++ + L  G ++ +A  L  EM+      N     A V   
Sbjct: 60  QVLQEMVSARHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGL 119

Query: 394 MDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTP 453
              +    A+   + M E  C+    T N ++ G C    + EA  + + M  +G     
Sbjct: 120 CKCERLDEAVALVETMAERGCAPTVVTYNSIITGFCRARRVDEAHGFMEQMVAEGCHPDI 179

Query: 454 FALSKLKQILIKARKEAVYEELLKK 478
              + L     K+R      ELL +
Sbjct: 180 ITYTALIGGFCKSRDVGRGLELLGE 204


>gi|115489794|ref|NP_001067384.1| Os12g0638900 [Oryza sativa Japonica Group]
 gi|77556813|gb|ABA99609.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113649891|dbj|BAF30403.1| Os12g0638900 [Oryza sativa Japonica Group]
 gi|125580213|gb|EAZ21359.1| hypothetical protein OsJ_37016 [Oryza sativa Japonica Group]
          Length = 859

 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 80/327 (24%), Positives = 146/327 (44%), Gaps = 10/327 (3%)

Query: 52  PTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLL 111
           P  E VLD    ++      QVLK  + H   A+ FF+W   Q   KH  +++  ++ +L
Sbjct: 318 PMTEHVLDNLHCKIDAFQANQVLKLLHDHT-IALGFFQWLKRQPGFKHDGHSYTTMIGIL 376

Query: 112 GKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDV 170
           G+   F  M   +  M   +   ++ T+  +  +Y  A+ +++A+  F+ M++ G + D 
Sbjct: 377 GQARQFGTMRKLLDEMNSVHCKPTVVTYNRIIHAYGRANYLREAVKVFEEMQKAGYEPDR 436

Query: 171 FALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGE 229
               +L+    + G    A   + R+ +  + PD  TY+ ++    K   +A A K F E
Sbjct: 437 VTYCTLIDIHAKGGYLEFAMDLYTRMQEVGLSPDTFTYSAMVNCLGKGGHLAAAYKLFCE 496

Query: 230 MVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSL-KRMMERGCNPGMTFFKLAFEECL 288
           MV E G  P N+  Y+  ++  L+     YE V  L K M   G  P    + +  E   
Sbjct: 497 MV-ENGCTP-NLVTYN--IMIALQAKARNYENVVKLYKDMQVAGFRPDKITYSIVMEVLG 552

Query: 289 TGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDI 348
              +L  AE ++  M  R  + PD  +Y +++ L+  +     A+     M+ +G  P++
Sbjct: 553 HCGHLDEAEAVFIEM--RHDWAPDEPVYGLLVDLWGKAGNVDKALGWYHAMLQDGLQPNV 610

Query: 349 QTYNILFEFLVKGRKLWEASGLFNEMV 375
            T N L    +K  +  +A  +   M+
Sbjct: 611 PTCNSLLSAFLKINRFQDAYSVLQNML 637



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 113/289 (39%), Gaps = 14/289 (4%)

Query: 89  RWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSM---KKENVLSLATFASVFSSY 145
           RW   Q  +  +P  +       G      A+   IKS     + N+ SL +  SV   Y
Sbjct: 255 RWDEVQTQNLSAPAMYT------GSGHKSQALAGTIKSHGGGPQSNLRSLKSLRSVEQYY 308

Query: 146 VVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDND 205
               ++K    T  V++   CK D F  N +L  +      +  +Q+L+   G  K D  
Sbjct: 309 HTLQQMKWGPMTEHVLDNLHCKIDAFQANQVLKLLHDHTIALGFFQWLKRQPG-FKHDGH 367

Query: 206 TYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSL 265
           +Y  ++    + R     +K   EM   V   P  V  Y+  +I      + + E V   
Sbjct: 368 SYTTMIGILGQARQFGTMRKLLDEMN-SVHCKP-TVVTYNR-IIHAYGRANYLREAVKVF 424

Query: 266 KRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCY 325
           + M + G  P    +    +    G  L  A  ++  M   +G  PDT  Y+ M++    
Sbjct: 425 EEMQKAGYEPDRVTYCTLIDIHAKGGYLEFAMDLYTRMQ-EVGLSPDTFTYSAMVNCLGK 483

Query: 326 SNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
                AA KL  EMV NG  P++ TYNI+     K R       L+ +M
Sbjct: 484 GGHLAAAYKLFCEMVENGCTPNLVTYNIMIALQAKARNYENVVKLYKDM 532



 Score = 44.3 bits (103), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 33/69 (47%)

Query: 308 GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEA 367
           GF+ D H Y  MI +   + + G   KLLDEM      P + TYN +     +   L EA
Sbjct: 361 GFKHDGHSYTTMIGILGQARQFGTMRKLLDEMNSVHCKPTVVTYNRIIHAYGRANYLREA 420

Query: 368 SGLFNEMVK 376
             +F EM K
Sbjct: 421 VKVFEEMQK 429



 Score = 42.0 bits (97), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 66/170 (38%), Gaps = 4/170 (2%)

Query: 310 RPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASG 369
           +P    YN +I  Y  +N    A+K+ +EM   G  PD  TY  L +   KG  L  A  
Sbjct: 398 KPTVVTYNRIIHAYGRANYLREAVKVFEEMQKAGYEPDRVTYCTLIDIHAKGGYLEFAMD 457

Query: 370 LFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLC 429
           L+  M +     +     A V           A K +  M+EN C+    T N+++A   
Sbjct: 458 LYTRMQEVGLSPDTFTYSAMVNCLGKGGHLAAAYKLFCEMVENGCTPNLVTYNIMIALQA 517

Query: 430 DMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKA----RKEAVYEEL 475
                   VK  K M   G +      S + ++L         EAV+ E+
Sbjct: 518 KARNYENVVKLYKDMQVAGFRPDKITYSIVMEVLGHCGHLDEAEAVFIEM 567


>gi|38567720|emb|CAE76009.1| B1358B12.18 [Oryza sativa Japonica Group]
 gi|90265197|emb|CAH67636.1| B0812A04.6 [Oryza sativa Indica Group]
          Length = 609

 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 78/317 (24%), Positives = 127/317 (40%), Gaps = 11/317 (3%)

Query: 138 FASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL--RV 195
           F  +    V    +  A   FD M+  G +  V + N+++S +CR G  +D  + L  R+
Sbjct: 243 FNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCRAGD-LDGAETLHRRM 301

Query: 196 VDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
            +  + PD  TY  L++G  +   + +A+  F +M    G  P+ V     + I +   C
Sbjct: 302 SEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGR-GMKPNAV----VFTILIDAHC 356

Query: 256 D-GIYETVNSLKR-MMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDT 313
             G  ET+  L R M ERG  P    +          ++L+ A  I   M    G RPDT
Sbjct: 357 KKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRS-AGLRPDT 415

Query: 314 HMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNE 373
             Y  +I  YC   E   AM++   MV  G   D  TY  L   L K  +  +A  +  E
Sbjct: 416 VTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAERVLGE 475

Query: 374 MVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHM 433
           M++     ++      +  +    D    ++  K M          T N+++ G C +  
Sbjct: 476 MMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNVIMNGFCKLGQ 535

Query: 434 LPEAVKYAKGMAEKGIQ 450
           +  A      M   G+ 
Sbjct: 536 MKNADMLLNAMINIGVS 552



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 105/247 (42%), Gaps = 19/247 (7%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           T+ ++        R++DA   F+ M   G K +      L+ A C+ G      +  R +
Sbjct: 312 TYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILIDAHCKKGDAETMLELHREM 371

Query: 197 DGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
             R ++PD  TY  ++ G  + RD+ +A     EM    G  PD V    +Y  TL+ G 
Sbjct: 372 RERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMR-SAGLRPDTV----TY-TTLIDG- 424

Query: 256 DGIYETVNSLKRMMERGCN---PGMTFFKLAFEECLTGQNLRG----AEFIWGAMVGRIG 308
              Y     L   ME   N    G+   ++ +   ++G +  G    AE + G M+   G
Sbjct: 425 ---YCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAERVLGEMM-EAG 480

Query: 309 FRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEAS 368
             PD   Y M+I  +C   +    ++LL EM   G  P + TYN++     K  ++  A 
Sbjct: 481 LEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNVIMNGFCKLGQMKNAD 540

Query: 369 GLFNEMV 375
            L N M+
Sbjct: 541 MLLNAMI 547


>gi|18071423|gb|AAL58282.1|AC068923_24 putative membrane-associated protein [Oryza sativa Japonica Group]
          Length = 952

 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 80/302 (26%), Positives = 135/302 (44%), Gaps = 35/302 (11%)

Query: 81  PGPAVKFFRWSAYQLNDKHSP--YAWNLVVDLLGKNCLFDAMWDAIKS-MKKENVLSLAT 137
           P  AV  +   A    D+ +P    + +++    +    D  + A+ + +KK   +   T
Sbjct: 65  PAAAVSRYNRMARAGADEVTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVEAIT 124

Query: 138 FASVFSSYVVADRVKDAI-TTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           F  +        R  DA+      M + GC  +VF+ N+LL+ +C + ++ +A + L ++
Sbjct: 125 FTPLLKGLCADKRTSDAMDIVLRRMTELGCIPNVFSYNNLLNGLCDENRSQEALELLHMM 184

Query: 197 ----DGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
                G   PD  +Y  ++ G+ KE D   A  T+ EM ++ G  PD V  Y S +  L 
Sbjct: 185 ADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEM-LDRGILPD-VVTYSSIIAALC 242

Query: 253 KGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD 312
           KG            + M++            +  C  G+ +  +E ++  MV RIG +PD
Sbjct: 243 KG------------QAMDK-----------PWSHCKEGRVIE-SEKLFDLMV-RIGVKPD 277

Query: 313 THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFN 372
              Y+ +I  YC + +   AMKLL  MV  G  P+  TY+ L     K  ++ +A  LF 
Sbjct: 278 IITYSTLIDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFK 337

Query: 373 EM 374
           EM
Sbjct: 338 EM 339



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 58/265 (21%), Positives = 116/265 (43%), Gaps = 23/265 (8%)

Query: 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICR------------ 182
           + ++ +V + +        A +T+  M   G   DV   +S+++A+C+            
Sbjct: 196 VVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKGQAMDKPWSHCK 255

Query: 183 DGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNV 241
           +G+ I++ + F  +V   +KPD  TY+ L++G+     +  A K    MV  VG  P+ V
Sbjct: 256 EGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEAMKLLSGMV-SVGLKPNTV 314

Query: 242 PAYDSYLITLLKGCDGIYETVNSL---KRMMERGCNPGMTFFKLAFEECLTGQNLRGAEF 298
             Y     TL+ G   I    ++L   K M   G +P +  + +  +     +    A+ 
Sbjct: 315 -TYS----TLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKE 369

Query: 299 IWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFL 358
           ++   +   G + +   YN+++   C +  T  A+++   +       + +T+NI+ + L
Sbjct: 370 LY-VRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDAL 428

Query: 359 VKGRKLWEASGLFNEMVKNENVLNH 383
           +K  +  EA  LF     N  V N+
Sbjct: 429 LKVGRNDEAKDLFVAFSSNGLVPNY 453



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 57/241 (23%), Positives = 98/241 (40%), Gaps = 17/241 (7%)

Query: 144 SYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGRIKP 202
           S+    RV ++   FD+M + G K D+   ++L+   C  GK  +A + L  +V   +KP
Sbjct: 252 SHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEAMKLLSGMVSVGLKP 311

Query: 203 DNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETV 262
           +  TY+ L+ G+ K   + +A   F EM    G  PD +    +Y I L     G+++T 
Sbjct: 312 NTVTYSTLINGYCKISRMEDALVLFKEME-SSGVSPDII----TYNIIL----QGLFQTR 362

Query: 263 NSLK------RMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMY 316
            +        R+ E G    ++ + +     L    L          +  +  + +   +
Sbjct: 363 RTAAAKELYVRITESGTQIELSTYNIILHG-LCKNKLTDDALQMFQNLCLMDLKLEARTF 421

Query: 317 NMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK 376
           N+MI           A  L      NG  P+  TY ++ E ++    L E   LF  M  
Sbjct: 422 NIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMED 481

Query: 377 N 377
           N
Sbjct: 482 N 482


>gi|255764587|gb|ACU33853.1| PPR1 protein [Capsicum annuum]
          Length = 577

 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 71/293 (24%), Positives = 132/293 (45%), Gaps = 8/293 (2%)

Query: 85  VKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFS 143
           VK        LN   + + +++++D L K    +   + ++ M ++ V   + T++++  
Sbjct: 257 VKTLLSEMVNLNINPNVHTFSILIDGLCKEGKVEDADEVMRHMIEKGVEPDIITYSAIMD 316

Query: 144 SYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKP 202
            Y +  +V  A   F+V+   G K ++F+ + L++  C+      A Q F  +    +KP
Sbjct: 317 GYCLRGQVDRARRVFNVLRDKGIKPNIFSYSILINGYCKKKNLAKAMQLFGEISQKGLKP 376

Query: 203 DNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETV 262
           D  TY+ +L G  +   + +AKK F EM + VG  PD +  + + L    K   G+ E  
Sbjct: 377 DTVTYSTILHGLIEVGRIGDAKKIFDEM-LRVGPTPD-ICLHSTLLFGYFKY--GLVEEA 432

Query: 263 NSLKRMMERGC-NPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMIS 321
             L   +ER   +  ++F+ +          +R A  I+  +   IG  PD   YN+MI+
Sbjct: 433 MLLFSKLERNREDTNISFYTVVINGLCKNDRVREAHAIFEKL-PSIGLIPDVRTYNVMIT 491

Query: 322 LYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
            +C          +L +M  NG   +  TYN++ +   +  K+ E      EM
Sbjct: 492 GFCREGLFDEVKGILRKMEDNGCPANNITYNVIMQGFFRSNKISEIVSFMKEM 544



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 78/366 (21%), Positives = 162/366 (44%), Gaps = 24/366 (6%)

Query: 94  QLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASVFSSYVVADRVK 152
           Q N K     +++V+D L K+   DA  + +  MK++N+  ++ T+ S+        + +
Sbjct: 196 QGNTKPDVRTYSIVIDALCKDINLDAAINLLNEMKQKNIPPNIFTYNSLIDGLCKLGQWE 255

Query: 153 DAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYAILL 211
              T    M       +V   + L+  +C++GK  DA + +R +++  ++PD  TY+ ++
Sbjct: 256 KVKTLLSEMVNLNINPNVHTFSILIDGLCKEGKVEDADEVMRHMIEKGVEPDIITYSAIM 315

Query: 212 EGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMER 271
           +G+     V  A++ F  ++ + G  P N+ +Y S LI        + + +     + ++
Sbjct: 316 DGYCLRGQVDRARRVF-NVLRDKGIKP-NIFSY-SILINGYCKKKNLAKAMQLFGEISQK 372

Query: 272 GCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGA 331
           G  P    +       +    +  A+ I+  M+ R+G  PD  +++ ++  Y        
Sbjct: 373 GLKPDTVTYSTILHGLIEVGRIGDAKKIFDEML-RVGPTPDICLHSTLLFGYFKYGLVEE 431

Query: 332 AMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM--------VKNENVLNH 383
           AM L  ++  N    +I  Y ++   L K  ++ EA  +F ++        V+  NV+  
Sbjct: 432 AMLLFSKLERNREDTNISFYTVVINGLCKNDRVREAHAIFEKLPSIGLIPDVRTYNVMIT 491

Query: 384 ENCRAAVRVYMDSDDPYVAIK-FWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAK 442
             CR  +         +  +K   + M +N C   + T N+++ G    + + E V + K
Sbjct: 492 GFCREGL---------FDEVKGILRKMEDNGCPANNITYNVIMQGFFRSNKISEIVSFMK 542

Query: 443 GMAEKG 448
            MA +G
Sbjct: 543 EMAGRG 548



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 68/302 (22%), Positives = 134/302 (44%), Gaps = 48/302 (15%)

Query: 114 NCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFD-VMEQYGCKHDVFA 172
           +C F  +   +K+    NV+   TF ++       ++V DA+  F  ++ +  C+ +   
Sbjct: 114 DCAFSVLPIYLKTGIPFNVV---TFNTLLGGLFAENKVTDAVVLFKKLVREKICEPNEVM 170

Query: 173 LNSLLSAICRDGKTIDAWQFLRVVD-GRIKPDNDTYAILLEGWEKERDVANAKKTFGEMV 231
             ++++ + + G T      LR+++ G  KPD  TY+I+++   K+ ++  A     EM 
Sbjct: 171 YGTVMNGLSKRGHTEKTLSLLRIMEQGNTKPDVRTYSIVIDALCKDINLDAAINLLNEM- 229

Query: 232 IEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSL-------------------------- 265
            +    P N+  Y+S +  L K   G +E V +L                          
Sbjct: 230 -KQKNIPPNIFTYNSLIDGLCKL--GQWEKVKTLLSEMVNLNINPNVHTFSILIDGLCKE 286

Query: 266 ----------KRMMERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTH 314
                     + M+E+G  P + T+  +    CL GQ  R A  ++  +  + G +P+  
Sbjct: 287 GKVEDADEVMRHMIEKGVEPDIITYSAIMDGYCLRGQVDR-ARRVFNVLRDK-GIKPNIF 344

Query: 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
            Y+++I+ YC       AM+L  E+   G  PD  TY+ +   L++  ++ +A  +F+EM
Sbjct: 345 SYSILINGYCKKKNLAKAMQLFGEISQKGLKPDTVTYSTILHGLIEVGRIGDAKKIFDEM 404

Query: 375 VK 376
           ++
Sbjct: 405 LR 406



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 75/324 (23%), Positives = 137/324 (42%), Gaps = 21/324 (6%)

Query: 154 AITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-----VVDGRIKPDNDTYA 208
           AI   + M+Q     ++F  NSL+  +C+ G+    W+ ++     +V+  I P+  T++
Sbjct: 222 AINLLNEMKQKNIPPNIFTYNSLIDGLCKLGQ----WEKVKTLLSEMVNLNINPNVHTFS 277

Query: 209 ILLEGWEKERDVANAKKTFGEMVIEVGWDPDNV---PAYDSYLITLLKG-CDGIYETVNS 264
           IL++G  KE  V +A +    M IE G +PD +      D Y    L+G  D      N 
Sbjct: 278 ILIDGLCKEGKVEDADEVMRHM-IEKGVEPDIITYSAIMDGYC---LRGQVDRARRVFNV 333

Query: 265 LKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYC 324
           L+   ++G  P +  + +        +NL  A  ++G  + + G +PDT  Y+ ++    
Sbjct: 334 LR---DKGIKPNIFSYSILINGYCKKKNLAKAMQLFGE-ISQKGLKPDTVTYSTILHGLI 389

Query: 325 YSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHE 384
                G A K+ DEM+  G  PDI  ++ L     K   + EA  LF+++ +N    N  
Sbjct: 390 EVGRIGDAKKIFDEMLRVGPTPDICLHSTLLFGYFKYGLVEEAMLLFSKLERNREDTNIS 449

Query: 385 NCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGM 444
                +     +D    A   ++ +          T N+++ G C   +  E     + M
Sbjct: 450 FYTVVINGLCKNDRVREAHAIFEKLPSIGLIPDVRTYNVMITGFCREGLFDEVKGILRKM 509

Query: 445 AEKGIQVTPFALSKLKQILIKARK 468
            + G        + + Q   ++ K
Sbjct: 510 EDNGCPANNITYNVIMQGFFRSNK 533



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 80/347 (23%), Positives = 152/347 (43%), Gaps = 33/347 (9%)

Query: 94  QLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENV-----LSLATFASVFSSYVVA 148
           Q N   + + +N ++D L K       W+ +K++  E V      ++ TF+ +       
Sbjct: 231 QKNIPPNIFTYNSLIDGLCK----LGQWEKVKTLLSEMVNLNINPNVHTFSILIDGLCKE 286

Query: 149 DRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV-DGRIKPDNDTY 207
            +V+DA      M + G + D+   ++++   C  G+   A +   V+ D  IKP+  +Y
Sbjct: 287 GKVEDADEVMRHMIEKGVEPDIITYSAIMDGYCLRGQVDRARRVFNVLRDKGIKPNIFSY 346

Query: 208 AILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKR 267
           +IL+ G+ K++++A A + FGE + + G  PD V  Y + L  L++    I +       
Sbjct: 347 SILINGYCKKKNLAKAMQLFGE-ISQKGLKPDTV-TYSTILHGLIE-VGRIGDAKKIFDE 403

Query: 268 MMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGF-------RPDTHM--YNM 318
           M+  G  P +         CL    L G  F +G +   +         R DT++  Y +
Sbjct: 404 MLRVGPTPDI---------CLHSTLLFGY-FKYGLVEEAMLLFSKLERNREDTNISFYTV 453

Query: 319 MISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNE 378
           +I+  C ++    A  + +++   G  PD++TYN++     +     E  G+  +M  N 
Sbjct: 454 VINGLCKNDRVREAHAIFEKLPSIGLIPDVRTYNVMITGFCREGLFDEVKGILRKMEDNG 513

Query: 379 NVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCS-DLSETGNLL 424
              N+      ++ +  S+     + F K M     S D + TG L+
Sbjct: 514 CPANNITYNVIMQGFFRSNKISEIVSFMKEMAGRGFSFDATTTGVLI 560



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 83/383 (21%), Positives = 156/383 (40%), Gaps = 36/383 (9%)

Query: 114 NCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFAL 173
           +CL DA+    + ++ + + S+  F+ +F + +        ++ F  M   G       L
Sbjct: 41  SCLDDAVSLFHRMVRMKPLPSVIDFSKLFKTMINMKHYSAVVSLFREMRILGIPISDSIL 100

Query: 174 NSLLSAICRDGKTIDAWQFLRVVDGRIKPDN-DTYAILLEGWEKERDVANAKKTFGEMVI 232
           N + ++ C   +   A+  L +      P N  T+  LL G   E  V +A   F ++V 
Sbjct: 101 NIVTNSYCLRHRIDCAFSVLPIYLKTGIPFNVVTFNTLLGGLFAENKVTDAVVLFKKLVR 160

Query: 233 EVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERG-CNPGMTFFKLAFEECLTGQ 291
           E   +P+ V  Y + +  L K   G  E   SL R+ME+G   P +  + +  +      
Sbjct: 161 EKICEPNEV-MYGTVMNGLSK--RGHTEKTLSLLRIMEQGNTKPDVRTYSIVIDALCKDI 217

Query: 292 NLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTY 351
           NL  A  +   M  +    P+   YN +I   C   +      LL EMV     P++ T+
Sbjct: 218 NLDAAINLLNEMKQK-NIPPNIFTYNSLIDGLCKLGQWEKVKTLLSEMVNLNINPNVHTF 276

Query: 352 NILFEFLVKGRKLWEASGLFNEMVKN---------ENVLNHENCRAAV----RVYMDSDD 398
           +IL + L K  K+ +A  +   M++            +++    R  V    RV+    D
Sbjct: 277 SILIDGLCKEGKVEDADEVMRHMIEKGVEPDIITYSAIMDGYCLRGQVDRARRVFNVLRD 336

Query: 399 PYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSK 458
             +    + Y I             L+ G C    L +A++    +++KG++      S 
Sbjct: 337 KGIKPNIFSYSI-------------LINGYCKKKNLAKAMQLFGEISQKGLKPDTVTYST 383

Query: 459 LKQILIKARK----EAVYEELLK 477
           +   LI+  +    + +++E+L+
Sbjct: 384 ILHGLIEVGRIGDAKKIFDEMLR 406


>gi|356554658|ref|XP_003545661.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Glycine max]
          Length = 675

 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 104/429 (24%), Positives = 175/429 (40%), Gaps = 88/429 (20%)

Query: 72  QVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMW---DAIKSMK 128
           +VL      P  A++FFRW+  Q   K S   + +++D+L +N L  + +   + + S+K
Sbjct: 52  RVLNTVRHRPAVALRFFRWAERQTGFKRSELTYAVILDILARNGLMRSAYCVMEKVVSVK 111

Query: 129 KENVLS---------------------LATFASVFSSYVVAD-----------RVKD--- 153
            EN +                      L  F  + S  ++ D           R +D   
Sbjct: 112 MENGVVDVLILDLLLWIYAKKSMLEKCLLVFYKMVSKGMLPDLKNCNRVLRLLRDRDSSI 171

Query: 154 --AITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAIL 210
             A   ++VM + G +  V   N++L + C+ GK  +A Q  L++      P++ TY +L
Sbjct: 172 DVAREVYNVMVECGIRPTVVTYNTMLDSFCKQGKVQEALQLLLQMQKMGCLPNDVTYNVL 231

Query: 211 LEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG-CD-GIYETVNSL-KR 267
           + G     ++  AK+   EM + +G +  +   YD     L++G C+ G  +  + L + 
Sbjct: 232 VNGLSHSGELEQAKELIQEM-LRLGLEV-SAYTYDP----LIRGYCEKGQLDEASRLGEE 285

Query: 268 MMERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYS 326
           M+ RG  P + T+  + +  C  G+ +  A  +   MV +    PD   YN +I  Y   
Sbjct: 286 MLSRGAVPTLVTYNTIMYGLCKWGR-VSDARKLLDVMVNK-NLMPDLVSYNTLIYGYTRL 343

Query: 327 NETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENC 386
              G A  L  E+ + G  P + TYN L + L +   L  A  L +EM+K+         
Sbjct: 344 GNIGEAFLLFAELRFRGLVPSVVTYNTLIDGLCRMGDLDVAMRLKDEMIKH--------- 394

Query: 387 RAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAE 446
                      DP V                  T  +LV G C +  LP A +    M  
Sbjct: 395 ---------GPDPDVF-----------------TFTILVRGFCKLGNLPMAKELFDEMLN 428

Query: 447 KGIQVTPFA 455
           +G+Q   FA
Sbjct: 429 RGLQPDRFA 437



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 93/396 (23%), Positives = 171/396 (43%), Gaps = 45/396 (11%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASVFSSYVVADRVKDAITTFDVM 161
            +N++V+ L  +   +   + I+ M +  + +S  T+  +   Y    ++ +A    + M
Sbjct: 227 TYNVLVNGLSHSGELEQAKELIQEMLRLGLEVSAYTYDPLIRGYCEKGQLDEASRLGEEM 286

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRV-VDGRIKPDNDTYAILLEGWEKERDV 220
              G    +   N+++  +C+ G+  DA + L V V+  + PD  +Y  L+ G+ +  ++
Sbjct: 287 LSRGAVPTLVTYNTIMYGLCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNI 346

Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLK-RMMERGCNPGM-T 278
             A   F E+    G  P +V  Y++ +  L +  D   +    LK  M++ G +P + T
Sbjct: 347 GEAFLLFAELRFR-GLVP-SVVTYNTLIDGLCRMGD--LDVAMRLKDEMIKHGPDPDVFT 402

Query: 279 FFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDE 338
           F  L    C  G NL  A+ ++  M+ R G +PD   Y   I       +   A  + +E
Sbjct: 403 FTILVRGFCKLG-NLPMAKELFDEMLNR-GLQPDRFAYITRIVGELKLGDPSKAFGMQEE 460

Query: 339 MVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNH-------------EN 385
           M+  G  PD+ TYN+  + L K   L EAS L  +M+ N  V +H              +
Sbjct: 461 MLARGFPPDLITYNVFIDGLHKLGNLKEASELVKKMLYNGLVPDHVTYTSIIHAHLMAGH 520

Query: 386 CRAAVRVYMD--SDDPYVAIKFWKYMIEN------------HCSDLSETG--------NL 423
            R A  V+++  S   + ++  +  +I +            H  ++ E G        N 
Sbjct: 521 LRKARAVFLEMLSKGIFPSVVTYTVLIHSYAVRGRLKLAILHFFEMHEKGVHPNVITYNA 580

Query: 424 LVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKL 459
           L+ GLC +  + +A K+   M  KGI    +  + L
Sbjct: 581 LINGLCKVRKMDQAYKFFTEMQAKGISPNKYTYTIL 616



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 87/348 (25%), Positives = 143/348 (41%), Gaps = 17/348 (4%)

Query: 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR 194
           L ++ ++   Y     + +A   F  +   G    V   N+L+  +CR G   D    +R
Sbjct: 330 LVSYNTLIYGYTRLGNIGEAFLLFAELRFRGLVPSVVTYNTLIDGLCRMG---DLDVAMR 386

Query: 195 VVDGRIK----PDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLIT 250
           + D  IK    PD  T+ IL+ G+ K  ++  AK+ F EM +  G  PD   AY + ++ 
Sbjct: 387 LKDEMIKHGPDPDVFTFTILVRGFCKLGNLPMAKELFDEM-LNRGLQPDRF-AYITRIVG 444

Query: 251 LLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFR 310
            LK  D   +     + M+ RG  P +  + +  +      NL+ A  +   M+   G  
Sbjct: 445 ELKLGDP-SKAFGMQEEMLARGFPPDLITYNVFIDGLHKLGNLKEASELVKKMLYN-GLV 502

Query: 311 PDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFE-FLVKGRKLWEASG 369
           PD   Y  +I  +  +     A  +  EM+  G FP + TY +L   + V+GR       
Sbjct: 503 PDHVTYTSIIHAHLMAGHLRKARAVFLEMLSKGIFPSVVTYTVLIHSYAVRGRLKLAILH 562

Query: 370 LF--NEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAG 427
            F  +E   + NV+ +      +      D  Y   KF+  M     S    T  +L+  
Sbjct: 563 FFEMHEKGVHPNVITYNALINGLCKVRKMDQAY---KFFTEMQAKGISPNKYTYTILINE 619

Query: 428 LCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEEL 475
            C++    EA++  K M ++ IQ      S L + L K  K  V   L
Sbjct: 620 NCNLGHWQEALRLYKDMLDREIQPDSCTHSALLKHLNKDYKSHVVRHL 667



 Score = 46.2 bits (108), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 1/79 (1%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           S+ T+  +  SY V  R+K AI  F  M + G   +V   N+L++ +C+  K   A++F 
Sbjct: 539 SVVTYTVLIHSYAVRGRLKLAILHFFEMHEKGVHPNVITYNALINGLCKVRKMDQAYKFF 598

Query: 194 RVVDGR-IKPDNDTYAILL 211
             +  + I P+  TY IL+
Sbjct: 599 TEMQAKGISPNKYTYTILI 617


>gi|297839599|ref|XP_002887681.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297333522|gb|EFH63940.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 459

 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 83/312 (26%), Positives = 130/312 (41%), Gaps = 58/312 (18%)

Query: 84  AVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKK----ENVLSLATFA 139
           A++FF W        H+      +  LL K   F  +WD ++ + +    +NV++ A+  
Sbjct: 110 ALEFFFWIEIHFGFGHNEITCRDMACLLAKGNDFKGLWDFLRQVSRRENGKNVVTTASIT 169

Query: 140 SVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL---RVV 196
            +         VK+A+ TF  M++Y CK DV+A N++++A+CR G    A   L   ++ 
Sbjct: 170 CLMKCLGEEGFVKEALATFYRMKEYHCKPDVYAYNTIINALCRVGNFKKARFLLDQMQLP 229

Query: 197 DGRIKPDNDTYAILLEGWEK-----------ERDVANAKKTFGEMVIEVGWDPDNVPAYD 245
             R  PD  TY IL+  + +            R +  A + F EM+   G+ PD V  Y+
Sbjct: 230 GFRYPPDTYTYTILISSYCRYGMQTGCRKAIRRRMWEANRMFREMLFR-GFVPD-VVTYN 287

Query: 246 SYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVG 305
                L+ GC       N + R +E             FE+  T                
Sbjct: 288 C----LIDGCC----KTNRIGRALE------------LFEDMKTK--------------- 312

Query: 306 RIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNG-AFPDIQTYNILFEFLVKGRKL 364
             G  P+   YN  I  Y  +NE   A++++  M   G   P   TY  L   LV+ R+ 
Sbjct: 313 --GCVPNQVTYNSFIRYYSVTNEIEGAIEMMRTMKKMGHGVPGSSTYTPLIHALVETRRA 370

Query: 365 WEASGLFNEMVK 376
            EA  L  EMV+
Sbjct: 371 AEARDLLVEMVE 382



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 61/219 (27%), Positives = 92/219 (42%), Gaps = 19/219 (8%)

Query: 249 ITLLKGCDG----IYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMV 304
           IT L  C G    + E + +  RM E  C P +  +           N + A F+   M 
Sbjct: 168 ITCLMKCLGEEGFVKEALATFYRMKEYHCKPDVYAYNTIINALCRVGNFKKARFLLDQM- 226

Query: 305 GRIGFR--PDTHMYNMMISLYC-YSNETGA----------AMKLLDEMVYNGAFPDIQTY 351
              GFR  PDT+ Y ++IS YC Y  +TG           A ++  EM++ G  PD+ TY
Sbjct: 227 QLPGFRYPPDTYTYTILISSYCRYGMQTGCRKAIRRRMWEANRMFREMLFRGFVPDVVTY 286

Query: 352 NILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIE 411
           N L +   K  ++  A  LF +M     V N     + +R Y  +++   AI+  + M +
Sbjct: 287 NCLIDGCCKTNRIGRALELFEDMKTKGCVPNQVTYNSFIRYYSVTNEIEGAIEMMRTMKK 346

Query: 412 -NHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
             H    S T   L+  L +     EA      M E G+
Sbjct: 347 MGHGVPGSSTYTPLIHALVETRRAAEARDLLVEMVEAGL 385


>gi|255551759|ref|XP_002516925.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223544013|gb|EEF45539.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 901

 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 82/322 (25%), Positives = 134/322 (41%), Gaps = 46/322 (14%)

Query: 100 SPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFD 159
           S  A+N ++  LGK           + MKK+   +L+T+  +      A  V+ A    D
Sbjct: 372 SVIAYNCILTCLGKKGRLGEALRTFEEMKKDAAPNLSTYNVLIDMLCKAGEVEAAFKVRD 431

Query: 160 VMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRI-KPDNDTYAILLEGWEKER 218
            M++ G   +V  +N ++  +C+  K  +A      ++ +I  PD  T+  L++G  K+ 
Sbjct: 432 AMKEAGLFPNVMTVNIMIDRLCKAKKLDEACSIFEGMNHKICSPDEVTFCSLIDGLGKQG 491

Query: 219 DVANAKKTFGEMVIEVGWDPDNVP---AYDSYLITLLKGCDGIYETVNSLKRMMERGCNP 275
            V +A + + +M+     D D +P    Y S + +  K C    +     K M+ RGC+P
Sbjct: 492 RVDDAYRLYEQML-----DSDKIPNAVVYTSLIKSFFK-CGRKEDGHKIFKEMIHRGCSP 545

Query: 276 GMTFFKLAFEECL-----TG------QNLRGAEFIWGAMVGRI----------------- 307
            +     A+ +C+     TG      + ++   FI   M   I                 
Sbjct: 546 DLRLLN-AYMDCVFKAGETGKGRALFEEIKSRGFIPDVMSYSILIHGLVKAGFARETYEL 604

Query: 308 -------GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVK 360
                  G   DTH YN  I  +C S +   A +LL+EM   G  P + TY  + + L K
Sbjct: 605 FYAMKEQGCVLDTHAYNTFIDGFCKSGKVNKAYQLLEEMKTKGRQPTVVTYGSVIDGLAK 664

Query: 361 GRKLWEASGLFNEMVKNENVLN 382
             +L EA  LF E   N   LN
Sbjct: 665 IDRLDEAYMLFEEAKSNGLELN 686



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 69/257 (26%), Positives = 112/257 (43%), Gaps = 17/257 (6%)

Query: 133 LSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQF 192
           +S+  F +V   +    R+  A++  D M+      D+   N  +    + GK   AW+F
Sbjct: 231 VSVHLFTTVIRVFAREGRLDAALSLLDEMKSNCLHADIVLYNVCIDCFGKAGKVDMAWKF 290

Query: 193 LRVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVP-AYDSYLIT 250
              +    + PD+ TY  ++    K   +  A + F +M         NVP AY    + 
Sbjct: 291 FHEIKSHGLLPDDVTYTSMIGVLCKGNRLDEAVEIFEQM-----EQNRNVPCAYAYNTMI 345

Query: 251 LLKGCDGIYETVNSL-KRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGF 309
           +  G  G ++   SL +R   RGC P +  +      CL G+  R  E +      +   
Sbjct: 346 MGYGSAGKFDEAYSLLERQKARGCIPSVIAYNCILT-CL-GKKGRLGEALRTFEEMKKDA 403

Query: 310 RPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASG 369
            P+   YN++I + C + E  AA K+ D M   G FP++ T NI+ + L K +KL EA  
Sbjct: 404 APNLSTYNVLIDMLCKAGEVEAAFKVRDAMKEAGLFPNVMTVNIMIDRLCKAKKLDEACS 463

Query: 370 LFNEMVKNENVLNHENC 386
           +F  M       NH+ C
Sbjct: 464 IFEGM-------NHKIC 473



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 63/264 (23%), Positives = 109/264 (41%), Gaps = 9/264 (3%)

Query: 119 AMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLS 178
           A+++ IKS  +  +  + +++ +    V A   ++    F  M++ GC  D  A N+ + 
Sbjct: 568 ALFEEIKS--RGFIPDVMSYSILIHGLVKAGFARETYELFYAMKEQGCVLDTHAYNTFID 625

Query: 179 AICRDGKTIDAWQFLRVVD--GRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGW 236
             C+ GK   A+Q L  +   GR +P   TY  +++G  K   +  A   F E   +   
Sbjct: 626 GFCKSGKVNKAYQLLEEMKTKGR-QPTVVTYGSVIDGLAKIDRLDEAYMLFEEA--KSNG 682

Query: 237 DPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGA 296
              NV  Y S LI        I E    ++ +M++G  P +  +    +  +  + +  A
Sbjct: 683 LELNVVIYSS-LIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEA 741

Query: 297 EFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFE 356
              +  M    G  P+   Y+++I+  C   +   A     EM   G  P+  TY  +  
Sbjct: 742 LVCFQNMKNLKG-TPNHITYSILINGLCRVRKFNKAFVFWQEMQKQGLKPNTITYTTMIA 800

Query: 357 FLVKGRKLWEASGLFNEMVKNENV 380
            L K   + EAS LF     N  V
Sbjct: 801 GLAKAGNIAEASSLFERFKANGGV 824



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 70/333 (21%), Positives = 129/333 (38%), Gaps = 6/333 (1%)

Query: 107 VVDLLGKNCLFDAMWDAIKSM-KKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYG 165
           ++D LGK    D  +   + M   + + +   + S+  S+    R +D    F  M   G
Sbjct: 483 LIDGLGKQGRVDDAYRLYEQMLDSDKIPNAVVYTSLIKSFFKCGRKEDGHKIFKEMIHRG 542

Query: 166 CKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVANAK 224
           C  D+  LN+ +  + + G+T         +  R   PD  +Y+IL+ G  K        
Sbjct: 543 CSPDLRLLNAYMDCVFKAGETGKGRALFEEIKSRGFIPDVMSYSILIHGLVKAGFARETY 602

Query: 225 KTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAF 284
           + F  M  E G   D   AY++++    K    + +    L+ M  +G  P +  +    
Sbjct: 603 ELFYAMK-EQGCVLDT-HAYNTFIDGFCKS-GKVNKAYQLLEEMKTKGRQPTVVTYGSVI 659

Query: 285 EECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGA 344
           +       L  A  ++       G   +  +Y+ +I  +        A  +++E++  G 
Sbjct: 660 DGLAKIDRLDEAYMLFEEAKSN-GLELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGL 718

Query: 345 FPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIK 404
            P++ T+N L + LVK  ++ EA   F  M   +   NH      +           A  
Sbjct: 719 TPNVYTWNCLLDALVKAEEINEALVCFQNMKNLKGTPNHITYSILINGLCRVRKFNKAFV 778

Query: 405 FWKYMIENHCSDLSETGNLLVAGLCDMHMLPEA 437
           FW+ M +      + T   ++AGL     + EA
Sbjct: 779 FWQEMQKQGLKPNTITYTTMIAGLAKAGNIAEA 811



 Score = 44.7 bits (104), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 58/286 (20%), Positives = 117/286 (40%), Gaps = 15/286 (5%)

Query: 102 YAWNLVVDLLGKNCLFDAMWDAIKSMK-KENVLSLATFASVFSSYVVADRVKDAITTFDV 160
           +A+N  +D   K+   +  +  ++ MK K    ++ T+ SV       DR+ +A   F+ 
Sbjct: 618 HAYNTFIDGFCKSGKVNKAYQLLEEMKTKGRQPTVVTYGSVIDGLAKIDRLDEAYMLFEE 677

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYAILLEGWEKERD 219
            +  G + +V   +SL+    + G+  +A+  +  ++   + P+  T+  LL+   K  +
Sbjct: 678 AKSNGLELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEE 737

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSL---KRMMERGCNPG 276
           +  A   F  M      +    P + +Y I L+ G   + +   +    + M ++G  P 
Sbjct: 738 INEALVCFQNMK-----NLKGTPNHITYSI-LINGLCRVRKFNKAFVFWQEMQKQGLKPN 791

Query: 277 MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLL 336
              +           N+  A  ++       G  PD+  YN +I    YS     A K+ 
Sbjct: 792 TITYTTMIAGLAKAGNIAEASSLFERFKANGGV-PDSASYNAIIEGLSYSRRAMEAYKIF 850

Query: 337 DEMVYNGAFPDIQTYNILFEFLVKGRKLWEAS---GLFNEMVKNEN 379
           +E    G     +T   L + L K   L +A+    +  E+ K+++
Sbjct: 851 EETRMKGCNIHTKTCIALLDALQKDECLEQAAIVGAVLREIAKSQH 896



 Score = 38.9 bits (89), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 28/109 (25%), Positives = 42/109 (38%), Gaps = 35/109 (32%)

Query: 307 IGFRPDTHMYNMMISLYCYSNETGAAMKLLDEM----------VYN-------------- 342
           +G+    H++  +I ++       AA+ LLDEM          +YN              
Sbjct: 227 LGYEVSVHLFTTVIRVFAREGRLDAALSLLDEMKSNCLHADIVLYNVCIDCFGKAGKVDM 286

Query: 343 -----------GAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENV 380
                      G  PD  TY  +   L KG +L EA  +F +M +N NV
Sbjct: 287 AWKFFHEIKSHGLLPDDVTYTSMIGVLCKGNRLDEAVEIFEQMEQNRNV 335


>gi|224126843|ref|XP_002319940.1| predicted protein [Populus trichocarpa]
 gi|222858316|gb|EEE95863.1| predicted protein [Populus trichocarpa]
          Length = 555

 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 84/337 (24%), Positives = 145/337 (43%), Gaps = 12/337 (3%)

Query: 117 FDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSL 176
           F  +   IK   + NV+   TF+++ + + +  ++  AI  FDVM   G K +V + + +
Sbjct: 146 FSVLGKIIKLGLEPNVI---TFSTLINGFCIEGKIGRAIELFDVMVARGYKPNVHSYSII 202

Query: 177 LSAICRDGKTIDAWQFL---RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIE 233
           +  +CR GKT +  + L   +VV    +PD   Y  +++   K+R V  A   F +M   
Sbjct: 203 IKGLCRVGKTTEVIKLLEHMKVVG--CEPDVVIYNTIVDRLCKDRLVNEAVHIFCKMK-G 259

Query: 234 VGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNL 293
            G  P  V  Y S LI  L+      E    L  M      P +  F +  +       +
Sbjct: 260 TGILP-TVVTYTS-LIHGLRNLGRWKEAFGLLNEMKGGNIMPDLVAFSVLIDIMCKEGEV 317

Query: 294 RGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNI 353
             A  I   M   +G  PD   YN +++ YC   E   A K+ + M+  G  PD+ +++I
Sbjct: 318 SEARVILKTMT-EMGVEPDVATYNTLMNGYCLRMEVVEARKVFEVMISKGRMPDVFSFSI 376

Query: 354 LFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENH 413
           L     K +++ EA  LF+EM     + +  +    +     +  P  A + +K M  N 
Sbjct: 377 LVNGYCKAKRIDEAKQLFDEMTHRGLIPDTVSYNTLISGLCQARRPLEAEELFKDMHSNG 436

Query: 414 CSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQ 450
                 T ++L+  L     L +A+   + M   G++
Sbjct: 437 YPPNLVTYSILLDCLSKQGYLDQAMGLFRAMENSGLK 473



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 91/373 (24%), Positives = 155/373 (41%), Gaps = 15/373 (4%)

Query: 113 KNCLFDAMWDAIKS---MKKENVL-SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKH 168
           KN  F  + DA+ +   M   N L S+  F  +FS+ V     K  ++    ME  G  H
Sbjct: 65  KNRTFRNINDALSAFNHMVNTNPLPSIVKFGELFSALVRMKHYKTVVSLSKQMEMAGISH 124

Query: 169 DVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTF 227
           DV +L  L++  CR       +  L +++   ++P+  T++ L+ G+  E  +  A + F
Sbjct: 125 DVLSLTILINCFCRLCHVDYGFSVLGKIIKLGLEPNVITFSTLINGFCIEGKIGRAIELF 184

Query: 228 GEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEEC 287
             MV   G+ P NV +Y S +I  L       E +  L+ M   GC P +  +    +  
Sbjct: 185 DVMVAR-GYKP-NVHSY-SIIIKGLCRVGKTTEVIKLLEHMKVVGCEPDVVIYNTIVDRL 241

Query: 288 LTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPD 347
              + +  A  I+  M G  G  P    Y  +I           A  LL+EM      PD
Sbjct: 242 CKDRLVNEAVHIFCKMKGT-GILPTVVTYTSLIHGLRNLGRWKEAFGLLNEMKGGNIMPD 300

Query: 348 IQTYNILFEFLVKGRKLWEASGLF---NEMVKNENVLNHENCRAAVRVYMDSDDPYVAIK 404
           +  +++L + + K  ++ EA  +     EM    +V  +        + M+  +   A K
Sbjct: 301 LVAFSVLIDIMCKEGEVSEARVILKTMTEMGVEPDVATYNTLMNGYCLRMEVVE---ARK 357

Query: 405 FWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILI 464
            ++ MI         + ++LV G C    + EA +    M  +G+     + + L   L 
Sbjct: 358 VFEVMISKGRMPDVFSFSILVNGYCKAKRIDEAKQLFDEMTHRGLIPDTVSYNTLISGLC 417

Query: 465 KARKEAVYEELLK 477
           +AR+    EEL K
Sbjct: 418 QARRPLEAEELFK 430



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 70/262 (26%), Positives = 118/262 (45%), Gaps = 10/262 (3%)

Query: 121 WDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSA 179
           +  +  MK  N++  L  F+ +         V +A      M + G + DV   N+L++ 
Sbjct: 286 FGLLNEMKGGNIMPDLVAFSVLIDIMCKEGEVSEARVILKTMTEMGVEPDVATYNTLMNG 345

Query: 180 ICRDGKTIDAWQFLRVV--DGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWD 237
            C   + ++A +   V+   GR+ PD  +++IL+ G+ K + +  AK+ F EM    G  
Sbjct: 346 YCLRMEVVEARKVFEVMISKGRM-PDVFSFSILVNGYCKAKRIDEAKQLFDEMT-HRGLI 403

Query: 238 PDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQN-LRGA 296
           PD V +Y++ LI+ L       E     K M   G  P +  + +  + CL+ Q  L  A
Sbjct: 404 PDTV-SYNT-LISGLCQARRPLEAEELFKDMHSNGYPPNLVTYSILLD-CLSKQGYLDQA 460

Query: 297 EFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFE 356
             ++ AM    G +PD   YN+MI   C   +   A +L  E+   G  P+        +
Sbjct: 461 MGLFRAMENS-GLKPDLVTYNIMIDGMCKYGKFKDARELFAELSVKGLQPNNWVCTPTID 519

Query: 357 FLVKGRKLWEASGLFNEMVKNE 378
            + KG  L EA   F +M K++
Sbjct: 520 GVCKGGLLDEAHKAFRQMEKDD 541


>gi|297806115|ref|XP_002870941.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316778|gb|EFH47200.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 719

 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 82/309 (26%), Positives = 125/309 (40%), Gaps = 5/309 (1%)

Query: 156 TTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGW 214
           T    +++ G   D+   N+L+SA    G   +A++ +  +  +   P   TY  ++ G 
Sbjct: 246 TFLSEVQEKGVYPDIVTYNTLISAYSSQGLMEEAFELMHAMPSKGFSPGVYTYNTVINGL 305

Query: 215 EKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCN 274
            K      AK+ F EM +  G  PD+   Y S L+   K  D + ET N    M  R   
Sbjct: 306 CKHGKYERAKEVFAEM-LRSGLSPDST-TYRSLLMEACKKGDAV-ETENIFSDMRSRDVV 362

Query: 275 PGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMK 334
           P +  F           NL  A   + + V   G  PD  +Y ++I  YC       AM 
Sbjct: 363 PDLVCFSSMMSLFTRSGNLDKALMYFNS-VKEAGLIPDNVIYTILIQGYCRKGMISEAMN 421

Query: 335 LLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYM 394
           L +EM+  G   D+ TYN +   L K + L EA  LFNEM +     +       +  + 
Sbjct: 422 LRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERGLFPDSYTLTILIDGHC 481

Query: 395 DSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPF 454
              +   A++ +K M E        T N L+ G   +  +  A +    M  K I  TP 
Sbjct: 482 KLGNLQNAMELFKKMKEKRIKLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPI 541

Query: 455 ALSKLKQIL 463
           + S L   L
Sbjct: 542 SFSILVNAL 550



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 76/326 (23%), Positives = 131/326 (40%), Gaps = 31/326 (9%)

Query: 138 FASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVD 197
           +  +   Y     + +A+   + M Q GC  DV   N++L  +C+     +A +    + 
Sbjct: 403 YTILIQGYCRKGMISEAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMT 462

Query: 198 GR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD 256
            R + PD+ T  IL++G  K  ++ NA + F +M  +      +V  Y+    TLL G  
Sbjct: 463 ERGLFPDSYTLTILIDGHCKLGNLQNAMELFKKM--KEKRIKLDVVTYN----TLLDGF- 515

Query: 257 GIYETVNSLKR----MMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD 312
           G    +++ K     M+ +   P    F +      +  +L  A  +W  M+ +   +P 
Sbjct: 516 GKVGDIDTAKEIWADMVSKEILPTPISFSILVNALCSKGHLSEAFRVWDEMISK-SIKPT 574

Query: 313 THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFN 372
             + N MI  YC S         L++M+  G  PD  +YN L    VK   + +A GL  
Sbjct: 575 VMICNSMIKGYCRSGNASDGEIFLEKMISEGFVPDCISYNTLIYGFVKEENMSKAFGLVK 634

Query: 373 EMVKNE----------NVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGN 422
           +M + +          N + H  CR         +    A    + MIE   +    T  
Sbjct: 635 KMEEKQGGLVPDVFTYNSILHGFCR--------ENQMKEAEAVLRKMIERGVNPDRSTYT 686

Query: 423 LLVAGLCDMHMLPEAVKYAKGMAEKG 448
            L+ G      L EA ++   M ++G
Sbjct: 687 SLINGFVSQDNLTEAFRFHDEMLQRG 712



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 52/212 (24%), Positives = 93/212 (43%), Gaps = 4/212 (1%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVM 161
            +N ++D  GK    D   +    M  + +L +  +F+ + ++      + +A   +D M
Sbjct: 507 TYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISFSILVNALCSKGHLSEAFRVWDEM 566

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERDV 220
                K  V   NS++   CR G   D   FL +++     PD  +Y  L+ G+ KE ++
Sbjct: 567 ISKSIKPTVMICNSMIKGYCRSGNASDGEIFLEKMISEGFVPDCISYNTLIYGFVKEENM 626

Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFF 280
           + A     +M  + G    +V  Y+S L    +  + + E    L++M+ERG NP  + +
Sbjct: 627 SKAFGLVKKMEEKQGGLVPDVFTYNSILHGFCRE-NQMKEAEAVLRKMIERGVNPDRSTY 685

Query: 281 KLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD 312
                  ++  NL  A      M+ R GF PD
Sbjct: 686 TSLINGFVSQDNLTEAFRFHDEMLQR-GFSPD 716


>gi|4836917|gb|AAD30619.1|AC007153_11 similar to indole-3-acetate beta-glucosyltransferase [Arabidopsis
            thaliana]
          Length = 1184

 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 89/375 (23%), Positives = 155/375 (41%), Gaps = 10/375 (2%)

Query: 98   KHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAIT 156
            K + Y +  ++ LL + C      +A   M ++ +L     + ++   +     ++ A  
Sbjct: 756  KPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASK 815

Query: 157  TFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWE 215
             F  M       DV    +++S  C+ G  ++A + F  +    ++PD+ T+  L+ G+ 
Sbjct: 816  FFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYC 875

Query: 216  KERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSL-KRMMERGCN 274
            K   + +A +    M I+ G  P NV  Y + +  L K  +G  ++ N L   M + G  
Sbjct: 876  KAGHMKDAFRVHNHM-IQAGCSP-NVVTYTTLIDGLCK--EGDLDSANELLHEMWKIGLQ 931

Query: 275  PGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAM 333
            P + T+  +    C +G N+  A  + G      G   DT  Y  ++  YC S E   A 
Sbjct: 932  PNIFTYNSIVNGLCKSG-NIEEAVKLVGEFEAA-GLNADTVTYTTLMDAYCKSGEMDKAQ 989

Query: 334  KLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVY 393
            ++L EM+  G  P I T+N+L         L +   L N M+      N     + V+ Y
Sbjct: 990  EILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQY 1049

Query: 394  MDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTP 453
               ++   A   +K M         +T   LV G C    + EA    + M  KG  V+ 
Sbjct: 1050 CIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSV 1109

Query: 454  FALSKLKQILIKARK 468
               S L +  +K +K
Sbjct: 1110 STYSVLIKGFLKRKK 1124



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 73/300 (24%), Positives = 121/300 (40%), Gaps = 42/300 (14%)

Query: 109  DLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKH 168
            D++    LF  M+   K ++ ++V    TF  + + Y  A  +KDA    + M Q GC  
Sbjct: 844  DMVEAGKLFHEMF--CKGLEPDSV----TFTELINGYCKAGHMKDAFRVHNHMIQAGCSP 897

Query: 169  DVFALNSLLSAICRDGKTIDAWQFLRVV-DGRIKPDNDTYAILLEGWEKERDVANAKKTF 227
            +V    +L+  +C++G    A + L  +    ++P+  TY  ++ G  K  ++  A K  
Sbjct: 898  NVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLV 957

Query: 228  GEMVIEVGWDPDNVP---AYDSYLIT-------------LLKGCDGIYETVNSLKR---- 267
            GE     G + D V      D+Y  +             L KG      T N L      
Sbjct: 958  GEFE-AAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCL 1016

Query: 268  -------------MMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTH 314
                         M+ +G  P  T F    ++     NL+ A  I+  M  R G  PD  
Sbjct: 1017 HGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSR-GVGPDGK 1075

Query: 315  MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
             Y  ++  +C +     A  L  EM   G    + TY++L +  +K +K  EA  +F++M
Sbjct: 1076 TYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQM 1135



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 87/386 (22%), Positives = 155/386 (40%), Gaps = 46/386 (11%)

Query: 134  SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
            ++A++  V        R+K+A     +ME  G   DV + +++++  CR G+    W+ +
Sbjct: 688  NVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLI 747

Query: 194  RVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
             V+  + +KP++  Y  ++    +   +A A++ F EM I  G  PD V  Y + +    
Sbjct: 748  EVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEM-IRQGILPDTV-VYTTLIDGFC 805

Query: 253  KGCDGIYETVNSLKRMMERGCNPG-MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRP 311
            K  D I         M  R   P  +T+  +    C  G  +   + ++  M  + G  P
Sbjct: 806  KRGD-IRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGK-LFHEMFCK-GLEP 862

Query: 312  DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLF 371
            D+  +  +I+ YC +     A ++ + M+  G  P++ TY  L + L K   L  A+ L 
Sbjct: 863  DSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELL 922

Query: 372  NEMVK---NENVLNHE----------NCRAAVRV----------------------YMDS 396
            +EM K     N+  +           N   AV++                      Y  S
Sbjct: 923  HEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKS 982

Query: 397  DDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFAL 456
             +   A +  K M+         T N+L+ G C   ML +  K    M  KGI       
Sbjct: 983  GEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTF 1042

Query: 457  SKL-KQILIK---ARKEAVYEELLKK 478
            + L KQ  I+       A+Y+++  +
Sbjct: 1043 NSLVKQYCIRNNLKAATAIYKDMCSR 1068



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 67/288 (23%), Positives = 123/288 (42%), Gaps = 25/288 (8%)

Query: 109  DLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKH 168
            DL   N L   MW   K   + N+    T+ S+ +    +  +++A+      E  G   
Sbjct: 914  DLDSANELLHEMW---KIGLQPNIF---TYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNA 967

Query: 169  DVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTF 227
            D     +L+ A C+ G+   A + L+ + G+ ++P   T+ +L+ G+     + + +K  
Sbjct: 968  DTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLL 1027

Query: 228  GEMVIEVGWDPDNVPAYDSYLITL-----LKGCDGIYETVNSLKRMMERGCNP-GMTFFK 281
              M+ + G  P N   ++S +        LK    IY      K M  RG  P G T+  
Sbjct: 1028 NWMLAK-GIAP-NATTFNSLVKQYCIRNNLKAATAIY------KDMCSRGVGPDGKTYEN 1079

Query: 282  LAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVY 341
            L    C   +N++ A F++  M G+ GF      Y+++I  +    +   A ++ D+M  
Sbjct: 1080 LVKGHC-KARNMKEAWFLFQEMKGK-GFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRR 1137

Query: 342  NGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAA 389
             G   D + ++   +   KG++        +E++  EN L  E  R A
Sbjct: 1138 EGLAADKEIFDFFSDTKYKGKRPDTIVDPIDEII--ENYLVDEQLRGA 1183


>gi|242069919|ref|XP_002450236.1| hypothetical protein SORBIDRAFT_05g002360 [Sorghum bicolor]
 gi|241936079|gb|EES09224.1| hypothetical protein SORBIDRAFT_05g002360 [Sorghum bicolor]
          Length = 833

 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 91/401 (22%), Positives = 171/401 (42%), Gaps = 14/401 (3%)

Query: 94  QLNDKHSP---YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVAD 149
           Q+ D+  P     +N V+D L K  + D      + M  + V  S  T+  +   Y+   
Sbjct: 329 QMIDRGIPPDVVTYNTVIDGLCKAQVVDRAKAVFQQMLDKGVKPSNGTYNCLIHGYLSTG 388

Query: 150 RVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDT-Y 207
           + K+ +   + M  +  + D F    LL  +C++G+  +A   F  V+   IKPD     
Sbjct: 389 KWKEVVRLLEEMSTHDLEPDCFIYALLLDYLCKNGRCTEARNIFDSVIRKGIKPDAMIDE 448

Query: 208 AILLEGWEKERDVANAKKTFGEMV---IEVGWDPDNVPAYDSYLITLLKGCD-GIYETVN 263
           A+ +    +++ ++     +G ++    ++G   D +  ++  +  +   C    +E   
Sbjct: 449 AVCIFDKMRQQGLSPNVVNYGALIDALCKLGRVDDAILKFNQMINEVYGLCTVEKWEKAE 508

Query: 264 SLK-RMMERGCNPGMTFFK-LAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMIS 321
            L   M+++G    +  F  L  + C  G+ +     I   ++ R+G RPD   YN ++ 
Sbjct: 509 ELVFEMLDQGIRLDVVVFNTLMCDLCREGRVMEAQRLI--ELMLRVGVRPDVISYNTLVD 566

Query: 322 LYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVL 381
            +C +  T  A KLLD MV  G  P+  TYN L     K R++ +A  L  EM+ N    
Sbjct: 567 GHCLTGRTDEAAKLLDVMVSIGLKPNEFTYNTLLHGYCKARRIDDAYSLLREMLMNGPTP 626

Query: 382 NHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYA 441
           +       +     +     A + +  MI +       T N+++ GLC  + + EA K  
Sbjct: 627 DVVTYNTILHGLFQTGRFSEAKELYLNMINSRTQWDMYTYNIILNGLCKNNCVDEAFKMF 686

Query: 442 KGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKCKAH 482
           + +  KG+Q+     + +   L+K  K+    +L     A+
Sbjct: 687 QSLCSKGLQLHIITFNIMIGALLKGGKKEDAMDLFATISAY 727



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 78/317 (24%), Positives = 138/317 (43%), Gaps = 11/317 (3%)

Query: 133 LSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQF 192
           L +  F ++        RV +A    ++M + G + DV + N+L+   C  G+T +A + 
Sbjct: 521 LDVVVFNTLMCDLCREGRVMEAQRLIELMLRVGVRPDVISYNTLVDGHCLTGRTDEAAKL 580

Query: 193 LRV-VDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITL 251
           L V V   +KP+  TY  LL G+ K R + +A     EM++  G  PD V  Y++ L  L
Sbjct: 581 LDVMVSIGLKPNEFTYNTLLHGYCKARRIDDAYSLLREMLMN-GPTPD-VVTYNTILHGL 638

Query: 252 LKGCDGIYETVNSLK-RMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFR 310
            +   G +     L   M+       M  + +          +  A  ++ ++  + G +
Sbjct: 639 FQ--TGRFSEAKELYLNMINSRTQWDMYTYNIILNGLCKNNCVDEAFKMFQSLCSK-GLQ 695

Query: 311 PDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGL 370
                +N+MI       +   AM L   +   G  PD++TY ++ E L+K   L E   L
Sbjct: 696 LHIITFNIMIGALLKGGKKEDAMDLFATISAYGLVPDVETYCLIAENLIKEGSLEELGVL 755

Query: 371 FNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCD 430
           F+ M +N    N     A VR ++   D   A  +   + E + S  + T ++L++    
Sbjct: 756 FSAMEENGTAPNSRMLNALVRRFLHRGDISRAGAYLSKLDEKNFSLEASTASMLIS---- 811

Query: 431 MHMLPEAVKYAKGMAEK 447
           ++   E  + AK + EK
Sbjct: 812 LYSRGEYQQLAKSLPEK 828



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 63/252 (25%), Positives = 110/252 (43%), Gaps = 29/252 (11%)

Query: 147 VADRVK-------DAITTFDVMEQYGCKHDVFALNSLLSAICRDG---KTIDAW------ 190
           +ADR +       DA+  FD++  +     V A N LL+A+ R      T+++       
Sbjct: 121 IADRAQSGSLASHDALKLFDLLLPHARPASVTAFNHLLTAVSRASGRHSTLESQLGISLF 180

Query: 191 -QFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLI 249
            + +R    ++ PD  TY+IL+  + +   + +    FG ++++ GW  +++        
Sbjct: 181 DRMVRECSDKVAPDRCTYSILIGCFCRMGRLEHGFAVFG-LILKTGWRVNHI-----VFN 234

Query: 250 TLLKG-CDG--IYETVNSLK-RMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVG 305
            LLKG CD   + E  N L  RM E GC P +  +    +          A  +   M  
Sbjct: 235 QLLKGLCDAKRLDEATNILLWRMPEFGCTPNVVSYNTLVKGFCNENRAEEALELLHVMAD 294

Query: 306 RIGFR--PDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRK 363
             G    PD   YN +I+ +    +   A  L  +M+  G  PD+ TYN + + L K + 
Sbjct: 295 DQGLSCPPDVVSYNTVINGFFREGQVDKAYNLFLQMIDRGIPPDVVTYNTVIDGLCKAQV 354

Query: 364 LWEASGLFNEMV 375
           +  A  +F +M+
Sbjct: 355 VDRAKAVFQQML 366


>gi|356570227|ref|XP_003553291.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g77405-like [Glycine max]
          Length = 732

 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 73/307 (23%), Positives = 120/307 (39%), Gaps = 37/307 (12%)

Query: 80  HPGP--AVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLAT 137
           H GP  A++FFRW   + N  HS      +  LLG+      +W  +K        ++  
Sbjct: 395 HLGPLKALEFFRWVEARFNFPHSEPTCRELACLLGRANALKPLWHFLKHSPHVTTATVTC 454

Query: 138 FASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVD 197
              +     +AD   +A+ TF  M+Q+ CK D  + N+L+ A+CR GK   A   L+ ++
Sbjct: 455 LIKLLGEQALAD---EALLTFHRMKQFRCKPDTHSYNTLIHALCRVGKFTKARSLLQQME 511

Query: 198 ---GRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG 254
               R  PD  TY IL+  + +   +   +K                             
Sbjct: 512 LPGFRCPPDTFTYTILISSYCRHGILTGCRKARRRR------------------------ 547

Query: 255 CDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTH 314
              IYE     + M+ R   P +  +    + C     +  A  ++  M  R G  P+  
Sbjct: 548 ---IYEAGRLFRLMLFRKLVPDVVTYNALIDGCCKTLRVERALELFDDM-KRRGLVPNRV 603

Query: 315 MYNMMISLYCYSNETGAAMKLLDEMVYNG-AFPDIQTYNILFEFLVKGRKLWEASGLFNE 373
            Y   I  YC  NE    +++L EM   G   P   +Y  +   L +  ++ EA     E
Sbjct: 604 TYGCFIRYYCVVNEIDKGVEMLREMQRLGHGVPGSSSYTPIIHALCEAGRVVEAWWFLVE 663

Query: 374 MVKNENV 380
           +V+  +V
Sbjct: 664 LVEGGSV 670



 Score = 46.2 bits (108), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 54/227 (23%), Positives = 90/227 (39%), Gaps = 17/227 (7%)

Query: 237 DPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGM-TFFKLAFEECLTGQNLRG 295
            P    A  + LI LL       E + +  RM +  C P   ++  L    C  G+  + 
Sbjct: 444 SPHVTTATVTCLIKLLGEQALADEALLTFHRMKQFRCKPDTHSYNTLIHALCRVGKFTKA 503

Query: 296 AEFIWGAMVGRIGFR--PDTHMYNMMISLYC-YSNETGA----------AMKLLDEMVYN 342
              +    +   GFR  PDT  Y ++IS YC +   TG           A +L   M++ 
Sbjct: 504 RSLLQQMELP--GFRCPPDTFTYTILISSYCRHGILTGCRKARRRRIYEAGRLFRLMLFR 561

Query: 343 GAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVA 402
              PD+ TYN L +   K  ++  A  LF++M +   V N       +R Y   ++    
Sbjct: 562 KLVPDVVTYNALIDGCCKTLRVERALELFDDMKRRGLVPNRVTYGCFIRYYCVVNEIDKG 621

Query: 403 IKFWKYMIE-NHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448
           ++  + M    H    S +   ++  LC+   + EA  +   + E G
Sbjct: 622 VEMLREMQRLGHGVPGSSSYTPIIHALCEAGRVVEAWWFLVELVEGG 668


>gi|357481045|ref|XP_003610808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512143|gb|AES93766.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1084

 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 102/477 (21%), Positives = 174/477 (36%), Gaps = 118/477 (24%)

Query: 80  HPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKN------------------------- 114
           +P   VKFF W+  Q+   H+P  ++ ++DLLG N                         
Sbjct: 118 NPELCVKFFLWAGRQIGYSHTPQVFDKLLDLLGCNVNADDRVPLKFLMEIKDDDHELLRR 177

Query: 115 --------CLFDAMWD-AIKSMKKENVL----SLATFASVFSSYVVADRVKDAITTFDVM 161
                   C  +  W+ A++ + +        S  T+ ++   ++ AD++  A      M
Sbjct: 178 LLNFLVRKCCRNGWWNMALEELGRLKDFGYKPSQTTYNALIQVFLRADKLDTAYLVKREM 237

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQFL--------------RVVDG--------- 198
             Y    D + L+    ++C+ GK  +A+  +              R+V G         
Sbjct: 238 LSYAFVMDRYTLSCFAYSLCKGGKCREAFDLIDEAEDFVPDTVFYNRMVSGLCEASLFEE 297

Query: 199 ------RIK-----PDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSY 247
                 R++     P+  TY ILL G  ++  +   K+    M+ E G  P N   ++S 
Sbjct: 298 AMDILHRMRSSSCIPNVVTYRILLSGCLRKGQLGRCKRILSMMITE-GCYP-NREIFNSL 355

Query: 248 LITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKL------------------------- 282
           +    K  D  Y      K+M++ GC PG   + +                         
Sbjct: 356 IHAYCKSRDYSY-AYKLFKKMIKCGCQPGYLVYNIFIGSVCSNEEQPSSDILDLVEKAYS 414

Query: 283 ---------------AFEECLTGQNLRGAEF-IWGAMVGRIGFRPDTHMYNMMISLYCYS 326
                           F  CL G       F I   M+G+ GF PD   Y+ +I   C +
Sbjct: 415 EMLDLGVVLNKVNVSNFARCLCGAGKFDQAFKIICEMMGK-GFVPDDSTYSKVIGFLCDA 473

Query: 327 NETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENC 386
           ++   A  L +EM  NG  P + TY IL +   K   + +A   F+EM+      N    
Sbjct: 474 SKVEKAFSLFEEMKRNGIVPSVYTYTILIDSFCKAGLIQQARKWFDEMLHKGCTPNVVTY 533

Query: 387 RAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVK-YAK 442
            A +  Y+ +    VA + ++ M+   C     T   L+ G C    + +A + YA+
Sbjct: 534 TALIHAYLKAKQMPVADELFEMMLLEGCKPNVVTYTALIDGHCKAGQIEKACQIYAR 590



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 70/270 (25%), Positives = 111/270 (41%), Gaps = 30/270 (11%)

Query: 200 IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG----- 254
           I P   TY IL++ + K   +  A+K F EM +  G  P NV  Y + +   LK      
Sbjct: 491 IVPSVYTYTILIDSFCKAGLIQQARKWFDEM-LHKGCTP-NVVTYTALIHAYLKAKQMPV 548

Query: 255 CDGIYETVNSLKRMMERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIG----- 308
            D ++E       M+  GC P + T+  L    C  GQ  +  + I+  M G I      
Sbjct: 549 ADELFEM------MLLEGCKPNVVTYTALIDGHCKAGQIEKACQ-IYARMRGDIESSDMD 601

Query: 309 --FR--------PDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFL 358
             F+        P+   Y  ++   C +N    A +LLD M+ +G  P+   Y+ + +  
Sbjct: 602 KYFKLDHNNCEGPNVITYGALVDGLCKANRVKEAHELLDTMLAHGCEPNQIVYDAVIDGF 661

Query: 359 VKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLS 418
            K  KL +A  +F +M +     N     + +      +   + +K    M+EN C+   
Sbjct: 662 CKIGKLQDAQEVFTKMSERGYSPNLYTYSSFIDCLFKDNRLDLVLKVLSKMLENSCTPNV 721

Query: 419 ETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448
                +V GLC +    EA K    M EKG
Sbjct: 722 VIYTEMVDGLCKIGKTDEAYKLMLKMEEKG 751



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 65/293 (22%), Positives = 120/293 (40%), Gaps = 22/293 (7%)

Query: 100 SPYAWNLVVDLLGKNCLFDAMWDAIKSM-KKENVLSLATFASVFSSYVVADRVKDAITTF 158
           S Y + +++D   K  L          M  K    ++ T+ ++  +Y+ A ++  A   F
Sbjct: 494 SVYTYTILIDSFCKAGLIQQARKWFDEMLHKGCTPNVVTYTALIHAYLKAKQMPVADELF 553

Query: 159 DVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIK----------------- 201
           ++M   GCK +V    +L+   C+ G+   A Q    + G I+                 
Sbjct: 554 EMMLLEGCKPNVVTYTALIDGHCKAGQIEKACQIYARMRGDIESSDMDKYFKLDHNNCEG 613

Query: 202 PDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYET 261
           P+  TY  L++G  K   V  A +    M+   G +P+ +  YD+ +    K    + + 
Sbjct: 614 PNVITYGALVDGLCKANRVKEAHELLDTMLAH-GCEPNQI-VYDAVIDGFCK-IGKLQDA 670

Query: 262 VNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMIS 321
                +M ERG +P +  +  +F +CL   N         + +      P+  +Y  M+ 
Sbjct: 671 QEVFTKMSERGYSPNLYTYS-SFIDCLFKDNRLDLVLKVLSKMLENSCTPNVVIYTEMVD 729

Query: 322 LYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
             C   +T  A KL+ +M   G  P++ TY  + +   K  K+ +   LF +M
Sbjct: 730 GLCKIGKTDEAYKLMLKMEEKGCNPNVVTYTAMIDGFGKSGKIEQCLELFRDM 782



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 83/393 (21%), Positives = 163/393 (41%), Gaps = 49/393 (12%)

Query: 134  SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-F 192
            ++ T+ ++      A+RVK+A    D M  +GC+ +    ++++   C+ GK  DA + F
Sbjct: 615  NVITYGALVDGLCKANRVKEAHELLDTMLAHGCEPNQIVYDAVIDGFCKIGKLQDAQEVF 674

Query: 193  LRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNV----------- 241
             ++ +    P+  TY+  ++   K+  +    K   +M +E    P+ V           
Sbjct: 675  TKMSERGYSPNLYTYSSFIDCLFKDNRLDLVLKVLSKM-LENSCTPNVVIYTEMVDGLCK 733

Query: 242  -----PAYDSYLITLLKGC-----------DG------IYETVNSLKRMMERGCNPGMTF 279
                  AY   L    KGC           DG      I + +   + M  +GC P    
Sbjct: 734  IGKTDEAYKLMLKMEEKGCNPNVVTYTAMIDGFGKSGKIEQCLELFRDMCSKGCAPNFIT 793

Query: 280  FKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEM 339
            +++    C +   L  A  +   M  +  + P  H+ +    +  +S E   ++ LLDE+
Sbjct: 794  YRVLINHCCSNGLLDEAYKLLDEM--KQTYWP-KHILSHRKIIEGFSQEFITSIGLLDEL 850

Query: 340  VYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNEN--VLNHENCRAAVRVYMDSD 397
              N + P    Y IL +  +K  +L  A  L  E+  + +  V N     + +     + 
Sbjct: 851  SENESVPVDSLYRILIDNYIKAGRLEVALDLLEEISSSPSHAVSNKYLYASLIENLSHAS 910

Query: 398  DPYVAIKFWKYMI-ENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI----QVT 452
                A++ +  MI +N   +LS   + L+ GL  +    EA++ +  + +  I    +  
Sbjct: 911  KVDKALELYASMISKNVVPELSILVH-LIKGLIKVDKWQEALQLSDSICQMDIHWLQEKA 969

Query: 453  PFALSKLKQILIKARKEA---VYEELLKKCKAH 482
                 ++ +++I A  EA   V EE+L++C ++
Sbjct: 970  TGRTEEMVKLVIAAMVEAETGVSEEILERCSSY 1002


>gi|224125420|ref|XP_002329801.1| predicted protein [Populus trichocarpa]
 gi|222870863|gb|EEF07994.1| predicted protein [Populus trichocarpa]
          Length = 478

 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 86/351 (24%), Positives = 145/351 (41%), Gaps = 40/351 (11%)

Query: 122 DAIKSMKKENVLSLA----TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLL 177
           DAI+   K N         ++ SVF+  V  +++K A++ +  M + G +  V +LN L+
Sbjct: 103 DAIRVFHKMNDFGCKPTDKSYISVFAILVEENQLKVAMSFYKYMREMGVRQSVVSLNVLI 162

Query: 178 SAICRDGKTID-AWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVG 235
            A+C++  TID A++  R +  R   PD+ TY  L+ G  K      AK+ F EM  + G
Sbjct: 163 KALCKNSGTIDAAFEIFREMPKRGCDPDSYTYGTLINGLCKLGKTFEAKELFKEMDTK-G 221

Query: 236 WDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGM-TFFKLAFEECLTGQNLR 294
             P +V  Y   +  L +  + + E +    +M ++   P + T+  L    C  G +L 
Sbjct: 222 CSP-SVVTYSCLMHGLCQAGN-VDEAMGLFDKMKKKAIEPNVFTYSSLMDGLCKNGGSLE 279

Query: 295 GAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNIL 354
             E +   M+ R   +P+   Y+ +I+  C   +   A++ LD M   G  PD   Y  +
Sbjct: 280 AMELL--EMMVRKRHKPNMVTYSTLINGLCKEGKLAEAVETLDRMKLQGLKPDAGLYGKI 337

Query: 355 FEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHC 414
                  RK  EA+   +EMV  +   N                       W   +    
Sbjct: 338 INGFCNIRKFQEAATYLDEMVLGQISPNRVT--------------------WSLHV---- 373

Query: 415 SDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIK 465
               +  N++V GLC    L  + +   GM  +GI +       L +   K
Sbjct: 374 ----KLNNMVVQGLCTNGNLNRSFQLYIGMRTRGISIDAGTFDSLVKCFCK 420



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 59/242 (24%), Positives = 107/242 (44%), Gaps = 12/242 (4%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           S+ T++ +      A  V +A+  FD M++   + +VF  +SL+  +C++G +++A + L
Sbjct: 225 SVVTYSCLMHGLCQAGNVDEAMGLFDKMKKKAIEPNVFTYSSLMDGLCKNGGSLEAMELL 284

Query: 194 RV-VDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
            + V  R KP+  TY+ L+ G  KE  +A A +T   M ++ G  PD        +I   
Sbjct: 285 EMMVRKRHKPNMVTYSTLINGLCKEGKLAEAVETLDRMKLQ-GLKPD--AGLYGKIINGF 341

Query: 253 KGCDGIYETVNSLKRMMERGCNPGMTFFKL-------AFEECLTGQNLRGAEFIWGAMVG 305
                  E    L  M+    +P    + L         +   T  NL  +  ++  M  
Sbjct: 342 CNIRKFQEAATYLDEMVLGQISPNRVTWSLHVKLNNMVVQGLCTNGNLNRSFQLYIGMRT 401

Query: 306 RIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLW 365
           R G   D   ++ ++  +C   +   A ++ DEMV +G  PD   ++ +       RK+ 
Sbjct: 402 R-GISIDAGTFDSLVKCFCKKGDLHKAARIFDEMVLDGCVPDHGIWSAVVGGFWDRRKVR 460

Query: 366 EA 367
           EA
Sbjct: 461 EA 462



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 75/327 (22%), Positives = 130/327 (39%), Gaps = 61/327 (18%)

Query: 136 ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRD-GKT---IDAWQ 191
            TF  + S  V A+  + A    + M++  C+        +  +ICR  G+    +DA +
Sbjct: 51  TTFGVMISKLVSANEFRPAEEMLNRMKEEKCR----ITEEIFLSICRGYGRVHMPLDAIR 106

Query: 192 -FLRVVDGRIKPDNDTY----AILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDS 246
            F ++ D   KP + +Y    AIL+E  E +  VA    +F + + E+G    +V + + 
Sbjct: 107 VFHKMNDFGCKPTDKSYISVFAILVE--ENQLKVA---MSFYKYMREMGVR-QSVVSLNV 160

Query: 247 YLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGR 306
            +  L K    I       + M +RGC+P                               
Sbjct: 161 LIKALCKNSGTIDAAFEIFREMPKRGCDP------------------------------- 189

Query: 307 IGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWE 366
                D++ Y  +I+  C   +T  A +L  EM   G  P + TY+ L   L +   + E
Sbjct: 190 -----DSYTYGTLINGLCKLGKTFEAKELFKEMDTKGCSPSVVTYSCLMHGLCQAGNVDE 244

Query: 367 ASGLFNEMVKNE---NVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNL 423
           A GLF++M K     NV  + +    +     +     A++  + M+         T + 
Sbjct: 245 AMGLFDKMKKKAIEPNVFTYSSLMDGL---CKNGGSLEAMELLEMMVRKRHKPNMVTYST 301

Query: 424 LVAGLCDMHMLPEAVKYAKGMAEKGIQ 450
           L+ GLC    L EAV+    M  +G++
Sbjct: 302 LINGLCKEGKLAEAVETLDRMKLQGLK 328


>gi|222623994|gb|EEE58126.1| hypothetical protein OsJ_09025 [Oryza sativa Japonica Group]
          Length = 1269

 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 87/321 (27%), Positives = 137/321 (42%), Gaps = 9/321 (2%)

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYAILLEGWEKERD 219
           M + GC  +    N L++ +CR G   +A+ F + + D  + PD  TY  L+ G  K R 
Sbjct: 248 MRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRR 307

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPG-MT 278
              AK    EM         NV  Y + +   ++  +   E    +K M+  G  P  +T
Sbjct: 308 SNEAKALLDEM--SCAELKPNVVVYANLIDGFMREGNA-DEAFKMIKEMVAAGVQPNKIT 364

Query: 279 FFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDE 338
           +  L    C  GQ  R A  +   MV R   RPDT  YN++I  +   +    A +LL E
Sbjct: 365 YDNLVRGLCKMGQMDR-ASLLLKQMV-RDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSE 422

Query: 339 MVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDD 398
           M   G  P++ TY+I+   L +  +  +AS L  EM       N       +  Y    +
Sbjct: 423 MENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGN 482

Query: 399 PYVAIKFWKYMIE-NHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALS 457
             +A + +  M + N   DL    N L+ GL  +  + E+ KY   M E+G+    F  S
Sbjct: 483 VSLACEIFDKMTKVNVLPDL-YCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYS 541

Query: 458 KLKQILIKARKEAVYEELLKK 478
            L    +K       E+L+++
Sbjct: 542 GLIHGYLKNGDLESAEQLVQR 562



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 72/299 (24%), Positives = 138/299 (46%), Gaps = 8/299 (2%)

Query: 88  FRWSAYQLNDKHSP--YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLA-TFASVFSS 144
           FR  +   N   SP  Y +++++  L ++   +   D ++ M  + +   A  +A + S 
Sbjct: 417 FRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISG 476

Query: 145 YVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPD 203
           Y     V  A   FD M +     D++  NSL+  + + G+  ++ ++   +  R + P+
Sbjct: 477 YCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPN 536

Query: 204 NDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVN 263
             TY+ L+ G+ K  D+ +A++    M ++ G  P++V  Y   L +  K  D I +  +
Sbjct: 537 EFTYSGLIHGYLKNGDLESAEQLVQRM-LDTGLKPNDV-IYIDLLESYFKS-DDIEKVSS 593

Query: 264 SLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLY 323
           + K M+++G       + +      +  N+  A  +    + + G  PD H+Y+ +IS  
Sbjct: 594 TFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSG-IEKNGSVPDVHVYSSLISGL 652

Query: 324 CYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLN 382
           C + +   A  +LDEM   G  P+I  YN L + L K   +  A  +FN ++    V N
Sbjct: 653 CKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPN 711



 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 62/283 (21%), Positives = 108/283 (38%), Gaps = 37/283 (13%)

Query: 127 MKKENVL-SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGK 185
           M K NVL  L  + S+        RV+++   F  M++ G   + F  + L+    ++G 
Sbjct: 493 MTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGD 552

Query: 186 TIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMV------------- 231
              A Q + R++D  +KP++  Y  LLE + K  D+     TF  M+             
Sbjct: 553 LESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGI 612

Query: 232 --------------------IEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMER 271
                               IE      +V  Y S +  L K  D   +    L  M ++
Sbjct: 613 LIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADR-EKAFGILDEMSKK 671

Query: 272 GCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGA 331
           G +P +  +    +      ++  A  ++ +++ + G  P+   Y  +I   C   +   
Sbjct: 672 GVDPNIVCYNALIDGLCKSGDISYARNVFNSILAK-GLVPNCVTYTSLIDGSCKVGDISN 730

Query: 332 AMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
           A  L +EM+  G  PD   Y++L         L +A  L  EM
Sbjct: 731 AFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEM 773



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 62/254 (24%), Positives = 109/254 (42%), Gaps = 13/254 (5%)

Query: 138 FASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVD 197
           +  +  SY  +D ++   +TF  M   G   D      L+  +   G    A++ L  ++
Sbjct: 575 YIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIE 634

Query: 198 --GRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
             G + PD   Y+ L+ G  K  D   A     EM  + G DP N+  Y++ +  L K  
Sbjct: 635 KNGSV-PDVHVYSSLISGLCKTADREKAFGILDEMS-KKGVDP-NIVCYNALIDGLCKSG 691

Query: 256 DGIYETVNSLKRMMERGCNPG-MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTH 314
           D  Y   N    ++ +G  P  +T+  L    C  G ++  A +++  M+   G  PD  
Sbjct: 692 DISYAR-NVFNSILAKGLVPNCVTYTSLIDGSCKVG-DISNAFYLYNEMLA-TGITPDAF 748

Query: 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
           +Y+++ +    + +   AM L++EM   G    I ++N L +   K  K+ E   L + +
Sbjct: 749 VYSVLTTGCSSAGDLEQAMFLIEEMFLRG-HASISSFNNLVDGFCKRGKMQETLKLLHVI 807

Query: 375 VKN---ENVLNHEN 385
           +      N L  EN
Sbjct: 808 MGRGLVPNALTIEN 821


>gi|222613081|gb|EEE51213.1| hypothetical protein OsJ_32035 [Oryza sativa Japonica Group]
          Length = 861

 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 80/302 (26%), Positives = 135/302 (44%), Gaps = 35/302 (11%)

Query: 81  PGPAVKFFRWSAYQLNDKHSP--YAWNLVVDLLGKNCLFDAMWDAIKS-MKKENVLSLAT 137
           P  AV  +   A    D+ +P    + +++    +    D  + A+ + +KK   +   T
Sbjct: 65  PAAAVSRYNRMARAGADEVTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVEAIT 124

Query: 138 FASVFSSYVVADRVKDAI-TTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           F  +        R  DA+      M + GC  +VF+ N+LL+ +C + ++ +A + L ++
Sbjct: 125 FTPLLKGLCADKRTSDAMDIVLRRMTELGCIPNVFSYNNLLNGLCDENRSQEALELLHMM 184

Query: 197 ----DGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
                G   PD  +Y  ++ G+ KE D   A  T+ EM ++ G  PD V  Y S +  L 
Sbjct: 185 ADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEM-LDRGILPD-VVTYSSIIAALC 242

Query: 253 KGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD 312
           KG            + M++            +  C  G+ +  +E ++  MV RIG +PD
Sbjct: 243 KG------------QAMDK-----------PWSHCKEGRVIE-SEKLFDLMV-RIGVKPD 277

Query: 313 THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFN 372
              Y+ +I  YC + +   AMKLL  MV  G  P+  TY+ L     K  ++ +A  LF 
Sbjct: 278 IITYSTLIDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFK 337

Query: 373 EM 374
           EM
Sbjct: 338 EM 339



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 58/265 (21%), Positives = 116/265 (43%), Gaps = 23/265 (8%)

Query: 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICR------------ 182
           + ++ +V + +        A +T+  M   G   DV   +S+++A+C+            
Sbjct: 196 VVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKGQAMDKPWSHCK 255

Query: 183 DGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNV 241
           +G+ I++ + F  +V   +KPD  TY+ L++G+     +  A K    MV  VG  P+ V
Sbjct: 256 EGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEAMKLLSGMV-SVGLKPNTV 314

Query: 242 PAYDSYLITLLKGCDGIYETVNSL---KRMMERGCNPGMTFFKLAFEECLTGQNLRGAEF 298
             Y     TL+ G   I    ++L   K M   G +P +  + +  +     +    A+ 
Sbjct: 315 -TYS----TLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKE 369

Query: 299 IWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFL 358
           ++   +   G + +   YN+++   C +  T  A+++   +       + +T+NI+ + L
Sbjct: 370 LY-VRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDAL 428

Query: 359 VKGRKLWEASGLFNEMVKNENVLNH 383
           +K  +  EA  LF     N  V N+
Sbjct: 429 LKVGRNDEAKDLFVAFSSNGLVPNY 453


>gi|242069107|ref|XP_002449830.1| hypothetical protein SORBIDRAFT_05g024080 [Sorghum bicolor]
 gi|241935673|gb|EES08818.1| hypothetical protein SORBIDRAFT_05g024080 [Sorghum bicolor]
          Length = 676

 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 79/302 (26%), Positives = 137/302 (45%), Gaps = 12/302 (3%)

Query: 151 VKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVV-DGRIKPDNDTYA 208
           VK A    + M   G K +V+   SL+  +C+ G T  A++ FL++V     KP+  TY 
Sbjct: 267 VKQAFHVLEEMVGKGLKPNVYTHTSLIDGLCKIGWTERAFRLFLKLVKSSSYKPNVHTYT 326

Query: 209 ILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC--DGIYETVNSLK 266
           +++ G+ KE  +A A+   G MV E G  P N   Y + +    +G   D  +E +N +K
Sbjct: 327 VMIGGYCKEGKLARAEMLLGRMV-EQGLAP-NTNTYTTLIDGHCRGGSFDRAFELMNKMK 384

Query: 267 RMMERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCY 325
                G  P + T+  +    C  G+  +  + +   M    G  PD   Y M+I+ +C 
Sbjct: 385 L---EGFLPNIYTYNAIIGGFCKKGKIQQAYKVLR--MATSQGLCPDKVTYTMLITEHCK 439

Query: 326 SNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHEN 385
                 A+ L ++M  N   PDI TY  +     + R++ ++  LF++ +    V   + 
Sbjct: 440 QGHITYALDLFNQMAENSCHPDIDTYTTIIAMYCQQRQMEQSQQLFDKCLSIGLVPTKQT 499

Query: 386 CRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMA 445
             + +  Y        A+K ++ M+++ C     T   L++GLC    L EA    + M 
Sbjct: 500 YTSMIAGYCRVGKSTSALKVFERMVQHGCLPDPITYGALISGLCKESRLEEARALFETML 559

Query: 446 EK 447
           +K
Sbjct: 560 DK 561



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/270 (22%), Positives = 102/270 (37%), Gaps = 40/270 (14%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           T+ ++   +        A    + M+  G   +++  N+++   C+ GK   A++ LR+ 
Sbjct: 359 TYTTLIDGHCRGGSFDRAFELMNKMKLEGFLPNIYTYNAIIGGFCKKGKIQQAYKVLRMA 418

Query: 197 DGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
             + + PD  TY +L+    K+  +  A   F +M  E    PD     D+Y   +   C
Sbjct: 419 TSQGLCPDKVTYTMLITEHCKQGHITYALDLFNQMA-ENSCHPD----IDTYTTIIAMYC 473

Query: 256 DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHM 315
                  +                    F++CL+                 IG  P    
Sbjct: 474 QQRQMEQSQQ-----------------LFDKCLS-----------------IGLVPTKQT 499

Query: 316 YNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
           Y  MI+ YC   ++ +A+K+ + MV +G  PD  TY  L   L K  +L EA  LF  M+
Sbjct: 500 YTSMIAGYCRVGKSTSALKVFERMVQHGCLPDPITYGALISGLCKESRLEEARALFETML 559

Query: 376 KNENVLNHENCRAAVRVYMDSDDPYVAIKF 405
               V     C      Y   D   +A+ F
Sbjct: 560 DKHMVPCDVTCVTLAYEYCRRDKTTIAVSF 589


>gi|125602942|gb|EAZ42267.1| hypothetical protein OsJ_26834 [Oryza sativa Japonica Group]
          Length = 1088

 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 79/313 (25%), Positives = 137/313 (43%), Gaps = 17/313 (5%)

Query: 157 TFDVMEQY------GCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYAI 209
           T  VM++Y      G + ++   N++++A+C+DG   DA   ++ V +  + PD  TY  
Sbjct: 366 TAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTS 425

Query: 210 LLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMM 269
           ++ G  ++ D+ +A + F +M  E G +P+ V    S LI  L     + E  + ++ M+
Sbjct: 426 MILGHCRKHDLDSALQVFNQMAKE-GCEPNTVTY--STLINGLCDSGRVNEAFDLIREMI 482

Query: 270 ERGCNP-GMTFFKLAFEECLTGQNLRGAEFIWGAMVG--RIGFRPDTHMYNMMISLYCYS 326
             G  P   T        C    ++   E  W   V     G  P+ + Y  +IS  C S
Sbjct: 483 LHGILPTAHTCTGPIIALC----DMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVS 538

Query: 327 NETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENC 386
                A+ L   M  +G FP+  TYN L   LV+ R++  A  + N M +N    N    
Sbjct: 539 GLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGLFTNIVTY 598

Query: 387 RAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAE 446
              ++ Y    DP  A+     M++   S    T N ++ G CD      A++    M +
Sbjct: 599 NEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRD 658

Query: 447 KGIQVTPFALSKL 459
            G +   ++ ++L
Sbjct: 659 GGCKPDEWSYTEL 671



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 85/339 (25%), Positives = 141/339 (41%), Gaps = 14/339 (4%)

Query: 117 FDAMWDAIKSMKKENV-LSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNS 175
            D+       M KE    +  T++++ +    + RV +A      M  +G          
Sbjct: 436 LDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTG 495

Query: 176 LLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEV 234
            + A+C  G   DAW+ F+ + +   +P+  TY  L+ G      +  A   F  M  + 
Sbjct: 496 PIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRD- 554

Query: 235 GWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLR 294
           G  P+ V  Y++ +  L++     Y  V  +  +M R    G+    + + E + G  + 
Sbjct: 555 GVFPNTV-TYNALINILVENRRIKYAFV--VLNLMGRN---GLFTNIVTYNEMIKGYCIL 608

Query: 295 G----AEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQT 350
           G    A  +   M+ R G   +   YN +I  YC S  T +A+++LD M   G  PD  +
Sbjct: 609 GDPKKAMLVMNNMLQR-GHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWS 667

Query: 351 YNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMI 410
           Y  L     K  K+  A GLFNEMV +    N     A +  Y   +    A    ++M 
Sbjct: 668 YTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMK 727

Query: 411 ENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
            + C    +T N+L+ GL   +    A +  K M E+GI
Sbjct: 728 RSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGI 766



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 73/319 (22%), Positives = 125/319 (39%), Gaps = 58/319 (18%)

Query: 95  LNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDA 154
           + ++   YA+ +V++L+G+N LF                ++ T+  +   Y +    K A
Sbjct: 571 VENRRIKYAF-VVLNLMGRNGLFT---------------NIVTYNEMIKGYCILGDPKKA 614

Query: 155 ITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV-DGRIKPDNDTYAILLEG 213
           +   + M Q G   ++   N+++   C  G T  A + L ++ DG  KPD  +Y  L+ G
Sbjct: 615 MLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICG 674

Query: 214 WEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMER-G 272
           + K   + +A   F EMV + G  P+ V  Y + +    K  D   +T  SL   M+R G
Sbjct: 675 FCKISKMESAFGLFNEMVDD-GLCPNEV-TYTALIDGYCK--DEKLDTATSLLEHMKRSG 730

Query: 273 CNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAA 332
           C P +  + +         N  GAE +   M+   G  P+   Y  MI   C +  T  A
Sbjct: 731 CRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEE-GIFPNVVTYTAMIDGLCKNGSTSLA 789

Query: 333 MKLLDEMVYNGAFP-----------------------------------DIQTYNILFEF 357
           +++ ++M+  G  P                                   D  TY  + E 
Sbjct: 790 LEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEA 849

Query: 358 LVKGRKLWEASGLFNEMVK 376
            +   K+  A      M+K
Sbjct: 850 YIMSGKVEHAFNFLGRMIK 868



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 54/227 (23%), Positives = 91/227 (40%), Gaps = 4/227 (1%)

Query: 243 AYDSYLITLLKGCDGIYETV-NSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWG 301
           AY + LI L +   G+   V +   RM+  G  P +  +           N+  AE I  
Sbjct: 352 AYSALLIHLSR--LGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAETIM- 408

Query: 302 AMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKG 361
             V      PDT  Y  MI  +C  ++  +A+++ ++M   G  P+  TY+ L   L   
Sbjct: 409 KKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDS 468

Query: 362 RKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETG 421
            ++ EA  L  EM+ +  +     C   +    D      A + +  M    C     T 
Sbjct: 469 GRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTY 528

Query: 422 NLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARK 468
             L++GLC   +L  A+     M+  G+       + L  IL++ R+
Sbjct: 529 TALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRR 575



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 55/239 (23%), Positives = 96/239 (40%), Gaps = 27/239 (11%)

Query: 160 VMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKER 218
           VM + G   +V    +++  +C++G T  A + F ++++    P+  TY+ L+    +E 
Sbjct: 760 VMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEG 819

Query: 219 DVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNP--- 275
            V  A+  F E+    G  PD +         ++ G   +    N L RM++ GC P   
Sbjct: 820 KVEEAENLFAELERH-GLIPDEITYVKMIEAYIMSG--KVEHAFNFLGRMIKAGCQPTLW 876

Query: 276 --GMTFFKLAFEECLTGQNL------------------RGAEFIWGAMVGRIGFRPDTHM 315
             G+    L  E  L  Q L                  + A  +  A +  +       +
Sbjct: 877 TYGVLIKGLKNEYLLADQRLAALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDPGLSVQV 936

Query: 316 YNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
            N ++S    +     A +LL  M+  G  PD + YN L   L++ R +  A G+F  M
Sbjct: 937 QNALVSNLSTAGRWFEANELLGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHM 995


>gi|255581238|ref|XP_002531431.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223528950|gb|EEF30943.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 737

 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 100/449 (22%), Positives = 193/449 (42%), Gaps = 12/449 (2%)

Query: 37  PTIKTLCEIIANTPS--PTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQ 94
           P ++ +C +I    +    +E  L + L  +    V  VL+   S    A+ FF W+  Q
Sbjct: 71  PLVREVCRLIERRSAWNAKLEGDLRRLLRSLKPRQVCAVLQLQ-SDERIALDFFYWAGRQ 129

Query: 95  LNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSL-ATFASVFSSYVVADRVKD 153
              +H P  + +++ +L K  L       ++ M +  +      FA V  SY  A ++++
Sbjct: 130 WRYRHDPIVYYMMLQVLSKTKLCQGARRVLRLMVRRGIARRPEAFAHVMVSYSRAGKLRN 189

Query: 154 AITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLE 212
           A+    +M++ G + ++   N+ +  +    K   A +FL R+    I P+  TY  L++
Sbjct: 190 AMQVLTMMQKAGVEPNLLICNTAIHVLVMANKLEKALRFLERMQLVGITPNVVTYNCLIK 249

Query: 213 GWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMME-- 270
           G+     V +A +   EM  + G  PD V  Y   ++  L     I E  N +++M++  
Sbjct: 250 GYCDLYQVEHAMELIAEMPFK-GCPPDKVSYYT--VMGFLCQDKRIKEVRNLMEKMVKDN 306

Query: 271 RGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETG 330
           +     +T+  L       G      EF+        GF+ D   Y+ +++ +C      
Sbjct: 307 KLFPDQVTYNTLVHMLSKHGHADEALEFLRET--EERGFQVDKVGYSAIVNSFCMQGRMD 364

Query: 331 AAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAV 390
            A ++++EM+  G  PD+ TY  +   L K  K+ EA  +  +M K+    N  +  A +
Sbjct: 365 RAKEIVNEMITKGCSPDVVTYTAVVNGLCKVGKVEEAKKMLQQMYKHGCKPNTVSYTALL 424

Query: 391 RVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQ 450
                  +   A +      E+  +  + T ++++ GL     L EA    + M  KG  
Sbjct: 425 NGLCQHGNSLEAREMMNTSEEDWWTPNAITYSVVMHGLRREGKLSEACDVVREMLTKGFF 484

Query: 451 VTPFALSKLKQILIKARKEAVYEELLKKC 479
            TP  ++ L + L   +K    ++ +++C
Sbjct: 485 PTPVEINLLIKSLCLEQKMNEAKKFMEEC 513



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 72/345 (20%), Positives = 141/345 (40%), Gaps = 9/345 (2%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASVFSSYVVADRVKDAITTFDVM 161
            +N +V +L K+   D   + ++  ++    +    ++++ +S+ +  R+  A    + M
Sbjct: 314 TYNTLVHMLSKHGHADEALEFLRETEERGFQVDKVGYSAIVNSFCMQGRMDRAKEIVNEM 373

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERDV 220
              GC  DV    ++++ +C+ GK  +A + L ++     KP+  +Y  LL G  +  + 
Sbjct: 374 ITKGCSPDVVTYTAVVNGLCKVGKVEEAKKMLQQMYKHGCKPNTVSYTALLNGLCQHGNS 433

Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFF 280
             A++       E  W   N   Y S ++  L+    + E  + ++ M+ +G  P     
Sbjct: 434 LEAREMMN--TSEEDWWTPNAITY-SVVMHGLRREGKLSEACDVVREMLTKGFFPTPVEI 490

Query: 281 KLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMV 340
            L  +     Q +  A+      + R G   +   +  +I  +C S+    A+ LLD+M 
Sbjct: 491 NLLIKSLCLEQKMNEAKKFMEECLNR-GCAVNAVNFTTVIHGFCQSDNIDTALSLLDDMY 549

Query: 341 YNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPY 400
            N   PD  T+  + + L K  ++ EA+    +M+K          RA +  Y       
Sbjct: 550 LNNKHPDAVTFTAIIDALGKKGRIEEATVYTMKMLKKGLDPTPVTYRAVIHQYCKMGRVE 609

Query: 401 VAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMA 445
             IK    M+    S      N ++  LC+    PEA     G+ 
Sbjct: 610 ELIKLLGKMLSR--SKCRTAYNQVIEKLCNFGN-PEAADKVVGLV 651



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 71/317 (22%), Positives = 131/317 (41%), Gaps = 22/317 (6%)

Query: 169 DVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTF 227
           D    N+L+  + + G   +A +FLR  + R  + D   Y+ ++  +  +  +  AK+  
Sbjct: 311 DQVTYNTLVHMLSKHGHADEALEFLRETEERGFQVDKVGYSAIVNSFCMQGRMDRAKEIV 370

Query: 228 GEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPG-MTFFKLAFEE 286
            EM+ + G  PD V  Y + +  L K    + E    L++M + GC P  +++  L    
Sbjct: 371 NEMITK-GCSPD-VVTYTAVVNGLCK-VGKVEEAKKMLQQMYKHGCKPNTVSYTALLNGL 427

Query: 287 CLTGQNLRGAEFI------WGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMV 340
           C  G +L   E +      W        + P+   Y++++       +   A  ++ EM+
Sbjct: 428 CQHGNSLEAREMMNTSEEDW--------WTPNAITYSVVMHGLRREGKLSEACDVVREML 479

Query: 341 YNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPY 400
             G FP     N+L + L   +K+ EA     E +     +N  N    +  +  SD+  
Sbjct: 480 TKGFFPTPVEINLLIKSLCLEQKMNEAKKFMEECLNRGCAVNAVNFTTVIHGFCQSDNID 539

Query: 401 VAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLK 460
            A+     M  N+    + T   ++  L     + EA  Y   M +KG+  TP      +
Sbjct: 540 TALSLLDDMYLNNKHPDAVTFTAIIDALGKKGRIEEATVYTMKMLKKGLDPTPVT---YR 596

Query: 461 QILIKARKEAVYEELLK 477
            ++ +  K    EEL+K
Sbjct: 597 AVIHQYCKMGRVEELIK 613


>gi|147798989|emb|CAN61637.1| hypothetical protein VITISV_008458 [Vitis vinifera]
          Length = 708

 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 81/361 (22%), Positives = 151/361 (41%), Gaps = 43/361 (11%)

Query: 136 ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR- 194
           AT   +  ++     V   +  F  M + G   +V    +L++ +C+ G    A++ L  
Sbjct: 260 ATCTLIIDAFCQKGYVNRVVGYFWKMVEMGLAPNVINFTALINGLCKQGSIKQAFELLEE 319

Query: 195 VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG 254
           +V    KP+  T+  L++G  K+     A + F ++V   G+ P NV  Y + +    K 
Sbjct: 320 MVRRGWKPNVYTHTTLIDGLCKKGWTEKAFRLFLKLVRSDGYKP-NVHTYTAMINGYCKE 378

Query: 255 CDGIYETVNSLKRMMERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDT 313
            D +      L RM E+G  P   T+  L    C  G  +R  E +   ++G+ GF P+ 
Sbjct: 379 -DKLNRAEMLLSRMQEQGLVPNTNTYTTLIDGHCKVGNFVRAYELM--DLMGKEGFSPNI 435

Query: 314 HMYNMMI-----------------------------------SLYCYSNETGAAMKLLDE 338
           + YN +I                                   S++C   +T  ++   ++
Sbjct: 436 YTYNAIIDGLCKKGSLDEAYRLLNKVSVHGLQADGVTYTILMSVHCRQADTNRSLVFFNK 495

Query: 339 MVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDD 398
           M+  G  PDI +Y  L     + +++ E+  LF E V    +   +   + +  Y    +
Sbjct: 496 MLKVGFTPDIHSYTTLISXFCRQKQMKESERLFEEAVSLGLIPTKKTYTSMICGYCRYGN 555

Query: 399 PYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSK 458
             +A+K ++ M  + C+  S T   L++GLC    L +A      M +KG+  +P  +++
Sbjct: 556 TSLAVKLFQRMSNHGCAPDSITYGALISGLCKESKLDDARNLYDAMMDKGL--SPCEVTR 613

Query: 459 L 459
           L
Sbjct: 614 L 614



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 76/321 (23%), Positives = 124/321 (38%), Gaps = 41/321 (12%)

Query: 132 VLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ 191
           V S  T   V    V    V+ A   F  M Q G   D  +   ++ A C  G+ ++A +
Sbjct: 186 VXSTQTLNCVLDVAVGMGLVEIAENMFVEMCQRGVSPDCVSFKLMVVACCNMGRVLEAEK 245

Query: 192 FLR-VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLIT 250
           +L  +V+     DN T  ++++ + ++  V      F +MV E+G  P NV  + + +  
Sbjct: 246 WLNAMVERGFIVDNATCTLIIDAFCQKGYVNRVVGYFWKMV-EMGLAP-NVINFTALING 303

Query: 251 LLKGCDGIYETVNSLKRMMERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGF 309
           L K    I +    L+ M+ RG  P + T   L    C  G   +    ++  +V   G+
Sbjct: 304 LCKQ-GSIKQAFELLEEMVRRGWKPNVYTHTTLIDGLCKKGWTEKAFR-LFLKLVRSDGY 361

Query: 310 RPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASG 369
           +P+ H Y  MI+ YC  ++   A  LL  M   G  P+  TY  L +   K      A  
Sbjct: 362 KPNVHTYTAMINGYCKEDKLNRAEMLLSRMQEQGLVPNTNTYTTLIDGHCKVGNFVRAYE 421

Query: 370 LFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLC 429
           L + M K                  +   P +                  T N ++ GLC
Sbjct: 422 LMDLMGK------------------EGFSPNIY-----------------TYNAIIDGLC 446

Query: 430 DMHMLPEAVKYAKGMAEKGIQ 450
               L EA +    ++  G+Q
Sbjct: 447 KKGSLDEAYRLLNKVSVHGLQ 467


>gi|449446121|ref|XP_004140820.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Cucumis sativus]
          Length = 590

 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 77/281 (27%), Positives = 126/281 (44%), Gaps = 18/281 (6%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVM 161
           ++N +++ L K+   D  +   K+M++  +   + T++ +        R+  A   FD M
Sbjct: 260 SFNTLINGLCKSRNLDEGFRLKKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEM 319

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDV 220
           +Q G + +     +L+   CR  +   A   + +++   +KPD   Y  LL G  K  DV
Sbjct: 320 QQRGLRPNGITFTALIDGQCRSRRIDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDV 379

Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG-C-DGIYETVNSLKRMMERGCNPGMT 278
             A+K   EM + VG  PD +        TL+ G C +G  E+   +++ M      G+ 
Sbjct: 380 NKARKLVDEMRM-VGMKPDKIT-----YTTLIDGYCKEGDLESAMEIRKGMNE---EGVV 430

Query: 279 FFKLAFEECLTG----QNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMK 334
              +AF   ++G      +R AE     MV   G +PD   Y M+I  YC         K
Sbjct: 431 LDNVAFTALISGFCRDGRVRDAERTLREMV-EAGMKPDDATYTMVIDGYCKKGNVKMGFK 489

Query: 335 LLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
           LL EM  NG  P + TYN+L   L K  ++  A+ L   M+
Sbjct: 490 LLKEMQINGHKPGVITYNVLMNGLCKQGQMKNANMLLEAML 530



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 68/244 (27%), Positives = 112/244 (45%), Gaps = 17/244 (6%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQF---L 193
           TF ++      + R+  A+ T+  M   G K D+   N+LL+ +C+ G    A +    +
Sbjct: 330 TFTALIDGQCRSRRIDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEM 389

Query: 194 RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLK 253
           R+V   +KPD  TY  L++G+ KE D+ +A      M I  G + + V   +     L+ 
Sbjct: 390 RMVG--MKPDKITYTTLIDGYCKEGDLESA------MEIRKGMNEEGVVLDNVAFTALIS 441

Query: 254 G-C-DG-IYETVNSLKRMMERGCNPGMTFFKLAFEE-CLTGQNLRGAEFIWGAMVGRIGF 309
           G C DG + +   +L+ M+E G  P    + +  +  C  G    G + +    +   G 
Sbjct: 442 GFCRDGRVRDAERTLREMVEAGMKPDDATYTMVIDGYCKKGNVKMGFKLLKEMQIN--GH 499

Query: 310 RPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASG 369
           +P    YN++++  C   +   A  LL+ M+  G  PD  TYNIL E   K  K  +   
Sbjct: 500 KPGVITYNVLMNGLCKQGQMKNANMLLEAMLNLGVTPDDITYNILLEGHCKNGKAEDLLK 559

Query: 370 LFNE 373
           L NE
Sbjct: 560 LRNE 563



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 67/300 (22%), Positives = 120/300 (40%), Gaps = 42/300 (14%)

Query: 151 VKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVD-GRIKPDNDTYAI 209
           ++DA   F+ + + G +    + N+L++ +C+     + ++  + ++  RI PD  TY++
Sbjct: 239 IRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNLDEGFRLKKTMEENRIYPDVFTYSV 298

Query: 210 LLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMM 269
           L+ G  KE  +  A++ F EM                                       
Sbjct: 299 LIHGLCKEGRLDVAEQLFDEM--------------------------------------Q 320

Query: 270 ERGCNP-GMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNE 328
           +RG  P G+TF  L   +C + + +  A   +  M+  +G +PD  MYN +++  C   +
Sbjct: 321 QRGLRPNGITFTALIDGQCRS-RRIDSAMNTYHQML-TMGVKPDLVMYNTLLNGLCKVGD 378

Query: 329 TGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRA 388
              A KL+DEM   G  PD  TY  L +   K   L  A  +   M +   VL++    A
Sbjct: 379 VNKARKLVDEMRMVGMKPDKITYTTLIDGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTA 438

Query: 389 AVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448
            +  +        A +  + M+E        T  +++ G C    +    K  K M   G
Sbjct: 439 LISGFCRDGRVRDAERTLREMVEAGMKPDDATYTMVIDGYCKKGNVKMGFKLLKEMQING 498



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 78/324 (24%), Positives = 123/324 (37%), Gaps = 42/324 (12%)

Query: 138 FASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVV 196
           F ++  +Y  +  V DAI  F ++     +        LL  +      +  W F   ++
Sbjct: 156 FDALMIAYWDSGFVSDAIQCFRLVRNSNFQIPFHGCGYLLDKMINSNSPVTIWTFYSEIL 215

Query: 197 DGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD 256
           +    P    Y IL+  + KE  + +AK  F E + + G  P  V ++++ LI  L    
Sbjct: 216 EYGFPPKVQYYNILINKFCKEGSIRDAKLIFNE-IRKRGLRPTTV-SFNT-LINGLCKSR 272

Query: 257 GIYETVNSLKRMMERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHM 315
            + E     K M E    P + T+  L    C  G+ L  AE ++  M  R G RP+   
Sbjct: 273 NLDEGFRLKKTMEENRIYPDVFTYSVLIHGLCKEGR-LDVAEQLFDEMQQR-GLRPNGIT 330

Query: 316 YNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
           +  +I   C S    +AM    +M+  G  PD+  YN L   L K   + +A  L +EM 
Sbjct: 331 FTALIDGQCRSRRIDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMR 390

Query: 376 KNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLP 435
                           V M  D                      T   L+ G C    L 
Sbjct: 391 M---------------VGMKPDKI--------------------TYTTLIDGYCKEGDLE 415

Query: 436 EAVKYAKGMAEKGIQVTPFALSKL 459
            A++  KGM E+G+ +   A + L
Sbjct: 416 SAMEIRKGMNEEGVVLDNVAFTAL 439


>gi|334186712|ref|NP_001190774.1| Pentatricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
 gi|223635614|sp|P0C8Q3.1|PP326_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g19890
 gi|332658842|gb|AEE84242.1| Pentatricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
          Length = 701

 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 100/410 (24%), Positives = 170/410 (41%), Gaps = 25/410 (6%)

Query: 55  EDVLDKTLIR--VSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSP--YAWNLVVDL 110
           E+V D+  +R  V   +  +++       G   +  RW    +     P      L++  
Sbjct: 202 ENVFDEMSVRGVVPDSSSYKLMVIGCFRDGKIQEADRWLTGMIQRGFIPDNATCTLILTA 261

Query: 111 LGKNCLFD-AMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHD 169
           L +N L + A+W   K +      +L  F S+         +K A    + M + G K +
Sbjct: 262 LCENGLVNRAIWYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPN 321

Query: 170 VFALNSLLSAICRDGKTIDAWQ-FLRVVDG-RIKPDNDTYAILLEGWEKERDVANAKKTF 227
           V+   +L+  +C+ G T  A++ FL++V     KP+  TY  ++ G+ KE  +  A+  F
Sbjct: 322 VYTHTALIDGLCKRGWTEKAFRLFLKLVRSDTYKPNVHTYTSMIGGYCKEDKLNRAEMLF 381

Query: 228 GEMVIEVGWDPDNVPAYDSYLITLLKG-CDG-----IYETVNSLKRMMERGCNPGMTFFK 281
             M  E G  P NV  Y     TL+ G C        YE +N    M + G  P +  + 
Sbjct: 382 SRMK-EQGLFP-NVNTYT----TLINGHCKAGSFGRAYELMN---LMGDEGFMPNIYTYN 432

Query: 282 LAFEE-CLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMV 340
            A +  C   +     E +  A     G   D   Y ++I   C  N+   A+     M 
Sbjct: 433 AAIDSLCKKSRAPEAYELLNKAF--SCGLEADGVTYTILIQEQCKQNDINQALAFFCRMN 490

Query: 341 YNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPY 400
             G   D++  NIL     + +K+ E+  LF  +V    +   E   + +  Y    D  
Sbjct: 491 KTGFEADMRLNNILIAAFCRQKKMKESERLFQLVVSLGLIPTKETYTSMISCYCKEGDID 550

Query: 401 VAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQ 450
           +A+K++  M  + C   S T   L++GLC   M+ EA K  + M ++G+ 
Sbjct: 551 LALKYFHNMKRHGCVPDSFTYGSLISGLCKKSMVDEACKLYEAMIDRGLS 600


>gi|302780004|ref|XP_002971777.1| hypothetical protein SELMODRAFT_96029 [Selaginella moellendorffii]
 gi|300160909|gb|EFJ27526.1| hypothetical protein SELMODRAFT_96029 [Selaginella moellendorffii]
          Length = 556

 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 68/302 (22%), Positives = 132/302 (43%), Gaps = 8/302 (2%)

Query: 79  SHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLAT 137
           S P  A++FF W+  Q   KH  +++N ++D+L K+          K +       +L T
Sbjct: 5   SRPDLAIQFFDWAGEQDGYKHDVHSYNHLLDILVKSGHQFRTGKVYKDLLHSGCSPNLVT 64

Query: 138 FASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVV 196
           F  +      A +   A+     ++++    DV+  N L+  + +DG    A + F  + 
Sbjct: 65  FKILIRGNCKAGQATRALEFLRALDEFSVAPDVYIFNFLIHGLFKDGNPDQAVKLFENME 124

Query: 197 DGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD 256
             R+ PD  TY  ++ G  K  ++  A++   EM+   G    ++  Y++ +   +    
Sbjct: 125 SSRVNPDIFTYNTVISGLCKSGNLEKARELLEEMIRRGGKSAPDIVTYNTLINAGICKDG 184

Query: 257 GIYETVNSLKRMMERGCNPG-MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHM 315
            + E +  L  M   G  P  +T+  +    C+ G+ +  AE +       +   PD   
Sbjct: 185 DVEEALEILDGMKLAGPAPDVITYNSIIHALCVAGRVVEAAEILK-----TMSCSPDLVT 239

Query: 316 YNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
           +N ++  +C +     A+++L+EM      PD+ TY IL   L +  ++  A  L  E+V
Sbjct: 240 FNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYLLEEIV 299

Query: 376 KN 377
           + 
Sbjct: 300 RQ 301



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 102/435 (23%), Positives = 183/435 (42%), Gaps = 54/435 (12%)

Query: 76  FSYSHPGPAVKFFR-WSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLS 134
           F   +P  AVK F    + ++N     + +N V+  L K+   +   + ++ M +    S
Sbjct: 108 FKDGNPDQAVKLFENMESSRVNP--DIFTYNTVISGLCKSGNLEKARELLEEMIRRGGKS 165

Query: 135 ---LATFASVFSSYVVAD-RVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAW 190
              + T+ ++ ++ +  D  V++A+   D M+  G   DV   NS++ A+C  G+ ++A 
Sbjct: 166 APDIVTYNTLINAGICKDGDVEEALEILDGMKLAGPAPDVITYNSIIHALCVAGRVVEAA 225

Query: 191 QFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLIT 250
           + L+ +     PD  T+  LL+G+ K   +  A +   EM  E     + +P   +Y I 
Sbjct: 226 EILKTMS--CSPDLVTFNTLLDGFCKAGMLPRALEVLEEMCRE-----NILPDVITYTIL 278

Query: 251 LLKGC--DGIYETVNSLKRMMERGCNPG-MTFFKLAFEECLTGQ--------NLRGAEFI 299
           +   C    +      L+ ++ +G  P  + +  L    C +G+            A  I
Sbjct: 279 VNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSAREI 338

Query: 300 WGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLV 359
              MV  I   P    YN+++           A+ L+ ++V  G  PD+ TYN L + L 
Sbjct: 339 LAEMVS-INMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYNTLIDGLC 397

Query: 360 KGRKLWEASGLFNEMVK-----NENVLNH---ENCRAAVRVYMDSDDPYVAIKFWKYMIE 411
           K  ++ EA  L +EM       N+  L       CR   RV    DD       W  ++E
Sbjct: 398 KANRVREACDLADEMASLGCFPNDVTLGSVVFGLCRVG-RV----DDA------WSLVVE 446

Query: 412 ----NHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIK-- 465
                H  ++    + L+ GLC    + +A      M  +G+ +  FA  KL   +I   
Sbjct: 447 MSRKRHAPNVVVYTS-LIDGLCKSDRMDDACVVLDAMRGQGVALDDFAYRKLIVSMIHGG 505

Query: 466 --ARKEAVYEELLKK 478
             A   A+Y+E++ +
Sbjct: 506 RVAEAMAMYDEMVAR 520


>gi|15221300|ref|NP_177597.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169839|sp|Q9CA58.1|PP120_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g74580
 gi|12324819|gb|AAG52381.1|AC011765_33 hypothetical protein; 77097-79388 [Arabidopsis thaliana]
 gi|332197491|gb|AEE35612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 763

 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 93/404 (23%), Positives = 168/404 (41%), Gaps = 36/404 (8%)

Query: 81  PGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKE--NVLSLATF 138
           P  A++ F     ++  KH+   +  V++ LG    F+AM + +  M++   N +    +
Sbjct: 20  PMKALEMFNSMRKEVGFKHTLSTYRSVIEKLGYYGKFEAMEEVLVDMRENVGNHMLEGVY 79

Query: 139 ASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVD 197
                +Y    +V++A+  F+ M+ Y C+  VF+ N+++S +   G    A + ++R+ D
Sbjct: 80  VGAMKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSVLVDSGYFDQAHKVYMRMRD 139

Query: 198 GRIKPDNDTYAILLEGWEKE-------RDVANAKKTFGEM------VIEVGWDPDNVPA- 243
             I PD  ++ I ++ + K        R + N      EM       +  G+  +N  A 
Sbjct: 140 RGITPDVYSFTIRMKSFCKTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKAE 199

Query: 244 -YDSYLITLLKGCDGIYETVNSLKRMM-----------------ERGCNPGMTFFKLAFE 285
            Y+ +   L  G      T N L R++                 +RG  P +  + L  +
Sbjct: 200 GYELFGKMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQ 259

Query: 286 ECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAF 345
                  L GA  + G ++ + G +PD   YN +I   C +++   A   L +MV  G  
Sbjct: 260 GLCQRGELDGAVRMVGCLIEQ-GPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLE 318

Query: 346 PDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKF 405
           PD  TYN L     KG  +  A  +  + V N  V +    R+ +       +   A+  
Sbjct: 319 PDSYTYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALAL 378

Query: 406 WKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
           +   +           N L+ GL +  M+ EA + A  M+EKG+
Sbjct: 379 FNEALGKGIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGL 422



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 78/283 (27%), Positives = 127/283 (44%), Gaps = 19/283 (6%)

Query: 103 AWNLVVDLLGK-NCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVM 161
            +N++V+ L K  C+ DA       + K     + TF  +   Y    ++++A+   DVM
Sbjct: 428 TFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVM 487

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDV 220
              G   DV+  NSLL+ +C+  K  D  + +  +V+    P+  T+ ILLE   + R +
Sbjct: 488 LDNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRKL 547

Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG-C-DGIYETVNSLKRMMERG-----C 273
             A     EM  +   +PD V        TL+ G C +G  +   +L R ME        
Sbjct: 548 DEALGLLEEMKNK-SVNPDAVT-----FGTLIDGFCKNGDLDGAYTLFRKMEEAYKVSSS 601

Query: 274 NPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAM 333
            P       AF E L   N+  AE ++  MV R    PD + Y +M+  +C +       
Sbjct: 602 TPTYNIIIHAFTEKL---NVTMAEKLFQEMVDRC-LGPDGYTYRLMVDGFCKTGNVNLGY 657

Query: 334 KLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK 376
           K L EM+ NG  P + T   +   L    +++EA+G+ + MV+
Sbjct: 658 KFLLEMMENGFIPSLTTLGRVINCLCVEDRVYEAAGIIHRMVQ 700



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 87/372 (23%), Positives = 148/372 (39%), Gaps = 40/372 (10%)

Query: 133 LSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQF 192
           +++  + +V   +   +   +    F  M   G    +   N LL  +C+ G   +  + 
Sbjct: 179 MNVVAYCTVVGGFYEENFKAEGYELFGKMLASGVSLCLSTFNKLLRVLCKKGDVKECEKL 238

Query: 193 L-RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITL 251
           L +V+   + P+  TY + ++G  +  ++  A +  G  +IE G  PD V  Y++ +  L
Sbjct: 239 LDKVIKRGVLPNLFTYNLFIQGLCQRGELDGAVRMVG-CLIEQGPKPD-VITYNNLIYGL 296

Query: 252 LKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRP 311
            K      E    L +M+  G  P    +         G  ++ AE I G  V   GF P
Sbjct: 297 CKNSK-FQEAEVYLGKMVNEGLEPDSYTYNTLIAGYCKGGMVQLAERIVGDAVFN-GFVP 354

Query: 312 DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLF 371
           D   Y  +I   C+  ET  A+ L +E +  G  P++  YN L + L     + EA+ L 
Sbjct: 355 DQFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGMILEAAQLA 414

Query: 372 NEM--------VKNENVLNHENCRAA--------VRVYMDSD---DPYV----------- 401
           NEM        V+  N+L +  C+          V+V +      D +            
Sbjct: 415 NEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQ 474

Query: 402 -----AIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFAL 456
                A++    M++N       T N L+ GLC      + ++  K M EKG     F  
Sbjct: 475 LKMENALEILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTF 534

Query: 457 SKLKQILIKARK 468
           + L + L + RK
Sbjct: 535 NILLESLCRYRK 546



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 64/214 (29%), Positives = 102/214 (47%), Gaps = 8/214 (3%)

Query: 169 DVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTF 227
           D F   SL+  +C +G+T  A        G+ IKP+   Y  L++G   +  +  A +  
Sbjct: 355 DQFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGMILEAAQLA 414

Query: 228 GEMVIEVGWDPDNVPAYDSYLITLLK-GCDGIYETVNSLKRMMERGCNPGMTFFKLAFEE 286
            EM  E G  P+ V  ++  +  L K GC  + +    +K M+ +G  P +  F +    
Sbjct: 415 NEMS-EKGLIPE-VQTFNILVNGLCKMGC--VSDADGLVKVMISKGYFPDIFTFNILIHG 470

Query: 287 CLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFP 346
             T   +  A  I   M+   G  PD + YN +++  C +++    M+    MV  G  P
Sbjct: 471 YSTQLKMENALEILDVMLDN-GVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAP 529

Query: 347 DIQTYNILFEFLVKGRKLWEASGLFNEMVKNENV 380
           ++ T+NIL E L + RKL EA GL  EM KN++V
Sbjct: 530 NLFTFNILLESLCRYRKLDEALGLLEEM-KNKSV 562



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 86/362 (23%), Positives = 147/362 (40%), Gaps = 75/362 (20%)

Query: 125 KSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDG 184
           K +K+  + +L T+            +  A+     + + G K DV   N+L+  +C++ 
Sbjct: 241 KVIKRGVLPNLFTYNLFIQGLCQRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNS 300

Query: 185 KTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPA 243
           K  +A  +L ++V+  ++PD+ TY  L+ G+ K   V  A++  G+ V   G+ PD    
Sbjct: 301 KFQEAEVYLGKMVNEGLEPDSYTYNTLIAGYCKGGMVQLAERIVGDAVFN-GFVPDQF-T 358

Query: 244 YDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAM 303
           Y S +       DG+              C+ G T   LA               ++   
Sbjct: 359 YRSLI-------DGL--------------CHEGETNRALA---------------LFNEA 382

Query: 304 VGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRK 363
           +G+ G +P+  +YN +I           A +L +EM   G  P++QT+NIL   L K   
Sbjct: 383 LGK-GIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGC 441

Query: 364 LWEASGLFNEMVKNE--------NVLNH--------ENCRAAVRVYMDSD-DPYV----- 401
           + +A GL   M+           N+L H        EN    + V +D+  DP V     
Sbjct: 442 VSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMLDNGVDPDVYTYNS 501

Query: 402 -------------AIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448
                         ++ +K M+E  C+    T N+L+  LC    L EA+   + M  K 
Sbjct: 502 LLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKS 561

Query: 449 IQ 450
           + 
Sbjct: 562 VN 563



 Score = 43.1 bits (100), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 41/209 (19%), Positives = 87/209 (41%), Gaps = 35/209 (16%)

Query: 102 YAWNLVVDLLGKNCLFDAMWDAIKSM-KKENVLSLATFASVFSSYVVADRVKDAITTFDV 160
           Y +N +++ L K   F+ + +  K+M +K    +L TF  +  S     ++ +A+   + 
Sbjct: 497 YTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEALGLLEE 556

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDG--RIKPDNDTYAILLEGWEKER 218
           M+      D     +L+   C++G    A+   R ++   ++     TY I++  + ++ 
Sbjct: 557 MKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEAYKVSSSTPTYNIIIHAFTEKL 616

Query: 219 DVANAKKTFGEMV-----------------------IEVGW-------DPDNVPAYDSY- 247
           +V  A+K F EMV                       + +G+       +   +P+  +  
Sbjct: 617 NVTMAEKLFQEMVDRCLGPDGYTYRLMVDGFCKTGNVNLGYKFLLEMMENGFIPSLTTLG 676

Query: 248 -LITLLKGCDGIYETVNSLKRMMERGCNP 275
            +I  L   D +YE    + RM+++G  P
Sbjct: 677 RVINCLCVEDRVYEAAGIIHRMVQKGLVP 705


>gi|357159762|ref|XP_003578551.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
           mitochondrial-like [Brachypodium distachyon]
          Length = 534

 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 89/367 (24%), Positives = 140/367 (38%), Gaps = 49/367 (13%)

Query: 35  LPPTIKTLCEIIANTPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGP-AVKFFRWSAY 93
           LP    TL  ++ +TPSP            ++     ++L      P P A+ FF     
Sbjct: 78  LPSLSTTLTGLLPSTPSP-----------HLTFHVFGRLLALRRGIPFPEALAFFNHVLP 126

Query: 94  QLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASVFSSYVVADRVK 152
            L     P  +  ++DLL K+  F      +  M+K ++ +S     ++   YV A    
Sbjct: 127 SLPTDSLPELYASMMDLLAKHHHFPLARHLLDEMRKRSIPISSQVILALIRRYVRAGMSS 186

Query: 153 DAITTFDVMEQYGCK-HDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILL 211
           +A   F  ME+YG    D   L SLL A+ +     +A            PD   Y  L+
Sbjct: 187 EASDLFRSMEEYGGGVPDPAVLASLLGALSKKRLASEAQALFDSYKSVFTPDVVLYTTLV 246

Query: 212 EGWEKERDVANAKKTFGEM--------------VIEVGWDPDNVPAYDSYLITLL-KGCD 256
             W +   +  A++ F EM              VI+  +    VP     L  ++  GC 
Sbjct: 247 HAWCRSGCLDKAEQVFAEMQQAGIMPNVYTYTAVIDAMYRAGQVPRAQELLCQMIDSGCP 306

Query: 257 GIYETVNSLKR-----------------MMERGCNPGMTFFKLAFE-ECLTGQ-NLRGAE 297
               T N++ R                 M + GC+P +  +    E  C  GQ NL  A 
Sbjct: 307 PNTATFNAIMRAHVKAGRSEQVLQVHNQMRQLGCDPDIITYNFLMETHCGKGQSNLDAAM 366

Query: 298 FIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEF 357
            +   M+ + G  PD H +N M+ L        AA KL + M      P++ TYN+L + 
Sbjct: 367 KLLLKMIAK-GCTPDCHTFNPMLKLVVVLGNVDAAHKLYERMQELQCKPNVITYNLLMKL 425

Query: 358 LVKGRKL 364
             K + +
Sbjct: 426 FGKDKSM 432



 Score = 39.7 bits (91), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 25/121 (20%), Positives = 50/121 (41%)

Query: 309 FRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEAS 368
           F PD  +Y  ++  +C S     A ++  EM   G  P++ TY  + + + +  ++  A 
Sbjct: 235 FTPDVVLYTTLVHAWCRSGCLDKAEQVFAEMQQAGIMPNVYTYTAVIDAMYRAGQVPRAQ 294

Query: 369 GLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGL 428
            L  +M+ +    N     A +R ++ +      ++    M +  C     T N L+   
Sbjct: 295 ELLCQMIDSGCPPNTATFNAIMRAHVKAGRSEQVLQVHNQMRQLGCDPDIITYNFLMETH 354

Query: 429 C 429
           C
Sbjct: 355 C 355


>gi|168049701|ref|XP_001777300.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162671276|gb|EDQ57830.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 291

 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 75/283 (26%), Positives = 127/283 (44%), Gaps = 25/283 (8%)

Query: 101 PYAWNLVVDLLGKNCLFD----AMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAIT 156
           P+ +  ++D LG +   D       D   S+KK+ VL    + S+  +Y  + +V+ A  
Sbjct: 11  PHLYTTIIDTLGSSGCLDLAKKIFSDMDDSVKKDTVL----YNSLLHAYCKSGQVETANE 66

Query: 157 TFDVMEQYGCKHDVFALNSLLSAICRD--GKTIDAWQFLRVVDGRIKPDNDTYAILLEGW 214
            F+ M+Q  C+ D+   N++++   +   G T     F  +    I+PD  +Y ILL   
Sbjct: 67  LFNSMKQKDCRPDLSTYNTIMNMYVKTDVGLTKVLSLFKEMCLQGIQPDVVSYDILLAAC 126

Query: 215 EKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSL----KRMME 270
             ++ V  A++ F  M    G  P  V  Y S LIT+     GIY + N L      M+ 
Sbjct: 127 APKQHVKEAQRIFDTMKKRRGIKP-TVVTYTS-LITVYANA-GIYSSPNQLCPLFGEMVA 183

Query: 271 RGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETG 330
             C P +  F      C  G ++  A+ I+ AM    G +P+   YN +I++Y    E  
Sbjct: 184 EKCQPNVKTFTSLINSCRKGGHVEEAQTIFEAM-KEYGVKPNVVTYNALINVYTERGEQD 242

Query: 331 AAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNE 373
            A ++  +MV +G  P   ++ +L          ++A+G F E
Sbjct: 243 GAQRVFLQMVQSGLQPTGVSFTVLMS-------SFKATGAFKE 278



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 60/260 (23%), Positives = 108/260 (41%), Gaps = 10/260 (3%)

Query: 166 CKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKK 225
           C+ D     +++  +   G    A +    +D  +K D   Y  LL  + K   V  A +
Sbjct: 7   CRLDPHLYTTIIDTLGSSGCLDLAKKIFSDMDDSVKKDTVLYNSLLHAYCKSGQVETANE 66

Query: 226 TFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFE 285
            F  M  +    PD +  Y++ +   +K   G+ + ++  K M  +G  P +  + +   
Sbjct: 67  LFNSMK-QKDCRPD-LSTYNTIMNMYVKTDVGLTKVLSLFKEMCLQGIQPDVVSYDILLA 124

Query: 286 ECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYC----YSNETGAAMKLLDEMVY 341
            C   Q+++ A+ I+  M  R G +P    Y  +I++Y     YS+       L  EMV 
Sbjct: 125 ACAPKQHVKEAQRIFDTMKKRRGIKPTVVTYTSLITVYANAGIYSSPNQLC-PLFGEMVA 183

Query: 342 NGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYV 401
               P+++T+  L     KG  + EA  +F  M +     N     A + VY +  +   
Sbjct: 184 EKCQPNVKTFTSLINSCRKGGHVEEAQTIFEAMKEYGVKPNVVTYNALINVYTERGEQDG 243

Query: 402 AIKFWKYMIENHCSDLSETG 421
           A + +  M++   S L  TG
Sbjct: 244 AQRVFLQMVQ---SGLQPTG 260


>gi|255539453|ref|XP_002510791.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549906|gb|EEF51393.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 475

 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 84/337 (24%), Positives = 141/337 (41%), Gaps = 15/337 (4%)

Query: 41  TLCEIIANTPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHS 100
            L E+        V +VL   L  +  +   +  K  Y       KFF WS+ Q N +H+
Sbjct: 101 ALSELDLRVSGLLVREVLAGILRNIGIDNKTRCAKLGY-------KFFIWSSQQENYRHT 153

Query: 101 PYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLA-TFASVFSSYVVADRVKDAITTFD 159
              ++L++ +      F AMW  +  M +    + A TF  +  +   A   +  +  F 
Sbjct: 154 ANNYHLIMKIFADCEEFKAMWRLLDEMVENGFPTTARTFNILICTCGGAGLARKVVERFI 213

Query: 160 VMEQYGCKHDVFALNSLLSAI--CRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKE 217
             + +  +    + N++L ++   R+ K I+      +V+G   PD  TY IL+    + 
Sbjct: 214 KSKTFNYRPFKHSYNAILLSLLAIREYKLIEWVHQQMLVEGYC-PDTLTYNILMCAKYRL 272

Query: 218 RDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGM 277
             + +  +   EM    G+ PD    Y+  L  L KG   I   +  L  M E G +P +
Sbjct: 273 GKLHHFHRLLDEMG-RSGFSPD-FHTYNILLHVLGKGNKPI-AALKLLNHMKEIGFDPSI 329

Query: 278 TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLD 337
             F    +      NL    + +  M+ + GF PD   Y +MI+ Y  + E   A ++ D
Sbjct: 330 LHFTTLIDGLSRAGNLDACNYFFDEMI-KNGFVPDVVCYTVMITGYIVAGELEKAREIFD 388

Query: 338 EMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
           EM+  G  P++ TYN +   L    K  EA  +  EM
Sbjct: 389 EMIARGQLPNVFTYNSMIRGLCMAGKFEEARCMLKEM 425



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 78/175 (44%)

Query: 304 VGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRK 363
           +GR GF PD H YN+++ +    N+  AA+KLL+ M   G  P I  +  L + L +   
Sbjct: 285 MGRSGFSPDFHTYNILLHVLGKGNKPIAALKLLNHMKEIGFDPSILHFTTLIDGLSRAGN 344

Query: 364 LWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNL 423
           L   +  F+EM+KN  V +       +  Y+ + +   A + +  MI         T N 
Sbjct: 345 LDACNYFFDEMIKNGFVPDVVCYTVMITGYIVAGELEKAREIFDEMIARGQLPNVFTYNS 404

Query: 424 LVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKK 478
           ++ GLC      EA    K M  +G +      + L   L  A K +   E++K+
Sbjct: 405 MIRGLCMAGKFEEARCMLKEMGSRGCKPNFLVYNTLVNNLRNAGKLSEAREVIKE 459



 Score = 41.2 bits (95), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 7/118 (5%)

Query: 114 NCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFAL 173
           N  FD M      +K   V  +  +  + + Y+VA  ++ A   FD M   G   +VF  
Sbjct: 349 NYFFDEM------IKNGFVPDVVCYTVMITGYIVAGELEKAREIFDEMIARGQLPNVFTY 402

Query: 174 NSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEM 230
           NS++  +C  GK  +A   L+ +  R  KP+   Y  L+        ++ A++   EM
Sbjct: 403 NSMIRGLCMAGKFEEARCMLKEMGSRGCKPNFLVYNTLVNNLRNAGKLSEAREVIKEM 460


>gi|186478651|ref|NP_173362.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806505|sp|Q9LN69.2|PPR50_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g19290
 gi|332191705|gb|AEE29826.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 904

 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 92/355 (25%), Positives = 145/355 (40%), Gaps = 51/355 (14%)

Query: 138 FASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVV 196
           +  +   Y    +++DA+   D M + G + +    NSL++  C+ G+ ++A Q F R+ 
Sbjct: 334 YGVLMDGYCRTGQIRDAVRVHDNMIEIGVRTNTTICNSLINGYCKSGQLVEAEQIFSRMN 393

Query: 197 DGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD 256
           D  +KPD+ TY  L++G+ +   V  A K   +M        + VP   +Y I LLKG  
Sbjct: 394 DWSLKPDHHTYNTLVDGYCRAGYVDEALKLCDQMC-----QKEVVPTVMTYNI-LLKGYS 447

Query: 257 --GIYETVNSL-KRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDT 313
             G +  V SL K M++RG N          E      +   A  +W  ++ R G   DT
Sbjct: 448 RIGAFHDVLSLWKMMLKRGVNADEISCSTLLEALFKLGDFNEAMKLWENVLAR-GLLTDT 506

Query: 314 HMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNE 373
              N+MIS  C   +   A ++LD +      P +QTY  L     K   L EA      
Sbjct: 507 ITLNVMISGLCKMEKVNEAKEILDNVNIFRCKPAVQTYQALSHGYYKVGNLKEA------ 560

Query: 374 MVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIE--------NHCSDL-------- 417
                          AV+ YM+    +  I+ +  +I         N  +DL        
Sbjct: 561 --------------FAVKEYMERKGIFPTIEMYNTLISGAFKYRHLNKVADLVIELRARG 606

Query: 418 ----SETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARK 468
                 T   L+ G C++ M+ +A      M EKGI +     SK+   L +  K
Sbjct: 607 LTPTVATYGALITGWCNIGMIDKAYATCFEMIEKGITLNVNICSKIANSLFRLDK 661



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 66/306 (21%), Positives = 123/306 (40%), Gaps = 40/306 (13%)

Query: 133 LSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQF 192
           L++ T+ S+ + Y +   V+       +M + G   +V    SL+   C+ G   +A   
Sbjct: 259 LNVVTYNSLINGYAMIGDVEGMTRVLRLMSERGVSRNVVTYTSLIKGYCKKGLMEEAEHV 318

Query: 193 LRVV-DGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITL 251
             ++ + ++  D   Y +L++G+ +   + +A +    M IE+G   +            
Sbjct: 319 FELLKEKKLVADQHMYGVLMDGYCRTGQIRDAVRVHDNM-IEIGVRTNTTI--------- 368

Query: 252 LKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRP 311
                                CN  +  +      C +GQ L  AE I+  M      +P
Sbjct: 369 ---------------------CNSLINGY------CKSGQ-LVEAEQIFSRM-NDWSLKP 399

Query: 312 DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLF 371
           D H YN ++  YC +     A+KL D+M      P + TYNIL +   +     +   L+
Sbjct: 400 DHHTYNTLVDGYCRAGYVDEALKLCDQMCQKEVVPTVMTYNILLKGYSRIGAFHDVLSLW 459

Query: 372 NEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDM 431
             M+K     +  +C   +       D   A+K W+ ++       + T N++++GLC M
Sbjct: 460 KMMLKRGVNADEISCSTLLEALFKLGDFNEAMKLWENVLARGLLTDTITLNVMISGLCKM 519

Query: 432 HMLPEA 437
             + EA
Sbjct: 520 EKVNEA 525



 Score = 40.0 bits (92), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 25/100 (25%), Positives = 42/100 (42%)

Query: 275 PGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMK 334
           P    + +A         L  A  ++  ++    F PD + Y ++I     + +   A  
Sbjct: 717 PNNIVYNVAIAGLCKAGKLEDARKLFSDLLSSDRFIPDEYTYTILIHGCAIAGDINKAFT 776

Query: 335 LLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
           L DEM   G  P+I TYN L + L K   +  A  L +++
Sbjct: 777 LRDEMALKGIIPNIVTYNALIKGLCKLGNVDRAQRLLHKL 816


>gi|449455469|ref|XP_004145475.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g19890-like [Cucumis sativus]
          Length = 728

 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 89/341 (26%), Positives = 152/341 (44%), Gaps = 20/341 (5%)

Query: 119 AMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLS 178
           A+W   K  K     +L  ++S+ S       VK A    + M + G K +V+   SL+ 
Sbjct: 298 AVWFFHKVTKMGLSPNLINYSSMISGLCKRGSVKQAFELLEEMVKNGWKPNVYTHTSLIH 357

Query: 179 AICRDGKTIDAWQ-FLRVVDG-RIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGW 236
            +C+ G T  A++ FL+++     KP+  TY  ++ G+ KE  ++ A     EM+ E   
Sbjct: 358 GLCKKGWTERAFRLFLKLIRSDNYKPNVHTYTAMISGYCKEEKLSRA-----EMLFERMK 412

Query: 237 DPDNVPAYDSYLITLLKGCDGIYETVNSLK--RMMERGCNPGMTFFKLAFEECLTGQNLR 294
           +   VP  ++Y  TL+   DG  +  N  K   +ME   N G       +   + G   R
Sbjct: 413 EQGLVPNTNTY-TTLI---DGHCKAGNFSKAYELMELMSNEGFFPNTCTYNSIVDGLCKR 468

Query: 295 G-AEFIWGAMVGRIGFR----PDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQ 349
           G AE  +  +    GF+     D   Y ++IS  C   +   A+  L++M   G  PDI 
Sbjct: 469 GRAEEAFKLL--NTGFQNQIEADGVTYTILISEQCKRADMNQALVFLNKMFKVGFQPDIH 526

Query: 350 TYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYM 409
            Y  L     +   + ++  LF+E++K       E   + +  Y       +A+KF++ M
Sbjct: 527 LYTTLIAAFCRQNMMKDSEKLFDEVIKLGLAPTKETYTSMICGYCREKKVSLAVKFFQKM 586

Query: 410 IENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQ 450
            ++ C+  S +   L++GLC    L EA +    M +KG+ 
Sbjct: 587 SDHGCAPDSISYGALISGLCKESRLDEARQLYDTMIDKGLS 627



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 74/335 (22%), Positives = 135/335 (40%), Gaps = 14/335 (4%)

Query: 151 VKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAI 209
           V+ A   FD M   G   D      ++   CR+G  ++A +++  +++     DN T  +
Sbjct: 225 VEYAGNVFDEMSARGVYPDSCTYKYIIVGYCRNGNVLEADRWICEMMERGFVVDNATLTL 284

Query: 210 LLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMM 269
           ++  +  E+ + N    F   V ++G  P N+  Y S +  L K    + +    L+ M+
Sbjct: 285 IITAF-CEKSLVNRAVWFFHKVTKMGLSP-NLINYSSMISGLCKR-GSVKQAFELLEEMV 341

Query: 270 ERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNE 328
           + G  P + T   L    C  G   R    ++  ++    ++P+ H Y  MIS YC   +
Sbjct: 342 KNGWKPNVYTHTSLIHGLCKKGWTERAFR-LFLKLIRSDNYKPNVHTYTAMISGYCKEEK 400

Query: 329 TGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVL-NHENCR 387
              A  L + M   G  P+  TY  L +   K     +A  L  E++ NE    N     
Sbjct: 401 LSRAEMLFERMKEQGLVPNTNTYTTLIDGHCKAGNFSKAYELM-ELMSNEGFFPNTCTYN 459

Query: 388 AAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEK 447
           + V           A K      +N       T  +L++  C    + +A+ +   M + 
Sbjct: 460 SIVDGLCKRGRAEEAFKLLNTGFQNQIEADGVTYTILISEQCKRADMNQALVFLNKMFKV 519

Query: 448 GIQ-----VTPFALSKLKQILIKARKEAVYEELLK 477
           G Q      T    +  +Q ++K   E +++E++K
Sbjct: 520 GFQPDIHLYTTLIAAFCRQNMMK-DSEKLFDEVIK 553


>gi|125548610|gb|EAY94432.1| hypothetical protein OsI_16202 [Oryza sativa Indica Group]
 gi|125590647|gb|EAZ30997.1| hypothetical protein OsJ_15079 [Oryza sativa Japonica Group]
          Length = 485

 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 78/317 (24%), Positives = 127/317 (40%), Gaps = 11/317 (3%)

Query: 138 FASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL--RV 195
           F  +    V    +  A   FD M+  G +  V + N+++S +CR G  +D  + L  R+
Sbjct: 119 FNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCRAGD-LDGAETLHRRM 177

Query: 196 VDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
            +  + PD  TY  L++G  +   + +A+  F +M    G  P+ V     + I +   C
Sbjct: 178 SEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGR-GMKPNAV----VFTILIDAHC 232

Query: 256 D-GIYETVNSLKR-MMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDT 313
             G  ET+  L R M ERG  P    +          ++L+ A  I   M    G RPDT
Sbjct: 233 KKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRS-AGLRPDT 291

Query: 314 HMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNE 373
             Y  +I  YC   E   AM++   MV  G   D  TY  L   L K  +  +A  +  E
Sbjct: 292 VTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAERVLGE 351

Query: 374 MVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHM 433
           M++     ++      +  +    D    ++  K M          T N+++ G C +  
Sbjct: 352 MMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNVIMNGFCKLGQ 411

Query: 434 LPEAVKYAKGMAEKGIQ 450
           +  A      M   G+ 
Sbjct: 412 MKNADMLLNAMINIGVS 428



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 105/247 (42%), Gaps = 19/247 (7%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           T+ ++        R++DA   F+ M   G K +      L+ A C+ G      +  R +
Sbjct: 188 TYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILIDAHCKKGDAETMLELHREM 247

Query: 197 DGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
             R ++PD  TY  ++ G  + RD+ +A     EM    G  PD V    +Y  TL+ G 
Sbjct: 248 RERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMR-SAGLRPDTV----TY-TTLIDG- 300

Query: 256 DGIYETVNSLKRMMERGCN---PGMTFFKLAFEECLTGQNLRG----AEFIWGAMVGRIG 308
              Y     L   ME   N    G+   ++ +   ++G +  G    AE + G M+   G
Sbjct: 301 ---YCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAERVLGEMM-EAG 356

Query: 309 FRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEAS 368
             PD   Y M+I  +C   +    ++LL EM   G  P + TYN++     K  ++  A 
Sbjct: 357 LEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNVIMNGFCKLGQMKNAD 416

Query: 369 GLFNEMV 375
            L N M+
Sbjct: 417 MLLNAMI 423


>gi|34015232|gb|AAQ56425.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|34015270|gb|AAQ56462.1| putative fertility restorer [Oryza sativa Japonica Group]
          Length = 1007

 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 82/316 (25%), Positives = 139/316 (43%), Gaps = 23/316 (7%)

Query: 157 TFDVMEQY------GCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYAI 209
           T  VM++Y      G + ++   N++++A+C+DG   DA   ++ V +  + PD  TY  
Sbjct: 196 TAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTS 255

Query: 210 LLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG-CDG--IYETVNSLK 266
           ++ G  ++ D+ +A + F +M  E G +P+ V  Y     TL+ G CD   + E  + ++
Sbjct: 256 MILGHCRKHDLDSALQVFNQMAKE-GCEPNTV-TYS----TLINGLCDSGRVNEAFDLIR 309

Query: 267 RMMERGCNP-GMTFFKLAFEECLTGQNLRGAEFIWGAMVG--RIGFRPDTHMYNMMISLY 323
            M+  G  P   T        C  G      E  W   V     G  P+ + Y  +IS  
Sbjct: 310 EMILHGILPTAHTCTGPIIALCDMG----CYEDAWRLFVDMKNKGCEPNVYTYTALISGL 365

Query: 324 CYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNH 383
           C S     A+ L   M  +G FP+  TYN L   LV+ R++  A  + N M +N    N 
Sbjct: 366 CVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNI 425

Query: 384 ENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKG 443
                 ++ Y    DP  A+     M++   S    T N ++ G CD      A++    
Sbjct: 426 VTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDL 485

Query: 444 MAEKGIQVTPFALSKL 459
           M + G +   ++ ++L
Sbjct: 486 MRDGGCKPDEWSYTEL 501



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 88/336 (26%), Positives = 143/336 (42%), Gaps = 8/336 (2%)

Query: 117 FDAMWDAIKSMKKENV-LSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNS 175
            D+       M KE    +  T++++ +    + RV +A      M  +G          
Sbjct: 266 LDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTG 325

Query: 176 LLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEV 234
            + A+C  G   DAW+ F+ + +   +P+  TY  L+ G      +  A   F  M  + 
Sbjct: 326 PIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRD- 384

Query: 235 GWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGM-TFFKLAFEECLTGQNL 293
           G  P+ V  Y++ LI +L     I      L  M   GC+P + T+ ++    C+ G + 
Sbjct: 385 GVFPNTV-TYNA-LINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILG-DP 441

Query: 294 RGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNI 353
           + A  +   M+ R G   +   YN +I  YC S  T +A+++LD M   G  PD  +Y  
Sbjct: 442 KKAMLVMNNMLQR-GHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTE 500

Query: 354 LFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENH 413
           L     K  K+  A GLFNEMV +    N     A +  Y   +    A    ++M  + 
Sbjct: 501 LICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSG 560

Query: 414 CSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
           C    +T N+L+ GL   +    A +  K M E+GI
Sbjct: 561 CRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGI 596



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 69/311 (22%), Positives = 121/311 (38%), Gaps = 43/311 (13%)

Query: 104 WNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVME 162
           +N ++++L +N      +  +  M +     ++ T+  +   Y +    K A+   + M 
Sbjct: 393 YNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNML 452

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV-DGRIKPDNDTYAILLEGWEKERDVA 221
           Q G   ++   N+++   C  G T  A + L ++ DG  KPD  +Y  L+ G+ K   + 
Sbjct: 453 QRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKME 512

Query: 222 NAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMER-GCNPGMTFF 280
           +A   F EMV + G  P+ V  Y + +    K  D   +T  SL   M+R GC P +  +
Sbjct: 513 SAFGLFNEMVDD-GLCPNEV-TYTALIDGYCK--DEKLDTATSLLEHMKRSGCRPNVQTY 568

Query: 281 KLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMV 340
            +         N  GAE +   M+   G  P+   Y  MI   C +  T  A+++ ++M+
Sbjct: 569 NVLIHGLTKQNNFSGAEELCKVMIEE-GIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMI 627

Query: 341 YNGAFP-----------------------------------DIQTYNILFEFLVKGRKLW 365
             G  P                                   D  TY  + E  +   K+ 
Sbjct: 628 EQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKVE 687

Query: 366 EASGLFNEMVK 376
            A      M+K
Sbjct: 688 HAFNFLGRMIK 698



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 61/279 (21%), Positives = 111/279 (39%), Gaps = 45/279 (16%)

Query: 127 MKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICR---- 182
           +++ +  +L T+ ++   Y  +     A+   D+M   GCK D ++   L+   C+    
Sbjct: 452 LQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKM 511

Query: 183 ------------DGKTIDAWQFLRVVDGRIK--------------------PDNDTYAIL 210
                       DG   +   +  ++DG  K                    P+  TY +L
Sbjct: 512 ESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVL 571

Query: 211 LEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMME 270
           + G  K+ + + A++   +++IE G  P NV  Y + +  L K        +    +M+E
Sbjct: 572 IHGLTKQNNFSGAEE-LCKVMIEEGIFP-NVVTYTAMIDGLCKN-GSTSLALEMFNKMIE 628

Query: 271 RGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETG 330
           +GC P +  +            +  AE ++ A + R G  PD   Y  MI  Y  S +  
Sbjct: 629 QGCLPNLLTYSSLIRALGQEGKVEEAENLF-AELERHGLIPDEITYVKMIEAYIMSGKVE 687

Query: 331 AAMKLLDEMVYNGAFPDIQTYNILF-----EFLVKGRKL 364
            A   L  M+  G  P + TY +L      E+L+  ++L
Sbjct: 688 HAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYLLADQRL 726



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 54/227 (23%), Positives = 91/227 (40%), Gaps = 4/227 (1%)

Query: 243 AYDSYLITLLKGCDGIYETV-NSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWG 301
           AY + LI L +   G+   V +   RM+  G  P +  +           N+  AE I  
Sbjct: 182 AYSALLIHLSR--LGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMK 239

Query: 302 AMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKG 361
             V      PDT  Y  MI  +C  ++  +A+++ ++M   G  P+  TY+ L   L   
Sbjct: 240 K-VFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDS 298

Query: 362 RKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETG 421
            ++ EA  L  EM+ +  +     C   +    D      A + +  M    C     T 
Sbjct: 299 GRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTY 358

Query: 422 NLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARK 468
             L++GLC   +L  A+     M+  G+       + L  IL++ R+
Sbjct: 359 TALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRR 405



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 55/239 (23%), Positives = 96/239 (40%), Gaps = 27/239 (11%)

Query: 160 VMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKER 218
           VM + G   +V    +++  +C++G T  A + F ++++    P+  TY+ L+    +E 
Sbjct: 590 VMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEG 649

Query: 219 DVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNP--- 275
            V  A+  F E+    G  PD +         ++ G   +    N L RM++ GC P   
Sbjct: 650 KVEEAENLFAELERH-GLIPDEITYVKMIEAYIMSG--KVEHAFNFLGRMIKAGCQPTLW 706

Query: 276 --GMTFFKLAFEECLTGQNL------------------RGAEFIWGAMVGRIGFRPDTHM 315
             G+    L  E  L  Q L                  + A  +  A +  +       +
Sbjct: 707 TYGVLIKGLKNEYLLADQRLAALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDPGLSVQV 766

Query: 316 YNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
            N ++S    +     A +LL  M+  G  PD + YN L   L++ R +  A G+F  M
Sbjct: 767 QNALVSNLSTAGRWFEANELLGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHM 825


>gi|115482834|ref|NP_001065010.1| Os10g0506000 [Oryza sativa Japonica Group]
 gi|31432949|gb|AAP54520.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|62733610|gb|AAX95727.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|113639619|dbj|BAF26924.1| Os10g0506000 [Oryza sativa Japonica Group]
 gi|125575336|gb|EAZ16620.1| hypothetical protein OsJ_32092 [Oryza sativa Japonica Group]
          Length = 507

 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 79/319 (24%), Positives = 136/319 (42%), Gaps = 15/319 (4%)

Query: 45  IIANTPSPTVEDVLDKTLIRVSQETVEQVL-KFSYS--------HPGPAVKFFRWSAYQL 95
           ++ + P       LD+   RVS   V +VL KF  S        +P  A KFF W+  Q 
Sbjct: 117 LLQDGPGFNTRQALDEMRPRVSNALVREVLLKFVVSIDGVNRARYPRLAYKFFLWAEEQE 176

Query: 96  NDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASVFSSYVVADRVKDA 154
             +H    +NL++ +  +     AMW  ++ M  + + +S  TF  +  +   A   +  
Sbjct: 177 GYRHGTSMYNLILKIFAECGELKAMWRLLEDMTDKGLPVSSRTFHLLVCTSGRAGLRRRL 236

Query: 155 ITTFDVMEQYGCKHDVFALNSLLSAICR-DGKTIDAWQFLRVVDGRIKPDNDTYAILLEG 213
           +  F     +  +    + N++L  +   +  ++  W   +++     PD  TY +++  
Sbjct: 237 VERFIKSSNFNYRPFRNSFNAILHTLLTIEQYSLIEWVHQKMIAEGHSPDVLTYNVVMRA 296

Query: 214 WEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGC 273
               R +    K   EM  + G  PD +  Y+  L  L KG D     +N L  M + GC
Sbjct: 297 KYMLRKLDQFHKLLDEMG-KNGLAPD-LYTYNLLLHVLGKG-DKPLAALNLLNYMSDVGC 353

Query: 274 NPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAM 333
            P +  F    +      NL   ++ +  MV + G +PD   Y +MI+ Y  + E   A 
Sbjct: 354 VPTVLHFTNLIDGLSRAGNLEACKYFFDEMVKK-GCQPDVVCYTVMITGYVAAGEFDEAQ 412

Query: 334 KLLDEMVYNGAFPDIQTYN 352
           K  D+M+  G  P++ TYN
Sbjct: 413 KFFDDMLLRGQLPNVYTYN 431



 Score = 45.8 bits (107), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 71/174 (40%), Gaps = 14/174 (8%)

Query: 304 VGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRK 363
           +G+ G  PD + YN+++ +    ++  AA+ LL+ M   G  P +  +  L + L +   
Sbjct: 313 MGKNGLAPDLYTYNLLLHVLGKGDKPLAALNLLNYMSDVGCVPTVLHFTNLIDGLSRAGN 372

Query: 364 LWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAI-------KFWKYMIENHCSD 416
           L      F+EMVK       + C+  V  Y      YVA        KF+  M+      
Sbjct: 373 LEACKYFFDEMVK-------KGCQPDVVCYTVMITGYVAAGEFDEAQKFFDDMLLRGQLP 425

Query: 417 LSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEA 470
              T N ++ GLC +    +A    K M  +G        S L   L  A K++
Sbjct: 426 NVYTYNSMICGLCIVGEFDKACSLLKDMESRGCTPNFTVYSTLVSRLRNAGKDS 479



 Score = 45.4 bits (106), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 43/100 (43%), Gaps = 1/100 (1%)

Query: 275 PGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMK 334
           P    F       LT +     E++   M+   G  PD   YN+++       +     K
Sbjct: 250 PFRNSFNAILHTLLTIEQYSLIEWVHQKMIAE-GHSPDVLTYNVVMRAKYMLRKLDQFHK 308

Query: 335 LLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
           LLDEM  NG  PD+ TYN+L   L KG K   A  L N M
Sbjct: 309 LLDEMGKNGLAPDLYTYNLLLHVLGKGDKPLAALNLLNYM 348



 Score = 43.9 bits (102), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 80/190 (42%), Gaps = 11/190 (5%)

Query: 97  DKHSPYAWNLVVDLLGKNCL--FDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKD 153
           + HSP      V +  K  L   D     +  M K  +   L T+  +       D+   
Sbjct: 281 EGHSPDVLTYNVVMRAKYMLRKLDQFHKLLDEMGKNGLAPDLYTYNLLLHVLGKGDKPLA 340

Query: 154 AITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL--RVVDGRIKPDNDTYAILL 211
           A+   + M   GC   V    +L+  + R G  ++A ++    +V    +PD   Y +++
Sbjct: 341 ALNLLNYMSDVGCVPTVLHFTNLIDGLSRAG-NLEACKYFFDEMVKKGCQPDVVCYTVMI 399

Query: 212 EGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMME- 270
            G+    +   A+K F +M++  G  P NV  Y+S +  L     G ++   SL + ME 
Sbjct: 400 TGYVAAGEFDEAQKFFDDMLLR-GQLP-NVYTYNSMICGLC--IVGEFDKACSLLKDMES 455

Query: 271 RGCNPGMTFF 280
           RGC P  T +
Sbjct: 456 RGCTPNFTVY 465



 Score = 38.5 bits (88), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 33/142 (23%), Positives = 54/142 (38%)

Query: 309 FRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEAS 368
           +RP  + +N ++       +      +  +M+  G  PD+ TYN++       RKL +  
Sbjct: 248 YRPFRNSFNAILHTLLTIEQYSLIEWVHQKMIAEGHSPDVLTYNVVMRAKYMLRKLDQFH 307

Query: 369 GLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGL 428
            L +EM KN    +       + V    D P  A+    YM +  C         L+ GL
Sbjct: 308 KLLDEMGKNGLAPDLYTYNLLLHVLGKGDKPLAALNLLNYMSDVGCVPTVLHFTNLIDGL 367

Query: 429 CDMHMLPEAVKYAKGMAEKGIQ 450
                L     +   M +KG Q
Sbjct: 368 SRAGNLEACKYFFDEMVKKGCQ 389


>gi|357125354|ref|XP_003564359.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 665

 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 80/351 (22%), Positives = 146/351 (41%), Gaps = 21/351 (5%)

Query: 139 ASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDG 198
           +S     +  D + +A    +     G   DV+    L+  +CR G+T DA + LR  +G
Sbjct: 39  SSRLRRLIARDDLAEAARLVERSTSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRTAEG 98

Query: 199 RIKP-DNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLIT-LLKG-C 255
              P D   Y  L+ G+ +   +  A++    M          VP  D+Y  T L++G C
Sbjct: 99  SGAPVDVFAYNTLVAGYCRYGRLDAARRLIASM---------PVPP-DAYTYTPLIRGLC 148

Query: 256 DG--IYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDT 313
           D   + + ++ L  M+ R C P +  + +  E          A  +   M  + G  P+ 
Sbjct: 149 DRGRVGDALSLLDDMLRRECQPSVVTYTVLLEAVCKSSGFGQAMKVLDEMRAK-GCTPNI 207

Query: 314 HMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNE 373
             YN++I+  C  +    A ++L+ +   G  PD  +Y  + + L   ++  +   LF E
Sbjct: 208 VTYNVIINGMCREDRVDDARQILNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEVLFCE 267

Query: 374 MVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHM 433
           MV+N  V N       VR +        AI+    M E+ C+  +   N+++  +C    
Sbjct: 268 MVENNCVPNEVTFDMLVRFFCRGGMVERAIEVLDRMSEHGCTANTTLCNIVINSICKQGR 327

Query: 434 LPEAVKYAKGMAEKGIQVTPFALSKLKQILIKA-----RKEAVYEELLKKC 479
           + +A ++   M   G      + + + + L +A      KE + E + K C
Sbjct: 328 VDDAFEFLNNMGSYGCSPDTISYTTVLKGLCRAGRWEDAKELLNEMVRKNC 378



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 76/339 (22%), Positives = 144/339 (42%), Gaps = 47/339 (13%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           TF  +   +     V+ AI   D M ++GC  +    N ++++IC+ G+  DA++FL  +
Sbjct: 279 TFDMLVRFFCRGGMVERAIEVLDRMSEHGCTANTTLCNIVINSICKQGRVDDAFEFLNNM 338

Query: 197 DG-RIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL-KG 254
                 PD  +Y  +L+G  +     +AK+   EMV +    P N   +++++  L  KG
Sbjct: 339 GSYGCSPDTISYTTVLKGLCRAGRWEDAKELLNEMVRKNC--PPNEVTFNTFICILCQKG 396

Query: 255 CDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTH 314
              I + +  +++M E GC+ G+                                     
Sbjct: 397 L--IDQAILLIEQMPEYGCSVGIV------------------------------------ 418

Query: 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
            YN +++ +C      +A++L + +      P+  TY  L   L    +L  A+ L  EM
Sbjct: 419 TYNALVNGFCVQGRVDSALELFNSLPCE---PNTITYTTLLTGLCHAERLDAAAELLAEM 475

Query: 375 VKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHML 434
           ++N+  LN       V  +        AI+  + M+E+ C+    T N L+ G+ +    
Sbjct: 476 MQNDCPLNVVTFNVLVSFFCQKGFVEEAIELVQQMMEHGCTPNLITFNTLLDGITEDCNS 535

Query: 435 PEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYE 473
            EA++   G+  KGI +     S +  +L  +R++ + E
Sbjct: 536 EEALELLHGLVSKGISLDTITYSSIVDVL--SREDRIEE 572



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 89/382 (23%), Positives = 151/382 (39%), Gaps = 49/382 (12%)

Query: 106 LVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYG 165
           L+  L  +  + DA+      +++E   S+ T+  +  +   +     A+   D M   G
Sbjct: 143 LIRGLCDRGRVGDALSLLDDMLRRECQPSVVTYTVLLEAVCKSSGFGQAMKVLDEMRAKG 202

Query: 166 CKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERDVANAK 224
           C  ++   N +++ +CR+ +  DA Q L R+     +PD  +Y  +L+G    +   + +
Sbjct: 203 CTPNIVTYNVIINGMCREDRVDDARQILNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVE 262

Query: 225 KTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYE-TVNSLKRMMERGCNPGMTFFKLA 283
             F EMV E    P+ V  +D  +    +G  G+ E  +  L RM E GC    T   + 
Sbjct: 263 VLFCEMV-ENNCVPNEV-TFDMLVRFFCRG--GMVERAIEVLDRMSEHGCTANTTLCNIV 318

Query: 284 FEE-CLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYN 342
               C  G+     EF+    +G  G  PDT  Y  ++   C +     A +LL+EMV  
Sbjct: 319 INSICKQGRVDDAFEFLNN--MGSYGCSPDTISYTTVLKGLCRAGRWEDAKELLNEMVRK 376

Query: 343 GAFPD-----------------------------------IQTYNILFE-FLVKGRKLWE 366
              P+                                   I TYN L   F V+GR +  
Sbjct: 377 NCPPNEVTFNTFICILCQKGLIDQAILLIEQMPEYGCSVGIVTYNALVNGFCVQGR-VDS 435

Query: 367 ASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVA 426
           A  LFN +    N + +      +     ++    A +    M++N C     T N+LV+
Sbjct: 436 ALELFNSLPCEPNTITYTTLLTGL---CHAERLDAAAELLAEMMQNDCPLNVVTFNVLVS 492

Query: 427 GLCDMHMLPEAVKYAKGMAEKG 448
             C    + EA++  + M E G
Sbjct: 493 FFCQKGFVEEAIELVQQMMEHG 514



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 67/281 (23%), Positives = 110/281 (39%), Gaps = 48/281 (17%)

Query: 131 NVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAW 190
           N ++  TF  +     + D+   AI   + M +YGC   +   N+L++  C  G+   A 
Sbjct: 381 NEVTFNTFICILCQKGLIDQ---AILLIEQMPEYGCSVGIVTYNALVNGFCVQGRVDSAL 437

Query: 191 QFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLIT 250
           +    +    +P+  TY  LL G      +  A +   EM+      P NV  ++  L++
Sbjct: 438 ELFNSLP--CEPNTITYTTLLTGLCHAERLDAAAELLAEMM--QNDCPLNVVTFN-VLVS 492

Query: 251 LLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAF----EECLTGQNLRGAEFIWGAM--- 303
                  + E +  +++MME GC P +  F        E+C + + L   E + G +   
Sbjct: 493 FFCQKGFVEEAIELVQQMMEHGCTPNLITFNTLLDGITEDCNSEEAL---ELLHGLVSKG 549

Query: 304 ------------------------------VGRIGFRPDTHMYNMMISLYCYSNETGAAM 333
                                         V  +G RP   MYN ++S  C   ET  A+
Sbjct: 550 ISLDTITYSSIVDVLSREDRIEEAVQMFHAVQDMGMRPKAVMYNKILSALCKRCETDRAI 609

Query: 334 KLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
                MV N   P+  TY IL E L +   L EA  + +E+
Sbjct: 610 DFFAHMVSNSCMPNESTYVILIEGLAREGLLKEARYVLSEL 650


>gi|449524916|ref|XP_004169467.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g74580-like [Cucumis
           sativus]
          Length = 877

 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 85/358 (23%), Positives = 153/358 (42%), Gaps = 51/358 (14%)

Query: 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDV 160
           + +N+ +  L +    D     ++S+  E +   + ++ ++   +    ++ +A      
Sbjct: 252 FTFNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHK 311

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR--VVDGRIKPDNDTYAILLEGWEKER 218
           M   G + + F  N++++  C+ G   +A + LR  +  G I PD  TY+ L+ G   + 
Sbjct: 312 MVNSGVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFI-PDEFTYSSLINGLCNDG 370

Query: 219 DVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDG---IYETVNSLKRMMERGCNP 275
           D+  A   F E  +E G+   ++  Y+    TL+KG      + + +  +K MME GC+P
Sbjct: 371 DMNRAMAVFYE-AMEKGF-KHSIILYN----TLVKGLSKQGLVLQALQLMKDMMEHGCSP 424

Query: 276 GMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKL 335
            +  + L          L  A  I    + + G  PD   +N +I  YC       A+++
Sbjct: 425 DIWTYNLVVNGLCKMGCLSDANGILNDAIAK-GCIPDIFTFNTLIDGYCKQRNMDKAIEI 483

Query: 336 LDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMD 395
           LD M+ +G  PD+ TYN L   L K RKL             +NV++             
Sbjct: 484 LDTMLSHGITPDVITYNTLLNGLCKARKL-------------DNVVDT------------ 518

Query: 396 SDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTP 453
                     +K M+E  C+    T N+L+   C    + EA++  K M  +G+  TP
Sbjct: 519 ----------FKAMLEKGCTPNIITYNILIESFCKDRKVSEAMELFKEMKTRGL--TP 564



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 82/288 (28%), Positives = 123/288 (42%), Gaps = 19/288 (6%)

Query: 100 SPYAW--NLVVDLLGK-NCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAIT 156
           SP  W  NLVV+ L K  CL DA      ++ K  +  + TF ++   Y     +  AI 
Sbjct: 423 SPDIWTYNLVVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIE 482

Query: 157 TFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWE 215
             D M  +G   DV   N+LL+ +C+  K  +    F  +++    P+  TY IL+E + 
Sbjct: 483 ILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFC 542

Query: 216 KERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC------DGIYETVNSLKRMM 269
           K+R V+ A + F EM    G  PD V      L TL+ G       D  YE   ++++  
Sbjct: 543 KDRKVSEAMELFKEMKTR-GLTPDIVT-----LCTLICGLCSNGELDKAYELFVTIEK-- 594

Query: 270 ERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNET 329
           E   +     F +         N+  AE ++  M G     PD + Y +MI  YC +   
Sbjct: 595 EYKFSYSTAIFNIMINAFCXKLNVSMAEKLFHKMGGS-DCAPDNYTYRVMIDSYCKTGNI 653

Query: 330 GAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKN 377
             A   L E +  G  P   T   +   L    +L EA  + N MV+N
Sbjct: 654 DLAHTFLLENISKGLVPSFTTCGKVLNCLCVTHRLSEAVVIINLMVQN 701



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 89/373 (23%), Positives = 156/373 (41%), Gaps = 11/373 (2%)

Query: 113 KNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVF 171
           +NC  +A +     M K+ +   + TF  +         V+++   F  + + G   ++F
Sbjct: 194 ENCQIEA-YHLFDEMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLF 252

Query: 172 ALNSLLSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEM 230
             N  +  +CR G   +A + L  +V   + PD  +Y  L+ G+ K   +  A+    +M
Sbjct: 253 TFNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKM 312

Query: 231 VIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKR-MMERGCNPG-MTFFKLAFEECL 288
           V   G +P N   Y++ +    K   G+ +  + + R  M +G  P   T+  L    C 
Sbjct: 313 V-NSGVEP-NEFTYNTIINGFCKA--GMMQNADKILRDAMFKGFIPDEFTYSSLINGLCN 368

Query: 289 TGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDI 348
            G   R     + AM    GF+    +YN ++           A++L+ +M+ +G  PDI
Sbjct: 369 DGDMNRAMAVFYEAM--EKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDI 426

Query: 349 QTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKY 408
            TYN++   L K   L +A+G+ N+ +    + +       +  Y    +   AI+    
Sbjct: 427 WTYNLVVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDT 486

Query: 409 MIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARK 468
           M+ +  +    T N L+ GLC    L   V   K M EKG        + L +   K RK
Sbjct: 487 MLSHGITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRK 546

Query: 469 EAVYEELLKKCKA 481
            +   EL K+ K 
Sbjct: 547 VSEAMELFKEMKT 559



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 102/486 (20%), Positives = 189/486 (38%), Gaps = 78/486 (16%)

Query: 70  VEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKK 129
           V  V+++  + P  A+K F     +   KH+   +  +++ LG +  F+AM D +  M+K
Sbjct: 10  VAAVIRYQ-NDPLNALKMFNQVKTEDGFKHTLETYKCMIEKLGLHGKFEAMEDVLAEMRK 68

Query: 130 --ENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTI 187
             ++ +    +  +   Y    +V++A+  F+ M+ Y C+  V + N++++ +   G   
Sbjct: 69  NVDSKMLEGVYIGIMRDYGRKGKVQEAVNVFERMDFYDCEPSVQSYNAIMNILVEYGYFS 128

Query: 188 DAWQ-FLRVVDGRIKPDNDTYAI-----------------------------------LL 211
            A + ++R+ D  I PD  T+ I                                   ++
Sbjct: 129 QAHKVYMRMKDIGIYPDVYTHTIRMKSFCITGRPTAALRLLNNMPGQGCEFNAVSYCAVI 188

Query: 212 EGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMER 271
            G+ KE     A   F EM ++ G  PD +  ++  +  L K    + E+     ++M+R
Sbjct: 189 SGFYKENCQIEAYHLFDEM-LKQGICPD-ILTFNKLIHVLCKK-GNVQESEKLFSKVMKR 245

Query: 272 GCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGA 331
           G  P +  F +  +       +  A  +  ++V   G  PD   YN +I  +C  ++   
Sbjct: 246 GVCPNLFTFNIFIQGLCRKGAIDEAARLLESIVSE-GLTPDVISYNTLICGFCKHSKLVE 304

Query: 332 AMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEAS-----GLFNEMVKNE-------- 378
           A   L +MV +G  P+  TYN +     K   +  A       +F   + +E        
Sbjct: 305 AECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLIN 364

Query: 379 NVLNHENCRAAVRVYMDSDDP----------------------YVAIKFWKYMIENHCSD 416
            + N  +   A+ V+ ++ +                         A++  K M+E+ CS 
Sbjct: 365 GLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSP 424

Query: 417 LSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELL 476
              T NL+V GLC M  L +A         KG     F  + L     K R      E+L
Sbjct: 425 DIWTYNLVVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEIL 484

Query: 477 KKCKAH 482
               +H
Sbjct: 485 DTMLSH 490



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 87/366 (23%), Positives = 153/366 (41%), Gaps = 14/366 (3%)

Query: 119 AMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLS 178
           AM    ++M+K    S+  + ++         V  A+     M ++GC  D++  N +++
Sbjct: 375 AMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVN 434

Query: 179 AICRDGKTIDAWQFLR--VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGW 236
            +C+ G   DA   L   +  G I PD  T+  L++G+ K+R++  A +    M+   G 
Sbjct: 435 GLCKMGCLSDANGILNDAIAKGCI-PDIFTFNTLIDGYCKQRNMDKAIEILDTMLSH-GI 492

Query: 237 DPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGA 296
            PD V  Y++ L  L K    +   V++ K M+E+GC P +  + +  E     + +  A
Sbjct: 493 TPD-VITYNTLLNGLCKA-RKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEA 550

Query: 297 EFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFP-DIQTYNILF 355
             ++  M  R G  PD      +I   C + E   A +L   +     F      +NI+ 
Sbjct: 551 MELFKEMKTR-GLTPDIVTLCTLICGLCSNGELDKAYELFVTIEKEYKFSYSTAIFNIMI 609

Query: 356 EFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCS 415
                   +  A  LF++M  ++   ++   R  +  Y  + +  +A  F    I     
Sbjct: 610 NAFCXKLNVSMAEKLFHKMGGSDCAPDNYTYRVMIDSYCKTGNIDLAHTFLLENISKGLV 669

Query: 416 DLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI---QVTPFALSKLKQILIKARKEAVY 472
               T   ++  LC  H L EAV     M + GI   +V     +  K++   A  + V 
Sbjct: 670 PSFTTCGKVLNCLCVTHRLSEAVVIINLMVQNGIVPEEVNSIFEADKKEV---AAPKIVV 726

Query: 473 EELLKK 478
           E LLKK
Sbjct: 727 EYLLKK 732


>gi|242086476|ref|XP_002443663.1| hypothetical protein SORBIDRAFT_08g023090 [Sorghum bicolor]
 gi|241944356|gb|EES17501.1| hypothetical protein SORBIDRAFT_08g023090 [Sorghum bicolor]
          Length = 853

 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 80/328 (24%), Positives = 146/328 (44%), Gaps = 10/328 (3%)

Query: 51  SPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDL 110
            P  E VLD    ++      QVLK  + H   A+ FF+W   Q   KH  + +  ++ +
Sbjct: 311 GPMTEHVLDNLHCKIDAFQANQVLKLLHDHT-VALGFFQWLKRQPGFKHDGHTYTTMIGI 369

Query: 111 LGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHD 169
           LG+   F  +   +  M + +   ++ T+  +  +Y  A+ +K+A+  F+ M++ G + D
Sbjct: 370 LGQARQFGVLKKLLDEMSRAHCKPTVVTYNRIIHAYGRANYLKEAVKVFEEMQEAGYEPD 429

Query: 170 VFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFG 228
                +L+    + G    A   + R+ +  + PD  TY+ ++    K   +A A K F 
Sbjct: 430 RVTYCTLIDIHAKAGYLDIAMDLYGRMQEVGLSPDTFTYSAMVNCLGKGGQLAAAYKLFC 489

Query: 229 EMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSL-KRMMERGCNPGMTFFKLAFEEC 287
           EM IE G  P N+  Y+  ++  L+     YE V  L K M   G  P    + +  E  
Sbjct: 490 EM-IENGCTP-NLVTYN--IMIALQAKARNYENVVKLYKDMQVAGFRPDKITYSIVMEVL 545

Query: 288 LTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPD 347
               +L  AE ++  M  R  + PD  +Y +++ L+  +     A+     M+ +G  P+
Sbjct: 546 GHCGHLDEAEAVFIEM--RRDWAPDEPVYGLLVDLWGKAGNVDKALGWYQAMLQDGLQPN 603

Query: 348 IQTYNILFEFLVKGRKLWEASGLFNEMV 375
           + T N L    +K  +  +A  +   M+
Sbjct: 604 VPTCNSLLSAFLKMNRFQDAYIVLQNML 631



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 63/246 (25%), Positives = 100/246 (40%), Gaps = 5/246 (2%)

Query: 129 KENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTID 188
           + ++ SL +  SV   Y    ++K    T  V++   CK D F  N +L  +      + 
Sbjct: 286 QSSLRSLKSLRSVEQYYHTLQQMKWGPMTEHVLDNLHCKIDAFQANQVLKLLHDHTVALG 345

Query: 189 AWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYL 248
            +Q+L+   G  K D  TY  ++    + R     KK   EM       P  V  Y+  +
Sbjct: 346 FFQWLKRQPG-FKHDGHTYTTMIGILGQARQFGVLKKLLDEMS-RAHCKP-TVVTYNR-I 401

Query: 249 ITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIG 308
           I      + + E V   + M E G  P    +    +       L  A  ++G M   +G
Sbjct: 402 IHAYGRANYLKEAVKVFEEMQEAGYEPDRVTYCTLIDIHAKAGYLDIAMDLYGRMQ-EVG 460

Query: 309 FRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEAS 368
             PDT  Y+ M++      +  AA KL  EM+ NG  P++ TYNI+     K R      
Sbjct: 461 LSPDTFTYSAMVNCLGKGGQLAAAYKLFCEMIENGCTPNLVTYNIMIALQAKARNYENVV 520

Query: 369 GLFNEM 374
            L+ +M
Sbjct: 521 KLYKDM 526



 Score = 40.8 bits (94), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 76/209 (36%), Gaps = 39/209 (18%)

Query: 308 GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEA 367
           GF+ D H Y  MI +   + + G   KLLDEM      P + TYN +     +   L EA
Sbjct: 355 GFKHDGHTYTTMIGILGQARQFGVLKKLLDEMSRAHCKPTVVTYNRIIHAYGRANYLKEA 414

Query: 368 SGLFNEM---------VKNENVLNHENCRAAVRVYMD----------SDDPYV------- 401
             +F EM         V    +++       + + MD          S D +        
Sbjct: 415 VKVFEEMQEAGYEPDRVTYCTLIDIHAKAGYLDIAMDLYGRMQEVGLSPDTFTYSAMVNC 474

Query: 402 ---------AIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVT 452
                    A K +  MIEN C+    T N+++A           VK  K M   G +  
Sbjct: 475 LGKGGQLAAAYKLFCEMIENGCTPNLVTYNIMIALQAKARNYENVVKLYKDMQVAGFRPD 534

Query: 453 PFALSKLKQILIKA----RKEAVYEELLK 477
               S + ++L         EAV+ E+ +
Sbjct: 535 KITYSIVMEVLGHCGHLDEAEAVFIEMRR 563


>gi|115469690|ref|NP_001058444.1| Os06g0694600 [Oryza sativa Japonica Group]
 gi|53791827|dbj|BAD53893.1| pentatricopeptide repeat-containing protein-like [Oryza sativa
           Japonica Group]
 gi|53792848|dbj|BAD53881.1| pentatricopeptide repeat-containing protein-like [Oryza sativa
           Japonica Group]
 gi|113596484|dbj|BAF20358.1| Os06g0694600 [Oryza sativa Japonica Group]
          Length = 484

 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 88/365 (24%), Positives = 156/365 (42%), Gaps = 23/365 (6%)

Query: 131 NVLSLATFASVFSSYVVAD----RVKDAITTFD----VMEQYGCKHDVFALNSLLSAICR 182
           ++LS    A + S+ + A         A+T FD    V  + G +  V  LN+LL A C 
Sbjct: 116 HLLSTPALAVLLSTALSASAPGASFDAAVTCFDSAARVWARAGREFGVAELNALLRAFCA 175

Query: 183 DGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVP 242
            G+  +A            PD  T+  LL G+ KE   A A   F    +  G+ PD V 
Sbjct: 176 RGRVAEARALFHRYCDAYPPDARTFNTLLLGF-KEAGNAQALDLFYHDAVLRGFVPDAV- 233

Query: 243 AYDSYLITLLKGCDG--IYETVNSLKRMMER-GCNPGMTFFKLAFEECLTGQNLRGAEFI 299
              SY + +   C      + ++ L  M +R  C P +  F          +N   A  +
Sbjct: 234 ---SYCVRMDAYCKKGRFLDALDLLDEMRKRENCRPTLQVFTTLIYGAGIVRNAIRARQL 290

Query: 300 WGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNIL---FE 356
           +  M G+ G  PD   +N ++  Y  + +  + M ++ EM   G   D  +YN +   F+
Sbjct: 291 FDEM-GQWGVTPDRGAHNALMGAYVRARDLQSGMTVMSEMERKGIGLDDVSYNTMLCGFQ 349

Query: 357 FLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSD 416
            +     +W+   ++++MV +  +         ++V+ ++  P + ++ W Y++   C  
Sbjct: 350 RIGDLEGIWK---VYSKMVGSGFMPRTRTTMLLMKVFCENARPDLGLELWDYLLGKGCVP 406

Query: 417 LSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELL 476
                ++LV GLC   ++ EA +  + M E G+  T  A   L+  L + R+    EE+ 
Sbjct: 407 HRHALDVLVTGLCCRGVVLEAYRCFREMIEMGMTPTERAFRVLEGFLKRKREFEKLEEIR 466

Query: 477 KKCKA 481
           +  KA
Sbjct: 467 QMMKA 471


>gi|359472741|ref|XP_003631192.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g19890-like [Vitis vinifera]
          Length = 708

 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 81/361 (22%), Positives = 151/361 (41%), Gaps = 43/361 (11%)

Query: 136 ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR- 194
           AT   +  ++     V   +  F  M + G   +V    +L++ +C+ G    A++ L  
Sbjct: 260 ATCTLIIDAFCQKGYVNRVVGYFWKMVEMGLAPNVINFTALINGLCKQGSIKQAFELLEE 319

Query: 195 VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG 254
           +V    KP+  T+  L++G  K+     A + F ++V   G+ P NV  Y + +    K 
Sbjct: 320 MVRRGWKPNVYTHTTLIDGLCKKGWTEKAFRLFLKLVRSDGYKP-NVHTYTAMINGYCKE 378

Query: 255 CDGIYETVNSLKRMMERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDT 313
            D +      L RM E+G  P   T+  L    C  G  +R  E +   ++G+ GF P+ 
Sbjct: 379 -DKLNRAEMLLSRMQEQGLVPNTNTYTTLIDGHCKVGNFVRAYELM--DLMGKEGFSPNI 435

Query: 314 HMYNMMI-----------------------------------SLYCYSNETGAAMKLLDE 338
           + YN +I                                   S++C   +T  ++   ++
Sbjct: 436 YTYNAIIDGLCKKGSLDEAYRLLNKVSVHGLQADGVTYTILMSVHCRQADTNRSLVFFNK 495

Query: 339 MVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDD 398
           M+  G  PDI +Y  L     + +++ E+  LF E V    +   +   + +  Y    +
Sbjct: 496 MLKVGFTPDIHSYTTLISTFCRQKQMKESERLFEEAVSLGLIPTKKTYTSMICGYCRYGN 555

Query: 399 PYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSK 458
             +A+K ++ M  + C+  S T   L++GLC    L +A      M +KG+  +P  +++
Sbjct: 556 TSLAVKLFQRMSNHGCAPDSITYGALISGLCKESKLDDARNLYDAMMDKGL--SPCEVTR 613

Query: 459 L 459
           L
Sbjct: 614 L 614



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 76/321 (23%), Positives = 124/321 (38%), Gaps = 41/321 (12%)

Query: 132 VLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ 191
           V S  T   V    V    V+ A   F  M Q G   D  +   ++ A C  G+ ++A +
Sbjct: 186 VPSTQTLNCVLDVAVGMGLVEIAENMFVEMCQRGVSPDCVSFKLMVVACCNMGRVLEAER 245

Query: 192 FLR-VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLIT 250
           +L  +V+     DN T  ++++ + ++  V      F +MV E+G  P NV  + + +  
Sbjct: 246 WLNAMVERGFIVDNATCTLIIDAFCQKGYVNRVVGYFWKMV-EMGLAP-NVINFTALING 303

Query: 251 LLKGCDGIYETVNSLKRMMERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGF 309
           L K    I +    L+ M+ RG  P + T   L    C  G   +    ++  +V   G+
Sbjct: 304 LCKQ-GSIKQAFELLEEMVRRGWKPNVYTHTTLIDGLCKKGWTEKAFR-LFLKLVRSDGY 361

Query: 310 RPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASG 369
           +P+ H Y  MI+ YC  ++   A  LL  M   G  P+  TY  L +   K      A  
Sbjct: 362 KPNVHTYTAMINGYCKEDKLNRAEMLLSRMQEQGLVPNTNTYTTLIDGHCKVGNFVRAYE 421

Query: 370 LFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLC 429
           L + M K                  +   P +                  T N ++ GLC
Sbjct: 422 LMDLMGK------------------EGFSPNIY-----------------TYNAIIDGLC 446

Query: 430 DMHMLPEAVKYAKGMAEKGIQ 450
               L EA +    ++  G+Q
Sbjct: 447 KKGSLDEAYRLLNKVSVHGLQ 467


>gi|357118714|ref|XP_003561096.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g39710-like [Brachypodium distachyon]
          Length = 718

 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 69/271 (25%), Positives = 123/271 (45%), Gaps = 11/271 (4%)

Query: 105 NLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQY 164
            LV       CL +A+    +  +K  V  + TF S+  +   A  ++ A+     M + 
Sbjct: 265 TLVSGYCKAGCLHEALAVFAEMAQKGVVPDVVTFTSLIHAMCRAGNLERAVALVGQMRER 324

Query: 165 GCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYAILLEGWEKERDVANA 223
           G + + F   +L+   CR+G   DA   ++ + + RI+P    Y +L+ G+ K   +  A
Sbjct: 325 GLRMNEFTFTALIDGFCRNGFLDDALLAMKEMRECRIQPSVVCYNVLINGYCKLGRMDEA 384

Query: 224 KKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSL---KRMMERGCNPGMTFF 280
           ++   EM  + G  PD V  Y     T+L G   I +T ++    ++M+++G  P    +
Sbjct: 385 RELIHEMEAK-GMKPD-VVTYS----TILSGYCKIGDTDSAFELNRKMLKKGVVPDAITY 438

Query: 281 KLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMV 340
                     + L  A  ++  M+ ++G +PD   Y  +I  +C       A+ L DEM+
Sbjct: 439 SSLIRGLCEERRLGDACELFEKML-QLGLQPDEFTYTTLIDGHCKEGNVQKALSLHDEMI 497

Query: 341 YNGAFPDIQTYNILFEFLVKGRKLWEASGLF 371
             G  PD+ TY++L + L K  +  EA  L 
Sbjct: 498 KKGVLPDVVTYSVLIDGLSKSARTKEAQRLL 528



 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 91/364 (25%), Positives = 161/364 (44%), Gaps = 19/364 (5%)

Query: 109 DLLGKNCLFDAMWDA--------IKSMKKENVL-SLATFASVFSSYVVADRVKDAITTF- 158
            LL  N +  A+ DA        + SM ++ V  ++ T+  +  +     + ++A+    
Sbjct: 119 SLLAYNAVLLALSDASLPSARRLLASMLRDGVAPNVYTYNILVRALCARGQREEALGVVG 178

Query: 159 DVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV-DGRIKPDNDTYAILLEGWEKE 217
           D M   GC  +V   N+L++A CR G+   A + + V+ +G ++P   T+  ++ G  K 
Sbjct: 179 DDMRGAGCAPNVVTYNTLVAAFCRAGEVDAAERLVGVMREGGVRPSLVTFNTVVNGLCKA 238

Query: 218 RDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLK-GCDGIYETVNSLKRMMERGCNPG 276
             + +A+K F EM  E G  PD V +Y++ +    K GC  ++E +     M ++G  P 
Sbjct: 239 GRMEDARKMFDEMARE-GLTPDGV-SYNTLVSGYCKAGC--LHEALAVFAEMAQKGVVPD 294

Query: 277 -MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKL 335
            +TF  L    C  G NL  A  + G M  R G R +   +  +I  +C +     A+  
Sbjct: 295 VVTFTSLIHAMCRAG-NLERAVALVGQMRER-GLRMNEFTFTALIDGFCRNGFLDDALLA 352

Query: 336 LDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMD 395
           + EM      P +  YN+L     K  ++ EA  L +EM       +       +  Y  
Sbjct: 353 MKEMRECRIQPSVVCYNVLINGYCKLGRMDEARELIHEMEAKGMKPDVVTYSTILSGYCK 412

Query: 396 SDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFA 455
             D   A +  + M++      + T + L+ GLC+   L +A +  + M + G+Q   F 
Sbjct: 413 IGDTDSAFELNRKMLKKGVVPDAITYSSLIRGLCEERRLGDACELFEKMLQLGLQPDEFT 472

Query: 456 LSKL 459
            + L
Sbjct: 473 YTTL 476



 Score = 40.4 bits (93), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 67/154 (43%), Gaps = 10/154 (6%)

Query: 308 GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEA 367
           G+ P    YN ++ L        +A +LL  M+ +G  P++ TYNIL   L    +  EA
Sbjct: 115 GYAPSLLAYNAVL-LALSDASLPSARRLLASMLRDGVAPNVYTYNILVRALCARGQREEA 173

Query: 368 SGLFNEMVKNE----NVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNL 423
            G+  + ++      NV+ +    AA   +  + +   A +    M E        T N 
Sbjct: 174 LGVVGDDMRGAGCAPNVVTYNTLVAA---FCRAGEVDAAERLVGVMREGGVRPSLVTFNT 230

Query: 424 LVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALS 457
           +V GLC    + +A K    MA +G+  TP  +S
Sbjct: 231 VVNGLCKAGRMEDARKMFDEMAREGL--TPDGVS 262


>gi|50508175|dbj|BAD30981.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|50508218|dbj|BAD31653.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
          Length = 918

 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 82/316 (25%), Positives = 139/316 (43%), Gaps = 23/316 (7%)

Query: 157 TFDVMEQY------GCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYAI 209
           T  VM++Y      G + ++   N++++A+C+DG   DA   ++ V +  + PD  TY  
Sbjct: 196 TAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTS 255

Query: 210 LLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG-CDG--IYETVNSLK 266
           ++ G  ++ D+ +A + F +M  E G +P+ V  Y     TL+ G CD   + E  + ++
Sbjct: 256 MILGHCRKHDLDSALQVFNQMAKE-GCEPNTV-TYS----TLINGLCDSGRVNEAFDLIR 309

Query: 267 RMMERGCNP-GMTFFKLAFEECLTGQNLRGAEFIWGAMVG--RIGFRPDTHMYNMMISLY 323
            M+  G  P   T        C  G      E  W   V     G  P+ + Y  +IS  
Sbjct: 310 EMILHGILPTAHTCTGPIIALCDMG----CYEDAWRLFVDMKNKGCEPNVYTYTALISGL 365

Query: 324 CYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNH 383
           C S     A+ L   M  +G FP+  TYN L   LV+ R++  A  + N M +N    N 
Sbjct: 366 CVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNI 425

Query: 384 ENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKG 443
                 ++ Y    DP  A+     M++   S    T N ++ G CD      A++    
Sbjct: 426 VTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDL 485

Query: 444 MAEKGIQVTPFALSKL 459
           M + G +   ++ ++L
Sbjct: 486 MRDGGCKPDEWSYTEL 501



 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 88/336 (26%), Positives = 143/336 (42%), Gaps = 8/336 (2%)

Query: 117 FDAMWDAIKSMKKENV-LSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNS 175
            D+       M KE    +  T++++ +    + RV +A      M  +G          
Sbjct: 266 LDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTG 325

Query: 176 LLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEV 234
            + A+C  G   DAW+ F+ + +   +P+  TY  L+ G      +  A   F  M  + 
Sbjct: 326 PIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRD- 384

Query: 235 GWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGM-TFFKLAFEECLTGQNL 293
           G  P+ V  Y++ LI +L     I      L  M   GC+P + T+ ++    C+ G + 
Sbjct: 385 GVFPNTV-TYNA-LINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILG-DP 441

Query: 294 RGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNI 353
           + A  +   M+ R G   +   YN +I  YC S  T +A+++LD M   G  PD  +Y  
Sbjct: 442 KKAMLVMNNMLQR-GHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTE 500

Query: 354 LFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENH 413
           L     K  K+  A GLFNEMV +    N     A +  Y   +    A    ++M  + 
Sbjct: 501 LICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSG 560

Query: 414 CSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
           C    +T N+L+ GL   +    A +  K M E+GI
Sbjct: 561 CRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGI 596



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 69/311 (22%), Positives = 121/311 (38%), Gaps = 43/311 (13%)

Query: 104 WNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVME 162
           +N ++++L +N      +  +  M +     ++ T+  +   Y +    K A+   + M 
Sbjct: 393 YNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNML 452

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV-DGRIKPDNDTYAILLEGWEKERDVA 221
           Q G   ++   N+++   C  G T  A + L ++ DG  KPD  +Y  L+ G+ K   + 
Sbjct: 453 QRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKME 512

Query: 222 NAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMER-GCNPGMTFF 280
           +A   F EMV + G  P+ V  Y + +    K  D   +T  SL   M+R GC P +  +
Sbjct: 513 SAFGLFNEMVDD-GLCPNEV-TYTALIDGYCK--DEKLDTATSLLEHMKRSGCRPNVQTY 568

Query: 281 KLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMV 340
            +         N  GAE +   M+   G  P+   Y  MI   C +  T  A+++ ++M+
Sbjct: 569 NVLIHGLTKQNNFSGAEELCKVMIEE-GIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMI 627

Query: 341 YNGAFP-----------------------------------DIQTYNILFEFLVKGRKLW 365
             G  P                                   D  TY  + E  +   K+ 
Sbjct: 628 EQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKVE 687

Query: 366 EASGLFNEMVK 376
            A      M+K
Sbjct: 688 HAFNFLGRMIK 698



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 61/279 (21%), Positives = 111/279 (39%), Gaps = 45/279 (16%)

Query: 127 MKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICR---- 182
           +++ +  +L T+ ++   Y  +     A+   D+M   GCK D ++   L+   C+    
Sbjct: 452 LQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKM 511

Query: 183 ------------DGKTIDAWQFLRVVDGRIK--------------------PDNDTYAIL 210
                       DG   +   +  ++DG  K                    P+  TY +L
Sbjct: 512 ESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVL 571

Query: 211 LEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMME 270
           + G  K+ + + A++   +++IE G  P NV  Y + +  L K        +    +M+E
Sbjct: 572 IHGLTKQNNFSGAEE-LCKVMIEEGIFP-NVVTYTAMIDGLCKN-GSTSLALEMFNKMIE 628

Query: 271 RGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETG 330
           +GC P +  +            +  AE ++ A + R G  PD   Y  MI  Y  S +  
Sbjct: 629 QGCLPNLLTYSSLIRALGQEGKVEEAENLF-AELERHGLIPDEITYVKMIEAYIMSGKVE 687

Query: 331 AAMKLLDEMVYNGAFPDIQTYNILF-----EFLVKGRKL 364
            A   L  M+  G  P + TY +L      E+L+  ++L
Sbjct: 688 HAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYLLADQRL 726



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 54/227 (23%), Positives = 91/227 (40%), Gaps = 4/227 (1%)

Query: 243 AYDSYLITLLKGCDGIYETV-NSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWG 301
           AY + LI L +   G+   V +   RM+  G  P +  +           N+  AE I  
Sbjct: 182 AYSALLIHLSR--LGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMK 239

Query: 302 AMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKG 361
             V      PDT  Y  MI  +C  ++  +A+++ ++M   G  P+  TY+ L   L   
Sbjct: 240 K-VFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDS 298

Query: 362 RKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETG 421
            ++ EA  L  EM+ +  +     C   +    D      A + +  M    C     T 
Sbjct: 299 GRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTY 358

Query: 422 NLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARK 468
             L++GLC   +L  A+     M+  G+       + L  IL++ R+
Sbjct: 359 TALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRR 405



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 55/239 (23%), Positives = 96/239 (40%), Gaps = 27/239 (11%)

Query: 160 VMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKER 218
           VM + G   +V    +++  +C++G T  A + F ++++    P+  TY+ L+    +E 
Sbjct: 590 VMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEG 649

Query: 219 DVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNP--- 275
            V  A+  F E+    G  PD +         ++ G   +    N L RM++ GC P   
Sbjct: 650 KVEEAENLFAELERH-GLIPDEITYVKMIEAYIMSG--KVEHAFNFLGRMIKAGCQPTLW 706

Query: 276 --GMTFFKLAFEECLTGQNL------------------RGAEFIWGAMVGRIGFRPDTHM 315
             G+    L  E  L  Q L                  + A  +  A +  +       +
Sbjct: 707 TYGVLIKGLKNEYLLADQRLAALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDPGLSVQV 766

Query: 316 YNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
            N ++S    +     A +LL  M+  G  PD + YN L   L++ R +  A G+F  M
Sbjct: 767 QNALVSNLSTAGRWFEANELLGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHM 825


>gi|297833654|ref|XP_002884709.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330549|gb|EFH60968.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 689

 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 93/395 (23%), Positives = 167/395 (42%), Gaps = 9/395 (2%)

Query: 84  AVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVF 142
           A  F  W  ++   K   ++++ V++ L K    D   +    M +  V   +  +  + 
Sbjct: 168 ARGFLNW-MWKEGFKPDVFSYSTVINDLAKTGKLDDALELFDEMSERRVAPDVTCYNILI 226

Query: 143 SSYVVADRVKDAITTFD-VMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRI 200
             ++     K A+  +D ++E      +V   N ++S + + G+  D  +   R+     
Sbjct: 227 DGFLKEKDHKMAMQLWDKLLEDSSVYPNVKTHNIMISGLSKCGRVDDCLKIWDRMKQNER 286

Query: 201 KPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYE 260
           + D  TY+ L+ G   E +V  A+  F E+V    +   +V  Y++ L    + C  I E
Sbjct: 287 EKDLYTYSSLIHGLCDEGNVDKAESVFNELVERKAFI--DVVTYNTMLGGFCR-CGKIKE 343

Query: 261 TVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMI 320
           ++  L R+ME+  +  +  + +  +  L    +  A  IW  M  + G+  D   Y + I
Sbjct: 344 SL-ELWRIMEQRNSVNIVSYNILIKGLLENGKIDEATMIWRLMPAK-GYAADNTTYGIFI 401

Query: 321 SLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENV 380
              C +     A+ ++ E+   G   D+  Y  + + L K R+L EAS L  EM K+   
Sbjct: 402 HGLCVNGYVNKALGVMQEVESKGGHLDVYAYASIIDCLCKKRRLEEASNLVKEMSKHGVE 461

Query: 381 LNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKY 440
           LN   C A +   +       A    + M +N C     + N+L+ GLC+     EA  +
Sbjct: 462 LNSHVCNALIGGLIRDSRLSDASLLMRGMGKNGCLPTVVSYNILICGLCEAGKFGEASAF 521

Query: 441 AKGMAEKGIQVTPFALSKLKQILIKARKEAVYEEL 475
            K M E G++      S L   L + RK  +  EL
Sbjct: 522 VKEMLENGLKPDLKTYSILLGGLCRDRKIELALEL 556



 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 80/377 (21%), Positives = 153/377 (40%), Gaps = 41/377 (10%)

Query: 127 MKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKT 186
           ++++  + + T+ ++   +    ++K+++  + +MEQ     ++ + N L+  +  +GK 
Sbjct: 317 VERKAFIDVVTYNTMLGGFCRCGKIKESLELWRIMEQRN-SVNIVSYNILIKGLLENGKI 375

Query: 187 IDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYD 245
            +A    R++  +    DN TY I + G      V  A     E  +E      +V AY 
Sbjct: 376 DEATMIWRLMPAKGYAADNTTYGIFIHGLCVNGYVNKALGVMQE--VESKGGHLDVYAYA 433

Query: 246 SYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVG 305
           S +  L K    + E  N +K M + G               +    L  A  +   M G
Sbjct: 434 SIIDCLCKK-RRLEEASNLVKEMSKHGVELNSHVCNALIGGLIRDSRLSDASLLMRGM-G 491

Query: 306 RIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLW 365
           + G  P    YN++I   C + + G A   + EM+ NG  PD++TY+IL   L + RK+ 
Sbjct: 492 KNGCLPTVVSYNILICGLCEAGKFGEASAFVKEMLENGLKPDLKTYSILLGGLCRDRKIE 551

Query: 366 EASGLFNEMVKN--------ENVL--------------------NHENCRAAVRVYMDSD 397
            A  L+++ +++         N+L                     H NC A +  Y    
Sbjct: 552 LALELWHQFLQSGLEPDVMMHNILIHGLCSVGKLDDAMTVMANMEHRNCTANLVTYNTLM 611

Query: 398 DPYVAIK-------FWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQ 450
           + Y  ++        W YM +        + N ++ GLC  H +  A+++       GI 
Sbjct: 612 EGYFKVRDSNRATVIWGYMYKMGLQPDIISYNTILKGLCLCHRVSYAIEFFDDARNHGIF 671

Query: 451 VTPFALSKLKQILIKAR 467
            T +  + L + ++  +
Sbjct: 672 PTVYTWNILVRAVVNRK 688



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 70/317 (22%), Positives = 139/317 (43%), Gaps = 18/317 (5%)

Query: 140 SVFSSYVVADRVKDAITTFDVM-EQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVD- 197
           SV  +Y        A+  F  M E +GC+  + + N+LL+A       ++A Q+++V   
Sbjct: 83  SVIKTYGKNSMPDRALDVFKRMREIFGCEPGIRSYNTLLNAF------VEAKQWVKVESL 136

Query: 198 ------GRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITL 251
                   + P+  TY +L++   K+++   A+     M  E G+ PD V +Y S +I  
Sbjct: 137 FAYFETAGVAPNLQTYNVLIKMSCKKKEFEKARGFLNWMWKE-GFKPD-VFSY-STVIND 193

Query: 252 LKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRP 311
           L     + + +     M ER   P +T + +  +  L  ++ + A  +W  ++      P
Sbjct: 194 LAKTGKLDDALELFDEMSERRVAPDVTCYNILIDGFLKEKDHKMAMQLWDKLLEDSSVYP 253

Query: 312 DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLF 371
           +   +N+MIS           +K+ D M  N    D+ TY+ L   L     + +A  +F
Sbjct: 254 NVKTHNIMISGLSKCGRVDDCLKIWDRMKQNEREKDLYTYSSLIHGLCDEGNVDKAESVF 313

Query: 372 NEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDM 431
           NE+V+ +  ++       +  +        +++ W+ M + +  ++  + N+L+ GL + 
Sbjct: 314 NELVERKAFIDVVTYNTMLGGFCRCGKIKESLELWRIMEQRNSVNIV-SYNILIKGLLEN 372

Query: 432 HMLPEAVKYAKGMAEKG 448
             + EA    + M  KG
Sbjct: 373 GKIDEATMIWRLMPAKG 389



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 69/323 (21%), Positives = 136/323 (42%), Gaps = 40/323 (12%)

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERD 219
           M + G K DVF+ +++++ + + GK  DA + F  + + R+ PD   Y IL++G+ KE+D
Sbjct: 175 MWKEGFKPDVFSYSTVINDLAKTGKLDDALELFDEMSERRVAPDVTCYNILIDGFLKEKD 234

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTF 279
              A + + +++ +    P NV  ++  +I+ L  C  + + +    RM           
Sbjct: 235 HKMAMQLWDKLLEDSSVYP-NVKTHN-IMISGLSKCGRVDDCLKIWDRM----------- 281

Query: 280 FKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEM 339
                      QN R                 D + Y+ +I   C       A  + +E+
Sbjct: 282 ----------KQNER---------------EKDLYTYSSLIHGLCDEGNVDKAESVFNEL 316

Query: 340 VYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDP 399
           V   AF D+ TYN +     +  K+ E+  L+  M +  N +N  +    ++  +++   
Sbjct: 317 VERKAFIDVVTYNTMLGGFCRCGKIKESLELWRIM-EQRNSVNIVSYNILIKGLLENGKI 375

Query: 400 YVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKL 459
             A   W+ M     +  + T  + + GLC    + +A+   + +  KG  +  +A + +
Sbjct: 376 DEATMIWRLMPAKGYAADNTTYGIFIHGLCVNGYVNKALGVMQEVESKGGHLDVYAYASI 435

Query: 460 KQILIKARKEAVYEELLKKCKAH 482
              L K R+      L+K+   H
Sbjct: 436 IDCLCKKRRLEEASNLVKEMSKH 458


>gi|218200911|gb|EEC83338.1| hypothetical protein OsI_28730 [Oryza sativa Indica Group]
 gi|258644730|dbj|BAI39975.1| putative fertility restorer homologue [Oryza sativa Indica Group]
          Length = 918

 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 82/316 (25%), Positives = 139/316 (43%), Gaps = 23/316 (7%)

Query: 157 TFDVMEQY------GCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYAI 209
           T  VM++Y      G + ++   N++++A+C+DG   DA   ++ V +  + PD  TY  
Sbjct: 196 TAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTS 255

Query: 210 LLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG-CDG--IYETVNSLK 266
           ++ G  ++ D+ +A + F +M  E G +P+ V  Y     TL+ G CD   + E  + ++
Sbjct: 256 MILGHCRKHDLDSALQVFNQMAKE-GCEPNTV-TYS----TLINGLCDSGRVNEAFDLIR 309

Query: 267 RMMERGCNP-GMTFFKLAFEECLTGQNLRGAEFIWGAMVG--RIGFRPDTHMYNMMISLY 323
            M+  G  P   T        C  G      E  W   V     G  P+ + Y  +IS  
Sbjct: 310 EMILHGILPTAHTCTGPIIALCDMG----CYEDAWRLFVDMKNKGCEPNVYTYTALISGL 365

Query: 324 CYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNH 383
           C S     A+ L   M  +G FP+  TYN L   LV+ R++  A  + N M +N    N 
Sbjct: 366 CVSGILKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNI 425

Query: 384 ENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKG 443
                 ++ Y    DP  A+     M++   S    T N ++ G CD      A++    
Sbjct: 426 VTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDL 485

Query: 444 MAEKGIQVTPFALSKL 459
           M + G +   ++ ++L
Sbjct: 486 MRDGGCKPDEWSYTEL 501



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 88/336 (26%), Positives = 143/336 (42%), Gaps = 8/336 (2%)

Query: 117 FDAMWDAIKSMKKENV-LSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNS 175
            D+       M KE    +  T++++ +    + RV +A      M  +G          
Sbjct: 266 LDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTG 325

Query: 176 LLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEV 234
            + A+C  G   DAW+ F+ + +   +P+  TY  L+ G      +  A   F  M  + 
Sbjct: 326 PIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGILKVAIGLFHRMSRD- 384

Query: 235 GWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGM-TFFKLAFEECLTGQNL 293
           G  P+ V  Y++ LI +L     I      L  M   GC+P + T+ ++    C+ G + 
Sbjct: 385 GVFPNTV-TYNA-LINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILG-DP 441

Query: 294 RGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNI 353
           + A  +   M+ R G   +   YN +I  YC S  T +A+++LD M   G  PD  +Y  
Sbjct: 442 KKAMLVMNNMLQR-GHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTE 500

Query: 354 LFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENH 413
           L     K  K+  A GLFNEMV +    N     A +  Y   +    A    ++M  + 
Sbjct: 501 LICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSG 560

Query: 414 CSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
           C    +T N+L+ GL   +    A +  K M E+GI
Sbjct: 561 CRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGI 596



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 69/311 (22%), Positives = 121/311 (38%), Gaps = 43/311 (13%)

Query: 104 WNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVME 162
           +N ++++L +N      +  +  M +     ++ T+  +   Y +    K A+   + M 
Sbjct: 393 YNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNML 452

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV-DGRIKPDNDTYAILLEGWEKERDVA 221
           Q G   ++   N+++   C  G T  A + L ++ DG  KPD  +Y  L+ G+ K   + 
Sbjct: 453 QRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKME 512

Query: 222 NAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMER-GCNPGMTFF 280
           +A   F EMV + G  P+ V  Y + +    K  D   +T  SL   M+R GC P +  +
Sbjct: 513 SAFGLFNEMVDD-GLCPNEV-TYTALIDGYCK--DEKLDTATSLLEHMKRSGCRPNVQTY 568

Query: 281 KLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMV 340
            +         N  GAE +   M+   G  P+   Y  MI   C +  T  A+++ ++M+
Sbjct: 569 NVLIHGLTKQNNFSGAEELCKVMIEE-GIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMI 627

Query: 341 YNGAFP-----------------------------------DIQTYNILFEFLVKGRKLW 365
             G  P                                   D  TY  + E  +   K+ 
Sbjct: 628 EQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKVE 687

Query: 366 EASGLFNEMVK 376
            A      M+K
Sbjct: 688 HAFNFLGRMIK 698



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 61/279 (21%), Positives = 111/279 (39%), Gaps = 45/279 (16%)

Query: 127 MKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICR---- 182
           +++ +  +L T+ ++   Y  +     A+   D+M   GCK D ++   L+   C+    
Sbjct: 452 LQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKM 511

Query: 183 ------------DGKTIDAWQFLRVVDGRIK--------------------PDNDTYAIL 210
                       DG   +   +  ++DG  K                    P+  TY +L
Sbjct: 512 ESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVL 571

Query: 211 LEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMME 270
           + G  K+ + + A++   +++IE G  P NV  Y + +  L K        +    +M+E
Sbjct: 572 IHGLTKQNNFSGAEE-LCKVMIEEGIFP-NVVTYTAMIDGLCKN-GSTSLALEMFNKMIE 628

Query: 271 RGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETG 330
           +GC P +  +            +  AE ++ A + R G  PD   Y  MI  Y  S +  
Sbjct: 629 QGCLPNLLTYSSLIRALGQEGKVEEAENLF-AELERHGLIPDEITYVKMIEAYIMSGKVE 687

Query: 331 AAMKLLDEMVYNGAFPDIQTYNILF-----EFLVKGRKL 364
            A   L  M+  G  P + TY +L      E+L+  ++L
Sbjct: 688 HAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYLLADQRL 726



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 54/227 (23%), Positives = 91/227 (40%), Gaps = 4/227 (1%)

Query: 243 AYDSYLITLLKGCDGIYETV-NSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWG 301
           AY + LI L +   G+   V +   RM+  G  P +  +           N+  AE I  
Sbjct: 182 AYSALLIHLSR--LGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMK 239

Query: 302 AMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKG 361
             V      PDT  Y  MI  +C  ++  +A+++ ++M   G  P+  TY+ L   L   
Sbjct: 240 K-VFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDS 298

Query: 362 RKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETG 421
            ++ EA  L  EM+ +  +     C   +    D      A + +  M    C     T 
Sbjct: 299 GRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTY 358

Query: 422 NLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARK 468
             L++GLC   +L  A+     M+  G+       + L  IL++ R+
Sbjct: 359 TALISGLCVSGILKVAIGLFHRMSRDGVFPNTVTYNALINILVENRR 405



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 55/239 (23%), Positives = 96/239 (40%), Gaps = 27/239 (11%)

Query: 160 VMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKER 218
           VM + G   +V    +++  +C++G T  A + F ++++    P+  TY+ L+    +E 
Sbjct: 590 VMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEG 649

Query: 219 DVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNP--- 275
            V  A+  F E+    G  PD +         ++ G   +    N L RM++ GC P   
Sbjct: 650 KVEEAENLFAELERH-GLIPDEITYVKMIEAYIMSG--KVEHAFNFLGRMIKAGCQPTLW 706

Query: 276 --GMTFFKLAFEECLTGQNL------------------RGAEFIWGAMVGRIGFRPDTHM 315
             G+    L  E  L  Q L                  + A  +  A +  +       +
Sbjct: 707 TYGVLIKGLKNEYLLADQRLAALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDPGLSVQV 766

Query: 316 YNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
            N ++S    +     A +LL  M+  G  PD + YN L   L++ R +  A G+F  M
Sbjct: 767 QNALVSNLSTAGRWFEANELLGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHM 825


>gi|115474441|ref|NP_001060817.1| Os08g0110200 [Oryza sativa Japonica Group]
 gi|42408384|dbj|BAD09535.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|113622786|dbj|BAF22731.1| Os08g0110200 [Oryza sativa Japonica Group]
 gi|125601950|gb|EAZ41275.1| hypothetical protein OsJ_25782 [Oryza sativa Japonica Group]
          Length = 798

 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 83/373 (22%), Positives = 157/373 (42%), Gaps = 33/373 (8%)

Query: 115 CLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALN 174
           CLFD M D  + M    +    T+  +   Y  + + K+AI  F  M + G + DV   N
Sbjct: 227 CLFDEMLD--QGMSPNCI----TYNCLLHGYCSSGKPKEAIGIFRKMCRDGVEPDVVTYN 280

Query: 175 SLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIE 233
           +L+  +C++G++++A + F  +V    KPD+  Y  LL G+  E  +    +   ++++ 
Sbjct: 281 TLMVYLCKNGRSMEARKVFDSMVKKGHKPDSSIYGTLLHGYATEGYLVQMHQLL-DVMVR 339

Query: 234 VGWDPDNVPAYDSYLITLLKGCDG----IYETVNSLKRMMERGCNPGMTFFKLAFEECLT 289
            G  PD+      Y+  +L G       + E + +  +M ++G +P +  +    +    
Sbjct: 340 NGTQPDH------YIFNILIGAYAKHGMVDEAMLAFSKMRQQGLHPNIVTYGTVMDALCR 393

Query: 290 GQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQ 349
              +  A   +  ++   G  P+  ++  +I   C  ++   A +L  EM+  G  P+  
Sbjct: 394 VGKVDDAMSQFDRLISE-GLTPNGVVFRTLIHGLCACDKWDKAEELAVEMIGRGICPNTI 452

Query: 350 TYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYV-------A 402
            +N L   L K   +  A  +F+ MV+        + +  V  Y    D Y        A
Sbjct: 453 FFNTLLNHLCKEGMVTRAKNIFDLMVR-------VDVQCDVITYTTLIDGYCLDGKVDEA 505

Query: 403 IKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQI 462
            K  + M+ +       T N ++ G C    + +A    + MA KG+       S +   
Sbjct: 506 TKLLEGMVLDGVKPNEVTYNTIINGYCKNGRIEDACSLFRQMASKGVNPGIVIYSTILHG 565

Query: 463 LIKARKEAVYEEL 475
           L + R+ A  +EL
Sbjct: 566 LFQTRRIAAAKEL 578



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 74/356 (20%), Positives = 150/356 (42%), Gaps = 47/356 (13%)

Query: 68  ETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSP--YAWNLVVDLLGKNCLFDAMWDAIK 125
            ++   L   Y+  G  V+  +     + +   P  Y +N+++    K+ + D    A  
Sbjct: 311 SSIYGTLLHGYATEGYLVQMHQLLDVMVRNGTQPDHYIFNILIGAYAKHGMVDEAMLAFS 370

Query: 126 SMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVMEQYG------------------- 165
            M+++ +  ++ T+ +V  +     +V DA++ FD +   G                   
Sbjct: 371 KMRQQGLHPNIVTYGTVMDALCRVGKVDDAMSQFDRLISEGLTPNGVVFRTLIHGLCACD 430

Query: 166 -----------------CKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTY 207
                            C + +F  N+LL+ +C++G    A   F  +V   ++ D  TY
Sbjct: 431 KWDKAEELAVEMIGRGICPNTIF-FNTLLNHLCKEGMVTRAKNIFDLMVRVDVQCDVITY 489

Query: 208 AILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSL-K 266
             L++G+  +  V  A K    MV++ G  P+ V  Y++ +    K  +G  E   SL +
Sbjct: 490 TTLIDGYCLDGKVDEATKLLEGMVLD-GVKPNEV-TYNTIINGYCK--NGRIEDACSLFR 545

Query: 267 RMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYS 326
           +M  +G NPG+  +          + +  A+ ++  M+ + G +     YN+++   C +
Sbjct: 546 QMASKGVNPGIVIYSTILHGLFQTRRIAAAKELYLWMI-KCGIKLPIGTYNIILQGLCQN 604

Query: 327 NETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLN 382
           N T  A+++   +         +T+NI+ + L+KG +  EA  LF  ++    V N
Sbjct: 605 NCTDDALRMFHNLCLIDFHLQNRTFNIMIDALLKGGRHDEAKDLFASLLARGLVPN 660



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 78/325 (24%), Positives = 134/325 (41%), Gaps = 22/325 (6%)

Query: 137 TFASVFSSYVVADRVKDAI-TTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRV 195
           TF+ +        R  DA+      M   GC  + F+ N LL  +C + ++  A   L  
Sbjct: 133 TFSPLLKGLCHDKRTSDAMDIALRRMPALGCTPNAFSYNILLKGLCDENRSQQALHLLHT 192

Query: 196 V-----DGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLIT 250
           +      G   PD  +Y  ++ G  +E  +  A   F EM ++ G  P+ +    +Y   
Sbjct: 193 MMADDTRGGCPPDVVSYTTVINGLLREGQLDKAYCLFDEM-LDQGMSPNCI----TYNCL 247

Query: 251 LLKGCDG--IYETVNSLKRMMERGCNPG-MTFFKLAFEECLTGQNLRGAEFIWGAMVGRI 307
           L   C      E +   ++M   G  P  +T+  L    C  G+++  A  ++ +MV + 
Sbjct: 248 LHGYCSSGKPKEAIGIFRKMCRDGVEPDVVTYNTLMVYLCKNGRSME-ARKVFDSMVKK- 305

Query: 308 GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEA 367
           G +PD+ +Y  ++  Y          +LLD MV NG  PD   +NIL     K   + EA
Sbjct: 306 GHKPDSSIYGTLLHGYATEGYLVQMHQLLDVMVRNGTQPDHYIFNILIGAYAKHGMVDEA 365

Query: 368 SGLFNEMVK---NENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLL 424
              F++M +   + N++ +     A+      DD   A+  +  +I    +        L
Sbjct: 366 MLAFSKMRQQGLHPNIVTYGTVMDALCRVGKVDD---AMSQFDRLISEGLTPNGVVFRTL 422

Query: 425 VAGLCDMHMLPEAVKYAKGMAEKGI 449
           + GLC      +A + A  M  +GI
Sbjct: 423 IHGLCACDKWDKAEELAVEMIGRGI 447



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 98/246 (39%), Gaps = 46/246 (18%)

Query: 170 VFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGE 229
           +F LNS LSA+ R+   +    F R+     + D  TY+I++    +   +  A    G 
Sbjct: 66  IFDLNSALSAVARESPAVALSLFNRMP----RADLCTYSIVIGCCSRAGHLDLAFAALGR 121

Query: 230 MVIEVGWDPDNV--------------------------------PAYDSYLITLLKG-CD 256
            VI  GW    +                                P   SY I LLKG CD
Sbjct: 122 -VIRTGWTAQAITFSPLLKGLCHDKRTSDAMDIALRRMPALGCTPNAFSYNI-LLKGLCD 179

Query: 257 --GIYETVNSLKRMM----ERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFR 310
                + ++ L  MM      GC P +  +       L    L  A  ++  M+ + G  
Sbjct: 180 ENRSQQALHLLHTMMADDTRGGCPPDVVSYTTVINGLLREGQLDKAYCLFDEMLDQ-GMS 238

Query: 311 PDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGL 370
           P+   YN ++  YC S +   A+ +  +M  +G  PD+ TYN L  +L K  +  EA  +
Sbjct: 239 PNCITYNCLLHGYCSSGKPKEAIGIFRKMCRDGVEPDVVTYNTLMVYLCKNGRSMEARKV 298

Query: 371 FNEMVK 376
           F+ MVK
Sbjct: 299 FDSMVK 304


>gi|224088774|ref|XP_002308534.1| predicted protein [Populus trichocarpa]
 gi|222854510|gb|EEE92057.1| predicted protein [Populus trichocarpa]
          Length = 567

 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 100/391 (25%), Positives = 166/391 (42%), Gaps = 27/391 (6%)

Query: 70  VEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWN-----LVVDLLGKNCLFDAMWDAI 124
           V +V+K    +P  A+ FF W A  LN   + Y+ N      ++DLL  + LF     A 
Sbjct: 63  VIEVIKEQQPNPYQALFFFNW-ASNLNPNPNNYSHNHRCYVAIIDLLLSHSLFPI---AK 118

Query: 125 KSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDG 184
             ++K    S    + +  +Y  +   K AI  F  +++      +F+ N++L  + +  
Sbjct: 119 NLLEKHGTFSDLLVSKLIRAYGYSGDTKSAIFWFHKVKEIQQGKCLFSWNAILGVLVKVN 178

Query: 185 KTIDAWQFLR--VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVP 242
           +   A  F    V D  +KPD  TY  ++ G+ K   + NA+K F EM+ E      N  
Sbjct: 179 QINVAKSFFDQIVNDAVVKPDASTYTTMIRGFCKVGMIDNARKVFDEMICEPNLITCN-- 236

Query: 243 AYDSYLITLLKGCDGIYETVNS---LKRMME-RGCNP-GMTFFKLAFEECLTGQNLRGAE 297
                  TL+ G     +  N+   L RMME + C P  +T+  L    C  G+     +
Sbjct: 237 -------TLINGYCKKGDMENARIFLCRMMESKDCLPDTVTYSTLIDGYCKKGELNEARK 289

Query: 298 FIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEF 357
           ++ G ++   G  P+   YN +I   C       A +LL +M  NG   ++ T+  + + 
Sbjct: 290 WMDGMLIR--GCNPNLWTYNAIIYGLCLRGNVDEARRLLTKMRLNGVKENVATHLSILKG 347

Query: 358 LVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDL 417
           L    K  EA G F+EM++    L+ +     +  Y     P  AI   K M     S  
Sbjct: 348 LSVAGKSEEAIGYFSEMIRKGMKLDAKEHEVVITAYCKMRKPDEAISLLKEMQAKGISRS 407

Query: 418 SETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448
             + N ++  L ++  L +AV   K +   G
Sbjct: 408 VGSFNAVLRILVEIGELDKAVLLLKQVKNMG 438



 Score = 40.8 bits (94), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 53/276 (19%), Positives = 107/276 (38%), Gaps = 37/276 (13%)

Query: 136 ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-R 194
            T++++   Y     + +A    D M   GC  +++  N+++  +C  G   +A + L +
Sbjct: 269 VTYSTLIDGYCKKGELNEARKWMDGMLIRGCNPNLWTYNAIIYGLCLRGNVDEARRLLTK 328

Query: 195 VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDN------VPAY---- 244
           +    +K +  T+  +L+G         A   F EM I  G   D       + AY    
Sbjct: 329 MRLNGVKENVATHLSILKGLSVAGKSEEAIGYFSEM-IRKGMKLDAKEHEVVITAYCKMR 387

Query: 245 -DSYLITLLK--GCDGIYETVNS--------------------LKRMMERGCNPGMTFFK 281
                I+LLK     GI  +V S                    LK++   GC P +  + 
Sbjct: 388 KPDEAISLLKEMQAKGISRSVGSFNAVLRILVEIGELDKAVLLLKQVKNMGCLPNLVSYS 447

Query: 282 LAF-EECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMV 340
                 C +   ++    +   M+ + GF  D  +Y+ ++  +C +     AM+   + +
Sbjct: 448 TVICGLCRSHGRMQEVAGLVDDML-QDGFEMDATLYSCLVGGFCEAGNEEMAMRAFYDSI 506

Query: 341 YNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK 376
                 ++Q+++     +    K+ EA  +F +M +
Sbjct: 507 NKNYVINLQSFSFFVNLMCGKGKVIEAEQIFKDMCR 542


>gi|145337672|ref|NP_177865.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122244095|sp|Q1PFC5.1|PP130_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g77405
 gi|91806103|gb|ABE65780.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332197853|gb|AEE35974.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 458

 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 83/312 (26%), Positives = 130/312 (41%), Gaps = 58/312 (18%)

Query: 84  AVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKK----ENVLSLATFA 139
           A++FF W        H+      +  LL K   F  +WD ++ + +    +NV++ A+  
Sbjct: 110 ALEFFFWIETHFGFDHNEITCRDMACLLAKGNDFKGLWDFLRQVSRRENGKNVVTTASIT 169

Query: 140 SVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL---RVV 196
            +         VK+A+ TF  M++Y CK DV+A N++++A+CR G    A   L   ++ 
Sbjct: 170 CLMKCLGEEGFVKEALATFYRMKEYHCKPDVYAYNTIINALCRVGNFKKARFLLDQMQLP 229

Query: 197 DGRIKPDNDTYAILLEGWEK-----------ERDVANAKKTFGEMVIEVGWDPDNVPAYD 245
             R  PD  TY IL+  + +            R +  A + F EM+   G+ PD V  Y+
Sbjct: 230 GFRYPPDTYTYTILISSYCRYGMQTGCRKAIRRRMWEANRMFREMLFR-GFVPD-VVTYN 287

Query: 246 SYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVG 305
                L+ GC       N + R +E             FE+  T                
Sbjct: 288 C----LIDGCC----KTNRIGRALE------------LFEDMKTK--------------- 312

Query: 306 RIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNG-AFPDIQTYNILFEFLVKGRKL 364
             G  P+   YN  I  Y  +NE   A++++  M   G   P   TY  L   LV+ R+ 
Sbjct: 313 --GCVPNQVTYNSFIRYYSVTNEIEGAIEMMRTMKKLGHGVPGSSTYTPLIHALVETRRA 370

Query: 365 WEASGLFNEMVK 376
            EA  L  EMV+
Sbjct: 371 AEARDLVVEMVE 382



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 61/219 (27%), Positives = 92/219 (42%), Gaps = 19/219 (8%)

Query: 249 ITLLKGCDG----IYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMV 304
           IT L  C G    + E + +  RM E  C P +  +           N + A F+   M 
Sbjct: 168 ITCLMKCLGEEGFVKEALATFYRMKEYHCKPDVYAYNTIINALCRVGNFKKARFLLDQM- 226

Query: 305 GRIGFR--PDTHMYNMMISLYC-YSNETGA----------AMKLLDEMVYNGAFPDIQTY 351
              GFR  PDT+ Y ++IS YC Y  +TG           A ++  EM++ G  PD+ TY
Sbjct: 227 QLPGFRYPPDTYTYTILISSYCRYGMQTGCRKAIRRRMWEANRMFREMLFRGFVPDVVTY 286

Query: 352 NILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIE 411
           N L +   K  ++  A  LF +M     V N     + +R Y  +++   AI+  + M +
Sbjct: 287 NCLIDGCCKTNRIGRALELFEDMKTKGCVPNQVTYNSFIRYYSVTNEIEGAIEMMRTMKK 346

Query: 412 -NHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
             H    S T   L+  L +     EA      M E G+
Sbjct: 347 LGHGVPGSSTYTPLIHALVETRRAAEARDLVVEMVEAGL 385


>gi|356529360|ref|XP_003533262.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 594

 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 118/508 (23%), Positives = 203/508 (39%), Gaps = 84/508 (16%)

Query: 48  NTPSPTVEDVLDKTLIRVS---QETVEQVLKFSYSH------PGPAVKFFRWSAYQLNDK 98
           +T  P + D   +TL+  S    ET + V+   + H      P P ++ F    + L  K
Sbjct: 28  STSPPPISDAAHRTLLLNSIRTLETADAVVAVDFFHRMLTLTPFPCIQDFNL-LFGLVAK 86

Query: 99  HSPYAWNL----VVDLLGKN----CLFDAMWDAIKSMKKENV--------------LSLA 136
              YA  +    ++  LG      C  +   + +  M+K  +               +L 
Sbjct: 87  SQHYATAISLIKILHSLGDGSADVCTLNIAINCLCHMRKTTLGFAVLGLMTKIGLEPTLV 146

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-V 195
           T  ++ +   +   V  A+   + ME  G   +     +L++ +C+ G T  A + L+ +
Sbjct: 147 TLNTIVNGLCIEGDVNHALWLVEKMENLGYHCNARTYGALVNGLCKIGDTSGALECLKKM 206

Query: 196 VDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
           V   + P+   Y  +L+G  K   V  A     EM + V  +P NV  Y+  +  L    
Sbjct: 207 VKRNLGPNVVVYNAILDGLCKRGLVGEALGLLHEMGV-VNVEP-NVVTYNCLIQGLCGEF 264

Query: 256 DGIYETVNSLKRMM-ERGCNPGMTFFKLAFEE-CLTGQNLRGAEFIWGAMVGRIGFRPDT 313
            G  E V     M+ E+G  P +  F +  +  C  G  LR AE + G MV RIG  P+ 
Sbjct: 265 GGWREGVGLFNEMVAEKGIVPDVQTFSILVDGFCKEGLLLR-AESVVGFMV-RIGVEPNV 322

Query: 314 HMYNMMISLYCYSN-------------------------------------ETGAAMKLL 336
             YN +I+ YC  +                                     E   AM LL
Sbjct: 323 VTYNSLIAGYCLRSQMEEAMRVFGLMVREGEGCLPSVVTHNSLIHGWCKVKEVDKAMSLL 382

Query: 337 DEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAA----VRV 392
            EMV  G  PD+ T+  L     + +K   A  LF  M ++  V N + C       ++ 
Sbjct: 383 SEMVGKGLDPDVFTWTSLIGGFCEVKKPLAARELFFTMKEHGQVPNLQTCAVVLDGLLKC 442

Query: 393 YMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVT 452
           ++DS+    A+  ++ M+++         N+++ G+C M  L +A K    +  KG+++ 
Sbjct: 443 WLDSE----AVTLFRAMMKSGLDLDIVIYNIMLDGMCKMGKLNDARKLLSCVLVKGLKID 498

Query: 453 PFALSKLKQILIKARKEAVYEELLKKCK 480
            +  + + + L +       EELL+K K
Sbjct: 499 SYTYNIMIKGLCREGLLDDAEELLRKMK 526



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/230 (25%), Positives = 107/230 (46%), Gaps = 7/230 (3%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVM--EQYGCKHDVFALNSLLSAICRDGKTIDAWQ 191
           ++ T+ S+ + Y +  ++++A+  F +M  E  GC   V   NSL+   C+  +   A  
Sbjct: 321 NVVTYNSLIAGYCLRSQMEEAMRVFGLMVREGEGCLPSVVTHNSLIHGWCKVKEVDKAMS 380

Query: 192 FLRVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLIT 250
            L  + G+ + PD  T+  L+ G+ + +    A++ F  M  E G  P N+      L  
Sbjct: 381 LLSEMVGKGLDPDVFTWTSLIGGFCEVKKPLAARELFFTMK-EHGQVP-NLQTCAVVLDG 438

Query: 251 LLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFR 310
           LLK C    E V   + MM+ G +  +  + +  +       L  A  +   ++ + G +
Sbjct: 439 LLK-CWLDSEAVTLFRAMMKSGLDLDIVIYNIMLDGMCKMGKLNDARKLLSCVLVK-GLK 496

Query: 311 PDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVK 360
            D++ YN+MI   C       A +LL +M  NG  P+  +YN+  + L++
Sbjct: 497 IDSYTYNIMIKGLCREGLLDDAEELLRKMKENGCPPNKCSYNVFVQGLLR 546



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 108/496 (21%), Positives = 190/496 (38%), Gaps = 66/496 (13%)

Query: 31  DVPNLPPTIKTLCEIIANTPSPTVEDVLDK-----TLIRVSQETVEQVLKFSYSHPGPAV 85
           DV  L   I  LC +   T    V  ++ K     TL+ ++       ++   +H    V
Sbjct: 109 DVCTLNIAINCLCHMRKTTLGFAVLGLMTKIGLEPTLVTLNTIVNGLCIEGDVNHALWLV 168

Query: 86  KFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASVFSS 144
           +      Y  N +     +  +V+ L K        + +K M K N+  ++  + ++   
Sbjct: 169 EKMENLGYHCNAR----TYGALVNGLCKIGDTSGALECLKKMVKRNLGPNVVVYNAILDG 224

Query: 145 YVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAIC------RDGKTIDAWQFLRVVDG 198
                 V +A+     M     + +V   N L+  +C      R+G  +       V + 
Sbjct: 225 LCKRGLVGEALGLLHEMGVVNVEPNVVTYNCLIQGLCGEFGGWREGVGLFNEM---VAEK 281

Query: 199 RIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG-C-- 255
            I PD  T++IL++G+ KE  +  A+   G MV  +G +P NV  Y+S    L+ G C  
Sbjct: 282 GIVPDVQTFSILVDGFCKEGLLLRAESVVGFMV-RIGVEP-NVVTYNS----LIAGYCLR 335

Query: 256 DGIYETVNSLKRMMERG--CNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDT 313
             + E +     M+  G  C P +             + +  A  +   MVG+ G  PD 
Sbjct: 336 SQMEEAMRVFGLMVREGEGCLPSVVTHNSLIHGWCKVKEVDKAMSLLSEMVGK-GLDPDV 394

Query: 314 HMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNE 373
             +  +I  +C   +  AA +L   M  +G  P++QT  ++ + L+K     EA  LF  
Sbjct: 395 FTWTSLIGGFCEVKKPLAARELFFTMKEHGQVPNLQTCAVVLDGLLKCWLDSEAVTLFRA 454

Query: 374 MVKNE--------NVLNHENCR-----------AAVRVYMDSDDPYV------------- 401
           M+K+         N++    C+           + V V     D Y              
Sbjct: 455 MMKSGLDLDIVIYNIMLDGMCKMGKLNDARKLLSCVLVKGLKIDSYTYNIMIKGLCREGL 514

Query: 402 ---AIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSK 458
              A +  + M EN C     + N+ V GL   + +  + KY + M +KG  V       
Sbjct: 515 LDDAEELLRKMKENGCPPNKCSYNVFVQGLLRKYDIARSRKYLQIMKDKGFPVDATTAEL 574

Query: 459 LKQILIKARKEAVYEE 474
           L + L    ++  ++E
Sbjct: 575 LIRFLSANEEDKSFKE 590



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 84/358 (23%), Positives = 143/358 (39%), Gaps = 24/358 (6%)

Query: 138 FASVFSSYVVADRVKDAITTFDVMEQYG-CKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           F  +F     +     AI+   ++   G    DV  LN  ++ +C   KT   +  L ++
Sbjct: 77  FNLLFGLVAKSQHYATAISLIKILHSLGDGSADVCTLNIAINCLCHMRKTTLGFAVLGLM 136

Query: 197 DG-RIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
               ++P   T   ++ G   E DV +A     +M   +G+   N   Y + +  L K  
Sbjct: 137 TKIGLEPTLVTLNTIVNGLCIEGDVNHALWLVEKME-NLGYHC-NARTYGALVNGLCKIG 194

Query: 256 DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHM 315
           D     +  LK+M++R   P +  +  A  + L  + L G        +G +   P+   
Sbjct: 195 D-TSGALECLKKMVKRNLGPNVVVYN-AILDGLCKRGLVGEALGLLHEMGVVNVEPNVVT 252

Query: 316 YNMMISLYCYSNETGA---AMKLLDEMVY-NGAFPDIQTYNILFEFLVKGRKLWEASGLF 371
           YN +I   C   E G     + L +EMV   G  PD+QT++IL +   K   L  A  + 
Sbjct: 253 YNCLIQGLC--GEFGGWREGVGLFNEMVAEKGIVPDVQTFSILVDGFCKEGLLLRAESVV 310

Query: 372 NEMVK---NENVLNHENCRAA--VRVYMDSDDPYVAIKFWKYMIENH--CSDLSETGNLL 424
             MV+     NV+ + +  A   +R  M+      A++ +  M+     C     T N L
Sbjct: 311 GFMVRIGVEPNVVTYNSLIAGYCLRSQMEE-----AMRVFGLMVREGEGCLPSVVTHNSL 365

Query: 425 VAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKCKAH 482
           + G C +  + +A+     M  KG+    F  + L     + +K     EL    K H
Sbjct: 366 IHGWCKVKEVDKAMSLLSEMVGKGLDPDVFTWTSLIGGFCEVKKPLAARELFFTMKEH 423


>gi|357493977|ref|XP_003617277.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355518612|gb|AET00236.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 502

 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 79/327 (24%), Positives = 143/327 (43%), Gaps = 37/327 (11%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           ++  F  +  +YV A ++++    F ++ + G    + A N+LL +I      +    +L
Sbjct: 76  NVVVFDLLIRTYVQARKLREGFEAFQLLRKRGFCVSINACNALLGSI------VKVRVYL 129

Query: 194 RVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
             ++ + +KP   TY  L+ G  KE    +AK    +M + VG+ PD    ++  L+   
Sbjct: 130 SEMEAKGLKPGLFTYNALINGLCKEGGYESAKCVLDKM-LGVGFCPD-AATFNPVLVESF 187

Query: 253 KGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD 312
           +  D ++E       M++ G  P +  F            L  A   +  M G +G  PD
Sbjct: 188 RKED-VWEAERVFNEMLQCGVVPDLISFSSIIGVFSRNGELGRALAYFEKMKG-VGLVPD 245

Query: 313 THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFN 372
           T +Y ++I+ YC +N+   A+K+ +EMV      D+ TYN L   L +G+ L +A  LF 
Sbjct: 246 TVIYTILINGYCRNNDVSGALKVRNEMVERSCVMDVVTYNTLLNGLCRGKMLDDADELFK 305

Query: 373 EMVKNE--------NVLNHENCR-------------AAVRVYMDSDDPYVAIKFWKYMIE 411
           EMV+            L H  C+               +R  M+      A + W+ MI 
Sbjct: 306 EMVERGVFPDFYTLTTLIHGYCKDGNMTKALSLFETITLRSEMEK-----AKELWRDMIS 360

Query: 412 NHCSDLSETGNLLVAGLCDMHMLPEAV 438
                   + ++L+ G C + ++ E++
Sbjct: 361 REIFPHYISFSILINGFCSLGLVSESL 387



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 86/196 (43%), Gaps = 3/196 (1%)

Query: 265 LKRMMERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLY 323
           L  M  +G  PG+ T+  L    C  G     A+ +   M+G +GF PD   +N ++   
Sbjct: 129 LSEMEAKGLKPGLFTYNALINGLCKEG-GYESAKCVLDKMLG-VGFCPDAATFNPVLVES 186

Query: 324 CYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNH 383
               +   A ++ +EM+  G  PD+ +++ +     +  +L  A   F +M     V + 
Sbjct: 187 FRKEDVWEAERVFNEMLQCGVVPDLISFSSIIGVFSRNGELGRALAYFEKMKGVGLVPDT 246

Query: 384 ENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKG 443
                 +  Y  ++D   A+K    M+E  C     T N L+ GLC   ML +A +  K 
Sbjct: 247 VIYTILINGYCRNNDVSGALKVRNEMVERSCVMDVVTYNTLLNGLCRGKMLDDADELFKE 306

Query: 444 MAEKGIQVTPFALSKL 459
           M E+G+    + L+ L
Sbjct: 307 MVERGVFPDFYTLTTL 322



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 72/322 (22%), Positives = 125/322 (38%), Gaps = 51/322 (15%)

Query: 136 ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRV 195
           ATF  V       + V +A   F+ M Q G   D+ + +S++    R+G+   A  +   
Sbjct: 177 ATFNPVLVESFRKEDVWEAERVFNEMLQCGVVPDLISFSSIIGVFSRNGELGRALAYFEK 236

Query: 196 VDG-RIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG 254
           + G  + PD   Y IL+ G+ +  DV+ A K   EMV E     D V  Y++ L  L +G
Sbjct: 237 MKGVGLVPDTVIYTILINGYCRNNDVSGALKVRNEMV-ERSCVMD-VVTYNTLLNGLCRG 294

Query: 255 CDGIYETVNSL-KRMMERGCNP----------------GMTFFKLAFEECLTGQNLRGAE 297
              + +  + L K M+ERG  P                 MT     FE       +  A+
Sbjct: 295 --KMLDDADELFKEMVERGVFPDFYTLTTLIHGYCKDGNMTKALSLFETITLRSEMEKAK 352

Query: 298 FIWGAMVGRIGFRPDTHMYNMMISLYC--------------YSNETGAAMKLLDEMVYNG 343
            +W  M+ R  F P    ++++I+ +C               +     A   L+ MV  G
Sbjct: 353 ELWRDMISREIF-PHYISFSILINGFCSLGLVSESLIKGYLRAGNVSKANDFLNTMVSEG 411

Query: 344 A--------------FPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAA 389
                           PD+ TYN +     +  ++ EA  + ++M+      +     + 
Sbjct: 412 VPPDCITYNTLINRLLPDLVTYNAILGGFSRHGRMQEAEMVLHKMIDKGINPDKSTYTSV 471

Query: 390 VRVYMDSDDPYVAIKFWKYMIE 411
           +  Y+  D+   A +    M++
Sbjct: 472 INGYVSKDNMKEAFRVHDEMLQ 493



 Score = 46.2 bits (108), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 55/253 (21%), Positives = 98/253 (38%), Gaps = 45/253 (17%)

Query: 138 FASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ--FLRV 195
           +  + + Y   + V  A+   + M +  C  DV   N+LL+ +CR GK +D     F  +
Sbjct: 249 YTILINGYCRNNDVSGALKVRNEMVERSCVMDVVTYNTLLNGLCR-GKMLDDADELFKEM 307

Query: 196 VDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDP-----------DNVPAY 244
           V+  + PD  T   L+ G+ K+ ++  A   F  + +    +            +  P Y
Sbjct: 308 VERGVFPDFYTLTTLIHGYCKDGNMTKALSLFETITLRSEMEKAKELWRDMISREIFPHY 367

Query: 245 DSYLI-------------TLLKG---CDGIYETVNSLKRMMERGCNPGMTFFK------- 281
            S+ I             +L+KG      + +  + L  M+  G  P    +        
Sbjct: 368 ISFSILINGFCSLGLVSESLIKGYLRAGNVSKANDFLNTMVSEGVPPDCITYNTLINRLL 427

Query: 282 ---LAFEECLTGQNLRG----AEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMK 334
              + +   L G +  G    AE +   M+ + G  PD   Y  +I+ Y   +    A +
Sbjct: 428 PDLVTYNAILGGFSRHGRMQEAEMVLHKMIDK-GINPDKSTYTSVINGYVSKDNMKEAFR 486

Query: 335 LLDEMVYNGAFPD 347
           + DEM+  G  PD
Sbjct: 487 VHDEMLQRGFVPD 499


>gi|297844892|ref|XP_002890327.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336169|gb|EFH66586.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 903

 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 92/352 (26%), Positives = 142/352 (40%), Gaps = 51/352 (14%)

Query: 141 VFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGR 199
           +   Y    R+ DA+   D M + G + +    NSL++  C+ G+ ++A Q L R+ D  
Sbjct: 337 LIDGYCRNGRICDAVRVHDYMIEMGVRTNTTICNSLINGYCKSGQLVEAEQILTRMNDWS 396

Query: 200 IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD--G 257
           +KPD+ TY  L++G+ +   V  A K  G M        + VP   +Y I LLKG    G
Sbjct: 397 LKPDHHTYNTLVDGYCRAGHVDEALKLCGRMC-----QKEVVPTVMTYNI-LLKGYSRIG 450

Query: 258 IYETVNSL-KRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMY 316
            +  V SL K M++RG            E      +   A  +W  ++ R G   DT   
Sbjct: 451 AFHDVLSLWKMMLKRGVTANEISCSTLLEALFKLGDFDEAMKLWENVLAR-GLLTDTITL 509

Query: 317 NMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK 376
           N+MIS  C   +   A ++LD +      PD+QTY  L         L EA         
Sbjct: 510 NVMISGLCKMEKVNEAKEILDNVNIFRCKPDVQTYQALSHGYYNVGNLKEA--------- 560

Query: 377 NENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIE--------NHCSDL----------- 417
                       AV+ +M+    +  I+ +  +I         N  +DL           
Sbjct: 561 -----------FAVKDFMEKKGIFPTIEMYNTLISGAFKYKHLNKVADLVIELRARGLTP 609

Query: 418 -SETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARK 468
              T   L+ G C++ M+ +A      M EKGI +     SK+   L +  K
Sbjct: 610 TVATYGALITGWCNIGMIDKAYATCFEMIEKGITLNVNICSKIANSLFRLDK 661



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 69/306 (22%), Positives = 122/306 (39%), Gaps = 40/306 (13%)

Query: 133 LSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ- 191
           L++ T  S+ + Y +   V+       +M + G   +V    SL+ + C+ G   +A Q 
Sbjct: 259 LNVVTCNSLINGYAMIGDVEGMTRVLRLMSERGVSRNVVTFTSLIKSYCKKGLMEEAEQV 318

Query: 192 FLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITL 251
           F  V + ++ PD   + +L++G+ +   + +A +    M IE+G   +            
Sbjct: 319 FELVTEKKLVPDQHMHGVLIDGYCRNGRICDAVRVHDYM-IEMGVRTNTTI--------- 368

Query: 252 LKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRP 311
                                CN  +  +      C +GQ L  AE I   M      +P
Sbjct: 369 ---------------------CNSLINGY------CKSGQ-LVEAEQILTRM-NDWSLKP 399

Query: 312 DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLF 371
           D H YN ++  YC +     A+KL   M      P + TYNIL +   +     +   L+
Sbjct: 400 DHHTYNTLVDGYCRAGHVDEALKLCGRMCQKEVVPTVMTYNILLKGYSRIGAFHDVLSLW 459

Query: 372 NEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDM 431
             M+K     N  +C   +       D   A+K W+ ++       + T N++++GLC M
Sbjct: 460 KMMLKRGVTANEISCSTLLEALFKLGDFDEAMKLWENVLARGLLTDTITLNVMISGLCKM 519

Query: 432 HMLPEA 437
             + EA
Sbjct: 520 EKVNEA 525



 Score = 43.5 bits (101), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 65/314 (20%), Positives = 109/314 (34%), Gaps = 38/314 (12%)

Query: 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR 194
           + T+ ++   Y     +K+A    D ME+ G    +   N+L+S   +          + 
Sbjct: 541 VQTYQALSHGYYNVGNLKEAFAVKDFMEKKGIFPTIEMYNTLISGAFKYKHLNKVADLVI 600

Query: 195 VVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPD------------NV 241
            +  R + P   TY  L+ GW     +  A  T  EM IE G   +             +
Sbjct: 601 ELRARGLTPTVATYGALITGWCNIGMIDKAYATCFEM-IEKGITLNVNICSKIANSLFRL 659

Query: 242 PAYDSYLITLLKGCDG--IYETVNSLKRMMERGCN----------------------PGM 277
             +D   + L K  D   +     SLK  +E                          P  
Sbjct: 660 DKFDEACLLLQKIVDFDLLLPGYQSLKEFLEPSATTCLKTQKIAESVENSTPKKLLVPNN 719

Query: 278 TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLD 337
             + +A         L  A+ ++  ++    F PD + Y ++I       +   A  L D
Sbjct: 720 IVYNVAIAGLCKAGKLTDAQKLFSDLLSSDRFIPDEYTYTILIHGCAIDGDINKAFNLRD 779

Query: 338 EMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSD 397
           EM   G  P+I TYN L + L K   +  A  L  ++ +     N       +   + S 
Sbjct: 780 EMALKGIIPNIVTYNALIKGLCKLGNVDRAQRLLRKLPQKGTTPNAITYNTLIDGLIKSG 839

Query: 398 DPYVAIKFWKYMIE 411
           D   A++  + MIE
Sbjct: 840 DVAEAMRLKEKMIE 853


>gi|297847728|ref|XP_002891745.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297337587|gb|EFH68004.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 472

 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 83/335 (24%), Positives = 148/335 (44%), Gaps = 43/335 (12%)

Query: 81  PGPAVKFFRWSAYQLNDKHSPYAWNL-----VVDLLGKNCLFDAMWDAIKSMKKEN--VL 133
           P  A+K FR    +  +   P+ ++L     ++  LG + +FD +   +  +K +   V 
Sbjct: 22  PSAAIKLFRNPDPESTNPKRPFRYSLLCYDIIITKLGGSKMFDELDQVLLQLKTDTRIVP 81

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           +   F +V + +        A+  FD M QY C+  V +LNSLL+ + + G+     + L
Sbjct: 82  TEILFCNVINFFGRGRLPSRALHMFDEMPQYRCQRTVKSLNSLLNTLLKCGEFEKMKERL 141

Query: 194 RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLK 253
             +D   KPD  TY IL+ G  +     +A K F EMV +    P  V  + + +  L K
Sbjct: 142 SSIDEFGKPDACTYNILIHGCSQRGCFDDALKLFDEMV-KKKVKPTGV-TFGTLIHGLCK 199

Query: 254 GCD---------------GIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEF 298
                             G+  TV+    +++  C  G   F    ++      ++    
Sbjct: 200 NLRVKEALKMKQDMLKVYGVRPTVHIYASLVKALCQIGELSFAFKLKDEAYEGKIKVDSA 259

Query: 299 IWGAMVGRI-------------------GFRPDTHMYNMMISLYCYSNETGAAMKLLDEM 339
           I+  ++  +                   G +PDT  YN++I+ +C  N++ +A ++LDEM
Sbjct: 260 IYSTLISSLIKAGRSNEVSRILEEMSEKGCKPDTVTYNVLINGFCVENDSESAYRVLDEM 319

Query: 340 VYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
           V  G  PD+ +YN++   L + +K  EA+ LF +M
Sbjct: 320 VEKGLKPDVISYNMILGVLFRIQKWEEATYLFEDM 354



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 68/291 (23%), Positives = 117/291 (40%), Gaps = 11/291 (3%)

Query: 89  RWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLA-TFASVFSSYVV 147
           R S+     K     +N+++    +   FD        M K+ V     TF ++      
Sbjct: 140 RLSSIDEFGKPDACTYNILIHGCSQRGCFDDALKLFDEMVKKKVKPTGVTFGTLIHGLCK 199

Query: 148 ADRVKDAIT-TFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDND 205
             RVK+A+    D+++ YG +  V    SL+ A+C+ G+   A++      +G+IK D+ 
Sbjct: 200 NLRVKEALKMKQDMLKVYGVRPTVHIYASLVKALCQIGELSFAFKLKDEAYEGKIKVDSA 259

Query: 206 TYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC--DGIYETVN 263
            Y+ L+    K        +   EM  E G  PD V    +Y + +   C  +       
Sbjct: 260 IYSTLISSLIKAGRSNEVSRILEEMS-EKGCKPDTV----TYNVLINGFCVENDSESAYR 314

Query: 264 SLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLY 323
            L  M+E+G  P +  + +        Q    A +++  M  R G  PDT  Y ++    
Sbjct: 315 VLDEMVEKGLKPDVISYNMILGVLFRIQKWEEATYLFEDMPRR-GCSPDTLSYRIVFDGL 373

Query: 324 CYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
           C   +   A  +LDEM++ G  P         + L +  KL   S + + M
Sbjct: 374 CEGLQFEEAAAILDEMLFKGYKPRRDRLERFLQKLCESGKLEILSKVISSM 424


>gi|8778411|gb|AAF79419.1|AC025808_1 F18O14.1 [Arabidopsis thaliana]
          Length = 689

 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 92/355 (25%), Positives = 145/355 (40%), Gaps = 51/355 (14%)

Query: 138 FASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVV 196
           +  +   Y    +++DA+   D M + G + +    NSL++  C+ G+ ++A Q F R+ 
Sbjct: 119 YGVLMDGYCRTGQIRDAVRVHDNMIEIGVRTNTTICNSLINGYCKSGQLVEAEQIFSRMN 178

Query: 197 DGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD 256
           D  +KPD+ TY  L++G+ +   V  A K   +M        + VP   +Y I LLKG  
Sbjct: 179 DWSLKPDHHTYNTLVDGYCRAGYVDEALKLCDQM-----CQKEVVPTVMTYNI-LLKGYS 232

Query: 257 --GIYETVNSL-KRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDT 313
             G +  V SL K M++RG N          E      +   A  +W  ++ R G   DT
Sbjct: 233 RIGAFHDVLSLWKMMLKRGVNADEISCSTLLEALFKLGDFNEAMKLWENVLAR-GLLTDT 291

Query: 314 HMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNE 373
              N+MIS  C   +   A ++LD +      P +QTY  L     K   L EA      
Sbjct: 292 ITLNVMISGLCKMEKVNEAKEILDNVNIFRCKPAVQTYQALSHGYYKVGNLKEA------ 345

Query: 374 MVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIE--------NHCSDL-------- 417
                          AV+ YM+    +  I+ +  +I         N  +DL        
Sbjct: 346 --------------FAVKEYMERKGIFPTIEMYNTLISGAFKYRHLNKVADLVIELRARG 391

Query: 418 ----SETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARK 468
                 T   L+ G C++ M+ +A      M EKGI +     SK+   L +  K
Sbjct: 392 LTPTVATYGALITGWCNIGMIDKAYATCFEMIEKGITLNVNICSKIANSLFRLDK 446



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 66/306 (21%), Positives = 123/306 (40%), Gaps = 40/306 (13%)

Query: 133 LSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQF 192
           L++ T+ S+ + Y +   V+       +M + G   +V    SL+   C+ G   +A   
Sbjct: 44  LNVVTYNSLINGYAMIGDVEGMTRVLRLMSERGVSRNVVTYTSLIKGYCKKGLMEEAEHV 103

Query: 193 LRVV-DGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITL 251
             ++ + ++  D   Y +L++G+ +   + +A +    M IE+G   +            
Sbjct: 104 FELLKEKKLVADQHMYGVLMDGYCRTGQIRDAVRVHDNM-IEIGVRTNTTI--------- 153

Query: 252 LKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRP 311
                                CN  +  +      C +GQ L  AE I+  M      +P
Sbjct: 154 ---------------------CNSLINGY------CKSGQ-LVEAEQIFSRM-NDWSLKP 184

Query: 312 DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLF 371
           D H YN ++  YC +     A+KL D+M      P + TYNIL +   +     +   L+
Sbjct: 185 DHHTYNTLVDGYCRAGYVDEALKLCDQMCQKEVVPTVMTYNILLKGYSRIGAFHDVLSLW 244

Query: 372 NEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDM 431
             M+K     +  +C   +       D   A+K W+ ++       + T N++++GLC M
Sbjct: 245 KMMLKRGVNADEISCSTLLEALFKLGDFNEAMKLWENVLARGLLTDTITLNVMISGLCKM 304

Query: 432 HMLPEA 437
             + EA
Sbjct: 305 EKVNEA 310



 Score = 40.0 bits (92), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 25/100 (25%), Positives = 42/100 (42%)

Query: 275 PGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMK 334
           P    + +A         L  A  ++  ++    F PD + Y ++I     + +   A  
Sbjct: 502 PNNIVYNVAIAGLCKAGKLEDARKLFSDLLSSDRFIPDEYTYTILIHGCAIAGDINKAFT 561

Query: 335 LLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
           L DEM   G  P+I TYN L + L K   +  A  L +++
Sbjct: 562 LRDEMALKGIIPNIVTYNALIKGLCKLGNVDRAQRLLHKL 601


>gi|356560325|ref|XP_003548443.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial-like [Glycine max]
          Length = 746

 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 135/290 (46%), Gaps = 22/290 (7%)

Query: 105 NLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVMEQ 163
           N +VD L K+       +    MK + +  + AT+ ++ S++   + +  A+  F+ M  
Sbjct: 432 NTLVDGLCKHGRVHRAVEFFNEMKGKGLKGNAATYTALISAFCGVNNINRAMQCFEEMLS 491

Query: 164 YGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKP-----DNDTYAILLEGWEKER 218
            GC  D     SL+S +C  G+  DA     VV  ++K      D   Y +L+ G+ K++
Sbjct: 492 SGCSPDAVVYYSLISGLCIAGRMNDA----SVVVSKLKLAGFSLDRSCYNVLISGFCKKK 547

Query: 219 DVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNS-LKRMMERGCNPGM 277
            +    +   EM  E G  PD +  Y++ LI+ L G  G + T +  +++M++ G  P +
Sbjct: 548 KLERVYELLTEME-ETGVKPDTI-TYNT-LISYL-GKTGDFATASKVMEKMIKEGLRPSV 603

Query: 278 TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLD 337
             +        + +N+     I+G M       P+T +YN++I   C +N+   A+ L++
Sbjct: 604 VTYGAIIHAYCSKKNVDEGMKIFGEMCSTSKVPPNTVIYNILIDALCRNNDVDRAISLME 663

Query: 338 EMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCR 387
           +M      P+  TYN + + +   + L +A  L + MV+       E CR
Sbjct: 664 DMKVKRVRPNTTTYNAILKGVRDKKMLHKAFELMDRMVE-------EACR 706



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 90/434 (20%), Positives = 162/434 (37%), Gaps = 96/434 (22%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVM 161
           + N ++  LG+      M + +  M+K  +  S+ TF  + +    A R+ +A+  FD +
Sbjct: 283 SCNALLTWLGRGRDIKRMNELLAEMEKRKIRPSVVTFGILVNHLCKARRIDEALQVFDRL 342

Query: 162 EQ------YGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVD-GRI-KPDNDTYAILLEG 213
                    G + DV   N+L+  +C+ GK  D    L  +  G I +P+  TY  L++G
Sbjct: 343 RGKGGSNWVGVEPDVVLFNTLIDGLCKVGKEEDGLSLLEEMKMGNINRPNTVTYNCLIDG 402

Query: 214 WEKERDVANAKKTFGEMVIEVGWDPD---------------------------------- 239
           + K  +   A + F +M  E G  P+                                  
Sbjct: 403 FFKAGNFDRAHELFRQMN-EEGVQPNVITLNTLVDGLCKHGRVHRAVEFFNEMKGKGLKG 461

Query: 240 NVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNP-GMTFFKLAFEECLTGQ------- 291
           N   Y + LI+   G + I   +   + M+  GC+P  + ++ L    C+ G+       
Sbjct: 462 NAATYTA-LISAFCGVNNINRAMQCFEEMLSSGCSPDAVVYYSLISGLCIAGRMNDASVV 520

Query: 292 ----------------NLRGAEFIWGAMVGRI----------GFRPDTHMYNMMISLYCY 325
                           N+  + F     + R+          G +PDT  YN +IS    
Sbjct: 521 VSKLKLAGFSLDRSCYNVLISGFCKKKKLERVYELLTEMEETGVKPDTITYNTLISYLGK 580

Query: 326 SNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNE------- 378
           + +   A K++++M+  G  P + TY  +       + + E   +F EM           
Sbjct: 581 TGDFATASKVMEKMIKEGLRPSVVTYGAIIHAYCSKKNVDEGMKIFGEMCSTSKVPPNTV 640

Query: 379 --NVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPE 436
             N+L    CR        ++D   AI   + M        + T N ++ G+ D  ML +
Sbjct: 641 IYNILIDALCR--------NNDVDRAISLMEDMKVKRVRPNTTTYNAILKGVRDKKMLHK 692

Query: 437 AVKYAKGMAEKGIQ 450
           A +    M E+  +
Sbjct: 693 AFELMDRMVEEACR 706



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 75/328 (22%), Positives = 127/328 (38%), Gaps = 21/328 (6%)

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV---DGRIKPDNDTYAILLEGWEKE 217
           + + G   D F L  L+  +C D K   AW+ L  V    G +  D  +   LL    + 
Sbjct: 237 LGERGVFPDGFKLTQLVGKLCGDQKNGVAWEVLHCVMRLGGAV--DAASCNALLTWLGRG 294

Query: 218 RDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDG--IYETVNSLKRMMER---- 271
           RD+    +   EM           P+  ++ I +   C    I E +    R+  +    
Sbjct: 295 RDIKRMNELLAEM-----EKRKIRPSVVTFGILVNHLCKARRIDEALQVFDRLRGKGGSN 349

Query: 272 --GCNPGMTFFKLAFEE-CLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNE 328
             G  P +  F    +  C  G+   G   +    +G I  RP+T  YN +I  +  +  
Sbjct: 350 WVGVEPDVVLFNTLIDGLCKVGKEEDGLSLLEEMKMGNIN-RPNTVTYNCLIDGFFKAGN 408

Query: 329 TGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRA 388
              A +L  +M   G  P++ T N L + L K  ++  A   FNEM       N     A
Sbjct: 409 FDRAHELFRQMNEEGVQPNVITLNTLVDGLCKHGRVHRAVEFFNEMKGKGLKGNAATYTA 468

Query: 389 AVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448
            +  +   ++   A++ ++ M+ + CS  +     L++GLC    + +A      +   G
Sbjct: 469 LISAFCGVNNINRAMQCFEEMLSSGCSPDAVVYYSLISGLCIAGRMNDASVVVSKLKLAG 528

Query: 449 IQVTPFALSKLKQILIKARK-EAVYEEL 475
             +     + L     K +K E VYE L
Sbjct: 529 FSLDRSCYNVLISGFCKKKKLERVYELL 556


>gi|225436658|ref|XP_002276327.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Vitis vinifera]
          Length = 728

 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 91/352 (25%), Positives = 154/352 (43%), Gaps = 45/352 (12%)

Query: 102 YAWNLVVDLLGKNC-LFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFD 159
           +  N+V+  L +N  +F+AM   I+ M +++V   + ++ ++ +    A ++K+A+    
Sbjct: 145 FIMNIVLKGLCRNGGVFEAMG-LIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLL 203

Query: 160 VMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKER 218
            ME  GC  +     +L+  +C+DG+  +A + L  +  +    D   Y  L+ G+    
Sbjct: 204 EMEAAGCFPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNG 263

Query: 219 DVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNS-LKRMMERGCNPGM 277
           ++   K+ F EM+ +      NV  Y   +  L +   G ++  N+ L  M E G +P +
Sbjct: 264 NLDRGKELFDEMLGK--GISANVVTYSCLVHGLCR--LGQWKEANTVLNAMAEHGIHPDV 319

Query: 278 -TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLL 336
            T+  L    C  G+     + +   MV + G  P    YN+++S  C       A K+L
Sbjct: 320 VTYTGLIDGLCKDGRATHAMDLL-NLMVEK-GEEPSNVTYNVLLSGLCKEGLVIDAFKIL 377

Query: 337 DEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDS 396
             M+  G   D+ TYN L + L    K+ EA  LFN M  NEN L               
Sbjct: 378 RMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCL--------------- 422

Query: 397 DDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448
            +P V                  T N+L+ GLC    L +AVK  + M +KG
Sbjct: 423 -EPNVF-----------------TFNMLIGGLCKEGRLTKAVKIHRKMVKKG 456



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 94/375 (25%), Positives = 158/375 (42%), Gaps = 31/375 (8%)

Query: 84  AVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVF 142
           AV  F  SA   N   S    N +VD L ++  +   +   + M   +VL S  + +++ 
Sbjct: 58  AVSLFH-SALDFNLLPSWATCNFLVDALARSRNYGLAFSVYRRMTHVDVLPSFGSLSALI 116

Query: 143 SSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR--I 200
             +  A + +       ++ + G   +VF +N +L  +CR+G   +A   +R + GR  +
Sbjct: 117 ECFADAQKPQLGFGVVGLVLKRGFTVNVFIMNIVLKGLCRNGGVFEAMGLIREM-GRKSV 175

Query: 201 KPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC--DG- 257
            PD  +Y  L+ G  K + +  A     EM    G  P++V        TL+ G   DG 
Sbjct: 176 SPDIVSYNTLINGLCKAKKLKEAVGLLLEME-AAGCFPNSVTC-----TTLMDGLCKDGR 229

Query: 258 IYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYN 317
           + E +  L+ M ++G +  +  +           NL   + ++  M+G+ G   +   Y+
Sbjct: 230 MDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDRGKELFDEMLGK-GISANVVTYS 288

Query: 318 MMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV-K 376
            ++   C   +   A  +L+ M  +G  PD+ TY  L + L K  +   A  L N MV K
Sbjct: 289 CLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEK 348

Query: 377 NE-------NVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLC 429
            E       NVL    C+  + +         A K  + MIE        T N L+ GLC
Sbjct: 349 GEEPSNVTYNVLLSGLCKEGLVID--------AFKILRMMIEKGKKADVVTYNTLMKGLC 400

Query: 430 DMHMLPEAVKYAKGM 444
           D   + EA+K    M
Sbjct: 401 DKGKVDEALKLFNSM 415



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 113/245 (46%), Gaps = 11/245 (4%)

Query: 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR 194
           + T+  +        R   A+   ++M + G +      N LLS +C++G  IDA++ LR
Sbjct: 319 VVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILR 378

Query: 195 V-VDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLK 253
           + ++   K D  TY  L++G   +  V  A K F  M     +D +N    + +   +L 
Sbjct: 379 MMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSM-----FDNENCLEPNVFTFNMLI 433

Query: 254 G--C-DG-IYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGF 309
           G  C +G + + V   ++M+++G    +  + +    CL    ++ A  +W  ++  +GF
Sbjct: 434 GGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAMELWKQVL-DLGF 492

Query: 310 RPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASG 369
            P++  Y+++I  +C       A  L  EM  +G  P +  YN L   L K   L +A  
Sbjct: 493 VPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLMASLCKEGSLEQAKS 552

Query: 370 LFNEM 374
           LF EM
Sbjct: 553 LFQEM 557



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 71/273 (26%), Positives = 121/273 (44%), Gaps = 15/273 (5%)

Query: 116 LFDAMWDAIKSMKKENVL--SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFAL 173
           LF++M+D       EN L  ++ TF  +        R+  A+     M + G   ++   
Sbjct: 411 LFNSMFD------NENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTY 464

Query: 174 NSLLSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVI 232
           N LL    + GK  +A +  + V+D    P++ TY+IL++G+ K R +  AK  F EM  
Sbjct: 465 NMLLGGCLKAGKIKEAMELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRT 524

Query: 233 EVGWDPDNVPAYDSYLITLLKGCDGIYETVNSL-KRMMERGCNPGMTFFKLAFEECLTGQ 291
             G +P  +  Y++ + +L K  +G  E   SL + M    C P +  F    +  L   
Sbjct: 525 H-GLNPA-LFDYNTLMASLCK--EGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLKAG 580

Query: 292 NLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTY 351
           + +  + +   MV  +G RPD   ++ +I+      E   A   L+ MV +G  PD   Y
Sbjct: 581 DFQFVKELQMKMV-EMGLRPDALTFSTLINRLSKLGELDEAKSALERMVASGFTPDALVY 639

Query: 352 NILFEFLVKGRKLWEASGLFNEMVKNENVLNHE 384
           + L + L       E   L ++M     VL+ +
Sbjct: 640 DSLLKGLSSKGDTTEIINLLHQMAAKGTVLDRK 672


>gi|115482788|ref|NP_001064987.1| Os10g0501700 [Oryza sativa Japonica Group]
 gi|22165069|gb|AAM93686.1| putative leaf protein [Oryza sativa Japonica Group]
 gi|31432904|gb|AAP54480.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
           Japonica Group]
 gi|113639596|dbj|BAF26901.1| Os10g0501700 [Oryza sativa Japonica Group]
 gi|125575306|gb|EAZ16590.1| hypothetical protein OsJ_32064 [Oryza sativa Japonica Group]
          Length = 454

 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 91/394 (23%), Positives = 163/394 (41%), Gaps = 24/394 (6%)

Query: 95  LNDKHSPYA--WNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVK 152
           L+ + SP A  +N ++  L K    D   + +  M   N     T+ S+   Y  + + +
Sbjct: 38  LDRRVSPDAVTYNSIIAALSKAQAMDRAMEVLTVMVMPNCF---TYNSIMHGYCSSGQSE 94

Query: 153 DAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILL 211
            AI  F  M   G + DV   NSL+  +C++GK  +A + F  +V   +KPD  TY  LL
Sbjct: 95  KAIGIFRKMCSDGIEPDVVTYNSLMDYLCKNGKCTEARKIFDSMVKRGLKPDITTYGTLL 154

Query: 212 EGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMER 271
            G+  +  +         MV + G   D+     + LI      + + E V    +M ++
Sbjct: 155 HGYASKGALVEMHDLLALMV-QNGMQLDH--HVFNILICAYTKQEKVDEVVLVFSKMRQQ 211

Query: 272 GCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGA 331
           G  P    ++   +       L  A   +  M+ + G  P+  +Y  +I   C  ++   
Sbjct: 212 GLTPNAVNYRTVIDGLCKLGRLDDAMLNFEQMIDK-GLTPNVVVYTSLIHALCTYDKWEK 270

Query: 332 AMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVR 391
           A +L+ E++  G  P+I  +N + + L K  ++ E+  LF       ++L H      V 
Sbjct: 271 AEELIFEILDQGINPNIVFFNTILDSLCKEGRVIESKKLF-------DLLGHIGVNPDVI 323

Query: 392 VYMDSDDPYV-------AIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGM 444
            Y    D Y        A+K    M+       S T + L+ G C ++ + +A+   K M
Sbjct: 324 TYSTLIDGYCLAGKMDGAMKLLTGMVSVGLKPDSVTYSTLINGYCKINRMEDALALFKEM 383

Query: 445 AEKGIQVTPFALSKLKQILIKARKEAVYEELLKK 478
              G+       + +   L + R+ A  +EL  +
Sbjct: 384 ESNGVNPDIITYNIILHGLFRTRRTAAAKELYAR 417



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 66/252 (26%), Positives = 117/252 (46%), Gaps = 27/252 (10%)

Query: 138 FASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDA-WQFLRVV 196
           F  +  +Y   ++V + +  F  M Q G   +     +++  +C+ G+  DA   F +++
Sbjct: 185 FNILICAYTKQEKVDEVVLVFSKMRQQGLTPNAVNYRTVIDGLCKLGRLDDAMLNFEQMI 244

Query: 197 DGRIKPDNDTYAILLEG------WEKERDVANAKKTFGEMVIEV---GWDPDNVPAYDSY 247
           D  + P+   Y  L+        WEK            E++ E+   G +P N+  +++ 
Sbjct: 245 DKGLTPNVVVYTSLIHALCTYDKWEKAE----------ELIFEILDQGINP-NIVFFNTI 293

Query: 248 LITLLKGCDG-IYETVNSLKRMMERGCNPG-MTFFKLAFEECLTGQNLRGAEFIWGAMVG 305
           L +L K  +G + E+      +   G NP  +T+  L    CL G+ + GA  +   MV 
Sbjct: 294 LDSLCK--EGRVIESKKLFDLLGHIGVNPDVITYSTLIDGYCLAGK-MDGAMKLLTGMVS 350

Query: 306 RIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLW 365
            +G +PD+  Y+ +I+ YC  N    A+ L  EM  NG  PDI TYNI+   L + R+  
Sbjct: 351 -VGLKPDSVTYSTLINGYCKINRMEDALALFKEMESNGVNPDIITYNIILHGLFRTRRTA 409

Query: 366 EASGLFNEMVKN 377
            A  L+  + ++
Sbjct: 410 AAKELYARITES 421



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 74/280 (26%), Positives = 116/280 (41%), Gaps = 8/280 (2%)

Query: 197 DGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD 256
           DGR  PD  +Y  +++G  KE DV  A  T+ EM ++    PD V  Y+S +I  L    
Sbjct: 4   DGRCPPDVVSYNTIIDGLFKEGDVDKAYITYHEM-LDRRVSPDAV-TYNS-IIAALSKAQ 60

Query: 257 GIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMY 316
            +   +  L  M+   C    T+  +    C +GQ+ + A  I+  M    G  PD   Y
Sbjct: 61  AMDRAMEVLTVMVMPNC---FTYNSIMHGYCSSGQSEK-AIGIFRKMCSD-GIEPDVVTY 115

Query: 317 NMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK 376
           N ++   C + +   A K+ D MV  G  PDI TY  L         L E   L   MV+
Sbjct: 116 NSLMDYLCKNGKCTEARKIFDSMVKRGLKPDITTYGTLLHGYASKGALVEMHDLLALMVQ 175

Query: 377 NENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPE 436
           N   L+H      +  Y   +     +  +  M +   +  +     ++ GLC +  L +
Sbjct: 176 NGMQLDHHVFNILICAYTKQEKVDEVVLVFSKMRQQGLTPNAVNYRTVIDGLCKLGRLDD 235

Query: 437 AVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELL 476
           A+   + M +KG+       + L   L    K    EEL+
Sbjct: 236 AMLNFEQMIDKGLTPNVVVYTSLIHALCTYDKWEKAEELI 275



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 69/317 (21%), Positives = 123/317 (38%), Gaps = 20/317 (6%)

Query: 69  TVEQVLKFSYSHPGPAVKFFRWSAYQLND--KHSPYAWNLVVDLLGKNCLFDAMWDAIKS 126
           T    L   Y+  G  V+     A  + +  +   + +N+++    K    D +      
Sbjct: 148 TTYGTLLHGYASKGALVEMHDLLALMVQNGMQLDHHVFNILICAYTKQEKVDEVVLVFSK 207

Query: 127 MKKENVLSLAT-FASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGK 185
           M+++ +   A  + +V        R+ DA+  F+ M   G   +V    SL+ A+C    
Sbjct: 208 MRQQGLTPNAVNYRTVIDGLCKLGRLDDAMLNFEQMIDKGLTPNVVVYTSLIHALC---- 263

Query: 186 TIDAWQ-----FLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDN 240
           T D W+        ++D  I P+   +  +L+   KE  V  +KK F +++  +G +PD 
Sbjct: 264 TYDKWEKAEELIFEILDQGINPNIVFFNTILDSLCKEGRVIESKKLF-DLLGHIGVNPD- 321

Query: 241 VPAYDSYL--ITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEF 298
           V  Y + +    L    DG    +  L  M+  G  P    +            +  A  
Sbjct: 322 VITYSTLIDGYCLAGKMDG---AMKLLTGMVSVGLKPDSVTYSTLINGYCKINRMEDALA 378

Query: 299 IWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFL 358
           ++  M    G  PD   YN+++     +  T AA +L   +  +G   ++ TYNI+    
Sbjct: 379 LFKEMESN-GVNPDIITYNIILHGLFRTRRTAAAKELYARITESGTQLELSTYNIILMDF 437

Query: 359 VKGRKLWEASGLFNEMV 375
            K   L    G F   V
Sbjct: 438 AKTNSLMMHFGCFRTYV 454


>gi|449456681|ref|XP_004146077.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g53330-like [Cucumis sativus]
          Length = 527

 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 72/317 (22%), Positives = 138/317 (43%), Gaps = 46/317 (14%)

Query: 98  KHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSL--ATFASVFSSYVVADRVKDAI 155
           ++S  +++L++  LG+  +FD M + ++ +K+E   +     F +V + Y  A     A 
Sbjct: 112 RYSLLSYDLIISKLGRAKMFDEMEEILQQLKQETRFAPHEVIFCNVIAFYGRAHLPDRAF 171

Query: 156 TTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEG-- 213
             F+ +  + CK  V ++NSLL+A+ ++ +     Q    +     PD  T+ IL+    
Sbjct: 172 QVFERIPSFRCKRTVKSVNSLLAALLKNRQLEKMTQVFVDISNYGSPDACTFNILIHAAC 231

Query: 214 --------WE-----KERDVANAKKTFGEMVIEVGWDPDNVPAY----DSYLITLLKGCD 256
                   W      ++R V     TFG ++  +  +     A     D   + ++K   
Sbjct: 232 LCGDLDAVWGVFDEMQKRGVKPNVVTFGTLIYGLSLNSKLKEALRLKEDMVKVYMIKPNA 291

Query: 257 GIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMV------------ 304
            IY T      +++  C  G   F    +E +   N++    ++  ++            
Sbjct: 292 SIYTT------LIKGFCGVGELNFAFKLKEEMVTSNVKLVSAVYSTLISALFKHGRKEEV 345

Query: 305 -------GRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEF 357
                  G  G +PDT  YN +I+ +C  N+  +A +++DEMV  G  PD+ ++N +  +
Sbjct: 346 SDILREMGENGCKPDTVTYNAIINGHCKENDLESAHRVMDEMVEKGCKPDVFSFNTIIGW 405

Query: 358 LVKGRKLWEASGLFNEM 374
           L K  KL +A  L  +M
Sbjct: 406 LCKEGKLDKAMDLLEDM 422



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 59/258 (22%), Positives = 110/258 (42%), Gaps = 12/258 (4%)

Query: 110 LLGKNCL---FDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAIT-TFDVMEQY 164
           L+   CL    DA+W     M+K  V  ++ TF ++     +  ++K+A+    D+++ Y
Sbjct: 226 LIHAACLCGDLDAVWGVFDEMQKRGVKPNVVTFGTLIYGLSLNSKLKEALRLKEDMVKVY 285

Query: 165 GCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYAILLEGWEKERDVANA 223
             K +     +L+   C  G+   A++    +V   +K  +  Y+ L+    K       
Sbjct: 286 MIKPNASIYTTLIKGFCGVGELNFAFKLKEEMVTSNVKLVSAVYSTLISALFKHGRKEEV 345

Query: 224 KKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGM-TFFKL 282
                EM  E G  PD V  Y++ +    K  D +      +  M+E+GC P + +F  +
Sbjct: 346 SDILREMG-ENGCKPDTV-TYNAIINGHCKEND-LESAHRVMDEMVEKGCKPDVFSFNTI 402

Query: 283 AFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYN 342
               C  G+  +  + +    + R G  PD   Y ++    C   +   A  +LDEM++ 
Sbjct: 403 IGWLCKEGKLDKAMDLLED--MPRRGCPPDVLSYRIIFDGLCEMMQLKEATSILDEMIFK 460

Query: 343 GAFPDIQTYNILFEFLVK 360
           G  P  ++ N L + L +
Sbjct: 461 GYVPRNESINKLVDRLCQ 478



 Score = 38.5 bits (88), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 61/166 (36%), Gaps = 35/166 (21%)

Query: 311 PDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGL 370
           PD   +N++I   C   +  A   + DEM   G  P++ T+  L   L    KL EA  L
Sbjct: 218 PDACTFNILIHAACLCGDLDAVWGVFDEMQKRGVKPNVVTFGTLIYGLSLNSKLKEALRL 277

Query: 371 FNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCD 430
             +MVK                               YMI+ + S  +     L+ G C 
Sbjct: 278 KEDMVK------------------------------VYMIKPNASIYTT----LIKGFCG 303

Query: 431 MHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIK-ARKEAVYEEL 475
           +  L  A K  + M    +++     S L   L K  RKE V + L
Sbjct: 304 VGELNFAFKLKEEMVTSNVKLVSAVYSTLISALFKHGRKEEVSDIL 349


>gi|15240891|ref|NP_195731.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174092|sp|Q9LFC5.1|PP360_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g01110
 gi|6759434|emb|CAB69839.1| putative protein [Arabidopsis thaliana]
 gi|28973740|gb|AAO64186.1| unknown protein [Arabidopsis thaliana]
 gi|110736884|dbj|BAF00399.1| hypothetical protein [Arabidopsis thaliana]
 gi|332002917|gb|AED90300.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 729

 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 91/382 (23%), Positives = 155/382 (40%), Gaps = 10/382 (2%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASVFSSYVVADRVKDAITTFDVM 161
           A N ++  L +    +  W   + + +  V +++ T   + ++     +++   T    +
Sbjct: 202 ACNALIGSLVRIGWVELAWGVYQEISRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQV 261

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDV 220
           ++ G   D+   N+L+SA    G   +A++ +  + G+   P   TY  ++ G  K    
Sbjct: 262 QEKGVYPDIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKY 321

Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFF 280
             AK+ F EM +  G  PD+   Y S L+   K  D + ET      M  R   P +  F
Sbjct: 322 ERAKEVFAEM-LRSGLSPDST-TYRSLLMEACKKGD-VVETEKVFSDMRSRDVVPDLVCF 378

Query: 281 KLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMV 340
                      NL  A   + + V   G  PD  +Y ++I  YC       AM L +EM+
Sbjct: 379 SSMMSLFTRSGNLDKALMYFNS-VKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEML 437

Query: 341 YNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPY 400
             G   D+ TYN +   L K + L EA  LFNEM +     +       +  +    +  
Sbjct: 438 QQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQ 497

Query: 401 VAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLK 460
            A++ ++ M E        T N L+ G   +  +  A +    M  K I  TP + S L 
Sbjct: 498 NAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILV 557

Query: 461 QILIK----ARKEAVYEELLKK 478
             L      A    V++E++ K
Sbjct: 558 NALCSKGHLAEAFRVWDEMISK 579



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 79/357 (22%), Positives = 134/357 (37%), Gaps = 74/357 (20%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVME 162
           A NL  ++L + C  D                + T+ ++         + +A   F+ M 
Sbjct: 429 AMNLRNEMLQQGCAMD----------------VVTYNTILHGLCKRKMLGEADKLFNEMT 472

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDVA 221
           +     D + L  L+   C+ G   +A + F ++ + RI+ D  TY  LL+G+ K  D+ 
Sbjct: 473 ERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDID 532

Query: 222 NAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFK 281
            AK+ + +MV       + +P   SY I            VN+L       C+ G     
Sbjct: 533 TAKEIWADMV-----SKEILPTPISYSIL-----------VNAL-------CSKG----- 564

Query: 282 LAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVY 341
                     +L  A  +W  M+ +   +P   + N MI  YC S         L++M+ 
Sbjct: 565 ----------HLAEAFRVWDEMISK-NIKPTVMICNSMIKGYCRSGNASDGESFLEKMIS 613

Query: 342 NGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNE----------NVLNHENCRAAVR 391
            G  PD  +YN L    V+   + +A GL  +M + +          N + H  CR    
Sbjct: 614 EGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSILHGFCR---- 669

Query: 392 VYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448
                +    A    + MIE   +    T   ++ G      L EA +    M ++G
Sbjct: 670 ----QNQMKEAEVVLRKMIERGVNPDRSTYTCMINGFVSQDNLTEAFRIHDEMLQRG 722



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 53/247 (21%), Positives = 96/247 (38%), Gaps = 39/247 (15%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVM 161
            +N ++D  GK    D   +    M  + +L +  +++ + ++      + +A   +D M
Sbjct: 517 TYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEM 576

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERDV 220
                K  V   NS++   CR G   D   FL +++     PD  +Y  L+ G+ +E ++
Sbjct: 577 ISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGFVPDCISYNTLIYGFVREENM 636

Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFF 280
           + A     +M  E G    +V  Y+S L    +  + + E    L++M+ERG N      
Sbjct: 637 SKAFGLVKKMEEEQGGLVPDVFTYNSILHGFCRQ-NQMKEAEVVLRKMIERGVN------ 689

Query: 281 KLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMV 340
                                         PD   Y  MI+ +   +    A ++ DEM+
Sbjct: 690 ------------------------------PDRSTYTCMINGFVSQDNLTEAFRIHDEML 719

Query: 341 YNGAFPD 347
             G  PD
Sbjct: 720 QRGFSPD 726


>gi|15236546|ref|NP_194913.1| proton gradient regulation 3 [Arabidopsis thaliana]
 gi|75213543|sp|Q9SZ52.1|PP344_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g31850, chloroplastic; AltName: Full=Protein PROTON
           GRADIENT REGULATION 3; Flags: Precursor
 gi|4584524|emb|CAB40755.1| putative protein [Arabidopsis thaliana]
 gi|7270088|emb|CAB79903.1| putative protein [Arabidopsis thaliana]
 gi|332660567|gb|AEE85967.1| proton gradient regulation 3 [Arabidopsis thaliana]
          Length = 1112

 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 87/341 (25%), Positives = 151/341 (44%), Gaps = 45/341 (13%)

Query: 75  KFSYSHPGPAVKFFRWSAYQLNDKHSP--YAWNLVVDLLGKNCLFDAMWDAIKSMKKENV 132
           +FS +    +VK F WS  +  D H P    + ++VD L K   F   +D +  M+ + +
Sbjct: 337 RFSDNRDLDSVKQF-WSEME-KDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGI 394

Query: 133 L-SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKH----------------------- 168
           L +L T+ ++    +   R+ DA+  F  ME  G K                        
Sbjct: 395 LPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALE 454

Query: 169 ------------DVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWE 215
                       ++ A N+ L ++ + G+  +A Q F  + D  + PD+ TY ++++ + 
Sbjct: 455 TFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYS 514

Query: 216 KERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNP 275
           K  ++  A K   EM +E G +PD V   +S + TL K  D + E      RM E    P
Sbjct: 515 KVGEIDEAIKLLSEM-MENGCEPD-VIVVNSLINTLYKA-DRVDEAWKMFMRMKEMKLKP 571

Query: 276 GMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKL 335
            +  +            ++ A  ++  MV + G  P+T  +N +    C ++E   A+K+
Sbjct: 572 TVVTYNTLLAGLGKNGKIQEAIELFEGMVQK-GCPPNTITFNTLFDCLCKNDEVTLALKM 630

Query: 336 LDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK 376
           L +M+  G  PD+ TYN +   LVK  ++ EA   F++M K
Sbjct: 631 LFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQMKK 671



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 98/426 (23%), Positives = 170/426 (39%), Gaps = 25/426 (5%)

Query: 32  VPNLPPTIKTLCEIIANTPSPTVEDVLDKTLIRV--SQETVEQVLKFSYSHPGPAVKFFR 89
           V  +   IK L E++ N   P V  ++  +LI      + V++  K           F R
Sbjct: 516 VGEIDEAIKLLSEMMENGCEPDV--IVVNSLINTLYKADRVDEAWKM----------FMR 563

Query: 90  WSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVA 148
               +L  K +   +N ++  LGKN       +  + M ++    +  TF ++F      
Sbjct: 564 MKEMKL--KPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKN 621

Query: 149 DRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYA 208
           D V  A+     M   GC  DVF  N+++  + ++G+  +A  F   +   + PD  T  
Sbjct: 622 DEVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQMKKLVYPDFVTLC 681

Query: 209 ILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRM 268
            LL G  K   + +A K     +      P N+   D  LI  +    GI   V+  +R+
Sbjct: 682 TLLPGVVKASLIEDAYKIITNFLYNCADQPANLFWED--LIGSILAEAGIDNAVSFSERL 739

Query: 269 MERG-CNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSN 327
           +  G C  G +             N+ GA  ++      +G +P    YN++I     ++
Sbjct: 740 VANGICRDGDSILVPIIRYSCKHNNVSGARTLFEKFTKDLGVQPKLPTYNLLIGGLLEAD 799

Query: 328 ETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNE---NVLNHE 384
               A  +  ++   G  PD+ TYN L +   K  K+ E   L+ EM  +E   N + H 
Sbjct: 800 MIEIAQDVFLQVKSTGCIPDVATYNFLLDAYGKSGKIDELFELYKEMSTHECEANTITHN 859

Query: 385 NCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGM 444
              + +    + DD      ++  M +   S  + T   L+ GL     L EA +  +GM
Sbjct: 860 IVISGLVKAGNVDDALDL--YYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGM 917

Query: 445 AEKGIQ 450
            + G +
Sbjct: 918 LDYGCR 923



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 91/360 (25%), Positives = 154/360 (42%), Gaps = 30/360 (8%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMK----KENVLSLATFASVFSSYVVADRVKDAITTF 158
            + +++D L      D   +  + MK    K + ++  T    FS     +R  D++  F
Sbjct: 295 TYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSD----NRDLDSVKQF 350

Query: 159 -DVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV-DGRIKPDNDTYAILLEGWEK 216
              ME+ G   DV     L+ A+C+ G   +A+  L V+ D  I P+  TY  L+ G  +
Sbjct: 351 WSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLR 410

Query: 217 ERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPG 276
              + +A + FG M   +G  P     Y  ++    K  D +   + + ++M  +G  P 
Sbjct: 411 VHRLDDALELFGNME-SLGVKP-TAYTYIVFIDYYGKSGDSV-SALETFEKMKTKGIAPN 467

Query: 277 M-----TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGA 331
           +     + + LA      G++    +  +G  +  IG  PD+  YNMM+  Y    E   
Sbjct: 468 IVACNASLYSLA----KAGRDREAKQIFYG--LKDIGLVPDSVTYNMMMKCYSKVGEIDE 521

Query: 332 AMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLF---NEMVKNENVLNHENCRA 388
           A+KLL EM+ NG  PD+   N L   L K  ++ EA  +F    EM     V+ +    A
Sbjct: 522 AIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLA 581

Query: 389 AVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448
            +     +     AI+ ++ M++  C   + T N L   LC    +  A+K    M + G
Sbjct: 582 GLG---KNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMG 638



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 96/377 (25%), Positives = 157/377 (41%), Gaps = 16/377 (4%)

Query: 111 LGKNCLFDAMWDAIKSMK----KENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGC 166
           LGK    D++   +K M+    K NV +      V      A ++ +A      M+  GC
Sbjct: 233 LGKRRDIDSVMGLLKEMETLGLKPNVYTFTICIRVLGR---AGKINEAYEILKRMDDEGC 289

Query: 167 KHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDVANAKK 225
             DV     L+ A+C   K   A + F ++  GR KPD  TY  LL+ +   RD+ + K+
Sbjct: 290 GPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQ 349

Query: 226 TFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFE 285
            + EM  + G  PD V    + L+  L       E  ++L  M ++G  P +  +     
Sbjct: 350 FWSEMEKD-GHVPDVVTF--TILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLIC 406

Query: 286 ECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAF 345
             L    L  A  ++G M   +G +P  + Y + I  Y  S ++ +A++  ++M   G  
Sbjct: 407 GLLRVHRLDDALELFGNM-ESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIA 465

Query: 346 PDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKF 405
           P+I   N     L K  +  EA  +F  +     V +       ++ Y    +   AIK 
Sbjct: 466 PNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKL 525

Query: 406 WKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIK 465
              M+EN C       N L+  L     + EA K    M E  ++ T    + L   L K
Sbjct: 526 LSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGK 585

Query: 466 ARK--EAV--YEELLKK 478
             K  EA+  +E +++K
Sbjct: 586 NGKIQEAIELFEGMVQK 602



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 60/249 (24%), Positives = 107/249 (42%), Gaps = 8/249 (3%)

Query: 135  LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR 194
            L T+  +    + AD ++ A   F  ++  GC  DV   N LL A  + GK  + ++  +
Sbjct: 785  LPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAYGKSGKIDELFELYK 844

Query: 195  VVDG-RIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSY--LITL 251
             +     + +  T+ I++ G  K  +V +A   + +++     D D  P   +Y  LI  
Sbjct: 845  EMSTHECEANTITHNIVISGLVKAGNVDDALDLYYDLM----SDRDFSPTACTYGPLIDG 900

Query: 252  LKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRP 311
            L     +YE     + M++ GC P    + +             A  ++  MV + G RP
Sbjct: 901  LSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMV-KEGVRP 959

Query: 312  DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLF 371
            D   Y++++   C        +    E+  +G  PD+  YN++   L K  +L EA  LF
Sbjct: 960  DLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIINGLGKSHRLEEALVLF 1019

Query: 372  NEMVKNENV 380
            NEM  +  +
Sbjct: 1020 NEMKTSRGI 1028



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 102/475 (21%), Positives = 178/475 (37%), Gaps = 77/475 (16%)

Query: 66  SQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIK 125
           S E V + LK S+     +  +F+  A  LN  H+    N +++ L  +   + M     
Sbjct: 84  SSEEVTRGLK-SFPDTDSSFSYFKSVAGNLNLVHTTETCNYMLEALRVDGKLEEMAYVFD 142

Query: 126 SMKKENV-LSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDG 184
            M+K  +     T+ ++F S  V   +K A      M ++G   + ++ N L+  + +  
Sbjct: 143 LMQKRIIKRDTNTYLTIFKSLSVKGGLKQAPYALRKMREFGFVLNAYSYNGLIHLLLKSR 202

Query: 185 KTIDAWQFLR--VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVP 242
              +A +  R  +++G  +P   TY+ L+ G  K RD+ +      EM   +G  P NV 
Sbjct: 203 FCTEAMEVYRRMILEG-FRPSLQTYSSLMVGLGKRRDIDSVMGLLKEMET-LGLKP-NVY 259

Query: 243 AYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGA 302
            + +  I +L     I E    LKRM + GC P +  + +  +   T + L  A+ ++  
Sbjct: 260 TF-TICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEK 318

Query: 303 M-VGRI---------------------------------GFRPDTHMYNMMISLYCYSNE 328
           M  GR                                  G  PD   + +++   C +  
Sbjct: 319 MKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGN 378

Query: 329 TGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRA 388
            G A   LD M   G  P++ TYN L   L++  +L +A  LF  M              
Sbjct: 379 FGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIV 438

Query: 389 AVRVYMDSDDPYVAIKFWKYMIENHCS-----------DLSETG-----NLLVAGLCDMH 432
            +  Y  S D   A++ ++ M     +            L++ G       +  GL D+ 
Sbjct: 439 FIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIG 498

Query: 433 MLP-------------------EAVKYAKGMAEKGIQVTPFALSKLKQILIKARK 468
           ++P                   EA+K    M E G +     ++ L   L KA +
Sbjct: 499 LVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADR 553



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 70/276 (25%), Positives = 114/276 (41%), Gaps = 6/276 (2%)

Query: 103  AWNLVVDLLGKNCLFDAMWDAIKSMKK-ENVLSLATFASVFSSYVVADRVKDAITTF-DV 160
             +N ++D  GK+   D +++  K M   E   +  T   V S  V A  V DA+  + D+
Sbjct: 822  TYNFLLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDLYYDL 881

Query: 161  MEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERD 219
            M              L+  + + G+  +A Q F  ++D   +P+   Y IL+ G+ K  +
Sbjct: 882  MSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGE 941

Query: 220  VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTF 279
               A   F  MV E G  PD +  Y S L+  L     + E ++  K + E G NP +  
Sbjct: 942  ADAACALFKRMVKE-GVRPD-LKTY-SVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVC 998

Query: 280  FKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEM 339
            + L          L  A  ++  M    G  PD + YN +I     +     A K+ +E+
Sbjct: 999  YNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEI 1058

Query: 340  VYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
               G  P++ T+N L        K   A  ++  MV
Sbjct: 1059 QRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMV 1094



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 72/314 (22%), Positives = 134/314 (42%), Gaps = 12/314 (3%)

Query: 103  AWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVM 161
             +NL++  L +  + +   D    +K    +  +AT+  +  +Y  + ++ +    +  M
Sbjct: 787  TYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAYGKSGKIDELFELYKEM 846

Query: 162  EQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR--VVDGRIKPDNDTYAILLEGWEKERD 219
              + C+ +    N ++S + + G   DA       + D    P   TY  L++G  K   
Sbjct: 847  STHECEANTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGR 906

Query: 220  VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSL-KRMMERGCNPGMT 278
            +  AK+ F E +++ G  P N   Y+  +    K   G  +   +L KRM++ G  P + 
Sbjct: 907  LYEAKQLF-EGMLDYGCRP-NCAIYNILINGFGKA--GEADAACALFKRMVKEGVRPDLK 962

Query: 279  FFKLAFE-ECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLD 337
             + +  +  C+ G+   G  +     +   G  PD   YN++I+    S+    A+ L +
Sbjct: 963  TYSVLVDCLCMVGRVDEGLHYF--KELKESGLNPDVVCYNLIINGLGKSHRLEEALVLFN 1020

Query: 338  EM-VYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDS 396
            EM    G  PD+ TYN L   L     + EA  ++NE+ +     N     A +R Y  S
Sbjct: 1021 EMKTSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLS 1080

Query: 397  DDPYVAIKFWKYMI 410
              P  A   ++ M+
Sbjct: 1081 GKPEHAYAVYQTMV 1094


>gi|15221674|ref|NP_176496.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169918|sp|Q9CAN5.1|PPR98_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63080, mitochondrial; Flags: Precursor
 gi|12323262|gb|AAG51614.1|AC010795_18 unknown protein; 41955-40111 [Arabidopsis thaliana]
 gi|332195930|gb|AEE34051.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 614

 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 76/304 (25%), Positives = 132/304 (43%), Gaps = 5/304 (1%)

Query: 136 ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-R 194
            TF ++       ++  +A+   + M   GC+ D+    ++++ +C+ G+   A   L +
Sbjct: 171 VTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNK 230

Query: 195 VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG 254
           +  G+I+ D   Y+ +++   K R V +A   F EM  + G  PD V  Y S LI+ L  
Sbjct: 231 MEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNK-GIRPD-VFTYSS-LISCLCN 287

Query: 255 CDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTH 314
                +    L  M+ER  NP +  F    +       L  AE ++  M+ R    P+  
Sbjct: 288 YGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQR-SIDPNIV 346

Query: 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
            YN +I+ +C  +    A ++   MV     PD+ TYN L     K +K+ +   LF +M
Sbjct: 347 TYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDM 406

Query: 375 VKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHML 434
            +   V N       +  +  + D   A   +K M+ +       T N L+ GLC    L
Sbjct: 407 SRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKL 466

Query: 435 PEAV 438
            +A+
Sbjct: 467 EKAM 470



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 63/244 (25%), Positives = 110/244 (45%), Gaps = 9/244 (3%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           ++ T+ S+ + + + DR+ +A   F +M    C  DV   N+L++  C+  K +D  +  
Sbjct: 344 NIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELF 403

Query: 194 RVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
           R +  R +  +  TY  L+ G+ +  D  NA+  F +MV + G  P N+  Y++ L  L 
Sbjct: 404 RDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSD-GVHP-NIMTYNTLLDGLC 461

Query: 253 KGCDGIYETVNSLKRMMERG-CNPGMTFFKLAFEE-CLTGQNLRGAEFIWGAMVGRIGFR 310
           K  +G  E    +   +++    P +  + +  E  C  G+   G +      +   G +
Sbjct: 462 K--NGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLK--GVK 517

Query: 311 PDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGL 370
           PD   YN MIS +C       A  L  +M  +G  PD  TYN L    ++      ++ L
Sbjct: 518 PDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAEL 577

Query: 371 FNEM 374
             EM
Sbjct: 578 IKEM 581



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 76/300 (25%), Positives = 130/300 (43%), Gaps = 50/300 (16%)

Query: 135 LATFASVFSSY--------------------VVAD---------------RVKDAITTFD 159
           L T+ +V +                      + AD                V DA+  F 
Sbjct: 205 LVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFT 264

Query: 160 VMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYAILLEGWEKER 218
            M+  G + DVF  +SL+S +C  G+  DA + L  +++ +I P+  T+  L++ + KE 
Sbjct: 265 EMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEG 324

Query: 219 DVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPG-M 277
            +  A+K F EM I+   DP N+  Y+S LI      D + E       M+ + C P  +
Sbjct: 325 KLIEAEKLFDEM-IQRSIDP-NIVTYNS-LINGFCMHDRLDEAQQIFTLMVSKDCLPDVV 381

Query: 278 TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLD 337
           T+  L    C   + + G E      + R G   +T  Y  +I  +  +++   A  +  
Sbjct: 382 TYNTLINGFCKAKKVVDGMELFRD--MSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFK 439

Query: 338 EMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNE--------NVLNHENCRAA 389
           +MV +G  P+I TYN L + L K  KL +A  +F  + K++        N+++   C+A 
Sbjct: 440 QMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAG 499



 Score = 48.1 bits (113), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 67/165 (40%), Gaps = 1/165 (0%)

Query: 299 IWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFL 358
           I G M+ ++G+ P     N +++ +C+ N    A+ L+D+MV  G  PD  T+  L   L
Sbjct: 122 ILGKMM-KLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGL 180

Query: 359 VKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLS 418
            +  K  EA  L   MV      +     A +       +P +A+     M +       
Sbjct: 181 FQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADV 240

Query: 419 ETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQIL 463
              + ++  LC    + +A+     M  KGI+   F  S L   L
Sbjct: 241 VIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCL 285



 Score = 42.4 bits (98), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 30/130 (23%), Positives = 55/130 (42%)

Query: 300 WGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLV 359
           +G  +  +G   + + YN+MI+  C  ++   A+ +L +M+  G  P I T N L     
Sbjct: 87  FGEKMEILGVSHNLYTYNIMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFC 146

Query: 360 KGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSE 419
            G ++ EA  L ++MV+     +       V      +    A+   + M+   C     
Sbjct: 147 HGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLV 206

Query: 420 TGNLLVAGLC 429
           T   ++ GLC
Sbjct: 207 TYGAVINGLC 216


>gi|242067349|ref|XP_002448951.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
 gi|241934794|gb|EES07939.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
          Length = 799

 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 94/380 (24%), Positives = 160/380 (42%), Gaps = 25/380 (6%)

Query: 102 YAWNLVVDLLGKN--C-----LFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDA 154
           Y +  +++ L KN  C      FD+M    K +K +    ++T+  +   Y     + + 
Sbjct: 305 YTYGSLLNYLCKNGRCREARFFFDSMIR--KGIKPK----VSTYGILIHGYATKGALSEM 358

Query: 155 ITTFDVMEQYGCKHDVFALNSLLSAICRDG---KTIDAWQFLRVVDGRIKPDNDTYAILL 211
            +  D+M + G   D    N   SA  + G   K +D +  +R     + P+   Y  L+
Sbjct: 359 HSFLDLMVENGLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMR--QHGLSPNVVNYGALI 416

Query: 212 EGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMER 271
           +   K   V +A+  F +M+ E G  P N+  ++S L+  L   D        +  M+++
Sbjct: 417 DALCKLGRVDDAEVKFNQMINE-GVTP-NIVVFNS-LVYGLCTVDKWERAEELVYEMLDQ 473

Query: 272 GCNPGMTFFK-LAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETG 330
           G  P   FF  L    C  G+ + G   I   ++  +G RPD   Y  +IS YC +  T 
Sbjct: 474 GICPNAVFFNTLICNLCNVGRVMEGRRLI--DLMEHVGVRPDAFSYTPLISGYCLTGRTD 531

Query: 331 AAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAV 390
            A K+ D MV  G  P   TYN L        ++ +A  LF EM++             +
Sbjct: 532 EAEKVFDGMVSIGLSPTEVTYNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTIL 591

Query: 391 RVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQ 450
                +     A + +  MI +       T N+++ GLC  + + EA K  + +  KG+Q
Sbjct: 592 HGLFQTKRFSEAKELYLNMINSGTKCDIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQ 651

Query: 451 VTPFALSKLKQILIK-ARKE 469
           +     + +   L+K  RKE
Sbjct: 652 LNIITFTIMIGALLKGGRKE 671



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 72/320 (22%), Positives = 129/320 (40%), Gaps = 5/320 (1%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           +L T++ +   +     ++     F ++ + G + D  A+N LL  +C   +  +A   L
Sbjct: 89  NLCTYSILIGRFCRMGHLEHGFAAFGLILKTGWRMDHIAINQLLKGLCHGKRVGEAMDVL 148

Query: 194 --RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWD-PDNVPAYDSYLIT 250
             R+ +    PD  +Y ILL+G   E+    A +    M  + G   P NV +Y S +I 
Sbjct: 149 LQRMPELGCMPDTVSYTILLKGLCNEKRAEEALELLHMMADDHGRRCPPNVVSY-SIVIN 207

Query: 251 LLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFR 310
                  + +  N    M++RG  P +  +    +     Q    AE ++  M+   GF+
Sbjct: 208 GFFTEGQVDKPYNLFLEMIDRGIPPDVVTYTTVIDGLCKAQLFDRAEGVFQQMIDN-GFK 266

Query: 311 PDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGL 370
           P+ + YN +I  Y    +    +++L+EM   G  PD  TY  L  +L K  +  EA   
Sbjct: 267 PNNYTYNCLIHGYLSIGKWKEVVQMLEEMSARGLKPDCYTYGSLLNYLCKNGRCREARFF 326

Query: 371 FNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCD 430
           F+ M++             +  Y           F   M+EN  S      N+  +    
Sbjct: 327 FDSMIRKGIKPKVSTYGILIHGYATKGALSEMHSFLDLMVENGLSPDHHIFNIFFSAYAK 386

Query: 431 MHMLPEAVKYAKGMAEKGIQ 450
             M+ +A+     M + G+ 
Sbjct: 387 CGMIDKAMDIFNKMRQHGLS 406



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 94/456 (20%), Positives = 168/456 (36%), Gaps = 96/456 (21%)

Query: 73  VLKFSYSHPGPAVKFFRWSAYQLNDKHSP--YAWNLVVDLLGKNCLFDAMWDAIKSMKKE 130
           +L   Y+  G   +   +    + +  SP  + +N+      K  + D   D    M++ 
Sbjct: 344 ILIHGYATKGALSEMHSFLDLMVENGLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQH 403

Query: 131 NVL-SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDA 189
            +  ++  + ++  +     RV DA   F+ M   G   ++   NSL+  +C    T+D 
Sbjct: 404 GLSPNVVNYGALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFNSLVYGLC----TVDK 459

Query: 190 WQ-------------------FL-----------RVVDGR----------IKPDNDTYAI 209
           W+                   F            RV++GR          ++PD  +Y  
Sbjct: 460 WERAEELVYEMLDQGICPNAVFFNTLICNLCNVGRVMEGRRLIDLMEHVGVRPDAFSYTP 519

Query: 210 LLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG-CDG--IYETVNSLK 266
           L+ G+        A+K F  MV  +G  P  V  Y+    TLL G C    I +     +
Sbjct: 520 LISGYCLTGRTDEAEKVFDGMV-SIGLSPTEV-TYN----TLLHGYCSASRIDDAYCLFR 573

Query: 267 RMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYS 326
            M+ +G  PG+  +          +    A+ ++  M+   G + D + YN++++  C S
Sbjct: 574 EMLRKGVTPGVVTYNTILHGLFQTKRFSEAKELYLNMINS-GTKCDIYTYNIILNGLCKS 632

Query: 327 NETGAAMKLLDEMVY-----------------------------------NGAFPDIQTY 351
           N    A K+   +                                     NG  P++ TY
Sbjct: 633 NCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGRKEDAMDLFAAIPANGLVPNVVTY 692

Query: 352 NILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIE 411
            ++ E L++   L E   LF+ M KN    N +   A VR  +   D   A  +   + E
Sbjct: 693 RLVAENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRLLHRGDISRAGAYLSKLDE 752

Query: 412 NHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEK 447
            + S  + T +LL++    +    E   +AK + EK
Sbjct: 753 RNFSVEASTTSLLMS----IFTSDEYQHHAKSLPEK 784



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 78/333 (23%), Positives = 141/333 (42%), Gaps = 42/333 (12%)

Query: 146 VVADRVK-------DAITTFDVMEQYGCKHDVFALNSLLSAI----CRDGKTIDAWQFLR 194
           ++A+R +       DA+  FD +  +     V A N LL+A+    C     +    F R
Sbjct: 18  IIAERARSRSLGLDDALKLFDELLHHARPASVRAFNHLLTAVSRARCSSASELAVSHFNR 77

Query: 195 VV---DGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITL 251
           +V     ++ P+  TY+IL+  + +   + +    FG ++++ GW  D++      +  L
Sbjct: 78  MVRECSDKVAPNLCTYSILIGRFCRMGHLEHGFAAFG-LILKTGWRMDHIA-----INQL 131

Query: 252 LKG-CDG--IYETVNS-LKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRI 307
           LKG C G  + E ++  L+RM E GC P    + +  +     +    A  +   M    
Sbjct: 132 LKGLCHGKRVGEAMDVLLQRMPELGCMPDTVSYTILLKGLCNEKRAEEALELLHMMADDH 191

Query: 308 GFR--PDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLW 365
           G R  P+   Y+++I+ +    +      L  EM+  G  PD+ TY  + + L K +   
Sbjct: 192 GRRCPPNVVSYSIVINGFFTEGQVDKPYNLFLEMIDRGIPPDVVTYTTVIDGLCKAQLFD 251

Query: 366 EASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETG---- 421
            A G+F +M+ N    N+      +         Y++I  WK +++    ++S  G    
Sbjct: 252 RAEGVFQQMIDNGFKPNNYTYNCLIH-------GYLSIGKWKEVVQ-MLEEMSARGLKPD 303

Query: 422 ----NLLVAGLCDMHMLPEAVKYAKGMAEKGIQ 450
                 L+  LC      EA  +   M  KGI+
Sbjct: 304 CYTYGSLLNYLCKNGRCREARFFFDSMIRKGIK 336


>gi|222628656|gb|EEE60788.1| hypothetical protein OsJ_14372 [Oryza sativa Japonica Group]
          Length = 748

 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 62/243 (25%), Positives = 114/243 (46%), Gaps = 8/243 (3%)

Query: 138 FASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAW-QFLRVV 196
           F  + ++Y     +  A+  F+ M+  G   D     +++S++CR G+  DA  +F  +V
Sbjct: 335 FNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMV 394

Query: 197 DGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD 256
           D  + P    Y  L++G     ++  AK+   EM +     P  V  + S +  L K  +
Sbjct: 395 DIGVPPSEAVYRCLIQGCCNHGELVKAKELISEM-MNKDIPPPGVKYFSSIINNLFK--E 451

Query: 257 G-IYETVNSLKRMMERGCNPGMTFFKLAFEE-CLTGQNLRGAEFIWGAMVGRIGFRPDTH 314
           G + E  + +  M++ G  P +  F    E  CL G N+  A  +  AM   IG  P+ +
Sbjct: 452 GRVAEGKDIMDLMVQTGQRPNVVTFNSLMEGYCLVG-NMEEAFALLDAM-ASIGIEPNCY 509

Query: 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
           +Y  ++  YC +     A+ +  +M++ G  P    YNI+   L + R+   A  +F+EM
Sbjct: 510 IYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYNIILHGLFQARRTTAAKKMFHEM 569

Query: 375 VKN 377
           +++
Sbjct: 570 IES 572



 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 71/307 (23%), Positives = 127/307 (41%), Gaps = 26/307 (8%)

Query: 81  PGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFAS 140
           P P VK+F      L  +        ++DL+            +++ ++ NV+   TF S
Sbjct: 434 PPPGVKYFSSIINNLFKEGRVAEGKDIMDLM------------VQTGQRPNVV---TFNS 478

Query: 141 VFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGR 199
           +   Y +   +++A    D M   G + + +   +L+   C++G+  DA    R ++   
Sbjct: 479 LMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKG 538

Query: 200 IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC--DG 257
           +KP +  Y I+L G  + R    AKK F EM IE G       +  +Y + L   C  + 
Sbjct: 539 VKPTSVLYNIILHGLFQARRTTAAKKMFHEM-IESG----TTVSIQTYGVVLGGLCRNNC 593

Query: 258 IYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYN 317
             E    L+++        +  F +     L     + A+ ++ A +   G  P  H YN
Sbjct: 594 TDEANMLLEKLFAMNVKFDIITFNIVISAMLKVGRRQEAKELFAA-ISTYGLVPTVHTYN 652

Query: 318 MMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKN 377
           +MIS          A  L   +  +G  PD +  N +   L+K  ++ +AS   +  + +
Sbjct: 653 LMISNLIKEESYEEADNLFISVEKSGRAPDSRLLNHIVRMLLKKAEVAKASNYLS--IID 710

Query: 378 ENVLNHE 384
           EN L  E
Sbjct: 711 ENNLTLE 717



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 94/421 (22%), Positives = 162/421 (38%), Gaps = 63/421 (14%)

Query: 81  PGPAVKFF----RWSA-YQLNDKHSPYAWNLVVDLLGK----NCLFDAMWDAIKSMKKEN 131
           P  AV+ F    RW+  +   D  + Y +N+++D   +              +++    +
Sbjct: 97  PALAVELFKRMDRWACPHAAADAPTIYTYNILIDCYRRMHRPELALAVFGRLLRTGLGPD 156

Query: 132 VLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ 191
           V S  T    FS       V  A   F  M +     DV   NSL+  +C+  + + + +
Sbjct: 157 VCSYNTLIDGFSK---EGEVDKAYELFYKMIEQSVSPDVVTYNSLIDGLCKTKEMVKSER 213

Query: 192 FL-RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLIT 250
            L ++VD  I+P+N TY  L+ G+        + + F EM    G  P  V   +S++  
Sbjct: 214 VLEQMVDAGIRPNNKTYNSLIYGYSTAGMWKESVRVFKEMS-SSGLIPCVVNC-NSFIHA 271

Query: 251 LLKGCDGIYETVNSLKRMMERGCNPGMTFFKL-----AFEECLTGQNLRGAEFIWGAMVG 305
           L +  + I E  +    M+ +G  P +  +       A E C    N      +   MV 
Sbjct: 272 LCRH-NRIKEAKDIFDSMVLKGPKPNIISYSTLLHGYAAEGCFANMN-----SLVNLMVS 325

Query: 306 RIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLW 365
           + G  P+   +N++I+ Y        AM + ++M   G  PD  T+  +   L +  +L 
Sbjct: 326 K-GIVPNHRFFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLD 384

Query: 366 EASGLFNEMVK-------------NENVLNHENCRAA---VRVYMDSDDPYVAIKFWKYM 409
           +A   FN MV               +   NH     A   +   M+ D P   +K++  +
Sbjct: 385 DALHKFNHMVDIGVPPSEAVYRCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSI 444

Query: 410 IENHCSD------------LSETG--------NLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
           I N   +            + +TG        N L+ G C +  + EA      MA  GI
Sbjct: 445 INNLFKEGRVAEGKDIMDLMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGI 504

Query: 450 Q 450
           +
Sbjct: 505 E 505



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 86/385 (22%), Positives = 157/385 (40%), Gaps = 26/385 (6%)

Query: 109 DLLGKNCLFDAMWDAIKSMKKENVLSL----------ATFASVFSSYVVADRVKDAITTF 158
           D++  N L D +    + +K E VL             T+ S+   Y  A   K+++  F
Sbjct: 191 DVVTYNSLIDGLCKTKEMVKSERVLEQMVDAGIRPNNKTYNSLIYGYSTAGMWKESVRVF 250

Query: 159 DVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKE 217
             M   G    V   NS + A+CR  +  +A   F  +V    KP+  +Y+ LL G+  E
Sbjct: 251 KEMSSSGLIPCVVNCNSFIHALCRHNRIKEAKDIFDSMVLKGPKPNIISYSTLLHGYAAE 310

Query: 218 RDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNP-G 276
              AN       MV + G  P++   + + LI     C  + + +   + M  +G  P  
Sbjct: 311 GCFANMNSLVNLMVSK-GIVPNH--RFFNILINAYARCGMMDKAMLIFEDMQNKGMIPDT 367

Query: 277 MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLL 336
           +TF  +    C  G+ L  A   +  MV  IG  P   +Y  +I   C   E   A +L+
Sbjct: 368 VTFATVISSLCRIGR-LDDALHKFNHMVD-IGVPPSEAVYRCLIQGCCNHGELVKAKELI 425

Query: 337 DEMVYNG-AFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKN---ENVLNHENCRAAVRV 392
            EM+      P ++ ++ +   L K  ++ E   + + MV+     NV+   +      +
Sbjct: 426 SEMMNKDIPPPGVKYFSSIINNLFKEGRVAEGKDIMDLMVQTGQRPNVVTFNSLMEGYCL 485

Query: 393 YMDSDDPYVAIKFWKYM-IENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQV 451
             + ++ +  +     + IE +C         LV G C    + +A+   + M  KG++ 
Sbjct: 486 VGNMEEAFALLDAMASIGIEPNCYIYGT----LVDGYCKNGRIDDALTVFRDMLHKGVKP 541

Query: 452 TPFALSKLKQILIKARKEAVYEELL 476
           T    + +   L +AR+    +++ 
Sbjct: 542 TSVLYNIILHGLFQARRTTAAKKMF 566


>gi|255576901|ref|XP_002529336.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531207|gb|EEF33053.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 610

 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 81/354 (22%), Positives = 150/354 (42%), Gaps = 55/354 (15%)

Query: 61  TLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAM 120
           +L+R+ ++    +  F + +  P  K FR+S            ++L++  LG+  +F  M
Sbjct: 16  SLLRLQEDPKLALHLFQHPNSNPNPKPFRYSLL---------CYDLMITKLGRAKMFHEM 66

Query: 121 WDAIKSMKKEN--VLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLS 178
              +   K +   V     F ++ + Y  A   ++A+  FD M  Y C+  + + N+LL+
Sbjct: 67  EQILLQFKTQTRLVAKEPLFCNIITFYGRAGLPQNALKMFDEMPLYRCQRTIKSYNTLLN 126

Query: 179 A--ICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGW---------------EKERDVA 221
              IC++   +    F+ +    +KPD  T+ I++ G                 K RD+ 
Sbjct: 127 VLMICKEFDVMRE-HFVNI-KRHVKPDGCTFNIMIRGLCSDGRVDDALKVLDEMKNRDLV 184

Query: 222 NAKKTFGEMVIEVGWDPDNVPAYD--SYLITLLKGCDGIYETVNSLKRMMERGCNPGMTF 279
             + TFG ++  +  +     A+    Y++ +   C   Y     +K +    C  G   
Sbjct: 185 PNQVTFGTLIYGLCLNLKLKEAFKLKDYMVNVHGLCPNEYVYATLIKGL----CAVGELS 240

Query: 280 FKLAFEECLTGQNLRGAEFIWGAMVGRI-------------------GFRPDTHMYNMMI 320
           F L  +E +    ++    I+  ++  +                   G + DT  YN+MI
Sbjct: 241 FALRLKEEMERDGVKVDSAIYSTLISGLFKVGRKDEVFGVLMEMELKGCKADTVTYNVMI 300

Query: 321 SLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
           + +C   +   A K+LDEM+ N   PD+ +YN++   L K  K  EAS LF +M
Sbjct: 301 NGFCKDKDFETAYKILDEMMENRCKPDVISYNVILGELCKDGKWSEASDLFEDM 354


>gi|357473123|ref|XP_003606846.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355507901|gb|AES89043.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 624

 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 86/335 (25%), Positives = 140/335 (41%), Gaps = 12/335 (3%)

Query: 121 WDAIKSMKKENV-LSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSA 179
           W   + M K N+  S+ TF  + +      + K A      ME YG K +V   N++++ 
Sbjct: 202 WFVYEEMVKMNIKSSIVTFNIMINILCREGKWKKAKDFIGHMEVYGVKPNVVTYNTVING 261

Query: 180 ICRDGKTIDAWQFLRVV-DGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDP 238
            C  GK   A +  + + D  +KPD  TY   +    KER +  A     ++ +E G  P
Sbjct: 262 YCLRGKFEAASKIFKTMKDKNLKPDCYTYNSFISRLCKERRIEEASGVLCKL-LESGLVP 320

Query: 239 DNVPAYDSYLITLLKGC--DGIYETVNSLK-RMMERGCNPGMTFFKLAFEECLTGQNLRG 295
           + V  Y++    L+ GC   G  +   + +  MM RG    +  + L        + +  
Sbjct: 321 NAV-TYNA----LIDGCCNKGDLDKAFAYRDEMMNRGIVASVFTYNLLIHALFLEKRIEE 375

Query: 296 AEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILF 355
           AE +   M  + G  PD   YN+ I+ YC       A+ L DEMV     P ++TY  L 
Sbjct: 376 AEDMIKEMREK-GVEPDVVTYNIQINGYCRCGNAKKALSLFDEMVEKNIRPTVETYTSLI 434

Query: 356 EFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCS 415
           +   K  ++ EA   F + +K   + +     A +  +  + +   A +  K M      
Sbjct: 435 DVFGKRNRMSEAEEKFKKSIKEGMLPDIIMFNALIDGHCVNGNIDRAFQLLKEMDNAKVV 494

Query: 416 DLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQ 450
               T N L+ G C    + EA K    M E+GI+
Sbjct: 495 PDEVTFNTLMQGYCRERKVEEAKKLLDEMKERGIK 529



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 89/403 (22%), Positives = 166/403 (41%), Gaps = 49/403 (12%)

Query: 90  WSAYQ----LNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSS 144
           W  Y+    +N K S   +N+++++L +   +    D I  M+   V  ++ T+ +V + 
Sbjct: 202 WFVYEEMVKMNIKSSIVTFNIMINILCREGKWKKAKDFIGHMEVYGVKPNVVTYNTVING 261

Query: 145 YVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPD 203
           Y +  + + A   F  M+    K D +  NS +S +C++ +  +A   L ++++  + P+
Sbjct: 262 YCLRGKFEAASKIFKTMKDKNLKPDCYTYNSFISRLCKERRIEEASGVLCKLLESGLVPN 321

Query: 204 NDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSY--LITLLKGCDGIYET 261
             TY  L++G   + D+  A     EM+     +   V +  +Y  LI  L     I E 
Sbjct: 322 AVTYNALIDGCCNKGDLDKAFAYRDEMM-----NRGIVASVFTYNLLIHALFLEKRIEEA 376

Query: 262 VNSLKRMMERGCNPGMTFFKLA----------------FEECLTGQNLRGAEFIWGAMVG 305
            + +K M E+G  P +  + +                 F+E +  +N+R     + +++ 
Sbjct: 377 EDMIKEMREKGVEPDVVTYNIQINGYCRCGNAKKALSLFDE-MVEKNIRPTVETYTSLID 435

Query: 306 RIGFR-------------------PDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFP 346
             G R                   PD  M+N +I  +C +     A +LL EM      P
Sbjct: 436 VFGKRNRMSEAEEKFKKSIKEGMLPDIIMFNALIDGHCVNGNIDRAFQLLKEMDNAKVVP 495

Query: 347 DIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFW 406
           D  T+N L +   + RK+ EA  L +EM +     +H +    +  Y    D   A++ +
Sbjct: 496 DEVTFNTLMQGYCRERKVEEAKKLLDEMKERGIKPDHISYNTLISGYSKRGDMKDALEVF 555

Query: 407 KYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
             M+         T N L+ G   +     A +  + M  KGI
Sbjct: 556 DEMLSLGFDPTLLTYNALIQGYSKIGEADHAEELLREMQSKGI 598



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 68/252 (26%), Positives = 109/252 (43%), Gaps = 46/252 (18%)

Query: 116 LFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNS 175
           LFD M +  K+++     ++ T+ S+   +   +R+ +A   F    + G   D+   N+
Sbjct: 414 LFDEMVE--KNIRP----TVETYTSLIDVFGKRNRMSEAEEKFKKSIKEGMLPDIIMFNA 467

Query: 176 LLSAICRDGKTIDAWQFLRVVD-GRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEV 234
           L+   C +G    A+Q L+ +D  ++ PD  T+  L++G+ +ER V  AKK   EM  E 
Sbjct: 468 LIDGHCVNGNIDRAFQLLKEMDNAKVVPDEVTFNTLMQGYCRERKVEEAKKLLDEMK-ER 526

Query: 235 GWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLR 294
           G  PD++ +Y+    TL+ G    Y     +K  +E             F+E L+     
Sbjct: 527 GIKPDHI-SYN----TLISG----YSKRGDMKDALE------------VFDEMLS----- 560

Query: 295 GAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNIL 354
                       +GF P    YN +I  Y    E   A +LL EM   G  PD  TY  +
Sbjct: 561 ------------LGFDPTLLTYNALIQGYSKIGEADHAEELLREMQSKGITPDDSTYLYV 608

Query: 355 FEFLVKGRKLWE 366
            E +     L E
Sbjct: 609 IEAMKTNDDLVE 620


>gi|356498873|ref|XP_003518272.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 566

 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 87/350 (24%), Positives = 155/350 (44%), Gaps = 21/350 (6%)

Query: 136 ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRV 195
           AT+ +V  S     ++K A+   D   Q  C  DV     L+ A C++     A +    
Sbjct: 172 ATYDAVLCSLCDRGKLKQAMQVLDRQLQSKCYPDVVTCTVLIDATCKESGVGQAMKLFNE 231

Query: 196 VDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG 254
           + G+  KPD  TY +L++G+ KE  +  A   F + +   G   D V +++  L +L  G
Sbjct: 232 MRGKGCKPDVVTYNVLIKGFCKEGRLDEAI-IFLKKLPSYGCQSD-VISHNMILRSLCSG 289

Query: 255 CDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTH 314
              + + +  L  M+ +GC P +  F +     L  + L G       M+ + G  P++ 
Sbjct: 290 GRWM-DAMKLLATMLRKGCFPSVVTFNILINF-LCQKGLLGKALNVLEMMPKHGHTPNSR 347

Query: 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
            +N +I  +C       A++ L+ MV  G +PDI TYNIL   L K  K+ +A  + ++ 
Sbjct: 348 SFNPLIQGFCNRKGIDRAIEHLEIMVSRGCYPDIVTYNILLTALCKDGKVDDAVVILSQ- 406

Query: 375 VKNENVLNHENCRAAVRVYMDSDDPYVAI---KFWKYMIENHC-----SDLSETGNLLVA 426
                 L+ + C  ++  Y    D  + +   +    ++E  C      DL  T   +V 
Sbjct: 407 ------LSSKGCSPSLISYNTVIDGLLKVGKAELAVELLEEMCYKGLKPDLI-TCTSVVG 459

Query: 427 GLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELL 476
           GL     + EA+K+   +   GI+   F  + +   L KA++ ++  + L
Sbjct: 460 GLSREGKVHEAIKFFHYLKGFGIKPNAFIYNSIMMGLCKAQQTSLAIDFL 509



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 78/330 (23%), Positives = 142/330 (43%), Gaps = 8/330 (2%)

Query: 150 RVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVD-GRIKPDNDTYA 208
           R K+A     ++E+ G   D  + N L++A C+ G+  +A   LRV+D   + P+  TY 
Sbjct: 119 RTKNATRIMGILEESGAVIDANSYNVLINAYCKSGEIEEA---LRVLDHTSVAPNAATYD 175

Query: 209 ILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRM 268
            +L        +  A +   +  ++    PD V    + LI       G+ + +     M
Sbjct: 176 AVLCSLCDRGKLKQAMQVL-DRQLQSKCYPDVVTC--TVLIDATCKESGVGQAMKLFNEM 232

Query: 269 MERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNE 328
             +GC P +  + +  +       L  A  I+   +   G + D   +NM++   C    
Sbjct: 233 RGKGCKPDVVTYNVLIKGFCKEGRLDEA-IIFLKKLPSYGCQSDVISHNMILRSLCSGGR 291

Query: 329 TGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRA 388
              AMKLL  M+  G FP + T+NIL  FL +   L +A  +   M K+ +  N  +   
Sbjct: 292 WMDAMKLLATMLRKGCFPSVVTFNILINFLCQKGLLGKALNVLEMMPKHGHTPNSRSFNP 351

Query: 389 AVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448
            ++ + +      AI+  + M+   C     T N+L+  LC    + +AV     ++ KG
Sbjct: 352 LIQGFCNRKGIDRAIEHLEIMVSRGCYPDIVTYNILLTALCKDGKVDDAVVILSQLSSKG 411

Query: 449 IQVTPFALSKLKQILIKARKEAVYEELLKK 478
              +  + + +   L+K  K  +  ELL++
Sbjct: 412 CSPSLISYNTVIDGLLKVGKAELAVELLEE 441



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 67/277 (24%), Positives = 113/277 (40%), Gaps = 41/277 (14%)

Query: 100 SPYAWNLVVDLLGKNCLFDAMWDAIKSMKKE-NVLSLATFASVFSSYVVADRVKDAITTF 158
           S   +N++++ L +  L     + ++ M K  +  +  +F  +   +     +  AI   
Sbjct: 310 SVVTFNILINFLCQKGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNRKGIDRAIEHL 369

Query: 159 DVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKE 217
           ++M   GC  D+   N LL+A+C+DGK  DA   L  +  +   P   +Y  +++G  K 
Sbjct: 370 EIMVSRGCYPDIVTYNILLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLLKV 429

Query: 218 RDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGM 277
                A +   EM  + G  PD        LIT    C  +   V  L R  E   +  +
Sbjct: 430 GKAELAVELLEEMCYK-GLKPD--------LIT----CTSV---VGGLSR--EGKVHEAI 471

Query: 278 TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLD 337
            FF            L+G            G +P+  +YN ++   C + +T  A+  L 
Sbjct: 472 KFF----------HYLKG-----------FGIKPNAFIYNSIMMGLCKAQQTSLAIDFLV 510

Query: 338 EMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
           +MV NG  P   +Y  L + +       EAS L NE+
Sbjct: 511 DMVANGCKPTEASYTTLIKGITYEGLAEEASKLSNEL 547


>gi|359488007|ref|XP_002263892.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Vitis vinifera]
          Length = 539

 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 84/360 (23%), Positives = 151/360 (41%), Gaps = 33/360 (9%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           ++ T+ ++ +      ++ +A+  F  M   G   D+F  NSL+ A+C     +  W+ +
Sbjct: 160 NVVTYGTLMNGLCKDRQLTEALNLFSEMIAKGISPDIFTYNSLIHALCN----LCEWKHV 215

Query: 194 -----RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYL 248
                 +V  +I P+  +  I+++   KE  V  A     +M+I+ G +PD V    +Y 
Sbjct: 216 TTLLNEMVKSKIMPNVVSLNIVVDALCKEGKVTEAHDVV-DMMIQGGVEPDVV----TYA 270

Query: 249 ITLLKGC--DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGR 306
             +   C    + E V     M+  GC   +  +          Q +  A +++  M  R
Sbjct: 271 ALMDGHCLRSEMDEAVKVFDMMVRNGCVCNVVSYNTLINGYCKIQRIDKAMYLFEEMC-R 329

Query: 307 IGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWE 366
               P+T  Y+ +I   C+      A+ L +EMV  G  P++ TY+IL ++L K  +L E
Sbjct: 330 QELIPNTMTYSTLIHGLCHVGRLQDAIALFNEMVACGQIPNLVTYSILLDYLCKNHRLAE 389

Query: 367 ASGLFNEM--------VKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLS 418
           A  L   +        V+  N+     CRA         D   A   +  +         
Sbjct: 390 AMALLKAIEGSNLDPDVQVYNIAIDGMCRAG--------DLEAARDLFSNLAPRGLQPDV 441

Query: 419 ETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKK 478
            T N+++ GLC   +L EA K  + M E G        + + Q L++  K +   +LL++
Sbjct: 442 WTHNIMIRGLCKRGLLDEASKLFREMDENGCLRNGCTYNTITQGLLQNNKTSRAIQLLEE 501



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 83/330 (25%), Positives = 135/330 (40%), Gaps = 41/330 (12%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASVFSSYVVADRVKDAITTFDVM 161
           + N+VVD L K        D +  M +  V   + T+A++   + +   + +A+  FD+M
Sbjct: 233 SLNIVVDALCKEGKVTEAHDVVDMMIQGGVEPDVVTYAALMDGHCLRSEMDEAVKVFDMM 292

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDA-WQFLRVVDGRIKPDNDTYAILLEGWEKERDV 220
            + GC  +V + N+L++  C+  +   A + F  +    + P+  TY+ L+ G      +
Sbjct: 293 VRNGCVCNVVSYNTLINGYCKIQRIDKAMYLFEEMCRQELIPNTMTYSTLIHGLCHVGRL 352

Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFF 280
            +A   F EMV   G  P N+  Y   L  L K             R+ E          
Sbjct: 353 QDAIALFNEMV-ACGQIP-NLVTYSILLDYLCKN-----------HRLAE---------- 389

Query: 281 KLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMV 340
            +A  + + G NL                 PD  +YN+ I   C + +  AA  L   + 
Sbjct: 390 AMALLKAIEGSNLD----------------PDVQVYNIAIDGMCRAGDLEAARDLFSNLA 433

Query: 341 YNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPY 400
             G  PD+ T+NI+   L K   L EAS LF EM +N  + N        +  + ++   
Sbjct: 434 PRGLQPDVWTHNIMIRGLCKRGLLDEASKLFREMDENGCLRNGCTYNTITQGLLQNNKTS 493

Query: 401 VAIKFWKYMIENHCSDLSETGNLLVAGLCD 430
            AI+  + M+    S    T  LLV  L D
Sbjct: 494 RAIQLLEEMLARGFSADVSTTALLVKMLSD 523



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 80/345 (23%), Positives = 140/345 (40%), Gaps = 13/345 (3%)

Query: 138 FASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVV 196
           FA + +S          ++    M+ +G   DV+ L  ++++ C   +   A   L +++
Sbjct: 59  FAKLLTSIAKMKHYSTVLSLSKKMDSFGIPPDVYTLTIVINSFCHLNRVDFALSVLAKIL 118

Query: 197 DGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD 256
               +PD  T+  L+ G      +  A   F +MV E G+ P NV  Y + +  L K   
Sbjct: 119 KLGHQPDTATFTTLVRGLCVVGKIGEALDVFDKMVGE-GFQP-NVVTYGTLMNGLCKD-R 175

Query: 257 GIYETVNSLKRMMERGCNPGM-TFFKLAFEECLTGQNL---RGAEFIWGAMVGRIGFRPD 312
            + E +N    M+ +G +P + T+  L    C    NL   +    +   MV +    P+
Sbjct: 176 QLTEALNLFSEMIAKGISPDIFTYNSLIHALC----NLCEWKHVTTLLNEMV-KSKIMPN 230

Query: 313 THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFN 372
               N+++   C   +   A  ++D M+  G  PD+ TY  L +      ++ EA  +F+
Sbjct: 231 VVSLNIVVDALCKEGKVTEAHDVVDMMIQGGVEPDVVTYAALMDGHCLRSEMDEAVKVFD 290

Query: 373 EMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMH 432
            MV+N  V N  +    +  Y        A+  ++ M        + T + L+ GLC + 
Sbjct: 291 MMVRNGCVCNVVSYNTLINGYCKIQRIDKAMYLFEEMCRQELIPNTMTYSTLIHGLCHVG 350

Query: 433 MLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLK 477
            L +A+     M   G        S L   L K  + A    LLK
Sbjct: 351 RLQDAIALFNEMVACGQIPNLVTYSILLDYLCKNHRLAEAMALLK 395


>gi|15237575|ref|NP_198933.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75309191|sp|Q9FLL3.1|PP412_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g41170, mitochondrial; Flags: Precursor
 gi|9759163|dbj|BAB09719.1| salt-inducible protein-like [Arabidopsis thaliana]
 gi|66792708|gb|AAY56456.1| At5g41170 [Arabidopsis thaliana]
 gi|332007267|gb|AED94650.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 527

 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 81/314 (25%), Positives = 134/314 (42%), Gaps = 49/314 (15%)

Query: 109 DLLGKNCLFDAMWDAIKSMKKENVLSL----ATFASVFSSYVVADRVKDAITTFDVMEQY 164
            L+   CL + M +A+  + +   + +      + ++  S      V  A++ FD ME Y
Sbjct: 147 SLINGFCLGNRMEEAMSMVNQMVEMGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENY 206

Query: 165 GCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVANA 223
           G + DV    SL++ +C  G+  DA   LR +  R IKPD  T+  L++ + KE    +A
Sbjct: 207 GIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDA 266

Query: 224 KKTFGEMVIEVGWDPDNVPAYDSYLITL-LKGCDGIYETVNSLKRMMERGCNP------- 275
           ++ + EM I +   P N+  Y S +    ++GC  + E       M  +GC P       
Sbjct: 267 EELYNEM-IRMSIAP-NIFTYTSLINGFCMEGC--VDEARQMFYLMETKGCFPDVVAYTS 322

Query: 276 -------------GMTFFKLAFEECLTGQNLRGAEFIWG---------------AMVGRI 307
                         M  F    ++ LTG  +     I G                MV R 
Sbjct: 323 LINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKPNVAQEVFSHMVSR- 381

Query: 308 GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMV---YNGAFPDIQTYNILFEFLVKGRKL 364
           G  P+   YN+++   CY+ +   A+ + ++M     +G  P+I TYN+L   L    KL
Sbjct: 382 GVPPNIRTYNVLLHCLCYNGKVKKALMIFEDMQKREMDGVAPNIWTYNVLLHGLCYNGKL 441

Query: 365 WEASGLFNEMVKNE 378
            +A  +F +M K E
Sbjct: 442 EKALMVFEDMRKRE 455



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 77/362 (21%), Positives = 135/362 (37%), Gaps = 41/362 (11%)

Query: 117 FDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNS 175
           F+   D    M +   L S+  F  + +      +    I   D ++  G  HD++  N 
Sbjct: 53  FNEALDLFTHMVESRPLPSIIDFTKLLNVIAKMKKFDVVINLCDHLQIMGVSHDLYTCNL 112

Query: 176 LLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEV 234
           L++  C+  +   A  FL +++    +PD  T+  L+ G+     +  A     +MV E+
Sbjct: 113 LMNCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMV-EM 171

Query: 235 GWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLR 294
           G  PD V                +Y T+      ++  C  G   + L+  + +      
Sbjct: 172 GIKPDVV----------------MYTTI------IDSLCKNGHVNYALSLFDQMENY--- 206

Query: 295 GAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNIL 354
                        G RPD  MY  +++  C S     A  LL  M      PD+ T+N L
Sbjct: 207 -------------GIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIKPDVITFNAL 253

Query: 355 FEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHC 414
            +  VK  K  +A  L+NEM++     N     + +  +        A + +  M    C
Sbjct: 254 IDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQMFYLMETKGC 313

Query: 415 SDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEE 474
                    L+ G C    + +A+K    M++KG+       + L Q   +  K  V +E
Sbjct: 314 FPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKPNVAQE 373

Query: 475 LL 476
           + 
Sbjct: 374 VF 375



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 72/283 (25%), Positives = 120/283 (42%), Gaps = 24/283 (8%)

Query: 109 DLLGKNCLFDAMWDAIKSMKKENV------LSLA----TFASVFSSYVVADRVKDAITTF 158
           D++  N L DA     K +  E +      +S+A    T+ S+ + + +   V +A   F
Sbjct: 246 DVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQMF 305

Query: 159 DVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKE 217
            +ME  GC  DV A  SL++  C+  K  DA + F  +    +  +  TY  L++G+ + 
Sbjct: 306 YLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQV 365

Query: 218 RDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITL-----LKGCDGIYETVNSLKRMMERG 272
                A++ F  MV      P N+  Y+  L  L     +K    I+E +   KR M+ G
Sbjct: 366 GKPNVAQEVFSHMVSR--GVPPNIRTYNVLLHCLCYNGKVKKALMIFEDMQ--KREMD-G 420

Query: 273 CNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGA 331
             P + T+  L    C  G+ L  A  ++  M  R         Y ++I   C + +   
Sbjct: 421 VAPNIWTYNVLLHGLCYNGK-LEKALMVFEDMRKR-EMDIGIITYTIIIQGMCKAGKVKN 478

Query: 332 AMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
           A+ L   +   G  P++ TY  +   L +     EA  LF +M
Sbjct: 479 AVNLFCSLPSKGVKPNVVTYTTMISGLFREGLKHEAHVLFRKM 521


>gi|334182313|ref|NP_172058.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|334182315|ref|NP_001154307.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|122236365|sp|Q0WVK7.1|PPR12_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g05670, mitochondrial; Flags: Precursor
 gi|110741796|dbj|BAE98841.1| hypothetical protein [Arabidopsis thaliana]
 gi|332189752|gb|AEE27873.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|332189753|gb|AEE27874.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
          Length = 741

 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 89/375 (23%), Positives = 155/375 (41%), Gaps = 10/375 (2%)

Query: 98  KHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAIT 156
           K + Y +  ++ LL + C      +A   M ++ +L     + ++   +     ++ A  
Sbjct: 313 KPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASK 372

Query: 157 TFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWE 215
            F  M       DV    +++S  C+ G  ++A + F  +    ++PD+ T+  L+ G+ 
Sbjct: 373 FFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYC 432

Query: 216 KERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSL-KRMMERGCN 274
           K   + +A +    M I+ G  P NV  Y + +  L K  +G  ++ N L   M + G  
Sbjct: 433 KAGHMKDAFRVHNHM-IQAGCSP-NVVTYTTLIDGLCK--EGDLDSANELLHEMWKIGLQ 488

Query: 275 PGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAM 333
           P + T+  +    C +G N+  A  + G      G   DT  Y  ++  YC S E   A 
Sbjct: 489 PNIFTYNSIVNGLCKSG-NIEEAVKLVGEFEA-AGLNADTVTYTTLMDAYCKSGEMDKAQ 546

Query: 334 KLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVY 393
           ++L EM+  G  P I T+N+L         L +   L N M+      N     + V+ Y
Sbjct: 547 EILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQY 606

Query: 394 MDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTP 453
              ++   A   +K M         +T   LV G C    + EA    + M  KG  V+ 
Sbjct: 607 CIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSV 666

Query: 454 FALSKLKQILIKARK 468
              S L +  +K +K
Sbjct: 667 STYSVLIKGFLKRKK 681



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 67/273 (24%), Positives = 108/273 (39%), Gaps = 36/273 (13%)

Query: 136 ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRV 195
            TF  + + Y  A  +KDA    + M Q GC  +V    +L+  +C++G    A + L  
Sbjct: 422 VTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHE 481

Query: 196 V-DGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVP---AYDSYLIT- 250
           +    ++P+  TY  ++ G  K  ++  A K  GE     G + D V      D+Y  + 
Sbjct: 482 MWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFE-AAGLNADTVTYTTLMDAYCKSG 540

Query: 251 ------------LLKGCDGIYETVNSLKR-----------------MMERGCNPGMTFFK 281
                       L KG      T N L                   M+ +G  P  T F 
Sbjct: 541 EMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFN 600

Query: 282 LAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVY 341
              ++     NL+ A  I+  M  R G  PD   Y  ++  +C +     A  L  EM  
Sbjct: 601 SLVKQYCIRNNLKAATAIYKDMCSR-GVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKG 659

Query: 342 NGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
            G    + TY++L +  +K +K  EA  +F++M
Sbjct: 660 KGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQM 692



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 77/347 (22%), Positives = 140/347 (40%), Gaps = 42/347 (12%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           ++A++  V        R+K+A     +ME  G   DV + +++++  CR G+    W+ +
Sbjct: 245 NVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLI 304

Query: 194 RVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
            V+  + +KP++  Y  ++    +   +A A++ F EM I  G  PD V  Y + +    
Sbjct: 305 EVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEM-IRQGILPDTV-VYTTLIDGFC 362

Query: 253 KGCDGIYETVNSLKRMMERGCNPG-MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRP 311
           K  D I         M  R   P  +T+  +    C  G  +   + ++  M  + G  P
Sbjct: 363 KRGD-IRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGK-LFHEMFCK-GLEP 419

Query: 312 DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLF 371
           D+  +  +I+ YC +     A ++ + M+  G  P++ TY  L + L K   L  A+ L 
Sbjct: 420 DSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELL 479

Query: 372 NEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDM 431
           +EM                               WK  ++ +      T N +V GLC  
Sbjct: 480 HEM-------------------------------WKIGLQPNIF----TYNSIVNGLCKS 504

Query: 432 HMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKK 478
             + EAVK        G+       + L     K+ +    +E+LK+
Sbjct: 505 GNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKE 551



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 71/323 (21%), Positives = 136/323 (42%), Gaps = 22/323 (6%)

Query: 77  SYSHPGPAVKFFRWSAYQLNDKHSP--YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL- 133
            Y   G     FR   + +    SP    +  ++D L K    D+  + +  M K  +  
Sbjct: 430 GYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQP 489

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           ++ T+ S+ +    +  +++A+      E  G   D     +L+ A C+ G+   A + L
Sbjct: 490 NIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEIL 549

Query: 194 RVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITL- 251
           + + G+ ++P   T+ +L+ G+     + + +K    M+ + G  P N   ++S +    
Sbjct: 550 KEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAK-GIAP-NATTFNSLVKQYC 607

Query: 252 ----LKGCDGIYETVNSLKRMMERGCNP-GMTFFKLAFEECLTGQNLRGAEFIWGAMVGR 306
               LK    IY      K M  RG  P G T+  L    C   +N++ A F++  M G+
Sbjct: 608 IRNNLKAATAIY------KDMCSRGVGPDGKTYENLVKGHC-KARNMKEAWFLFQEMKGK 660

Query: 307 IGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWE 366
            GF      Y+++I  +    +   A ++ D+M   G   D + ++   +   KG++   
Sbjct: 661 -GFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAADKEIFDFFSDTKYKGKRPDT 719

Query: 367 ASGLFNEMVKNENVLNHENCRAA 389
                +E++  EN L  E  R A
Sbjct: 720 IVDPIDEII--ENYLVDEQLRGA 740


>gi|145336957|ref|NP_176459.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206054|sp|Q9SI78.1|PPR93_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62720
 gi|6630449|gb|AAF19537.1|AC007190_5 F23N19.8 [Arabidopsis thaliana]
 gi|62320514|dbj|BAD95075.1| PPR-repeat protein [Arabidopsis thaliana]
 gi|332195876|gb|AEE33997.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 485

 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 95/429 (22%), Positives = 170/429 (39%), Gaps = 56/429 (13%)

Query: 25  TFASHLDVPNLPPTIKTLCEIIANTPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPA 84
           TF++     NL   I   C++I + P P++ D   K L ++++     ++   + H    
Sbjct: 40  TFSTKRSSMNLEEEIDLFCKMIQSRPLPSIVD-FSKVLSKIAKSKNYDLVISLFHHMEVC 98

Query: 85  VKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAI-KSMKKENVLSLATFASVFS 143
                         H  Y++N+V++ L +   F      + K MK      + T +S+ +
Sbjct: 99  -----------GIGHDLYSYNIVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLIN 147

Query: 144 SYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKP 202
            +   +RV DAI     ME+ G + DV   N+++   C+ G   DA + F R+    ++ 
Sbjct: 148 GFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRA 207

Query: 203 DNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETV 262
           D  TY  L+ G       ++A +   +MV+     P NV  + + +   +K  +G +   
Sbjct: 208 DAVTYNSLVAGLCCSGRWSDAARLMRDMVMR-DIVP-NVITFTAVIDVFVK--EGKFSEA 263

Query: 263 NSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISL 322
             L   M R C                                     PD   YN +I+ 
Sbjct: 264 MKLYEEMTRRC-----------------------------------VDPDVFTYNSLING 288

Query: 323 YCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLN 382
            C       A ++LD MV  G  PD+ TYN L     K +++ E + LF EM +   V +
Sbjct: 289 LCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGD 348

Query: 383 HENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAK 442
                  ++ Y  +  P  A + +  M          T ++L+ GLC    + +A+   +
Sbjct: 349 TITYNTIIQGYFQAGRPDAAQEIFSRM---DSRPNIRTYSILLYGLCMNWRVEKALVLFE 405

Query: 443 GMAEKGIQV 451
            M +  I++
Sbjct: 406 NMQKSEIEL 414



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 80/361 (22%), Positives = 148/361 (40%), Gaps = 52/361 (14%)

Query: 125 KSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDG 184
           K ++   + S+  F+ V S    +      I+ F  ME  G  HD+++ N +++ +CR  
Sbjct: 59  KMIQSRPLPSIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNIVINCLCRCS 118

Query: 185 KTIDAWQFLRVVDGRIK----PDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDN 240
           + + A   L VV   +K    PD  T + L+ G+ +   V +A     +M  E+G+ PD 
Sbjct: 119 RFVIA---LSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKME-EMGFRPDV 174

Query: 241 VPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIW 300
           V                IY T+      ++  C  G+               +  A  ++
Sbjct: 175 V----------------IYNTI------IDGSCKIGL---------------VNDAVELF 197

Query: 301 GAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVK 360
             M  R G R D   YN +++  C S     A +L+ +MV     P++ T+  + +  VK
Sbjct: 198 DRM-ERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVK 256

Query: 361 GRKLWEASGLFNEMVK---NENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDL 417
             K  EA  L+ EM +   + +V  + +    + ++   D+   A +    M+   C   
Sbjct: 257 EGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDE---AKQMLDLMVTKGCLPD 313

Query: 418 SETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLK 477
             T N L+ G C    + E  K  + MA++G+       + + Q   +A +    +E+  
Sbjct: 314 VVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEIFS 373

Query: 478 K 478
           +
Sbjct: 374 R 374



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 57/259 (22%), Positives = 103/259 (39%), Gaps = 35/259 (13%)

Query: 122 DAIKSMK----KENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLL 177
           DA + M+    ++ V ++ TF +V   +V   +  +A+  ++ M +     DVF  NSL+
Sbjct: 227 DAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLI 286

Query: 178 SAICRDGKTIDAWQFLRV-VDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVI---- 232
           + +C  G+  +A Q L + V     PD  TY  L+ G+ K + V    K F EM      
Sbjct: 287 NGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLV 346

Query: 233 -----------------------EVGWDPDNVPAYDSYLITLLKGCDG--IYETVNSLKR 267
                                  E+    D+ P   +Y I L   C    + + +   + 
Sbjct: 347 GDTITYNTIIQGYFQAGRPDAAQEIFSRMDSRPNIRTYSILLYGLCMNWRVEKALVLFEN 406

Query: 268 MMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSN 327
           M +      +T + +         N+  A  ++ ++  + G +PD   Y  MIS +C   
Sbjct: 407 MQKSEIELDITTYNIVIHGMCKIGNVEDAWDLFRSLSCK-GLKPDVVSYTTMISGFCRKR 465

Query: 328 ETGAAMKLLDEMVYNGAFP 346
           +   +  L  +M  +G  P
Sbjct: 466 QWDKSDLLYRKMQEDGLLP 484


>gi|414872431|tpg|DAA50988.1| TPA: hypothetical protein ZEAMMB73_390723 [Zea mays]
          Length = 1627

 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 103/438 (23%), Positives = 175/438 (39%), Gaps = 53/438 (12%)

Query: 52   PTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVK--FFRWSAYQLNDKHSPYAWNLVVD 109
            P  E  L+  ++RV    V +V+K      G  VK  FFRW+A + N +H    +  ++ 
Sbjct: 1065 PDAEKALEVLMLRVDHWLVREVMKTDV---GVNVKMQFFRWAAKRRNYEHDTSTYMALIH 1121

Query: 110  LLGKNCLFDAMWDAIKSMKKEN--VLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCK 167
             L     +  MW  I+ M +    V++    + V      A  V+ AIT F  ++   C+
Sbjct: 1122 CLEVVEQYGEMWKMIQEMVRNPICVVTPTELSDVVRMLGNAKMVRQAITIFYQIKTRKCQ 1181

Query: 168  HDVFALNSLLSAICRDGKTIDAWQFLR--VVDGRIKPDNDTYAILLEGWEKERDVANAKK 225
                A NS++  +  +G+     Q       +G   PD  TY+ L+  + K     +A +
Sbjct: 1182 PIAQAYNSMIIMLMHEGQYEKVHQLYNEMSTEGHCFPDTVTYSALISAFCKLGRRDSAIQ 1241

Query: 226  TFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFE 285
               EM  E+G  P       + LI L    +  +  ++  + M  + C P +      + 
Sbjct: 1242 LLNEMK-EIGMQPTT--KIYTMLIALFFKFNDAHGALSLFEEMRHQYCRPDV----FTYT 1294

Query: 286  ECLTGQNLRG---AEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYN 342
            E + G    G     + +   + R G RPDT   N MI+    +     AMKL  EM   
Sbjct: 1295 ELIRGLGKAGRIDEAYHFFCEMQREGCRPDTVFMNNMINFLGKAGRLDDAMKLFQEMETL 1354

Query: 343  GAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVA 402
               P + TYN +       + L+E+    +E+                            
Sbjct: 1355 RCIPSVVTYNTII------KALFESKSRASEVP--------------------------- 1381

Query: 403  IKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQI 462
              +++ M E+  S  S T ++L+ G C  + + +A+   + M EKG    P A   L   
Sbjct: 1382 -SWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDA 1440

Query: 463  LIKARKEAVYEELLKKCK 480
            L KA++  +  EL ++ K
Sbjct: 1441 LGKAKRYDLACELFQELK 1458



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 64/264 (24%), Positives = 113/264 (42%), Gaps = 11/264 (4%)

Query: 102  YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYV-VADRVKDAITTFDV 160
            + +  ++  LGK    D  +     M++E       F +   +++  A R+ DA+  F  
Sbjct: 1291 FTYTELIRGLGKAGRIDEAYHFFCEMQREGCRPDTVFMNNMINFLGKAGRLDDAMKLFQE 1350

Query: 161  MEQYGCKHDVFALNSLLSAICRD---GKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKE 217
            ME   C   V   N+++ A+         + +W F R+ +  I P + TY+IL++G+ K 
Sbjct: 1351 METLRCIPSVVTYNTIIKALFESKSRASEVPSW-FERMKESGISPSSFTYSILIDGFCKT 1409

Query: 218  RDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGC-NPG 276
              +  A     EM  E G+ P   PA    LI  L G    Y+    L + ++  C +  
Sbjct: 1410 NRMEKAMMLLEEM-DEKGFPP--CPAAYCSLIDAL-GKAKRYDLACELFQELKENCGSSS 1465

Query: 277  MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLL 336
               + +  +       L  A  ++  M  ++G  PD + YN ++S    +     A+  +
Sbjct: 1466 ARVYAVMIKHLGKAGRLDDAINMFDEM-NKLGCAPDVYAYNALMSGLARTGMLDEALSTM 1524

Query: 337  DEMVYNGAFPDIQTYNILFEFLVK 360
              M  +G  PDI +YNI+   L K
Sbjct: 1525 RRMQEHGCIPDINSYNIILNGLAK 1548



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 84/172 (48%), Gaps = 8/172 (4%)

Query: 101  PYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYV-VADRVKDAITTFD 159
            P A+  ++D LGK   +D   +  + +K+    S A   +V   ++  A R+ DAI  FD
Sbjct: 1431 PAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMFD 1490

Query: 160  VMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVD--GRIKPDNDTYAILLEGWEKE 217
             M + GC  DV+A N+L+S + R G   +A   +R +   G I PD ++Y I+L G  K 
Sbjct: 1491 EMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCI-PDINSYNIILNGLAKT 1549

Query: 218  RDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMM 269
                 A +    M  +    PD V +Y++ L  L     G++E  + L + M
Sbjct: 1550 GGPHRAMEMLSNMK-QSTVRPDVV-SYNTVLGALSHA--GMFEEASKLMKEM 1597



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 64/298 (21%), Positives = 121/298 (40%), Gaps = 50/298 (16%)

Query: 105  NLVVDLLGKNCLFDAMWDAIKSMKKENVL----SLATFASVFSS-YVVADRVKDAITTFD 159
            N +++ LGK    D   DA+K  ++   L    S+ T+ ++  + +    R  +  + F+
Sbjct: 1329 NNMINFLGKAGRLD---DAMKLFQEMETLRCIPSVVTYNTIIKALFESKSRASEVPSWFE 1385

Query: 160  VMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKP----------------- 202
             M++ G     F  + L+   C+  +   A   L  +D +  P                 
Sbjct: 1386 RMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAK 1445

Query: 203  -------------------DNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPA 243
                                   YA++++   K   + +A   F EM  ++G  PD V A
Sbjct: 1446 RYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMN-KLGCAPD-VYA 1503

Query: 244  YDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECL-TGQNLRGAEFIWGA 302
            Y++ L++ L     + E +++++RM E GC P +  + +       TG   R  E +  +
Sbjct: 1504 YNA-LMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEML--S 1560

Query: 303  MVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVK 360
             + +   RPD   YN ++    ++     A KL+ EM   G   D+ TY+ + E + K
Sbjct: 1561 NMKQSTVRPDVVSYNTVLGALSHAGMFEEASKLMKEMNTLGFEYDLITYSSILEAIGK 1618


>gi|41152688|dbj|BAD08213.1| hypothetical protein [Oryza sativa Indica Group]
          Length = 762

 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 89/382 (23%), Positives = 158/382 (41%), Gaps = 16/382 (4%)

Query: 81  PGPAVKFFRWSAYQLNDKHSP--YAWNLVVDLLGKNCLFDAMWDAIKSMKKENV-LSLAT 137
           P  AV  +   A     K +P  + + +++    +    D  + A+ ++ K+   +   T
Sbjct: 65  PAAAVSRYNRMARAGAGKVTPTVHTYGILIGCCCRAGRLDLGFAALGNVVKKGFRVEAIT 124

Query: 138 FASVFSSYVVADRVKDAI-TTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           F  +        R  DA+      M +  C  DVF+   LL  +C + ++ +A + L ++
Sbjct: 125 FTPLLKGLCADKRTSDAMDIVLRRMTELSCMPDVFSCTILLKGLCDENRSQEALELLHMM 184

Query: 197 ----DGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
                G   PD  +Y  ++ G+ KE D   A  T+ EM ++    PD V  Y S +  L 
Sbjct: 185 ADDRGGGSAPDVVSYTTVINGFFKEGDSDKAYSTYHEM-LDRRISPD-VVTYSSIIAALC 242

Query: 253 KGCDGIYETVNSLKRMMERGCNPG-MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRP 311
           KG   + + +  L  M++ G  P  MT+  +    C + Q      F+    +   G  P
Sbjct: 243 KG-QAMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFL--KKMRSDGVEP 299

Query: 312 DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLF 371
           D   YN ++   C +  +  A K+ D M   G  PDI TY  L +       L E   L 
Sbjct: 300 DVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALL 359

Query: 372 NEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDM 431
           + MV+N    +H      +  Y   +    A+  +  M ++  +    T   ++  LC  
Sbjct: 360 DLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKS 419

Query: 432 HMLPEAVKYAKGMAEKGIQVTP 453
             + +A+ Y + M ++G+  TP
Sbjct: 420 GSVDDAMLYFEQMIDEGL--TP 439



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 98/476 (20%), Positives = 186/476 (39%), Gaps = 94/476 (19%)

Query: 90  WSAYQ--LNDKHSP--YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSS 144
           +S Y   L+ + SP    ++ ++  L K    D   + + +M K  V+ +  T+ S+   
Sbjct: 216 YSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHG 275

Query: 145 YVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR----- 199
           Y  +++ K+AI     M   G + DV   NSL+  +C++G++ +A +    +  R     
Sbjct: 276 YCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPD 335

Query: 200 -------------------------------IKPDNDTYAILLEGWEKERDVANAKKTFG 228
                                          I PD+  + IL+  + K+  V  A   F 
Sbjct: 336 IATYCTLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFS 395

Query: 229 EMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMT---------- 278
           +M  + G +P NV  Y + +  L K    + + +   ++M++ G  P +           
Sbjct: 396 KMR-QHGLNP-NVVTYGAVIGILCKS-GSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLC 452

Query: 279 --------------------------FFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD 312
                                     F  +    C  G+ +  +E ++  MV RIG +P+
Sbjct: 453 IFDKWDKAEELILEMLDRGICLNTIFFNSIIHSHCKEGRVIE-SEKLFDLMV-RIGVKPN 510

Query: 313 THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFN 372
              Y+ +I  YC + +   A KLL  M   G  PD  TYN L     +  ++ +A  LF 
Sbjct: 511 VITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFK 570

Query: 373 EMVK---NENVLNHENCRAAV---RVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVA 426
           EMV    + N++ +      +   R    + + YV I      +E        T N+++ 
Sbjct: 571 EMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVGITKSGTQLE------LSTYNIILH 624

Query: 427 GLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKCKAH 482
           GLC  ++  EA++  + +    +Q+     + +   L+K  +    ++L     A+
Sbjct: 625 GLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSAN 680



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 83/333 (24%), Positives = 139/333 (41%), Gaps = 23/333 (6%)

Query: 105 NLVV--DLLGKNCLFDAMWDAIKSMKKENV-----LSLATFASVFSSYVVADRVKDAITT 157
           N++V   L+   C+FD  WD  + +  E +     L+   F S+  S+    RV ++   
Sbjct: 440 NIIVYTSLIHSLCIFDK-WDKAEELILEMLDRGICLNTIFFNSIIHSHCKEGRVIESEKL 498

Query: 158 FDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYAILLEGWEK 216
           FD+M + G K +V   ++L+   C  GK  +A + L  +    +KPD  TY  L+ G+ +
Sbjct: 499 FDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCR 558

Query: 217 ERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETV-NSLKRMMERGCNP 275
              + +A   F EMV   G  P N+  Y+  L        G++ T   +  + +  G   
Sbjct: 559 VSRMDDALALFKEMV-SSGVSP-NIITYNIIL-------QGLFHTRRTAAAKELYVGITK 609

Query: 276 GMTFFKLA----FEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGA 331
             T  +L+        L   NL          +     + +T  +N+MI           
Sbjct: 610 SGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDE 669

Query: 332 AMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVR 391
           A  L   +  NG  PD++TY+++ E L++   L E   LF  M +N    N     + VR
Sbjct: 670 AKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVR 729

Query: 392 VYMDSDDPYVAIKFWKYMIENHCSDLSETGNLL 424
             +   D   A  +   + E H S  + T +LL
Sbjct: 730 KLLQRGDITRAGTYLSMIDEKHFSLEASTASLL 762



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 71/308 (23%), Positives = 124/308 (40%), Gaps = 15/308 (4%)

Query: 152 KDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVD---GRIKPDNDTYA 208
           +DA   F+ + + G    ++ LN  L+ + R        ++ R+     G++ P   TY 
Sbjct: 32  EDARHVFEELLRRGRGASIYGLNRALADVARHSPAAAVSRYNRMARAGAGKVTPTVHTYG 91

Query: 209 ILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNS---- 264
           IL+    +   +       G  V++ G+  + +         LLKG      T ++    
Sbjct: 92  ILIGCCCRAGRLDLGFAALGN-VVKKGFRVEAIT-----FTPLLKGLCADKRTSDAMDIV 145

Query: 265 LKRMMERGCNPGMTFFKLAFEE-CLTGQNLRGAEFIWGAMVGRIGFR-PDTHMYNMMISL 322
           L+RM E  C P +    +  +  C   ++    E +      R G   PD   Y  +I+ 
Sbjct: 146 LRRMTELSCMPDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSYTTVING 205

Query: 323 YCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLN 382
           +    ++  A     EM+     PD+ TY+ +   L KG+ + +A  +   MVKN  + N
Sbjct: 206 FFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPN 265

Query: 383 HENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAK 442
                + +  Y  S+ P  AI F K M  +       T N L+  LC      EA K   
Sbjct: 266 CMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFD 325

Query: 443 GMAEKGIQ 450
            M ++G++
Sbjct: 326 SMTKRGLE 333


>gi|297724885|ref|NP_001174806.1| Os06g0499301 [Oryza sativa Japonica Group]
 gi|52076487|dbj|BAD45366.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|125597333|gb|EAZ37113.1| hypothetical protein OsJ_21452 [Oryza sativa Japonica Group]
 gi|255677074|dbj|BAH93534.1| Os06g0499301 [Oryza sativa Japonica Group]
          Length = 642

 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/265 (26%), Positives = 123/265 (46%), Gaps = 17/265 (6%)

Query: 119 AMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLL 177
           A    ++ M++E V+  + T+ +V    V   RVKDA    + ME+ G   + F  ++++
Sbjct: 296 AAMGVMRRMEREGVVPGVMTYGAVVDGLVRCGRVKDAWKVAEEMERNGLAWNEFVYSTVI 355

Query: 178 SAICRDGK---TIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEV 234
           +  C+ G+    +  W+ +  V   ++P+   Y+ ++ G      +  A+  F EM I  
Sbjct: 356 TGFCKSGEIDCALKVWEAM--VASPVRPNVVLYSAMIGGLANFGKMTEAELLFREM-IHS 412

Query: 235 GWDPDNVPAYDSYLITLLKGCDGIYETVNSL---KRMMERGCNPGMTFFKLAFEECLTGQ 291
              P N+  Y S    +++G   I +T  +L   + M+  GC P    + +         
Sbjct: 413 KCAP-NIITYGS----IIQGYFKIGDTSRALSVWEEMIGAGCVPNAVSYSILINGLCNVG 467

Query: 292 NLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNG-AFPDIQT 350
            L+ A  +W  M+ R G  PDT  Y  MI   C S      ++L  +M+ +G A PD+ +
Sbjct: 468 RLKDAMMVWKHMLDR-GCAPDTIAYTSMIKGLCVSGMVDGGLRLFYDMLASGHADPDVIS 526

Query: 351 YNILFEFLVKGRKLWEASGLFNEMV 375
           YN+L + L+  + L  A  L N M+
Sbjct: 527 YNVLLDGLLLAKDLPRAMDLLNRML 551



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 69/294 (23%), Positives = 133/294 (45%), Gaps = 12/294 (4%)

Query: 159 DVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR--VVDGRIKPDNDTYAILLEGWEK 216
           +++  +    D F  ++++SA+   G+  DA   +   V DG +    + +  +L    +
Sbjct: 198 EIIPGWDLAPDKFTYSTVVSALADAGRVDDAVALVHEMVADGVVA--AEAFNPVLRAMLR 255

Query: 217 ERDVANAKKTFGEMVIEVGWDPDNVPAYDSY--LITLLKGCDGIYETVNSLKRMMERGCN 274
             DV  A K FG M ++       VP   +Y  L+  L  C      +  ++RM   G  
Sbjct: 256 AGDVKGAAKLFGFMQLK-----GCVPTTATYNVLVHGLLVCGRAGAAMGVMRRMEREGVV 310

Query: 275 PGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMK 334
           PG+  +    +  +    ++ A  +   M  R G   +  +Y+ +I+ +C S E   A+K
Sbjct: 311 PGVMTYGAVVDGLVRCGRVKDAWKVAEEM-ERNGLAWNEFVYSTVITGFCKSGEIDCALK 369

Query: 335 LLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYM 394
           + + MV +   P++  Y+ +   L    K+ EA  LF EM+ ++   N     + ++ Y 
Sbjct: 370 VWEAMVASPVRPNVVLYSAMIGGLANFGKMTEAELLFREMIHSKCAPNIITYGSIIQGYF 429

Query: 395 DSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448
              D   A+  W+ MI   C   + + ++L+ GLC++  L +A+   K M ++G
Sbjct: 430 KIGDTSRALSVWEEMIGAGCVPNAVSYSILINGLCNVGRLKDAMMVWKHMLDRG 483


>gi|18424537|ref|NP_568948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170898|sp|Q9FIT7.1|PP442_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g61990, mitochondrial; Flags: Precursor
 gi|10176917|dbj|BAB10161.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010163|gb|AED97546.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 974

 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 76/310 (24%), Positives = 131/310 (42%), Gaps = 37/310 (11%)

Query: 100 SPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTF 158
           SPY +  VV  +  +   D  ++ +K M       ++  + ++  +++   R  DA+   
Sbjct: 416 SPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVL 475

Query: 159 DVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKE 217
             M++ G   D+F  NSL+  + +  +  +A  FL  +V+  +KP+  TY   + G+ + 
Sbjct: 476 KEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEA 535

Query: 218 RDVANAKKTFGEMVIEVGWDPDNV-------------------PAYDSYL---------- 248
            + A+A K   EM  E G  P+ V                    AY S +          
Sbjct: 536 SEFASADKYVKEMR-ECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKT 594

Query: 249 -ITLLKGC---DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMV 304
              L+ G    D + +     + M  +G  P +  + +         N++ A  I+  MV
Sbjct: 595 YTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMV 654

Query: 305 GRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKL 364
              G  P+  +YNM++  +C S E   A +LLDEM   G  P+  TY  + +   K   L
Sbjct: 655 EE-GLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDL 713

Query: 365 WEASGLFNEM 374
            EA  LF+EM
Sbjct: 714 AEAFRLFDEM 723



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 60/222 (27%), Positives = 93/222 (41%), Gaps = 7/222 (3%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-V 195
           T+ +  S Y+ A     A      M + G   +      L++  C+ GK I+A    R +
Sbjct: 524 TYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSM 583

Query: 196 VDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
           VD  I  D  TY +L+ G  K   V +A++ F EM  + G  PD V +Y   LI      
Sbjct: 584 VDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGK-GIAPD-VFSY-GVLINGFSKL 640

Query: 256 DGIYETVNSLKRMMERGCNPGMTFFKLAFEE-CLTGQNLRGAEFIWGAMVGRIGFRPDTH 314
             + +  +    M+E G  P +  + +     C +G+  +  E +    V   G  P+  
Sbjct: 641 GNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVK--GLHPNAV 698

Query: 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFE 356
            Y  +I  YC S +   A +L DEM   G  PD   Y  L +
Sbjct: 699 TYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVD 740



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 105/428 (24%), Positives = 169/428 (39%), Gaps = 72/428 (16%)

Query: 117 FDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRV---KDAI---------TTFDV--- 160
            D  WD  K M + NV+  + T+  +  ++  A  V   KD +          T +V   
Sbjct: 202 LDLFWDVYKGMVERNVVFDVKTYHMLIIAHCRAGNVQLGKDVLFKTEKEFRTATLNVDGA 261

Query: 161 ---MEQYGCKHDV---FALNSLLSAICRDGKTIDAWQFLRVVDG-RIKPDNDTYAILLEG 213
               E   CK  V   +  + L+  +C+  +  DA   L  +D   +  DN TY++L++G
Sbjct: 262 LKLKESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDG 321

Query: 214 WEKERDVANAKKTFGEMVIE-VGWDPDNVPAYDSYLITLLKGCDGIYETVNSL-KRMMER 271
             K R+   AK    EMV   +   P     YD  +  + K  +G+ E   +L   M+  
Sbjct: 322 LLKGRNADAAKGLVHEMVSHGINIKP---YMYDCCICVMSK--EGVMEKAKALFDGMIAS 376

Query: 272 GCNPGMTFFKLAFEECLTGQNLR-GAEFI--------------WGAMVGRI--------- 307
           G  P    +    E     +N+R G E +              +G +V  +         
Sbjct: 377 GLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGA 436

Query: 308 ----------GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEF 357
                     G RP+  +Y  +I  +  ++  G AM++L EM   G  PDI  YN L   
Sbjct: 437 YNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIG 496

Query: 358 LVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDL 417
           L K +++ EA     EMV+N    N     A +  Y+++ +   A K+ K M E  C  L
Sbjct: 497 LSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRE--CGVL 554

Query: 418 SETGNLLVAGL----CDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYE 473
                +L  GL    C    + EA    + M ++GI       + L   L K  K    E
Sbjct: 555 PN--KVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAE 612

Query: 474 ELLKKCKA 481
           E+ ++ + 
Sbjct: 613 EIFREMRG 620



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 66/284 (23%), Positives = 121/284 (42%), Gaps = 23/284 (8%)

Query: 104 WNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVME 162
           + ++++ L KN   D   +  + M+ + +   + ++  + + +     ++ A + FD M 
Sbjct: 595 YTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMV 654

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVA 221
           + G   +V   N LL   CR G+   A + L  +  + + P+  TY  +++G+ K  D+A
Sbjct: 655 EEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLA 714

Query: 222 NAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMM------ERGCNP 275
            A + F EM ++ G  PD+         TL+ GC      +N ++R +      ++GC  
Sbjct: 715 EAFRLFDEMKLK-GLVPDSF-----VYTTLVDGCC----RLNDVERAITIFGTNKKGCAS 764

Query: 276 GMTFFKLAFEECLT-GQNLRGAEFIWGAMVG---RIGFRPDTHMYNMMISLYCYSNETGA 331
               F          G+     E +   M G   R G +P+   YN+MI   C      A
Sbjct: 765 STAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFG-KPNDVTYNIMIDYLCKEGNLEA 823

Query: 332 AMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
           A +L  +M      P + TY  L     K  +  E   +F+E +
Sbjct: 824 AKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAI 867



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 61/264 (23%), Positives = 99/264 (37%), Gaps = 16/264 (6%)

Query: 202 PDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG------C 255
           P    YA L+EG+ +E++V    +   EM         N+        T++KG       
Sbjct: 380 PQAQAYASLIEGYCREKNVRQGYELLVEM------KKRNIVISPYTYGTVVKGMCSSGDL 433

Query: 256 DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHM 315
           DG Y   N +K M+  GC P +  +    +  L       A  +   M  + G  PD   
Sbjct: 434 DGAY---NIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQ-GIAPDIFC 489

Query: 316 YNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
           YN +I     +     A   L EMV NG  P+  TY       ++  +   A     EM 
Sbjct: 490 YNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMR 549

Query: 376 KNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLP 435
           +   + N   C   +  Y        A   ++ M++      ++T  +L+ GL     + 
Sbjct: 550 ECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVD 609

Query: 436 EAVKYAKGMAEKGIQVTPFALSKL 459
           +A +  + M  KGI    F+   L
Sbjct: 610 DAEEIFREMRGKGIAPDVFSYGVL 633


>gi|357121285|ref|XP_003562351.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 624

 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 71/294 (24%), Positives = 129/294 (43%), Gaps = 8/294 (2%)

Query: 93  YQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRV 151
           YQ N       +N++VD   +N L D + + ++ M +   +  + T+ +V + +     +
Sbjct: 328 YQKNCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCMPDVITYTTVINGFCKEGLI 387

Query: 152 KDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAIL 210
            +A+     M   GCK +  +   +L  +C   + +DA + + R++     P+  T+  +
Sbjct: 388 DEAVMLLKNMPSCGCKPNTISYTIVLKGLCSTERWVDAEELMSRMIQQGCLPNPVTFNTI 447

Query: 211 LEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMME 270
           +    K+  V  A +   +M++  G +PD + +Y + +  L K      E +  L  M+ 
Sbjct: 448 INFLCKKGLVEQAIELLKQMLVN-GCNPDLI-SYSTVIDGLGKA-GKTEEALELLNVMIN 504

Query: 271 RGCNPG-MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNET 329
           +G  P  +T+  +AF     G+  +  +         I  R D  +YN +IS  C   ET
Sbjct: 505 KGITPNVITYSSMAFALAREGRIDKVIQMFDNIQDATI--RSDAVLYNAVISSLCKRRET 562

Query: 330 GAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNH 383
             A+  L  MV NG  P+  TY  L + L     L EA  L +E+     V  H
Sbjct: 563 DLAIDFLAYMVSNGCMPNESTYTALIKGLASEGLLCEAQDLLSELCSRRAVRKH 616



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 76/313 (24%), Positives = 137/313 (43%), Gaps = 21/313 (6%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           ++  + +V      ADR + A      M Q  C  D    N L+   C++G      + L
Sbjct: 300 NVVCYNTVLKGICSADRWEKAEELLTEMYQKNCPLDDVTFNILVDFFCQNGLVDRVIELL 359

Query: 194 -RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
            ++++    PD  TY  ++ G+ KE  +  A      M    G  P+ +    SY I +L
Sbjct: 360 EQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLKNMP-SCGCKPNTI----SYTI-VL 413

Query: 253 KGCDGIYETVNS---LKRMMERGCNPG-MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIG 308
           KG       V++   + RM+++GC P  +TF  +    C  G   +  E +   +V   G
Sbjct: 414 KGLCSTERWVDAEELMSRMIQQGCLPNPVTFNTIINFLCKKGLVEQAIELLKQMLVN--G 471

Query: 309 FRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEAS 368
             PD   Y+ +I     + +T  A++LL+ M+  G  P++ TY+ +   L +  ++ +  
Sbjct: 472 CNPDLISYSTVIDGLGKAGKTEEALELLNVMINKGITPNVITYSSMAFALAREGRIDKVI 531

Query: 369 GLFNEM----VKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLL 424
            +F+ +    ++++ VL +    A +       +  +AI F  YM+ N C     T   L
Sbjct: 532 QMFDNIQDATIRSDAVLYN----AVISSLCKRRETDLAIDFLAYMVSNGCMPNESTYTAL 587

Query: 425 VAGLCDMHMLPEA 437
           + GL    +L EA
Sbjct: 588 IKGLASEGLLCEA 600



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 77/384 (20%), Positives = 148/384 (38%), Gaps = 15/384 (3%)

Query: 104 WNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQ 163
           + +V  L G+  + DA+    +   +  V     +  +  S   +     A+   + +  
Sbjct: 120 FPVVRGLCGRGRIADALAVLDEMTSRSCVPIPPMYHVIIESACRSGGYSSALRVLEALHA 179

Query: 164 YGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVD-GRIKPDNDTYAILLEGWEKERDVAN 222
            G   D    N +++AIC  G   +  + LR +     + D  +Y  +L+G    +   +
Sbjct: 180 KGSTLDTGNCNLVINAICDQGCVDEGLEMLRKLPLFGCEADIVSYNAVLKGLCAAKRWGD 239

Query: 223 AKKTFGEMV---------IEVGWDPDNVPAYDSYLITLLKGCDGIYETVNS-LKRMMERG 272
            ++   EMV          + G  PD +  Y + +  + K  +G +E  N  L RM   G
Sbjct: 240 VEELMDEMVKVHEALSQMAQHGCTPD-IRMYATIIDGICK--EGHHEVANEILSRMPSYG 296

Query: 273 CNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAA 332
             P +  +    +   +      AE +   M  +     D   +N+++  +C +      
Sbjct: 297 LKPNVVCYNTVLKGICSADRWEKAEELLTEMYQK-NCPLDDVTFNILVDFFCQNGLVDRV 355

Query: 333 MKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRV 392
           ++LL++M+ +G  PD+ TY  +     K   + EA  L   M       N  +    ++ 
Sbjct: 356 IELLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLKNMPSCGCKPNTISYTIVLKG 415

Query: 393 YMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVT 452
              ++    A +    MI+  C     T N ++  LC   ++ +A++  K M   G    
Sbjct: 416 LCSTERWVDAEELMSRMIQQGCLPNPVTFNTIINFLCKKGLVEQAIELLKQMLVNGCNPD 475

Query: 453 PFALSKLKQILIKARKEAVYEELL 476
             + S +   L KA K     ELL
Sbjct: 476 LISYSTVIDGLGKAGKTEEALELL 499



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 74/333 (22%), Positives = 128/333 (38%), Gaps = 25/333 (7%)

Query: 151 VKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-----------RVVDGR 199
           V + +     +  +GC+ D+ + N++L  +C   +  D  + +           ++    
Sbjct: 202 VDEGLEMLRKLPLFGCEADIVSYNAVLKGLCAAKRWGDVEELMDEMVKVHEALSQMAQHG 261

Query: 200 IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG---CD 256
             PD   YA +++G  KE     A +    M    G  P NV  Y+    T+LKG    D
Sbjct: 262 CTPDIRMYATIIDGICKEGHHEVANEILSRMP-SYGLKP-NVVCYN----TVLKGICSAD 315

Query: 257 GIYETVNSLKRMMERGCN-PGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHM 315
              +    L  M ++ C    +TF  L    C  G   R  E +   +    G  PD   
Sbjct: 316 RWEKAEELLTEMYQKNCPLDDVTFNILVDFFCQNGLVDRVIELLEQML--EHGCMPDVIT 373

Query: 316 YNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
           Y  +I+ +C       A+ LL  M   G  P+  +Y I+ + L    +  +A  L + M+
Sbjct: 374 YTTVINGFCKEGLIDEAVMLLKNMPSCGCKPNTISYTIVLKGLCSTERWVDAEELMSRMI 433

Query: 376 KNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLP 435
           +   + N       +           AI+  K M+ N C+    + + ++ GL       
Sbjct: 434 QQGCLPNPVTFNTIINFLCKKGLVEQAIELLKQMLVNGCNPDLISYSTVIDGLGKAGKTE 493

Query: 436 EAVKYAKGMAEKGIQVTPFALSKLKQILIKARK 468
           EA++    M  KGI  TP  ++        AR+
Sbjct: 494 EALELLNVMINKGI--TPNVITYSSMAFALARE 524



 Score = 47.4 bits (111), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 71/361 (19%), Positives = 136/361 (37%), Gaps = 31/361 (8%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           T+  V        R+ DA+   D M    C       + ++ + CR G    A + L  +
Sbjct: 118 TYFPVVRGLCGRGRIADALAVLDEMTSRSCVPIPPMYHVIIESACRSGGYSSALRVLEAL 177

Query: 197 DGRIKP-DNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG- 254
             +    D     +++     +  V    +   ++ +  G + D V +Y++ L  L    
Sbjct: 178 HAKGSTLDTGNCNLVINAICDQGCVDEGLEMLRKLPL-FGCEADIV-SYNAVLKGLCAAK 235

Query: 255 --------CDGIYETVNSLKRMMERGCNPGMTFFKLAFEE-CLTGQNLRGAEFIWGAMVG 305
                    D + +   +L +M + GC P +  +    +  C  G +    E +  + + 
Sbjct: 236 RWGDVEELMDEMVKVHEALSQMAQHGCTPDIRMYATIIDGICKEGHHEVANEIL--SRMP 293

Query: 306 RIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLW 365
             G +P+   YN ++   C ++    A +LL EM       D  T+NIL +F  +     
Sbjct: 294 SYGLKPNVVCYNTVLKGICSADRWEKAEELLTEMYQKNCPLDDVTFNILVDFFCQ----- 348

Query: 366 EASGLFNEMVK-NENVLNHENCRAAVRVYMDSDDPYV-------AIKFWKYMIENHCSDL 417
             +GL + +++  E +L H  C   V  Y    + +        A+   K M    C   
Sbjct: 349 --NGLVDRVIELLEQMLEH-GCMPDVITYTTVINGFCKEGLIDEAVMLLKNMPSCGCKPN 405

Query: 418 SETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLK 477
           + +  +++ GLC      +A +    M ++G    P   + +   L K        ELLK
Sbjct: 406 TISYTIVLKGLCSTERWVDAEELMSRMIQQGCLPNPVTFNTIINFLCKKGLVEQAIELLK 465

Query: 478 K 478
           +
Sbjct: 466 Q 466



 Score = 46.6 bits (109), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 51/225 (22%), Positives = 94/225 (41%), Gaps = 14/225 (6%)

Query: 173 LNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVI 232
           L++L+ ++C  G+T DA + L    G      D Y  ++ G+ +   V  A++    + +
Sbjct: 55  LSALIRSLCVAGRTADAVRALDAA-GNAAGVVD-YNAMVAGYCRVGQVEAARRLAAAVPV 112

Query: 233 EVGWDPDNVPAYDSY-LITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQ 291
                P N  AY  + ++  L G   I + +  L  M  R C P    + +  E      
Sbjct: 113 -----PPN--AYTYFPVVRGLCGRGRIADALAVLDEMTSRSCVPIPPMYHVIIESACRSG 165

Query: 292 NLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTY 351
               A  +  A+  + G   DT   N++I+  C        +++L ++   G   DI +Y
Sbjct: 166 GYSSALRVLEALHAK-GSTLDTGNCNLVINAICDQGCVDEGLEMLRKLPLFGCEADIVSY 224

Query: 352 NILFEFLVKGRKLWEASGLFNEMVKNENVLN---HENCRAAVRVY 393
           N + + L   ++  +   L +EMVK    L+      C   +R+Y
Sbjct: 225 NAVLKGLCAAKRWGDVEELMDEMVKVHEALSQMAQHGCTPDIRMY 269


>gi|255661004|gb|ACU25671.1| pentatricopeptide repeat-containing protein [Phyla dulcis]
          Length = 369

 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/294 (22%), Positives = 132/294 (44%), Gaps = 6/294 (2%)

Query: 87  FFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKEN-VLSLATFASVFSSY 145
           F  W       + S  ++N ++ +L  N   +      + M K   V    T+ ++ + +
Sbjct: 45  FELWEMMGREGRRSVASFNTMIRVLFDNGKVEEAMSIRELMAKSGFVEDSKTYGTLVNGF 104

Query: 146 VVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGRIKPDN 204
                +  ++   ++ EQ G   D FA +++++A+C++ K   A   L  ++    KP+ 
Sbjct: 105 CKNRYINKSLQVLEIAEQKGGVLDAFAYSAMINALCKEAKLEKAVCVLNGMIKSGCKPNT 164

Query: 205 DTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNS 264
             Y  L++G      + +A + F EM       P ++  Y+  +  L KG D   E  + 
Sbjct: 165 CVYNALIKGLVGASKLDDAIRVFHEM--GTTHSPPDIVTYNILINGLFKG-DRFGEAYDL 221

Query: 265 LKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYC 324
           +K M+E+G +P +  + L  +    G  +  A  +W   V + GF+PD  M+N++I   C
Sbjct: 222 VKEMLEKGLDPSVITYSLLMKGLCLGDKVEMALQLWN-QVTKKGFKPDVQMHNILIHGLC 280

Query: 325 YSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNE 378
              +T  A+ L  +M      P++ T N L +   K   +  A  ++  +++NE
Sbjct: 281 SVGKTQLALSLYLDMNRWNCAPNLVTQNTLMQGFYKDGNIRNALVIWARILRNE 334



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 64/303 (21%), Positives = 128/303 (42%), Gaps = 55/303 (18%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQF--LR 194
            + ++ + +  A R++D    +++M + G +  V + N+++  +  +GK  +A     L 
Sbjct: 27  VYNAMLNGFYRAGRIEDCFELWEMMGREG-RRSVASFNTMIRVLFDNGKVEEAMSIRELM 85

Query: 195 VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVP---AYDSYLITL 251
              G ++ D+ TY  L+ G+ K R +  + +     V+E+      V    AY + +  L
Sbjct: 86  AKSGFVE-DSKTYGTLVNGFCKNRYINKSLQ-----VLEIAEQKGGVLDAFAYSAMINAL 139

Query: 252 LKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRP 311
            K    + + V  L  M++ GC                                    +P
Sbjct: 140 CKEAK-LEKAVCVLNGMIKSGC------------------------------------KP 162

Query: 312 DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLF 371
           +T +YN +I     +++   A+++  EM    + PDI TYNIL   L KG +  EA  L 
Sbjct: 163 NTCVYNALIKGLVGASKLDDAIRVFHEMGTTHSPPDIVTYNILINGLFKGDRFGEAYDLV 222

Query: 372 NEMVK---NENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGL 428
            EM++   + +V+ +      + +    D   +A++ W  + +       +  N+L+ GL
Sbjct: 223 KEMLEKGLDPSVITYSLLMKGLCL---GDKVEMALQLWNQVTKKGFKPDVQMHNILIHGL 279

Query: 429 CDM 431
           C +
Sbjct: 280 CSV 282



 Score = 43.9 bits (102), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 52/230 (22%), Positives = 99/230 (43%), Gaps = 17/230 (7%)

Query: 115 CLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALN 174
           C+ + M   IKS  K N      + ++    V A ++ DAI  F  M       D+   N
Sbjct: 150 CVLNGM---IKSGCKPNT---CVYNALIKGLVGASKLDDAIRVFHEMGTTHSPPDIVTYN 203

Query: 175 SLLSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIE 233
            L++ + +  +  +A+  ++ +++  + P   TY++L++G      V  A + + + V +
Sbjct: 204 ILINGLFKGDRFGEAYDLVKEMLEKGLDPSVITYSLLMKGLCLGDKVEMALQLWNQ-VTK 262

Query: 234 VGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERG---CNPGMTFFKLAFEECLTG 290
            G+ PD V  ++     L+ G   + +T  +L   ++     C P +       +     
Sbjct: 263 KGFKPD-VQMHN----ILIHGLCSVGKTQLALSLYLDMNRWNCAPNLVTQNTLMQGFYKD 317

Query: 291 QNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMV 340
            N+R A  IW A + R   +PD   YN+ +   C  N    A+  L + V
Sbjct: 318 GNIRNALVIW-ARILRNELQPDIISYNITLKGLCSCNRISDAILFLHDAV 366



 Score = 43.9 bits (102), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 69/161 (42%)

Query: 303 MVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGR 362
           ++ + GF  D+  Y  +++ +C +     ++++L+     G   D   Y+ +   L K  
Sbjct: 84  LMAKSGFVEDSKTYGTLVNGFCKNRYINKSLQVLEIAEQKGGVLDAFAYSAMINALCKEA 143

Query: 363 KLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGN 422
           KL +A  + N M+K+    N     A ++  + +     AI+ +  M   H      T N
Sbjct: 144 KLEKAVCVLNGMIKSGCKPNTCVYNALIKGLVGASKLDDAIRVFHEMGTTHSPPDIVTYN 203

Query: 423 LLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQIL 463
           +L+ GL       EA    K M EKG+  +    S L + L
Sbjct: 204 ILINGLFKGDRFGEAYDLVKEMLEKGLDPSVITYSLLMKGL 244


>gi|14532710|gb|AAK64156.1| unknown protein [Arabidopsis thaliana]
          Length = 974

 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 76/310 (24%), Positives = 131/310 (42%), Gaps = 37/310 (11%)

Query: 100 SPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTF 158
           SPY +  VV  +  +   D  ++ +K M       ++  + ++  +++   R  DA+   
Sbjct: 416 SPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVL 475

Query: 159 DVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKE 217
             M++ G   D+F  NSL+  + +  +  +A  FL  +V+  +KP+  TY   + G+ + 
Sbjct: 476 KEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEA 535

Query: 218 RDVANAKKTFGEMVIEVGWDPDNV-------------------PAYDSYL---------- 248
            + A+A K   EM  E G  P+ V                    AY S +          
Sbjct: 536 SEFASADKYVKEMR-ECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKT 594

Query: 249 -ITLLKGC---DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMV 304
              L+ G    D + +     + M  +G  P +  + +         N++ A  I+  MV
Sbjct: 595 YTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMV 654

Query: 305 GRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKL 364
              G  P+  +YNM++  +C S E   A +LLDEM   G  P+  TY  + +   K   L
Sbjct: 655 EE-GLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDL 713

Query: 365 WEASGLFNEM 374
            EA  LF+EM
Sbjct: 714 AEAFRLFDEM 723



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 60/222 (27%), Positives = 93/222 (41%), Gaps = 7/222 (3%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-V 195
           T+ +  S Y+ A     A      M + G   +      L++  C+ GK I+A    R +
Sbjct: 524 TYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSM 583

Query: 196 VDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
           VD  I  D  TY +L+ G  K   V +A++ F EM  + G  PD V +Y   LI      
Sbjct: 584 VDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGK-GIAPD-VFSY-GVLINGFSKL 640

Query: 256 DGIYETVNSLKRMMERGCNPGMTFFKLAFEE-CLTGQNLRGAEFIWGAMVGRIGFRPDTH 314
             + +  +    M+E G  P +  + +     C +G+  +  E +    V   G  P+  
Sbjct: 641 GNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVK--GLHPNAV 698

Query: 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFE 356
            Y  +I  YC S +   A +L DEM   G  PD   Y  L +
Sbjct: 699 TYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVD 740



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 105/428 (24%), Positives = 169/428 (39%), Gaps = 72/428 (16%)

Query: 117 FDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRV---KDAI---------TTFDV--- 160
            D  WD  K M + NV+  + T+  +  ++  A  V   KD +          T +V   
Sbjct: 202 LDLFWDVYKGMVERNVVFDVKTYHMLIIAHCRAGNVQLGKDVLFKTEKEFRTATLNVDGA 261

Query: 161 ---MEQYGCKHDV---FALNSLLSAICRDGKTIDAWQFLRVVDG-RIKPDNDTYAILLEG 213
               E   CK  V   +  + L+  +C+  +  DA   L  +D   +  DN TY++L++G
Sbjct: 262 LKLKESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDG 321

Query: 214 WEKERDVANAKKTFGEMVIE-VGWDPDNVPAYDSYLITLLKGCDGIYETVNSL-KRMMER 271
             K R+   AK    EMV   +   P     YD  +  + K  +G+ E   +L   M+  
Sbjct: 322 LLKGRNADAAKGLVHEMVSHGINIKP---YMYDCCICVMSK--EGVMEKAKALFDGMIAS 376

Query: 272 GCNPGMTFFKLAFEECLTGQNLR-GAEFI--------------WGAMVGRI--------- 307
           G  P    +    E     +N+R G E +              +G +V  +         
Sbjct: 377 GLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGA 436

Query: 308 ----------GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEF 357
                     G RP+  +Y  +I  +  ++  G AM++L EM   G  PDI  YN L   
Sbjct: 437 YNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIG 496

Query: 358 LVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDL 417
           L K +++ EA     EMV+N    N     A +  Y+++ +   A K+ K M E  C  L
Sbjct: 497 LSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRE--CGVL 554

Query: 418 SETGNLLVAGL----CDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYE 473
                +L  GL    C    + EA    + M ++GI       + L   L K  K    E
Sbjct: 555 PN--KVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAE 612

Query: 474 ELLKKCKA 481
           E+ ++ + 
Sbjct: 613 EIFREMRG 620



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 66/284 (23%), Positives = 121/284 (42%), Gaps = 23/284 (8%)

Query: 104 WNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVME 162
           + ++++ L KN   D   +  + M+ + +   + ++  + + +     ++ A + FD M 
Sbjct: 595 YTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMV 654

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVA 221
           + G   +V   N LL   CR G+   A + L  +  + + P+  TY  +++G+ K  D+A
Sbjct: 655 EEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLA 714

Query: 222 NAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMM------ERGCNP 275
            A + F EM ++ G  PD+         TL+ GC      +N ++R +      ++GC  
Sbjct: 715 EAFRLFDEMKLK-GLVPDSF-----VYTTLVDGCC----RLNDVERAITIFGTNKKGCAS 764

Query: 276 GMTFFKLAFEECLT-GQNLRGAEFIWGAMVG---RIGFRPDTHMYNMMISLYCYSNETGA 331
               F          G+     E +   M G   R G +P+   YN+MI   C      A
Sbjct: 765 STAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFG-KPNDVTYNIMIDYLCKEGNLEA 823

Query: 332 AMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
           A +L  +M      P + TY  L     K  +  E   +F+E +
Sbjct: 824 AKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAI 867



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 61/264 (23%), Positives = 99/264 (37%), Gaps = 16/264 (6%)

Query: 202 PDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG------C 255
           P    YA L+EG+ +E++V    +   EM         N+        T++KG       
Sbjct: 380 PQAQAYASLIEGYCREKNVRQGYELLVEM------KKRNIVISPYTYGTVVKGMCSSGDL 433

Query: 256 DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHM 315
           DG Y   N +K M+  GC P +  +    +  L       A  +   M  + G  PD   
Sbjct: 434 DGAY---NIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQ-GIAPDIFC 489

Query: 316 YNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
           YN +I     +     A   L EMV NG  P+  TY       ++  +   A     EM 
Sbjct: 490 YNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMR 549

Query: 376 KNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLP 435
           +   + N   C   +  Y        A   ++ M++      ++T  +L+ GL     + 
Sbjct: 550 ECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVD 609

Query: 436 EAVKYAKGMAEKGIQVTPFALSKL 459
           +A +  + M  KGI    F+   L
Sbjct: 610 DAEEIFREMRGKGIAPDVFSYGVL 633


>gi|222640196|gb|EEE68328.1| hypothetical protein OsJ_26607 [Oryza sativa Japonica Group]
          Length = 461

 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 81/334 (24%), Positives = 146/334 (43%), Gaps = 17/334 (5%)

Query: 61  TLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSP--YAWNLVVDLLGKNCLFD 118
           ++IR     +  V + S   P  AV  F   A   +   +P  + + +++    +    D
Sbjct: 59  SIIRSLNRALAAVARDS---PAAAVSGFNRMARSSDGAVTPTLHTYGILIGCCCRAGRLD 115

Query: 119 AMWDAIKS-MKKENVLSLATFASVFSSYVVADRVKDAIT-TFDVMEQYGCKHDVFALNSL 176
             +  + + +KK   +    F  +  S     R  +A+      M + GC   VF+ N L
Sbjct: 116 LGFAGLGNVIKKGYRVEPIIFTPLLKSLCAEKRTSNAMNIVLRRMTELGCAPHVFSYNIL 175

Query: 177 LSAICRDGKTIDAWQFLRVV---DGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIE 233
           L  +C + ++ +A + L ++    G   PD  +Y+ +++G  KE D   A  T+ EM +E
Sbjct: 176 LKGLCHESRSQEALELLHMMADDGGDCPPDVVSYSTIIDGLFKEGDSDKAYSTYHEM-LE 234

Query: 234 VGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPG-MTFFKLAFEECLTGQN 292
            G  PD V  Y++ +  L K    + + ++ L RM++ G  P  +T+  +    C +GQ+
Sbjct: 235 RGILPD-VVTYNTIVAALCKA-QAMDKAMDVLNRMVKNGVMPDCITYNSIVHGYCSSGQS 292

Query: 293 LRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYN 352
            + A  I   M    G  PD   Y  ++   C +     A K+LD M+  G  P++ TY+
Sbjct: 293 -KEAIGILEKMCSD-GVEPDAVTYTSLMDYLCKNGRCIEARKILDSMIKRGLKPNVITYS 350

Query: 353 ILFEFLVKGRKLWEASGLFNEMVKNENVLNHENC 386
            L         L E   L  ++++NE    +  C
Sbjct: 351 TLLHGYATKGALVEMRDLL-DLMQNEAAKINSGC 383



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 75/302 (24%), Positives = 118/302 (39%), Gaps = 22/302 (7%)

Query: 170 VFALNSLLSAICRDGKTIDAWQFLRVV---DGRIKPDNDTYAILLEGWEKERDVANAKKT 226
           + +LN  L+A+ RD        F R+    DG + P   TY IL+    +   +      
Sbjct: 61  IRSLNRALAAVARDSPAAAVSGFNRMARSSDGAVTPTLHTYGILIGCCCRAGRLDLGFAG 120

Query: 227 FGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNS----LKRMMERGCNPGMTFFKL 282
            G  VI+ G+  + +         LLK       T N+    L+RM E GC P +  + +
Sbjct: 121 LGN-VIKKGYRVEPI-----IFTPLLKSLCAEKRTSNAMNIVLRRMTELGCAPHVFSYNI 174

Query: 283 AFEE-CLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVY 341
             +  C   ++    E +           PD   Y+ +I       ++  A     EM+ 
Sbjct: 175 LLKGLCHESRSQEALELLHMMADDGGDCPPDVVSYSTIIDGLFKEGDSDKAYSTYHEMLE 234

Query: 342 NGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYV 401
            G  PD+ TYN +   L K + + +A  + N MVKN  + +     + V  Y  S     
Sbjct: 235 RGILPDVVTYNTIVAALCKAQAMDKAMDVLNRMVKNGVMPDCITYNSIVHGYCSSGQSKE 294

Query: 402 AIKFWKYMIENHCSDLSE----TGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALS 457
           AI     ++E  CSD  E    T   L+  LC      EA K    M ++G++      S
Sbjct: 295 AIG----ILEKMCSDGVEPDAVTYTSLMDYLCKNGRCIEARKILDSMIKRGLKPNVITYS 350

Query: 458 KL 459
            L
Sbjct: 351 TL 352


>gi|225454300|ref|XP_002275491.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial [Vitis vinifera]
 gi|297745328|emb|CBI40408.3| unnamed protein product [Vitis vinifera]
          Length = 765

 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 74/292 (25%), Positives = 140/292 (47%), Gaps = 14/292 (4%)

Query: 94  QLNDKHSP---YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLA-TFASVFSSYVVAD 149
           Q+N    P      N +VD + K+   +   +    M+ + +   A T+ ++  ++   +
Sbjct: 441 QMNKDGVPPNVVTLNTLVDGMCKHGRINGAVEFFNEMQGKGLKGNAVTYTALIRAFCNVN 500

Query: 150 RVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL--RVVDGRIKPDNDTY 207
            ++ A+  FD M + GC  D     +L+S + + GK +D   F+  ++ +    PD  ++
Sbjct: 501 NIEKAMELFDEMLEAGCSPDAIVYYTLISGLSQAGK-LDRASFVLSKMKEAGFSPDIVSF 559

Query: 208 AILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSL-K 266
            +L+ G+ ++  +  A +   EM    G  PD V  Y++ +    K  D  + T + L K
Sbjct: 560 NVLINGFCRKNKLDEAYEMLKEME-NAGIKPDGV-TYNTLISHFSKTGD--FSTAHRLMK 615

Query: 267 RMMERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCY 325
           +M++ G  P + T+  L    CL G NL  A  I+  M       P+T +YN++I+  C 
Sbjct: 616 KMVKEGLVPTVVTYGALIHAYCLNG-NLDEAMKIFRDMSSTSKVPPNTVIYNILINSLCR 674

Query: 326 SNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKN 377
            N+   A+ L+D+M   G  P+  T+N +F+ L +   L +A  L + M ++
Sbjct: 675 KNQVDLALSLMDDMKVKGVKPNTNTFNAMFKGLQEKNWLSKAFELMDRMTEH 726



 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 105/245 (42%), Gaps = 5/245 (2%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           T+  +   Y  A  ++ A   FD M + G   +V  LN+L+  +C+ G+   A +F   +
Sbjct: 418 TYNCLIDGYCKASMIEAARELFDQMNKDGVPPNVVTLNTLVDGMCKHGRINGAVEFFNEM 477

Query: 197 DGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
            G+ +K +  TY  L+  +    ++  A + F EM +E G  PD +  Y   LI+ L   
Sbjct: 478 QGKGLKGNAVTYTALIRAFCNVNNIEKAMELFDEM-LEAGCSPDAIVYYT--LISGLSQA 534

Query: 256 DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHM 315
             +      L +M E G +P +  F +          L  A  +   M    G +PD   
Sbjct: 535 GKLDRASFVLSKMKEAGFSPDIVSFNVLINGFCRKNKLDEAYEMLKEM-ENAGIKPDGVT 593

Query: 316 YNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
           YN +IS +  + +   A +L+ +MV  G  P + TY  L         L EA  +F +M 
Sbjct: 594 YNTLISHFSKTGDFSTAHRLMKKMVKEGLVPTVVTYGALIHAYCLNGNLDEAMKIFRDMS 653

Query: 376 KNENV 380
               V
Sbjct: 654 STSKV 658



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 92/401 (22%), Positives = 155/401 (38%), Gaps = 70/401 (17%)

Query: 105 NLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVM-- 161
           N ++  LG+   F  M   +  MK+ ++  ++ TF  + +      RV +A+  F+ M  
Sbjct: 309 NALLTALGRAREFKRMNTLLAEMKEMDIQPNVVTFGILINHLCKFRRVDEALEVFEKMNG 368

Query: 162 -EQYG--CKHDVFALNSLLSAICRDGKTIDAWQFLRVVDG--RIKPDNDTYAILLEGWEK 216
            E  G   + DV   N+L+  +C+ G+  +    +  +    R  P+  TY  L++G+ K
Sbjct: 369 GESNGFLVEPDVITYNTLIDGLCKVGRQEEGLGLVERMRSQPRCMPNTVTYNCLIDGYCK 428

Query: 217 ERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG------CDGIYETVNSLK---- 266
              +  A++ F +M      + D VP     L TL+ G       +G  E  N ++    
Sbjct: 429 ASMIEAARELFDQM------NKDGVPPNVVTLNTLVDGMCKHGRINGAVEFFNEMQGKGL 482

Query: 267 ----------------------------RMMERGCNPGMTFFKLAFEECLTGQNLRGAEF 298
                                        M+E GC+P    +            L  A F
Sbjct: 483 KGNAVTYTALIRAFCNVNNIEKAMELFDEMLEAGCSPDAIVYYTLISGLSQAGKLDRASF 542

Query: 299 IWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFL 358
           +   M    GF PD   +N++I+ +C  N+   A ++L EM   G  PD  TYN L    
Sbjct: 543 VLSKM-KEAGFSPDIVSFNVLINGFCRKNKLDEAYEMLKEMENAGIKPDGVTYNTLISHF 601

Query: 359 VKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLS 418
            K      A  L  +MVK   V       A +  Y  + +   A+K ++        D+S
Sbjct: 602 SKTGDFSTAHRLMKKMVKEGLVPTVVTYGALIHAYCLNGNLDEAMKIFR--------DMS 653

Query: 419 ETG---------NLLVAGLCDMHMLPEAVKYAKGMAEKGIQ 450
            T          N+L+  LC  + +  A+     M  KG++
Sbjct: 654 STSKVPPNTVIYNILINSLCRKNQVDLALSLMDDMKVKGVK 694



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 97/401 (24%), Positives = 160/401 (39%), Gaps = 63/401 (15%)

Query: 105 NLVVDLLGKNCLFD---AMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVM 161
           N+++D+L +    D    + D +   K E   +  T   VFS+    D+V  A+   +++
Sbjct: 196 NILIDVLFRKGRVDDALHLLDEMLQPKAEFPPNSNTGHIVFSALSKRDKVGRAVDEEEIV 255

Query: 162 EQYG--CKHDVFA----LNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAI----LL 211
                  +H+VF     L  L+S +CR G+T  AW    V+ G +K      A     LL
Sbjct: 256 GLVSKFAEHEVFPNSIWLTQLISRLCRSGRTDRAWD---VLHGLMKLGGVMEAASCNALL 312

Query: 212 EGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMER 271
               + R+         EM  E+   P NV  +   LI  L     + E +   ++M   
Sbjct: 313 TALGRAREFKRMNTLLAEMK-EMDIQP-NVVTF-GILINHLCKFRRVDEALEVFEKM-NG 368

Query: 272 GCNPG-------MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYC 324
           G + G       +T+  L    C  G+   G   +   M  +    P+T  YN +I  YC
Sbjct: 369 GESNGFLVEPDVITYNTLIDGLCKVGRQEEGLGLVE-RMRSQPRCMPNTVTYNCLIDGYC 427

Query: 325 YSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHE 384
            ++   AA +L D+M  +G  P++ T N L + + K  ++  A   FNEM       N  
Sbjct: 428 KASMIEAARELFDQMNKDGVPPNVVTLNTLVDGMCKHGRINGAVEFFNEMQGKGLKGNAV 487

Query: 385 NCRAAVRVYMDSDDPYVAIKFWKYMIENHCS-----------DLSETG------------ 421
              A +R + + ++   A++ +  M+E  CS            LS+ G            
Sbjct: 488 TYTALIRAFCNVNNIEKAMELFDEMLEAGCSPDAIVYYTLISGLSQAGKLDRASFVLSKM 547

Query: 422 ------------NLLVAGLCDMHMLPEAVKYAKGMAEKGIQ 450
                       N+L+ G C  + L EA +  K M   GI+
Sbjct: 548 KEAGFSPDIVSFNVLINGFCRKNKLDEAYEMLKEMENAGIK 588


>gi|47550658|dbj|BAD20284.1| hypothetical protein [Oryza sativa Indica Group]
          Length = 791

 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 89/382 (23%), Positives = 158/382 (41%), Gaps = 16/382 (4%)

Query: 81  PGPAVKFFRWSAYQLNDKHSP--YAWNLVVDLLGKNCLFDAMWDAIKSMKKENV-LSLAT 137
           P  AV  +   A     K +P  + + +++    +    D  + A+ ++ K+   +   T
Sbjct: 65  PAAAVSRYNRMARAGAGKVTPTVHTYGILIGCCCRAGRLDLGFAALGNVVKKGFRVEAIT 124

Query: 138 FASVFSSYVVADRVKDAI-TTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           F  +        R  DA+      M +  C  DVF+   LL  +C + ++ +A + L ++
Sbjct: 125 FTPLLKGLCADKRTSDAMDIVLRRMTELSCMPDVFSCTILLKGLCDENRSQEALELLHMM 184

Query: 197 ----DGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
                G   PD  +Y  ++ G+ KE D   A  T+ EM ++    PD V  Y S +  L 
Sbjct: 185 ADDRGGGSAPDVVSYTTVINGFFKEGDSDKAYSTYHEM-LDRRISPD-VVTYSSIIAALC 242

Query: 253 KGCDGIYETVNSLKRMMERGCNPG-MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRP 311
           KG   + + +  L  M++ G  P  MT+  +    C + Q      F+    +   G  P
Sbjct: 243 KG-QAMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFL--KKMRSDGVEP 299

Query: 312 DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLF 371
           D   YN ++   C +  +  A K+ D M   G  PDI TY  L +       L E   L 
Sbjct: 300 DVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALL 359

Query: 372 NEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDM 431
           + MV+N    +H      +  Y   +    A+  +  M ++  +    T   ++  LC  
Sbjct: 360 DLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKS 419

Query: 432 HMLPEAVKYAKGMAEKGIQVTP 453
             + +A+ Y + M ++G+  TP
Sbjct: 420 GSVDDAMLYFEQMIDEGL--TP 439



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 96/462 (20%), Positives = 182/462 (39%), Gaps = 94/462 (20%)

Query: 90  WSAYQ--LNDKHSP--YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSS 144
           +S Y   L+ + SP    ++ ++  L K    D   + + +M K  V+ +  T+ S+   
Sbjct: 216 YSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHG 275

Query: 145 YVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR----- 199
           Y  +++ K+AI     M   G + DV   NSL+  +C++G++ +A +    +  R     
Sbjct: 276 YCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPD 335

Query: 200 -------------------------------IKPDNDTYAILLEGWEKERDVANAKKTFG 228
                                          I PD+  + IL+  + K+  V  A   F 
Sbjct: 336 IATYCTLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFS 395

Query: 229 EMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMT---------- 278
           +M  + G +P NV  Y + +I +L     + + +   ++M++ G  P +           
Sbjct: 396 KMR-QHGLNP-NVVTYGA-VIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLC 452

Query: 279 --------------------------FFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD 312
                                     F  +    C  G+ +  +E ++  MV RIG +P+
Sbjct: 453 IFDKWDKAEELILEMLDRGICLNTIFFNSIIHSHCKEGRVIE-SEKLFDLMV-RIGVKPN 510

Query: 313 THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFN 372
              Y+ +I  YC + +   A KLL  M   G  PD  TYN L     +  ++ +A  LF 
Sbjct: 511 VITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFK 570

Query: 373 EMVK---NENVLNHENCRAAV---RVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVA 426
           EMV    + N++ +      +   R    + + YV I      +E        T N+++ 
Sbjct: 571 EMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVGITKSGTQLE------LSTYNIILH 624

Query: 427 GLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARK 468
           GLC  ++  EA++  + +    +Q+     + +   L+K  +
Sbjct: 625 GLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGR 666



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 72/308 (23%), Positives = 124/308 (40%), Gaps = 15/308 (4%)

Query: 152 KDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVD---GRIKPDNDTYA 208
           +DA   FD + + G    ++ LN  L+ + R        ++ R+     G++ P   TY 
Sbjct: 32  EDARHVFDELLRRGRGASIYGLNRALADVARHSPAAAVSRYNRMARAGAGKVTPTVHTYG 91

Query: 209 ILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNS---- 264
           IL+    +   +       G  V++ G+  + +         LLKG      T ++    
Sbjct: 92  ILIGCCCRAGRLDLGFAALGN-VVKKGFRVEAIT-----FTPLLKGLCADKRTSDAMDIV 145

Query: 265 LKRMMERGCNPGMTFFKLAFEE-CLTGQNLRGAEFIWGAMVGRIGFR-PDTHMYNMMISL 322
           L+RM E  C P +    +  +  C   ++    E +      R G   PD   Y  +I+ 
Sbjct: 146 LRRMTELSCMPDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSYTTVING 205

Query: 323 YCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLN 382
           +    ++  A     EM+     PD+ TY+ +   L KG+ + +A  +   MVKN  + N
Sbjct: 206 FFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPN 265

Query: 383 HENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAK 442
                + +  Y  S+ P  AI F K M  +       T N L+  LC      EA K   
Sbjct: 266 CMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFD 325

Query: 443 GMAEKGIQ 450
            M ++G++
Sbjct: 326 SMTKRGLE 333



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 62/286 (21%), Positives = 132/286 (46%), Gaps = 14/286 (4%)

Query: 104 WNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADR-VKDAITTFDVM 161
           +  V+ +L K+   D      + M  E +  ++  + S+  S  + D+  K      +++
Sbjct: 409 YGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEML 468

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDV 220
           ++  C + +F  NS++ + C++G+ I++ + F  +V   +KP+  TY+ L++G+     +
Sbjct: 469 DRGICLNTIF-FNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKM 527

Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSL---KRMMERGCNPGM 277
             A K    M   VG  PD V  Y+    TL+ G   +    ++L   K M+  G +P +
Sbjct: 528 DEATKLLSSM-FSVGMKPDCV-TYN----TLINGYCRVSRMDDALALFKEMVSSGVSPNI 581

Query: 278 TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLD 337
             + +  +     +    A+ ++  +  + G + +   YN+++   C +N T  A+++  
Sbjct: 582 ITYNIILQGLFHTRRTAAAKELYVGIT-KSGTQLELSTYNIILHGLCKNNLTDEALRMFQ 640

Query: 338 EMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNH 383
            +       + +T+NI+   L+K  +  EA  LF     N  V N+
Sbjct: 641 NLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFVAFSSNGLVPNY 686


>gi|225459022|ref|XP_002285611.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like isoform 1 [Vitis vinifera]
          Length = 610

 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 87/315 (27%), Positives = 129/315 (40%), Gaps = 59/315 (18%)

Query: 151 VKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVD--GRIKPDNDTYA 208
           ++D     + M   G   D+    SL+   CR GKT  A   + +++  G + PD  TY 
Sbjct: 130 LEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAV-PDVITYN 188

Query: 209 ILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRM 268
           +L+ G+ K  ++ NA +    M +     PD V  Y++ L TL   CD        LK+ 
Sbjct: 189 VLISGYCKSGEIDNALQVLDRMNVA----PD-VVTYNTILRTL---CDS-----GKLKQA 235

Query: 269 MERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNE 328
           ME          +   +EC                       PD   Y ++I   C  + 
Sbjct: 236 ME-------VLDRQLQKECY----------------------PDVITYTILIEATCKESG 266

Query: 329 TGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK---NENVLNHE- 384
            G AMKLLDEM   G+ PD+ TYN+L   + K  +L EA    N M       NV+ H  
Sbjct: 267 VGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNI 326

Query: 385 --NCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAK 442
                 +   +MD++      K    M+   CS    T N+L+  LC   +L  A+   +
Sbjct: 327 ILRSMCSTGRWMDAE------KLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILE 380

Query: 443 GMAEKGIQVTPFALS 457
            M   G   TP +LS
Sbjct: 381 KMPMHG--CTPNSLS 393



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 89/370 (24%), Positives = 151/370 (40%), Gaps = 24/370 (6%)

Query: 110 LLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKH 168
           L+   C    + +A++ + + NV   + T+ ++  +   + ++K A+   D   Q  C  
Sbjct: 190 LISGYCKSGEIDNALQVLDRMNVAPDVVTYNTILRTLCDSGKLKQAMEVLDRQLQKECYP 249

Query: 169 DVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTF 227
           DV     L+ A C++     A + L  +  +  KPD  TY +L+ G  KE  +  A K  
Sbjct: 250 DVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFL 309

Query: 228 GEMVIEVGWDPDNVPAYDSYLITLLKGCDGI--YETVNSLKRMMERGCNPGMTFFKLAFE 285
             M    G  P+ +    ++ I L   C      +    L  M+ +GC+P +  F +   
Sbjct: 310 NNMP-SYGCQPNVI----THNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILIN 364

Query: 286 ECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAF 345
             L  Q L G        +   G  P++  YN ++  +C   +   A++ LD MV  G +
Sbjct: 365 -FLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCY 423

Query: 346 PDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYV---- 401
           PDI TYN L   L K  K+  A  + N+       L+ + C   +  Y    D       
Sbjct: 424 PDIVTYNTLLTALCKDGKVDVAVEILNQ-------LSSKGCSPVLITYNTVIDGLSKVGK 476

Query: 402 ---AIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSK 458
              AIK    M          T + LV+GL     + EA+K+   +   GI+      + 
Sbjct: 477 TERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNS 536

Query: 459 LKQILIKARK 468
           +   L K+R+
Sbjct: 537 IMLGLCKSRQ 546



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 86/356 (24%), Positives = 139/356 (39%), Gaps = 41/356 (11%)

Query: 139 ASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL----- 193
            S+   +    + K A    +++EQ G   DV   N L+S  C+ G+  +A Q L     
Sbjct: 153 TSLIRGFCRIGKTKKATWVMEILEQSGAVPDVITYNVLISGYCKSGEIDNALQVLDRMNV 212

Query: 194 ------------------------RVVDGRIK----PDNDTYAILLEGWEKERDVANAKK 225
                                    V+D +++    PD  TY IL+E   KE  V  A K
Sbjct: 213 APDVVTYNTILRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMK 272

Query: 226 TFGEMVIEVGWDPDNVPAYDSYLITLLKGCDG-IYETVNSLKRMMERGCNPGMTFFKLAF 284
              EM    G  PD V  Y+  +  + K  +G + E +  L  M   GC P +    +  
Sbjct: 273 LLDEMR-NKGSKPD-VVTYNVLINGICK--EGRLDEAIKFLNNMPSYGCQPNVITHNIIL 328

Query: 285 EE-CLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNG 343
              C TG+ +  AE +   M+ R G  P    +N++I+  C     G A+ +L++M  +G
Sbjct: 329 RSMCSTGRWM-DAEKLLSDML-RKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHG 386

Query: 344 AFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAI 403
             P+  +YN L     K +K+  A    + MV      +       +          VA+
Sbjct: 387 CTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAV 446

Query: 404 KFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKL 459
           +    +    CS +  T N ++ GL  +     A+K    M  KG++      S L
Sbjct: 447 EILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSL 502



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 67/277 (24%), Positives = 109/277 (39%), Gaps = 41/277 (14%)

Query: 100 SPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTF 158
           S   +N++++ L +  L     D ++ M       +  ++  +   +    ++  AI   
Sbjct: 355 SVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYL 414

Query: 159 DVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKE 217
           D+M   GC  D+   N+LL+A+C+DGK   A + L  +  +   P   TY  +++G  K 
Sbjct: 415 DIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKV 474

Query: 218 RDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGM 277
                A K   EM  + G  PD +  Y S               V+ L R  E   +  +
Sbjct: 475 GKTERAIKLLDEMRRK-GLKPD-IITYSSL--------------VSGLSR--EGKVDEAI 516

Query: 278 TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLD 337
            FF           +L G           +G RP+   YN ++   C S +T  A+  L 
Sbjct: 517 KFF----------HDLEG-----------LGIRPNAITYNSIMLGLCKSRQTDRAIDFLA 555

Query: 338 EMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
            M+     P   TY IL E +       EA  L NE+
Sbjct: 556 YMISKRCKPTEATYTILIEGIAYEGLAKEALDLLNEL 592


>gi|297800058|ref|XP_002867913.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297313749|gb|EFH44172.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 724

 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 92/354 (25%), Positives = 153/354 (43%), Gaps = 21/354 (5%)

Query: 106 LVVDLLGKNCLFD-AMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQY 164
           L++  L +N L + A+W   K +      +L  F S+         +K A    + M + 
Sbjct: 280 LILSALCENGLVNRAIWYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRN 339

Query: 165 GCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRI-KPDNDTYAILLEGWEKERDVAN 222
           G K +V+   +L+  +C+ G T  A++ FL++V   I KP+  TY  ++ G+ KE  +  
Sbjct: 340 GWKPNVYTHTALIDGLCKRGWTEKAFRLFLKLVRSDIYKPNVHTYTSMIGGYCKEDKLNR 399

Query: 223 AKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG-C-----DGIYETVNSLKRMMERGCNPG 276
           A+  F  M  E G  P NV  Y     TL+ G C     D  YE +N    M + G  P 
Sbjct: 400 AEMLFSRMK-EQGLFP-NVNTY----TTLINGHCKAGNFDRAYELMN---LMDDEGFRPN 450

Query: 277 MTFFKLAFEE-CLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKL 335
           +  +    +  C   +     E +  A     G   D   Y ++I   C  ++   A+  
Sbjct: 451 IYTYNAVIDSLCKKSRAPEAYELLNKAF--SCGLEADGVTYTILIQEQCKQSDIKQALAF 508

Query: 336 LDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMD 395
              M   G   D++  NIL     + +K+ E+  LF  +V    V   E   + +  Y  
Sbjct: 509 FCRMNKTGFEADMRLNNILIAAFCRQKKMKESERLFQLVVSLGLVPTKETYTSMISGYCK 568

Query: 396 SDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
             D  +A+K++  M  + C   S T   L++GLC   M+ EA K  + M ++G+
Sbjct: 569 EGDFDLALKYFHNMKRHGCVPDSFTYGSLISGLCKKSMVDEACKLYEAMIDRGL 622


>gi|255584056|ref|XP_002532772.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527482|gb|EEF29611.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 647

 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 109/503 (21%), Positives = 190/503 (37%), Gaps = 63/503 (12%)

Query: 8   RHHDDPSPDPHNKRKRSTFASHLDVPNLPPTIKTLCEIIANTPSPTVEDVLDKTLIRVSQ 67
           R H D  P P   +  +         N+   + T C +                LI++S 
Sbjct: 67  RTHQDLKPSPWVNQILALLDGS---SNMESNLDTFCHMF---------------LIKLSP 108

Query: 68  ETVEQVLKFS--YSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIK 125
             V  +L+ +   + P  A++FF W+  Q    H+   +  ++D+L  N + D++     
Sbjct: 109 SFVSFILRSTELQTKPDVAIRFFTWAGKQKKYTHNLECYVSLIDVLATNGVLDSVKSVFS 168

Query: 126 SMK----------------------------------KENVL--SLATFASVFSSYVVAD 149
             K                                  KEN +  SL ++  + +  V + 
Sbjct: 169 KFKEMGLIMTVYSSNSLIKSFGNLGMVEEVLWVWRRMKENGIEPSLFSYNFLVNGLVNSK 228

Query: 150 RVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYA 208
            ++ A   F+VME      DV   N+++   C  GKT  A++ L+ ++ R + PD  TY 
Sbjct: 229 FIESAERVFEVMENGKIGPDVVTYNTMIKGYCEVGKTRKAFEKLKAMELRNVAPDKITYM 288

Query: 209 ILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGI-YETVNSLKR 267
            L++    E D  +    + EM  E G +   +P +   L+      DG   E     + 
Sbjct: 289 TLIQACYAEGDFDSCLGLYHEM-DEKGLE---IPPHVYSLVIGGLCKDGKRVEGYTVFEN 344

Query: 268 MMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSN 327
           M+ +GC   +  +    +      N+  A  ++  M  + G  PD   Y ++++  C S 
Sbjct: 345 MISKGCKANVAIYTALIDSNAKCGNMGEAMLLFKRM-KKEGLEPDEVTYGVIVNSLCKSG 403

Query: 328 ETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCR 387
               A++ ++     G   +   Y+ L + L K  ++ EA  +F EMVK     +     
Sbjct: 404 RLDEALEYMEFCSGKGVAVNAMFYSSLIDGLGKSGRVDEAERIFYEMVKKGCPPDSYCYN 463

Query: 388 AAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEK 447
           A +           A+   K M  + C     T  +L+ GL   H   EA+     M +K
Sbjct: 464 ALIDALAKCGKIDEALALSKRMEVDGCDQTVYTYTILITGLFREHRNEEALTLWDLMIDK 523

Query: 448 GIQVTPFALSKLKQILIKARKEA 470
           GI  T  A   L   L  + K A
Sbjct: 524 GITPTAAAFRALSTGLCLSGKVA 546



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 64/277 (23%), Positives = 127/277 (45%), Gaps = 7/277 (2%)

Query: 101 PYAWNLVVDLLGKNCLFDAMWDAIKSM-KKENVLSLATFASVFSSYVVADRVKDAITTFD 159
           P+ ++LV+  L K+      +   ++M  K    ++A + ++  S      + +A+  F 
Sbjct: 319 PHVYSLVIGGLCKDGKRVEGYTVFENMISKGCKANVAIYTALIDSNAKCGNMGEAMLLFK 378

Query: 160 VMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKER 218
            M++ G + D      +++++C+ G+  +A +++    G+ +  +   Y+ L++G  K  
Sbjct: 379 RMKKEGLEPDEVTYGVIVNSLCKSGRLDEALEYMEFCSGKGVAVNAMFYSSLIDGLGKSG 438

Query: 219 DVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMT 278
            V  A++ F EMV + G  PD+   Y++ LI  L  C  I E +   KRM   GC+  + 
Sbjct: 439 RVDEAERIFYEMV-KKGCPPDSY-CYNA-LIDALAKCGKIDEALALSKRMEVDGCDQTVY 495

Query: 279 FFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDE 338
            + +             A  +W  M+ + G  P    +  + +  C S +   A K+LDE
Sbjct: 496 TYTILITGLFREHRNEEALTLWDLMIDK-GITPTAAAFRALSTGLCLSGKVARACKILDE 554

Query: 339 MVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
           M   G  P+   ++ +   L K  ++ EA  L + +V
Sbjct: 555 MAPMGVIPE-TAFDDMINILCKAGRIKEACKLADGIV 590


>gi|224103707|ref|XP_002313163.1| predicted protein [Populus trichocarpa]
 gi|222849571|gb|EEE87118.1| predicted protein [Populus trichocarpa]
          Length = 643

 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 76/273 (27%), Positives = 126/273 (46%), Gaps = 15/273 (5%)

Query: 102 YAWNLVVDLLGKNCLFD---AMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTF 158
           Y +N ++    +  L++   A+++ +KSM    V    T+ ++   Y  + R+K+AI   
Sbjct: 105 YTYNTLITCCRRGSLYEEAAAVFEDMKSMG--FVPDKVTYNTLLDVYGKSRRIKEAIEVL 162

Query: 159 DVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKE 217
             ME  GC   +   NSL+SA  RDG   +A +   ++V+  IK D  TY  +L G+ + 
Sbjct: 163 REMEVNGCSPSIVTYNSLISAYARDGLLEEAMELKNQMVERGIKLDVFTYTAMLSGFVRT 222

Query: 218 RDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGM 277
               +A + F EM    G  P N+  +++ LI +        E +   + +    C P +
Sbjct: 223 GKDESAMRVFEEMRT-AGCKP-NICTFNA-LIKMHGNRGKFAEMMKVFEEIKICCCVPDI 279

Query: 278 TFFKLAFEECLTGQNLRGAEFIWGAM--VGRIGFRPDTHMYNMMISLYCYSNETGAAMKL 335
             +       + GQN   +E + G    + R+GF P+   YN +IS Y        AM +
Sbjct: 280 VTWNTLL--AVFGQNGMDSE-VSGVFKEMKRVGFVPERDTYNTLISAYSRCGSFDQAMAM 336

Query: 336 LDEMVYNGAFPDIQTYNILFEFLVKGRKLWEAS 368
              M+  G  PD+ TYN +   L +G  LWE S
Sbjct: 337 YKRMLDTGITPDLSTYNAVLAALARG-GLWEQS 368



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 78/347 (22%), Positives = 147/347 (42%), Gaps = 8/347 (2%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKEN-VLSLATFASVFSSYVVADRVKDAITTFDVM 161
            WN ++ + G+N +   +    K MK+   V    T+ ++ S+Y        A+  +  M
Sbjct: 281 TWNTLLAVFGQNGMDSEVSGVFKEMKRVGFVPERDTYNTLISAYSRCGSFDQAMAMYKRM 340

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERDV 220
              G   D+   N++L+A+ R G    + + L  + DG  KP+  T+  LL  +   +++
Sbjct: 341 LDTGITPDLSTYNAVLAALARGGLWEQSEKILAEMQDGMCKPNELTHCSLLHAYANGKEI 400

Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFF 280
                   E +     +P  V      L+ +   CD + E   +   +  +G +P ++  
Sbjct: 401 GRML-ALAEEICSGVIEPHAVLL--KTLVLVNSKCDLLLEAERAFLELKRKGFSPDLSTL 457

Query: 281 KLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMV 340
                     Q +     I   M    GF P    YN ++ ++  S     + ++L E++
Sbjct: 458 NAMIAIYGRRQMVTKTNEILNFM-KESGFTPSLATYNSLMYMHSQSENFERSEEVLKEIL 516

Query: 341 YNGAFPDIQTYN-ILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDP 399
             G  PDI +YN ++F +   GR + EAS +F+EM ++  + +       V  Y      
Sbjct: 517 AKGIKPDIISYNTVIFAYCRNGR-MKEASHIFSEMRESGLIPDVITYNTFVASYAADSMF 575

Query: 400 YVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAE 446
             AI    YMI++ C     T N ++ G C ++   +A+K+   + E
Sbjct: 576 EEAIDVVCYMIKHGCKPNQNTYNSVIDGYCKLNRRDDAIKFISSLHE 622



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 79/363 (21%), Positives = 145/363 (39%), Gaps = 46/363 (12%)

Query: 106 LVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVMEQY 164
           +++++LGK          + ++ K+     +  + S+ ++ V   R ++A+  F  ME+ 
Sbjct: 3   VIINMLGKEGKVSVAASLLNNLHKDGFEPDVYAYTSLITACVSNGRYREAVMVFKKMEEE 62

Query: 165 GCKHDVFALNSLLSAICRDGKTIDAWQ-----FLRVVDGRIKPDNDTYAILLEGWEKERD 219
           GCK  +   N +L+     GK    W      F  + +  I PD  TY  L+    +   
Sbjct: 63  GCKPTLITYNVILNVY---GKMGMPWNKITGLFEGMKNAGILPDEYTYNTLITCCRRGSL 119

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTF 279
              A   F +M   +G+ PD V  Y++ L+ +      I E +  L+ M   GC+P +  
Sbjct: 120 YEEAAAVFEDMK-SMGFVPDKV-TYNT-LLDVYGKSRRIKEAIEVLREMEVNGCSPSIVT 176

Query: 280 FKLA---------FEECLTGQNL---RGAE---FIWGAMVG------------RI----- 307
           +             EE +  +N    RG +   F + AM+             R+     
Sbjct: 177 YNSLISAYARDGLLEEAMELKNQMVERGIKLDVFTYTAMLSGFVRTGKDESAMRVFEEMR 236

Query: 308 --GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLW 365
             G +P+   +N +I ++    +    MK+ +E+      PDI T+N L     +     
Sbjct: 237 TAGCKPNICTFNALIKMHGNRGKFAEMMKVFEEIKICCCVPDIVTWNTLLAVFGQNGMDS 296

Query: 366 EASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLV 425
           E SG+F EM +   V   +     +  Y        A+  +K M++   +    T N ++
Sbjct: 297 EVSGVFKEMKRVGFVPERDTYNTLISAYSRCGSFDQAMAMYKRMLDTGITPDLSTYNAVL 356

Query: 426 AGL 428
           A L
Sbjct: 357 AAL 359



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 53/220 (24%), Positives = 93/220 (42%), Gaps = 14/220 (6%)

Query: 265 LKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYC 324
           L  + + G  P +  +      C++    R A  ++  M    G +P    YN+++++Y 
Sbjct: 21  LNNLHKDGFEPDVYAYTSLITACVSNGRYREAVMVFKKMEEE-GCKPTLITYNVILNVYG 79

Query: 325 -----YSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNEN 379
                ++  TG    L + M   G  PD  TYN L     +G    EA+ +F +M     
Sbjct: 80  KMGMPWNKITG----LFEGMKNAGILPDEYTYNTLITCCRRGSLYEEAAAVFEDMKSMGF 135

Query: 380 VLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVK 439
           V +       + VY  S     AI+  + M  N CS    T N L++      +L EA++
Sbjct: 136 VPDKVTYNTLLDVYGKSRRIKEAIEVLREMEVNGCSPSIVTYNSLISAYARDGLLEEAME 195

Query: 440 YAKGMAEKGIQVTPFALSKLKQILIKARKEA----VYEEL 475
               M E+GI++  F  + +    ++  K+     V+EE+
Sbjct: 196 LKNQMVERGIKLDVFTYTAMLSGFVRTGKDESAMRVFEEM 235


>gi|255564599|ref|XP_002523294.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223537382|gb|EEF39010.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 544

 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 94/414 (22%), Positives = 170/414 (41%), Gaps = 77/414 (18%)

Query: 84  AVKFFRWSA-YQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASV 141
           A++ F ++  YQ N  H+   ++ ++  L +  +F  +   +  + K  +      F +V
Sbjct: 77  ALQIFEYAGKYQPNFSHNYDTYDSIIHKLSRARVFGPVELLLSDLHKSQIKCGENIFINV 136

Query: 142 FSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-- 199
             +Y +A +   A+ TF  ++ +  +  V +LN+LL+A  ++ +        +    +  
Sbjct: 137 IRNYGLAGKPDFALRTFIRIQDFNVQRSVRSLNTLLNAFVQNKRYDLVHAMFKNCRSKYG 196

Query: 200 IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIY 259
           + P+  T  IL++   K+ DV +A K   EM   +G  P NV  Y     T+L G     
Sbjct: 197 VLPNVFTCNILIKALCKKNDVESAVKVLDEMP-AMGMIP-NVVTY----TTILGGYSSRG 250

Query: 260 ETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMM 319
           + VN+ K                                ++G +  R G+ PD   Y ++
Sbjct: 251 DMVNANK--------------------------------VFGELFDR-GWLPDATTYTIL 277

Query: 320 ISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNEN 379
           ++ YC       A+KL+D+M  NG  P+  TY ++ E   K +K  EA  L ++M++ + 
Sbjct: 278 MNGYCEQGRLADAIKLMDDMGENGVEPNEVTYGVMVEAYCKEKKAGEARNLLDDMLERQY 337

Query: 380 VLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSD-----------LSETG------- 421
           V +   C   + V  ++     A + WK M++ +C             L + G       
Sbjct: 338 VPSSALCCKVIDVLCEAGKIEEACELWKRMLKKNCMPDNAIMSTLIHWLCKEGKVWEARK 397

Query: 422 ----------------NLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKL 459
                           N L+AG+C+   L EA K    M EKG +   F  + L
Sbjct: 398 LFGEFERGAIPSLLTYNTLIAGMCEKGELSEAGKLWDDMMEKGYKPNAFTYNML 451



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 75/321 (23%), Positives = 136/321 (42%), Gaps = 23/321 (7%)

Query: 134 SLATFASVFSSYVVADRVKDAITTF-DVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQF 192
           S+ +  ++ +++V   R       F +   +YG   +VF  N L+ A+C+     D    
Sbjct: 164 SVRSLNTLLNAFVQNKRYDLVHAMFKNCRSKYGVLPNVFTCNILIKALCKKN---DVESA 220

Query: 193 LRVVD-----GRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSY 247
           ++V+D     G I P+  TY  +L G+    D+ NA K FGE+  + GW PD      +Y
Sbjct: 221 VKVLDEMPAMGMI-PNVVTYTTILGGYSSRGDMVNANKVFGEL-FDRGWLPDAT----TY 274

Query: 248 LITLLKGCDG--IYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVG 305
            I +   C+   + + +  +  M E G  P    + +  E     +    A  +   M+ 
Sbjct: 275 TILMNGYCEQGRLADAIKLMDDMGENGVEPNEVTYGVMVEAYCKEKKAGEARNLLDDMLE 334

Query: 306 RIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLW 365
           R  + P + +   +I + C + +   A +L   M+     PD    + L  +L K  K+W
Sbjct: 335 R-QYVPSSALCCKVIDVLCEAGKIEEACELWKRMLKKNCMPDNAIMSTLIHWLCKEGKVW 393

Query: 366 EASGLFNEMVKNE--NVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNL 423
           EA  LF E  +    ++L +    A +    +  +   A K W  M+E      + T N+
Sbjct: 394 EARKLFGEFERGAIPSLLTYNTLIAGM---CEKGELSEAGKLWDDMMEKGYKPNAFTYNM 450

Query: 424 LVAGLCDMHMLPEAVKYAKGM 444
           L+ G   +    E ++  + M
Sbjct: 451 LIKGFSKIGNAKEGIRILEEM 471



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 79/339 (23%), Positives = 138/339 (40%), Gaps = 17/339 (5%)

Query: 121 WDAIKSMKKENVLSLATFASVFSSYVV------ADRVKDAITTFDVMEQYGCKHDVFALN 174
           +D + +M K          +VF+  ++       + V+ A+   D M   G   +V    
Sbjct: 181 YDLVHAMFKNCRSKYGVLPNVFTCNILIKALCKKNDVESAVKVLDEMPAMGMIPNVVTYT 240

Query: 175 SLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIE 233
           ++L      G  ++A + F  + D    PD  TY IL+ G+ ++  +A+A K   +M  E
Sbjct: 241 TILGGYSSRGDMVNANKVFGELFDRGWLPDATTYTILMNGYCEQGRLADAIKLMDDMG-E 299

Query: 234 VGWDPDNVPAYDSYLITLLKGCD--GIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQ 291
            G +P+ V    +Y + +   C      E  N L  M+ER   P         +      
Sbjct: 300 NGVEPNEV----TYGVMVEAYCKEKKAGEARNLLDDMLERQYVPSSALCCKVIDVLCEAG 355

Query: 292 NLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTY 351
            +  A  +W  M+ +    PD  + + +I   C   +   A KL  E    GA P + TY
Sbjct: 356 KIEEACELWKRMLKK-NCMPDNAIMSTLIHWLCKEGKVWEARKLFGEF-ERGAIPSLLTY 413

Query: 352 NILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIE 411
           N L   + +  +L EA  L+++M++     N       ++ +    +    I+  + M++
Sbjct: 414 NTLIAGMCEKGELSEAGKLWDDMMEKGYKPNAFTYNMLIKGFSKIGNAKEGIRILEEMLD 473

Query: 412 NHCSDLSETGNLLVAGLCDMHMLPEAVKYAK-GMAEKGI 449
           N C     T  +L+  LC M M  E  K     MA  G+
Sbjct: 474 NRCMPNKSTYAILIEELCKMGMEGEVDKVVSMAMASGGV 512



 Score = 42.4 bits (98), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 42/177 (23%), Positives = 72/177 (40%), Gaps = 4/177 (2%)

Query: 306 RIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLW 365
           + G  P+    N++I   C  N+  +A+K+LDEM   G  P++ TY  +         + 
Sbjct: 194 KYGVLPNVFTCNILIKALCKKNDVESAVKVLDEMPAMGMIPNVVTYTTILGGYSSRGDMV 253

Query: 366 EASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLV 425
            A+ +F E+     + +       +  Y +      AIK    M EN       T  ++V
Sbjct: 254 NANKVFGELFDRGWLPDATTYTILMNGYCEQGRLADAIKLMDDMGENGVEPNEVTYGVMV 313

Query: 426 AGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARK--EA--VYEELLKK 478
              C      EA      M E+    +     K+  +L +A K  EA  +++ +LKK
Sbjct: 314 EAYCKEKKAGEARNLLDDMLERQYVPSSALCCKVIDVLCEAGKIEEACELWKRMLKK 370


>gi|357130030|ref|XP_003566661.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 827

 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 71/296 (23%), Positives = 140/296 (47%), Gaps = 11/296 (3%)

Query: 93  YQLNDKHSP--YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVF-SSYVVAD 149
           Y     H P   ++++++        F  M +   SM  + ++S     ++  S++    
Sbjct: 362 YMTTKGHMPDIVSYSILLHGYATEGRFADMNNLFHSMADKGIVSNCHCINILISAHAKRG 421

Query: 150 RVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYA 208
            + +A+  F  M+  G + +V   ++L+SA CR G+  DA + F +++   I+P+   Y 
Sbjct: 422 MMDEAMLVFTEMQGQGVRPNVVTYSTLISAFCRMGRLADAMEKFSQMISIGIEPNTAVYH 481

Query: 209 ILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITL-LKGCDGIYETVNSLKR 267
            L+ G+    D+  AK+   EM+ + G    N+  + S + +L ++G   + +  +    
Sbjct: 482 SLIHGFCMHGDLVKAKEFISEMMSK-GLHRPNIVFFSSIIHSLCIEG--RVMDAQDVFNL 538

Query: 268 MMERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYS 326
           ++  G  P + TF  L    CL G+ +  A  +  AMV  +G  PD    N ++S YC S
Sbjct: 539 VIHIGDRPTIVTFNSLIDGYCLVGK-MEKAFGVLDAMVS-VGIEPDVVTNNTLVSGYCKS 596

Query: 327 NETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLN 382
            +    + L  EM++    P   TYNI+ + L++  +   A  +F+EM+ +   ++
Sbjct: 597 GKIDDGLILFREMLHKKVKPTTVTYNIVLDGLLRAGRTSAAKKMFHEMIDSGTAVD 652



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 73/299 (24%), Positives = 133/299 (44%), Gaps = 19/299 (6%)

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKT---IDAWQFLRVVDGRIKPDNDTYAILLEGWEKE 217
           M +  C  D  + N+++ ++C D ++   +D  Q +    GR  PD  ++  ++ G+ K+
Sbjct: 186 MSELSCVPDAISYNTVIKSLCGDSRSQEALDMVQRMAKEGGRCSPDVVSFNTVIHGFFKQ 245

Query: 218 RDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNP-G 276
            +V+ A   F EMV + G  PD V  Y+S +  L K    + +    L++M+++G  P G
Sbjct: 246 GEVSKACNLFNEMV-QKGVVPD-VGTYNSIVDALCKA-RAMDKAEFVLRQMVDKGVEPDG 302

Query: 277 MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLL 336
           +T+  +      +G     A+ ++  M  + G  PDT  ++  +S  C    +  A ++ 
Sbjct: 303 VTYNAIIHGYSCSGHWKESAK-MFRKMTSK-GLIPDTVTFSSFMSSLCKHGRSKDAEEIF 360

Query: 337 DEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM-----VKNENVLNHENCRAAVR 391
             M   G  PDI +Y+IL        +  + + LF+ M     V N + +N      A R
Sbjct: 361 QYMTTKGHMPDIVSYSILLHGYATEGRFADMNNLFHSMADKGIVSNCHCINILISAHAKR 420

Query: 392 VYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQ 450
             MD      A+  +  M          T + L++  C M  L +A++    M   GI+
Sbjct: 421 GMMDE-----AMLVFTEMQGQGVRPNVVTYSTLISAFCRMGRLADAMEKFSQMISIGIE 474



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 65/279 (23%), Positives = 122/279 (43%), Gaps = 12/279 (4%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVLS---LATFASVFSSYVVADRVKDAITTFD 159
           ++N V+  L  +       D ++ M KE       + +F +V   +     V  A   F+
Sbjct: 197 SYNTVIKSLCGDSRSQEALDMVQRMAKEGGRCSPDVVSFNTVIHGFFKQGEVSKACNLFN 256

Query: 160 VMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL--RVVDGRIKPDNDTYAILLEGWEKE 217
            M Q G   DV   NS++ A+C+  + +D  +F+  ++VD  ++PD  TY  ++ G+   
Sbjct: 257 EMVQKGVVPDVGTYNSIVDALCK-ARAMDKAEFVLRQMVDKGVEPDGVTYNAIIHGYSCS 315

Query: 218 RDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLK-GCDGIYETVNSLKRMMERGCNPG 276
                + K F +M  + G  PD V  + S++ +L K G     E +   + M  +G  P 
Sbjct: 316 GHWKESAKMFRKMTSK-GLIPDTV-TFSSFMSSLCKHGRSKDAEEI--FQYMTTKGHMPD 371

Query: 277 MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLL 336
           +  + +      T         ++ +M  + G   + H  N++IS +        AM + 
Sbjct: 372 IVSYSILLHGYATEGRFADMNNLFHSMADK-GIVSNCHCINILISAHAKRGMMDEAMLVF 430

Query: 337 DEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
            EM   G  P++ TY+ L     +  +L +A   F++M+
Sbjct: 431 TEMQGQGVRPNVVTYSTLISAFCRMGRLADAMEKFSQMI 469



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 84/371 (22%), Positives = 145/371 (39%), Gaps = 43/371 (11%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFA------------------------ 172
           TF+S  SS     R KDA   F  M   G   D+ +                        
Sbjct: 339 TFSSFMSSLCKHGRSKDAEEIFQYMTTKGHMPDIVSYSILLHGYATEGRFADMNNLFHSM 398

Query: 173 -----------LNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDV 220
                      +N L+SA  + G   +A      + G+ ++P+  TY+ L+  + +   +
Sbjct: 399 ADKGIVSNCHCINILISAHAKRGMMDEAMLVFTEMQGQGVRPNVVTYSTLISAFCRMGRL 458

Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCN-PGMTF 279
           A+A + F +M I +G +P N   Y S +       D + +    +  MM +G + P + F
Sbjct: 459 ADAMEKFSQM-ISIGIEP-NTAVYHSLIHGFCMHGD-LVKAKEFISEMMSKGLHRPNIVF 515

Query: 280 F-KLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDE 338
           F  +    C+ G+ +   +     +V  IG RP    +N +I  YC   +   A  +LD 
Sbjct: 516 FSSIIHSLCIEGRVMDAQDVF--NLVIHIGDRPTIVTFNSLIDGYCLVGKMEKAFGVLDA 573

Query: 339 MVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDD 398
           MV  G  PD+ T N L     K  K+ +   LF EM+  +           +   + +  
Sbjct: 574 MVSVGIEPDVVTNNTLVSGYCKSGKIDDGLILFREMLHKKVKPTTVTYNIVLDGLLRAGR 633

Query: 399 PYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSK 458
              A K +  MI++  +   +T  +L+ GLC   +  EA+     +     +     L+ 
Sbjct: 634 TSAAKKMFHEMIDSGTAVDIDTYKILLKGLCRNDLTDEAITLFHKLGAMDCKFDITILNT 693

Query: 459 LKQILIKARKE 469
           +   L K R+ 
Sbjct: 694 MINALYKVRRR 704



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 63/246 (25%), Positives = 101/246 (41%), Gaps = 42/246 (17%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           ++ TF S+   Y +  +++ A    D M   G + DV   N+L+S  C+ GK  D     
Sbjct: 547 TIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTNNTLVSGYCKSGKIDDGLILF 606

Query: 194 R-VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
           R ++  ++KP   TY I+L+G  +    + AKK F EM+     D       D+Y I LL
Sbjct: 607 REMLHKKVKPTTVTYNIVLDGLLRAGRTSAAKKMFHEMI-----DSGTAVDIDTYKI-LL 660

Query: 253 KGCDGIYETVNSLKRMMERGCNPGMTFF-KLAFEECLTGQNLRGAEFIWGAMVGRIGFRP 311
           KG        N L        +  +T F KL   +C                      + 
Sbjct: 661 KGL-----CRNDLT-------DEAITLFHKLGAMDC----------------------KF 686

Query: 312 DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLF 371
           D  + N MI+          A  L   +  +G  P++ TY ++   L+K   + EA  +F
Sbjct: 687 DITILNTMINALYKVRRREEANDLFAAISTSGLVPNVSTYGVMIRNLLKEGSVEEADTMF 746

Query: 372 NEMVKN 377
           + M K+
Sbjct: 747 SSMEKS 752



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 82/389 (21%), Positives = 158/389 (40%), Gaps = 33/389 (8%)

Query: 104 WNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVME 162
           +N +VD L K    D     ++ M  + V     T+ ++   Y  +   K++   F  M 
Sbjct: 270 YNSIVDALCKARAMDKAEFVLRQMVDKGVEPDGVTYNAIIHGYSCSGHWKESAKMFRKMT 329

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIK-PDNDTYAILLEGWEKERDVA 221
             G   D    +S +S++C+ G++ DA +  + +  +   PD  +Y+ILL G+  E   A
Sbjct: 330 SKGLIPDTVTFSSFMSSLCKHGRSKDAEEIFQYMTTKGHMPDIVSYSILLHGYATEGRFA 389

Query: 222 NAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDG----IYETVNSLKRMMERGCNPGM 277
           +    F  M        D     + + I +L         + E +     M  +G  P +
Sbjct: 390 DMNNLFHSMA-------DKGIVSNCHCINILISAHAKRGMMDEAMLVFTEMQGQGVRPNV 442

Query: 278 -TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLL 336
            T+  L    C  G+ L  A   +  M+  IG  P+T +Y+ +I  +C   +   A + +
Sbjct: 443 VTYSTLISAFCRMGR-LADAMEKFSQMIS-IGIEPNTAVYHSLIHGFCMHGDLVKAKEFI 500

Query: 337 DEMVYNGAF-PDIQTYN-ILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYM 394
            EM+  G   P+I  ++ I+    ++GR + +A  +FN ++       H   R  +  + 
Sbjct: 501 SEMMSKGLHRPNIVFFSSIIHSLCIEGR-VMDAQDVFNLVI-------HIGDRPTIVTFN 552

Query: 395 DSDDPYV-------AIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEK 447
              D Y        A      M+         T N LV+G C    + + +   + M  K
Sbjct: 553 SLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTNNTLVSGYCKSGKIDDGLILFREMLHK 612

Query: 448 GIQVTPFALSKLKQILIKARKEAVYEELL 476
            ++ T    + +   L++A + +  +++ 
Sbjct: 613 KVKPTTVTYNIVLDGLLRAGRTSAAKKMF 641



 Score = 48.1 bits (113), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 60/241 (24%), Positives = 95/241 (39%), Gaps = 24/241 (9%)

Query: 153 DAITTFDVMEQYGCKHDVFALNSLLSAI--------CRDGKTIDAWQFLRV----VDGRI 200
           DA   FD + + G      +LN  L+A+        C +G  +    F R+       R+
Sbjct: 60  DAHHLFDELLRQGTPVHNRSLNDFLAALARAPDSVSCSNGPALVLALFNRICREEAGPRV 119

Query: 201 KPDN-DTYAILLEGWEKER--DVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDG 257
            P    TY IL++   + R  D+  A   F   ++  G     + A  +  +  L     
Sbjct: 120 APLTVRTYGILMDCCCRARRPDLGPA---FVARLLRAGLKTGTIQA--TTFLKCLCHAKR 174

Query: 258 IYETVNSL-KRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFR--PDTH 314
             E V+ L  RM E  C P    +    +  L G +           + + G R  PD  
Sbjct: 175 TDEAVDVLLHRMSELSCVPDAISYNTVIKS-LCGDSRSQEALDMVQRMAKEGGRCSPDVV 233

Query: 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
            +N +I  +    E   A  L +EMV  G  PD+ TYN + + L K R + +A  +  +M
Sbjct: 234 SFNTVIHGFFKQGEVSKACNLFNEMVQKGVVPDVGTYNSIVDALCKARAMDKAEFVLRQM 293

Query: 375 V 375
           V
Sbjct: 294 V 294


>gi|357498921|ref|XP_003619749.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494764|gb|AES75967.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 680

 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 80/368 (21%), Positives = 161/368 (43%), Gaps = 14/368 (3%)

Query: 117 FDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSL 176
           F  +   +K   + + ++L TF      + +  ++  A+   D +   G   D  +  +L
Sbjct: 125 FSVLAKILKMGYEPDTITLNTF---IKGFCLKGQIHQALNFHDKLVALGFHLDQVSYGTL 181

Query: 177 LSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVG 235
           ++ +C+ G+T  A + LR VDG+ ++ D   Y+ +++   K+++V +A   + EMV    
Sbjct: 182 INGLCKVGETRAALELLRRVDGKLVQLDVVMYSTIIDSMCKDKNVNDAFDLYSEMVSR-- 239

Query: 236 WDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEE-CLTGQNLR 294
               N+  Y S LI+       + + +    +M     NP +  F +  +  C  G+   
Sbjct: 240 RISSNIVTY-SALISGFCIVGKLKDAIGLFNKMTSENINPDVYTFNILVDAFCKEGRVKE 298

Query: 295 GAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNIL 354
               +  AM+ + G +PD   YN ++  YC  NE   A  +L+ M + G    +++YNI+
Sbjct: 299 AKNGL--AMMMKQGIKPDIVTYNSLMDGYCLVNEVNMAKSILNTMSHRGVTATVRSYNIV 356

Query: 355 FEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHC 414
                K + + +A  LF EM   +   N     + +     S     A++    M +   
Sbjct: 357 INGFCKIKMVDQAMKLFKEMHHKQIFPNVITYNSLIDGLCKSGRISYALELIDLMHDRGQ 416

Query: 415 SDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARK----EA 470
                T + ++  LC  H++ +A+     + ++GI+   +  + L   L K  +      
Sbjct: 417 QPDIITYSSILDALCKNHLVDKAIALLIKLKDQGIRPNMYTYTILIDGLCKGGRLEDARN 476

Query: 471 VYEELLKK 478
           ++E+LL K
Sbjct: 477 IFEDLLVK 484



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 77/356 (21%), Positives = 145/356 (40%), Gaps = 19/356 (5%)

Query: 29  HLDVPNLPPTIKTLCEIIANTPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFF 88
            LDV      I ++C+         V D  D     VS+     ++ +S    G  +   
Sbjct: 207 QLDVVMYSTIIDSMCK------DKNVNDAFDLYSEMVSRRISSNIVTYSALISGFCIVGK 260

Query: 89  RWSAYQLNDKHSP-------YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFAS 140
              A  L +K +        Y +N++VD   K        + +  M K+ +   + T+ S
Sbjct: 261 LKDAIGLFNKMTSENINPDVYTFNILVDAFCKEGRVKEAKNGLAMMMKQGIKPDIVTYNS 320

Query: 141 VFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR- 199
           +   Y + + V  A +  + M   G    V + N +++  C+      A +  + +  + 
Sbjct: 321 LMDGYCLVNEVNMAKSILNTMSHRGVTATVRSYNIVINGFCKIKMVDQAMKLFKEMHHKQ 380

Query: 200 IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIY 259
           I P+  TY  L++G  K   ++ A +   +++ + G  PD +  Y S L  L K    + 
Sbjct: 381 IFPNVITYNSLIDGLCKSGRISYALELI-DLMHDRGQQPD-IITYSSILDALCKN-HLVD 437

Query: 260 ETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMM 319
           + +  L ++ ++G  P M  + +  +    G  L  A  I+  ++ + G+    + Y +M
Sbjct: 438 KAIALLIKLKDQGIRPNMYTYTILIDGLCKGGRLEDARNIFEDLLVK-GYNLTVNTYTVM 496

Query: 320 ISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
           I  +C       A+ LL +M  N   PD  TY I+   L    +  +A  L  EM+
Sbjct: 497 IQGFCSHGLFDEALSLLSKMKDNSCIPDAITYEIIICSLFDKDENDKAEKLLREMI 552



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 59/269 (21%), Positives = 108/269 (40%), Gaps = 30/269 (11%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVM 161
            ++ ++D L KN L D     +  +K + +  ++ T+  +        R++DA   F+ +
Sbjct: 422 TYSSILDALCKNHLVDKAIALLIKLKDQGIRPNMYTYTILIDGLCKGGRLEDARNIFEDL 481

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERDV 220
              G    V     ++   C  G   +A   L ++ D    PD  TY I++     + + 
Sbjct: 482 LVKGYNLTVNTYTVMIQGFCSHGLFDEALSLLSKMKDNSCIPDAITYEIIICSLFDKDEN 541

Query: 221 ANAKKTFGEMV--------IEVG-WDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMER 271
             A+K   EM+        +E G W    + A   +L      C    E+ N  K ++ER
Sbjct: 542 DKAEKLLREMITRGLLYSFLEYGSWSLSFMAAPAHFLNNDSLQCTSSQESGNWAKLLLER 601

Query: 272 GCNPGMTFFKLAFEEC-LTGQNLRGAEFIWGAMV-------GRIGFRPDTHMYNMMISLY 323
                       + +C LT  N+R  +    +++        + G+  D + Y +MI  +
Sbjct: 602 -----------IYCDCVLTKSNMRDKDVECPSVIIYSTCDWSKQGYILDVNTYTVMIQGF 650

Query: 324 CYSNETGAAMKLLDEMVYNGAFPDIQTYN 352
           C       ++ LL +M  NG  PD  TY+
Sbjct: 651 CSHGLFDESLALLSKMEVNGCIPDAVTYD 679


>gi|297809467|ref|XP_002872617.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318454|gb|EFH48876.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 584

 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 80/327 (24%), Positives = 138/327 (42%), Gaps = 45/327 (13%)

Query: 87  FFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSY 145
           FF    + L    + + + +++  L KN +    ++  + M++  V  +L T+  V +  
Sbjct: 221 FFEMGKFGL--VANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPNLHTYNCVMNQL 278

Query: 146 VVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL------------ 193
               R KDA   FD M + G   ++   N+L+  +CR+ K  +A + +            
Sbjct: 279 CKDGRTKDAFKVFDEMRERGVSCNIVTYNTLIGGLCREMKANEANEVMDQMKSDGINPNL 338

Query: 194 ----RVVDG--------------------RIKPDNDTYAILLEGWEKERDVANAKKTFGE 229
                ++DG                     + P   TY IL+ G+ K+ D + A K   E
Sbjct: 339 ITYNTLIDGFCGVRKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKVVKE 398

Query: 230 MVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGM-TFFKLAFEECL 288
           M  E G  P  V    + LI      D + + +     M E G  P + T+  L    C+
Sbjct: 399 ME-ERGIKPSKVTY--TILIDTFARSDNMEKAIQLRSSMEELGLTPDVHTYSVLIHGFCI 455

Query: 289 TGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDI 348
            G+ +  A  ++ +MV +  F P+  +YN M+  YC    +  A++L  EM      P++
Sbjct: 456 KGR-MNEASRLFKSMVEK-KFEPNEVIYNTMVLGYCKEGSSYRALRLFREMEEKELPPNV 513

Query: 349 QTYNILFEFLVKGRKLWEASGLFNEMV 375
            +Y  + E L K RK  EA GL  +M+
Sbjct: 514 ASYRYMIEVLCKERKSKEAEGLVEKMI 540



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 73/303 (24%), Positives = 134/303 (44%), Gaps = 13/303 (4%)

Query: 152 KDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAIL 210
           K     ++ M+++G   ++   N +++ +C+DG+T DA++    +  R +  +  TY  L
Sbjct: 250 KQGFEMYEKMQEHGVFPNLHTYNCVMNQLCKDGRTKDAFKVFDEMRERGVSCNIVTYNTL 309

Query: 211 LEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSL---KR 267
           + G  +E     A +   +M  + G +P N+  Y+    TL+ G  G+ +   +L   + 
Sbjct: 310 IGGLCREMKANEANEVMDQMKSD-GINP-NLITYN----TLIDGFCGVRKLGKALSLCRD 363

Query: 268 MMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSN 327
           +  RG +P +  + +         +  GA  +   M  R G +P    Y ++I  +  S+
Sbjct: 364 LKSRGLSPSLVTYNILVSGFCKKGDTSGAGKVVKEMEER-GIKPSKVTYTILIDTFARSD 422

Query: 328 ETGAAMKLLDEMVYNGAFPDIQTYNILFE-FLVKGRKLWEASGLFNEMVKNENVLNHENC 386
               A++L   M   G  PD+ TY++L   F +KGR + EAS LF  MV+ +   N    
Sbjct: 423 NMEKAIQLRSSMEELGLTPDVHTYSVLIHGFCIKGR-MNEASRLFKSMVEKKFEPNEVIY 481

Query: 387 RAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAE 446
              V  Y      Y A++ ++ M E        +   ++  LC      EA    + M +
Sbjct: 482 NTMVLGYCKEGSSYRALRLFREMEEKELPPNVASYRYMIEVLCKERKSKEAEGLVEKMID 541

Query: 447 KGI 449
            GI
Sbjct: 542 SGI 544



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 76/327 (23%), Positives = 131/327 (40%), Gaps = 32/327 (9%)

Query: 138 FASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVD 197
           +  + ++YV +  +  +I  F+ M   G        N+LL+ +         W F     
Sbjct: 97  YEVIINAYVQSQSLDSSIYYFNEMVDKGFVPGSNCFNNLLTFVVGSSSFNQWWCFFNESK 156

Query: 198 GRIKPDNDTYAILLEGWEKERDVANAKKTFGEMV--IEVGWDPDNVPAYDSYLITLLKGC 255
            ++  D  ++ I+++G  +  ++   +K+F  +V   E G+ P NV  Y     TL+ GC
Sbjct: 157 IKVVLDVYSFGIVIKGCCEAGEI---EKSFDLLVELREFGFSP-NVVIY----TTLIDGC 208

Query: 256 DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTG---QNLRGAEFIWGAMVGRIGFRPD 312
               E   +     E G   G+   +  +   + G     ++   F     +   G  P+
Sbjct: 209 CKKGEIEKAKDLFFEMG-KFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPN 267

Query: 313 THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFN 372
            H YN +++  C    T  A K+ DEM   G   +I TYN L   L +  K  EA+ + +
Sbjct: 268 LHTYNCVMNQLCKDGRTKDAFKVFDEMRERGVSCNIVTYNTLIGGLCREMKANEANEVMD 327

Query: 373 EMVKNENVLNHENCRAAVRVYMDSDDPYVAI-KFWKYMIENHCSDLSETG--------NL 423
           +M         +     +  Y    D +  + K  K +  + C DL   G        N+
Sbjct: 328 QM-------KSDGINPNLITYNTLIDGFCGVRKLGKAL--SLCRDLKSRGLSPSLVTYNI 378

Query: 424 LVAGLCDMHMLPEAVKYAKGMAEKGIQ 450
           LV+G C       A K  K M E+GI+
Sbjct: 379 LVSGFCKKGDTSGAGKVVKEMEERGIK 405


>gi|357167837|ref|XP_003581356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Brachypodium distachyon]
          Length = 524

 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 86/334 (25%), Positives = 140/334 (41%), Gaps = 32/334 (9%)

Query: 138 FASVFSSYVVADRVKDAITTFDVMEQYGCKH----------------DVFALNSLLSAIC 181
           FA +F       R+  + TTF++M ++ C                  +    N++++  C
Sbjct: 104 FADIFRL-----RLPLSTTTFNIMLRHLCTAGKPVRALELLRQMPSPNAVTYNTVIAGFC 158

Query: 182 RDGKTIDAWQFLRVVD--GRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPD 239
             G+     + +R +   G I PD  TYA ++ GW K   V +A K F EM+ E   +P+
Sbjct: 159 ARGRVQAGIEIMREMRERGGIAPDKYTYATVISGWCKVGKVEDATKVFDEMLTEGKVEPN 218

Query: 240 NVPAYDSYLITLLKG-CD-GIYETVNSLK-RMMERGCNPGMTFFKLAFEECLTGQNLRGA 296
            V  Y++    L+ G CD G  E     +  M++RG +  +  + L F   L  +     
Sbjct: 219 AV-MYNA----LIGGYCDQGNLEVALRYRGEMVDRGVSMTVATYNL-FVHTLFMEGRAAE 272

Query: 297 EFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFE 356
                  +G  G  PD   YN++I+ YC   +   AMK+ + MV  G    + TY  L  
Sbjct: 273 AHALVEEMGEKGLAPDAFTYNILINGYCKEGKEKKAMKMFEVMVGKGIRATVVTYTSLIH 332

Query: 357 FLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSD 416
            L     + E   LFN+ V+     +     A +  +    D   A +    M +   + 
Sbjct: 333 ALSMKGMVQETDRLFNDAVRRGIRPDLFMYNALINSHCTGGDMDRAFEIMGEMEKKRITP 392

Query: 417 LSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQ 450
              T N L+ GLC +  L EA    + M ++GIQ
Sbjct: 393 DDVTYNTLMRGLCLLGRLDEARGLIEEMTKRGIQ 426



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 93/407 (22%), Positives = 163/407 (40%), Gaps = 46/407 (11%)

Query: 81  PGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFAS 140
           P PA   F    ++L    S   +N+++  L   C       A++ +++    +  T+ +
Sbjct: 97  PAPAFVLF-ADIFRLRLPLSTTTFNIMLRHL---CTAGKPVRALELLRQMPSPNAVTYNT 152

Query: 141 VFSSYVVADRVKDAITTFDVM-EQYGCKHDVFALNSLLSAICRDGKTIDAWQFL--RVVD 197
           V + +    RV+  I     M E+ G   D +   +++S  C+ GK  DA +     + +
Sbjct: 153 VIAGFCARGRVQAGIEIMREMRERGGIAPDKYTYATVISGWCKVGKVEDATKVFDEMLTE 212

Query: 198 GRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDG 257
           G+++P+   Y  L+ G+  + ++  A +  GEMV + G     V  Y+ ++ TL    +G
Sbjct: 213 GKVEPNAVMYNALIGGYCDQGNLEVALRYRGEMV-DRGVSM-TVATYNLFVHTLF--MEG 268

Query: 258 IYETVNSL-KRMMERG---------------CNPGMTFFKLAFEECLTGQNLRGAEFIWG 301
                ++L + M E+G               C  G     +   E + G+ +R     + 
Sbjct: 269 RAAEAHALVEEMGEKGLAPDAFTYNILINGYCKEGKEKKAMKMFEVMVGKGIRATVVTYT 328

Query: 302 AMVG-------------------RIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYN 342
           +++                    R G RPD  MYN +I+ +C   +   A +++ EM   
Sbjct: 329 SLIHALSMKGMVQETDRLFNDAVRRGIRPDLFMYNALINSHCTGGDMDRAFEIMGEMEKK 388

Query: 343 GAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVA 402
              PD  TYN L   L    +L EA GL  EM K     +  +    +  Y    D   A
Sbjct: 389 RITPDDVTYNTLMRGLCLLGRLDEARGLIEEMTKRGIQPDLVSYNTLISGYSMKGDIKDA 448

Query: 403 IKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
           +K    M+    +    T N ++ GLC      +A    K M   GI
Sbjct: 449 VKVRDEMMGKGFNPTLLTYNAMIKGLCLNGQGGDAEDLVKEMVGNGI 495



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 65/230 (28%), Positives = 104/230 (45%), Gaps = 17/230 (7%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRV 195
           T+  + + Y    + K A+  F+VM   G +  V    SL+ A+   G   +  + F   
Sbjct: 291 TYNILINGYCKEGKEKKAMKMFEVMVGKGIRATVVTYTSLIHALSMKGMVQETDRLFNDA 350

Query: 196 VDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYL--ITLLK 253
           V   I+PD   Y  L+       D+  A +  GEM  +    PD+V  Y++ +  + LL 
Sbjct: 351 VRRGIRPDLFMYNALINSHCTGGDMDRAFEIMGEME-KKRITPDDV-TYNTLMRGLCLLG 408

Query: 254 GCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRG----AEFIWGAMVGRIGF 309
             D   E    ++ M +RG  P +    +++   ++G +++G    A  +   M+G+ GF
Sbjct: 409 RLD---EARGLIEEMTKRGIQPDL----VSYNTLISGYSMKGDIKDAVKVRDEMMGK-GF 460

Query: 310 RPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLV 359
            P    YN MI   C + + G A  L+ EMV NG  PD  TY  L E L 
Sbjct: 461 NPTLLTYNAMIKGLCLNGQGGDAEDLVKEMVGNGITPDDSTYISLIEGLT 510



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 53/110 (48%), Gaps = 5/110 (4%)

Query: 110 LLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKH 168
           LLG+    D     I+ M K  +   L ++ ++ S Y +   +KDA+   D M   G   
Sbjct: 406 LLGR---LDEARGLIEEMTKRGIQPDLVSYNTLISGYSMKGDIKDAVKVRDEMMGKGFNP 462

Query: 169 DVFALNSLLSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYAILLEGWEKE 217
            +   N+++  +C +G+  DA   ++ +V   I PD+ TY  L+EG   E
Sbjct: 463 TLLTYNAMIKGLCLNGQGGDAEDLVKEMVGNGITPDDSTYISLIEGLTTE 512



 Score = 42.4 bits (98), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 50/223 (22%), Positives = 85/223 (38%), Gaps = 43/223 (19%)

Query: 278 TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLD 337
           TF  +    C  G+ +R  E +      R    P+   YN +I+ +C      A ++++ 
Sbjct: 118 TFNIMLRHLCTAGKPVRALELL------RQMPSPNAVTYNTVIAGFCARGRVQAGIEIMR 171

Query: 338 EMVYNGAF-PDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENV-LNHENCRAAVRVYMD 395
           EM   G   PD  TY  +     K  K+ +A+ +F+EM+    V  N     A +  Y D
Sbjct: 172 EMRERGGIAPDKYTYATVISGWCKVGKVEDATKVFDEMLTEGKVEPNAVMYNALIGGYCD 231

Query: 396 SDDPYVAIKFWKYMIENHCS---------------------------DLSETG------- 421
             +  VA+++   M++   S                           ++ E G       
Sbjct: 232 QGNLEVALRYRGEMVDRGVSMTVATYNLFVHTLFMEGRAAEAHALVEEMGEKGLAPDAFT 291

Query: 422 -NLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQIL 463
            N+L+ G C      +A+K  + M  KGI+ T    + L   L
Sbjct: 292 YNILINGYCKEGKEKKAMKMFEVMVGKGIRATVVTYTSLIHAL 334


>gi|224092332|ref|XP_002309562.1| predicted protein [Populus trichocarpa]
 gi|222855538|gb|EEE93085.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 77/324 (23%), Positives = 140/324 (43%), Gaps = 19/324 (5%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRD---GKTIDAW 190
           ++ T+ ++ +          A   F  ME+ GC+ +V   N L+ ++C+D    + +D +
Sbjct: 199 TVYTYTTIINGLCKIGETTAAAGLFKKMEEAGCQPNVVTYNILIDSLCKDKLVNEALDIF 258

Query: 191 QFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLIT 250
            +++    RI PD  TY  L++G    R    A     EM   +   P N+  ++  +  
Sbjct: 259 SYMKA--KRISPDIFTYNSLIQGLCNFRRWKEASALLNEMT-SLNIMP-NIFTFNVLVDA 314

Query: 251 LLKGCDG-IYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLR----GAEFIWGAMVG 305
           + K  +G + E     K M E G  P +    + +   + G +LR     A  ++ AM+ 
Sbjct: 315 ICK--EGKVSEAQGVFKTMTEMGVEPDV----VTYSSLMYGYSLRMEIVEARKLFDAMIT 368

Query: 306 RIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLW 365
           + G +PD   YN++I  YC +     A +L +EM++ G  PD   YN L   L +  +L 
Sbjct: 369 K-GCKPDAFSYNILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNTLIHGLCQLGRLR 427

Query: 366 EASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLV 425
           EA  LF  M  N N+ +       +  +        A + ++ M   +        N+L+
Sbjct: 428 EAQDLFKNMHSNGNLPDLFTYSMLLDGFCKEGYLGKAFRLFRVMQSTYLKPDIAMYNILI 487

Query: 426 AGLCDMHMLPEAVKYAKGMAEKGI 449
             +C    L +A K    +  +G+
Sbjct: 488 DAMCKFGNLKDARKLFSELFVQGL 511



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 77/309 (24%), Positives = 124/309 (40%), Gaps = 41/309 (13%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVM 161
            +N+++D L K+ L +   D    MK + +   + T+ S+        R K+A    + M
Sbjct: 237 TYNILIDSLCKDKLVNEALDIFSYMKAKRISPDIFTYNSLIQGLCNFRRWKEASALLNEM 296

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR--------------------------V 195
                  ++F  N L+ AIC++GK  +A    +                          +
Sbjct: 297 TSLNIMPNIFTFNVLVDAICKEGKVSEAQGVFKTMTEMGVEPDVVTYSSLMYGYSLRMEI 356

Query: 196 VDGR----------IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYD 245
           V+ R           KPD  +Y IL++G+ K + +  AK+ F EM I  G  PDNV  Y+
Sbjct: 357 VEARKLFDAMITKGCKPDAFSYNILIKGYCKAKRIDEAKQLFNEM-IHQGLTPDNVN-YN 414

Query: 246 SYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVG 305
           + LI  L     + E  +  K M   G  P +  + +  +     +   G  F    ++ 
Sbjct: 415 T-LIHGLCQLGRLREAQDLFKNMHSNGNLPDLFTYSMLLDG-FCKEGYLGKAFRLFRVMQ 472

Query: 306 RIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLW 365
               +PD  MYN++I   C       A KL  E+   G  P++Q Y  +   L K   L 
Sbjct: 473 STYLKPDIAMYNILIDAMCKFGNLKDARKLFSELFVQGLLPNVQIYTTIINNLCKEGLLD 532

Query: 366 EASGLFNEM 374
           EA   F  M
Sbjct: 533 EALEAFRNM 541



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 75/296 (25%), Positives = 126/296 (42%), Gaps = 14/296 (4%)

Query: 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLA-TFASVFSSYVVADRVKDAITTFDV 160
           Y  ++++D        D  +     M K  +   A TF ++ +      +   A+  FD 
Sbjct: 131 YTLSILIDCFSHLQRVDLAFSVFSKMIKLGLQPDAVTFNTLINGLCKVGKFAQAVEFFDD 190

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERD 219
            E  GC+  V+   ++++ +C+ G+T  A   F ++ +   +P+  TY IL++   K++ 
Sbjct: 191 FEASGCQPTVYTYTTIINGLCKIGETTAAAGLFKKMEEAGCQPNVVTYNILIDSLCKDKL 250

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTF 279
           V  A   F  M  +    PD +  Y+S LI  L       E    L  M      P +  
Sbjct: 251 VNEALDIFSYMKAK-RISPD-IFTYNS-LIQGLCNFRRWKEASALLNEMTSLNIMPNIFT 307

Query: 280 FKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEM 339
           F +  +       +  A+ ++  M   +G  PD   Y+ ++  Y    E   A KL D M
Sbjct: 308 FNVLVDAICKEGKVSEAQGVFKTMT-EMGVEPDVVTYSSLMYGYSLRMEIVEARKLFDAM 366

Query: 340 VYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK--------NENVLNHENCR 387
           +  G  PD  +YNIL +   K +++ EA  LFNEM+         N N L H  C+
Sbjct: 367 ITKGCKPDAFSYNILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNTLIHGLCQ 422



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 83/346 (23%), Positives = 136/346 (39%), Gaps = 64/346 (18%)

Query: 151 VKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL--RVVDGRIKPDNDTYA 208
           + DA+ +F+ M        +     LLSAI + G+   A   L  ++    + PD  T +
Sbjct: 75  IDDALASFNHMLHREPLPCIIQFTKLLSAIVKMGQYYGAVISLSKQMELAGLSPDIYTLS 134

Query: 209 ILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRM 268
           IL++ +   + V  A   F +M I++G  PD V                           
Sbjct: 135 ILIDCFSHLQRVDLAFSVFSKM-IKLGLQPDAV--------------------------- 166

Query: 269 MERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNE 328
                    TF  L    C  G+  +  EF         G +P  + Y  +I+  C   E
Sbjct: 167 ---------TFNTLINGLCKVGKFAQAVEFFDDFEAS--GCQPTVYTYTTIINGLCKIGE 215

Query: 329 TGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRA 388
           T AA  L  +M   G  P++ TYNIL + L K + + EA  +F+ M         +    
Sbjct: 216 TTAAAGLFKKMEEAGCQPNVVTYNILIDSLCKDKLVNEALDIFSYM-------KAKRISP 268

Query: 389 AVRVYMDSDDPYVAIKFWK--YMIENHCSDLSE-----TGNLLVAGLCDMHMLPEAVKYA 441
            +  Y          + WK    + N  + L+      T N+LV  +C    + EA    
Sbjct: 269 DIFTYNSLIQGLCNFRRWKEASALLNEMTSLNIMPNIFTFNVLVDAICKEGKVSEAQGVF 328

Query: 442 KGMAEKGIQ---VTPFALS---KLKQILIKARKEAVYEELLKK-CK 480
           K M E G++   VT  +L     L+  +++ARK  +++ ++ K CK
Sbjct: 329 KTMTEMGVEPDVVTYSSLMYGYSLRMEIVEARK--LFDAMITKGCK 372



 Score = 48.1 bits (113), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 62/283 (21%), Positives = 110/283 (38%), Gaps = 43/283 (15%)

Query: 95  LNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKD 153
           LN   + + +N++VD + K           K+M +  V   + T++S+   Y +   + +
Sbjct: 299 LNIMPNIFTFNVLVDAICKEGKVSEAQGVFKTMTEMGVEPDVVTYSSLMYGYSLRMEIVE 358

Query: 154 AITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLE 212
           A   FD M   GCK D F+ N L+   C+  +  +A Q F  ++   + PDN  Y  L+ 
Sbjct: 359 ARKLFDAMITKGCKPDAFSYNILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNTLIH 418

Query: 213 GWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC-DGIYETVNSLKRMMER 271
           G  +   +  A+  F  M         N+P   +Y + L   C +G       L R+M+ 
Sbjct: 419 GLCQLGRLREAQDLFKNM-----HSNGNLPDLFTYSMLLDGFCKEGYLGKAFRLFRVMQS 473

Query: 272 G-CNPGMTFFKLAFEECLTGQNLRGAE------FIWG---------AMVGRI-------- 307
               P +  + +  +      NL+ A       F+ G          ++  +        
Sbjct: 474 TYLKPDIAMYNILIDAMCKFGNLKDARKLFSELFVQGLLPNVQIYTTIINNLCKEGLLDE 533

Query: 308 ---GFR--------PDTHMYNMMISLYCYSNETGAAMKLLDEM 339
               FR        PD   YN++I  +    +   A +L+ EM
Sbjct: 534 ALEAFRNMEGDGCPPDEFSYNVIIRGFLQYKDESRAAQLIGEM 576


>gi|168004269|ref|XP_001754834.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162693938|gb|EDQ80288.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 504

 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 76/275 (27%), Positives = 121/275 (44%), Gaps = 10/275 (3%)

Query: 104 WNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVME 162
           +N  +++LGK+       D  + M+K+ +L ++ TF  + + Y  A     A   F  M 
Sbjct: 165 YNTYLEVLGKSGRLSQAEDTFRDMQKQGILPAVNTFTIMINIYGKAYYSDKADDLFRSMR 224

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDVA 221
           +  C  +++   +L++A  R+G  + A + F  +      PD  TY  LLE + +     
Sbjct: 225 KALCPPNLYTYTALMNAHAREGNCVRAEEIFAELQSVGFIPDVYTYNALLEAYSRGEHPT 284

Query: 222 NAKKTFGEMVIEVGWDPDNVPAYDSYLITL-LKGCDGIYETVNSL-KRMMERGCNPGMTF 279
            AK+ F  MV E G  PD V    SY I +   G  G+     ++   M E G  P M  
Sbjct: 285 GAKEVFQAMV-EAGVRPDQV----SYNILIDAFGRAGLTADAQAVYDSMKEAGFKPTMKS 339

Query: 280 FKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEM 339
             L          +  AE +    +   G +PDT M+N ++S Y  S        LL+ M
Sbjct: 340 HMLLLSSYAKAGKVTEAERLVRE-IENSGVKPDTFMFNSLLSAYGNSGRIDEMESLLESM 398

Query: 340 VYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
           V + A PDI T N L     +G  + +A  +FN +
Sbjct: 399 VSSVAKPDISTLNTLINAYAQGGYIEKAEEVFNSL 433



 Score = 45.8 bits (107), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 57/290 (19%), Positives = 123/290 (42%), Gaps = 21/290 (7%)

Query: 100 SPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFD 159
           SP A  L+ +++ +    D +WD + ++ +     + T+ ++  +     R+++  +   
Sbjct: 14  SPTAAVLMRNVIAQKSHQD-VWDVLDALPR----GIGTWEAIMENVAELRRLRNWRSVIL 68

Query: 160 VME----QYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV-DGRIKPDNDTYAILLEGW 214
           ++E        K DV   N L+ A  +  +  +A +   ++ D +  P   ++ +LL  +
Sbjct: 69  ILEWILQGTMFKPDVGCFNMLIDAYGKSKQWREAEKTFHLMKDFQCLPTETSFNVLLAAY 128

Query: 215 EKERDVANAKKTFGEMVIEVGWDPDNV--------PAYDSYLITLLKGCDGIYETVNSLK 266
            +   +  A+K F EM  E  + P  V          Y++YL  L K    + +  ++ +
Sbjct: 129 SRGVQLEKAEKLFHEMK-ESNYSPGTVEWMIFSGIATYNTYLEVLGKSGR-LSQAEDTFR 186

Query: 267 RMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYS 326
            M ++G  P +  F +             A+ ++ +M   +   P+ + Y  +++ +   
Sbjct: 187 DMQKQGILPAVNTFTIMINIYGKAYYSDKADDLFRSMRKAL-CPPNLYTYTALMNAHARE 245

Query: 327 NETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK 376
                A ++  E+   G  PD+ TYN L E   +G     A  +F  MV+
Sbjct: 246 GNCVRAEEIFAELQSVGFIPDVYTYNALLEAYSRGEHPTGAKEVFQAMVE 295


>gi|147833323|emb|CAN61988.1| hypothetical protein VITISV_026694 [Vitis vinifera]
          Length = 553

 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 87/317 (27%), Positives = 129/317 (40%), Gaps = 63/317 (19%)

Query: 151 VKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVD--GRIKPDNDTYA 208
           ++D     + M   G   D+    SL+   CR GKT  A   + +++  G + PD  TY 
Sbjct: 73  LEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAV-PDVITYN 131

Query: 209 ILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRM 268
           +L+ G+ K  ++ NA +    M +     PD V  Y++ L TL   CD        LK+ 
Sbjct: 132 VLISGYCKSGEIDNALQVLDRMNVA----PD-VVTYNTILRTL---CDS-----GKLKQA 178

Query: 269 MERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNE 328
           ME          +   +EC                       PD   Y ++I   C  + 
Sbjct: 179 ME-------VLDRQLQKECY----------------------PDVITYTILIEATCKESG 209

Query: 329 TGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM--------VKNENV 380
            G AMKLLDEM   G+ PD+ TYN+L   + K  +L EA    N M        V   N+
Sbjct: 210 VGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNI 269

Query: 381 LNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKY 440
           +    C      +MD++      K    M+   CS    T N+L+  LC   +L  A+  
Sbjct: 270 ILRSMCSTG--RWMDAE------KLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDI 321

Query: 441 AKGMAEKGIQVTPFALS 457
            + M   G   TP +LS
Sbjct: 322 LEKMPMHG--CTPNSLS 336



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 89/370 (24%), Positives = 151/370 (40%), Gaps = 24/370 (6%)

Query: 110 LLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKH 168
           L+   C    + +A++ + + NV   + T+ ++  +   + ++K A+   D   Q  C  
Sbjct: 133 LISGYCKSGEIDNALQVLDRMNVAPDVVTYNTILRTLCDSGKLKQAMEVLDRQLQKECYP 192

Query: 169 DVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTF 227
           DV     L+ A C++     A + L  +  +  KPD  TY +L+ G  KE  +  A K  
Sbjct: 193 DVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFL 252

Query: 228 GEMVIEVGWDPDNVPAYDSYLITLLKGCDGI--YETVNSLKRMMERGCNPGMTFFKLAFE 285
             M    G  P+ +    ++ I L   C      +    L  M+ +GC+P +  F +   
Sbjct: 253 NNMP-SYGCQPNVI----THNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILIN 307

Query: 286 ECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAF 345
             L  Q L G        +   G  P++  YN ++  +C   +   A++ LD MV  G +
Sbjct: 308 F-LCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCY 366

Query: 346 PDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYV---- 401
           PDI TYN L   L K  K+  A  + N+       L+ + C   +  Y    D       
Sbjct: 367 PDIVTYNTLLTALCKDGKVDVAVEILNQ-------LSSKGCSPVLITYNTVIDGLSKVGK 419

Query: 402 ---AIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSK 458
              AIK    M          T + LV+GL     + EA+K+   +   GI+      + 
Sbjct: 420 TERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNS 479

Query: 459 LKQILIKARK 468
           +   L K+R+
Sbjct: 480 IMLGLCKSRQ 489



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 86/356 (24%), Positives = 139/356 (39%), Gaps = 41/356 (11%)

Query: 139 ASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL----- 193
            S+   +    + K A    +++EQ G   DV   N L+S  C+ G+  +A Q L     
Sbjct: 96  TSLIRGFCRIGKTKKATWVMEILEQSGAVPDVITYNVLISGYCKSGEIDNALQVLDRMNV 155

Query: 194 ------------------------RVVDGRIK----PDNDTYAILLEGWEKERDVANAKK 225
                                    V+D +++    PD  TY IL+E   KE  V  A K
Sbjct: 156 APDVVTYNTILRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMK 215

Query: 226 TFGEMVIEVGWDPDNVPAYDSYLITLLKGCDG-IYETVNSLKRMMERGCNPGMTFFKLAF 284
              EM    G  PD V  Y+  +  + K  +G + E +  L  M   GC P +    +  
Sbjct: 216 LLDEMR-NKGSKPD-VVTYNVLINGICK--EGRLDEAIKFLNNMPSYGCQPNVITHNIIL 271

Query: 285 EE-CLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNG 343
              C TG+ +  AE +   M+ R G  P    +N++I+  C     G A+ +L++M  +G
Sbjct: 272 RSMCSTGRWM-DAEKLLSDML-RKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHG 329

Query: 344 AFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAI 403
             P+  +YN L     K +K+  A    + MV      +       +          VA+
Sbjct: 330 CTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAV 389

Query: 404 KFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKL 459
           +    +    CS +  T N ++ GL  +     A+K    M  KG++      S L
Sbjct: 390 EILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSL 445



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 73/280 (26%), Positives = 108/280 (38%), Gaps = 47/280 (16%)

Query: 100 SPYAWNLVVDLLGKNCLFDAMWDAIKSMKKE----NVLSLATFASVFSSYVVADRVKDAI 155
           S   +N++++ L +  L     D ++ M       N LS       F      DR   AI
Sbjct: 298 SVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDR---AI 354

Query: 156 TTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGW 214
              D+M   GC  D+   N+LL+A+C+DGK   A + L  +  +   P   TY  +++G 
Sbjct: 355 EYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGL 414

Query: 215 EKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCN 274
            K      A K   EM  + G  PD +  Y S               V+ L R  E   +
Sbjct: 415 SKVGKTERAIKLLDEMRRK-GLKPD-IITYSSL--------------VSGLSR--EGKVD 456

Query: 275 PGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMK 334
             + FF           +L G           +G RP+   YN ++   C S +T  A+ 
Sbjct: 457 EAIKFF----------HDLEG-----------LGIRPNAITYNSIMLGLCKSRQTDRAID 495

Query: 335 LLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
            L  M+     P   TY IL E +       EA  L NE+
Sbjct: 496 FLAYMISKRCKPTEATYTILIEGIAYEGLAKEALDLLNEL 535


>gi|357499049|ref|XP_003619813.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494828|gb|AES76031.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 614

 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 83/358 (23%), Positives = 157/358 (43%), Gaps = 29/358 (8%)

Query: 136 ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRV 195
            T  ++     +  +V++A+   D +   G   D  +  +L++ +C+ G+T  A Q LR 
Sbjct: 135 VTITTLIKGLCLNGKVREALHFHDDVIAKGFHLDQVSYGTLINGLCKTGETRAALQVLRK 194

Query: 196 VDG-RIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG 254
           +DG  ++P+   Y  +++   K++ V +A     EM+++  + PD V        TL+ G
Sbjct: 195 IDGLLVQPNVVMYNTIIDSLCKDKLVIHASDLCSEMIVKRIF-PDVVT-----YTTLIYG 248

Query: 255 C---DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRP 311
           C     + E V    +M+ +   P +  F +  +       ++ A  +   M+ + G   
Sbjct: 249 CLIVGRLKEAVGLFNQMLLKNIKPDVYTFNILVDGLCKEGEMKKARNVLAVMIKQ-GVDS 307

Query: 312 DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLF 371
           +   YN ++  Y    +   A  + + M   G  PD+Q+Y+I+   L K + + EA  LF
Sbjct: 308 NIVTYNSLMDGYFLVKQENKATFVFNTMARRGVTPDVQSYSIMINGLCKTKMVDEAVNLF 367

Query: 372 NEMVKNE---NVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHC----SDLSETGNLL 424
            EM       N + + +    +  Y    D       W  + E H     +D+    +LL
Sbjct: 368 KEMHSKSMAPNTVTYNSLIDGLLKYGRISDA------WDLVNEMHNRGQPADVITYSSLL 421

Query: 425 VAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARK----EAVYEELLKK 478
            A LC  H + +A+     + ++GIQ   +  + L   L K  +    +AVY++LL K
Sbjct: 422 DA-LCKNHQVDKAITLITKIKDQGIQPNIYTYTILVDGLCKNGRLKDAQAVYQDLLIK 478



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 66/282 (23%), Positives = 127/282 (45%), Gaps = 6/282 (2%)

Query: 96  NDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLS-LATFASVFSSYVVADRVKDA 154
           N K   Y +N++VD L K        + +  M K+ V S + T+ S+   Y +  +   A
Sbjct: 269 NIKPDVYTFNILVDGLCKEGEMKKARNVLAVMIKQGVDSNIVTYNSLMDGYFLVKQENKA 328

Query: 155 ITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEG 213
              F+ M + G   DV + + +++ +C+     +A    + +  + + P+  TY  L++G
Sbjct: 329 TFVFNTMARRGVTPDVQSYSIMINGLCKTKMVDEAVNLFKEMHSKSMAPNTVTYNSLIDG 388

Query: 214 WEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGC 273
             K   +++A     EM       P +V  Y S L  L K    + + +  + ++ ++G 
Sbjct: 389 LLKYGRISDAWDLVNEM--HNRGQPADVITYSSLLDALCKN-HQVDKAITLITKIKDQGI 445

Query: 274 NPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAM 333
            P +  + +  +       L+ A+ ++  ++ + G+  D  MYN+M++  C       A+
Sbjct: 446 QPNIYTYTILVDGLCKNGRLKDAQAVYQDLLIK-GYHLDVKMYNVMVNGLCKEGLFDEAL 504

Query: 334 KLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
            L+ +M  NG  PD  TY  L   L +  K  +A  L  EM+
Sbjct: 505 SLVSKMEDNGCIPDAVTYETLVRALFENDKNDKAVKLLREMI 546



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 77/340 (22%), Positives = 146/340 (42%), Gaps = 27/340 (7%)

Query: 104 WNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVME 162
           +N ++D L K+ L     D    M  + +   + T+ ++    ++  R+K+A+  F+ M 
Sbjct: 207 YNTIIDSLCKDKLVIHASDLCSEMIVKRIFPDVVTYTTLIYGCLIVGRLKEAVGLFNQML 266

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQFLRV-VDGRIKPDNDTYAILLEGWEKERDVA 221
               K DV+  N L+  +C++G+   A   L V +   +  +  TY  L++G+   +   
Sbjct: 267 LKNIKPDVYTFNILVDGLCKEGEMKKARNVLAVMIKQGVDSNIVTYNSLMDGYFLVKQEN 326

Query: 222 NAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFK 281
            A   F  M    G  PD V +Y S +I  L     + E VN  K M  +   P    + 
Sbjct: 327 KATFVFNTMA-RRGVTPD-VQSY-SIMINGLCKTKMVDEAVNLFKEMHSKSMAPNTVTYN 383

Query: 282 LAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVY 341
              +  L    +  A  +   M  R G   D   Y+ ++   C +++   A+ L+ ++  
Sbjct: 384 SLIDGLLKYGRISDAWDLVNEMHNR-GQPADVITYSSLLDALCKNHQVDKAITLITKIKD 442

Query: 342 NGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYV 401
            G  P+I TY IL + L K  +L +A  ++ +++              ++ Y      ++
Sbjct: 443 QGIQPNIYTYTILVDGLCKNGRLKDAQAVYQDLL--------------IKGY------HL 482

Query: 402 AIKFWKYMIENHCSD-LSETGNLLVAGLCDMHMLPEAVKY 440
            +K +  M+   C + L +    LV+ + D   +P+AV Y
Sbjct: 483 DVKMYNVMVNGLCKEGLFDEALSLVSKMEDNGCIPDAVTY 522



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 84/359 (23%), Positives = 154/359 (42%), Gaps = 51/359 (14%)

Query: 149 DRVKDAITTFD-VMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVD-GRIKPDNDT 206
           D V DA+++F+ ++        +F  N +LS++ +      A  F + ++  +I+PD  T
Sbjct: 42  DNVDDAVSSFNHILHMRNPVQPIFEFNKILSSLVKLNHFHTAISFSKQMELKQIQPDLFT 101

Query: 207 YAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC---DGIYETVN 263
           + IL+  +     +  A     + + ++G+ PD V      + TL+KG      + E ++
Sbjct: 102 FNILINCFCHLGHLNFAFSVLAK-IFKLGFHPDTVT-----ITTLIKGLCLNGKVREALH 155

Query: 264 SLKRMMERGCN-PGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISL 322
               ++ +G +   +++  L    C TG+  R A  +   + G +  +P+  MYN +I  
Sbjct: 156 FHDDVIAKGFHLDQVSYGTLINGLCKTGET-RAALQVLRKIDGLL-VQPNVVMYNTIIDS 213

Query: 323 YCYSNETGAAMKLLDEMVYNGAFPDIQTYN-ILFEFLVKGRKLWEASGLFNEM------- 374
            C       A  L  EM+    FPD+ TY  +++  L+ GR L EA GLFN+M       
Sbjct: 214 LCKDKLVIHASDLCSEMIVKRIFPDVVTYTTLIYGCLIVGR-LKEAVGLFNQMLLKNIKP 272

Query: 375 -VKNENVLNHENCRAA------------VRVYMDSD--------DPYVAIK-------FW 406
            V   N+L    C+              ++  +DS+        D Y  +K        +
Sbjct: 273 DVYTFNILVDGLCKEGEMKKARNVLAVMIKQGVDSNIVTYNSLMDGYFLVKQENKATFVF 332

Query: 407 KYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIK 465
             M     +   ++ ++++ GLC   M+ EAV   K M  K +       + L   L+K
Sbjct: 333 NTMARRGVTPDVQSYSIMINGLCKTKMVDEAVNLFKEMHSKSMAPNTVTYNSLIDGLLK 391


>gi|147797621|emb|CAN62945.1| hypothetical protein VITISV_002230 [Vitis vinifera]
          Length = 912

 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 113/490 (23%), Positives = 197/490 (40%), Gaps = 73/490 (14%)

Query: 14  SPDPHNKRKR-------STFASHL-----DVPNLPPTIKTLCEIIANTPSPTVEDVLDKT 61
           SP P +   R       S  ASH+        ++   ++TL        SPT    L + 
Sbjct: 49  SPSPPSMAARTLANTHASPLASHIAQLLSTASSITSFLQTLNPQNPTPNSPTSISPLSQF 108

Query: 62  LIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLND----KHSPYAWNLVVDLLGKNCLF 117
              ++   V QV+K S  +P  A+ FF W++    +     HS   +  + DLL  + LF
Sbjct: 109 APFLNPXLVIQVIK-SQKNPYHALFFFNWASNPNPNPNNYSHSHLCYVAITDLLISHGLF 167

Query: 118 DAMWDAIKSMKKENVLSLATFASVFSSYVVADR--VKDAITTFDVMEQYGCKHDVFALNS 175
                 ++S  + +  + A F   +      DR  ++ AI  F   ++      +F+ N+
Sbjct: 168 STASSLLQSHHRLSDFAAAKFVKAY-----GDRGDIRGAIHWFHRAKKMESGRCLFSYNA 222

Query: 176 LLSAICRDGKTIDAWQ-FLRVV-DGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIE 233
           +L    +  + + A   F ++V +G +KPD  TY  ++ G+ K   + NAK  F EM   
Sbjct: 223 ILGVFVKANRIMLARAVFDQIVKEGVVKPDVSTYTTIIRGYCKMGMIENAKNVFDEM--- 279

Query: 234 VGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNL 293
            G  P N+  Y++ +    K   G+ E+   +   M               E+C+     
Sbjct: 280 -GCKP-NLVTYNTMINGFCK--KGLMESAMKIVDQMTET------------EDCM----- 318

Query: 294 RGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNI 353
                            PDT  Y  +I  YC   E   AMK ++EMV     P++ TYN 
Sbjct: 319 -----------------PDTVTYTTLIDGYCKRGELEEAMKYMEEMVSRNCEPNVLTYNA 361

Query: 354 LFEFLVKGRKLWEASGLFNEMVKN---ENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMI 410
           +   L     + EA  +   M  N   +NV  H +    + V    DD   A +  K M+
Sbjct: 362 IIYGLCLNGNVDEAKRMMTRMRLNGLKDNVATHTSILKGLCVVGKLDD---AARHLKEMV 418

Query: 411 ENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEA 470
                  ++   ++V   C +    +A+   K M  +GI  +  + + + +IL+++ K  
Sbjct: 419 GLGMEADAKAYGVVVNEYCKIGKADDAISLLKEMKSRGINPSVSSFNAVFRILVESGKTD 478

Query: 471 VYEELLKKCK 480
               +L++ K
Sbjct: 479 KAGLILRQMK 488



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 65/312 (20%), Positives = 134/312 (42%), Gaps = 12/312 (3%)

Query: 104 WNLVVDLLGKNCLFDAMWDAIKSMKK-ENVL-SLATFASVFSSYVVADRVKDAITTFDVM 161
           +N +++   K  L ++    +  M + E+ +    T+ ++   Y     +++A+   + M
Sbjct: 288 YNTMINGFCKKGLMESAMKIVDQMTETEDCMPDTVTYTTLIDGYCKRGELEEAMKYMEEM 347

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERDV 220
               C+ +V   N+++  +C +G   +A + + R+    +K +  T+  +L+G      +
Sbjct: 348 VSRNCEPNVLTYNAIIYGLCLNGNVDEAKRMMTRMRLNGLKDNVATHTSILKGLCVVGKL 407

Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC--DGIYETVNSLKRMMERGCNPGMT 278
            +A +   EMV  +G + D      +Y + + + C      + ++ LK M  RG NP ++
Sbjct: 408 DDAARHLKEMV-GLGMEAD----AKAYGVVVNEYCKIGKADDAISLLKEMKSRGINPSVS 462

Query: 279 FFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYS-NETGAAMKLLD 337
            F   F   +       A  I   M  ++G  P+   Y+ +I   C +        + +D
Sbjct: 463 SFNAVFRILVESGKTDKAGLILRQM-KQLGCTPNFLSYSTVIDGLCKAKGRMHEVEEFVD 521

Query: 338 EMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSD 397
           +M  NG   D   Y+ L +   +      A  LF EM+    V+N E+  A V+     +
Sbjct: 522 DMCRNGHHLDASMYSWLVKGYCEDGNADMAMRLFCEMLDMGYVINLESFLAFVKGLSAKE 581

Query: 398 DPYVAIKFWKYM 409
             +   KF++ M
Sbjct: 582 KAFEVEKFFEEM 593


>gi|225430658|ref|XP_002268375.1| PREDICTED: pentatricopeptide repeat-containing protein At5g18390,
           mitochondrial [Vitis vinifera]
 gi|296085168|emb|CBI28663.3| unnamed protein product [Vitis vinifera]
          Length = 454

 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 76/327 (23%), Positives = 137/327 (41%), Gaps = 17/327 (5%)

Query: 54  VEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGK 113
           +E  L+K  I V+ + V +VL+   +    +++FF W+   L+ + +   +  ++  L +
Sbjct: 63  LERTLNKLPISVTSDLVYRVLRSCPNSGTESLRFFNWARSHLSYQPTTLEYEELLKTLAR 122

Query: 114 NCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFD-VMEQYGCKHDVFA 172
              F  MW     M+    LS    +S+   +     V  A+  F+       C   +  
Sbjct: 123 TKQFQPMWKIAHQMQ---TLSPTVVSSIIEEFGKHGLVDQAVEVFNKAKSALNCPQTIEV 179

Query: 173 LNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMV 231
            NSLL A+C       A+  + R++   + P+  TY++L+ GW     +  A+    EM 
Sbjct: 180 YNSLLFALCEVKYFHGAYALIRRMIRKGVTPNKQTYSVLVNGWCAAGKMKEAQDFLEEMS 239

Query: 232 IEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSL-KRMMERGCNPGMTFFKLAFEE-CLT 289
            + G++P  V   D  +  LL    G  E    + ++M + GC P +       E  C  
Sbjct: 240 RK-GFNPP-VRGRDLLVDGLLNA--GYLEAAKEMVRKMTKEGCAPDVETLNSMLEAICKA 295

Query: 290 GQNLRGAEFIWGAM--VGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPD 347
           G+    AEF       V R+G  P+   Y +MI   C       A ++L   + +G  P 
Sbjct: 296 GE----AEFCIDIYNDVCRLGVSPNVGTYKIMIPAACKEGRIDEAFRILHRSIEDGHRPF 351

Query: 348 IQTYNILFEFLVKGRKLWEASGLFNEM 374
              Y  + + L +  +  +A   F++M
Sbjct: 352 PSLYAPIIKALCRNGQFDDAFCFFSDM 378


>gi|224713522|gb|ACN62068.1| PPR-814b [Zea mays]
          Length = 814

 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 90/382 (23%), Positives = 162/382 (42%), Gaps = 15/382 (3%)

Query: 99  HSPYAWNLVVDLLG---KNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDA 154
            +P  ++  + L G   K CL D M D    M  + +   + TF  +  +Y     +  A
Sbjct: 355 QNPNVFSYTIMLNGYATKGCLVD-MTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKA 413

Query: 155 ITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEG 213
           +  F+ M  +G K DV    ++++A+CR GK  DA + F +++D  + PD   Y  L++G
Sbjct: 414 MIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQG 473

Query: 214 WEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGC 273
           +     +  AK+   E ++  G   D V  + S +I  L     + +  N     +  G 
Sbjct: 474 FCTHGSLLKAKELISE-IMNNGMHLDIV--FFSSIINNLCKLGRVMDAQNIFDLTVNVGL 530

Query: 274 NPGMTFFKLAFEE-CLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAA 332
           +P    + +  +  CL G+ +  A  ++ AMV   G  P+  +Y  +++ YC        
Sbjct: 531 HPTAVVYSMLMDGYCLVGK-MEKALRVFDAMVS-AGIEPNDVVYGTLVNGYCKIGRIDEG 588

Query: 333 MKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRV 392
           + L  EM+  G  P    YNI+ + L +  +   A   F+EM ++   +N       +R 
Sbjct: 589 LSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYNIVLRG 648

Query: 393 YMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVT 452
              +     AI  +K +   +      T N ++AG+     + EA      ++  G+   
Sbjct: 649 LFKNRCFDEAIFLFKELRAMNVKINIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPC 708

Query: 453 PFALSKLKQILIKARKEAVYEE 474
               S +   LI   KE + EE
Sbjct: 709 VVTYSIMITNLI---KEGLVEE 727



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 75/303 (24%), Positives = 135/303 (44%), Gaps = 9/303 (2%)

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV--DGRI-KPDNDTYAILLEGWEKERD 219
           + GC  DVF+ + LL ++C  GK+  A   LR++   G +  PD   Y+ +++G+ KE D
Sbjct: 175 ELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYSTVIDGFFKEGD 234

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGM-T 278
           V  A   F EMV + G  PD V  Y S +  L K    + +    L++M+ +G  P   T
Sbjct: 235 VNKACDLFKEMV-QRGIPPDFV-TYSSVVHALCKA-RAMDKAEAFLRQMVNKGVLPNNWT 291

Query: 279 FFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDE 338
           +  L +    TGQ  + A  ++  M  R    PD    +M++   C   +   A  + D 
Sbjct: 292 YNNLIYGYSSTGQ-WKEAVRVFKEM-RRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDT 349

Query: 339 MVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDD 398
           M   G  P++ +Y I+         L + + LF+ M+ +    +       ++ Y +   
Sbjct: 350 MAMKGQNPNVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGM 409

Query: 399 PYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSK 458
              A+  +  M ++       T   ++A LC +  + +A++    M ++G+    +A   
Sbjct: 410 LDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHC 469

Query: 459 LKQ 461
           L Q
Sbjct: 470 LIQ 472



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 71/290 (24%), Positives = 119/290 (41%), Gaps = 17/290 (5%)

Query: 99  HSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSL------------ATFASVFSSYV 146
           H       V D+   + L  ++ D  KS + +++L +              +++V   + 
Sbjct: 171 HRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYSTVIDGFF 230

Query: 147 VADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGRIKPDND 205
               V  A   F  M Q G   D    +S++ A+C+      A  FLR +V+  + P+N 
Sbjct: 231 KEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPNNW 290

Query: 206 TYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSL 265
           TY  L+ G+        A + F EM       PD V    S L+  L     I E  +  
Sbjct: 291 TYNNLIYGYSSTGQWKEAVRVFKEMRRH-SILPDVVTL--SMLMGSLCKYGKIKEARDVF 347

Query: 266 KRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCY 325
             M  +G NP +  + +      T   L     ++  M+G  G  PD + +N++I  Y  
Sbjct: 348 DTMAMKGQNPNVFSYTIMLNGYATKGCLVDMTDLFDLMLGD-GIAPDIYTFNVLIKAYAN 406

Query: 326 SNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
                 AM + +EM  +G  PD+ TY  +   L +  K+ +A   FN+M+
Sbjct: 407 CGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMI 456



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 66/281 (23%), Positives = 110/281 (39%), Gaps = 16/281 (5%)

Query: 178 SAICRDGKTIDAWQFLRVVDGR-----IKPDNDTYAILLEGWEKERDVANAKKTFGEMVI 232
           SA CR G  +    F R          + P + TYAIL++   +      A   FG++ +
Sbjct: 80  SAACRSGPALAVALFNRAASRAQGPRVLSPTSHTYAILMDCCTRAHRPELALAFFGQL-L 138

Query: 233 EVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMER----GCNPGMTFFKLAFEE-C 287
             G   + + A       LLKG      T  +L  ++ R    GC P +  + +  +  C
Sbjct: 139 RTGLRVNIIIANH-----LLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLC 193

Query: 288 LTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPD 347
             G++ +  + +     G     PD   Y+ +I  +    +   A  L  EMV  G  PD
Sbjct: 194 DQGKSGQADDLLRMMAEGGAVCSPDVVAYSTVIDGFFKEGDVNKACDLFKEMVQRGIPPD 253

Query: 348 IQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWK 407
             TY+ +   L K R + +A     +MV    + N+      +  Y  +     A++ +K
Sbjct: 254 FVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFK 313

Query: 408 YMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448
            M  +       T ++L+  LC    + EA      MA KG
Sbjct: 314 EMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKG 354



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 64/269 (23%), Positives = 109/269 (40%), Gaps = 34/269 (12%)

Query: 133 LSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ- 191
           L +  F+S+ ++     RV DA   FD+    G        + L+   C  GK   A + 
Sbjct: 497 LDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRV 556

Query: 192 FLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITL 251
           F  +V   I+P++  Y  L+ G+ K   +      F EM ++ G  P  +     Y I +
Sbjct: 557 FDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREM-LQKGIKPSTI----LYNIII 611

Query: 252 LKGCDGIYE---TVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRG---------AEFI 299
               DG++E   TV +  +  E      MT   +A  +C     LRG         A F+
Sbjct: 612 ----DGLFEAGRTVPAKVKFHE------MTESGIAMNKCTYNIVLRGLFKNRCFDEAIFL 661

Query: 300 WGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLV 359
           +  +   +  + +    N MI+    +     A  L   +  +G  P + TY+I+   L+
Sbjct: 662 FKELRA-MNVKINIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPCVVTYSIMITNLI 720

Query: 360 KGRKLWEASGLFNEMVK-----NENVLNH 383
           K   + EA  +F+ M       +  +LNH
Sbjct: 721 KEGLVEEAEDMFSSMQNAGCEPDSRLLNH 749


>gi|242058301|ref|XP_002458296.1| hypothetical protein SORBIDRAFT_03g030790 [Sorghum bicolor]
 gi|241930271|gb|EES03416.1| hypothetical protein SORBIDRAFT_03g030790 [Sorghum bicolor]
          Length = 1035

 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 82/342 (23%), Positives = 148/342 (43%), Gaps = 57/342 (16%)

Query: 138 FASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDA-WQFLRVV 196
           F   FS+Y     +  A+  F+ M Q G   D  +  +L+ A+C+ G+  DA  +F +++
Sbjct: 381 FNIFFSAYAKCGIIDKAMDIFNKMRQQGLSPDAVSYGALIDALCKLGRVDDAEVKFNQMI 440

Query: 197 DGRIKPDNDTYAILLEG------WEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLIT 250
           +  + PD   ++ L+ G      WEK       ++ F EM + VG  P N+  +++ L  
Sbjct: 441 NEGVTPDIVVFSSLVYGLCTVDKWEK------VEELFFEM-LNVGIHP-NIVFFNTILCN 492

Query: 251 LLKGCDG-IYETVNSLKRMMERGCNPG-MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIG 308
           L K  +G + E    +  +   G  P  +++  L    CL G     ++ + G +   +G
Sbjct: 493 LCK--EGRVMEGQRLVDSIECMGVRPDVISYNTLIDGHCLAGTIDEASKLLEGMV--SVG 548

Query: 309 FRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEAS 368
            +PD+  YN ++  YC +    +A     +M+ NG  P + TYN +   L + ++  EA 
Sbjct: 549 LKPDSFSYNTLLHGYCKAGRIDSAYSHFRKMLSNGITPGVVTYNTILHGLFQTKRFSEAK 608

Query: 369 GLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGL 428
            L+         LN  N      +Y                          T N+++ GL
Sbjct: 609 ELY---------LNMINSGTKWDIY--------------------------TYNIILNGL 633

Query: 429 CDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIK-ARKE 469
           C  + + EA+K  + +  KG+Q+     + +   L+K  RKE
Sbjct: 634 CKSNCVDEAIKMFQNLCSKGLQLNIITFNIMIGALLKGGRKE 675



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 81/366 (22%), Positives = 151/366 (41%), Gaps = 12/366 (3%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVM 161
           ++  ++D L K    D        M  E V   +  F+S+       D+ +     F  M
Sbjct: 415 SYGALIDALCKLGRVDDAEVKFNQMINEGVTPDIVVFSSLVYGLCTVDKWEKVEELFFEM 474

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDV 220
              G   ++   N++L  +C++G+ ++  + +  ++   ++PD  +Y  L++G      +
Sbjct: 475 LNVGIHPNIVFFNTILCNLCKEGRVMEGQRLVDSIECMGVRPDVISYNTLIDGHCLAGTI 534

Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG-CDG--IYETVNSLKRMMERGCNPGM 277
             A K   E ++ VG  PD+  +Y+    TLL G C    I    +  ++M+  G  PG+
Sbjct: 535 DEASKLL-EGMVSVGLKPDSF-SYN----TLLHGYCKAGRIDSAYSHFRKMLSNGITPGV 588

Query: 278 TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLD 337
             +          +    A+ ++  M+   G + D + YN++++  C SN    A+K+  
Sbjct: 589 VTYNTILHGLFQTKRFSEAKELYLNMINS-GTKWDIYTYNIILNGLCKSNCVDEAIKMFQ 647

Query: 338 EMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSD 397
            +   G   +I T+NI+   L+KG +  +A  LF  +  N  V N    R  V   ++  
Sbjct: 648 NLCSKGLQLNIITFNIMIGALLKGGRKEDAMDLFAAIPANGLVQNVVTYRLVVENLIEEG 707

Query: 398 DPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALS 457
                   +  M +N  +  S+  N LV  L     +  A  Y   + E+   V     S
Sbjct: 708 SLEEFDSLFSAMEKNGTAPNSQMLNALVRRLLHRGDISRAGAYLSKLDERNFSVEASTTS 767

Query: 458 KLKQIL 463
            L  I 
Sbjct: 768 MLISIF 773



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 59/249 (23%), Positives = 103/249 (41%), Gaps = 8/249 (3%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-- 191
           ++ ++++V + +    +V      F  M   G   DV    +++  +C+  +  D  +  
Sbjct: 202 NVVSYSTVINGFFTEGQVDKPYNLFLEMMDRGIPPDVVTYTTVIDGLCK-AQLFDRAEAV 260

Query: 192 FLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITL 251
           F +++D  +KP+ DTY  L+ G+          +   EM    G    N   Y S L  L
Sbjct: 261 FQQMIDNGVKPNIDTYNCLIHGYLSIGKWKEVVRMLEEM--SAGGPKPNCCTYGSLLNYL 318

Query: 252 LKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRP 311
            K      E       M+ +G  P +T + +      T   L     +   MV   G  P
Sbjct: 319 CKN-GRCREARFFFDSMIGKGIKPSVTTYGIMLHGYATKGALSEMHDLLNLMVAN-GISP 376

Query: 312 DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLF 371
           + H++N+  S Y        AM + ++M   G  PD  +Y  L + L K  ++ +A   F
Sbjct: 377 NHHIFNIFFSAYAKCGIIDKAMDIFNKMRQQGLSPDAVSYGALIDALCKLGRVDDAEVKF 436

Query: 372 NEMVKNENV 380
           N+M+ NE V
Sbjct: 437 NQMI-NEGV 444



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 83/352 (23%), Positives = 145/352 (41%), Gaps = 62/352 (17%)

Query: 146 VVADRVK-------DAITTFDVMEQYGCKHDVFALNSLLSAICR---------DGKTIDA 189
           V+ADR +       DA+  FD +  +     V A N LL+A+ R         + +T+ +
Sbjct: 18  VIADRARSGSLGLGDALKLFDELLPHARPASVVAFNHLLAAVSRSSGRRSTTSESETVVS 77

Query: 190 WQFLRVVDGRIK--PDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSY 247
                V D  IK  P+  TY+IL+  + +   + +    FG ++++ GW  D++      
Sbjct: 78  LFNRMVRDCYIKVAPNRCTYSILIGCFCRMGHLEHGFAAFG-LILKTGWRMDHI-----V 131

Query: 248 LITLLKG-CDG--IYETVNS-LKRMMERGCNPGMTFFKLAF---------EECLTGQNLR 294
           +  LL G CDG  + E ++  L+RM E GC P    + +           EE L   ++ 
Sbjct: 132 INQLLNGLCDGKRVGEAMDVLLQRMPELGCMPDTVSYNILLKGLCNEKRAEEALELLHMM 191

Query: 295 GAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNIL 354
             + +W          P+   Y+ +I+ +    +      L  EM+  G  PD+ TY  +
Sbjct: 192 ADDQVWSC-------PPNVVSYSTVINGFFTEGQVDKPYNLFLEMMDRGIPPDVVTYTTV 244

Query: 355 FEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHC 414
            + L K +    A  +F +M+ N         +  +  Y      Y++I  WK ++    
Sbjct: 245 IDGLCKAQLFDRAEAVFQQMIDN-------GVKPNIDTYNCLIHGYLSIGKWKEVVR-ML 296

Query: 415 SDLSETG--------NLLVAGLCDMHMLPEAVKYAKGMAEKGIQ--VTPFAL 456
            ++S  G          L+  LC      EA  +   M  KGI+  VT + +
Sbjct: 297 EEMSAGGPKPNCCTYGSLLNYLCKNGRCREARFFFDSMIGKGIKPSVTTYGI 348



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 83/382 (21%), Positives = 136/382 (35%), Gaps = 48/382 (12%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTI-DAWQFL-- 193
           T++ +   +     ++     F ++ + G + D   +N LL+ +C DGK + +A   L  
Sbjct: 96  TYSILIGCFCRMGHLEHGFAAFGLILKTGWRMDHIVINQLLNGLC-DGKRVGEAMDVLLQ 154

Query: 194 RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWD-PDNVPAYDSYLITLL 252
           R+ +    PD  +Y ILL+G   E+    A +    M  +  W  P NV +Y     T++
Sbjct: 155 RMPELGCMPDTVSYNILLKGLCNEKRAEEALELLHMMADDQVWSCPPNVVSYS----TVI 210

Query: 253 KG--CDG-IYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGF 309
            G   +G + +  N    MM+RG  P +  +    +     Q    AE ++  M+   G 
Sbjct: 211 NGFFTEGQVDKPYNLFLEMMDRGIPPDVVTYTTVIDGLCKAQLFDRAEAVFQQMIDN-GV 269

Query: 310 RPDTHMYNMMISLY-----------------------------------CYSNETGAAMK 334
           +P+   YN +I  Y                                   C +     A  
Sbjct: 270 KPNIDTYNCLIHGYLSIGKWKEVVRMLEEMSAGGPKPNCCTYGSLLNYLCKNGRCREARF 329

Query: 335 LLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYM 394
             D M+  G  P + TY I+         L E   L N MV N    NH         Y 
Sbjct: 330 FFDSMIGKGIKPSVTTYGIMLHGYATKGALSEMHDLLNLMVANGISPNHHIFNIFFSAYA 389

Query: 395 DSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPF 454
                  A+  +  M +   S  + +   L+  LC +  + +A      M  +G+     
Sbjct: 390 KCGIIDKAMDIFNKMRQQGLSPDAVSYGALIDALCKLGRVDDAEVKFNQMINEGVTPDIV 449

Query: 455 ALSKLKQILIKARKEAVYEELL 476
             S L   L    K    EEL 
Sbjct: 450 VFSSLVYGLCTVDKWEKVEELF 471



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 84/405 (20%), Positives = 166/405 (40%), Gaps = 49/405 (12%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLA------TFASVFSSYVVADRVKDAIT 156
           ++N ++D    +CL   + +A K +  E ++S+       ++ ++   Y  A R+  A +
Sbjct: 520 SYNTLID---GHCLAGTIDEASKLL--EGMVSVGLKPDSFSYNTLLHGYCKAGRIDSAYS 574

Query: 157 TFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWE 215
            F  M   G    V   N++L  + +  +  +A + +L +++   K D  TY I+L G  
Sbjct: 575 HFRKMLSNGITPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKWDIYTYNIILNGLC 634

Query: 216 KERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNP 275
           K   V  A K F  +  + G    N+  ++  +  LLKG     + ++    +   G   
Sbjct: 635 KSNCVDEAIKMFQNLCSK-GLQL-NIITFNIMIGALLKGGRK-EDAMDLFAAIPANGLVQ 691

Query: 276 GMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNE---TGAA 332
            +  ++L  E  +   +L   + ++ AM  + G  P++ M N ++    +  +    GA 
Sbjct: 692 NVVTYRLVVENLIEEGSLEEFDSLFSAM-EKNGTAPNSQMLNALVRRLLHRGDISRAGAY 750

Query: 333 MKLLDEMVYN----------------------GAFPDIQTYNILFE-----FLVKGRKLW 365
           +  LDE  ++                       + P  + Y IL E      + K R++ 
Sbjct: 751 LSKLDERNFSVEASTTSMLISIFSSDEYQHHAKSLP--KKYRILNEANSSALIKKARRID 808

Query: 366 EASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLV 425
           +A  LF EM+      +       +     +     A + +  MI +       T N+++
Sbjct: 809 DAYSLFREMLMKGLTPDVVTYNTILHGLFQTGRFSEAKELYLSMINSRTQMNIYTYNIIL 868

Query: 426 AGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIK-ARKE 469
            GLC  + + EA K  + +  KG+Q+     + +   L+K  RKE
Sbjct: 869 NGLCKSNCVDEAFKMFQSLCSKGLQLNIITFNIMIGALLKGGRKE 913



 Score = 42.4 bits (98), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 76/345 (22%), Positives = 127/345 (36%), Gaps = 37/345 (10%)

Query: 132  VLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ 191
            V ++ T+  V  + +    +++  + F  ME+ G   +   LN+L+  +   G    A  
Sbjct: 690  VQNVVTYRLVVENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRLLHRGDISRAGA 749

Query: 192  FLRVVDGR------------------------IKPDNDTYAILLEG-----WEKERDVAN 222
            +L  +D R                         K     Y IL E       +K R + +
Sbjct: 750  YLSKLDERNFSVEASTTSMLISIFSSDEYQHHAKSLPKKYRILNEANSSALIKKARRIDD 809

Query: 223  AKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKL 282
            A   F EM+++ G  PD V  Y++ L  L +   G +     L   M         +   
Sbjct: 810  AYSLFREMLMK-GLTPD-VVTYNTILHGLFQ--TGRFSEAKELYLSMINSRTQMNIYTYN 865

Query: 283  AFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYN 342
                 L   N     F     +   G + +   +N+MI           AM L   +  N
Sbjct: 866  IILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFNIMIGALLKGGRKEDAMDLFAAIPAN 925

Query: 343  GAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVA 402
            G  PD+ TY ++ E L++   L E  GLF  M K+   L+     A VR  +   D   A
Sbjct: 926  GLVPDVVTYRLVAENLIEEGSLEEFDGLFLTMEKSGTPLDSRLLNALVRRLLQRGDISRA 985

Query: 403  IKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEK 447
              +   + E + S  + T + L++    +    E   +AK + EK
Sbjct: 986  GAYLSKLDEKNFSLEASTTSELIS----LFSRGEYQHHAKSLPEK 1026


>gi|297791089|ref|XP_002863429.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297309264|gb|EFH39688.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 472

 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 85/326 (26%), Positives = 136/326 (41%), Gaps = 18/326 (5%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-- 191
           S   + +V +  V  +++  A   +  M + G    V +LN L+ A+CR+  T+DA    
Sbjct: 120 SQKAYVTVLAILVEENQLNLAFKFYKNMREIGLPPTVASLNVLIKALCRNDGTVDAGLKI 179

Query: 192 FLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSY--LI 249
           F  +      PD+ TY  L+ G  +   +  AKK F EMV     + D  P   +Y  LI
Sbjct: 180 FHEMPKRGCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMV-----EKDCAPTVVTYTSLI 234

Query: 250 TLLKGCDGIYETVNSLKRMMERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIG 308
             L G   + E +  ++ M  +G  P + T+  L    C  G++L+  E ++  M+ R G
Sbjct: 235 NGLCGSKNVDEAMRYVEEMKGKGIEPNVFTYSSLMDGLCKDGRSLQAME-LFEMMMAR-G 292

Query: 309 FRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEAS 368
            RP+   Y  +I+  C   +   A++LLD M   G  PD   Y  +        K  EA+
Sbjct: 293 CRPNMVTYTTLITGLCKEQKIQEAVELLDRMNLQGLKPDAGLYGKVISGFCAVSKFREAA 352

Query: 369 GLFNEMVKNENVLN------HENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGN 422
              +EM+      N      H      V   + ++ P  A   +  M     S   ET +
Sbjct: 353 NFLDEMILGGITPNRLTWNIHVKTSNEVVRGLCTNYPSRAFTLYLSMRSRGISVEVETLD 412

Query: 423 LLVAGLCDMHMLPEAVKYAKGMAEKG 448
            LV  LC      +AV+    +   G
Sbjct: 413 SLVKCLCKKGEFQKAVQLVDEIVTDG 438



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 79/356 (22%), Positives = 151/356 (42%), Gaps = 48/356 (13%)

Query: 26  FASHLDVPNLPPTIKTLCEIIANTPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAV 85
           F  ++    LPPT+ +L             +VL K L R +  TV+  LK  +  P    
Sbjct: 143 FYKNMREIGLPPTVASL-------------NVLIKALCR-NDGTVDAGLKIFHEMPKRGC 188

Query: 86  KFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIK----SMKKENVLSLATFASV 141
                      D  S Y +  ++  L   C F  + +A K     ++K+   ++ T+ S+
Sbjct: 189 -----------DPDS-YTYGTLISGL---CRFGRIDEAKKLFTEMVEKDCAPTVVTYTSL 233

Query: 142 FSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-I 200
            +    +  V +A+   + M+  G + +VF  +SL+  +C+DG+++ A +   ++  R  
Sbjct: 234 INGLCGSKNVDEAMRYVEEMKGKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGC 293

Query: 201 KPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYE 260
           +P+  TY  L+ G  KE+ +  A +    M ++ G  PD        +I+         E
Sbjct: 294 RPNMVTYTTLITGLCKEQKIQEAVELLDRMNLQ-GLKPD--AGLYGKVISGFCAVSKFRE 350

Query: 261 TVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRG--------AEFIWGAMVGRIGFRPD 312
             N L  M+  G  P    + +  +   + + +RG        A  ++ +M  R G   +
Sbjct: 351 AANFLDEMILGGITPNRLTWNIHVKT--SNEVVRGLCTNYPSRAFTLYLSMRSR-GISVE 407

Query: 313 THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEAS 368
               + ++   C   E   A++L+DE+V +G  P+  T+ +L    +    + EAS
Sbjct: 408 VETLDSLVKCLCKKGEFQKAVQLVDEIVTDGCIPNKGTWKLLIGHTLDNTIVGEAS 463



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 57/243 (23%), Positives = 93/243 (38%), Gaps = 40/243 (16%)

Query: 239 DNVPAYDSYLITLLKGCDGIYETVNSLK---RMMERGCNPGMTFFKLAFEECLTGQNLRG 295
           +N    +  L+++ +G   ++   +SL+   +M +  C+P    + +     L  +N   
Sbjct: 80  ENCVVSEDILLSICRGYGRVHRPFDSLRVFHKMKDFDCDPSQKAY-VTVLAILVEENQLN 138

Query: 296 AEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNET-GAAMKLLDEMVYNGAFPDIQTYNIL 354
             F +   +  IG  P     N++I   C ++ T  A +K+  EM   G  PD  TY  L
Sbjct: 139 LAFKFYKNMREIGLPPTVASLNVLIKALCRNDGTVDAGLKIFHEMPKRGCDPDSYTYGTL 198

Query: 355 FEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHC 414
              L +  ++ EA  LF EMV                                   E  C
Sbjct: 199 ISGLCRFGRIDEAKKLFTEMV-----------------------------------EKDC 223

Query: 415 SDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEE 474
           +    T   L+ GLC    + EA++Y + M  KGI+   F  S L   L K  +     E
Sbjct: 224 APTVVTYTSLINGLCGSKNVDEAMRYVEEMKGKGIEPNVFTYSSLMDGLCKDGRSLQAME 283

Query: 475 LLK 477
           L +
Sbjct: 284 LFE 286



 Score = 45.1 bits (105), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 75/322 (23%), Positives = 124/322 (38%), Gaps = 51/322 (15%)

Query: 136 ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRD-GKTIDAWQFLR 194
           ++F  + S  V A++ K A    D++ +   ++ V + + LLS ICR  G+    +  LR
Sbjct: 52  SSFGYMVSRLVSANKFKAA---EDIVARMKIENCVVSEDILLS-ICRGYGRVHRPFDSLR 107

Query: 195 VV----DGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLIT 250
           V     D    P    Y  +L    +E  +  A K +  M  E+G  P    A  + LI 
Sbjct: 108 VFHKMKDFDCDPSQKAYVTVLAILVEENQLNLAFKFYKNMR-EIGLPP--TVASLNVLIK 164

Query: 251 LLKGCDGIYET-VNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGF 309
            L   DG  +  +     M +RGC+P                                  
Sbjct: 165 ALCRNDGTVDAGLKIFHEMPKRGCDP---------------------------------- 190

Query: 310 RPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASG 369
             D++ Y  +IS  C       A KL  EMV     P + TY  L   L   + + EA  
Sbjct: 191 --DSYTYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGSKNVDEAMR 248

Query: 370 LFNEMVKNENVLNHENCRAAVRVYMDSDDPYV-AIKFWKYMIENHCSDLSETGNLLVAGL 428
              EM K + +  +    +++   +  D   + A++ ++ M+   C     T   L+ GL
Sbjct: 249 YVEEM-KGKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLITGL 307

Query: 429 CDMHMLPEAVKYAKGMAEKGIQ 450
           C    + EAV+    M  +G++
Sbjct: 308 CKEQKIQEAVELLDRMNLQGLK 329


>gi|297848852|ref|XP_002892307.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis
            lyrata subsp. lyrata]
 gi|297338149|gb|EFH68566.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis
            lyrata subsp. lyrata]
          Length = 1164

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 90/387 (23%), Positives = 156/387 (40%), Gaps = 10/387 (2%)

Query: 98   KHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAIT 156
            K + Y +  ++ LL + C      +A   M  + +L     + ++   +     ++ A  
Sbjct: 736  KPNSYTYGSIIGLLCRICKLAEAEEAFSEMIGQGILPDTIVYTTLVDGFCKRGDIRAASK 795

Query: 157  TFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWE 215
             F  M       DV    +++S  C+ G  ++A +    +  R ++PD  T+  L+ G+ 
Sbjct: 796  FFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMLCRGLEPDIITFTELMNGYC 855

Query: 216  KERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSL-KRMMERGCN 274
            K   + +A +    M I+ G  P NV  Y + +  L K  +G  ++ N L   M + G  
Sbjct: 856  KAGHIKDAFRVHNHM-IQAGCSP-NVVTYTTLIDGLCK--EGDLDSANELLHEMWKIGLQ 911

Query: 275  PGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAM 333
            P + T+  +    C +G N+  A  + G      G   DT  Y  ++  YC S E   A 
Sbjct: 912  PNIFTYNSIVNGLCKSG-NIEEAVKLVGEFEAA-GLNADTVTYTTLMDAYCKSGEMDKAQ 969

Query: 334  KLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVY 393
            ++L EM+  G  P I T+N+L         L +   L N M+      N       V+ Y
Sbjct: 970  EILTEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNCLVKQY 1029

Query: 394  MDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTP 453
               ++   A   +K M         +T   LV G C+   + EA    + M  KG  V+ 
Sbjct: 1030 CIRNNLKAATAIYKDMCSRGVEPDGKTYENLVKGHCNARNMKEAWFLFQEMKGKGFSVSV 1089

Query: 454  FALSKLKQILIKARKEAVYEELLKKCK 480
               S L +   K +K     E+  + +
Sbjct: 1090 STYSVLIKGFFKRKKFVEAREIFDQMR 1116



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 57/245 (23%), Positives = 111/245 (45%), Gaps = 7/245 (2%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           ++A++  V        R+ +A     +ME  G   DV + +++++  CR G+    W+ +
Sbjct: 668 NVASYNIVIHFVCQLGRINEAHHLLLLMELKGYTPDVISYSTVINGYCRFGELDKVWKLI 727

Query: 194 RVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
             +  + +KP++ TY  ++    +   +A A++ F EM+ + G  PD +  Y + +    
Sbjct: 728 EKMKQKGLKPNSYTYGSIIGLLCRICKLAEAEEAFSEMIGQ-GILPDTI-VYTTLVDGFC 785

Query: 253 KGCDGIYETVNSLKRMMERGCNPG-MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRP 311
           K  D I         M  R   P  +T+  +    C  G  +   + ++  M+ R G  P
Sbjct: 786 KRGD-IRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGK-LFHEMLCR-GLEP 842

Query: 312 DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLF 371
           D   +  +++ YC +     A ++ + M+  G  P++ TY  L + L K   L  A+ L 
Sbjct: 843 DIITFTELMNGYCKAGHIKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELL 902

Query: 372 NEMVK 376
           +EM K
Sbjct: 903 HEMWK 907



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 70/322 (21%), Positives = 134/322 (41%), Gaps = 20/322 (6%)

Query: 77   SYSHPGPAVKFFRWSAYQLNDKHSP--YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL- 133
             Y   G     FR   + +    SP    +  ++D L K    D+  + +  M K  +  
Sbjct: 853  GYCKAGHIKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQP 912

Query: 134  SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
            ++ T+ S+ +    +  +++A+      E  G   D     +L+ A C+ G+   A + L
Sbjct: 913  NIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEIL 972

Query: 194  RVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPD----NVPAYDSYL 248
              + G+ ++P   T+ +L+ G+     + + +K    M+ + G  P+    N       +
Sbjct: 973  TEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAK-GIAPNATTFNCLVKQYCI 1031

Query: 249  ITLLKGCDGIYETVNSLKRMMERGCNP-GMTFFKLAFEECLTGQNLRGAEFIWGAMVGRI 307
               LK    IY      K M  RG  P G T+  L    C   +N++ A F++  M G+ 
Sbjct: 1032 RNNLKAATAIY------KDMCSRGVEPDGKTYENLVKGHC-NARNMKEAWFLFQEMKGK- 1083

Query: 308  GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEA 367
            GF      Y+++I  +    +   A ++ D+M  +G   D + ++   +   KG++    
Sbjct: 1084 GFSVSVSTYSVLIKGFFKRKKFVEAREIFDQMRRDGLAADKEIFDFFSDTKYKGKRPDTI 1143

Query: 368  SGLFNEMVKNENVLNHENCRAA 389
                +E++  EN L  E  R A
Sbjct: 1144 VDPIDEII--ENYLVDEQLREA 1163



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 70/162 (43%), Gaps = 6/162 (3%)

Query: 308 GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEA 367
           G+ PD   Y+ +I+ YC   E     KL+++M   G  P+  TY  +   L +  KL EA
Sbjct: 699 GYTPDVISYSTVINGYCRFGELDKVWKLIEKMKQKGLKPNSYTYGSIIGLLCRICKLAEA 758

Query: 368 SGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSE---TGNLL 424
              F+EM+    + +       V  +    D   A KF+    E H  D++    T   +
Sbjct: 759 EEAFSEMIGQGILPDTIVYTTLVDGFCKRGDIRAASKFF---YEMHSRDITPDVLTYTAI 815

Query: 425 VAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKA 466
           ++G C +  + EA K    M  +G++      ++L     KA
Sbjct: 816 ISGFCQIGDMVEAGKLFHEMLCRGLEPDIITFTELMNGYCKA 857


>gi|125541207|gb|EAY87602.1| hypothetical protein OsI_09013 [Oryza sativa Indica Group]
          Length = 555

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 98/423 (23%), Positives = 163/423 (38%), Gaps = 29/423 (6%)

Query: 47  ANTPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNL 106
           A   S   E  LD     ++   V  VL         A +FF W+++Q   +H    +N 
Sbjct: 92  AAGSSEGTEAALDALGAELTTPLVADVLHRLRYDEKLAFRFFVWASHQGGYEHEAATYND 151

Query: 107 VVDLLG----KNCLFDAMWDAIKSMKKENVLSLAT--FASVFSSYVVADRVKDAITTFDV 160
           V+D+L     K   F  + D +  MK+    S+       +  +Y               
Sbjct: 152 VIDILSGTRYKARQFGVLCDVLDHMKRRRTRSVPVDDLLGILRAYTEKHLTHLRKLAKKR 211

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDV 220
             +     +  ALN LL A C+ G   +A      V  ++  + +TY+IL  GW + RD 
Sbjct: 212 RVRMRTPPETDALNVLLDAFCKSGMVREAEAVFSRVKRKLLGNAETYSILFFGWCRARDP 271

Query: 221 ANAKKTFGEMVIEVGWDPDNV---PAYDSYLIT-LLKGCDGIYETVNSLKRMMERGCNPG 276
             A K   EM I++   P+N     A DS+    L+     ++E + +    +       
Sbjct: 272 KRAMKVLEEM-IQMKHTPENFTYNAAIDSFCSAGLVSEARDLFEFMRTEGSTISSPTAKT 330

Query: 277 MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLL 336
            +    A  +   GQ     E I  + + + G  PD   Y  +I      ++  AA  +L
Sbjct: 331 YSIMIAALAK--AGQMEECFELI--SEMRKCGCMPDVSTYKDLIEGMLLVDKLDAAYCVL 386

Query: 337 DEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVY--- 393
           DEM   G  PDI TYN   + L   +K  +A  L   M++        +C  +V  Y   
Sbjct: 387 DEMAKAGFPPDIVTYNCFLKVLCGLQKADDALELCERMIE-------AHCEPSVHTYNML 439

Query: 394 ----MDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
                +  +P  AI  W  M +  C    +T   ++ GL D     +A      +  +G+
Sbjct: 440 MVMFFEMREPDRAINIWIEMDKRGCHRAVDTYETMIDGLFDSGRTEDATTLLDEVINRGM 499

Query: 450 QVT 452
           +++
Sbjct: 500 KLS 502


>gi|357518651|ref|XP_003629614.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523636|gb|AET04090.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 592

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 88/376 (23%), Positives = 161/376 (42%), Gaps = 10/376 (2%)

Query: 80  HPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATF 138
           H   A+   +     L  K   +  N+V++ L    L    +  + +M K  +  S+ TF
Sbjct: 90  HYTTAISLVKEMHSSLGIKPDTFILNVVINSLCHLKLVAFGFSVLGTMLKLGLEPSVVTF 149

Query: 139 ASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDG 198
             + +   V   V  A+   D +E+ G + DV     L++ +C+ GKT +A  +LR ++ 
Sbjct: 150 TILINGLCVKGDVGRAVELVDHVEKTGYRSDVKTYGVLINGLCKMGKTSEAVGWLRKMEE 209

Query: 199 RI-KPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD- 256
           R   P+   Y+ +++G  K+  V+ A     EM  + G  P+ V    +Y   +   C+ 
Sbjct: 210 RNWNPNVVVYSTVMDGLCKDGLVSEALGLCLEMSGK-GIKPNLV----TYTCLIQGLCNF 264

Query: 257 GIYETVNSL-KRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHM 315
           G ++   SL   MM+ G  P +    +  +       +  A+ + G M+  +G  PD   
Sbjct: 265 GRWKEAGSLLDEMMKMGVMPDLQSLNILVDVLCKEGKIMQAKSVIGFMI-LVGEVPDVFT 323

Query: 316 YNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
           YN +I  YC  N+   A ++ + MV  G  PDI  Y  L     K + + +A  L +EM+
Sbjct: 324 YNSLIDRYCLQNQMDEATRVFELMVSRGCLPDIVAYTSLIHGWCKIKNINKAMHLLDEMI 383

Query: 376 KNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLP 435
           K     +       +  +     P  A + +  M +       +T  +++ GLC   +L 
Sbjct: 384 KVGFTPDVVTWTTLIGGFCQVGRPLAAKELFLNMHKYGQVPNLQTCAIILDGLCKSQLLS 443

Query: 436 EAVKYAKGMAEKGIQV 451
           EA+     M +  + +
Sbjct: 444 EALSLFHAMEKSNLDL 459



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 86/354 (24%), Positives = 142/354 (40%), Gaps = 40/354 (11%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           ++  +++V         V +A+     M   G K ++     L+  +C  G+  +A   L
Sbjct: 215 NVVVYSTVMDGLCKDGLVSEALGLCLEMSGKGIKPNLVTYTCLIQGLCNFGRWKEAGSLL 274

Query: 194 -RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
             ++   + PD  +  IL++   KE  +  AK   G M++ VG  PD V  Y+S LI   
Sbjct: 275 DEMMKMGVMPDLQSLNILVDVLCKEGKIMQAKSVIGFMIL-VGEVPD-VFTYNS-LIDRY 331

Query: 253 KGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD 312
              + + E     + M+ RGC P +  +          +N+  A  +   M+ ++GF PD
Sbjct: 332 CLQNQMDEATRVFELMVSRGCLPDIVAYTSLIHGWCKIKNINKAMHLLDEMI-KVGFTPD 390

Query: 313 THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFN 372
              +  +I  +C      AA +L   M   G  P++QT  I+ + L K + L EA  LF+
Sbjct: 391 VVTWTTLIGGFCQVGRPLAAKELFLNMHKYGQVPNLQTCAIILDGLCKSQLLSEALSLFH 450

Query: 373 EMVKNENVLN--------HENCRA-----AVRVYMDSDDPYVAIKFWKYMI--------- 410
            M K+   LN           C A     A+ ++       + I  + Y I         
Sbjct: 451 AMEKSNLDLNIVIYSIILDGMCSAGKLNTALELFSCLPAKGLQINVYAYTIMINGFAKQG 510

Query: 411 -------------ENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQV 451
                        EN C   S T N+ V GL     +  ++KY   M +KG  V
Sbjct: 511 LLDKAEDLLSNMEENGCMPDSCTYNVFVQGLVAEREIARSIKYLTMMRDKGFSV 564



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 59/269 (21%), Positives = 108/269 (40%), Gaps = 19/269 (7%)

Query: 109 DLLGKNCLFDAMWDAIKSMKKENVLSLA----------TFASVFSSYVVADRVKDAITTF 158
           DL   N L D +    K M+ ++V+             T+ S+   Y + +++ +A   F
Sbjct: 285 DLQSLNILVDVLCKEGKIMQAKSVIGFMILVGEVPDVFTYNSLIDRYCLQNQMDEATRVF 344

Query: 159 DVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKE 217
           ++M   GC  D+ A  SL+   C+      A   L  ++     PD  T+  L+ G+ + 
Sbjct: 345 ELMVSRGCLPDIVAYTSLIHGWCKIKNINKAMHLLDEMIKVGFTPDVVTWTTLIGGFCQV 404

Query: 218 RDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDG--IYETVNSLKRMMERGCNP 275
                AK+ F  M          VP   +  I L   C    + E ++    M +   + 
Sbjct: 405 GRPLAAKELFLNM-----HKYGQVPNLQTCAIILDGLCKSQLLSEALSLFHAMEKSNLDL 459

Query: 276 GMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKL 335
            +  + +  +   +   L  A  ++  +  + G + + + Y +MI+ +        A  L
Sbjct: 460 NIVIYSIILDGMCSAGKLNTALELFSCLPAK-GLQINVYAYTIMINGFAKQGLLDKAEDL 518

Query: 336 LDEMVYNGAFPDIQTYNILFEFLVKGRKL 364
           L  M  NG  PD  TYN+  + LV  R++
Sbjct: 519 LSNMEENGCMPDSCTYNVFVQGLVAEREI 547


>gi|413953163|gb|AFW85812.1| hypothetical protein ZEAMMB73_202457 [Zea mays]
          Length = 731

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 84/326 (25%), Positives = 142/326 (43%), Gaps = 41/326 (12%)

Query: 89  RWSAYQLNDKHSP--YAWNLVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASVFSSY 145
           R+    L+D  +P  Y +N++V  L            ++ M+      ++ T+ ++ +++
Sbjct: 176 RFFDSMLSDGVAPNVYTYNILVRALCGRGHRKEALSILRDMRGAGCGPNVVTYNTLVAAF 235

Query: 146 VVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDN 204
             A  V  A     +M + G K ++   NS+++ +C+ GK  DA + F  +V   + PD 
Sbjct: 236 FRAGEVDGAERLVGMMREGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMVREGLAPDG 295

Query: 205 DTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNS 264
            +Y  L+ G+ K      A   F EM  + G  PD V    + LI ++     +   V  
Sbjct: 296 VSYNTLVGGYCKAGCSHEALSVFAEMT-QKGIMPDVVTF--TSLIHVMCKAGNLERAVTL 352

Query: 265 LKRMMERGCNPG-MTFFKLAFEECLTG------QNLRGAE-------------FIWG-AM 303
           +++M ERG     +TF  L    C  G        +RG +              I G  M
Sbjct: 353 VRQMRERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMKQCRIKPSVVCYNALINGYCM 412

Query: 304 VGRI-------------GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQT 350
           VGR+             G +PD   Y+ +IS YC + +T +A +L  +M+  G  PD  T
Sbjct: 413 VGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAIT 472

Query: 351 YNILFEFLVKGRKLWEASGLFNEMVK 376
           Y+ L   L   ++L +A  LF  M+K
Sbjct: 473 YSSLIRVLCGEKRLSDAHVLFKNMIK 498



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 82/337 (24%), Positives = 140/337 (41%), Gaps = 29/337 (8%)

Query: 114 NCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFAL 173
            C  +A+    +  +K  +  + TF S+      A  ++ A+T    M + G + +    
Sbjct: 309 GCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLERAVTLVRQMRERGLQMNEVTF 368

Query: 174 NSLLSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVI 232
            +L+   C+ G   DA   +R +   RIKP    Y  L+ G+     +  A++   EM  
Sbjct: 369 TALIDGFCKKGFLDDALLAVRGMKQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEA 428

Query: 233 EVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQN 292
           + G  PD V  Y + +    K CD  +      ++M+E+G  P    +          + 
Sbjct: 429 K-GLKPD-VVTYSTIISAYCKNCD-THSAFELNQQMLEKGVLPDAITYSSLIRVLCGEKR 485

Query: 293 LRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYN 352
           L  A  ++  M+ ++G +PD   Y  +I  +C      +A+ L D+MV  G  PD+ TY+
Sbjct: 486 LSDAHVLFKNMI-KLGLQPDEFTYTSLIDGHCKEGNVESALSLHDKMVKAGVLPDVVTYS 544

Query: 353 ILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIEN 412
           +L   L K  +  EA  L  +       L HE             DP  A    KY    
Sbjct: 545 VLINGLSKSARAMEAQQLLFK-------LYHE-------------DPIPA--NTKYDALM 582

Query: 413 HCSDLSETGNL--LVAGLCDMHMLPEAVKYAKGMAEK 447
           HC   +E  ++  L+ G C   ++ EA K  + M ++
Sbjct: 583 HCCRKAELKSVLALLKGFCMKGLMNEADKVYQSMLDR 619



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 71/297 (23%), Positives = 114/297 (38%), Gaps = 46/297 (15%)

Query: 158 FDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEK 216
           FD M   G   +V+  N L+ A+C  G   +A   LR + G    P+  TY  L+  + +
Sbjct: 178 FDSMLSDGVAPNVYTYNILVRALCGRGHRKEALSILRDMRGAGCGPNVVTYNTLVAAFFR 237

Query: 217 ERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPG 276
             +V  A++  G M+ E G  P+ V                   T NS+   M   C  G
Sbjct: 238 AGEVDGAERLVG-MMREGGLKPNLV-------------------TFNSMVNGM---CKAG 274

Query: 277 MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLL 336
                           +  A  ++  MV R G  PD   YN ++  YC +  +  A+ + 
Sbjct: 275 ---------------KMEDARKVFDEMV-REGLAPDGVSYNTLVGGYCKAGCSHEALSVF 318

Query: 337 DEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDS 396
            EM   G  PD+ T+  L   + K   L  A  L  +M +    +N     A +  +   
Sbjct: 319 AEMTQKGIMPDVVTFTSLIHVMCKAGNLERAVTLVRQMRERGLQMNEVTFTALIDGFCKK 378

Query: 397 ---DDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQ 450
              DD  +A++  K   +          N L+ G C +  + EA +    M  KG++
Sbjct: 379 GFLDDALLAVRGMK---QCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLK 432


>gi|168028441|ref|XP_001766736.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162681945|gb|EDQ68367.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 560

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 75/310 (24%), Positives = 145/310 (46%), Gaps = 13/310 (4%)

Query: 70  VEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKK 129
           + +VLK      G A+KFF W+  Q   KH    +  ++ ++G+   F+A    ++ M++
Sbjct: 37  INEVLKHQ-KESGLALKFFDWAKEQEGYKHDVCTYTTMIGIMGRARNFEACSRLLQEMRR 95

Query: 130 ENVL-SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDG---K 185
           E     + T+  +  +Y  A+ + +A+  F  M++ GC  D     +L+    + G    
Sbjct: 96  EGCEPCVVTYNRLIHAYGRANFLGEAMRIFYQMQEEGCSPDRVTYCTLVDLHSKAGFHDN 155

Query: 186 TIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYD 245
            +D +Q  ++     +PD  TY++++    K   V+ A K F EMV E G+ P  V  Y+
Sbjct: 156 AMDMYQ--KMQQAGFQPDTFTYSVIIHCLGKAGKVSEALKLFEEMV-ERGFAPSLV-TYN 211

Query: 246 SYLITLLKGCDGIYETVNSL-KRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMV 304
             +I  L+   G Y     L   M + G +P    + +  E      +L+ AE ++  M 
Sbjct: 212 --IIIDLQAKSGNYVMAMKLYNDMQDAGFHPDRVTYSIMMEVLGQIGHLQEAELMFNEM- 268

Query: 305 GRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKL 364
            + G+ PD  +Y +M+ ++  +     A++   +M+ +G  P++Q  N L    ++ ++ 
Sbjct: 269 EQAGWVPDAPIYGVMVDMWGKARNAERALEWYQKMLDSGLTPNVQISNSLLGSYLRMQQF 328

Query: 365 WEASGLFNEM 374
             A G+   M
Sbjct: 329 DLAFGVIETM 338



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 89/211 (42%), Gaps = 15/211 (7%)

Query: 169 DVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFG 228
             F +N +L      G  +  + + +  +G  K D  TY  ++    + R+     +   
Sbjct: 33  SAFHINEVLKHQKESGLALKFFDWAKEQEG-YKHDVCTYTTMIGIMGRARNFEACSRLLQ 91

Query: 229 EMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECL 288
           EM  E G +P  V  Y+  LI      + + E +    +M E GC+P    +      C 
Sbjct: 92  EMRRE-GCEP-CVVTYNR-LIHAYGRANFLGEAMRIFYQMQEEGCSPDRVTY------CT 142

Query: 289 TGQNLRGAEFIWGAM-----VGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNG 343
                  A F   AM     + + GF+PDT  Y+++I     + +   A+KL +EMV  G
Sbjct: 143 LVDLHSKAGFHDNAMDMYQKMQQAGFQPDTFTYSVIIHCLGKAGKVSEALKLFEEMVERG 202

Query: 344 AFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
             P + TYNI+ +   K      A  L+N+M
Sbjct: 203 FAPSLVTYNIIIDLQAKSGNYVMAMKLYNDM 233


>gi|414874052|tpg|DAA52609.1| TPA: hypothetical protein ZEAMMB73_367214 [Zea mays]
          Length = 716

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 82/343 (23%), Positives = 149/343 (43%), Gaps = 15/343 (4%)

Query: 113 KNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVF 171
           K CL D M D    M  + +   + TF+ +  +Y     +  A+  F+ M  +G K DV 
Sbjct: 376 KGCLVD-MTDLFDLMLGDGIAPDIYTFSVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVV 434

Query: 172 ALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEM 230
              ++++A+CR GK  DA + F +++D  + PD   Y  L++G+     +  AK    E+
Sbjct: 435 TYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAK----EL 490

Query: 231 VIEV---GWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEE- 286
           ++E+   G   D V  + S +I  L     I +  N     +  G +P    + +  +  
Sbjct: 491 ILEIMNNGMRLDIV--FFSSIINNLCKLGRIMDAQNIFDLTVNVGQHPDAVVYSMLMDGY 548

Query: 287 CLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFP 346
           CL G+ +  A  ++ AMV   G  P+  +Y  +++ YC        + L  EM+  G  P
Sbjct: 549 CLVGK-MEKALRVFDAMVSA-GIEPNVVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKP 606

Query: 347 DIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFW 406
               YNI+ + L    +   A   F+EM ++   +N       +R +  +     AI  +
Sbjct: 607 STILYNIIIDGLFVAGRTVPAKVKFHEMTESGIAINKCTYNIVLRGFFKNRCFDEAIFLF 666

Query: 407 KYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
           K +   +      T N ++AG+     + EA      ++  G+
Sbjct: 667 KELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGL 709



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 76/303 (25%), Positives = 133/303 (43%), Gaps = 9/303 (2%)

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV--DGRI-KPDNDTYAILLEGWEKERD 219
           + GC  DVF+ + LL ++C  GK+  A   LR++   G +  PD   Y  +++ + KE D
Sbjct: 179 ELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYTTVIDCFFKEGD 238

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNP-GMT 278
           V  A   F EMV + G  PD V  Y S +  L K    + +    L++M+ +G  P   T
Sbjct: 239 VNKACDLFKEMV-QRGIPPDLV-TYSSVVHALCKA-RAMGKAEAFLRQMVNKGVLPDNWT 295

Query: 279 FFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDE 338
           +  L +    TGQ  + A  ++  M  R    PD    NM++   C   +   A  + D 
Sbjct: 296 YNNLIYGYSSTGQ-WKEAVRVFKEM-RRHSILPDVVTLNMLMGSLCKYGKIKEARDVFDT 353

Query: 339 MVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDD 398
           M   G  PD+ +Y I+         L + + LF+ M+ +    +       ++ Y +   
Sbjct: 354 MAMKGQNPDVFSYKIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFSVLIKAYANCGM 413

Query: 399 PYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSK 458
              A+  +  M ++       T   ++A LC +  + +A++    M ++G+    +A   
Sbjct: 414 LDKAMIIFNEMRDHGVKPDVVTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHC 473

Query: 459 LKQ 461
           L Q
Sbjct: 474 LIQ 476



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 66/248 (26%), Positives = 108/248 (43%), Gaps = 9/248 (3%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL--R 194
           T+A +      A R + A+  F  + + G + D+   N LL   C   +T +A   L  R
Sbjct: 117 TYAILMDCCTRAHRPELALAFFGQLLRTGLRVDIIIANHLLKGFCEAKRTDEALDILLHR 176

Query: 195 VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVG--WDPDNVPAYDSYLITLL 252
             +    PD  +Y+ILL+    +     A      M+ E G    PD V AY + +    
Sbjct: 177 TPELGCVPDVFSYSILLKSLCDQGKSGQADDLL-RMMAEGGAVCSPD-VVAYTTVIDCFF 234

Query: 253 KGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD 312
           K  D + +  +  K M++RG  P +  +          + +  AE     MV + G  PD
Sbjct: 235 KEGD-VNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMGKAEAFLRQMVNK-GVLPD 292

Query: 313 THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFN 372
              YN +I  Y  + +   A+++  EM  +   PD+ T N+L   L K  K+ EA  +F+
Sbjct: 293 NWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLNMLMGSLCKYGKIKEARDVFD 352

Query: 373 EM-VKNEN 379
            M +K +N
Sbjct: 353 TMAMKGQN 360



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 71/290 (24%), Positives = 120/290 (41%), Gaps = 17/290 (5%)

Query: 99  HSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSL------------ATFASVFSSYV 146
           H       V D+   + L  ++ D  KS + +++L +              + +V   + 
Sbjct: 175 HRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYTTVIDCFF 234

Query: 147 VADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGRIKPDND 205
               V  A   F  M Q G   D+   +S++ A+C+      A  FLR +V+  + PDN 
Sbjct: 235 KEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMGKAEAFLRQMVNKGVLPDNW 294

Query: 206 TYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSL 265
           TY  L+ G+        A + F EM       PD V    + L+  L     I E  +  
Sbjct: 295 TYNNLIYGYSSTGQWKEAVRVFKEMRRH-SILPDVVTL--NMLMGSLCKYGKIKEARDVF 351

Query: 266 KRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCY 325
             M  +G NP +  +K+      T   L     ++  M+G  G  PD + ++++I  Y  
Sbjct: 352 DTMAMKGQNPDVFSYKIMLNGYATKGCLVDMTDLFDLMLGD-GIAPDIYTFSVLIKAYAN 410

Query: 326 SNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
                 AM + +EM  +G  PD+ TY  +   L +  K+ +A   FN+M+
Sbjct: 411 CGMLDKAMIIFNEMRDHGVKPDVVTYTTVIAALCRIGKMDDAMEKFNQMI 460



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 66/288 (22%), Positives = 117/288 (40%), Gaps = 39/288 (13%)

Query: 125 KSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRD 183
           K M++ ++L  + T   +  S     ++K+A   FD M   G   DVF+   +L+     
Sbjct: 317 KEMRRHSILPDVVTLNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYKIMLNGYATK 376

Query: 184 GKTIDAWQFLRVVDG-RIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVP 242
           G  +D      ++ G  I PD  T+++L++ +     +  A   F EM  + G  PD V 
Sbjct: 377 GCLVDMTDLFDLMLGDGIAPDIYTFSVLIKAYANCGMLDKAMIIFNEMR-DHGVKPD-VV 434

Query: 243 AYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEE-CLTGQNLRGAEFIWG 301
            Y + +  L +    + + +    +M+++G  P    +    +  C  G  L+  E I  
Sbjct: 435 TYTTVIAALCR-IGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELILE 493

Query: 302 AM--------------------VGRI-------------GFRPDTHMYNMMISLYCYSNE 328
            M                    +GRI             G  PD  +Y+M++  YC   +
Sbjct: 494 IMNNGMRLDIVFFSSIINNLCKLGRIMDAQNIFDLTVNVGQHPDAVVYSMLMDGYCLVGK 553

Query: 329 TGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK 376
              A+++ D MV  G  P++  Y  L     K  ++ E   LF EM++
Sbjct: 554 MEKALRVFDAMVSAGIEPNVVVYGTLVNGYCKIGRIDEGLSLFREMLQ 601


>gi|147861320|emb|CAN83994.1| hypothetical protein VITISV_031191 [Vitis vinifera]
          Length = 559

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 80/305 (26%), Positives = 139/305 (45%), Gaps = 25/305 (8%)

Query: 77  SYSHPGPAVKFFRWSAYQLNDKHSP--YAWNLVVDLLGK-------NCLFDAMWDAIKSM 127
            Y   G   + FR   + + ++  P  + ++++++ L K       N LF  M D  + +
Sbjct: 269 GYCKSGNLDQGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEMCD--RGL 326

Query: 128 KKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTI 187
              +V    TF ++ + + V  R    +  +  M + G K DV   N+L++ +C+ G   
Sbjct: 327 VPNDV----TFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLR 382

Query: 188 DAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDS 246
           +A + +  +  R +KPD  TY +L++G  KE D+ +A +   EMV E G + DNV A+ +
Sbjct: 383 EAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESALEIRKEMVKE-GIELDNV-AFTA 440

Query: 247 YLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEE-CLTGQNLRGAEFIWGAMVG 305
            LI+       + E   +L+ M+E G  P    + +     C  G    G + +      
Sbjct: 441 -LISGFCREGQVIEAERTLREMLEAGIKPDDATYTMVIHGFCKKGDVKTGFKLLKEMQCD 499

Query: 306 RIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLW 365
             G  P    YN++++  C   +   A  LLD M+  G  PD  TYNIL E   +  + W
Sbjct: 500 --GHVPGVVTYNVLLNGLCKQGQMKNANMLLDAMLNLGVVPDDITYNILLE---RTLQAW 554

Query: 366 EASGL 370
           +  G 
Sbjct: 555 KQGGF 559



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 76/301 (25%), Positives = 122/301 (40%), Gaps = 42/301 (13%)

Query: 150 RVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYA 208
           ++ +A   F  + + G +  V + N+L++  C+ G     ++  R +++ R+ PD  TY+
Sbjct: 240 KINEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSGNLDQGFRLKRFMMENRVFPDVFTYS 299

Query: 209 ILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRM 268
           +L+ G  KE  + +A K F EM                        CD            
Sbjct: 300 VLINGLCKEGQLDDANKLFLEM------------------------CD------------ 323

Query: 269 MERGCNPG-MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSN 327
             RG  P  +TF  L    C+TG+   G E I+  M+ R G +PD   YN +I+  C   
Sbjct: 324 --RGLVPNDVTFTTLINGHCVTGRADLGME-IYQQML-RKGVKPDVITYNTLINGLCKVG 379

Query: 328 ETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCR 387
           +   A KL+ EM   G  PD  TY +L +   K   L  A  +  EMVK    L++    
Sbjct: 380 DLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESALEIRKEMVKEGIELDNVAFT 439

Query: 388 AAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEK 447
           A +  +        A +  + M+E        T  +++ G C    +    K  K M   
Sbjct: 440 ALISGFCREGQVIEAERTLREMLEAGIKPDDATYTMVIHGFCKKGDVKTGFKLLKEMQCD 499

Query: 448 G 448
           G
Sbjct: 500 G 500



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 90/432 (20%), Positives = 167/432 (38%), Gaps = 71/432 (16%)

Query: 37  PTIKTLCEIIANTPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPA--VKFFRWSAYQ 94
           P + T+ E I  +P+  +   L + L  ++   +  ++  +     P   + FF+W + Q
Sbjct: 37  PILTTISEAIKVSPTKPLHSSLKRILPSLTPNHLIDLINLNPHSLSPPSLLSFFKWLSTQ 96

Query: 95  LNDKHSPYAWNLVVDLLGKNCLF---DAMWDAIKSMKKENVLSLATFASVFSSYVVADRV 151
            + + S +++  +   L  + +     ++   + S K +N  S     SVF+S       
Sbjct: 97  HHFRLSIHSYCTMTHFLCTHKMLSEAQSLLQFVVSRKGKNSAS-----SVFTS------- 144

Query: 152 KDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILL 211
                   V+E  G        + L++A    G   DA Q  R+V    +  N       
Sbjct: 145 --------VLEARGTHQSNLVFSVLMNAYTDSGYFSDAIQCFRLV----RKHNLQIPFHS 192

Query: 212 EGWEKER----DVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKR 267
            G+  +R    ++ +    F E +++ G+ PD                      V     
Sbjct: 193 CGYLFDRLMKLNLTSPAWAFYEEILDCGYPPD----------------------VCKFNV 230

Query: 268 MMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSN 327
           +M R C                   +  A+ ++G  +G+ G RP    +N +I+ YC S 
Sbjct: 231 LMHRLCKE---------------HKINEAQLLFGE-IGKRGLRPTVVSFNTLINGYCKSG 274

Query: 328 ETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCR 387
                 +L   M+ N  FPD+ TY++L   L K  +L +A+ LF EM     V N     
Sbjct: 275 NLDQGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFT 334

Query: 388 AAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEK 447
             +  +  +    + ++ ++ M+         T N L+ GLC +  L EA K    M ++
Sbjct: 335 TLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQR 394

Query: 448 GIQVTPFALSKL 459
           G++   F  + L
Sbjct: 395 GLKPDKFTYTML 406


>gi|168014206|ref|XP_001759643.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162689182|gb|EDQ75555.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1043

 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 80/276 (28%), Positives = 119/276 (43%), Gaps = 8/276 (2%)

Query: 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDV 160
           + +N++V+ L K+   D     + SMK +N+L  L T+ S+      + R+++A   F  
Sbjct: 704 FVYNIMVNGLVKSNRVDEACKLVDSMKNQNILPDLFTYTSLLDGLGKSGRLEEAFNMFTK 763

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYAILLEGWEKERD 219
           M + G + DV A  SL+  + + GK   A    R +   R  PD  TY+ L++   KE  
Sbjct: 764 MTEEGHEPDVVAYTSLMDVLGKGGKLSHALIIFRAMAKKRCVPDVVTYSSLIDSLGKEGR 823

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSL-KRMMERGCNPGMT 278
           V  A   F E  I  G  P NV  Y S + +   G  G+ +    L + M  R C P + 
Sbjct: 824 VEEAYYFF-ENSISKGCTP-NVGVYSSLIDSF--GKKGMVDRALELFEEMQRRQCPPNIV 879

Query: 279 FFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDE 338
            +            L  AE +   M  ++G  PD   YN++I           A      
Sbjct: 880 TYNNLLSGLAKAGRLNVAEKLLEEM-EKVGCVPDLVTYNILIDGVGKMGMVDEAESYFKR 938

Query: 339 MVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
           M   G  PD+ T+  L E L K  KL EA  LF+ M
Sbjct: 939 MKEKGIVPDVITFTSLIESLGKVDKLLEACELFDSM 974



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 102/467 (21%), Positives = 177/467 (37%), Gaps = 82/467 (17%)

Query: 87  FFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKE-NVLSLATFASVFSSY 145
           FF W+  Q    H+   + L++  L      DA+   + +M KE + +S+    S+  ++
Sbjct: 168 FFTWAGQQDGYSHTVGTYTLMIKRLAGAQETDAVVQILTAMWKEGHRISMHLLTSLLRTF 227

Query: 146 VVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDA-WQFLRVVDGRIKPDN 204
              + V  A+  F+ M+ +GC       N +L  + + G    A   F ++   RI+PD 
Sbjct: 228 GSTNNVSGALEIFNQMKSFGCNPSTNMYNFVLELLVKGGFYHSAVIVFGKLGQFRIQPDA 287

Query: 205 DTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPD------------------------- 239
            T+ I +  + +   +  A +   EM I+ G DP                          
Sbjct: 288 QTFRIFVHSFNRSGRLDPAAEPIQEM-IKSGIDPGVHTFTVLIDALVKSGNIDEACKFFN 346

Query: 240 ---------NVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTG 290
                    NV  Y + L+  L     + E       M E  C+P      +A+   + G
Sbjct: 347 GMKNLRCSPNVVTYTT-LVNGLAKAGRLEEACEVFVEMKENNCSPD----AIAYNTLIDG 401

Query: 291 QNLRG----AEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFP 346
               G    A  ++  M  R G  P+   YN+MIS+   +     A +L  ++   GA P
Sbjct: 402 LGKAGEADMACGLFKEMKDR-GLVPNLRTYNIMISVLGKAGRQPEAWQLFHDLKEQGAVP 460

Query: 347 DIQTYNILFEFLVKGRKLWEASGLFNEMV-KNENVLNHENCRAAVRVYMDSDDPYV---- 401
           D+ TYN L + L KG ++ +   +  EMV K    +   +  A     ++  D  V    
Sbjct: 461 DVFTYNTLIDVLGKGGQMDKVLAIIKEMVEKGGECIISRDSNAGHEGTIEGADRTVEYPS 520

Query: 402 --------------------------AIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLP 435
                                     A+K  + M ++ C     T   LV GL     L 
Sbjct: 521 LGFKSLGEITYNTLMSAFIHNGHVDEAVKLLEVMKKHECIPTVVTYTTLVDGLGKAGRLD 580

Query: 436 EAVKYAKGMAEKGIQVTPFALSKLKQILIKARKE----AVYEELLKK 478
           EAV   + M ++G + +    S L     K  +E    ++++E+++K
Sbjct: 581 EAVSLLREMEKQGCEPSVVTYSSLMASFYKRDQEEESLSLFDEMVRK 627



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 91/380 (23%), Positives = 157/380 (41%), Gaps = 47/380 (12%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSL-ATFASVFSSYVVADRVKDAITTFDVM 161
            ++LV++ L K+   D   D    MK+E +  L   + ++ SS V  +++  A+  F+ +
Sbjct: 635 TYSLVINCLCKSDDVDQALDVFGRMKEEGMEPLLGNYKTLLSSLVKDEKIDFALQIFNEL 694

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDV 220
           ++     D F  N +++ + +  +  +A + +  +  + I PD  TY  LL+G  K   +
Sbjct: 695 QESSLVPDTFVYNIMVNGLVKSNRVDEACKLVDSMKNQNILPDLFTYTSLLDGLGKSGRL 754

Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFF 280
             A   F +M  E G +PD V AY S +  L KG   +   +   + M ++ C P +  +
Sbjct: 755 EEAFNMFTKMT-EEGHEPD-VVAYTSLMDVLGKGGK-LSHALIIFRAMAKKRCVPDVVTY 811

Query: 281 KLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMV 340
               +       +  A + +   + + G  P+  +Y+ +I  +        A++L +EM 
Sbjct: 812 SSLIDSLGKEGRVEEAYYFFENSISK-GCTPNVGVYSSLIDSFGKKGMVDRALELFEEMQ 870

Query: 341 YNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPY 400
                P+I TYN L   L K  +L  A  L  EM K         C   +  Y       
Sbjct: 871 RRQCPPNIVTYNNLLSGLAKAGRLNVAEKLLEEMEK-------VGCVPDLVTY------- 916

Query: 401 VAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLK 460
                                N+L+ G+  M M+ EA  Y K M EKGI       + L 
Sbjct: 917 ---------------------NILIDGVGKMGMVDEAESYFKRMKEKGIVPDVITFTSLI 955

Query: 461 QILIKARKEAVYEELLKKCK 480
           + L K  K      LL+ C+
Sbjct: 956 ESLGKVDK------LLEACE 969



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 73/308 (23%), Positives = 131/308 (42%), Gaps = 37/308 (12%)

Query: 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKEN------------------------------ 131
           + +N ++D+LGK    D +   IK M ++                               
Sbjct: 463 FTYNTLIDVLGKGGQMDKVLAIIKEMVEKGGECIISRDSNAGHEGTIEGADRTVEYPSLG 522

Query: 132 --VLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDA 189
              L   T+ ++ S+++    V +A+   +VM+++ C   V    +L+  + + G+  +A
Sbjct: 523 FKSLGEITYNTLMSAFIHNGHVDEAVKLLEVMKKHECIPTVVTYTTLVDGLGKAGRLDEA 582

Query: 190 WQFLRVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYL 248
              LR ++ +  +P   TY+ L+  + K      +   F EMV + G   D V  Y S +
Sbjct: 583 VSLLREMEKQGCEPSVVTYSSLMASFYKRDQEEESLSLFDEMVRK-GCVAD-VSTY-SLV 639

Query: 249 ITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIG 308
           I  L   D + + ++   RM E G  P +  +K      +  + +  A  I+  +     
Sbjct: 640 INCLCKSDDVDQALDVFGRMKEEGMEPLLGNYKTLLSSLVKDEKIDFALQIFNEL-QESS 698

Query: 309 FRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEAS 368
             PDT +YN+M++    SN    A KL+D M      PD+ TY  L + L K  +L EA 
Sbjct: 699 LVPDTFVYNIMVNGLVKSNRVDEACKLVDSMKNQNILPDLFTYTSLLDGLGKSGRLEEAF 758

Query: 369 GLFNEMVK 376
            +F +M +
Sbjct: 759 NMFTKMTE 766



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 90/397 (22%), Positives = 159/397 (40%), Gaps = 33/397 (8%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVM 161
           A+N ++D LGK    D      K MK   ++ +L T+  + S    A R  +A   F  +
Sbjct: 394 AYNTLIDGLGKAGEADMACGLFKEMKDRGLVPNLRTYNIMISVLGKAGRQPEAWQLFHDL 453

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR------IKPDNDTYAILLEGWE 215
           ++ G   DVF  N+L+  + + G+       ++ +  +       +  N  +   +EG +
Sbjct: 454 KEQGAVPDVFTYNTLIDVLGKGGQMDKVLAIIKEMVEKGGECIISRDSNAGHEGTIEGAD 513

Query: 216 KERDVANAK-KTFGEM--------------------VIEVGWDPDNVPAYDSY--LITLL 252
           +  +  +   K+ GE+                    ++EV    + +P   +Y  L+  L
Sbjct: 514 RTVEYPSLGFKSLGEITYNTLMSAFIHNGHVDEAVKLLEVMKKHECIPTVVTYTTLVDGL 573

Query: 253 KGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD 312
                + E V+ L+ M ++GC P +  +               +  ++  MV R G   D
Sbjct: 574 GKAGRLDEAVSLLREMEKQGCEPSVVTYSSLMASFYKRDQEEESLSLFDEMV-RKGCVAD 632

Query: 313 THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFN 372
              Y+++I+  C S++   A+ +   M   G  P +  Y  L   LVK  K+  A  +FN
Sbjct: 633 VSTYSLVINCLCKSDDVDQALDVFGRMKEEGMEPLLGNYKTLLSSLVKDEKIDFALQIFN 692

Query: 373 EMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMI-ENHCSDLSETGNLLVAGLCDM 431
           E+ ++  V +       V   + S+    A K    M  +N   DL    +LL  GL   
Sbjct: 693 ELQESSLVPDTFVYNIMVNGLVKSNRVDEACKLVDSMKNQNILPDLFTYTSLL-DGLGKS 751

Query: 432 HMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARK 468
             L EA      M E+G +    A + L  +L K  K
Sbjct: 752 GRLEEAFNMFTKMTEEGHEPDVVAYTSLMDVLGKGGK 788



 Score = 47.4 bits (111), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 53/224 (23%), Positives = 80/224 (35%), Gaps = 39/224 (17%)

Query: 257 GIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMY 316
           G  E  N +K     GCNP    +    E  + G     A  ++G + G+   +PD   +
Sbjct: 235 GALEIFNQMKSF---GCNPSTNMYNFVLELLVKGGFYHSAVIVFGKL-GQFRIQPDAQTF 290

Query: 317 NMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK 376
            + +  +  S     A + + EM+ +G  P + T+ +L + LVK       SG  +E   
Sbjct: 291 RIFVHSFNRSGRLDPAAEPIQEMIKSGIDPGVHTFTVLIDALVK-------SGNIDE--- 340

Query: 377 NENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPE 436
                                    A KF+  M    CS    T   LV GL     L E
Sbjct: 341 -------------------------ACKFFNGMKNLRCSPNVVTYTTLVNGLAKAGRLEE 375

Query: 437 AVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKCK 480
           A +    M E        A + L   L KA +  +   L K+ K
Sbjct: 376 ACEVFVEMKENNCSPDAIAYNTLIDGLGKAGEADMACGLFKEMK 419



 Score = 45.1 bits (105), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 54/112 (48%), Gaps = 6/112 (5%)

Query: 103  AWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVM 161
             +N+++D +GK  + D      K MK++ ++  + TF S+  S    D++ +A   FD M
Sbjct: 915  TYNILIDGVGKMGMVDEAESYFKRMKEKGIVPDVITFTSLIESLGKVDKLLEACELFDSM 974

Query: 162  EQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIK---PDNDTYAIL 210
            E+ G    V   N L+  + R GK  +A       + ++K   PD  T  I+
Sbjct: 975  EEEGYNPSVVTYNVLIDILGRAGKVHEAAMIFH--EMKVKGCMPDGITIGIM 1024


>gi|297851040|ref|XP_002893401.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297339243|gb|EFH69660.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 500

 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 101/479 (21%), Positives = 201/479 (41%), Gaps = 51/479 (10%)

Query: 22  KRSTFASHLDVPNLPPT----IKTLCEII---ANTPSPTVEDVLDKTLIRVSQETVEQVL 74
           K   F++ L    + P     +  +C I+    N+P   +   L  T  +++ E   QV 
Sbjct: 25  KHRFFSTELTPTTITPINQDHLLRVCTILYQQQNSPDSRLVSKLSSTKFQLTHEFFLQVC 84

Query: 75  KFSYSHPGPAVKFFRWSAYQLND-KHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL 133
                   P  +FF +S     D  H+    N ++ ++G +   D  W+  + + K  ++
Sbjct: 85  NNFPLSWRPVHRFFLYSQIHHPDFVHTSTTSNKMLAIIGNSRNMDLFWELAQEIGKHGLV 144

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           +  TF  V  +   A  +K  +  F +M  +G  ++V  +N  +  +C++ K ++  +F+
Sbjct: 145 NDKTFRIVLKTLASARELKKCVNFFHLMNDFGYLYNVQTMNRGVETLCKE-KLVEEAKFV 203

Query: 194 RVVDGR--IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITL 251
            V+  R  IKPD  TY  +++G+    D+  A K +  ++++ G++ D + A    + T 
Sbjct: 204 -VIKLREFIKPDEITYRTMIKGFCDVGDLIKAAKLWN-LMMDDGFEVD-IEAGKKIMETF 260

Query: 252 LKGCDGIYETVNSLKRMM--ERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGF 309
           LK     ++  + +  +M  +RGC+    F+++  +       +  A  ++  M  R G 
Sbjct: 261 LK--KNQFDEASKVFHVMVSKRGCDLDGCFYRVMIDWLCKNGRIDMARKVFDEMRER-GV 317

Query: 310 RPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASG 369
           + D   +  +I           A K + E V N   PDI  Y+ L + LVK ++  EA+ 
Sbjct: 318 QVDNLTWASIIYGLLVKRRVAEAYKTV-EAVEN---PDISIYHALIKGLVKIKRASEATE 373

Query: 370 LFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETG-------- 421
           +F +M++         C   +  Y+              +++ H       G        
Sbjct: 374 VFRKMIQ-------RGCEPIMHTYL-------------MLLQGHLGRRGRKGPDPLVNFD 413

Query: 422 NLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKCK 480
            + V G+       E  KY +   ++G++V+ F  SK            ++EE+ KK +
Sbjct: 414 TIFVGGMIKAGKRLETTKYVERTLKRGLEVSRFDYSKFLHCYSNEEGVFMFEEMAKKLR 472


>gi|357463937|ref|XP_003602250.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491298|gb|AES72501.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 946

 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 72/261 (27%), Positives = 119/261 (45%), Gaps = 11/261 (4%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASVFSSYVVADRVKDAITTFDVM 161
           A+N+V D L K    D +   ++ +K  ++   +  + +    Y +  +   A   F  M
Sbjct: 407 AYNIVFDSLFKLGKMDEVAGMLEDLKSMHIDFDIKHYTTFIKGYCLQGKPDKAYIIFKEM 466

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDV 220
           E+ G K DV A N L + +C +    +A   L  +D + +KP++ T+ I++EG+  E  +
Sbjct: 467 EEKGFKPDVVAYNVLAAGLCGNRHVSEAMDLLNYMDSQGVKPNSTTHKIIIEGFCSEGKI 526

Query: 221 ANAKKTFGEMVIE-VGWDPDNVPAY-DSYLITLLKGCDGIYETVNSLKRMMERGCNPGMT 278
             A+  F  M  E V      V  Y ++ LI   K  +  +E  N      E  C   ++
Sbjct: 527 EEAEGYFNSMKDESVEIYTAMVSGYCEADLIE--KSYELFHELSNRGDTAQESSCLKQLS 584

Query: 279 ---FFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKL 335
              + K+  E C  G N++ A  ++   +GR GF PD   Y +MI  YC  N    A  L
Sbjct: 585 KVLYSKVLAELCQKG-NMQRARSLFDFFLGR-GFTPDVVTYTIMIKSYCTMNCLQEAHDL 642

Query: 336 LDEMVYNGAFPDIQTYNILFE 356
             +M   G  PD+ TY +L +
Sbjct: 643 FQDMKSRGIKPDVITYTVLLD 663



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 76/304 (25%), Positives = 133/304 (43%), Gaps = 18/304 (5%)

Query: 100 SPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASVFSSYVVADRVKDAITTF 158
           + Y +   ++ L  N   D  +D ++++++ N  + +  + +V   +    ++  A+  F
Sbjct: 264 NSYCYAAYIEGLCNNHQSDLGYDLLRALRENNAPIDVYAYTAVIRGFCNEMKLDKAMQVF 323

Query: 159 DVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR--VVDGRIKPDNDTYAILLEGWEK 216
             ME      D    +SL+   C+    + A       ++ G IK +    + +L  + +
Sbjct: 324 YDMEWQRLVPDCHVYSSLICGYCKTHDLVKALDLYEDMILKG-IKTNCVIVSCILHCFAE 382

Query: 217 ERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLK--GCDGIYETVNSLKRM-MERGC 273
             + +    TF E V + G   D V AY+    +L K    D +   +  LK M ++   
Sbjct: 383 MGEDSRVVDTFKE-VKQSGVFLDGV-AYNIVFDSLFKLGKMDEVAGMLEDLKSMHIDFDI 440

Query: 274 NPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAM 333
               TF K     CL G+  + A  I+  M  + GF+PD   YN++ +  C +     AM
Sbjct: 441 KHYTTFIK---GYCLQGKPDK-AYIIFKEMEEK-GFKPDVVAYNVLAAGLCGNRHVSEAM 495

Query: 334 KLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVY 393
            LL+ M   G  P+  T+ I+ E      K+ EA G FN M K+E+V   E   A V  Y
Sbjct: 496 DLLNYMDSQGVKPNSTTHKIIIEGFCSEGKIEEAEGYFNSM-KDESV---EIYTAMVSGY 551

Query: 394 MDSD 397
            ++D
Sbjct: 552 CEAD 555



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 82/381 (21%), Positives = 152/381 (39%), Gaps = 58/381 (15%)

Query: 116 LFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVME--QYGCKHDVFAL 173
           LF+ + + + ++K +N   L  F     + V  +   DAI    + +  ++G   ++FA 
Sbjct: 139 LFEKLLEGV-NVKDKNHYLLRAFVGFVKACVGLNMFDDAIDFMFMFQIRRFGILPNIFAC 197

Query: 174 NSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGW-EKERDVANAKKTFGEMV 231
           N L++ + +  +   A++ F R+    + P++ TYAI+++    K  D+  A   F EM 
Sbjct: 198 NFLINRLVKCDQVNMAFEIFDRIKSLGLCPNHHTYAIIIKALGTKGGDLKQASGVFDEMK 257

Query: 232 IEVGWDPDNVPAYDSYLITLLKG--CDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLT 289
            E G  P N   Y +Y+  L      D  Y+ + +L+   E      +  +         
Sbjct: 258 -EAGVTP-NSYCYAAYIEGLCNNHQSDLGYDLLRALR---ENNAPIDVYAYTAVIRGFCN 312

Query: 290 GQNLRGA-----EFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVY--- 341
              L  A     +  W  +V      PD H+Y+ +I  YC +++   A+ L ++M+    
Sbjct: 313 EMKLDKAMQVFYDMEWQRLV------PDCHVYSSLICGYCKTHDLVKALDLYEDMILKGI 366

Query: 342 --------------------------------NGAFPDIQTYNILFEFLVKGRKLWEASG 369
                                           +G F D   YNI+F+ L K  K+ E +G
Sbjct: 367 KTNCVIVSCILHCFAEMGEDSRVVDTFKEVKQSGVFLDGVAYNIVFDSLFKLGKMDEVAG 426

Query: 370 LFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLC 429
           +  ++       + ++    ++ Y     P  A   +K M E          N+L AGLC
Sbjct: 427 MLEDLKSMHIDFDIKHYTTFIKGYCLQGKPDKAYIIFKEMEEKGFKPDVVAYNVLAAGLC 486

Query: 430 DMHMLPEAVKYAKGMAEKGIQ 450
               + EA+     M  +G++
Sbjct: 487 GNRHVSEAMDLLNYMDSQGVK 507



 Score = 46.2 bits (108), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 63/285 (22%), Positives = 112/285 (39%), Gaps = 40/285 (14%)

Query: 133 LSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQF 192
           LS   ++ V +       ++ A + FD     G   DV     ++ + C      +A   
Sbjct: 583 LSKVLYSKVLAELCQKGNMQRARSLFDFFLGRGFTPDVVTYTIMIKSYCTMNCLQEAHDL 642

Query: 193 LRVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITL 251
            + +  R IKPD  TY +LL+G  K+   A +K+ F     + G                
Sbjct: 643 FQDMKSRGIKPDVITYTVLLDGKSKQ---ARSKEHFSS---QHG---------------- 680

Query: 252 LKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRP 311
            KG D  Y+     + M +R  +P +  + +  +  +   N   A  ++  ++ R G  P
Sbjct: 681 -KGKDAPYDVSTIWRDMKDREVSPDVVIYTVLIDGHIKVDNFEDAIRLFNEVMKR-GLEP 738

Query: 312 DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKL-WEASGL 370
           D   Y  + S    S  +  A+ L +EM   G  P +     + + ++K RKL +++S  
Sbjct: 739 DNVTYTALFSGLLNSGNSEIAVTLYNEMSSKGMTPPLH----INQRILKVRKLQFQSSTD 794

Query: 371 FNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCS 415
            N   K  +   H+N + A        D     K  + ++E H S
Sbjct: 795 INAAKKVTD--KHQNSKDA--------DGAACFKRRRVLMEKHAS 829


>gi|224138618|ref|XP_002322859.1| predicted protein [Populus trichocarpa]
 gi|222867489|gb|EEF04620.1| predicted protein [Populus trichocarpa]
          Length = 502

 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 88/412 (21%), Positives = 182/412 (44%), Gaps = 45/412 (10%)

Query: 83  PAVKFFRWSAYQLNDK--HSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFAS 140
           P  +FF+++      +  H+  + N ++D+ G++   D +W A++ M K  +++  TF  
Sbjct: 87  PVHRFFQYTQQMPCSRFTHTSVSLNKMLDIFGRSRNLDLLWGAVQEMAKRGLVNDKTFII 146

Query: 141 VFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQF--LRVVDG 198
           V  +   A  +K     F  M ++GC++ V  LN ++  +C+ GK ++  +F  L++ D 
Sbjct: 147 VLKALASARELKKCAEFFHFMNEHGCEYRVERLNKVVENLCK-GKLVEEAKFVVLKLKDW 205

Query: 199 RIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGI 258
            I+PD  TY  L++G+    ++  A K +  MV E   +P+ +  ++  + TL K  +  
Sbjct: 206 -IRPDGVTYGWLVKGFCDVGELIEASKIWNLMVDE-SIEPE-IEVFEKMMETLFKR-NEY 261

Query: 259 YETVNSLKRM-MERGCNPGMTFFKLAFE-ECLTGQNLRGAEFIWGAMVGRIGFRPDTHMY 316
            E +   + M + R  +  ++ ++L  +  C  G+ ++ A+ ++  M  R G + D    
Sbjct: 262 DEALKVFQTMRVNRMDDLALSTYRLVIDWMCRKGKVVQ-AQMVFDEMRQR-GIQADNSTL 319

Query: 317 NMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK 376
             ++           A K+++ +       DI  Y+ L + LV+ R+  EA+ +F EM+ 
Sbjct: 320 GSLVYGLLTRGRHAEAHKVVERIEKT----DISVYHGLIKGLVRSRRASEATQVFREMI- 374

Query: 377 NENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETG--------NLLVAGL 428
                 +  C   +  Y+              +++ H       G        ++ V GL
Sbjct: 375 ------NRGCEPTMHTYI-------------MLLQGHLGKRGRKGPDPLVNFESIFVGGL 415

Query: 429 CDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKCK 480
                  EA KY +   +  ++V  F  +K            +++E+ KK +
Sbjct: 416 IKAGKSLEATKYVERTMKGSLEVPRFDYNKFLHYYSSEEGVVMFKEVGKKLR 467


>gi|225452992|ref|XP_002263038.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 644

 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/251 (26%), Positives = 120/251 (47%), Gaps = 11/251 (4%)

Query: 136 ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRV 195
           A+F ++     +  ++ +A+  FD M   G + DV    +L++ +C+ G T  A + LR 
Sbjct: 145 ASFTTLIKGLCLEGQIGEALHLFDKMIWEGFQPDVVIYATLINGLCKTGHTSAAIRLLRS 204

Query: 196 VD-GRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG 254
           ++ G  +PD   Y  L+    K+R    A   F EM+ + G  P N+   +S +  L   
Sbjct: 205 MEKGNCQPDVVVYGTLIHSLCKDRQQTQAFNLFSEMITK-GISP-NIVTCNSLVYAL--- 259

Query: 255 CD-GIYETVNSL-KRMMERGCNP-GMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRP 311
           C+ G ++ VN+L   M++    P  ++   +    C  G   +  + +   M+ + G  P
Sbjct: 260 CNLGEWKHVNTLLNEMVDSKIMPNAISLTTVVDALCKEGMVAQAHDVV--DMMFQSGVEP 317

Query: 312 DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLF 371
           D   Y  +I  +C  +E   A+K+ D MV+ G  P++ +YN L     K  ++ +A  LF
Sbjct: 318 DVVTYTALIDGHCLRSEMDEAVKVFDMMVHKGCAPNVFSYNTLINGYCKIERMDKAMYLF 377

Query: 372 NEMVKNENVLN 382
            EM + + + N
Sbjct: 378 EEMCRQKLIPN 388



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 87/342 (25%), Positives = 142/342 (41%), Gaps = 47/342 (13%)

Query: 95  LNDKHSPYAWNL--VVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRV 151
           ++ K  P A +L  VVD L K  +     D +  M +  V   + T+ ++   + +   +
Sbjct: 276 VDSKIMPNAISLTTVVDALCKEGMVAQAHDVVDMMFQSGVEPDVVTYTALIDGHCLRSEM 335

Query: 152 KDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDA-WQFLRVVDGRIKPDNDTYAIL 210
            +A+  FD+M   GC  +VF+ N+L++  C+  +   A + F  +   ++ P+  TY  L
Sbjct: 336 DEAVKVFDMMVHKGCAPNVFSYNTLINGYCKIERMDKAMYLFEEMCRQKLIPNTVTYNTL 395

Query: 211 LEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMME 270
           + G      + +A   F EMV   G  PD V  Y   L  L K C         L + M 
Sbjct: 396 IHGLCHVGRLQDAIALFREMV-ACGQIPDLV-TYRILLDYLCKNC--------HLDKAM- 444

Query: 271 RGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETG 330
                       A  + + G NL                 PD  +Y ++I   C + E  
Sbjct: 445 ------------ALLKAIEGSNLD----------------PDIQIYTIVIDGMCRAGELE 476

Query: 331 AAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENC--RA 388
            A  L   +   G  P++ TYNI+   L K   L EA+ LF EM  +EN  + + C    
Sbjct: 477 DARDLFSNLSSKGLKPNVWTYNIMTHGLCKRGLLDEATKLFMEM--DENACSADGCTYNT 534

Query: 389 AVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCD 430
             + ++ +++   AI+  + M+    S    T  LLV  L D
Sbjct: 535 ITQGFLRNNETSRAIQLLEEMLARGFSCDVSTTTLLVGMLSD 576



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 83/187 (44%), Gaps = 3/187 (1%)

Query: 265 LKRMMERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLY 323
           L ++++ GC P   +F  L    CL GQ +  A  ++  M+   GF+PD  +Y  +I+  
Sbjct: 132 LAKILKLGCQPDTASFTTLIKGLCLEGQ-IGEALHLFDKMIWE-GFQPDVVIYATLINGL 189

Query: 324 CYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNH 383
           C +  T AA++LL  M      PD+  Y  L   L K R+  +A  LF+EM+      N 
Sbjct: 190 CKTGHTSAAIRLLRSMEKGNCQPDVVVYGTLIHSLCKDRQQTQAFNLFSEMITKGISPNI 249

Query: 384 ENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKG 443
             C + V    +  +          M+++     + +   +V  LC   M+ +A      
Sbjct: 250 VTCNSLVYALCNLGEWKHVNTLLNEMVDSKIMPNAISLTTVVDALCKEGMVAQAHDVVDM 309

Query: 444 MAEKGIQ 450
           M + G++
Sbjct: 310 MFQSGVE 316



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 80/383 (20%), Positives = 135/383 (35%), Gaps = 50/383 (13%)

Query: 81  PGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFAS 140
           PGP        +  L+  H+ +        L  N L DA+    + +      S+  FA 
Sbjct: 24  PGPGTGMLSIPSPFLSLLHNRFRSKY----LHFNTLDDALSSFNRMLHMHPPPSIVDFAK 79

Query: 141 VFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRI 200
           + +S     R    ++    M+ +G  H+V+ LN L+++ C   +               
Sbjct: 80  ILTSITKVKRYSTVLSLSRKMDSFGIPHNVYTLNVLINSFCHLNRV-------------- 125

Query: 201 KPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC---DG 257
              N  +++L +                  ++++G  PD      +   TL+KG      
Sbjct: 126 ---NFAFSVLAK------------------ILKLGCQPDT-----ASFTTLIKGLCLEGQ 159

Query: 258 IYETVNSLKRMMERGCNPGMTFF-KLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMY 316
           I E ++   +M+  G  P +  +  L    C TG        +     G    +PD  +Y
Sbjct: 160 IGEALHLFDKMIWEGFQPDVVIYATLINGLCKTGHTSAAIRLLRSMEKGNC--QPDVVVY 217

Query: 317 NMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK 376
             +I   C   +   A  L  EM+  G  P+I T N L   L    +    + L NEMV 
Sbjct: 218 GTLIHSLCKDRQQTQAFNLFSEMITKGISPNIVTCNSLVYALCNLGEWKHVNTLLNEMVD 277

Query: 377 NENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPE 436
           ++ + N  +    V           A      M ++       T   L+ G C    + E
Sbjct: 278 SKIMPNAISLTTVVDALCKEGMVAQAHDVVDMMFQSGVEPDVVTYTALIDGHCLRSEMDE 337

Query: 437 AVKYAKGMAEKGIQVTPFALSKL 459
           AVK    M  KG     F+ + L
Sbjct: 338 AVKVFDMMVHKGCAPNVFSYNTL 360


>gi|147772266|emb|CAN67349.1| hypothetical protein VITISV_018089 [Vitis vinifera]
          Length = 483

 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 95/351 (27%), Positives = 153/351 (43%), Gaps = 14/351 (3%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           S   F S+F +Y    ++++AI  F  M+ YG    V + N+ +SA     +   A  F 
Sbjct: 110 SPCVFDSLFKTYAQMKKLRNAIDVFCQMKDYGFLPRVESCNAYISASISLQRGDIALTFY 169

Query: 194 RVVDG-RIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
           R +   RI P+  T  +++  + K   +  A + F +M   +G+ P  + +Y+    TL+
Sbjct: 170 REMQRYRISPNVYTLNMVMCAFCKWGKLEKAIEVFKKMET-MGFSP-TITSYN----TLI 223

Query: 253 KG-CD-GIYETVNSLKRMMER-GCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGF 309
            G C+ G+  +   LK +ME+ G  P    F         G  L  A  I+  M      
Sbjct: 224 AGYCNKGLLNSGMKLKILMEKNGVRPDDVTFNTLINGFCRGGKLHEANKIFSEMKAN-DV 282

Query: 310 RPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASG 369
            P+T  YN +I+ Y     +    +L DEM+ NG   DI TYN L   L    +  +A+ 
Sbjct: 283 VPNTITYNTLINGYSQVGNSEMGGRLHDEMLRNGIKADILTYNALILGLCMEGRTKKAAY 342

Query: 370 LFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLC 429
           L  E+ +   V N     A +       +   A + +K MI + C     T  +L++  C
Sbjct: 343 LVKELDRENLVPNSSTFSALITGQCVRKNSERAFQLYKSMIRSGCHPNYHTFKMLISTFC 402

Query: 430 DMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKCK 480
                  AV+  + M+E+ I      LS+L + L  + KE   E  LK CK
Sbjct: 403 KNEDFDGAVEVVREMSERSIAPDSDTLSELCRGLWLSGKE---ELALKLCK 450


>gi|255570422|ref|XP_002526170.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534547|gb|EEF36246.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 504

 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 78/275 (28%), Positives = 122/275 (44%), Gaps = 41/275 (14%)

Query: 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDV 160
           + + LV+D L K+ L        + M    +  ++  ++S+ +      ++++A+  FD 
Sbjct: 80  FTYGLVIDSLCKDGLAIKGLKMFREMINMGICPNVIVYSSLINGLCRVGKLREAVNLFDE 139

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERD 219
           M   G K +V   NSL+ A CR G   +A + F ++V   I PD  T+  L++   K+  
Sbjct: 140 MVSQGIKANVITYNSLIHASCRFGLWKEATRTFSQMVGEGILPDVVTFTTLIDHLSKKGK 199

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTF 279
           V  A K F E++I+ G  P N+  Y+S L              N L              
Sbjct: 200 VQEAYKIF-ELMIKQGEAP-NIVTYNSLL--------------NGL-------------- 229

Query: 280 FKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEM 339
                  CL  Q +  A  ++  MV R G + D   YN +I+ YC S +T  AM L  +M
Sbjct: 230 -------CLHHQ-MDHAVRLFEVMVER-GIKIDVISYNTLINGYCTSGKTEEAMTLFRKM 280

Query: 340 VYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
            Y    P I TY IL + L +  ++  A  LFN M
Sbjct: 281 QYEELTPSITTYTILLKALYQNGRIRTAKELFNNM 315



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 72/291 (24%), Positives = 130/291 (44%), Gaps = 42/291 (14%)

Query: 127 MKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKT 186
           +K+    ++ T+ S+ +   +  ++  A+  F+VM + G K DV + N+L++  C  GKT
Sbjct: 211 IKQGEAPNIVTYNSLLNGLCLHHQMDHAVRLFEVMVERGIKIDVISYNTLINGYCTSGKT 270

Query: 187 IDAWQFLRVVD-GRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYD 245
            +A    R +    + P   TY ILL+   +   +  AK+ F  M I         P+ D
Sbjct: 271 EEAMTLFRKMQYEELTPSITTYTILLKALYQNGRIRTAKELFNNMQI-----CGQSPSLD 325

Query: 246 SYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECL-TGQNLRGAEFIWGAMV 304
           +Y + L    DG          + + GC           EE +   ++L+          
Sbjct: 326 TYTVLL----DG----------LCKNGC----------IEEAIDVFRSLKS--------- 352

Query: 305 GRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKL 364
             I ++P   +Y+++I     +    +AM++ DE+   G  P+I TYNI+   L K  KL
Sbjct: 353 --IKYKPSIRIYSILIGGMFQARRWESAMEIFDEIPTVGLVPNIVTYNIMINGLCKEGKL 410

Query: 365 WEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCS 415
            EA  LF +M ++    +  +    +R ++  +    A++F K M E + S
Sbjct: 411 LEAERLFVQMEESGCEQDEISFNFIIRGFLQENQVQKAMEFLKRMREKNFS 461



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 69/298 (23%), Positives = 122/298 (40%), Gaps = 44/298 (14%)

Query: 165 GCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDVANA 223
           G + ++  +++L+  +C +GK +DA + F ++     + D   Y  L+    K R    A
Sbjct: 4   GYQPNLVTVSTLVKGMCFEGKVMDALELFDKMTRSGFQGDILLYGYLINALRKTRQARRA 63

Query: 224 KKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGI-YETVNSLKRMMERGCNPGMTFFK- 281
            +    M+ E+     N   Y   + +L K  DG+  + +   + M+  G  P +  +  
Sbjct: 64  VELHRRMLSEIC--SGNFFTYGLVIDSLCK--DGLAIKGLKMFREMINMGICPNVIVYSS 119

Query: 282 LAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVY 341
           L    C  G+ LR A  ++  MV + G + +   YN +I   C       A +   +MV 
Sbjct: 120 LINGLCRVGK-LREAVNLFDEMVSQ-GIKANVITYNSLIHASCRFGLWKEATRTFSQMVG 177

Query: 342 NGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYV 401
            G  PD+ T+  L + L K  K+ EA  +F  M+K                    + P +
Sbjct: 178 EGILPDVVTFTTLIDHLSKKGKVQEAYKIFELMIK------------------QGEAPNI 219

Query: 402 AIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKL 459
                             T N L+ GLC  H +  AV+  + M E+GI++   + + L
Sbjct: 220 V-----------------TYNSLLNGLCLHHQMDHAVRLFEVMVERGIKIDVISYNTL 260



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 66/245 (26%), Positives = 105/245 (42%), Gaps = 7/245 (2%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           +L T +++        +V DA+  FD M + G + D+     L++A+ +  +   A +  
Sbjct: 8   NLVTVSTLVKGMCFEGKVMDALELFDKMTRSGFQGDILLYGYLINALRKTRQARRAVELH 67

Query: 194 RVVDGRIKPDN-DTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
           R +   I   N  TY ++++   K+       K F EM I +G  P NV  Y S LI  L
Sbjct: 68  RRMLSEICSGNFFTYGLVIDSLCKDGLAIKGLKMFREM-INMGICP-NVIVYSS-LINGL 124

Query: 253 KGCDGIYETVNSLKRMMERGCNPG-MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRP 311
                + E VN    M+ +G     +T+  L    C  G   + A   +  MVG  G  P
Sbjct: 125 CRVGKLREAVNLFDEMVSQGIKANVITYNSLIHASCRFGL-WKEATRTFSQMVGE-GILP 182

Query: 312 DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLF 371
           D   +  +I       +   A K+ + M+  G  P+I TYN L   L    ++  A  LF
Sbjct: 183 DVVTFTTLIDHLSKKGKVQEAYKIFELMIKQGEAPNIVTYNSLLNGLCLHHQMDHAVRLF 242

Query: 372 NEMVK 376
             MV+
Sbjct: 243 EVMVE 247


>gi|224092696|ref|XP_002309701.1| predicted protein [Populus trichocarpa]
 gi|222855677|gb|EEE93224.1| predicted protein [Populus trichocarpa]
          Length = 597

 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 82/349 (23%), Positives = 144/349 (41%), Gaps = 6/349 (1%)

Query: 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDV 160
           Y +N +++ L K     A    +K M++     ++ T++++  S      V +A+  F  
Sbjct: 199 YTYNTIINGLCKIGETAAAAGLLKKMEEAGCQPNMVTYSTLIDSLCRDRLVNEALDIFSY 258

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERD 219
           M+  G   D+F   SL+  +C+  +  +A   L  +    I PD  T+ +L++ + KE  
Sbjct: 259 MKAKGISPDIFTYTSLIQGLCKFSRWKEASALLNEMTSLNIMPDIVTFNVLVDTFCKEGK 318

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTF 279
           V+ A      M  E+G +P NV  Y S +       D + E       M+ +GC P +  
Sbjct: 319 VSEALGVLKTMT-EMGVEP-NVVTYSSLMYGYSLWTD-VVEARKLFHVMITKGCKPNIFS 375

Query: 280 FKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEM 339
           + +        + +  A  ++  M+ + G  P+   YN +I  +C   +   A  L   M
Sbjct: 376 YNILINGYCKAKRIDEAMQLFNEMIHQ-GLTPNNVSYNTLIHGFCQLGKLREAQDLFRNM 434

Query: 340 VYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDP 399
             NG  PD+ TY+IL +   K   L +A  LF  M       N       V     S + 
Sbjct: 435 CTNGNLPDLFTYSILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYTILVHAMCKSGNH 494

Query: 400 YVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448
             A K +  +         +    ++ GLC   +L EA++  + M   G
Sbjct: 495 KDARKLFSELFVQGLQPHVQLYTTIINGLCKEGLLDEALEAFRNMEADG 543



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/283 (24%), Positives = 123/283 (43%), Gaps = 40/283 (14%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           ++ TF ++ +          A+  FD M   GC+ DV+  N++++ +C+ G+T  A   L
Sbjct: 162 TIVTFTTLINGLCKVGEFAQAVELFDDMVAKGCQPDVYTYNTIINGLCKIGETAAAAGLL 221

Query: 194 RVV-DGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
           + + +   +P+  TY+ L++   ++R V  A   F  M  + G  PD +  Y S +  L 
Sbjct: 222 KKMEEAGCQPNMVTYSTLIDSLCRDRLVNEALDIFSYMKAK-GISPD-IFTYTSLIQGLC 279

Query: 253 KGC----------------------------------DGIYETVNSLKRMMERGCNPG-M 277
           K                                      + E +  LK M E G  P  +
Sbjct: 280 KFSRWKEASALLNEMTSLNIMPDIVTFNVLVDTFCKEGKVSEALGVLKTMTEMGVEPNVV 339

Query: 278 TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLD 337
           T+  L +   L   ++  A  ++  M+ + G +P+   YN++I+ YC +     AM+L +
Sbjct: 340 TYSSLMYGYSL-WTDVVEARKLFHVMITK-GCKPNIFSYNILINGYCKAKRIDEAMQLFN 397

Query: 338 EMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENV 380
           EM++ G  P+  +YN L     +  KL EA  LF  M  N N+
Sbjct: 398 EMIHQGLTPNNVSYNTLIHGFCQLGKLREAQDLFRNMCTNGNL 440



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 54/203 (26%), Positives = 87/203 (42%), Gaps = 17/203 (8%)

Query: 265 LKRMMERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLY 323
           L ++++ G  P + TF  L    C  G+  +  E ++  MV + G +PD + YN +I+  
Sbjct: 151 LAKVIKLGLQPTIVTFTTLINGLCKVGEFAQAVE-LFDDMVAK-GCQPDVYTYNTIINGL 208

Query: 324 CYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNH 383
           C   ET AA  LL +M   G  P++ TY+ L + L + R + EA  +F+ M         
Sbjct: 209 CKIGETAAAAGLLKKMEEAGCQPNMVTYSTLIDSLCRDRLVNEALDIFSYM-------KA 261

Query: 384 ENCRAAVRVYMDSDDPYVAIKFWK--YMIENHCSDLS-----ETGNLLVAGLCDMHMLPE 436
           +     +  Y            WK    + N  + L+      T N+LV   C    + E
Sbjct: 262 KGISPDIFTYTSLIQGLCKFSRWKEASALLNEMTSLNIMPDIVTFNVLVDTFCKEGKVSE 321

Query: 437 AVKYAKGMAEKGIQVTPFALSKL 459
           A+   K M E G++      S L
Sbjct: 322 ALGVLKTMTEMGVEPNVVTYSSL 344



 Score = 43.1 bits (100), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 39/166 (23%), Positives = 65/166 (39%), Gaps = 14/166 (8%)

Query: 307 IGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWE 366
           +G  P+ +  ++ ++ +C          +L +++  G  P I T+  L   L K  +  +
Sbjct: 122 VGLSPNIYTLSIFMNCFCQLQRVDLGFSVLAKVIKLGLQPTIVTFTTLINGLCKVGEFAQ 181

Query: 367 ASGLFNEMVKNENVLNHENCRAAVRVY-------MDSDDPYVAIKFWKYMIENHCSDLSE 419
           A  LF++MV        + C+  V  Y           +   A    K M E  C     
Sbjct: 182 AVELFDDMVA-------KGCQPDVYTYNTIINGLCKIGETAAAAGLLKKMEEAGCQPNMV 234

Query: 420 TGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIK 465
           T + L+  LC   ++ EA+     M  KGI    F  + L Q L K
Sbjct: 235 TYSTLIDSLCRDRLVNEALDIFSYMKAKGISPDIFTYTSLIQGLCK 280


>gi|356532720|ref|XP_003534919.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g22470, mitochondrial-like [Glycine max]
          Length = 468

 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 85/343 (24%), Positives = 145/343 (42%), Gaps = 44/343 (12%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           T+ ++     +   VK  +   D +     + +  +  +LL+ +C+ G+T  A + LR++
Sbjct: 82  TWTTLMKGLCLKGEVKKLLHFHDKVVAQAFQTNQVSYGTLLNGLCKTGETRCAIKLLRMI 141

Query: 197 DGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
           + R  +P+   Y+ +++G  K++ V  A   + EM  +      NV  Y++ LI      
Sbjct: 142 EDRSTRPNVVMYSAIIDGLCKDKLVNEAYDLYSEM--DAREIFPNVITYNT-LICAFCLA 198

Query: 256 DGIYETVNSLKRMMERGCNPGMTFFKLAFEE-CLTGQNLRGAEFIWGAMVGRIGFRPDTH 314
             +    + L  M+ +  NP +  F +  +  C  G+N   A+ I+ AMV ++G  P+ +
Sbjct: 199 GQLMGAFSLLHEMILKNINPDVYTFSILIDALCKEGKN---AKQIFHAMV-QMGVNPNVY 254

Query: 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
            YN+MI+  C       AM LL EM++    PD  TYN L + L K  ++  A  L NEM
Sbjct: 255 SYNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSALNLMNEM 314

Query: 375 VKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHML 434
                  +H    A V  Y                              L+  LC    L
Sbjct: 315 -------HHRGQPADVVTYTS----------------------------LLDALCKNQNL 339

Query: 435 PEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLK 477
            +A      M E+GIQ T +  + L   L K  +    +EL +
Sbjct: 340 DKATALFMKMKERGIQPTMYTYTALIDGLCKGGRLKNAQELFQ 382



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 72/309 (23%), Positives = 131/309 (42%), Gaps = 8/309 (2%)

Query: 104 WNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVME 162
           ++ ++D L K+ L +  +D    M    +  ++ T+ ++  ++ +A ++  A +    M 
Sbjct: 153 YSAIIDGLCKDKLVNEAYDLYSEMDAREIFPNVITYNTLICAFCLAGQLMGAFSLLHEMI 212

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDVA 221
                 DV+  + L+ A+C++GK  +A Q F  +V   + P+  +Y I++ G  K + V 
Sbjct: 213 LKNINPDVYTFSILIDALCKEGK--NAKQIFHAMVQMGVNPNVYSYNIMINGLCKCKRVD 270

Query: 222 NAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFK 281
            A     EM +     PD V  Y+S +  L K    I   +N +  M  RG    +  + 
Sbjct: 271 EAMNLLREM-LHKNMVPDTV-TYNSLIDGLCKS-GRITSALNLMNEMHHRGQPADVVTYT 327

Query: 282 LAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVY 341
              +     QNL  A  ++  M  R G +P  + Y  +I   C       A +L   ++ 
Sbjct: 328 SLLDALCKNQNLDKATALFMKMKER-GIQPTMYTYTALIDGLCKGGRLKNAQELFQHLLV 386

Query: 342 NGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYV 401
            G   D+ TY ++   L K     EA  + ++M  N  + N       +R   + D+   
Sbjct: 387 KGCCIDVWTYTVMISGLCKEGMFDEALAIKSKMEDNGCIPNAVTFEIIIRSLFEKDENDK 446

Query: 402 AIKFWKYMI 410
           A K    MI
Sbjct: 447 AEKLLHEMI 455



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 56/234 (23%), Positives = 106/234 (45%), Gaps = 9/234 (3%)

Query: 82  GPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFAS 140
           G   K    +  Q+    + Y++N++++ L K    D   + ++ M  +N++    T+ S
Sbjct: 234 GKNAKQIFHAMVQMGVNPNVYSYNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNS 293

Query: 141 VFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGR 199
           +      + R+  A+   + M   G   DV    SLL A+C++     A   F+++ +  
Sbjct: 294 LIDGLCKSGRITSALNLMNEMHHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERG 353

Query: 200 IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIY 259
           I+P   TY  L++G  K   + NA++ F  ++++ G   D V  Y   +  L K  +G++
Sbjct: 354 IQPTMYTYTALIDGLCKGGRLKNAQELFQHLLVK-GCCID-VWTYTVMISGLCK--EGMF 409

Query: 260 ETVNSLKRMME-RGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMV--GRIGFR 310
           +   ++K  ME  GC P    F++             AE +   M+  G +GFR
Sbjct: 410 DEALAIKSKMEDNGCIPNAVTFEIIIRSLFEKDENDKAEKLLHEMIAKGLLGFR 463


>gi|147798083|emb|CAN67256.1| hypothetical protein VITISV_039434 [Vitis vinifera]
          Length = 722

 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 76/319 (23%), Positives = 142/319 (44%), Gaps = 8/319 (2%)

Query: 134 SLATFASVFSSYVVADRVKDAITTF-DVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQF 192
           ++  F ++ + YV   R+ +A     + M   GC  D+F  N+L+  +C+ G  + A + 
Sbjct: 352 NVVLFNTLINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYNTLILGLCKKGYLVSAREL 411

Query: 193 LRVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITL 251
           +  +  +  +P+  TY IL++ + KE  +  A+    EM  +      N   Y+  +  L
Sbjct: 412 MNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGK--GLALNAVGYNCLISAL 469

Query: 252 LKGCDGIYETVNSLKRMMERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFR 310
            K  + + + +N    M  +GC P + TF  L F  C   +    A  ++  M+   G  
Sbjct: 470 CKD-EKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNK-FEEALGLYQDMLLE-GVI 526

Query: 311 PDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGL 370
            +T  YN +I  +        A+KL+++M++ G   D  TYN L + L +   + +   L
Sbjct: 527 ANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLAL 586

Query: 371 FNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCD 430
           F +M+      N+ +C   +     + +   A++F + MI    +    T N L+ GLC 
Sbjct: 587 FEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCK 646

Query: 431 MHMLPEAVKYAKGMAEKGI 449
                EA+     +  +GI
Sbjct: 647 TGRAQEALNLFDKLQVEGI 665



 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 75/315 (23%), Positives = 124/315 (39%), Gaps = 8/315 (2%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           TF           R+ +A    D M   G   + F    L+  +CR GK  +A   L  V
Sbjct: 289 TFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGVLMHGLCRMGKVDEARMLLNKV 348

Query: 197 DGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD 256
                P+   +  L+ G+     +  AK    E ++ VG  PD +  Y++ ++ L K   
Sbjct: 349 P---NPNVVLFNTLINGYVSRGRLDEAKAVMHESMLSVGCGPD-IFTYNTLILGLCK--K 402

Query: 257 GIYETVNSLKRMME-RGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHM 315
           G   +   L   M+ +GC P +  + +  +       L  A  +   M G+ G   +   
Sbjct: 403 GYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGK-GLALNAVG 461

Query: 316 YNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
           YN +IS  C   +   A+ +  +M   G  PDI T+N L   L K  K  EA GL+ +M+
Sbjct: 462 YNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDML 521

Query: 376 KNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLP 435
               + N       +  ++       A+K    M+   C     T N L+  LC    + 
Sbjct: 522 LEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIE 581

Query: 436 EAVKYAKGMAEKGIQ 450
           + +   + M  KG+ 
Sbjct: 582 KGLALFEDMMSKGLN 596



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 91/430 (21%), Positives = 173/430 (40%), Gaps = 22/430 (5%)

Query: 58  LDKTLIRVSQETV---EQVLKFSYSH------PGPAVKFFRWSAYQLNDKHSPYAWNLVV 108
           +D  L+++ QE +   E +      H      PG A +         + + +  ++N+V+
Sbjct: 130 IDALLMQMKQEGIVFRESLFILIMKHYGRAGLPGQATRLLLDMRGVYSCEPTFRSYNVVL 189

Query: 109 D-LLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCK 167
           D LL  NC         + + K    ++ TF  V  +  + + V  A      M ++GC 
Sbjct: 190 DVLLAGNCPKVVPNVFYEMLSKGISPTVYTFGVVMKALCLVNEVDSACALLKDMTRHGCV 249

Query: 168 HDVFALNSLLSAICRDGKT--IDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKK 225
            +     +L+ A+ + G+   +       ++ G I PD +T+   + G  K   +  A K
Sbjct: 250 PNAIVYQTLIHALXKVGRVNEVLKLLEEMLLMGCI-PDVNTFNDAIHGLCKMLRIHEAAK 308

Query: 226 TFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFE 285
               M++  G+ P++     +Y + +   C      V+  + ++ +  NP +  F     
Sbjct: 309 LVDRMLLR-GFTPNSF----TYGVLMHGLCR--MGKVDEARMLLNKVPNPNVVLFNTLIN 361

Query: 286 ECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAF 345
             ++   L  A+ +    +  +G  PD   YN +I   C      +A +L++EM   G  
Sbjct: 362 GYVSRGRLDEAKAVMHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCE 421

Query: 346 PDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKF 405
           P++ TY IL +   K  +L EA  + +EM      LN       +      +    A+  
Sbjct: 422 PNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNM 481

Query: 406 WKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIK 465
           +  M    C     T N L+ GLC ++   EA+   + M  +G+       + L    + 
Sbjct: 482 FGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFL- 540

Query: 466 ARKEAVYEEL 475
            R+ A+ E L
Sbjct: 541 -RRGAMQEAL 549



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 66/262 (25%), Positives = 116/262 (44%), Gaps = 10/262 (3%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASVFSSYVVADRVKDAITTFDVM 161
            + +++D   K    +   + +  M  + + L+   +  + S+    ++V+DA+  F  M
Sbjct: 426 TYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDM 485

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR--VVDGRIKPDNDTYAILLEGWEKERD 219
              GCK D+F  NSL+  +C+  K  +A    +  +++G I  +  TY  L+  + +   
Sbjct: 486 SSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIA-NTITYNTLIHAFLRRGA 544

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTF 279
           +  A K   +M+   G   D++  Y+  LI  L     I + +   + MM +G NP    
Sbjct: 545 MQEALKLVNDMLFR-GCPLDDI-TYNG-LIKALCRAGNIEKGLALFEDMMSKGLNPNNIS 601

Query: 280 FKLAFEE-CLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDE 338
             +     C TG      EF+   M+ R G  PD   YN +I+  C +     A+ L D+
Sbjct: 602 CNILINGLCRTGNIQHALEFLRD-MIHR-GLTPDIVTYNSLINGLCKTGRAQEALNLFDK 659

Query: 339 MVYNGAFPDIQTYNILFEFLVK 360
           +   G  PD  TYN L  +  K
Sbjct: 660 LQVEGICPDAITYNTLISWHCK 681



 Score = 42.4 bits (98), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 1/86 (1%)

Query: 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL- 193
           + T+ S+ +      R ++A+  FD ++  G   D    N+L+S  C++G   DA   L 
Sbjct: 634 IVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLISWHCKEGMFDDAHLLLS 693

Query: 194 RVVDGRIKPDNDTYAILLEGWEKERD 219
           R VD    P+  T+ IL+  + KE D
Sbjct: 694 RGVDSGFIPNEVTWYILVSNFIKEGD 719


>gi|359497112|ref|XP_003635427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Vitis vinifera]
          Length = 740

 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 76/319 (23%), Positives = 142/319 (44%), Gaps = 8/319 (2%)

Query: 134 SLATFASVFSSYVVADRVKDAITTF-DVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQF 192
           ++  F ++ + YV   R+ +A     + M   GC  D+F  N+L+  +C+ G  + A + 
Sbjct: 370 NVVLFNTLINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYNTLILGLCKKGYLVSAREL 429

Query: 193 LRVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITL 251
           +  +  +  +P+  TY IL++ + KE  +  A+    EM  +      N   Y+  +  L
Sbjct: 430 MNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGK--GLALNAVGYNCLISAL 487

Query: 252 LKGCDGIYETVNSLKRMMERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFR 310
            K  + + + +N    M  +GC P + TF  L F  C   +    A  ++  M+   G  
Sbjct: 488 CKD-EKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNK-FEEALGLYQDMLLE-GVI 544

Query: 311 PDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGL 370
            +T  YN +I  +        A+KL+++M++ G   D  TYN L + L +   + +   L
Sbjct: 545 ANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLAL 604

Query: 371 FNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCD 430
           F +M+      N+ +C   +     + +   A++F + MI    +    T N L+ GLC 
Sbjct: 605 FEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCK 664

Query: 431 MHMLPEAVKYAKGMAEKGI 449
                EA+     +  +GI
Sbjct: 665 TGRAQEALNLFDKLQVEGI 683



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 75/315 (23%), Positives = 124/315 (39%), Gaps = 8/315 (2%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           TF           R+ +A    D M   G   + F    L+  +CR GK  +A   L  V
Sbjct: 307 TFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGVLMHGLCRMGKVDEARMLLNKV 366

Query: 197 DGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD 256
                P+   +  L+ G+     +  AK    E ++ VG  PD +  Y++ ++ L K   
Sbjct: 367 P---NPNVVLFNTLINGYVSRGRLDEAKAVMHESMLSVGCGPD-IFTYNTLILGLCK--K 420

Query: 257 GIYETVNSLKRMME-RGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHM 315
           G   +   L   M+ +GC P +  + +  +       L  A  +   M G+ G   +   
Sbjct: 421 GYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGK-GLALNAVG 479

Query: 316 YNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
           YN +IS  C   +   A+ +  +M   G  PDI T+N L   L K  K  EA GL+ +M+
Sbjct: 480 YNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDML 539

Query: 376 KNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLP 435
               + N       +  ++       A+K    M+   C     T N L+  LC    + 
Sbjct: 540 LEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIE 599

Query: 436 EAVKYAKGMAEKGIQ 450
           + +   + M  KG+ 
Sbjct: 600 KGLALFEDMMSKGLN 614



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 91/429 (21%), Positives = 172/429 (40%), Gaps = 22/429 (5%)

Query: 59  DKTLIRVSQETV---EQVLKFSYSH------PGPAVKFFRWSAYQLNDKHSPYAWNLVVD 109
           D  L+++ QE +   E +      H      PG A +         + + +  ++N+V+D
Sbjct: 149 DALLMQMKQEGIVFRESLFILIMKHYGRAGLPGQATRLLLDMRGVYSCEPTFRSYNVVLD 208

Query: 110 -LLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKH 168
            LL  NC         + + K    ++ TF  V  +  + + V  A      M ++GC  
Sbjct: 209 VLLAGNCPKVVPNVFYEMLSKGISPTVYTFGVVMKALCLVNEVDSACALLKDMTRHGCVP 268

Query: 169 DVFALNSLLSAICRDGKT--IDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKT 226
           +     +L+ A+ + G+   +       ++ G I PD +T+   + G  K   +  A K 
Sbjct: 269 NAIVYQTLIHALSKVGRVNEVLKLLEEMLLMGCI-PDVNTFNDAIHGLCKMLRIHEAAKL 327

Query: 227 FGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEE 286
              M++  G+ P++     +Y + +   C      V+  + ++ +  NP +  F      
Sbjct: 328 VDRMLLR-GFTPNSF----TYGVLMHGLCR--MGKVDEARMLLNKVPNPNVVLFNTLING 380

Query: 287 CLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFP 346
            ++   L  A+ +    +  +G  PD   YN +I   C      +A +L++EM   G  P
Sbjct: 381 YVSRGRLDEAKAVMHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEP 440

Query: 347 DIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFW 406
           ++ TY IL +   K  +L EA  + +EM      LN       +      +    A+  +
Sbjct: 441 NVITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMF 500

Query: 407 KYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKA 466
             M    C     T N L+ GLC ++   EA+   + M  +G+       + L    +  
Sbjct: 501 GDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFL-- 558

Query: 467 RKEAVYEEL 475
           R+ A+ E L
Sbjct: 559 RRGAMQEAL 567



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 66/262 (25%), Positives = 116/262 (44%), Gaps = 10/262 (3%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASVFSSYVVADRVKDAITTFDVM 161
            + +++D   K    +   + +  M  + + L+   +  + S+    ++V+DA+  F  M
Sbjct: 444 TYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDM 503

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR--VVDGRIKPDNDTYAILLEGWEKERD 219
              GCK D+F  NSL+  +C+  K  +A    +  +++G I  +  TY  L+  + +   
Sbjct: 504 SSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVI-ANTITYNTLIHAFLRRGA 562

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTF 279
           +  A K   +M+   G   D++  Y+  LI  L     I + +   + MM +G NP    
Sbjct: 563 MQEALKLVNDMLFR-GCPLDDI-TYNG-LIKALCRAGNIEKGLALFEDMMSKGLNPNNIS 619

Query: 280 FKLAFEE-CLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDE 338
             +     C TG      EF+   M+ R G  PD   YN +I+  C +     A+ L D+
Sbjct: 620 CNILINGLCRTGNIQHALEFLRD-MIHR-GLTPDIVTYNSLINGLCKTGRAQEALNLFDK 677

Query: 339 MVYNGAFPDIQTYNILFEFLVK 360
           +   G  PD  TYN L  +  K
Sbjct: 678 LQVEGICPDAITYNTLISWHCK 699



 Score = 42.4 bits (98), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 1/86 (1%)

Query: 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL- 193
           + T+ S+ +      R ++A+  FD ++  G   D    N+L+S  C++G   DA   L 
Sbjct: 652 IVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLISWHCKEGMFDDAHLLLS 711

Query: 194 RVVDGRIKPDNDTYAILLEGWEKERD 219
           R VD    P+  T+ IL+  + KE D
Sbjct: 712 RGVDSGFIPNEVTWYILVSNFIKEGD 737


>gi|357470109|ref|XP_003605339.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355506394|gb|AES87536.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 472

 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 83/313 (26%), Positives = 140/313 (44%), Gaps = 11/313 (3%)

Query: 151 VKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL--RVVDGRIKPDNDTYA 208
           V  A+  F  M    C  D +  ++L+  +C +G+  +A   L    V+G   P+   + 
Sbjct: 16  VDQAVEVFRGMSDRNCVADGYTYSTLMHGLCNEGRIDEAVSLLDEMQVEGTF-PNPVAFN 74

Query: 209 ILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITL-LKGCDGIYETVNSLKR 267
           +L+    K+ D++ A K    M ++ G  P+ V  Y+S +  L LKG   + + ++ L R
Sbjct: 75  VLISALCKKGDLSRASKLVDNMFLK-GCVPNEV-TYNSLVHGLCLKG--KLDKAMSLLNR 130

Query: 268 MMERGCNPG-MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYS 326
           M+   C P  +TF  L       G+ L G   +    +   G+R +   Y+ +IS     
Sbjct: 131 MVANKCVPNDITFGTLVDGFVKHGRALDGVRVL--VSLEEKGYRGNEFSYSSLISGLFKE 188

Query: 327 NETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENC 386
            +    M+L  EMV  G  P+   Y+ L + L +  K  EA     EM    +  N    
Sbjct: 189 GKGEHGMQLWKEMVEKGCKPNTIVYSALIDGLCREGKPDEAKEYLIEMKNKGHTPNSFTY 248

Query: 387 RAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAE 446
            + +  Y ++ D + AI  WK M +N C+      ++L+ GLC    L EA+   K M  
Sbjct: 249 SSLMWGYFEAGDIHKAILVWKEMTDNDCNHHEVCYSILINGLCKNGKLKEALIVWKQMLS 308

Query: 447 KGIQVTPFALSKL 459
           +GI++   A S +
Sbjct: 309 RGIKLDVVAYSSM 321



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 65/266 (24%), Positives = 118/266 (44%), Gaps = 7/266 (2%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-V 195
           TF ++   +V   R  D +     +E+ G + + F+ +SL+S + ++GK     Q  + +
Sbjct: 142 TFGTLVDGFVKHGRALDGVRVLVSLEEKGYRGNEFSYSSLISGLFKEGKGEHGMQLWKEM 201

Query: 196 VDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
           V+   KP+   Y+ L++G  +E     AK+   EM  + G  P++   Y S +    +  
Sbjct: 202 VEKGCKPNTIVYSALIDGLCREGKPDEAKEYLIEMKNK-GHTPNSF-TYSSLMWGYFEAG 259

Query: 256 DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHM 315
           D I++ +   K M +  CN     + +          L+ A  +W  M+ R G + D   
Sbjct: 260 D-IHKAILVWKEMTDNDCNHHEVCYSILINGLCKNGKLKEALIVWKQMLSR-GIKLDVVA 317

Query: 316 YNMMISLYCYSNETGAAMKLLDEMV-YNGAF-PDIQTYNILFEFLVKGRKLWEASGLFNE 373
           Y+ MI  +C +      MKL ++M+ +N    PD+ TYNIL         +  A  + N 
Sbjct: 318 YSSMIHGFCNAQLVEQGMKLFNQMLCHNPKLQPDVVTYNILLNAFCTKNSVSRAIDILNT 377

Query: 374 MVKNENVLNHENCRAAVRVYMDSDDP 399
           M+      +   C   ++   D+ DP
Sbjct: 378 MLDQGCDPDFITCDIFLKTLRDNMDP 403



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 59/157 (37%)

Query: 312 DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLF 371
           D + Y+ ++   C       A+ LLDEM   G FP+   +N+L   L K   L  AS L 
Sbjct: 34  DGYTYSTLMHGLCNEGRIDEAVSLLDEMQVEGTFPNPVAFNVLISALCKKGDLSRASKLV 93

Query: 372 NEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDM 431
           + M     V N     + V           A+     M+ N C     T   LV G    
Sbjct: 94  DNMFLKGCVPNEVTYNSLVHGLCLKGKLDKAMSLLNRMVANKCVPNDITFGTLVDGFVKH 153

Query: 432 HMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARK 468
               + V+    + EKG +   F+ S L   L K  K
Sbjct: 154 GRALDGVRVLVSLEEKGYRGNEFSYSSLISGLFKEGK 190


>gi|302143409|emb|CBI21970.3| unnamed protein product [Vitis vinifera]
          Length = 375

 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 87/325 (26%), Positives = 136/325 (41%), Gaps = 22/325 (6%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           T   + +S+   +R+  A +    + + G +       +L+  +C +GK  +A Q    +
Sbjct: 47  TLNILINSFCHLNRLGFAFSVLGDILKLGYQPSTATFTTLIRGLCVEGKIGEALQLFDKM 106

Query: 197 DGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
            G   +PD  TY  L+ G  K+R +  A   F +M+ + G  P+N   Y S LI  L   
Sbjct: 107 TGEGFQPDVLTYGTLINGLCKDRQLTEALSLFSDMLAK-GISPNNF-TYSS-LIHGLCIL 163

Query: 256 DGIYETVNSLKRMMERGCNPG-MTFFKLAFEECLTG--QNLRGAEFIWGAMVGRIGFRPD 312
               E +     M+ R   P  +TF  L    C  G  Q +  A  ++  M  + G  PD
Sbjct: 164 GHWKEAIRLFYAMIHRKIMPDQLTFNTLVDALCKEGMIQIMDKAMGLFEEM-SQQGLIPD 222

Query: 313 THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFN 372
           T  YN +I   C+      A+ L  EMV  G  PD+ TY ILF++L K  +L EA  L  
Sbjct: 223 TVTYNTLIHGLCHVGRLRDAIALFHEMVVYGQIPDLVTYRILFDYLCKNHRLAEAMVLL- 281

Query: 373 EMVKNENVLNHENCRAAVRVY---MD----SDDPYVAIKFWKYMIENHCSDLSETGNLLV 425
                  V+   N    + +Y   MD    + +   A   +  +          T  +++
Sbjct: 282 ------KVIEGTNLDPDIHIYSIVMDGMCRAGELEAARDLFSKLSSKGLHPDVRTYTIMI 335

Query: 426 AGLCDMHMLPEAVKYAKGMAEKGIQ 450
            GLC   +L EA K    M E  I+
Sbjct: 336 NGLCQQGLLAEASKLFGEMDENDIE 360



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 77/322 (23%), Positives = 138/322 (42%), Gaps = 48/322 (14%)

Query: 99  HSPYAWNLVVD----LLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDA 154
           H+ Y  N++++    L      F  + D +K   +    S ATF ++     V  ++ +A
Sbjct: 43  HNTYTLNILINSFCHLNRLGFAFSVLGDILKLGYQP---STATFTTLIRGLCVEGKIGEA 99

Query: 155 ITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEG 213
           +  FD M   G + DV    +L++ +C+D +  +A   F  ++   I P+N TY+ L+ G
Sbjct: 100 LQLFDKMTGEGFQPDVLTYGTLINGLCKDRQLTEALSLFSDMLAKGISPNNFTYSSLIHG 159

Query: 214 ------WEK---------ERDVANAKKTFGEMV--------IEV--------------GW 236
                 W++          R +   + TF  +V        I++              G 
Sbjct: 160 LCILGHWKEAIRLFYAMIHRKIMPDQLTFNTLVDALCKEGMIQIMDKAMGLFEEMSQQGL 219

Query: 237 DPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGA 296
            PD V  Y++ LI  L     + + +     M+  G  P +  +++ F+       L  A
Sbjct: 220 IPDTV-TYNT-LIHGLCHVGRLRDAIALFHEMVVYGQIPDLVTYRILFDYLCKNHRLAEA 277

Query: 297 EFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFE 356
             +   + G     PD H+Y++++   C + E  AA  L  ++   G  PD++TY I+  
Sbjct: 278 MVLLKVIEGT-NLDPDIHIYSIVMDGMCRAGELEAARDLFSKLSSKGLHPDVRTYTIMIN 336

Query: 357 FLVKGRKLWEASGLFNEMVKNE 378
            L +   L EAS LF EM +N+
Sbjct: 337 GLCQQGLLAEASKLFGEMDEND 358



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/194 (25%), Positives = 84/194 (43%), Gaps = 3/194 (1%)

Query: 259 YETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNM 318
           Y TV SL + M+    P  T+            N  G  F     + ++G++P T  +  
Sbjct: 26  YSTVLSLYKQMDSFGIPHNTYTLNILINSFCHLNRLGFAFSVLGDILKLGYQPSTATFTT 85

Query: 319 MISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNE 378
           +I   C   + G A++L D+M   G  PD+ TY  L   L K R+L EA  LF++M+   
Sbjct: 86  LIRGLCVEGKIGEALQLFDKMTGEGFQPDVLTYGTLINGLCKDRQLTEALSLFSDMLAKG 145

Query: 379 NVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCD---MHMLP 435
              N+    + +           AI+ +  MI         T N LV  LC    + ++ 
Sbjct: 146 ISPNNFTYSSLIHGLCILGHWKEAIRLFYAMIHRKIMPDQLTFNTLVDALCKEGMIQIMD 205

Query: 436 EAVKYAKGMAEKGI 449
           +A+   + M+++G+
Sbjct: 206 KAMGLFEEMSQQGL 219


>gi|255547043|ref|XP_002514579.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223546183|gb|EEF47685.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 840

 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 100/396 (25%), Positives = 163/396 (41%), Gaps = 32/396 (8%)

Query: 105 NLVVDLLGKNCLF------DAMWDAIKSMKKENVLSLATFASVFSSYVVAD------RVK 152
           N +V +   N L       + MWD    +K        T  S ++S +V D      R +
Sbjct: 209 NFIVSIQTYNSLLYNLRHSNIMWDVYNEIKVS-----GTPQSEYTSSIVVDGLCRQSRFQ 263

Query: 153 DAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILL 211
           DA+  F   E    +  V + N+++S  C+ G    A  F   ++   + PD  +Y IL+
Sbjct: 264 DAVLFFQDTEGKEFQPSVVSFNTIMSRYCKLGFVDVAKSFFCMMLKHGLLPDAYSYNILI 323

Query: 212 EGWEKERDVANAKKTFGEMVIEVGWDPD----NVPAYDSYLITLLKGCDGIYETVNSLKR 267
            G      +  A     +M    G +PD    N+ A    L+ L+ G        N +++
Sbjct: 324 HGLCIAGSMGEALDLKNDME-NHGLEPDMVTYNILAKGFRLLGLING------AWNIIQK 376

Query: 268 MMERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYS 326
           M+ +G NP + T+  L    C  G N+  A  ++  M+   GF+       +++   C S
Sbjct: 377 MLIKGPNPNLVTYTVLICGHCQIG-NVEEALKLYKEMISH-GFQLSIISSTVLLGSLCKS 434

Query: 327 NETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENC 386
            +   A KL  EM  NG  PD+ TY+ L   L K  ++ +A  L+ +M  N  + N    
Sbjct: 435 RQVDVAFKLFCEMEANGLRPDLITYSTLIHGLCKQGEVQQAILLYEKMCSNRIIPNSLIH 494

Query: 387 RAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAE 446
            A +    +      A  ++ Y+I ++ S      N+++ G        EAVK  K + E
Sbjct: 495 GAILMGLCEKGKISQARMYFDYLITSNLSLDIILYNIMIDGYIKRGNTREAVKLYKQLGE 554

Query: 447 KGIQVTPFALSKLKQILIKARKEAVYEELLKKCKAH 482
           KGI  T    + L       RK +    LL   K H
Sbjct: 555 KGISPTIVTFNSLMYGFCINRKLSQARRLLDTIKLH 590



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 85/387 (21%), Positives = 159/387 (41%), Gaps = 10/387 (2%)

Query: 99  HSPYAWNLVVDLLGKNCLF-DAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITT 157
            S Y  ++VVD L +   F DA+     +  KE   S+ +F ++ S Y     V  A + 
Sbjct: 244 QSEYTSSIVVDGLCRQSRFQDAVLFFQDTEGKEFQPSVVSFNTIMSRYCKLGFVDVAKSF 303

Query: 158 FDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEK 216
           F +M ++G   D ++ N L+  +C  G   +A      ++   ++PD  TY IL +G+  
Sbjct: 304 FCMMLKHGLLPDAYSYNILIHGLCIAGSMGEALDLKNDMENHGLEPDMVTYNILAKGFRL 363

Query: 217 ERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD--GIYETVNSLKRMMERGCN 274
              +  A     +M+I+ G +P+ V    +Y + +   C    + E +   K M+  G  
Sbjct: 364 LGLINGAWNIIQKMLIK-GPNPNLV----TYTVLICGHCQIGNVEEALKLYKEMISHGFQ 418

Query: 275 PGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMK 334
             +    +        + +  A  ++  M    G RPD   Y+ +I   C   E   A+ 
Sbjct: 419 LSIISSTVLLGSLCKSRQVDVAFKLFCEMEAN-GLRPDLITYSTLIHGLCKQGEVQQAIL 477

Query: 335 LLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYM 394
           L ++M  N   P+   +  +   L +  K+ +A   F+ ++ +   L+       +  Y+
Sbjct: 478 LYEKMCSNRIIPNSLIHGAILMGLCEKGKISQARMYFDYLITSNLSLDIILYNIMIDGYI 537

Query: 395 DSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPF 454
              +   A+K +K + E   S    T N L+ G C    L +A +    +   G++    
Sbjct: 538 KRGNTREAVKLYKQLGEKGISPTIVTFNSLMYGFCINRKLSQARRLLDTIKLHGLEPNAV 597

Query: 455 ALSKLKQILIKARKEAVYEELLKKCKA 481
             + L  +  +        ELL + KA
Sbjct: 598 TYTTLMNVYCEEGNMQSLLELLSEMKA 624



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 78/379 (20%), Positives = 162/379 (42%), Gaps = 28/379 (7%)

Query: 103 AWNLVVDLLGK---------------NCLFDAMWDAIKSMKKENV-----LSLATFASVF 142
           AWN++  +L K               +C    + +A+K + KE +     LS+ +   + 
Sbjct: 370 AWNIIQKMLIKGPNPNLVTYTVLICGHCQIGNVEEALK-LYKEMISHGFQLSIISSTVLL 428

Query: 143 SSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDA-WQFLRVVDGRIK 201
            S   + +V  A   F  ME  G + D+   ++L+  +C+ G+   A   + ++   RI 
Sbjct: 429 GSLCKSRQVDVAFKLFCEMEANGLRPDLITYSTLIHGLCKQGEVQQAILLYEKMCSNRII 488

Query: 202 PDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYET 261
           P++  +  +L G  ++  ++ A+  F + +I      D +  Y+  +   +K      E 
Sbjct: 489 PNSLIHGAILMGLCEKGKISQARMYF-DYLITSNLSLD-IILYNIMIDGYIKR-GNTREA 545

Query: 262 VNSLKRMMERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMI 320
           V   K++ E+G +P + TF  L +  C+  + L  A  +    +   G  P+   Y  ++
Sbjct: 546 VKLYKQLGEKGISPTIVTFNSLMYGFCIN-RKLSQARRLLDT-IKLHGLEPNAVTYTTLM 603

Query: 321 SLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENV 380
           ++YC      + ++LL EM      P   TY ++ + L K  KL E+  L  +M      
Sbjct: 604 NVYCEEGNMQSLLELLSEMKAKAIGPTHITYTVVIKGLCKQWKLQESCQLLEDMDAVGLT 663

Query: 381 LNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKY 440
            +  +    ++ +  + D   A + +  M+ ++    S T N+L+ G C    L +A   
Sbjct: 664 PDQVSYNTIIQAFCKARDMRKAFQLYDKMLLHNLEPTSVTYNILINGFCVYGDLKDADNL 723

Query: 441 AKGMAEKGIQVTPFALSKL 459
              +  + + +  +A + +
Sbjct: 724 LVSLQNRKVNLNKYAYTTI 742



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 75/361 (20%), Positives = 141/361 (39%), Gaps = 46/361 (12%)

Query: 110 LLGKNCLFDAMWDAIKSM--KKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCK 167
           LLG   L +  W+ I+ M  K  N  +L T+  +   +     V++A+  +  M  +G +
Sbjct: 363 LLG---LINGAWNIIQKMLIKGPNP-NLVTYTVLICGHCQIGNVEEALKLYKEMISHGFQ 418

Query: 168 HDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKT 226
             + +   LL ++C+  +   A++ F  +    ++PD  TY+ L+ G  K+ +V  A   
Sbjct: 419 LSIISSTVLLGSLCKSRQVDVAFKLFCEMEANGLRPDLITYSTLIHGLCKQGEVQQAILL 478

Query: 227 FGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEE 286
           + +M          +P       +L+ G          L  + E+G    ++  ++ F+ 
Sbjct: 479 YEKMC-----SNRIIPN------SLIHGA--------ILMGLCEKG---KISQARMYFDY 516

Query: 287 CLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFP 346
            +T                      D  +YN+MI  Y     T  A+KL  ++   G  P
Sbjct: 517 LITSN-----------------LSLDIILYNIMIDGYIKRGNTREAVKLYKQLGEKGISP 559

Query: 347 DIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFW 406
            I T+N L       RKL +A  L + +  +    N       + VY +  +    ++  
Sbjct: 560 TIVTFNSLMYGFCINRKLSQARRLLDTIKLHGLEPNAVTYTTLMNVYCEEGNMQSLLELL 619

Query: 407 KYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKA 466
             M          T  +++ GLC    L E+ +  + M   G+     + + + Q   KA
Sbjct: 620 SEMKAKAIGPTHITYTVVIKGLCKQWKLQESCQLLEDMDAVGLTPDQVSYNTIIQAFCKA 679

Query: 467 R 467
           R
Sbjct: 680 R 680



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 60/304 (19%), Positives = 122/304 (40%), Gaps = 11/304 (3%)

Query: 150 RVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYA 208
           ++  A   FD +       D+   N ++    + G T +A +  + +  + I P   T+ 
Sbjct: 506 KISQARMYFDYLITSNLSLDIILYNIMIDGYIKRGNTREAVKLYKQLGEKGISPTIVTFN 565

Query: 209 ILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD--GIYETVNSLK 266
            L+ G+   R ++ A++    + +  G +P+ V    +Y   +   C+   +   +  L 
Sbjct: 566 SLMYGFCINRKLSQARRLLDTIKLH-GLEPNAV----TYTTLMNVYCEEGNMQSLLELLS 620

Query: 267 RMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYS 326
            M  +   P    + +  +       L+ +  +   M   +G  PD   YN +I  +C +
Sbjct: 621 EMKAKAIGPTHITYTVVIKGLCKQWKLQESCQLLEDM-DAVGLTPDQVSYNTIIQAFCKA 679

Query: 327 NETGAAMKLLDEMVYNGAFPDIQTYNILFE-FLVKGRKLWEASGLFNEMVKNENVLNHEN 385
            +   A +L D+M+ +   P   TYNIL   F V G  L +A  L   +   +  LN   
Sbjct: 680 RDMRKAFQLYDKMLLHNLEPTSVTYNILINGFCVYG-DLKDADNLLVSLQNRKVNLNKYA 738

Query: 386 CRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMA 445
               ++ +    D   A+ +++ M+E          + ++  LC   ++ EA  +   M 
Sbjct: 739 YTTIIKAHCAKGDVDKAVVYFRQMVEKGFEVSIRDYSAVIGRLCKRCLVTEAKYFFCMML 798

Query: 446 EKGI 449
             G+
Sbjct: 799 SDGV 802


>gi|356529507|ref|XP_003533332.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 546

 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 104/491 (21%), Positives = 194/491 (39%), Gaps = 56/491 (11%)

Query: 22  KRSTFASHLDVPNLPPTIKTLCEIIANTPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHP 81
           +R  F+  L +PN    ++       ++  P++++V D     VSQ      ++    H 
Sbjct: 5   RRLRFSVSLSIPNFSSFLQNSSHSHFHSQPPSIQNVDDA----VSQFNRMLCMR----HT 56

Query: 82  GPAVKFFRWSAYQLNDKHSPYAWNLV---------VDLLGKNCLFDAMWDA--------- 123
            P ++F +        KH   A +L           DL+  N L +              
Sbjct: 57  PPIIQFNKILDSFAKIKHYSTAVSLSHRLELKGIQPDLITLNILINCFCHMGQITFGFSV 116

Query: 124 -IKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICR 182
             K +K+       TF ++     +  +V  A+   D +   G K D  +  +L++ +C+
Sbjct: 117 LAKILKRGYQPHTITFTTLIKGLCLKGQVNKALHFHDKLLAQGIKFDQVSYGTLINGVCK 176

Query: 183 DGKTIDAWQFLRVVDGRI-KPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNV 241
            G T  A + +R +DGR+ KP+ + Y  +++   K + V+ A   F EM  + G   D V
Sbjct: 177 IGDTRGAIKLVRKIDGRLTKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTAK-GISADVV 235

Query: 242 PAYDSYLITLLKGC--DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFI 299
               +Y   +   C    + E +  L  M+ +  NP +  + +  +       ++ A+ +
Sbjct: 236 ----TYTTLIYGFCIASKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKNV 291

Query: 300 WGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLV 359
              M+ +   +PD   Y+ ++  Y    E   A  + + M   G  PD+ +Y IL     
Sbjct: 292 LAVML-KACVKPDVITYSTLMDGYFLVYELKKAQHVFNAMSLMGVTPDVHSYTILINGFC 350

Query: 360 KGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSE 419
           K + + EA  LF EM       + +N    +  Y    D         Y + +   ++ +
Sbjct: 351 KNKMVDEALNLFKEM-------HQKNMVPGIVTYSSLIDGLCKSGRISY-VWDLIDEMRD 402

Query: 420 TG--------NLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARK--- 468
            G        N L+ GLC    L  A+     M ++GI+   F  + L   L K  +   
Sbjct: 403 RGIPANVITYNSLIDGLCKNGHLDRAIALFNKMKDQGIRPCSFTFTILLDGLCKGGRLKD 462

Query: 469 -EAVYEELLKK 478
            +  +++LL K
Sbjct: 463 AQEAFQDLLTK 473



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 88/383 (22%), Positives = 159/383 (41%), Gaps = 53/383 (13%)

Query: 104 WNLVVDLLGKNCLFDAMWDAIKSMKKENVLS-LATFASVFSSYVVADRVKDAITTFDVME 162
           +N ++D L K  L    +     M  + + + + T+ ++   + +A ++K+AI   + M 
Sbjct: 202 YNTIIDALCKYQLVSEAYGLFSEMTAKGISADVVTYTTLIYGFCIASKLKEAIGLLNEMV 261

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQFLRV-VDGRIKPDNDTYAILLEGWEKERDVA 221
                 +V+  N L+ A+C++GK  +A   L V +   +KPD  TY+ L++G+    ++ 
Sbjct: 262 LKTINPNVYTYNILVDALCKEGKVKEAKNVLAVMLKACVKPDVITYSTLMDGYFLVYELK 321

Query: 222 NAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDG--IYETVNSLKRMMERGCNPGM-T 278
            A+  F  M + +G  PD      SY I +   C    + E +N  K M ++   PG+ T
Sbjct: 322 KAQHVFNAMSL-MGVTPD----VHSYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVT 376

Query: 279 FFKLAFEECLTGQNLRGAEFIW---GAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKL 335
           +  L    C +G+      ++W     M  R G   +   YN +I   C +     A+ L
Sbjct: 377 YSSLIDGLCKSGR----ISYVWDLIDEMRDR-GIPANVITYNSLIDGLCKNGHLDRAIAL 431

Query: 336 LDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMD 395
            ++M   G  P   T+ IL + L KG +L +A   F +++     L+             
Sbjct: 432 FNKMKDQGIRPCSFTFTILLDGLCKGGRLKDAQEAFQDLLTKGYHLD------------- 478

Query: 396 SDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFA 455
                     +KY             N+++ G C   +L EA+     M E G       
Sbjct: 479 ---------VYKY-------------NVMINGHCKQGLLEEALTMLSKMEENGCVPNAVT 516

Query: 456 LSKLKQILIKARKEAVYEELLKK 478
              +   L K  +    E+LL++
Sbjct: 517 FDIIINALFKKDENDKAEKLLRQ 539


>gi|356530056|ref|XP_003533600.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 694

 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 84/350 (24%), Positives = 147/350 (42%), Gaps = 42/350 (12%)

Query: 136 ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRV 195
            ++ ++ +        + AI    ++E    + DV   N+++  +C+D    +A+ F   
Sbjct: 238 VSYGTLLNGLCKIGETRCAIKLLRMIEDRSTRPDVVMYNTIIDGLCKDKLVNEAYDFYTE 297

Query: 196 VDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG 254
           ++ R I PD  TY+ L+ G+     +  A     EM ++   +PD V  Y + LI  L  
Sbjct: 298 MNSRGIFPDVITYSTLICGFCLAGQLMGAFSLLNEMTLK-NINPD-VYTY-TILIDALCK 354

Query: 255 CDGIYETVNSLKRMMERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDT 313
              + E  N L  M + G  P + T+  L    CL G+ +  A+ I+ AMV +    P  
Sbjct: 355 EGKLKEAKNLLGVMTKEGVKPNVVTYSTLMDGYCLVGE-VHNAKQIFHAMV-QTEVNPSV 412

Query: 314 HMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNE 373
             YN+MI+  C       AM LL EM++    P+  TYN L + L K  ++  A  L  E
Sbjct: 413 CSYNIMINGLCKGKSVDEAMNLLREMLHKNVVPNTVTYNSLIDGLCKSGRITSALDLMKE 472

Query: 374 MVKN-------------ENVLNHENCRAAVRVYMDSDD--------PYVAI--------- 403
           +                + +  ++N   A+ ++M   +         Y A+         
Sbjct: 473 LHHRGQPADVITYTSLLDGLCKNQNLDKAIALFMKMKERGIQPNKYTYTALIDGLCKGAR 532

Query: 404 -----KFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448
                K +++++   C     T N+++ GLC   ML EA+     M + G
Sbjct: 533 LKNAQKLFQHILVKGCCIDVYTYNVMIGGLCKEGMLDEALAMKSKMEDNG 582



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 81/344 (23%), Positives = 147/344 (42%), Gaps = 41/344 (11%)

Query: 104 WNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVME 162
           +N ++D L K+ L +  +D    M    +   + T++++   + +A ++  A +  + M 
Sbjct: 275 YNTIIDGLCKDKLVNEAYDFYTEMNSRGIFPDVITYSTLICGFCLAGQLMGAFSLLNEMT 334

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVA 221
                 DV+    L+ A+C++GK  +A   L V+    +KP+  TY+ L++G+    +V 
Sbjct: 335 LKNINPDVYTYTILIDALCKEGKLKEAKNLLGVMTKEGVKPNVVTYSTLMDGYCLVGEVH 394

Query: 222 NAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPG-MTFF 280
           NAK+ F  MV +   +P +V +Y+  +  L KG   + E +N L+ M+ +   P  +T+ 
Sbjct: 395 NAKQIFHAMV-QTEVNP-SVCSYNIMINGLCKG-KSVDEAMNLLREMLHKNVVPNTVTYN 451

Query: 281 KLAFEECLTG----------------------------------QNLRGAEFIWGAMVGR 306
            L    C +G                                  QNL  A  ++  M  R
Sbjct: 452 SLIDGLCKSGRITSALDLMKELHHRGQPADVITYTSLLDGLCKNQNLDKAIALFMKMKER 511

Query: 307 IGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWE 366
            G +P+ + Y  +I   C       A KL   ++  G   D+ TYN++   L K   L E
Sbjct: 512 -GIQPNKYTYTALIDGLCKGARLKNAQKLFQHILVKGCCIDVYTYNVMIGGLCKEGMLDE 570

Query: 367 ASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMI 410
           A  + ++M  N  + +       +R   + D+   A K    MI
Sbjct: 571 ALAMKSKMEDNGCIPDAVTFEIIIRSLFEKDENDKAEKLLHEMI 614



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 89/378 (23%), Positives = 157/378 (41%), Gaps = 29/378 (7%)

Query: 116 LFDAMWDAIKS----MKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVF 171
           + D + DA+      +   N  S+  F  +  S V       AI+    ME  G + D+ 
Sbjct: 109 IHDVVHDAVSQFNGMLLMRNTPSIIEFGKILGSLVKMKHFPTAISLSKQMEVKGIEPDLV 168

Query: 172 ALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEM 230
            L+ L++  C  G+   ++  L +++    +P+      L++G   + +V  +   F + 
Sbjct: 169 TLSILINCFCHLGQMAFSFSVLGKILKLGYQPNTIILTTLMKGLCLKGEVKKSLH-FHDK 227

Query: 231 VIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLK--RMME-RGCNPGMTFFKLAFEEC 287
           V+  G+  + V +Y     TLL G   I ET  ++K  RM+E R   P +  +    +  
Sbjct: 228 VVAQGFQMNQV-SYG----TLLNGLCKIGETRCAIKLLRMIEDRSTRPDVVMYNTIIDGL 282

Query: 288 LTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPD 347
              + +  A   +  M  R G  PD   Y+ +I  +C + +   A  LL+EM      PD
Sbjct: 283 CKDKLVNEAYDFYTEMNSR-GIFPDVITYSTLICGFCLAGQLMGAFSLLNEMTLKNINPD 341

Query: 348 IQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAI---- 403
           + TY IL + L K  KL EA  L   M K       E  +  V  Y    D Y  +    
Sbjct: 342 VYTYTILIDALCKEGKLKEAKNLLGVMTK-------EGVKPNVVTYSTLMDGYCLVGEVH 394

Query: 404 ---KFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLK 460
              + +  M++   +    + N+++ GLC    + EA+   + M  K +       + L 
Sbjct: 395 NAKQIFHAMVQTEVNPSVCSYNIMINGLCKGKSVDEAMNLLREMLHKNVVPNTVTYNSLI 454

Query: 461 QILIKARKEAVYEELLKK 478
             L K+ +     +L+K+
Sbjct: 455 DGLCKSGRITSALDLMKE 472



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 86/367 (23%), Positives = 154/367 (41%), Gaps = 12/367 (3%)

Query: 117 FDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSL 176
           F  +   +K   + N + L T   +     +   VK ++   D +   G + +  +  +L
Sbjct: 187 FSVLGKILKLGYQPNTIILTT---LMKGLCLKGEVKKSLHFHDKVVAQGFQMNQVSYGTL 243

Query: 177 LSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVG 235
           L+ +C+ G+T  A + LR+++ R  +PD   Y  +++G  K++ V  A   + EM    G
Sbjct: 244 LNGLCKIGETRCAIKLLRMIEDRSTRPDVVMYNTIIDGLCKDKLVNEAYDFYTEMNSR-G 302

Query: 236 WDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRG 295
             PD V  Y S LI        +    + L  M  +  NP +  + +  +       L+ 
Sbjct: 303 IFPD-VITY-STLICGFCLAGQLMGAFSLLNEMTLKNINPDVYTYTILIDALCKEGKLKE 360

Query: 296 AEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILF 355
           A+ + G M  + G +P+   Y+ ++  YC   E   A ++   MV     P + +YNI+ 
Sbjct: 361 AKNLLGVMT-KEGVKPNVVTYSTLMDGYCLVGEVHNAKQIFHAMVQTEVNPSVCSYNIMI 419

Query: 356 EFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCS 415
             L KG+ + EA  L  EM+    V N     + +     S     A+   K +      
Sbjct: 420 NGLCKGKSVDEAMNLLREMLHKNVVPNTVTYNSLIDGLCKSGRITSALDLMKELHHRGQP 479

Query: 416 DLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARK----EAV 471
               T   L+ GLC    L +A+     M E+GIQ   +  + L   L K  +    + +
Sbjct: 480 ADVITYTSLLDGLCKNQNLDKAIALFMKMKERGIQPNKYTYTALIDGLCKGARLKNAQKL 539

Query: 472 YEELLKK 478
           ++ +L K
Sbjct: 540 FQHILVK 546



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 61/279 (21%), Positives = 110/279 (39%), Gaps = 41/279 (14%)

Query: 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDV 160
           Y + +++D L K        + +  M KE V  ++ T++++   Y +   V +A   F  
Sbjct: 343 YTYTILIDALCKEGKLKEAKNLLGVMTKEGVKPNVVTYSTLMDGYCLVGEVHNAKQIFHA 402

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTID-AWQFLR-VVDGRIKPDNDTYAILLEGWEKER 218
           M Q      V + N +++ +C+ GK++D A   LR ++   + P+  TY  L++G  K  
Sbjct: 403 MVQTEVNPSVCSYNIMINGLCK-GKSVDEAMNLLREMLHKNVVPNTVTYNSLIDGLCKSG 461

Query: 219 DVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMT 278
            + +A     E+       P +V  Y S L  L K    + + +    +M ERG  P   
Sbjct: 462 RITSALDLMKEL--HHRGQPADVITYTSLLDGLCKN-QNLDKAIALFMKMKERGIQPNKY 518

Query: 279 FFKLAFEECLTGQNLRGAE---------------FIWGAMVGRI---------------- 307
            +    +    G  L+ A+               + +  M+G +                
Sbjct: 519 TYTALIDGLCKGARLKNAQKLFQHILVKGCCIDVYTYNVMIGGLCKEGMLDEALAMKSKM 578

Query: 308 ---GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNG 343
              G  PD   + ++I      +E   A KLL EM+  G
Sbjct: 579 EDNGCIPDAVTFEIIIRSLFEKDENDKAEKLLHEMIAKG 617


>gi|294462101|gb|ADE76603.1| unknown [Picea sitchensis]
          Length = 290

 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/256 (25%), Positives = 121/256 (47%), Gaps = 10/256 (3%)

Query: 128 KKENVLSLATFASVFSSYVVADRVKDAITTFDVM-EQYGCKHDVFALNSLLSAICRDGKT 186
           ++ ++ S   F ++   +  A  +  A+  F  + E++  +  V + N+++   C+ G+ 
Sbjct: 13  RRGSIFSEPVFCNLIGGFFKAGEIYKALDVFHFIPEKF--ERTVMSYNAVMDGFCKAGQL 70

Query: 187 IDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYD 245
            +A Q+L ++ +  + P+  +Y IL+ G+  +  +  A+K F  M  E G  PD    Y+
Sbjct: 71  QEALQYLDKLPENNLGPNATSYTILISGYITQGKLQEAEKLFRSMA-EKGCIPDAC-VYN 128

Query: 246 SYLITLLKGCDGIY-ETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMV 304
           + L    K  +G++ E    L+ M+     P    + +   E      + GA  I+  M+
Sbjct: 129 TLLDAYFK--EGMFAEAEKLLEEMVTEHREPDSVTYTMLINEFTKQGKMEGALKIFANMI 186

Query: 305 GRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKL 364
              G +PD  +YN    L C  ++   A KL   MV  G  PD+ TY+IL E   +  + 
Sbjct: 187 -EAGLKPDVTVYNKWFGLLCKESKFDEAQKLFQRMVDGGQNPDVGTYDILTEGFGQEGRA 245

Query: 365 WEASGLFNEMVKNENV 380
            EA  LF ++++  N+
Sbjct: 246 EEAKKLFRDILEKGNL 261


>gi|449485308|ref|XP_004157129.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g31850, chloroplastic-like [Cucumis sativus]
          Length = 1113

 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 82/340 (24%), Positives = 149/340 (43%), Gaps = 8/340 (2%)

Query: 40  KTLCEIIANTPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKH 99
           K  C +    P   V  V  KT IRVS++ V  VLK S + P  A+ +F   +      H
Sbjct: 63  KDFCRLALQNPE-QVMVVKGKTEIRVSEDEVLGVLK-SMTDPIRALSYFYSISEFPTVLH 120

Query: 100 SPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTF 158
           +    N +++ L  +   + M    + M+K+ +   L T+ ++F +  +   ++   T  
Sbjct: 121 TTETCNFMLEFLRVHDKVEDMAAVFEFMQKKIIRRDLDTYLTIFKALSIRGGLRQMTTVL 180

Query: 159 DVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKE 217
           + M + G   + ++ N L+  + + G   +A + + R+V   +KP   TY+ L+    K+
Sbjct: 181 NKMRKAGFVLNAYSYNGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALGKK 240

Query: 218 RDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGM 277
           RD         EM  ++G  P NV  + +  I +L     I E     +RM + GC P +
Sbjct: 241 RDSEMVMVLLKEME-DLGLRP-NVYTF-TICIRVLGRAGKIDEAYEIFRRMDDEGCGPDL 297

Query: 278 TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLD 337
             + +  +       L  A+ ++  M    G +PD  +Y  ++  +    +     +   
Sbjct: 298 VTYTVLIDALCNAGQLENAKELFVKMKAN-GHKPDQVIYITLLDKFNDFGDLDTFKEFWS 356

Query: 338 EMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKN 377
           +M  +G  PD+ T+ IL + L K R   EA   F+ M K 
Sbjct: 357 QMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQ 396



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 61/244 (25%), Positives = 103/244 (42%), Gaps = 9/244 (3%)

Query: 134  SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
            +LA++  +    +     + A   F  M+  GC  D F  N LL+   + GK  + ++  
Sbjct: 787  TLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFELY 846

Query: 194  R-VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSY--LIT 250
            + ++  R KPD  TY I++    K  ++  A   F ++V       D  P   +Y  LI 
Sbjct: 847  KEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLV-----SSDFRPTPRTYGPLID 901

Query: 251  LLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFR 310
             L     + E +   + M + GC P    F +         +   A  ++  MV   G R
Sbjct: 902  GLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNE-GIR 960

Query: 311  PDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGL 370
            PD   Y +++   C +     A+   +E+   G  PD   YN +   L K +++ EA  L
Sbjct: 961  PDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEALAL 1020

Query: 371  FNEM 374
            +NEM
Sbjct: 1021 YNEM 1024



 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 74/282 (26%), Positives = 117/282 (41%), Gaps = 16/282 (5%)

Query: 78   YSHPGPAVKFFRWSAYQLNDKHSPYA--WNLVVDLLGKNCLFDAMWDAIKSMKKENVL-S 134
            +   G   + F      ++ +  P A  +N+V+  L K+   D   D    +   +   +
Sbjct: 833  HGKSGKITELFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPT 892

Query: 135  LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FL 193
              T+  +        R+++A+  F+ M  YGCK +    N L++   + G T  A Q F 
Sbjct: 893  PRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFK 952

Query: 194  RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLK 253
            R+V+  I+PD  +Y IL++       V  A   F E+    G DPD + AY+  +I  L 
Sbjct: 953  RMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELK-STGLDPDFI-AYNR-IINGLG 1009

Query: 254  GCDGIYETVNSLKRMMERGCNPGM-TFFKLAFEECLTG---QNLRGAEFIWGAMVGRIGF 309
                + E +     M  RG  P + T+  L     L G   Q  R  E +  A     G 
Sbjct: 1010 KSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLA-----GL 1064

Query: 310  RPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTY 351
             PD   YN +I  Y  S     A  +   M+ +G  P+I TY
Sbjct: 1065 EPDVFTYNALIRGYSLSENPEHAYTVYKNMMVDGCNPNIGTY 1106



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/241 (25%), Positives = 101/241 (41%), Gaps = 40/241 (16%)

Query: 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR 194
           + TF  +      A    +A  TFDVM + G   ++   N+L+  + R G+  DA + L 
Sbjct: 367 VVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLLD 426

Query: 195 VVDG-RIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLK 253
            ++   ++P   TY   ++ + K  +   A +TF +M  + G  P+ V            
Sbjct: 427 TMESVGVQPTAYTYITFIDYFGKSGETGKAVETFEKMKAK-GIVPNIV------------ 473

Query: 254 GCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDT 313
            C+       SL  + E G                    LR A+ ++  +    G  PD+
Sbjct: 474 ACNA------SLYSLAEMG-------------------RLREAKTMFNGLREN-GLAPDS 507

Query: 314 HMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNE 373
             YNMM+  Y    +   A+ LL EM+ NG  PD+   N L + L K  ++ EA  +F+ 
Sbjct: 508 VTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDR 567

Query: 374 M 374
           M
Sbjct: 568 M 568



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 82/339 (24%), Positives = 139/339 (41%), Gaps = 24/339 (7%)

Query: 92   AYQLNDKHSPYAWNLVVDLLGKNCLFDAM---------WDAIKSMKKENVLSLA-TFASV 141
            AYQ+ DK +     +   L   NCL   +         WD  K MK       A TF  +
Sbjct: 771  AYQIFDKFTK-KLGISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNML 829

Query: 142  FSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGRI 200
             + +  + ++ +    +  M    CK D    N ++S++ +      A  F   +V    
Sbjct: 830  LAVHGKSGKITELFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDF 889

Query: 201  KPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYE 260
            +P   TY  L++G  K   +  A + F EM  + G  P N   ++     L+ G   I +
Sbjct: 890  RPTPRTYGPLIDGLAKVGRLEEAMRLFEEMS-DYGCKP-NCAIFN----ILINGYGKIGD 943

Query: 261  TVNS---LKRMMERGCNPGMTFFKLAFE-ECLTGQNLRGAEFIWGAMVGRIGFRPDTHMY 316
            T  +    KRM+  G  P +  + +  +  CL G+ +  A + +  +    G  PD   Y
Sbjct: 944  TETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGR-VDEALYYFNEL-KSTGLDPDFIAY 1001

Query: 317  NMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK 376
            N +I+    S     A+ L +EM   G  PD+ TYN L   L     + +A  ++ E+  
Sbjct: 1002 NRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQL 1061

Query: 377  NENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCS 415
                 +     A +R Y  S++P  A   +K M+ + C+
Sbjct: 1062 AGLEPDVFTYNALIRGYSLSENPEHAYTVYKNMMVDGCN 1100



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 70/327 (21%), Positives = 138/327 (42%), Gaps = 44/327 (13%)

Query: 90  WSAYQLNDKHSP--YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYV 146
           WS  +  D + P    + ++VD+L K   FD  +     M+K+ +L +L T+ ++    +
Sbjct: 355 WSQME-ADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLL 413

Query: 147 VADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVD--------- 197
            A R++DA+   D ME  G +   +   + +    + G+T  A +    +          
Sbjct: 414 RAGRIEDALKLLDTMESVGVQPTAYTYITFIDYFGKSGETGKAVETFEKMKAKGIVPNIV 473

Query: 198 ------------GRIK---------------PDNDTYAILLEGWEKERDVANAKKTFGEM 230
                       GR++               PD+ TY ++++ + K   V  A     EM
Sbjct: 474 ACNASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEM 533

Query: 231 VIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTG 290
            I  G +PD V   +S + +L K    + E      RM +   +P +  +          
Sbjct: 534 -IRNGCEPD-VIVVNSLIDSLYKA-GRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKE 590

Query: 291 QNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQT 350
             ++ A  ++ +M+ +    P+T  +N ++  +C ++E   A+K+  +M      PD+ T
Sbjct: 591 GRVQKAIELFESMIXK-KCSPNTISFNTLLDCFCKNDEVELALKMFSKMTVMDCKPDVLT 649

Query: 351 YNILFEFLVKGRKLWEASGLFNEMVKN 377
           YN +   L+K  K+  A   F+++ K+
Sbjct: 650 YNTVIYGLIKENKVNHAFWFFHQLKKS 676



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 62/268 (23%), Positives = 111/268 (41%), Gaps = 5/268 (1%)

Query: 148 ADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDT 206
           A ++ +A   F  M+  GC  D+     L+ A+C  G+  +A + F+++     KPD   
Sbjct: 275 AGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELFVKMKANGHKPDQVI 334

Query: 207 YAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLK 266
           Y  LL+ +    D+   K+ + +M  + G+ PD V    + L+ +L       E   +  
Sbjct: 335 YITLLDKFNDFGDLDTFKEFWSQMEAD-GYMPDVVTF--TILVDVLCKARDFDEAFATFD 391

Query: 267 RMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYS 326
            M ++G  P +  +       L    +  A  +   M   +G +P  + Y   I  +  S
Sbjct: 392 VMRKQGILPNLHTYNTLICGLLRAGRIEDALKLLDTMES-VGVQPTAYTYITFIDYFGKS 450

Query: 327 NETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENC 386
            ETG A++  ++M   G  P+I   N     L +  +L EA  +FN + +N    +    
Sbjct: 451 GETGKAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTY 510

Query: 387 RAAVRVYMDSDDPYVAIKFWKYMIENHC 414
              ++ Y        A+     MI N C
Sbjct: 511 NMMMKCYSKVGQVDEAVNLLSEMIRNGC 538



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 89/403 (22%), Positives = 157/403 (38%), Gaps = 64/403 (15%)

Query: 98  KHSP--YAWNLVVDLLGKNCLFDAMWDAIKSM-KKENVLSLATFASVFSSYVVADRVKDA 154
           K SP    +N ++  LGK        +  +SM  K+   +  +F ++   +   D V+ A
Sbjct: 572 KLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIXKKCSPNTISFNTLLDCFCKNDEVELA 631

Query: 155 ITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGW 214
           +  F  M    CK DV   N+++  + ++ K   A+ F   +   + PD+ T   LL G 
Sbjct: 632 LKMFSKMTVMDCKPDVLTYNTVIYGLIKENKVNHAFWFFHQLKKSMHPDHVTICTLLPGL 691

Query: 215 EKERDVANA---------------KKTF-----GEMVIEVGWDP----------DNVPAY 244
            K   + +A                ++F     G  ++E   D           + +   
Sbjct: 692 VKCGQIGDAISIARDFMYQVRFRVNRSFWEDLMGGTLVEAEMDKAIIFAEELVLNGICRE 751

Query: 245 DSYLITLLKG-CDG-----IYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRG--A 296
           DS+LI L++  C        Y+  +   + +  G +P      LA   CL G+ L     
Sbjct: 752 DSFLIPLVRVLCKHKRELYAYQIFDKFTKKL--GISP-----TLASYNCLIGELLEVHYT 804

Query: 297 EFIWGAM--VGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNIL 354
           E  W     +  +G  PD   +NM+++++  S +     +L  EM+     PD  TYNI+
Sbjct: 805 EKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFELYKEMISRRCKPDAITYNIV 864

Query: 355 FEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYV-------AIKFWK 407
              L K   L +A   F ++V ++        R   R Y    D          A++ ++
Sbjct: 865 ISSLAKSNNLDKALDFFYDLVSSD-------FRPTPRTYGPLIDGLAKVGRLEEAMRLFE 917

Query: 408 YMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQ 450
            M +  C       N+L+ G   +     A +  K M  +GI+
Sbjct: 918 EMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNEGIR 960



 Score = 41.2 bits (95), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 58/258 (22%), Positives = 101/258 (39%), Gaps = 20/258 (7%)

Query: 200 IKPDNDTYAILLE------GWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLK 253
           I+ D DTY  + +      G  +   V N  +  G ++        N  +Y+  LI LL 
Sbjct: 153 IRRDLDTYLTIFKALSIRGGLRQMTTVLNKMRKAGFVL--------NAYSYNG-LIHLLI 203

Query: 254 GCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAM--VGRIGFRP 311
                 E +   +RM+  G  P +  +  A    L  +  R +E +   +  +  +G RP
Sbjct: 204 QSGFCGEALEVYRRMVSEGLKPSLKTYS-ALMVALGKK--RDSEMVMVLLKEMEDLGLRP 260

Query: 312 DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLF 371
           + + + + I +   + +   A ++   M   G  PD+ TY +L + L    +L  A  LF
Sbjct: 261 NVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELF 320

Query: 372 NEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDM 431
            +M  N +  +       +  + D  D     +FW  M  +       T  +LV  LC  
Sbjct: 321 VKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKA 380

Query: 432 HMLPEAVKYAKGMAEKGI 449
               EA      M ++GI
Sbjct: 381 RDFDEAFATFDVMRKQGI 398


>gi|297801450|ref|XP_002868609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314445|gb|EFH44868.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 526

 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/265 (26%), Positives = 123/265 (46%), Gaps = 18/265 (6%)

Query: 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR 194
           +  + ++  S      V +A++ F+ ME YG + DV    SL++ +C  G+  DA   LR
Sbjct: 176 VVIYTTIIDSLCKNGHVDNALSLFNQMENYGIRPDVVMYTSLVNGLCNSGRWRDADLLLR 235

Query: 195 -VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLK 253
            ++  +IKPD  T+  L++ + KE  + +AK+ + EM I++   P N+  Y S +  L  
Sbjct: 236 GMMKRKIKPDVITFNALIDAFVKEGKLLDAKELYNEM-IQMSIAP-NIFTYTSLINGLCM 293

Query: 254 GCDGIYETVNSLKRMME-RGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD 312
             +G  +    +  +ME +GC P +  +          + +  A  I+  M  + G   +
Sbjct: 294 --EGRLDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVEDAMKIFYEMSQK-GLTGN 350

Query: 313 THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFN 372
           T  Y  +I  +    +   A ++   MV  G  P+I+TYN+L   L    K+ +A  +F 
Sbjct: 351 TITYTTLIQGFGLVGKPNVAQEVFGHMVSRGVPPNIRTYNVLLHCLCYNGKVNKALMIFE 410

Query: 373 EMVKNE-----------NVLNHENC 386
           +M K E           NVL H  C
Sbjct: 411 DMQKREIDGVPPNIRTYNVLLHGLC 435



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 73/320 (22%), Positives = 126/320 (39%), Gaps = 46/320 (14%)

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERD 219
           ++  G  +D++  N L++  C+  +   A  FL +++    +PD  T+  L+ G+     
Sbjct: 97  LQIMGVSNDLYTCNLLMNCFCQSSQPCLASSFLGKLMKLGFEPDIFTFTSLINGFCLGNR 156

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTF 279
           +  A     +MV E+G  PD V  Y + + +L K  +G  +   SL   ME         
Sbjct: 157 IEEAMSMVNQMV-EMGIKPD-VVIYTTIIDSLCK--NGHVDNALSLFNQMEN-------- 204

Query: 280 FKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEM 339
                                       G RPD  MY  +++  C S     A  LL  M
Sbjct: 205 ---------------------------YGIRPDVVMYTSLVNGLCNSGRWRDADLLLRGM 237

Query: 340 VYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNE---NVLNHENCRAAVRVYMDS 396
           +     PD+ T+N L +  VK  KL +A  L+NEM++     N+  + +    + +    
Sbjct: 238 MKRKIKPDVITFNALIDAFVKEGKLLDAKELYNEMIQMSIAPNIFTYTSLINGLCMEGRL 297

Query: 397 DDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFAL 456
           D+   A + +  M    C         L+ G C    + +A+K    M++KG+       
Sbjct: 298 DE---ARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVEDAMKIFYEMSQKGLTGNTITY 354

Query: 457 SKLKQILIKARKEAVYEELL 476
           + L Q      K  V +E+ 
Sbjct: 355 TTLIQGFGLVGKPNVAQEVF 374



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 57/245 (23%), Positives = 102/245 (41%), Gaps = 8/245 (3%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-F 192
           ++ T+ S+ +   +  R+ +A   F +ME  GC  DV A  SL++  C+  K  DA + F
Sbjct: 280 NIFTYTSLINGLCMEGRLDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVEDAMKIF 339

Query: 193 LRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
             +    +  +  TY  L++G+        A++ FG MV      P N+  Y+  L  L 
Sbjct: 340 YEMSQKGLTGNTITYTTLIQGFGLVGKPNVAQEVFGHMVSR--GVPPNIRTYNVLLHCLC 397

Query: 253 KGCDGIYETVNSLKRMMER---GCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGF 309
                + + +   + M +R   G  P +  + +          L  A  ++G M  R   
Sbjct: 398 YN-GKVNKALMIFEDMQKREIDGVPPNIRTYNVLLHGLCYNGKLEKALMVFGDMQKR-DM 455

Query: 310 RPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASG 369
                 Y ++I   C + +   A+ L   +   G  P++ TY  +   L +   + EA  
Sbjct: 456 DIGIITYTIIIQGMCKAGKVKDALNLFCSLPSKGVKPNVVTYTTMISGLFREGLMLEAHV 515

Query: 370 LFNEM 374
           LF +M
Sbjct: 516 LFRKM 520


>gi|449455685|ref|XP_004145582.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic-like [Cucumis sativus]
          Length = 1113

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 82/340 (24%), Positives = 149/340 (43%), Gaps = 8/340 (2%)

Query: 40  KTLCEIIANTPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKH 99
           K  C +    P   V  V  KT IRVS++ V  VLK S + P  A+ +F   +      H
Sbjct: 63  KDFCRLALQNPE-QVMVVKGKTEIRVSEDEVLGVLK-SMTDPIRALSYFYSISEFPTVLH 120

Query: 100 SPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTF 158
           +    N +++ L  +   + M    + M+K+ +   L T+ ++F +  +   ++   T  
Sbjct: 121 TTETCNFMLEFLRVHDKVEDMAAVFEFMQKKIIRRDLDTYLTIFKALSIRGGLRQMTTVL 180

Query: 159 DVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKE 217
           + M + G   + ++ N L+  + + G   +A + + R+V   +KP   TY+ L+    K+
Sbjct: 181 NKMRKAGFVLNAYSYNGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALGKK 240

Query: 218 RDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGM 277
           RD         EM  ++G  P NV  + +  I +L     I E     +RM + GC P +
Sbjct: 241 RDSEMVMVLLKEME-DLGLRP-NVYTF-TICIRVLGRAGKIDEAYEIFRRMDDEGCGPDL 297

Query: 278 TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLD 337
             + +  +       L  A+ ++  M    G +PD  +Y  ++  +    +     +   
Sbjct: 298 VTYTVLIDALCNAGQLENAKELFVKMKAN-GHKPDQVIYITLLDKFNDFGDLDTFKEFWS 356

Query: 338 EMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKN 377
           +M  +G  PD+ T+ IL + L K R   EA   F+ M K 
Sbjct: 357 QMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQ 396



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 61/244 (25%), Positives = 103/244 (42%), Gaps = 9/244 (3%)

Query: 134  SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
            +LA++  +    +     + A   F  M+  GC  D F  N LL+   + GK  + ++  
Sbjct: 787  TLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFELY 846

Query: 194  R-VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSY--LIT 250
            + ++  R KPD  TY I++    K  ++  A   F ++V       D  P   +Y  LI 
Sbjct: 847  KEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLV-----SSDFRPTPRTYGPLID 901

Query: 251  LLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFR 310
             L     + E +   + M + GC P    F +         +   A  ++  MV   G R
Sbjct: 902  GLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNE-GIR 960

Query: 311  PDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGL 370
            PD   Y +++   C +     A+   +E+   G  PD   YN +   L K +++ EA  L
Sbjct: 961  PDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEALAL 1020

Query: 371  FNEM 374
            +NEM
Sbjct: 1021 YNEM 1024



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 64/268 (23%), Positives = 114/268 (42%), Gaps = 5/268 (1%)

Query: 148 ADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDT 206
           A ++ +A   F  M+  GC  D+     L+ A+C  G+  +A + F+++     KPD   
Sbjct: 275 AGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELFVKMKANGHKPDQVI 334

Query: 207 YAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLK 266
           Y  LL+ +    D+   K+ + +M  + G+ PD V    + L+ +L       E   +  
Sbjct: 335 YITLLDKFNDFGDLDTFKEFWSQMEAD-GYMPDVVTF--TILVDVLCKARDFDEAFATFD 391

Query: 267 RMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYS 326
            M ++G  P +  +       L    +  A  + G M   +G +P  + YN+ I  +  S
Sbjct: 392 VMRKQGILPNLHTYNTLICGLLRAGRIEDALKLLGTM-ESVGVQPTAYTYNIFIDYFGKS 450

Query: 327 NETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENC 386
            ETG A++  ++M   G  P+I   N     L +  +L EA  +FN + +N    +    
Sbjct: 451 GETGKAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTY 510

Query: 387 RAAVRVYMDSDDPYVAIKFWKYMIENHC 414
              ++ Y        A+     MI N C
Sbjct: 511 NMMMKCYSKVGQVDEAVNLLSEMIRNGC 538



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 73/299 (24%), Positives = 125/299 (41%), Gaps = 46/299 (15%)

Query: 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR 194
           + TF  +      A    +A  TFDVM + G   ++   N+L+  + R G+  DA + L 
Sbjct: 367 VVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLLG 426

Query: 195 VVDG-RIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLK 253
            ++   ++P   TY I ++ + K  +   A +TF +M  + G  P+ V            
Sbjct: 427 TMESVGVQPTAYTYNIFIDYFGKSGETGKAVETFEKMKAK-GIVPNIV------------ 473

Query: 254 GCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDT 313
            C+       SL  + E G                    LR A+ ++  +    G  PD+
Sbjct: 474 ACNA------SLYSLAEMG-------------------RLREAKTMFNGLREN-GLAPDS 507

Query: 314 HMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFN- 372
             YNMM+  Y    +   A+ LL EM+ NG  PD+   N L + L K  ++ EA  +F+ 
Sbjct: 508 VTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDR 567

Query: 373 --EMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLC 429
             +M  +  V+ +    + +           AI+ ++ MIE  CS  + + N L+   C
Sbjct: 568 MKDMKLSPTVVTYNTLLSGLG---KEGRVQKAIELFESMIEKKCSPNTISFNTLLDCFC 623



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 74/282 (26%), Positives = 117/282 (41%), Gaps = 16/282 (5%)

Query: 78   YSHPGPAVKFFRWSAYQLNDKHSPYA--WNLVVDLLGKNCLFDAMWDAIKSMKKENVL-S 134
            +   G   + F      ++ +  P A  +N+V+  L K+   D   D    +   +   +
Sbjct: 833  HGKSGKITELFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPT 892

Query: 135  LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FL 193
              T+  +        R+++A+  F+ M  YGCK +    N L++   + G T  A Q F 
Sbjct: 893  PRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFK 952

Query: 194  RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLK 253
            R+V+  I+PD  +Y IL++       V  A   F E+    G DPD + AY+  +I  L 
Sbjct: 953  RMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELK-STGLDPDFI-AYNR-IINGLG 1009

Query: 254  GCDGIYETVNSLKRMMERGCNPGM-TFFKLAFEECLTG---QNLRGAEFIWGAMVGRIGF 309
                + E +     M  RG  P + T+  L     L G   Q  R  E +  A     G 
Sbjct: 1010 KSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLA-----GL 1064

Query: 310  RPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTY 351
             PD   YN +I  Y  S     A  +   M+ +G  P+I TY
Sbjct: 1065 EPDVFTYNALIRGYSLSENPEHAYTVYKNMMVDGCNPNIGTY 1106



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 82/339 (24%), Positives = 139/339 (41%), Gaps = 24/339 (7%)

Query: 92   AYQLNDKHSPYAWNLVVDLLGKNCLFDAM---------WDAIKSMKKENVLSLA-TFASV 141
            AYQ+ DK +     +   L   NCL   +         WD  K MK       A TF  +
Sbjct: 771  AYQIFDKFTK-KLGISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNML 829

Query: 142  FSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGRI 200
             + +  + ++ +    +  M    CK D    N ++S++ +      A  F   +V    
Sbjct: 830  LAVHGKSGKITELFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDF 889

Query: 201  KPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYE 260
            +P   TY  L++G  K   +  A + F EM  + G  P N   ++     L+ G   I +
Sbjct: 890  RPTPRTYGPLIDGLAKVGRLEEAMRLFEEMS-DYGCKP-NCAIFN----ILINGYGKIGD 943

Query: 261  TVNS---LKRMMERGCNPGMTFFKLAFE-ECLTGQNLRGAEFIWGAMVGRIGFRPDTHMY 316
            T  +    KRM+  G  P +  + +  +  CL G+ +  A + +  +    G  PD   Y
Sbjct: 944  TETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGR-VDEALYYFNEL-KSTGLDPDFIAY 1001

Query: 317  NMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK 376
            N +I+    S     A+ L +EM   G  PD+ TYN L   L     + +A  ++ E+  
Sbjct: 1002 NRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQL 1061

Query: 377  NENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCS 415
                 +     A +R Y  S++P  A   +K M+ + C+
Sbjct: 1062 AGLEPDVFTYNALIRGYSLSENPEHAYTVYKNMMVDGCN 1100



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 70/327 (21%), Positives = 137/327 (41%), Gaps = 44/327 (13%)

Query: 90  WSAYQLNDKHSP--YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYV 146
           WS  +  D + P    + ++VD+L K   FD  +     M+K+ +L +L T+ ++    +
Sbjct: 355 WSQME-ADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLL 413

Query: 147 VADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVD--------- 197
            A R++DA+     ME  G +   +  N  +    + G+T  A +    +          
Sbjct: 414 RAGRIEDALKLLGTMESVGVQPTAYTYNIFIDYFGKSGETGKAVETFEKMKAKGIVPNIV 473

Query: 198 ------------GRIK---------------PDNDTYAILLEGWEKERDVANAKKTFGEM 230
                       GR++               PD+ TY ++++ + K   V  A     EM
Sbjct: 474 ACNASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEM 533

Query: 231 VIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTG 290
            I  G +PD V   +S + +L K    + E      RM +   +P +  +          
Sbjct: 534 -IRNGCEPD-VIVVNSLIDSLYKA-GRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKE 590

Query: 291 QNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQT 350
             ++ A  ++ +M+ +    P+T  +N ++  +C ++E   A+K+  +M      PD+ T
Sbjct: 591 GRVQKAIELFESMIEK-KCSPNTISFNTLLDCFCKNDEVELALKMFSKMTVMDCKPDVLT 649

Query: 351 YNILFEFLVKGRKLWEASGLFNEMVKN 377
           YN +   L+K  K+  A   F+++ K+
Sbjct: 650 YNTVIYGLIKENKVNHAFWFFHQLKKS 676



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 89/403 (22%), Positives = 158/403 (39%), Gaps = 64/403 (15%)

Query: 98  KHSP--YAWNLVVDLLGKNCLFDAMWDAIKSM-KKENVLSLATFASVFSSYVVADRVKDA 154
           K SP    +N ++  LGK        +  +SM +K+   +  +F ++   +   D V+ A
Sbjct: 572 KLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIEKKCSPNTISFNTLLDCFCKNDEVELA 631

Query: 155 ITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGW 214
           +  F  M    CK DV   N+++  + ++ K   A+ F   +   + PD+ T   LL G 
Sbjct: 632 LKMFSKMTVMDCKPDVLTYNTVIYGLIKENKVNHAFWFFHQLKKSMHPDHVTICTLLPGL 691

Query: 215 EKERDVANA---------------KKTF-----GEMVIEVGWDP----------DNVPAY 244
            K   + +A                ++F     G  ++E   D           + +   
Sbjct: 692 VKCGQIGDAISIARDFMYQVRFRVNRSFWEDLMGGTLVEAEMDKAIIFAEELVLNGICRE 751

Query: 245 DSYLITLLKG-CDG-----IYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRG--A 296
           DS+LI L++  C        Y+  +   + +  G +P      LA   CL G+ L     
Sbjct: 752 DSFLIPLVRVLCKHKRELYAYQIFDKFTKKL--GISP-----TLASYNCLIGELLEVHYT 804

Query: 297 EFIWGAM--VGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNIL 354
           E  W     +  +G  PD   +NM+++++  S +     +L  EM+     PD  TYNI+
Sbjct: 805 EKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFELYKEMISRRCKPDAITYNIV 864

Query: 355 FEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYV-------AIKFWK 407
              L K   L +A   F ++V ++        R   R Y    D          A++ ++
Sbjct: 865 ISSLAKSNNLDKALDFFYDLVSSD-------FRPTPRTYGPLIDGLAKVGRLEEAMRLFE 917

Query: 408 YMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQ 450
            M +  C       N+L+ G   +     A +  K M  +GI+
Sbjct: 918 EMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNEGIR 960



 Score = 40.8 bits (94), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 58/258 (22%), Positives = 101/258 (39%), Gaps = 20/258 (7%)

Query: 200 IKPDNDTYAILLE------GWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLK 253
           I+ D DTY  + +      G  +   V N  +  G ++        N  +Y+  LI LL 
Sbjct: 153 IRRDLDTYLTIFKALSIRGGLRQMTTVLNKMRKAGFVL--------NAYSYNG-LIHLLI 203

Query: 254 GCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAM--VGRIGFRP 311
                 E +   +RM+  G  P +  +  A    L  +  R +E +   +  +  +G RP
Sbjct: 204 QSGFCGEALEVYRRMVSEGLKPSLKTYS-ALMVALGKK--RDSEMVMVLLKEMEDLGLRP 260

Query: 312 DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLF 371
           + + + + I +   + +   A ++   M   G  PD+ TY +L + L    +L  A  LF
Sbjct: 261 NVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELF 320

Query: 372 NEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDM 431
            +M  N +  +       +  + D  D     +FW  M  +       T  +LV  LC  
Sbjct: 321 VKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKA 380

Query: 432 HMLPEAVKYAKGMAEKGI 449
               EA      M ++GI
Sbjct: 381 RDFDEAFATFDVMRKQGI 398


>gi|449436637|ref|XP_004136099.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80880,
           mitochondrial-like [Cucumis sativus]
 gi|449509164|ref|XP_004163514.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80880,
           mitochondrial-like [Cucumis sativus]
          Length = 547

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 83/369 (22%), Positives = 151/369 (40%), Gaps = 31/369 (8%)

Query: 105 NLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQY 164
           NL++ +LG +  F   W  I+ +    + S+     +   Y  A+    AI TF +ME++
Sbjct: 151 NLMIWVLGNHKKFSTAWSLIRELHGSLLNSMQAMLVMIDRYAYANEASKAIKTFHMMEKF 210

Query: 165 GCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGW-EKERDVANA 223
               D  A + LL+++C+ G   +A +F+ V         +++ I+L GW     DV  A
Sbjct: 211 RLTPDQEAFHVLLNSLCKYGNIEEAEEFMFVNKKLFPLGTESFNIILNGWCNVTVDVFEA 270

Query: 224 KKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLA 283
           K+ + EM  +    PD+     +++I+       +++++    +M +R   P +  +  +
Sbjct: 271 KRIWREMS-KCCILPDSTSY--THMISCFSKNGNLFDSLRFYDQMKKRDWIPSVEVYN-S 326

Query: 284 FEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNG 343
               LT +N           +  +G RPD+  YN +IS  C + +   A  +L  M  + 
Sbjct: 327 LAYVLTRENCFNEALKILEKIKEVGLRPDSTTYNSLISPLCEAGKLDEAKDVLTMMTEDN 386

Query: 344 AFPDIQTYN---------ILFEFLVKGRK--LWEASGLFNEMVKNENVLNHENCRAAVRV 392
             P I+TY+         + FE L + R+  L    G F  M                  
Sbjct: 387 ISPTIETYHSFIQAADSKMSFELLKRMRQDGLGPTEGTFLIMFNKS-------------- 432

Query: 393 YMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVT 452
             + ++P  A+  W  M         E  ++L+ GL     L +A +    M   G    
Sbjct: 433 -FELEEPEYALNVWVEMKRYEVFPSCEHYSVLIQGLATCGHLKKARELYDEMILHGFIAH 491

Query: 453 PFALSKLKQ 461
           P   + LK+
Sbjct: 492 PKIKTLLKE 500


>gi|449530359|ref|XP_004172163.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Cucumis sativus]
          Length = 831

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 94/373 (25%), Positives = 158/373 (42%), Gaps = 48/373 (12%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKEN-VLSLATFASVFSSYVVADRVKDAITTFDVM 161
            WN ++ + G+N +   +    K MK+   V    TF ++ S+Y        A+  +  M
Sbjct: 468 TWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGFFDQAMAIYRRM 527

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLE----GWEK 216
              G   D+   N++L+A+ R G    + + L  + DGR KP+  TY  LL     G E 
Sbjct: 528 LDAGVTPDLSTYNAVLAALARGGLWEQSEKVLAEMKDGRCKPNELTYCSLLHAYANGKEV 587

Query: 217 ERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPG 276
           ER  A A++ +  ++     +P  V      L+ +    D + ET  +   + E+G +P 
Sbjct: 588 ERMSALAEEIYSGII-----EPQAVLL--KTLVLVYSKSDLLTETERAFLELREQGFSPD 640

Query: 277 MTFFKLAFEECLTGQNLRGAEFIWGA--MVGRI----------GFRPDTHMYNMMISLYC 324
           +T              L     I+G   MV +           GF P    YN ++ +Y 
Sbjct: 641 IT-------------TLNAMVSIYGRRRMVSKTNEILNFIKDSGFTPSLTTYNSLMYMYS 687

Query: 325 YSNETGAAMKLLDEMVYNGAFPDIQTYN-ILFEFLVKGRKLWEASGLFNEMVK---NENV 380
            +     +  +L E++  G  PDI ++N ++F +   GR + EAS +F EM       +V
Sbjct: 688 RTEHFEKSEDILREIIAKGMKPDIISFNTVIFAYCRNGR-MKEASRIFAEMKDFGLAPDV 746

Query: 381 LNHENCRAAVRVYMDSDDPYV-AIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVK 439
           + +    A+      SD  ++ AI   KYMI+N C     T N L+   C ++   EA  
Sbjct: 747 ITYNTFIASYA----SDSMFIEAIDVVKYMIKNECKPNQNTYNSLIDWFCKLNRRDEANS 802

Query: 440 YAKGMAEKGIQVT 452
           +   +      VT
Sbjct: 803 FISNLRNLDPSVT 815



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 74/271 (27%), Positives = 119/271 (43%), Gaps = 11/271 (4%)

Query: 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDV 160
           Y +N ++    +  L++   +  + MK         T+ ++   Y  + R ++A+     
Sbjct: 292 YTYNTLISSCRRGSLYEEAAEVFEEMKAAGFSPDKVTYNALLDVYGKSRRPREAMEVLKE 351

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQF-LRVVDGRIKPDNDTYAILLEGWEKERD 219
           ME  G    +   NSL+SA  RDG   +A +   ++V   IKPD  TY  LL G+EK   
Sbjct: 352 MEASGFAPSIVTYNSLISAYARDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSGFEKTGK 411

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTF 279
              A K F EM +  G  P N+  +++ LI +        E +   + +    C P +  
Sbjct: 412 DDYAMKVFEEMRV-AGCQP-NICTFNA-LIKMHGNRGNFVEMMKVFEEIKICECVPDIVT 468

Query: 280 FKLAFEECLTGQNLRGAEFIWGAM--VGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLD 337
           +       + GQN   +E + G    + R GF P+   +N +IS Y        AM +  
Sbjct: 469 WNTLL--AVFGQNGMDSE-VSGVFKEMKRAGFVPERDTFNTLISAYSRCGFFDQAMAIYR 525

Query: 338 EMVYNGAFPDIQTYNILFEFLVKGRKLWEAS 368
            M+  G  PD+ TYN +   L +G  LWE S
Sbjct: 526 RMLDAGVTPDLSTYNAVLAALARG-GLWEQS 555



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 66/277 (23%), Positives = 117/277 (42%), Gaps = 20/277 (7%)

Query: 106 LVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASVFSSYVVADRVKDAITTFDVMEQY 164
           +++ +LGK          +  ++ + V + +  + S+ ++Y    R ++A+  F  +E+ 
Sbjct: 190 VIISVLGKEGRASFAASLLHDLRNDGVHIDIYAYTSLITAYASNGRYREAVMVFKKLEEE 249

Query: 165 GCKHDVFALNSLLSAICRDGKTIDAW-QFLRVVDGR----IKPDNDTYAILLEGWEKERD 219
           GC+  +   N +L+     GK    W +   +VD      + PD  TY  L+    +   
Sbjct: 250 GCRPTLITYNVILNVY---GKMGMPWSKIAGLVDSMKSSGVAPDLYTYNTLISSCRRGSL 306

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTF 279
              A + F EM    G+ PD V  Y++ L+ +        E +  LK M   G  P +  
Sbjct: 307 YEEAAEVFEEMK-AAGFSPDKV-TYNA-LLDVYGKSRRPREAMEVLKEMEASGFAPSIVT 363

Query: 280 FKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEM 339
           +            L  A  +   MV + G +PD   Y  ++S +  + +   AMK+ +EM
Sbjct: 364 YNSLISAYARDGLLDEAMELKSQMVKK-GIKPDVFTYTTLLSGFEKTGKDDYAMKVFEEM 422

Query: 340 VYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK 376
              G  P+I T+N L        K+    G F EM+K
Sbjct: 423 RVAGCQPNICTFNALI-------KMHGNRGNFVEMMK 452



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 62/249 (24%), Positives = 97/249 (38%), Gaps = 48/249 (19%)

Query: 138 FASVFSSYVVA---------DRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTID 188
           FAS+ S+ VVA          R   A +    +   G   D++A  SL++A   +G+  +
Sbjct: 179 FASILSNSVVAVIISVLGKEGRASFAASLLHDLRNDGVHIDIYAYTSLITAYASNGRYRE 238

Query: 189 AWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSY 247
           A   F ++ +   +P   TY ++L               +G+M +   W           
Sbjct: 239 AVMVFKKLEEEGCRPTLITYNVIL-------------NVYGKMGMP--WSK--------- 274

Query: 248 LITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRI 307
                     I   V+S+K     G  P +  +      C  G     A  ++  M    
Sbjct: 275 ----------IAGLVDSMK---SSGVAPDLYTYNTLISSCRRGSLYEEAAEVFEEMKA-A 320

Query: 308 GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEA 367
           GF PD   YN ++ +Y  S     AM++L EM  +G  P I TYN L     +   L EA
Sbjct: 321 GFSPDKVTYNALLDVYGKSRRPREAMEVLKEMEASGFAPSIVTYNSLISAYARDGLLDEA 380

Query: 368 SGLFNEMVK 376
             L ++MVK
Sbjct: 381 MELKSQMVK 389


>gi|242084804|ref|XP_002442827.1| hypothetical protein SORBIDRAFT_08g003450 [Sorghum bicolor]
 gi|241943520|gb|EES16665.1| hypothetical protein SORBIDRAFT_08g003450 [Sorghum bicolor]
          Length = 899

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/287 (23%), Positives = 130/287 (45%), Gaps = 15/287 (5%)

Query: 96  NDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDA 154
           N K    A+ +++++L K C F    + +  M    +  ++  + S+   Y    +V  A
Sbjct: 329 NCKLDLQAYGVLINVLIKKCRFKEAKETVSEMFANGLAPNVVIYTSIIDGYCKVGKVGAA 388

Query: 155 ITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEG 213
           +  F +ME  GC+ + +  +SL+  + +D K   A   + ++ +  I P   TY  L++G
Sbjct: 389 LEVFRLMEHEGCRPNAWTYSSLIYGLIQDQKLHKAMALITKMQEDGITPGVITYTTLIQG 448

Query: 214 WEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGC 273
             K+ +  NA + F EM+ + G  PD   AY+     L K   G  E   S         
Sbjct: 449 QCKKHEFDNAFRLF-EMMEQNGLTPDE-QAYNVLTHALCK--SGRAEEAYSFL------V 498

Query: 274 NPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRI---GFRPDTHMYNMMISLYCYSNETG 330
             G+   K+ +   + G +  G       ++ ++   G + D++ Y++++   C   +  
Sbjct: 499 RKGVVLTKVTYTSLVDGFSKAGNTDFAAVLIEKMVNEGCKADSYTYSVLLQALCKQKKLN 558

Query: 331 AAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKN 377
            A+ +LD+M  +G   +I  Y I+   ++K  K   A  +FNEM+ +
Sbjct: 559 EALSILDQMTLSGVKCNIVAYTIIISEMIKEGKHDHAKSMFNEMISS 605



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 92/403 (22%), Positives = 152/403 (37%), Gaps = 43/403 (10%)

Query: 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDV 160
           + + L++  L K          ++ M    V+ S+ T+ ++   Y  + R+KDA+    +
Sbjct: 196 HTYTLLIKGLCKEGRIHGARRVLEEMPLRGVVPSVWTYNAMIDGYCKSGRMKDALGIKAL 255

Query: 161 MEQYGCKHDVFALNSLLSAICRD---------------GKTIDAWQFLRVVDG------- 198
           ME+ GC  D +  N L+  +C +               G T     F  +++G       
Sbjct: 256 MERNGCNPDDWTYNILIYGLCGEKPDEAEELLNDAIVRGFTPTVITFTNIINGYCKAERI 315

Query: 199 ----RIKP---------DNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYD 245
               R+K          D   Y +L+    K+     AK+T  EM    G  P NV  Y 
Sbjct: 316 DDALRVKTSMLSSNCKLDLQAYGVLINVLIKKCRFKEAKETVSEMFAN-GLAP-NVVIYT 373

Query: 246 SYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVG 305
           S +    K    +   +   + M   GC P    +       +  Q L  A  +   M  
Sbjct: 374 SIIDGYCK-VGKVGAALEVFRLMEHEGCRPNAWTYSSLIYGLIQDQKLHKAMALITKM-Q 431

Query: 306 RIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLW 365
             G  P    Y  +I   C  +E   A +L + M  NG  PD Q YN+L   L K  +  
Sbjct: 432 EDGITPGVITYTTLIQGQCKKHEFDNAFRLFEMMEQNGLTPDEQAYNVLTHALCKSGRAE 491

Query: 366 EASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLV 425
           EA   ++ +V+   VL      + V  +  + +   A    + M+   C   S T ++L+
Sbjct: 492 EA---YSFLVRKGVVLTKVTYTSLVDGFSKAGNTDFAAVLIEKMVNEGCKADSYTYSVLL 548

Query: 426 AGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARK 468
             LC    L EA+     M   G++    A + +   +IK  K
Sbjct: 549 QALCKQKKLNEALSILDQMTLSGVKCNIVAYTIIISEMIKEGK 591



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 91/395 (23%), Positives = 165/395 (41%), Gaps = 17/395 (4%)

Query: 81  PGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKN---CLFDAMWDAIKSMKKENVLSLAT 137
           P  A+ FF W A +   +H+  +   ++ LL +      +D +  ++ S           
Sbjct: 68  PATALAFFEWVARRPGFRHTAASHAALLQLLARRRAPANYDKLVVSMVSCSDTAEDMREA 127

Query: 138 FASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL--RV 195
             ++ +   V   ++ A     +M   GC+ + ++   L+  +C      +A   L   V
Sbjct: 128 VDAIQAIRRVGGDLRKACWLLMMMPLMGCRRNEYSYTILIQGLCETRCVREALVLLVMMV 187

Query: 196 VDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
            DG    +  TY +L++G  KE  +  A++   EM +  G  P +V  Y++ +    K  
Sbjct: 188 QDG-CSLNLHTYTLLIKGLCKEGRIHGARRVLEEMPLR-GVVP-SVWTYNAMIDGYCK-- 242

Query: 256 DGIYETVNSLKRMMER-GCNPG-MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDT 313
            G  +    +K +MER GCNP   T+  L +  C  G+    AE +    + R GF P  
Sbjct: 243 SGRMKDALGIKALMERNGCNPDDWTYNILIYGLC--GEKPDEAEELLNDAIVR-GFTPTV 299

Query: 314 HMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNE 373
             +  +I+ YC +     A+++   M+ +    D+Q Y +L   L+K  +  EA    +E
Sbjct: 300 ITFTNIINGYCKAERIDDALRVKTSMLSSNCKLDLQAYGVLINVLIKKCRFKEAKETVSE 359

Query: 374 MVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHM 433
           M  N    N     + +  Y        A++ ++ M    C   + T + L+ GL     
Sbjct: 360 MFANGLAPNVVIYTSIIDGYCKVGKVGAALEVFRLMEHEGCRPNAWTYSSLIYGLIQDQK 419

Query: 434 LPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARK 468
           L +A+     M E GI  TP  ++    I  + +K
Sbjct: 420 LHKAMALITKMQEDGI--TPGVITYTTLIQGQCKK 452



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 71/278 (25%), Positives = 120/278 (43%), Gaps = 14/278 (5%)

Query: 82  GPAVKFFRWSAYQLNDKHSPYAW---NLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLAT 137
           G A++ FR   ++      P AW   +L+  L+    L  AM   I  M+++ +   + T
Sbjct: 386 GAALEVFRLMEHE---GCRPNAWTYSSLIYGLIQDQKLHKAM-ALITKMQEDGITPGVIT 441

Query: 138 FASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVD 197
           + ++           +A   F++MEQ G   D  A N L  A+C+ G+  +A+ FL  V 
Sbjct: 442 YTTLIQGQCKKHEFDNAFRLFEMMEQNGLTPDEQAYNVLTHALCKSGRAEEAYSFL--VR 499

Query: 198 GRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDG 257
             +     TY  L++G+ K  +   A     +MV E G   D+   Y   L  L K    
Sbjct: 500 KGVVLTKVTYTSLVDGFSKAGNTDFAAVLIEKMVNE-GCKADSY-TYSVLLQALCKQ-KK 556

Query: 258 IYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYN 317
           + E ++ L +M   G    +  + +   E +       A+ ++  M+   G +P    Y 
Sbjct: 557 LNEALSILDQMTLSGVKCNIVAYTIIISEMIKEGKHDHAKSMFNEMISS-GHKPSATTYT 615

Query: 318 MMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILF 355
           + IS YC   +   A  L+ EM  +G  PD+ TYN+  
Sbjct: 616 VFISSYCKIGQIEEAEHLIGEMERDGVAPDVVTYNVFI 653


>gi|5454208|gb|AAD43623.1|AC005698_22 T3P18.22 [Arabidopsis thaliana]
          Length = 425

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 78/312 (25%), Positives = 141/312 (45%), Gaps = 5/312 (1%)

Query: 158 FDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEK 216
            D M   GC+ D+     +++ +C+ G T  A+  L ++  G+++P    Y  +++G  K
Sbjct: 4   IDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCK 63

Query: 217 ERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPG 276
            + + +A   F EM  + G  P NV  Y S LI+ L       +    L  M+ER  NP 
Sbjct: 64  YKHMDDALNLFKEMETK-GIRP-NVVTYSS-LISCLCNYGRWSDASRLLSDMIERKINPD 120

Query: 277 MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLL 336
           +  F    +  +    L  AE ++  MV R    P    Y+ +I+ +C  +    A ++ 
Sbjct: 121 VFTFSALIDAFVKEGKLVEAEKLYDEMVKR-SIDPSIVTYSSLINGFCMHDRLDEAKQMF 179

Query: 337 DEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDS 396
           + MV    FPD+ TYN L +   K +++ E   +F EM +   V N       ++    +
Sbjct: 180 EFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQA 239

Query: 397 DDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFAL 456
            D  +A + +K M+ +       T N L+ GLC    L +A+   + +    ++ T +  
Sbjct: 240 GDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTY 299

Query: 457 SKLKQILIKARK 468
           + + + + KA K
Sbjct: 300 NIMIEGMCKAGK 311



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 71/297 (23%), Positives = 138/297 (46%), Gaps = 14/297 (4%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVM 161
            + +VV+ L K    D  ++ +  M++  +   +  + ++         + DA+  F  M
Sbjct: 18  TYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEM 77

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYAILLEGWEKERDV 220
           E  G + +V   +SL+S +C  G+  DA + L  +++ +I PD  T++ L++ + KE  +
Sbjct: 78  ETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKL 137

Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFF 280
             A+K + EMV +   DP ++  Y S LI      D + E     + M+ + C P +  +
Sbjct: 138 VEAEKLYDEMV-KRSIDP-SIVTYSS-LINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTY 194

Query: 281 KLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMV 340
               +     + +     ++  M  R G   +T  YN++I     + +   A ++  EMV
Sbjct: 195 NTLIKGFCKYKRVEEGMEVFREMSQR-GLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMV 253

Query: 341 YNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNE--------NVLNHENCRAA 389
            +G  P+I TYN L + L K  KL +A  +F  + +++        N++    C+A 
Sbjct: 254 SDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAG 310



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/244 (25%), Positives = 108/244 (44%), Gaps = 9/244 (3%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           S+ T++S+ + + + DR+ +A   F+ M    C  DV   N+L+   C+  +  +  +  
Sbjct: 155 SIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVF 214

Query: 194 RVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
           R +  R +  +  TY IL++G  +  D   A++ F EMV +    P N+  Y++ L  L 
Sbjct: 215 REMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSD--GVPPNIMTYNTLLDGLC 272

Query: 253 KGCDGIYETVNSLKRMMERG-CNPGMTFFKLAFEE-CLTGQNLRGAEFIWGAMVGRIGFR 310
           K  +G  E    +   ++R    P +  + +  E  C  G+   G +      +   G +
Sbjct: 273 K--NGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLK--GVK 328

Query: 311 PDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGL 370
           PD   YN MIS +C       A  L  EM  +G  P+   YN L    ++      ++ L
Sbjct: 329 PDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAEL 388

Query: 371 FNEM 374
             EM
Sbjct: 389 IKEM 392



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 99/216 (45%), Gaps = 1/216 (0%)

Query: 263 NSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISL 322
           N L +M +    PG+  +    +     +++  A  ++  M  + G RP+   Y+ +IS 
Sbjct: 37  NLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETK-GIRPNVVTYSSLISC 95

Query: 323 YCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLN 382
            C       A +LL +M+     PD+ T++ L +  VK  KL EA  L++EMVK     +
Sbjct: 96  LCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPS 155

Query: 383 HENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAK 442
                + +  +   D    A + +++M+  HC     T N L+ G C    + E ++  +
Sbjct: 156 IVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFR 215

Query: 443 GMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKK 478
            M+++G+       + L Q L +A    + +E+ K+
Sbjct: 216 EMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKE 251



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 68/273 (24%), Positives = 122/273 (44%), Gaps = 12/273 (4%)

Query: 104 WNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVME 162
           +N ++D L K    D   +  K M+ + +  ++ T++S+ S      R  DA      M 
Sbjct: 54  YNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMI 113

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERDVA 221
           +     DVF  ++L+ A  ++GK ++A +    +V   I P   TY+ L+ G+     + 
Sbjct: 114 ERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLD 173

Query: 222 NAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG-C--DGIYETVNSLKRMMERGCNPGMT 278
            AK+ F E ++     PD V  Y+    TL+KG C    + E +   + M +RG      
Sbjct: 174 EAKQMF-EFMVSKHCFPD-VVTYN----TLIKGFCKYKRVEEGMEVFREMSQRGLVGNTV 227

Query: 279 FFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDE 338
            + +  +      +   A+ I+  MV   G  P+   YN ++   C + +   AM + + 
Sbjct: 228 TYNILIQGLFQAGDCDMAQEIFKEMVSD-GVPPNIMTYNTLLDGLCKNGKLEKAMVVFEY 286

Query: 339 MVYNGAFPDIQTYNILFEFLVKGRKLWEASGLF 371
           +  +   P I TYNI+ E + K  K+ +   LF
Sbjct: 287 LQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLF 319



 Score = 41.6 bits (96), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 65/153 (42%), Gaps = 10/153 (6%)

Query: 333 MKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNE---NVLNHENCRAA 389
           M L+D MV  G  PD+ TY ++   L K      A  L N+M + +    VL +      
Sbjct: 1   MALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDG 60

Query: 390 VRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
           +  Y   DD   A+  +K M          T + L++ LC+     +A +    M E+ I
Sbjct: 61  LCKYKHMDD---ALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKI 117

Query: 450 QVTPFALSKLKQILIKARK----EAVYEELLKK 478
               F  S L    +K  K    E +Y+E++K+
Sbjct: 118 NPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKR 150


>gi|358347566|ref|XP_003637827.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503762|gb|AES84965.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 639

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/280 (23%), Positives = 126/280 (45%), Gaps = 6/280 (2%)

Query: 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDV 160
           Y +N+++D L K          +  M K+ V  ++ T+ S+   Y +   V  A   F+ 
Sbjct: 265 YTFNILIDGLCKEGEVKKATSVLSVMIKQGVEPNVVTYTSLMDGYFLVKEVNKAKHVFNT 324

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERD 219
           +   G   +V + + +++ +C++    +A +  + +  + + P+  TY+ L++G  K   
Sbjct: 325 ISLRGVTPNVHSYSVMINGLCKNKMVDEAVKLFKEMHLKNMTPNTVTYSSLIDGLCKSGR 384

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTF 279
           +++      E  I     P N+  Y+S L  L K    + + +  L +M + G  P M+ 
Sbjct: 385 ISDVWDLIDE--INNRGQPANIITYNSLLNGLCKN-HQVDKAIALLTKMKDEGIQPDMST 441

Query: 280 FKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEM 339
           +    +       L+ A+ I+  ++ + G+  +  MY +MI+  C       A+ LL +M
Sbjct: 442 YTTLVDGLCKNGRLKDAQRIYQDLLCK-GYPLNIRMYTVMINGLCKEGFFDEALSLLSQM 500

Query: 340 VYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNEN 379
             NG  PD  TY  L   L K  K  +A  L  EM+  E+
Sbjct: 501 EDNGCMPDAVTYETLISALFKNNKNGKAVKLLREMIARES 540



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 64/277 (23%), Positives = 128/277 (46%), Gaps = 12/277 (4%)

Query: 104 WNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVME 162
           +  ++D   K+ L    +D    M  + +  ++ TF S+   + +  ++K+A+   + M 
Sbjct: 197 YTAIIDSFCKDKLVIDAYDLYSEMIVKKIYPNVVTFNSLIYGFCIVGQLKEAVGLLNEMS 256

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQFLRV-VDGRIKPDNDTYAILLEGWEKERDVA 221
                 +V+  N L+  +C++G+   A   L V +   ++P+  TY  L++G+   ++V 
Sbjct: 257 LNNVNPNVYTFNILIDGLCKEGEVKKATSVLSVMIKQGVEPNVVTYTSLMDGYFLVKEVN 316

Query: 222 NAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPG-MTFF 280
            AK  F  + +  G  P NV +Y S +I  L     + E V   K M  +   P  +T+ 
Sbjct: 317 KAKHVFNTISLR-GVTP-NVHSY-SVMINGLCKNKMVDEAVKLFKEMHLKNMTPNTVTYS 373

Query: 281 KLAFEECLTGQNLRGAEFIWGAM--VGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDE 338
            L    C +G+       +W  +  +   G   +   YN +++  C +++   A+ LL +
Sbjct: 374 SLIDGLCKSGR----ISDVWDLIDEINNRGQPANIITYNSLLNGLCKNHQVDKAIALLTK 429

Query: 339 MVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
           M   G  PD+ TY  L + L K  +L +A  ++ +++
Sbjct: 430 MKDEGIQPDMSTYTTLVDGLCKNGRLKDAQRIYQDLL 466



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 84/362 (23%), Positives = 150/362 (41%), Gaps = 50/362 (13%)

Query: 149 DRVKDAITTFD-VMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDT 206
           D + DA+++F+ ++        +F  N +LS++ +      A  F + ++ + I+P+  T
Sbjct: 31  DNLDDAVSSFNHILHMNNHTPPIFEFNKILSSLVKMNHFKIAISFSQQMELKGIQPEMFT 90

Query: 207 YAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC---DGIYETVN 263
           + IL+  +     +  A     + ++++G+ PD V        TLL+G      + E +N
Sbjct: 91  FNILINCFSHLCQLNFAFSMVAK-ILKLGYQPDTVTVN-----TLLRGLCLNGKVKEALN 144

Query: 264 SLKRMMERGCN-PGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISL 322
               ++ +  +   +++  L    C +G+  R A  +   + G +  RPD  MY  +I  
Sbjct: 145 FHDHVIRKRFHLDQVSYGTLINGLCKSGET-RAALQLLRKIEGLLLVRPDVIMYTAIIDS 203

Query: 323 YCYSNETGAAMKLLDEMVYNGAFPDIQTYN-ILFEFLVKGRKLWEASGLFNEMVKNE--- 378
           +C       A  L  EM+    +P++ T+N +++ F + G+ L EA GL NEM  N    
Sbjct: 204 FCKDKLVIDAYDLYSEMIVKKIYPNVVTFNSLIYGFCIVGQ-LKEAVGLLNEMSLNNVNP 262

Query: 379 -----NVLNHENCRAA--------------------VRVYMDSDDPYVAIKFWKYM--IE 411
                N+L    C+                      V  Y    D Y  +K       + 
Sbjct: 263 NVYTFNILIDGLCKEGEVKKATSVLSVMIKQGVEPNVVTYTSLMDGYFLVKEVNKAKHVF 322

Query: 412 NHCSDLSETGN-----LLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKA 466
           N  S    T N     +++ GLC   M+ EAVK  K M  K +       S L   L K+
Sbjct: 323 NTISLRGVTPNVHSYSVMINGLCKNKMVDEAVKLFKEMHLKNMTPNTVTYSSLIDGLCKS 382

Query: 467 RK 468
            +
Sbjct: 383 GR 384


>gi|414877568|tpg|DAA54699.1| TPA: hypothetical protein ZEAMMB73_211194, partial [Zea mays]
          Length = 709

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 89/400 (22%), Positives = 172/400 (43%), Gaps = 9/400 (2%)

Query: 86  KFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLA-TFASVFSS 144
           +FFRW+  Q   +H+P  ++ ++ LL +  L D     ++ M +  +      FA +  S
Sbjct: 113 EFFRWADRQWKYRHAPEVFDEMLALLSRTRLHDPARRVVRLMIRRGIRRGTRQFAHLMLS 172

Query: 145 YVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPD 203
           Y  A +++ A+    +M++ GC  D+   N  ++ +   G+   A +F  R+    + PD
Sbjct: 173 YSRAGKLRSAMRVLQLMQKDGCAPDICICNVAVNVLVVAGRVDKALEFAERMRRVGVDPD 232

Query: 204 NDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVN 263
             TY  L++G    R +  A +  G M ++ G  PD +  +   +++ L     + E  N
Sbjct: 233 VVTYNCLIKGLCGARRIVEALEMIGSM-LQNGCPPDKISYFT--VMSFLCKEKRVAEVWN 289

Query: 264 SLKRMM-ERGCNP-GMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMIS 321
            L+RM  + G  P  +T+  L       G       F+  +   R  FR D   Y+ ++ 
Sbjct: 290 LLERMRNDAGIFPDQITYNMLIHGLAKHGHADEALTFLRESEGKR--FRVDQVGYSAIVH 347

Query: 322 LYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVL 381
            +C +     A +++ EM+  G  PD+ TY+ + +   +  +L +A  +   M KN    
Sbjct: 348 SFCLNGRMSEAKEIIGEMISKGCRPDVVTYSAVVDGFCRIGELDQARKMMKHMYKNGCKP 407

Query: 382 NHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYA 441
           N     A +           A +      E   +    T ++++ G      L E+    
Sbjct: 408 NTVTHTALLNGLCKVGKSSEAWELLNKSEEEWWTPSGITYSVIMHGFRREGKLVESCDVV 467

Query: 442 KGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKCKA 481
             M +KG   T   ++ L   L K +K A  ++ +++C++
Sbjct: 468 MQMLQKGFFPTAVEINLLIHALCKEQKPARAKDFMEQCQS 507



 Score = 44.7 bits (104), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 60/307 (19%), Positives = 122/307 (39%), Gaps = 19/307 (6%)

Query: 138 FASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VV 196
           ++++  S+ +  R+ +A      M   GC+ DV   ++++   CR G+   A + ++ + 
Sbjct: 342 YSAIVHSFCLNGRMSEAKEIIGEMISKGCRPDVVTYSAVVDGFCRIGELDQARKMMKHMY 401

Query: 197 DGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD 256
               KP+  T+  LL G  K    + A +   +   E  W P  +    S ++   +   
Sbjct: 402 KNGCKPNTVTHTALLNGLCKVGKSSEAWELLNKSE-EEWWTPSGITY--SVIMHGFRREG 458

Query: 257 GIYETVNSLKRMMERGCNPGMTFFKLAFEE-CLTGQNLRGAEFIW-----GAMVGRIGFR 310
            + E+ + + +M+++G  P      L     C   +  R  +F+      G  +  + F 
Sbjct: 459 KLVESCDVVMQMLQKGFFPTAVEINLLIHALCKEQKPARAKDFMEQCQSKGCFINVVNFT 518

Query: 311 PDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGL 370
              H ++          +  +A+ LLD+M      PD+ TY ++ + L +  K+ EA+ L
Sbjct: 519 TVIHGFS-------RQGDLESALSLLDDMYLTNRHPDVVTYTVVVDALGRKGKMKEATAL 571

Query: 371 FNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCD 430
             +M+    +      R  +  Y +       +     M+       S   N ++  LC 
Sbjct: 572 VEKMLNRGLLPTPVTYRTVIHRYCEKGAVEDLLNLLDKMLTKQ--GFSSAYNQVIEKLCA 629

Query: 431 MHMLPEA 437
              L EA
Sbjct: 630 FGKLSEA 636


>gi|224058846|ref|XP_002299640.1| predicted protein [Populus trichocarpa]
 gi|222846898|gb|EEE84445.1| predicted protein [Populus trichocarpa]
          Length = 609

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 103/456 (22%), Positives = 182/456 (39%), Gaps = 55/456 (12%)

Query: 37  PTIKTLCEIIANTP-----SPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWS 91
           P+++TL E            P  E  L+   ++V    V +VLK         ++FF+W+
Sbjct: 27  PSVRTLDERFIRILKIFKWGPDAEKALEVLKLKVDHRLVREVLKIDV-EINVKIQFFKWA 85

Query: 92  AYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKEN--VLSLATFASVFSSYVVAD 149
             + N +H    +  ++  L    LF  MW  I+ M +    V+  A  + V      A 
Sbjct: 86  GKRRNFEHDLTTYMPLIRCLDDCGLFGEMWKMIQEMVRSPTCVIGPADLSEVVKILGKAK 145

Query: 150 RVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDG--KTIDAWQFLRVVDGRIKPDNDTY 207
            V  A++ F  ++   CK      NS++  + ++G  + I         +G   PD  TY
Sbjct: 146 MVNKALSVFYQIKSRKCKPTASTYNSMILMLMQEGHHEKIHELYHEMCNEGDCFPDTMTY 205

Query: 208 AILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKR 267
           ++L+  + K      A + F EM    G  P     Y + L    K  D   + +  ++ 
Sbjct: 206 SVLVSAFVKLGRDDYAIRLFDEMKAN-GLHP-TAKIYTTLLAIYFKSGD--EKALGLVQE 261

Query: 268 MMERGCNPGMTFFKLAFEECLTGQNLRG-AEFIWGAMVGRI--GFRPDTHMYNMMISLYC 324
           M ++GC P  T F   + E + G    G  E  +   +  +  G +PD  + N +I+++ 
Sbjct: 262 MKDKGCAP--TVF--TYTELIKGLGKSGRVEDAYSVFLNMLKDGCKPDVVLINNLINIFG 317

Query: 325 YSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHE 384
            +     A+KL D+M      P++ TYN +       + L+E+    +E           
Sbjct: 318 KAGRLEDALKLFDQMRSLKCAPNVVTYNTVI------KALFESKAPASE----------- 360

Query: 385 NCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGM 444
                            A  +++ M  N  +  S T ++L+ G C  + + +A+   + M
Sbjct: 361 -----------------AASWFEKMKANGVTPSSFTYSILIDGFCKTNRVEKALLLLEEM 403

Query: 445 AEKGIQVTPFALSKLKQILIKARKEAVYEELLKKCK 480
            EKG    P A   L   L KA++     EL  + K
Sbjct: 404 DEKGFPPCPAAYCSLINALGKAKRYEAANELFLELK 439



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 70/282 (24%), Positives = 124/282 (43%), Gaps = 19/282 (6%)

Query: 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKE----NVLSLATFASVFSSYVVADRVKDAITT 157
           + +  ++  LGK+   +  +    +M K+    +V+ +    ++F     A R++DA+  
Sbjct: 272 FTYTELIKGLGKSGRVEDAYSVFLNMLKDGCKPDVVLINNLINIFGK---AGRLEDALKL 328

Query: 158 FDVMEQYGCKHDVFALNSLLSAICRD---GKTIDAWQFLRVVDGRIKPDNDTYAILLEGW 214
           FD M    C  +V   N+++ A+           +W F ++    + P + TY+IL++G+
Sbjct: 329 FDQMRSLKCAPNVVTYNTVIKALFESKAPASEAASW-FEKMKANGVTPSSFTYSILIDGF 387

Query: 215 EKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCN 274
            K   V  A     EM  E G+ P   PA    LI  L G    YE  N L   ++  C 
Sbjct: 388 CKTNRVEKALLLLEEM-DEKGFPP--CPAAYCSLINAL-GKAKRYEAANELFLELKENCG 443

Query: 275 PGMTFFKLAFEECLTGQNLRGAEFI--WGAMVGRIGFRPDTHMYNMMISLYCYSNETGAA 332
                      + L G+  R +E +  +  M  +IG  PD + YN ++S    +     A
Sbjct: 444 RSSARIYAVMIKNL-GKCGRPSEAVDLFNEM-KKIGCNPDVYAYNALMSGLVRAGMIEEA 501

Query: 333 MKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
              L  M  NG  PD+ ++NI+   L +  +  +A+ +F +M
Sbjct: 502 FSALRTMEENGCTPDLNSHNIILNGLARTGRPEQATEMFMKM 543



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 86/171 (50%), Gaps = 6/171 (3%)

Query: 101 PYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLA-TFASVFSSYVVADRVKDAITTFD 159
           P A+  +++ LGK   ++A  +    +K+    S A  +A +  +     R  +A+  F+
Sbjct: 412 PAAYCSLINALGKAKRYEAANELFLELKENCGRSSARIYAVMIKNLGKCGRPSEAVDLFN 471

Query: 160 VMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV-DGRIKPDNDTYAILLEGWEKER 218
            M++ GC  DV+A N+L+S + R G   +A+  LR + +    PD +++ I+L G  +  
Sbjct: 472 EMKKIGCNPDVYAYNALMSGLVRAGMIEEAFSALRTMEENGCTPDLNSHNIILNGLARTG 531

Query: 219 DVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMM 269
               A + F +M   +   PD V +Y++ L +L +   G++E    L R M
Sbjct: 532 RPEQATEMFMKMKDSL-IKPDAV-SYNTILGSLSRS--GMFEEAAKLMREM 578


>gi|297853270|ref|XP_002894516.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297340358|gb|EFH70775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 477

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 88/366 (24%), Positives = 151/366 (41%), Gaps = 23/366 (6%)

Query: 21  RKRSTFASHLDVPNLPPTIKTLCEIIANTPSPTVEDVLDKTLIRVSQETVEQVL-----K 75
           R+R   ++ L    +  T++  C      P    +  LD   + +S   V +VL      
Sbjct: 69  RRRFMESAKLGASRVLDTLQQDC------PGFNTKSALDDLNVTISGLLVREVLVGILRT 122

Query: 76  FSYSHPGP----AVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKEN 131
            SY +       A KFF W   Q N +H+   ++L++ +  +   + AM   I  M K+ 
Sbjct: 123 LSYDNKTRCAKLAYKFFVWFGGQENFRHTANCYHLLMKIFAECGEYKAMCRLIDEMIKDG 182

Query: 132 VLSLA-TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAI--CRDGKTID 188
             + A TF  +  +   A   +D +  F   + +  +    + N++L ++   +  K ID
Sbjct: 183 YPTTACTFNLLICTCGEAGLARDVVEQFIKSKTFNYRPYKHSYNAILHSLLGVKQYKLID 242

Query: 189 AWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYL 248
            W + ++++    PD  TY I++    +        +   EMV + G+ PD +  Y+  L
Sbjct: 243 -WVYEQMLEDGFSPDVLTYNIVMFANFRLGKTDRLYRLLDEMVKD-GFSPD-LYTYNILL 299

Query: 249 ITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIG 308
             L  G +     +N L  M E G  PG+  F    +       L   ++    MV ++G
Sbjct: 300 HHLATG-NKPLAALNLLTHMREVGVEPGVIHFTTLVDGLSRAGKLEACKYFMDEMV-KVG 357

Query: 309 FRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEAS 368
             PD   Y +MI+ Y    E   A ++  EM   G  P++ TYN +        K  EA 
Sbjct: 358 CTPDVVCYTVMITGYISGGELEKAEEMFKEMTEKGQLPNVFTYNSMIRGFCMAGKFKEAC 417

Query: 369 GLFNEM 374
            L  EM
Sbjct: 418 SLLKEM 423


>gi|449438627|ref|XP_004137089.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Cucumis sativus]
          Length = 831

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 94/373 (25%), Positives = 158/373 (42%), Gaps = 48/373 (12%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKEN-VLSLATFASVFSSYVVADRVKDAITTFDVM 161
            WN ++ + G+N +   +    K MK+   V    TF ++ S+Y        A+  +  M
Sbjct: 468 TWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGFFDQAMAIYRRM 527

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLE----GWEK 216
              G   D+   N++L+A+ R G    + + L  + DGR KP+  TY  LL     G E 
Sbjct: 528 LDAGVTPDLSTYNAVLAALARGGLWEQSEKVLAEMKDGRCKPNELTYCSLLHAYANGKEV 587

Query: 217 ERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPG 276
           ER  A A++ +  ++     +P  V      L+ +    D + ET  +   + E+G +P 
Sbjct: 588 ERMSALAEEIYSGII-----EPQAVLL--KTLVLVYSKSDLLTETERAFLELREQGFSPD 640

Query: 277 MTFFKLAFEECLTGQNLRGAEFIWGA--MVGRI----------GFRPDTHMYNMMISLYC 324
           +T              L     I+G   MV +           GF P    YN ++ +Y 
Sbjct: 641 IT-------------TLNAMVSIYGRRRMVSKTNEILNFIKDSGFTPSLTTYNSLMYMYS 687

Query: 325 YSNETGAAMKLLDEMVYNGAFPDIQTYN-ILFEFLVKGRKLWEASGLFNEMVK---NENV 380
            +     +  +L E++  G  PDI ++N ++F +   GR + EAS +F EM       +V
Sbjct: 688 RTEHFEKSEDILREIIAKGMKPDIISFNTVIFAYCRNGR-MKEASRIFAEMKDFGLAPDV 746

Query: 381 LNHENCRAAVRVYMDSDDPYV-AIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVK 439
           + +    A+      SD  ++ AI   KYMI+N C     T N L+   C ++   EA  
Sbjct: 747 ITYNTFIASYA----SDSMFIEAIDVVKYMIKNGCKPNQNTYNSLIDWFCKLNRRDEASS 802

Query: 440 YAKGMAEKGIQVT 452
           +   +      VT
Sbjct: 803 FISNLRNLDPSVT 815



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 74/271 (27%), Positives = 119/271 (43%), Gaps = 11/271 (4%)

Query: 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDV 160
           Y +N ++    +  L++   +  + MK         T+ ++   Y  + R ++A+     
Sbjct: 292 YTYNTLISSCRRGSLYEEAAEVFEEMKAAGFSPDKVTYNALLDVYGKSRRPREAMEVLKE 351

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQF-LRVVDGRIKPDNDTYAILLEGWEKERD 219
           ME  G    +   NSL+SA  RDG   +A +   ++V   IKPD  TY  LL G+EK   
Sbjct: 352 MEASGFAPSIVTYNSLISAYARDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSGFEKTGK 411

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTF 279
              A K F EM +  G  P N+  +++ LI +        E +   + +    C P +  
Sbjct: 412 DDYAMKVFEEMRV-AGCQP-NICTFNA-LIKMHGNRGNFVEMMKVFEEIKICECVPDIVT 468

Query: 280 FKLAFEECLTGQNLRGAEFIWGAM--VGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLD 337
           +       + GQN   +E + G    + R GF P+   +N +IS Y        AM +  
Sbjct: 469 WNTLL--AVFGQNGMDSE-VSGVFKEMKRAGFVPERDTFNTLISAYSRCGFFDQAMAIYR 525

Query: 338 EMVYNGAFPDIQTYNILFEFLVKGRKLWEAS 368
            M+  G  PD+ TYN +   L +G  LWE S
Sbjct: 526 RMLDAGVTPDLSTYNAVLAALARG-GLWEQS 555



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 66/277 (23%), Positives = 117/277 (42%), Gaps = 20/277 (7%)

Query: 106 LVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASVFSSYVVADRVKDAITTFDVMEQY 164
           +++ +LGK          +  ++ + V + +  + S+ ++Y    R ++A+  F  +E+ 
Sbjct: 190 VIISVLGKEGRASFAASLLHDLRNDGVHIDIYAYTSLITAYASNGRYREAVMVFKKLEEE 249

Query: 165 GCKHDVFALNSLLSAICRDGKTIDAW-QFLRVVDGR----IKPDNDTYAILLEGWEKERD 219
           GC+  +   N +L+     GK    W +   +VD      + PD  TY  L+    +   
Sbjct: 250 GCRPTLITYNVILNVY---GKMGMPWSKIAGLVDSMKSSGVAPDLYTYNTLISSCRRGSL 306

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTF 279
              A + F EM    G+ PD V  Y++ L+ +        E +  LK M   G  P +  
Sbjct: 307 YEEAAEVFEEMK-AAGFSPDKV-TYNA-LLDVYGKSRRPREAMEVLKEMEASGFAPSIVT 363

Query: 280 FKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEM 339
           +            L  A  +   MV + G +PD   Y  ++S +  + +   AMK+ +EM
Sbjct: 364 YNSLISAYARDGLLDEAMELKSQMVKK-GIKPDVFTYTTLLSGFEKTGKDDYAMKVFEEM 422

Query: 340 VYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK 376
              G  P+I T+N L        K+    G F EM+K
Sbjct: 423 RVAGCQPNICTFNALI-------KMHGNRGNFVEMMK 452



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 62/249 (24%), Positives = 97/249 (38%), Gaps = 48/249 (19%)

Query: 138 FASVFSSYVVA---------DRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTID 188
           FAS+ S+ VVA          R   A +    +   G   D++A  SL++A   +G+  +
Sbjct: 179 FASILSNSVVAVIISVLGKEGRASFAASLLHDLRNDGVHIDIYAYTSLITAYASNGRYRE 238

Query: 189 AWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSY 247
           A   F ++ +   +P   TY ++L               +G+M +   W           
Sbjct: 239 AVMVFKKLEEEGCRPTLITYNVIL-------------NVYGKMGMP--WSK--------- 274

Query: 248 LITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRI 307
                     I   V+S+K     G  P +  +      C  G     A  ++  M    
Sbjct: 275 ----------IAGLVDSMK---SSGVAPDLYTYNTLISSCRRGSLYEEAAEVFEEMKA-A 320

Query: 308 GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEA 367
           GF PD   YN ++ +Y  S     AM++L EM  +G  P I TYN L     +   L EA
Sbjct: 321 GFSPDKVTYNALLDVYGKSRRPREAMEVLKEMEASGFAPSIVTYNSLISAYARDGLLDEA 380

Query: 368 SGLFNEMVK 376
             L ++MVK
Sbjct: 381 MELKSQMVK 389


>gi|38605763|emb|CAE05864.3| OSJNBa0044K18.6 [Oryza sativa Japonica Group]
          Length = 902

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 85/339 (25%), Positives = 143/339 (42%), Gaps = 34/339 (10%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGC----------------KHDVFALNSLL 177
           + A FA +F       R+    TTF++M ++ C                + +    N+++
Sbjct: 472 AFALFADMFRL-----RLPLCTTTFNIMLRHLCSAGKPARALELLRQMPRPNAVTYNTVI 526

Query: 178 SAICRDGKTIDAWQFLRVVD--GRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVG 235
           +  C  G+   A   +R +   G I P+  TY  ++ GW K   V  A K F EM+ +  
Sbjct: 527 AGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGE 586

Query: 236 WDPDNVPAYDSYLITLLKG-CD-GIYETVNSLK-RMMERGCNPGMTFFKLAFEEC-LTGQ 291
             P+ V  Y++    L+ G CD G  +T    + RM+ERG    +  + L      + G+
Sbjct: 587 VKPEAV-MYNA----LIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGR 641

Query: 292 NLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTY 351
                E +    +G  G  PD   YN++I+ +C       A+++ + M   G    + TY
Sbjct: 642 GTEAYELV--EEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTY 699

Query: 352 NILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIE 411
             L   L K  ++ E   LF+E V+     +     A +  +  S +   A +    M +
Sbjct: 700 TALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEK 759

Query: 412 NHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQ 450
              +    T N L+ GLC +  + EA K    M E+GIQ
Sbjct: 760 KRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQ 798



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 88/370 (23%), Positives = 135/370 (36%), Gaps = 51/370 (13%)

Query: 116 LFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNS 175
           +FD M      +K E V+    + ++   Y    ++  A+   D M + G    V   N 
Sbjct: 577 VFDEMLTK-GEVKPEAVM----YNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNL 631

Query: 176 LLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEV 234
           L+ A+  DG+  +A++ +  + G+ + PD  TY IL+ G  KE +V  A + F  M    
Sbjct: 632 LVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRR- 690

Query: 235 GWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLR 294
                 V  Y + +  L K    + ET       + RG  P +  +        T  N+ 
Sbjct: 691 -GVRATVVTYTALIYALSKKGQ-VQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNID 748

Query: 295 GAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNIL 354
            A  I G M  +    PD   YN ++   C       A KL+DEM   G  PD+ TYN L
Sbjct: 749 RAFEIMGEMEKK-RIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTL 807

Query: 355 FEFLVKGRKLWEASGLFNEMVK---NENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIE 411
                    + +A  + NEM+    N  +L +                            
Sbjct: 808 ISGYSMKGDVKDALRIRNEMMNKGFNPTLLTY---------------------------- 839

Query: 412 NHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAV 471
                     N L+ GLC      +A    K M E GI         L + L    + A+
Sbjct: 840 ----------NALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEGLTTEDERAI 889

Query: 472 YEELLKKCKA 481
            +E L    A
Sbjct: 890 DDERLAAADA 899



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 65/264 (24%), Positives = 117/264 (44%), Gaps = 18/264 (6%)

Query: 104 WNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVME 162
           +NL+V  L  +      ++ ++ M  + +   + T+  + + +     VK A+  F+ M 
Sbjct: 629 YNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMS 688

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDVA 221
           + G +  V    +L+ A+ + G+  +  + F   V   I+PD   Y  L+       ++ 
Sbjct: 689 RRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNID 748

Query: 222 NAKKTFGEMVIEVGWDPDNVPAYDSYL--ITLLKGCDGIYETVNSLKRMMERGCNPGMTF 279
            A +  GEM  +    PD+V  Y++ +  + LL   D   E    +  M ERG  P +  
Sbjct: 749 RAFEIMGEME-KKRIAPDDV-TYNTLMRGLCLLGRVD---EARKLIDEMTERGIQPDL-- 801

Query: 280 FKLAFEECLTGQNLRG----AEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKL 335
             + +   ++G +++G    A  I   M+ + GF P    YN +I   C + +   A  +
Sbjct: 802 --VTYNTLISGYSMKGDVKDALRIRNEMMNK-GFNPTLLTYNALIQGLCKNGQGDDAENM 858

Query: 336 LDEMVYNGAFPDIQTYNILFEFLV 359
           + EMV NG  PD  TY  L E L 
Sbjct: 859 VKEMVENGITPDDSTYISLIEGLT 882


>gi|147833070|emb|CAN77584.1| hypothetical protein VITISV_034996 [Vitis vinifera]
          Length = 913

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 82/389 (21%), Positives = 160/389 (41%), Gaps = 47/389 (12%)

Query: 90  WSAYQLNDKHSPYAWNLVVDLLGKNCLFD---AMWDAIKSMKKENVLSLATFASVFSSYV 146
           W   +     +  ++N+++  L +N   D   ++W+ +   +K+      T+  +     
Sbjct: 323 WKVMEKEGCRTVVSYNILIRGLFENAKVDEAISIWELLP--EKDCCADSMTYGVLVHGLC 380

Query: 147 VADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDND 205
               +  A++  +  E      D FA +S+++ +CR+G+  +    L ++     KP+  
Sbjct: 381 KNGYLNKALSILEEAENGRGDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPY 440

Query: 206 TYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSL 265
               ++ G+ +   + +A + FG MV + G  P  V  Y++ LI  L   +   E    +
Sbjct: 441 VCNAVINGFVRASKLEDALRFFGNMVSK-GCFP-TVVTYNT-LINGLSKAERFSEAYALV 497

Query: 266 KRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCY 325
           K M+++G  P M  + L       G+ L  A  +W   + + GF+PD  M+N++I   C 
Sbjct: 498 KEMLQKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQALEK-GFKPDVKMHNIIIHGLCS 556

Query: 326 SNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHEN 385
           S +   A++L  EM      P++ T+N L E   K R    AS                 
Sbjct: 557 SGKVEDALQLYSEMKQRNCVPNLVTHNTLMEGFYKVRDFERAS----------------- 599

Query: 386 CRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMA 445
                             K W ++++        + N+ + GLC  H + +AV +     
Sbjct: 600 ------------------KIWDHILQYGLQPDIISYNITLKGLCSCHRISDAVGFLNDAV 641

Query: 446 EKGIQVTPFALSKLKQ--ILIKARKEAVY 472
           ++G+  T    + L Q  + +K   E V+
Sbjct: 642 DRGVLPTAITWNILVQGYLALKGYMEPVF 670



 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 78/329 (23%), Positives = 131/329 (39%), Gaps = 53/329 (16%)

Query: 153 DAITTFDVM-EQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAIL 210
            A+  F  M E +GC+  + + NSLL+A+    K  +A  F    +   + P+  TY IL
Sbjct: 71  QALDIFQRMHEIFGCQPGIRSYNSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYNIL 130

Query: 211 LEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMME 270
           ++   +++    AK+    M  + G+ PD V +Y + + +L K    + + +     M E
Sbjct: 131 IKISCRKKQFDKAKELLNWMWGQ-GFSPD-VFSYGTLINSLAKN-GYMSDALKLFDEMPE 187

Query: 271 RGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMIS--------- 321
           RG  P +  + +  +      ++  A  IW  ++      P+   YN+MI+         
Sbjct: 188 RGVTPDVACYNILIDGFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFD 247

Query: 322 -----------------LY---------CYSNETGAAMKLLDEMVYNGAFPDIQTYNILF 355
                            LY         C S     A ++  EM  NG  PD+  YN + 
Sbjct: 248 ESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTML 307

Query: 356 EFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAV------RVYMDSDDPYVAIKFWKYM 409
              ++  ++ E   L+  M K       E CR  V      R   ++     AI  W+ +
Sbjct: 308 NGYLRAGRIEECLELWKVMEK-------EGCRTVVSYNILIRGLFENAKVDEAISIWELL 360

Query: 410 IENHCSDLSETGNLLVAGLCDMHMLPEAV 438
            E  C   S T  +LV GLC    L +A+
Sbjct: 361 PEKDCCADSMTYGVLVHGLCKNGYLNKAL 389



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 78/369 (21%), Positives = 142/369 (38%), Gaps = 42/369 (11%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDA---WQFL 193
           ++ ++ +S      + DA+  FD M + G   DV   N L+    + G  ++A   W+ L
Sbjct: 161 SYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGDILNASEIWERL 220

Query: 194 R--------------VVDGRIK--------------------PDNDTYAILLEGWEKERD 219
                          +++G  K                     D  TY+ L+ G     +
Sbjct: 221 LKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGN 280

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTF 279
           +  A + + EM  E G  PD V  Y++ L   L+    I E +   K M + GC   ++ 
Sbjct: 281 LDGATRVYKEMA-ENGVSPD-VVVYNTMLNGYLRA-GRIEECLELWKVMEKEGCRTVVS- 336

Query: 280 FKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEM 339
           + +          +  A  IW  ++       D+  Y +++   C +     A+ +L+E 
Sbjct: 337 YNILIRGLFENAKVDEAISIW-ELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEA 395

Query: 340 VYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDP 399
                  D   Y+ +   L +  +L E +G+ ++M K+    N   C A +  ++ +   
Sbjct: 396 ENGRGDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPYVCNAVINGFVRASKL 455

Query: 400 YVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKL 459
             A++F+  M+   C     T N L+ GL       EA    K M +KG +      S L
Sbjct: 456 EDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLQKGWKPNMITYSLL 515

Query: 460 KQILIKARK 468
              L + +K
Sbjct: 516 MNGLCQGKK 524



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 65/153 (42%), Gaps = 6/153 (3%)

Query: 298 FIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEF 357
           ++WG      GF PD   Y  +I+    +     A+KL DEM   G  PD+  YNIL + 
Sbjct: 149 WMWGQ-----GFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDG 203

Query: 358 LVKGRKLWEASGLFNEMVKNENVL-NHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSD 416
             K   +  AS ++  ++K  +V  N  +    +           + + W  M +N    
Sbjct: 204 FFKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQ 263

Query: 417 LSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
              T + L+ GLC    L  A +  K MAE G+
Sbjct: 264 DLYTYSTLIHGLCGSGNLDGATRVYKEMAENGV 296


>gi|356522850|ref|XP_003530056.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Glycine max]
          Length = 545

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 84/354 (23%), Positives = 154/354 (43%), Gaps = 28/354 (7%)

Query: 136 ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRV 195
            T  ++     +  +VK A+   D +   G + D  +  +L++ +C+ G+T  A Q LR 
Sbjct: 134 VTLTTLIKGLCLKGQVKKALHFHDKLLAQGFRLDQVSYGTLINGVCKIGETRAAIQLLRR 193

Query: 196 VDGRI-KPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG 254
           +DGR+ +P+   Y  +++   K + V+ A   F EM   V     NV  Y S +I     
Sbjct: 194 IDGRLTEPNVVMYNTIIDCLCKRKLVSEACNLFSEM--SVKGISANVVTY-SAIIHGFCI 250

Query: 255 CDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTH 314
              + E +  L  M+ +  NP +  +    +       ++ A+ +   +V +   +P+  
Sbjct: 251 VGKLTEALGFLNEMVLKAINPDVYIYNTLVDALHKEGKVKEAKNVLAVIV-KTCLKPNVI 309

Query: 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
            YN +I         G A  + + +   G  PD+ +YNI+   L K +++ EA  L+ EM
Sbjct: 310 TYNTLID--------GYAKHVFNAVGLMGVTPDVWSYNIMINRLCKIKRVEEALNLYKEM 361

Query: 375 VKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNL-----LVAGLC 429
            +   V N     + +     S     A   W  + E H  D     N+     L+ GLC
Sbjct: 362 HQKNMVPNTVTYNSLIDGLCKSGRISYA---WDLIDEMH--DRGHHANVITYNSLINGLC 416

Query: 430 DMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQ-ILIKARK----EAVYEELLKK 478
               L +A+     M ++GIQ   + L+ L   +L K ++    + ++++LL K
Sbjct: 417 KNGQLDKAIALINKMKDQGIQPDMYTLNILLHGLLCKGKRLKNAQGLFQDLLDK 470



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 85/360 (23%), Positives = 162/360 (45%), Gaps = 37/360 (10%)

Query: 104 WNLVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASVFSSYVVADRVKDAITTFDVME 162
           +N ++D L K  L     +    M  + +  ++ T++++   + +  ++ +A+   + M 
Sbjct: 206 YNTIIDCLCKRKLVSEACNLFSEMSVKGISANVVTYSAIIHGFCIVGKLTEALGFLNEMV 265

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQFLRV-VDGRIKPDNDTYAILLEGWEKERDVA 221
                 DV+  N+L+ A+ ++GK  +A   L V V   +KP+  TY  L++G+ K   V 
Sbjct: 266 LKAINPDVYIYNTLVDALHKEGKVKEAKNVLAVIVKTCLKPNVITYNTLIDGYAKH--VF 323

Query: 222 NAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPG-MTFF 280
           NA       V  +G  PD V +Y+  +I  L     + E +N  K M ++   P  +T+ 
Sbjct: 324 NA-------VGLMGVTPD-VWSYN-IMINRLCKIKRVEEALNLYKEMHQKNMVPNTVTYN 374

Query: 281 KLAFEECLTGQNLRGAEFIWGAM--VGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDE 338
            L    C +G+      + W  +  +   G   +   YN +I+  C + +   A+ L+++
Sbjct: 375 SLIDGLCKSGR----ISYAWDLIDEMHDRGHHANVITYNSLINGLCKNGQLDKAIALINK 430

Query: 339 MVYNGAFPDIQTYNILFE-FLVKGRKLWEASGLFNEM--------VKNENVLNHENCRAA 389
           M   G  PD+ T NIL    L KG++L  A GLF ++        V   N++ + +C+  
Sbjct: 431 MKDQGIQPDMYTLNILLHGLLCKGKRLKNAQGLFQDLLDKGYHPNVYTYNIIIYGHCKEG 490

Query: 390 VRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
           +      D+ Y        M ++ CS  + T  +++  L +     +A K    M  +G+
Sbjct: 491 LL-----DEAYA---LQSKMEDSGCSPNAITFKIIICALLEKGETDKAEKLLCEMIARGL 542



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 61/260 (23%), Positives = 100/260 (38%), Gaps = 42/260 (16%)

Query: 118 DAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLL 177
           DA++   + +   +   +  F  +  S+         ++    +E    + D F LN L+
Sbjct: 46  DALFQFHRMLCMRHTPPIIQFNKILDSFAKMKHYPTVVSLSRRLELKAIQPDFFTLNILI 105

Query: 178 SAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGW 236
           +  C  G+   A+  L +++    +PD  T   L++G   +  V  A   F + ++  G+
Sbjct: 106 NCFCHLGQINLAFSVLSKILKWGYQPDTVTLTTLIKGLCLKGQVKKALH-FHDKLLAQGF 164

Query: 237 DPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGA 296
             D V +Y     TL+ G   I ET                                R A
Sbjct: 165 RLDQV-SYG----TLINGVCKIGET--------------------------------RAA 187

Query: 297 EFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYN-ILF 355
             +   + GR+   P+  MYN +I   C       A  L  EM   G   ++ TY+ I+ 
Sbjct: 188 IQLLRRIDGRLT-EPNVVMYNTIIDCLCKRKLVSEACNLFSEMSVKGISANVVTYSAIIH 246

Query: 356 EFLVKGRKLWEASGLFNEMV 375
            F + G KL EA G  NEMV
Sbjct: 247 GFCIVG-KLTEALGFLNEMV 265


>gi|225456753|ref|XP_002268934.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580 [Vitis vinifera]
 gi|297733985|emb|CBI15232.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 80/287 (27%), Positives = 129/287 (44%), Gaps = 21/287 (7%)

Query: 100 SPYAW--NLVVDLLGK-NCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAIT 156
           SP  W  NLV++ L K  C+ DA    I ++ K ++  + TF ++   Y    ++ +AI 
Sbjct: 422 SPDIWTYNLVINGLCKIGCVSDADNLVIDAIAKGHLPDVFTFNTLIDGYCKKLKLDNAIE 481

Query: 157 TFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAW-QFLRVVDGRIKPDNDTYAILLEGWE 215
             D M  +G   DV   NS+L+ +C+ GK  D    F  +++    P+  TY IL E + 
Sbjct: 482 IVDRMWNHGVSPDVITYNSILNGLCKAGKYEDVMGTFKLMMEKGCVPNIITYNILTESFC 541

Query: 216 KERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG------CDGIYETVNSLKRMM 269
           K R V  A     EM  + G  PD V        TL+KG       DG Y+     KR+ 
Sbjct: 542 KARKVEEALNLIEEMQNK-GLTPDVVN-----FGTLMKGFCDNGDLDGAYQL---FKRVD 592

Query: 270 ER-GCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNE 328
           E+   +  +  + +         N+  AE ++  M    GF PD++ Y +MI  +C +  
Sbjct: 593 EQYKFSHTIATYNIMINAFAGKLNMNMAEKLFNKMCEN-GFSPDSYTYRVMIDGFCKTGN 651

Query: 329 TGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
             +    L   +  G  P + T+  +   L   R++ EA G+ + MV
Sbjct: 652 INSGYSFLLVKIEKGLIPSLTTFGRVLNCLCLKRRVHEAVGIIHLMV 698



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 77/296 (26%), Positives = 114/296 (38%), Gaps = 52/296 (17%)

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIK---PDNDTYAILLEGWEKE 217
           M   G + D F  NS++   C+ G   +A Q LR  DG  K   PD  TY  L+ G  ++
Sbjct: 311 MVNEGYEPDGFTYNSIIDGYCKLGMMQNADQILR--DGAFKGFVPDESTYCSLINGLCQD 368

Query: 218 RDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDG---IYETVNSLKRMMERGCN 274
            D+  A   F E  +E G  P+ V        TL+KG      I + +  +  M E GC+
Sbjct: 369 GDIDRAINVFNE-AMEKGLKPNLVLCN-----TLVKGLSQQGLILQALKLMNEMSENGCS 422

Query: 275 PGMTFFKLAFEE-CLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAM 333
           P +  + L     C  G        +  A+    G  PD   +N +I  YC   +   A+
Sbjct: 423 PDIWTYNLVINGLCKIGCVSDADNLVIDAIAK--GHLPDVFTFNTLIDGYCKKLKLDNAI 480

Query: 334 KLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVY 393
           +++D M  +G  PD+ TYN +   L K  K  +  G F                      
Sbjct: 481 EIVDRMWNHGVSPDVITYNSILNGLCKAGKYEDVMGTF---------------------- 518

Query: 394 MDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
                        K M+E  C     T N+L    C    + EA+   + M  KG+
Sbjct: 519 -------------KLMMEKGCVPNIITYNILTESFCKARKVEEALNLIEEMQNKGL 561



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 95/441 (21%), Positives = 176/441 (39%), Gaps = 79/441 (17%)

Query: 70  VEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKS--M 127
           V  V+K+   +P  A++ F     +   KH+   +  +++ LG +  F+AM + +    M
Sbjct: 10  VAAVVKYQ-KNPLKALEIFNSVKKEDGFKHTLLTYKGMIEKLGFHGEFEAMEEVLAETRM 68

Query: 128 KKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTI 187
             +N L    +     +Y    ++++A+  F+ M+ + C+  V + N++++ I  + +  
Sbjct: 69  NIDNGLLEGVYIGAMRNYGRKGKIQEAVDVFERMDFFNCEPSVQSYNAIMN-ILVEYRYF 127

Query: 188 DAWQ--FLRVVDGRIKPDNDTYAI-----------------------------------L 210
           D     ++R+ D  I PD  T+ I                                   +
Sbjct: 128 DQAHKVYMRMRDKGIVPDVYTFTIRMKSFCRTSRPHAARRLLNNMPSQGCESSAVAYCTV 187

Query: 211 LEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMME 270
           + G+ +E     A + F EM + +G  PD + A++  + TL +    + E+   L ++++
Sbjct: 188 IGGFYEENHRVEAHELFEEM-LGLGICPD-IMAFNKLIHTLCRK-GHVQESERLLNKVLK 244

Query: 271 RGCNP------------------------------GMTFFKLAFEECLTG--QNLR--GA 296
           RG +P                              G+T   + +   + G  +N +   A
Sbjct: 245 RGVSPNLFTVNIFIQGFCQRAMLNEAIRLLDGVGRGLTPDVITYNTLICGLCKNFKVVEA 304

Query: 297 EFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFE 356
           E     MV   G+ PD   YN +I  YC       A ++L +  + G  PD  TY  L  
Sbjct: 305 EHYLRKMVNE-GYEPDGFTYNSIIDGYCKLGMMQNADQILRDGAFKGFVPDESTYCSLIN 363

Query: 357 FLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSD 416
            L +   +  A  +FNE ++     N   C   V+          A+K    M EN CS 
Sbjct: 364 GLCQDGDIDRAINVFNEAMEKGLKPNLVLCNTLVKGLSQQGLILQALKLMNEMSENGCSP 423

Query: 417 LSETGNLLVAGLCDMHMLPEA 437
              T NL++ GLC +  + +A
Sbjct: 424 DIWTYNLVINGLCKIGCVSDA 444



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 78/339 (23%), Positives = 133/339 (39%), Gaps = 44/339 (12%)

Query: 131 NVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAW 190
           N+ ++  F   F    +   + +AI   D + + G   DV   N+L+  +C++ K ++A 
Sbjct: 250 NLFTVNIFIQGFCQRAM---LNEAIRLLDGVGR-GLTPDVITYNTLICGLCKNFKVVEAE 305

Query: 191 QFLR-VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLI 249
            +LR +V+   +PD  TY  +++G+ K   + NA +   +   + G+ PD    Y S + 
Sbjct: 306 HYLRKMVNEGYEPDGFTYNSIIDGYCKLGMMQNADQILRDGAFK-GFVPDE-STYCSLIN 363

Query: 250 TLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGF 309
            L +  D I   +N     ME+G  P +        + L+ Q L          +   G 
Sbjct: 364 GLCQDGD-IDRAINVFNEAMEKGLKPNLVLCN-TLVKGLSQQGLILQALKLMNEMSENGC 421

Query: 310 RPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASG 369
            PD   YN++I+  C       A  L+ + +  G  PD+ T+N L +   K  KL  A  
Sbjct: 422 SPDIWTYNLVINGLCKIGCVSDADNLVIDAIAKGHLPDVFTFNTLIDGYCKKLKLDNAIE 481

Query: 370 LFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLC 429
           + + M                               W + +    S    T N ++ GLC
Sbjct: 482 IVDRM-------------------------------WNHGV----SPDVITYNSILNGLC 506

Query: 430 DMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARK 468
                 + +   K M EKG        + L +   KARK
Sbjct: 507 KAGKYEDVMGTFKLMMEKGCVPNIITYNILTESFCKARK 545


>gi|357142605|ref|XP_003572629.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 543

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 76/284 (26%), Positives = 125/284 (44%), Gaps = 13/284 (4%)

Query: 102 YAWN-LVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDV 160
           + +N L+  L  + C+ DA+      + +    S+ T++ +  +       K A+   D 
Sbjct: 161 FTYNPLIRALCVRGCVLDALAVFDDMLHRGCSPSVVTYSILLDATCKESGYKQAVVLLDE 220

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDG-RIKPDNDTYAILLEGWEKERD 219
           M   GC+ D+   N L++A+C  G   +A + L  +     KPD  TY  +L+       
Sbjct: 221 MRSKGCEPDIVTYNVLINAMCSQGDVGEALKVLNSLPSYGCKPDAVTYTPVLKSLCSSER 280

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL-KGCDGIYETVNSLKRMMERGCNPGMT 278
              A K   +M       PD V  +++ + +L  KG  G    V  L +M E GC P + 
Sbjct: 281 WEEADKLLTKM-FSNDCAPDEV-TFNAVITSLCQKGFVGRATKV--LAQMSEHGCTPDII 336

Query: 279 FFKLAFE----ECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMK 334
            +    +    E    + ++  + +   MV +    PD   +N +I+  C       A+K
Sbjct: 337 TYSSIMDGLCKERRVDEAIKLLKELLAEMVSK-NCIPDQVTFNTIITSLCQKGLFDRAIK 395

Query: 335 LLDEMVYNGAFPDIQTYNILFE-FLVKGRKLWEASGLFNEMVKN 377
           ++DEM  +G  PDI TYN + + FL K  K  EA  L N MV N
Sbjct: 396 VVDEMSEHGCIPDITTYNCIVDGFLCKSCKTEEALDLLNLMVSN 439



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 67/276 (24%), Positives = 120/276 (43%), Gaps = 15/276 (5%)

Query: 170 VFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDND--TYAILLEGWEKERDVANAKKTF 227
           V   N L+  +C DG+  DA    RVV+  + P     TY  ++ G+ +  ++  A++  
Sbjct: 96  VIPCNILIKKLCADGRVADAE---RVVEA-LGPSATIITYNTMVNGYCRAGNIDAARR-- 149

Query: 228 GEMVIEVGWDPDNVPAYDSYLITL-LKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEE 286
             M+  V + PD    Y+  +  L ++GC  + + +     M+ RGC+P +  + +  + 
Sbjct: 150 --MIDSVPFAPDTF-TYNPLIRALCVRGC--VLDALAVFDDMLHRGCSPSVVTYSILLDA 204

Query: 287 CLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFP 346
                  + A  +   M  + G  PD   YN++I+  C   + G A+K+L+ +   G  P
Sbjct: 205 TCKESGYKQAVVLLDEMRSK-GCEPDIVTYNVLINAMCSQGDVGEALKVLNSLPSYGCKP 263

Query: 347 DIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFW 406
           D  TY  + + L    +  EA  L  +M  N+   +     A +           A K  
Sbjct: 264 DAVTYTPVLKSLCSSERWEEADKLLTKMFSNDCAPDEVTFNAVITSLCQKGFVGRATKVL 323

Query: 407 KYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAK 442
             M E+ C+    T + ++ GLC    + EA+K  K
Sbjct: 324 AQMSEHGCTPDIITYSSIMDGLCKERRVDEAIKLLK 359



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 74/316 (23%), Positives = 122/316 (38%), Gaps = 39/316 (12%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-F 192
           ++ T+ ++ + Y  A  +  A    D +       D F  N L+ A+C  G  +DA   F
Sbjct: 127 TIITYNTMVNGYCRAGNIDAARRMIDSVPF---APDTFTYNPLIRALCVRGCVLDALAVF 183

Query: 193 LRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
             ++     P   TY+ILL+   KE     A     EM  + G +PD V  Y+  LI  +
Sbjct: 184 DDMLHRGCSPSVVTYSILLDATCKESGYKQAVVLLDEMRSK-GCEPDIV-TYN-VLINAM 240

Query: 253 KGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD 312
                + E +  L  +   GC P    +    +   + +    A+ +   M       PD
Sbjct: 241 CSQGDVGEALKVLNSLPSYGCKPDAVTYTPVLKSLCSSERWEEADKLLTKMFSN-DCAPD 299

Query: 313 THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFN 372
              +N +I+  C     G A K+L +M  +G  PDI TY+ + + L K R++ EA  L  
Sbjct: 300 EVTFNAVITSLCQKGFVGRATKVLAQMSEHGCTPDIITYSSIMDGLCKERRVDEAIKLLK 359

Query: 373 EMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMH 432
           E++                                 M+  +C     T N ++  LC   
Sbjct: 360 ELLAE-------------------------------MVSKNCIPDQVTFNTIITSLCQKG 388

Query: 433 MLPEAVKYAKGMAEKG 448
           +   A+K    M+E G
Sbjct: 389 LFDRAIKVVDEMSEHG 404



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 63/244 (25%), Positives = 101/244 (41%), Gaps = 10/244 (4%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-- 194
           TF +V +S      V  A      M ++GC  D+   +S++  +C++ +  +A + L+  
Sbjct: 302 TFNAVITSLCQKGFVGRATKVLAQMSEHGCTPDIITYSSIMDGLCKERRVDEAIKLLKEL 361

Query: 195 ---VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITL 251
              +V     PD  T+  ++    ++     A K   EM  E G  PD +  Y+  +   
Sbjct: 362 LAEMVSKNCIPDQVTFNTIITSLCQKGLFDRAIKVVDEMS-EHGCIPD-ITTYNCIVDGF 419

Query: 252 LKGCDGIYETVNSLKRMMERGCNPGMTFFK-LAFEECLTGQNLRGAEFIWGAMVGRIGFR 310
           L       E ++ L  M+  G  P  T +K LAF   L+ ++           V  +G  
Sbjct: 420 LCKSCKTEEALDLLNLMVSNGLCPDTTTYKSLAFG--LSREDEMERAIGMFRRVQAMGLS 477

Query: 311 PDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGL 370
           PD  +YN ++   C    T  A+     MV NG  PD  TY IL E +     L EA  L
Sbjct: 478 PDKMLYNAILLGLCKKWRTDLAIDFFAYMVSNGCMPDESTYIILVEGIAYEGFLEEAKEL 537

Query: 371 FNEM 374
              +
Sbjct: 538 LGNL 541


>gi|225451367|ref|XP_002263590.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680 [Vitis vinifera]
 gi|296087085|emb|CBI33459.3| unnamed protein product [Vitis vinifera]
          Length = 592

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 87/365 (23%), Positives = 156/365 (42%), Gaps = 69/365 (18%)

Query: 77  SYSHPGPAVKFFRWSAYQLNDKHSP--YAWNLVVDLLGK-------NCLFDAMWDAIKSM 127
            Y   G   + FR   + + ++  P  + ++++++ L K       N LF  M D  + +
Sbjct: 269 GYCKSGNLDQGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEMCD--RGL 326

Query: 128 KKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTI 187
              +V    TF ++ + + V  R    +  +  M + G K DV   N+L++ +C+ G   
Sbjct: 327 VPNDV----TFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLR 382

Query: 188 DAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDS 246
           +A + +  +  R +KPD  TY +L++G  KE D+ +A +   EMV E G + DNV A+ +
Sbjct: 383 EAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESALEIRKEMVKE-GIELDNV-AFTA 440

Query: 247 YLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGR 306
            LI+       + E   +L+ M+E                                    
Sbjct: 441 -LISGFCREGQVIEAERTLREMLE------------------------------------ 463

Query: 307 IGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWE 366
            G +PD   Y M+I  +C   +     KLL EM  +G  P + TYN+L   L K  ++  
Sbjct: 464 AGIKPDDATYTMVIHGFCKKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGLCKQGQMKN 523

Query: 367 ASGLFNEMVK--------NENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLS 418
           A+ L + M+           N+L   +C+   R   D       ++  K +++++ S  S
Sbjct: 524 ANMLLDAMLNLGVVPDDITYNILLEGHCKHGNREDFDK------LQSEKGLVQDYGSYTS 577

Query: 419 ETGNL 423
             G+L
Sbjct: 578 LIGDL 582



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 76/301 (25%), Positives = 122/301 (40%), Gaps = 42/301 (13%)

Query: 150 RVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYA 208
           ++ +A   F  + + G +  V + N+L++  C+ G     ++  R +++ R+ PD  TY+
Sbjct: 240 KINEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSGNLDQGFRLKRFMMENRVFPDVFTYS 299

Query: 209 ILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRM 268
           +L+ G  KE  + +A K F EM                        CD            
Sbjct: 300 VLINGLCKEGQLDDANKLFLEM------------------------CD------------ 323

Query: 269 MERGCNPG-MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSN 327
             RG  P  +TF  L    C+TG+   G E I+  M+ R G +PD   YN +I+  C   
Sbjct: 324 --RGLVPNDVTFTTLINGHCVTGRADLGME-IYQQML-RKGVKPDVITYNTLINGLCKVG 379

Query: 328 ETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCR 387
           +   A KL+ EM   G  PD  TY +L +   K   L  A  +  EMVK    L++    
Sbjct: 380 DLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESALEIRKEMVKEGIELDNVAFT 439

Query: 388 AAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEK 447
           A +  +        A +  + M+E        T  +++ G C    +    K  K M   
Sbjct: 440 ALISGFCREGQVIEAERTLREMLEAGIKPDDATYTMVIHGFCKKGDVKTGFKLLKEMQCD 499

Query: 448 G 448
           G
Sbjct: 500 G 500



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 90/432 (20%), Positives = 167/432 (38%), Gaps = 71/432 (16%)

Query: 37  PTIKTLCEIIANTPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPA--VKFFRWSAYQ 94
           P + T+ E I  +P+  +   L + L  ++   +  ++  +     P   + FF+W + Q
Sbjct: 37  PILTTISEAIKVSPTKPLHSSLKRILPSLTPNHLIDLINLNPHSLSPPSLLSFFKWLSTQ 96

Query: 95  LNDKHSPYAWNLVVDLLGKNCLF---DAMWDAIKSMKKENVLSLATFASVFSSYVVADRV 151
            + + S +++  +   L  + +     ++   + S K +N  S     SVF+S       
Sbjct: 97  HHFRLSIHSYCTMTHFLCTHKMLSEAQSLLQFVVSRKGKNSAS-----SVFTS------- 144

Query: 152 KDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILL 211
                   V+E  G        + L++A    G   DA Q  R+V    +  N       
Sbjct: 145 --------VLEARGTHQSNLVFSVLMNAYTDSGYFSDAIQCFRLV----RKHNLQIPFHS 192

Query: 212 EGWEKER----DVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKR 267
            G+  +R    ++ +    F E +++ G+ PD                      V     
Sbjct: 193 CGYLFDRLMKLNLTSPAWAFYEEILDCGYPPD----------------------VCKFNV 230

Query: 268 MMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSN 327
           +M R C                   +  A+ ++G  +G+ G RP    +N +I+ YC S 
Sbjct: 231 LMHRLCKE---------------HKINEAQLLFGE-IGKRGLRPTVVSFNTLINGYCKSG 274

Query: 328 ETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCR 387
                 +L   M+ N  FPD+ TY++L   L K  +L +A+ LF EM     V N     
Sbjct: 275 NLDQGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFT 334

Query: 388 AAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEK 447
             +  +  +    + ++ ++ M+         T N L+ GLC +  L EA K    M ++
Sbjct: 335 TLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQR 394

Query: 448 GIQVTPFALSKL 459
           G++   F  + L
Sbjct: 395 GLKPDKFTYTML 406


>gi|242063942|ref|XP_002453260.1| hypothetical protein SORBIDRAFT_04g002660 [Sorghum bicolor]
 gi|241933091|gb|EES06236.1| hypothetical protein SORBIDRAFT_04g002660 [Sorghum bicolor]
          Length = 866

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 76/333 (22%), Positives = 138/333 (41%), Gaps = 21/333 (6%)

Query: 122 DAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAIC 181
           DA+K +     ++L    +V + +     V++A    + M   G   +V   N+ +SA+C
Sbjct: 194 DALKVLDGMPSMNLVVCNTVVAGFCKEGLVEEAERLVERMRVQGLAPNVVTFNARISALC 253

Query: 182 RDGKTIDAWQFLRVVD-----GRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGW 236
           + G+ +DA++  + +      G  +PD  T+ ++L G+     V  A+      ++  G 
Sbjct: 254 KAGRVLDAYRIFQDMQEDWQHGLPRPDQVTFDVMLSGFCDAGFVDEARVLVD--IMRCGG 311

Query: 237 DPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNP-GMTFFKLAFEECLTGQNL-- 293
               V +Y+ +L  L++    + E    L+ M   G  P   T+  +    C  G+    
Sbjct: 312 FLRRVESYNRWLSGLVRN-GRVGEAQELLREMAHEGIQPNSYTYNIIVSGLCKEGKAFDA 370

Query: 294 -RGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYN 352
            R   FI   ++      PD   Y  ++  YC      AA ++LDEM   G  P+  TYN
Sbjct: 371 RRVENFIRSGVMS-----PDVVTYTSLLHAYCSKGNIAAANRILDEMAQKGCAPNSFTYN 425

Query: 353 ILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIEN 412
           +L + L +  +  EA  L   M +    L+   C   +     +    VA+     M E 
Sbjct: 426 VLLQSLWRAGRTTEAERLLERMNEKGYSLDTAGCNIIIDGLCRNSRLDVAMDIVDGMWEE 485

Query: 413 HCSDLSETGNLLVAGLCDMHM----LPEAVKYA 441
               L   GN  ++ + D  +    LP+ + Y+
Sbjct: 486 GSGALGRLGNSFLSVVSDSSISQRCLPDQITYS 518



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 87/338 (25%), Positives = 136/338 (40%), Gaps = 30/338 (8%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-V 195
           TF  + S +  A  V +A    D+M   G    V + N  LS + R+G+  +A + LR +
Sbjct: 283 TFDVMLSGFCDAGFVDEARVLVDIMRCGGFLRRVESYNRWLSGLVRNGRVGEAQELLREM 342

Query: 196 VDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL-KG 254
               I+P++ TY I++ G  KE    +A++   E  I  G    +V  Y S L     KG
Sbjct: 343 AHEGIQPNSYTYNIIVSGLCKEGKAFDARRV--ENFIRSGVMSPDVVTYTSLLHAYCSKG 400

Query: 255 CDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTH 314
              I      L  M ++GC P    + +  +          AE +   M  + G+  DT 
Sbjct: 401 --NIAAANRILDEMAQKGCAPNSFTYNVLLQSLWRAGRTTEAERLLERMNEK-GYSLDTA 457

Query: 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGA-----------------------FPDIQTY 351
             N++I   C ++    AM ++D M   G+                        PD  TY
Sbjct: 458 GCNIIIDGLCRNSRLDVAMDIVDGMWEEGSGALGRLGNSFLSVVSDSSISQRCLPDQITY 517

Query: 352 NILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIE 411
           +IL   L K  +  EA     EM+  +   +       +  Y       +AIK  + M +
Sbjct: 518 SILISALCKEGRFDEAKKKLLEMIVKDISPDSVIYDTFIHGYCKHGKTSLAIKVLRDMEK 577

Query: 412 NHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
             C+  + T NLL+ G  + H   E +K    M EKGI
Sbjct: 578 KGCNPSTRTYNLLIRGFEEKHKSEEIMKLMSEMKEKGI 615



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 89/387 (22%), Positives = 147/387 (37%), Gaps = 105/387 (27%)

Query: 82  GPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNC-LFDAMWDAIKSMKKENVLS--LATF 138
           G A +  R  A++    +S Y +N++V  L K    FDA    +++  +  V+S  + T+
Sbjct: 333 GEAQELLREMAHEGIQPNS-YTYNIIVSGLCKEGKAFDA--RRVENFIRSGVMSPDVVTY 389

Query: 139 ASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR---- 194
            S+  +Y     +  A    D M Q GC  + F  N LL ++ R G+T +A + L     
Sbjct: 390 TSLLHAYCSKGNIAAANRILDEMAQKGCAPNSFTYNVLLQSLWRAGRTTEAERLLERMNE 449

Query: 195 ----------------------------VVDG---------------------------R 199
                                       +VDG                           R
Sbjct: 450 KGYSLDTAGCNIIIDGLCRNSRLDVAMDIVDGMWEEGSGALGRLGNSFLSVVSDSSISQR 509

Query: 200 IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIY 259
             PD  TY+IL+    KE     AKK   EM+++    PD+V  YD+++    K      
Sbjct: 510 CLPDQITYSILISALCKEGRFDEAKKKLLEMIVK-DISPDSV-IYDTFIHGYCKH-GKTS 566

Query: 260 ETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMM 319
             +  L+ M ++GCNP                                     T  YN++
Sbjct: 567 LAIKVLRDMEKKGCNP------------------------------------STRTYNLL 590

Query: 320 ISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNEN 379
           I  +   +++   MKL+ EM   G  P++ TYN L +   +   + +A  L +EM++NE 
Sbjct: 591 IRGFEEKHKSEEIMKLMSEMKEKGISPNVMTYNSLIKSFCQQGMVNKAMPLLDEMLQNEL 650

Query: 380 VLNHENCRAAVRVYMD-SDDPYVAIKF 405
           V N  +    ++ Y   +D P   + F
Sbjct: 651 VPNITSFDLLIKAYCKITDFPSAQMVF 677



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 73/318 (22%), Positives = 122/318 (38%), Gaps = 15/318 (4%)

Query: 165 GCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAK 224
           G + DVF  N LL A+C  G+   A    RV D     +  ++ IL  G+        A 
Sbjct: 140 GAQPDVFTRNLLLQALCDAGRMELAQ---RVFDAMPARNEFSFGILARGY------CRAG 190

Query: 225 KTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSL-KRMMERGCNPGMTFFKLA 283
           ++   + +  G    N+   ++ +    K  +G+ E    L +RM  +G  P +  F   
Sbjct: 191 RSIDALKVLDGMPSMNLVVCNTVVAGFCK--EGLVEEAERLVERMRVQGLAPNVVTFNAR 248

Query: 284 FEECLTGQNLRGAEFIWGAMVG--RIGF-RPDTHMYNMMISLYCYSNETGAAMKLLDEMV 340
                    +  A  I+  M    + G  RPD   +++M+S +C +     A  L+D M 
Sbjct: 249 ISALCKAGRVLDAYRIFQDMQEDWQHGLPRPDQVTFDVMLSGFCDAGFVDEARVLVDIMR 308

Query: 341 YNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPY 400
             G    +++YN     LV+  ++ EA  L  EM       N       V         +
Sbjct: 309 CGGFLRRVESYNRWLSGLVRNGRVGEAQELLREMAHEGIQPNSYTYNIIVSGLCKEGKAF 368

Query: 401 VAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLK 460
            A +   ++     S    T   L+   C    +  A +    MA+KG     F  + L 
Sbjct: 369 DARRVENFIRSGVMSPDVVTYTSLLHAYCSKGNIAAANRILDEMAQKGCAPNSFTYNVLL 428

Query: 461 QILIKARKEAVYEELLKK 478
           Q L +A +    E LL++
Sbjct: 429 QSLWRAGRTTEAERLLER 446


>gi|451798817|gb|AGF69112.1| PPR [Raphanus sativus]
          Length = 479

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 82/328 (25%), Positives = 135/328 (41%), Gaps = 54/328 (16%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           +L TF ++     V DRV +A+  F  M    CK +V    +L++ +CR+G+ ++A   L
Sbjct: 49  TLVTFNTLLHGLCVEDRVSEALDLFHQM----CKPNVVTFTTLMNGLCREGRVVEAVALL 104

Query: 194 -RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
            R+V+  ++P+  TY  +++G  K  D  +A     +M       PD V  Y + +  L 
Sbjct: 105 DRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEELSHIKPD-VVIYSAIIDGLW 163

Query: 253 KGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD 312
           K  DG +    +L   M+                                     G  PD
Sbjct: 164 K--DGRHTDAQNLFIEMQDK-----------------------------------GIFPD 186

Query: 313 THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFN 372
              Y+ MI+ +C S +   A +LL EM+     PD+ T++ L   LVK   L  A  L  
Sbjct: 187 IVTYSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQ 246

Query: 373 EMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIE-----------NHCSDLSETG 421
           EM+ +    N   C   +    DS     A++ +K M +           N      +T 
Sbjct: 247 EMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTY 306

Query: 422 NLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
           N+L++GL +     EA +  + M  +GI
Sbjct: 307 NILISGLINEGKFLEAEELYEEMPHRGI 334



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 82/341 (24%), Positives = 139/341 (40%), Gaps = 20/341 (5%)

Query: 122 DAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAIC 181
           D    M K NV+   TF ++ +      RV +A+   D M + G + +     +++  +C
Sbjct: 71  DLFHQMCKPNVV---TFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMC 127

Query: 182 RDGKTIDAWQFLRVVD--GRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPD 239
           + G T+ A   LR ++    IKPD   Y+ +++G  K+    +A+  F EM  + G  PD
Sbjct: 128 KMGDTVSALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQ-DKGIFPD 186

Query: 240 NVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFI 299
            V    S +I          E    L+ M+ R  +P +  F       +   +L  A+ +
Sbjct: 187 IVTY--SCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDL 244

Query: 300 WGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEM-----------VYNGAFPDI 348
              M+   G  P+    N ++   C S +   A+++   M            +NG  PD+
Sbjct: 245 LQEMISS-GVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDV 303

Query: 349 QTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKY 408
           QTYNIL   L+   K  EA  L+ EM     V +     + +           A + +  
Sbjct: 304 QTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMFDS 363

Query: 409 MIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
           M     S    T N L+ G C   M+ + ++    M  +GI
Sbjct: 364 MGSKSFSPNIVTFNTLITGYCKAGMVDDGLELFCEMGRRGI 404



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 69/278 (24%), Positives = 115/278 (41%), Gaps = 22/278 (7%)

Query: 150 RVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYA 208
           R  DA   F  M+  G   D+   + +++  C  GK  +A + L+ ++  +I PD  T++
Sbjct: 167 RHTDAQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFS 226

Query: 209 ILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG-CDG-----IYETV 262
            L+    KE D+ +A+    EM I  G  P+ V        TLL G CD        E  
Sbjct: 227 GLINALVKEGDLNSAQDLLQEM-ISSGVCPNVVTCN-----TLLDGLCDSGKLKDALEMF 280

Query: 263 NSL-KRMME-------RGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTH 314
            ++ K MM+        G  P +  + +     +       AE ++  M  R G  PDT 
Sbjct: 281 KAMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHR-GIVPDTV 339

Query: 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
            Y+ MI+  C  +    A ++ D M      P+I T+N L     K   + +   LF EM
Sbjct: 340 TYSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDGLELFCEM 399

Query: 375 VKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIEN 412
            +   V N       +R +    +   ++  ++ MI +
Sbjct: 400 GRRGIVANAITYITLIRGFRKVGNINGSLDIFQEMISS 437



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 59/253 (23%), Positives = 97/253 (38%), Gaps = 18/253 (7%)

Query: 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR 194
           + TF+ + ++ V    +  A      M   G   +V   N+LL  +C  GK  DA +  +
Sbjct: 222 VVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFK 281

Query: 195 VVD------------GRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVP 242
            +               ++PD  TY IL+ G   E     A++ + EM    G  PD V 
Sbjct: 282 AMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMP-HRGIVPDTV- 339

Query: 243 AYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWG 301
            Y S +  L K    + E       M  +  +P + TF  L    C  G    G E    
Sbjct: 340 TYSSMINGLCKQ-SRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDGLELF-- 396

Query: 302 AMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKG 361
             +GR G   +   Y  +I  +        ++ +  EM+ +G +PD  T   +   L   
Sbjct: 397 CEMGRRGIVANAITYITLIRGFRKVGNINGSLDIFQEMISSGVYPDTITIRNMLTGLWSK 456

Query: 362 RKLWEASGLFNEM 374
            +L +A  +  E+
Sbjct: 457 EELKKALAMLEEL 469


>gi|356561679|ref|XP_003549107.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g12775, mitochondrial-like [Glycine max]
          Length = 750

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 92/421 (21%), Positives = 167/421 (39%), Gaps = 65/421 (15%)

Query: 81  PGPAVKFFRWSAYQLNDKHSPYAWNL---------VVDLLGKNCL-------------FD 118
           P P   F    +  +N+KH P   +L           DL   N L             F 
Sbjct: 60  PPPTFHFNYILSSLVNNKHYPTVISLFKKFESNGATPDLCTLNILMNCFCHLTHITFAFS 119

Query: 119 AMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLS 178
            + + +K     N ++L T   +         +K A+   D +   G + +  +  +L++
Sbjct: 120 VLANILKRGYHPNAITLNT---LIKGLCFRGEIKKALYFHDQVVAQGFQLNQVSYRTLIN 176

Query: 179 AICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWD 237
            +C+ G+T    + LR ++G  +KPD   Y  ++    K + + +A   + EM+++ G  
Sbjct: 177 GLCKTGETKAVARLLRKLEGHSVKPDVVMYNTIIHSLCKNKLLGDACDLYSEMIVK-GIS 235

Query: 238 PDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAE 297
           P NV  Y++ L+        + E  + L  M  +  NP +  F    +       ++ A+
Sbjct: 236 P-NVVTYNA-LVYGFCIMGHLKEAFSLLNEMKLKNINPDVCTFNTLIDALGKEGKMKAAK 293

Query: 298 FIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEF 357
            +   M+ +   +PD   YN +I  Y + N+   A  +   M  +G  P+++TY  + + 
Sbjct: 294 IVLAVMM-KACIKPDVVTYNSLIDGYFFLNKVKNAKYVFYSMAQSGVTPNVRTYTTMIDG 352

Query: 358 LVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDL 417
           L K + + EA  LF EM                               +K MI +  +  
Sbjct: 353 LCKEKMVDEAMSLFEEMK------------------------------YKNMIPDIVTYT 382

Query: 418 SETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLK 477
           S     L+ GLC  H L  A+   K M E+GIQ   ++ + L   L K  +    +E  +
Sbjct: 383 S-----LIDGLCKNHHLERAIALCKKMKEQGIQPDVYSYTILLDALCKGGRLENAKEFFQ 437

Query: 478 K 478
           +
Sbjct: 438 R 438



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 97/439 (22%), Positives = 163/439 (37%), Gaps = 101/439 (23%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVM 161
            +N ++D LGK     A    +  M K  +   + T+ S+   Y   ++VK+A   F  M
Sbjct: 275 TFNTLIDALGKEGKMKAAKIVLAVMMKACIKPDVVTYNSLIDGYFFLNKVKNAKYVFYSM 334

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQ----------------FLRVVDGR------ 199
            Q G   +V    +++  +C++    +A                  +  ++DG       
Sbjct: 335 AQSGVTPNVRTYTTMIDGLCKEKMVDEAMSLFEEMKYKNMIPDIVTYTSLIDGLCKNHHL 394

Query: 200 --------------IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYD 245
                         I+PD  +Y ILL+   K   + NAK+ F  ++++ G+   NV  Y+
Sbjct: 395 ERAIALCKKMKEQGIQPDVYSYTILLDALCKGGRLENAKEFFQRLLVK-GYHL-NVQTYN 452

Query: 246 SYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAF------------EECLTGQNL 293
             +  L K  D   E ++   +M  +GC P    FK               E+ L     
Sbjct: 453 VMINGLCKA-DLFGEAMDLKSKMEGKGCMPDAITFKTIICALFEKDENDKAEKILREMIA 511

Query: 294 RGAE----------FIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNG 343
           RG +           I  A++ +   +PD   Y  ++  Y   NE   A  +   M   G
Sbjct: 512 RGLQEARKVRLKEAKIVLAVMTKACIKPDVVTYGTLMDGYFLVNELKHAKYVFYSMAQMG 571

Query: 344 AFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAI 403
             P++Q Y I+ + L K + + EA  LF EM        H+N    +  Y          
Sbjct: 572 VTPNVQCYTIMIDGLCKKKTVDEAMSLFEEM-------KHKNMFPNIVTYTS-------- 616

Query: 404 KFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQIL 463
                               L+  LC  H L  A+   K M E GIQ   ++ + L   L
Sbjct: 617 --------------------LIDALCKNHHLERAIALLKEMKEHGIQPDVYSYTILLDGL 656

Query: 464 IKARK----EAVYEELLKK 478
            K+ +    + +++ LL K
Sbjct: 657 CKSGRLEGAKEIFQRLLVK 675


>gi|218194637|gb|EEC77064.1| hypothetical protein OsI_15455 [Oryza sativa Indica Group]
          Length = 864

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/244 (25%), Positives = 114/244 (46%), Gaps = 8/244 (3%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAW-QFLRV 195
            F  + ++Y     +  A+  F+ M+  G   D     +++S++CR G+  DA  +F  +
Sbjct: 404 VFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHM 463

Query: 196 VDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
           VD  + P    Y  L++G     ++  AK+   EM +     P  V  + S +  L K  
Sbjct: 464 VDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEM-MNKDIPPPGVKYFSSIINNLCK-- 520

Query: 256 DG-IYETVNSLKRMMERGCNPGMTFFKLAFEE-CLTGQNLRGAEFIWGAMVGRIGFRPDT 313
           +G + E  + +  M++ G  P +  F    E  CL G N+  A  +  AM   IG  P+ 
Sbjct: 521 EGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVG-NMEEAFALLDAM-ASIGIEPNC 578

Query: 314 HMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNE 373
           ++Y  ++  YC +     A+ +  +M++ G  P    Y+I+   L + R+   A  +F+E
Sbjct: 579 YIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLFQARRTTAAKKMFHE 638

Query: 374 MVKN 377
           M+++
Sbjct: 639 MIES 642



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 102/455 (22%), Positives = 182/455 (40%), Gaps = 97/455 (21%)

Query: 81  PGPAVKFF----RWSAYQLNDKHSP---YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL 133
           P  A++ F    RW+      +HSP   + +N+++D   +    D +  AI     +N L
Sbjct: 133 PALAIELFKRMDRWAC----PRHSPPTIHTYNILIDCYRRVHRPD-LGLAIVGRLLKNGL 187

Query: 134 SLATFA-SVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQF 192
               F+ S+   +V    V  A   F  M + G    +   NS++  +C+  +   A   
Sbjct: 188 GPDDFSYSLIYGFVKDGEVDKAHCLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESI 247

Query: 193 L-RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITL 251
           + ++VD  I PD  TY+++++G  K + +  A++   +MV E G  P+++  Y+S    L
Sbjct: 248 VQKMVDSGIAPDLFTYSLIIDGLCKSKAMDKAERVLEQMV-EAGTRPNSI-TYNS----L 301

Query: 252 LKG--CDGIY-ETVNSLKRMMERGCNPGM----TFFKLAFE-------ECL--------- 288
           + G    G++ E+V   K+M   G  P +    +F    F+       +C+         
Sbjct: 302 IHGYSISGMWNESVRVFKQMSSCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGP 361

Query: 289 -----------------TGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGA 331
                            T   L     I+  M+ + G  P+ H++N++I+ Y        
Sbjct: 362 KPDIISYSTMLHGYATATDSCLADVHNIFNLMLTK-GIAPNKHVFNILINAYARCGMMDK 420

Query: 332 AMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK-------------NE 378
           AM + ++M   G  PD  T+  +   L +  +L +A   FN MV               +
Sbjct: 421 AMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQ 480

Query: 379 NVLNHENCRAA---VRVYMDSDDPYVAIKFWKYMIENHCSD------------LSETG-- 421
              NH     A   +   M+ D P   +K++  +I N C +            + +TG  
Sbjct: 481 GCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQR 540

Query: 422 ------NLLVAGLCDMHMLPEAVKYAKGMAEKGIQ 450
                 N L+ G C +  + EA      MA  GI+
Sbjct: 541 PNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIE 575



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 72/347 (20%), Positives = 136/347 (39%), Gaps = 55/347 (15%)

Query: 81  PGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFAS 140
           P P VK+F      L  +        ++D++            +++ ++ NV+   TF S
Sbjct: 504 PPPGVKYFSSIINNLCKEGRVAEGKDIMDMM------------VQTGQRPNVV---TFNS 548

Query: 141 VFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGR 199
           +   Y +   +++A    D M   G + + +   +L+   C++G+  DA    R ++   
Sbjct: 549 LMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKG 608

Query: 200 IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIY 259
           +KP +  Y+I+L G  + R    AKK F EM IE G       +  +Y            
Sbjct: 609 VKPTSVLYSIILHGLFQARRTTAAKKMFHEM-IESG----TTVSIHTY------------ 651

Query: 260 ETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMM 319
                           G+    L    C    N+   +         +  + D   +N++
Sbjct: 652 ----------------GVVLGGLCRNNCTDEANMLLEKLF------AMNVKFDIITFNIV 689

Query: 320 ISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNEN 379
           IS          A +L D +   G  P+IQTY+++   L+K     EA  LF  + K+ +
Sbjct: 690 ISAMFKVGRRQEAKELFDAISTYGLVPNIQTYSMMITNLIKEESYEEADNLFISVEKSGH 749

Query: 380 VLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVA 426
             +       VR+ ++  +   A  +   + EN+ +  + T +LL +
Sbjct: 750 ASDSRLLNHIVRMLLNKAEVAKASNYLSIIGENNLTLEASTISLLAS 796


>gi|357499275|ref|XP_003619926.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494941|gb|AES76144.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 727

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/258 (27%), Positives = 103/258 (39%), Gaps = 36/258 (13%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           T+      Y    RV+DA+  FD M + G   ++   NSL+  +C+ G+   AW+ ++ +
Sbjct: 327 TYNVFIHGYCKVGRVRDAVRVFDEMCREGVVPNIVTYNSLIDCLCKAGEVSGAWEIVKTM 386

Query: 197 D-GRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDN--------------- 240
               + PD  T  ILL+G  K + +  A   F ++V E G  PD                
Sbjct: 387 HRSGLTPDIVTCCILLDGLCKSKRLDQAILLFNQLV-ESGLTPDVWSYTILIHGCCTSRR 445

Query: 241 ----------------VPAYDSY--LITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKL 282
                           VP   +Y  LI  L     I      L  M  +G  P    + +
Sbjct: 446 MGEAMNLLRDMHLKNLVPHIVTYSCLIDGLCRSGRISNAWRLLNEMHVKGPLPDTITYSI 505

Query: 283 AFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYN 342
             +     Q+L  A F++  M+ R G  PD   Y +MI  YC S     A+ L  EM   
Sbjct: 506 LLDALWKKQHLDEAVFLFNQMIKR-GLEPDVMCYTIMIDGYCKSERIDEAINLFREMHMK 564

Query: 343 GAFPDIQTYNILFEFLVK 360
              PDI TY ILF  + K
Sbjct: 565 NLVPDIVTYTILFNAVFK 582



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 60/236 (25%), Positives = 106/236 (44%), Gaps = 21/236 (8%)

Query: 151 VKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDT---- 206
           V +    ++ M   G   + F   SL+  +C  GK ++ +    +VD  I+   D     
Sbjct: 201 VDEGFEFYNEMMGNGVCPNEFTYGSLIRGLCGVGKFLEGFG---LVDEMIRRGLDVSVYV 257

Query: 207 YAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLK 266
           + +L++G  K   +  A++ F EMV   G++P+ V        T L G   +   V+  +
Sbjct: 258 FTVLIDGLCKNGMLVEAREMFDEMV-NRGYEPNIVTC------TALMGGYCLKGNVDMAR 310

Query: 267 RMMERGCNPGM-----TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMIS 321
            + +     G      T+       C  G+ +R A  ++  M  R G  P+   YN +I 
Sbjct: 311 ELFDAIGEWGFKRDVWTYNVFIHGYCKVGR-VRDAVRVFDEMC-REGVVPNIVTYNSLID 368

Query: 322 LYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKN 377
             C + E   A +++  M  +G  PDI T  IL + L K ++L +A  LFN++V++
Sbjct: 369 CLCKAGEVSGAWEIVKTMHRSGLTPDIVTCCILLDGLCKSKRLDQAILLFNQLVES 424



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 72/328 (21%), Positives = 124/328 (37%), Gaps = 32/328 (9%)

Query: 151 VKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAI 209
           V  + + F  + + G   D  ALN++L  +C +G  + A +F   +V+     +  +Y I
Sbjct: 88  VSFSFSIFGKILKRGYGLDTVALNTVLKGLCVNGGVLKALEFHDEIVNNGFSLNEVSYGI 147

Query: 210 LLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMM 269
           L+ G                 + E G   + V           K  DG +   N +   +
Sbjct: 148 LING-----------------LCENGRVNEAVNLLRMIEKEKEKEKDGFFVKGNVVMYSI 190

Query: 270 ERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNET 329
              C             C  G    G EF +  M+G  G  P+   Y  +I   C   + 
Sbjct: 191 VIDC------------LCRNGFVDEGFEF-YNEMMGN-GVCPNEFTYGSLIRGLCGVGKF 236

Query: 330 GAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAA 389
                L+DEM+  G    +  + +L + L K   L EA  +F+EMV      N   C A 
Sbjct: 237 LEGFGLVDEMIRRGLDVSVYVFTVLIDGLCKNGMLVEAREMFDEMVNRGYEPNIVTCTAL 296

Query: 390 VRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
           +  Y    +  +A + +  + E        T N+ + G C +  + +AV+    M  +G+
Sbjct: 297 MGGYCLKGNVDMARELFDAIGEWGFKRDVWTYNVFIHGYCKVGRVRDAVRVFDEMCREGV 356

Query: 450 QVTPFALSKLKQILIKARKEAVYEELLK 477
                  + L   L KA + +   E++K
Sbjct: 357 VPNIVTYNSLIDCLCKAGEVSGAWEIVK 384


>gi|125537564|gb|EAY84052.1| hypothetical protein OsI_39281 [Oryza sativa Indica Group]
          Length = 762

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 79/327 (24%), Positives = 145/327 (44%), Gaps = 10/327 (3%)

Query: 52  PTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLL 111
           P    VLD    ++      QVLK  + H   A+ FF+W   Q   KH  +++  ++ +L
Sbjct: 318 PMTGHVLDNLHCKIDAFQANQVLKLLHDHT-IALGFFQWLKRQPGFKHDGHSYTTMIGIL 376

Query: 112 GKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDV 170
           G+   F  M   +  M   +   ++ T+  +  +Y  A+ +++A+  F+ M++ G + D 
Sbjct: 377 GQARQFGTMRKLLDEMNSVHCKPTVVTYNRIIHAYGRANYLREAVKVFEEMQKAGYEPDR 436

Query: 171 FALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGE 229
               +L+    + G    A   + R+ +  + PD  TY+ ++    K   +A A K F E
Sbjct: 437 VTYCTLIDIHAKGGYLEVAMDLYTRMQEVGLSPDTFTYSAMVNCLGKGGHLAAAYKLFCE 496

Query: 230 MVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSL-KRMMERGCNPGMTFFKLAFEECL 288
           MV E G  P N+  Y+  ++  L+     YE V  L K M   G  P    + +  E   
Sbjct: 497 MV-ENGCTP-NLVTYN--IMIALQAKARNYENVVKLYKDMQVAGFRPDKITYSIVMEVLG 552

Query: 289 TGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDI 348
              +L  AE ++  M  R  + PD  +Y +++ L+  +     A+     M+ +G  P++
Sbjct: 553 HCGHLDEAEAVFIEM--RHDWAPDEPVYGLLVDLWGKAGNVDKALGWYHAMLQDGLQPNV 610

Query: 349 QTYNILFEFLVKGRKLWEASGLFNEMV 375
            T N L    +K  +  +A  +   M+
Sbjct: 611 PTCNSLLSAFLKINRFQDAYSVLQNML 637



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 113/289 (39%), Gaps = 14/289 (4%)

Query: 89  RWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSM---KKENVLSLATFASVFSSY 145
           RW   Q  +  +P  +       G      A+   IKS     + N+ SL +  SV   Y
Sbjct: 255 RWDEVQTQNLSAPAMYT------GSGHKSQALAGTIKSHGGGPQSNLRSLKSLRSVEQYY 308

Query: 146 VVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDND 205
               ++K    T  V++   CK D F  N +L  +      +  +Q+L+   G  K D  
Sbjct: 309 HTLQQMKWVPMTGHVLDNLHCKIDAFQANQVLKLLHDHTIALGFFQWLKRQPG-FKHDGH 367

Query: 206 TYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSL 265
           +Y  ++    + R     +K   EM   V   P  V  Y+  +I      + + E V   
Sbjct: 368 SYTTMIGILGQARQFGTMRKLLDEMN-SVHCKP-TVVTYNR-IIHAYGRANYLREAVKVF 424

Query: 266 KRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCY 325
           + M + G  P    +    +    G  L  A  ++  M   +G  PDT  Y+ M++    
Sbjct: 425 EEMQKAGYEPDRVTYCTLIDIHAKGGYLEVAMDLYTRMQ-EVGLSPDTFTYSAMVNCLGK 483

Query: 326 SNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
                AA KL  EMV NG  P++ TYNI+     K R       L+ +M
Sbjct: 484 GGHLAAAYKLFCEMVENGCTPNLVTYNIMIALQAKARNYENVVKLYKDM 532



 Score = 44.7 bits (104), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 33/69 (47%)

Query: 308 GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEA 367
           GF+ D H Y  MI +   + + G   KLLDEM      P + TYN +     +   L EA
Sbjct: 361 GFKHDGHSYTTMIGILGQARQFGTMRKLLDEMNSVHCKPTVVTYNRIIHAYGRANYLREA 420

Query: 368 SGLFNEMVK 376
             +F EM K
Sbjct: 421 VKVFEEMQK 429



 Score = 41.6 bits (96), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 66/170 (38%), Gaps = 4/170 (2%)

Query: 310 RPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASG 369
           +P    YN +I  Y  +N    A+K+ +EM   G  PD  TY  L +   KG  L  A  
Sbjct: 398 KPTVVTYNRIIHAYGRANYLREAVKVFEEMQKAGYEPDRVTYCTLIDIHAKGGYLEVAMD 457

Query: 370 LFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLC 429
           L+  M +     +     A V           A K +  M+EN C+    T N+++A   
Sbjct: 458 LYTRMQEVGLSPDTFTYSAMVNCLGKGGHLAAAYKLFCEMVENGCTPNLVTYNIMIALQA 517

Query: 430 DMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKA----RKEAVYEEL 475
                   VK  K M   G +      S + ++L         EAV+ E+
Sbjct: 518 KARNYENVVKLYKDMQVAGFRPDKITYSIVMEVLGHCGHLDEAEAVFIEM 567


>gi|451798815|gb|AGF69111.1| PPR [Raphanus sativus]
          Length = 479

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 82/328 (25%), Positives = 135/328 (41%), Gaps = 54/328 (16%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           +L TF ++     V DRV +A+  F  M    CK +V    +L++ +CR+G+ ++A   L
Sbjct: 49  TLVTFNTLLHGLCVEDRVSEALDLFHQM----CKPNVVTFTTLMNGLCREGRVVEAVALL 104

Query: 194 -RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
            R+V+  ++P+  TY  +++G  K  D  +A     +M       PD V  Y + +  L 
Sbjct: 105 DRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEELSHIKPD-VVIYSAIIDGLW 163

Query: 253 KGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD 312
           K  DG +    +L   M+                                     G  PD
Sbjct: 164 K--DGRHTDAQNLFIEMQDK-----------------------------------GIFPD 186

Query: 313 THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFN 372
              Y+ MI+ +C S +   A +LL EM+     PD+ T++ L   LVK   L  A  L  
Sbjct: 187 IVTYSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQ 246

Query: 373 EMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIE-----------NHCSDLSETG 421
           EM+ +    N   C   +    DS     A++ +K M +           N      +T 
Sbjct: 247 EMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTY 306

Query: 422 NLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
           N+L++GL +     EA +  + M  +GI
Sbjct: 307 NILISGLINEGKFLEAEELYEEMPHRGI 334



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 82/341 (24%), Positives = 139/341 (40%), Gaps = 20/341 (5%)

Query: 122 DAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAIC 181
           D    M K NV+   TF ++ +      RV +A+   D M + G + +     +++  +C
Sbjct: 71  DLFHQMCKPNVV---TFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMC 127

Query: 182 RDGKTIDAWQFLRVVD--GRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPD 239
           + G T+ A   LR ++    IKPD   Y+ +++G  K+    +A+  F EM  + G  PD
Sbjct: 128 KMGDTVSALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQ-DKGIFPD 186

Query: 240 NVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFI 299
            V    S +I          E    L+ M+ R  +P +  F       +   +L  A+ +
Sbjct: 187 IVTY--SCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDL 244

Query: 300 WGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEM-----------VYNGAFPDI 348
              M+   G  P+    N ++   C S +   A+++   M            +NG  PD+
Sbjct: 245 LQEMISS-GVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDV 303

Query: 349 QTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKY 408
           QTYNIL   L+   K  EA  L+ EM     V +     + +           A + +  
Sbjct: 304 QTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMFDS 363

Query: 409 MIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
           M     S    T N L+ G C   M+ + ++    M  +GI
Sbjct: 364 MGSKSFSPNIVTFNTLITGYCKAGMVDDGLELFCEMGRRGI 404



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 69/278 (24%), Positives = 115/278 (41%), Gaps = 22/278 (7%)

Query: 150 RVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYA 208
           R  DA   F  M+  G   D+   + +++  C  GK  +A + L+ ++  +I PD  T++
Sbjct: 167 RHTDAQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFS 226

Query: 209 ILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG-CDG-----IYETV 262
            L+    KE D+ +A+    EM I  G  P+ V        TLL G CD        E  
Sbjct: 227 GLINALVKEGDLNSAQDLLQEM-ISSGVCPNVVTCN-----TLLDGLCDSGKLKDALEMF 280

Query: 263 NSL-KRMME-------RGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTH 314
            ++ K MM+        G  P +  + +     +       AE ++  M  R G  PDT 
Sbjct: 281 KAMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHR-GIVPDTV 339

Query: 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
            Y+ MI+  C  +    A ++ D M      P+I T+N L     K   + +   LF EM
Sbjct: 340 TYSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDGLELFCEM 399

Query: 375 VKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIEN 412
            +   V N       +R +    +   ++  ++ MI +
Sbjct: 400 GRRGIVANAITYITLIRGFRKVGNINGSLDIFQEMISS 437



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 59/253 (23%), Positives = 96/253 (37%), Gaps = 18/253 (7%)

Query: 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR 194
           + TF+ + ++ V    +  A      M   G   +V   N+LL  +C  GK  DA +  +
Sbjct: 222 VVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFK 281

Query: 195 VVD------------GRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVP 242
            +               ++PD  TY IL+ G   E     A++ + EM    G  PD V 
Sbjct: 282 AMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMP-HRGIVPDTV- 339

Query: 243 AYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWG 301
            Y S +  L K    + E       M  +  +P + TF  L    C  G    G E    
Sbjct: 340 TYSSMINGLCKQ-SRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDGLELF-- 396

Query: 302 AMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKG 361
             +GR G   +   Y  +I  +        ++ +  EM+ +G +PD  T   +   L   
Sbjct: 397 CEMGRRGIVANAITYITLIRGFRKVGNINGSLDIFQEMISSGVYPDTITIRNMLTGLWSK 456

Query: 362 RKLWEASGLFNEM 374
            +L  A  +  E+
Sbjct: 457 EELKRALAMLEEL 469


>gi|242067351|ref|XP_002448952.1| hypothetical protein SORBIDRAFT_05g002320 [Sorghum bicolor]
 gi|241934795|gb|EES07940.1| hypothetical protein SORBIDRAFT_05g002320 [Sorghum bicolor]
          Length = 455

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 80/342 (23%), Positives = 149/342 (43%), Gaps = 57/342 (16%)

Query: 138 FASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDA-WQFLRVV 196
           F   FS+Y     +  A+  F+ M Q+G   D  +  +L+ A+C+ G+  DA  +F +++
Sbjct: 33  FNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPDAVSYGALIDALCKLGRVDDAEVKFNQMI 92

Query: 197 DGRIKPDNDTYAILLEG------WEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLIT 250
           +  + P+   ++ L+ G      WEK       ++ F EM + VG  P N+  +++ L  
Sbjct: 93  NEGVTPNIVVFSSLVYGLCSIDKWEK------VEELFFEM-LNVGIHP-NIVFFNTILCN 144

Query: 251 LLKGCDG-IYETVNSLKRMMERGCNPG-MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIG 308
           L K  +G + E    +  +   G  P  +++  L    CL G     ++ + G +   +G
Sbjct: 145 LCK--EGRVMEGQRLVDSIECMGVRPDVISYNTLIDGHCLAGTIDEASKLLEGMV--SVG 200

Query: 309 FRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEAS 368
            +P++  YN ++  YC +    +A  L  +M+ NG  P + TYN +   L + ++  EA 
Sbjct: 201 LKPNSFSYNTLLHGYCKAGRIDSAYSLFRKMLSNGITPGVVTYNTILHGLFQTKRFSEAK 260

Query: 369 GLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGL 428
            L+  M+ +                          K+  Y           T N ++ GL
Sbjct: 261 ELYLNMINS------------------------GTKWGIY-----------TYNTILNGL 285

Query: 429 CDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIK-ARKE 469
           C  + + EA K  + +  KG+Q+     + +   L+K  RKE
Sbjct: 286 CKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGRKE 327



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 70/295 (23%), Positives = 122/295 (41%), Gaps = 15/295 (5%)

Query: 138 FASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VV 196
           F ++  +     RV +     D +E  G + DV + N+L+   C  G   +A + L  +V
Sbjct: 138 FNTILCNLCKEGRVMEGQRLVDSIECMGVRPDVISYNTLIDGHCLAGTIDEASKLLEGMV 197

Query: 197 DGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD 256
              +KP++ +Y  LL G+ K   + +A   F +M +  G  P  V  Y++ L        
Sbjct: 198 SVGLKPNSFSYNTLLHGYCKAGRIDSAYSLFRKM-LSNGITP-GVVTYNTIL-------H 248

Query: 257 GIYET--VNSLKRMMERGCNPGMTFFKLAFEECLTG---QNLRGAEFIWGAMVGRIGFRP 311
           G+++T   +  K +     N G  +    +   L G    N     F     +   G + 
Sbjct: 249 GLFQTKRFSEAKELYLNMINSGTKWGIYTYNTILNGLCKSNCVDEAFKMFQSLCSKGLQL 308

Query: 312 DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLF 371
           +   + +MI           AM L   +  NG  PD+ TY ++ E L++   L E   LF
Sbjct: 309 NIITFTIMIGALLKGGRKEDAMDLFAAIPANGLVPDVVTYRVVAENLIEEGSLEEFDSLF 368

Query: 372 NEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVA 426
           + M KN    N +   A VR  +   D   A  +   + E + S  + T ++L++
Sbjct: 369 SAMEKNGTAPNSQMLNALVRRLLHRGDISRAGAYLSKLDERNFSVEASTTSMLIS 423



 Score = 40.8 bits (94), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 1/73 (1%)

Query: 308 GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEA 367
           G  P+ H++N+  S Y        AM + ++M  +G  PD  +Y  L + L K  ++ +A
Sbjct: 25  GISPNHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPDAVSYGALIDALCKLGRVDDA 84

Query: 368 SGLFNEMVKNENV 380
              FN+M+ NE V
Sbjct: 85  EVKFNQMI-NEGV 96


>gi|296083865|emb|CBI24253.3| unnamed protein product [Vitis vinifera]
          Length = 582

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 91/350 (26%), Positives = 153/350 (43%), Gaps = 45/350 (12%)

Query: 104 WNLVVDLLGKNC-LFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVM 161
            N+V+  L +N  +F+AM   I+ M +++V   + ++ ++ +    A ++K+A+     M
Sbjct: 1   MNIVLKGLCRNGGVFEAMG-LIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEM 59

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDV 220
           E  GC  +     +L+  +C+DG+  +A + L  +  +    D   Y  L+ G+    ++
Sbjct: 60  EAAGCFPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNL 119

Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNS-LKRMMERGCNPGM-T 278
              K+ F EM+ +      NV  Y   +  L +   G ++  N+ L  M E G +P + T
Sbjct: 120 DRGKELFDEMLGK--GISANVVTYSCLVHGLCR--LGQWKEANTVLNAMAEHGIHPDVVT 175

Query: 279 FFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDE 338
           +  L    C  G+     + +   MV + G  P    YN+++S  C       A K+L  
Sbjct: 176 YTGLIDGLCKDGRATHAMDLL-NLMVEK-GEEPSNVTYNVLLSGLCKEGLVIDAFKILRM 233

Query: 339 MVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDD 398
           M+  G   D+ TYN L + L    K+ EA  LFN M  NEN L                +
Sbjct: 234 MIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCL----------------E 277

Query: 399 PYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448
           P V                  T N+L+ GLC    L +AVK  + M +KG
Sbjct: 278 PNVF-----------------TFNMLIGGLCKEGRLTKAVKIHRKMVKKG 310



 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 113/245 (46%), Gaps = 11/245 (4%)

Query: 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR 194
           + T+  +        R   A+   ++M + G +      N LLS +C++G  IDA++ LR
Sbjct: 173 VVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILR 232

Query: 195 V-VDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLK 253
           + ++   K D  TY  L++G   +  V  A K F  M     +D +N    + +   +L 
Sbjct: 233 MMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSM-----FDNENCLEPNVFTFNMLI 287

Query: 254 G--C-DG-IYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGF 309
           G  C +G + + V   ++M+++G    +  + +    CL    ++ A  +W  ++  +GF
Sbjct: 288 GGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAMELWKQVL-DLGF 346

Query: 310 RPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASG 369
            P++  Y+++I  +C       A  L  EM  +G  P +  YN L   L K   L +A  
Sbjct: 347 VPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLMASLCKEGSLEQAKS 406

Query: 370 LFNEM 374
           LF EM
Sbjct: 407 LFQEM 411



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 71/273 (26%), Positives = 121/273 (44%), Gaps = 15/273 (5%)

Query: 116 LFDAMWDAIKSMKKENVL--SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFAL 173
           LF++M+D       EN L  ++ TF  +        R+  A+     M + G   ++   
Sbjct: 265 LFNSMFD------NENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTY 318

Query: 174 NSLLSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVI 232
           N LL    + GK  +A +  + V+D    P++ TY+IL++G+ K R +  AK  F EM  
Sbjct: 319 NMLLGGCLKAGKIKEAMELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRT 378

Query: 233 EVGWDPDNVPAYDSYLITLLKGCDGIYETVNSL-KRMMERGCNPGMTFFKLAFEECLTGQ 291
             G +P  +  Y++ + +L K  +G  E   SL + M    C P +  F    +  L   
Sbjct: 379 H-GLNPA-LFDYNTLMASLCK--EGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLKAG 434

Query: 292 NLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTY 351
           + +  + +   MV  +G RPD   ++ +I+      E   A   L+ MV +G  PD   Y
Sbjct: 435 DFQFVKELQMKMV-EMGLRPDALTFSTLINRLSKLGELDEAKSALERMVASGFTPDALVY 493

Query: 352 NILFEFLVKGRKLWEASGLFNEMVKNENVLNHE 384
           + L + L       E   L ++M     VL+ +
Sbjct: 494 DSLLKGLSSKGDTTEIINLLHQMAAKGTVLDRK 526


>gi|297838419|ref|XP_002887091.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297332932|gb|EFH63350.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 568

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 80/327 (24%), Positives = 135/327 (41%), Gaps = 45/327 (13%)

Query: 87  FFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSY 145
           FF    + L    + + + +++  L KN +    ++  + M+++ V  +L T+  V + +
Sbjct: 221 FFEMGKFGL--VANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEDGVFPNLYTYNCVMNQH 278

Query: 146 VVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRD---------------------- 183
               R KDA   FD M + G   ++   N+L+  +CR+                      
Sbjct: 279 CKDGRTKDAFKLFDEMRERGVSCNIVTYNTLIGGLCREMKANEANKVMDQMKSDGINPNL 338

Query: 184 -------------GKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGE 229
                        GK   A    R +  R + P   TY IL+ G+ K+ D + A K   E
Sbjct: 339 ITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKVVKE 398

Query: 230 MVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGM-TFFKLAFEECL 288
           M  E G  P  +    + LI      D + + +     M E G  P + T+  L    C+
Sbjct: 399 ME-ERGIKPSKITY--TILIDTFARMDNMEKAIQLRSPMEELGLTPDVHTYSVLIHGFCI 455

Query: 289 TGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDI 348
            GQ +  A  ++  MV +    P+  +YN M+  YC    +  A++L  EM      P++
Sbjct: 456 KGQ-MNEASRLFKLMVAK-KLEPNKVIYNTMVLGYCKEGSSYRALRLFREMEEKELPPNV 513

Query: 349 QTYNILFEFLVKGRKLWEASGLFNEMV 375
            +Y  + E L K RK  EA GL  +M+
Sbjct: 514 ASYRYMIEVLCKERKSKEAEGLVEKMI 540



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 70/300 (23%), Positives = 130/300 (43%), Gaps = 7/300 (2%)

Query: 152 KDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAIL 210
           K     ++ M++ G   +++  N +++  C+DG+T DA++    +  R +  +  TY  L
Sbjct: 250 KQGFEMYEKMQEDGVFPNLYTYNCVMNQHCKDGRTKDAFKLFDEMRERGVSCNIVTYNTL 309

Query: 211 LEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMME 270
           + G  +E     A K   +M  + G +P N+  Y++ LI    G   + + ++  + +  
Sbjct: 310 IGGLCREMKANEANKVMDQMKSD-GINP-NLITYNT-LIDGFCGVGKLGKALSLCRDLKS 366

Query: 271 RGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETG 330
           RG +P +  + +         +  GA  +   M  R G +P    Y ++I  +   +   
Sbjct: 367 RGLSPSLVTYNILVSGFCKKGDTSGAGKVVKEMEER-GIKPSKITYTILIDTFARMDNME 425

Query: 331 AAMKLLDEMVYNGAFPDIQTYNILFE-FLVKGRKLWEASGLFNEMVKNENVLNHENCRAA 389
            A++L   M   G  PD+ TY++L   F +KG+ + EAS LF  MV  +   N       
Sbjct: 426 KAIQLRSPMEELGLTPDVHTYSVLIHGFCIKGQ-MNEASRLFKLMVAKKLEPNKVIYNTM 484

Query: 390 VRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
           V  Y      Y A++ ++ M E        +   ++  LC      EA    + M + GI
Sbjct: 485 VLGYCKEGSSYRALRLFREMEEKELPPNVASYRYMIEVLCKERKSKEAEGLVEKMIDTGI 544



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 80/329 (24%), Positives = 137/329 (41%), Gaps = 36/329 (10%)

Query: 138 FASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVD 197
           +  + ++YV +  +  +I+ F+ M   G        N+LL+ +         W+F    +
Sbjct: 97  YEVMINAYVQSQSLDSSISYFNEMVDKGFVPGSNCFNNLLTFVVGSSSFNQWWRFFN--E 154

Query: 198 GRIKPDNDTYA--ILLEGWEKERDVANAKKTFGEMV--IEVGWDPDNVPAYDSYLITLLK 253
            +IK D D Y+  I+++G  +  ++   +K+F  +V   E G+ P NV  Y     TL+ 
Sbjct: 155 SKIKVDLDVYSFGIVIKGCCEAGEI---EKSFDLLVELREFGFSP-NVVIY----TTLID 206

Query: 254 GCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTG---QNLRGAEFIWGAMVGRIGFR 310
           GC    E   +     E G   G+   +  +   + G     ++   F     +   G  
Sbjct: 207 GCCKRGEIEKAKDLFFEMG-KFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEDGVF 265

Query: 311 PDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGL 370
           P+ + YN +++ +C    T  A KL DEM   G   +I TYN L   L +  K  EA+ +
Sbjct: 266 PNLYTYNCVMNQHCKDGRTKDAFKLFDEMRERGVSCNIVTYNTLIGGLCREMKANEANKV 325

Query: 371 FNEMVKNENVLNHENCRAAVRVYMDSDDPYVAI-KFWKYMIENHCSDLSETG-------- 421
            ++M         +     +  Y    D +  + K  K +  + C DL   G        
Sbjct: 326 MDQM-------KSDGINPNLITYNTLIDGFCGVGKLGKAL--SLCRDLKSRGLSPSLVTY 376

Query: 422 NLLVAGLCDMHMLPEAVKYAKGMAEKGIQ 450
           N+LV+G C       A K  K M E+GI+
Sbjct: 377 NILVSGFCKKGDTSGAGKVVKEMEERGIK 405


>gi|298204688|emb|CBI25186.3| unnamed protein product [Vitis vinifera]
          Length = 548

 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 92/371 (24%), Positives = 151/371 (40%), Gaps = 35/371 (9%)

Query: 105 NLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQY 164
            LV+ +LG    F   W  I+ + + +V +      +   Y  A+    AI TF +ME++
Sbjct: 147 GLVIWILGNCKKFGVAWCLIRELHRSSVDTRRAMLIMIDRYTAANDPCKAIKTFHIMEKF 206

Query: 165 GCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEK-ERDVANA 223
               D  A  +LL+A+C+ G   DA + +         + + + I+L GW     D+  A
Sbjct: 207 RLSPDQEAFYTLLTALCKHGNVEDAEELMFQNKKLFPLETEGFNIILNGWSNVSLDIFEA 266

Query: 224 KKTFGEMVIEVGWDPDNVPAYDSY--LITLLKGCDGIYETVNSLKRMMERGCNPGMTFFK 281
           K+ + EM          VP   +Y  +I+       +++++     M +RG  PG+  + 
Sbjct: 267 KRIWREMS-----KCCIVPNATTYTLMISCFSKFGNLFDSLRLFDDMKKRGWIPGLEVYN 321

Query: 282 -----LAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLL 336
                L  E CLT      A  I G  +  +G + D+  YN MI   C + +   A  +L
Sbjct: 322 SLIYVLTHENCLT-----EALKILGK-IKEMGLQLDSASYNCMIRPLCKAKKLEEARTIL 375

Query: 337 DEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDS 396
             M+     P  +TY+   E    G    E      E++KN              + +D+
Sbjct: 376 AAMIGENLGPTTETYHAFLE----GASYEETF----EVLKNLRTAGFGPNGDTFLLILDN 427

Query: 397 ----DDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVT 452
               D P  A+K W  M +      SE   +L+ GL     L +A +    M  KG    
Sbjct: 428 LFKLDQPENALKIWVEMKQFDVVPGSEHYKVLIEGLTKFGWLVKARELYAEMRSKGFLDD 487

Query: 453 PFALSKLKQIL 463
           P    KLK++L
Sbjct: 488 P----KLKKLL 494


>gi|356547408|ref|XP_003542104.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g16010-like [Glycine max]
          Length = 631

 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 100/438 (22%), Positives = 177/438 (40%), Gaps = 52/438 (11%)

Query: 51  SPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDL 110
            P  E  L+   ++V    V ++LK         ++FF+W+  + N +H    +  ++  
Sbjct: 69  GPDAEKALEVLKLKVDPRLVREILKIDV-EVSVKIQFFKWAGKRRNFEHDSTTYMALIRC 127

Query: 111 LGKNCLFDAMWDAIKSMKKEN-VLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHD 169
           L ++ +F  +W  I+ M K +  ++ A  + +      A  V  A++ F  ++   C+  
Sbjct: 128 LDEHRMFGEVWKTIQDMVKGSCAMAPAELSEIVRILGKAKMVNRALSVFYQVKGRKCRPT 187

Query: 170 VFALNSLLSAICRDGKTIDAWQFLRVVDGRIK--PDNDTYAILLEGWEKERDVANAKKTF 227
               NS++  + ++G      +    +   +   PD  TY+ L+  + K     +A + F
Sbjct: 188 ASTYNSIILMLMQEGHHEKVHELYNEMCSEVHCFPDTVTYSALISAFAKLNRDDSAIRLF 247

Query: 228 GEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEEC 287
            EM  E G  P     Y + +    K    + E +  +K M  R C   +T F   + E 
Sbjct: 248 DEMK-ENGLQP-TAKIYTTLMGIYFK-VGKVEEALGLVKEMRARRC--LLTVF--TYTEL 300

Query: 288 LTGQNLRG----AEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNG 343
           + G    G    A   +  M+ + G +PD  + N +I++   SN    A+KL DEM    
Sbjct: 301 IRGLGKSGRVEDAYMTYKNML-KDGCKPDVVLMNNLINILGRSNHLRDAIKLFDEMKLLN 359

Query: 344 AFPDIQTYNILFEFLVKGRK-LWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVA 402
             P++ TYN + + L + +  L EAS  F  M K                     D  V 
Sbjct: 360 CAPNVVTYNTIIKSLFEAKAPLSEASSWFERMKK---------------------DGIVP 398

Query: 403 IKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQI 462
             F              T ++L+ G C  + + +A+   + M EKG    P A   L   
Sbjct: 399 SSF--------------TYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINT 444

Query: 463 LIKARKEAVYEELLKKCK 480
           L  A++  V  EL ++ K
Sbjct: 445 LGVAKRYDVANELFQELK 462



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 68/313 (21%), Positives = 125/313 (39%), Gaps = 4/313 (1%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           T++++ S++   +R   AI  FD M++ G +       +L+    + GK  +A   ++ +
Sbjct: 226 TYSALISAFAKLNRDDSAIRLFDEMKENGLQPTAKIYTTLMGIYFKVGKVEEALGLVKEM 285

Query: 197 DGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
             R       TY  L+ G  K   V +A  T+  M+ + G  PD V   +  LI +L   
Sbjct: 286 RARRCLLTVFTYTELIRGLGKSGRVEDAYMTYKNMLKD-GCKPDVVLMNN--LINILGRS 342

Query: 256 DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHM 315
           + + + +     M    C P +  +    +     +        W   + + G  P +  
Sbjct: 343 NHLRDAIKLFDEMKLLNCAPNVVTYNTIIKSLFEAKAPLSEASSWFERMKKDGIVPSSFT 402

Query: 316 YNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
           Y+++I  YC +N    A+ LL+EM   G  P    Y  L   L   ++   A+ LF E+ 
Sbjct: 403 YSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINTLGVAKRYDVANELFQELK 462

Query: 376 KNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLP 435
           +N    +       ++ +        AI  +  M +  C+      N L+ G+     + 
Sbjct: 463 ENCGCSSARVYAVMIKHFGKCGRLNEAINLFNEMKKLGCTPDVYAYNALMTGMVRAERMD 522

Query: 436 EAVKYAKGMAEKG 448
           EA    + M E G
Sbjct: 523 EAFSLFRTMEENG 535



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 74/299 (24%), Positives = 123/299 (41%), Gaps = 51/299 (17%)

Query: 124 IKSMK-KENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICR 182
           +K M+ +  +L++ T+  +      + RV+DA  T+  M + GCK DV  +N+L++ + R
Sbjct: 282 VKEMRARRCLLTVFTYTELIRGLGKSGRVEDAYMTYKNMLKDGCKPDVVLMNNLINILGR 341

Query: 183 DGKTIDAWQ-------------------------------------FLRVVDGRIKPDND 205
                DA +                                     F R+    I P + 
Sbjct: 342 SNHLRDAIKLFDEMKLLNCAPNVVTYNTIIKSLFEAKAPLSEASSWFERMKKDGIVPSSF 401

Query: 206 TYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSL 265
           TY+IL++G+ K   V  A     EM  E G+ P   PA    LI  L G    Y+  N L
Sbjct: 402 TYSILIDGYCKTNRVEKALLLLEEMD-EKGFPP--CPAAYCSLINTL-GVAKRYDVANEL 457

Query: 266 KRMMER--GCNPGMTFFKLA--FEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMIS 321
            + ++   GC+    +  +   F +C     L  A  ++  M  ++G  PD + YN +++
Sbjct: 458 FQELKENCGCSSARVYAVMIKHFGKC---GRLNEAINLFNEM-KKLGCTPDVYAYNALMT 513

Query: 322 LYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENV 380
               +     A  L   M  NG  PDI ++NI+   L +      A  +F +M KN  +
Sbjct: 514 GMVRAERMDEAFSLFRTMEENGCTPDINSHNIILNGLARTGGPKGALEMFTKM-KNSTI 571



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 83/171 (48%), Gaps = 6/171 (3%)

Query: 101 PYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLA-TFASVFSSYVVADRVKDAITTFD 159
           P A+  +++ LG    +D   +  + +K+    S A  +A +   +    R+ +AI  F+
Sbjct: 435 PAAYCSLINTLGVAKRYDVANELFQELKENCGCSSARVYAVMIKHFGKCGRLNEAINLFN 494

Query: 160 VMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV-DGRIKPDNDTYAILLEGWEKER 218
            M++ GC  DV+A N+L++ + R  +  +A+   R + +    PD +++ I+L G  +  
Sbjct: 495 EMKKLGCTPDVYAYNALMTGMVRAERMDEAFSLFRTMEENGCTPDINSHNIILNGLARTG 554

Query: 219 DVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMM 269
               A + F +M       PD V ++++ L  L +   G++E    L + M
Sbjct: 555 GPKGALEMFTKMK-NSTIKPD-VVSFNTILGCLSRA--GLFEEAAKLMQEM 601


>gi|359475966|ref|XP_002279628.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g63330-like [Vitis vinifera]
          Length = 563

 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 115/490 (23%), Positives = 200/490 (40%), Gaps = 82/490 (16%)

Query: 14  SPDPHNKRKR-------STFASHLDVPNLPPTIKTLCEIIAN------TP-SPTVEDVLD 59
           SP P +   R       S  ASH  +  L  T  ++   +        TP SPT    L 
Sbjct: 49  SPSPPSMAARTLANTHASPLASH--IAQLLSTASSITSFLQTLNPQNPTPNSPTSISPLS 106

Query: 60  KTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLND----KHSPYAWNLVVDLLGKNC 115
           +    ++   V QV+K S  +P  A+ FF W++    +     HS   +  + DLL  + 
Sbjct: 107 QFAPFLNPSLVIQVIK-SQKNPYHALFFFNWASNPNPNPNNYSHSHLCYVAITDLLISHG 165

Query: 116 LFDAMWDAIKSMKKENVLSLATFASVFSSYVVADR--VKDAITTFDVMEQYGCKHDVFAL 173
           LF      ++S  + +  + A F   +      DR  ++ AI  F   ++      +F+ 
Sbjct: 166 LFSTASSLLQSHHRLSDFAAAKFVKAY-----GDRGDIRGAIHWFHRAKKMESGRCLFSY 220

Query: 174 NSLLSAICRDGKTIDAWQ-FLRVV-DGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMV 231
           N++L    +  + + A   F ++V +G +KPD  TY  ++ G+ K   + NAK  F EM 
Sbjct: 221 NAILGVFVKANRIMLARAVFDQIVKEGVVKPDVSTYTTIIRGYCKMGMIENAKNVFDEM- 279

Query: 232 IEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGM-----TFFKLAFEE 286
                                 GC      V+  KRMM R    G+     T   +    
Sbjct: 280 ----------------------GCKPNLGNVDEAKRMMTRMRLNGLKDNVATHTSILKGL 317

Query: 287 CLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFP 346
           C+ G+ L  A      MVG +G   D   Y ++++ YC   +   A+ LL EM   G  P
Sbjct: 318 CVVGK-LDDAARHLKEMVG-LGMEADAKAYGVVVNEYCKIGKADDAISLLKEMKSRGINP 375

Query: 347 DIQTYNILFEFLVKGRKLWEASGLFNEMVK---NENVLNHEN-----CRAAVRVY----- 393
            + ++N +F  LV+  K  +A  +  +M +     N L++       C+A  R++     
Sbjct: 376 SVSSFNAVFRILVESGKTDKAGLILRQMKQLGCTPNFLSYSTVIDGLCKAKGRMHEVEEF 435

Query: 394 ---MDSDDPYVAIKFWKYMIENHCSDL-SETGNLLVAGLCDMHM---LPEAVKYAKGMA- 445
              M  +  ++    + ++++ +C D  ++    L   + DM     L   + + KG++ 
Sbjct: 436 VDDMCRNGHHLDASMYSWLVKGYCEDGNADMAMRLFCEMLDMGYVINLESFLAFVKGLSA 495

Query: 446 -EKGIQVTPF 454
            EK  +V  F
Sbjct: 496 KEKAFEVEKF 505



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 65/302 (21%), Positives = 123/302 (40%), Gaps = 35/302 (11%)

Query: 102 YAWNLVVDLLGKN---CLFDAMWDAIKSMKKENVLS--LATFASVFSSYVVADRVKDAIT 156
           +++N ++ +  K     L  A++D I    KE V+   ++T+ ++   Y     +++A  
Sbjct: 218 FSYNAILGVFVKANRIMLARAVFDQIV---KEGVVKPDVSTYTTIIRGYCKMGMIENAKN 274

Query: 157 TFD-------------------VMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVD 197
            FD                    M   G K +V    S+L  +C  GK  DA + L+ + 
Sbjct: 275 VFDEMGCKPNLGNVDEAKRMMTRMRLNGLKDNVATHTSILKGLCVVGKLDDAARHLKEMV 334

Query: 198 G-RIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD 256
           G  ++ D   Y +++  + K     +A     EM    G +P +V ++++    L++   
Sbjct: 335 GLGMEADAKAYGVVVNEYCKIGKADDAISLLKEMKSR-GINP-SVSSFNAVFRILVE--S 390

Query: 257 GIYETVNSLKRMMER-GCNPGMTFFKLAFEE-CLTGQNLRGAEFIWGAMVGRIGFRPDTH 314
           G  +    + R M++ GC P    +    +  C     +   E     M  R G   D  
Sbjct: 391 GKTDKAGLILRQMKQLGCTPNFLSYSTVIDGLCKAKGRMHEVEEFVDDMC-RNGHHLDAS 449

Query: 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
           MY+ ++  YC       AM+L  EM+  G   +++++    + L    K +E    F EM
Sbjct: 450 MYSWLVKGYCEDGNADMAMRLFCEMLDMGYVINLESFLAFVKGLSAKEKAFEVEKFFEEM 509

Query: 375 VK 376
            +
Sbjct: 510 SR 511


>gi|302760809|ref|XP_002963827.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
 gi|300169095|gb|EFJ35698.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
          Length = 616

 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 92/395 (23%), Positives = 160/395 (40%), Gaps = 31/395 (7%)

Query: 79  SHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLAT 137
           S P  A++FF W+  Q   KH  +++N ++D+L K+          K +       +L T
Sbjct: 5   SRPDLAIQFFDWAGEQDGYKHDVHSYNHLLDILVKSGHHFRTGKVYKDLLHSGCSPNLVT 64

Query: 138 FASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVV 196
           F  +      A +   A+     ++++    DV+  N L+  + +DG    A + F  + 
Sbjct: 65  FKILIRGNCKAGQAMRALEFLRALDEFSVAPDVYIFNVLIHGLFKDGNPDQAVKLFENME 124

Query: 197 DGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD 256
             R+KP+  TY  ++ G  K  ++  A++   EM+ + G    ++  Y++ LI       
Sbjct: 125 SSRVKPEIVTYNTVISGLCKSGNLEKARELLEEMIRKGGKSAPDIVTYNT-LINAFYRAS 183

Query: 257 GIYETVNSLKRMMERGCNPG-MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHM 315
            I E     ++M   G NP  +T   L    C  G      E + G  +   G  PD   
Sbjct: 184 RIREACAFREKMKAAGINPDVLTCNILVSGICKDGDVEEALEILDGMKLA--GPVPDVIT 241

Query: 316 YNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
           YN +I   C + +   A ++L  M      PD+ T+N L +   K   L  A  +  EM 
Sbjct: 242 YNSIIHALCVAGKVVEAAEILKTM---SCSPDLVTFNTLLDGFCKAGMLPRALEVLEEMC 298

Query: 376 KNE--------NVLNHENCRAAVRVYMDSDDPYVAIKFW---KYMIENHCSDLSETGNLL 424
           +           +L +  CR             V + F+   + + + +  D+    + L
Sbjct: 299 RENILPDVITYTILVNGLCRVG----------QVQVAFYLLEEIVRQGYIPDVIAYTS-L 347

Query: 425 VAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKL 459
           V GLC    + EA K  K M+ +G +      S L
Sbjct: 348 VDGLCKSGEIEEAHKLVKEMSVRGCRTGVVMYSSL 382



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 108/485 (22%), Positives = 181/485 (37%), Gaps = 94/485 (19%)

Query: 76  FSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLS- 134
           F   +P  AVK F  +      K     +N V+  L K+   +   + ++ M ++   S 
Sbjct: 108 FKDGNPDQAVKLFE-NMESSRVKPEIVTYNTVISGLCKSGNLEKARELLEEMIRKGGKSA 166

Query: 135 --LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQF 192
             + T+ ++ +++  A R+++A    + M+  G   DV   N L+S IC+DG   +A + 
Sbjct: 167 PDIVTYNTLINAFYRASRIREACAFREKMKAAGINPDVLTCNILVSGICKDGDVEEALEI 226

Query: 193 LR---------------------VVDGRI------------KPDNDTYAILLEGWEKERD 219
           L                       V G++             PD  T+  LL+G+ K   
Sbjct: 227 LDGMKLAGPVPDVITYNSIIHALCVAGKVVEAAEILKTMSCSPDLVTFNTLLDGFCKAGM 286

Query: 220 VANAKKTFGEM----------------------------------VIEVGWDPDNVPAYD 245
           +  A +   EM                                  ++  G+ PD V AY 
Sbjct: 287 LPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPD-VIAYT 345

Query: 246 SYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVG 305
           S +  L K  + I E    +K M  RGC  G+  +           N+  A  I   MV 
Sbjct: 346 SLVDGLCKSGE-IEEAHKLVKEMSVRGCRTGVVMYSSLVSGYCRAGNVHKAREILAEMVS 404

Query: 306 RIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLW 365
            I   P    YN+++           A+ L+ ++V  G  PD+ TYN L + L K  ++ 
Sbjct: 405 -INMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYNTLIDGLCKANRVR 463

Query: 366 EASGLFNEMVKNENVLNHENCRAAV----RVYMDSDDPYVAIKFWKYMIE----NHCSDL 417
           EA  L +EM       N     + V    RV    D        W  ++E     H  ++
Sbjct: 464 EACDLADEMASRGCFPNDVTLGSVVFGLCRVGRVDDA-------WSLVVEMSRKRHAPNV 516

Query: 418 SETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIK----ARKEAVYE 473
               + L+ GLC    + +A      M  +G+ +  FA  KL   +      A   A+Y+
Sbjct: 517 VVYTS-LIDGLCKSDRMDDACMVLDAMRGQGVALDDFAYRKLIVSMSHGGRVAEAMAMYD 575

Query: 474 ELLKK 478
           E++ +
Sbjct: 576 EMVAR 580


>gi|15222491|ref|NP_176550.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
 gi|332195999|gb|AEE34120.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 257

 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 67/250 (26%), Positives = 116/250 (46%), Gaps = 15/250 (6%)

Query: 139 ASVFSSYVVADRV-KD-----AITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQF 192
           A V  S  + DR+ KD     A   F  M + G   +V   N ++ + C  G+  DA Q 
Sbjct: 8   ADVVISTAIVDRLCKDGNHINAQNLFTEMHEKGIFPNVLTYNCMIDSFCHSGRWSDADQL 67

Query: 193 LR-VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWD--PDNVPAYDSYLI 249
           LR +++ +I PD  T++ L+  + KER V+ A++ + EM+    W   P  +  Y+S + 
Sbjct: 68  LRHMIEKQINPDIVTFSALINAFVKERKVSEAEEIYKEML---RWSIFPTTI-TYNSMID 123

Query: 250 TLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGF 309
              K  D + +    L  M  +GC+P +  F          + +     I+  M  R G 
Sbjct: 124 GFCKQ-DRVDDAKRMLDSMASKGCSPDVVTFSTLINGYCKAKRVDNGMEIFCEM-HRRGI 181

Query: 310 RPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASG 369
             +T  Y  +I  +C   +  AA  LL+EM+  G  PD  T++ +   L   ++L +A  
Sbjct: 182 VANTVTYTTLIHGFCQVGDLDAAQDLLNEMISCGVAPDYITFHCMLAGLCSKKELRKAFA 241

Query: 370 LFNEMVKNEN 379
           +  ++ K+E+
Sbjct: 242 ILEDLQKSED 251



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 61/241 (25%), Positives = 99/241 (41%), Gaps = 6/241 (2%)

Query: 198 GRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDG 257
             IK D      +++   K+ +  NA+  F EM  E G  P NV  Y+  + +      G
Sbjct: 4   SHIKADVVISTAIVDRLCKDGNHINAQNLFTEMH-EKGIFP-NVLTYNCMIDSFCHS--G 59

Query: 258 IYETVNSLKR-MMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMY 316
            +   + L R M+E+  NP +  F       +  + +  AE I+  M+ R    P T  Y
Sbjct: 60  RWSDADQLLRHMIEKQINPDIVTFSALINAFVKERKVSEAEEIYKEML-RWSIFPTTITY 118

Query: 317 NMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK 376
           N MI  +C  +    A ++LD M   G  PD+ T++ L     K +++     +F EM +
Sbjct: 119 NSMIDGFCKQDRVDDAKRMLDSMASKGCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHR 178

Query: 377 NENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPE 436
              V N       +  +    D   A      MI    +    T + ++AGLC    L +
Sbjct: 179 RGIVANTVTYTTLIHGFCQVGDLDAAQDLLNEMISCGVAPDYITFHCMLAGLCSKKELRK 238

Query: 437 A 437
           A
Sbjct: 239 A 239



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 61/152 (40%)

Query: 308 GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEA 367
           G  P+   YN MI  +C+S     A +LL  M+     PDI T++ L    VK RK+ EA
Sbjct: 40  GIFPNVLTYNCMIDSFCHSGRWSDADQLLRHMIEKQINPDIVTFSALINAFVKERKVSEA 99

Query: 368 SGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAG 427
             ++ EM++           + +  +   D    A +    M    CS    T + L+ G
Sbjct: 100 EEIYKEMLRWSIFPTTITYNSMIDGFCKQDRVDDAKRMLDSMASKGCSPDVVTFSTLING 159

Query: 428 LCDMHMLPEAVKYAKGMAEKGIQVTPFALSKL 459
            C    +   ++    M  +GI       + L
Sbjct: 160 YCKAKRVDNGMEIFCEMHRRGIVANTVTYTTL 191



 Score = 45.1 bits (105), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 2/106 (1%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           T+ S+   +   DRV DA    D M   GC  DV   ++L++  C+  +  +  +    +
Sbjct: 117 TYNSMIDGFCKQDRVDDAKRMLDSMASKGCSPDVVTFSTLINGYCKAKRVDNGMEIFCEM 176

Query: 197 DGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNV 241
             R I  +  TY  L+ G+ +  D+  A+    EM I  G  PD +
Sbjct: 177 HRRGIVANTVTYTTLIHGFCQVGDLDAAQDLLNEM-ISCGVAPDYI 221



 Score = 41.6 bits (96), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 33/165 (20%), Positives = 63/165 (38%)

Query: 304 VGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRK 363
           +G+   + D  +   ++   C       A  L  EM   G FP++ TYN + +      +
Sbjct: 1   MGQSHIKADVVISTAIVDRLCKDGNHINAQNLFTEMHEKGIFPNVLTYNCMIDSFCHSGR 60

Query: 364 LWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNL 423
             +A  L   M++ +   +     A +  ++       A + +K M+       + T N 
Sbjct: 61  WSDADQLLRHMIEKQINPDIVTFSALINAFVKERKVSEAEEIYKEMLRWSIFPTTITYNS 120

Query: 424 LVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARK 468
           ++ G C    + +A +    MA KG        S L     KA++
Sbjct: 121 MIDGFCKQDRVDDAKRMLDSMASKGCSPDVVTFSTLINGYCKAKR 165



 Score = 40.4 bits (93), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 28/133 (21%), Positives = 61/133 (45%), Gaps = 11/133 (8%)

Query: 109 DLLGKNCLFDAMWDAIKSMKKENVL----------SLATFASVFSSYVVADRVKDAITTF 158
           ++L  NC+ D+   + +    + +L           + TF+++ +++V   +V +A   +
Sbjct: 44  NVLTYNCMIDSFCHSGRWSDADQLLRHMIEKQINPDIVTFSALINAFVKERKVSEAEEIY 103

Query: 159 DVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKE 217
             M ++         NS++   C+  +  DA + L  +  +   PD  T++ L+ G+ K 
Sbjct: 104 KEMLRWSIFPTTITYNSMIDGFCKQDRVDDAKRMLDSMASKGCSPDVVTFSTLINGYCKA 163

Query: 218 RDVANAKKTFGEM 230
           + V N  + F EM
Sbjct: 164 KRVDNGMEIFCEM 176


>gi|224142151|ref|XP_002324422.1| predicted protein [Populus trichocarpa]
 gi|222865856|gb|EEF02987.1| predicted protein [Populus trichocarpa]
          Length = 453

 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 83/370 (22%), Positives = 160/370 (43%), Gaps = 28/370 (7%)

Query: 95  LNDKHSP--YAWNLVVDLLGKNCLFDAMWDAIK-----SMKKENVLSLATFASVFSSYVV 147
           +++ H P    +  +V  L +  LF ++   I       MK +++L    F S+ +++  
Sbjct: 40  MDEGHKPTLITYTTLVAALTRQKLFKSILRLISKVEENGMKPDSIL----FNSIINAFSE 95

Query: 148 ADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV-DGRIKPDNDT 206
           +  +K+A+  F  M++ GCK      N+L+      GKT +A + L  + DG +KP+  T
Sbjct: 96  SGNMKEAMKLFRKMKESGCKPTTSTFNTLIKGYGNAGKTEEALKLLEFLQDGGVKPNQRT 155

Query: 207 YAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVP------AYDSYLITLLKGCDGIYE 260
           Y IL+  W  + ++  A     +MV   G  PD V       AY     T ++  + I E
Sbjct: 156 YNILVRAWCNKENMEEAWNMVYKMVAS-GMQPDAVTYNTLARAYAEKGET-IRAEEMILE 213

Query: 261 TVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMI 320
            +N      ER C+  +  +      C  G  +  + F++   +  +G  P+  ++N +I
Sbjct: 214 MLNRRVTPNERTCSIIVNGY------CKEGNMVDASRFVF--RMKELGVLPNLFVFNSLI 265

Query: 321 SLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENV 380
             +  + +T    ++L  M  NG  PD+ T++ +        ++ +   +FN+MVK E  
Sbjct: 266 KGFLDTMDTEGVDEVLTLMEENGVRPDVVTFSTIMNAWSSAGRMDKCKEIFNDMVKAEIE 325

Query: 381 LNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKY 440
            +        + Y+ + +P  A      M +            +++G C    +  A+K 
Sbjct: 326 PDIHAFSILAKGYVRAGEPEKAESILTSMRKYGVHPNVVICTTVISGWCSAGKMEHAMKV 385

Query: 441 AKGMAEKGIQ 450
            + M E G+ 
Sbjct: 386 YEKMCEIGVS 395



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 43/195 (22%), Positives = 79/195 (40%), Gaps = 1/195 (0%)

Query: 265 LKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYC 324
           + ++ E G  P    F           N++ A  ++  M    G +P T  +N +I  Y 
Sbjct: 71  ISKVEENGMKPDSILFNSIINAFSESGNMKEAMKLFRKM-KESGCKPTTSTFNTLIKGYG 129

Query: 325 YSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHE 384
            + +T  A+KLL+ +   G  P+ +TYNIL         + EA  +  +MV +    +  
Sbjct: 130 NAGKTEEALKLLEFLQDGGVKPNQRTYNILVRAWCNKENMEEAWNMVYKMVASGMQPDAV 189

Query: 385 NCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGM 444
                 R Y +  +   A +    M+    +    T +++V G C    + +A ++   M
Sbjct: 190 TYNTLARAYAEKGETIRAEEMILEMLNRRVTPNERTCSIIVNGYCKEGNMVDASRFVFRM 249

Query: 445 AEKGIQVTPFALSKL 459
            E G+    F  + L
Sbjct: 250 KELGVLPNLFVFNSL 264


>gi|359479583|ref|XP_002275680.2| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Vitis vinifera]
 gi|297735515|emb|CBI17955.3| unnamed protein product [Vitis vinifera]
          Length = 627

 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 95/381 (24%), Positives = 156/381 (40%), Gaps = 24/381 (6%)

Query: 107 VVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVMEQYG 165
           ++D L K+ L D   +    MK   +   +  ++S+        R + A   F+ M   G
Sbjct: 244 IIDSLCKDGLIDKGKELFLEMKGRGISPDVVAYSSIIHGMCHTGRWEGAKGLFNEMVDEG 303

Query: 166 CKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIK-PDNDTYAILLEGWEKERDVANAK 224
              +V   N L+ A+C+ GK  +A   L+++  R + PD  TY  L++G+  E  + +A+
Sbjct: 304 VHPNVVTFNVLIDALCKAGKMEEANHLLKLMIQRGESPDTFTYNTLIDGFCLEGRIDDAR 363

Query: 225 KTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDG--IYETVNSLKRMMERGCNPGMTFFKL 282
             F  M  + G + D V    SY + +   C    + E     + MM +   P +  +  
Sbjct: 364 DLFVSMESK-GIETDAV----SYNVLINGYCKSGRMVEAKKLYREMMCKEIMPTVITYNT 418

Query: 283 AFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYN 342
                     +R A  ++G M       P++  YN+++   C +N    AM+L   +  +
Sbjct: 419 LLTGLFREGKVRDAWNLFGEMKVH-DLTPESCTYNILLDGLCKNNHLSEAMELFHYLENH 477

Query: 343 GAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYM-------D 395
              P IQ +N L + L K RK+  A  LFN        L+HE     V  Y         
Sbjct: 478 DFQPSIQIFNCLIDGLCKARKIEIARELFNR-------LSHEGLEPNVITYTVMIHGLCK 530

Query: 396 SDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFA 455
           S     A   +  M E  C+    T N L+ G C    + + V+  + MAEK        
Sbjct: 531 SGQLENAKDLFLGMEEKGCAPNLVTFNTLMRGFCQNDEMQKVVELLQEMAEKDFSPDAST 590

Query: 456 LSKLKQILIKARKEAVYEELL 476
           +S +  +L K  K   Y  LL
Sbjct: 591 ISIVVDLLSKDEKYREYLHLL 611



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 83/355 (23%), Positives = 143/355 (40%), Gaps = 59/355 (16%)

Query: 114 NCLFDAMWDAIKSMKKENVLSLA----------TFASVFSSYVVADRVKDAITTFDVMEQ 163
           N L DA+  A K  +  ++L L           T+ ++   + +  R+ DA   F  ME 
Sbjct: 312 NVLIDALCKAGKMEEANHLLKLMIQRGESPDTFTYNTLIDGFCLEGRIDDARDLFVSMES 371

Query: 164 YGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYAILLEGWEKERDVAN 222
            G + D  + N L++  C+ G+ ++A +  R ++   I P   TY  LL G  +E  V +
Sbjct: 372 KGIETDAVSYNVLINGYCKSGRMVEAKKLYREMMCKEIMPTVITYNTLLTGLFREGKVRD 431

Query: 223 AKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKL 282
           A   FGEM +      D  P   +Y I L    DG+ +  N L   ME        F  L
Sbjct: 432 AWNLFGEMKVH-----DLTPESCTYNILL----DGLCKN-NHLSEAME-------LFHYL 474

Query: 283 AFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYN 342
              +                      F+P   ++N +I   C + +   A +L + + + 
Sbjct: 475 ENHD----------------------FQPSIQIFNCLIDGLCKARKIEIARELFNRLSHE 512

Query: 343 GAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVA 402
           G  P++ TY ++   L K  +L  A  LF  M +     N       +R +  +D+    
Sbjct: 513 GLEPNVITYTVMIHGLCKSGQLENAKDLFLGMEEKGCAPNLVTFNTLMRGFCQNDEMQKV 572

Query: 403 IKFWKYMIENHCSDLSETGNLLVAGLCD-------MHMLPEAVKYAKGMAEKGIQ 450
           ++  + M E   S  + T +++V  L         +H+LP     A+G   +G +
Sbjct: 573 VELLQEMAEKDFSPDASTISIVVDLLSKDEKYREYLHLLPTFP--AQGQTGRGYE 625



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 87/320 (27%), Positives = 138/320 (43%), Gaps = 44/320 (13%)

Query: 167 KHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVANAKK 225
           K ++    +++ ++C+DG      +    + GR I PD   Y+ ++ G         AK 
Sbjct: 235 KPNLVCYCTIIDSLCKDGLIDKGKELFLEMKGRGISPDVVAYSSIIHGMCHTGRWEGAKG 294

Query: 226 TFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSL-KRMMERGCNP-GMTFFKLA 283
            F EMV E G  P NV  ++  +  L K   G  E  N L K M++RG +P   T+  L 
Sbjct: 295 LFNEMVDE-GVHP-NVVTFNVLIDALCKA--GKMEEANHLLKLMIQRGESPDTFTYNTLI 350

Query: 284 FEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNG 343
              CL G+ +  A  ++ +M  + G   D   YN++I+ YC S     A KL  EM+   
Sbjct: 351 DGFCLEGR-IDDARDLFVSMESK-GIETDAVSYNVLINGYCKSGRMVEAKKLYREMMCKE 408

Query: 344 AFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNE--------NVL-------NHENCRA 388
             P + TYN L   L +  K+ +A  LF EM  ++        N+L       NH +   
Sbjct: 409 IMPTVITYNTLLTGLFREGKVRDAWNLFGEMKVHDLTPESCTYNILLDGLCKNNHLSEAM 468

Query: 389 AVRVYMDSDDPYVAIKFWKYMIENHC------------SDLSETG--------NLLVAGL 428
            +  Y+++ D   +I+ +  +I+  C            + LS  G         +++ GL
Sbjct: 469 ELFHYLENHDFQPSIQIFNCLIDGLCKARKIEIARELFNRLSHEGLEPNVITYTVMIHGL 528

Query: 429 CDMHMLPEAVKYAKGMAEKG 448
           C    L  A     GM EKG
Sbjct: 529 CKSGQLENAKDLFLGMEEKG 548



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 63/260 (24%), Positives = 110/260 (42%), Gaps = 33/260 (12%)

Query: 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR 194
           +++F ++  +     R  D I+ +  M   G   D   LN L++  C     ++   F  
Sbjct: 92  ISSFNTLLGAVAKIKRYFDVISLYKRMSLIGLAPDFITLNILINCYC----NLNKVDFGL 147

Query: 195 VVDGRI-----KPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLI 249
            V G +      P+  T+  L++G      ++ A     +MV  +G+ P NV  Y + L 
Sbjct: 148 AVLGEMLRRGHSPNTVTFTSLVKGLCLGSRISEATGLLRKMV-RMGYRP-NVVTYGTLL- 204

Query: 250 TLLKGCDGIYETVNSL------KRMMERGCNPGMT-------FFKLAFEECLTGQNLRGA 296
                 +G+  T N++      + M+      G+T       +  +    C  G   +G 
Sbjct: 205 ------NGLCMTGNTMLAVKLHEEMLNGNGGFGVTIKPNLVCYCTIIDSLCKDGLIDKGK 258

Query: 297 EFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFE 356
           E     M GR G  PD   Y+ +I   C++     A  L +EMV  G  P++ T+N+L +
Sbjct: 259 ELFL-EMKGR-GISPDVVAYSSIIHGMCHTGRWEGAKGLFNEMVDEGVHPNVVTFNVLID 316

Query: 357 FLVKGRKLWEASGLFNEMVK 376
            L K  K+ EA+ L   M++
Sbjct: 317 ALCKAGKMEEANHLLKLMIQ 336


>gi|15222753|ref|NP_175959.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75140283|sp|Q7X6A5.1|PPR81_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g55630
 gi|30793841|gb|AAP40373.1| unknown protein [Arabidopsis thaliana]
 gi|30794021|gb|AAP40457.1| unknown protein [Arabidopsis thaliana]
 gi|110739296|dbj|BAF01561.1| hypothetical protein [Arabidopsis thaliana]
 gi|332195155|gb|AEE33276.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 477

 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 87/366 (23%), Positives = 151/366 (41%), Gaps = 23/366 (6%)

Query: 21  RKRSTFASHLDVPNLPPTIKTLCEIIANTPSPTVEDVLDKTLIRVSQETVEQVL-----K 75
           RKR   ++ L    +  T++  C      P    +  LD+  + +S   V +VL      
Sbjct: 69  RKRFMESTKLSASRVLDTLQQDC------PGFNTKSALDELNVSISGLLVREVLVGILRT 122

Query: 76  FSYSHPGP----AVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKEN 131
            S+ +       A KFF W   Q N +H+   ++L++ +  +   + AM   I  M K+ 
Sbjct: 123 LSFDNKTRCAKLAYKFFVWCGGQENFRHTANCYHLLMKIFAECGEYKAMCRLIDEMIKDG 182

Query: 132 VLSLA-TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAI--CRDGKTID 188
             + A TF  +  +   A   +D +  F   + +  +    + N++L ++   +  K ID
Sbjct: 183 YPTTACTFNLLICTCGEAGLARDVVEQFIKSKTFNYRPYKHSYNAILHSLLGVKQYKLID 242

Query: 189 AWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYL 248
            W + ++++    PD  TY I++    +        +   EMV + G+ PD +  Y+  L
Sbjct: 243 -WVYEQMLEDGFTPDVLTYNIVMFANFRLGKTDRLYRLLDEMVKD-GFSPD-LYTYNILL 299

Query: 249 ITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIG 308
             L  G +     +N L  M E G  PG+  F    +       L   ++     V ++G
Sbjct: 300 HHLATG-NKPLAALNLLNHMREVGVEPGVIHFTTLIDGLSRAGKLEACKYFMDETV-KVG 357

Query: 309 FRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEAS 368
             PD   Y +MI+ Y    E   A ++  EM   G  P++ TYN +        K  EA 
Sbjct: 358 CTPDVVCYTVMITGYISGGELEKAEEMFKEMTEKGQLPNVFTYNSMIRGFCMAGKFKEAC 417

Query: 369 GLFNEM 374
            L  EM
Sbjct: 418 ALLKEM 423


>gi|302813417|ref|XP_002988394.1| hypothetical protein SELMODRAFT_128001 [Selaginella moellendorffii]
 gi|300143796|gb|EFJ10484.1| hypothetical protein SELMODRAFT_128001 [Selaginella moellendorffii]
          Length = 388

 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 70/280 (25%), Positives = 125/280 (44%), Gaps = 13/280 (4%)

Query: 104 WNLVVDLLGKNCLFDAMWDAIKSMKKENV---LSLATFASVFSSYVVADRVKDAITTFDV 160
           +N ++D+  K   FD+  + ++ M    +   +   T+ +V +S+     V+ A    ++
Sbjct: 49  YNTLIDVFHKLERFDSARELLEQMWDSGIRPGVMAETYNNVIASFCEVCNVRKAKGILEL 108

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDV 220
           M   GCK DV   N+L+S +C+  +  DA Q +R ++    P+  TY  ++ G  + R  
Sbjct: 109 MIDSGCKPDVVTYNTLISGLCKVRRADDALQLMREMEP--APNTITYNTVINGLWRSRKD 166

Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFF 280
             A+    EM I VG  P +V  Y+  +  L +  + + + V+    M ++ C      F
Sbjct: 167 TEAQALLDEM-ISVGC-PFSVSTYNCVIANLCRSRE-MEKAVDVFLYMRKKKCETDEVTF 223

Query: 281 KLAFEECLTGQNLR--GAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDE 338
               +  L  + L   G    W A   R G   D   Y  +++  C       A ++ + 
Sbjct: 224 ATLVDGFLRDKRLEDAGGTLDWMA---RAGIPSDVKSYTKLLNALCDRGSAQKACEIFNL 280

Query: 339 MVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNE 378
           MV  G  P + +YN+L + L K  ++  A  LF EM + E
Sbjct: 281 MVDRGYAPTLVSYNVLLKGLCKALRVEHALVLFREMQERE 320



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 71/340 (20%), Positives = 141/340 (41%), Gaps = 14/340 (4%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           ++  F SV + +  A  +  A+ T  +M + GC  D    N+L+    +  +   A + L
Sbjct: 10  NVVIFNSVVNGFARAGHLDGALGTLRMMRKAGCDPDEVTYNTLIDVFHKLERFDSARELL 69

Query: 194 RVV-DGRIKPD--NDTYAILLEGWEKERDVANAKKTFG--EMVIEVGWDPDNVPAYDSYL 248
             + D  I+P    +TY  ++  +    +V N +K  G  E++I+ G  PD V  Y+   
Sbjct: 70  EQMWDSGIRPGVMAETYNNVIASF---CEVCNVRKAKGILELMIDSGCKPD-VVTYN--- 122

Query: 249 ITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIG 308
            TL+ G   +    ++L+ M E    P    +          +    A+ +   M+  +G
Sbjct: 123 -TLISGLCKVRRADDALQLMREMEPAPNTITYNTVINGLWRSRKDTEAQALLDEMIS-VG 180

Query: 309 FRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEAS 368
                  YN +I+  C S E   A+ +   M       D  T+  L +  ++ ++L +A 
Sbjct: 181 CPFSVSTYNCVIANLCRSREMEKAVDVFLYMRKKKCETDEVTFATLVDGFLRDKRLEDAG 240

Query: 369 GLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGL 428
           G  + M +     + ++    +    D      A + +  M++   +    + N+L+ GL
Sbjct: 241 GTLDWMARAGIPSDVKSYTKLLNALCDRGSAQKACEIFNLMVDRGYAPTLVSYNVLLKGL 300

Query: 429 CDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARK 468
           C    +  A+   + M E+ IQ    + + + + L  AR+
Sbjct: 301 CKALRVEHALVLFREMQEREIQPDVVSYTTVIKGLCAARR 340


>gi|32489931|emb|CAE05523.1| OSJNBa0038P21.16 [Oryza sativa Japonica Group]
 gi|38347491|emb|CAE05839.2| OSJNBa0091C07.1 [Oryza sativa Japonica Group]
          Length = 844

 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 61/244 (25%), Positives = 114/244 (46%), Gaps = 8/244 (3%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAW-QFLRV 195
            F  + ++Y     +  A+  F+ M+  G   D     +++S++CR G+  DA  +F  +
Sbjct: 424 VFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHM 483

Query: 196 VDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
           VD  + P    Y  L++G     ++  AK+   EM +     P  V  + S +  L K  
Sbjct: 484 VDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEM-MNKDIPPPGVKYFSSIINNLCK-- 540

Query: 256 DG-IYETVNSLKRMMERGCNPGMTFFKLAFEE-CLTGQNLRGAEFIWGAMVGRIGFRPDT 313
           +G + E  + +  M++ G  P +  F    E  CL G N+  A  +  AM   IG  P+ 
Sbjct: 541 EGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVG-NMEEAFALLDAM-ASIGIEPNC 598

Query: 314 HMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNE 373
           ++Y  ++  YC +     A+ +  +M++ G  P    Y+I+   L + R+   A  +F+E
Sbjct: 599 YIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLFQARRTTAAKKMFHE 658

Query: 374 MVKN 377
           M+++
Sbjct: 659 MIES 662



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 102/455 (22%), Positives = 182/455 (40%), Gaps = 97/455 (21%)

Query: 81  PGPAVKFF----RWSAYQLNDKHSP---YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL 133
           P  A++ F    RW+      +HSP   + +N+++D   +    D +  AI     +N L
Sbjct: 153 PALAIELFKRMDRWAC----PRHSPPTIHTYNILIDCYRRVHRPD-LGLAIVGRLLKNGL 207

Query: 134 SLATFA-SVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQF 192
               F+ S+   +V    V  A   F  M + G    +   NS++  +C+  +   A   
Sbjct: 208 GPDDFSYSLIYGFVKDGEVDKAHCLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESI 267

Query: 193 L-RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITL 251
           + ++VD  I PD  TY+++++G  K + +  A++   +MV E G  P+++  Y+S    L
Sbjct: 268 VQKMVDSGIAPDLFTYSLIIDGLCKSKAMDKAERVLEQMV-EAGTRPNSI-TYNS----L 321

Query: 252 LKG--CDGIY-ETVNSLKRMMERGCNPGM----TFFKLAFE-------ECL--------- 288
           + G    G++ E+V   K+M   G  P +    +F    F+       +C+         
Sbjct: 322 IHGYSISGMWNESVRVFKQMSSCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGP 381

Query: 289 -----------------TGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGA 331
                            T   L     I+  M+ + G  P+ H++N++I+ Y        
Sbjct: 382 KPDIISYSTMLHGYATATDSCLADVHNIFNLMLTK-GIAPNKHVFNILINAYARCGMMDK 440

Query: 332 AMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK-------------NE 378
           AM + ++M   G  PD  T+  +   L +  +L +A   FN MV               +
Sbjct: 441 AMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQ 500

Query: 379 NVLNHENCRAA---VRVYMDSDDPYVAIKFWKYMIENHCSD------------LSETG-- 421
              NH     A   +   M+ D P   +K++  +I N C +            + +TG  
Sbjct: 501 GCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQR 560

Query: 422 ------NLLVAGLCDMHMLPEAVKYAKGMAEKGIQ 450
                 N L+ G C +  + EA      MA  GI+
Sbjct: 561 PNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIE 595



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 69/347 (19%), Positives = 135/347 (38%), Gaps = 55/347 (15%)

Query: 81  PGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFAS 140
           P P VK+F      L  +        ++D++            +++ ++ NV+   TF S
Sbjct: 524 PPPGVKYFSSIINNLCKEGRVAEGKDIMDMM------------VQTGQRPNVV---TFNS 568

Query: 141 VFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGR 199
           +   Y +   +++A    D M   G + + +   +L+   C++G+  DA    R ++   
Sbjct: 569 LMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKG 628

Query: 200 IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIY 259
           +KP +  Y+I+L G  + R    AKK F EM+     +     +  +Y            
Sbjct: 629 VKPTSVLYSIILHGLFQARRTTAAKKMFHEMI-----ESGTTVSIHTY------------ 671

Query: 260 ETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMM 319
                           G+    L    C    N+   +         +  + D   +N++
Sbjct: 672 ----------------GVVLGGLCRNNCTDEANMLLEKLFA------MNVKFDIITFNIV 709

Query: 320 ISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNEN 379
           IS          A +L D +   G  P+IQTY+++   L+K     EA  LF  + K+ +
Sbjct: 710 ISAMFKVGRRQEAKELFDAISTYGLVPNIQTYSMMITNLIKEESYEEADNLFISVEKSGH 769

Query: 380 VLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVA 426
             +       VR+ ++  +   A  +   + EN+ +  + T +LL +
Sbjct: 770 ASDSRLLNHIVRMLLNKAEVAKASNYLSIIGENNLTLEASTISLLAS 816


>gi|326505926|dbj|BAJ91202.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 669

 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 76/336 (22%), Positives = 141/336 (41%), Gaps = 16/336 (4%)

Query: 146 VVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKP-DN 204
           +  D + +A    +     G   DV+    L+  +CR G+T DA + LR  +    P D 
Sbjct: 50  IARDDLAEAARLVETSSSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRTAEASGAPVDV 109

Query: 205 DTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLIT-LLKG-CDG--IYE 260
             Y  L+ G+ +   +  A++    M          VP  D+Y  T +++G CD   + +
Sbjct: 110 FAYNTLVAGYCRYGRLDAARRLIASM---------PVPP-DAYTYTPIIRGLCDRGRVGD 159

Query: 261 TVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMI 320
            +  L  M++RGC P +  + +  E          A  +   M  + G  P+   YN++I
Sbjct: 160 ALALLDDMLQRGCQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAK-GCTPNIVTYNVII 218

Query: 321 SLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENV 380
           +  C       A ++L+ +   G  PDI +Y  + + L   R+  +   LF EMV  + V
Sbjct: 219 NGMCREGRVDDAKEILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCV 278

Query: 381 LNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKY 440
            N       VR +        AI+  + M ++ C+  +   N+++  +C    + +A  +
Sbjct: 279 PNEVTFDMLVRFFCRGGMVERAIQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDF 338

Query: 441 AKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELL 476
              M   G      + + + + L +A +    +ELL
Sbjct: 339 LNNMGMYGCNPDTISYTTVLRGLCRAGRWEHAKELL 374



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 67/265 (25%), Positives = 121/265 (45%), Gaps = 17/265 (6%)

Query: 121 WDAIKSM-----KKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNS 175
           WD +K +      K+ V +  TF  +   +     V+ AI     M Q+GC  +    N 
Sbjct: 262 WDDVKVLFAEMVDKKCVPNEVTFDMLVRFFCRGGMVERAIQVLQQMSQHGCTPNTTLCNI 321

Query: 176 LLSAICRDGKTIDAWQFLRVVDG-RIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEV 234
           +++AIC+ G+  DA+ FL  +      PD  +Y  +L G  +     +AK+   EMV + 
Sbjct: 322 VINAICKQGRVDDAYDFLNNMGMYGCNPDTISYTTVLRGLCRAGRWEHAKELLPEMVRK- 380

Query: 235 GWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMM-ERGCNPGM-TFFKLAFEECLTGQN 292
              P N   +++++  L +   G+ E    L  +M E GC+ G+ T+  L    C+ G+ 
Sbjct: 381 -NCPPNEVTFNTFICILCQ--KGLIEQAIKLIELMPEYGCSVGIVTYNALVHGFCVQGRV 437

Query: 293 LRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYN 352
               E     +   +   P+T  Y  +++  C++    AA +LL  M+      +  T+N
Sbjct: 438 DSALE-----LFNNLPCEPNTITYTTLLTGLCHAERLDAAAELLAGMIQKDCPLNAVTFN 492

Query: 353 ILFEFLVKGRKLWEASGLFNEMVKN 377
           +L  F  +   + EA  L N+M+++
Sbjct: 493 VLVSFFCQKGFVEEAMELVNQMMEH 517



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 60/272 (22%), Positives = 99/272 (36%), Gaps = 39/272 (14%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           TF +          ++ AI   ++M +YGC   +   N+L+   C  G+   A +    +
Sbjct: 388 TFNTFICILCQKGLIEQAIKLIELMPEYGCSVGIVTYNALVHGFCVQGRVDSALELFNNL 447

Query: 197 DGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD 256
               +P+  TY  LL G      +  A +    M+ +    P N   ++  L++      
Sbjct: 448 P--CEPNTITYTTLLTGLCHAERLDAAAELLAGMIQKDC--PLNAVTFN-VLVSFFCQKG 502

Query: 257 GIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGR---------- 306
            + E +  + +MME GC P +  F    +      N   A  +   +V +          
Sbjct: 503 FVEEAMELVNQMMEHGCTPNLITFNTLLDGITKDCNSEEALELLHGLVSKGVSLDTITYS 562

Query: 307 ------------------------IGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYN 342
                                   +G RP   MYN ++   C   ET  A+     MV N
Sbjct: 563 SVVDVLSREDRTEEAIQMLHAVQDMGMRPKVGMYNKILFALCKRCETDQAIDFFAYMVSN 622

Query: 343 GAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
           G  P+  TY IL E L     L EA  + +E+
Sbjct: 623 GCMPNESTYIILIEGLAHEGLLKEARYVLSEL 654



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 79/171 (46%), Gaps = 5/171 (2%)

Query: 117 FDAMWDAIKSM-KKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNS 175
            DA  + +  M +K+  L+  TF  + S +     V++A+   + M ++GC  ++   N+
Sbjct: 469 LDAAAELLAGMIQKDCPLNAVTFNVLVSFFCQKGFVEEAMELVNQMMEHGCTPNLITFNT 528

Query: 176 LLSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEV 234
           LL  I +D  + +A + L  +V   +  D  TY+ +++   +E     A +     V ++
Sbjct: 529 LLDGITKDCNSEEALELLHGLVSKGVSLDTITYSSVVDVLSREDRTEEAIQML-HAVQDM 587

Query: 235 GWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFE 285
           G  P  V  Y+  L  L K C+   + ++    M+  GC P  + + +  E
Sbjct: 588 GMRP-KVGMYNKILFALCKRCE-TDQAIDFFAYMVSNGCMPNESTYIILIE 636


>gi|147789724|emb|CAN67401.1| hypothetical protein VITISV_025967 [Vitis vinifera]
          Length = 592

 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 86/370 (23%), Positives = 146/370 (39%), Gaps = 8/370 (2%)

Query: 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDV 160
           +A+N V+    K    +A    +  MK    L  + T+  +  S     ++  A+T  D 
Sbjct: 148 FAYNAVISGFCKVNQIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALTVLDQ 207

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERD 219
           +    C   V     L+ A   +G   +A + L  +  R + PD  TY  ++ G  KE  
Sbjct: 208 LLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEGM 267

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSL-KRMMERGCNPGMT 278
           V  A +    +  + G +PD V +Y+  L   L    G ++    L   M  RGC P   
Sbjct: 268 VERAAELITSLTSK-GCEPD-VISYNILLRAFLN--QGKWDEGEKLVAEMFSRGCEPNKV 323

Query: 279 FFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDE 338
            + +          +  A  +   M+ +    PDT+ Y+ +IS  C       A+ ++D 
Sbjct: 324 TYSILISSLCRFGRIDEAISVLKVMIEK-ELTPDTYSYDPLISALCKEGRLDLAIGIMDY 382

Query: 339 MVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDD 398
           M+ NG  PDI  YN +   L K     +A  +FN++       N  +    +       D
Sbjct: 383 MISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISALWSCGD 442

Query: 399 PYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSK 458
              A+     MI         T N L++ LC   ++ EA+     M + G + T  + + 
Sbjct: 443 RSRALGMVPAMISKGIDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNI 502

Query: 459 LKQILIKARK 468
           +   L K R+
Sbjct: 503 VLLGLCKVRR 512



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 64/219 (29%), Positives = 104/219 (47%), Gaps = 9/219 (4%)

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRV-VDGRIKPDNDTYAILLEGWEKERD 219
           M   GC+ +    + L+S++CR G+  +A   L+V ++  + PD  +Y  L+    KE  
Sbjct: 313 MFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGR 372

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDG--IYETVNSLKRMMERGCNPGM 277
           +  A      M I  G  PD V  Y++ L  L K  +     E  N L+ M   GC P +
Sbjct: 373 LDLAIGIMDYM-ISNGCLPDIV-NYNTILAALCKNGNANQALEIFNKLRGM---GCPPNV 427

Query: 278 TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLD 337
           + +        +  +   A  +  AM+ + G  PD   YN +IS  C       A+ LLD
Sbjct: 428 SSYNTMISALWSCGDRSRALGMVPAMISK-GIDPDEITYNSLISCLCRDGLVEEAIGLLD 486

Query: 338 EMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK 376
           +M  +G  P + +YNI+   L K R++ +A G+F EM++
Sbjct: 487 DMEQSGFRPTVISYNIVLLGLCKVRRIDDAIGMFAEMIE 525



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/224 (24%), Positives = 101/224 (45%), Gaps = 9/224 (4%)

Query: 136 ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR- 194
            T++ + SS     R+ +AI+   VM +     D ++ + L+SA+C++G+   A   +  
Sbjct: 323 VTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDY 382

Query: 195 VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG 254
           ++     PD   Y  +L    K  +   A + F ++   +G  P NV +Y++ +I+ L  
Sbjct: 383 MISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLR-GMGCPP-NVSSYNT-MISALWS 439

Query: 255 CDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAM--VGRIGFRPD 312
           C      +  +  M+ +G +P    +  +   CL    L   E   G +  + + GFRP 
Sbjct: 440 CGDRSRALGMVPAMISKGIDPDEITYN-SLISCLCRDGL--VEEAIGLLDDMEQSGFRPT 496

Query: 313 THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFE 356
              YN+++   C       A+ +  EM+  G  P+  TY +L E
Sbjct: 497 VISYNIVLLGLCKVRRIDDAIGMFAEMIEKGCRPNETTYILLIE 540



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 66/294 (22%), Positives = 118/294 (40%), Gaps = 6/294 (2%)

Query: 173 LNSLLSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMV 231
           L  LL+  C+ GK  ++  FL  +V+    PD      L++G+   +++  A +     +
Sbjct: 81  LMKLLNRSCKAGKFNESLYFLECLVNKGYTPDVILCTKLIKGFFNFKNIEKASRVME--I 138

Query: 232 IEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQ 291
           +E   +PD V AY++ +    K  + I      L RM  RG  P +  + +        +
Sbjct: 139 LESHTEPD-VFAYNAVISGFCK-VNQIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRR 196

Query: 292 NLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTY 351
            L  A  +   ++      P    Y ++I           AMKLL+EM+  G  PD+ TY
Sbjct: 197 KLGLALTVLDQLLLD-NCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTY 255

Query: 352 NILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIE 411
           N +   + K   +  A+ L   +       +  +    +R +++        K    M  
Sbjct: 256 NAIIRGMCKEGMVERAAELITSLTSKGCEPDVISYNILLRAFLNQGKWDEGEKLVAEMFS 315

Query: 412 NHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIK 465
             C     T ++L++ LC    + EA+   K M EK +    ++   L   L K
Sbjct: 316 RGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCK 369



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 66/308 (21%), Positives = 121/308 (39%), Gaps = 18/308 (5%)

Query: 148 ADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTY 207
           A +  +++   + +   G   DV     L+           A + + +++   +PD   Y
Sbjct: 91  AGKFNESLYFLECLVNKGYTPDVILCTKLIKGFFNFKNIEKASRVMEILESHTEPDVFAY 150

Query: 208 AILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD----GIYETVN 263
             ++ G+ K   +  A +    M    G+ PD V    +Y I +   C+    G+  TV 
Sbjct: 151 NAVISGFCKVNQIEAATQVLNRMKAR-GFLPDIV----TYNIMIGSLCNRRKLGLALTV- 204

Query: 264 SLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLY 323
            L +++   C P +  + +  E  +    +  A  +   M+ R G  PD + YN +I   
Sbjct: 205 -LDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLAR-GLLPDMYTYNAIIRGM 262

Query: 324 CYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK---NENV 380
           C       A +L+  +   G  PD+ +YNIL    +   K  E   L  EM       N 
Sbjct: 263 CKEGMVERAAELITSLTSKGCEPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNK 322

Query: 381 LNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKY 440
           + +    +++  +   D+   AI   K MIE   +  + + + L++ LC    L  A+  
Sbjct: 323 VTYSILISSLCRFGRIDE---AISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGI 379

Query: 441 AKGMAEKG 448
              M   G
Sbjct: 380 MDYMISNG 387


>gi|147857775|emb|CAN80799.1| hypothetical protein VITISV_019809 [Vitis vinifera]
          Length = 1099

 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 84/320 (26%), Positives = 142/320 (44%), Gaps = 11/320 (3%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRV 195
           ++ ++      A R+ +A+  F  M +  C   V     L+ A+   G+ ++A   F  +
Sbjct: 266 SYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEM 325

Query: 196 VDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
            +   +P+  TY +L++G  KE  +  A+K   EM  E G  P +V  Y++ +    K  
Sbjct: 326 KEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMS-EKGLIP-SVVTYNALIDGYCK-- 381

Query: 256 DGIYETVNSLKRMME-RGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDT 313
           +G+ +    +  +ME   C P   T+ +L    C   + +  A  +   M+ R    P  
Sbjct: 382 EGMIDDAFEILDLMESNSCGPNTRTYNELICGLC-KKRKVHKAMALLNKMLER-KLSPSL 439

Query: 314 HMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNE 373
             YN +I   C  N+  +A +LL  M  NG  PD  TY++  + L K  ++ EA  LF+ 
Sbjct: 440 ITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDS 499

Query: 374 MVKNENVLNHENCRAA-VRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMH 432
            VK + V  +E    A +  Y       VA    + M+ + C   S T N+L+ GLC   
Sbjct: 500 -VKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEK 558

Query: 433 MLPEAVKYAKGMAEKGIQVT 452
            + EA      M   G++ T
Sbjct: 559 KMKEASSLVAKMLTMGVKPT 578



 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 90/387 (23%), Positives = 154/387 (39%), Gaps = 26/387 (6%)

Query: 104 WNLVVDLLGKNCLFDAMWDA-IKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVME 162
           +N ++  L K  L D M    ++ +  +   ++ TF ++ + Y     V +A      + 
Sbjct: 162 YNTILMSLSKFLLIDEMKTVYLELLNNQISPNIYTFNAMVNGYCKIGNVVEAELYASKIV 221

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDND-TYAILLEGWEKERDVA 221
           Q G   D F   SL+   CR+    +A++   ++  +    N+ +Y  L+ G  +   + 
Sbjct: 222 QAGLHPDTFTYTSLILGHCRNKGVDNAYEVFLIMPQKGCQRNEVSYTNLIHGLCEAGRIN 281

Query: 222 NAKKTFGEMVIEVGWDPDNVPAYDSY--LITLLKGCDGIYETVNSLKRMMERGCNPGMTF 279
            A K F +M      + +  P   +Y  LI  L G     E +N    M E+GC P +  
Sbjct: 282 EALKLFADMT-----EDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHT 336

Query: 280 FKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEM 339
           + +  +       +  A  +   M  + G  P    YN +I  YC       A ++LD M
Sbjct: 337 YTVLIDGLCKENKMDEARKMLSEMSEK-GLIPSVVTYNALIDGYCKEGMIDDAFEILDLM 395

Query: 340 VYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNE--------NVLNHENCRAAVR 391
             N   P+ +TYN L   L K RK+ +A  L N+M++ +        N L H  C+    
Sbjct: 396 ESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKV--- 452

Query: 392 VYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQV 451
                +D   A +    M EN       T ++ +  LC    + EA      +  KG++ 
Sbjct: 453 -----NDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKA 507

Query: 452 TPFALSKLKQILIKARKEAVYEELLKK 478
                + L     K  K  V   LL++
Sbjct: 508 NEVIYTALIDGYCKVGKIDVAYSLLER 534



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 86/360 (23%), Positives = 152/360 (42%), Gaps = 35/360 (9%)

Query: 94  QLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKD 153
           ++ND  S Y    ++ L+ +N L    W               T++    +     RV++
Sbjct: 451 KVNDLESAYR---LLSLMNENGLVPDQW---------------TYSVFIDTLCKEGRVEE 492

Query: 154 AITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLE 212
           A T FD ++  G K +     +L+   C+ GK   A+  L R+++    P++ TY +L+E
Sbjct: 493 AGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIE 552

Query: 213 GWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYE-TVNSLKRMMER 271
           G  KE+ +  A     +M + +G  P  V  Y   +  +LK  DG ++  +     M+  
Sbjct: 553 GLCKEKKMKEASSLVAKM-LTMGVKP-TVVTYTILIGEMLK--DGAFDHALKVFNHMVSL 608

Query: 272 GCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGA 331
           G  P +  +        +   L   + +   M    G  PD   Y ++I  Y     T  
Sbjct: 609 GYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKM-NEEGILPDLVTYTVLIDGYARLGLTHR 667

Query: 332 AMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEA-SGLFNEMVKNENVLNHENCRAAV 390
           A   L  MV  G  P +   +IL + L    ++ E  S +  + V N N ++  +    +
Sbjct: 668 AFDFLKCMVDTGCKPSLYIVSILIKNLSHENRMKETRSEIGIDSVSNVNSVDIADVWKTL 727

Query: 391 RVYMDSDDPYVAIKFWKYMIENHCS-DLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
                  +  +A+K ++ M+E+ C+ D+S  G L +AG C    L EA      M E+G+
Sbjct: 728 -------EYEIALKLFEKMVEHGCTIDVSIYGAL-IAGFCQQERLEEAQGLVHHMKERGM 779



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 80/364 (21%), Positives = 153/364 (42%), Gaps = 47/364 (12%)

Query: 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASVFSSYVVADRVKDAITTFDV 160
           + +++ +D L K    +       S+K + V  +   + ++   Y    ++  A +  + 
Sbjct: 475 WTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLER 534

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERD 219
           M    C  + +  N L+  +C++ K  +A   + +++   +KP   TY IL+    K+  
Sbjct: 535 MLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGA 594

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNS-LKRMMERGCNP--- 275
             +A K F  MV  +G+ PD V  Y ++L        G+ E V+  + +M E G  P   
Sbjct: 595 FDHALKVFNHMV-SLGYQPD-VCTYTAFLHAYFS--QGMLEEVDDVIAKMNEEGILPDLV 650

Query: 276 ------------GMTFFKLAFEECLTGQNLRGAEFIWGAMV-------------GRIGFR 310
                       G+T     F +C+     + + +I   ++               IG  
Sbjct: 651 TYTVLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLSHENRMKETRSEIGID 710

Query: 311 PDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGL 370
             +++ ++ I+    + E   A+KL ++MV +G   D+  Y  L     +  +L EA GL
Sbjct: 711 SVSNVNSVDIADVWKTLEYEIALKLFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQGL 770

Query: 371 FNEMVK-----NENVLNHE-NCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLL 424
            + M +     +E++ N   +C   + VY +      A++    M+EN    L E+  LL
Sbjct: 771 VHHMKERGMSPSEDIYNSLLDCCCKLGVYAE------AVRLVDAMVENGLLPLLESYKLL 824

Query: 425 VAGL 428
           V GL
Sbjct: 825 VCGL 828



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 64/279 (22%), Positives = 123/279 (44%), Gaps = 12/279 (4%)

Query: 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDV 160
           + + +++D L K    D     +  M ++ ++ S+ T+ ++   Y     + DA    D+
Sbjct: 335 HTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDL 394

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERD 219
           ME   C  +    N L+  +C+  K   A   L ++++ ++ P   TY  L+ G  K  D
Sbjct: 395 MESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVND 454

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTF 279
           + +A +    M  E G  PD    Y  ++ TL K  +G  E   +L   ++     G+  
Sbjct: 455 LESAYRLLSLMN-ENGLVPDQW-TYSVFIDTLCK--EGRVEEAGTLFDSVKA---KGVKA 507

Query: 280 FKLAFEECLTGQNLRGAEFIWGAMVGRI---GFRPDTHMYNMMISLYCYSNETGAAMKLL 336
            ++ +   + G    G   +  +++ R+      P+++ YN++I   C   +   A  L+
Sbjct: 508 NEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLV 567

Query: 337 DEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
            +M+  G  P + TY IL   ++K      A  +FN MV
Sbjct: 568 AKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMV 606


>gi|449469180|ref|XP_004152299.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Cucumis sativus]
 gi|449484825|ref|XP_004156991.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Cucumis sativus]
          Length = 579

 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 124/547 (22%), Positives = 204/547 (37%), Gaps = 83/547 (15%)

Query: 4   NDKRRHHDDPSPDPHNKRKRSTFASHLDVPNL---PPTIKTLCEIIAN----TPSPTVED 56
             K  +H   +P    +R  S  A     PN       + ++C +++N    TP+  ++ 
Sbjct: 29  TSKTTNHIAIAPRALARRPTSRTAPTPRSPNTLGSSDVVNSVCSLLSNKNPQTPNLDLDH 88

Query: 57  VLDKTLIRVSQETVEQVLKFSYSHPGPA--VKFFRWSAYQLNDKHSPYAWNLVVDLLGKN 114
           +L +    +S + V Q+L  +Y   G A  ++FF WS  Q+  +        + D LG+ 
Sbjct: 89  LLKRFKDNLSSDFVLQIL-MNYKLLGRAKTLEFFSWSGLQMGFRFDASVVEYMADFLGRR 147

Query: 115 CLFDAM-WDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVME-QYGCKHDVFA 172
            LFD M    +  +  +  +S  TF+          RV++A+  F+ ME ++GCK D   
Sbjct: 148 KLFDDMKCLLVTVLSHKGRISCRTFSICIRFLGRQGRVREALCLFEEMEPKFGCKPDNLV 207

Query: 173 LNSLLSAICRD---GKTID-AWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFG 228
            N++L A+C+    G+ ID A +  R ++    PD  +Y+ ++ G  K    + A + FG
Sbjct: 208 FNNMLYALCKKEPTGELIDTALKIFRRIE---LPDKYSYSNVIIGLCKFGRYSTAIEAFG 264

Query: 229 EMVIEVGWDPDNVPAYDSYLITLLKGC-----DGIYET--VNSLKRMM----------ER 271
           EM     +    VP   +  I +   C     +G  E   VNS  R              
Sbjct: 265 EM-----YRAGLVPTRTAVNILIGNLCSLSAKEGAVEKVRVNSTYRPFTVLVPNVNPKSG 319

Query: 272 GCNPGMTFF----------------KLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHM 315
              P +  F                +L  E C  GQ       +   +V     R     
Sbjct: 320 AIEPAVGIFWAANKLSLVPSSFVTVQLISELCRLGQMQEAIRVL--KVVEGDKLRCAEEC 377

Query: 316 YNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
           Y++++   C       A  L   M+  G  P +  YN +   L K   L  A  +F  M 
Sbjct: 378 YSVVMKALCEHRHVDEASDLFGRMLSQGMKPKLAIYNYVICMLCKLGNLDSAERVFGIMN 437

Query: 376 KNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSD-----------LSETGNL- 423
           K     +H    A +  Y ++ D   A    K M+    S            + E G + 
Sbjct: 438 KKRCAPDHVTYSALIHAYGENRDWSAAYGLLKEMLSLGMSPHFHVYSIVDKLMREHGQID 497

Query: 424 ------------LVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAV 471
                       ++  LC    L  A +  K M EKG+    +     +    K  K  +
Sbjct: 498 LCLKLEMKWEAQILQKLCKQGQLEAAYEKMKSMLEKGLSPPIYVRDAFESAFQKKGKFKI 557

Query: 472 YEELLKK 478
             ELL+K
Sbjct: 558 ARELLQK 564


>gi|357501403|ref|XP_003620990.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496005|gb|AES77208.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 422

 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 74/295 (25%), Positives = 130/295 (44%), Gaps = 38/295 (12%)

Query: 118 DAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLL 177
           + M + ++ M++E++++L T              KDA+ TFD ++  G + +  ++N LL
Sbjct: 112 EKMREILEEMRQESLIALDTIW------------KDAVRTFDDLQFLGLEKNTESMNVLL 159

Query: 178 SAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKER-----------DVANAKKT 226
             +C++     A +    +   + P+  T+ IL+ GW   R           ++ +   T
Sbjct: 160 DTLCKEKFVEQAREIYLELKHYVAPNAHTFNILIHGWCNIRLIPPLFNVIVKNIISTWFT 219

Query: 227 FGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEE 286
              M  ++   P NV  Y + +  L K  +   E +  ++RM   GC P   FF      
Sbjct: 220 TFSMKCKLKIAPPNVVTYTTIMCALAKA-EKFDEALQVVERMNAVGCRPDTLFFNSFIYT 278

Query: 287 CLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAF- 345
                 +  A  I+   + +    P+T  YN MIS++CY  +   A  +L EM  +G   
Sbjct: 279 MGRAGRIDDATHIFKVAMPKASVAPNTSTYNSMISMFCYYAQKERAFDILKEMEKSGLCK 338

Query: 346 PDIQT-YNILFEFLVKGRKL--WEASGLFNEMVKNENV---------LNHENCRA 388
           PDIQT Y+ L +   K RK+  W  + + ++MV   ++         L H  CRA
Sbjct: 339 PDIQTYYHPLIKSCFKMRKVDTW-LNDILSDMVNKYHIGLDLSTYTLLIHGLCRA 392


>gi|302795973|ref|XP_002979749.1| hypothetical protein SELMODRAFT_111428 [Selaginella moellendorffii]
 gi|300152509|gb|EFJ19151.1| hypothetical protein SELMODRAFT_111428 [Selaginella moellendorffii]
          Length = 388

 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 70/280 (25%), Positives = 125/280 (44%), Gaps = 13/280 (4%)

Query: 104 WNLVVDLLGKNCLFDAMWDAIKSMKKENV---LSLATFASVFSSYVVADRVKDAITTFDV 160
           +N ++D+  K   FD+  + ++ M    +   +   T+ +V +S+     V+ A    ++
Sbjct: 49  YNTLIDVFHKLERFDSARELLEQMWDSGIRPGVMAETYNNVIASFCEVCNVRKAKGILEL 108

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDV 220
           M   GCK DV   N+L+S +C+  +  DA Q +R ++    P+  TY  ++ G  + R  
Sbjct: 109 MIDSGCKPDVVTYNTLISGLCKLRRADDALQLMREMEP--APNTITYNTVINGLWRSRKD 166

Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFF 280
             A+    EM I VG  P +V  Y+  +  L +  + + + V+    M ++ C      F
Sbjct: 167 TEAQALLDEM-ISVGC-PFSVSTYNCVIANLCRSRE-MEKAVDVFLYMRKKKCEADEVTF 223

Query: 281 KLAFEECLTGQNLR--GAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDE 338
               +  L  + L   G    W A   R G   D   Y  +++  C       A ++ + 
Sbjct: 224 ATLVDGFLRDKRLEDAGGTLDWMA---RAGIPSDVKSYTKLLNALCDRGSAQKACEIFNL 280

Query: 339 MVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNE 378
           MV  G  P + +YN+L + L K  ++  A  LF EM + E
Sbjct: 281 MVDRGYAPTLVSYNVLLKGLCKALRVEHALVLFREMQERE 320



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 71/340 (20%), Positives = 141/340 (41%), Gaps = 14/340 (4%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           ++  F SV + +  A  +  A+ T  +M + GC  D    N+L+    +  +   A + L
Sbjct: 10  NVVIFNSVVNGFARAGHLDGALGTLRMMRKAGCNPDEVTYNTLIDVFHKLERFDSARELL 69

Query: 194 RVV-DGRIKPD--NDTYAILLEGWEKERDVANAKKTFG--EMVIEVGWDPDNVPAYDSYL 248
             + D  I+P    +TY  ++  +    +V N +K  G  E++I+ G  PD V  Y+   
Sbjct: 70  EQMWDSGIRPGVMAETYNNVIASF---CEVCNVRKAKGILELMIDSGCKPD-VVTYN--- 122

Query: 249 ITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIG 308
            TL+ G   +    ++L+ M E    P    +          +    A+ +   M+  +G
Sbjct: 123 -TLISGLCKLRRADDALQLMREMEPAPNTITYNTVINGLWRSRKDTEAQALLDEMIS-VG 180

Query: 309 FRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEAS 368
                  YN +I+  C S E   A+ +   M       D  T+  L +  ++ ++L +A 
Sbjct: 181 CPFSVSTYNCVIANLCRSREMEKAVDVFLYMRKKKCEADEVTFATLVDGFLRDKRLEDAG 240

Query: 369 GLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGL 428
           G  + M +     + ++    +    D      A + +  M++   +    + N+L+ GL
Sbjct: 241 GTLDWMARAGIPSDVKSYTKLLNALCDRGSAQKACEIFNLMVDRGYAPTLVSYNVLLKGL 300

Query: 429 CDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARK 468
           C    +  A+   + M E+ IQ    + + + + L  AR+
Sbjct: 301 CKALRVEHALVLFREMQEREIQPDVVSYTTVIKGLCAARR 340


>gi|225443152|ref|XP_002263537.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80880,
           mitochondrial-like [Vitis vinifera]
          Length = 537

 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 92/371 (24%), Positives = 151/371 (40%), Gaps = 35/371 (9%)

Query: 105 NLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQY 164
            LV+ +LG    F   W  I+ + + +V +      +   Y  A+    AI TF +ME++
Sbjct: 147 GLVIWILGNCKKFGVAWCLIRELHRSSVDTRRAMLIMIDRYTAANDPCKAIKTFHIMEKF 206

Query: 165 GCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEK-ERDVANA 223
               D  A  +LL+A+C+ G   DA + +         + + + I+L GW     D+  A
Sbjct: 207 RLSPDQEAFYTLLTALCKHGNVEDAEELMFQNKKLFPLETEGFNIILNGWSNVSLDIFEA 266

Query: 224 KKTFGEMVIEVGWDPDNVPAYDSY--LITLLKGCDGIYETVNSLKRMMERGCNPGMTFFK 281
           K+ + EM          VP   +Y  +I+       +++++     M +RG  PG+  + 
Sbjct: 267 KRIWREMS-----KCCIVPNATTYTLMISCFSKFGNLFDSLRLFDDMKKRGWIPGLEVYN 321

Query: 282 -----LAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLL 336
                L  E CLT      A  I G  +  +G + D+  YN MI   C + +   A  +L
Sbjct: 322 SLIYVLTHENCLT-----EALKILGK-IKEMGLQLDSASYNCMIRPLCKAKKLEEARTIL 375

Query: 337 DEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDS 396
             M+     P  +TY+   E    G    E      E++KN              + +D+
Sbjct: 376 AAMIGENLGPTTETYHAFLE----GASYEETF----EVLKNLRTAGFGPNGDTFLLILDN 427

Query: 397 ----DDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVT 452
               D P  A+K W  M +      SE   +L+ GL     L +A +    M  KG    
Sbjct: 428 LFKLDQPENALKIWVEMKQFDVVPGSEHYKVLIEGLTKFGWLVKARELYAEMRSKGFLDD 487

Query: 453 PFALSKLKQIL 463
           P    KLK++L
Sbjct: 488 P----KLKKLL 494


>gi|224129154|ref|XP_002320514.1| predicted protein [Populus trichocarpa]
 gi|222861287|gb|EEE98829.1| predicted protein [Populus trichocarpa]
          Length = 478

 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 90/326 (27%), Positives = 143/326 (43%), Gaps = 19/326 (5%)

Query: 108 VDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCK 167
           +DL GK  LFD +  + +        S   F S+F +Y   ++ ++A   F  M+ YG  
Sbjct: 108 IDLPGK--LFDTLLFSYRMCDS----SPRVFDSLFKTYAHMNKFRNATDVFSRMKDYGFL 161

Query: 168 HDVFALNSLLSAICRDGKTIDAWQFLRVVDG-RIKPDNDTYAILLEGWEKERDVANAKKT 226
             V + N+ LS++    +   A  F R +   RI P++ T+ ++L    K   +  A + 
Sbjct: 162 PTVESCNAYLSSLLDFHRVDIALTFYREMRRCRISPNSYTFNLVLSALCKSGKLEKAVEV 221

Query: 227 FGEMVIEVGWDPDNVPAYDSYLITLLKG-CD-GIYETVNSLKRMM-ERGCNPGM-TFFKL 282
             EM   VG  P NV +Y+    TL+ G C+ G+      LK +M + G  P + TF  L
Sbjct: 222 LREME-SVGITP-NVVSYN----TLIAGHCNKGLLSIATKLKNLMGKNGLEPNVVTFNSL 275

Query: 283 AFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYN 342
               C  G+      F     V  +   P+T  YN +I+ Y     +  A K+ +EM+ N
Sbjct: 276 IHGFCKEGKLHEANRFFSEMKV--MNVTPNTVTYNTLINGYGQVGNSNMAGKVYEEMMRN 333

Query: 343 GAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVA 402
           G   DI TYN L   L K  K  +A+ L  E+ K   V N     A +       +   A
Sbjct: 334 GVKADILTYNALILGLCKEGKTKKAAFLVKELDKENLVPNASTYSALISGQCARKNSDRA 393

Query: 403 IKFWKYMIENHCSDLSETGNLLVAGL 428
            + +K M+ + C    +T  +L +  
Sbjct: 394 FQLYKSMVRSGCHPNEQTFKMLTSAF 419



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 78/316 (24%), Positives = 129/316 (40%), Gaps = 30/316 (9%)

Query: 127 MKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFA-----LNSLLSAIC 181
           ++K++VLSL      F+S    + +   + T  ++     K   F      L +LL++  
Sbjct: 52  IQKDHVLSL----EFFNSLKTLNPISLTLETHSIILHILTKKSKFKSAQSILRTLLASRS 107

Query: 182 RD--GKTIDAWQF-LRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDP 238
            D  GK  D   F  R+ D   +     +  L + +       NA   F  M  + G+ P
Sbjct: 108 IDLPGKLFDTLLFSYRMCDSSPR----VFDSLFKTYAHMNKFRNATDVFSRMK-DYGFLP 162

Query: 239 DNVPAYDSYLITLLKGCDGIYETVN---SLKRMMER-GCNPGMTFFKLAFEE-CLTGQNL 293
             V + ++YL +LL      +  V+   +  R M R   +P    F L     C +G+  
Sbjct: 163 -TVESCNAYLSSLLD-----FHRVDIALTFYREMRRCRISPNSYTFNLVLSALCKSGKLE 216

Query: 294 RGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNI 353
           +  E +    +  +G  P+   YN +I+ +C       A KL + M  NG  P++ T+N 
Sbjct: 217 KAVEVLRE--MESVGITPNVVSYNTLIAGHCNKGLLSIATKLKNLMGKNGLEPNVVTFNS 274

Query: 354 LFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENH 413
           L     K  KL EA+  F+EM       N       +  Y    +  +A K ++ M+ N 
Sbjct: 275 LIHGFCKEGKLHEANRFFSEMKVMNVTPNTVTYNTLINGYGQVGNSNMAGKVYEEMMRNG 334

Query: 414 CSDLSETGNLLVAGLC 429
                 T N L+ GLC
Sbjct: 335 VKADILTYNALILGLC 350



 Score = 38.5 bits (88), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 59/126 (46%), Gaps = 4/126 (3%)

Query: 334 KLLDEMVYNGAFPDI--QTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVR 391
           KL D ++++    D   + ++ LF+      K   A+ +F+ M     +   E+C A + 
Sbjct: 113 KLFDTLLFSYRMCDSSPRVFDSLFKTYAHMNKFRNATDVFSRMKDYGFLPTVESCNAYLS 172

Query: 392 VYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQV 451
             +D     +A+ F++ M     S  S T NL+++ LC    L +AV+  + M   GI  
Sbjct: 173 SLLDFHRVDIALTFYREMRRCRISPNSYTFNLVLSALCKSGKLEKAVEVLREMESVGI-- 230

Query: 452 TPFALS 457
           TP  +S
Sbjct: 231 TPNVVS 236


>gi|449493486|ref|XP_004159312.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g22960, mitochondrial-like [Cucumis sativus]
          Length = 772

 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 108/475 (22%), Positives = 180/475 (37%), Gaps = 73/475 (15%)

Query: 72  QVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLL-GKNCLFDAMW--DAIKSMK 128
           +VL      P  A++FFRW   Q + K S + +  ++D+L G + +  A W  + + S +
Sbjct: 90  RVLHSMRIRPRVALRFFRWVMAQPDFKESEFVFCAILDILVGNDLMHAAYWVMERVVSFE 149

Query: 129 KENVLSLATFASVFSSYVVADRVKDAI------------------------TTFDVMEQY 164
              V+ +     V    V    +++ +                          + +MEQ+
Sbjct: 150 MHGVVDVLIAGHVXCLLVFDKMIRNGLLPDVKNCNRILRVLRDENLLSKAKNVYGMMEQF 209

Query: 165 GCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVANA 223
           G K  V   N++L + C++G+   A + L  +  R   P++ TY +L+ G  K+ ++  A
Sbjct: 210 GIKPTVVTYNTMLDSYCKEGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSKKGELEQA 269

Query: 224 KKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD-GIY-ETVNSLKRMMERGCNPGM-TFF 280
           K    EM +  G    NV AY +Y   +   C  G++ E  + ++ M+ R   P + T+ 
Sbjct: 270 KGLIEEM-LNSGL---NVSAY-TYNPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLSTYN 324

Query: 281 KLAFEEC----LTGQNLRGAEFIWGAMVGRI----------------------------- 307
            L +  C    +TG  LR ++ +       I                             
Sbjct: 325 TLMYGLCKWVQVTGVRLRFSDMLKSKFTPDIVSFNSLLYGYCRTGCISEAFLLFDELKCR 384

Query: 308 GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEA 367
              P    YN +I   C      AA++L  EM   G FPDI TY IL     K   +  A
Sbjct: 385 DLVPTVITYNTLIHGLCMWGYLDAALRLKKEMTDQGLFPDIFTYTILVNGCFKLGYVSMA 444

Query: 368 SGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAG 427
            G FNEM+      +       +   M   D  VA    + M+         T N+ V  
Sbjct: 445 RGFFNEMLSKGLKPDRFAYNTRIVGEMKIADTSVAFSMQEEMLAAGFPPDVITYNVFVHA 504

Query: 428 LCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIK----ARKEAVYEELLKK 478
           LC      EA    + M   G+       + +    +K     +   V+ E+L K
Sbjct: 505 LCQQGNFEEACDLLENMVSDGLIPDHVTYTSIINGFVKNGHLRKAREVFNEMLSK 559



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 94/348 (27%), Positives = 141/348 (40%), Gaps = 61/348 (17%)

Query: 122 DAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAIC 181
           D +KS    +++S   F S+   Y     + +A   FD ++       V   N+L+  +C
Sbjct: 345 DMLKSKFTPDIVS---FNSLLYGYCRTGCISEAFLLFDELKCRDLVPTVITYNTLIHGLC 401

Query: 182 RDGKTIDAWQFLR--VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPD 239
             G  +DA   L+  + D  + PD  TY IL+ G  K   V+ A+  F EM+ + G  PD
Sbjct: 402 MWG-YLDAALRLKKEMTDQGLFPDIFTYTILVNGCFKLGYVSMARGFFNEMLSK-GLKPD 459

Query: 240 NVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFI 299
              AY++ ++  +K  D       S+   M+              EE L           
Sbjct: 460 RF-AYNTRIVGEMKIAD------TSVAFSMQ--------------EEMLAA--------- 489

Query: 300 WGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLV 359
                   GF PD   YN+ +   C       A  LL+ MV +G  PD  TY  +    V
Sbjct: 490 --------GFPPDVITYNVFVHALCQQGNFEEACDLLENMVSDGLIPDHVTYTSIINGFV 541

Query: 360 KGRKLWEASGLFNEM--------VKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIE 411
           K   L +A  +FNEM        V    VL H +   A +  +D     +A  ++  M+E
Sbjct: 542 KNGHLRKAREVFNEMLSKGVAPSVVTYTVLIHAH---AAKQMLD-----LAFMYFSKMLE 593

Query: 412 NHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKL 459
                   T N ++ GLC    + EA KY   M EKGI    F+ + L
Sbjct: 594 KSVPANVITYNAIINGLCMTRRMDEAYKYFDEMEEKGILPNKFSYTIL 641


>gi|145336953|ref|NP_176455.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806497|sp|Q3ECK2.2|PPR92_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62680, mitochondrial; Flags: Precursor
 gi|332195872|gb|AEE33993.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 548

 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 74/313 (23%), Positives = 134/313 (42%), Gaps = 40/313 (12%)

Query: 136 ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRV 195
            T  S+ + +   +RV DA++  D M + G K D+ A N+++ ++C+  +  DA+ F + 
Sbjct: 156 VTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKE 215

Query: 196 VDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG 254
           ++ + I+P+  TY  L+ G       ++A +   +M I+    P NV  Y + L   +K 
Sbjct: 216 IERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDM-IKKKITP-NVITYSALLDAFVK- 272

Query: 255 CDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTH 314
                                              G+ L   E ++  MV R+   PD  
Sbjct: 273 ----------------------------------NGKVLEAKE-LFEEMV-RMSIDPDIV 296

Query: 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
            Y+ +I+  C  +    A ++ D MV  G   D+ +YN L     K +++ +   LF EM
Sbjct: 297 TYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREM 356

Query: 375 VKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHML 434
            +   V N       ++ +  + D   A +F+  M     S    T N+L+ GLCD   L
Sbjct: 357 SQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGEL 416

Query: 435 PEAVKYAKGMAEK 447
            +A+   + M ++
Sbjct: 417 EKALVIFEDMQKR 429



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 82/327 (25%), Positives = 136/327 (41%), Gaps = 11/327 (3%)

Query: 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR 194
           +  + ++  S     RV DA   F  +E+ G + +V    +L++ +C   +  DA + L 
Sbjct: 190 IVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLS 249

Query: 195 -VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLK 253
            ++  +I P+  TY+ LL+ + K   V  AK+ F EMV  +  DPD +  Y S LI  L 
Sbjct: 250 DMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMV-RMSIDPD-IVTYSS-LINGLC 306

Query: 254 GCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDT 313
             D I E       M+ +GC   +  +          + +     ++  M  R G   +T
Sbjct: 307 LHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQR-GLVSNT 365

Query: 314 HMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNE 373
             YN +I  +  + +   A +   +M + G  PDI TYNIL   L    +L +A  +F +
Sbjct: 366 VTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFED 425

Query: 374 MVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSE---TGNLLVAGLCD 430
           M K E  L+       +R    +     A   W          L     T   +++GLC 
Sbjct: 426 MQKREMDLDIVTYTTVIRGMCKTGKVEEA---WSLFCSLSLKGLKPDIVTYTTMMSGLCT 482

Query: 431 MHMLPEAVKYAKGMAEKGIQVTPFALS 457
             +L E       M ++G+      LS
Sbjct: 483 KGLLHEVEALYTKMKQEGLMKNDCTLS 509



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 75/337 (22%), Positives = 146/337 (43%), Gaps = 46/337 (13%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           S+  F  + S+ V   +    I+    ME  G ++D++  N +++  C   +   A   L
Sbjct: 84  SIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSIL 143

Query: 194 -RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
            +++    +PD  T   L+ G+ +   V++A     +MV E+G+ PD + AY++ + +L 
Sbjct: 144 GKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMV-EIGYKPD-IVAYNAIIDSLC 201

Query: 253 KGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD 312
           K            KR+     N    FFK                      + R G RP+
Sbjct: 202 KT-----------KRV-----NDAFDFFK---------------------EIERKGIRPN 224

Query: 313 THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFN 372
              Y  +++  C S+    A +LL +M+     P++ TY+ L +  VK  K+ EA  LF 
Sbjct: 225 VVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFE 284

Query: 373 EMVK---NENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLC 429
           EMV+   + +++ + +    + ++   D+   A + +  M+   C     + N L+ G C
Sbjct: 285 EMVRMSIDPDIVTYSSLINGLCLHDRIDE---ANQMFDLMVSKGCLADVVSYNTLINGFC 341

Query: 430 DMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKA 466
               + + +K  + M+++G+       + L Q   +A
Sbjct: 342 KAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQA 378



 Score = 47.0 bits (110), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 37/162 (22%), Positives = 67/162 (41%)

Query: 307 IGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWE 366
           IG++PD   YN +I   C +     A     E+   G  P++ TY  L   L    +  +
Sbjct: 184 IGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSD 243

Query: 367 ASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVA 426
           A+ L ++M+K +   N     A +  ++ +     A + ++ M+         T + L+ 
Sbjct: 244 AARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLIN 303

Query: 427 GLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARK 468
           GLC    + EA +    M  KG      + + L     KA++
Sbjct: 304 GLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKR 345


>gi|357125910|ref|XP_003564632.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like isoform 1 [Brachypodium distachyon]
 gi|357125912|ref|XP_003564633.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like isoform 2 [Brachypodium distachyon]
          Length = 704

 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 90/386 (23%), Positives = 157/386 (40%), Gaps = 51/386 (13%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDG---KTIDAWQFL 193
           T++++ S +V  +R+ +A+   D M  Y  + D    N+LL    R+G   K +  W+ L
Sbjct: 196 TYSTLMSGFVKNNRLDNALYLLDEMPSYEVQPDAVCYNALLGGCFRNGEFEKAMRVWEQL 255

Query: 194 ----------------------------------RVVDGRIKPDNDTYAILLEGWEKERD 219
                                             R+V    +PD  TY  ++ G  +  D
Sbjct: 256 VRDPGASPNLATYNVMLDGLCKLGMFKEAGDVWERMVANNHQPDMITYGTMIHGLCRSTD 315

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG-CDG--IYETVNSLKRMMERGCNPG 276
           V +A + + EM I+ G  PD V  Y+S    LLKG C    + E       M   G    
Sbjct: 316 VDSAARVYSEM-IKTGLVPD-VVIYNS----LLKGFCHAGRVGEAWKFWDSMSVSGIR-N 368

Query: 277 MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLL 336
           +T + +  +    G  +  A  +W  +       PD   ++ MI   C       ++++L
Sbjct: 369 VTSYNIMLKGLFDGGMVDKATDLWELLEKDDSLSPDMVTFSTMIHGLCEKGFANKSLQIL 428

Query: 337 DEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDS 396
           +E   +G   D  +Y+ +   L K  +L +A  L+ ++  +    N     A +  +  +
Sbjct: 429 EEARTSGKELDEFSYSSMISGLCKDGRLDDAVKLYEKISMDSFKPNSHIYNALINGFCQA 488

Query: 397 DDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFAL 456
                AI+ +  M EN CS  + T N L+ GLC      EA ++ + M EKG  +     
Sbjct: 489 SKFSDAIRVYSQMAENDCSPTTITYNTLIHGLCKAEKYLEASRFTREMLEKGCMLDVNTY 548

Query: 457 SKLKQILIKARK----EAVYEELLKK 478
             L + L + +K     A++ ++L K
Sbjct: 549 GSLIRGLCRDKKIDGALALWNQILDK 574



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 79/349 (22%), Positives = 145/349 (41%), Gaps = 12/349 (3%)

Query: 104 WNLVVDLLGKNCLFDAMWDAIKSMKKEN-VLSLATFASVFSSYVVADRVKDAITTFDVME 162
           +N+++D L K  +F    D  + M   N    + T+ ++      +  V  A   +  M 
Sbjct: 268 YNVMLDGLCKLGMFKEAGDVWERMVANNHQPDMITYGTMIHGLCRSTDVDSAARVYSEMI 327

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVAN 222
           + G   DV   NSLL   C  G+  +AW+F   +      +  +Y I+L+G      V  
Sbjct: 328 KTGLVPDVVIYNSLLKGFCHAGRVGEAWKFWDSMSVSGIRNVTSYNIMLKGLFDGGMVDK 387

Query: 223 AKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG-CDGIYETVNSLKRMMERGCNPGMTFFK 281
           A   +  +  +    PD V        T++ G C+  +   N   +++E     G    +
Sbjct: 388 ATDLWELLEKDDSLSPDMVT-----FSTMIHGLCEKGF--ANKSLQILEEARTSGKELDE 440

Query: 282 LAFEECLTGQNLRGAEFIWGAMVGRI---GFRPDTHMYNMMISLYCYSNETGAAMKLLDE 338
            ++   ++G    G       +  +I    F+P++H+YN +I+ +C +++   A+++  +
Sbjct: 441 FSYSSMISGLCKDGRLDDAVKLYEKISMDSFKPNSHIYNALINGFCQASKFSDAIRVYSQ 500

Query: 339 MVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDD 398
           M  N   P   TYN L   L K  K  EAS    EM++   +L+     + +R       
Sbjct: 501 MAENDCSPTTITYNTLIHGLCKAEKYLEASRFTREMLEKGCMLDVNTYGSLIRGLCRDKK 560

Query: 399 PYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEK 447
              A+  W  +++          N+L+ GLC    + EA +    M EK
Sbjct: 561 IDGALALWNQILDKGLQTDVVMHNILIHGLCSAGKVDEASQLLSEMKEK 609



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 85/394 (21%), Positives = 160/394 (40%), Gaps = 57/394 (14%)

Query: 82  GPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLS--LATFA 139
           G A KF  W +  ++   +  ++N+++  L    + D   D  + ++K++ LS  + TF+
Sbjct: 352 GEAWKF--WDSMSVSGIRNVTSYNIMLKGLFDGGMVDKATDLWELLEKDDSLSPDMVTFS 409

Query: 140 SVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDG 198
           ++            ++   +     G + D F+ +S++S +C+DG+  DA + + ++   
Sbjct: 410 TMIHGLCEKGFANKSLQILEEARTSGKELDEFSYSSMISGLCKDGRLDDAVKLYEKISMD 469

Query: 199 RIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGI 258
             KP++  Y  L+ G+ +    ++A + + +M  E    P  +  Y++ +  L K  +  
Sbjct: 470 SFKPNSHIYNALINGFCQASKFSDAIRVYSQMA-ENDCSPTTI-TYNTLIHGLCKA-EKY 526

Query: 259 YETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNM 318
            E     + M+E+GC                                      D + Y  
Sbjct: 527 LEASRFTREMLEKGC------------------------------------MLDVNTYGS 550

Query: 319 MISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNE 378
           +I   C   +   A+ L ++++  G   D+  +NIL   L    K+ EAS L +EM K +
Sbjct: 551 LIRGLCRDKKIDGALALWNQILDKGLQTDVVMHNILIHGLCSAGKVDEASQLLSEM-KEK 609

Query: 379 NVLNHENCRAAVRVYMDSDDPYV-------AIKFWKYMIENHCSDLSETGNLLVAGLCDM 431
           N     NC   V  Y    D +        A   W  ++EN       + N  + GLC  
Sbjct: 610 N-----NCCPNVVTYNTLMDGFYETGCFDKAASLWMAILENGLVPDIISYNTRIKGLCSC 664

Query: 432 HMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIK 465
           +  PE V+    M   GI  T    + L + +IK
Sbjct: 665 NRTPEGVQLLNEMLASGIIPTAITWNILVRAVIK 698



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 106/512 (20%), Positives = 202/512 (39%), Gaps = 69/512 (13%)

Query: 15  PDPHNKRKRSTFASHLDV---------PNLPPTIKTLCEIIANTPS--PTVEDVLDKTLI 63
           PDP      +T  +HLD+         P  P     L  +  ++PS  P +  +L +   
Sbjct: 25  PDP------ATALAHLDLLVSTWPAYTPPQPLLFHLLRRLATSSPSRLPRLLGILPRLRH 78

Query: 64  RVS-QETVEQVLKFSYSH---PGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLF-- 117
           R    E+   V+  ++S    P  A+  FR     L       + N ++D   +   F  
Sbjct: 79  RPRFSESAALVVLSAFSRALMPDAALAAFRRLPSFLGCNPGVRSHNALLDAFVRARRFSD 138

Query: 118 -DAMWDAIK--SMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALN 174
            DA + ++   +  +    +L T+  +  S  V   +  A+T FD +   G   D    +
Sbjct: 139 ADAFFASLSHGAFGRRIAPNLQTYNIMLRSLCVRGDLDRAVTLFDSLRCRGLAPDRITYS 198

Query: 175 SLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIE 233
           +L+S   ++ +  +A   L  +    ++PD   Y  LL G  +  +   A + + ++V +
Sbjct: 199 TLMSGFVKNNRLDNALYLLDEMPSYEVQPDAVCYNALLGGCFRNGEFEKAMRVWEQLVRD 258

Query: 234 VGWDPDNVPAYDSYLITLLKGCDGIYETVNSL-KRMMERGCNPGMTFFKLAFEECLTGQN 292
            G  P N+  Y+  L  L K   G+++    + +RM+     P M  +           +
Sbjct: 259 PGASP-NLATYNVMLDGLCK--LGMFKEAGDVWERMVANNHQPDMITYGTMIHGLCRSTD 315

Query: 293 LRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYN 352
           +  A  ++  M+ + G  PD  +YN ++  +C++   G A K  D M  +G   ++ +YN
Sbjct: 316 VDSAARVYSEMI-KTGLVPDVVIYNSLLKGFCHAGRVGEAWKFWDSMSVSG-IRNVTSYN 373

Query: 353 ILFEFLVKGRKLWEASGLFNEMVKNENV---------LNHENCR-----AAVRVYMDSDD 398
           I+ + L  G  + +A+ L+  + K++++         + H  C       ++++  ++  
Sbjct: 374 IMLKGLFDGGMVDKATDLWELLEKDDSLSPDMVTFSTMIHGLCEKGFANKSLQILEEART 433

Query: 399 PYVAIKFWKY--MIENHCSDL--------------------SETGNLLVAGLCDMHMLPE 436
               +  + Y  MI   C D                     S   N L+ G C      +
Sbjct: 434 SGKELDEFSYSSMISGLCKDGRLDDAVKLYEKISMDSFKPNSHIYNALINGFCQASKFSD 493

Query: 437 AVKYAKGMAEKGIQVTPFALSKLKQILIKARK 468
           A++    MAE     T    + L   L KA K
Sbjct: 494 AIRVYSQMAENDCSPTTITYNTLIHGLCKAEK 525


>gi|357447159|ref|XP_003593855.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355482903|gb|AES64106.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 790

 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 101/453 (22%), Positives = 190/453 (41%), Gaps = 20/453 (4%)

Query: 37  PTIKTLCEIIA--NTPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQ 94
           P ++ +C +I+  +  +P  E+ L   L  ++   V  VL+ S      A+ FF W+  Q
Sbjct: 132 PIVREVCRLISLRSNWNPKFEENLRHLLRSLNPRLVCAVLR-SQDDERIALDFFYWADRQ 190

Query: 95  LNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASVFSSYVVADRVKD 153
              +H    +  ++D+L K  L       ++ M +  +  S   F+ V  SY  A  +++
Sbjct: 191 WRYRHDAIVYYTMLDILSKTRLCQGARRILRLMTRRGIERSPEAFSYVMVSYSRAGMLRN 250

Query: 154 AITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLE 212
           A+    +M++ G + D+   N+ +  + +  K   A +FL R+    I+PD  +Y  L++
Sbjct: 251 ALRILTLMQKAGVEPDLSICNTAIYVLVKGNKLEKALRFLERMKVAGIEPDIVSYNCLIK 310

Query: 213 GWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERG 272
           G+     + +A +   EM  + G  PD V +Y + +  L K        V  +KR+ME  
Sbjct: 311 GYCDVHRIDDALELIAEMPFK-GCPPDKV-SYYTVMAFLCKD-----RKVEEVKRLMENM 363

Query: 273 CNPG------MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYS 326
                     +T+  L +     G       F+  A     GF  D   Y+ ++  +C +
Sbjct: 364 VQNSNLIPDQVTYNTLIYALSKHGHADDALVFLREA--EEKGFHIDKVGYSAVVDSFCKN 421

Query: 327 NETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENC 386
                A  L+ +M   G  PD+ TY  + +   +  K+ EA  +  +M K+    N    
Sbjct: 422 KNIDKAKSLVIDMYSKGCNPDVVTYTAIIDGFCRVGKIDEAKKMLQQMYKHGCKPNTVTY 481

Query: 387 RAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAE 446
              +     +     A +      E+  +  + T + ++ GL     L EA    + M E
Sbjct: 482 TVLLNGLCHNGKSLEAREMINVSEEHWWTPNAITYSAVMHGLRREGKLSEACDLTREMIE 541

Query: 447 KGIQVTPFALSKLKQILIKARKEAVYEELLKKC 479
           KG    P  ++ L Q L + +     ++ L++C
Sbjct: 542 KGFLPNPVDINLLIQSLCRNQNVVGAKKYLEEC 574



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 69/280 (24%), Positives = 118/280 (42%), Gaps = 56/280 (20%)

Query: 97  DKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAIT 156
           +K+   A +LV+D+  K C  D                + T+ ++   +    ++ +A  
Sbjct: 421 NKNIDKAKSLVIDMYSKGCNPD----------------VVTYTAIIDGFCRVGKIDEAKK 464

Query: 157 TFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRI-KPDNDTYAILLEGWE 215
               M ++GCK +      LL+ +C +GK+++A + + V +     P+  TY+ ++ G  
Sbjct: 465 MLQQMYKHGCKPNTVTYTVLLNGLCHNGKSLEAREMINVSEEHWWTPNAITYSAVMHGLR 524

Query: 216 KERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNP 275
           +E  ++ A     EM IE G+ P+ V       I LL         + SL R      N 
Sbjct: 525 REGKLSEACDLTREM-IEKGFLPNPVD------INLL---------IQSLCR------NQ 562

Query: 276 GMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKL 335
            +   K   EECL            G  V  + F         +I  +C   +  AA+ +
Sbjct: 563 NVVGAKKYLEECLHK----------GCAVNVVNFTS-------VIYGFCQIGDLDAALSM 605

Query: 336 LDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
           L++M  +   PD  TY  LF+ L K  +L EAS L  +M+
Sbjct: 606 LEDMYLSNKHPDAITYTTLFDALGKKSRLDEASELIVKML 645



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 66/293 (22%), Positives = 117/293 (39%), Gaps = 19/293 (6%)

Query: 169 DVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTF 227
           D    N+L+ A+ + G   DA  FLR  + +    D   Y+ +++ + K +++  AK   
Sbjct: 372 DQVTYNTLIYALSKHGHADDALVFLREAEEKGFHIDKVGYSAVVDSFCKNKNIDKAKSLV 431

Query: 228 GEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPG-MTFFKLAFEE 286
            +M  + G +PD V  Y + +    +    I E    L++M + GC P  +T+  L    
Sbjct: 432 IDMYSK-GCNPD-VVTYTAIIDGFCR-VGKIDEAKKMLQQMYKHGCKPNTVTYTVLLNGL 488

Query: 287 CLTGQNLRGAEFI------WGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMV 340
           C  G++L   E I      W        + P+   Y+ ++       +   A  L  EM+
Sbjct: 489 CHNGKSLEAREMINVSEEHW--------WTPNAITYSAVMHGLRREGKLSEACDLTREMI 540

Query: 341 YNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPY 400
             G  P+    N+L + L + + +  A     E +     +N  N  + +  +    D  
Sbjct: 541 EKGFLPNPVDINLLIQSLCRNQNVVGAKKYLEECLHKGCAVNVVNFTSVIYGFCQIGDLD 600

Query: 401 VAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTP 453
            A+   + M  ++    + T   L   L     L EA +    M  KGI  TP
Sbjct: 601 AALSMLEDMYLSNKHPDAITYTTLFDALGKKSRLDEASELIVKMLGKGIDPTP 653


>gi|298204849|emb|CBI34156.3| unnamed protein product [Vitis vinifera]
          Length = 442

 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 66/246 (26%), Positives = 108/246 (43%), Gaps = 15/246 (6%)

Query: 136 ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRV 195
            TF ++     V  ++ +A+  FD M   G + +V    +L++ +C+ G T  A + LR 
Sbjct: 116 TTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRS 175

Query: 196 VD-GRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG 254
           ++ G  +PD   Y  +++   K+R V  A   F +MV + G  PD +  Y S +  L   
Sbjct: 176 MEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQ-GISPD-IFTYTSLVHALCNL 233

Query: 255 CDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTH 314
           C+  + T   L +M+     P +  F    +       +  A  I   M+ R G  PD  
Sbjct: 234 CEWKHVT-TLLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQR-GVEPDVV 291

Query: 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRK-------LWEA 367
            Y  ++  +C  +E   A+K+ D MV  G  PD+ +Y  L      G+K       L E 
Sbjct: 292 TYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLIN---AGKKDGGGLVSLQEV 348

Query: 368 SGLFNE 373
            GL  E
Sbjct: 349 IGLVKE 354



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 67/279 (24%), Positives = 120/279 (43%), Gaps = 27/279 (9%)

Query: 117 FDAMWDAIKSMKK-ENVLSLATFASVF-------------SSYVVADRVKDAITTFDVME 162
           F  +  +I  MK    VLSL+T    F             +S+   +RV  A +    + 
Sbjct: 48  FAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLNILINSFCHLNRVGFAFSVLAKIL 107

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDVA 221
           + G + D     +L+  +C +GK  +A   F +++D   +P+  TY  L+ G  K  + +
Sbjct: 108 KLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLINGLCKVGNTS 167

Query: 222 NAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGM-TFF 280
            A +    M  E G    +V  Y S + +L K    + E  N   +M+ +G +P + T+ 
Sbjct: 168 AAIRLLRSM--EQGNCQPDVVIYTSIIDSLCKD-RQVTEAFNLFSQMVGQGISPDIFTYT 224

Query: 281 KLAFEECLTGQNL---RGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLD 337
            L    C    NL   +    +   MV      PD  +++ ++   C   +   A +++D
Sbjct: 225 SLVHALC----NLCEWKHVTTLLNQMVNS-KILPDVVIFSTVVDALCKEGKVTEAHEIVD 279

Query: 338 EMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK 376
            M+  G  PD+ TY  L +      ++ EA  +F+ MV+
Sbjct: 280 MMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVR 318



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 85/373 (22%), Positives = 139/373 (37%), Gaps = 63/373 (16%)

Query: 83  PAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL----SLATF 138
           P + FF  S    N+ HS            K+  F+ + DA+ S  +   +    S+  F
Sbjct: 4   PPLPFFSSSQ---NNFHS------------KSLHFNTLDDALSSFNRLLHMHPPPSIVDF 48

Query: 139 ASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVD 197
           A + +S          ++    M+ +G   +V+ LN L+++ C   +   A+  L +++ 
Sbjct: 49  AKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLNILINSFCHLNRVGFAFSVLAKILK 108

Query: 198 GRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDG 257
              +PD  T+  L+ G   E  +  A   F +M+ E G+ P NV  Y     TL+ G   
Sbjct: 109 LGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDE-GFQP-NVVTYG----TLINGLCK 162

Query: 258 IYETVNSLK--RMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHM 315
           +  T  +++  R ME+G              C                      +PD  +
Sbjct: 163 VGNTSAAIRLLRSMEQG-------------NC----------------------QPDVVI 187

Query: 316 YNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
           Y  +I   C   +   A  L  +MV  G  PDI TY  L   L    +    + L N+MV
Sbjct: 188 YTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMV 247

Query: 376 KNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLP 435
            ++ + +       V           A +    MI+        T   L+ G C    + 
Sbjct: 248 NSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMD 307

Query: 436 EAVKYAKGMAEKG 448
           EAVK    M  KG
Sbjct: 308 EAVKVFDMMVRKG 320



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 36/156 (23%), Positives = 63/156 (40%)

Query: 308 GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEA 367
           G  P+ +  N++I+ +C+ N  G A  +L +++  G  PD  T+  L   L    K+ EA
Sbjct: 75  GVPPNVYTLNILINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEA 134

Query: 368 SGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAG 427
             LF++M+      N       +       +   AI+  + M + +C         ++  
Sbjct: 135 LHLFDKMIDEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDS 194

Query: 428 LCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQIL 463
           LC    + EA      M  +GI    F  + L   L
Sbjct: 195 LCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHAL 230


>gi|297723047|ref|NP_001173887.1| Os04g0351333 [Oryza sativa Japonica Group]
 gi|255675359|dbj|BAH92615.1| Os04g0351333 [Oryza sativa Japonica Group]
          Length = 740

 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 61/244 (25%), Positives = 114/244 (46%), Gaps = 8/244 (3%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAW-QFLRV 195
            F  + ++Y     +  A+  F+ M+  G   D     +++S++CR G+  DA  +F  +
Sbjct: 262 VFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHM 321

Query: 196 VDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
           VD  + P    Y  L++G     ++  AK+   EM +     P  V  + S +  L K  
Sbjct: 322 VDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEM-MNKDIPPPGVKYFSSIINNLCK-- 378

Query: 256 DG-IYETVNSLKRMMERGCNPGMTFFKLAFEE-CLTGQNLRGAEFIWGAMVGRIGFRPDT 313
           +G + E  + +  M++ G  P +  F    E  CL G N+  A  +  AM   IG  P+ 
Sbjct: 379 EGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVG-NMEEAFALLDAM-ASIGIEPNC 436

Query: 314 HMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNE 373
           ++Y  ++  YC +     A+ +  +M++ G  P    Y+I+   L + R+   A  +F+E
Sbjct: 437 YIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLFQARRTTAAKKMFHE 496

Query: 374 MVKN 377
           M+++
Sbjct: 497 MIES 500



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 69/347 (19%), Positives = 135/347 (38%), Gaps = 55/347 (15%)

Query: 81  PGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFAS 140
           P P VK+F      L  +        ++D++            +++ ++ NV+   TF S
Sbjct: 362 PPPGVKYFSSIINNLCKEGRVAEGKDIMDMM------------VQTGQRPNVV---TFNS 406

Query: 141 VFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGR 199
           +   Y +   +++A    D M   G + + +   +L+   C++G+  DA    R ++   
Sbjct: 407 LMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKG 466

Query: 200 IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIY 259
           +KP +  Y+I+L G  + R    AKK F EM+     +     +  +Y            
Sbjct: 467 VKPTSVLYSIILHGLFQARRTTAAKKMFHEMI-----ESGTTVSIHTY------------ 509

Query: 260 ETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMM 319
                           G+    L    C    N+   +         +  + D   +N++
Sbjct: 510 ----------------GVVLGGLCRNNCTDEANMLLEKLFA------MNVKFDIITFNIV 547

Query: 320 ISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNEN 379
           IS          A +L D +   G  P+IQTY+++   L+K     EA  LF  + K+ +
Sbjct: 548 ISAMFKVGRRQEAKELFDAISTYGLVPNIQTYSMMITNLIKEESYEEADNLFISVEKSGH 607

Query: 380 VLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVA 426
             +       VR+ ++  +   A  +   + EN+ +  + T +LL +
Sbjct: 608 ASDSRLLNHIVRMLLNKAEVAKASNYLSIIGENNLTLEASTISLLAS 654



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 99/443 (22%), Positives = 177/443 (39%), Gaps = 93/443 (20%)

Query: 89  RWSAYQLNDKHSP---YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFA-SVFSS 144
           RW+      +HSP   + +N+++D   +    D +  AI     +N L    F+ S+   
Sbjct: 3   RWAC----PRHSPPTIHTYNILIDCYRRVHRPD-LGLAIVGRLLKNGLGPDDFSYSLIYG 57

Query: 145 YVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPD 203
           +V    V  A   F  M + G    +   NS++  +C+  +   A   + ++VD  I PD
Sbjct: 58  FVKDGEVDKAHCLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSGIAPD 117

Query: 204 NDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG--CDGIY-E 260
             TY+++++G  K + +  A++   +MV E G  P+++  Y+S    L+ G    G++ E
Sbjct: 118 LFTYSLIIDGLCKSKAMDKAERVLEQMV-EAGTRPNSI-TYNS----LIHGYSISGMWNE 171

Query: 261 TVNSLKRMMERGCNPGM----TFFKLAFE-------ECL--------------------- 288
           +V   K+M   G  P +    +F    F+       +C+                     
Sbjct: 172 SVRVFKQMSSCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLH 231

Query: 289 -----TGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNG 343
                T   L     I+  M+ + G  P+ H++N++I+ Y        AM + ++M   G
Sbjct: 232 GYATATDSCLADVHNIFNLMLTK-GIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKG 290

Query: 344 AFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK-------------NENVLNHENCRAA- 389
             PD  T+  +   L +  +L +A   FN MV               +   NH     A 
Sbjct: 291 MIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAK 350

Query: 390 --VRVYMDSDDPYVAIKFWKYMIENHCSD------------LSETG--------NLLVAG 427
             +   M+ D P   +K++  +I N C +            + +TG        N L+ G
Sbjct: 351 ELISEMMNKDIPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEG 410

Query: 428 LCDMHMLPEAVKYAKGMAEKGIQ 450
            C +  + EA      MA  GI+
Sbjct: 411 YCLVGNMEEAFALLDAMASIGIE 433


>gi|222629056|gb|EEE61188.1| hypothetical protein OsJ_15186 [Oryza sativa Japonica Group]
          Length = 897

 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 85/339 (25%), Positives = 143/339 (42%), Gaps = 34/339 (10%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGC----------------KHDVFALNSLL 177
           + A FA +F       R+    TTF++M ++ C                + +    N+++
Sbjct: 467 AFALFADMFRL-----RLPLCTTTFNIMLRHLCSAGKPARALELLRQMPRPNAVTYNTVI 521

Query: 178 SAICRDGKTIDAWQFLRVVD--GRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVG 235
           +  C  G+   A   +R +   G I P+  TY  ++ GW K   V  A K F EM+ +  
Sbjct: 522 AGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGE 581

Query: 236 WDPDNVPAYDSYLITLLKG-CD-GIYETVNSLK-RMMERGCNPGMTFFKLAFEEC-LTGQ 291
             P+ V  Y++    L+ G CD G  +T    + RM+ERG    +  + L      + G+
Sbjct: 582 VKPEAV-MYNA----LIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGR 636

Query: 292 NLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTY 351
                E +    +G  G  PD   YN++I+ +C       A+++ + M   G    + TY
Sbjct: 637 GTEAYELV--EEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTY 694

Query: 352 NILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIE 411
             L   L K  ++ E   LF+E V+     +     A +  +  S +   A +    M +
Sbjct: 695 TALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEK 754

Query: 412 NHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQ 450
              +    T N L+ GLC +  + EA K    M E+GIQ
Sbjct: 755 KRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQ 793



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 88/370 (23%), Positives = 135/370 (36%), Gaps = 51/370 (13%)

Query: 116 LFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNS 175
           +FD M      +K E V+    + ++   Y    ++  A+   D M + G    V   N 
Sbjct: 572 VFDEMLTK-GEVKPEAVM----YNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNL 626

Query: 176 LLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEV 234
           L+ A+  DG+  +A++ +  + G+ + PD  TY IL+ G  KE +V  A + F  M    
Sbjct: 627 LVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRR- 685

Query: 235 GWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLR 294
                 V  Y + +  L K    + ET       + RG  P +  +        T  N+ 
Sbjct: 686 -GVRATVVTYTALIYALSKKGQ-VQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNID 743

Query: 295 GAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNIL 354
            A  I G M  +    PD   YN ++   C       A KL+DEM   G  PD+ TYN L
Sbjct: 744 RAFEIMGEMEKK-RIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTL 802

Query: 355 FEFLVKGRKLWEASGLFNEMVK---NENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIE 411
                    + +A  + NEM+    N  +L +                            
Sbjct: 803 ISGYSMKGDVKDALRIRNEMMNKGFNPTLLTY---------------------------- 834

Query: 412 NHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAV 471
                     N L+ GLC      +A    K M E GI         L + L    + A+
Sbjct: 835 ----------NALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEGLTTEDERAI 884

Query: 472 YEELLKKCKA 481
            +E L    A
Sbjct: 885 DDERLAAADA 894



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 65/264 (24%), Positives = 117/264 (44%), Gaps = 18/264 (6%)

Query: 104 WNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVME 162
           +NL+V  L  +      ++ ++ M  + +   + T+  + + +     VK A+  F+ M 
Sbjct: 624 YNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMS 683

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDVA 221
           + G +  V    +L+ A+ + G+  +  + F   V   I+PD   Y  L+       ++ 
Sbjct: 684 RRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNID 743

Query: 222 NAKKTFGEMVIEVGWDPDNVPAYDSYL--ITLLKGCDGIYETVNSLKRMMERGCNPGMTF 279
            A +  GEM  +    PD+V  Y++ +  + LL   D   E    +  M ERG  P +  
Sbjct: 744 RAFEIMGEME-KKRIAPDDV-TYNTLMRGLCLLGRVD---EARKLIDEMTERGIQPDL-- 796

Query: 280 FKLAFEECLTGQNLRG----AEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKL 335
             + +   ++G +++G    A  I   M+ + GF P    YN +I   C + +   A  +
Sbjct: 797 --VTYNTLISGYSMKGDVKDALRIRNEMMNK-GFNPTLLTYNALIQGLCKNGQGDDAENM 853

Query: 336 LDEMVYNGAFPDIQTYNILFEFLV 359
           + EMV NG  PD  TY  L E L 
Sbjct: 854 VKEMVENGITPDDSTYISLIEGLT 877


>gi|116309556|emb|CAH66618.1| OSIGBa0144C23.4 [Oryza sativa Indica Group]
          Length = 845

 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/244 (25%), Positives = 115/244 (47%), Gaps = 8/244 (3%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAW-QFLRV 195
            F  + ++Y     +  A+  F+ M+  G   D     +++S++CR G+  DA  +F  +
Sbjct: 425 VFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHM 484

Query: 196 VDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
           VD  + P    Y  L++G     ++  AK+   EM +     P  V  + S +  L K  
Sbjct: 485 VDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEM-MNKDIPPPGVKYFSSIINNLCK-- 541

Query: 256 DG-IYETVNSLKRMMERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDT 313
           +G + E  + +  M++ G  P + TF  L    CL G N+  A  +  AM   IG  P+ 
Sbjct: 542 EGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVG-NMEEAFALLDAM-ASIGIEPNC 599

Query: 314 HMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNE 373
           ++Y  ++  YC +     A+ +  +M++ G  P    Y+I+   L + R+   A  +F+E
Sbjct: 600 YIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLFQARRTTAAKKMFHE 659

Query: 374 MVKN 377
           M+++
Sbjct: 660 MIES 663



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 101/455 (22%), Positives = 182/455 (40%), Gaps = 96/455 (21%)

Query: 81  PGPAVKFF----RWSAYQLNDKHSP---YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL 133
           P  A++ F    RW+      +HSP   + +N+++D   +    D +  AI     +N L
Sbjct: 153 PALAIELFKRMDRWAC----PRHSPPTIHTYNILIDCYRRVHRPD-LGLAIVGRLLKNGL 207

Query: 134 SLATFA-SVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQF 192
               F+ S+   +V    V  A   F  M + G    +   NS++  +C+  +   A   
Sbjct: 208 GPDDFSYSLIYGFVKDGEVDKAHCLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESI 267

Query: 193 L-RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITL 251
           + ++VD  I PD  TY+++++G  K + +  A++   +MV E G  P+++  Y+S    L
Sbjct: 268 VQKMVDSGIAPDLFTYSLIIDGLCKSKAMDKAERVLEQMV-EAGTRPNSI-TYNS----L 321

Query: 252 LKG--CDGIY-ETVNSLKRMMERGCNPGM----TFFKLAFEECLTGQN--------LRGA 296
           + G    G++ E+V   K+M   G  P +    +F    F+   T +         L+G 
Sbjct: 322 IHGYSISGMWNESVRVFKQMSSCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGP 381

Query: 297 E----------------------FIWGAMVGRI---GFRPDTHMYNMMISLYCYSNETGA 331
           +                       +W  +   +   G  P+ H++N++I+ Y        
Sbjct: 382 KPDIISYSTNASWVCYWYVTVVWVMWHNIFNLMLTKGIAPNKHVFNILINAYARCGMMDK 441

Query: 332 AMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK-------------NE 378
           AM + ++M   G  PD  T+  +   L +  +L +A   FN MV               +
Sbjct: 442 AMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQ 501

Query: 379 NVLNHENCRAA---VRVYMDSDDPYVAIKFWKYMIENHCSD------------LSETG-- 421
              NH     A   +   M+ D P   +K++  +I N C +            + +TG  
Sbjct: 502 GCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQR 561

Query: 422 ------NLLVAGLCDMHMLPEAVKYAKGMAEKGIQ 450
                 N L+ G C +  + EA      MA  GI+
Sbjct: 562 PNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIE 596



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 69/347 (19%), Positives = 135/347 (38%), Gaps = 55/347 (15%)

Query: 81  PGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFAS 140
           P P VK+F      L  +        ++D++            +++ ++ NV+   TF S
Sbjct: 525 PPPGVKYFSSIINNLCKEGRVAEGKDIMDMM------------VQTGQRPNVV---TFNS 569

Query: 141 VFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGR 199
           +   Y +   +++A    D M   G + + +   +L+   C++G+  DA    R ++   
Sbjct: 570 LMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKG 629

Query: 200 IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIY 259
           +KP +  Y+I+L G  + R    AKK F EM+     +     +  +Y            
Sbjct: 630 VKPTSVLYSIILHGLFQARRTTAAKKMFHEMI-----ESGTTVSIHTY------------ 672

Query: 260 ETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMM 319
                           G+    L    C    N+   +         +  + D   +N++
Sbjct: 673 ----------------GVVLGGLCRNNCTDEANMLLEKLF------AMNVKFDIITFNIV 710

Query: 320 ISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNEN 379
           IS          A +L D +   G  P+IQTY+++   L+K     EA  LF  + K+ +
Sbjct: 711 ISAMFKVGRRQEAKELFDAISTYGLVPNIQTYSMMITNLIKEESYEEADNLFISVEKSGH 770

Query: 380 VLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVA 426
             +       VR+ ++  +   A  +   + EN+ +  + T +LL +
Sbjct: 771 ASDSRLLNHIVRMLLNKAEVAKASNYLSIIGENNLTLEASTISLLAS 817



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 59/246 (23%), Positives = 108/246 (43%), Gaps = 10/246 (4%)

Query: 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGC-KHD---VFALNSLLSAICRDGKTIDAW 190
           LA  A    S    D    AI  F  M+++ C +H    +   N L+    R  +     
Sbjct: 137 LAALARAPPSAACGDAPALAIELFKRMDRWACPRHSPPTIHTYNILIDCYRRVHRPDLGL 196

Query: 191 QFL-RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLI 249
             + R++   + PD+ +Y+ L+ G+ K+ +V  A   F EM +E G  P  +   +S + 
Sbjct: 197 AIVGRLLKNGLGPDDFSYS-LIYGFVKDGEVDKAHCLFLEM-MEQGVLP-KILICNSIIK 253

Query: 250 TLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGF 309
            L K  + + +  + +++M++ G  P +  + L  +     + +  AE +   MV   G 
Sbjct: 254 ELCKMKE-MDKAESIVQKMVDSGIAPDLFTYSLIIDGLCKSKAMDKAERVLEQMV-EAGT 311

Query: 310 RPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASG 369
           RP++  YN +I  Y  S     ++++  +M   G  P +   N     L K  +  EA  
Sbjct: 312 RPNSITYNSLIHGYSISGMWNESVRVFKQMSSCGVIPTVDNCNSFIHALFKHGRTNEAKC 371

Query: 370 LFNEMV 375
           +F+ MV
Sbjct: 372 IFDSMV 377



 Score = 47.8 bits (112), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 92/222 (41%), Gaps = 34/222 (15%)

Query: 172 ALNSLLSAI--------CRDG--------KTIDAWQFLRVVDGRIKPDNDTYAILLEGWE 215
           ALN +L+A+        C D         K +D W   R       P   TY IL++ + 
Sbjct: 132 ALNGILAALARAPPSAACGDAPALAIELFKRMDRWACPR----HSPPTIHTYNILIDCYR 187

Query: 216 KERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSL-KRMMERGCN 274
           +           G + ++ G  PD+     SY +      DG  +  + L   MME+G  
Sbjct: 188 RVHRPDLGLAIVGRL-LKNGLGPDDF----SYSLIYGFVKDGEVDKAHCLFLEMMEQGVL 242

Query: 275 PGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMK 334
           P +       +E    + +  AE I   MV   G  PD   Y+++I   C S     A +
Sbjct: 243 PKILICNSIIKELCKMKEMDKAESIVQKMVDS-GIAPDLFTYSLIIDGLCKSKAMDKAER 301

Query: 335 LLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK 376
           +L++MV  G  P+  TYN     L+ G   +  SG++NE V+
Sbjct: 302 VLEQMVEAGTRPNSITYN----SLIHG---YSISGMWNESVR 336


>gi|326525088|dbj|BAK07814.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 539

 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 76/317 (23%), Positives = 124/317 (39%), Gaps = 37/317 (11%)

Query: 84  AVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASVF 142
           A+ FF      L     P  +  ++DLL K+  F      +  M++ ++ +S     ++ 
Sbjct: 122 ALTFFHHVVPSLPADSLPALYAAMIDLLAKHHHFPLARHLLDEMRERSIPVSSQVILAII 181

Query: 143 SSYVVADRVKDAITTFDVMEQYGCK-HDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIK 201
             YV A    +A   F  ME+YG    D   L SLL A+ +     +A            
Sbjct: 182 RRYVRAGMSPEASELFRRMEEYGAGVPDPAVLASLLGALSKKRLAGEAQALFDSYKSVFP 241

Query: 202 PDNDTYAILLEGWEKERDVANAKKTFGEM--------------VIEVGWDPDNVPAYDSY 247
           PD   Y  L+  W +   +  A++ F EM              VI+  +    VP     
Sbjct: 242 PDVVLYTTLVHAWCRAGCLDKAEQVFAEMQQAGIMPNVYTYTSVIDAMYRAGQVPRAQEL 301

Query: 248 LITLLK-GCDGIYETVNSLKR-----------------MMERGCNPGMTFFKLAFE-ECL 288
           L  +++ GC     T N++ R                 M + GC+P +  +    E  C 
Sbjct: 302 LCQMMETGCPPNTATFNAIMRAHVKAGRSEQVLQVHNQMRQLGCDPDIITYNFLMETHCG 361

Query: 289 TGQ-NLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPD 347
            GQ NL  A  +   M+ + G  PD H +N M+ L   +    AA +L + M      P+
Sbjct: 362 KGQSNLDAAMKVLAKMIAK-GCIPDCHTFNPMLKLVLGTGNVEAARRLYERMQELQCKPN 420

Query: 348 IQTYNILFEFLVKGRKL 364
           + TYN+L +   K + +
Sbjct: 421 VVTYNLLMKLFNKEKSM 437



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 53/241 (21%), Positives = 101/241 (41%), Gaps = 16/241 (6%)

Query: 116 LFDAMWDAIKSMKKENVL----------SLATFASVFSSYVVADRVKDAITTFDVMEQYG 165
           + DAM+ A +  + + +L          + ATF ++  ++V A R +  +   + M Q G
Sbjct: 285 VIDAMYRAGQVPRAQELLCQMMETGCPPNTATFNAIMRAHVKAGRSEQVLQVHNQMRQLG 344

Query: 166 CKHDVFALNSLLSAICRDGKT-IDAWQ--FLRVVDGRIKPDNDTYAILLEGWEKERDVAN 222
           C  D+   N L+   C  G++ +DA      +++     PD  T+  +L+      +V  
Sbjct: 345 CDPDIITYNFLMETHCGKGQSNLDAAMKVLAKMIAKGCIPDCHTFNPMLKLVLGTGNVEA 404

Query: 223 AKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKL 282
           A++ + E + E+   P NV  Y+  L+ L      +   +   K M  +G  P +  +  
Sbjct: 405 ARRLY-ERMQELQCKP-NVVTYN-LLMKLFNKEKSMDMVLRIKKDMDAQGVEPNVNTYGA 461

Query: 283 AFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYN 342
             E      N R A      MV     +P   +Y+M++ L   + +     +L++ M   
Sbjct: 462 LIESFCGRGNWRRAHATLREMVEEKSLKPTKPVYDMVLMLLRKAGQLRKHEELVELMADR 521

Query: 343 G 343
           G
Sbjct: 522 G 522


>gi|449469290|ref|XP_004152354.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g52620-like [Cucumis sativus]
 gi|449484425|ref|XP_004156880.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g52620-like [Cucumis sativus]
          Length = 834

 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 82/334 (24%), Positives = 141/334 (42%), Gaps = 23/334 (6%)

Query: 133 LSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQF 192
           + + ++ ++    VVA  V  A+T  D M   G   D    N L++ + + GK   A   
Sbjct: 416 VDMISYGALIHGLVVAGEVDTALTIRDRMMNRGILPDANIYNVLMNGLFKKGKLSMAKVM 475

Query: 193 L-RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITL 251
           L  ++D  I PD   YA L++G+ +  ++  AKK F +++IE G DP  V  Y+  +   
Sbjct: 476 LTEMLDQNIAPDAFVYATLVDGFIRHGNLDEAKKLF-QLIIEKGLDP-GVVGYNVMIKGF 533

Query: 252 LKG--CDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGF 309
            K    D     ++ ++R       P +  F    +  +   N+     I+G MV +   
Sbjct: 534 SKSGMMDNAILCIDKMRRAHHV---PDIFTFSTIIDGYVKQHNMNAVLKIFGLMVKQ-NC 589

Query: 310 RPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASG 369
           +P+   Y  +I+ YC   ET  A KL   M  +G  P + TY+IL     K  KL +A  
Sbjct: 590 KPNVVTYTSLINGYCRKGETKMAEKLFSMMRSHGLKPSVVTYSILIGSFCKEAKLGKAVS 649

Query: 370 LFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIK--------------FWKYMIENHCS 415
            F  M+ N+   N       V  + ++    V+ +              F+  MI +  +
Sbjct: 650 YFELMLINKCTPNDAAFHYLVNGFTNTKATAVSREPNNLHENSRSMFEDFFSRMIGDGWT 709

Query: 416 DLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
             +   N ++  LC   M+  A++    M   G+
Sbjct: 710 QKAAAYNCILICLCQQRMVKTALQLRNKMLAFGL 743



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 64/132 (48%), Gaps = 2/132 (1%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKK-ENVLSLATFASVFSSYVVADRVKDAITTFDVM 161
            +N+++    K+ + D     I  M++  +V  + TF+++   YV    +   +  F +M
Sbjct: 525 GYNVMIKGFSKSGMMDNAILCIDKMRRAHHVPDIFTFSTIIDGYVKQHNMNAVLKIFGLM 584

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDV 220
            +  CK +V    SL++  CR G+T  A +   ++    +KP   TY+IL+  + KE  +
Sbjct: 585 VKQNCKPNVVTYTSLINGYCRKGETKMAEKLFSMMRSHGLKPSVVTYSILIGSFCKEAKL 644

Query: 221 ANAKKTFGEMVI 232
             A   F  M+I
Sbjct: 645 GKAVSYFELMLI 656



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 83/394 (21%), Positives = 147/394 (37%), Gaps = 65/394 (16%)

Query: 96  NDKHSPYAWNLVVDLLGKN-------CLFDAMWDAIKSMKKENVLSLATFASVFSSYVVA 148
           N   S YA N +++LL K+        L+D M D  +    +  +   T + +     + 
Sbjct: 164 NSLPSTYACNSLLNLLVKHRRIETAHQLYDEMID--RDNGDDICVDNYTTSIMVKGLCLK 221

Query: 149 DRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTY 207
            R++D I   +     GC  ++   N+L+   C+ G+   A++  + +  +   P   T+
Sbjct: 222 GRIEDGIKLIESRWGKGCVPNIVFYNTLIDGYCKKGEVESAYKLFKKLKMKGFIPTLQTF 281

Query: 208 AILLEGW---------------EKERDVA--------------------NAKKTFGEMVI 232
             L+ G+                K+R ++                     AK T  EM  
Sbjct: 282 GSLVNGFCKMGMFEAIDLLLLEMKDRGLSVNVQMYNNIIDARYKLGFDIKAKDTLKEMS- 340

Query: 233 EVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPG-MTFFKLAFEECLTGQ 291
           E   +PD V  Y++ LI        + E    L++ + RG  P  +T+  L    C  G+
Sbjct: 341 ENCCEPDLV-TYNT-LINHFCSRGEVEEAEKLLEQTIRRGLAPNKLTYTPLVHGYCKQGE 398

Query: 292 NLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTY 351
             +  +++        G   D   Y  +I     + E   A+ + D M+  G  PD   Y
Sbjct: 399 YTKATDYLIEMSTS--GLEVDMISYGALIHGLVVAGEVDTALTIRDRMMNRGILPDANIY 456

Query: 352 NILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYV-------AIK 404
           N+L   L K  KL  A  +  EM+        +N      VY    D ++       A K
Sbjct: 457 NVLMNGLFKKGKLSMAKVMLTEMLD-------QNIAPDAFVYATLVDGFIRHGNLDEAKK 509

Query: 405 FWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAV 438
            ++ +IE          N+++ G     M+  A+
Sbjct: 510 LFQLIIEKGLDPGVVGYNVMIKGFSKSGMMDNAI 543


>gi|357443403|ref|XP_003591979.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355481027|gb|AES62230.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 873

 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 89/370 (24%), Positives = 150/370 (40%), Gaps = 47/370 (12%)

Query: 118 DAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLL 177
           +   DA+K   + NV    TF  +   Y   +  ++A+   + M +YGC  D    N++L
Sbjct: 197 EVFQDAVKLGVQPNV---NTFNILIHGYCSDNNTEEALRLINQMGEYGCCPDNVTYNTVL 253

Query: 178 SAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGW 236
           +A+C+  +        L++ +  + P+ +TY IL+ G+ K + +  A +   E++   G 
Sbjct: 254 TALCKRSQLTQVRDLLLQMKNSGLFPNRNTYNILVHGYCKLKWLKEAAEVI-ELMTGKGM 312

Query: 237 DPDNVPAYDSYLITLLKG-CD--GIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQN- 292
            PD V  Y+    T+++G CD   I E V    +M      P +  +    + C   +  
Sbjct: 313 LPD-VWTYN----TMVRGLCDEGKIDEAVRLRDKMESFKLVPDVVTYNTLIDGCFEHRGS 367

Query: 293 -----------LRGAE---------FIWGAMVGRI-------------GFRPDTHMYNMM 319
                       RG +           W    G+I             GF PD   YN M
Sbjct: 368 DAAFKLVEEMKARGVKENGVTHNIMIKWFCTEGKIDEASNVMVKMVESGFSPDCFTYNTM 427

Query: 320 ISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNEN 379
           I+ YC + +   A K++DEM   G   D  T N L   +   ++L +A  L  +  K   
Sbjct: 428 INGYCKAGKMAEAYKMMDEMGRKGLKLDTFTLNTLLHTMCLEKQLDDAYTLTMKARKRGY 487

Query: 380 VLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVK 439
           +L+       +  Y   +    A+K W+ M E        T N ++ GLC      +AV 
Sbjct: 488 ILDEVTYGTLIMGYFKDEQADRALKLWEEMKETGIVATIITYNTIIRGLCLSGKTDQAVD 547

Query: 440 YAKGMAEKGI 449
               + EKG+
Sbjct: 548 KLNELLEKGL 557



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 78/325 (24%), Positives = 137/325 (42%), Gaps = 14/325 (4%)

Query: 142 FSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKT----IDAWQFLRVVD 197
            ++YV++ +       F+ M++   + ++   N+LL+A+ R   +         F   V 
Sbjct: 145 LAAYVISKQPHLGHQIFNKMKRLRFRPNLLTCNTLLNALVRSNSSHSLVFSREVFQDAVK 204

Query: 198 GRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDG 257
             ++P+ +T+ IL+ G+  + +   A +   +M  E G  PDNV  Y++ L  L K    
Sbjct: 205 LGVQPNVNTFNILIHGYCSDNNTEEALRLINQMG-EYGCCPDNV-TYNTVLTALCKRSQ- 261

Query: 258 IYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYN 317
           + +  + L +M   G  P    + +        + L+ A  +   M G+ G  PD   YN
Sbjct: 262 LTQVRDLLLQMKNSGLFPNRNTYNILVHGYCKLKWLKEAAEVIELMTGK-GMLPDVWTYN 320

Query: 318 MMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK- 376
            M+   C   +   A++L D+M      PD+ TYN L +   + R    A  L  EM   
Sbjct: 321 TMVRGLCDEGKIDEAVRLRDKMESFKLVPDVVTYNTLIDGCFEHRGSDAAFKLVEEMKAR 380

Query: 377 --NENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHML 434
              EN + H      ++ +        A      M+E+  S    T N ++ G C    +
Sbjct: 381 GVKENGVTHN---IMIKWFCTEGKIDEASNVMVKMVESGFSPDCFTYNTMINGYCKAGKM 437

Query: 435 PEAVKYAKGMAEKGIQVTPFALSKL 459
            EA K    M  KG+++  F L+ L
Sbjct: 438 AEAYKMMDEMGRKGLKLDTFTLNTL 462



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 82/354 (23%), Positives = 145/354 (40%), Gaps = 20/354 (5%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           T+ ++ + Y  A ++ +A    D M + G K D F LN+LL  +C + +  DA+      
Sbjct: 423 TYNTMINGYCKAGKMAEAYKMMDEMGRKGLKLDTFTLNTLLHTMCLEKQLDDAYTLTMKA 482

Query: 197 DGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITL-LKG 254
             R    D  TY  L+ G+ K+     A K + EM  E G     +  Y++ +  L L G
Sbjct: 483 RKRGYILDEVTYGTLIMGYFKDEQADRALKLWEEMK-ETGIVA-TIITYNTIIRGLCLSG 540

Query: 255 CDGIYETVNSLKRMMERGCNPGMTFFKLAFEE-CLTGQNLRGAEFIWGAMVGRIGFRPDT 313
                + V+ L  ++E+G  P  +   +     C  G   +  +F    MV     +PD 
Sbjct: 541 --KTDQAVDKLNELLEKGLVPDESTSNIIIHGYCWEGAVEKAFQF-HNKMVEH-SLKPDI 596

Query: 314 HMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNE 373
              N+++   C        + L +  +  G   D  TYNI+     K R+L +A  L  E
Sbjct: 597 FTCNILLRGLCREGMLEKGLTLFNTWISKGKPMDTVTYNIIISSFCKERRLEDAFDLMTE 656

Query: 374 M----VKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSE---TGNLL-- 424
           M    ++ +    +       +     +   +A+KF +   +    D S    T +++  
Sbjct: 657 MEGKNLEPDRYTYNAIVTGLTKAGRTEEAEKLALKFAEKGQQVKTQDTSPELGTSDMMYS 716

Query: 425 --VAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELL 476
             ++ LC      +A+K  +   +KG+ +  +   KL   L+K RK      LL
Sbjct: 717 EQISSLCTQGKYKDAMKLFQQAEQKGVSLNKYTYIKLMDGLLKRRKSFTTTSLL 770



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 86/396 (21%), Positives = 148/396 (37%), Gaps = 54/396 (13%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVM 161
            +N V+  L K      + D +  MK   +  +  T+  +   Y     +K+A    ++M
Sbjct: 248 TYNTVLTALCKRSQLTQVRDLLLQMKNSGLFPNRNTYNILVHGYCKLKWLKEAAEVIELM 307

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDG-RIKPDNDTYAILLEGWEKERDV 220
              G   DV+  N+++  +C +GK  +A +    ++  ++ PD  TY  L++G  + R  
Sbjct: 308 TGKGMLPDVWTYNTMVRGLCDEGKIDEAVRLRDKMESFKLVPDVVTYNTLIDGCFEHRGS 367

Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPG-MTF 279
             A K   EM    G   + V    + +I        I E  N + +M+E G +P   T+
Sbjct: 368 DAAFKLVEEMKAR-GVKENGVT--HNIMIKWFCTEGKIDEASNVMVKMVESGFSPDCFTY 424

Query: 280 FKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNE----------- 328
             +    C  G+     + +    +GR G + DT   N ++   C   +           
Sbjct: 425 NTMINGYCKAGKMAEAYKMM--DEMGRKGLKLDTFTLNTLLHTMCLEKQLDDAYTLTMKA 482

Query: 329 ------------------------TGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKL 364
                                      A+KL +EM   G    I TYN +   L    K 
Sbjct: 483 RKRGYILDEVTYGTLIMGYFKDEQADRALKLWEEMKETGIVATIITYNTIIRGLCLSGKT 542

Query: 365 WEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLL 424
            +A    NE+++   V +       +  Y        A +F   M+E+       T N+L
Sbjct: 543 DQAVDKLNELLEKGLVPDESTSNIIIHGYCWEGAVEKAFQFHNKMVEHSLKPDIFTCNIL 602

Query: 425 VAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLK 460
           + GLC            +GM EKG+ +    +SK K
Sbjct: 603 LRGLC-----------REGMLEKGLTLFNTWISKGK 627


>gi|297796945|ref|XP_002866357.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312192|gb|EFH42616.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 907

 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 79/336 (23%), Positives = 142/336 (42%), Gaps = 43/336 (12%)

Query: 150 RVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYA 208
           R K+ I     ME  GC  ++   N L+  +C+  K  +A    + + G+ +KPD  TY 
Sbjct: 245 RAKEMIVQ---MEATGCDVNIVPYNVLIDGLCKKQKVWEAVGIKKDLAGKELKPDVVTYC 301

Query: 209 ILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRM 268
            L+ G  K ++     +   EM + + + P    A  S L+  L+    + E +N +KR+
Sbjct: 302 TLVCGLCKVQEFEVGLEMIDEM-LRLRFSPSE--AAVSSLVEGLRKRGKVEEALNLVKRV 358

Query: 269 MERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNE 328
            E G +P +  +    +    G+N   AE ++  M G+IG  P+   Y+++I ++C   +
Sbjct: 359 AEFGVSPNIFVYNALIDSLCKGRNFDEAELLFDRM-GKIGLCPNDVTYSILIDMFCRRGK 417

Query: 329 TGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNE---NVLNHEN 385
              A+  L EM+  G  P +  YN L     K   +  A  L  EM+  +    V+ + +
Sbjct: 418 LDTALSFLGEMIDMGLKPSVYPYNSLINGHCKFGDISAAESLMAEMINKKLEPTVVTYTS 477

Query: 386 CRA----------AVRVYMDSDDPYV----------------------AIKFWKYMIENH 413
                        A+R+Y +     +                      A+K +  M E +
Sbjct: 478 LMGGYCSKGKINKALRLYHEMTGKGIVPSIYTFTTLLSGLFRAGLIRDAVKLFTEMAEWN 537

Query: 414 CSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
                 T N+++ G C+   + +A ++   M EKGI
Sbjct: 538 VKPNRVTYNVMIEGYCEEGNMSKAFEFLNEMIEKGI 573



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 76/349 (21%), Positives = 137/349 (39%), Gaps = 45/349 (12%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           S A  +S+        +V++A+     + ++G   ++F  N+L+ ++C+ G+  D  + L
Sbjct: 331 SEAAVSSLVEGLRKRGKVEEALNLVKRVAEFGVSPNIFVYNALIDSLCK-GRNFDEAELL 389

Query: 194 RVVDGRIK--PDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITL 251
               G+I   P++ TY+IL++ + +   +  A    GEM I++G  P   P Y+S    L
Sbjct: 390 FDRMGKIGLCPNDVTYSILIDMFCRRGKLDTALSFLGEM-IDMGLKPSVYP-YNS----L 443

Query: 252 LKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRP 311
           + G                                C  G ++  AE +   M+ +    P
Sbjct: 444 ING-------------------------------HCKFG-DISAAESLMAEMINK-KLEP 470

Query: 312 DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLF 371
               Y  ++  YC   +   A++L  EM   G  P I T+  L   L +   + +A  LF
Sbjct: 471 TVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIVPSIYTFTTLLSGLFRAGLIRDAVKLF 530

Query: 372 NEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDM 431
            EM +     N       +  Y +  +   A +F   MIE      + +   L+ GLC  
Sbjct: 531 TEMAEWNVKPNRVTYNVMIEGYCEEGNMSKAFEFLNEMIEKGIVPDTYSYRPLIHGLCLT 590

Query: 432 HMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKCK 480
               EA  +  G+ +   ++     + L        +E   EE L  C+
Sbjct: 591 GQASEAKVFVDGLHKGNCELNEICYTGLLHGFC---REGKLEEALSVCQ 636



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 76/359 (21%), Positives = 131/359 (36%), Gaps = 48/359 (13%)

Query: 132 VLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ 191
           V S+ TF ++ S    A  ++DA+  F  M ++  K +    N ++   C +G    A++
Sbjct: 504 VPSIYTFTTLLSGLFRAGLIRDAVKLFTEMAEWNVKPNRVTYNVMIEGYCEEGNMSKAFE 563

Query: 192 FL-RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLIT 250
           FL  +++  I PD  +Y  L+ G       + AK      V   G    N    +     
Sbjct: 564 FLNEMIEKGIVPDTYSYRPLIHGLCLTGQASEAK------VFVDGLHKGNCELNEICYTG 617

Query: 251 LLKG---------------------------CDGIYET-----------VNSLKRMMERG 272
           LL G                           C G+              +  LK M +RG
Sbjct: 618 LLHGFCREGKLEEALSVCQDMGLRGVDLDLVCYGVLIDGSLKHKDRKVFLGLLKEMHDRG 677

Query: 273 CNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAA 332
             P    +    +      + + A  IW  M+   G  P+   Y  +I+  C +     A
Sbjct: 678 LKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINE-GCVPNEVTYTAVINGLCKAGFVNEA 736

Query: 333 MKLLDEMVYNGAFPDIQTYNILFEFLVKG-RKLWEASGLFNEMVKNENVLNHENCRAAVR 391
             L  +M    + P+  TY    + L KG   + +A  L N ++K   + N       +R
Sbjct: 737 EILCSKMRPGNSVPNQVTYGCFLDILTKGVGDMKKAVELHNAILKGL-LANTATYNMLIR 795

Query: 392 VYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQ 450
            +        A +    MI +  S    T   +++ LC  + + +A++    M EKGI+
Sbjct: 796 GFCRQGRMEEASELITRMIGDGVSPDCITYTTMISELCRRNDVKKAIELWNSMTEKGIR 854



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 88/203 (43%), Gaps = 11/203 (5%)

Query: 152 KDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAIL 210
           K+A   +D+M   GC  +     ++++ +C+ G   +A     ++  G   P+  TY   
Sbjct: 699 KEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEAEILCSKMRPGNSVPNQVTYGCF 758

Query: 211 LEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG-C-DGIYETVNSL-KR 267
           L+   K   V + KK        +     N   Y+     L++G C  G  E  + L  R
Sbjct: 759 LDILTK--GVGDMKKAVELHNAILKGLLANTATYN----MLIRGFCRQGRMEEASELITR 812

Query: 268 MMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSN 327
           M+  G +P    +     E     +++ A  +W +M  + G RPD   YN +I   C + 
Sbjct: 813 MIGDGVSPDCITYTTMISELCRRNDVKKAIELWNSMTEK-GIRPDRVAYNTLIHGCCVAG 871

Query: 328 ETGAAMKLLDEMVYNGAFPDIQT 350
           E G A +L +EM+  G  P+ +T
Sbjct: 872 EMGKATELRNEMLRQGLKPNTET 894



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 90/219 (41%), Gaps = 7/219 (3%)

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQF--LRVVDGRIKPDNDTYAILLEGWEKER 218
           M   G K D     S++ A  + G   +A+    L + +G + P+  TY  ++ G  K  
Sbjct: 673 MHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCV-PNEVTYTAVINGLCKAG 731

Query: 219 DVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMT 278
            V  A+    +M    G    N   Y  +L  L KG   + + V     +++       T
Sbjct: 732 FVNEAEILCSKM--RPGNSVPNQVTYGCFLDILTKGVGDMKKAVELHNAILKGLLANTAT 789

Query: 279 FFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDE 338
           +  L    C  G+    +E I   M+G  G  PD   Y  MIS  C  N+   A++L + 
Sbjct: 790 YNMLIRGFCRQGRMEEASELIT-RMIGD-GVSPDCITYTTMISELCRRNDVKKAIELWNS 847

Query: 339 MVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKN 377
           M   G  PD   YN L        ++ +A+ L NEM++ 
Sbjct: 848 MTEKGIRPDRVAYNTLIHGCCVAGEMGKATELRNEMLRQ 886



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 69/161 (42%)

Query: 307 IGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWE 366
           +G RPD ++Y  +I   C   +   A +++ +M   G   +I  YN+L + L K +K+WE
Sbjct: 221 VGIRPDVYIYTGVIRSLCELKDLSRAKEMIVQMEATGCDVNIVPYNVLIDGLCKKQKVWE 280

Query: 367 ASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVA 426
           A G+  ++   E   +       V       +  V ++    M+    S      + LV 
Sbjct: 281 AVGIKKDLAGKELKPDVVTYCTLVCGLCKVQEFEVGLEMIDEMLRLRFSPSEAAVSSLVE 340

Query: 427 GLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKAR 467
           GL     + EA+   K +AE G+    F  + L   L K R
Sbjct: 341 GLRKRGKVEEALNLVKRVAEFGVSPNIFVYNALIDSLCKGR 381



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 75/378 (19%), Positives = 143/378 (37%), Gaps = 25/378 (6%)

Query: 84  AVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVF 142
           AVK F   A + N K +   +N++++   +       ++ +  M ++ ++    ++  + 
Sbjct: 526 AVKLFTEMA-EWNVKPNRVTYNVMIEGYCEEGNMSKAFEFLNEMIEKGIVPDTYSYRPLI 584

Query: 143 SSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IK 201
               +  +  +A    D + +  C+ +      LL   CR+GK  +A    + +  R + 
Sbjct: 585 HGLCLTGQASEAKVFVDGLHKGNCELNEICYTGLLHGFCREGKLEEALSVCQDMGLRGVD 644

Query: 202 PDNDTYAILLEGWEKERDVANAKKTFGEMVIEV---GWDPDNVPAYDSYLITLLKGCDGI 258
            D   Y +L++G  K +D    +K F  ++ E+   G  PD+V  Y S +    K  D  
Sbjct: 645 LDLVCYGVLIDGSLKHKD----RKVFLGLLKEMHDRGLKPDDV-IYTSMIDAKSKTGD-F 698

Query: 259 YETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNM 318
            E       M+  GC P    +            +  AE +   M      RP   + N 
Sbjct: 699 KEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEAEILCSKM------RPGNSVPNQ 752

Query: 319 MISLYCY----SNETGAAMKL--LDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFN 372
            ++  C+    +   G   K   L   +  G   +  TYN+L     +  ++ EAS L  
Sbjct: 753 -VTYGCFLDILTKGVGDMKKAVELHNAILKGLLANTATYNMLIRGFCRQGRMEEASELIT 811

Query: 373 EMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMH 432
            M+ +    +       +      +D   AI+ W  M E          N L+ G C   
Sbjct: 812 RMIGDGVSPDCITYTTMISELCRRNDVKKAIELWNSMTEKGIRPDRVAYNTLIHGCCVAG 871

Query: 433 MLPEAVKYAKGMAEKGIQ 450
            + +A +    M  +G++
Sbjct: 872 EMGKATELRNEMLRQGLK 889


>gi|222628664|gb|EEE60796.1| hypothetical protein OsJ_14385 [Oryza sativa Japonica Group]
          Length = 808

 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 61/244 (25%), Positives = 114/244 (46%), Gaps = 8/244 (3%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAW-QFLRV 195
            F  + ++Y     +  A+  F+ M+  G   D     +++S++CR G+  DA  +F  +
Sbjct: 348 VFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHM 407

Query: 196 VDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
           VD  + P    Y  L++G     ++  AK+   EM +     P  V  + S +  L K  
Sbjct: 408 VDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEM-MNKDIPPPGVKYFSSIINNLCK-- 464

Query: 256 DG-IYETVNSLKRMMERGCNPGMTFFKLAFEE-CLTGQNLRGAEFIWGAMVGRIGFRPDT 313
           +G + E  + +  M++ G  P +  F    E  CL G N+  A  +  AM   IG  P+ 
Sbjct: 465 EGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVG-NMEEAFALLDAM-ASIGIEPNC 522

Query: 314 HMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNE 373
           ++Y  ++  YC +     A+ +  +M++ G  P    Y+I+   L + R+   A  +F+E
Sbjct: 523 YIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLFQARRTTAAKKMFHE 582

Query: 374 MVKN 377
           M+++
Sbjct: 583 MIES 586



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 69/347 (19%), Positives = 135/347 (38%), Gaps = 55/347 (15%)

Query: 81  PGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFAS 140
           P P VK+F      L  +        ++D++            +++ ++ NV+   TF S
Sbjct: 448 PPPGVKYFSSIINNLCKEGRVAEGKDIMDMM------------VQTGQRPNVV---TFNS 492

Query: 141 VFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGR 199
           +   Y +   +++A    D M   G + + +   +L+   C++G+  DA    R ++   
Sbjct: 493 LMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKG 552

Query: 200 IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIY 259
           +KP +  Y+I+L G  + R    AKK F EM+     +     +  +Y            
Sbjct: 553 VKPTSVLYSIILHGLFQARRTTAAKKMFHEMI-----ESGTTVSIHTY------------ 595

Query: 260 ETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMM 319
                           G+    L    C    N+   +         +  + D   +N++
Sbjct: 596 ----------------GVVLGGLCRNNCTDEANMLLEKLF------AMNVKFDIITFNIV 633

Query: 320 ISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNEN 379
           IS          A +L D +   G  P+IQTY+++   L+K     EA  LF  + K+ +
Sbjct: 634 ISAMFKVGRRQEAKELFDAISTYGLVPNIQTYSMMITNLIKEESYEEADNLFISVEKSGH 693

Query: 380 VLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVA 426
             +       VR+ ++  +   A  +   + EN+ +  + T +LL +
Sbjct: 694 ASDSRLLNHIVRMLLNKAEVAKASNYLSIIGENNLTLEASTISLLAS 740



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 99/443 (22%), Positives = 177/443 (39%), Gaps = 93/443 (20%)

Query: 89  RWSAYQLNDKHSP---YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFA-SVFSS 144
           RW+      +HSP   + +N+++D   +    D +  AI     +N L    F+ S+   
Sbjct: 89  RWAC----PRHSPPTIHTYNILIDCYRRVHRPD-LGLAIVGRLLKNGLGPDDFSYSLIYG 143

Query: 145 YVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPD 203
           +V    V  A   F  M + G    +   NS++  +C+  +   A   + ++VD  I PD
Sbjct: 144 FVKDGEVDKAHCLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSGIAPD 203

Query: 204 NDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG--CDGIY-E 260
             TY+++++G  K + +  A++   +MV E G  P+++  Y+S    L+ G    G++ E
Sbjct: 204 LFTYSLIIDGLCKSKAMDKAERVLEQMV-EAGTRPNSI-TYNS----LIHGYSISGMWNE 257

Query: 261 TVNSLKRMMERGCNPGM----TFFKLAFE-------ECL--------------------- 288
           +V   K+M   G  P +    +F    F+       +C+                     
Sbjct: 258 SVRVFKQMSSCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLH 317

Query: 289 -----TGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNG 343
                T   L     I+  M+ + G  P+ H++N++I+ Y        AM + ++M   G
Sbjct: 318 GYATATDSCLADVHNIFNLMLTK-GIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKG 376

Query: 344 AFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK-------------NENVLNHENCRAA- 389
             PD  T+  +   L +  +L +A   FN MV               +   NH     A 
Sbjct: 377 MIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAK 436

Query: 390 --VRVYMDSDDPYVAIKFWKYMIENHCSD------------LSETG--------NLLVAG 427
             +   M+ D P   +K++  +I N C +            + +TG        N L+ G
Sbjct: 437 ELISEMMNKDIPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEG 496

Query: 428 LCDMHMLPEAVKYAKGMAEKGIQ 450
            C +  + EA      MA  GI+
Sbjct: 497 YCLVGNMEEAFALLDAMASIGIE 519



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 82/387 (21%), Positives = 162/387 (41%), Gaps = 19/387 (4%)

Query: 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDV 160
           + ++L++D L K+   D     ++ M +     +  T+ S+   Y ++    +++  F  
Sbjct: 205 FTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVFKQ 264

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDA-WQFLRVVDGRIKPDNDTYAILLEGWEKERD 219
           M   G    V   NS + A+ + G+T +A   F  +V    KPD  +Y+ +L G+    D
Sbjct: 265 MSSCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGYATATD 324

Query: 220 --VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNP-G 276
             +A+    F  M+ + G  P+      + LI     C  + + +   + M  +G  P  
Sbjct: 325 SCLADVHNIFNLMLTK-GIAPNK--HVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDT 381

Query: 277 MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLL 336
           +TF  +    C  G+ L  A   +  MV  IG  P   +Y  +I   C   E   A +L+
Sbjct: 382 VTFATVISSLCRIGR-LDDALHKFNHMV-DIGVPPSEAVYGCLIQGCCNHGELVKAKELI 439

Query: 337 DEMVYNG-AFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKN---ENVLNHENCRAAVRV 392
            EM+      P ++ ++ +   L K  ++ E   + + MV+     NV+   +      +
Sbjct: 440 SEMMNKDIPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCL 499

Query: 393 YMDSDDPYVAIKFWKYM-IENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQV 451
             + ++ +  +     + IE +C         LV G C    + +A+   + M  KG++ 
Sbjct: 500 VGNMEEAFALLDAMASIGIEPNCYIYGT----LVDGYCKNGRIDDALTVFRDMLHKGVKP 555

Query: 452 TPFALSKLKQILIKARKEAVYEELLKK 478
           T    S +   L +AR+    +++  +
Sbjct: 556 TSVLYSIILHGLFQARRTTAAKKMFHE 582


>gi|8493575|gb|AAF75798.1|AC011000_1 Contains multiple PPR Repeats PF|01535 [Arabidopsis thaliana]
          Length = 514

 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 87/364 (23%), Positives = 158/364 (43%), Gaps = 26/364 (7%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           ++ TF ++ +      RV  A+   D M + G + D     ++++ +C+ G T+ A   L
Sbjct: 9   NVVTFTTLMNGLCREGRVLQALALVDRMVEEGHQPDAVTYGTIVNGMCKLGDTVSALNML 68

Query: 194 RVVD-GRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
           R +D  +IK +   Y+ +++   K+ +   A+  F EM  E G  P NV  Y+     ++
Sbjct: 69  RKMDESQIKANVVIYSAIVDRLCKDGNHIKAQNIFTEMH-EKGIFP-NVLTYNC----MI 122

Query: 253 KG-CD-GIYETVNSLKR-MMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGF 309
            G C  G +     L R M+ER  +P +  F       +    + GAE ++  M+ R  F
Sbjct: 123 DGYCSYGKWSDAEQLLRDMIERNIDPDVVTFSALINAFVKEGKVSGAEELYREMLRRNIF 182

Query: 310 RPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRK------ 363
            P T  Y+ MI  +C  +    A  + D MV  G  PDI T N L +   + ++      
Sbjct: 183 -PTTITYSSMIDGFCKHSRLEDAKHMFDLMVSKGCSPDIITLNTLIDGCCRAKRHLIHGF 241

Query: 364 -----LWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLS 418
                +  A  LF EM+ N    +   C   +    ++     A++ +K   ++     +
Sbjct: 242 CQVGNVNVAQDLFQEMISNGVSPDIVTCNTLLAGLCENGKLEKALEMFKVFQKSKMDLDT 301

Query: 419 ETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKA----RKEAVYEE 474
            T N+++ G+C  + + EA      +   G++      + L  + +K     R E +Y E
Sbjct: 302 ATCNIIINGMCKGNKVDEAWDLFNSLPVNGVETDVVTYNILIGVFVKEGNFLRAEDIYLE 361

Query: 475 LLKK 478
           +L K
Sbjct: 362 MLCK 365



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 73/294 (24%), Positives = 127/294 (43%), Gaps = 16/294 (5%)

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERD 219
           M + GC  +V    +L++ +CR+G+ + A   + R+V+   +PD  TY  ++ G  K  D
Sbjct: 1   MVETGCPANVVTFTTLMNGLCREGRVLQALALVDRMVEEGHQPDAVTYGTIVNGMCKLGD 60

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTF 279
             +A     +M  +      NV  Y + +  L K  + I +  N    M E+G  P +  
Sbjct: 61  TVSALNMLRKM--DESQIKANVVIYSAIVDRLCKDGNHI-KAQNIFTEMHEKGIFPNVLT 117

Query: 280 FKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEM 339
           +    +   +      AE +   M+ R    PD   ++ +I+ +    +   A +L  EM
Sbjct: 118 YNCMIDGYCSYGKWSDAEQLLRDMIER-NIDPDVVTFSALINAFVKEGKVSGAEELYREM 176

Query: 340 VYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNE--------NVLNHENCRAA-- 389
           +    FP   TY+ + +   K  +L +A  +F+ MV           N L    CRA   
Sbjct: 177 LRRNIFPTTITYSSMIDGFCKHSRLEDAKHMFDLMVSKGCSPDIITLNTLIDGCCRAKRH 236

Query: 390 -VRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAK 442
            +  +    +  VA   ++ MI N  S    T N L+AGLC+   L +A++  K
Sbjct: 237 LIHGFCQVGNVNVAQDLFQEMISNGVSPDIVTCNTLLAGLCENGKLEKALEMFK 290



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 74/320 (23%), Positives = 136/320 (42%), Gaps = 21/320 (6%)

Query: 125 KSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRD 183
           + M + N+  +  T++S+   +    R++DA   FD+M   GC  D+  LN+L+   CR 
Sbjct: 174 REMLRRNIFPTTITYSSMIDGFCKHSRLEDAKHMFDLMVSKGCSPDIITLNTLIDGCCRA 233

Query: 184 GK----------TIDAWQ--FLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMV 231
            +           ++  Q  F  ++   + PD  T   LL G  +   +  A + F ++ 
Sbjct: 234 KRHLIHGFCQVGNVNVAQDLFQEMISNGVSPDIVTCNTLLAGLCENGKLEKALEMF-KVF 292

Query: 232 IEVGWDPDNVPAYDSYLITLLKG--CDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLT 289
            +   D D     +  +  + KG   D  ++  NSL      G    +  + +     + 
Sbjct: 293 QKSKMDLDTATC-NIIINGMCKGNKVDEAWDLFNSLPV---NGVETDVVTYNILIGVFVK 348

Query: 290 GQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQ 349
             N   AE I+  M+ + G  P T  YN M+  +C  N    A +++D MV  G  PD+ 
Sbjct: 349 EGNFLRAEDIYLEMLCK-GIIPSTVTYNSMVDGFCKQNRLEEARQMVDSMVSEGCSPDVV 407

Query: 350 TYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYM 409
           T++ L +   K  ++ +   LF+EM +   V +     A +  +    D   A   ++ M
Sbjct: 408 TFSTLIKGYCKAGRVDDGLELFSEMCQRGLVADTITYNALIHGFCKVGDLNGAQDIFEEM 467

Query: 410 IENHCSDLSETGNLLVAGLC 429
           + +     + T   ++AGLC
Sbjct: 468 VSSGVCPDTITFRSMLAGLC 487



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 62/253 (24%), Positives = 115/253 (45%), Gaps = 12/253 (4%)

Query: 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR 194
           + T  ++ +      +++ A+  F V ++     D    N +++ +C+  K  +AW    
Sbjct: 266 IVTCNTLLAGLCENGKLEKALEMFKVFQKSKMDLDTATCNIIINGMCKGNKVDEAWDLFN 325

Query: 195 V--VDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
              V+G ++ D  TY IL+  + KE +   A+  + EM+ + G  P  V  Y+S +    
Sbjct: 326 SLPVNG-VETDVVTYNILIGVFVKEGNFLRAEDIYLEMLCK-GIIPSTV-TYNSMVDGFC 382

Query: 253 KGCDGIYETVNSLKRMMERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRP 311
           K  + + E    +  M+  GC+P + TF  L    C  G+   G E ++  M  R G   
Sbjct: 383 KQ-NRLEEARQMVDSMVSEGCSPDVVTFSTLIKGYCKAGRVDDGLE-LFSEMCQR-GLVA 439

Query: 312 DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLF 371
           DT  YN +I  +C   +   A  + +EMV +G  PD  T+  +   L    +L +   + 
Sbjct: 440 DTITYNALIHGFCKVGDLNGAQDIFEEMVSSGVCPDTITFRSMLAGLCTKAELQKGLTML 499

Query: 372 NEMVKNENVLNHE 384
            ++ K+   ++HE
Sbjct: 500 EDLQKS---VDHE 509



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 79/369 (21%), Positives = 150/369 (40%), Gaps = 25/369 (6%)

Query: 98  KHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAIT 156
           K +   ++ +VD L K+       +    M ++ +  ++ T+  +   Y    +  DA  
Sbjct: 77  KANVVIYSAIVDRLCKDGNHIKAQNIFTEMHEKGIFPNVLTYNCMIDGYCSYGKWSDAEQ 136

Query: 157 TFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWE 215
               M +     DV   ++L++A  ++GK   A +  R +  R I P   TY+ +++G+ 
Sbjct: 137 LLRDMIERNIDPDVVTFSALINAFVKEGKVSGAEELYREMLRRNIFPTTITYSSMIDGFC 196

Query: 216 KERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC--------DGIYETVNS--- 264
           K   + +AK  F ++++  G  PD +      L TL+ GC         G  +  N    
Sbjct: 197 KHSRLEDAKHMF-DLMVSKGCSPDIIT-----LNTLIDGCCRAKRHLIHGFCQVGNVNVA 250

Query: 265 ---LKRMMERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMI 320
               + M+  G +P + T   L    C  G+  +  E        ++    DT   N++I
Sbjct: 251 QDLFQEMISNGVSPDIVTCNTLLAGLCENGKLEKALEMFKVFQKSKMDL--DTATCNIII 308

Query: 321 SLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENV 380
           +  C  N+   A  L + +  NG   D+ TYNIL    VK      A  ++ EM+    +
Sbjct: 309 NGMCKGNKVDEAWDLFNSLPVNGVETDVVTYNILIGVFVKEGNFLRAEDIYLEMLCKGII 368

Query: 381 LNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKY 440
            +     + V  +   +    A +    M+   CS    T + L+ G C    + + ++ 
Sbjct: 369 PSTVTYNSMVDGFCKQNRLEEARQMVDSMVSEGCSPDVVTFSTLIKGYCKAGRVDDGLEL 428

Query: 441 AKGMAEKGI 449
              M ++G+
Sbjct: 429 FSEMCQRGL 437


>gi|224067108|ref|XP_002302359.1| predicted protein [Populus trichocarpa]
 gi|222844085|gb|EEE81632.1| predicted protein [Populus trichocarpa]
          Length = 375

 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 88/342 (25%), Positives = 154/342 (45%), Gaps = 17/342 (4%)

Query: 125 KSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDG 184
           + ++KE    + T+  +  +      V  A+   D M   GCK DV   N L++ +C++G
Sbjct: 6   RQLEKECYPDVITYTILIEATCAESGVGQAMKLLDEMGSRGCKPDVVTYNVLVNGMCKEG 65

Query: 185 KTIDAWQFLRVVDG-RIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPA 243
           +  +A +FL  +     +P+  T+ I+L          +A+K   EMV + G  P  V  
Sbjct: 66  RLDEAIKFLNSMPSYGSQPNVITHNIILRSMCSTGRWMDAEKLLTEMVRK-GCSPSVVTF 124

Query: 244 YDSYLITLL--KGCDGIYETVNSLKRMMERGCNP-GMTFFKLAFEECLTGQNLRGAEFIW 300
             + LI  L  KG  G    ++ L++M   GC P  +++  L    C   +  R  +++ 
Sbjct: 125 --NILINFLCRKGLLG--RAIDILEKMPTHGCTPNSLSYNPLLHGFCKEKKMDRAIQYLE 180

Query: 301 GAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVK 360
             MV R G  PD   YN M++  C   +  AA++LL+++   G  P + TYN + + L K
Sbjct: 181 -IMVSR-GCYPDIVTYNTMLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSK 238

Query: 361 GRKLWEASGLFNEMVK---NENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDL 417
             K  +A  L +EM       +V+ + +  A +      ++   AIKF+  +        
Sbjct: 239 VGKTDQAVELLHEMRGKGLKPDVITYSSLIAGLSREGKVEE---AIKFFHDVEGFGVKPN 295

Query: 418 SETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKL 459
           + T N ++ GLC       A+ +   M  KG + T  + + L
Sbjct: 296 AFTYNSIMFGLCKAQQTDRAIDFLAYMISKGCKPTEVSYTIL 337



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 74/330 (22%), Positives = 132/330 (40%), Gaps = 47/330 (14%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSM----KKENVLSLATFASVFSSYVVADRVKDAITTF 158
            +N++V+ + K    D     + SM     + NV+   T   +  S     R  DA    
Sbjct: 53  TYNVLVNGMCKEGRLDEAIKFLNSMPSYGSQPNVI---THNIILRSMCSTGRWMDAEKLL 109

Query: 159 DVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKE 217
             M + GC   V   N L++ +CR G    A   L ++      P++ +Y  LL G+ KE
Sbjct: 110 TEMVRKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPTHGCTPNSLSYNPLLHGFCKE 169

Query: 218 RDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDG-IYETVNSLKRMMERGCNPG 276
           + +  A + + E+++  G  PD V  Y++ L  L K  DG +   V  L ++  +GC+P 
Sbjct: 170 KKMDRAIQ-YLEIMVSRGCYPDIV-TYNTMLTALCK--DGKVDAAVELLNQLSSKGCSPV 225

Query: 277 MTFFKLAFEEC---------------LTGQNLRGAEFIWGAMV------GRI-------- 307
           +  +    +                 + G+ L+     + +++      G++        
Sbjct: 226 LITYNTVIDGLSKVGKTDQAVELLHEMRGKGLKPDVITYSSLIAGLSREGKVEEAIKFFH 285

Query: 308 -----GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGR 362
                G +P+   YN ++   C + +T  A+  L  M+  G  P   +Y IL E +    
Sbjct: 286 DVEGFGVKPNAFTYNSIMFGLCKAQQTDRAIDFLAYMISKGCKPTEVSYTILIEGIANEG 345

Query: 363 KLWEASGLFNEMVKNENVLNHENCRAAVRV 392
              EA  L NE+     V      +  VR+
Sbjct: 346 LAKEALELLNELCSRGVVKKSSAEQVVVRL 375



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 46/192 (23%), Positives = 82/192 (42%), Gaps = 17/192 (8%)

Query: 265 LKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYC 324
           L R +E+ C P +  + +  E       +  A  +   M  R G +PD   YN++++  C
Sbjct: 4   LDRQLEKECYPDVITYTILIEATCAESGVGQAMKLLDEMGSR-GCKPDVVTYNVLVNGMC 62

Query: 325 YSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNE------ 378
                  A+K L+ M   G+ P++ T+NI+   +    +  +A  L  EMV+        
Sbjct: 63  KEGRLDEAIKFLNSMPSYGSQPNVITHNIILRSMCSTGRWMDAEKLLTEMVRKGCSPSVV 122

Query: 379 --NVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPE 436
             N+L +  CR  +           AI   + M  + C+  S + N L+ G C    +  
Sbjct: 123 TFNILINFLCRKGLLGR--------AIDILEKMPTHGCTPNSLSYNPLLHGFCKEKKMDR 174

Query: 437 AVKYAKGMAEKG 448
           A++Y + M  +G
Sbjct: 175 AIQYLEIMVSRG 186



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/221 (23%), Positives = 93/221 (42%), Gaps = 5/221 (2%)

Query: 231 VIEVGWDPDNVPAYDSYLITLLKGC--DGIYETVNSLKRMMERGCNPGM-TFFKLAFEEC 287
           V++   + +  P   +Y I +   C   G+ + +  L  M  RGC P + T+  L    C
Sbjct: 3   VLDRQLEKECYPDVITYTILIEATCAESGVGQAMKLLDEMGSRGCKPDVVTYNVLVNGMC 62

Query: 288 LTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPD 347
             G+     +F+    +   G +P+   +N+++   C +     A KLL EMV  G  P 
Sbjct: 63  KEGRLDEAIKFLNS--MPSYGSQPNVITHNIILRSMCSTGRWMDAEKLLTEMVRKGCSPS 120

Query: 348 IQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWK 407
           + T+NIL  FL +   L  A  +  +M  +    N  +    +  +        AI++ +
Sbjct: 121 VVTFNILINFLCRKGLLGRAIDILEKMPTHGCTPNSLSYNPLLHGFCKEKKMDRAIQYLE 180

Query: 408 YMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448
            M+   C     T N ++  LC    +  AV+    ++ KG
Sbjct: 181 IMVSRGCYPDIVTYNTMLTALCKDGKVDAAVELLNQLSSKG 221


>gi|115471383|ref|NP_001059290.1| Os07g0249100 [Oryza sativa Japonica Group]
 gi|33146978|dbj|BAC80051.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50508482|dbj|BAD30659.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610826|dbj|BAF21204.1| Os07g0249100 [Oryza sativa Japonica Group]
 gi|215767773|dbj|BAH00002.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 882

 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 97/396 (24%), Positives = 158/396 (39%), Gaps = 86/396 (21%)

Query: 132 VLSLATFASVFSSYVV-------ADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDG 184
           V+    F   FS+Y V       A R + A+     M++ G +  V    +L+ A+ R+G
Sbjct: 169 VMRRLKFRPAFSAYTVLIGALAEARRPERALELLRQMQEVGYEVGVHLFTTLVRALAREG 228

Query: 185 KTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPA 243
           +  DA   +  V G  ++PD   Y + ++ + K  +V  A K F E+  + G  PD+V +
Sbjct: 229 QVADALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMAWKFFHELKAQ-GLKPDDV-S 286

Query: 244 YDSYLITLLKG--------------------CDGIYETV--------------NSLKRMM 269
           Y S +  L K                     C   Y T+                L+R+ 
Sbjct: 287 YTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGSAGRFEDAYKLLERLR 346

Query: 270 ERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNET 329
           ERGC P +  F  +   CL G+  +  E +    V +    P++  YN++I + C     
Sbjct: 347 ERGCIPSVVSFN-SILTCL-GKKRKVDEALSLFEVMKKDAEPNSSTYNIIIDMLCLGGRV 404

Query: 330 GAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAA 389
             A ++LDEM +   FP++ T NI+ + L K RKL EA  +F          +   C   
Sbjct: 405 EEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESA-------SQRGCNPD 457

Query: 390 VRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
              Y                    CS        L+ GL     + EA +  + M + G 
Sbjct: 458 CVTY--------------------CS--------LIDGLGKKGQVDEAYRLFEKMLDAGH 489

Query: 450 QVTPFALSKL-KQILIKARKE---AVYEELLKK-CK 480
              P   + L +   I  RKE    +++EL+++ CK
Sbjct: 490 NANPVVYTSLIRNFFIHGRKEDGHKIFKELIRRGCK 525



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 85/383 (22%), Positives = 165/383 (43%), Gaps = 11/383 (2%)

Query: 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDV 160
           YA+N ++   G    F+  +  ++ +++   + S+ +F S+ +      +V +A++ F+V
Sbjct: 320 YAYNTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEV 379

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVD-GRIKPDNDTYAILLEGWEKERD 219
           M++   + +    N ++  +C  G+  +A++ L  ++   + P+  T  I+++   K R 
Sbjct: 380 MKK-DAEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARK 438

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTF 279
           +  A K F E   + G +PD V  Y S LI  L     + E     ++M++ G N     
Sbjct: 439 LEEAYKIF-ESASQRGCNPDCV-TYCS-LIDGLGKKGQVDEAYRLFEKMLDAGHNANPVV 495

Query: 280 FKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEM 339
           +                  I+  ++ R G +PD  + N  +     + E      + +++
Sbjct: 496 YTSLIRNFFIHGRKEDGHKIFKELIRR-GCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDI 554

Query: 340 VYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDP 399
              G  PD+++Y+IL   L K  +  E S +F+ M +    L+     A V  +  S   
Sbjct: 555 RSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKV 614

Query: 400 YVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKL 459
           + A +  + M E        T   +V GL  +  L EA    +    KGI++     S L
Sbjct: 615 HKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSL 674

Query: 460 KQILIKARK--EA--VYEELLKK 478
                K  +  EA  + EE++KK
Sbjct: 675 IDGFGKVGRIDEAYLILEEMMKK 697



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 63/277 (22%), Positives = 114/277 (41%), Gaps = 17/277 (6%)

Query: 114 NCLFDAMWDAIKSMKKENVLSLATFASVFSSYVV------ADRVKDAITTFDVMEQYGCK 167
           +C+F A       M  E++ S      V S  ++      A + ++    F  M+Q G  
Sbjct: 536 DCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFA 595

Query: 168 HDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVANAKKT 226
            D  A N+++   C+ GK   A++ L  +  + ++P   TY  +++G  K   +  A   
Sbjct: 596 LDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYML 655

Query: 227 FGEMV---IEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLA 283
           F E     IE+     NV  Y S LI        I E    L+ MM++G  P +  +   
Sbjct: 656 FEEAKSKGIEL-----NVVLYSS-LIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSL 709

Query: 284 FEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNG 343
            +  +  + +  A   + +M   +   P+T+ Y+++I+  C   +   A     +M   G
Sbjct: 710 LDALVKAEEINEALVCFQSM-KEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQG 768

Query: 344 AFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENV 380
             P++ TY  +   L K   + +A  LF     N  +
Sbjct: 769 LVPNVVTYTTMISGLAKVGNITDAYSLFERFKANGGI 805



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 62/284 (21%), Positives = 115/284 (40%), Gaps = 34/284 (11%)

Query: 107 VVDLLGKNC-------LFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFD 159
           ++D LGK         LF+ M DA  +           + S+  ++ +  R +D    F 
Sbjct: 464 LIDGLGKKGQVDEAYRLFEKMLDAGHNANP------VVYTSLIRNFFIHGRKEDGHKIFK 517

Query: 160 VMEQYGCKHDVFALNSLLSAICRDGKT---------IDAWQFLRVVDGRIKPDNDTYAIL 210
            + + GCK D+  LN+ +  + + G+          I ++ FL        PD  +Y+IL
Sbjct: 518 ELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFL--------PDVRSYSIL 569

Query: 211 LEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMME 270
           + G  K          F  M  + G+  D   AY++ +    K    +++    L+ M E
Sbjct: 570 IHGLTKAGQARETSNIFHAMK-QQGFALD-ARAYNAVVDGFCKS-GKVHKAYEILEEMKE 626

Query: 271 RGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETG 330
           +   P +  +    +       L  A  ++     + G   +  +Y+ +I  +       
Sbjct: 627 KCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSK-GIELNVVLYSSLIDGFGKVGRID 685

Query: 331 AAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
            A  +L+EM+  G  P++ T+N L + LVK  ++ EA   F  M
Sbjct: 686 EAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSM 729


>gi|242062032|ref|XP_002452305.1| hypothetical protein SORBIDRAFT_04g023380 [Sorghum bicolor]
 gi|241932136|gb|EES05281.1| hypothetical protein SORBIDRAFT_04g023380 [Sorghum bicolor]
          Length = 347

 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 83/329 (25%), Positives = 140/329 (42%), Gaps = 42/329 (12%)

Query: 158 FDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDG-RIKPDNDTYAILLEGWEK 216
            D M   GC  D+   N +L+ IC++G+  DA +FL  +     +P+  +Y I+L+G   
Sbjct: 4   LDEMRDKGCAPDIITYNVVLNGICQEGRVDDAMEFLENLPSYGGEPNTVSYNIVLKGLFT 63

Query: 217 ERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNP- 275
                +A+K   EM  +    P NV  ++  LI+ L     +   +  L+++ + GC P 
Sbjct: 64  AERWEDAEKLMEEMAHK--GCPPNVVTFN-MLISFLCRRGLVEPAMEVLEQIPKYGCTPN 120

Query: 276 GMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKL 335
            +++  L    C   +  +   F+   MV R G  PD   YN +++  C + E   A+ L
Sbjct: 121 SLSYNPLLHAFCKQKKMDKAMAFVE-LMVSR-GCYPDIVSYNTLLTALCRNGEVDVAIDL 178

Query: 336 LDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK---NENVLNHEN-----CR 387
           L ++   G  P + +YN + + L K  K  EA  L +EM+      +++ +       CR
Sbjct: 179 LHQLKGKGCSPVLISYNTVIDGLTKAGKTKEALELLDEMISKGLQPDIITYTTIASGLCR 238

Query: 388 -----AAVRVYMDSDD----PYV------------------AIKFWKYMIENHCSDLSET 420
                 A+R +    D    P V                  AI  + YMI N C     T
Sbjct: 239 EDKIEEAIRTFCKVQDMGIRPTVVLYNAILLGLCKRRETHNAIDLFSYMISNGCMPNEST 298

Query: 421 GNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
             +LV GL    ++ EA      +  +G+
Sbjct: 299 YTILVEGLAYEGLVKEARDLLGQLCSRGV 327



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/243 (23%), Positives = 109/243 (44%), Gaps = 5/243 (2%)

Query: 136 ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRV 195
            ++  V      A+R +DA    + M   GC  +V   N L+S +CR G    A + L  
Sbjct: 52  VSYNIVLKGLFTAERWEDAEKLMEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQ 111

Query: 196 VDG-RIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG 254
           +      P++ +Y  LL  + K++ +  A   F E+++  G  PD V +Y++ L  L + 
Sbjct: 112 IPKYGCTPNSLSYNPLLHAFCKQKKMDKAM-AFVELMVSRGCYPDIV-SYNTLLTALCRN 169

Query: 255 CDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTH 314
            + +   ++ L ++  +GC+P +  +    +        + A  +   M+ + G +PD  
Sbjct: 170 GE-VDVAIDLLHQLKGKGCSPVLISYNTVIDGLTKAGKTKEALELLDEMISK-GLQPDII 227

Query: 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
            Y  + S  C  ++   A++   ++   G  P +  YN +   L K R+   A  LF+ M
Sbjct: 228 TYTTIASGLCREDKIEEAIRTFCKVQDMGIRPTVVLYNAILLGLCKRRETHNAIDLFSYM 287

Query: 375 VKN 377
           + N
Sbjct: 288 ISN 290



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 61/243 (25%), Positives = 103/243 (42%), Gaps = 7/243 (2%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           ++ TF  + S       V+ A+   + + +YGC  +  + N LL A C+  K   A  F+
Sbjct: 85  NVVTFNMLISFLCRRGLVEPAMEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFV 144

Query: 194 RVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
            ++  R   PD  +Y  LL    +  +V  A     ++  + G  P  + +Y++ +  L 
Sbjct: 145 ELMVSRGCYPDIVSYNTLLTALCRNGEVDVAIDLLHQLKGK-GCSPVLI-SYNTVIDGLT 202

Query: 253 KGCDGIYETVNSLKRMMERGCNPG-MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRP 311
           K      E +  L  M+ +G  P  +T+  +A   C   +            V  +G RP
Sbjct: 203 KA-GKTKEALELLDEMISKGLQPDIITYTTIASGLCREDKIEEAIRTF--CKVQDMGIRP 259

Query: 312 DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLF 371
              +YN ++   C   ET  A+ L   M+ NG  P+  TY IL E L     + EA  L 
Sbjct: 260 TVVLYNAILLGLCKRRETHNAIDLFSYMISNGCMPNESTYTILVEGLAYEGLVKEARDLL 319

Query: 372 NEM 374
            ++
Sbjct: 320 GQL 322



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 66/293 (22%), Positives = 111/293 (37%), Gaps = 55/293 (18%)

Query: 197 DGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD 256
           D    PD  TY ++L G  +E  V +A + F E +   G +P+ V    SY I L     
Sbjct: 9   DKGCAPDIITYNVVLNGICQEGRVDDAME-FLENLPSYGGEPNTV----SYNIVL----K 59

Query: 257 GIY------ETVNSLKRMMERGCNPGMTFFKLAFE-ECLTGQNLRGAEFIWGAMVGRIGF 309
           G++      +    ++ M  +GC P +  F +     C  G      E +    + + G 
Sbjct: 60  GLFTAERWEDAEKLMEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVL--EQIPKYGC 117

Query: 310 RPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASG 369
            P++  YN ++  +C   +   AM  ++ MV  G +PDI +YN L   L           
Sbjct: 118 TPNSLSYNPLLHAFCKQKKMDKAMAFVELMVSRGCYPDIVSYNTLLTAL----------- 166

Query: 370 LFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLC 429
                           CR        + +  VAI     +    CS +  + N ++ GL 
Sbjct: 167 ----------------CR--------NGEVDVAIDLLHQLKGKGCSPVLISYNTVIDGLT 202

Query: 430 DMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKCKAH 482
                 EA++    M  KG+Q      + +   L   R++ + E +   CK  
Sbjct: 203 KAGKTKEALELLDEMISKGLQPDIITYTTIASGL--CREDKIEEAIRTFCKVQ 253



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 69/143 (48%), Gaps = 5/143 (3%)

Query: 93  YQLNDKH-SPY--AWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVA 148
           +QL  K  SP   ++N V+D L K        + +  M  + +   + T+ ++ S     
Sbjct: 180 HQLKGKGCSPVLISYNTVIDGLTKAGKTKEALELLDEMISKGLQPDIITYTTIASGLCRE 239

Query: 149 DRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTY 207
           D++++AI TF  ++  G +  V   N++L  +C+  +T +A   F  ++     P+  TY
Sbjct: 240 DKIEEAIRTFCKVQDMGIRPTVVLYNAILLGLCKRRETHNAIDLFSYMISNGCMPNESTY 299

Query: 208 AILLEGWEKERDVANAKKTFGEM 230
            IL+EG   E  V  A+   G++
Sbjct: 300 TILVEGLAYEGLVKEARDLLGQL 322


>gi|334184106|ref|NP_178323.3| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546751|sp|P0C894.1|PP143_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At2g02150
 gi|330250459|gb|AEC05553.1| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 761

 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 93/347 (26%), Positives = 150/347 (43%), Gaps = 34/347 (9%)

Query: 52  PTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLL 111
           P +E + D TL  +    V +VL      P  A KFF+WS  +   KHS  ++ +V  +L
Sbjct: 96  PGLEKLFDLTLAPI---WVPRVLVELKEDPKLAFKFFKWSMTRNGFKHSVESYCIVAHIL 152

Query: 112 -------------------GKNC-LFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRV 151
                                +C +FD +W    S +   V     F ++FS  +    +
Sbjct: 153 FCARMYYDANSVLKEMVLSKADCDVFDVLW----STRNVCVPGFGVFDALFSVLIDLGML 208

Query: 152 KDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYAIL 210
           ++AI  F  M+++       + N LL    + GKT D  +F + ++    +P   TY I+
Sbjct: 209 EEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYNIM 268

Query: 211 LEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMME 270
           ++   KE DV  A+  F EM    G  PD V  Y+S +I        + +TV   + M +
Sbjct: 269 IDCMCKEGDVEAARGLFEEMKFR-GLVPDTV-TYNS-MIDGFGKVGRLDDTVCFFEEMKD 325

Query: 271 RGCNPG-MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNET 329
             C P  +T+  L    C  G+   G EF +  M G  G +P+   Y+ ++  +C     
Sbjct: 326 MCCEPDVITYNALINCFCKFGKLPIGLEF-YREMKGN-GLKPNVVSYSTLVDAFCKEGMM 383

Query: 330 GAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK 376
             A+K   +M   G  P+  TY  L +   K   L +A  L NEM++
Sbjct: 384 QQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQ 430



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 85/388 (21%), Positives = 165/388 (42%), Gaps = 11/388 (2%)

Query: 98  KHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAIT 156
           + + + +N+++D + K    +A     + MK   ++    T+ S+   +    R+ D + 
Sbjct: 259 RPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVC 318

Query: 157 TFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWE 215
            F+ M+   C+ DV   N+L++  C+ GK     +F R + G  +KP+  +Y+ L++ + 
Sbjct: 319 FFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFC 378

Query: 216 KERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNP 275
           KE  +  A K + +M   VG  P N   Y S LI        + +       M++ G   
Sbjct: 379 KEGMMQQAIKFYVDMR-RVGLVP-NEYTYTS-LIDANCKIGNLSDAFRLGNEMLQVGVEW 435

Query: 276 GMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKL 335
            +  +    +     + ++ AE ++G M    G  P+   YN +I  +  +     A++L
Sbjct: 436 NVVTYTALIDGLCDAERMKEAEELFGKM-DTAGVIPNLASYNALIHGFVKAKNMDRALEL 494

Query: 336 LDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMD 395
           L+E+   G  PD+  Y      L    K+  A  + NEM +     N       +  Y  
Sbjct: 495 LNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFK 554

Query: 396 SDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEK-GIQVTPF 454
           S +P   +     M E        T  +L+ GLC   ++ +AV Y   ++   G+Q    
Sbjct: 555 SGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAA 614

Query: 455 ALSKLKQILIKARK----EAVYEELLKK 478
             + +   L K  +      ++E++++K
Sbjct: 615 IFTAMIDGLCKDNQVEAATTLFEQMVQK 642



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 68/160 (42%), Gaps = 7/160 (4%)

Query: 303 MVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGR 362
           M+G  G RP    YN+MI   C   +  AA  L +EM + G  PD  TYN + +   K  
Sbjct: 253 MIGA-GARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVG 311

Query: 363 KLWEASGLFNE---MVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSE 419
           +L +    F E   M    +V+ +    A +  +       + ++F++ M  N       
Sbjct: 312 RLDDTVCFFEEMKDMCCEPDVITY---NALINCFCKFGKLPIGLEFYREMKGNGLKPNVV 368

Query: 420 TGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKL 459
           + + LV   C   M+ +A+K+   M   G+    +  + L
Sbjct: 369 SYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSL 408



 Score = 51.6 bits (122), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 61/272 (22%), Positives = 111/272 (40%), Gaps = 8/272 (2%)

Query: 110 LLGKNCLFDAMWDAIK---SMKKENV-LSLATFASVFSSYVVADRVKDAITTFDVMEQYG 165
           L+  NC    + DA +    M +  V  ++ T+ ++      A+R+K+A   F  M+  G
Sbjct: 408 LIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAG 467

Query: 166 CKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVANAK 224
              ++ + N+L+    +      A + L  + GR IKPD   Y   + G      +  AK
Sbjct: 468 VIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAK 527

Query: 225 KTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAF 284
               EM  E G   +++  Y + +    K  +   E ++ L  M E      +  F +  
Sbjct: 528 VVMNEMK-ECGIKANSL-IYTTLMDAYFKSGNPT-EGLHLLDEMKELDIEVTVVTFCVLI 584

Query: 285 EECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGA 344
           +     + +  A   +  +    G + +  ++  MI   C  N+  AA  L ++MV  G 
Sbjct: 585 DGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGL 644

Query: 345 FPDIQTYNILFEFLVKGRKLWEASGLFNEMVK 376
            PD   Y  L +   K   + EA  L ++M +
Sbjct: 645 VPDRTAYTSLMDGNFKQGNVLEALALRDKMAE 676



 Score = 43.1 bits (100), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 43/193 (22%), Positives = 73/193 (37%), Gaps = 1/193 (0%)

Query: 273 CNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAA 332
           C PG   F   F   +    L  A   +  M  R    P T   N ++  +    +T   
Sbjct: 188 CVPGFGVFDALFSVLIDLGMLEEAIQCFSKM-KRFRVFPKTRSCNGLLHRFAKLGKTDDV 246

Query: 333 MKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRV 392
            +   +M+  GA P + TYNI+ + + K   +  A GLF EM     V +     + +  
Sbjct: 247 KRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDG 306

Query: 393 YMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVT 452
           +         + F++ M +  C     T N L+   C    LP  +++ + M   G++  
Sbjct: 307 FGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPN 366

Query: 453 PFALSKLKQILIK 465
             + S L     K
Sbjct: 367 VVSYSTLVDAFCK 379



 Score = 38.5 bits (88), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 42/201 (20%), Positives = 85/201 (42%), Gaps = 6/201 (2%)

Query: 149 DRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTY 207
           ++++ A    + M++ G K +     +L+ A  + G   +    L  + +  I+    T+
Sbjct: 521 EKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTF 580

Query: 208 AILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSL-K 266
            +L++G  K + V+ A   F  +  + G    N   + + +  L K  D   E   +L +
Sbjct: 581 CVLIDGLCKNKLVSKAVDYFNRISNDFGLQA-NAAIFTAMIDGLCK--DNQVEAATTLFE 637

Query: 267 RMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYS 326
           +M+++G  P  T +    +      N+  A  +   M   IG + D   Y  ++    + 
Sbjct: 638 QMVQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKM-AEIGMKLDLLAYTSLVWGLSHC 696

Query: 327 NETGAAMKLLDEMVYNGAFPD 347
           N+   A   L+EM+  G  PD
Sbjct: 697 NQLQKARSFLEEMIGEGIHPD 717


>gi|343887304|dbj|BAK61850.1| PPR containing protein [Citrus unshiu]
          Length = 567

 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 99/459 (21%), Positives = 194/459 (42%), Gaps = 65/459 (14%)

Query: 23  RSTFASHLDVPNLPPTIKTLCEIIA--NTPSPTVEDV----LDKTLIRVSQETVEQVLKF 76
           R +  +   +P+    + ++  +I   N  +P+ +++    LD+  + +    V +V+ +
Sbjct: 5   RRSLTNISQIPDQSILVTSITSVIQRLNPQNPSPKNISSQPLDQFSLCLGSNIVTKVI-Y 63

Query: 77  SYSHPGPAVKFFRWSAYQLND----KHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENV 132
             ++P  A+ FF W++    +     H+   +  + D+L  + L      A   +K  N 
Sbjct: 64  EQTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISI---AASLLKNSNK 120

Query: 133 LSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQF 192
           LS    + +  +Y     VK AI  F   +Q      +++ NSLL  + R      A +F
Sbjct: 121 LSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEF 180

Query: 193 LR--VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLIT 250
               V +  + PD  TY  ++ G+ K   + NAKK F  M ++      N+ AY++    
Sbjct: 181 FHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVMTVK-----PNLLAYNT---- 231

Query: 251 LLKGCDGIYETVNSLKRMMERGCNPG-MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGF 309
                            M+   C  G M   +L F+  ++G++                 
Sbjct: 232 -----------------MINGFCKKGDMESARLVFDRMMSGEDC---------------- 258

Query: 310 RPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASG 369
            P+   Y  +I  YC   E   A K ++EM+  G  P+  TYN +   L    ++ EA  
Sbjct: 259 LPNHVTYTTLIDGYCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKM 318

Query: 370 LFNEMVKN---ENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVA 426
           L  +M  N   +NV  H++    + V    D    A+ + + ++E + +   ++  +++ 
Sbjct: 319 LMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQ---AVGYLRNVMEANMNPDVKSYEVVIN 375

Query: 427 GLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIK 465
           G C +    EA+   K M  +G++ T F+ + + +IL++
Sbjct: 376 GFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVE 414



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/238 (23%), Positives = 106/238 (44%), Gaps = 6/238 (2%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-V 195
           T+ ++     +  RV +A      M   G K +V    S+L  +C  GK   A  +LR V
Sbjct: 299 TYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNV 358

Query: 196 VDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
           ++  + PD  +Y +++ G+ K      A     EM    G  P  V ++++    L++  
Sbjct: 359 MEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRAR-GLKP-TVFSFNAVFRILVENG 416

Query: 256 DGIYETVNSLKRMMERGCNPG-MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTH 314
           + +   +  LK+M +  C P  +++  +    C+    ++  E +   M+ R G   D  
Sbjct: 417 E-LDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMI-RSGHNLDFT 474

Query: 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFN 372
           MY+ ++  YC        M++  EMV       ++++++L + L    K+ EA  LF+
Sbjct: 475 MYSCLLKGYCEEGNVENVMQIAHEMVTKKYVIGLESFSVLVKQLCAKGKVTEAEKLFD 532



 Score = 42.7 bits (99), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 53/260 (20%), Positives = 108/260 (41%), Gaps = 10/260 (3%)

Query: 136 ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-R 194
            T+ ++   Y     +++A    + M   GC+ +    N+++  +C +G+  +A   + +
Sbjct: 263 VTYTTLIDGYCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAK 322

Query: 195 VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEM--VIEVGWDPDNVPAYDSYLITLL 252
           +     K +  T+  +L+G      V    +  G +  V+E   +PD V +Y+  +    
Sbjct: 323 MRLNGFKDNVSTHKSMLKGLCV---VGKFDQAVGYLRNVMEANMNPD-VKSYEVVINGFC 378

Query: 253 KGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD 312
           K      E ++ LK M  RG  P +  F   F   +    L  A  +   M  ++   P+
Sbjct: 379 K-IGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQM-PQMDCLPN 436

Query: 313 THMYNMMISLYCYSNETGAAMK-LLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLF 371
              YN +I   C +      ++ L+D M+ +G   D   Y+ L +   +   +     + 
Sbjct: 437 FVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIA 496

Query: 372 NEMVKNENVLNHENCRAAVR 391
           +EMV  + V+  E+    V+
Sbjct: 497 HEMVTKKYVIGLESFSVLVK 516


>gi|225430498|ref|XP_002283327.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic [Vitis vinifera]
 gi|296082142|emb|CBI21147.3| unnamed protein product [Vitis vinifera]
          Length = 1113

 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 79/315 (25%), Positives = 138/315 (43%), Gaps = 7/315 (2%)

Query: 65  VSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAI 124
           +S E V +VLK S S P  A  FF   A      H+    N V+++L  +   + M    
Sbjct: 87  MSSEEVYRVLK-SISDPNQAFSFFNSVAEMPRVIHTTETCNYVLEMLRAHRRVEDMVVVF 145

Query: 125 KSMKKENV-LSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRD 183
             M+K+ +  S+ T+ ++F    +   +++A    + M + G   + ++   L+  + + 
Sbjct: 146 NLMQKQIIKRSINTYLTIFKVLYIRGGLREAPVALEKMRKVGFVLNGYSYIGLIHLLLKS 205

Query: 184 GKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVP 242
           G   +A + + R+V   IKP   TY+ L+    K RD+        EM   +G  P N+ 
Sbjct: 206 GFCREALKVYRRMVSEGIKPSLKTYSALMVALGKRRDIETVMGLLQEME-SLGLRP-NIY 263

Query: 243 AYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGA 302
            + +  I +L     I E    LKRM + GC P +  + +  +       L  A+ ++  
Sbjct: 264 TF-TICIRILGRAGKIDEAYGILKRMDDAGCGPDVVTYTVLIDALCNAGKLNNAKELFLK 322

Query: 303 MVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGR 362
           M      +PD   Y  ++  +    +  A  +   EM  +G  PD+ T+ IL + L K  
Sbjct: 323 MKAS-SHKPDRVTYITLLDKFSDHGDLDAIKEFWSEMEADGYLPDVVTFTILIDALCKVG 381

Query: 363 KLWEASGLFNEMVKN 377
           K+ EA G  + M K 
Sbjct: 382 KVDEAFGTLDVMKKQ 396



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 86/333 (25%), Positives = 136/333 (40%), Gaps = 40/333 (12%)

Query: 148 ADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDT 206
           A ++ +A      M+  GC  DV     L+ A+C  GK  +A + FL++     KPD  T
Sbjct: 275 AGKIDEAYGILKRMDDAGCGPDVVTYTVLIDALCNAGKLNNAKELFLKMKASSHKPDRVT 334

Query: 207 YAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLK 266
           Y  LL+ +    D+   K+ + EM  + G+ PD V    + LI  L     + E   +L 
Sbjct: 335 YITLLDKFSDHGDLDAIKEFWSEMEAD-GYLPDVVTF--TILIDALCKVGKVDEAFGTLD 391

Query: 267 RMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYS 326
            M ++G  P +  +       L    L  A  ++ +M   +G     + Y + I  Y  S
Sbjct: 392 VMKKQGVAPNLHTYNTLICGLLRLNRLDEALELFNSM-ESLGLETTAYTYILFIDYYGKS 450

Query: 327 NETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK--------NE 378
            E+G A+K  ++M  NG  P+I   N     L +  +L EA   FN + K          
Sbjct: 451 GESGKAIKTFEKMKTNGIVPNIVACNASLYSLAEQGRLEEAKEFFNGLKKCGLAPDAITY 510

Query: 379 NVLNHENCRA-----AVRVYMDSD----DPYVAI------------------KFWKYMIE 411
           N+L     +A     A+++  + +    DP V I                  K ++ M E
Sbjct: 511 NILMRCYGKAGRVDDAIKLLSEMEENGCDPEVVIINSLIDTLYKADRVDEAWKMFQRMKE 570

Query: 412 NHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGM 444
              +    T N L+AGL     + EA    KGM
Sbjct: 571 MKLAPTVVTYNTLLAGLGKEGRVQEATALFKGM 603



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 73/275 (26%), Positives = 126/275 (45%), Gaps = 9/275 (3%)

Query: 105 NLVVDLLGKNCLFDAM--WDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVME 162
            L+  LL  N L +A+  +++++S+  E   +  T+      Y  +     AI TF+ M+
Sbjct: 407 TLICGLLRLNRLDEALELFNSMESLGLET--TAYTYILFIDYYGKSGESGKAIKTFEKMK 464

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDG-RIKPDNDTYAILLEGWEKERDVA 221
             G   ++ A N+ L ++   G+  +A +F   +    + PD  TY IL+  + K   V 
Sbjct: 465 TNGIVPNIVACNASLYSLAEQGRLEEAKEFFNGLKKCGLAPDAITYNILMRCYGKAGRVD 524

Query: 222 NAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFK 281
           +A K   EM  E G DP+ V   +S + TL K  D + E     +RM E    P +  + 
Sbjct: 525 DAIKLLSEME-ENGCDPE-VVIINSLIDTLYKA-DRVDEAWKMFQRMKEMKLAPTVVTYN 581

Query: 282 LAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVY 341
                      ++ A  ++  M+      P+T  +N ++   C + E   A+K+L  M  
Sbjct: 582 TLLAGLGKEGRVQEATALFKGMIAD-DCPPNTISFNTLLDCLCKNGEVDLALKMLFRMTE 640

Query: 342 NGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK 376
              FPD+ TYN +   L+K  ++  A  LF++M K
Sbjct: 641 MNCFPDVLTYNTVIYGLIKENRVNYAFWLFHQMKK 675



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 81/318 (25%), Positives = 133/318 (41%), Gaps = 14/318 (4%)

Query: 103  AWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVM 161
            A+N ++D L K  L +  W     MK       + T+     +   + ++K+    ++ M
Sbjct: 790  AYNSLIDGLLKARLTEMAWGLFYKMKNAGCTPDVFTYNLFLDALGKSGKIKELFDLYEEM 849

Query: 162  EQYGCKHDVFALNSLLSAICRDG---KTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKER 218
               GCK +    N ++  + +     K ID +  L  + G   P   TY  L++G  K  
Sbjct: 850  LFRGCKPNTITHNIVIFGLVKSNSLDKAIDLYYDL--MSGDFSPTPWTYGPLIDGLLKLG 907

Query: 219  DVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSL-KRMMERGCNPGM 277
             +  AK+ F EM ++ G  P N P Y+  +     G  G  ET   L +RM++ G  P +
Sbjct: 908  RLEEAKQFFEEM-LDYGCMP-NCPLYNILMNGF--GKQGDVETACELFRRMVKEGIRPDL 963

Query: 278  TFFKLAFE-ECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLL 336
              + +  +  C+ G+      +     +   G  PD   YN+MI+    S     A+ L 
Sbjct: 964  KSYSIMVDCLCMVGKVDDALHYFEELKLS--GLDPDLVCYNLMINGLGRSQRVEEALSLF 1021

Query: 337  DEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDS 396
            DEM   G  PD+ TYN L   L     + EA  ++ E+       N     A +R +  S
Sbjct: 1022 DEMRNRGITPDLYTYNALILNLGIAGMVEEAGKMYEELQLKGLEPNVFTYNALIRGHSMS 1081

Query: 397  DDPYVAIKFWKYMIENHC 414
             +P  A   +K M+   C
Sbjct: 1082 GNPDRAYAVYKKMMVGGC 1099



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 59/242 (24%), Positives = 105/242 (43%), Gaps = 5/242 (2%)

Query: 134  SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
            SL  + S+    + A   + A   F  M+  GC  DVF  N  L A+ + GK  + +   
Sbjct: 787  SLEAYNSLIDGLLKARLTEMAWGLFYKMKNAGCTPDVFTYNLFLDALGKSGKIKELFDLY 846

Query: 194  RVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
              +  R  KP+  T+ I++ G  K   +  A   + +++     D    P     LI  L
Sbjct: 847  EEMLFRGCKPNTITHNIVIFGLVKSNSLDKAIDLYYDLM---SGDFSPTPWTYGPLIDGL 903

Query: 253  KGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD 312
                 + E     + M++ GC P    + +         ++  A  ++  MV + G RPD
Sbjct: 904  LKLGRLEEAKQFFEEMLDYGCMPNCPLYNILMNGFGKQGDVETACELFRRMV-KEGIRPD 962

Query: 313  THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFN 372
               Y++M+   C   +   A+   +E+  +G  PD+  YN++   L + +++ EA  LF+
Sbjct: 963  LKSYSIMVDCLCMVGKVDDALHYFEELKLSGLDPDLVCYNLMINGLGRSQRVEEALSLFD 1022

Query: 373  EM 374
            EM
Sbjct: 1023 EM 1024



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 77/335 (22%), Positives = 134/335 (40%), Gaps = 47/335 (14%)

Query: 117 FDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNS 175
            DA+ +    M+ +  L  + TF  +  +     +V +A  T DVM++ G   ++   N+
Sbjct: 348 LDAIKEFWSEMEADGYLPDVVTFTILIDALCKVGKVDEAFGTLDVMKKQGVAPNLHTYNT 407

Query: 176 LLSAICRDGKTIDAWQFLRVVDG-RIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEV 234
           L+  + R  +  +A +    ++   ++    TY + ++ + K  +   A KTF +M    
Sbjct: 408 LICGLLRLNRLDEALELFNSMESLGLETTAYTYILFIDYYGKSGESGKAIKTFEKMKTN- 466

Query: 235 GWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLR 294
           G  P+ V             C+       SL  + E+G            EE        
Sbjct: 467 GIVPNIV------------ACNA------SLYSLAEQG----------RLEE-------- 490

Query: 295 GAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNIL 354
             EF  G  + + G  PD   YN+++  Y  +     A+KLL EM  NG  P++   N L
Sbjct: 491 AKEFFNG--LKKCGLAPDAITYNILMRCYGKAGRVDDAIKLLSEMEENGCDPEVVIINSL 548

Query: 355 FEFLVKGRKLWEASGLFN---EMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIE 411
            + L K  ++ EA  +F    EM     V+ +    A +       +   A   +K MI 
Sbjct: 549 IDTLYKADRVDEAWKMFQRMKEMKLAPTVVTYNTLLAGLGKEGRVQE---ATALFKGMIA 605

Query: 412 NHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAE 446
           + C   + + N L+  LC    +  A+K    M E
Sbjct: 606 DDCPPNTISFNTLLDCLCKNGEVDLALKMLFRMTE 640



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 87/399 (21%), Positives = 142/399 (35%), Gaps = 76/399 (19%)

Query: 105 NLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVMEQ 163
           N ++D L K    D  W   + MK+  +  ++ T+ ++ +      RV++A   F  M  
Sbjct: 546 NSLIDTLYKADRVDEAWKMFQRMKEMKLAPTVVTYNTLLAGLGKEGRVQEATALFKGMIA 605

Query: 164 YGCKHDVFALNSLLSAICRDGKTIDAWQFL----------------RVVDGRIK------ 201
             C  +  + N+LL  +C++G+   A + L                 V+ G IK      
Sbjct: 606 DDCPPNTISFNTLLDCLCKNGEVDLALKMLFRMTEMNCFPDVLTYNTVIYGLIKENRVNY 665

Query: 202 -------------PDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYL 248
                        PD  T   LL G  K+  + +A +   E V  VG   D     D   
Sbjct: 666 AFWLFHQMKKVIYPDYVTLCTLLPGVIKDGRIEDAFRVAKEFVHHVGDHADGSFWEDLMG 725

Query: 249 ITLLKG-------------CDGIYETVNSLKRMMERGCNPGM------TFFKLAFEECLT 289
             L++              C+ I E  + L  +++  C  G        F KL    C+T
Sbjct: 726 GILIEAEIGQSILFAESLVCNTICEDDSVLIPLVKFLCKHGKAVDAYNVFLKLTKSFCIT 785

Query: 290 GQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQ 349
                                P    YN +I     +  T  A  L  +M   G  PD+ 
Sbjct: 786 ---------------------PSLEAYNSLIDGLLKARLTEMAWGLFYKMKNAGCTPDVF 824

Query: 350 TYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYM 409
           TYN+  + L K  K+ E   L+ EM+      N       +   + S+    AI  +  +
Sbjct: 825 TYNLFLDALGKSGKIKELFDLYEEMLFRGCKPNTITHNIVIFGLVKSNSLDKAIDLYYDL 884

Query: 410 IENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448
           +    S    T   L+ GL  +  L EA ++ + M + G
Sbjct: 885 MSGDFSPTPWTYGPLIDGLLKLGRLEEAKQFFEEMLDYG 923



 Score = 40.8 bits (94), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 71/175 (40%), Gaps = 11/175 (6%)

Query: 266 KRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCY 325
           K++++R  N  +T FK+ +        LR A      M  ++GF  + + Y  +I L   
Sbjct: 150 KQIIKRSINTYLTIFKVLY----IRGGLREAPVALEKM-RKVGFVLNGYSYIGLIHLLLK 204

Query: 326 SNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK---NENVLN 382
           S     A+K+   MV  G  P ++TY+ L   L K R +    GL  EM       N+  
Sbjct: 205 SGFCREALKVYRRMVSEGIKPSLKTYSALMVALGKRRDIETVMGLLQEMESLGLRPNIYT 264

Query: 383 HENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEA 437
              C   +R+   +     A    K M +  C     T  +L+  LC+   L  A
Sbjct: 265 FTIC---IRILGRAGKIDEAYGILKRMDDAGCGPDVVTYTVLIDALCNAGKLNNA 316


>gi|449504220|ref|XP_004162287.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79080,
           chloroplastic-like [Cucumis sativus]
          Length = 566

 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 112/478 (23%), Positives = 192/478 (40%), Gaps = 61/478 (12%)

Query: 14  SPDPHNKRKRSTFASHLDVPNLPPTI--KTLCEIIANT-----PSPTVEDVLDKTLIRVS 66
           +P P   R+   F SH  +PN+      K   +++A+T     P  T+  + +  + ++ 
Sbjct: 13  NPSPETTRRGCGFFSH--IPNIQKLSLNKGFSKVLASTQITISPKDTIFTLPNWKIGKLD 70

Query: 67  QETVEQVLKFSYSHPGPAV-KFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIK 125
           Q++ E  L  ++ H    V K  +   +Q        A  L+ DL  K C        ++
Sbjct: 71  QKSKELRLNDAFFHLEFMVEKGQKPDVFQ--------ATQLLYDLC-KTCKMRKAIKVME 121

Query: 126 SMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDG 184
            M    ++   A++  + SS      V  A+   D ME+YG   +    NSL+  +C  G
Sbjct: 122 MMIGSGIIPDAASYTFLVSSLCRKGNVGYAMQLVDKMEEYGYPTNTATYNSLVRGLCMHG 181

Query: 185 KTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPA 243
               + Q L R++   + P+  TY+ LLE   KER    A K   E +I  G  P N+ +
Sbjct: 182 NLTQSLQLLDRLIQKGLVPNAYTYSFLLEAAYKERGADEASKLLDE-IIAKGGKP-NLVS 239

Query: 244 YDSYLITLLKGCDGIYETVNSLKRMM-ERGCNPGMTFFKLAFEE-CLTGQ----NLRGAE 297
           Y+  L  L K  +G  E    L R +  +G +P +  + +     C  G+    N+  AE
Sbjct: 240 YNVLLTGLCK--EGRTEDAMQLFRELPSKGFSPNVVSYNILLRSLCNEGRWEEANVLLAE 297

Query: 298 F----------IWGAMVG-------------------RIGFRPDTHMYNMMISLYCYSNE 328
                       +  ++G                   R  F+P    YN +I+  C   +
Sbjct: 298 MDGDERSPSTVTYNILIGSLTLHGRTEHALEVLEEMIRARFKPTASSYNPIIARLCKDRK 357

Query: 329 TGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRA 388
               +K LD+M+Y    P+  TYN +     +G  + EA  +   +   ++    E  + 
Sbjct: 358 VDLVVKCLDQMMYRHCNPNEGTYNAIATLCEEGM-VQEAFSIIQSLGNKQHFSTQEFYKI 416

Query: 389 AVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAE 446
            +       + Y A +    M +   +  S T + L+ GLC   ML EA++    M E
Sbjct: 417 VITSLCRKGNTYPAFQLLYEMTKYGFTPDSFTYSSLIRGLCMEGMLNEAIEIFSVMEE 474



 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 81/334 (24%), Positives = 140/334 (41%), Gaps = 41/334 (12%)

Query: 150 RVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYA 208
           R+ DA    + M + G K DVF    LL  +C+  K   A + + ++ G  I PD  +Y 
Sbjct: 77  RLNDAFFHLEFMVEKGQKPDVFQATQLLYDLCKTCKMRKAIKVMEMMIGSGIIPDAASYT 136

Query: 209 ILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRM 268
            L+    ++ +V  A +   +M  E G+ P N   Y+S L+  L     + +++  L R+
Sbjct: 137 FLVSSLCRKGNVGYAMQLVDKME-EYGY-PTNTATYNS-LVRGLCMHGNLTQSLQLLDRL 193

Query: 269 MERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNE 328
           +++G  P    +    E     +    A  +   ++ + G +P+   YN++++  C    
Sbjct: 194 IQKGLVPNAYTYSFLLEAAYKERGADEASKLLDEIIAK-GGKPNLVSYNVLLTGLCKEGR 252

Query: 329 TGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNE--------NV 380
           T  AM+L  E+   G  P++ +YNIL   L    +  EA+ L  EM  +E        N+
Sbjct: 253 TEDAMQLFRELPSKGFSPNVVSYNILLRSLCNEGRWEEANVLLAEMDGDERSPSTVTYNI 312

Query: 381 LN----------------HENCRAAVRVYMDSDDPYVA-----------IKFWKYMIENH 413
           L                  E  RA  +    S +P +A           +K    M+  H
Sbjct: 313 LIGSLTLHGRTEHALEVLEEMIRARFKPTASSYNPIIARLCKDRKVDLVVKCLDQMMYRH 372

Query: 414 CSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEK 447
           C+    T N  +A LC+  M+ EA    + +  K
Sbjct: 373 CNPNEGTYN-AIATLCEEGMVQEAFSIIQSLGNK 405



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 74/297 (24%), Positives = 120/297 (40%), Gaps = 9/297 (3%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           +L ++  + +      R +DA+  F  +   G   +V + N LL ++C +G+  +A   L
Sbjct: 236 NLVSYNVLLTGLCKEGRTEDAMQLFRELPSKGFSPNVVSYNILLRSLCNEGRWEEANVLL 295

Query: 194 RVVDGRIK-PDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
             +DG  + P   TY IL+          +A +   EM I   + P    +Y+  +  L 
Sbjct: 296 AEMDGDERSPSTVTYNILIGSLTLHGRTEHALEVLEEM-IRARFKP-TASSYNPIIARLC 353

Query: 253 KGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD 312
           K    +   V  L +MM R CNP    +      C  G        I    +G       
Sbjct: 354 KD-RKVDLVVKCLDQMMYRHCNPNEGTYNAIATLCEEGMVQEAFSIIQS--LGNKQHFST 410

Query: 313 THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFN 372
              Y ++I+  C    T  A +LL EM   G  PD  TY+ L   L     L EA  +F+
Sbjct: 411 QEFYKIVITSLCRKGNTYPAFQLLYEMTKYGFTPDSFTYSSLIRGLCMEGMLNEAIEIFS 470

Query: 373 EMVKNENV-LNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGL 428
             V  EN+ L+ EN  + +     S    +A+  ++ M+         T  +LV G+
Sbjct: 471 --VMEENIKLDTENYNSLILGCCKSRRTDLALDVFEIMVGKGYLANETTYTILVEGI 525



 Score = 42.7 bits (99), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 57/264 (21%), Positives = 107/264 (40%), Gaps = 14/264 (5%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           S  T+  +  S  +  R + A+   + M +   K    + N +++ +C+D K     + L
Sbjct: 306 STVTYNILIGSLTLHGRTEHALEVLEEMIRARFKPTASSYNPIIARLCKDRKVDLVVKCL 365

Query: 194 -RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
            +++     P+  TY  +    E+       ++ F   +I+   +  +    + Y I + 
Sbjct: 366 DQMMYRHCNPNEGTYNAIATLCEE----GMVQEAFS--IIQSLGNKQHFSTQEFYKIVIT 419

Query: 253 KGC--DGIYETVNSLKRMMERGCNP-GMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGF 309
             C     Y     L  M + G  P   T+  L    C+ G  L  A  I+  M   I  
Sbjct: 420 SLCRKGNTYPAFQLLYEMTKYGFTPDSFTYSSLIRGLCMEGM-LNEAIEIFSVMEENI-- 476

Query: 310 RPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASG 369
           + DT  YN +I   C S  T  A+ + + MV  G   +  TY IL E ++  +++  A+ 
Sbjct: 477 KLDTENYNSLILGCCKSRRTDLALDVFEIMVGKGYLANETTYTILVEGIIHEKEMDLATE 536

Query: 370 LFNEMVKNENVLNHENCRAAVRVY 393
           +  E+ +  +V+N       +  Y
Sbjct: 537 VLREL-QLRDVINQSTVERLIMQY 559


>gi|413948659|gb|AFW81308.1| hypothetical protein ZEAMMB73_549819 [Zea mays]
          Length = 795

 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 86/357 (24%), Positives = 151/357 (42%), Gaps = 17/357 (4%)

Query: 116 LFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNS 175
           +FD+M   ++  +K N      +  +   Y     + D     D+M + G   +  A N 
Sbjct: 327 VFDSM---VRKGQKPNS---TIYHILLHGYATKGALIDVRDLLDLMIRDGIPFEHRAFNI 380

Query: 176 LLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEV 234
           L+ A  + G    A   F  +    ++PD  +Y+ ++    K   V +A   F +MV E 
Sbjct: 381 LICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILCKTGRVEDAVYHFNQMVSE- 439

Query: 235 GWDPDNVPAYDSYLITLLKGCD-GIYETVNSLK-RMMERGCNPGMTFFKLAFEE-CLTGQ 291
           G  P N+ ++ S +  L   C  G ++ V  L   M+ RG +P   F     +  C  G+
Sbjct: 440 GLSP-NIISFTSLIHGL---CSIGEWKKVEELAFEMINRGIHPDAIFMNTIMDNLCKEGR 495

Query: 292 NLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTY 351
            +   +F    MV  IG +PD   YN +I  YC+  +   ++K LD MV  G  PD  TY
Sbjct: 496 VVEAQDFF--DMVIHIGVKPDVVSYNTLIDGYCFVGKMDESIKQLDRMVSIGLRPDSWTY 553

Query: 352 NILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIE 411
           N L     K  ++ +A  L+ EM + +           +     +     A + +  M++
Sbjct: 554 NSLLNGYFKNGRVEDALALYREMFRKDVKFCAITSNIMLHGLFQAGRIVAARELYMKMVD 613

Query: 412 NHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARK 468
                  ET N ++ GLC+   + EA++  + +  K  ++     S +   L+K  +
Sbjct: 614 RGTQLRIETYNTVLGGLCENSCVDEALRMFEDLRSKEFELDVRTFSIVINALLKVGR 670



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 64/234 (27%), Positives = 106/234 (45%), Gaps = 44/234 (18%)

Query: 148 ADRVKDAI-TTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL--RVVDG--RIKP 202
            +R  DA+   F  M + G   DVF+ N+L+  +C + K+ +A + L     DG     P
Sbjct: 139 GNRTDDAMDMVFRRMPELGYTPDVFSYNALIKGLCVEKKSQEALELLIHMTADGGYNCSP 198

Query: 203 DNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETV 262
           +  +Y  +++G+ KE +V  A   F EM+ + G  PD V  Y+S +  L K    + + V
Sbjct: 199 NVVSYNTVIDGFFKEGEVDKAYFLFHEMMGQ-GLPPD-VVTYNSLIDGLCKA-QAMDKAV 255

Query: 263 NSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISL 322
             L+ M ++G                                      PDT  YN+MI  
Sbjct: 256 AILQHMFDKGV------------------------------------MPDTRTYNIMIRG 279

Query: 323 YCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK 376
           YC   +   A++LL +M  +G  PD+ TY++L ++  K  +  EA  +F+ MV+
Sbjct: 280 YCSLGQLEEAVRLLKKMSGSGLQPDVVTYSLLIQYYCKIGRCAEARSVFDSMVR 333



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 102/504 (20%), Positives = 204/504 (40%), Gaps = 64/504 (12%)

Query: 21  RKRSTFASHLDVPNLPPTIKTLCEIIANTPSPTVEDVLDKTLIRVSQE---TVEQVLKFS 77
           +K S      DV      I+  C+I     + +V D    +++R  Q+   T+  +L   
Sbjct: 294 KKMSGSGLQPDVVTYSLLIQYYCKIGRCAEARSVFD----SMVRKGQKPNSTIYHILLHG 349

Query: 78  YSHPGPAVKFFRWSAYQLNDKHSPY---AWNLVVDLLGKNCLFDAMWDAIKSMKKENVL- 133
           Y+  G  +         + D   P+   A+N+++    K+   D    A   M++  +  
Sbjct: 350 YATKGALIDVRDLLDLMIRDG-IPFEHRAFNILICAYAKHGAVDKAMTAFTEMRQNGLRP 408

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDG--KTIDAWQ 191
            + ++++V        RV+DA+  F+ M   G   ++ +  SL+  +C  G  K ++   
Sbjct: 409 DVVSYSTVIHILCKTGRVEDAVYHFNQMVSEGLSPNIISFTSLIHGLCSIGEWKKVEELA 468

Query: 192 FLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITL 251
           F  +++  I PD      +++   KE  V  A+  F +MVI +G  PD V +Y+    TL
Sbjct: 469 F-EMINRGIHPDAIFMNTIMDNLCKEGRVVEAQDFF-DMVIHIGVKPD-VVSYN----TL 521

Query: 252 LKG---CDGIYETVNSLKRMMERGCNP--------------------GMTFFKLAFEE-- 286
           + G      + E++  L RM+  G  P                     +  ++  F +  
Sbjct: 522 IDGYCFVGKMDESIKQLDRMVSIGLRPDSWTYNSLLNGYFKNGRVEDALALYREMFRKDV 581

Query: 287 --CLTGQNLR-----------GAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAM 333
             C    N+             A  ++  MV R G +     YN ++   C ++    A+
Sbjct: 582 KFCAITSNIMLHGLFQAGRIVAARELYMKMVDR-GTQLRIETYNTVLGGLCENSCVDEAL 640

Query: 334 KLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVY 393
           ++ +++       D++T++I+   L+K  ++ EA  LF+ MV    V +       ++ +
Sbjct: 641 RMFEDLRSKEFELDVRTFSIVINALLKVGRIDEAKSLFSAMVLRGPVPDVITYSLMIKSH 700

Query: 394 MDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTP 453
           ++      +   +  M +N C+  S   N++V  L +   +  A  Y   + EK   +  
Sbjct: 701 IEEGLLEESDNLFLSMEKNGCAADSHMLNIIVRRLLEKGDVRRAGTYLTKIDEKNFSLE- 759

Query: 454 FALSKLKQILIKARKEAVYEELLK 477
              +    +LI    E  Y++ +K
Sbjct: 760 ---ASTAALLIPIVSEKKYQKEVK 780



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 62/247 (25%), Positives = 97/247 (39%), Gaps = 13/247 (5%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           ++ ++ +V   +     V  A   F  M   G   DV   NSL+  +C+      A   L
Sbjct: 199 NVVSYNTVIDGFFKEGEVDKAYFLFHEMMGQGLPPDVVTYNSLIDGLCKAQAMDKAVAIL 258

Query: 194 R-VVDGRIKPDNDTYAILLEGW----EKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYL 248
           + + D  + PD  TY I++ G+    + E  V   KK  G      G  PD V    S L
Sbjct: 259 QHMFDKGVMPDTRTYNIMIRGYCSLGQLEEAVRLLKKMSGS-----GLQPDVVTY--SLL 311

Query: 249 ITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIG 308
           I          E  +    M+ +G  P  T + +      T   L     +   M+ R G
Sbjct: 312 IQYYCKIGRCAEARSVFDSMVRKGQKPNSTIYHILLHGYATKGALIDVRDLLDLMI-RDG 370

Query: 309 FRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEAS 368
              +   +N++I  Y        AM    EM  NG  PD+ +Y+ +   L K  ++ +A 
Sbjct: 371 IPFEHRAFNILICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILCKTGRVEDAV 430

Query: 369 GLFNEMV 375
             FN+MV
Sbjct: 431 YHFNQMV 437


>gi|125548475|gb|EAY94297.1| hypothetical protein OsI_16066 [Oryza sativa Indica Group]
          Length = 602

 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 80/329 (24%), Positives = 138/329 (41%), Gaps = 12/329 (3%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           T+  +  +     +V+DA++  D M   GC  DV   N LL A C+      A + + ++
Sbjct: 169 TYNPLIHTLCERGQVRDALSVLDDMLCRGCAPDVVTYNILLEATCKGRGYRQAMELIDLM 228

Query: 197 DGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
                 P+N TY +L++G   E DV +A +    +    G  P  V  Y++ L  L    
Sbjct: 229 RAEGCTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSH-GCKPSTV-NYNTVLKGLCSA- 285

Query: 256 DGIYETVNSLKRMMERGCNPG-MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTH 314
           +   +    +  M+   C P   TF  + +  C  G   +  + +    + + G   +  
Sbjct: 286 ERWGDADELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLL--EKMSKHGCTANIV 343

Query: 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
            YN +I+  C       AM LL +M   G  PDI TYN L + L    +  +A  L + M
Sbjct: 344 TYNAIINGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAAQWVDAEELMDNM 403

Query: 375 VKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHML 434
            +N  + ++      +           AI+ +K M +  C+  S T + +++GL     L
Sbjct: 404 TQNGCLPDNVTFNTLIGFLCQKGLMVDAIEVFKQMPDKGCTPNSITYSTIISGLAKATKL 463

Query: 435 PEAVKYAKGMAEKGIQVTPFALSKLKQIL 463
            +A++    M  KG     F   K+ Q+L
Sbjct: 464 DQALELFNEMGHKG-----FNPDKIYQLL 487



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 73/298 (24%), Positives = 133/298 (44%), Gaps = 17/298 (5%)

Query: 104 WNLVVDLLGKNCLFDAMWDAIKSMKKENVLS-LATFASVFSSYVVADRVKDAITTFDVME 162
           +N+V+  L +  L       ++ M K    + + T+ ++ +       V  A+     M+
Sbjct: 310 FNVVIYSLCRKGLLQQAIQLLEKMSKHGCTANIVTYNAIINGLCEQRNVDGAMGLLSKMK 369

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERDVA 221
            YGCK D+   N+LL  +C   + +DA + +  +      PDN T+  L+    ++  + 
Sbjct: 370 SYGCKPDIVTYNTLLKGLCSAAQWVDAEELMDNMTQNGCLPDNVTFNTLIGFLCQKGLMV 429

Query: 222 NAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFK 281
           +A + F +M  + G  P+++  Y S +I+ L     + + +     M  +G NP   +  
Sbjct: 430 DAIEVFKQMP-DKGCTPNSI-TY-STIISGLAKATKLDQALELFNEMGHKGFNPDKIYQL 486

Query: 282 LAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVY 341
           LA  ECL   +           +   G  P T +YN ++   C + +T  A+ ++  MV 
Sbjct: 487 LA--ECLNDDDTIEEAIQTVRKLQDSGISPHTVLYNAILLGLCRNGKTEFAIDIMAYMVS 544

Query: 342 NGAFPDIQTYNILFE------FLVKGR----KLWEASGLFNEMVKNENVLNHENCRAA 389
           +G  PD  TY IL E      +L + R    KL     L N ++K+E +L  +N  A+
Sbjct: 545 SGCMPDDLTYVILIEGLAYEGYLNEARELLIKLCSRDVLVNSLIKSEALLLDQNIHAS 602



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 84/344 (24%), Positives = 145/344 (42%), Gaps = 24/344 (6%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           ++  + ++   Y  A R+ DA      M     + + +  N L+  +C  G+  DA   L
Sbjct: 134 TVVAYGALTDGYCRAGRLGDARRVVGGMP---VQPNAYTYNPLIHTLCERGQVRDALSVL 190

Query: 194 RVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
             +  R   PD  TY ILLE   K R    A +    M  E G  P+NV  Y+  L+  +
Sbjct: 191 DDMLCRGCAPDVVTYNILLEATCKGRGYRQAMELIDLMRAE-GCTPNNV-TYN-VLMDGM 247

Query: 253 KGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD 312
            G   + + +  L+ +   GC P    +    +   + +    A+ +   M+ R    P+
Sbjct: 248 CGEGDVDDALELLRNLPSHGCKPSTVNYNTVLKGLCSAERWGDADELVTEML-RENCPPN 306

Query: 313 THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFN 372
              +N++I   C       A++LL++M  +G   +I TYN +   L + R +  A GL +
Sbjct: 307 EATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTANIVTYNAIINGLCEQRNVDGAMGLLS 366

Query: 373 EM--------VKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLL 424
           +M        +   N L    C AA   ++D+++          M +N C   + T N L
Sbjct: 367 KMKSYGCKPDIVTYNTLLKGLCSAAQ--WVDAEE------LMDNMTQNGCLPDNVTFNTL 418

Query: 425 VAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARK 468
           +  LC   ++ +A++  K M +KG        S +   L KA K
Sbjct: 419 IGFLCQKGLMVDAIEVFKQMPDKGCTPNSITYSTIISGLAKATK 462


>gi|357155349|ref|XP_003577091.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g52620-like [Brachypodium distachyon]
          Length = 877

 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 83/345 (24%), Positives = 150/345 (43%), Gaps = 28/345 (8%)

Query: 124 IKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRD 183
           ++ M++ +   + TF ++    VVA +V +A+   + M       D    N L+S +C+ 
Sbjct: 458 VEMMERGHTPDVVTFGALIHGLVVAGQVSEALLVREKMAARQLLPDANIYNVLISGLCKK 517

Query: 184 GKTIDAWQFL--RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNV 241
            K + A + L   +++  + PD   Y  L++G+ +   +  A+K F E + + G  PD V
Sbjct: 518 -KMLPAARNLIEEMLEQNVHPDKYVYTTLIDGFIRNESLDEARKIF-EFMEQKGIHPDVV 575

Query: 242 PAYDSYLITLLKG-CD--GIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEF 298
             Y++    ++KG C    + E V  +  M + G  P    +           N+ GA  
Sbjct: 576 -GYNA----MIKGYCQFGMMNEAVECMSTMRKVGRIPDEFTYTTLIGGYAKQGNISGALS 630

Query: 299 IWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFL 358
           +   M+ R   +P+   Y+ +I+ YC   +T AA  L   M   G FP++ TY IL   L
Sbjct: 631 LLCDMMKR-RCQPNVVAYSSLINGYCKLGDTDAAECLFGSMESQGLFPNVITYTILIGSL 689

Query: 359 VKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVA---------------I 403
            K  K+  A+  F  M+ N+   N     + V    +S    ++               +
Sbjct: 690 FKKDKVVRAAMYFEYMLLNQCSPNDYTLHSLVTGLCNSMASIISSHCSSTVNLHGKGALL 749

Query: 404 KFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448
             ++ ++ + C   +   N ++  LC  +ML EA+     MA KG
Sbjct: 750 DIFRALVNDRCDPRNSAYNAIIFSLCIHNMLGEALDLKNKMANKG 794



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 56/273 (20%), Positives = 103/273 (37%), Gaps = 41/273 (15%)

Query: 104 WNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVME 162
           +  ++  LG+    + +   +  M++  +  ++  + SV  +         A+     M 
Sbjct: 332 YGTLMSWLGRKGDLEKIASLLSEMRERRLPPNVQIYNSVIDALCKCRSASQALVVLKQMF 391

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYAILLEGWEKERDVA 221
             GC  D    ++L+S +C++G+  +A + LR      + P+  +Y  L+ G+       
Sbjct: 392 AGGCDPDAITFSTLISGLCQEGRVQEAERLLRETTRWELNPNLSSYTSLIHGF------- 444

Query: 222 NAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFK 281
                 GE+++                              N L  MMERG  P +  F 
Sbjct: 445 ---CVRGEVIV----------------------------ASNLLVEMMERGHTPDVVTFG 473

Query: 282 LAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVY 341
                 +    +  A  +   M  R    PD ++YN++IS  C      AA  L++EM+ 
Sbjct: 474 ALIHGLVVAGQVSEALLVREKMAAR-QLLPDANIYNVLISGLCKKKMLPAARNLIEEMLE 532

Query: 342 NGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
               PD   Y  L +  ++   L EA  +F  M
Sbjct: 533 QNVHPDKYVYTTLIDGFIRNESLDEARKIFEFM 565



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 73/328 (22%), Positives = 132/328 (40%), Gaps = 57/328 (17%)

Query: 104 WNLVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASVFSSYVVADRVKDAITTFDVME 162
           +N+++  L K  +  A  + I+ M ++NV      + ++   ++  + + +A   F+ ME
Sbjct: 507 YNVLISGLCKKKMLPAARNLIEEMLEQNVHPDKYVYTTLIDGFIRNESLDEARKIFEFME 566

Query: 163 QYGCKHDVFALNSLLSAICRDG---KTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERD 219
           Q G   DV   N+++   C+ G   + ++    +R V GRI PD  TY  L+ G+ K+ +
Sbjct: 567 QKGIHPDVVGYNAMIKGYCQFGMMNEAVECMSTMRKV-GRI-PDEFTYTTLIGGYAKQGN 624

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYL------------------------------I 249
           ++ A     +M ++    P NV AY S +                               
Sbjct: 625 ISGALSLLCDM-MKRRCQP-NVVAYSSLINGYCKLGDTDAAECLFGSMESQGLFPNVITY 682

Query: 250 TLLKGC----DGIYETVNSLKRMMERGCNP----------GM--TFFKLAFEECLTGQNL 293
           T+L G     D +       + M+   C+P          G+  +   +    C +  NL
Sbjct: 683 TILIGSLFKKDKVVRAAMYFEYMLLNQCSPNDYTLHSLVTGLCNSMASIISSHCSSTVNL 742

Query: 294 RGAEFIWGAMVGRIGFR--PDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTY 351
            G   +       +  R  P    YN +I   C  N  G A+ L ++M   G  PD  T+
Sbjct: 743 HGKGALLDIFRALVNDRCDPRNSAYNAIIFSLCIHNMLGEALDLKNKMANKGYKPDSATF 802

Query: 352 -NILFEFLVKGRKLWEASGLFNEMVKNE 378
            ++L+ F   G+     + L NE  ++E
Sbjct: 803 LSLLYGFCSVGKSREWRTILPNEFQRDE 830



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 65/154 (42%), Gaps = 8/154 (5%)

Query: 287 CLTGQNLRGAEFI---WGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNG 343
           CL G   +G + I   WGA     G  P+   YN++I  YC   + G  + LL EM   G
Sbjct: 270 CLEGLVEKGLKLIEARWGA-----GCVPNAVFYNVLIDGYCRRGDVGRGILLLGEMEAKG 324

Query: 344 AFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAI 403
             P + TY  L  +L +   L + + L +EM +     N +   + +           A+
Sbjct: 325 LLPTVVTYGTLMSWLGRKGDLEKIASLLSEMRERRLPPNVQIYNSVIDALCKCRSASQAL 384

Query: 404 KFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEA 437
              K M    C   + T + L++GLC    + EA
Sbjct: 385 VVLKQMFAGGCDPDAITFSTLISGLCQEGRVQEA 418



 Score = 43.1 bits (100), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 40/190 (21%), Positives = 68/190 (35%), Gaps = 35/190 (18%)

Query: 311 PDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGL 370
           P+  +YN +I   C       A+ +L +M   G  PD  T++ L   L +  ++ EA  L
Sbjct: 362 PNVQIYNSVIDALCKCRSASQALVVLKQMFAGGCDPDAITFSTLISGLCQEGRVQEAERL 421

Query: 371 FNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIE-NHCSDLSETG-------- 421
             E  + E   N  +  + +  +    +  VA      M+E  H  D+   G        
Sbjct: 422 LRETTRWELNPNLSSYTSLIHGFCVRGEVIVASNLLVEMMERGHTPDVVTFGALIHGLVV 481

Query: 422 --------------------------NLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFA 455
                                     N+L++GLC   MLP A    + M E+ +    + 
Sbjct: 482 AGQVSEALLVREKMAARQLLPDANIYNVLISGLCKKKMLPAARNLIEEMLEQNVHPDKYV 541

Query: 456 LSKLKQILIK 465
            + L    I+
Sbjct: 542 YTTLIDGFIR 551


>gi|449435202|ref|XP_004135384.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g22960, mitochondrial-like [Cucumis sativus]
          Length = 717

 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 108/475 (22%), Positives = 180/475 (37%), Gaps = 73/475 (15%)

Query: 72  QVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLL-GKNCLFDAMW--DAIKSMK 128
           +VL      P  A++FFRW   Q + K S + +  ++D+L G + +  A W  + + S +
Sbjct: 90  RVLHSMRIRPRVALRFFRWVMAQPDFKESEFVFCAILDILVGNDLMHAAYWVMERVVSFE 149

Query: 129 KENVLSLATFASVFSSYVVADRVKDAI------------------------TTFDVMEQY 164
              V+ +     V    V    +++ +                          + +MEQ+
Sbjct: 150 MHGVVDVLIAGHVXCLLVFDKMIRNGLLPDVKNCNRILRVLRDENLLSKAKNVYGMMEQF 209

Query: 165 GCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVANA 223
           G K  V   N++L + C++G+   A + L  +  R   P++ TY +L+ G  K+ ++  A
Sbjct: 210 GIKPTVVTYNTMLDSYCKEGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSKKGELEQA 269

Query: 224 KKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD-GIY-ETVNSLKRMMERGCNPGM-TFF 280
           K    EM +  G    NV AY +Y   +   C  G++ E  + ++ M+ R   P + T+ 
Sbjct: 270 KGLIEEM-LNSGL---NVSAY-TYNPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLSTYN 324

Query: 281 KLAFEEC----LTGQNLRGAEFIWGAMVGRI----------------------------- 307
            L +  C    +TG  LR ++ +       I                             
Sbjct: 325 TLMYGLCKWVQVTGVRLRFSDMLKSKFTPDIVSFNSLLYGYCRTGCISEAFLLFDELKCR 384

Query: 308 GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEA 367
              P    YN +I   C      AA++L  EM   G FPDI TY IL     K   +  A
Sbjct: 385 DLVPTVITYNTLIHGLCMWGYLDAALRLKKEMTDQGLFPDIFTYTILVNGCFKLGYVSMA 444

Query: 368 SGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAG 427
            G FNEM+      +       +   M   D  VA    + M+         T N+ V  
Sbjct: 445 RGFFNEMLSKGLKPDRFAYNTRIVGEMKIADTSVAFSMQEEMLAAGFPPDVITYNVFVHA 504

Query: 428 LCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIK----ARKEAVYEELLKK 478
           LC      EA    + M   G+       + +    +K     +   V+ E+L K
Sbjct: 505 LCQQGNFEEACDLLENMVSDGLIPDHVTYTSIINGFVKNGHLRKAREVFNEMLSK 559



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 94/348 (27%), Positives = 141/348 (40%), Gaps = 61/348 (17%)

Query: 122 DAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAIC 181
           D +KS    +++S   F S+   Y     + +A   FD ++       V   N+L+  +C
Sbjct: 345 DMLKSKFTPDIVS---FNSLLYGYCRTGCISEAFLLFDELKCRDLVPTVITYNTLIHGLC 401

Query: 182 RDGKTIDAWQFLR--VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPD 239
             G  +DA   L+  + D  + PD  TY IL+ G  K   V+ A+  F EM+ + G  PD
Sbjct: 402 MWG-YLDAALRLKKEMTDQGLFPDIFTYTILVNGCFKLGYVSMARGFFNEMLSK-GLKPD 459

Query: 240 NVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFI 299
              AY++ ++  +K  D       S+   M+              EE L           
Sbjct: 460 RF-AYNTRIVGEMKIAD------TSVAFSMQ--------------EEMLAA--------- 489

Query: 300 WGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLV 359
                   GF PD   YN+ +   C       A  LL+ MV +G  PD  TY  +    V
Sbjct: 490 --------GFPPDVITYNVFVHALCQQGNFEEACDLLENMVSDGLIPDHVTYTSIINGFV 541

Query: 360 KGRKLWEASGLFNEM--------VKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIE 411
           K   L +A  +FNEM        V    VL H +   A +  +D     +A  ++  M+E
Sbjct: 542 KNGHLRKAREVFNEMLSKGVAPSVVTYTVLIHAH---AAKQMLD-----LAFMYFSKMLE 593

Query: 412 NHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKL 459
                   T N ++ GLC    + EA KY   M EKGI    F+ + L
Sbjct: 594 KSVPANVITYNAIINGLCMTRRMDEAYKYFDEMEEKGILPNKFSYTIL 641


>gi|356509834|ref|XP_003523650.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Glycine max]
          Length = 472

 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 96/425 (22%), Positives = 168/425 (39%), Gaps = 53/425 (12%)

Query: 79  SHPGPAVKFFRWSAYQLND----KHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLS 134
           ++P  A+ FF W++    +     H+P  +  + DLL  + LF     A   ++  N LS
Sbjct: 68  NNPQHALHFFNWASNPNPNPNNYSHTPLCYTAITDLLLSHSLFST---AFSLLRHSNRLS 124

Query: 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR 194
                   ++      ++ AI  F     +     VF+ N++L  + R  +   A     
Sbjct: 125 DNLVCRFINALGHRGDIRGAIHWFHQANTFTRGRCVFSCNAILGVLVRANRVNIAKAIYD 184

Query: 195 VV--DGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
            V  +  ++PD  TY  ++ G+ K   V +A+K F EM  E      N+  Y++      
Sbjct: 185 QVLAEAVLEPDVYTYTTMIRGFCKVGKVESARKVFDEMRCE-----PNIVTYNT------ 233

Query: 253 KGCDGIYETVNSLKRMMERGCNPGM-----TFFKLAFEECLTGQNLRGAEFIWGAMVGRI 307
                    V+  ++MM R    G+     T   L    C+ G++    + +   MV R 
Sbjct: 234 -------GEVDEARKMMSRMRLNGLKDDVATNTSLLKGFCIVGKSDEAVKHLR-EMVSR- 284

Query: 308 GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEA 367
           G +PD   Y ++++ YC   +   A+ LL EMV  G  P++ ++N +F  LV   K+ E 
Sbjct: 285 GMKPDVKAYGVVVNEYCKIRKPSEAVLLLREMVVRGVKPNVSSFNAVFRVLVDEGKIDEG 344

Query: 368 SGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETG------ 421
             L  +M K         C      Y         +K     +E   S++ + G      
Sbjct: 345 LHLLKQMPK-------MGCSPNFLSYCTVICGLCEVKGRMQQVEELVSNMLQNGHNLDAT 397

Query: 422 --NLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARK----EAVYEEL 475
             N L+ G C+      A K    + +K   +         ++L    K    E V EE+
Sbjct: 398 MYNCLLLGYCEDRDEEMAQKTVYDIMDKNFVINQDIFCTFVKLLCAKGKLKEAETVSEEM 457

Query: 476 LKKCK 480
            ++C+
Sbjct: 458 RRRCQ 462


>gi|302806388|ref|XP_002984944.1| hypothetical protein SELMODRAFT_121294 [Selaginella moellendorffii]
 gi|300147530|gb|EFJ14194.1| hypothetical protein SELMODRAFT_121294 [Selaginella moellendorffii]
          Length = 468

 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 90/438 (20%), Positives = 165/438 (37%), Gaps = 73/438 (16%)

Query: 82  GPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLS-LATFAS 140
           G A+  F+    +   +   + +N ++  L  +   +     +  M+ +N+ + + T++S
Sbjct: 62  GKALDLFQSMKREKRVEPDRWTYNTLISGLCSSGNTEGARKLLSEMRDKNIAANVFTYSS 121

Query: 141 VFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGR 199
           +  S V   + +++    + M   GC  DVFA N ++    R      A + +  +V+  
Sbjct: 122 IIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHMVESG 181

Query: 200 IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIY 259
            KPDN +Y IL+ G  K   +  + K   EM +       NV  + + +  L +  + + 
Sbjct: 182 YKPDNVSYHILIHGLAKIGKLDESLKILSEMAMRAAGYVPNVITFSTLIHGLCRTGE-LE 240

Query: 260 ETVNSLKRMMERGCNPGMTFFK-------------------------------LAFEECL 288
           + +     M+E GC P    +                                +A+   +
Sbjct: 241 KALEVFGSMLEAGCKPNKYTYTTLIAGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLI 300

Query: 289 TGQNLRG----AEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGA 344
            G   RG    AE ++  M G  G +P    +N +I  +C   + G A +L+ EM   G 
Sbjct: 301 AGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKGL 360

Query: 345 FPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIK 404
             D  TY IL   L +  KL EA  ++ +M + + +L                DP   + 
Sbjct: 361 AADTCTYRILIAGLSRATKLDEALEVYKQMREKKFLL----------------DPVSCVS 404

Query: 405 FWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILI 464
           F                   V GLC    + +A    +   + G    P     L + LI
Sbjct: 405 F-------------------VGGLCKTGNIDQAYAVFEATRKSGAVPNPETFRILSESLI 445

Query: 465 KARKEAVYEELLKKCKAH 482
           K  +    ++L++  KA 
Sbjct: 446 KLGRVEDAQKLMEPAKAR 463



 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 88/374 (23%), Positives = 160/374 (42%), Gaps = 34/374 (9%)

Query: 100 SPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLA--TFASVFSSYVVADRVKDAITT 157
           S   +N++++       F    D  +SMK+E  +     T+ ++ S    +   + A   
Sbjct: 44  SLVTYNVLINSRCNAGEFGKALDLFQSMKREKRVEPDRWTYNTLISGLCSSGNTEGARKL 103

Query: 158 FDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYAILLEGWEK 216
              M       +VF  +S++ ++ ++ K  ++++ L  ++     PD   +  +++G+ +
Sbjct: 104 LSEMRDKNIAANVFTYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFAR 163

Query: 217 ERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPG 276
             ++  A++ +  MV E G+ PDNV    SY I L+ G   I +   SLK + E      
Sbjct: 164 SNNMEKAREVYQHMV-ESGYKPDNV----SYHI-LIHGLAKIGKLDESLKILSEMAMRAA 217

Query: 277 ------MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETG 330
                 +TF  L    C TG+ L  A  ++G+M+   G +P+ + Y  +I+  C + +  
Sbjct: 218 GYVPNVITFSTLIHGLCRTGE-LEKALEVFGSML-EAGCKPNKYTYTTLIAGLCRAEKVI 275

Query: 331 AAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM---------VKNENVL 381
            A +L ++M      PD   YN L     K   + EA  L+ EM         +   N L
Sbjct: 276 QARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTL 335

Query: 382 NHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYA 441
               C+      +   +  VA    K +  + C     T  +L+AGL     L EA++  
Sbjct: 336 IDGFCKLG---KLGRANELVAEMGTKGLAADTC-----TYRILIAGLSRATKLDEALEVY 387

Query: 442 KGMAEKGIQVTPFA 455
           K M EK   + P +
Sbjct: 388 KQMREKKFLLDPVS 401



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 51/215 (23%), Positives = 96/215 (44%), Gaps = 9/215 (4%)

Query: 243 AYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWG 301
           AYD +++  L     + + +   + M    C P + T+  L    C  G+  +  + ++ 
Sbjct: 12  AYD-FVVQSLAKAGMLAQALEVFETMKSESCVPSLVTYNVLINSRCNAGEFGKALD-LFQ 69

Query: 302 AMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKG 361
           +M       PD   YN +IS  C S  T  A KLL EM       ++ TY+ + + LVK 
Sbjct: 70  SMKREKRVEPDRWTYNTLISGLCSSGNTEGARKLLSEMRDKNIAANVFTYSSIIKSLVKE 129

Query: 362 RKLWEASGLFNEMVK---NENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLS 418
            K  E+  +  EM+    N +V         ++ +  S++   A + +++M+E+     +
Sbjct: 130 AKPEESYKVLEEMMAAGCNPDVFAF---NGVMQGFARSNNMEKAREVYQHMVESGYKPDN 186

Query: 419 ETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTP 453
            + ++L+ GL  +  L E++K    MA +     P
Sbjct: 187 VSYHILIHGLAKIGKLDESLKILSEMAMRAAGYVP 221


>gi|357111163|ref|XP_003557384.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41720-like [Brachypodium distachyon]
          Length = 821

 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 72/279 (25%), Positives = 125/279 (44%), Gaps = 10/279 (3%)

Query: 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL---SLATFASVFSSYVVADRVKDAITTF 158
           +  N+V+  L K+  +    + + SM+++       + T+ S+  SY V  +V+D    F
Sbjct: 296 FTLNIVIHCLVKDGQYGEAIELLNSMREKRTQCPPDVVTYTSIMHSYYVCGKVEDCKAVF 355

Query: 159 DVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV-DGRIKPDNDTYAILLEGWEKE 217
           D+M   G K ++ + N+LL A    G   DA    +++    ++PD  +Y  LL  + + 
Sbjct: 356 DMMVAEGVKPNIVSYNALLGAYASRGMHADALGIFKLLKQNGLRPDVVSYTTLLNAYGRS 415

Query: 218 RDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMER-GCNPG 276
                A++ F EM  +    P N+ +Y++ +     G  G+++   SL   ME+ G  P 
Sbjct: 416 GQPEKAREAFKEMR-KNSCRP-NIVSYNALIDAY--GSAGMFKEAISLLHEMEKDGIPPD 471

Query: 277 MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLL 336
           +         C   + +   + I  A   R G + +   YN  I  Y    + G A++L 
Sbjct: 472 VVSISTLLTACGRCRQITKIDTILEAAKSR-GIKLNIVCYNSGIGSYLNFGDYGKALELY 530

Query: 337 DEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
             M+ +   PD  TYNIL   L K  K  E+   F +MV
Sbjct: 531 AVMMASNVNPDAVTYNILISGLCKVGKYAESLKFFEDMV 569



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 89/396 (22%), Positives = 171/396 (43%), Gaps = 20/396 (5%)

Query: 77  SYSHPGPAVKFFRWSAYQLND------KHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKE 130
           S  H       +RW+   ++D        S   +N V++  G    +    +  K M + 
Sbjct: 195 SLIHAHARAGQWRWAINIMDDMLRAAIPPSRTTYNNVINACGAAGNWKKALELCKKMTRN 254

Query: 131 NV-LSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDA 189
            V   L T   V S++    +   AI  F++M+      D F LN ++  + +DG+  +A
Sbjct: 255 GVGPDLVTHNIVLSAFKNGSQYSKAIAYFEMMKGANIAPDTFTLNIVIHCLVKDGQYGEA 314

Query: 190 WQFL---RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDS 246
            + L   R    +  PD  TY  ++  +     V + K  F  MV E G  P N+ +Y++
Sbjct: 315 IELLNSMREKRTQCPPDVVTYTSIMHSYYVCGKVEDCKAVFDMMVAE-GVKP-NIVSYNA 372

Query: 247 YLITLLKGCDGIY-ETVNSLKRMMERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMV 304
            L        G++ + +   K + + G  P + ++  L      +GQ  +  E      +
Sbjct: 373 LLGAY--ASRGMHADALGIFKLLKQNGLRPDVVSYTTLLNAYGRSGQPEKAREAF--KEM 428

Query: 305 GRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKL 364
            +   RP+   YN +I  Y  +     A+ LL EM  +G  PD+ + + L     + R++
Sbjct: 429 RKNSCRPNIVSYNALIDAYGSAGMFKEAISLLHEMEKDGIPPDVVSISTLLTACGRCRQI 488

Query: 365 WEASGLFNEMVKNENV-LNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNL 423
            +   +  E  K+  + LN     + +  Y++  D   A++ +  M+ ++ +  + T N+
Sbjct: 489 TKIDTIL-EAAKSRGIKLNIVCYNSGIGSYLNFGDYGKALELYAVMMASNVNPDAVTYNI 547

Query: 424 LVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKL 459
           L++GLC +    E++K+ + M +  I +T    S L
Sbjct: 548 LISGLCKVGKYAESLKFFEDMVDLRIPLTKEVYSSL 583



 Score = 46.6 bits (109), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 77/342 (22%), Positives = 127/342 (37%), Gaps = 17/342 (4%)

Query: 149 DRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQF-LRVVD----GRIKPD 203
            ++  A   F  M+++ CK D    NSL+ A  R G+    W++ + ++D      I P 
Sbjct: 169 SQIDQARGLFFEMQEWRCKPDADIYNSLIHAHARAGQ----WRWAINIMDDMLRAAIPPS 224

Query: 204 NDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVN 263
             TY  ++       +   A +   +M    G  PD V  ++  L     G    Y    
Sbjct: 225 RTTYNNVINACGAAGNWKKALELCKKMT-RNGVGPDLV-THNIVLSAFKNGSQ--YSKAI 280

Query: 264 SLKRMMERGCNPGMTFFKLAFE-ECLT--GQNLRGAEFIWGAMVGRIGFRPDTHMYNMMI 320
           +   MM +G N     F L     CL   GQ     E +      R    PD   Y  ++
Sbjct: 281 AYFEMM-KGANIAPDTFTLNIVIHCLVKDGQYGEAIELLNSMREKRTQCPPDVVTYTSIM 339

Query: 321 SLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENV 380
             Y    +      + D MV  G  P+I +YN L           +A G+F  + +N   
Sbjct: 340 HSYYVCGKVEDCKAVFDMMVAEGVKPNIVSYNALLGAYASRGMHADALGIFKLLKQNGLR 399

Query: 381 LNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKY 440
            +  +    +  Y  S  P  A + +K M +N C     + N L+       M  EA+  
Sbjct: 400 PDVVSYTTLLNAYGRSGQPEKAREAFKEMRKNSCRPNIVSYNALIDAYGSAGMFKEAISL 459

Query: 441 AKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKCKAH 482
              M + GI     ++S L     + R+    + +L+  K+ 
Sbjct: 460 LHEMEKDGIPPDVVSISTLLTACGRCRQITKIDTILEAAKSR 501



 Score = 45.1 bits (105), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 5/91 (5%)

Query: 133 LSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQF 192
           L+   ++S+  SYV   ++ +A +TF  M++ GC  DV    +++ A   DG   +AW  
Sbjct: 575 LTKEVYSSLICSYVKQGKLTEAESTFSSMKESGCLPDVLTYTAMIEAYNDDGSWRNAWDL 634

Query: 193 LRVVDGR-IKPDNDTYAILLE----GWEKER 218
            + ++G  ++PD    + L+E    G + ER
Sbjct: 635 FKEMEGNTVQPDAIICSSLMEALNRGSQHER 665


>gi|356561716|ref|XP_003549125.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62930,
           chloroplastic-like [Glycine max]
          Length = 556

 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 64/247 (25%), Positives = 116/247 (46%), Gaps = 8/247 (3%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           T  ++     +   VK A+   D +     + D  +  +L++ +C+ G+T  A Q +R +
Sbjct: 141 TLTTLIKGLCLRGEVKKALKFHDDVVALEFQLDRISYGTLINGLCKIGETKAAIQLMRNL 200

Query: 197 DGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITL-LKG 254
           + R IKPD   Y I+++   K + V  A   + EM  +  +   NV  Y + +    + G
Sbjct: 201 EERSIKPDVVMYNIIIDSLCKNKLVGEACNLYSEMNAKQIYP--NVVTYTTLIYGFCIMG 258

Query: 255 CDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTH 314
           C  + E V  L  M  +  NP +  F +  +       ++ A+ +   M+ +   +PD  
Sbjct: 259 C--LIEAVALLNEMKLKNINPDVYTFSILIDALGKEGKMKAAKIVLAVMM-KAYVKPDVV 315

Query: 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
            YN ++  Y   NE   A  + + M  +G  P +Q+Y I+ + L K + + EA  LF EM
Sbjct: 316 TYNSLVDGYFLVNEVKHAKYVFNSMAQSGVTPGVQSYTIMIDGLCKTKMVDEAISLFEEM 375

Query: 375 VKNENVL 381
            K++NV+
Sbjct: 376 -KHKNVI 381



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 63/276 (22%), Positives = 122/276 (44%), Gaps = 6/276 (2%)

Query: 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDV 160
           Y +++++D LGK     A    +  M K  V   + T+ S+   Y + + VK A   F+ 
Sbjct: 280 YTFSILIDALGKEGKMKAAKIVLAVMMKAYVKPDVVTYNSLVDGYFLVNEVKHAKYVFNS 339

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERD 219
           M Q G    V +   ++  +C+     +A      +  + + P+  T+  L++G  K   
Sbjct: 340 MAQSGVTPGVQSYTIMIDGLCKTKMVDEAISLFEEMKHKNVIPNTITFNSLIDGLCKSGR 399

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTF 279
           +A       +M         +V  Y S +  L K C  + + +   K+M+ +   P M  
Sbjct: 400 IAYVWDLVDKM--RDRSQLADVITYSSLIDALCKNCH-LDQAIALFKKMITQEIQPDMYT 456

Query: 280 FKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEM 339
           + +  +    G  L+ A+ ++  ++ + G+  D   Y +MIS +C +     A+ LL +M
Sbjct: 457 YTILIDGLCKGGRLKIAQEVFQHLLIK-GYHLDIRTYTVMISGFCKAGLFDEALALLSKM 515

Query: 340 VYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
             NG  P+  T++I+   L +  +  +A  L  EM+
Sbjct: 516 EDNGCIPNAITFDIIICALFEKDENDKAEKLLREMI 551



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 66/280 (23%), Positives = 124/280 (44%), Gaps = 18/280 (6%)

Query: 104 WNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVME 162
           +N+++D L KN L     +    M  + +  ++ T+ ++   + +   + +A+   + M+
Sbjct: 212 YNIIIDSLCKNKLVGEACNLYSEMNAKQIYPNVVTYTTLIYGFCIMGCLIEAVALLNEMK 271

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQFLRV-VDGRIKPDNDTYAILLEGWEKERDVA 221
                 DV+  + L+ A+ ++GK   A   L V +   +KPD  TY  L++G+    +V 
Sbjct: 272 LKNINPDVYTFSILIDALGKEGKMKAAKIVLAVMMKAYVKPDVVTYNSLVDGYFLVNEVK 331

Query: 222 NAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDG--IYETVNSLKRMMERGCNPG-MT 278
           +AK  F  M           P   SY I +   C    + E ++  + M  +   P  +T
Sbjct: 332 HAKYVFNSMA-----QSGVTPGVQSYTIMIDGLCKTKMVDEAISLFEEMKHKNVIPNTIT 386

Query: 279 FFKLAFEECLTGQNLRGAEFIWGAMVGRIGFR---PDTHMYNMMISLYCYSNETGAAMKL 335
           F  L    C +G+      ++W  +V ++  R    D   Y+ +I   C +     A+ L
Sbjct: 387 FNSLIDGLCKSGR----IAYVWD-LVDKMRDRSQLADVITYSSLIDALCKNCHLDQAIAL 441

Query: 336 LDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
             +M+     PD+ TY IL + L KG +L  A  +F  ++
Sbjct: 442 FKKMITQEIQPDMYTYTILIDGLCKGGRLKIAQEVFQHLL 481



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 81/354 (22%), Positives = 148/354 (41%), Gaps = 25/354 (7%)

Query: 138 FASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVD 197
           F ++ SS V   R   AI+    ++  G   D+  LN L++  C  G+   ++  L  + 
Sbjct: 72  FNNILSSLVKMQRFPTAISLSKHLDFKGITSDLVTLNILINCFCHLGQITLSFSVLATIL 131

Query: 198 GR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD 256
            R   PD  T   L++G     +V  A K F + V+ + +  D + +Y     TL+ G  
Sbjct: 132 KRGYHPDVITLTTLIKGLCLRGEVKKALK-FHDDVVALEFQLDRI-SYG----TLINGLC 185

Query: 257 GIYET---VNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDT 313
            I ET   +  ++ + ER   P +  + +  +     + +  A  ++  M  +    P+ 
Sbjct: 186 KIGETKAAIQLMRNLEERSIKPDVVMYNIIIDSLCKNKLVGEACNLYSEMNAK-QIYPNV 244

Query: 314 HMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNE 373
             Y  +I  +C       A+ LL+EM      PD+ T++IL + L K  K+  A  +   
Sbjct: 245 VTYTTLIYGFCIMGCLIEAVALLNEMKLKNINPDVYTFSILIDALGKEGKMKAAKIVLAV 304

Query: 374 MVKNENVLNHENCRAAVRVYMDSDDPYVAI---KFWKY----MIENHCSDLSETGNLLVA 426
           M+K          +  V  Y    D Y  +   K  KY    M ++  +   ++  +++ 
Sbjct: 305 MMK-------AYVKPDVVTYNSLVDGYFLVNEVKHAKYVFNSMAQSGVTPGVQSYTIMID 357

Query: 427 GLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKCK 480
           GLC   M+ EA+   + M  K +       + L   L K+ + A   +L+ K +
Sbjct: 358 GLCKTKMVDEAISLFEEMKHKNVIPNTITFNSLIDGLCKSGRIAYVWDLVDKMR 411


>gi|449453792|ref|XP_004144640.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79080,
           chloroplastic-like [Cucumis sativus]
          Length = 566

 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 112/478 (23%), Positives = 192/478 (40%), Gaps = 61/478 (12%)

Query: 14  SPDPHNKRKRSTFASHLDVPNLPPTI--KTLCEIIANT-----PSPTVEDVLDKTLIRVS 66
           +P P   R+   F SH  +PN+      K   +++A+T     P  T+  + +  + ++ 
Sbjct: 13  NPSPETTRRGCGFFSH--IPNIQKLSLNKGFSKVLASTQITISPKDTIFTLPNWKIGKLD 70

Query: 67  QETVEQVLKFSYSHPGPAV-KFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIK 125
           Q++ E  L  ++ H    V K  +   +Q        A  L+ DL  K C        ++
Sbjct: 71  QKSKELRLNDAFFHLEFMVEKGQKPDVFQ--------ATQLLYDLC-KTCKMRKAIKVME 121

Query: 126 SMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDG 184
            M    ++   A++  + SS      V  A+   D ME+YG   +    NSL+  +C  G
Sbjct: 122 MMIGSGIIPDAASYTFLVSSLCRKGNVGYAMQLVDKMEEYGYPTNTATYNSLVRGLCMHG 181

Query: 185 KTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPA 243
               + Q L R++   + P+  TY+ LLE   KER    A K   E +I  G  P N+ +
Sbjct: 182 NLTQSLQLLDRLIQKGLVPNAYTYSFLLEAAYKERGADEASKLLDE-IIAKGGKP-NLVS 239

Query: 244 YDSYLITLLKGCDGIYETVNSLKRMM-ERGCNPGMTFFKLAFEE-CLTGQ----NLRGAE 297
           Y+  L  L K  +G  E    L R +  +G +P +  + +     C  G+    N+  AE
Sbjct: 240 YNVLLTGLCK--EGRTEDAMQLFRELPSKGFSPNVVSYNILLRSLCNEGRWEEANVLLAE 297

Query: 298 F----------IWGAMVG-------------------RIGFRPDTHMYNMMISLYCYSNE 328
                       +  ++G                   R  F+P    YN +I+  C   +
Sbjct: 298 MDGDERSPSTVTYNILIGSLTLHGRTEHALEVLEEMIRARFKPTASSYNPIIARLCKDRK 357

Query: 329 TGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRA 388
               +K LD+M+Y    P+  TYN +     +G  + EA  +   +   ++    E  + 
Sbjct: 358 VDLVVKCLDQMMYRHCNPNEGTYNAIATLCEEGM-VQEAFSIIQSLGNKQHFSTQEFYKI 416

Query: 389 AVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAE 446
            +       + Y A +    M +   +  S T + L+ GLC   ML EA++    M E
Sbjct: 417 VITSLCRKGNTYPAFQLLYEMTKYGFTPDSFTYSSLIRGLCMEGMLNEAIEIFSVMEE 474



 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 81/334 (24%), Positives = 140/334 (41%), Gaps = 41/334 (12%)

Query: 150 RVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYA 208
           R+ DA    + M + G K DVF    LL  +C+  K   A + + ++ G  I PD  +Y 
Sbjct: 77  RLNDAFFHLEFMVEKGQKPDVFQATQLLYDLCKTCKMRKAIKVMEMMIGSGIIPDAASYT 136

Query: 209 ILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRM 268
            L+    ++ +V  A +   +M  E G+ P N   Y+S L+  L     + +++  L R+
Sbjct: 137 FLVSSLCRKGNVGYAMQLVDKME-EYGY-PTNTATYNS-LVRGLCMHGNLTQSLQLLDRL 193

Query: 269 MERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNE 328
           +++G  P    +    E     +    A  +   ++ + G +P+   YN++++  C    
Sbjct: 194 IQKGLVPNAYTYSFLLEAAYKERGADEASKLLDEIIAK-GGKPNLVSYNVLLTGLCKEGR 252

Query: 329 TGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNE--------NV 380
           T  AM+L  E+   G  P++ +YNIL   L    +  EA+ L  EM  +E        N+
Sbjct: 253 TEDAMQLFRELPSKGFSPNVVSYNILLRSLCNEGRWEEANVLLAEMDGDERSPSTVTYNI 312

Query: 381 LN----------------HENCRAAVRVYMDSDDPYVA-----------IKFWKYMIENH 413
           L                  E  RA  +    S +P +A           +K    M+  H
Sbjct: 313 LIGSLTLHGRTEHALEVLEEMIRARFKPTASSYNPIIARLCKDRKVDLVVKCLDQMMYRH 372

Query: 414 CSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEK 447
           C+    T N  +A LC+  M+ EA    + +  K
Sbjct: 373 CNPNEGTYN-AIATLCEEGMVQEAFSIIQSLGNK 405



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 74/297 (24%), Positives = 120/297 (40%), Gaps = 9/297 (3%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           +L ++  + +      R +DA+  F  +   G   +V + N LL ++C +G+  +A   L
Sbjct: 236 NLVSYNVLLTGLCKEGRTEDAMQLFRELPSKGFSPNVVSYNILLRSLCNEGRWEEANVLL 295

Query: 194 RVVDGRIK-PDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
             +DG  + P   TY IL+          +A +   EM I   + P    +Y+  +  L 
Sbjct: 296 AEMDGDERSPSTVTYNILIGSLTLHGRTEHALEVLEEM-IRARFKP-TASSYNPIIARLC 353

Query: 253 KGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD 312
           K    +   V  L +MM R CNP    +      C  G        I    +G       
Sbjct: 354 KD-RKVDLVVKCLDQMMYRHCNPNEGTYNAIATLCEEGMVQEAFSIIQS--LGNKQHFST 410

Query: 313 THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFN 372
              Y ++I+  C    T  A +LL EM   G  PD  TY+ L   L     L EA  +F+
Sbjct: 411 QEFYKIVITSLCRKGNTYPAFQLLYEMTKYGFTPDSFTYSSLIRGLCMEGMLNEAIEIFS 470

Query: 373 EMVKNENV-LNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGL 428
             V  EN+ L+ EN  + +     S    +A+  ++ M+         T  +LV G+
Sbjct: 471 --VMEENIKLDTENYNSLILGCCKSRRTDLALDVFEIMVGKGYLANETTYTILVEGI 525



 Score = 43.1 bits (100), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 58/264 (21%), Positives = 107/264 (40%), Gaps = 14/264 (5%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           S  T+  +  S  +  R + A+   + M +   K    + N +++ +C+D K     + L
Sbjct: 306 STVTYNILIGSLTLHGRTEHALEVLEEMIRARFKPTASSYNPIIARLCKDRKVDLVVKCL 365

Query: 194 -RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
            +++     P+  TY  +    E+       ++ F   +I+   +  +    + Y I + 
Sbjct: 366 DQMMYRHCNPNEGTYNAIATLCEE----GMVQEAFS--IIQSLGNKQHFSTQEFYKIVIT 419

Query: 253 KGC--DGIYETVNSLKRMMERGCNP-GMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGF 309
             C     Y     L  M + G  P   T+  L    C+ G  L  A  I+  M   I  
Sbjct: 420 SLCRKGNTYPAFQLLYEMTKYGFTPDSFTYSSLIRGLCMEGM-LNEAIEIFSVMEENI-- 476

Query: 310 RPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASG 369
           + DT  YN +I   C S  T  A+ + + MV  G   +  TY IL E ++  +++  A+ 
Sbjct: 477 KLDTENYNSLILGCCKSRRTDLALDVFEIMVGKGYLANETTYTILVEGIIHEKEMDLATE 536

Query: 370 LFNEMVKNENVLNHENCRAAVRVY 393
           +  E+ +  +V+N       V  Y
Sbjct: 537 VLREL-QLRDVINQSTVERLVMQY 559


>gi|356519375|ref|XP_003528348.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 589

 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 68/247 (27%), Positives = 115/247 (46%), Gaps = 8/247 (3%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           ++ TFA++ +       V  A    D +E  G + + +   ++++ +C+ G T  A  +L
Sbjct: 140 TVVTFATLINGLCAEGNVARAARFADSLEDMGHQSNSYTYGAIINGLCKAGDTSGAILYL 199

Query: 194 RVVDGRIKPDNDT---YAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLIT 250
             + GR   D D    Y+ +++   K+  V  A   F  M  + G  PD V AY+S LI 
Sbjct: 200 EKIKGR-NCDLDVVIAYSTIMDSLCKDGMVCEALNLFSGMTSK-GIQPDLV-AYNS-LIH 255

Query: 251 LLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFR 310
            L       E    L  MM +G  P +  F +  +       +  A+ I G MV  +G  
Sbjct: 256 GLCNFGRWKEATTLLGNMMRKGIMPNVQTFNVLVDNFCKDGMISRAKTIMGFMV-HVGVE 314

Query: 311 PDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGL 370
           PD   YN +IS +C  ++ G A+K+ + M++ G  P++ TY+ L     K + + +A  L
Sbjct: 315 PDVVTYNSVISGHCLLSQMGDAVKVFELMIHKGFLPNLVTYSSLIHGWCKTKNINKALFL 374

Query: 371 FNEMVKN 377
             EMV +
Sbjct: 375 LGEMVNS 381



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 88/343 (25%), Positives = 151/343 (44%), Gaps = 42/343 (12%)

Query: 138 FASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVV 196
           ++++  S      V +A+  F  M   G + D+ A NSL+  +C  G+  +A   L  ++
Sbjct: 215 YSTIMDSLCKDGMVCEALNLFSGMTSKGIQPDLVAYNSLIHGLCNFGRWKEATTLLGNMM 274

Query: 197 DGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD 256
              I P+  T+ +L++ + K+  ++ AK   G MV  VG +PD V  Y+S +I+      
Sbjct: 275 RKGIMPNVQTFNVLVDNFCKDGMISRAKTIMGFMV-HVGVEPD-VVTYNS-VISGHCLLS 331

Query: 257 GIYETVNSLKRMMERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHM 315
            + + V   + M+ +G  P + T+  L    C T +N+  A F+ G MV   G  PD   
Sbjct: 332 QMGDAVKVFELMIHKGFLPNLVTYSSLIHGWCKT-KNINKALFLLGEMVNS-GLNPDVVT 389

Query: 316 YNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
           ++ +I  +C + +  AA +L   M  +   P++QT  I+ + L K +   EA  LF EM 
Sbjct: 390 WSTLIGGFCKAGKPEAAKELFCTMHEHDQHPNLQTCAIILDGLFKCQFHSEAISLFREME 449

Query: 376 KNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLP 435
           K    LN       V +Y                            N+++ G+C    L 
Sbjct: 450 KMNLELN-------VVIY----------------------------NIVLDGMCSFGKLN 474

Query: 436 EAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKK 478
           +A +    +  KGI++   A + + + L K       E LL K
Sbjct: 475 DAQELFSCLPSKGIKIDVVAYTTMIKGLCKEGLLDDAENLLMK 517



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/230 (23%), Positives = 99/230 (43%), Gaps = 11/230 (4%)

Query: 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL- 193
           + T+ SV S + +  ++ DA+  F++M   G   ++   +SL+   C+  K I+   FL 
Sbjct: 317 VVTYNSVISGHCLLSQMGDAVKVFELMIHKGFLPNLVTYSSLIHGWCKT-KNINKALFLL 375

Query: 194 -RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITL- 251
             +V+  + PD  T++ L+ G+ K      AK+ F  M      + D  P   +  I L 
Sbjct: 376 GEMVNSGLNPDVVTWSTLIGGFCKAGKPEAAKELFCTM-----HEHDQHPNLQTCAIILD 430

Query: 252 -LKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFR 310
            L  C    E ++  + M +      +  + +  +   +   L  A+ ++  +  + G +
Sbjct: 431 GLFKCQFHSEAISLFREMEKMNLELNVVIYNIVLDGMCSFGKLNDAQELFSCLPSK-GIK 489

Query: 311 PDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVK 360
            D   Y  MI   C       A  LL +M  NG  P+  TYN+    L++
Sbjct: 490 IDVVAYTTMIKGLCKEGLLDDAENLLMKMEENGCLPNEFTYNVFVRGLLQ 539



 Score = 40.8 bits (94), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 33/145 (22%), Positives = 60/145 (41%), Gaps = 1/145 (0%)

Query: 307 IGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWE 366
           +G +PD +   ++I+  C+ N T     +L  M   G  P + T+  L   L     +  
Sbjct: 100 LGIKPDVYTLTIIINCLCHLNHTVFGFSVLGVMFKIGVDPTVVTFATLINGLCAEGNVAR 159

Query: 367 ASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCS-DLSETGNLLV 425
           A+   + +    +  N     A +     + D   AI + + +   +C  D+    + ++
Sbjct: 160 AARFADSLEDMGHQSNSYTYGAIINGLCKAGDTSGAILYLEKIKGRNCDLDVVIAYSTIM 219

Query: 426 AGLCDMHMLPEAVKYAKGMAEKGIQ 450
             LC   M+ EA+    GM  KGIQ
Sbjct: 220 DSLCKDGMVCEALNLFSGMTSKGIQ 244


>gi|356551942|ref|XP_003544331.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 545

 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 85/356 (23%), Positives = 157/356 (44%), Gaps = 29/356 (8%)

Query: 138 FASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVV 196
           F  +  S V   R   AI+ +  ME    + D F LN +++  C  G+ + A+  + +++
Sbjct: 61  FNKILISLVNVKRYPTAISLYKQMELSEVEPDYFTLNIIINCFCHFGQVVLAFSGVSKIL 120

Query: 197 DGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD 256
               +P+  T   L++G   E  V  A + F + V+  G+    +    SY I L+ G  
Sbjct: 121 KLGYQPNTITLNTLMKGLCLEGKVKEALR-FHDKVLAQGFRLSGI----SYGI-LINGVC 174

Query: 257 GIYET---VNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDT 313
            I ET   +  L+R+      P +  + +  +       +  A  ++  MVG+ G  PD 
Sbjct: 175 KIGETRAAIRLLRRIERWSIRPNVVIYSMIIDRLCKDTLVDEAYDLYTEMVGK-GISPDV 233

Query: 314 HMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNE 373
             Y++++S +C   +   A+ LL+EMV     PDI TY IL + L K  K+ EA  +   
Sbjct: 234 VTYSILVSGFCIVGQLNRAIDLLNEMVLENINPDIYTYTILVDALCKEGKVKEAENVLAV 293

Query: 374 MVKNENVLNHENCRAAVRVYMDSDDPYVAI-------KFWKYMIENHCSDLSETGNLLVA 426
           MVK    L+       V VY    D Y  +       + +  M +   +      ++++ 
Sbjct: 294 MVKACVNLD-------VVVYSTLMDGYCLVNEVNNAKRVFYTMTQMGVTPDVHCYSIMIN 346

Query: 427 GLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEA----VYEELLKK 478
           GLC +  + EA+   + + +K +       + L   L K+ + +    +++E+L +
Sbjct: 347 GLCKIKRVDEALNLFEEIHQKNMVPDTVTYTSLIDCLCKSGRISYVWDLFDEMLDR 402



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 90/370 (24%), Positives = 155/370 (41%), Gaps = 62/370 (16%)

Query: 89  RWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVV 147
           RWS      + +   +++++D L K+ L D  +D    M  + +   + T++ + S + +
Sbjct: 191 RWSI-----RPNVVIYSMIIDRLCKDTLVDEAYDLYTEMVGKGISPDVVTYSILVSGFCI 245

Query: 148 ADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRV-VDGRIKPDNDT 206
             ++  AI   + M       D++    L+ A+C++GK  +A   L V V   +  D   
Sbjct: 246 VGQLNRAIDLLNEMVLENINPDIYTYTILVDALCKEGKVKEAENVLAVMVKACVNLDVVV 305

Query: 207 YAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLK 266
           Y+ L++G+    +V NAK+ F  M  ++G  PD V  Y S +I  L     + E +N   
Sbjct: 306 YSTLMDGYCLVNEVNNAKRVFYTMT-QMGVTPD-VHCY-SIMINGLCKIKRVDEALN--- 359

Query: 267 RMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYS 326
                            FEE                 + +    PDT  Y  +I   C S
Sbjct: 360 ----------------LFEE-----------------IHQKNMVPDTVTYTSLIDCLCKS 386

Query: 327 NETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENC 386
                   L DEM+  G  PD+ TYN L + L K   L  A  LFN+M K++ +      
Sbjct: 387 GRISYVWDLFDEMLDRGQPPDVITYNNLIDALCKNGHLDRAIALFNKM-KDQAI------ 439

Query: 387 RAAVRVYMDSDDPYV-------AIKFWK-YMIENHCSDLSETGNLLVAGLCDMHMLPEAV 438
           R  V  +    D          A++F++  + + +C ++  T  +++ GLC   +L EA+
Sbjct: 440 RPNVYTFTILLDGLCKVGRLKNALEFFQDLLTKGYCLNV-RTYTVMINGLCKEGLLDEAL 498

Query: 439 KYAKGMAEKG 448
                M + G
Sbjct: 499 ALQSRMEDNG 508



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 104/485 (21%), Positives = 191/485 (39%), Gaps = 45/485 (9%)

Query: 22  KRSTFASHLDVPNLPPTIKTLCEIIANTPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHP 81
           +R  +   L +PN PP +  LC    + P           L   + + V Q     + HP
Sbjct: 5   RRLRYCLSLSIPNFPPFLPNLCFHSHSLPP----------LTHNADDAVSQFNHMFHVHP 54

Query: 82  GPAVKFFRWSAYQL-NDKHSPYAWNLVVDL-------------LGKNCL---------FD 118
            P    F      L N K  P A +L   +             +  NC          F 
Sbjct: 55  TPHTFHFNKILISLVNVKRYPTAISLYKQMELSEVEPDYFTLNIIINCFCHFGQVVLAFS 114

Query: 119 AMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLS 178
            +   +K   + N ++L T   +     +  +VK+A+   D +   G +    +   L++
Sbjct: 115 GVSKILKLGYQPNTITLNT---LMKGLCLEGKVKEALRFHDKVLAQGFRLSGISYGILIN 171

Query: 179 AICRDGKTIDAWQFLRVVDG-RIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWD 237
            +C+ G+T  A + LR ++   I+P+   Y+++++   K+  V  A   + EMV + G  
Sbjct: 172 GVCKIGETRAAIRLLRRIERWSIRPNVVIYSMIIDRLCKDTLVDEAYDLYTEMVGK-GIS 230

Query: 238 PDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAE 297
           PD V    S L++       +   ++ L  M+    NP +  + +  +       ++ AE
Sbjct: 231 PDVVTY--SILVSGFCIVGQLNRAIDLLNEMVLENINPDIYTYTILVDALCKEGKVKEAE 288

Query: 298 FIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEF 357
            +   MV +     D  +Y+ ++  YC  NE   A ++   M   G  PD+  Y+I+   
Sbjct: 289 NVLAVMV-KACVNLDVVVYSTLMDGYCLVNEVNNAKRVFYTMTQMGVTPDVHCYSIMING 347

Query: 358 LVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDL 417
           L K +++ EA  LF E+ +   V +     + +     S         +  M++      
Sbjct: 348 LCKIKRVDEALNLFEEIHQKNMVPDTVTYTSLIDCLCKSGRISYVWDLFDEMLDRGQPPD 407

Query: 418 SETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKA--RKEAV--YE 473
             T N L+  LC    L  A+     M ++ I+   +  + L   L K    K A+  ++
Sbjct: 408 VITYNNLIDALCKNGHLDRAIALFNKMKDQAIRPNVYTFTILLDGLCKVGRLKNALEFFQ 467

Query: 474 ELLKK 478
           +LL K
Sbjct: 468 DLLTK 472



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 60/277 (21%), Positives = 113/277 (40%), Gaps = 8/277 (2%)

Query: 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASVFSSYVVADRVKDAITTFDV 160
           Y + ++VD L K        + +  M K  V L +  ++++   Y + + V +A   F  
Sbjct: 269 YTYTILVDALCKEGKVKEAENVLAVMVKACVNLDVVVYSTLMDGYCLVNEVNNAKRVFYT 328

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERD 219
           M Q G   DV   + +++ +C+  +  +A      +  + + PD  TY  L++   K   
Sbjct: 329 MTQMGVTPDVHCYSIMINGLCKIKRVDEALNLFEEIHQKNMVPDTVTYTSLIDCLCKSGR 388

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTF 279
           ++     F EM ++ G  PD V  Y++ +  L K    +   +    +M ++   P +  
Sbjct: 389 ISYVWDLFDEM-LDRGQPPD-VITYNNLIDALCKN-GHLDRAIALFNKMKDQAIRPNVYT 445

Query: 280 FKLAFEE-CLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDE 338
           F +  +  C  G+     EF    +    G+  +   Y +MI+  C       A+ L   
Sbjct: 446 FTILLDGLCKVGRLKNALEFFQDLLTK--GYCLNVRTYTVMINGLCKEGLLDEALALQSR 503

Query: 339 MVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
           M  NG   D  T+ I+        +  +A  L  EM+
Sbjct: 504 MEDNGCISDAVTFEIMIRAFFDKDENDKAEKLVREMI 540



 Score = 48.1 bits (113), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 50/220 (22%), Positives = 100/220 (45%), Gaps = 7/220 (3%)

Query: 90  WSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVA 148
           ++  Q+      + ++++++ L K    D   +  + + ++N++    T+ S+      +
Sbjct: 327 YTMTQMGVTPDVHCYSIMINGLCKIKRVDEALNLFEEIHQKNMVPDTVTYTSLIDCLCKS 386

Query: 149 DRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTY 207
            R+      FD M   G   DV   N+L+ A+C++G    A   F ++ D  I+P+  T+
Sbjct: 387 GRISYVWDLFDEMLDRGQPPDVITYNNLIDALCKNGHLDRAIALFNKMKDQAIRPNVYTF 446

Query: 208 AILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLK- 266
            ILL+G  K   + NA + F +++ + G+   NV  Y   +  L K  +G+ +   +L+ 
Sbjct: 447 TILLDGLCKVGRLKNALEFFQDLLTK-GYCL-NVRTYTVMINGLCK--EGLLDEALALQS 502

Query: 267 RMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGR 306
           RM + GC      F++             AE +   M+ R
Sbjct: 503 RMEDNGCISDAVTFEIMIRAFFDKDENDKAEKLVREMIAR 542


>gi|32489924|emb|CAE05516.1| OSJNBa0038P21.9 [Oryza sativa Japonica Group]
          Length = 825

 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 69/301 (22%), Positives = 126/301 (41%), Gaps = 39/301 (12%)

Query: 138 FASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVV 196
           F ++ ++Y     +  ++  F+ M + G   D+   ++++SA CR G+  DA + F  ++
Sbjct: 402 FNTLINAYARLGMMDKSLLMFEDMTKQGVNPDIITFSTVISAFCRLGRLDDAMEKFNHMI 461

Query: 197 DGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD 256
           D  + PD   Y+ L++G    RD+  AK+   +M+ + G  P  +  + S          
Sbjct: 462 DTGVPPDTAVYSCLIQGQCNRRDLVKAKELISDMLSK-GIPPPCIKFFTS---------- 510

Query: 257 GIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMY 316
                +N+L                     C  G+   G + +   ++   G RP+   +
Sbjct: 511 ----IINNL---------------------CKEGRVAEGKDVV--DLIIHTGQRPNLITF 543

Query: 317 NMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK 376
           N ++  YC       A+ LLD M   G  PDI TYN L +   K  ++ +A  LF +M+ 
Sbjct: 544 NSLVDGYCLVGNMKEAVGLLDSMESVGVEPDIYTYNTLVDGYCKHGRIDDALTLFRDMLH 603

Query: 377 NENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPE 436
               L   +    +     +    VA + +  MIE+  +    T   ++ GLC  +   E
Sbjct: 604 KRVTLTSVSYNIILHGLFQARRTIVAKEMFHEMIESGMAVSIHTYATVLGGLCRNNCTDE 663

Query: 437 A 437
           A
Sbjct: 664 A 664



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 81/357 (22%), Positives = 141/357 (39%), Gaps = 44/357 (12%)

Query: 131 NVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAW 190
           +V S       FS     D+  D    F  ME+ G   +V   +SL++ +C+  +   A 
Sbjct: 223 DVFSYNALIDGFSKEGEVDKAHD---LFYKMEEQGIMPNVVTYSSLINGLCKTKEMDKAE 279

Query: 191 QFLR-VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLI 249
           + LR +V   ++P+N TY  L+ G+        + + F EM   +   PD V   +S++ 
Sbjct: 280 RVLRQMVGAGVRPNNMTYNCLIHGYSTSGMWKESVRVFKEMSSSL-LVPD-VGNCNSFMT 337

Query: 250 TLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGF 309
            L K    I E  +    M+ +G  P +  +        T   + G + ++  MV   G 
Sbjct: 338 ALCKH-GRIKEARDIFDSMVLKGPKPDVISYGALLHGYATAGCIAGMDNLFNVMVCE-GV 395

Query: 310 RPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASG 369
            PD H++N +I+ Y        ++ + ++M   G  PDI T++ +     +  +L +A  
Sbjct: 396 VPDRHVFNTLINAYARLGMMDKSLLMFEDMTKQGVNPDIITFSTVISAFCRLGRLDDAME 455

Query: 370 LFNEMVKNE--------NVLNHENC--------RAAVRVYMDSDDPYVAIKFWKYMIENH 413
            FN M+           + L    C        +  +   +    P   IKF+  +I N 
Sbjct: 456 KFNHMIDTGVPPDTAVYSCLIQGQCNRRDLVKAKELISDMLSKGIPPPCIKFFTSIINNL 515

Query: 414 CSD------------LSETG--------NLLVAGLCDMHMLPEAVKYAKGMAEKGIQ 450
           C +            +  TG        N LV G C +  + EAV     M   G++
Sbjct: 516 CKEGRVAEGKDVVDLIIHTGQRPNLITFNSLVDGYCLVGNMKEAVGLLDSMESVGVE 572



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 76/342 (22%), Positives = 136/342 (39%), Gaps = 6/342 (1%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRV 195
           T+  +   Y  +   K+++  F  M       DV   NS ++A+C+ G+  +A   F  +
Sbjct: 296 TYNCLIHGYSTSGMWKESVRVFKEMSSSLLVPDVGNCNSFMTALCKHGRIKEARDIFDSM 355

Query: 196 VDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
           V    KPD  +Y  LL G+     +A     F  MV E G  PD      + LI      
Sbjct: 356 VLKGPKPDVISYGALLHGYATAGCIAGMDNLFNVMVCE-GVVPDR--HVFNTLINAYARL 412

Query: 256 DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHM 315
             + +++   + M ++G NP +  F            L  A   +  M+   G  PDT +
Sbjct: 413 GMMDKSLLMFEDMTKQGVNPDIITFSTVISAFCRLGRLDDAMEKFNHMID-TGVPPDTAV 471

Query: 316 YNMMISLYCYSNETGAAMKLLDEMVYNGAFPD-IQTYNILFEFLVKGRKLWEASGLFNEM 374
           Y+ +I   C   +   A +L+ +M+  G  P  I+ +  +   L K  ++ E   + + +
Sbjct: 472 YSCLIQGQCNRRDLVKAKELISDMLSKGIPPPCIKFFTSIINNLCKEGRVAEGKDVVDLI 531

Query: 375 VKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHML 434
           +      N     + V  Y    +   A+     M          T N LV G C    +
Sbjct: 532 IHTGQRPNLITFNSLVDGYCLVGNMKEAVGLLDSMESVGVEPDIYTYNTLVDGYCKHGRI 591

Query: 435 PEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELL 476
            +A+   + M  K + +T  + + +   L +AR+  V +E+ 
Sbjct: 592 DDALTLFRDMLHKRVTLTSVSYNIILHGLFQARRTIVAKEMF 633



 Score = 47.8 bits (112), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 65/267 (24%), Positives = 103/267 (38%), Gaps = 12/267 (4%)

Query: 116 LFDAMW---DAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKH---D 169
           LFD +    DA    +  N L L+  A    S    D    A+  F  M++  C      
Sbjct: 130 LFDELLLRRDAPAPARGLNEL-LSALARAPPSAACRDVPALAVELFKRMDRCACPEAAPT 188

Query: 170 VFALNSLLSAICRDGKT-IDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFG 228
           ++  N L++   R  +  +    F R++   + PD  +Y  L++G+ KE +V  A   F 
Sbjct: 189 IYTYNILINCYRRARRPDLGLPVFGRLLRTGLGPDVFSYNALIDGFSKEGEVDKAHDLFY 248

Query: 229 EMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECL 288
           +M  E G  P NV  Y S LI  L     + +    L++M+  G  P    +        
Sbjct: 249 KME-EQGIMP-NVVTYSS-LINGLCKTKEMDKAERVLRQMVGAGVRPNNMTYNCLIHGYS 305

Query: 289 TGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDI 348
           T    + +  ++  M   +   PD    N  ++  C       A  + D MV  G  PD+
Sbjct: 306 TSGMWKESVRVFKEMSSSL-LVPDVGNCNSFMTALCKHGRIKEARDIFDSMVLKGPKPDV 364

Query: 349 QTYNILFEFLVKGRKLWEASGLFNEMV 375
            +Y  L         +     LFN MV
Sbjct: 365 ISYGALLHGYATAGCIAGMDNLFNVMV 391



 Score = 40.4 bits (93), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 35/150 (23%), Positives = 60/150 (40%), Gaps = 1/150 (0%)

Query: 299 IWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFL 358
           ++G ++ R G  PD   YN +I  +    E   A  L  +M   G  P++ TY+ L   L
Sbjct: 211 VFGRLL-RTGLGPDVFSYNALIDGFSKEGEVDKAHDLFYKMEEQGIMPNVVTYSSLINGL 269

Query: 359 VKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLS 418
            K +++ +A  +  +MV      N+      +  Y  S     +++ +K M  +      
Sbjct: 270 CKTKEMDKAERVLRQMVGAGVRPNNMTYNCLIHGYSTSGMWKESVRVFKEMSSSLLVPDV 329

Query: 419 ETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448
              N  +  LC    + EA      M  KG
Sbjct: 330 GNCNSFMTALCKHGRIKEARDIFDSMVLKG 359


>gi|357138611|ref|XP_003570884.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g17140-like [Brachypodium distachyon]
          Length = 864

 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 77/336 (22%), Positives = 138/336 (41%), Gaps = 21/336 (6%)

Query: 122 DAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAIC 181
           DA+  +     ++L    +V + +    RV +A    D M   G   +V   N  +SA+C
Sbjct: 192 DALAVLDAMPEMNLVVCNTVVAGFCREGRVDEAERLVDRMRAQGLAPNVVTFNGRISALC 251

Query: 182 RDGKTIDAWQFLRVVD-----GRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGW 236
           + G+ ++A++    +      G  +PD  T+ ++L G+     V  A  T    ++  G 
Sbjct: 252 KAGRVLEAYRIFNDMQEAWEQGLPRPDQVTFDVMLSGFCDAGMVDEA--TVLVDIMRCGG 309

Query: 237 DPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEE-CLTGQNL-- 293
               V +Y+ +L  L+K    + E    L  M   G  P    + +  +  C  G+    
Sbjct: 310 FLRKVESYNRWLSGLVKN-GRVGEAQELLSEMAHEGVQPNSYTYNIIVDGLCKEGKAFDV 368

Query: 294 -RGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYN 352
            R  +F+   ++      PD   Y  ++  YC    T AA ++LDEM   G  P++ TYN
Sbjct: 369 RRVEDFVRSGVM-----TPDVVTYTSLLHAYCSKGNTTAANRILDEMAQKGCAPNLFTYN 423

Query: 353 ILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIEN 412
           +L + L+K  +  E   L   M +    L+  +C   +     +    +A+     M   
Sbjct: 424 VLLQSLLKAGRTTEVERLLERMSEKGYSLDTASCNIIIDGLCRNSKLEMAMDIVDGMWNE 483

Query: 413 HCSDLSETGNLLVAGLCDMHM----LPEAVKYAKGM 444
               L   GN  V+ + D  +    LP+ + Y+  M
Sbjct: 484 GRLALRRLGNSFVSLVSDSSISKSCLPDRITYSTLM 519



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 86/414 (20%), Positives = 160/414 (38%), Gaps = 69/414 (16%)

Query: 102 YAWNLVVDLLGKNC-LFDAMWDAIKSMKKENVLS--LATFASVFSSYVVADRVKDAITTF 158
           Y +N++VD L K    FD     ++   +  V++  + T+ S+  +Y        A    
Sbjct: 350 YTYNIIVDGLCKEGKAFDVR--RVEDFVRSGVMTPDVVTYTSLLHAYCSKGNTTAANRIL 407

Query: 159 DVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGW--- 214
           D M Q GC  ++F  N LL ++ + G+T +  + L R+ +     D  +  I+++G    
Sbjct: 408 DEMAQKGCAPNLFTYNVLLQSLLKAGRTTEVERLLERMSEKGYSLDTASCNIIIDGLCRN 467

Query: 215 ---EKERDVAN--------AKKTFGEMVIEVGWD--------PDNVPAYDSYLITLLKGC 255
              E   D+ +        A +  G   + +  D        PD +  Y + +  L K  
Sbjct: 468 SKLEMAMDIVDGMWNEGRLALRRLGNSFVSLVSDSSISKSCLPDRI-TYSTLMNALCK-- 524

Query: 256 DGIY-ETVNSLKRMMERGCNPGMTFFKLAFEE-CLTGQNLRGAEFIWGAMVGRIGFRPDT 313
           +G + E    L  M+ +  +P    +       C+ G+     + +    + +    P T
Sbjct: 525 EGRFDEAKKKLVEMIGKDISPDSVIYDTFIHGYCMHGKTSLAIKVLRD--MEKRSCNPST 582

Query: 314 HMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNE 373
             YN++I  +    ++   +KL+ EM   G   ++ TYN L +       + +A  L +E
Sbjct: 583 RSYNLLIWGFQEKQKSDEILKLMSEMKEKGISSNVMTYNSLIKSFCGRGMVNKAMPLLDE 642

Query: 374 MVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIEN----------HCSDLS----- 418
           M++NE V N  +    ++ +  + D   A + +   +             C++LS     
Sbjct: 643 MLQNEIVPNVTSFGLLIKAFCKTADFSAAQRVFDVALSTCGQKEVLYCLMCTELSTYARW 702

Query: 419 -ETGNLL------------------VAGLCDMHMLPEAVKYAKGMAEKGIQVTP 453
            E  N+L                  +AGLCD+     A    K    KG    P
Sbjct: 703 IEAKNILETALEMRISIQSFPYKRIIAGLCDVSEADHAHSLLKLFIAKGYSFDP 756



 Score = 46.2 bits (108), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 77/328 (23%), Positives = 122/328 (37%), Gaps = 35/328 (10%)

Query: 165 GCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAK 224
           G   DVF  N+LL A+   G+   A    RV D     +  +  IL  G+ +    A+A 
Sbjct: 138 GATPDVFTRNALLEALSAAGRMDLAR---RVFDAMPARNEFSSGILARGYCRAGRSADAL 194

Query: 225 KTFGEMVIEVGWDPD-NVPAYDSYLITLLKGCDG-IYETVNSLKRMMERGCNPGMTFFKL 282
                M       P+ N+   ++ +    +  +G + E    + RM  +G  P +  F  
Sbjct: 195 AVLDAM-------PEMNLVVCNTVVAGFCR--EGRVDEAERLVDRMRAQGLAPNVVTFNG 245

Query: 283 AFEECLTGQNLRGAEFIWGAM--VGRIGF-RPDTHMYNMMISLYCYSNETGAAMKLLDEM 339
                     +  A  I+  M      G  RPD   +++M+S +C +     A  L+D M
Sbjct: 246 RISALCKAGRVLEAYRIFNDMQEAWEQGLPRPDQVTFDVMLSGFCDAGMVDEATVLVDIM 305

Query: 340 VYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDP 399
              G    +++YN     LVK  ++ EA  L +EM        HE  +     Y    D 
Sbjct: 306 RCGGFLRKVESYNRWLSGLVKNGRVGEAQELLSEMA-------HEGVQPNSYTYNIIVDG 358

Query: 400 YVAIKFWKYMIENHCSDLSETGNL---------LVAGLCDMHMLPEAVKYAKGMAEKGIQ 450
               K  K        D   +G +         L+   C       A +    MA+KG  
Sbjct: 359 LC--KEGKAFDVRRVEDFVRSGVMTPDVVTYTSLLHAYCSKGNTTAANRILDEMAQKGCA 416

Query: 451 VTPFALSKLKQILIKARKEAVYEELLKK 478
              F  + L Q L+KA +    E LL++
Sbjct: 417 PNLFTYNVLLQSLLKAGRTTEVERLLER 444


>gi|224093190|ref|XP_002309826.1| predicted protein [Populus trichocarpa]
 gi|222852729|gb|EEE90276.1| predicted protein [Populus trichocarpa]
          Length = 1480

 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 86/343 (25%), Positives = 154/343 (44%), Gaps = 24/343 (6%)

Query: 45  IIANTPSPTVEDVLDKTLIRVSQE----TVEQVLKFSYSHPGPAVKFFRWSAYQLNDKH- 99
           I+  T    V DVLD   ++++       V+ V + S+     A++ + W    LN +H 
Sbjct: 163 ILGLTQDQFVADVLDDRKVQMTPTDLCFVVKSVGQESWHR---ALEVYEW----LNLRHW 215

Query: 100 -SPYAWNL--VVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAIT 156
            SP A  L  ++ +LGK        +     +     ++  + ++   Y    R      
Sbjct: 216 YSPNARMLSTILSVLGKANQEALAVEVFMRAEPSAGNTVQVYNAMMGVYARRGRFNKVQE 275

Query: 157 TFDVMEQYGCKHDVFALNSLLSAICRDGKTID--AWQFL-RVVDGRIKPDNDTYAILLEG 213
             D+M + GCK D+ + N+L++A  + G  +   A + L  V    ++PD  TY  L+  
Sbjct: 276 LLDLMRERGCKPDLVSFNTLINARLKAGAMMPNLAIELLNEVRRSGLRPDTITYNTLISA 335

Query: 214 WEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGC 273
             +  ++  A K F +M  E      ++  Y++ +I++   C    +       +  RG 
Sbjct: 336 CSRASNLEEAAKVFDDM--EAHHCQPDLWTYNA-MISVYGRCGLSGKAEQLFNDLESRGF 392

Query: 274 NP-GMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAA 332
            P  +++  L +     G N+   + IW  MV +IGF  D   YN MI +Y    +   A
Sbjct: 393 FPDAVSYNSLLYAFAREG-NVEKVKEIWEEMV-KIGFGKDEMTYNTMIHMYGKQGQNELA 450

Query: 333 MKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
           ++L  +M  +G  PD  TY +L + L K  K+ EA+G+ +EM+
Sbjct: 451 LQLYRDMQSSGRNPDAVTYTVLIDSLGKTNKIAEAAGVMSEML 493



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 60/249 (24%), Positives = 116/249 (46%), Gaps = 7/249 (2%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           T+ ++ S+   A  +++A   FD ME + C+ D++  N+++S   R G +  A Q    +
Sbjct: 328 TYNTLISACSRASNLEEAAKVFDDMEAHHCQPDLWTYNAMISVYGRCGLSGKAEQLFNDL 387

Query: 197 DGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
           + R   PD  +Y  LL  + +E +V   K+ + EMV ++G+  D +  Y++ +   + G 
Sbjct: 388 ESRGFFPDAVSYNSLLYAFAREGNVEKVKEIWEEMV-KIGFGKDEM-TYNTMI--HMYGK 443

Query: 256 DGIYETVNSLKR-MMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTH 314
            G  E    L R M   G NP    + +  +       +  A  +   M+   G +P   
Sbjct: 444 QGQNELALQLYRDMQSSGRNPDAVTYTVLIDSLGKTNKIAEAAGVMSEMLN-TGVKPTLK 502

Query: 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
            Y+ +I  Y  + +   A +  D M+ +G  PD   Y+++ +  ++  +   A  L+ EM
Sbjct: 503 TYSALICGYAKAGKPVEAEETFDCMLRSGIRPDHLAYSVMLDIHLRFNEPKRAMTLYKEM 562

Query: 375 VKNENVLNH 383
           + +   L+H
Sbjct: 563 LHDGITLDH 571



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 64/321 (19%), Positives = 126/321 (39%), Gaps = 5/321 (1%)

Query: 140  SVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDG 198
            ++  +Y  +   + A   F+ M + G    V  +N LL A+  DG+  + +  ++ + D 
Sbjct: 818  ALIEAYAASGCYERARAIFNTMMRDGPSPTVDTINGLLQALIVDGRLDELYVVVQELQDM 877

Query: 199  RIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGI 258
              K    +  ++L+ + +  ++   KK +  M    G+ P  +  Y   +  LL     +
Sbjct: 878  GFKISKSSILLMLDAFARAGNIFEVKKIYHGMKA-AGYFP-TMHLY-RVMARLLSRGKQV 934

Query: 259  YETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNM 318
             +    L  M E G  P ++ +    +  +  ++ R    ++   +   G  PD   YN 
Sbjct: 935  RDVEAMLSEMEEAGFKPDLSIWNSVLKMYVAIEDFRKTIQVY-QRIKEDGLEPDEDTYNT 993

Query: 319  MISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNE 378
            +I +YC  +       L+ EM   G  P + TY  L     K + + +A  LF E+    
Sbjct: 994  LIVMYCRDHRPEEGFSLMHEMRVAGLEPKLDTYKSLVASFGKQQLVEQAEELFEELQSKG 1053

Query: 379  NVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAV 438
              L+       +++Y +S     A + +  M +        T +LL+          EA 
Sbjct: 1054 CKLDRSFYHTMMKIYRNSGSHSKAERLFSMMKDAGVEPTIATMHLLMVSYGSSGQPQEAE 1113

Query: 439  KYAKGMAEKGIQVTPFALSKL 459
            K    + E G  ++    S +
Sbjct: 1114 KVLSNLKETGSNLSTLPYSSV 1134



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 60/266 (22%), Positives = 106/266 (39%), Gaps = 9/266 (3%)

Query: 213 GWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGI----YETVNSLKRM 268
           G    R   N  +   +++ E G  PD V ++++ +   LK    +     E +N ++R 
Sbjct: 262 GVYARRGRFNKVQELLDLMRERGCKPDLV-SFNTLINARLKAGAMMPNLAIELLNEVRR- 319

Query: 269 MERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNE 328
              G  P    +      C    NL  A  ++  M      +PD   YN MIS+Y     
Sbjct: 320 --SGLRPDTITYNTLISACSRASNLEEAAKVFDDMEAH-HCQPDLWTYNAMISVYGRCGL 376

Query: 329 TGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRA 388
           +G A +L +++   G FPD  +YN L     +   + +   ++ EMVK     +      
Sbjct: 377 SGKAEQLFNDLESRGFFPDAVSYNSLLYAFAREGNVEKVKEIWEEMVKIGFGKDEMTYNT 436

Query: 389 AVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448
            + +Y       +A++ ++ M  +  +  + T  +L+  L   + + EA      M   G
Sbjct: 437 MIHMYGKQGQNELALQLYRDMQSSGRNPDAVTYTVLIDSLGKTNKIAEAAGVMSEMLNTG 496

Query: 449 IQVTPFALSKLKQILIKARKEAVYEE 474
           ++ T    S L     KA K    EE
Sbjct: 497 VKPTLKTYSALICGYAKAGKPVEAEE 522



 Score = 42.0 bits (97), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 52/244 (21%), Positives = 99/244 (40%), Gaps = 11/244 (4%)

Query: 135  LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR 194
            L+ + SV   YV  +  +  I  +  +++ G + D    N+L+   CRD +  + +  + 
Sbjct: 953  LSIWNSVLKMYVAIEDFRKTIQVYQRIKEDGLEPDEDTYNTLIVMYCRDHRPEEGFSLMH 1012

Query: 195  VVD-GRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLK 253
             +    ++P  DTY  L+  + K++ V  A++ F E+  + G   D      S+  T++K
Sbjct: 1013 EMRVAGLEPKLDTYKSLVASFGKQQLVEQAEELFEELQSK-GCKLDR-----SFYHTMMK 1066

Query: 254  --GCDGIYETVNSLKRMM-ERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFR 310
                 G +     L  MM + G  P +    L      +    + AE +   +    G  
Sbjct: 1067 IYRNSGSHSKAERLFSMMKDAGVEPTIATMHLLMVSYGSSGQPQEAEKVLSNL-KETGSN 1125

Query: 311  PDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGL 370
              T  Y+ +I  Y  + +    ++ L +M   G  PD + +          R+  EA  L
Sbjct: 1126 LSTLPYSSVIDAYLRNGDYNIGIQKLIQMKKEGLEPDHRIWTCFIRAASLSRRTSEAIVL 1185

Query: 371  FNEM 374
             N +
Sbjct: 1186 LNAL 1189


>gi|110741592|dbj|BAE98744.1| PPR-repeat protein [Arabidopsis thaliana]
          Length = 548

 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 75/313 (23%), Positives = 134/313 (42%), Gaps = 40/313 (12%)

Query: 136 ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRV 195
            T  S+ + +   +RV DA++  D M + G K D+ A N+++ ++C+  +  DA+ F + 
Sbjct: 156 VTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKE 215

Query: 196 VDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG 254
           ++ + I+P+  TY  L+ G       ++A +   +M I+    P NV  Y + L   +K 
Sbjct: 216 IERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDM-IKKKITP-NVITYSALLDAFVK- 272

Query: 255 CDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTH 314
                              N  +   K  FEE                MV R+   PD  
Sbjct: 273 -------------------NGKVLEAKELFEE----------------MV-RMSIDPDIV 296

Query: 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
            Y+ +++  C  +    A ++ D MV  G   D+ +YN L     K +++ +   LF EM
Sbjct: 297 TYSSLVNGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREM 356

Query: 375 VKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHML 434
            +   V N       ++ +  + D   A +F+  M     S    T N+L+ GLCD   L
Sbjct: 357 SQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGEL 416

Query: 435 PEAVKYAKGMAEK 447
            +A+   + M ++
Sbjct: 417 EKALVIFEDMQKR 429



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 81/327 (24%), Positives = 136/327 (41%), Gaps = 11/327 (3%)

Query: 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR 194
           +  + ++  S     RV DA   F  +E+ G + +V    +L++ +C   +  DA + L 
Sbjct: 190 IVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLS 249

Query: 195 -VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLK 253
            ++  +I P+  TY+ LL+ + K   V  AK+ F EMV  +  DPD +  Y S L+  L 
Sbjct: 250 DMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMV-RMSIDPD-IVTYSS-LVNGLC 306

Query: 254 GCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDT 313
             D I E       M+ +GC   +  +          + +     ++  M  R G   +T
Sbjct: 307 LHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQR-GLVSNT 365

Query: 314 HMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNE 373
             YN +I  +  + +   A +   +M + G  PDI TYNIL   L    +L +A  +F +
Sbjct: 366 VTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFED 425

Query: 374 MVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSE---TGNLLVAGLCD 430
           M K E  L+       +R    +     A   W          L     T   +++GLC 
Sbjct: 426 MQKREMDLDIVTYTTVIRGMCKTGKVEEA---WSLFCSLSLKGLKPDIVTYTTMMSGLCT 482

Query: 431 MHMLPEAVKYAKGMAEKGIQVTPFALS 457
             +L E       M ++G+      LS
Sbjct: 483 KGLLHEVEALYTKMKQEGLMKNDCTLS 509



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 75/337 (22%), Positives = 146/337 (43%), Gaps = 46/337 (13%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           S+  F  + S+ V   +    I+    ME  G ++D++  N +++  C   +   A   L
Sbjct: 84  SIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSIL 143

Query: 194 -RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
            +++    +PD  T   L+ G+ +   V++A     +MV E+G+ PD + AY++ + +L 
Sbjct: 144 GKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMV-EIGYKPD-IVAYNAIIDSLC 201

Query: 253 KGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD 312
           K            KR+     N    FFK                      + R G RP+
Sbjct: 202 KT-----------KRV-----NDAFDFFK---------------------EIERKGIRPN 224

Query: 313 THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFN 372
              Y  +++  C S+    A +LL +M+     P++ TY+ L +  VK  K+ EA  LF 
Sbjct: 225 VVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFE 284

Query: 373 EMVK---NENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLC 429
           EMV+   + +++ + +    + ++   D+   A + +  M+   C     + N L+ G C
Sbjct: 285 EMVRMSIDPDIVTYSSLVNGLCLHDRIDE---ANQMFDLMVSKGCLADVVSYNTLINGFC 341

Query: 430 DMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKA 466
               + + +K  + M+++G+       + L Q   +A
Sbjct: 342 KAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQA 378



 Score = 47.8 bits (112), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 38/162 (23%), Positives = 67/162 (41%)

Query: 307 IGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWE 366
           IG++PD   YN +I   C +     A     E+   G  P++ TY  L   L    +  +
Sbjct: 184 IGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSD 243

Query: 367 ASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVA 426
           A+ L ++M+K +   N     A +  ++ +     A + ++ M+         T + LV 
Sbjct: 244 AARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLVN 303

Query: 427 GLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARK 468
           GLC    + EA +    M  KG      + + L     KA++
Sbjct: 304 GLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKR 345


>gi|41152692|dbj|BAD08216.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 401

 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 76/303 (25%), Positives = 134/303 (44%), Gaps = 17/303 (5%)

Query: 152 KDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV---DGRIKPDNDTYA 208
           +DA   FD + + G   DVF+ N LL+ +C + ++ +A + L ++    G   PD  +Y+
Sbjct: 34  EDARHVFDELLRRGIP-DVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYS 92

Query: 209 ILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRM 268
            ++ G+ KE D+        + +++    P NV  Y+S +  L K    + + +  L  M
Sbjct: 93  TVINGFFKEGDL--------DKMLDQRISP-NVVTYNSIIAALCKA-QTVDKAMEVLTTM 142

Query: 269 MERGCNPG-MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSN 327
           ++ G  P  MT+  +    C +GQ      F+    +   G  PD   YN ++   C + 
Sbjct: 143 VKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFL--KKMRSDGVEPDVVTYNSLMDYLCKNG 200

Query: 328 ETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCR 387
               A K+ D M   G  PDI TY  L +       L E  GL + MV+N    NH    
Sbjct: 201 RCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFS 260

Query: 388 AAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEK 447
             V  Y   +    A+  +  M +   +  + T   ++  LC    + +A+ Y + M ++
Sbjct: 261 ILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDE 320

Query: 448 GIQ 450
           G++
Sbjct: 321 GLR 323



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 65/286 (22%), Positives = 127/286 (44%), Gaps = 8/286 (2%)

Query: 95  LNDKHSP--YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRV 151
           L+ + SP    +N ++  L K    D   + + +M K  V+    T+ S+   +  + + 
Sbjct: 108 LDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQP 167

Query: 152 KDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAIL 210
           K+AI     M   G + DV   NSL+  +C++G+  +A +    +  R +KPD  TY  L
Sbjct: 168 KEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTL 227

Query: 211 LEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMME 270
           L+G+  +  +        ++++  G  P++     S L+      + + E +    +M +
Sbjct: 228 LQGYATKGALVEMHGLL-DLMVRNGIHPNHYVF--SILVCAYAKQEKVEEAMLVFSKMRQ 284

Query: 271 RGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETG 330
           +G NP    +    +       +  A   +  M+   G RPD+ +YN +I   C  ++  
Sbjct: 285 QGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDE-GLRPDSIVYNSLIHSLCIFDKWE 343

Query: 331 AAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK 376
            A +L  EM+  G       +N + +   K  ++ E+  LF+ MV+
Sbjct: 344 KAEELFLEMLDRGICLSTIFFNSIIDSHCKEGRVIESGKLFDLMVR 389



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 122/298 (40%), Gaps = 35/298 (11%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           ++ T+ S+ ++   A  V  A+     M + G   D    NS++   C  G+  +A  FL
Sbjct: 115 NVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFL 174

Query: 194 RVV--DGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITL 251
           + +  DG ++PD  TY  L++   K      A+K F  M  + G  PD +  Y     TL
Sbjct: 175 KKMRSDG-VEPDVVTYNSLMDYLCKNGRCTEARKIFDSMT-KRGLKPD-ITTYG----TL 227

Query: 252 LKGC---DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIG 308
           L+G      + E    L  M+  G +P    F +        + +  A  ++  M  + G
Sbjct: 228 LQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQ-G 286

Query: 309 FRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEAS 368
             P+   Y  +I + C S     AM   ++M+  G  PD   YN L   L    K  +A 
Sbjct: 287 LNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKAE 346

Query: 369 GLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSD--LSETGNLL 424
            LF EM      L+   C + +              F+  +I++HC +  + E+G L 
Sbjct: 347 ELFLEM------LDRGICLSTI--------------FFNSIIDSHCKEGRVIESGKLF 384


>gi|357110839|ref|XP_003557223.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Brachypodium distachyon]
          Length = 897

 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 86/355 (24%), Positives = 144/355 (40%), Gaps = 29/355 (8%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-V 195
           T+++   ++  A     A   F+ M +  C  +    N ++S +CR G   +A+ F   +
Sbjct: 247 TYSTFLEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEEAFGFKEEM 306

Query: 196 VDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
           VD  + PD  TY  L+ G  K   +  AK    EM    G  P NV  Y + +   +K  
Sbjct: 307 VDYGLSPDAFTYGALMNGLCKGGRLKEAKALLDEMSCS-GLKP-NVVVYATLVDGFMKEG 364

Query: 256 DGIYETVNSLKRMMERGCNPGMTFF-KLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTH 314
               E  + L  M+  G  P    +  L    C  GQ  R ++ +   M+ ++G RPDT 
Sbjct: 365 KAA-EAFDILNEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLL-NEMI-KVGHRPDTF 421

Query: 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
            Y+ ++  +    +   A +LL+EM  +G  P+  TY I+   L +  +  EA  L  EM
Sbjct: 422 TYHPLMQGHFQHYDKDGAFELLNEMRNSGILPNAYTYGIMINGLCQNGESKEAGNLLEEM 481

Query: 375 VKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETG-----------NL 423
           +        E  +    +Y     P +     +  I   C  L               N 
Sbjct: 482 IS-------EGLKPNAFMYA----PLIIGHSKEGHISLACESLENMTKANVLPDLFCYNS 530

Query: 424 LVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKK 478
           L+ GL  +  + EA +Y   + ++G+    F  S L     K R     ++LL++
Sbjct: 531 LIKGLSTVGRIEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTRNLEKADQLLQQ 585



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 82/350 (23%), Positives = 150/350 (42%), Gaps = 8/350 (2%)

Query: 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLA-TFASVFSSYVVADRVKDAITTFDV 160
           Y + ++++ L +N       + ++ M  E +   A  +A +   +     +  A  + + 
Sbjct: 456 YTYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIGHSKEGHISLACESLEN 515

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERD 219
           M +     D+F  NSL+  +   G+  +A ++   V  R + PD  TY+ L+ G+ K R+
Sbjct: 516 MTKANVLPDLFCYNSLIKGLSTVGRIEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTRN 575

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNS-LKRMMERGCNPGMT 278
           +  A +   +M +  G  P N   Y   L    K  D  +E V+S L+ M+  G  P   
Sbjct: 576 LEKADQLLQQM-LNSGLKP-NADTYTDLLEGYFKSND--HEKVSSILQSMLGSGDKPDNH 631

Query: 279 FFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDE 338
            + +        +N+  A F+    V + G  PD H+Y+ +IS  C   +   A+ LLDE
Sbjct: 632 IYGIVIRNLSRSENMEVA-FMVLTEVEKNGLVPDLHIYSSLISGLCKMADMEKAVGLLDE 690

Query: 339 MVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDD 398
           M   G  P I  YN L +   +   +  A  +F+ ++    + N     A +     + D
Sbjct: 691 MAKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLLPNCVTYTALIDGNCKNGD 750

Query: 399 PYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448
              A   +K M++   +  +   N+L  G  D   L +A+   + M  +G
Sbjct: 751 ITDAFDLYKDMLDRGIAPDAFVYNVLATGCSDAADLEQALFLTEEMFNRG 800



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 84/382 (21%), Positives = 145/382 (37%), Gaps = 69/382 (18%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RV 195
           T+ ++ +      R+K+A    D M   G K +V    +L+    ++GK  +A+  L  +
Sbjct: 317 TYGALMNGLCKGGRLKEAKALLDEMSCSGLKPNVVVYATLVDGFMKEGKAAEAFDILNEM 376

Query: 196 VDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDN--------------- 240
           +   ++P+   Y  L+ G  K   +  A K   EM I+VG  PD                
Sbjct: 377 ISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLNEM-IKVGHRPDTFTYHPLMQGHFQHYD 435

Query: 241 ----------------VPAYDSYLITLLKGCDG--IYETVNSLKRMMERGCNPGMTFF-- 280
                           +P   +Y I +   C      E  N L+ M+  G  P    +  
Sbjct: 436 KDGAFELLNEMRNSGILPNAYTYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAP 495

Query: 281 -----------KLAFE--ECLTGQNLRGAEFIWGAM------VGRI-------------G 308
                       LA E  E +T  N+    F + ++      VGRI             G
Sbjct: 496 LIIGHSKEGHISLACESLENMTKANVLPDLFCYNSLIKGLSTVGRIEEAEEYYAQVQKRG 555

Query: 309 FRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEAS 368
             PD   Y+ +I  YC +     A +LL +M+ +G  P+  TY  L E   K     + S
Sbjct: 556 LVPDEFTYSGLIHGYCKTRNLEKADQLLQQMLNSGLKPNADTYTDLLEGYFKSNDHEKVS 615

Query: 369 GLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGL 428
            +   M+ + +  ++      +R    S++  VA      + +N         + L++GL
Sbjct: 616 SILQSMLGSGDKPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGL 675

Query: 429 CDMHMLPEAVKYAKGMAEKGIQ 450
           C M  + +AV     MA++G++
Sbjct: 676 CKMADMEKAVGLLDEMAKEGLE 697



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 74/331 (22%), Positives = 127/331 (38%), Gaps = 17/331 (5%)

Query: 136 ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRV 195
           A    +  +Y     V+ A     +M   G        N LL  + R       W+    
Sbjct: 176 AVLDVLVDTYKKNGSVRTAAQVVLMMGDLGLAPTRRCCNGLLKDLLRADAMELVWKLKGF 235

Query: 196 VDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEM------VIEVGWDPDNVPAYDSYL 248
           ++G  I PD  TY+  LE   K RD   AKK F EM      + EV ++          +
Sbjct: 236 MEGAGIPPDVYTYSTFLEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYN---------VM 286

Query: 249 ITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIG 308
           I+ L     + E     + M++ G +P    +         G  L+ A+ +   M    G
Sbjct: 287 ISGLCRSGAVEEAFGFKEEMVDYGLSPDAFTYGALMNGLCKGGRLKEAKALLDEMSCS-G 345

Query: 309 FRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEAS 368
            +P+  +Y  ++  +    +   A  +L+EM+  G  P+   Y+ L   L K  +L  AS
Sbjct: 346 LKPNVVVYATLVDGFMKEGKAAEAFDILNEMISAGVQPNKIMYDNLIRGLCKIGQLGRAS 405

Query: 369 GLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGL 428
            L NEM+K  +  +       ++ +    D   A +    M  +     + T  +++ GL
Sbjct: 406 KLLNEMIKVGHRPDTFTYHPLMQGHFQHYDKDGAFELLNEMRNSGILPNAYTYGIMINGL 465

Query: 429 CDMHMLPEAVKYAKGMAEKGIQVTPFALSKL 459
           C      EA    + M  +G++   F  + L
Sbjct: 466 CQNGESKEAGNLLEEMISEGLKPNAFMYAPL 496



 Score = 40.0 bits (92), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 63/168 (37%)

Query: 303 MVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGR 362
           M+G +G  P     N ++     ++      KL   M   G  PD+ TY+   E   K R
Sbjct: 200 MMGDLGLAPTRRCCNGLLKDLLRADAMELVWKLKGFMEGAGIPPDVYTYSTFLEAHCKAR 259

Query: 363 KLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGN 422
               A  +F EM + +  +N       +     S     A  F + M++   S  + T  
Sbjct: 260 DFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEEAFGFKEEMVDYGLSPDAFTYG 319

Query: 423 LLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEA 470
            L+ GLC    L EA      M+  G++      + L    +K  K A
Sbjct: 320 ALMNGLCKGGRLKEAKALLDEMSCSGLKPNVVVYATLVDGFMKEGKAA 367


>gi|449440748|ref|XP_004138146.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18900-like [Cucumis sativus]
          Length = 874

 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 81/353 (22%), Positives = 151/353 (42%), Gaps = 13/353 (3%)

Query: 27  ASHLDVPNLPPTIKTLCEIIANTPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVK 86
           +S L+ PN+  ++  + + +     P  E+ + K    +      Q+LK    H   A+ 
Sbjct: 308 SSFLNAPNVVESVSCILQQL--KWGPAAEEAIGKLNCSIDAYQANQILKRVDDH-AVALG 364

Query: 87  FFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSY 145
           FF W       +H  + +  ++ LLG+   F A+   +  M K+    ++ T+  +  SY
Sbjct: 365 FFYWLKRLPRFRHDGHTYTTMIGLLGRAKQFAAINKLLDQMIKDGCQPNVVTYNRIIHSY 424

Query: 146 VVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDG-KTIDAWQFLRVVDGRIKPDN 204
             A+ ++DA+  F  M++ GC+ D     +L+    + G   +    + ++ D  + PD 
Sbjct: 425 GRANYLQDAVNVFKQMQEAGCEPDRVTYCTLIDIHAKSGFLDVAMGMYEKMQDAGLTPDT 484

Query: 205 DTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITL-LKGCDGIYETVN 263
            TY++++    K   +  A + F  MV     D   VP   +Y I + L+     YE   
Sbjct: 485 FTYSVMINCLGKAGHLNAAHRLFCRMV-----DEGCVPNLVTYNIMIALQAKARNYEIAL 539

Query: 264 SLKR-MMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISL 322
            L R M + G  P    + +  E       L  AE I+  M  +  + PD  +Y +++ L
Sbjct: 540 KLYRDMQQSGFEPDKVTYCIVMEVLGHCGFLEEAEGIFIEMQKK-NWVPDEPVYGLLVDL 598

Query: 323 YCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
           +  S     A +    M+  G  P++ T N L    ++  +L +A  L   M+
Sbjct: 599 WGKSGNVQKAWEWYHAMLKAGLKPNVPTCNSLLSAFLRVHQLSDAYQLLQSML 651


>gi|326525465|dbj|BAJ88779.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 680

 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 68/265 (25%), Positives = 122/265 (46%), Gaps = 17/265 (6%)

Query: 121 WDAIKSM-----KKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNS 175
           WD +K +      K+ V +  TF  +   +     V+ AI     M Q+GC  +    N 
Sbjct: 273 WDDVKVLFAEMVDKKCVPNEVTFDMLVRFFCRGGMVERAIQVLQQMSQHGCTPNTTLCNI 332

Query: 176 LLSAICRDGKTIDAWQFLRVVDG-RIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEV 234
           +++AIC+ G+  DA+ FL  +      PD  +Y  +L G  +     +AK+   EMV + 
Sbjct: 333 VINAICKQGRVDDAYDFLNNMGMYGCNPDTISYTTVLRGLCRAGRWEHAKELLPEMVRKN 392

Query: 235 GWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMM-ERGCNPGM-TFFKLAFEECLTGQN 292
              P N   +++++  L +   G+ E    L  +M E GC+ G+ T+  L    C+ G+ 
Sbjct: 393 C--PPNEVTFNTFICILCQ--KGLIEQAIKLIELMPEYGCSVGIVTYNALVHGFCVQGRV 448

Query: 293 LRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYN 352
               E     +   +   P+T  Y  +++  C++    AA +LL EM+      +  T+N
Sbjct: 449 DSALE-----LFNNLPCEPNTITYTTLLTGLCHAERLDAAAELLAEMIQKDCPLNAVTFN 503

Query: 353 ILFEFLVKGRKLWEASGLFNEMVKN 377
           +L  F  +   + EA  L N+M+++
Sbjct: 504 VLVSFFCQKGFVEEAMELVNQMMEH 528



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 83/355 (23%), Positives = 140/355 (39%), Gaps = 51/355 (14%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           S+ T+  +  +   +    +A+   D M   GC  ++   N +++ +CR+G+  DA + L
Sbjct: 186 SVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAKEIL 245

Query: 194 -RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
            R+     +PD  +Y  +L+G    R   + K  F EMV     D   VP   ++ + + 
Sbjct: 246 NRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMV-----DKKCVPNEVTFDMLVR 300

Query: 253 KGCDG--IYETVNSLKRMMERGCNPGMTFFKLAFEE-CLTGQNLRGAEFIWGAMVGRIGF 309
             C G  +   +  L++M + GC P  T   +     C  G+     +F+    +G  G 
Sbjct: 301 FFCRGGMVERAIQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNN--MGMYGC 358

Query: 310 RPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPD---------------------- 347
            PDT  Y  ++   C +     A +LL EMV     P+                      
Sbjct: 359 NPDTISYTTVLRGLCRAGRWEHAKELLPEMVRKNCPPNEVTFNTFICILCQKGLIEQAIK 418

Query: 348 -------------IQTYNILFE-FLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVY 393
                        I TYN L   F V+GR +  A  LFN +    N + +      +  +
Sbjct: 419 LIELMPEYGCSVGIVTYNALVHGFCVQGR-VDSALELFNNLPCEPNTITYTTLLTGL-CH 476

Query: 394 MDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448
            +  D   A +    MI+  C   + T N+LV+  C    + EA++    M E G
Sbjct: 477 AERLD--AAAELLAEMIQKDCPLNAVTFNVLVSFFCQKGFVEEAMELVNQMMEHG 529



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 76/281 (27%), Positives = 117/281 (41%), Gaps = 23/281 (8%)

Query: 159 DVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKE 217
             M Q GC+  V     LL A+C+     +A   L  +  +   P+  TY +++ G  +E
Sbjct: 176 STMLQRGCQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIINGMCRE 235

Query: 218 RDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGI--YETVNSL-KRMMERGCN 274
             V +AK+    +    G+ PD V    SY  T+LKG      ++ V  L   M+++ C 
Sbjct: 236 GRVDDAKEILNRLS-SYGFQPDIV----SY-TTVLKGLCAARRWDDVKVLFAEMVDKKCV 289

Query: 275 PG-MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAM 333
           P  +TF  L    C  G   R  + +    + + G  P+T + N++I+  C       A 
Sbjct: 290 PNEVTFDMLVRFFCRGGMVERAIQVLQ--QMSQHGCTPNTTLCNIVINAICKQGRVDDAY 347

Query: 334 KLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK-----NENVLNHENCRA 388
             L+ M   G  PD  +Y  +   L +  +   A  L  EMV+     NE   N   C  
Sbjct: 348 DFLNNMGMYGCNPDTISYTTVLRGLCRAGRWEHAKELLPEMVRKNCPPNEVTFNTFICIL 407

Query: 389 AVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLC 429
             +  ++      AIK  + M E  CS    T N LV G C
Sbjct: 408 CQKGLIEQ-----AIKLIELMPEYGCSVGIVTYNALVHGFC 443



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 67/307 (21%), Positives = 114/307 (37%), Gaps = 55/307 (17%)

Query: 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVM 161
           +A  L+ +++ KNC               N ++  TF  +     +   ++ AI   ++M
Sbjct: 380 HAKELLPEMVRKNC-------------PPNEVTFNTFICILCQKGL---IEQAIKLIELM 423

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVA 221
            +YGC   +   N+L+   C  G+   A +    +    +P+  TY  LL G      + 
Sbjct: 424 PEYGCSVGIVTYNALVHGFCVQGRVDSALELFNNLP--CEPNTITYTTLLTGLCHAERLD 481

Query: 222 NAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFK 281
            A +   EM+ +    P N   ++  L++       + E +  + +MME GC P +  F 
Sbjct: 482 AAAELLAEMIQKDC--PLNAVTFN-VLVSFFCQKGFVEEAMELVNQMMEHGCTPNLITFN 538

Query: 282 LAFEECLTGQNLRGAEFIWGAMVGR----------------------------------I 307
              +      N   A  +   +V +                                  +
Sbjct: 539 TLLDGITKDCNSEEALELLHGLVSKGVSLDTITYSSVVDVLSREDRTEEAIQMLHAVQDM 598

Query: 308 GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEA 367
           G RP   MYN ++   C   ET  A+     MV NG  P+  TY IL E L     L EA
Sbjct: 599 GMRPKVGMYNKILFALCKRCETDQAIDFFAYMVSNGCMPNESTYIILIEGLAHEGLLKEA 658

Query: 368 SGLFNEM 374
             + +E+
Sbjct: 659 RYVLSEL 665



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/218 (21%), Positives = 91/218 (41%), Gaps = 1/218 (0%)

Query: 261 TVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMI 320
           T +    M++RGC P +  + +  E          A  +   M  + G  P+   YN++I
Sbjct: 171 TRSPCSTMLQRGCQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAK-GCTPNIVTYNVII 229

Query: 321 SLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENV 380
           +  C       A ++L+ +   G  PDI +Y  + + L   R+  +   LF EMV  + V
Sbjct: 230 NGMCREGRVDDAKEILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCV 289

Query: 381 LNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKY 440
            N       VR +        AI+  + M ++ C+  +   N+++  +C    + +A  +
Sbjct: 290 PNEVTFDMLVRFFCRGGMVERAIQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDF 349

Query: 441 AKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKK 478
              M   G      + + + + L +A +    +ELL +
Sbjct: 350 LNNMGMYGCNPDTISYTTVLRGLCRAGRWEHAKELLPE 387


>gi|8778500|gb|AAF79508.1|AC002328_16 F20N2.6 [Arabidopsis thaliana]
          Length = 554

 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 87/366 (23%), Positives = 151/366 (41%), Gaps = 23/366 (6%)

Query: 21  RKRSTFASHLDVPNLPPTIKTLCEIIANTPSPTVEDVLDKTLIRVSQETVEQVL-----K 75
           RKR   ++ L    +  T++  C      P    +  LD+  + +S   V +VL      
Sbjct: 146 RKRFMESTKLSASRVLDTLQQDC------PGFNTKSALDELNVSISGLLVREVLVGILRT 199

Query: 76  FSYSHPGP----AVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKEN 131
            S+ +       A KFF W   Q N +H+   ++L++ +  +   + AM   I  M K+ 
Sbjct: 200 LSFDNKTRCAKLAYKFFVWCGGQENFRHTANCYHLLMKIFAECGEYKAMCRLIDEMIKDG 259

Query: 132 VLSLA-TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAI--CRDGKTID 188
             + A TF  +  +   A   +D +  F   + +  +    + N++L ++   +  K ID
Sbjct: 260 YPTTACTFNLLICTCGEAGLARDVVEQFIKSKTFNYRPYKHSYNAILHSLLGVKQYKLID 319

Query: 189 AWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYL 248
            W + ++++    PD  TY I++    +        +   EMV + G+ PD +  Y+  L
Sbjct: 320 -WVYEQMLEDGFTPDVLTYNIVMFANFRLGKTDRLYRLLDEMVKD-GFSPD-LYTYNILL 376

Query: 249 ITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIG 308
             L  G +     +N L  M E G  PG+  F    +       L   ++     V ++G
Sbjct: 377 HHLATG-NKPLAALNLLNHMREVGVEPGVIHFTTLIDGLSRAGKLEACKYFMDETV-KVG 434

Query: 309 FRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEAS 368
             PD   Y +MI+ Y    E   A ++  EM   G  P++ TYN +        K  EA 
Sbjct: 435 CTPDVVCYTVMITGYISGGELEKAEEMFKEMTEKGQLPNVFTYNSMIRGFCMAGKFKEAC 494

Query: 369 GLFNEM 374
            L  EM
Sbjct: 495 ALLKEM 500


>gi|125537408|gb|EAY83896.1| hypothetical protein OsI_39118 [Oryza sativa Indica Group]
          Length = 693

 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 86/334 (25%), Positives = 142/334 (42%), Gaps = 23/334 (6%)

Query: 51  SPTVEDVLDKTLIRVSQETVEQVLKF-SYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVD 109
           SP +E  L   L  +S   V  VL+  +      A +FFRW+  Q   +H+P    L++ 
Sbjct: 79  SPKLEAQLRHLLRVLSPPQVRAVLRAQARGDVRRAFEFFRWADRQWRYRHAPEFAQLMLS 138

Query: 110 LLGKNCLFDAMWDAIKSMKKENV---LSLATFASVFSSYVVADRVKDAITTFDVMEQYGC 166
                 L  AM   +  M+K+     +S+   A   +  VVA RV  A+   + M + G 
Sbjct: 139 YSRAGKLRSAM-RVLHLMQKDGCAPDISICNMA--VNVLVVAGRVDKALEFAERMRRVGV 195

Query: 167 KHDVFALNSLLSAICRDGKTIDAWQFLRV-VDGRIKPDNDTYAILLEGWEKERDVANAKK 225
           + DV+  N L+  +C   + +DA + + V +     PD  +Y  ++    KE+ V   + 
Sbjct: 196 EPDVYTYNCLIKGLCGARRVVDAMEMIGVMLQNGCPPDKISYYTVMSFLCKEKRVEEVRG 255

Query: 226 TFGEMVIEVGWDPDNVPAYDSYLITLLK------GCDGIYETVNSLKRMMERGCNPGMTF 279
               M  + G  PD V  Y+  +  L K        + + E+     R+ E G +  +  
Sbjct: 256 LLQRMRNDAGLFPDQV-TYNVLIHGLAKHGHADEALEFLRESEGKRFRVDEVGYSAIVHS 314

Query: 280 FKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEM 339
           F      CL G+     E + G M+ + G +PD   Y+ ++  +C   E   A K++  M
Sbjct: 315 F------CLNGRMAEAKEIV-GEMISK-GCQPDVVTYSTVVDGFCRIGELDQARKMMKHM 366

Query: 340 VYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNE 373
             N   P+  T+  L   L K  K  EA  L N+
Sbjct: 367 YKNDCKPNTVTHTALLNGLCKVGKTSEAWELLNK 400



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/140 (24%), Positives = 63/140 (45%), Gaps = 4/140 (2%)

Query: 236 WDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEE-CLTGQNLR 294
           W   + P +   +++  +    +   +  L  M + GC P ++   +A     + G+  +
Sbjct: 124 WRYRHAPEFAQLMLSYSRA-GKLRSAMRVLHLMQKDGCAPDISICNMAVNVLVVAGRVDK 182

Query: 295 GAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNIL 354
             EF     + R+G  PD + YN +I   C +     AM+++  M+ NG  PD  +Y  +
Sbjct: 183 ALEF--AERMRRVGVEPDVYTYNCLIKGLCGARRVVDAMEMIGVMLQNGCPPDKISYYTV 240

Query: 355 FEFLVKGRKLWEASGLFNEM 374
             FL K +++ E  GL   M
Sbjct: 241 MSFLCKEKRVEEVRGLLQRM 260



 Score = 46.6 bits (109), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 67/342 (19%), Positives = 143/342 (41%), Gaps = 20/342 (5%)

Query: 104 WNLVVDLLGKNCLFDAMWDAIK-SMKKENVLSLATFASVFSSYVVADRVKDAITTFDVME 162
           +N+++  L K+   D   + ++ S  K   +    ++++  S+ +  R+ +A      M 
Sbjct: 273 YNVLIHGLAKHGHADEALEFLRESEGKRFRVDEVGYSAIVHSFCLNGRMAEAKEIVGEMI 332

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYAILLEGWEKERDVA 221
             GC+ DV   ++++   CR G+   A + ++ +     KP+  T+  LL G  K    +
Sbjct: 333 SKGCQPDVVTYSTVVDGFCRIGELDQARKMMKHMYKNDCKPNTVTHTALLNGLCKVGKTS 392

Query: 222 NAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFK 281
            A +   +   E  W P ++    S ++   +    + E+ + + +M+++G  P      
Sbjct: 393 EAWELLNKSE-EEWWTPSDITY--SVVMHGFRREGKLKESCDVVVQMLQKGFFPTTVEIN 449

Query: 282 LAFEE-CLTGQNLRGAEFIW-----GAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKL 335
           L     C  G+     +F+      G  +  + F    H ++          +  +A+ L
Sbjct: 450 LLIHALCKDGKPAEAKDFMEQCQSKGCTINVVNFTTVIHGFS-------RQGDLESALSL 502

Query: 336 LDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMD 395
           +D+M  +   PD+ TY ++ + L K  +L EA+GL  +M+    +      R  +  Y +
Sbjct: 503 MDDMYLSNRHPDVVTYTVVVDALGKKGRLKEATGLVEKMLNRGLLPTPVTYRTVIHRYCE 562

Query: 396 SDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEA 437
             +    +   + M+     ++    N +V  LC    L EA
Sbjct: 563 KGNLEDLLNLLEKMLARQ--EMKSAYNQVVEKLCAFGKLNEA 602


>gi|413926774|gb|AFW66706.1| hypothetical protein ZEAMMB73_789977 [Zea mays]
          Length = 642

 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 76/333 (22%), Positives = 139/333 (41%), Gaps = 21/333 (6%)

Query: 122 DAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAIC 181
           DA+K +     ++L    +V + +     V++A    + M   G   +V   NS +SA+C
Sbjct: 194 DALKVLDGMPSMNLVVCNTVVAGFCKEGLVEEAERLVERMRVQGLAPNVVTFNSRISALC 253

Query: 182 RDGKTIDAWQFLRVVD-----GRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGW 236
           + G+ +DA++  + +      G  +PD  T+ ++L G+     V  A+      ++  G 
Sbjct: 254 KAGRVLDAYRIFKDMQEDWQHGLPRPDQVTFDVMLSGFCDAGFVDEARVLVD--IMRCGG 311

Query: 237 DPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNP-GMTFFKLAFEECLTGQNL-- 293
               V +Y+ +L  L++    + E    L+ M     +P   T+  +    C  G+    
Sbjct: 312 FLRRVESYNRWLSGLVRN-GRVGEAHELLREMAHERIHPNSYTYNIIVSGLCKEGKAFDA 370

Query: 294 -RGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYN 352
            R   FI   ++      PD   Y  ++  YC      AA ++LDEM   G  P+  TYN
Sbjct: 371 RRVENFIRSGVMS-----PDVVTYTSLLHAYCSKGNIAAANRILDEMAQKGCAPNSFTYN 425

Query: 353 ILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIEN 412
           +L + L +  +  EA  L   M +    L+   C   +     +    VA+     M E 
Sbjct: 426 VLLQSLWRAGRTTEAERLLERMSEKGYSLDTAGCNIIIDGLCRNSKLDVAMGIVDGMWEE 485

Query: 413 HCSDLSETGNLLVAGLCDMHM----LPEAVKYA 441
             + L   GN  ++ + D  +    LP+ + Y+
Sbjct: 486 GSTALGRLGNSFLSVVSDSSISQRCLPDRITYS 518



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 87/339 (25%), Positives = 137/339 (40%), Gaps = 30/339 (8%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-V 195
           TF  + S +  A  V +A    D+M   G    V + N  LS + R+G+  +A + LR +
Sbjct: 283 TFDVMLSGFCDAGFVDEARVLVDIMRCGGFLRRVESYNRWLSGLVRNGRVGEAHELLREM 342

Query: 196 VDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL-KG 254
              RI P++ TY I++ G  KE    +A++   E  I  G    +V  Y S L     KG
Sbjct: 343 AHERIHPNSYTYNIIVSGLCKEGKAFDARRV--ENFIRSGVMSPDVVTYTSLLHAYCSKG 400

Query: 255 CDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTH 314
              I      L  M ++GC P    + +  +          AE +   M  + G+  DT 
Sbjct: 401 --NIAAANRILDEMAQKGCAPNSFTYNVLLQSLWRAGRTTEAERLLERMSEK-GYSLDTA 457

Query: 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGA-----------------------FPDIQTY 351
             N++I   C +++   AM ++D M   G+                        PD  TY
Sbjct: 458 GCNIIIDGLCRNSKLDVAMGIVDGMWEEGSTALGRLGNSFLSVVSDSSISQRCLPDRITY 517

Query: 352 NILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIE 411
           +IL   L K  +  EA     EM+  +   +       +  Y       +AIK  + M +
Sbjct: 518 SILISALCKEGRFDEAKKKLLEMIVKDISPDSVIYDTFIHGYCKHGKTSLAIKVLRDMEK 577

Query: 412 NHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQ 450
             C+  + T NLL+ G  + H   E +K    M EKG+ 
Sbjct: 578 KGCNPSTRTYNLLIRGFEEKHKSDEIMKLMSEMEEKGVS 616



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 76/311 (24%), Positives = 136/311 (43%), Gaps = 26/311 (8%)

Query: 82  GPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNC-LFDAMWDAIKSMKKENVLS--LATF 138
           G A +  R  A++    +S Y +N++V  L K    FDA    +++  +  V+S  + T+
Sbjct: 333 GEAHELLREMAHERIHPNS-YTYNIIVSGLCKEGKAFDA--RRVENFIRSGVMSPDVVTY 389

Query: 139 ASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVD 197
            S+  +Y     +  A    D M Q GC  + F  N LL ++ R G+T +A + L R+ +
Sbjct: 390 TSLLHAYCSKGNIAAANRILDEMAQKGCAPNSFTYNVLLQSLWRAGRTTEAERLLERMSE 449

Query: 198 GRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDG 257
                D     I+++G  +     N+K      +++  W+  +         T L     
Sbjct: 450 KGYSLDTAGCNIIIDGLCR-----NSKLDVAMGIVDGMWEEGS---------TALGRLGN 495

Query: 258 IYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYN 317
            + +V S   + +R     +T+  L    C  G+     + +   +V  I   PD+ +Y+
Sbjct: 496 SFLSVVSDSSISQRCLPDRITYSILISALCKEGRFDEAKKKLLEMIVKDIS--PDSVIYD 553

Query: 318 MMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK- 376
             I  YC   +T  A+K+L +M   G  P  +TYN+L     +  K  E   L +EM + 
Sbjct: 554 TFIHGYCKHGKTSLAIKVLRDMEKKGCNPSTRTYNLLIRGFEEKHKSDEIMKLMSEMEEK 613

Query: 377 --NENVLNHEN 385
             + NVL + +
Sbjct: 614 GVSPNVLTYNS 624



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 74/321 (23%), Positives = 125/321 (38%), Gaps = 21/321 (6%)

Query: 165 GCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAK 224
           G + DVF  N LL A+C  G+   A +    +  R   +  ++ IL  G+ +     +A 
Sbjct: 140 GAQPDVFTRNLLLRALCDAGRMELAQRVFEAMPVR---NEFSFGILARGYCRAGRSVDAL 196

Query: 225 KTFGEMVIEVGWDPDNVPAYDSYLI-TLLKG-C-DGIYETVNSL-KRMMERGCNPGMTFF 280
           K             D +P+ +  +  T++ G C +G+ E    L +RM  +G  P +  F
Sbjct: 197 KVL-----------DGMPSMNLVVCNTVVAGFCKEGLVEEAERLVERMRVQGLAPNVVTF 245

Query: 281 KLAFEECLTGQNLRGAEFIWGAMVG--RIGF-RPDTHMYNMMISLYCYSNETGAAMKLLD 337
                       +  A  I+  M    + G  RPD   +++M+S +C +     A  L+D
Sbjct: 246 NSRISALCKAGRVLDAYRIFKDMQEDWQHGLPRPDQVTFDVMLSGFCDAGFVDEARVLVD 305

Query: 338 EMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSD 397
            M   G    +++YN     LV+  ++ EA  L  EM       N       V       
Sbjct: 306 IMRCGGFLRRVESYNRWLSGLVRNGRVGEAHELLREMAHERIHPNSYTYNIIVSGLCKEG 365

Query: 398 DPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALS 457
             + A +   ++     S    T   L+   C    +  A +    MA+KG     F  +
Sbjct: 366 KAFDARRVENFIRSGVMSPDVVTYTSLLHAYCSKGNIAAANRILDEMAQKGCAPNSFTYN 425

Query: 458 KLKQILIKARKEAVYEELLKK 478
            L Q L +A +    E LL++
Sbjct: 426 VLLQSLWRAGRTTEAERLLER 446


>gi|225427482|ref|XP_002263209.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 592

 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 85/351 (24%), Positives = 153/351 (43%), Gaps = 40/351 (11%)

Query: 136 ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR- 194
           ATF ++     V  ++ +A+  FD M   G + +     +L+  +C+ G +  A + LR 
Sbjct: 145 ATFTTLIRGLCVEGKIGEALHLFDKMVGEGFQPNGVTYGTLIHGLCKVGNSRAAIRLLRS 204

Query: 195 VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG 254
           +V    +P+  TY  +++   K+R V  A   F EM+ + G  P NV  Y+S +  L K 
Sbjct: 205 MVQKNCEPNVITYNTIIDCLFKDRQVNEALNIFSEMIAK-GISP-NVSTYNSIIHGLCKF 262

Query: 255 CD--------------------GIYET-VNSLKR-------------MMERGCNPG-MTF 279
            +                     I+ T V++L +             M++RG  P  +T+
Sbjct: 263 SEWKHVATLMNEMVDSKIMPNVVIFTTLVDALCKEGMVTIAHDVVDVMIQRGVEPDVVTY 322

Query: 280 FKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEM 339
             L    CL  + +  A+ ++  MV R G  P+   Y+ +I+ YC       AM L +EM
Sbjct: 323 TALMDGHCLRSE-MDEADKVFDTMV-RKGCAPNVISYSTLINGYCKIQRIDKAMYLFEEM 380

Query: 340 VYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDP 399
                 P+I TYN L   L    +L +A  LF+EMV +  + +    R  +     +   
Sbjct: 381 CQRELVPNIVTYNTLIHGLCHVGRLRDAIALFHEMVASGQIPDLVTYRILLDYLCKTRHL 440

Query: 400 YVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQ 450
             A+   K +  ++ +   ++ N+++ G+C +  L  A      ++ KG+ 
Sbjct: 441 DQAMAMLKAIEGSNLAPDIQSYNIVIDGMCRVGELEAAGDLFSSLSSKGLH 491



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 79/349 (22%), Positives = 146/349 (41%), Gaps = 50/349 (14%)

Query: 124 IKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICR 182
           ++SM ++N   ++ T+ ++        +V +A+  F  M   G   +V   NS++  +C+
Sbjct: 202 LRSMVQKNCEPNVITYNTIIDCLFKDRQVNEALNIFSEMIAKGISPNVSTYNSIIHGLCK 261

Query: 183 DGKTIDAWQFL-----RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWD 237
                  W+ +      +VD +I P+   +  L++   KE  V  A     +++I+ G +
Sbjct: 262 ----FSEWKHVATLMNEMVDSKIMPNVVIFTTLVDALCKEGMVTIAHDVV-DVMIQRGVE 316

Query: 238 PDNVPAYDSY-----LITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQN 292
           PD V  Y +      L + +   D +++T      M+ +GC P +  +          Q 
Sbjct: 317 PD-VVTYTALMDGHCLRSEMDEADKVFDT------MVRKGCAPNVISYSTLINGYCKIQR 369

Query: 293 LRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYN 352
           +  A +++  M  R    P+   YN +I   C+      A+ L  EMV +G  PD+ TY 
Sbjct: 370 IDKAMYLFEEMCQR-ELVPNIVTYNTLIHGLCHVGRLRDAIALFHEMVASGQIPDLVTYR 428

Query: 353 ILFEFLVKGRKLWEASGLFNEM--------VKNENVLNHENCR-----AAVRVYMDSDDP 399
           IL ++L K R L +A  +   +        +++ N++    CR     AA  ++      
Sbjct: 429 ILLDYLCKTRHLDQAMAMLKAIEGSNLAPDIQSYNIVIDGMCRVGELEAAGDLFSSLSSK 488

Query: 400 YVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448
            +    W Y I             ++ GLC   +L EA K  + M   G
Sbjct: 489 GLHPDVWTYTI-------------MINGLCLQGLLAEATKLFREMNTDG 524



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 89/391 (22%), Positives = 165/391 (42%), Gaps = 25/391 (6%)

Query: 84  AVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVF 142
           A++  R S  Q N + +   +N ++D L K+   +   +    M  + +  +++T+ S+ 
Sbjct: 198 AIRLLR-SMVQKNCEPNVITYNTIIDCLFKDRQVNEALNIFSEMIAKGISPNVSTYNSII 256

Query: 143 SSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IK 201
                    K   T  + M       +V    +L+ A+C++G    A   + V+  R ++
Sbjct: 257 HGLCKFSEWKHVATLMNEMVDSKIMPNVVIFTTLVDALCKEGMVTIAHDVVDVMIQRGVE 316

Query: 202 PDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYET 261
           PD  TY  L++G     ++  A K F  MV + G  P NV +Y S LI        I + 
Sbjct: 317 PDVVTYTALMDGHCLRSEMDEADKVFDTMVRK-GCAP-NVISY-STLINGYCKIQRIDKA 373

Query: 262 VNSLKRMMERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMI 320
           +   + M +R   P + T+  L    C  G+ LR A  ++  MV   G  PD   Y +++
Sbjct: 374 MYLFEEMCQRELVPNIVTYNTLIHGLCHVGR-LRDAIALFHEMVAS-GQIPDLVTYRILL 431

Query: 321 SLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM------ 374
              C +     AM +L  +  +   PDIQ+YNI+ + + +  +L  A  LF+ +      
Sbjct: 432 DYLCKTRHLDQAMAMLKAIEGSNLAPDIQSYNIVIDGMCRVGELEAAGDLFSSLSSKGLH 491

Query: 375 --VKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMH 432
             V    ++ +  C   +           A K ++ M  + CS    T NL+  G    +
Sbjct: 492 PDVWTYTIMINGLCLQGLLAE--------ATKLFREMNTDGCSPDDCTYNLITRGFLRNN 543

Query: 433 MLPEAVKYAKGMAEKGIQVTPFALSKLKQIL 463
               A++  + M  +G       ++ + ++L
Sbjct: 544 ETLSAIQLLQEMLGRGFSADASTITLIVEML 574



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 80/354 (22%), Positives = 142/354 (40%), Gaps = 33/354 (9%)

Query: 117 FDAMWDAIKSMKK-ENVLSLA-------------TFASVFSSYVVADRVKDAITTFDVME 162
           F  +  +I +MK    VLSL+             T A V +S+   +RV    +    + 
Sbjct: 77  FAKILTSIANMKHYSTVLSLSKQMDSLGIPSDVYTLAIVINSFCHLNRVDFGFSVLAKIF 136

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDVA 221
           + G + D     +L+  +C +GK  +A   F ++V    +P+  TY  L+ G  K  +  
Sbjct: 137 KLGHQPDTATFTTLIRGLCVEGKIGEALHLFDKMVGEGFQPNGVTYGTLIHGLCKVGNSR 196

Query: 222 NAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFK 281
            A +    MV +   +P NV  Y++ +  L K    + E +N    M+ +G +P ++ + 
Sbjct: 197 AAIRLLRSMV-QKNCEP-NVITYNTIIDCLFKD-RQVNEALNIFSEMIAKGISPNVSTYN 253

Query: 282 LAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVY 341
                       +    +   MV      P+  ++  ++   C       A  ++D M+ 
Sbjct: 254 SIIHGLCKFSEWKHVATLMNEMVDS-KIMPNVVIFTTLVDALCKEGMVTIAHDVVDVMIQ 312

Query: 342 NGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYV 401
            G  PD+ TY  L +      ++ EA  +F+ MV+       + C   V  Y    + Y 
Sbjct: 313 RGVEPDVVTYTALMDGHCLRSEMDEADKVFDTMVR-------KGCAPNVISYSTLINGYC 365

Query: 402 AIKFWK---YMIENHCS-DLSE---TGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448
            I+      Y+ E  C  +L     T N L+ GLC +  L +A+     M   G
Sbjct: 366 KIQRIDKAMYLFEEMCQRELVPNIVTYNTLIHGLCHVGRLRDAIALFHEMVASG 419


>gi|449477323|ref|XP_004154991.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g18900-like [Cucumis sativus]
          Length = 874

 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 81/353 (22%), Positives = 151/353 (42%), Gaps = 13/353 (3%)

Query: 27  ASHLDVPNLPPTIKTLCEIIANTPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVK 86
           +S L+ PN+  ++  + + +     P  E+ + K    +      Q+LK    H   A+ 
Sbjct: 308 SSFLNAPNVVESVSCILQQL--KWGPAAEEAIGKLNCSIDAYQANQILKRVDDH-AVALG 364

Query: 87  FFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSY 145
           FF W       +H  + +  ++ LLG+   F A+   +  M K+    ++ T+  +  SY
Sbjct: 365 FFYWLKRLPRFRHDGHTYTTMIGLLGRAKQFAAINKLLDQMIKDGCQPNVVTYNRIIHSY 424

Query: 146 VVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDG-KTIDAWQFLRVVDGRIKPDN 204
             A+ ++DA+  F  M++ GC+ D     +L+    + G   +    + ++ D  + PD 
Sbjct: 425 GRANYLQDAVNVFKQMQEAGCEPDRVTYCTLIDIHAKSGFLDVAMGMYEKMQDAGLTPDT 484

Query: 205 DTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITL-LKGCDGIYETVN 263
            TY++++    K   +  A + F  MV     D   VP   +Y I + L+     YE   
Sbjct: 485 FTYSVMINCLGKAGHLNAAHRLFCRMV-----DEGCVPNLVTYNIMIALQAKARNYEIAL 539

Query: 264 SLKR-MMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISL 322
            L R M + G  P    + +  E       L  AE I+  M  +  + PD  +Y +++ L
Sbjct: 540 KLYRDMQQSGFEPDKVTYCIVMEVLGHCGFLEEAEGIFIEMQKK-NWVPDEPVYGLLVDL 598

Query: 323 YCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
           +  S     A +    M+  G  P++ T N L    ++  +L +A  L   M+
Sbjct: 599 WGKSGNVQKAWEWYHAMLKAGLKPNVPTCNSLLSAFLRVHQLSDAYQLLQSML 651


>gi|357503757|ref|XP_003622167.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355497182|gb|AES78385.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 563

 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 87/356 (24%), Positives = 153/356 (42%), Gaps = 25/356 (7%)

Query: 36  PPTIKTLCEIIANTPSPT--VEDVLDKTLIRVSQETVEQVLKF--SYSHPGPAVKFFRWS 91
           PP ++ LC+I+ +T      +E  L+K    ++   V QV+      +H    ++FF WS
Sbjct: 111 PPLLQDLCDIVTSTVGGLDDLESCLNKFKGSLTSPLVAQVIDSVKHEAHTRRLLRFFLWS 170

Query: 92  AYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKEN-VLSLATFASVFSSYVVADR 150
              L++      +N  + +  +   + AM   +   KK+  V+   TF  V  +YV   +
Sbjct: 171 NKNLSNDLEDKDYNYALRVFIEKKDYTAMDILLGDFKKQGRVMEAQTFGVVAETYVKLGK 230

Query: 151 VKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTID----AWQFLRVVDGRIKPDNDT 206
             +A+  F  +++Y C  D F + ++++A+C  G        AW     + G +      
Sbjct: 231 EDEALGIFKNLDKYKCLIDEFTVTAIINALCSKGHAKRAEGVAWHHKDKIKGALPC---V 287

Query: 207 YAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLK------GCDGIYE 260
           Y  LL GW  ER+V  +++   EM    G  PD V  Y+++L  L +          + E
Sbjct: 288 YRSLLYGWSLERNVKESRRIIQEMKTN-GVTPDLV-CYNTFLRCLCERNLRNNPSGLVLE 345

Query: 261 TVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEF--IWGAMVGRIGFRPDTHMYNM 318
            +N +  M      P    + +    CL G+  R  E   I  AM  + G  PD   Y +
Sbjct: 346 ALNVMMEMRSYKVFPTSISYNILL-SCL-GKTRRVKESCQILEAM-NKSGVAPDWVSYYL 402

Query: 319 MISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
           +  +   S   G   +++D+M+  G  P+ + Y  L   L    ++  A  LF +M
Sbjct: 403 VSRVLFLSGRFGKGKEIVDQMIEKGLVPNHKFYYSLIGILCGVERVNHALDLFEKM 458


>gi|255575351|ref|XP_002528578.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531974|gb|EEF33786.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 817

 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 90/357 (25%), Positives = 147/357 (41%), Gaps = 17/357 (4%)

Query: 100 SPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTF 158
           S   +N ++D  GK C FD  +  ++ M++  V  ++ ++ S+ +      ++ +A    
Sbjct: 455 SVETYNTLIDGYGKLCTFDRCFQILEQMEEIGVKPNVVSYGSLINCLCKDGKILEAEIVL 514

Query: 159 DVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKE 217
             M   G   +    N L+   C  GK  DA +F   ++   I P   TY +L++G  K+
Sbjct: 515 RDMICRGVLPNAQVYNMLIDGSCMVGKVKDALRFFDEMMRSEISPTLVTYNVLIDGLCKK 574

Query: 218 RDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITL-----LKGCDGIYETVNSLKRMMERG 272
             +  A+  F   +   G  PD V  Y+S +        +  C G+YET+ +L      G
Sbjct: 575 GKLTEAED-FLTQITSSGHSPD-VITYNSLISGYANAGNVSKCLGLYETMKNL------G 626

Query: 273 CNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAA 332
             P +  +      C + + +   E ++  M+ ++   PD  +YN MI  Y     T  A
Sbjct: 627 IKPTVRTYHPLISGC-SKEGIELVEKLYNEML-QMNLLPDRVVYNAMIHCYAEIGNTQKA 684

Query: 333 MKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRV 392
             L   M+  G  PD  TYN L     +  KL     L N M   E     +     V+ 
Sbjct: 685 YSLHQGMLDQGIHPDKMTYNSLILGHFREGKLSNIKDLVNNMKAKELAPKADTYDILVKG 744

Query: 393 YMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
           + D  D   A  +++ M+EN+    +   N L AGL     L E       M  KGI
Sbjct: 745 HCDLKDFSGAYVWYREMVENNFLPNASICNELTAGLEQEGRLQEVQVICSEMNVKGI 801



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 88/369 (23%), Positives = 160/369 (43%), Gaps = 32/369 (8%)

Query: 95  LNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKD 153
           +N   S   +N ++D   K    DA +   + MK+++V  ++ TF S+ S      ++K+
Sbjct: 240 INLVGSIVTYNTLIDGYCKVGELDAAFKMRERMKEKSVAPNIITFNSLLSGLCKMRKMKE 299

Query: 154 AITTFDVMEQYGCKHDVFALNSLLSAI--CRDGK-TIDAWQFLRVVDGRIKPDNDTYAIL 210
           A +    ME  G   D +  + L   +  C DG   ++ ++  +  +  I+ +N T +IL
Sbjct: 300 ARSLLKEMEVNGFMPDGYTYSILFDGLLRCDDGNGAMELYE--QATEKGIRINNYTGSIL 357

Query: 211 LEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMME 270
           L G  K+  V  A++   +   E G   D V  Y++++    +  D + + + +++RM  
Sbjct: 358 LNGLCKQGKVEKAEEILKKFT-ENGLVADEV-IYNTFVNGYCRIGD-MNKAILTIERMES 414

Query: 271 RGCNP-GMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNET 329
            G  P  +TF  L  + C   +  +  E  W   +   G  P    YN +I  Y      
Sbjct: 415 FGLRPNSITFNSLIDKFCDMKEMDKAEE--WVKKMAEKGVTPSVETYNTLIDGYGKLCTF 472

Query: 330 GAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAA 389
               ++L++M   G  P++ +Y  L   L K  K+ EA  +  +M+          CR  
Sbjct: 473 DRCFQILEQMEEIGVKPNVVSYGSLINCLCKDGKILEAEIVLRDMI----------CRGV 522

Query: 390 V---RVY-MDSDDPYV------AIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVK 439
           +   +VY M  D   +      A++F+  M+ +  S    T N+L+ GLC    L EA  
Sbjct: 523 LPNAQVYNMLIDGSCMVGKVKDALRFFDEMMRSEISPTLVTYNVLIDGLCKKGKLTEAED 582

Query: 440 YAKGMAEKG 448
           +   +   G
Sbjct: 583 FLTQITSSG 591



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 78/185 (42%), Gaps = 1/185 (0%)

Query: 265 LKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYC 324
           L  M +RG  P +  + +        + +R AE ++  M   I        YN +I  YC
Sbjct: 199 LDSMRKRGVRPNVFIYNVLIGGLCREKRIRDAEKMFDEMCN-INLVGSIVTYNTLIDGYC 257

Query: 325 YSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHE 384
              E  AA K+ + M      P+I T+N L   L K RK+ EA  L  EM  N  + +  
Sbjct: 258 KVGELDAAFKMRERMKEKSVAPNIITFNSLLSGLCKMRKMKEARSLLKEMEVNGFMPDGY 317

Query: 385 NCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGM 444
                    +  DD   A++ ++   E      + TG++L+ GLC    + +A +  K  
Sbjct: 318 TYSILFDGLLRCDDGNGAMELYEQATEKGIRINNYTGSILLNGLCKQGKVEKAEEILKKF 377

Query: 445 AEKGI 449
            E G+
Sbjct: 378 TENGL 382



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 74/306 (24%), Positives = 125/306 (40%), Gaps = 17/306 (5%)

Query: 154 AITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLE 212
            +  F  +E  G + D F     + A  +        +FL  +  R ++P+   Y +L+ 
Sbjct: 160 VVDLFMEIENSGFRTDTFMYAKAIQAAVKLQNLKMGMEFLDSMRKRGVRPNVFIYNVLIG 219

Query: 213 GWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLI--TLLKGCDGIYETVNSLK---R 267
           G  +E+ + +A+K F EM         N+    S +   TL+ G   + E   + K   R
Sbjct: 220 GLCREKRIRDAEKMFDEMC--------NINLVGSIVTYNTLIDGYCKVGELDAAFKMRER 271

Query: 268 MMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSN 327
           M E+   P +  F          + ++ A  +   M    GF PD + Y+++       +
Sbjct: 272 MKEKSVAPNIITFNSLLSGLCKMRKMKEARSLLKEMEVN-GFMPDGYTYSILFDGLLRCD 330

Query: 328 ETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCR 387
           +   AM+L ++    G   +  T +IL   L K  K+ +A  +  +  +N  V +     
Sbjct: 331 DGNGAMELYEQATEKGIRINNYTGSILLNGLCKQGKVEKAEEILKKFTENGLVADEVIYN 390

Query: 388 AAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEK 447
             V  Y    D   AI   + M        S T N L+   CDM  + +A ++ K MAEK
Sbjct: 391 TFVNGYCRIGDMNKAILTIERMESFGLRPNSITFNSLIDKFCDMKEMDKAEEWVKKMAEK 450

Query: 448 GIQVTP 453
           G  VTP
Sbjct: 451 G--VTP 454



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 65/159 (40%)

Query: 308 GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEA 367
           GFR DT MY   I            M+ LD M   G  P++  YN+L   L + +++ +A
Sbjct: 171 GFRTDTFMYAKAIQAAVKLQNLKMGMEFLDSMRKRGVRPNVFIYNVLIGGLCREKRIRDA 230

Query: 368 SGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAG 427
             +F+EM     V +       +  Y    +   A K  + M E   +    T N L++G
Sbjct: 231 EKMFDEMCNINLVGSIVTYNTLIDGYCKVGELDAAFKMRERMKEKSVAPNIITFNSLLSG 290

Query: 428 LCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKA 466
           LC M  + EA    K M   G     +  S L   L++ 
Sbjct: 291 LCKMRKMKEARSLLKEMEVNGFMPDGYTYSILFDGLLRC 329


>gi|449475988|ref|XP_004154607.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g79540-like [Cucumis sativus]
          Length = 950

 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 104/434 (23%), Positives = 166/434 (38%), Gaps = 54/434 (12%)

Query: 46  IANTPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKF--FRWS--AYQLNDKHSP 101
           I  T  P +ED L     R+   T+  VL+     P   + F  F WS  ++ L  +   
Sbjct: 41  IIETLDP-MEDGLKVISSRIRSYTITSVLQ---EQPDTRLGFRLFIWSLKSWHLRCRT-- 94

Query: 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASVFSSYVVADRVKDAITTFDV 160
              +L++  L K   F+  W  ++ +K   + +S   F+ +  +Y  A   + A+ +F +
Sbjct: 95  -VQDLIIGKLIKENAFELYWKVLQELKNSAIKISSEAFSVLIEAYSEAGMDEKAVESFSL 153

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERD 219
           M  + CK D+FA N +L  + R    + A   + +++   + PD  TY IL+ G  K   
Sbjct: 154 MRDFDCKPDLFAFNLILHFLVRKEAFLLALAVYNQMLKCNLNPDVVTYGILIHGLCKTCK 213

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDG--IYETVNSLKRMMERGCNPGM 277
             +A   F EM      D   +P    Y I L   C    I++      +M   GCN  +
Sbjct: 214 TQDALVLFDEMT-----DRGILPNQIIYSIVLSGLCQAKKIFDAQRLFSKMRASGCNRDL 268

Query: 278 --------------------TFFKLAFEE----------CLTGQNLRGAEF----IWGAM 303
                               T  +L  ++          CL     R   +    +W   
Sbjct: 269 ITYNVLLNGFCKSGYLDDAFTLLQLLTKDGHILGVIGYGCLINGLFRARRYEEAHMWYQK 328

Query: 304 VGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRK 363
           + R   +PD  +Y +MI           A+ LL EM   G  PD   YN L +       
Sbjct: 329 MLRENIKPDVMLYTIMIRGLSQEGRVTEALTLLGEMTERGLRPDTICYNALIKGFCDMGY 388

Query: 364 LWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNL 423
           L EA  L  E+ K++   N+      +     +     A   +K M +  C     T N 
Sbjct: 389 LDEAESLRLEISKHDCFPNNHTYSILICGMCKNGLINKAQHIFKEMEKLGCLPSVVTFNS 448

Query: 424 LVAGLCDMHMLPEA 437
           L+ GLC  + L EA
Sbjct: 449 LINGLCKANRLEEA 462



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 95/402 (23%), Positives = 157/402 (39%), Gaps = 37/402 (9%)

Query: 103 AWNLVVDLLGKNC-------LFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAI 155
            + +++  L K C       LFD M D  + +    ++    ++ V S    A ++ DA 
Sbjct: 200 TYGILIHGLCKTCKTQDALVLFDEMTD--RGILPNQII----YSIVLSGLCQAKKIFDAQ 253

Query: 156 TTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV--DGRIKPDNDTYAILLEG 213
             F  M   GC  D+   N LL+  C+ G   DA+  L+++  DG I      Y  L+ G
Sbjct: 254 RLFSKMRASGCNRDLITYNVLLNGFCKSGYLDDAFTLLQLLTKDGHIL-GVIGYGCLING 312

Query: 214 WEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGC 273
             + R    A   + +M+ E    PD V  Y + +I  L     + E +  L  M ERG 
Sbjct: 313 LFRARRYEEAHMWYQKMLRE-NIKPD-VMLY-TIMIRGLSQEGRVTEALTLLGEMTERGL 369

Query: 274 NPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAM 333
            P    +    +       L  AE +   +     F P+ H Y+++I   C +     A 
Sbjct: 370 RPDTICYNALIKGFCDMGYLDEAESLRLEISKHDCF-PNNHTYSILICGMCKNGLINKAQ 428

Query: 334 KLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM-------------VKNENV 380
            +  EM   G  P + T+N L   L K  +L EA  LF +M                + V
Sbjct: 429 HIFKEMEKLGCLPSVVTFNSLINGLCKANRLEEARLLFYQMEIVRKPSLFLRLSQGTDKV 488

Query: 381 LNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKY 440
            +  + +  +    +S     A K    ++++       T N+L+ G C    +  A K 
Sbjct: 489 FDIASLQVMMERLCESGMILKAYKLLMQLVDSGVLPDIRTYNILINGFCKFGNINGAFKL 548

Query: 441 AKGMAEKGIQVTPFALSKLKQILIKARKE----AVYEELLKK 478
            K M  KG          L   L +A +      ++E+++KK
Sbjct: 549 FKEMQLKGHMPDSVTYGTLIDGLYRAGRNEDALEIFEQMVKK 590



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 80/345 (23%), Positives = 137/345 (39%), Gaps = 63/345 (18%)

Query: 107 VVDLLGKNCLFDAMWDA---------IKSMKKENVL-SLATFASVFSSYVVADRVKDAIT 156
           ++ ++G  CL + ++ A          + M +EN+   +  +  +        RV +A+T
Sbjct: 300 ILGVIGYGCLINGLFRARRYEEAHMWYQKMLRENIKPDVMLYTIMIRGLSQEGRVTEALT 359

Query: 157 TFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR--IKPDNDTYAILLEGW 214
               M + G + D    N+L+   C D   +D  + LR+   +    P+N TY+IL+ G 
Sbjct: 360 LLGEMTERGLRPDTICYNALIKGFC-DMGYLDEAESLRLEISKHDCFPNNHTYSILICGM 418

Query: 215 EKERDVANAKKTFGEMVIEVGWDPDNVPAYD---------------------------SY 247
            K   +  A+  F EM  ++G  P  V                               S 
Sbjct: 419 CKNGLINKAQHIFKEME-KLGCLPSVVTFNSLINGLCKANRLEEARLLFYQMEIVRKPSL 477

Query: 248 LITLLKGCDGIYETVNSLKRMMERGCNPGMTF--FKLAFEECLTGQNLRGAEFIWGAMVG 305
            + L +G D +++ + SL+ MMER C  GM    +KL  +                  + 
Sbjct: 478 FLRLSQGTDKVFD-IASLQVMMERLCESGMILKAYKLLMQ------------------LV 518

Query: 306 RIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLW 365
             G  PD   YN++I+ +C       A KL  EM   G  PD  TY  L + L +  +  
Sbjct: 519 DSGVLPDIRTYNILINGFCKFGNINGAFKLFKEMQLKGHMPDSVTYGTLIDGLYRAGRNE 578

Query: 366 EASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFW-KYM 409
           +A  +F +MVK   V      +  +      ++  +A+  W KY+
Sbjct: 579 DALEIFEQMVKKGCVPESSTYKTIMTWSCRENNISLALSVWMKYL 623


>gi|242086791|ref|XP_002439228.1| hypothetical protein SORBIDRAFT_09g002630 [Sorghum bicolor]
 gi|241944513|gb|EES17658.1| hypothetical protein SORBIDRAFT_09g002630 [Sorghum bicolor]
          Length = 653

 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 88/379 (23%), Positives = 155/379 (40%), Gaps = 27/379 (7%)

Query: 81  PGPAVKFFRWSAYQLNDKH--SPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLAT 137
           P  A+K F  + + L      +P  +N ++D L +  +  A+     +M+K+ V  ++ T
Sbjct: 112 PDRALKTFYRAVHDLGCARPTAPRLYNHLIDALLRENMVGAVALVCGNMRKDGVQPNVFT 171

Query: 138 FASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVD 197
           +  +  +     RV  A    D M   GC  D     +++SA+C  G+  +A + L    
Sbjct: 172 YNLLVRALCQNHRVGAARKMLDEMATKGCPPDDVTYGTIVSALCTLGRVDEATEVLSAA- 230

Query: 198 GRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDG 257
               P   +Y  ++    +E  +       G+MV   G  P NV  Y + +    K  + 
Sbjct: 231 ---PPVAASYNAVILALCREFRMQEVFAVVGDMVGR-GLQP-NVITYTTIVNAFCKAGE- 284

Query: 258 IYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYN 317
           +      L RM+  GC P +  F            +  A  +W  MV   G+ P T  YN
Sbjct: 285 LRMACAILARMVITGCTPNVATFTALVGGLFNDGRVHDALDMWKCMVAE-GWAPSTVSYN 343

Query: 318 MMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKN 377
           ++I   C   +   A  +L++M  +G FP+ +TY+ L +   K   L  A  ++N+M ++
Sbjct: 344 VLIRGLCSVGDLKGASSVLNDMEQHGCFPNARTYSTLIDGFSKAGDLDGAISIWNDMTRS 403

Query: 378 ENVLNHENCRAAVRVYMDSDDPYVAIKFW--------KYMIENHCSDLSETGNLLVAGLC 429
                   C+  V VY +    +     +        K ++EN C   + T N L+  LC
Sbjct: 404 -------GCKPNVVVYTNMVGVFCKKLMFNQAESLIDKMLVEN-CPPNTVTFNTLIRSLC 455

Query: 430 DMHMLPEAVKYAKGMAEKG 448
           +   +  A+     M   G
Sbjct: 456 NCRRVGRALGVFHEMRRHG 474



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 83/357 (23%), Positives = 143/357 (40%), Gaps = 67/357 (18%)

Query: 116 LFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNS 175
           +F  + D +    + NV+   T+ ++ +++  A  ++ A      M   GC  +V    +
Sbjct: 253 VFAVVGDMVGRGLQPNVI---TYTTIVNAFCKAGELRMACAILARMVITGCTPNVATFTA 309

Query: 176 LLSAICRDGKTIDA---WQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVI 232
           L+  +  DG+  DA   W+ + V +G   P   +Y +L+ G     D+  A     +M  
Sbjct: 310 LVGGLFNDGRVHDALDMWKCM-VAEG-WAPSTVSYNVLIRGLCSVGDLKGASSVLNDME- 366

Query: 233 EVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFF---------KLA 283
           + G  P N   Y + +    K  D +   ++    M   GC P +  +         KL 
Sbjct: 367 QHGCFP-NARTYSTLIDGFSKAGD-LDGAISIWNDMTRSGCKPNVVVYTNMVGVFCKKLM 424

Query: 284 FEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNG 343
           F +         AE +   M+      P+T  +N +I   C     G A+ +  EM  +G
Sbjct: 425 FNQ---------AESLIDKMLVE-NCPPNTVTFNTLIRSLCNCRRVGRALGVFHEMRRHG 474

Query: 344 AFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAI 403
             P+ +TYN L              GLF E           NC  A+++ ++        
Sbjct: 475 CPPNGRTYNELLH------------GLFRE----------GNCGDALQMVIE-------- 504

Query: 404 KFWKYMIENHCSDLS-ETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKL 459
                 ++NH  +LS  T N +V+GLC M M  EA+ +   M  +GIQ   F  + +
Sbjct: 505 ------MQNHGIELSLVTYNTVVSGLCQMRMGREAMFFVGRMIVRGIQPDAFTFTAI 555



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 63/250 (25%), Positives = 116/250 (46%), Gaps = 21/250 (8%)

Query: 119 AMW-DAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLL 177
           ++W D  +S  K NV+       VF   ++ ++ +  I   D M    C  +    N+L+
Sbjct: 395 SIWNDMTRSGCKPNVVVYTNMVGVFCKKLMFNQAESLI---DKMLVENCPPNTVTFNTLI 451

Query: 178 SAIC---RDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEV 234
            ++C   R G+ +  +  +R       P+  TY  LL G  +E +  +A     +MVIE+
Sbjct: 452 RSLCNCRRVGRALGVFHEMR--RHGCPPNGRTYNELLHGLFREGNCGDAL----QMVIEM 505

Query: 235 ---GWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNP-GMTFFKLAFEECLTG 290
              G +   V  Y++ +  L +   G  E +  + RM+ RG  P   TF  +    C  G
Sbjct: 506 QNHGIELSLV-TYNTVVSGLCQMRMG-REAMFFVGRMIVRGIQPDAFTFTAIIHAYCKEG 563

Query: 291 QNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQT 350
           + +R A +I GAM   +    +  +Y ++++  C  ++   AM  L +M+Y G +P+  T
Sbjct: 564 E-VRMAAWILGAM-NVVNCGRNILVYTILMAELCNQDKLEDAMVYLLKMLYEGIYPNTVT 621

Query: 351 YNILFEFLVK 360
           +N+L   + +
Sbjct: 622 WNVLVRGVFR 631



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 71/318 (22%), Positives = 123/318 (38%), Gaps = 7/318 (2%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           ++ATF ++        RV DA+  +  M   G      + N L+  +C  G    A   L
Sbjct: 303 NVATFTALVGGLFNDGRVHDALDMWKCMVAEGWAPSTVSYNVLIRGLCSVGDLKGASSVL 362

Query: 194 RVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
             ++     P+  TY+ L++G+ K  D+  A   + +M    G  P NV  Y + +    
Sbjct: 363 NDMEQHGCFPNARTYSTLIDGFSKAGDLDGAISIWNDMT-RSGCKP-NVVVYTNMVGVFC 420

Query: 253 KGCDGIYETVNSL-KRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRP 311
           K    ++    SL  +M+   C P    F          + +  A  ++  M  R G  P
Sbjct: 421 K--KLMFNQAESLIDKMLVENCPPNTVTFNTLIRSLCNCRRVGRALGVFHEMR-RHGCPP 477

Query: 312 DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLF 371
           +   YN ++         G A++++ EM  +G    + TYN +   L + R   EA    
Sbjct: 478 NGRTYNELLHGLFREGNCGDALQMVIEMQNHGIELSLVTYNTVVSGLCQMRMGREAMFFV 537

Query: 372 NEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDM 431
             M+      +     A +  Y    +  +A      M   +C        +L+A LC+ 
Sbjct: 538 GRMIVRGIQPDAFTFTAIIHAYCKEGEVRMAAWILGAMNVVNCGRNILVYTILMAELCNQ 597

Query: 432 HMLPEAVKYAKGMAEKGI 449
             L +A+ Y   M  +GI
Sbjct: 598 DKLEDAMVYLLKMLYEGI 615


>gi|125557843|gb|EAZ03379.1| hypothetical protein OsI_25524 [Oryza sativa Indica Group]
          Length = 716

 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 98/396 (24%), Positives = 158/396 (39%), Gaps = 86/396 (21%)

Query: 132 VLSLATFASVFSSYVV-------ADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDG 184
           V+    F   FS+Y V       A R + A+     M++ G +  V    +L+ A+ R+G
Sbjct: 35  VMRRLKFRPAFSAYTVLIGALAEARRPERALELLRQMQEVGYEVGVHLFTTLVRALAREG 94

Query: 185 KTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPA 243
           +  DA   +  V G  ++PD   Y + ++ + K  +V  A K F E+  + G  PD+V +
Sbjct: 95  QVADALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMACKFFHELKAQ-GLKPDDV-S 152

Query: 244 YDSYLITLLKG--------------------CDGIYETV--------------NSLKRMM 269
           Y S +  L K                     C   Y T+                L+R+ 
Sbjct: 153 YTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGSAGRFEDAYKLLERLR 212

Query: 270 ERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNET 329
           ERGC P +  F  +   CL G+  +  E +    V +    P++  YN++I + C     
Sbjct: 213 ERGCIPSVVSFN-SILTCL-GKKRKVDEALSLFEVMKKDAEPNSSTYNIIIDMLCLGGRV 270

Query: 330 GAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAA 389
             A ++LDEM +   FP++ T NI+ + L K RKL EA  +F          +   C   
Sbjct: 271 EEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESA-------SQRGCNPD 323

Query: 390 VRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
              Y                    CS        L+ GL     + EA +  + M + G 
Sbjct: 324 CVTY--------------------CS--------LIDGLGKKGQVDEAYRLFEKMLDAGH 355

Query: 450 QVTPFALSKL-KQILIKARKE---AVYEELLKK-CK 480
              P   + L +   I  RKE    V++EL+++ CK
Sbjct: 356 NANPVVYTSLIRNFFIHGRKEDGHKVFKELIRRGCK 391



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 84/383 (21%), Positives = 165/383 (43%), Gaps = 11/383 (2%)

Query: 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDV 160
           YA+N ++   G    F+  +  ++ +++   + S+ +F S+ +      +V +A++ F+V
Sbjct: 186 YAYNTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEV 245

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVD-GRIKPDNDTYAILLEGWEKERD 219
           M++   + +    N ++  +C  G+  +A++ L  ++   + P+  T  I+++   K R 
Sbjct: 246 MKK-DAEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARK 304

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTF 279
           +  A K F E   + G +PD V  Y S LI  L     + E     ++M++ G N     
Sbjct: 305 LEEAYKIF-ESASQRGCNPDCV-TYCS-LIDGLGKKGQVDEAYRLFEKMLDAGHNANPVV 361

Query: 280 FKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEM 339
           +                  ++  ++ R G +PD  + N  +     + E      + +++
Sbjct: 362 YTSLIRNFFIHGRKEDGHKVFKELIRR-GCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDI 420

Query: 340 VYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDP 399
              G  PD+++Y+IL   L K  +  E S +F+ M +    L+     A V  +  S   
Sbjct: 421 RSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKV 480

Query: 400 YVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKL 459
           + A +  + M E        T   +V GL  +  L EA    +    KGI++     S L
Sbjct: 481 HKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSL 540

Query: 460 KQILIKARK--EA--VYEELLKK 478
                K  +  EA  + EE++KK
Sbjct: 541 IDGFGKVGRIDEAYLILEEMMKK 563



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 63/277 (22%), Positives = 114/277 (41%), Gaps = 17/277 (6%)

Query: 114 NCLFDAMWDAIKSMKKENVLSLATFASVFSSYVV------ADRVKDAITTFDVMEQYGCK 167
           +C+F A       M  E++ S      V S  ++      A + ++    F  M+Q G  
Sbjct: 402 DCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFA 461

Query: 168 HDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVANAKKT 226
            D  A N+++   C+ GK   A++ L  +  + ++P   TY  +++G  K   +  A   
Sbjct: 462 LDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYML 521

Query: 227 FGEMV---IEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLA 283
           F E     IE+     NV  Y S LI        I E    L+ MM++G  P +  +   
Sbjct: 522 FEEAKSKGIEL-----NVVLYSS-LIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSL 575

Query: 284 FEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNG 343
            +  +  + +  A   + +M   +   P+T+ Y+++I+  C   +   A     +M   G
Sbjct: 576 LDALVKAEEINEALVCFQSM-KEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQG 634

Query: 344 AFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENV 380
             P++ TY  +   L K   + +A  LF     N  +
Sbjct: 635 LVPNVVTYTTMISGLAKVGNITDAYSLFERFKANGGI 671



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 62/284 (21%), Positives = 115/284 (40%), Gaps = 34/284 (11%)

Query: 107 VVDLLGKNC-------LFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFD 159
           ++D LGK         LF+ M DA  +           + S+  ++ +  R +D    F 
Sbjct: 330 LIDGLGKKGQVDEAYRLFEKMLDAGHNANP------VVYTSLIRNFFIHGRKEDGHKVFK 383

Query: 160 VMEQYGCKHDVFALNSLLSAICRDGKT---------IDAWQFLRVVDGRIKPDNDTYAIL 210
            + + GCK D+  LN+ +  + + G+          I ++ FL        PD  +Y+IL
Sbjct: 384 ELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFL--------PDVRSYSIL 435

Query: 211 LEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMME 270
           + G  K          F  M  + G+  D   AY++ +    K    +++    L+ M E
Sbjct: 436 IHGLTKAGQARETSNIFHAMK-QQGFALD-ARAYNAVVDGFCKS-GKVHKAYEILEEMKE 492

Query: 271 RGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETG 330
           +   P +  +    +       L  A  ++     + G   +  +Y+ +I  +       
Sbjct: 493 KCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSK-GIELNVVLYSSLIDGFGKVGRID 551

Query: 331 AAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
            A  +L+EM+  G  P++ T+N L + LVK  ++ EA   F  M
Sbjct: 552 EAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSM 595


>gi|326533642|dbj|BAK05352.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 860

 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 96/477 (20%), Positives = 175/477 (36%), Gaps = 74/477 (15%)

Query: 76  FSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-S 134
           F+    G A   F     Q   K     +NL++D L K    D     ++ M  +     
Sbjct: 276 FNEGETGKACSLFHEMTRQ-GVKPDVVTYNLIIDALCKARAMDKAELVLRQMTTDGAQPD 334

Query: 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR 194
             T++ +   Y    R+K+A   F  M++ G   ++   NS L+++C+ G++ +A +F  
Sbjct: 335 TVTYSCMIHGYATLGRLKEAAKMFREMKKRGLIPNIVTCNSFLASLCKHGRSKEAAEFFD 394

Query: 195 VVDGRI-KPDNDTYAILLEGWEKERDVANAKKTFGEM----------------------- 230
            +  +  KPD  +Y  LL G+  E   A+    F  M                       
Sbjct: 395 SMTAKGHKPDIFSYCTLLHGYASEGCFADMIGLFNSMKSNGIAANCHVFTILIHAYAKRG 454

Query: 231 -----------VIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTF 279
                      + + G  PD V    S +I+       + + +    +M+ RG  P    
Sbjct: 455 MVDDAMLIFTEMQQQGVSPDVVTY--STVISTFSRMGRLTDAMEKFNQMVARGIQPNTAV 512

Query: 280 FKLAFEE-CLTGQNLRGAEFI---------------WGAMV------GR----------- 306
           +    +  C+ G  ++  E +               + +++      GR           
Sbjct: 513 YSSIIQGFCMHGGLVKAKELVSEMINKGIPRPDIVFFSSVINSLCKDGRVMDAHDIFDLA 572

Query: 307 --IGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKL 364
             IG RP    +N +I  YC   +   A K+LD M   G  PDI TYN L +   K  ++
Sbjct: 573 TDIGERPGVITFNSLIDGYCLVGKMDKAFKILDAMEVVGVEPDIVTYNTLLDGYFKNGRI 632

Query: 365 WEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLL 424
            +   LF EM +     N       +     +     A K +  MIE+  +       ++
Sbjct: 633 NDGLTLFREMQRKGVKPNTVTYGIMLAGLFRAGRTVAARKKFHEMIESGTTVTVSIYGII 692

Query: 425 VAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKCKA 481
           + GLC  +   EA+   + +    ++ +   L+ +   + K +++   +EL     A
Sbjct: 693 LGGLCRNNCADEAIILFQKLGTMNVKFSITILNTMINAMYKVQRKEEAKELFATISA 749



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 79/340 (23%), Positives = 131/340 (38%), Gaps = 15/340 (4%)

Query: 148 ADRVKDAITTF-DVMEQYGCKHDVFALNSLLSAICRDG---KTIDAWQFLRVVDGRIKPD 203
           A+R ++A+      M + GC  +  + + +L A+C +    + +D  Q +    G   PD
Sbjct: 205 ANRTEEAVNVLLHRMSELGCVPNAVSYSIVLKALCDNSMSQRALDLLQMMAKQGGACSPD 264

Query: 204 NDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVN 263
              Y+ ++ G+  E +   A   F EM  + G  PD V  Y+  +  L K    + +   
Sbjct: 265 VVAYSTVIHGFFNEGETGKACSLFHEMTRQ-GVKPD-VVTYNLIIDALCKA-RAMDKAEL 321

Query: 264 SLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLY 323
            L++M   G  P    +        T   L+ A  ++  M  R G  P+    N  ++  
Sbjct: 322 VLRQMTTDGAQPDTVTYSCMIHGYATLGRLKEAAKMFREMKKR-GLIPNIVTCNSFLASL 380

Query: 324 CYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNH 383
           C    +  A +  D M   G  PDI +Y  L           +  GLFN M  N    N 
Sbjct: 381 CKHGRSKEAAEFFDSMTAKGHKPDIFSYCTLLHGYASEGCFADMIGLFNSMKSNGIAANC 440

Query: 384 ENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKG 443
                 +  Y        A+  +  M +   S    T + +++    M  L +A++    
Sbjct: 441 HVFTILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISTFSRMGRLTDAMEKFNQ 500

Query: 444 MAEKGIQVTPFALSKLKQ------ILIKARKEAVYEELLK 477
           M  +GIQ      S + Q       L+KA KE V E + K
Sbjct: 501 MVARGIQPNTAVYSSIIQGFCMHGGLVKA-KELVSEMINK 539



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 57/236 (24%), Positives = 90/236 (38%), Gaps = 16/236 (6%)

Query: 148 ADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL--RVVDGRIKPDND 205
           A R    +  F  + + G K D    N+LL  +C   +T +A   L  R+ +    P+  
Sbjct: 170 ARRPDLGLALFGCILRTGLKMDQITANTLLKCLCYANRTEEAVNVLLHRMSELGCVPNAV 229

Query: 206 TYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL------KGCDGIY 259
           +Y+I+L+          A      M  + G    +V AY + +          K C   +
Sbjct: 230 SYSIVLKALCDNSMSQRALDLLQMMAKQGGACSPDVVAYSTVIHGFFNEGETGKACSLFH 289

Query: 260 ETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMM 319
           E       M  +G  P +  + L  +     + +  AE +   M    G +PDT  Y+ M
Sbjct: 290 E-------MTRQGVKPDVVTYNLIIDALCKARAMDKAELVLRQMTTD-GAQPDTVTYSCM 341

Query: 320 ISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
           I  Y        A K+  EM   G  P+I T N     L K  +  EA+  F+ M 
Sbjct: 342 IHGYATLGRLKEAAKMFREMKKRGLIPNIVTCNSFLASLCKHGRSKEAAEFFDSMT 397


>gi|356529503|ref|XP_003533330.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 546

 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 111/496 (22%), Positives = 202/496 (40%), Gaps = 66/496 (13%)

Query: 22  KRSTFASHLDVPNLPPTIKTLCEIIANTPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHP 81
           +R  F+  L +PN    ++       ++  P++++V D     VSQ      ++    H 
Sbjct: 5   RRLRFSVSLSIPNFSSFLQNSSHSHFHSQPPSIQNVDDA----VSQFNRMLCMR----HT 56

Query: 82  GPAVKFFRWSAYQLNDKHSPYAWNLV---------VDLLGKNCLFDAMWDA--------- 123
            P ++F +        KH   A +L           DL+  N L +              
Sbjct: 57  PPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNILINCFCHMGQITFGFSV 116

Query: 124 -IKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICR 182
             K +K+       T  ++     +  +VK A+   D +   G + +  +  +L++ +C+
Sbjct: 117 LAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCK 176

Query: 183 DGKTIDAWQFLRVVDGRI-KPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNV 241
            G T  A + LR +DGR+ KP+ + Y+ +++   K + V+ A   F EM ++ G   D V
Sbjct: 177 IGDTRGAIKLLRKIDGRLTKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVK-GISAD-V 234

Query: 242 PAYDSYLITLLKG--CDG-IYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEF 298
             Y     TL+ G   +G + E +  L  M+ +  NP +  + +  +       ++ A+ 
Sbjct: 235 VTYS----TLIYGFCIEGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKS 290

Query: 299 IWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFL 358
           +   M+ +   +PD   Y+ ++  Y    E   A  + + M   G  PD+ TY IL    
Sbjct: 291 VLAVML-KACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGF 349

Query: 359 VKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDD--------PYVAIKFWKYMI 410
            K + + EA  LF EM       + +N    +  Y    D        PYV    W  + 
Sbjct: 350 CKNKMVDEALNLFKEM-------HQKNMVPGIVTYSSLIDGLCKSGRIPYV----WDLID 398

Query: 411 E----NHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKA 466
           E       +D+  T + L+ GLC    L  A+     M ++ I+   F  + L   L K 
Sbjct: 399 EMRDRGQPADVI-TYSSLIDGLCKNGHLDRAIALFNKMKDQEIRPNIFTFTILLDGLCKG 457

Query: 467 RK----EAVYEELLKK 478
            +    + V+++LL K
Sbjct: 458 GRLKDAQEVFQDLLTK 473



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 60/276 (21%), Positives = 117/276 (42%), Gaps = 6/276 (2%)

Query: 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDV 160
           Y +N++VD L K          +  M K  V   + T++++   Y +   VK A   F+ 
Sbjct: 270 YTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNA 329

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERD 219
           M   G   DV     L++  C++    +A    + +  + + P   TY+ L++G  K   
Sbjct: 330 MSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGR 389

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTF 279
           +        EM       P +V  Y S +  L K    +   +    +M ++   P +  
Sbjct: 390 IPYVWDLIDEM--RDRGQPADVITYSSLIDGLCKN-GHLDRAIALFNKMKDQEIRPNIFT 446

Query: 280 FKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEM 339
           F +  +    G  L+ A+ ++  ++ + G+  + + YN+MI+ +C       A+ +L +M
Sbjct: 447 FTILLDGLCKGGRLKDAQEVFQDLLTK-GYHLNVYTYNVMINGHCKQGLLEEALTMLSKM 505

Query: 340 VYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
             NG  P+  T+  +   L K  +  +A  L  +M+
Sbjct: 506 EDNGCIPNAFTFETIIIALFKKDENDKAEKLLRQMI 541



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 77/365 (21%), Positives = 151/365 (41%), Gaps = 44/365 (12%)

Query: 84  AVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLS-LATFASVF 142
           A+K  R    +L  K +   ++ ++D L K  L    +     M  + + + + T++++ 
Sbjct: 183 AIKLLRKIDGRLT-KPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLI 241

Query: 143 SSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRV-VDGRIK 201
             + +  ++K+AI   + M       +V+  N L+ A+C++GK  +A   L V +   +K
Sbjct: 242 YGFCIEGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVK 301

Query: 202 PDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDG--IY 259
           PD  TY+ L++G+    +V  A+  F  M + +G  PD      +Y I +   C    + 
Sbjct: 302 PDVITYSTLMDGYFLVYEVKKAQHVFNAMSL-MGVTPD----VHTYTILINGFCKNKMVD 356

Query: 260 ETVNSLKRMMERGCNPGM-TFFKLAFEECLTGQ-----------NLRG--------AEFI 299
           E +N  K M ++   PG+ T+  L    C +G+             RG        +  I
Sbjct: 357 EALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRIPYVWDLIDEMRDRGQPADVITYSSLI 416

Query: 300 WG-----------AMVGRIG---FRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAF 345
            G           A+  ++     RP+   + +++   C       A ++  +++  G  
Sbjct: 417 DGLCKNGHLDRAIALFNKMKDQEIRPNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYH 476

Query: 346 PDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKF 405
            ++ TYN++     K   L EA  + ++M  N  + N       +      D+   A K 
Sbjct: 477 LNVYTYNVMINGHCKQGLLEEALTMLSKMEDNGCIPNAFTFETIIIALFKKDENDKAEKL 536

Query: 406 WKYMI 410
            + MI
Sbjct: 537 LRQMI 541


>gi|222615488|gb|EEE51620.1| hypothetical protein OsJ_32898 [Oryza sativa Japonica Group]
          Length = 822

 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 87/356 (24%), Positives = 144/356 (40%), Gaps = 28/356 (7%)

Query: 124 IKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRD 183
           ++ M + +   + TF ++    VVA +V +A+   + M +     DV   N L+S +C+ 
Sbjct: 403 MEMMGRGHTPDVVTFGALIHGLVVAGKVSEALIVREKMTERQVFPDVNIYNVLISGLCKK 462

Query: 184 GKTIDAWQFLR-VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVP 242
                A   L  +++  ++PD   YA L++G+ +  ++ +A+K F E +   G  PD V 
Sbjct: 463 HMLPAAKNILEEMLEKNVQPDEFVYATLIDGFIRSENLGDARKIF-EFMEHKGVRPDIVS 521

Query: 243 AYDSYLITLLKG-CD--GIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFI 299
                   ++KG C    + E +  +  M + GC P    +           NL GA   
Sbjct: 522 CN-----AMIKGYCQFGMMSEAILCMSNMRKVGCIPDEFTYTTVISGYAKQGNLNGALRW 576

Query: 300 WGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLV 359
              M+ R   +P+   Y+ +I+ YC + +T +A  L   M      P++ TY IL   L 
Sbjct: 577 LCDMIKR-KCKPNVVTYSSLINGYCKTGDTDSAEGLFANMQAEALSPNVVTYTILIGSLF 635

Query: 360 KGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDL-- 417
           K  K+  A   F  M+ N    N       V   + S  P V         E H  D   
Sbjct: 636 KKDKVLRAGLYFETMLLNHCSPNDVTLHYLVN-GLTSCTPCVINSICCNTSEVHGKDALL 694

Query: 418 --------------SETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKL 459
                         +   N ++  LC  +ML EA+ +   MA+KG    P     L
Sbjct: 695 VVFKKLVFDIGDPRNSAYNAIIFSLCRHNMLREALDFKNRMAKKGYVPNPITFLSL 750



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 84/319 (26%), Positives = 127/319 (39%), Gaps = 42/319 (13%)

Query: 150 RVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYA 208
           RV++ +   +     GC   V   N L+   CR G        L  ++ +   P   TY 
Sbjct: 219 RVEEGLKLIEARWGAGCIPHVVFYNVLIDGYCRRGDMGRGLLLLGEMEAKGFLPTLVTYG 278

Query: 209 ILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRM 268
            L+    K+ D+      F EM  + G  P NV  Y+S +  L K C    + +  LK+M
Sbjct: 279 SLINCLGKKGDLEKIGSLFLEMR-KRGLSP-NVQIYNSVIDALCK-CWSATQAMVILKQM 335

Query: 269 MERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSN 327
              GC+P + TF  L    C  G   +   F+  A+  R    P+   Y  +I  +C   
Sbjct: 336 FASGCDPDIITFNTLITGLCHEGHVRKAEHFLREAI--RRELNPNQLSYTPLIHGFCMRG 393

Query: 328 ETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCR 387
           E  AA  LL EM+  G  PD+ T+  L   LV   K+ EA  +  +M + +   +     
Sbjct: 394 ELMAASDLLMEMMGRGHTPDVVTFGALIHGLVVAGKVSEALIVREKMTERQVFPD----- 448

Query: 388 AAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEK 447
             V +Y                            N+L++GLC  HMLP A    + M EK
Sbjct: 449 --VNIY----------------------------NVLISGLCKKHMLPAAKNILEEMLEK 478

Query: 448 GIQVTPFALSKLKQILIKA 466
            +Q   F  + L    I++
Sbjct: 479 NVQPDEFVYATLIDGFIRS 497



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 59/292 (20%), Positives = 108/292 (36%), Gaps = 41/292 (14%)

Query: 104 WNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVME 162
           +  +++ LGK    + +      M+K  +  ++  + SV  +         A+     M 
Sbjct: 277 YGSLINCLGKKGDLEKIGSLFLEMRKRGLSPNVQIYNSVIDALCKCWSATQAMVILKQMF 336

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYAILLEGWEKERDVA 221
             GC  D+   N+L++ +C +G    A  FLR  +   + P+  +Y  L+ G+    ++ 
Sbjct: 337 ASGCDPDIITFNTLITGLCHEGHVRKAEHFLREAIRRELNPNQLSYTPLIHGFCMRGELM 396

Query: 222 NAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFK 281
            A                                       + L  MM RG  P +  F 
Sbjct: 397 AAS--------------------------------------DLLMEMMGRGHTPDVVTFG 418

Query: 282 LAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVY 341
                 +    +  A  +   M  R  F PD ++YN++IS  C  +   AA  +L+EM+ 
Sbjct: 419 ALIHGLVVAGKVSEALIVREKMTERQVF-PDVNIYNVLISGLCKKHMLPAAKNILEEMLE 477

Query: 342 NGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVY 393
               PD   Y  L +  ++   L +A  +F  M       +  +C A ++ Y
Sbjct: 478 KNVQPDEFVYATLIDGFIRSENLGDARKIFEFMEHKGVRPDIVSCNAMIKGY 529



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 64/163 (39%), Gaps = 15/163 (9%)

Query: 287 CLTGQNLRGAEFI---WGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNG 343
           CL G+   G + I   WGA     G  P    YN++I  YC   + G  + LL EM   G
Sbjct: 215 CLEGRVEEGLKLIEARWGA-----GCIPHVVFYNVLIDGYCRRGDMGRGLLLLGEMEAKG 269

Query: 344 AFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAI 403
             P + TY  L   L K   L +   LF EM K     N +   + +           A+
Sbjct: 270 FLPTLVTYGSLINCLGKKGDLEKIGSLFLEMRKRGLSPNVQIYNSVIDALCKCWSATQAM 329

Query: 404 KFWKYMIENHCSDLSETGNLLVAGLCD-------MHMLPEAVK 439
              K M  + C     T N L+ GLC         H L EA++
Sbjct: 330 VILKQMFASGCDPDIITFNTLITGLCHEGHVRKAEHFLREAIR 372


>gi|359474405|ref|XP_003631455.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g47360-like [Vitis vinifera]
          Length = 638

 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 103/435 (23%), Positives = 178/435 (40%), Gaps = 30/435 (6%)

Query: 54  VEDVLDKTLIRVSQETVEQVL-KFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLG 112
           +E  L     ++    V +VL + S +     ++FF W+  Q   +HS Y ++   +L  
Sbjct: 42  IEKTLPAVRAKLDSSCVNEVLNRCSLTQSQLGLRFFIWAGVQSYYRHSSYLYSKACELFR 101

Query: 113 KNCLFDAMWDAIKSMKKEN-VLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVF 171
            N    A+ D I++ + E  V+S+ TF  V      A    +A+     M ++  + D  
Sbjct: 102 INQNPRAIIDVIEAYRVEGTVVSVKTFNVVLHLLREAKLADEALWILKKMAEFNIRADTV 161

Query: 172 ALNSLLSAICRDGKTIDAWQFLR---VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFG 228
           A NS++   C  G    A   ++   ++D  + P+  TY  +++G+     + +A K F 
Sbjct: 162 AYNSVIRLFCEKGDMDLAAGLMKEMGLID--LYPNMITYVTMIKGFCNVGRLEDACKLFK 219

Query: 229 EMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMME---------RGCNPGMTF 279
            M    G  P NV  Y   L       DG+     SL+R +E           C+P +  
Sbjct: 220 VMKGH-GCSP-NVVVYTVIL-------DGVCR-FGSLERALELLGEMEKESGDCSPNVVT 269

Query: 280 FKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEM 339
           +    + C     L  A  I   M    G  P+    ++++  +C       A KL+D++
Sbjct: 270 YTSMIQSCCEKGKLMEALEILDRMRA-CGCAPNRVTVSILMKGFCAEGRVEEAFKLIDKV 328

Query: 340 VYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDP 399
           V  G     + Y+ L   LV  + L EA  LF  M+ N    +   C   ++        
Sbjct: 329 VAGGNVSYGECYSSLIVSLVGNKNLQEAEKLFRRMLANAVKPDGLACGTLIKALCLEGRV 388

Query: 400 YVAIKFWKYM--IENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQV-TPFAL 456
                 +     +E      S+  ++L+ GL       EAVK A+ M ++GIQ+ TP+  
Sbjct: 389 LDGFHLFDEFENMEGLSYLDSDIYSILLVGLSQKRHSVEAVKLARLMVDRGIQLKTPYFD 448

Query: 457 SKLKQILIKARKEAV 471
           S ++ +     KE V
Sbjct: 449 SIVEHLKESGDKEIV 463


>gi|302792086|ref|XP_002977809.1| hypothetical protein SELMODRAFT_52561 [Selaginella moellendorffii]
 gi|300154512|gb|EFJ21147.1| hypothetical protein SELMODRAFT_52561 [Selaginella moellendorffii]
          Length = 419

 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 63/233 (27%), Positives = 106/233 (45%), Gaps = 8/233 (3%)

Query: 148 ADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV---DGRIKPDN 204
           A  V  A + F  + + G K ++ + NSLL+ +C++G+   AW+    +   DG I PD 
Sbjct: 74  AGYVDRACSVFQEISKRGLKPELVSYNSLLAVLCKNGRRYAAWKLFLAMKEEDG-ISPDC 132

Query: 205 DTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNS 264
            TY+IL+       D+A   + F EM ++ G  PD V    S ++ LL  C  + +T++ 
Sbjct: 133 VTYSILITNTGDGSDIAEPCRLFLEM-MDSGCSPDIV--VHSSMVNLLFKCGDVRQTLDF 189

Query: 265 LKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYC 324
            K+M +RG    +  F       +    +  A  ++  +    G+     +YN +I  + 
Sbjct: 190 FKQMAQRGKPLSVAVFTSIIFSYVRSGRMDSAYLLFRGLRDVSGY-VHQRIYNALICGFA 248

Query: 325 YSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKN 377
             ++   A  L  EM  N   PD  TY  +   L +  KL++A     EM  N
Sbjct: 249 NIDDVLHAFSLFKEMKANSFAPDQVTYRTMVALLARHAKLFQAQDTLEEMKAN 301



 Score = 47.8 bits (112), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 62/295 (21%), Positives = 120/295 (40%), Gaps = 11/295 (3%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVLS--LATFASVFSSYVVADRVKDAITTFDV 160
           ++N ++ +L KN    A W    +MK+E+ +S    T++ + ++      + +    F  
Sbjct: 98  SYNSLLAVLCKNGRRYAAWKLFLAMKEEDGISPDCVTYSILITNTGDGSDIAEPCRLFLE 157

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDN-DTYAILLEGWEKERD 219
           M   GC  D+   +S+++ + + G       F + +  R KP +   +  ++  + +   
Sbjct: 158 MMDSGCSPDIVVHSSMVNLLFKCGDVRQTLDFFKQMAQRGKPLSVAVFTSIIFSYVRSGR 217

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTF 279
           + +A   F  +    G+    +  Y++ LI      D +    +  K M      P    
Sbjct: 218 MDSAYLLFRGLRDVSGYVHQRI--YNA-LICGFANIDDVLHAFSLFKEMKANSFAPDQVT 274

Query: 280 FKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEM 339
           ++           L  A+     M    GF PD   YN ++++   + +   A KLL ++
Sbjct: 275 YRTMVALLARHAKLFQAQDTLEEMKAN-GFTPDLVTYNKLMAMLGETGDFKGAFKLLQDL 333

Query: 340 VYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYM 394
              G   D  TY+ L   L + RK+  A  LF+E+   EN   H+ C      Y+
Sbjct: 334 ESCGLQADGYTYSALLHNLGRHRKVKTACKLFDEL---EN-RGHKPCAMTYNAYV 384


>gi|308080398|ref|NP_001183938.1| PPR-814a [Zea mays]
 gi|223929924|gb|ACN24620.1| PPR-814a [Zea mays]
          Length = 814

 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 87/377 (23%), Positives = 162/377 (42%), Gaps = 13/377 (3%)

Query: 102 YAWNLVVD-LLGKNCLFDAMWDAIKSMKKENVLS-LATFASVFSSYVVADRVKDAITTFD 159
           +++N++++    K CL D M D    M  + +   + TF  +  +Y     +  A+  F+
Sbjct: 360 FSYNIMLNGYATKGCLVD-MTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLDKAMIIFN 418

Query: 160 VMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKER 218
            M  +G K +V    ++++A+CR GK  DA + F +++D  + PD   Y  L++G+    
Sbjct: 419 EMRDHGVKPNVLTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHG 478

Query: 219 DVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMT 278
            +  AK+   E ++  G   D V    S +I  L     + +  N     +  G +P   
Sbjct: 479 SLLKAKELISE-IMNNGMHLDIV--LFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAV 535

Query: 279 FFKLAFEE-CLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLD 337
            + +  +  CL G+ +  A  ++ AMV   G  P+  +Y  +++ YC        + L  
Sbjct: 536 VYSMLMDGYCLVGK-MEKALRVFDAMVSA-GIEPNDVVYGTLVNGYCKIGRIDEGLSLFR 593

Query: 338 EMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSD 397
           EM+  G  P    YNI+ + L +  +   A   F+EM ++   +N       +R    + 
Sbjct: 594 EMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGLFKNR 653

Query: 398 DPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALS 457
               AI  +K +   +      T N ++AG+     + EA      ++  G+       S
Sbjct: 654 CFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPCVVTYS 713

Query: 458 KLKQILIKARKEAVYEE 474
            +   LI   KE + EE
Sbjct: 714 IMITNLI---KEGLVEE 727



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 78/303 (25%), Positives = 135/303 (44%), Gaps = 9/303 (2%)

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV--DGRI-KPDNDTYAILLEGWEKERD 219
           + GC  DVF+ + LL ++C  GK+  A   LR++   G +  PD   Y  +++G+ KE D
Sbjct: 175 ELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYNTVIDGFFKEGD 234

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGM-T 278
           V  A   F EMV + G  PD V  Y S +  L K    + +    L++M+ +G  P   T
Sbjct: 235 VNKACDLFKEMV-QRGIPPDFV-TYSSVVHALCKA-RAMDKAEAFLRQMVNKGVLPNNWT 291

Query: 279 FFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDE 338
           +  L +    TGQ  + A  ++  M  R    PD   +NM++   C   +   A  + D 
Sbjct: 292 YNNLIYGYSSTGQ-WKEAVRVFKEM-RRQSILPDVVTFNMLMGSLCKYGKIKEARDVFDT 349

Query: 339 MVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDD 398
           M   G  PD+ +YNI+         L + + LF+ M+ +            ++ Y +   
Sbjct: 350 MAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGM 409

Query: 399 PYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSK 458
              A+  +  M ++       T   ++A LC +  + +A++    M ++G+    +A   
Sbjct: 410 LDKAMIIFNEMRDHGVKPNVLTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHC 469

Query: 459 LKQ 461
           L Q
Sbjct: 470 LIQ 472



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 65/288 (22%), Positives = 116/288 (40%), Gaps = 39/288 (13%)

Query: 125 KSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRD 183
           K M+++++L  + TF  +  S     ++K+A   FD M   G   DVF+ N +L+     
Sbjct: 313 KEMRRQSILPDVVTFNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATK 372

Query: 184 GKTIDAWQFLRVVDG-RIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVP 242
           G  +D      ++ G  I P   T+ +L++ +     +  A   F EM  + G  P NV 
Sbjct: 373 GCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLDKAMIIFNEMR-DHGVKP-NVL 430

Query: 243 AYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEE-CLTGQNLRGAEFIWG 301
            Y + +  L +    + + +    +M+++G  P    +    +  C  G  L+  E I  
Sbjct: 431 TYTTVIAALCR-IGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELISE 489

Query: 302 AM--------------------VGR-------------IGFRPDTHMYNMMISLYCYSNE 328
            M                    +GR             +G  P   +Y+M++  YC   +
Sbjct: 490 IMNNGMHLDIVLFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGK 549

Query: 329 TGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK 376
              A+++ D MV  G  P+   Y  L     K  ++ E   LF EM++
Sbjct: 550 MEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQ 597



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 69/281 (24%), Positives = 109/281 (38%), Gaps = 16/281 (5%)

Query: 178 SAICRDGKTIDAWQFLRVVDGR-----IKPDNDTYAILLEGWEKERDVANAKKTFGEMVI 232
           SA CR G  +    F R          + P + TYAIL++   +      A   FG++ +
Sbjct: 80  SAACRSGPALAVALFNRAASRAQGPRVLSPTSHTYAILMDCCTRAHRPELALAFFGQL-L 138

Query: 233 EVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMER----GCNPGMTFFKLAFEE-C 287
             G   D + A       LLKG      T  +L  ++ R    GC P +  + +  +  C
Sbjct: 139 RTGLRVDIIIANH-----LLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLC 193

Query: 288 LTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPD 347
             G++ +  + +     G     PD   YN +I  +    +   A  L  EMV  G  PD
Sbjct: 194 DQGKSGQADDLLRMMAEGGAVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPD 253

Query: 348 IQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWK 407
             TY+ +   L K R + +A     +MV    + N+      +  Y  +     A++ +K
Sbjct: 254 FVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFK 313

Query: 408 YMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448
            M          T N+L+  LC    + EA      MA KG
Sbjct: 314 EMRRQSILPDVVTFNMLMGSLCKYGKIKEARDVFDTMAMKG 354



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 122/290 (42%), Gaps = 17/290 (5%)

Query: 99  HSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSL-ATFASVFSSYVVA--------- 148
           H       V D+   + L  ++ D  KS + +++L + A   +V S  VVA         
Sbjct: 171 HRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYNTVIDGFF 230

Query: 149 --DRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGRIKPDND 205
               V  A   F  M Q G   D    +S++ A+C+      A  FLR +V+  + P+N 
Sbjct: 231 KEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPNNW 290

Query: 206 TYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSL 265
           TY  L+ G+        A + F EM  +    PD V  ++  + +L K    I E  +  
Sbjct: 291 TYNNLIYGYSSTGQWKEAVRVFKEMRRQ-SILPD-VVTFNMLMGSLCK-YGKIKEARDVF 347

Query: 266 KRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCY 325
             M  +G NP +  + +      T   L     ++  M+G  G  P    +N++I  Y  
Sbjct: 348 DTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGD-GIAPVICTFNVLIKAYAN 406

Query: 326 SNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
                 AM + +EM  +G  P++ TY  +   L +  K+ +A   FN+M+
Sbjct: 407 CGMLDKAMIIFNEMRDHGVKPNVLTYTTVIAALCRIGKMDDAMEKFNQMI 456



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 81/357 (22%), Positives = 150/357 (42%), Gaps = 22/357 (6%)

Query: 104 WNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLA-TFASVFSSYVVADRVKDAITTFDVME 162
           ++ VV  L K    D     ++ M  + VL    T+ ++   Y    + K+A+  F  M 
Sbjct: 257 YSSVVHALCKARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMR 316

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIK-PDNDTYAILLEGWEKERDVA 221
           +     DV   N L+ ++C+ GK  +A      +  + + PD  +Y I+L G+  +  + 
Sbjct: 317 RQSILPDVVTFNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLV 376

Query: 222 NAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPG-MTFF 280
           +    F ++++  G  P  V    + LI     C  + + +     M + G  P  +T+ 
Sbjct: 377 DMTDLF-DLMLGDGIAP--VICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPNVLTYT 433

Query: 281 KLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMV 340
            +    C  G+ +  A   +  M+ + G  PD + Y+ +I  +C       A +L+ E++
Sbjct: 434 TVIAALCRIGK-MDDAMEKFNQMIDQ-GVAPDKYAYHCLIQGFCTHGSLLKAKELISEIM 491

Query: 341 YNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPY 400
            NG   DI  ++ +   L K  ++ +A  +F+  V   NV  H     AV VY    D Y
Sbjct: 492 NNGMHLDIVLFSSIINNLCKLGRVMDAQNIFDLTV---NVGLHPT---AV-VYSMLMDGY 544

Query: 401 V-------AIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQ 450
                   A++ +  M+             LV G C +  + E +   + M +KGI+
Sbjct: 545 CLVGKMEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIK 601



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 65/269 (24%), Positives = 109/269 (40%), Gaps = 34/269 (12%)

Query: 133 LSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ- 191
           L +  F+S+ ++     RV DA   FD+    G        + L+   C  GK   A + 
Sbjct: 497 LDIVLFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRV 556

Query: 192 FLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITL 251
           F  +V   I+P++  Y  L+ G+ K   +      F EM ++ G  P  +     Y I +
Sbjct: 557 FDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREM-LQKGIKPSTI----LYNIII 611

Query: 252 LKGCDGIYE---TVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRG---------AEFI 299
               DG++E   TV +  +  E      MT   +A  +C     LRG         A F+
Sbjct: 612 ----DGLFEAGRTVPAKVKFHE------MTESGIAMNKCTYSIVLRGLFKNRCFDEAIFL 661

Query: 300 WGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLV 359
           +  +   +  + D    N MI+    +     A  L   +  +G  P + TY+I+   L+
Sbjct: 662 FKELRA-MNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPCVVTYSIMITNLI 720

Query: 360 KGRKLWEASGLFNEMVK-----NENVLNH 383
           K   + EA  +F+ M       +  +LNH
Sbjct: 721 KEGLVEEAEDMFSSMQNAGCEPDSRLLNH 749


>gi|449444522|ref|XP_004140023.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g79540-like [Cucumis sativus]
          Length = 783

 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 109/460 (23%), Positives = 172/460 (37%), Gaps = 51/460 (11%)

Query: 18  HNKRKRSTFASHLDVPNLPPTIKTLCEIIANTPSPTVEDVLDKTLIRVSQETVEQVLKFS 77
           H   K + F S+    N P         I  T  P +ED L     R+   T+  VL+  
Sbjct: 14  HVVPKPTLFHSYHSRTN-PIATSIEVSTIIETLDP-MEDGLKVISSRIRSYTITSVLQ-- 69

Query: 78  YSHPGPAVKF--FRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENV-LS 134
              P   + F  F WS    + +      +L++  L K   F+  W  ++ +K   + +S
Sbjct: 70  -EQPDTRLGFRLFIWSLKSWHLR-CRTVQDLIIGKLIKENAFELYWKVLQELKNSAIKIS 127

Query: 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FL 193
              F+ +  +Y  A   + A+ +F +M  + CK D+FA N +L  + R    + A   + 
Sbjct: 128 SEAFSVLIEAYSEAGMDEKAVESFGLMRDFDCKPDLFAFNLILHFLVRKEAFLLALAVYN 187

Query: 194 RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLK 253
           +++   + PD  TY IL+ G  K     +A   F EM      D   +P    Y I L  
Sbjct: 188 QMLKCNLNPDVVTYGILIHGLCKTCKTQDALVLFDEMT-----DRGILPNQIIYSIVLSG 242

Query: 254 GCDG--IYETVNSLKRMMERGCNPGM--------------------TFFKLAFEE----- 286
            C    I++      +M   GCN  +                    T  +L  ++     
Sbjct: 243 LCQAKKIFDAQRLFSKMRASGCNRDLITYNVLLNGFCKSGYLDDAFTLLQLLTKDGHILG 302

Query: 287 -----CLTGQNLRGAEF----IWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLD 337
                CL     R   +    +W   + R   +PD  +Y +MI           A+ LL 
Sbjct: 303 VIGYGCLINGLFRARRYEEAHMWYQKMLRENIKPDVMLYTIMIRGLSQEGRVTEALTLLG 362

Query: 338 EMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSD 397
           EM   G  PD   YN L +       L EA  L  E+ K++   N+      +     + 
Sbjct: 363 EMTERGLRPDTICYNALIKGFCDMGYLDEAESLRLEISKHDCFPNNHTYSILICGMCKNG 422

Query: 398 DPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEA 437
               A   +K M +  C     T N L+ GLC  + L EA
Sbjct: 423 LINKAQHIFKEMEKLGCLPSVVTFNSLINGLCKANRLEEA 462



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 80/346 (23%), Positives = 141/346 (40%), Gaps = 65/346 (18%)

Query: 107 VVDLLGKNCLFDAMWDA---------IKSMKKENVL-SLATFASVFSSYVVADRVKDAIT 156
           ++ ++G  CL + ++ A          + M +EN+   +  +  +        RV +A+T
Sbjct: 300 ILGVIGYGCLINGLFRARRYEEAHMWYQKMLRENIKPDVMLYTIMIRGLSQEGRVTEALT 359

Query: 157 TFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR--IKPDNDTYAILLEGW 214
               M + G + D    N+L+   C D   +D  + LR+   +    P+N TY+IL+ G 
Sbjct: 360 LLGEMTERGLRPDTICYNALIKGFC-DMGYLDEAESLRLEISKHDCFPNNHTYSILICGM 418

Query: 215 EKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYL-------------------------- 248
            K   +  A+  F EM  ++G  P +V  ++S +                          
Sbjct: 419 CKNGLINKAQHIFKEME-KLGCLP-SVVTFNSLINGLCKANRLEEARLLFYQMEIVRKPS 476

Query: 249 --ITLLKGCDGIYETVNSLKRMMERGCNPGMTF--FKLAFEECLTGQNLRGAEFIWGAMV 304
             + L +G D +++ + SL+ MMER C  GM    +KL  +                  +
Sbjct: 477 LFLRLSQGTDKVFD-IASLQVMMERLCESGMILKAYKLLMQ------------------L 517

Query: 305 GRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKL 364
              G  PD   YN++I+ +C       A KL  EM   G  PD  TY  L + L +  + 
Sbjct: 518 VDSGVLPDIRTYNILINGFCKFGNINGAFKLFKEMQLKGHMPDSVTYGTLIDGLYRAGRN 577

Query: 365 WEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFW-KYM 409
            +A  +F +MVK   V      +  +      ++  +A+  W KY+
Sbjct: 578 EDALEIFEQMVKKGCVPESSTYKTIMTWSCRENNISLALSVWMKYL 623



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 95/402 (23%), Positives = 157/402 (39%), Gaps = 37/402 (9%)

Query: 103 AWNLVVDLLGKNC-------LFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAI 155
            + +++  L K C       LFD M D  + +    ++    ++ V S    A ++ DA 
Sbjct: 200 TYGILIHGLCKTCKTQDALVLFDEMTD--RGILPNQII----YSIVLSGLCQAKKIFDAQ 253

Query: 156 TTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV--DGRIKPDNDTYAILLEG 213
             F  M   GC  D+   N LL+  C+ G   DA+  L+++  DG I      Y  L+ G
Sbjct: 254 RLFSKMRASGCNRDLITYNVLLNGFCKSGYLDDAFTLLQLLTKDGHI-LGVIGYGCLING 312

Query: 214 WEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGC 273
             + R    A   + +M+ E    PD V  Y + +I  L     + E +  L  M ERG 
Sbjct: 313 LFRARRYEEAHMWYQKMLRE-NIKPD-VMLY-TIMIRGLSQEGRVTEALTLLGEMTERGL 369

Query: 274 NPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAM 333
            P    +    +       L  AE +   +     F P+ H Y+++I   C +     A 
Sbjct: 370 RPDTICYNALIKGFCDMGYLDEAESLRLEISKHDCF-PNNHTYSILICGMCKNGLINKAQ 428

Query: 334 KLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM-------------VKNENV 380
            +  EM   G  P + T+N L   L K  +L EA  LF +M                + V
Sbjct: 429 HIFKEMEKLGCLPSVVTFNSLINGLCKANRLEEARLLFYQMEIVRKPSLFLRLSQGTDKV 488

Query: 381 LNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKY 440
            +  + +  +    +S     A K    ++++       T N+L+ G C    +  A K 
Sbjct: 489 FDIASLQVMMERLCESGMILKAYKLLMQLVDSGVLPDIRTYNILINGFCKFGNINGAFKL 548

Query: 441 AKGMAEKGIQVTPFALSKLKQILIKARKE----AVYEELLKK 478
            K M  KG          L   L +A +      ++E+++KK
Sbjct: 549 FKEMQLKGHMPDSVTYGTLIDGLYRAGRNEDALEIFEQMVKK 590


>gi|222628658|gb|EEE60790.1| hypothetical protein OsJ_14375 [Oryza sativa Japonica Group]
          Length = 754

 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 69/302 (22%), Positives = 126/302 (41%), Gaps = 39/302 (12%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRV 195
            F ++ ++Y     +  ++  F+ M + G   D+   ++++SA CR G+  DA + F  +
Sbjct: 330 VFNTLINAYARLGMMDKSLLMFEDMTKQGVNPDIITFSTVISAFCRLGRLDDAMEKFNHM 389

Query: 196 VDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
           +D  + PD   Y+ L++G    RD+  AK+   +M+ + G  P  +  + S         
Sbjct: 390 IDTGVPPDTAVYSCLIQGQCNRRDLVKAKELISDMLSK-GIPPPCIKFFTS--------- 439

Query: 256 DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHM 315
                 +N+L                     C  G+   G + +   ++   G RP+   
Sbjct: 440 -----IINNL---------------------CKEGRVAEGKDVV--DLIIHTGQRPNLIT 471

Query: 316 YNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
           +N ++  YC       A+ LLD M   G  PDI TYN L +   K  ++ +A  LF +M+
Sbjct: 472 FNSLVDGYCLVGNMKEAVGLLDSMESVGVEPDIYTYNTLVDGYCKHGRIDDALTLFRDML 531

Query: 376 KNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLP 435
                L   +    +     +    VA + +  MIE+  +    T   ++ GLC  +   
Sbjct: 532 HKRVTLTSVSYNIILHGLFQARRTIVAKEMFHEMIESGMAVSIHTYATVLGGLCRNNCTD 591

Query: 436 EA 437
           EA
Sbjct: 592 EA 593



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 81/357 (22%), Positives = 141/357 (39%), Gaps = 44/357 (12%)

Query: 131 NVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAW 190
           +V S       FS     D+  D    F  ME+ G   +V   +SL++ +C+  +   A 
Sbjct: 152 DVFSYNALIDGFSKEGEVDKAHD---LFYKMEEQGIMPNVVTYSSLINGLCKTKEMDKAE 208

Query: 191 QFLR-VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLI 249
           + LR +V   ++P+N TY  L+ G+        + + F EM   +   PD V   +S++ 
Sbjct: 209 RVLRQMVGAGVRPNNMTYNCLIHGYSTSGMWKESVRVFKEMSSSL-LVPD-VGNCNSFMT 266

Query: 250 TLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGF 309
            L K    I E  +    M+ +G  P +  +        T   + G + ++  MV   G 
Sbjct: 267 ALCKH-GRIKEARDIFDSMVLKGPKPDVISYGALLHGYATAGCIAGMDNLFNVMVCE-GV 324

Query: 310 RPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASG 369
            PD H++N +I+ Y        ++ + ++M   G  PDI T++ +     +  +L +A  
Sbjct: 325 VPDRHVFNTLINAYARLGMMDKSLLMFEDMTKQGVNPDIITFSTVISAFCRLGRLDDAME 384

Query: 370 LFNEMVKNE--------NVLNHENC--------RAAVRVYMDSDDPYVAIKFWKYMIENH 413
            FN M+           + L    C        +  +   +    P   IKF+  +I N 
Sbjct: 385 KFNHMIDTGVPPDTAVYSCLIQGQCNRRDLVKAKELISDMLSKGIPPPCIKFFTSIINNL 444

Query: 414 CSD------------LSETG--------NLLVAGLCDMHMLPEAVKYAKGMAEKGIQ 450
           C +            +  TG        N LV G C +  + EAV     M   G++
Sbjct: 445 CKEGRVAEGKDVVDLIIHTGQRPNLITFNSLVDGYCLVGNMKEAVGLLDSMESVGVE 501



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 76/342 (22%), Positives = 136/342 (39%), Gaps = 6/342 (1%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRV 195
           T+  +   Y  +   K+++  F  M       DV   NS ++A+C+ G+  +A   F  +
Sbjct: 225 TYNCLIHGYSTSGMWKESVRVFKEMSSSLLVPDVGNCNSFMTALCKHGRIKEARDIFDSM 284

Query: 196 VDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
           V    KPD  +Y  LL G+     +A     F  MV E G  PD      + LI      
Sbjct: 285 VLKGPKPDVISYGALLHGYATAGCIAGMDNLFNVMVCE-GVVPDR--HVFNTLINAYARL 341

Query: 256 DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHM 315
             + +++   + M ++G NP +  F            L  A   +  M+   G  PDT +
Sbjct: 342 GMMDKSLLMFEDMTKQGVNPDIITFSTVISAFCRLGRLDDAMEKFNHMID-TGVPPDTAV 400

Query: 316 YNMMISLYCYSNETGAAMKLLDEMVYNGAFPD-IQTYNILFEFLVKGRKLWEASGLFNEM 374
           Y+ +I   C   +   A +L+ +M+  G  P  I+ +  +   L K  ++ E   + + +
Sbjct: 401 YSCLIQGQCNRRDLVKAKELISDMLSKGIPPPCIKFFTSIINNLCKEGRVAEGKDVVDLI 460

Query: 375 VKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHML 434
           +      N     + V  Y    +   A+     M          T N LV G C    +
Sbjct: 461 IHTGQRPNLITFNSLVDGYCLVGNMKEAVGLLDSMESVGVEPDIYTYNTLVDGYCKHGRI 520

Query: 435 PEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELL 476
            +A+   + M  K + +T  + + +   L +AR+  V +E+ 
Sbjct: 521 DDALTLFRDMLHKRVTLTSVSYNIILHGLFQARRTIVAKEMF 562



 Score = 47.0 bits (110), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 64/267 (23%), Positives = 104/267 (38%), Gaps = 12/267 (4%)

Query: 116 LFDAMW---DAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKH---D 169
           LFD +    DA    +  N L L+  A    S    D    A+  F  M++  C      
Sbjct: 59  LFDELLLRRDAPAPARGLNEL-LSALARAPPSAACRDVPALAVELFKRMDRCACPEAAPT 117

Query: 170 VFALNSLLSAICRDGKT-IDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFG 228
           ++  N L++   R  +  +    F R++   + PD  +Y  L++G+ KE +V  A   F 
Sbjct: 118 IYTYNILINCYRRARRPDLGLPVFGRLLRTGLGPDVFSYNALIDGFSKEGEVDKAHDLFY 177

Query: 229 EMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECL 288
           +M  E G  P NV  Y S +  L K  + + +    L++M+  G  P    +        
Sbjct: 178 KME-EQGIMP-NVVTYSSLINGLCKTKE-MDKAERVLRQMVGAGVRPNNMTYNCLIHGYS 234

Query: 289 TGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDI 348
           T    + +  ++  M   +   PD    N  ++  C       A  + D MV  G  PD+
Sbjct: 235 TSGMWKESVRVFKEMSSSL-LVPDVGNCNSFMTALCKHGRIKEARDIFDSMVLKGPKPDV 293

Query: 349 QTYNILFEFLVKGRKLWEASGLFNEMV 375
            +Y  L         +     LFN MV
Sbjct: 294 ISYGALLHGYATAGCIAGMDNLFNVMV 320



 Score = 40.4 bits (93), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 35/150 (23%), Positives = 60/150 (40%), Gaps = 1/150 (0%)

Query: 299 IWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFL 358
           ++G ++ R G  PD   YN +I  +    E   A  L  +M   G  P++ TY+ L   L
Sbjct: 140 VFGRLL-RTGLGPDVFSYNALIDGFSKEGEVDKAHDLFYKMEEQGIMPNVVTYSSLINGL 198

Query: 359 VKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLS 418
            K +++ +A  +  +MV      N+      +  Y  S     +++ +K M  +      
Sbjct: 199 CKTKEMDKAERVLRQMVGAGVRPNNMTYNCLIHGYSTSGMWKESVRVFKEMSSSLLVPDV 258

Query: 419 ETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448
              N  +  LC    + EA      M  KG
Sbjct: 259 GNCNSFMTALCKHGRIKEARDIFDSMVLKG 288


>gi|115448805|ref|NP_001048182.1| Os02g0759500 [Oryza sativa Japonica Group]
 gi|46805701|dbj|BAD17102.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|47497356|dbj|BAD19395.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113537713|dbj|BAF10096.1| Os02g0759500 [Oryza sativa Japonica Group]
 gi|125583759|gb|EAZ24690.1| hypothetical protein OsJ_08460 [Oryza sativa Japonica Group]
 gi|215704115|dbj|BAG92955.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215766866|dbj|BAG99094.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 555

 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 98/423 (23%), Positives = 163/423 (38%), Gaps = 29/423 (6%)

Query: 47  ANTPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNL 106
           A   S   E  LD     ++   V  VL         A +FF W+++Q   +H    +N 
Sbjct: 92  AAGSSEGTEAALDALGAELTTPLVADVLHRLRYDEKLAFRFFVWASHQDGYEHEAATYND 151

Query: 107 VVDLLG----KNCLFDAMWDAIKSMKKENVLSLAT--FASVFSSYVVADRVKDAITTFDV 160
           V+D+L     K   F  + D +  MK+    S+       +  +Y               
Sbjct: 152 VIDILSGTRYKARQFGVLCDVLDHMKRRRTRSVPVDDLLGILRAYTEKHLTHLRKLAKKR 211

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDV 220
             +     +  ALN LL A C+ G   +A      V  ++  + +TY+IL  GW + RD 
Sbjct: 212 RVRMRTPPETDALNVLLDAFCKCGMVREAEVVFSRVKRKLLGNAETYSILFFGWCRARDP 271

Query: 221 ANAKKTFGEMVIEVGWDPDNV---PAYDSYLIT-LLKGCDGIYETVNSLKRMMERGCNPG 276
             A K   EM I++   P+N     A DS+    L+     ++E + +    +       
Sbjct: 272 KRAMKVLEEM-IQMKHTPENFTYNAAIDSFCSAGLVSEARDLFEFMRTEGSTISSPTAKT 330

Query: 277 MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLL 336
            +    A  +   GQ     E I  + + + G  PD   Y  +I      ++  AA  +L
Sbjct: 331 YSIMIAALAK--AGQMEECFELI--SEMRKCGCMPDVSTYKDLIEGMLLVDKLDAAYCVL 386

Query: 337 DEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVY--- 393
           DEM   G  PDI TYN   + L   +K  +A  L   M++        +C  +V  Y   
Sbjct: 387 DEMAKAGFPPDIVTYNCFLKVLCGLQKADDALELCERMIE-------AHCEPSVHTYNML 439

Query: 394 ----MDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
                +  +P  AI  W  M +  C    +T   ++ GL D     +A      +  +G+
Sbjct: 440 MVMFFEMREPDRAINIWIEMDKRGCHRAVDTYETMIDGLFDSGRTEDATALLDEVINRGM 499

Query: 450 QVT 452
           +++
Sbjct: 500 KLS 502


>gi|357130032|ref|XP_003566662.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 859

 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 76/312 (24%), Positives = 131/312 (41%), Gaps = 6/312 (1%)

Query: 129 KENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTID 188
           K ++  L +++ +   Y    R  D    F  M   G   +    N L+SA  + G   +
Sbjct: 398 KGHMPDLVSYSILLHGYATEGRFADMNNLFHSMADKGIVANCHCFNILISAHAKRGMMDE 457

Query: 189 AWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSY 247
           A      + G+ ++PD  TY+ L+  + +   +A+A + F +M I +G +P+ V  Y S 
Sbjct: 458 AMLVFTEMQGQGVRPDVVTYSTLISAFCRMGRLADAMEKFSQM-ISIGLEPNTV-VYHSL 515

Query: 248 LITLLKGCDGIYETVNSLKRMMERGC-NPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGR 306
           +       D + +    +  MM +G   P + FF            +  A  ++  +V  
Sbjct: 516 IHGFCMHGD-LVKAKELVSEMMSKGIPRPNIVFFSSIIHSLCNEGRVMDAHDVFN-LVIH 573

Query: 307 IGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWE 366
           IG RP    +N +I  YC   +   A  +LD MV  G  PD+ TYN L     K  K+ +
Sbjct: 574 IGDRPTIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTYNTLVSGYCKSGKIDD 633

Query: 367 ASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVA 426
              LF EM+  +           +     +     A K +  MI++  +   +T  +L+ 
Sbjct: 634 GLILFREMLHKKVKPTTVTYSIVLDGLFHAGRTSAAKKMFHEMIDSGTAVDIDTYKILLK 693

Query: 427 GLCDMHMLPEAV 438
           GLC   +  EA+
Sbjct: 694 GLCRNDLTDEAI 705



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 64/278 (23%), Positives = 119/278 (42%), Gaps = 10/278 (3%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKEN---VLSLATFASVFSSYVVADRVKDAITTFD 159
           ++N V+  L  +       D ++ M KE       + +F +V   +     V  A    +
Sbjct: 229 SYNTVIKSLCGDSRSQEALDMVQRMAKEGGRCSPDVVSFNTVIHGFFKQGEVSKACNLIN 288

Query: 160 VMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYAILLEGWEKER 218
            M Q G + DV   NS++ A+C+      A   LR +VD  ++PD  TY  ++ G+    
Sbjct: 289 EMVQKGVEPDVVTYNSIVDALCKARAMDKAELVLRQMVDKGVEPDGLTYTAIIHGYSCSG 348

Query: 219 DVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLK-GCDGIYETVNSLKRMMERGCNPGM 277
               + K F +M  + G  P  +  ++S++ +L K G     E +   + M  +G  P +
Sbjct: 349 HWKESAKMFRKMTSK-GLIP-GIVTFNSFMSSLCKHGRSKDAEEI--FQYMTTKGHMPDL 404

Query: 278 TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLD 337
             + +      T         ++ +M  + G   + H +N++IS +        AM +  
Sbjct: 405 VSYSILLHGYATEGRFADMNNLFHSMADK-GIVANCHCFNILISAHAKRGMMDEAMLVFT 463

Query: 338 EMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
           EM   G  PD+ TY+ L     +  +L +A   F++M+
Sbjct: 464 EMQGQGVRPDVVTYSTLISAFCRMGRLADAMEKFSQMI 501



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 72/313 (23%), Positives = 135/313 (43%), Gaps = 20/313 (6%)

Query: 148 ADRVKDAI-TTFDVMEQYGCKHDVFALNSLLSAICRDGKT---IDAWQFLRVVDGRIKPD 203
           A R  +A+      M   GC  +  + N+++ ++C D ++   +D  Q +    GR  PD
Sbjct: 204 AKRTDEAVDVLLHRMSDLGCVPNAISYNTVIKSLCGDSRSQEALDMVQRMAKEGGRCSPD 263

Query: 204 NDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVN 263
             ++  ++ G+ K+ +V+ A     EMV + G +PD V  Y+S +  L K    + +   
Sbjct: 264 VVSFNTVIHGFFKQGEVSKACNLINEMV-QKGVEPD-VVTYNSIVDALCKA-RAMDKAEL 320

Query: 264 SLKRMMERGCNP-GMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISL 322
            L++M+++G  P G+T+  +      +G     A+ ++  M  + G  P    +N  +S 
Sbjct: 321 VLRQMVDKGVEPDGLTYTAIIHGYSCSGHWKESAK-MFRKMTSK-GLIPGIVTFNSFMSS 378

Query: 323 YCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM-----VKN 377
            C    +  A ++   M   G  PD+ +Y+IL        +  + + LF+ M     V N
Sbjct: 379 LCKHGRSKDAEEIFQYMTTKGHMPDLVSYSILLHGYATEGRFADMNNLFHSMADKGIVAN 438

Query: 378 ENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEA 437
            +  N      A R  MD      A+  +  M          T + L++  C M  L +A
Sbjct: 439 CHCFNILISAHAKRGMMDE-----AMLVFTEMQGQGVRPDVVTYSTLISAFCRMGRLADA 493

Query: 438 VKYAKGMAEKGIQ 450
           ++    M   G++
Sbjct: 494 MEKFSQMISIGLE 506



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 62/246 (25%), Positives = 101/246 (41%), Gaps = 42/246 (17%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           ++ TF S+   Y +  +++ A    D M   G + DV   N+L+S  C+ GK  D     
Sbjct: 579 TIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTYNTLVSGYCKSGKIDDGLILF 638

Query: 194 R-VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
           R ++  ++KP   TY+I+L+G       + AKK F EM+     D       D+Y I LL
Sbjct: 639 REMLHKKVKPTTVTYSIVLDGLFHAGRTSAAKKMFHEMI-----DSGTAVDIDTYKI-LL 692

Query: 253 KGCDGIYETVNSLKRMMERGCNPGMTFF-KLAFEECLTGQNLRGAEFIWGAMVGRIGFRP 311
           KG        N L        +  +T F KL   +C                      + 
Sbjct: 693 KGL-----CRNDLT-------DEAITLFHKLGAMDC----------------------KF 718

Query: 312 DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLF 371
           D  + N +I+          A  L   +  +G  P++ TY ++   L+K   + EA  +F
Sbjct: 719 DITILNTVINALYKVRRREEANDLFAAISTSGLVPNVSTYGVMIHNLLKEGSVEEADTMF 778

Query: 372 NEMVKN 377
           + M K+
Sbjct: 779 SSMEKS 784


>gi|357477565|ref|XP_003609068.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
 gi|355510123|gb|AES91265.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
          Length = 932

 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 83/351 (23%), Positives = 143/351 (40%), Gaps = 12/351 (3%)

Query: 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDV 160
           + +N+ +  L K    D     +  + +E +   + T+ +V        RV +A      
Sbjct: 331 FTFNIFIQGLCKEGSLDRAVRLLGCVSREGLRPDVVTYNTVICGLCRKSRVVEAEECLHK 390

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYAILLEGWEKERD 219
           M   G + + F  NS++   C+ G  +DA + L+  V    KPD  TY  L+ G+ ++ D
Sbjct: 391 MVNGGFEPNDFTYNSIIDGYCKKGMVVDANRILKDAVFKGFKPDEFTYCSLVNGFCQDGD 450

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG-CDG--IYETVNSLKRMMERGCNPG 276
              A   F + + + G  P ++  Y+    TL+KG C    I   +  +  M E+GC P 
Sbjct: 451 PDQAMAVFKDGLGK-GLRP-SIIVYN----TLIKGLCQQGLILPALQLMNEMAEKGCKPD 504

Query: 277 MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLL 336
           +  + L          L  A  + G  + + G  PD   YN ++  YC   +  +A++L+
Sbjct: 505 IWTYNLIINGLCKMGCLSDANHLIGDAITK-GCIPDIFTYNTLVDGYCRQLKLDSAIELV 563

Query: 337 DEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDS 396
           + M   G  PD+ TYN L   L K  K  E   +F  M +     N       +    +S
Sbjct: 564 NRMWSQGMTPDVITYNTLLNGLCKTAKSEEVMEIFKAMTEKGCAPNIITYNTIIESLCNS 623

Query: 397 DDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEK 447
                A+     M     +    +   L+ G C +  L  A    +GM ++
Sbjct: 624 KKVNEAVDLLGEMKSKGLTPDVVSFGTLITGFCKVGDLDGAYGLFRGMEKQ 674



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 83/391 (21%), Positives = 162/391 (41%), Gaps = 42/391 (10%)

Query: 98  KHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKK--ENVLSLATFASVFSSYVVADRVKDAI 155
           KH+ + +  ++  LG +  F+ M + +  M+   +N L    +      Y    ++++A+
Sbjct: 116 KHTLFTYKSMLQKLGFHGKFNEMENLLSEMRSNLDNTLLEGVYVEAMRFYGRKGKIQEAV 175

Query: 156 TTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAI----- 209
            TF+ M+ + C   V++ N++++ +   G    A + ++R+ D +++ D  TY I     
Sbjct: 176 DTFERMDLFNCDPSVYSYNAIMNILVEFGYFNQAHKVYMRMKDKKVESDVYTYTIRIKSF 235

Query: 210 ------------------------------LLEGWEKERDVANAKKTFGEMVIEVGWDPD 239
                                         ++ G+ +  D   A++ F EM +E    PD
Sbjct: 236 CRTGRPYAALRLLRNMPVLGCFSNAVAYCTVVTGFYEFGDNDRARELFDEM-LECCLCPD 294

Query: 240 NVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFI 299
            V  ++  +  L K    + E+     ++++RG  P +  F +  +      +L  A  +
Sbjct: 295 -VTTFNKLVHALCKK-GFVLESERLFDKVLKRGVCPNLFTFNIFIQGLCKEGSLDRAVRL 352

Query: 300 WGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLV 359
            G  V R G RPD   YN +I   C  +    A + L +MV  G  P+  TYN + +   
Sbjct: 353 LGC-VSREGLRPDVVTYNTVICGLCRKSRVVEAEECLHKMVNGGFEPNDFTYNSIIDGYC 411

Query: 360 KGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSE 419
           K   + +A+ +  + V      +     + V  +    DP  A+  +K  +         
Sbjct: 412 KKGMVVDANRILKDAVFKGFKPDEFTYCSLVNGFCQDGDPDQAMAVFKDGLGKGLRPSII 471

Query: 420 TGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQ 450
             N L+ GLC   ++  A++    MAEKG +
Sbjct: 472 VYNTLIKGLCQQGLILPALQLMNEMAEKGCK 502



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 81/322 (25%), Positives = 139/322 (43%), Gaps = 22/322 (6%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RV 195
           T+ S+ + +        A+  F      G +  +   N+L+  +C+ G  + A Q +  +
Sbjct: 437 TYCSLVNGFCQDGDPDQAMAVFKDGLGKGLRPSIIVYNTLIKGLCQQGLILPALQLMNEM 496

Query: 196 VDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG- 254
            +   KPD  TY +++ G  K   +++A    G+ + + G  PD +  Y+    TL+ G 
Sbjct: 497 AEKGCKPDIWTYNLIINGLCKMGCLSDANHLIGDAITK-GCIPD-IFTYN----TLVDGY 550

Query: 255 -----CDGIYETVNSLKRMMERGCNPG-MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIG 308
                 D   E VN   RM  +G  P  +T+  L    C T ++    E I+ AM  + G
Sbjct: 551 CRQLKLDSAIELVN---RMWSQGMTPDVITYNTLLNGLCKTAKSEEVME-IFKAMTEK-G 605

Query: 309 FRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEAS 368
             P+   YN +I   C S +   A+ LL EM   G  PD+ ++  L     K   L  A 
Sbjct: 606 CAPNIITYNTIIESLCNSKKVNEAVDLLGEMKSKGLTPDVVSFGTLITGFCKVGDLDGAY 665

Query: 369 GLFNEMVKNENVLNHENC--RAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVA 426
           GLF  M K  +V +H        +  + +  +  +A++ +  M +N C   + T  +L+ 
Sbjct: 666 GLFRGMEKQYDV-SHTTATYNIIISAFSEQLNMKMALRLFSEMKKNGCDPDNYTYRVLID 724

Query: 427 GLCDMHMLPEAVKYAKGMAEKG 448
           G C    + +  K+     EKG
Sbjct: 725 GFCKTGNVNQGYKFLLENIEKG 746



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 82/366 (22%), Positives = 148/366 (40%), Gaps = 56/366 (15%)

Query: 125 KSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDG 184
           K +K+    +L TF            +  A+     + + G + DV   N+++  +CR  
Sbjct: 320 KVLKRGVCPNLFTFNIFIQGLCKEGSLDRAVRLLGCVSREGLRPDVVTYNTVICGLCRKS 379

Query: 185 KTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPA 243
           + ++A + L ++V+G  +P++ TY  +++G+ K+  V +A +   + V + G+ PD    
Sbjct: 380 RVVEAEECLHKMVNGGFEPNDFTYNSIIDGYCKKGMVVDANRILKDAVFK-GFKPDE--- 435

Query: 244 YDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAM 303
                                             T+  L    C  G   + A  ++   
Sbjct: 436 ---------------------------------FTYCSLVNGFCQDGDPDQ-AMAVFKDG 461

Query: 304 VGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRK 363
           +G+ G RP   +YN +I   C       A++L++EM   G  PDI TYN++   L K   
Sbjct: 462 LGK-GLRPSIIVYNTLIKGLCQQGLILPALQLMNEMAEKGCKPDIWTYNLIINGLCKMGC 520

Query: 364 LWEASGLFNEMVKNE--------NVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCS 415
           L +A+ L  + +           N L    CR   ++ +DS     AI+    M     +
Sbjct: 521 LSDANHLIGDAITKGCIPDIFTYNTLVDGYCR---QLKLDS-----AIELVNRMWSQGMT 572

Query: 416 DLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEEL 475
               T N L+ GLC      E ++  K M EKG        + + + L  ++K     +L
Sbjct: 573 PDVITYNTLLNGLCKTAKSEEVMEIFKAMTEKGCAPNIITYNTIIESLCNSKKVNEAVDL 632

Query: 476 LKKCKA 481
           L + K+
Sbjct: 633 LGEMKS 638


>gi|60390261|sp|Q76C99.1|RF1_ORYSI RecName: Full=Protein Rf1, mitochondrial; AltName: Full=Fertility
           restorer; AltName: Full=Protein PPR; AltName:
           Full=Restorer for CMS; Flags: Precursor
 gi|33859440|dbj|BAC77665.2| PPR protein [Oryza sativa Indica Group]
 gi|33859442|dbj|BAC77666.2| Rf1 [Oryza sativa Indica Group]
 gi|41152689|dbj|BAD08214.1| fertility restorer [Oryza sativa Indica Group]
 gi|46091159|dbj|BAD13708.1| PPR protein [Oryza sativa Indica Group]
 gi|47550657|dbj|BAD20283.1| restorer for CMS [Oryza sativa Indica Group]
          Length = 791

 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 98/370 (26%), Positives = 160/370 (43%), Gaps = 33/370 (8%)

Query: 24  STFASHLDVPNLP------PTIKTLCEIIANTPSPTVEDVLDKTLIRVSQETVEQVLK-- 75
           ST+   LD   LP        I  LC+  A   +  V + + K  +     T   +L   
Sbjct: 217 STYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGY 276

Query: 76  FSYSHPGPAVKFFRWSAYQLNDKHSP--YAWNLVVDLLGKN--CL-----FDAMWDAIKS 126
            S   P  A+ F +      +D   P    ++L++D L KN  C+     FD+M    + 
Sbjct: 277 CSSGQPKEAIGFLKK---MRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTK--RG 331

Query: 127 MKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKT 186
           +K E    + T+ ++   Y     + +     D+M + G   D +  + L+ A  + GK 
Sbjct: 332 LKPE----ITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKV 387

Query: 187 IDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYD 245
             A   F ++    + P+  TY  ++    K   V +A   F +M+ E G  P N+  Y+
Sbjct: 388 DQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDE-GLSPGNI-VYN 445

Query: 246 SYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEE-CLTGQNLRGAEFIWGAMV 304
           S LI  L  C+        +  M++RG      FF    +  C  G+ +  +E ++  MV
Sbjct: 446 S-LIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIE-SEKLFELMV 503

Query: 305 GRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKL 364
            RIG +P+   YN +I+ YC + +   AMKLL  MV  G  P+  TY+ L     K  ++
Sbjct: 504 -RIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRM 562

Query: 365 WEASGLFNEM 374
            +A  LF EM
Sbjct: 563 EDALVLFKEM 572



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 77/308 (25%), Positives = 127/308 (41%), Gaps = 15/308 (4%)

Query: 152 KDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDG---RIKPDNDTYA 208
           +DA   FD + + G    ++ LN  L+ + RD       ++ R+       + PD  TY 
Sbjct: 32  EDARHVFDELLRRGRGASIYGLNRALADVARDSPAAAVSRYNRMARAGADEVTPDLCTYG 91

Query: 209 ILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNS---- 264
           IL+    +   +       G  VI+ G+  D +         LLKG      T ++    
Sbjct: 92  ILIGCCCRAGRLDLGFAALGN-VIKKGFRVDAIA-----FTPLLKGLCADKRTSDAMDIV 145

Query: 265 LKRMMERGCNPGMTFFKLAFEE-CLTGQNLRGAEFIWGAMVGRIGFRP-DTHMYNMMISL 322
           L+RM E GC P +  + +  +  C   ++    E +      R G  P D   Y  +I+ 
Sbjct: 146 LRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVING 205

Query: 323 YCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLN 382
           +    ++  A     EM+  G  PD+ TYN +   L K + + +A  + N MVKN  + +
Sbjct: 206 FFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPD 265

Query: 383 HENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAK 442
                + +  Y  S  P  AI F K M  +       T +LL+  LC      EA K   
Sbjct: 266 CMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFD 325

Query: 443 GMAEKGIQ 450
            M ++G++
Sbjct: 326 SMTKRGLK 333



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 82/361 (22%), Positives = 140/361 (38%), Gaps = 40/361 (11%)

Query: 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR 194
           + ++ +V + +        A +T+  M   G   DV   NS+++A+C+      A + L 
Sbjct: 196 VVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLN 255

Query: 195 -VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLK 253
            +V   + PD  TY  +L G+        A     +M  + G +PD V    S L+  L 
Sbjct: 256 TMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSD-GVEPDVVTY--SLLMDYLC 312

Query: 254 GCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDT 313
                 E       M +RG  P +T +    +   T   L     +   MV R G  PD 
Sbjct: 313 KNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMV-RNGIHPDH 371

Query: 314 HMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNE 373
           ++++++I  Y    +   AM +  +M   G  P+  TY  +   L K  ++ +A   F +
Sbjct: 372 YVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQ 431

Query: 374 MVKNE--------NVLNHENCRA-----AVRVYMDSDDPYVAIK--FWKYMIENHCSD-- 416
           M+           N L H  C       A  + ++  D  + +   F+  +I++HC +  
Sbjct: 432 MIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGR 491

Query: 417 ------LSE------------TGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSK 458
                 L E            T N L+ G C    + EA+K   GM   G++      S 
Sbjct: 492 VIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYST 551

Query: 459 L 459
           L
Sbjct: 552 L 552



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 68/328 (20%), Positives = 136/328 (41%), Gaps = 12/328 (3%)

Query: 158 FDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRV-VDGRIKPDNDTYAILLEGWEK 216
            +++++  C + +F  NS++ + C++G+ I++ +   + V   +KP+  TY  L+ G+  
Sbjct: 465 LEMLDRGICLNTIF-FNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCL 523

Query: 217 ERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSL---KRMMERGC 273
              +  A K    MV  VG  P+ V        TL+ G   I    ++L   K M   G 
Sbjct: 524 AGKMDEAMKLLSGMV-SVGLKPNTVTYS-----TLINGYCKISRMEDALVLFKEMESSGV 577

Query: 274 NPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAM 333
           +P +  + +  +     +    A+ ++   +   G + +   YN+++   C +  T  A+
Sbjct: 578 SPDIITYNIILQGLFQTRRTAAAKELY-VRITESGTQIELSTYNIILHGLCKNKLTDDAL 636

Query: 334 KLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVY 393
           ++   +       + +T+NI+ + L+K  +  EA  LF     N  V N+   R      
Sbjct: 637 QMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENI 696

Query: 394 MDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTP 453
           +         + +  M +N C+  S   N +V  L     +  A  Y   + EK   +  
Sbjct: 697 IGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEITRAGTYLSMIDEKHFSLEA 756

Query: 454 FALSKLKQILIKARKEAVYEELLKKCKA 481
              S    +L   + +  Y  L +K K+
Sbjct: 757 STASLFIDLLSGGKYQEYYRFLPEKYKS 784


>gi|125538899|gb|EAY85294.1| hypothetical protein OsI_06665 [Oryza sativa Indica Group]
          Length = 632

 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 100/441 (22%), Positives = 178/441 (40%), Gaps = 57/441 (12%)

Query: 51  SPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVK--FFRWSAYQLNDKHSPYAWNLVV 108
            P  E  L+  ++RV    V +V+K   +  G  VK  FFRW+A + N +H    +  ++
Sbjct: 74  GPDAERALEVLMLRVDHWLVREVMK---TDVGVNVKMQFFRWAAKKRNYQHDTSTYMALI 130

Query: 109 DLLGKNCLFDAMWDAIKSMKKEN--VLSLATFASVFSSYVVADRVKDAITTFDVMEQYGC 166
             L     +  MW  I+ M +    V++    + V      A  +  AIT F  ++   C
Sbjct: 131 HCLELVEQYGEMWKMIQEMVRSPICVVTPMELSQVIRMLGNAKMIGKAITIFYQIKARKC 190

Query: 167 KHDVFALNSLLSAICRDGKTIDAWQFLRVV--DGRIKPDNDTYAILLEGWEKERDVANAK 224
           +    A NS++  +  +G+     +    +  +G  +PD  TY+ L+  + K     +A 
Sbjct: 191 QPTAQAYNSMIIMLIHEGQYEKVHELYNEMSNEGHCQPDTVTYSALISAFCKLGRQDSAI 250

Query: 225 KTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAF 284
           +   EM  E G  P       + +I+L    D ++  ++  + M    C P +      +
Sbjct: 251 RLLNEMK-ENGMQP--TAKIYTMIISLFFKLDNVHGALSLFEEMRYMYCRPDV----FTY 303

Query: 285 EECLTGQNLRG----AEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMV 340
            E + G    G    A   +  M  R G +PDT + N MI+    +      +KL +EM 
Sbjct: 304 TELIRGLGKAGRIDEAYHFYHEM-QREGCKPDTVVMNNMINFLGKAGRLDDGLKLFEEMG 362

Query: 341 YNGAFPDIQTYNILFEFLVKGR-KLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDP 399
            +   P++ TYN + + L + + ++ E    F  M K   +               S  P
Sbjct: 363 VSHCIPNVVTYNTIIKALFESKSRVSEVFSWFERM-KGSGI---------------SPSP 406

Query: 400 YVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKL 459
           +                   T ++L+ G C  + + +A+   + M EKG    P A   L
Sbjct: 407 F-------------------TYSILIDGFCKTNRIEKAMMLLEEMDEKGFPPCPAAYCSL 447

Query: 460 KQILIKARKEAVYEELLKKCK 480
              L KA++  +  EL ++ K
Sbjct: 448 IDALGKAKRYDLACELFQELK 468



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 60/264 (22%), Positives = 111/264 (42%), Gaps = 11/264 (4%)

Query: 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYV-VADRVKDAITTFDV 160
           + +  ++  LGK    D  +     M++E         +   +++  A R+ D +  F+ 
Sbjct: 301 FTYTELIRGLGKAGRIDEAYHFYHEMQREGCKPDTVVMNNMINFLGKAGRLDDGLKLFEE 360

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTID---AWQFLRVVDGRIKPDNDTYAILLEGWEKE 217
           M    C  +V   N+++ A+      +    +W F R+    I P   TY+IL++G+ K 
Sbjct: 361 MGVSHCIPNVVTYNTIIKALFESKSRVSEVFSW-FERMKGSGISPSPFTYSILIDGFCKT 419

Query: 218 RDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGC-NPG 276
             +  A     EM  E G+ P   PA    LI  L G    Y+    L + ++  C +  
Sbjct: 420 NRIEKAMMLLEEMD-EKGFPP--CPAAYCSLIDAL-GKAKRYDLACELFQELKENCGSSS 475

Query: 277 MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLL 336
              + +  +       L  A  ++  M  ++G  P+ + YN ++S    +     A+  +
Sbjct: 476 ARVYAVMIKHLGKAGRLDDAINLFDEM-SKLGCTPNVYAYNALMSGLARACMLDEALTTM 534

Query: 337 DEMVYNGAFPDIQTYNILFEFLVK 360
            +M  +G  PDI +YNI+   L K
Sbjct: 535 RKMQEHGCLPDINSYNIILNGLAK 558



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 51/226 (22%), Positives = 103/226 (45%), Gaps = 7/226 (3%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           T++ +   +   +R++ A+   + M++ G      A  SL+ A+ +  +   A +  + +
Sbjct: 408 TYSILIDGFCKTNRIEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQEL 467

Query: 197 DGRIKPDN-DTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
                  +   YA++++   K   + +A   F EM  ++G  P NV AY++ +  L + C
Sbjct: 468 KENCGSSSARVYAVMIKHLGKAGRLDDAINLFDEMS-KLGCTP-NVYAYNALMSGLARAC 525

Query: 256 DGIYETVNSLKRMMERGCNPGMTFFKLAFEECL-TGQNLRGAEFIWGAMVGRIGFRPDTH 314
             + E + ++++M E GC P +  + +       TG   R  E +       I  +PD  
Sbjct: 526 -MLDEALTTMRKMQEHGCLPDINSYNIILNGLAKTGGPHRAMEMLTNMKNSTI--KPDAV 582

Query: 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVK 360
            YN ++S   ++     A +L+ EM   G   D+ TY+ + E + K
Sbjct: 583 SYNTVLSALSHAGMFEEAAELMKEMNALGFEYDLITYSSILEAIGK 628



 Score = 47.4 bits (111), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 56/273 (20%), Positives = 105/273 (38%), Gaps = 7/273 (2%)

Query: 105 NLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSS-YVVADRVKDAITTFDVME 162
           N +++ LGK    D      + M   + + ++ T+ ++  + +    RV +  + F+ M+
Sbjct: 339 NNMINFLGKAGRLDDGLKLFEEMGVSHCIPNVVTYNTIIKALFESKSRVSEVFSWFERMK 398

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVA 221
             G     F  + L+   C+  +   A   L  +D +   P    Y  L++   K +   
Sbjct: 399 GSGISPSPFTYSILIDGFCKTNRIEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYD 458

Query: 222 NAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFK 281
            A + F E+    G     V A    +I  L     + + +N    M + GC P +  + 
Sbjct: 459 LACELFQELKENCGSSSARVYAV---MIKHLGKAGRLDDAINLFDEMSKLGCTPNVYAYN 515

Query: 282 LAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVY 341
            A    L    +          +   G  PD + YN++++    +     AM++L  M  
Sbjct: 516 -ALMSGLARACMLDEALTTMRKMQEHGCLPDINSYNIILNGLAKTGGPHRAMEMLTNMKN 574

Query: 342 NGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
           +   PD  +YN +   L       EA+ L  EM
Sbjct: 575 STIKPDAVSYNTVLSALSHAGMFEEAAELMKEM 607


>gi|449462477|ref|XP_004148967.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 597

 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 75/322 (23%), Positives = 134/322 (41%), Gaps = 54/322 (16%)

Query: 127 MKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKT 186
           +++  +  + T+ ++     +  R+  A   F  M++ GC  +     +L+  +CR G  
Sbjct: 158 LRRGYIPDIVTYTTLIKGLCMEHRISKAALLFTRMQKLGCTPNAITYGTLMKGLCRTGNI 217

Query: 187 IDAWQFLR-------VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPD 239
             A +  +       +     KP   +Y+I+++   K+R    A+  F EM ++ G  P 
Sbjct: 218 SIALKLHQEMLNDSSLYGINFKPVVISYSIIIDALCKDRREDEARDLFEEMKVQ-GMTP- 275

Query: 240 NVPAYDSY--------------------------LITLLKGCDGIYETVNSLKRMMERGC 273
            V +Y S                           LI +L     + E  + L+ M++RG 
Sbjct: 276 TVISYTSLMWEEAKRLFNEMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGI 335

Query: 274 NPGMTFFKLAFEE-CLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAA 332
            P +  +    E  CL G +L  A  ++ +M  + G  PD   Y ++I+ YC +++   A
Sbjct: 336 VPNLLTYNSLIEGFCLVG-DLNSARELFVSMPSK-GCEPDVICYTVLINGYCKTSKVEEA 393

Query: 333 MKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRV 392
           MKL + M+  G  PD++TY  L   L +G K+ +A  LF  M                +V
Sbjct: 394 MKLYNGMLQVGKRPDVKTYGALLTGLFQGGKVGDAKKLFGVM----------------KV 437

Query: 393 YMDSDDPYVAIKFWKYMIENHC 414
           Y    D Y+   F   + +N C
Sbjct: 438 YGIPGDLYIYGIFLNGLCKNGC 459



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 72/305 (23%), Positives = 126/305 (41%), Gaps = 16/305 (5%)

Query: 120 MWDAIKSMKKENV-----LSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALN 174
           MW+  K +  E V      ++ TF  +        +V +A    +VM Q G   ++   N
Sbjct: 284 MWEEAKRLFNEMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYN 343

Query: 175 SLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIE 233
           SL+   C  G    A + F+ +     +PD   Y +L+ G+ K   V  A K +  M ++
Sbjct: 344 SLIEGFCLVGDLNSARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGM-LQ 402

Query: 234 VGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNL 293
           VG  PD V  Y + L  L +G  G       L  +M+    PG  +    F   L G   
Sbjct: 403 VGKRPD-VKTYGALLTGLFQG--GKVGDAKKLFGVMKVYGIPGDLYIYGIF---LNGLCK 456

Query: 294 RGAEFIWGAMVGRI---GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQT 350
            G  F    +  ++     + D   +N +I   C + +   A +L +++      PD+ T
Sbjct: 457 NGCLFEAMELFNKLKSYNIKLDIECFNCLIDGLCKAGKLETAWELFEKLPQEELQPDVVT 516

Query: 351 YNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMI 410
           YNI+     +G ++ +A+ LF +M KN    +       +R + +S      ++    M+
Sbjct: 517 YNIMIHEFCRGGQVVKANILFQKMEKNGCTPDKITYATLIRGFFESKKLEKVVELLHMMV 576

Query: 411 ENHCS 415
           +   S
Sbjct: 577 QRDVS 581



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 76/346 (21%), Positives = 123/346 (35%), Gaps = 69/346 (19%)

Query: 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR 194
           L++F  + S              ++ M   G   D   LN LL+ +C   +  +    L 
Sbjct: 96  LSSFTHLLSGLAKIKHYSQVFYLYNQMRLSGISPDCCTLNILLNCLCNVNRVGEG---LA 152

Query: 195 VVDGRIK----PDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLIT 250
           V+ G ++    PD  TY  L++G   E  ++ A   F  M  ++G  P+ +  Y     T
Sbjct: 153 VMAGILRRGYIPDIVTYTTLIKGLCMEHRISKAALLFTRMQ-KLGCTPNAI-TYG----T 206

Query: 251 LLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAF-EECLTGQNLRGAEFIWGAMVGRIGF 309
           L+KG                  C  G     L   +E L   +L G           I F
Sbjct: 207 LMKGL-----------------CRTGNISIALKLHQEMLNDSSLYG-----------INF 238

Query: 310 RPDTHMYNMMISLYCYSNETGAAM---------------------------KLLDEMVYN 342
           +P    Y+++I   C       A                            +L +EMV  
Sbjct: 239 KPVVISYSIIIDALCKDRREDEARDLFEEMKVQGMTPTVISYTSLMWEEAKRLFNEMVNQ 298

Query: 343 GAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVA 402
           G  P++ T+N+L + L K  K+ EA  L   M++   V N     + +  +    D   A
Sbjct: 299 GVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSA 358

Query: 403 IKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448
            + +  M    C        +L+ G C    + EA+K   GM + G
Sbjct: 359 RELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVG 404


>gi|297809453|ref|XP_002872610.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318447|gb|EFH48869.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 575

 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 71/277 (25%), Positives = 122/277 (44%), Gaps = 8/277 (2%)

Query: 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASVFSSYVVADRVKDAITTFDV 160
           Y +N V++ L K+      +     M++  V  ++ T+ ++        +  +A    D 
Sbjct: 269 YTYNCVMNQLCKDGRTKDAFKVFDEMRERGVSCNIVTYNTLIGGLCREMKANEANKVMDQ 328

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERD 219
           M+ Y    ++   N+L+   C  GK   A    R +  R + P   TY +L+ G+ ++ D
Sbjct: 329 MKSYVINPNLITYNTLIDGFCSVGKLGKALSLCRDLKSRGLSPSLVTYNVLVSGFCRKGD 388

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGM-T 278
            + A K   EM  E G  P  V    + LI      D +   +     M E G  P + T
Sbjct: 389 TSGAAKMVKEME-ERGIKPSKVTY--TILIDTFARSDNMETAIQLRSSMEELGLVPDVHT 445

Query: 279 FFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDE 338
           +  L    C+ GQ +  A  ++ +MV ++   P+  +YN MI  YC    +  A++L  +
Sbjct: 446 YSVLIHGFCIKGQ-MNEASRLFKSMVEKM-LEPNEVIYNTMILGYCKEGSSYRALRLFRD 503

Query: 339 MVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
           M      P++ +Y+ L   L K RKL EA  L  +M+
Sbjct: 504 MEEKELAPNVASYSYLIRVLCKERKLKEAEDLVEKMI 540



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 71/300 (23%), Positives = 134/300 (44%), Gaps = 7/300 (2%)

Query: 152 KDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAIL 210
           K     ++ M+++G   +++  N +++ +C+DG+T DA++    +  R +  +  TY  L
Sbjct: 250 KQGFEMYEKMQEHGVFPNLYTYNCVMNQLCKDGRTKDAFKVFDEMRERGVSCNIVTYNTL 309

Query: 211 LEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMME 270
           + G  +E     A K   +M   V  +P N+  Y++ LI        + + ++  + +  
Sbjct: 310 IGGLCREMKANEANKVMDQMKSYV-INP-NLITYNT-LIDGFCSVGKLGKALSLCRDLKS 366

Query: 271 RGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETG 330
           RG +P +  + +         +  GA  +   M  R G +P    Y ++I  +  S+   
Sbjct: 367 RGLSPSLVTYNVLVSGFCRKGDTSGAAKMVKEMEER-GIKPSKVTYTILIDTFARSDNME 425

Query: 331 AAMKLLDEMVYNGAFPDIQTYNILFE-FLVKGRKLWEASGLFNEMVKNENVLNHENCRAA 389
            A++L   M   G  PD+ TY++L   F +KG+ + EAS LF  MV+     N       
Sbjct: 426 TAIQLRSSMEELGLVPDVHTYSVLIHGFCIKGQ-MNEASRLFKSMVEKMLEPNEVIYNTM 484

Query: 390 VRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
           +  Y      Y A++ ++ M E   +    + + L+  LC    L EA    + M + GI
Sbjct: 485 ILGYCKEGSSYRALRLFRDMEEKELAPNVASYSYLIRVLCKERKLKEAEDLVEKMIDSGI 544



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 78/330 (23%), Positives = 135/330 (40%), Gaps = 38/330 (11%)

Query: 138 FASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVD 197
           +  + ++YV +  +  +I  F+ M   G        N+LL+ +         W F     
Sbjct: 97  YEVIINAYVQSQSLDSSIYYFNEMVDKGFVPGSNCFNNLLTFVVGSSSFNQWWCFFNESK 156

Query: 198 GRIKPDNDTYAILLEGWEKERDVANAKKTFGEMV--IEVGWDPDNVPAYDSYLITLLKGC 255
            ++  D  ++ I+++G  +  ++   +K+F  +V   E G+ P NV  Y     TL+ GC
Sbjct: 157 IKVVLDVYSFGIVIKGCCEAGEI---EKSFDLLVELREFGFSP-NVVIY----TTLIDGC 208

Query: 256 DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTG---QNLRGAEFIWGAMVGRIGFRPD 312
               E   +     E G   G+   +  +   + G     ++   F     +   G  P+
Sbjct: 209 CKKGEIEKAKDLFFEMG-KFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPN 267

Query: 313 THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFN 372
            + YN +++  C    T  A K+ DEM   G   +I TYN L   L +  K  EA+ + +
Sbjct: 268 LYTYNCVMNQLCKDGRTKDAFKVFDEMRERGVSCNIVTYNTLIGGLCREMKANEANKVMD 327

Query: 373 EM---VKNENVLNHENCRAAVRVYMDSDDPYVAI-KFWKYMIENHCSDLSETG------- 421
           +M   V N N++           Y    D + ++ K  K +  + C DL   G       
Sbjct: 328 QMKSYVINPNLI----------TYNTLIDGFCSVGKLGKAL--SLCRDLKSRGLSPSLVT 375

Query: 422 -NLLVAGLCDMHMLPEAVKYAKGMAEKGIQ 450
            N+LV+G C       A K  K M E+GI+
Sbjct: 376 YNVLVSGFCRKGDTSGAAKMVKEMEERGIK 405


>gi|302754000|ref|XP_002960424.1| hypothetical protein SELMODRAFT_74408 [Selaginella moellendorffii]
 gi|300171363|gb|EFJ37963.1| hypothetical protein SELMODRAFT_74408 [Selaginella moellendorffii]
          Length = 321

 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 68/283 (24%), Positives = 119/283 (42%), Gaps = 38/283 (13%)

Query: 128 KKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTI 187
           +K  + ++ TF  +      A+R+ DA    +VM + GC  +    N ++ A+C++G++ 
Sbjct: 3   EKGCIPTVVTFGILVDGLCKANRLTDAFELVEVMAERGCFPNALVFNGIMDALCKEGRSA 62

Query: 188 DAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDS 246
           +A+ ++  +    + P   TY IL++G+ KE  +  A +   EM    G +P++V  Y++
Sbjct: 63  EAYGYIETMRSMGVSPTIVTYNILIDGFCKEEKLHRALEILQEMTGR-GHEPNHV-TYNT 120

Query: 247 YL-------------------------------ITLLKG-CDG--IYETVNSLKRMMERG 272
           +L                                TL+ G C    + E  + L  M   G
Sbjct: 121 FLHGLCKYGKVDDALALFRAMTEKKIRLDVYGYTTLIDGLCQAGKLAEAYSLLDEMENSG 180

Query: 273 CNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAA 332
           C P    +         G  +  A  ++  M G  G  PD   + MM+  YC  +    A
Sbjct: 181 CVPKPGCYNAILSWLCKGSRINEAHKLFKRMTGS-GILPDWLTFGMMVFGYCRGHRIDDA 239

Query: 333 MKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
           + LL +M   G  P    YN L + L +  ++ EA  L  EM+
Sbjct: 240 LLLLQQMKSAGLAPREVIYNTLIDALNRAGRVSEAYRLLQEMI 282



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 63/257 (24%), Positives = 108/257 (42%), Gaps = 14/257 (5%)

Query: 104 WNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVME 162
           +N ++D L K       +  I++M+   V  ++ T+  +   +   +++  A+     M 
Sbjct: 48  FNGIMDALCKEGRSAEAYGYIETMRSMGVSPTIVTYNILIDGFCKEEKLHRALEILQEMT 107

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYAILLEGWEKERDVA 221
             G + +    N+ L  +C+ GK  DA    R + + +I+ D   Y  L++G  +   +A
Sbjct: 108 GRGHEPNHVTYNTFLHGLCKYGKVDDALALFRAMTEKKIRLDVYGYTTLIDGLCQAGKLA 167

Query: 222 NAKKTFGEMVIEVGWDPDNVP---AYDSYLITLLKGCDGIYETVNSLKRMMERGCNPG-M 277
            A     EM      +   VP    Y++ L  L KG   I E     KRM   G  P  +
Sbjct: 168 EAYSLLDEM-----ENSGCVPKPGCYNAILSWLCKG-SRINEAHKLFKRMTGSGILPDWL 221

Query: 278 TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLD 337
           TF  + F  C  G  +  A  +   M    G  P   +YN +I     +     A +LL 
Sbjct: 222 TFGMMVFGYC-RGHRIDDALLLLQQMKS-AGLAPREVIYNTLIDALNRAGRVSEAYRLLQ 279

Query: 338 EMVYNGAFPDIQTYNIL 354
           EM+  G  P+ +TY ++
Sbjct: 280 EMISRGLSPNSRTYALM 296



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 72/183 (39%), Gaps = 3/183 (1%)

Query: 268 MMERGCNPGMTFFKLAFEE-CLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYS 326
           M ERGC P    F    +  C  G++     +I    +  +G  P    YN++I  +C  
Sbjct: 36  MAERGCFPNALVFNGIMDALCKEGRSAEAYGYI--ETMRSMGVSPTIVTYNILIDGFCKE 93

Query: 327 NETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENC 386
            +   A+++L EM   G  P+  TYN     L K  K+ +A  LF  M + +  L+    
Sbjct: 94  EKLHRALEILQEMTGRGHEPNHVTYNTFLHGLCKYGKVDDALALFRAMTEKKIRLDVYGY 153

Query: 387 RAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAE 446
              +     +     A      M  + C       N +++ LC    + EA K  K M  
Sbjct: 154 TTLIDGLCQAGKLAEAYSLLDEMENSGCVPKPGCYNAILSWLCKGSRINEAHKLFKRMTG 213

Query: 447 KGI 449
            GI
Sbjct: 214 SGI 216


>gi|218197600|gb|EEC80027.1| hypothetical protein OsI_21710 [Oryza sativa Indica Group]
          Length = 694

 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 85/341 (24%), Positives = 149/341 (43%), Gaps = 11/341 (3%)

Query: 124 IKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICR 182
           + SM +  V  ++ T+  +  +     R+++A+     M   GC  +    N+L++A CR
Sbjct: 140 LSSMLRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCR 199

Query: 183 DGKTIDAWQFLRVV--DGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDN 240
            G+   A + + ++  +G  KP+  T+  ++ G  K   +  A+K F EMV E G  PD 
Sbjct: 200 AGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVRE-GLAPD- 257

Query: 241 VPAYDSYLITLLK-GCDGIYETVNSLKRMMERGCNPG-MTFFKLAFEECLTGQNLRGAEF 298
           V +Y++ L    K GC  ++E++     M +RG  P  +TF  L    C  G NL  A  
Sbjct: 258 VVSYNTLLSGYCKVGC--LHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAG-NLEQAVA 314

Query: 299 IWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFL 358
           +   M  R G R +   +  +I  +C       A+  ++EM   G  P +  YN L    
Sbjct: 315 LVAQMRER-GLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGY 373

Query: 359 VKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLS 418
            K  ++  A  L  EM       +       +  Y    +   A +  + M++      +
Sbjct: 374 CKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDA 433

Query: 419 ETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKL 459
            T + L+ GLC+   L +A +  + M + G+Q   F  + L
Sbjct: 434 ITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTL 474



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 57/238 (23%), Positives = 100/238 (42%), Gaps = 44/238 (18%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           TF ++   +     + DA+   + M + G +  V   N+L++  C+ G+   A + +R +
Sbjct: 330 TFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREM 389

Query: 197 DG-RIKPDNDTYAILLEGWEKERDVANAKKTF--GEMVIEVGWDPDNVPAYDSYLITLLK 253
           +  R+KPD  TY+ ++ G+ K   V N    F   + +++ G  PD +            
Sbjct: 390 EAKRVKPDVVTYSTIISGYCK---VGNLDSAFQLNQKMLKKGVLPDAI------------ 434

Query: 254 GCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDT 313
                  T +SL R        G+   K   + C   +N+            ++G +PD 
Sbjct: 435 -------TYSSLIR--------GLCEEKRLNDACELFENML-----------QLGVQPDE 468

Query: 314 HMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLF 371
             Y  +I  +C       A+ L DEM+  G  PD+ TY++L   L K  +  EA  L 
Sbjct: 469 FTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLL 526



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 64/260 (24%), Positives = 108/260 (41%), Gaps = 4/260 (1%)

Query: 223 AKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNP-GMTFFK 281
           + + F   ++  G  P NV  Y+  L+  L     + E V  +  M   GC P  +T+  
Sbjct: 135 SARRFLSSMLRHGVAP-NVYTYN-ILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNT 192

Query: 282 LAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVY 341
           L    C  G+ L GAE +   M      +P+   +N M++  C +     A K+ DEMV 
Sbjct: 193 LVAAFCRAGE-LDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVR 251

Query: 342 NGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYV 401
            G  PD+ +YN L     K   L E+  +F+EM +   V +     + +     + +   
Sbjct: 252 EGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQ 311

Query: 402 AIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQ 461
           A+     M E        T   L+ G C    L +A+   + M + GIQ +    + L  
Sbjct: 312 AVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALIN 371

Query: 462 ILIKARKEAVYEELLKKCKA 481
              K  +  +  EL+++ +A
Sbjct: 372 GYCKLGRMDLARELIREMEA 391



 Score = 38.1 bits (87), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 60/150 (40%), Gaps = 16/150 (10%)

Query: 308 GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEA 367
           G+ P    YN ++ L        +A + L  M+ +G  P++ TYNIL   L    +L EA
Sbjct: 113 GYAPSVPAYNAVL-LALSDASLPSARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEEA 171

Query: 368 SGLFNEM--------VKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSE 419
            G+  +M            N L    CRA     +D  +  V++       E +      
Sbjct: 172 VGVVGDMRGAGCAPNAVTYNTLVAAFCRAG---ELDGAERVVSLMRE----EGNAKPNLV 224

Query: 420 TGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
           T N +V GLC    +  A K    M  +G+
Sbjct: 225 TFNSMVNGLCKAGRMEGARKVFDEMVREGL 254


>gi|359474768|ref|XP_002270963.2| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic [Vitis vinifera]
          Length = 1022

 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 89/382 (23%), Positives = 166/382 (43%), Gaps = 14/382 (3%)

Query: 106 LVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYG 165
           L+  L+  N L  + W   ++M++     +  F++  +++    +V+DAI  F  ME+ G
Sbjct: 285 LLSSLVKANELEKSYW-VFETMRQGVSPDVYLFSTAINAFCKGGKVEDAIQLFFDMEKLG 343

Query: 166 CKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERDVANAK 224
              +V   N+L+  +C+ G   +A++F  ++V   +     TY++L+ G  K      A 
Sbjct: 344 VSPNVVTYNNLIHGLCKHGNLDEAFRFKEKMVKDGVNATLITYSVLINGLMKLEKFNEAN 403

Query: 225 KTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLK---RMMERGCNP-GMTFF 280
               E  +E G+ P+ V  Y+    TL+ G   +    ++L+    M+ +G NP  +T  
Sbjct: 404 SVLKE-TLEKGFTPNEV-VYN----TLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLN 457

Query: 281 KLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMV 340
            +    C  GQ +  AE I   M+ R GF  +   +  +I   C ++   +A++ L EM+
Sbjct: 458 SIIQGFCKIGQ-MEQAECILEEMLSR-GFSINPGAFTTIIHWLCMNSRFESALRFLREML 515

Query: 341 YNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPY 400
                P+      L   L K  K  +A  L+  +++     N     A +     + +  
Sbjct: 516 LRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQ 575

Query: 401 VAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLK 460
            A++  K M+E        T N L++G C    + E  K    M ++GI+   F  + L 
Sbjct: 576 EAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLI 635

Query: 461 QILIKARKEAVYEELLKKCKAH 482
             + +  K      L  +CK+ 
Sbjct: 636 HGMCRIGKLDEAVNLWNECKSR 657



 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 74/316 (23%), Positives = 139/316 (43%), Gaps = 7/316 (2%)

Query: 136 ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRV 195
            T  S+   +    +++ A    + M   G   +  A  +++  +C + +   A +FLR 
Sbjct: 454 VTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLRE 513

Query: 196 VDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG 254
           +  R ++P++     L+ G  KE   ++A + +  + +E G+  + V    + LI  L  
Sbjct: 514 MLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRL-LEKGFGANLVTT--NALIHGLCK 570

Query: 255 CDGIYETVNSLKRMMERG-CNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDT 313
              + E V  LK+M+ERG     +T+  L    C  G+   G + + G MV + G  PDT
Sbjct: 571 TGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFK-LRGEMVKQ-GIEPDT 628

Query: 314 HMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNE 373
             YN++I   C   +   A+ L +E       P++ TY ++ +   K  K+ E   LF E
Sbjct: 629 FTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTE 688

Query: 374 MVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHM 433
           ++     LN       +R Y  + +   A K    M        + T + L+ G+C++  
Sbjct: 689 LLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGR 748

Query: 434 LPEAVKYAKGMAEKGI 449
           + +A      M ++G+
Sbjct: 749 MEDAKCLIDEMRKEGL 764



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 88/382 (23%), Positives = 149/382 (39%), Gaps = 83/382 (21%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-F 192
           ++ T   + SS V A+ ++ +   F+ M Q G   DV+  ++ ++A C+ GK  DA Q F
Sbjct: 278 TVKTCTFLLSSLVKANELEKSYWVFETMRQ-GVSPDVYLFSTAINAFCKGGKVEDAIQLF 336

Query: 193 LRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
             +    + P+  TY  L+ G  K  ++  A + F E +++ G +   +    S LI  L
Sbjct: 337 FDMEKLGVSPNVVTYNNLIHGLCKHGNLDEAFR-FKEKMVKDGVNATLITY--SVLINGL 393

Query: 253 KGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD 312
              +   E  + LK  +E+G                                    F P+
Sbjct: 394 MKLEKFNEANSVLKETLEKG------------------------------------FTPN 417

Query: 313 THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFN 372
             +YN +I  YC     G A+++  +MV  G  P+  T N + +   K  ++ +A  +  
Sbjct: 418 EVVYNTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECILE 477

Query: 373 EMVKNENVLN--------HENC-----RAAVRVY-------MDSDDPYV----------- 401
           EM+     +N        H  C      +A+R         M  +D  +           
Sbjct: 478 EMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRNMRPNDGLLTTLVGGLCKEG 537

Query: 402 ----AIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALS 457
               A++ W  ++E        T N L+ GLC    + EAV+  K M E+G     F L 
Sbjct: 538 KHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERG-----FVLD 592

Query: 458 KL--KQILIKARKEAVYEELLK 477
           K+    ++    KE   EE  K
Sbjct: 593 KITYNTLISGCCKEGKVEEGFK 614



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 84/331 (25%), Positives = 129/331 (38%), Gaps = 17/331 (5%)

Query: 136 ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRV 195
             + ++   Y     + DA+     M   G   +   LNS++   C+ G+   A   L  
Sbjct: 419 VVYNTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEE 478

Query: 196 VDGR---IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
           +  R   I P    +  ++          +A +   EM++       N+   D  L TL+
Sbjct: 479 MLSRGFSINPG--AFTTIIHWLCMNSRFESALRFLREMLLR------NMRPNDGLLTTLV 530

Query: 253 KGC--DGIY-ETVNSLKRMMERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIG 308
            G   +G + + V    R++E+G    + T   L    C TG N++ A  +   M+ R G
Sbjct: 531 GGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTG-NMQEAVRLLKKMLER-G 588

Query: 309 FRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEAS 368
           F  D   YN +IS  C   +     KL  EMV  G  PD  TYN+L   + +  KL EA 
Sbjct: 589 FVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAV 648

Query: 369 GLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGL 428
            L+NE    + V N       +  Y  +D      K +  ++  +    S   N L+   
Sbjct: 649 NLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAY 708

Query: 429 CDMHMLPEAVKYAKGMAEKGIQVTPFALSKL 459
           C      EA K    M  KGI  T    S L
Sbjct: 709 CRNGNTVEAFKLHDDMRSKGIPPTTATYSSL 739



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 80/333 (24%), Positives = 135/333 (40%), Gaps = 46/333 (13%)

Query: 102 YAWNLVVD--LLGKNCLFDAMWDAIKSMKK----ENVLSLATFASVFSSYVVADRVKDAI 155
           +  NLV    L+   C    M +A++ +KK      VL   T+ ++ S      +V++  
Sbjct: 554 FGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGF 613

Query: 156 TTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGW 214
                M + G + D F  N L+  +CR GK  +A         R + P+  TY ++++G+
Sbjct: 614 KLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGY 673

Query: 215 EKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD--------------GIYE 260
            K   +   +K F E++ +   + ++V  Y++ +    +  +              GI  
Sbjct: 674 CKADKIEEGEKLFTELLTQ-NLELNSV-VYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPP 731

Query: 261 TVNSLKRMMERGCNPG-MTFFKLAFEECLTGQNLRGAEFIWGAMVG---RIG-------- 308
           T  +   ++   CN G M   K   +E +  + L      + A++G   ++G        
Sbjct: 732 TTATYSSLIHGMCNIGRMEDAKCLIDE-MRKEGLLPNVVCYTALIGGYCKLGQMDKVVNV 790

Query: 309 --------FRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVK 360
                     P+   Y +MI  Y  S +   A KLL EMV  G  PD  TYN+L     K
Sbjct: 791 LQEMSSYDIHPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGIVPDTVTYNVLTNGFCK 850

Query: 361 GRKLWEASGLFNEMVKNEN--VLNHENCRAAVR 391
             K+ E   L  + V   +   L HE  RA  R
Sbjct: 851 EGKIEEGKLLAEDGVGFNSPLFLIHEAFRACTR 883



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/226 (22%), Positives = 88/226 (38%), Gaps = 6/226 (2%)

Query: 257 GIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMY 316
           G    +   + +  +G  P +          +    L  + +++  M  R G  PD +++
Sbjct: 259 GFRNAIGVFRFLANKGVFPTVKTCTFLLSSLVKANELEKSYWVFETM--RQGVSPDVYLF 316

Query: 317 NMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK 376
           +  I+ +C   +   A++L  +M   G  P++ TYN L   L K   L EA     +MVK
Sbjct: 317 STAINAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEAFRFKEKMVK 376

Query: 377 NENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPE 436
           +            +   M  +    A    K  +E   +      N L+ G C M  L +
Sbjct: 377 DGVNATLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGD 436

Query: 437 AVKYAKGMAEKGIQVTPFALSKLKQILIK----ARKEAVYEELLKK 478
           A++    M  KGI      L+ + Q   K     + E + EE+L +
Sbjct: 437 ALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSR 482


>gi|108862162|gb|ABA95747.2| Cytochrome P450 family protein [Oryza sativa Japonica Group]
          Length = 1595

 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 87/356 (24%), Positives = 144/356 (40%), Gaps = 28/356 (7%)

Query: 124  IKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRD 183
            ++ M + +   + TF ++    VVA +V +A+   + M +     DV   N L+S +C+ 
Sbjct: 1177 VEMMGRGHTPDVVTFGALIHGLVVAGKVSEALIVREKMTERQVFPDVNIYNVLISGLCKK 1236

Query: 184  GKTIDAWQFLR-VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVP 242
                 A   L  +++  ++PD   YA L++G+ +  ++ +A+K F E +   G  PD V 
Sbjct: 1237 RMLPAAKNILEEMLEKNVQPDEFVYATLIDGFIRSENLGDARKIF-EFMEHKGVCPDIVS 1295

Query: 243  AYDSYLITLLKG-CD--GIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFI 299
                    ++KG C    + E +  +  M + GC P    +           NL GA   
Sbjct: 1296 CN-----AMIKGYCQFGMMSEAILCMSNMRKVGCIPDEFTYTTVISGYAKQGNLNGALRW 1350

Query: 300  WGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLV 359
               M+ R   +P+   Y+ +I+ YC + +T +A  L   M      P++ TY IL   L 
Sbjct: 1351 LCDMIKR-KCKPNVVTYSSLINGYCKTGDTDSAEGLFANMQAEALSPNVVTYTILIGSLF 1409

Query: 360  KGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDL-- 417
            K  K+  A   F  M+ N    N       V   + S  P V         E H  D   
Sbjct: 1410 KKDKVLRAGLYFETMLLNHCSPNDVTLHYLVN-GLTSCTPCVINSICCNTSEVHGKDALL 1468

Query: 418  --------------SETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKL 459
                          +   N ++  LC  +ML EA+ +   MA+KG    P     L
Sbjct: 1469 VVFKKLVFDIGDPRNSAYNAIIFSLCRHNMLREALDFKNRMAKKGYVPNPITFLSL 1524



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 82/319 (25%), Positives = 125/319 (39%), Gaps = 42/319 (13%)

Query: 150  RVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYA 208
            RV++ +   +     GC   V   N L+   CR G        L  ++     P   TY 
Sbjct: 993  RVEEGLKLIEARWGAGCIPHVVFYNVLIDGYCRRGDMGRGLLLLGEMETNGFLPTLVTYG 1052

Query: 209  ILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRM 268
             L+    K+ D+      F EM  + G+ P NV  Y+S +I  L  C    + +  LK+M
Sbjct: 1053 SLINWLGKKGDLEKIGSLFLEMR-KRGFSP-NVQIYNS-VIDALCNCRSATQAMVILKQM 1109

Query: 269  MERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSN 327
               GC+P + TF  L    C  G   +   F+  A+  R    P+   Y  +I  +C   
Sbjct: 1110 FASGCDPDIITFNTLITGLCHEGHVRKAEHFLREAI--RRELNPNQLSYTPLIHGFCMRG 1167

Query: 328  ETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCR 387
            E   A  LL EM+  G  PD+ T+  L   LV   K+ EA  +  +M + +   +     
Sbjct: 1168 ELMVASDLLVEMMGRGHTPDVVTFGALIHGLVVAGKVSEALIVREKMTERQVFPD----- 1222

Query: 388  AAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEK 447
              V +Y                            N+L++GLC   MLP A    + M EK
Sbjct: 1223 --VNIY----------------------------NVLISGLCKKRMLPAAKNILEEMLEK 1252

Query: 448  GIQVTPFALSKLKQILIKA 466
             +Q   F  + L    I++
Sbjct: 1253 NVQPDEFVYATLIDGFIRS 1271



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 60/292 (20%), Positives = 108/292 (36%), Gaps = 41/292 (14%)

Query: 104  WNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVME 162
            +  +++ LGK    + +      M+K     ++  + SV  +         A+     M 
Sbjct: 1051 YGSLINWLGKKGDLEKIGSLFLEMRKRGFSPNVQIYNSVIDALCNCRSATQAMVILKQMF 1110

Query: 163  QYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYAILLEGWEKERDVA 221
              GC  D+   N+L++ +C +G    A  FLR  +   + P+  +Y  L+ G+       
Sbjct: 1111 ASGCDPDIITFNTLITGLCHEGHVRKAEHFLREAIRRELNPNQLSYTPLIHGFCMR---- 1166

Query: 222  NAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFK 281
                  GE+++                              + L  MM RG  P +  F 
Sbjct: 1167 ------GELMV----------------------------ASDLLVEMMGRGHTPDVVTFG 1192

Query: 282  LAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVY 341
                  +    +  A  +   M  R  F PD ++YN++IS  C      AA  +L+EM+ 
Sbjct: 1193 ALIHGLVVAGKVSEALIVREKMTERQVF-PDVNIYNVLISGLCKKRMLPAAKNILEEMLE 1251

Query: 342  NGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVY 393
                PD   Y  L +  ++   L +A  +F  M       +  +C A ++ Y
Sbjct: 1252 KNVQPDEFVYATLIDGFIRSENLGDARKIFEFMEHKGVCPDIVSCNAMIKGY 1303


>gi|6633861|gb|AAF19720.1|AC008047_27 F2K11.2 [Arabidopsis thaliana]
          Length = 332

 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 67/249 (26%), Positives = 115/249 (46%), Gaps = 15/249 (6%)

Query: 139 ASVFSSYVVADRV-KD-----AITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQF 192
           A V  S  + DR+ KD     A   F  M + G   +V   N ++ + C  G+  DA Q 
Sbjct: 53  ADVVISTAIVDRLCKDGNHINAQNLFTEMHEKGIFPNVLTYNCMIDSFCHSGRWSDADQL 112

Query: 193 LR-VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWD--PDNVPAYDSYLI 249
           LR +++ +I PD  T++ L+  + KER V+ A++ + EM+    W   P  +  Y+S + 
Sbjct: 113 LRHMIEKQINPDIVTFSALINAFVKERKVSEAEEIYKEML---RWSIFPTTI-TYNSMID 168

Query: 250 TLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGF 309
              K  D + +    L  M  +GC+P +  F          + +     I+  M  R G 
Sbjct: 169 GFCKQ-DRVDDAKRMLDSMASKGCSPDVVTFSTLINGYCKAKRVDNGMEIFCEM-HRRGI 226

Query: 310 RPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASG 369
             +T  Y  +I  +C   +  AA  LL+EM+  G  PD  T++ +   L   ++L +A  
Sbjct: 227 VANTVTYTTLIHGFCQVGDLDAAQDLLNEMISCGVAPDYITFHCMLAGLCSKKELRKAFA 286

Query: 370 LFNEMVKNE 378
           +  ++ K+E
Sbjct: 287 ILEDLQKSE 295



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 73/289 (25%), Positives = 126/289 (43%), Gaps = 17/289 (5%)

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVD----------GRIKPDNDTYAI 209
           M + GC+ +V   N+L++++CR+G+ ++A   + R+V+            IK D      
Sbjct: 1   MVETGCRPNVVTFNTLMNSLCREGRVLEALALVDRMVEEGHQPNAMGQSHIKADVVISTA 60

Query: 210 LLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKR-M 268
           +++   K+ +  NA+  F EM  E G  P NV  Y+  + +      G +   + L R M
Sbjct: 61  IVDRLCKDGNHINAQNLFTEMH-EKGIFP-NVLTYNCMIDSFCHS--GRWSDADQLLRHM 116

Query: 269 MERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNE 328
           +E+  NP +  F       +  + +  AE I+  M+ R    P T  YN MI  +C  + 
Sbjct: 117 IEKQINPDIVTFSALINAFVKERKVSEAEEIYKEML-RWSIFPTTITYNSMIDGFCKQDR 175

Query: 329 TGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRA 388
              A ++LD M   G  PD+ T++ L     K +++     +F EM +   V N      
Sbjct: 176 VDDAKRMLDSMASKGCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANTVTYTT 235

Query: 389 AVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEA 437
            +  +    D   A      MI    +    T + ++AGLC    L +A
Sbjct: 236 LIHGFCQVGDLDAAQDLLNEMISCGVAPDYITFHCMLAGLCSKKELRKA 284



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 56/231 (24%), Positives = 99/231 (42%), Gaps = 17/231 (7%)

Query: 231 VIEVGWDPDNVPAYDSYLITLLKGCDG-IYETVNSLKRMMERGCNP---GMTFFK----- 281
           ++E G  P NV  +++ + +L +  +G + E +  + RM+E G  P   G +  K     
Sbjct: 1   MVETGCRP-NVVTFNTLMNSLCR--EGRVLEALALVDRMVEEGHQPNAMGQSHIKADVVI 57

Query: 282 ---LAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDE 338
              +    C  G ++  A+ ++  M  + G  P+   YN MI  +C+S     A +LL  
Sbjct: 58  STAIVDRLCKDGNHI-NAQNLFTEMHEK-GIFPNVLTYNCMIDSFCHSGRWSDADQLLRH 115

Query: 339 MVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDD 398
           M+     PDI T++ L    VK RK+ EA  ++ EM++           + +  +   D 
Sbjct: 116 MIEKQINPDIVTFSALINAFVKERKVSEAEEIYKEMLRWSIFPTTITYNSMIDGFCKQDR 175

Query: 399 PYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
              A +    M    CS    T + L+ G C    +   ++    M  +GI
Sbjct: 176 VDDAKRMLDSMASKGCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGI 226



 Score = 45.4 bits (106), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 2/106 (1%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           T+ S+   +   DRV DA    D M   GC  DV   ++L++  C+  +  +  +    +
Sbjct: 162 TYNSMIDGFCKQDRVDDAKRMLDSMASKGCSPDVVTFSTLINGYCKAKRVDNGMEIFCEM 221

Query: 197 DGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNV 241
             R I  +  TY  L+ G+ +  D+  A+    EM I  G  PD +
Sbjct: 222 HRRGIVANTVTYTTLIHGFCQVGDLDAAQDLLNEM-ISCGVAPDYI 266



 Score = 40.8 bits (94), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 28/133 (21%), Positives = 61/133 (45%), Gaps = 11/133 (8%)

Query: 109 DLLGKNCLFDAMWDAIKSMKKENVL----------SLATFASVFSSYVVADRVKDAITTF 158
           ++L  NC+ D+   + +    + +L           + TF+++ +++V   +V +A   +
Sbjct: 89  NVLTYNCMIDSFCHSGRWSDADQLLRHMIEKQINPDIVTFSALINAFVKERKVSEAEEIY 148

Query: 159 DVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKE 217
             M ++         NS++   C+  +  DA + L  +  +   PD  T++ L+ G+ K 
Sbjct: 149 KEMLRWSIFPTTITYNSMIDGFCKQDRVDDAKRMLDSMASKGCSPDVVTFSTLINGYCKA 208

Query: 218 RDVANAKKTFGEM 230
           + V N  + F EM
Sbjct: 209 KRVDNGMEIFCEM 221


>gi|449508997|ref|XP_004163464.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Cucumis sativus]
          Length = 732

 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 79/333 (23%), Positives = 130/333 (39%), Gaps = 8/333 (2%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           TF  V       +++ DA    D M   G   D      LL  +CR GK  +A + L  +
Sbjct: 290 TFNDVIHGLCKVNKIHDATKLVDRMLLRGFYPDNMTYGFLLHGLCRIGKLNEARKILIKI 349

Query: 197 DGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD 256
                P+N     L+ G+     +  A+    E +I  G+ PD +  Y+  +  L K  +
Sbjct: 350 PC---PNNAILNTLINGYVMSGQLKEAQSFLNETMINFGFQPD-IFTYNILMHGLCK--E 403

Query: 257 GIYETVNSL-KRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHM 315
           G       L   M  RGC P +  + +          L  A  +   M  R G   ++ +
Sbjct: 404 GSLSFARDLVNEMSRRGCEPNVITYAILVNGLCKAGLLEEAGLVLHEMSAR-GLTINSVI 462

Query: 316 YNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
           YN +I   C   +   A+ LL EM   G  PD+ TYN L   L K  ++ EA  LF+ M+
Sbjct: 463 YNCLICALCRKEKVHVALNLLSEMCTKGCKPDLFTYNSLIYGLCKVDRIDEAFRLFHNML 522

Query: 376 KNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLP 435
            +  V N+      +   +       A+     M+   C+    T N L+   C +  + 
Sbjct: 523 LDGAVANNVTYNTLIHALLRRGAFQKALTLVNDMLFRGCTLDKITYNGLIKAFCKVGNIE 582

Query: 436 EAVKYAKGMAEKGIQVTPFALSKLKQILIKARK 468
           + ++  + M   G+     + + +   L K  K
Sbjct: 583 KGLELYEQMIMDGLGADTISCNIMINGLCKVGK 615



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 96/411 (23%), Positives = 168/411 (40%), Gaps = 34/411 (8%)

Query: 57  VLDKTLIRVSQETV---EQVLKFSYSH------PGPAVKFFRWSAYQLNDKHSPY----- 102
           ++DK L+++ +E +   E +      H      PG A++        L D  + Y     
Sbjct: 130 LIDKLLMQMKEEGIVFRESIFMIIMKHYGKAGQPGQAIRL-------LLDMRAVYLCEPT 182

Query: 103 --AWNLVVDLL-GKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFD 159
             +++LV+++L   NC   A       + K    ++ TF  V  +  + + V  A +   
Sbjct: 183 FKSYDLVLEILVTGNCPQVATNVFYDMLSKGVSPTVFTFGIVMKALCMFNEVDSACSLLR 242

Query: 160 VMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR--VVDGRIKPDNDTYAILLEGWEKE 217
            M ++GC  +     +L+ A+ +  +  +A + L    V G + PD  T+  ++ G  K 
Sbjct: 243 DMTKHGCVPNSIVYQTLIHALSQKNQVSEALKLLEEMFVMGCM-PDVQTFNDVIHGLCKV 301

Query: 218 RDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGM 277
             + +A K    M++  G+ PDN+  Y      LL G   I +   + K +++  C    
Sbjct: 302 NKIHDATKLVDRMLLR-GFYPDNM-TYG----FLLHGLCRIGKLNEARKILIKIPCPNNA 355

Query: 278 TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLD 337
               L     ++GQ      F+   M+   GF+PD   YN+++   C       A  L++
Sbjct: 356 ILNTLINGYVMSGQLKEAQSFLNETMI-NFGFQPDIFTYNILMHGLCKEGSLSFARDLVN 414

Query: 338 EMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSD 397
           EM   G  P++ TY IL   L K   L EA  + +EM      +N       +      +
Sbjct: 415 EMSRRGCEPNVITYAILVNGLCKAGLLEEAGLVLHEMSARGLTINSVIYNCLICALCRKE 474

Query: 398 DPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448
             +VA+     M    C     T N L+ GLC +  + EA +    M   G
Sbjct: 475 KVHVALNLLSEMCTKGCKPDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDG 525



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 70/341 (20%), Positives = 140/341 (41%), Gaps = 41/341 (12%)

Query: 110 LLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTF-DVMEQYGCKH 168
           LL   C    + +A K + K    + A   ++ + YV++ ++K+A +   + M  +G + 
Sbjct: 329 LLHGLCRIGKLNEARKILIKIPCPNNAILNTLINGYVMSGQLKEAQSFLNETMINFGFQP 388

Query: 169 DVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTF 227
           D+F  N L+  +C++G    A   +  +  R  +P+  TYAIL+ G  K   +  A    
Sbjct: 389 DIFTYNILMHGLCKEGSLSFARDLVNEMSRRGCEPNVITYAILVNGLCKAGLLEEAGLVL 448

Query: 228 GEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEEC 287
            EM    G   ++V  Y+  +  L +  + ++  +N L  M  +GC              
Sbjct: 449 HEMSAR-GLTINSV-IYNCLICALCRK-EKVHVALNLLSEMCTKGC-------------- 491

Query: 288 LTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPD 347
                                 +PD   YN +I   C  +    A +L   M+ +GA  +
Sbjct: 492 ----------------------KPDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDGAVAN 529

Query: 348 IQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWK 407
             TYN L   L++     +A  L N+M+     L+       ++ +    +    ++ ++
Sbjct: 530 NVTYNTLIHALLRRGAFQKALTLVNDMLFRGCTLDKITYNGLIKAFCKVGNIEKGLELYE 589

Query: 408 YMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448
            MI +     + + N+++ GLC +  +  A ++ +    +G
Sbjct: 590 QMIMDGLGADTISCNIMINGLCKVGKVDNAFEFLRDAINRG 630



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 70/277 (25%), Positives = 121/277 (43%), Gaps = 10/277 (3%)

Query: 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDV 160
           + +N+++  L K        D +  M +     ++ T+A + +    A  +++A      
Sbjct: 391 FTYNILMHGLCKEGSLSFARDLVNEMSRRGCEPNVITYAILVNGLCKAGLLEEAGLVLHE 450

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERD 219
           M   G   +    N L+ A+CR  K   A   L  +     KPD  TY  L+ G  K   
Sbjct: 451 MSARGLTINSVIYNCLICALCRKEKVHVALNLLSEMCTKGCKPDLFTYNSLIYGLCKVDR 510

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSL-KRMMERGCN-PGM 277
           +  A + F  M+++ G   +NV  Y++ +  LL+   G ++   +L   M+ RGC    +
Sbjct: 511 IDEAFRLFHNMLLD-GAVANNV-TYNTLIHALLR--RGAFQKALTLVNDMLFRGCTLDKI 566

Query: 278 TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLD 337
           T+  L    C  G   +G E     ++  +G   DT   N+MI+  C   +   A + L 
Sbjct: 567 TYNGLIKAFCKVGNIEKGLELYEQMIMDGLG--ADTISCNIMINGLCKVGKVDNAFEFLR 624

Query: 338 EMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
           + +  G  PDI TYN +   L K  ++ EA  LF+ +
Sbjct: 625 DAINRGFVPDIVTYNSVLNGLCKVGRIKEALNLFDRL 661



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 55/232 (23%), Positives = 95/232 (40%), Gaps = 9/232 (3%)

Query: 149 DRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR--VVDGRIKPDNDT 206
           ++V  A+     M   GCK D+F  NSL+  +C+  +  +A++     ++DG +  +N T
Sbjct: 474 EKVHVALNLLSEMCTKGCKPDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDGAV-ANNVT 532

Query: 207 YAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLK 266
           Y  L+    +      A     +M+   G   D +  Y+  LI        I + +   +
Sbjct: 533 YNTLIHALLRRGAFQKALTLVNDMLFR-GCTLDKI-TYNG-LIKAFCKVGNIEKGLELYE 589

Query: 267 RMMERGCNPGMTFFKLAFEE-CLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCY 325
           +M+  G         +     C  G+     EF+  A + R GF PD   YN +++  C 
Sbjct: 590 QMIMDGLGADTISCNIMINGLCKVGKVDNAFEFLRDA-INR-GFVPDIVTYNSVLNGLCK 647

Query: 326 SNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKN 377
                 A+ L D +   G  PD  TYN    +  K   + +A   F   ++N
Sbjct: 648 VGRIKEALNLFDRLQVEGVRPDAFTYNTFISWQCKEGMVNDACSFFYRGIEN 699



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 53/107 (49%), Gaps = 4/107 (3%)

Query: 117 FDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSL 176
           F+ + DAI    +  V  + T+ SV +      R+K+A+  FD ++  G + D F  N+ 
Sbjct: 620 FEFLRDAIN---RGFVPDIVTYNSVLNGLCKVGRIKEALNLFDRLQVEGVRPDAFTYNTF 676

Query: 177 LSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERDVAN 222
           +S  C++G   DA  F  R ++    P N T+ +L+    K+ +  N
Sbjct: 677 ISWQCKEGMVNDACSFFYRGIENGFVPSNLTWNVLVYTLLKQSNQEN 723



 Score = 45.8 bits (107), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 60/273 (21%), Positives = 103/273 (37%), Gaps = 15/273 (5%)

Query: 99  HSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLS----------LATFASVFSSYVVA 148
           H   A  L ++ +  NCL  A+    K     N+LS          L T+ S+       
Sbjct: 449 HEMSARGLTINSVIYNCLICALCRKEKVHVALNLLSEMCTKGCKPDLFTYNSLIYGLCKV 508

Query: 149 DRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTY 207
           DR+ +A   F  M   G   +    N+L+ A+ R G    A   +  +  R    D  TY
Sbjct: 509 DRIDEAFRLFHNMLLDGAVANNVTYNTLIHALLRRGAFQKALTLVNDMLFRGCTLDKITY 568

Query: 208 AILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKR 267
             L++ + K  ++    + + +M+++ G   D +    + +I  L     +      L+ 
Sbjct: 569 NGLIKAFCKVGNIEKGLELYEQMIMD-GLGADTISC--NIMINGLCKVGKVDNAFEFLRD 625

Query: 268 MMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSN 327
            + RG  P +  +            ++ A  ++  +    G RPD   YN  IS  C   
Sbjct: 626 AINRGFVPDIVTYNSVLNGLCKVGRIKEALNLFDRLQVE-GVRPDAFTYNTFISWQCKEG 684

Query: 328 ETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVK 360
               A       + NG  P   T+N+L   L+K
Sbjct: 685 MVNDACSFFYRGIENGFVPSNLTWNVLVYTLLK 717



 Score = 45.8 bits (107), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 56/211 (26%), Positives = 83/211 (39%), Gaps = 22/211 (10%)

Query: 265 LKRMMERGCNPGMTFFKLAFEECLTGQN-------LRGAEFIWGAMVGRIGFRPDTHMYN 317
           L+ M + GC P    ++      L+ +N       L    F+ G M       PD   +N
Sbjct: 241 LRDMTKHGCVPNSIVYQ-TLIHALSQKNQVSEALKLLEEMFVMGCM-------PDVQTFN 292

Query: 318 MMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM-VK 376
            +I   C  N+   A KL+D M+  G +PD  TY  L   L +  KL EA  +  ++   
Sbjct: 293 DVIHGLCKVNKIHDATKLVDRMLLRGFYPDNMTYGFLLHGLCRIGKLNEARKILIKIPCP 352

Query: 377 NENVLNHENCRAAVRVYMDSDDPYVAIKFW-KYMIENHCSDLSETGNLLVAGLCDMHMLP 435
           N  +LN       +  Y+ S     A  F  + MI         T N+L+ GLC    L 
Sbjct: 353 NNAILN-----TLINGYVMSGQLKEAQSFLNETMINFGFQPDIFTYNILMHGLCKEGSLS 407

Query: 436 EAVKYAKGMAEKGIQVTPFALSKLKQILIKA 466
            A      M+ +G +      + L   L KA
Sbjct: 408 FARDLVNEMSRRGCEPNVITYAILVNGLCKA 438


>gi|357460281|ref|XP_003600422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355489470|gb|AES70673.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 512

 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 80/291 (27%), Positives = 131/291 (45%), Gaps = 19/291 (6%)

Query: 169 DVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTF 227
           DV   N+++  +C+D    DA+ F   +V  RI P   TY  L+ G      + +A    
Sbjct: 208 DVVMYNTIIDGVCKDKLVNDAFDFYSEMVAKRICPTVVTYNTLICGLCIMGQLKDAIGLL 267

Query: 228 GEMVIEVGWDPDNV-PAYDSYLITLLKGCD--GIYETVNSLKRMMERGCNPGM-TFFKLA 283
            +M++E      N+ P   ++ I +   C    + E  N    MM++   P + T+  L 
Sbjct: 268 HKMILE------NINPTVYTFSILVDAFCKEGKVKEAKNVFVVMMKKDVKPNIVTYNSLM 321

Query: 284 FEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNG 343
              CL  + +  AE I+  M  +IG  PD H Y++MIS +C       AMKL +EM    
Sbjct: 322 NGYCLVNE-VNKAESIFNTM-AQIGVAPDVHSYSIMISGFCKIKMVDEAMKLFEEMHCKQ 379

Query: 344 AFPDIQTYNILFEFLVKGRKLWEASGLFNEM---VKNENVLNHENCRAAVRVYMDSDDPY 400
            FPD+ TYN L + L K  ++  A  L  EM    +  N++ + +   A+      D   
Sbjct: 380 IFPDVVTYNSLIDGLCKSGRISYALKLIGEMHDRGQPPNIITYNSLLDALCKNHHVDK-- 437

Query: 401 VAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQV 451
            AI+    + +++      T N+L+ GLC    L +A K  + +   G  +
Sbjct: 438 -AIELLTKLKDHNIQPSVCTYNILINGLCKSGRLKDAQKVFEDVLVNGYNI 487



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 83/377 (22%), Positives = 153/377 (40%), Gaps = 50/377 (13%)

Query: 111 LGKNCL-FDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHD 169
           LG N L F    + +K   + + ++L T   +     +   +  A+   D +   G + +
Sbjct: 117 LGHNSLSFSVFSNILKKGYEPDAITLTT---LIKGLCLKGDIHKALHFHDKVLALGFQLN 173

Query: 170 VFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFG 228
             +  +L++ +C+ G+T  A + LR +DG+ ++ D   Y  +++G  K++ V +A   + 
Sbjct: 174 QVSYRTLINGLCKVGQTKAALEMLRRIDGKLVRLDVVMYNTIIDGVCKDKLVNDAFDFYS 233

Query: 229 EMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECL 288
           EMV +       V  Y++ LI  L     + + +  L +M+    NP +  F +  +   
Sbjct: 234 EMVAK--RICPTVVTYNT-LICGLCIMGQLKDAIGLLHKMILENINPTVYTFSILVDAFC 290

Query: 289 TGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDI 348
               ++ A+ ++  M+ +   +P+   YN +++ YC  NE   A  + + M   G  PD+
Sbjct: 291 KEGKVKEAKNVFVVMMKK-DVKPNIVTYNSLMNGYCLVNEVNKAESIFNTMAQIGVAPDV 349

Query: 349 QTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKY 408
            +Y+I+     K + + EA  LF EM                                  
Sbjct: 350 HSYSIMISGFCKIKMVDEAMKLFEEM---------------------------------- 375

Query: 409 MIENHCSDL---SETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIK 465
               HC  +     T N L+ GLC    +  A+K    M ++G        + L   L K
Sbjct: 376 ----HCKQIFPDVVTYNSLIDGLCKSGRISYALKLIGEMHDRGQPPNIITYNSLLDALCK 431

Query: 466 ARKEAVYEELLKKCKAH 482
                   ELL K K H
Sbjct: 432 NHHVDKAIELLTKLKDH 448



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 64/253 (25%), Positives = 116/253 (45%), Gaps = 10/253 (3%)

Query: 115 CLFDAMWDAIKSMKK---ENV-LSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDV 170
           C+   + DAI  + K   EN+  ++ TF+ +  ++    +VK+A   F VM +   K ++
Sbjct: 255 CIMGQLKDAIGLLHKMILENINPTVYTFSILVDAFCKEGKVKEAKNVFVVMMKKDVKPNI 314

Query: 171 FALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGE 229
              NSL++  C   +   A   F  +    + PD  +Y+I++ G+ K + V  A K F E
Sbjct: 315 VTYNSLMNGYCLVNEVNKAESIFNTMAQIGVAPDVHSYSIMISGFCKIKMVDEAMKLFEE 374

Query: 230 MVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLT 289
           M  +  + PD V  Y+S +  L K    I   +  +  M +RG  P +  +    +    
Sbjct: 375 MHCKQIF-PD-VVTYNSLIDGLCKS-GRISYALKLIGEMHDRGQPPNIITYNSLLDALCK 431

Query: 290 GQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQ 349
             ++  A  +   +      +P    YN++I+  C S     A K+ ++++ NG   D+ 
Sbjct: 432 NHHVDKAIELLTKLKDH-NIQPSVCTYNILINGLCKSGRLKDAQKVFEDVLVNGYNIDVY 490

Query: 350 TYNILFE-FLVKG 361
           TYN + + F  KG
Sbjct: 491 TYNTMIKGFCKKG 503


>gi|302795498|ref|XP_002979512.1| hypothetical protein SELMODRAFT_52562 [Selaginella moellendorffii]
 gi|300152760|gb|EFJ19401.1| hypothetical protein SELMODRAFT_52562 [Selaginella moellendorffii]
          Length = 419

 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 63/233 (27%), Positives = 105/233 (45%), Gaps = 8/233 (3%)

Query: 148 ADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV---DGRIKPDN 204
           A  V  A + F  + + G K ++   NSLL+ +C++G+   AW+    +   DG I PD 
Sbjct: 74  AGYVDRACSVFQEISKRGLKPELVTYNSLLAVLCKNGRRYAAWKLFLAMKEEDG-ISPDC 132

Query: 205 DTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNS 264
            TY+IL+       D+A   + F EM ++ G  PD V    S ++ LL  C  + +T++ 
Sbjct: 133 VTYSILITNAGDGSDIAEPCRLFLEM-MDCGCSPDIV--VHSSMVNLLFKCGDVRQTLDF 189

Query: 265 LKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYC 324
            K+M +RG    +  F       +    +  A  ++  +    G+     +YN +I  + 
Sbjct: 190 FKQMAQRGKPLSVAVFTSIIFSYVRSGRMDSAYLLFRGLRDVSGY-VHQRIYNSLICGFA 248

Query: 325 YSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKN 377
             ++   A  L  EM  N   PD  TY  +   L +  KL++A     EM  N
Sbjct: 249 NIDDVLHAFSLFKEMKANSFAPDQVTYRTMVALLARHAKLFQAQDTLEEMKAN 301



 Score = 45.4 bits (106), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 62/294 (21%), Positives = 118/294 (40%), Gaps = 11/294 (3%)

Query: 104 WNLVVDLLGKNCLFDAMWDAIKSMKKENVLS--LATFASVFSSYVVADRVKDAITTFDVM 161
           +N ++ +L KN    A W    +MK+E+ +S    T++ + ++      + +    F  M
Sbjct: 99  YNSLLAVLCKNGRRYAAWKLFLAMKEEDGISPDCVTYSILITNAGDGSDIAEPCRLFLEM 158

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDN-DTYAILLEGWEKERDV 220
              GC  D+   +S+++ + + G       F + +  R KP +   +  ++  + +   +
Sbjct: 159 MDCGCSPDIVVHSSMVNLLFKCGDVRQTLDFFKQMAQRGKPLSVAVFTSIIFSYVRSGRM 218

Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFF 280
            +A   F  +    G+    +  Y+S LI      D +    +  K M      P    +
Sbjct: 219 DSAYLLFRGLRDVSGYVHQRI--YNS-LICGFANIDDVLHAFSLFKEMKANSFAPDQVTY 275

Query: 281 KLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMV 340
           +           L  A+     M    G  PD   YN ++++   + +   A KLL ++ 
Sbjct: 276 RTMVALLARHAKLFQAQDTLEEMKAN-GLTPDLVTYNKLMAMLGETGDFKGAFKLLQDLE 334

Query: 341 YNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYM 394
             G   D  TY+ L   L + RK+  A  LF+E+   EN   H+ C      Y+
Sbjct: 335 SCGLQADGYTYSALLHNLGRHRKVKTACKLFDEL---EN-RGHKPCAMTYNAYV 384


>gi|356499253|ref|XP_003518456.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13420,
           mitochondrial-like [Glycine max]
          Length = 510

 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 96/417 (23%), Positives = 162/417 (38%), Gaps = 24/417 (5%)

Query: 79  SHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSL--A 136
           +H   A+  F ++    N   S  ++ L++D + K   FD  W  I  M + + L+   +
Sbjct: 79  NHSKIALSLFHYAKTLPNPPLSHSSFTLLIDTMAKVRQFDVAWQLIVEMDQRHHLTPTPS 138

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYG-CKHDVFALNSLLSAICRDGKTIDAWQFLRV 195
           TF ++    + A   + A+  F  ++ +   K        LL  +C+ G    A +    
Sbjct: 139 TFLTLIRRLICAGLTRQAVRAFHDIDAFSETKTTPQDFCVLLDTLCKYGHVRLAVEVFNK 198

Query: 196 VDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
                 P    Y +L+ GW K   +  A+    EM I+ G +P NV  Y+  L  + +  
Sbjct: 199 NKHTFPPTVKMYTVLIYGWCKIGRIKTAQSFLNEM-IDKGIEP-NVVTYNVLLNGVCRKV 256

Query: 256 D---------GIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWG--AMV 304
                      I        +M E G  P +T F +              + +    +++
Sbjct: 257 SLHPEERFERTIRNAEEVFDQMRESGIEPDVTSFSILLH---VYSRAHKPQLVLDKLSLM 313

Query: 305 GRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILF-EFLVKGRK 363
              G  P+  MY  +I           A +LL EMV +G  P   TYN  F EF  +GRK
Sbjct: 314 KEKGICPNVVMYTSVIKCLASCGWLEDAERLLGEMVRDGVSPCAATYNCFFKEF--RGRK 371

Query: 364 LWEAS-GLFNEMVKNENVLNHENCRAA-VRVYMDSDDPYVAIKFWKYMIENHCSDLSETG 421
             E++  +F  M ++   +   +     +R+++  D   V  + W+ M E       +  
Sbjct: 372 DGESALRMFKRMKEDGLCMPSSHTYVILIRMFLRLDMIKVVKEIWQDMKETGAGPDLDLY 431

Query: 422 NLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKK 478
            +L+ GLC+     EA  Y   M E G          L + LI+A     +  L KK
Sbjct: 432 TVLIHGLCERQRWREACHYFVEMIENGFLPLKGTFESLYRGLIQADMLRTWRRLKKK 488


>gi|226530981|ref|NP_001141613.1| uncharacterized protein LOC100273731 [Zea mays]
 gi|194705268|gb|ACF86718.1| unknown [Zea mays]
 gi|414870824|tpg|DAA49381.1| TPA: hypothetical protein ZEAMMB73_722490 [Zea mays]
          Length = 504

 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 87/381 (22%), Positives = 161/381 (42%), Gaps = 21/381 (5%)

Query: 45  IIANTPSPTVEDVLDKTLIRVSQETVEQVL-KFSYS--------HPGPAVKFFRWSAYQL 95
           ++ + P  +    LD+   +VS E V +VL +   S        +P  A KFF W+  Q 
Sbjct: 114 LLQDGPGFSTRHALDEMRPKVSIELVREVLFRIVVSVDSVNRERYPKLAYKFFIWAGQQE 173

Query: 96  NDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASVFSSYVVADRVKDA 154
             +HS   +NLV+ +  +     AMW   + M  + + +S  TF  +  + V     +  
Sbjct: 174 GYQHSTSMYNLVMKVFAECGEVKAMWRLFEEMAAKGLPVSSRTFHLLICASVKVGLRRRL 233

Query: 155 ITTFDVMEQYGCKHDVFALNSLL-SAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEG 213
           +  F     +  +    A N++L + +  +  ++  W   +++     PD  TY ++L  
Sbjct: 234 VERFIRSSTFNYRPFRNAFNAILYTLLTIEQYSLIEWVHEKMILEGYSPDVLTYNVVL-- 291

Query: 214 WEKERDVANAKKTFGEMVIEVGWD---PDNVPAYDSYLITLLKGCDGIYETVNSLKRMME 270
             + + +      F +++ E+G +   PD +  Y+  L  L KG D     +N L  M +
Sbjct: 292 --RAKYMLGKLDQFHQLLDEMGKNGLTPD-LHTYNLLLHVLGKG-DKPLAALNLLNYMSD 347

Query: 271 RGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETG 330
            GC P +  F    +      NL    + +  M+ + G  PD   Y +MI+ Y  + E  
Sbjct: 348 VGCRPNVLHFTNLIDGLGRAGNLEACRYFFDEMMKK-GCDPDVVCYTVMIASYVAAGEFE 406

Query: 331 AAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAV 390
            A +  D+M+  G  P++ TYN + + L    +  +A  +  +M  +    N     + V
Sbjct: 407 EAQRFFDDMLMRGQLPNVYTYNSMIQGLCAVGEFDKAFTMLKDMDSHGCTPNFSVYSSLV 466

Query: 391 RVYMDSDDPYVAIKFWKYMIE 411
           R   ++     A    KYM +
Sbjct: 467 RRLRNAGKDTQANNVIKYMTD 487


>gi|357477483|ref|XP_003609027.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510082|gb|AES91224.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 583

 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 81/318 (25%), Positives = 128/318 (40%), Gaps = 44/318 (13%)

Query: 136 ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGK---TIDAWQF 192
            TF ++   +   + V  A   F+ M++ G K ++   NSL++ +C +GK    ID W  
Sbjct: 274 VTFNTLIDGFCKDENVAAAKKAFEEMQKQGLKPNIVTYNSLINGLCNNGKLEEAIDLWD- 332

Query: 193 LRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
            ++V   +KP+  TY  L+ G+ K++ +  A K F           D+V   +       
Sbjct: 333 -KMVGLGLKPNIVTYNALINGFCKKKMMKEATKVF-----------DDVSKQE------- 373

Query: 253 KGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD 312
                +   V +   M++  C  GM   +  F  C              +M+   G  P+
Sbjct: 374 -----LVPNVITFNTMIDAYCKEGM--MEEGFSLC-------------SSMLDE-GILPN 412

Query: 313 THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFN 372
              YN +I+  C   +  AA +LL+EM   G   D+ TYNIL + L K  K   A  L N
Sbjct: 413 VSTYNCLIAGLCRKQDLQAAKELLNEMENKGLKGDVVTYNILIDGLCKNDKSRNAEKLLN 472

Query: 373 EMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMH 432
           EM       NH      +  Y        A+     M +        T N+L+ G C ++
Sbjct: 473 EMFNLGLKPNHVTYNTLMDGYCMEGKLKAALNVRTRMEKERKQPNVVTYNVLIKGYCKIN 532

Query: 433 MLPEAVKYAKGMAEKGIQ 450
            L  A      M EKG+ 
Sbjct: 533 KLEAANGLLNEMLEKGLN 550



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 84/336 (25%), Positives = 142/336 (42%), Gaps = 6/336 (1%)

Query: 144 SYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDA-WQFLRVVDGRIKP 202
           +YV    +  A   F   + YG K  + + N LLSA+ ++ K  D  + +  ++  RI  
Sbjct: 139 AYVKNLELHCAYEAFTRAKDYGFKLSLTSCNPLLSALVKENKIGDVEYVYKEMIKRRIHT 198

Query: 203 DNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLK-GCDG-IYE 260
           + +T+ I + G  +   +  A+    +M    G  P NV  Y++ +    K G  G +Y+
Sbjct: 199 NLNTFNIFINGLCRAGKLNKAEDAIEDMK-AWGISP-NVVTYNTLVDGYCKRGSAGKMYK 256

Query: 261 TVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMI 320
               +K M+     P    F    +     +N+  A+  +  M  + G +P+   YN +I
Sbjct: 257 AEAFMKEMLANKICPNEVTFNTLIDGFCKDENVAAAKKAFEEM-QKQGLKPNIVTYNSLI 315

Query: 321 SLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENV 380
           +  C + +   A+ L D+MV  G  P+I TYN L     K + + EA+ +F+++ K E V
Sbjct: 316 NGLCNNGKLEEAIDLWDKMVGLGLKPNIVTYNALINGFCKKKMMKEATKVFDDVSKQELV 375

Query: 381 LNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKY 440
            N       +  Y               M++        T N L+AGLC    L  A + 
Sbjct: 376 PNVITFNTMIDAYCKEGMMEEGFSLCSSMLDEGILPNVSTYNCLIAGLCRKQDLQAAKEL 435

Query: 441 AKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELL 476
              M  KG++      + L   L K  K    E+LL
Sbjct: 436 LNEMENKGLKGDVVTYNILIDGLCKNDKSRNAEKLL 471



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 65/246 (26%), Positives = 116/246 (47%), Gaps = 12/246 (4%)

Query: 120 MWDAIKSMK-KENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLS 178
           +WD +  +  K N++   T+ ++ + +     +K+A   FD + +     +V   N+++ 
Sbjct: 330 LWDKMVGLGLKPNIV---TYNALINGFCKKKMMKEATKVFDDVSKQELVPNVITFNTMID 386

Query: 179 AICRDGKTIDAWQFLR-VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWD 237
           A C++G   + +     ++D  I P+  TY  L+ G  +++D+  AK+   EM  E    
Sbjct: 387 AYCKEGMMEEGFSLCSSMLDEGILPNVSTYNCLIAGLCRKQDLQAAKELLNEM--ENKGL 444

Query: 238 PDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPG-MTFFKLAFEECLTGQNLRGA 296
             +V  Y+  +  L K  D        L  M   G  P  +T+  L    C+ G+ L+ A
Sbjct: 445 KGDVVTYNILIDGLCKN-DKSRNAEKLLNEMFNLGLKPNHVTYNTLMDGYCMEGK-LKAA 502

Query: 297 EFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNIL-F 355
             +   M  +   +P+   YN++I  YC  N+  AA  LL+EM+  G  P+  TY+I+  
Sbjct: 503 LNVRTRM-EKERKQPNVVTYNVLIKGYCKINKLEAANGLLNEMLEKGLNPNRTTYDIVRL 561

Query: 356 EFLVKG 361
           E L KG
Sbjct: 562 EMLEKG 567


>gi|115458970|ref|NP_001053085.1| Os04g0477200 [Oryza sativa Japonica Group]
 gi|113564656|dbj|BAF14999.1| Os04g0477200, partial [Oryza sativa Japonica Group]
          Length = 528

 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 85/339 (25%), Positives = 143/339 (42%), Gaps = 34/339 (10%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGC----------------KHDVFALNSLL 177
           + A FA +F       R+    TTF++M ++ C                + +    N+++
Sbjct: 98  AFALFADMFRL-----RLPLCTTTFNIMLRHLCSAGKPARALELLRQMPRPNAVTYNTVI 152

Query: 178 SAICRDGKTIDAWQFLRVVD--GRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVG 235
           +  C  G+   A   +R +   G I P+  TY  ++ GW K   V  A K F EM+ +  
Sbjct: 153 AGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGE 212

Query: 236 WDPDNVPAYDSYLITLLKG-CD-GIYETVNSLK-RMMERGCNPGMTFFKLAFEEC-LTGQ 291
             P+ V  Y++    L+ G CD G  +T    + RM+ERG    +  + L      + G+
Sbjct: 213 VKPEAV-MYNA----LIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGR 267

Query: 292 NLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTY 351
                E +    +G  G  PD   YN++I+ +C       A+++ + M   G    + TY
Sbjct: 268 GTEAYELVE--EMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTY 325

Query: 352 NILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIE 411
             L   L K  ++ E   LF+E V+     +     A +  +  S +   A +    M +
Sbjct: 326 TALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEK 385

Query: 412 NHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQ 450
              +    T N L+ GLC +  + EA K    M E+GIQ
Sbjct: 386 KRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQ 424



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 73/297 (24%), Positives = 119/297 (40%), Gaps = 43/297 (14%)

Query: 116 LFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNS 175
           +FD M      +K E V+    + ++   Y    ++  A+   D M + G    V   N 
Sbjct: 203 VFDEMLTK-GEVKPEAVM----YNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNL 257

Query: 176 LLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEV 234
           L+ A+  DG+  +A++ +  + G+ + PD  TY IL+ G  KE +V  A + F  M    
Sbjct: 258 LVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRR- 316

Query: 235 GWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLR 294
                 V  Y + +  L K    + ET       + RG  P +  +        T  N+ 
Sbjct: 317 -GVRATVVTYTALIYALSKKGQ-VQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNID 374

Query: 295 GAEFIWGAM---------------------VGRI-------------GFRPDTHMYNMMI 320
            A  I G M                     +GR+             G +PD   YN +I
Sbjct: 375 RAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLI 434

Query: 321 SLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKN 377
           S Y    +   A+++ +EM+  G  P + TYN L + L K  +  +A  +  EMV+N
Sbjct: 435 SGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVEN 491



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 65/264 (24%), Positives = 117/264 (44%), Gaps = 18/264 (6%)

Query: 104 WNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVME 162
           +NL+V  L  +      ++ ++ M  + +   + T+  + + +     VK A+  F+ M 
Sbjct: 255 YNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMS 314

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDVA 221
           + G +  V    +L+ A+ + G+  +  + F   V   I+PD   Y  L+       ++ 
Sbjct: 315 RRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNID 374

Query: 222 NAKKTFGEMVIEVGWDPDNVPAYDSYL--ITLLKGCDGIYETVNSLKRMMERGCNPGMTF 279
            A +  GEM  +    PD+V  Y++ +  + LL   D   E    +  M ERG  P +  
Sbjct: 375 RAFEIMGEME-KKRIAPDDV-TYNTLMRGLCLLGRVD---EARKLIDEMTERGIQPDL-- 427

Query: 280 FKLAFEECLTGQNLRG----AEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKL 335
             + +   ++G +++G    A  I   M+ + GF P    YN +I   C + +   A  +
Sbjct: 428 --VTYNTLISGYSMKGDVKDALRIRNEMMNK-GFNPTLLTYNALIQGLCKNGQGDDAENM 484

Query: 336 LDEMVYNGAFPDIQTYNILFEFLV 359
           + EMV NG  PD  TY  L E L 
Sbjct: 485 VKEMVENGITPDDSTYISLIEGLT 508


>gi|242067353|ref|XP_002448953.1| hypothetical protein SORBIDRAFT_05g002330 [Sorghum bicolor]
 gi|241934796|gb|EES07941.1| hypothetical protein SORBIDRAFT_05g002330 [Sorghum bicolor]
          Length = 734

 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 79/341 (23%), Positives = 136/341 (39%), Gaps = 55/341 (16%)

Query: 138 FASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDA-WQFLRVV 196
           F   FS+Y     +  A+  F+ M Q+G   +V    +L+ A+C+ G+  DA  +F +++
Sbjct: 312 FNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAEVKFNQMI 371

Query: 197 DGRIKPDNDTYAILLEG------WEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLIT 250
           +  + P+   +  L+ G      WE+  ++                              
Sbjct: 372 NEGVTPNIVVFNSLVYGLCTVDKWERAEEL------------------------------ 401

Query: 251 LLKGCDGIYETVNSLKRMMERGCNPGMTFFK-LAFEECLTGQNLRGAEFIWGAMVGRIGF 309
                  +YE       M+++G  P   FF  L    C  G+ + G   I   ++  +G 
Sbjct: 402 -------VYE-------MLDQGICPNAVFFNTLICNLCNVGRVMEGRRLI--DLMEHVGV 445

Query: 310 RPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASG 369
           RPD   Y  +IS YC +  T  A K+ D MV  G  P   TYN L        ++ +A  
Sbjct: 446 RPDAFSYTPLISGYCLAGRTDEAEKVFDGMVSIGLSPTEVTYNTLLHGYCSASRIDDAYC 505

Query: 370 LFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLC 429
           LF EM++             +     +     A + +  MI +       T N+++ GLC
Sbjct: 506 LFREMLRKGVTPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKCDIYTYNIILNGLC 565

Query: 430 DMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIK-ARKE 469
             + + EA K  + +  KG+Q+     + +   L+K  RKE
Sbjct: 566 KSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGRKE 606



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 81/326 (24%), Positives = 139/326 (42%), Gaps = 26/326 (7%)

Query: 136 ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTI-DAWQFL- 193
            T++ +        R+K +  TF ++ + G + +   +N LL  +C DGK + +A   L 
Sbjct: 99  CTYSILIGCLCRMGRLKHSFATFGLILKTGWRVNDIVINQLLKGLC-DGKRVGEAMDVLL 157

Query: 194 -RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWD-PDNVPAYDSYLITL 251
            R+ +    PD  +Y+ILL+G+  E     A +    M  + G   P NV  Y + +  L
Sbjct: 158 QRMPELGCTPDTVSYSILLKGFCNENRAEEALELLRMMANDHGRSCPPNVVTYTTVIDGL 217

Query: 252 LKG-----CDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGR 306
            K       +G+++      +M++ G  P    +       L+    +    +   M  R
Sbjct: 218 CKAQLFDRAEGVFQ------QMIDNGVKPNNDTYNCLIHGYLSIGKWKEVVQMLEKMSAR 271

Query: 307 IGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWE 366
            G +PD + Y  +++  C  +E  +    LD MV NG  PD   +NI F    K   + +
Sbjct: 272 -GLKPDCYTYGSLLNYLCALSEMHS---FLDLMVENGLSPDHHIFNIFFSAYAKCGMIDK 327

Query: 367 ASGLFNEMVK---NENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNL 423
           A  +FN+M +   + NV+N+     A+      DD  V    +  MI    +      N 
Sbjct: 328 AMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAEVK---FNQMINEGVTPNIVVFNS 384

Query: 424 LVAGLCDMHMLPEAVKYAKGMAEKGI 449
           LV GLC +     A +    M ++GI
Sbjct: 385 LVYGLCTVDKWERAEELVYEMLDQGI 410



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 87/406 (21%), Positives = 152/406 (37%), Gaps = 55/406 (13%)

Query: 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDV 160
           + +N+      K  + D   D    M++  +  ++  + ++  +     RV DA   F+ 
Sbjct: 310 HIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAEVKFNQ 369

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-------------------FL-------- 193
           M   G   ++   NSL+  +C    T+D W+                   F         
Sbjct: 370 MINEGVTPNIVVFNSLVYGLC----TVDKWERAEELVYEMLDQGICPNAVFFNTLICNLC 425

Query: 194 ---RVVDGR----------IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDN 240
              RV++GR          ++PD  +Y  L+ G+        A+K F  MV  +G  P  
Sbjct: 426 NVGRVMEGRRLIDLMEHVGVRPDAFSYTPLISGYCLAGRTDEAEKVFDGMV-SIGLSPTE 484

Query: 241 VPAYDSYLITLLKG-CDG--IYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAE 297
           V  Y+    TLL G C    I +     + M+ +G  PG+  +          +    A+
Sbjct: 485 V-TYN----TLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTILHGLFQTKRFSEAK 539

Query: 298 FIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEF 357
            ++  M+   G + D + YN++++  C SN    A K+   +   G   +I T+ I+   
Sbjct: 540 ELYLNMINS-GTKCDIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGA 598

Query: 358 LVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDL 417
           L+KG +  +A  LF  +  N  V N    R      ++          +  M +N  +  
Sbjct: 599 LLKGGRKEDAMDLFAAIPANGLVPNVVTYRLVAENLIEEGSLEEFDSLFSAMEKNGTAPN 658

Query: 418 SETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQIL 463
           S+  N LV  L     +  A  Y   + E+   V     S L  I 
Sbjct: 659 SQMLNALVRRLLHRGDISRAGAYLSKLDERNFSVEASTTSLLISIF 704



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 73/330 (22%), Positives = 136/330 (41%), Gaps = 51/330 (15%)

Query: 157 TFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDG-RIKPDNDTYAILLEGWE 215
            +++++Q  C + VF  N+L+  +C  G+ ++  + + +++   ++PD  +Y  L+ G+ 
Sbjct: 402 VYEMLDQGICPNAVF-FNTLICNLCNVGRVMEGRRLIDLMEHVGVRPDAFSYTPLISGYC 460

Query: 216 KERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG-CDG--IYETVNSLKRMMERG 272
                  A+K F  MV  +G  P  V  Y+    TLL G C    I +     + M+ +G
Sbjct: 461 LAGRTDEAEKVFDGMV-SIGLSPTEV-TYN----TLLHGYCSASRIDDAYCLFREMLRKG 514

Query: 273 CNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAA 332
             PG+  +          +    A+ ++  M+   G + D + YN++++  C SN    A
Sbjct: 515 VTPGVVTYNTILHGLFQTKRFSEAKELYLNMINS-GTKCDIYTYNIILNGLCKSNCVDEA 573

Query: 333 MKLLDEMVY-----------------------------------NGAFPDIQTYNILFEF 357
            K+   +                                     NG  P++ TY ++ E 
Sbjct: 574 FKMFQSLCSKGLQLNIITFTIMIGALLKGGRKEDAMDLFAAIPANGLVPNVVTYRLVAEN 633

Query: 358 LVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDL 417
           L++   L E   LF+ M KN    N +   A VR  +   D   A  +   + E + S  
Sbjct: 634 LIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRLLHRGDISRAGAYLSKLDERNFSVE 693

Query: 418 SETGNLLVAGLCDMHMLPEAVKYAKGMAEK 447
           + T +LL++    +    E   +AK + EK
Sbjct: 694 ASTTSLLIS----IFTSDEYQHHAKSLPEK 719



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 61/283 (21%), Positives = 114/283 (40%), Gaps = 71/283 (25%)

Query: 151 VKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAW---------------QFLRV 195
           + DA+  FD +  +     V A N +L+A+ R  +                    + +R 
Sbjct: 30  LDDALKLFDELLIHARPASVVAFNQILNAVSRASRASGRRSSSTSESELVVSLFNRMVRE 89

Query: 196 VDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG- 254
              ++ P+  TY+IL+    +   + ++  TFG ++++ GW  +     D  +  LLKG 
Sbjct: 90  CSIKVAPNTCTYSILIGCLCRMGRLKHSFATFG-LILKTGWRVN-----DIVINQLLKGL 143

Query: 255 CDG--IYETVNS-LKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRP 311
           CDG  + E ++  L+RM E GC                                     P
Sbjct: 144 CDGKRVGEAMDVLLQRMPELGCT------------------------------------P 167

Query: 312 DTHMYNMMISLYCYSNETGAAMKLLDEMVYN---GAFPDIQTYNILFEFLVKGRKLWEAS 368
           DT  Y++++  +C  N    A++LL  M  +      P++ TY  + + L K +    A 
Sbjct: 168 DTVSYSILLKGFCNENRAEEALELLRMMANDHGRSCPPNVVTYTTVIDGLCKAQLFDRAE 227

Query: 369 GLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIE 411
           G+F +M+ N    N++     +         Y++I  WK +++
Sbjct: 228 GVFQQMIDNGVKPNNDTYNCLIH-------GYLSIGKWKEVVQ 263


>gi|297605196|ref|NP_001056837.2| Os06g0152500 [Oryza sativa Japonica Group]
 gi|255676726|dbj|BAF18751.2| Os06g0152500 [Oryza sativa Japonica Group]
          Length = 717

 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 85/341 (24%), Positives = 149/341 (43%), Gaps = 11/341 (3%)

Query: 124 IKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICR 182
           + SM +  V  ++ T+  +  +     R+++A+     M   GC  +    N+L++A CR
Sbjct: 140 LSSMLRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCR 199

Query: 183 DGKTIDAWQFLRVV--DGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDN 240
            G+   A + + ++  +G  KP+  T+  ++ G  K   +  A+K F EMV E G  PD 
Sbjct: 200 AGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVRE-GLAPD- 257

Query: 241 VPAYDSYLITLLK-GCDGIYETVNSLKRMMERGCNPG-MTFFKLAFEECLTGQNLRGAEF 298
           V +Y++ L    K GC  ++E++     M +RG  P  +TF  L    C  G NL  A  
Sbjct: 258 VVSYNTLLSGYCKVGC--LHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAG-NLEQAVA 314

Query: 299 IWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFL 358
           +   M  R G R +   +  +I  +C       A+  ++EM   G  P +  YN L    
Sbjct: 315 LVAQMRER-GLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGY 373

Query: 359 VKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLS 418
            K  ++  A  L  EM       +       +  Y    +   A +  + M++      +
Sbjct: 374 CKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDA 433

Query: 419 ETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKL 459
            T + L+ GLC+   L +A +  + M + G+Q   F  + L
Sbjct: 434 ITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTL 474



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 102/236 (43%), Gaps = 40/236 (16%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           TF ++   +     + DA+   + M + G +  V   N+L++  C+ G+   A + +R +
Sbjct: 330 TFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREM 389

Query: 197 DG-RIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
           +  R+KPD  TY+ ++ G+ K  ++ +A +   + +++ G  PD +              
Sbjct: 390 EAKRVKPDVVTYSTIISGYCKVGNLDSAFQ-LNQKMLKKGVLPDAI-------------- 434

Query: 256 DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHM 315
                T +SL R        G+   K   + C   +N+            ++G +PD   
Sbjct: 435 -----TYSSLIR--------GLCEEKRLNDACELFENML-----------QLGVQPDEFT 470

Query: 316 YNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLF 371
           Y  +I  +C       A+ L DEM+  G  PD+ TY++L   L K  +  EA  L 
Sbjct: 471 YTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLL 526



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 64/260 (24%), Positives = 108/260 (41%), Gaps = 4/260 (1%)

Query: 223 AKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNP-GMTFFK 281
           + + F   ++  G  P NV  Y+  L+  L     + E V  +  M   GC P  +T+  
Sbjct: 135 SARRFLSSMLRHGVAP-NVYTYN-ILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNT 192

Query: 282 LAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVY 341
           L    C  G+ L GAE +   M      +P+   +N M++  C +     A K+ DEMV 
Sbjct: 193 LVAAFCRAGE-LDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVR 251

Query: 342 NGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYV 401
            G  PD+ +YN L     K   L E+  +F+EM +   V +     + +     + +   
Sbjct: 252 EGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQ 311

Query: 402 AIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQ 461
           A+     M E        T   L+ G C    L +A+   + M + GIQ +    + L  
Sbjct: 312 AVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALIN 371

Query: 462 ILIKARKEAVYEELLKKCKA 481
              K  +  +  EL+++ +A
Sbjct: 372 GYCKLGRMDLARELIREMEA 391


>gi|125532572|gb|EAY79137.1| hypothetical protein OsI_34244 [Oryza sativa Indica Group]
          Length = 508

 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 80/323 (24%), Positives = 136/323 (42%), Gaps = 23/323 (7%)

Query: 45  IIANTPSPTVEDVLDKTLIRVSQETVEQVL-KFSYS--------HPGPAVKFFRWSAYQL 95
           ++ + P       LD+   RVS   V +VL KF  S        +P  A KFF W+  Q 
Sbjct: 118 LLQDGPGFNTRQALDEMRPRVSNALVREVLLKFVVSIDGVNRARYPRLAYKFFLWAEDQE 177

Query: 96  NDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASVFSSYVVADRVKDA 154
             +H    +NL++ +  +     AMW  ++ M  + + +S  TF  +  +   A   +  
Sbjct: 178 GYRHGTSMYNLILKIFAECGELKAMWRLLEDMTDKGLPVSSRTFHLLVCTSGRAGLRRRL 237

Query: 155 ITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRI-----KPDNDTYAI 209
           +  F     +  +    + N++L  +     TI+ +  +  V  ++      PD  TY +
Sbjct: 238 VERFIKSSNFNYRPFRNSFNAILHTLL----TIEQYSLIEWVHQKMIAEGHSPDVLTYNV 293

Query: 210 LLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMM 269
           ++        +    K   EM  + G  PD +  Y+  L  L KG D     +N L  M 
Sbjct: 294 VMRAKYMLGKLNQFHKLLDEMG-KNGLAPD-LYTYNLLLHVLGKG-DKPLAALNLLNYMS 350

Query: 270 ERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNET 329
           + GC P +  F    +      NL   ++ +  MV + G +PD   Y +MI+ Y  + E 
Sbjct: 351 DVGCVPTVLHFTNLIDGLSRAGNLEACKYFFDEMVKK-GCQPDVVCYTVMITGYVAAGEF 409

Query: 330 GAAMKLLDEMVYNGAFPDIQTYN 352
             A K  D+M+  G  P++ TYN
Sbjct: 410 DEAQKFFDDMLLRGQLPNVYTYN 432



 Score = 45.8 bits (107), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 33/67 (49%)

Query: 308 GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEA 367
           G  PD   YN+++       +     KLLDEM  NG  PD+ TYN+L   L KG K   A
Sbjct: 283 GHSPDVLTYNVVMRAKYMLGKLNQFHKLLDEMGKNGLAPDLYTYNLLLHVLGKGDKPLAA 342

Query: 368 SGLFNEM 374
             L N M
Sbjct: 343 LNLLNYM 349



 Score = 45.8 bits (107), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 49/192 (25%), Positives = 85/192 (44%), Gaps = 15/192 (7%)

Query: 97  DKHSP--YAWNLVVD---LLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRV 151
           + HSP    +N+V+    +LGK   F  + D +   K      L T+  +       D+ 
Sbjct: 282 EGHSPDVLTYNVVMRAKYMLGKLNQFHKLLDEMG--KNGLAPDLYTYNLLLHVLGKGDKP 339

Query: 152 KDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL--RVVDGRIKPDNDTYAI 209
             A+   + M   GC   V    +L+  + R G  ++A ++    +V    +PD   Y +
Sbjct: 340 LAALNLLNYMSDVGCVPTVLHFTNLIDGLSRAG-NLEACKYFFDEMVKKGCQPDVVCYTV 398

Query: 210 LLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMM 269
           ++ G+    +   A+K F +M++  G  P NV  Y+S +  L     G ++   SL + M
Sbjct: 399 MITGYVAAGEFDEAQKFFDDMLLR-GQLP-NVYTYNSMICGLC--IVGEFDKACSLLKDM 454

Query: 270 E-RGCNPGMTFF 280
           E RGC P  T +
Sbjct: 455 ESRGCTPNFTVY 466



 Score = 45.4 bits (106), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 71/174 (40%), Gaps = 14/174 (8%)

Query: 304 VGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRK 363
           +G+ G  PD + YN+++ +    ++  AA+ LL+ M   G  P +  +  L + L +   
Sbjct: 314 MGKNGLAPDLYTYNLLLHVLGKGDKPLAALNLLNYMSDVGCVPTVLHFTNLIDGLSRAGN 373

Query: 364 LWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAI-------KFWKYMIENHCSD 416
           L      F+EMVK       + C+  V  Y      YVA        KF+  M+      
Sbjct: 374 LEACKYFFDEMVK-------KGCQPDVVCYTVMITGYVAAGEFDEAQKFFDDMLLRGQLP 426

Query: 417 LSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEA 470
              T N ++ GLC +    +A    K M  +G        S L   L  A K++
Sbjct: 427 NVYTYNSMICGLCIVGEFDKACSLLKDMESRGCTPNFTVYSTLVSRLRNAGKDS 480


>gi|356518209|ref|XP_003527773.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic-like [Glycine max]
          Length = 1113

 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 76/334 (22%), Positives = 135/334 (40%), Gaps = 39/334 (11%)

Query: 77  SYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENV-LSL 135
           S S P  A+ +F+  +   N  H+P   N +++ L  +   + M      M+K+ +  + 
Sbjct: 98  SISDPNSALSYFKMVSQLPNIVHTPETCNYMLEFLRVHGRVEDMAFVFDLMQKQVINRNP 157

Query: 136 ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLR 194
            T+ ++F +  +   ++ A      M Q G   + ++ N L+  + + G   +A + + R
Sbjct: 158 NTYLTIFKALSIKGGIRQAPFALGKMRQAGFVLNAYSYNGLIYFLLQPGFCKEALKVYKR 217

Query: 195 VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG 254
           ++   +KP   TY+ L+    + RD         EM   +G  P N+  Y +  I +L  
Sbjct: 218 MISEGLKPSMKTYSALMVALGRRRDTGTIMDLLEEME-TLGLRP-NIYTY-TICIRVLGR 274

Query: 255 CDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAM----------- 303
              I +    LK M + GC P +  + +  +       L  A+ ++  M           
Sbjct: 275 AGRIDDAYGILKTMEDEGCGPDVVTYTVLIDALCAAGKLDKAKELYTKMRASSHKPDLVT 334

Query: 304 ----------------VGRI-------GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMV 340
                           V R        G+ PD   Y +++   C S +   A  +LD M 
Sbjct: 335 YITLMSKFGNYGDLETVKRFWSEMEADGYAPDVVTYTILVEALCKSGKVDQAFDMLDVMR 394

Query: 341 YNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
             G  P++ TYN L   L+  R+L EA  LFN M
Sbjct: 395 VRGIVPNLHTYNTLISGLLNLRRLDEALELFNNM 428



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 72/251 (28%), Positives = 111/251 (44%), Gaps = 10/251 (3%)

Query: 126 SMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGK 185
           S  K ++++  T  S F +Y   + VK     +  ME  G   DV     L+ A+C+ GK
Sbjct: 326 SSHKPDLVTYITLMSKFGNYGDLETVK---RFWSEMEADGYAPDVVTYTILVEALCKSGK 382

Query: 186 TIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAY 244
              A+  L V+  R I P+  TY  L+ G    R +  A + F  M   +G  P    AY
Sbjct: 383 VDQAFDMLDVMRVRGIVPNLHTYNTLISGLLNLRRLDEALELFNNME-SLGVAPT---AY 438

Query: 245 DSYLITLLKGCDGIYE-TVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAM 303
              L     G  G  E  +++ ++M +RG  P +     +         +R A+ I+   
Sbjct: 439 SYVLFIDYYGKLGDPEKALDTFEKMKKRGIMPSIAACNASLYSLAEMGRIREAKDIFND- 497

Query: 304 VGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRK 363
           +   G  PD+  YNMM+  Y  + +   A KLL EM+  G  PDI   N L + L K  +
Sbjct: 498 IHNCGLSPDSVTYNMMMKCYSKAGQIDKATKLLTEMLSEGCEPDIIVVNSLIDTLYKAGR 557

Query: 364 LWEASGLFNEM 374
           + EA  +F  +
Sbjct: 558 VDEAWQMFGRL 568



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 83/343 (24%), Positives = 135/343 (39%), Gaps = 24/343 (6%)

Query: 84   AVKFFRWSAYQLNDKHSPYAWNLVVD-LLGKNCLFDAMWDAIKSMKKENVL-SLATFASV 141
            A K F      L    +P ++N ++D LLG N + +A       MK      ++ T+  +
Sbjct: 771  AKKLFDKFTKSLGTHPTPESYNCLMDGLLGCN-ITEAALKLFVEMKNAGCCPNIFTYNLL 829

Query: 142  FSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRI 200
              ++  + R+ +    ++ M   GCK ++   N ++SA+ +      A   +  ++ G  
Sbjct: 830  LDAHGKSKRIDELFELYNEMLCRGCKPNIITHNIIISALVKSNSINKALDLYYEIISGDF 889

Query: 201  KPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPD-----NVPAYDSYLITLLKGC 255
             P   TY  L+ G  K      A K F EM       PD     N   Y+  LI      
Sbjct: 890  SPTPCTYGPLIGGLLKAGRSEEAMKIFEEM-------PDYQCKPNCAIYN-ILINGFGKA 941

Query: 256  DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHM 315
              +    +  KRM++ G  P +  + +   ECL           +   +   G  PDT  
Sbjct: 942  GNVNIACDLFKRMIKEGIRPDLKSYTI-LVECLFMTGRVDDAVHYFEELKLTGLDPDTVS 1000

Query: 316  YNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNE-- 373
            YN+MI+    S     A+ L  EM   G  P++ TYN L         + +A  +F E  
Sbjct: 1001 YNLMINGLGKSRRLEEALSLFSEMKNRGISPELYTYNALILHFGNAGMVDQAGKMFEELQ 1060

Query: 374  -MVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCS 415
             M    NV  +    A +R +  S +   A   +K M+   CS
Sbjct: 1061 FMGLEPNVFTYN---ALIRGHSKSGNKDRAFSVFKKMMIVGCS 1100



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 57/228 (25%), Positives = 94/228 (41%), Gaps = 5/228 (2%)

Query: 148 ADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDT 206
           A R+ DA      ME  GC  DV     L+ A+C  GK   A + + ++     KPD  T
Sbjct: 275 AGRIDDAYGILKTMEDEGCGPDVVTYTVLIDALCAAGKLDKAKELYTKMRASSHKPDLVT 334

Query: 207 YAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLK 266
           Y  L+  +    D+   K+ + EM  + G+ PD V    + L+  L     + +  + L 
Sbjct: 335 YITLMSKFGNYGDLETVKRFWSEMEAD-GYAPDVVTY--TILVEALCKSGKVDQAFDMLD 391

Query: 267 RMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYS 326
            M  RG  P +  +       L  + L  A  ++  M   +G  P  + Y + I  Y   
Sbjct: 392 VMRVRGIVPNLHTYNTLISGLLNLRRLDEALELFNNM-ESLGVAPTAYSYVLFIDYYGKL 450

Query: 327 NETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
            +   A+   ++M   G  P I   N     L +  ++ EA  +FN++
Sbjct: 451 GDPEKALDTFEKMKKRGIMPSIAACNASLYSLAEMGRIREAKDIFNDI 498



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/224 (23%), Positives = 102/224 (45%), Gaps = 5/224 (2%)

Query: 154 AITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLE 212
           A+ TF+ M++ G    + A N+ L ++   G+  +A   F  + +  + PD+ TY ++++
Sbjct: 456 ALDTFEKMKKRGIMPSIAACNASLYSLAEMGRIREAKDIFNDIHNCGLSPDSVTYNMMMK 515

Query: 213 GWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERG 272
            + K   +  A K   EM+ E G +PD +   +S + TL K    + E      R+ +  
Sbjct: 516 CYSKAGQIDKATKLLTEMLSE-GCEPD-IIVVNSLIDTLYKA-GRVDEAWQMFGRLKDLK 572

Query: 273 CNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAA 332
             P +  + +          L  A  ++G+M    G  P+T  +N ++   C ++    A
Sbjct: 573 LAPTVVTYNILITGLGKEGKLLKALDLFGSM-KESGCPPNTVTFNALLDCLCKNDAVDLA 631

Query: 333 MKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK 376
           +K+   M      PD+ TYN +   L+K  +   A   +++M K
Sbjct: 632 LKMFCRMTIMNCSPDVLTYNTIIYGLIKEGRAGYAFWFYHQMKK 675



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 78/354 (22%), Positives = 135/354 (38%), Gaps = 44/354 (12%)

Query: 136  ATFASVFSSYVVADRVKDAI-TTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR 194
             T  ++    V   RV+DAI    + + Q G +        L+  I  + +  +A  F  
Sbjct: 682  VTLYTLLPGVVKDGRVEDAIKIVMEFVHQSGLQTSNQVWGELMECILIEAEIEEAISFAE 741

Query: 195  -VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLK 253
             +V   I  D++    L+    K++   +AKK F +    +G  P   P   + L+  L 
Sbjct: 742  GLVCNSICQDDNLILPLIRVLCKQKKALDAKKLFDKFTKSLGTHP--TPESYNCLMDGLL 799

Query: 254  GCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEF--IWGAMVGRIGFRP 311
            GC+     +     M   GC P +  + L  +    G++ R  E   ++  M+ R G +P
Sbjct: 800  GCNITEAALKLFVEMKNAGCCPNIFTYNLLLDA--HGKSKRIDELFELYNEMLCR-GCKP 856

Query: 312  DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLF 371
            +   +N++IS    SN    A+ L  E++     P   TY  L   L+K  +  EA  +F
Sbjct: 857  NIITHNIIISALVKSNSINKALDLYYEIISGDFSPTPCTYGPLIGGLLKAGRSEEAMKIF 916

Query: 372  NEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIE-------------------- 411
             EM   +   N       +  +  + +  +A   +K MI+                    
Sbjct: 917  EEMPDYQCKPNCAIYNILINGFGKAGNVNIACDLFKRMIKEGIRPDLKSYTILVECLFMT 976

Query: 412  -------NHCSDLSETG--------NLLVAGLCDMHMLPEAVKYAKGMAEKGIQ 450
                   ++  +L  TG        NL++ GL     L EA+     M  +GI 
Sbjct: 977  GRVDDAVHYFEELKLTGLDPDTVSYNLMINGLGKSRRLEEALSLFSEMKNRGIS 1030


>gi|242048586|ref|XP_002462039.1| hypothetical protein SORBIDRAFT_02g013138 [Sorghum bicolor]
 gi|241925416|gb|EER98560.1| hypothetical protein SORBIDRAFT_02g013138 [Sorghum bicolor]
          Length = 798

 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 85/334 (25%), Positives = 135/334 (40%), Gaps = 43/334 (12%)

Query: 105 NLVVDLLGKNCLFDAMWDAIKSMKK----ENVLSLATFASVFSSYVV-------ADRVKD 153
             V+ L G +CL D ++ A +  +       VL  A F+     Y +       A R+ D
Sbjct: 310 TFVLGLKGYSCLIDGLFLAGRYEEGFQCYMEVLEQADFSPDIVLYTIMIRGCAEAGRIDD 369

Query: 154 AITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLE 212
           A   FD M++     D F  N+LL A+C  G    A   +  +    +  D +T+ I++ 
Sbjct: 370 AFAFFDEMKEKRFTPDTFCYNTLLKALCDSGDLDGARSLMSEMAQNNVVLDTNTHTIMIH 429

Query: 213 GWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIY-----ETVNSLKR 267
           G  K++ V  A + F  MV EVG  P  V  Y+  +       DG+Y     E    L  
Sbjct: 430 GLCKKQLVDEAMQVFDGMV-EVGCHP-TVMTYNVLI-------DGLYRAHRLEEARMLFY 480

Query: 268 MMERGCNPGM---------------TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD 312
            ME G NP +               +  KL    C +GQ L+  + + G M    G  PD
Sbjct: 481 KMEVGNNPSLFLRLTLGANQVKDSESLQKLVDSMCQSGQVLKAYKLLRGIMDS--GVVPD 538

Query: 313 THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFN 372
              YN +++  C       A++L  E+   G   D  TY  L + L++  +  +A  LF 
Sbjct: 539 VVTYNTLLNGLCKVRNLDGALRLFRELQVKGFSLDEITYGTLIDSLLRAHRYNDAMTLFQ 598

Query: 373 EMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFW 406
           +++      +     + +R     +    AI FW
Sbjct: 599 DILHIGGTPSLSIYNSIMRSLCRMNKLSQAINFW 632



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 86/384 (22%), Positives = 158/384 (41%), Gaps = 25/384 (6%)

Query: 104 WNLVVD-LLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVME 162
           +N+++D L  +    DA+    + +++    ++ T   + SS   A ++K+A    + ME
Sbjct: 212 YNVLMDGLCKRGTAVDALKLFDEMLQRGITPNVKTHTILLSSMCNAGQLKEAENLLNSME 271

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV--DGRIKPDNDTYAILLEGWEKERDV 220
             GC  D    N+ LS +C+ G+  +A + L  +   G        Y+ L++G       
Sbjct: 272 DKGCPPDEVTYNAFLSGLCKAGRVDEAIERLEALRRTGTFVLGLKGYSCLIDGLFLAGRY 331

Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC---DGIYETVNSLKRMMERGCNPGM 277
               + + E++ +  + PD V     Y I +++GC     I +       M E+   P  
Sbjct: 332 EEGFQCYMEVLEQADFSPDIV----LYTI-MIRGCAEAGRIDDAFAFFDEMKEKRFTPDT 386

Query: 278 TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLD 337
             +    +      +L GA  +   M  +     DT+ + +MI   C       AM++ D
Sbjct: 387 FCYNTLLKALCDSGDLDGARSLMSEM-AQNNVVLDTNTHTIMIHGLCKKQLVDEAMQVFD 445

Query: 338 EMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNEN-------------VLNHE 384
            MV  G  P + TYN+L + L +  +L EA  LF +M    N             V + E
Sbjct: 446 GMVEVGCHPTVMTYNVLIDGLYRAHRLEEARMLFYKMEVGNNPSLFLRLTLGANQVKDSE 505

Query: 385 NCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGM 444
           + +  V     S     A K  + ++++       T N L+ GLC +  L  A++  + +
Sbjct: 506 SLQKLVDSMCQSGQVLKAYKLLRGIMDSGVVPDVVTYNTLLNGLCKVRNLDGALRLFREL 565

Query: 445 AEKGIQVTPFALSKLKQILIKARK 468
             KG  +       L   L++A +
Sbjct: 566 QVKGFSLDEITYGTLIDSLLRAHR 589



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 102/457 (22%), Positives = 164/457 (35%), Gaps = 67/457 (14%)

Query: 27  ASHLDVPNLPPTIKTLCEIIANTPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVK 86
           A H  +  LPP++            P+    L     R++  +V   L  +   P   ++
Sbjct: 40  ALHSLLSTLPPSL------------PSFFPCLSLLSRRLTPHSVADALLCAALPPASRLR 87

Query: 87  FFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLS-LATFASVFSSY 145
            F +SA     +        VV +L       AM+DAI   +   +    A F ++  ++
Sbjct: 88  LFLFSALTPRLRSPLLHSRAVVPILLATDADAAMYDAIADAQAAGLQPPAAAFEALIFAH 147

Query: 146 VVADRVKDAITTFDVME-QYGCKHDVFALNS----------------------------- 175
             A R  +A+  F  ME ++GC+   F  N+                             
Sbjct: 148 ASAGRHHEAVDAFSRMEGEFGCRPTTFVYNAVLRVLVASGGVVPLALALYNRMVAAGCLP 207

Query: 176 -------LLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTF 227
                  L+  +C+ G  +DA + F  ++   I P+  T+ ILL        +  A+   
Sbjct: 208 NRATYNVLMDGLCKRGTAVDALKLFDEMLQRGITPNVKTHTILLSSMCNAGQLKEAENLL 267

Query: 228 GEMVIEVGWDPDNVPAYDSYLITLLKG--CDGIYETVNSLKRMMERGCNPGMTFFKLAFE 285
             M  + G  PD V  Y+++L  L K    D   E + +L+R        G     L   
Sbjct: 268 NSME-DKGCPPDEV-TYNAFLSGLCKAGRVDEAIERLEALRR-------TGTFVLGLKGY 318

Query: 286 ECLTGQNLRGAEFIWG-----AMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMV 340
            CL         +  G      ++ +  F PD  +Y +MI     +     A    DEM 
Sbjct: 319 SCLIDGLFLAGRYEEGFQCYMEVLEQADFSPDIVLYTIMIRGCAEAGRIDDAFAFFDEMK 378

Query: 341 YNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPY 400
                PD   YN L + L     L  A  L +EM +N  VL+       +          
Sbjct: 379 EKRFTPDTFCYNTLLKALCDSGDLDGARSLMSEMAQNNVVLDTNTHTIMIHGLCKKQLVD 438

Query: 401 VAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEA 437
            A++ +  M+E  C     T N+L+ GL   H L EA
Sbjct: 439 EAMQVFDGMVEVGCHPTVMTYNVLIDGLYRAHRLEEA 475



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 73/178 (41%), Gaps = 2/178 (1%)

Query: 275 PGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNET-GAAM 333
           P   F  L F     G++    +  +  M G  G RP T +YN ++ +   S      A+
Sbjct: 136 PAAAFEALIFAHASAGRHHEAVD-AFSRMEGEFGCRPTTFVYNAVLRVLVASGGVVPLAL 194

Query: 334 KLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVY 393
            L + MV  G  P+  TYN+L + L K     +A  LF+EM++     N +     +   
Sbjct: 195 ALYNRMVAAGCLPNRATYNVLMDGLCKRGTAVDALKLFDEMLQRGITPNVKTHTILLSSM 254

Query: 394 MDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQV 451
            ++     A      M +  C     T N  ++GLC    + EA++  + +   G  V
Sbjct: 255 CNAGQLKEAENLLNSMEDKGCPPDEVTYNAFLSGLCKAGRVDEAIERLEALRRTGTFV 312


>gi|357499981|ref|XP_003620279.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495294|gb|AES76497.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 585

 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 75/318 (23%), Positives = 137/318 (43%), Gaps = 5/318 (1%)

Query: 150 RVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDT-YA 208
           ++  A    D +   G   D  +  +L+  +C+ G+T  A   L+ VDG++   N   Y 
Sbjct: 140 QIHQAFLFHDKLVALGFHLDQVSYGTLIHGLCKVGETRAALDLLQRVDGKLVQLNAVMYN 199

Query: 209 ILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRM 268
            ++ G  K++ V +A   + EMV + G  P NV  Y S LI+       + + ++   ++
Sbjct: 200 TVIYGMCKDKHVNDAFDLYSEMVSK-GISP-NVVTY-SALISGFFVVGKLKDAIDLFNKI 256

Query: 269 MERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNE 328
           +     P    F +  +     + ++  + ++ AM+ + G  PD   YN ++  YC   E
Sbjct: 257 ILENIKPDGYTFNILVDGFCKDRKMKEGKTVF-AMMMKQGIIPDVVTYNSLMDGYCLVKE 315

Query: 329 TGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRA 388
              A  + + M   G  PDI++YNIL     K +K+ +A  LFNEM     + N     +
Sbjct: 316 VNTAKSIFNTMAQGGVNPDIRSYNILINGFCKIKKVDKAMNLFNEMHCKNIIPNVVTYNS 375

Query: 389 AVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448
            +     S     A++    M +        T N ++  L   H + +A+       ++G
Sbjct: 376 LIDGLSKSGRISYALQLVDQMHDRGVPPNILTYNSIIDALFKTHQVDKAIALITKFKDQG 435

Query: 449 IQVTPFALSKLKQILIKA 466
           IQ + +  + L   L K 
Sbjct: 436 IQPSMYTYTILIDGLCKV 453



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 62/282 (21%), Positives = 115/282 (40%), Gaps = 21/282 (7%)

Query: 96  NDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDA 154
           N K   Y +N++VD   K+            M K+ ++  + T+ S+   Y +   V  A
Sbjct: 260 NIKPDGYTFNILVDGFCKDRKMKEGKTVFAMMMKQGIIPDVVTYNSLMDGYCLVKEVNTA 319

Query: 155 ITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEG 213
            + F+ M Q G   D+ + N L++  C+  K   A      +  + I P+  TY  L++G
Sbjct: 320 KSIFNTMAQGGVNPDIRSYNILINGFCKIKKVDKAMNLFNEMHCKNIIPNVVTYNSLIDG 379

Query: 214 WEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGC 273
             K   ++ A +   +M       P N+  Y+S +  L K    + + +  + +  ++G 
Sbjct: 380 LSKSGRISYALQLVDQM--HDRGVPPNILTYNSIIDALFK-THQVDKAIALITKFKDQGI 436

Query: 274 NPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAM 333
            P M  + +  +                 +    G+    + YN+MI  +C       A+
Sbjct: 437 QPSMYTYTILID----------------GLCKVEGYDITVNTYNVMIHGFCKKGLFDEAL 480

Query: 334 KLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
            LL +M  +   P+  TY I    L+   +  +A  LF EM+
Sbjct: 481 SLLSKMKDSSCIPNAVTYEITIRSLLDNNENDKAEKLFREMI 522


>gi|413937324|gb|AFW71875.1| hypothetical protein ZEAMMB73_225396 [Zea mays]
          Length = 818

 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 71/279 (25%), Positives = 122/279 (43%), Gaps = 16/279 (5%)

Query: 104 WNLVVD-LLGKNCLFDAM---WDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFD 159
           +N ++D L  ++C+ DAM    D      K +++   TF ++       DR +DA     
Sbjct: 534 YNCIIDGLCNESCIDDAMELLSDLQSCGCKPDIV---TFNTLLKGLCGVDRWEDAEQLMA 590

Query: 160 VMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV-DGRIKPDNDTYAILLEGWEKER 218
            M +  C  D    N++++++C+ G    A + L+++ +    P++ TY+I+++   K  
Sbjct: 591 NMMRSNCPPDELTFNTVITSLCQKGLLTQAIETLKIMAENGCVPNSSTYSIVVDALLKAG 650

Query: 219 DVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMT 278
               A +    M       PD +  Y++ +  L K    + E ++ L+ M+  G  P  T
Sbjct: 651 KAQAALELLSGMT---NGTPDLI-TYNTVISNLTKA-GKMEEALDLLRVMVSNGLCPDTT 705

Query: 279 FFK-LAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLD 337
            ++ LA+  C      R    +    V   G  PDT  YN ++  +C    T  A+    
Sbjct: 706 TYRSLAYGVCREDGTDRAVRMLR--RVQDTGLSPDTTFYNDVLLGFCRDRRTDLAIDCFA 763

Query: 338 EMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK 376
            MV +G  PD  TY IL E L  G  L EA  L   +  
Sbjct: 764 HMVSSGCMPDESTYVILLEALAYGGLLDEAKRLLASLCS 802



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 84/389 (21%), Positives = 153/389 (39%), Gaps = 58/389 (14%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           S+ T++ +  +       + A+   D M   GC+ D+   N L++A+C +G   +A   L
Sbjct: 285 SVVTYSILLDATCKESGYRQAMALLDEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNIL 344

Query: 194 RVVDGR-IKPDNDTYAILLE---GWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLI 249
             +     KPD  TY  +L+   G E+ ++V   ++   EM       PD V  +++ + 
Sbjct: 345 SNLPSHGCKPDAVTYTPVLKSLCGSERWKEV---EELLAEMTSN-NCAPDEV-TFNTIVT 399

Query: 250 TLLK-----------------GC-----------DGIYET------VNSLKRMMERGCNP 275
           +L +                 GC           DG+ +       V  L R+   GC P
Sbjct: 400 SLCQQGLVDRAIEVVDHMSEHGCVADIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKP 459

Query: 276 GMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKL 335
               +    +   + +    AE +   M+      PD   +N +++  C       A+++
Sbjct: 460 DTIAYTTVLKGLCSTEQWERAEELMAEMLCS-DCPPDEVTFNTVVASLCQKGLVDRAIRV 518

Query: 336 LDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMD 395
           +++M  NG  PDI TYN + + L     + +A  L ++       L    C+  +  +  
Sbjct: 519 VEQMSENGCSPDIVTYNCIIDGLCNESCIDDAMELLSD-------LQSCGCKPDIVTFNT 571

Query: 396 SDDPYVAIKFWK-------YMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448
                  +  W+        M+ ++C     T N ++  LC   +L +A++  K MAE G
Sbjct: 572 LLKGLCGVDRWEDAEQLMANMMRSNCPPDELTFNTVITSLCQKGLLTQAIETLKIMAENG 631

Query: 449 IQVTPFALSKLKQILIKARKEAVYEELLK 477
                   S +   L+KA K     ELL 
Sbjct: 632 CVPNSSTYSIVVDALLKAGKAQAALELLS 660



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 77/323 (23%), Positives = 132/323 (40%), Gaps = 22/323 (6%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-F 192
           ++ T+ ++ + Y  A R++DA    + M       D F  N L+ A+C  G+  DA   F
Sbjct: 218 TVVTYNTMVNGYCRAGRIEDARRLINGMPF---PPDTFTFNPLIRALCVRGRIPDALAVF 274

Query: 193 LRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
             ++     P   TY+ILL+   KE     A     EM  + G +PD V  Y+  LI  +
Sbjct: 275 DDMLHRGCSPSVVTYSILLDATCKESGYRQAMALLDEMRAK-GCEPDIV-TYN-VLINAM 331

Query: 253 KGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD 312
                + E +N L  +   GC P    +    +     +  +  E +   M       PD
Sbjct: 332 CNEGDVDEALNILSNLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELLAEMTSN-NCAPD 390

Query: 313 THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFN 372
              +N +++  C       A++++D M  +G   DI TY+ + + L    ++ +A  L +
Sbjct: 391 EVTFNTIVTSLCQQGLVDRAIEVVDHMSEHGCVADIVTYSSILDGLCDVGRVDDAVELLS 450

Query: 373 EMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFW----KYMIENHCSDLSE---TGNLLV 425
                   L    C+     Y        + + W    + M E  CSD      T N +V
Sbjct: 451 R-------LKSYGCKPDTIAYTTVLKGLCSTEQWERAEELMAEMLCSDCPPDEVTFNTVV 503

Query: 426 AGLCDMHMLPEAVKYAKGMAEKG 448
           A LC   ++  A++  + M+E G
Sbjct: 504 ASLCQKGLVDRAIRVVEQMSENG 526



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 78/350 (22%), Positives = 139/350 (39%), Gaps = 10/350 (2%)

Query: 104 WNLVVDLLGKNCLFDAMWDAIKSMKKEN-VLSLATFASVFSSYVVADRVKDAITTFDVME 162
           +N +V  L +  L D   + +  M +   V  + T++S+        RV DA+     ++
Sbjct: 394 FNTIVTSLCQQGLVDRAIEVVDHMSEHGCVADIVTYSSILDGLCDVGRVDDAVELLSRLK 453

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERDVA 221
            YGCK D  A  ++L  +C   +   A + +  ++     PD  T+  ++    ++  V 
Sbjct: 454 SYGCKPDTIAYTTVLKGLCSTEQWERAEELMAEMLCSDCPPDEVTFNTVVASLCQKGLVD 513

Query: 222 NAKKTFGEMVIEVGWDPDNVPAYDSYLITLL-KGCDGIYETVNSLKRMMERGCNPGMTFF 280
            A +   +M  E G  PD V  Y+  +  L  + C  I + +  L  +   GC P +  F
Sbjct: 514 RAIRVVEQMS-ENGCSPDIV-TYNCIIDGLCNESC--IDDAMELLSDLQSCGCKPDIVTF 569

Query: 281 KLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMV 340
               +          AE +   M+ R    PD   +N +I+  C       A++ L  M 
Sbjct: 570 NTLLKGLCGVDRWEDAEQLMANMM-RSNCPPDELTFNTVITSLCQKGLLTQAIETLKIMA 628

Query: 341 YNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPY 400
            NG  P+  TY+I+ + L+K  K   A  L + M      L   N    +     +    
Sbjct: 629 ENGCVPNSSTYSIVVDALLKAGKAQAALELLSGMTNGTPDLITYN--TVISNLTKAGKME 686

Query: 401 VAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQ 450
            A+   + M+ N     + T   L  G+C       AV+  + + + G+ 
Sbjct: 687 EALDLLRVMVSNGLCPDTTTYRSLAYGVCREDGTDRAVRMLRRVQDTGLS 736



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 77/316 (24%), Positives = 120/316 (37%), Gaps = 7/316 (2%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           TF  +  +  V  R+ DA+  FD M   GC   V   + LL A C++     A   L  +
Sbjct: 253 TFNPLIRALCVRGRIPDALAVFDDMLHRGCSPSVVTYSILLDATCKESGYRQAMALLDEM 312

Query: 197 DGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
             +  +PD  TY +L+     E DV  A      +    G  PD V  Y   L +L  G 
Sbjct: 313 RAKGCEPDIVTYNVLINAMCNEGDVDEALNILSNLPSH-GCKPDAV-TYTPVLKSLC-GS 369

Query: 256 DGIYETVNSLKRMMERGCNPG-MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTH 314
           +   E    L  M    C P  +TF  +    C  G   R  E +    +   G   D  
Sbjct: 370 ERWKEVEELLAEMTSNNCAPDEVTFNTIVTSLCQQGLVDRAIEVV--DHMSEHGCVADIV 427

Query: 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
            Y+ ++   C       A++LL  +   G  PD   Y  + + L    +   A  L  EM
Sbjct: 428 TYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSTEQWERAEELMAEM 487

Query: 375 VKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHML 434
           + ++   +       V           AI+  + M EN CS    T N ++ GLC+   +
Sbjct: 488 LCSDCPPDEVTFNTVVASLCQKGLVDRAIRVVEQMSENGCSPDIVTYNCIIDGLCNESCI 547

Query: 435 PEAVKYAKGMAEKGIQ 450
            +A++    +   G +
Sbjct: 548 DDAMELLSDLQSCGCK 563



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 76/352 (21%), Positives = 128/352 (36%), Gaps = 64/352 (18%)

Query: 142 FSSYVVADRVKDAITTFDVMEQYGCKH--DVFALNSLLSAICRDGKTIDAWQFLRVVDGR 199
             S V    + +A+  FD M   G ++   V   N L+  +C DG+  DA +        
Sbjct: 157 LRSLVQRGEIDEALVLFDSMASGGGRNCPPVVPCNILIKRLCSDGRVSDAERVF----AA 212

Query: 200 IKPDND--TYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDG 257
           + P     TY  ++ G+ +   + +A++    M     + PD                  
Sbjct: 213 LGPSATVVTYNTMVNGYCRAGRIEDARRLINGM----PFPPDT----------------- 251

Query: 258 IYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYN 317
                               TF  L    C+ G+ +  A  ++  M+ R G  P    Y+
Sbjct: 252 -------------------FTFNPLIRALCVRGR-IPDALAVFDDMLHR-GCSPSVVTYS 290

Query: 318 MMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKN 377
           +++   C  +    AM LLDEM   G  PDI TYN+L   +     + EA  + +     
Sbjct: 291 ILLDATCKESGYRQAMALLDEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNILS----- 345

Query: 378 ENVLNHENCRAAVRVYMDSDDPYVAIKFWK-------YMIENHCSDLSETGNLLVAGLCD 430
            N+ +H  C+     Y          + WK        M  N+C+    T N +V  LC 
Sbjct: 346 -NLPSH-GCKPDAVTYTPVLKSLCGSERWKEVEELLAEMTSNNCAPDEVTFNTIVTSLCQ 403

Query: 431 MHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKCKAH 482
             ++  A++    M+E G        S +   L    +     ELL + K++
Sbjct: 404 QGLVDRAIEVVDHMSEHGCVADIVTYSSILDGLCDVGRVDDAVELLSRLKSY 455



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 62/275 (22%), Positives = 106/275 (38%), Gaps = 38/275 (13%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           TF +V +S      V  AI   + M + GC  D+   N ++  +C +    DA + L  +
Sbjct: 498 TFNTVVASLCQKGLVDRAIRVVEQMSENGCSPDIVTYNCIIDGLCNESCIDDAMELLSDL 557

Query: 197 DG-RIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL-KG 254
                KPD  T+  LL+G        +A++    M +     PD +  +++ + +L  KG
Sbjct: 558 QSCGCKPDIVTFNTLLKGLCGVDRWEDAEQLMANM-MRSNCPPDEL-TFNTVITSLCQKG 615

Query: 255 CDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGA-EFIWGAMVG-------- 305
              + + + +LK M E GC P  + + +  +  L     + A E + G   G        
Sbjct: 616 L--LTQAIETLKIMAENGCVPNSSTYSIVVDALLKAGKAQAALELLSGMTNGTPDLITYN 673

Query: 306 -------------------RI----GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYN 342
                              R+    G  PDT  Y  +    C  + T  A+++L  +   
Sbjct: 674 TVISNLTKAGKMEEALDLLRVMVSNGLCPDTTTYRSLAYGVCREDGTDRAVRMLRRVQDT 733

Query: 343 GAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKN 377
           G  PD   YN +     + R+   A   F  MV +
Sbjct: 734 GLSPDTTFYNDVLLGFCRDRRTDLAIDCFAHMVSS 768


>gi|225434476|ref|XP_002278184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09060
           [Vitis vinifera]
          Length = 691

 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 82/381 (21%), Positives = 158/381 (41%), Gaps = 49/381 (12%)

Query: 90  WSAYQLNDKHSPYAWNLVVDLLGKNCLFD---AMWDAIKSMKKENVLSLATFASVFSSYV 146
           W   +     +  ++N+++  L +N   D   ++W+ +   +K+      T+  +     
Sbjct: 348 WKVMEKEGCRTVVSYNILIRGLFENAKVDEAISIWELLP--EKDCCADSMTYGVLVHGLC 405

Query: 147 VADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDND 205
               +  A++  +  E      D FA +S+++ +CR+G+  +    L ++     KP+  
Sbjct: 406 KNGYLNKALSILEEAENGRGDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPH 465

Query: 206 TYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSL 265
               ++ G+ +   + +A + FG MV + G  P  V  Y++ LI  L   +   E    +
Sbjct: 466 VCNAVINGFVRASKLEDALRFFGNMVSK-GCFP-TVVTYNT-LINGLSKAERFSEAYALV 522

Query: 266 KRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCY 325
           K M+ +G  P M  + L       G+ L  A  +W   + + GF+PD  M+N++I   C 
Sbjct: 523 KEMLHKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQALEK-GFKPDVKMHNIIIHGLCS 581

Query: 326 SNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHEN 385
           S +   A++L  EM      P++ T+N L E   K R    AS                 
Sbjct: 582 SGKVEDALQLYSEMKQRKCVPNLVTHNTLMEGFYKVRDFERAS----------------- 624

Query: 386 CRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMA 445
                             K W ++++        + N+ + GLC  H + +AV +     
Sbjct: 625 ------------------KIWDHILQYGPQPDIISYNITLKGLCSCHRISDAVGFLNDAV 666

Query: 446 EKGIQVTPFALSKLKQILIKA 466
           ++G  V P A++    IL++A
Sbjct: 667 DRG--VLPTAIT--WNILVRA 683



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 72/349 (20%), Positives = 143/349 (40%), Gaps = 11/349 (3%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKK-ENVLSLATFASVFSSYVVADRVKDAITTFDVM 161
           ++N++++ L K   FD  ++    MKK E    L T++++      +  +  A   +  M
Sbjct: 257 SYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEM 316

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVA 221
            + G   DV   N++L+   R G+  +  +  +V++        +Y IL+ G        
Sbjct: 317 AENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGCRTVVSYNILIRGL-----FE 371

Query: 222 NAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFK 281
           NAK      + E+  + D      +Y + +   C   Y  +N    ++E   N       
Sbjct: 372 NAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGY--LNKALSILEEAENGRGDLDT 429

Query: 282 LAFEECLTGQNLRG-AEFIWGAM--VGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDE 338
            A+   + G    G  + + G +  + + G +P+ H+ N +I+ +  +++   A++    
Sbjct: 430 FAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKLEDALRFFGN 489

Query: 339 MVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDD 398
           MV  G FP + TYN L   L K  +  EA  L  EM+      N       +        
Sbjct: 490 MVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLHKGWKPNMITYSLLMNGLCQGKK 549

Query: 399 PYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEK 447
             +A+  W   +E       +  N+++ GLC    + +A++    M ++
Sbjct: 550 LDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQR 598



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 78/369 (21%), Positives = 141/369 (38%), Gaps = 42/369 (11%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDA---WQFL 193
           ++ ++ +S      + DA+  FD M + G   DV   N L+    + G  ++A   W+ L
Sbjct: 186 SYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGDILNASEIWERL 245

Query: 194 R--------------VVDGRIK--------------------PDNDTYAILLEGWEKERD 219
                          +++G  K                     D  TY+ L+ G     +
Sbjct: 246 LKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGN 305

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTF 279
           +  A + + EM  E G  PD V  Y++ L   L+    I E +   K M + GC   ++ 
Sbjct: 306 LDGATRVYKEMA-ENGVSPD-VVVYNTMLNGYLRA-GRIEECLELWKVMEKEGCRTVVS- 361

Query: 280 FKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEM 339
           + +          +  A  IW  ++       D+  Y +++   C +     A+ +L+E 
Sbjct: 362 YNILIRGLFENAKVDEAISIW-ELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEA 420

Query: 340 VYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDP 399
                  D   Y+ +   L +  +L E +G+ ++M K+    N   C A +  ++ +   
Sbjct: 421 ENGRGDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKL 480

Query: 400 YVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKL 459
             A++F+  M+   C     T N L+ GL       EA    K M  KG +      S L
Sbjct: 481 EDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLHKGWKPNMITYSLL 540

Query: 460 KQILIKARK 468
              L + +K
Sbjct: 541 MNGLCQGKK 549



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 61/144 (42%), Gaps = 1/144 (0%)

Query: 308 GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEA 367
           GF PD   Y  +I+    +     A+KL DEM   G  PD+  YNIL +   K   +  A
Sbjct: 179 GFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGDILNA 238

Query: 368 SGLFNEMVKNENVL-NHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVA 426
           S ++  ++K  +V  N  +    +           + + W  M +N       T + L+ 
Sbjct: 239 SEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIH 298

Query: 427 GLCDMHMLPEAVKYAKGMAEKGIQ 450
           GLC    L  A +  K MAE G+ 
Sbjct: 299 GLCGSGNLDGATRVYKEMAENGVS 322


>gi|449443698|ref|XP_004139614.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Cucumis sativus]
          Length = 732

 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 79/333 (23%), Positives = 130/333 (39%), Gaps = 8/333 (2%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           TF  V       +++ DA    D M   G   D      LL  +CR GK  +A + L  +
Sbjct: 290 TFNDVIHGLCKVNKIHDATKLVDRMLLRGFYPDNMTYGFLLHGLCRIGKLNEARKILIKI 349

Query: 197 DGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD 256
                P+N     L+ G+     +  A+    E +I  G+ PD +  Y+  +  L K  +
Sbjct: 350 PC---PNNAILNTLINGYVMSGQLKEAQSFLNETMINFGFQPD-IFTYNILMHGLCK--E 403

Query: 257 GIYETVNSL-KRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHM 315
           G       L   M  RGC P +  + +          L  A  +   M  R G   ++ +
Sbjct: 404 GSLSFARDLVNEMSRRGCEPNVITYAILVNGLCKAGLLEEAGLVLHEMSAR-GLTINSVI 462

Query: 316 YNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
           YN +I   C   +   A+ LL EM   G  PD+ TYN L   L K  ++ EA  LF+ M+
Sbjct: 463 YNCLICALCRKEKVHVALNLLSEMCTKGCKPDLFTYNSLIYGLCKVDRIDEAFRLFHNML 522

Query: 376 KNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLP 435
            +  V N+      +   +       A+     M+   C+    T N L+   C +  + 
Sbjct: 523 LDGAVANNVTYNTLIHALLRRGAFQKALTLVNDMLFRGCTLDKITYNGLIKAFCKVGNIE 582

Query: 436 EAVKYAKGMAEKGIQVTPFALSKLKQILIKARK 468
           + ++  + M   G+     + + +   L K  K
Sbjct: 583 KGLELYEQMIMDGLGADTISCNIMINGLCKVGK 615



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 94/418 (22%), Positives = 168/418 (40%), Gaps = 48/418 (11%)

Query: 57  VLDKTLIRVSQETV---EQVLKFSYSH------PGPAVKFFRWSAYQLNDKHSPY----- 102
           ++DK L+++ +E +   E +      H      PG A++        L D  + Y     
Sbjct: 130 LIDKLLMQMKEEGIVFRESIFMIIMKHYGKAGQPGQAIRL-------LLDMRAVYLCEPT 182

Query: 103 --AWNLVVDLL--------GKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVK 152
             +++LV+++L          N  +D +   +         ++ TF  V  +  + + V 
Sbjct: 183 FKSYDLVLEILVTGNCPQVATNVFYDMLSKGVSP-------TVFTFGIVMKALCMFNEVD 235

Query: 153 DAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR--VVDGRIKPDNDTYAIL 210
            A +    M ++GC  +     +L+ A+ +  +  +A + L    V G + PD  T+  +
Sbjct: 236 SACSLLRDMTKHGCVPNSIVYQTLIHALSQKNQVSEALKLLEEMFVMGCM-PDVQTFNDV 294

Query: 211 LEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMME 270
           + G  K   + +A K    M++  G+ PDN+  Y      LL G   I +   + K +++
Sbjct: 295 IHGLCKVNKIHDATKLVDRMLLR-GFYPDNM-TYG----FLLHGLCRIGKLNEARKILIK 348

Query: 271 RGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETG 330
             C        L     ++GQ      F+   M+   GF+PD   YN+++   C      
Sbjct: 349 IPCPNNAILNTLINGYVMSGQLKEAQSFLNETMI-NFGFQPDIFTYNILMHGLCKEGSLS 407

Query: 331 AAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAV 390
            A  L++EM   G  P++ TY IL   L K   L EA  + +EM      +N       +
Sbjct: 408 FARDLVNEMSRRGCEPNVITYAILVNGLCKAGLLEEAGLVLHEMSARGLTINSVIYNCLI 467

Query: 391 RVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448
                 +  +VA+     M    C     T N L+ GLC +  + EA +    M   G
Sbjct: 468 CALCRKEKVHVALNLLSEMCTKGCKPDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDG 525



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 70/341 (20%), Positives = 140/341 (41%), Gaps = 41/341 (12%)

Query: 110 LLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTF-DVMEQYGCKH 168
           LL   C    + +A K + K    + A   ++ + YV++ ++K+A +   + M  +G + 
Sbjct: 329 LLHGLCRIGKLNEARKILIKIPCPNNAILNTLINGYVMSGQLKEAQSFLNETMINFGFQP 388

Query: 169 DVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTF 227
           D+F  N L+  +C++G    A   +  +  R  +P+  TYAIL+ G  K   +  A    
Sbjct: 389 DIFTYNILMHGLCKEGSLSFARDLVNEMSRRGCEPNVITYAILVNGLCKAGLLEEAGLVL 448

Query: 228 GEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEEC 287
            EM    G   ++V  Y+  +  L +  + ++  +N L  M  +GC              
Sbjct: 449 HEMSAR-GLTINSV-IYNCLICALCRK-EKVHVALNLLSEMCTKGC-------------- 491

Query: 288 LTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPD 347
                                 +PD   YN +I   C  +    A +L   M+ +GA  +
Sbjct: 492 ----------------------KPDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDGAVAN 529

Query: 348 IQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWK 407
             TYN L   L++     +A  L N+M+     L+       ++ +    +    ++ ++
Sbjct: 530 NVTYNTLIHALLRRGAFQKALTLVNDMLFRGCTLDKITYNGLIKAFCKVGNIEKGLELYE 589

Query: 408 YMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448
            MI +     + + N+++ GLC +  +  A ++ +    +G
Sbjct: 590 QMIMDGLGADTISCNIMINGLCKVGKVDNAFEFLRDAINRG 630



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 70/277 (25%), Positives = 121/277 (43%), Gaps = 10/277 (3%)

Query: 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDV 160
           + +N+++  L K        D +  M +     ++ T+A + +    A  +++A      
Sbjct: 391 FTYNILMHGLCKEGSLSFARDLVNEMSRRGCEPNVITYAILVNGLCKAGLLEEAGLVLHE 450

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERD 219
           M   G   +    N L+ A+CR  K   A   L  +     KPD  TY  L+ G  K   
Sbjct: 451 MSARGLTINSVIYNCLICALCRKEKVHVALNLLSEMCTKGCKPDLFTYNSLIYGLCKVDR 510

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSL-KRMMERGCN-PGM 277
           +  A + F  M+++ G   +NV  Y++ +  LL+   G ++   +L   M+ RGC    +
Sbjct: 511 IDEAFRLFHNMLLD-GAVANNV-TYNTLIHALLR--RGAFQKALTLVNDMLFRGCTLDKI 566

Query: 278 TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLD 337
           T+  L    C  G   +G E     ++  +G   DT   N+MI+  C   +   A + L 
Sbjct: 567 TYNGLIKAFCKVGNIEKGLELYEQMIMDGLG--ADTISCNIMINGLCKVGKVDNAFEFLR 624

Query: 338 EMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
           + +  G  PDI TYN +   L K  ++ EA  LF+ +
Sbjct: 625 DAINRGFVPDIVTYNSVLNGLCKVGRIKEALNLFDRL 661



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 55/232 (23%), Positives = 95/232 (40%), Gaps = 9/232 (3%)

Query: 149 DRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR--VVDGRIKPDNDT 206
           ++V  A+     M   GCK D+F  NSL+  +C+  +  +A++     ++DG +  +N T
Sbjct: 474 EKVHVALNLLSEMCTKGCKPDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDGAV-ANNVT 532

Query: 207 YAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLK 266
           Y  L+    +      A     +M+   G   D +  Y+  LI        I + +   +
Sbjct: 533 YNTLIHALLRRGAFQKALTLVNDMLFR-GCTLDKI-TYNG-LIKAFCKVGNIEKGLELYE 589

Query: 267 RMMERGCNPGMTFFKLAFEE-CLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCY 325
           +M+  G         +     C  G+     EF+  A + R GF PD   YN +++  C 
Sbjct: 590 QMIMDGLGADTISCNIMINGLCKVGKVDNAFEFLRDA-INR-GFVPDIVTYNSVLNGLCK 647

Query: 326 SNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKN 377
                 A+ L D +   G  PD  TYN    +  K   + +A   F   ++N
Sbjct: 648 VGRIKEALNLFDRLQVEGVRPDAFTYNTFISWQCKEGMVNDACLFFYRGIEN 699



 Score = 48.1 bits (113), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 53/107 (49%), Gaps = 4/107 (3%)

Query: 117 FDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSL 176
           F+ + DAI    +  V  + T+ SV +      R+K+A+  FD ++  G + D F  N+ 
Sbjct: 620 FEFLRDAIN---RGFVPDIVTYNSVLNGLCKVGRIKEALNLFDRLQVEGVRPDAFTYNTF 676

Query: 177 LSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERDVAN 222
           +S  C++G   DA  F  R ++    P N T+ +L+    K+ +  N
Sbjct: 677 ISWQCKEGMVNDACLFFYRGIENGFVPSNLTWNVLVYTLLKQSNQEN 723



 Score = 45.4 bits (106), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 81/204 (39%), Gaps = 8/204 (3%)

Query: 265 LKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYC 324
           L+ M + GC P    ++      L+ +N           +  +G  PD   +N +I   C
Sbjct: 241 LRDMTKHGCVPNSIVYQ-TLIHALSQKNQVSEALKLLEEMFVMGCMPDVQTFNDVIHGLC 299

Query: 325 YSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM-VKNENVLNH 383
             N+   A KL+D M+  G +PD  TY  L   L +  KL EA  +  ++   N  +LN 
Sbjct: 300 KVNKIHDATKLVDRMLLRGFYPDNMTYGFLLHGLCRIGKLNEARKILIKIPCPNNAILN- 358

Query: 384 ENCRAAVRVYMDSDDPYVAIKFW-KYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAK 442
                 +  Y+ S     A  F  + MI         T N+L+ GLC    L  A     
Sbjct: 359 ----TLINGYVMSGQLKEAQSFLNETMINFGFQPDIFTYNILMHGLCKEGSLSFARDLVN 414

Query: 443 GMAEKGIQVTPFALSKLKQILIKA 466
            M+ +G +      + L   L KA
Sbjct: 415 EMSRRGCEPNVITYAILVNGLCKA 438



 Score = 45.1 bits (105), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 60/273 (21%), Positives = 103/273 (37%), Gaps = 15/273 (5%)

Query: 99  HSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLS----------LATFASVFSSYVVA 148
           H   A  L ++ +  NCL  A+    K     N+LS          L T+ S+       
Sbjct: 449 HEMSARGLTINSVIYNCLICALCRKEKVHVALNLLSEMCTKGCKPDLFTYNSLIYGLCKV 508

Query: 149 DRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTY 207
           DR+ +A   F  M   G   +    N+L+ A+ R G    A   +  +  R    D  TY
Sbjct: 509 DRIDEAFRLFHNMLLDGAVANNVTYNTLIHALLRRGAFQKALTLVNDMLFRGCTLDKITY 568

Query: 208 AILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKR 267
             L++ + K  ++    + + +M+++ G   D +    + +I  L     +      L+ 
Sbjct: 569 NGLIKAFCKVGNIEKGLELYEQMIMD-GLGADTISC--NIMINGLCKVGKVDNAFEFLRD 625

Query: 268 MMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSN 327
            + RG  P +  +            ++ A  ++  +    G RPD   YN  IS  C   
Sbjct: 626 AINRGFVPDIVTYNSVLNGLCKVGRIKEALNLFDRLQVE-GVRPDAFTYNTFISWQCKEG 684

Query: 328 ETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVK 360
               A       + NG  P   T+N+L   L+K
Sbjct: 685 MVNDACLFFYRGIENGFVPSNLTWNVLVYTLLK 717


>gi|356529465|ref|XP_003533312.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 546

 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 83/358 (23%), Positives = 152/358 (42%), Gaps = 29/358 (8%)

Query: 136 ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRV 195
            T  ++     +  +VK A+   D +   G + +  +  +L++ +C+ G T  A +FLR 
Sbjct: 130 VTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCKIGDTRAAIKFLRK 189

Query: 196 VDGRI-KPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG 254
           +DGR+ KPD   Y  +++   K + V+ A   F EM ++ G   D V  Y+    TL+ G
Sbjct: 190 IDGRLTKPDVVMYNTIIDAMCKYQLVSEAYGLFSEMAVK-GISAD-VVTYN----TLIYG 243

Query: 255 ---CDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRP 311
                 + E +  L  M+ +  NP +  + +  +       ++ A+ +   M+ +   +P
Sbjct: 244 FCIVGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVML-KACVKP 302

Query: 312 DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLF 371
           D   Y+ ++  Y    E   A  + + M   G  PD+ TY IL     K + + EA  LF
Sbjct: 303 DVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLF 362

Query: 372 NEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYM--IENHCSDLSETGNL-----L 424
            EM       + +N    +  Y    D         Y+  + +   D  +  ++     L
Sbjct: 363 KEM-------HQKNMVPGIVTYSSLIDGLCKSGRISYVWDLIDEMRDRGQPADVITYSSL 415

Query: 425 VAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARK----EAVYEELLKK 478
           + GLC    L  A+     M ++ I+   F  + L   L K  +    + V+++LL K
Sbjct: 416 IDGLCKNGHLDRAIALFNKMKDQEIRPNIFTFTILLDGLCKGGRLKDAQEVFQDLLTK 473



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 92/415 (22%), Positives = 159/415 (38%), Gaps = 72/415 (17%)

Query: 84  AVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLS-LATFASVF 142
           A+KF R    +L  K     +N ++D + K  L    +     M  + + + + T+ ++ 
Sbjct: 183 AIKFLRKIDGRLT-KPDVVMYNTIIDAMCKYQLVSEAYGLFSEMAVKGISADVVTYNTLI 241

Query: 143 SSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRV-VDGRIK 201
             + +  ++K+AI   + M       +V+  N L+ A+C++GK  +A   L V +   +K
Sbjct: 242 YGFCIVGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVK 301

Query: 202 PDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDG--IY 259
           PD  TY+ L++G+    +V  A+  F  M + +G  PD      +Y I +   C    + 
Sbjct: 302 PDVITYSTLMDGYFLVYEVKKAQHVFNAMSL-MGVTPD----VHTYTILINGFCKNKMVD 356

Query: 260 ETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMM 319
           E +N  K M ++   PG+                                      Y+ +
Sbjct: 357 EALNLFKEMHQKNMVPGIV------------------------------------TYSSL 380

Query: 320 ISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNE- 378
           I   C S        L+DEM   G   D+ TY+ L + L K   L  A  LFN+M   E 
Sbjct: 381 IDGLCKSGRISYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQEI 440

Query: 379 -------NVLNHENCRA-----AVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVA 426
                   +L    C+      A  V+ D       +  + Y             N+++ 
Sbjct: 441 RPNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTY-------------NVMIN 487

Query: 427 GLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKCKA 481
           G C   +L EA+     M + G     F    +   L K  +    E+LL++  A
Sbjct: 488 GHCKQGLLEEALTMLSKMEDNGCIPNAFTFETIIIALFKKDENDKAEKLLRQMIA 542



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 75/323 (23%), Positives = 131/323 (40%), Gaps = 25/323 (7%)

Query: 138 FASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVV 196
           F  +  S+        A++    +E  G + D+  LN L++  C  G+    +  L +++
Sbjct: 62  FNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNILINCFCHMGQITFGFSVLAKIL 121

Query: 197 DGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD 256
                PD  T   L++G   +  V  A   F + ++  G+  + V    SY  TL+ G  
Sbjct: 122 KRGYPPDTVTLNTLIKGLCLKGQVKKALH-FHDKLLAQGFQLNQV----SY-ATLINGVC 175

Query: 257 GIYET---VNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDT 313
            I +T   +  L+++  R   P +  +    +     Q +  A  ++  M  + G   D 
Sbjct: 176 KIGDTRAAIKFLRKIDGRLTKPDVVMYNTIIDAMCKYQLVSEAYGLFSEMAVK-GISADV 234

Query: 314 HMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNE 373
             YN +I  +C   +   A+ LL+EMV     P++ TYNIL + L K  K+ EA  +   
Sbjct: 235 VTYNTLIYGFCIVGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAV 294

Query: 374 MVKNENVLNHENCRAAVRVYMDSDDPYVAI-------KFWKYMIENHCSDLSETGNLLVA 426
           M+K          +  V  Y    D Y  +         +  M     +    T  +L+ 
Sbjct: 295 MLK-------ACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILIN 347

Query: 427 GLCDMHMLPEAVKYAKGMAEKGI 449
           G C   M+ EA+   K M +K +
Sbjct: 348 GFCKNKMVDEALNLFKEMHQKNM 370


>gi|224107129|ref|XP_002314384.1| predicted protein [Populus trichocarpa]
 gi|222863424|gb|EEF00555.1| predicted protein [Populus trichocarpa]
          Length = 764

 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 87/350 (24%), Positives = 142/350 (40%), Gaps = 59/350 (16%)

Query: 82  GPAVKFFRWSAYQLNDKH-------SPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLS 134
           G A KF    AY L ++        S  A+N ++  LGK    D      + MK++ + +
Sbjct: 212 GSAGKF--DEAYSLLERQRAKGCIPSVVAYNCILTCLGKKGKTDKALRIFEEMKRDAMPN 269

Query: 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR 194
           L T+  +      A  V+ A    D M++ G   +V  +N ++  +C+  K  +A     
Sbjct: 270 LPTYNIIIGMLCKAGNVEAAFKVRDAMKEAGLFPNVRTINIMIDRLCKAQKLDEACSIFE 329

Query: 195 VVDGRI-KPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVP---AYDSYLIT 250
            +D ++  PD  T+  L++G  K+  V +A + +  M+     D D +P    Y S +  
Sbjct: 330 GMDYKVCSPDGATFCSLIDGLGKQGRVDDAYRIYERML-----DADQIPNVVVYTSLIRN 384

Query: 251 LLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECL--TGQNLRGAEFIWGAMVGRIG 308
             K CD   +     K MM  GC+P +      + +C+   G+  +G   ++  +  R G
Sbjct: 385 FFK-CDRKEDGHKMYKEMMRSGCSPDLMLLN-TYMDCVFKAGETEKG-RALFEEIKAR-G 440

Query: 309 FRP-----------------------------------DTHMYNMMISLYCYSNETGAAM 333
           F P                                   DT  YN +I  +C S +   A 
Sbjct: 441 FLPDTRSYSILIHSLVKAGFARETYELYYAMKDQGCVLDTRAYNTVIDGFCKSGKVNKAY 500

Query: 334 KLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNH 383
           +LL+EM   G  P + TY  + + L K  +L EA  LF E   N   LN 
Sbjct: 501 QLLEEMKTMGHHPTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSNGIELNQ 550



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 72/265 (27%), Positives = 117/265 (44%), Gaps = 24/265 (9%)

Query: 119 AMWDAIKSMKKE-NVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLL 177
           A+++ ++ +  E NV  L T   VFS      RV  A++  D M+      D+   N  +
Sbjct: 82  ALFNQMQELGYEVNVHLLTTLIRVFSR---EGRVDAALSLLDEMKSNTFDADIVLYNVCI 138

Query: 178 SAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGW 236
               + GK   AW+F   +    + PD+ TY  ++    K   +  A + F +M      
Sbjct: 139 DCFGKVGKVDMAWKFFHEMKANGLVPDDVTYTSMMGVLCKANRLDEAVEIFEQM-----E 193

Query: 237 DPDNVP-AYDSYLITLLKGCDGIYETVNSL-KRMMERGCNPGMTFFKLAFEECL-----T 289
               VP AY    + +  G  G ++   SL +R   +GC P +  +      CL     T
Sbjct: 194 QNRQVPCAYAYNTMIMGYGSAGKFDEAYSLLERQRAKGCIPSVVAYNCILT-CLGKKGKT 252

Query: 290 GQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQ 349
            + LR    I+  M  +    P+   YN++I + C +    AA K+ D M   G FP+++
Sbjct: 253 DKALR----IFEEM--KRDAMPNLPTYNIIIGMLCKAGNVEAAFKVRDAMKEAGLFPNVR 306

Query: 350 TYNILFEFLVKGRKLWEASGLFNEM 374
           T NI+ + L K +KL EA  +F  M
Sbjct: 307 TINIMIDRLCKAQKLDEACSIFEGM 331



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 65/273 (23%), Positives = 103/273 (37%), Gaps = 40/273 (14%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-- 194
           +++ +  S V A   ++    +  M+  GC  D  A N+++   C+ GK   A+Q L   
Sbjct: 447 SYSILIHSLVKAGFARETYELYYAMKDQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEM 506

Query: 195 --------------VVDGRIKPD--------------------NDTYAILLEGWEKERDV 220
                         VVDG  K D                       Y+ L++G+ K   V
Sbjct: 507 KTMGHHPTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSNGIELNQVIYSSLIDGFGKVGRV 566

Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFF 280
             A     EM ++ G  P NV  ++  L  L+K  + I E +   + M +  C P    +
Sbjct: 567 DEAYLVMEEM-MQKGLTP-NVYTWNCLLDGLVKA-EEINEALVCFQSMKDLKCTPNQITY 623

Query: 281 KLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMV 340
            +        +    A   W  M  + G +P+T  Y  MIS    S     A  L +   
Sbjct: 624 CILINGLCKVRKFNKAFVFWQEM-QKQGLKPNTITYTAMISGLAKSGNVAQASSLFERFR 682

Query: 341 YNGAFPDIQTYNILFEFLVKGRKLWEASGLFNE 373
            +G  PD  +YN + E L    +  +A  LF E
Sbjct: 683 ASGGIPDSASYNAMIEGLSIANRALDAYQLFEE 715



 Score = 43.1 bits (100), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 57/271 (21%), Positives = 109/271 (40%), Gaps = 12/271 (4%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKK-ENVLSLATFASVFSSYVVADRVKDAITTFDVM 161
           A+N V+D   K+   +  +  ++ MK   +  ++ T+ SV       DR+ +A   F+  
Sbjct: 482 AYNTVIDGFCKSGKVNKAYQLLEEMKTMGHHPTVVTYGSVVDGLAKIDRLDEAYMLFEEA 541

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYAILLEGWEKERDV 220
           +  G + +    +SL+    + G+  +A+  +  ++   + P+  T+  LL+G  K  ++
Sbjct: 542 KSNGIELNQVIYSSLIDGFGKVGRVDEAYLVMEEMMQKGLTPNVYTWNCLLDGLVKAEEI 601

Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSL---KRMMERGCNPGM 277
             A   F  M      D    P   +Y I L+ G   + +   +    + M ++G  P  
Sbjct: 602 NEALVCFQSM-----KDLKCTPNQITYCI-LINGLCKVRKFNKAFVFWQEMQKQGLKPNT 655

Query: 278 TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLD 337
             +           N+  A  ++       G  PD+  YN MI     +N    A +L +
Sbjct: 656 ITYTAMISGLAKSGNVAQASSLFERFRASGGI-PDSASYNAMIEGLSIANRALDAYQLFE 714

Query: 338 EMVYNGAFPDIQTYNILFEFLVKGRKLWEAS 368
           E    G     +T   L + L K   L +A+
Sbjct: 715 ETRLKGCSIHTKTCVALLDALHKAECLEQAA 745



 Score = 42.4 bits (98), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 71/309 (22%), Positives = 112/309 (36%), Gaps = 44/309 (14%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RV 195
           T     S    +DR+   +  F+ M++ G + +V  L +L+    R+G+   A   L  +
Sbjct: 66  TLIGALSEVGESDRM---LALFNQMQELGYEVNVHLLTTLIRVFSREGRVDAALSLLDEM 122

Query: 196 VDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
                  D   Y + ++ + K   V  A K F EM    G  PD+V  Y S +  L K  
Sbjct: 123 KSNTFDADIVLYNVCIDCFGKVGKVDMAWKFFHEMKAN-GLVPDDV-TYTSMMGVLCKA- 179

Query: 256 DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHM 315
                  N L   +E             FE+    + +                 P  + 
Sbjct: 180 -------NRLDEAVE------------IFEQMEQNRQV-----------------PCAYA 203

Query: 316 YNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
           YN MI  Y  + +   A  LL+     G  P +  YN +   L K  K  +A  +F EM 
Sbjct: 204 YNTMIMGYGSAGKFDEAYSLLERQRAKGCIPSVVAYNCILTCLGKKGKTDKALRIFEEM- 262

Query: 376 KNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLP 435
           K + + N       + +   + +   A K    M E        T N+++  LC    L 
Sbjct: 263 KRDAMPNLPTYNIIIGMLCKAGNVEAAFKVRDAMKEAGLFPNVRTINIMIDRLCKAQKLD 322

Query: 436 EAVKYAKGM 444
           EA    +GM
Sbjct: 323 EACSIFEGM 331



 Score = 38.9 bits (89), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 33/142 (23%), Positives = 59/142 (41%)

Query: 307 IGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWE 366
           +G+  + H+   +I ++       AA+ LLDEM  N    DI  YN+  +   K  K+  
Sbjct: 90  LGYEVNVHLLTTLIRVFSREGRVDAALSLLDEMKSNTFDADIVLYNVCIDCFGKVGKVDM 149

Query: 367 ASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVA 426
           A   F+EM  N  V +     + + V   ++    A++ ++ M +N     +   N ++ 
Sbjct: 150 AWKFFHEMKANGLVPDDVTYTSMMGVLCKANRLDEAVEIFEQMEQNRQVPCAYAYNTMIM 209

Query: 427 GLCDMHMLPEAVKYAKGMAEKG 448
           G        EA    +    KG
Sbjct: 210 GYGSAGKFDEAYSLLERQRAKG 231


>gi|302767746|ref|XP_002967293.1| hypothetical protein SELMODRAFT_87828 [Selaginella moellendorffii]
 gi|300165284|gb|EFJ31892.1| hypothetical protein SELMODRAFT_87828 [Selaginella moellendorffii]
          Length = 321

 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 68/283 (24%), Positives = 119/283 (42%), Gaps = 38/283 (13%)

Query: 128 KKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTI 187
           +K  + ++ TF  +      A+R+ DA    +VM + GC  +    N ++ A+C++G++ 
Sbjct: 3   EKGCIPTVVTFGILVDGLCKANRLTDAFELVEVMGERGCFPNALVFNGIMDALCKEGRSA 62

Query: 188 DAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDS 246
           +A+ F+  +    + P   TY +L++G+ KE  +  A +   EM    G +P++V  Y++
Sbjct: 63  EAYGFIETMRSMGVSPTIVTYNLLIDGFCKEEKLHRALEILQEMTGR-GHEPNHV-TYNT 120

Query: 247 YL-------------------------------ITLLKG-CDG--IYETVNSLKRMMERG 272
           +L                                TL+ G C    + E  + L  M   G
Sbjct: 121 FLHGLCKYGKVDDALALFRAMTEKKIRLDVYGYTTLIDGLCQAGKLAEAYSLLDEMENSG 180

Query: 273 CNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAA 332
           C P    +         G  +  A  ++  M G  G  PD   + MM+  YC  +    A
Sbjct: 181 CVPKPGCYNAILSWLCKGSRINEAHKLFKRMTGS-GILPDWLTFGMMVFGYCRGHRIDDA 239

Query: 333 MKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
           + LL +M   G  P    YN L + L +  ++ EA  L  EM+
Sbjct: 240 LLLLQQMKSAGLAPREVIYNTLIDALNRAGRVSEAYRLLQEMI 282



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 63/257 (24%), Positives = 108/257 (42%), Gaps = 14/257 (5%)

Query: 104 WNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVME 162
           +N ++D L K       +  I++M+   V  ++ T+  +   +   +++  A+     M 
Sbjct: 48  FNGIMDALCKEGRSAEAYGFIETMRSMGVSPTIVTYNLLIDGFCKEEKLHRALEILQEMT 107

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYAILLEGWEKERDVA 221
             G + +    N+ L  +C+ GK  DA    R + + +I+ D   Y  L++G  +   +A
Sbjct: 108 GRGHEPNHVTYNTFLHGLCKYGKVDDALALFRAMTEKKIRLDVYGYTTLIDGLCQAGKLA 167

Query: 222 NAKKTFGEMVIEVGWDPDNVP---AYDSYLITLLKGCDGIYETVNSLKRMMERGCNPG-M 277
            A     EM      +   VP    Y++ L  L KG   I E     KRM   G  P  +
Sbjct: 168 EAYSLLDEM-----ENSGCVPKPGCYNAILSWLCKG-SRINEAHKLFKRMTGSGILPDWL 221

Query: 278 TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLD 337
           TF  + F  C  G  +  A  +   M    G  P   +YN +I     +     A +LL 
Sbjct: 222 TFGMMVFGYC-RGHRIDDALLLLQQMKS-AGLAPREVIYNTLIDALNRAGRVSEAYRLLQ 279

Query: 338 EMVYNGAFPDIQTYNIL 354
           EM+  G  P+ +TY ++
Sbjct: 280 EMISRGLSPNSRTYALM 296



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 72/183 (39%), Gaps = 3/183 (1%)

Query: 268 MMERGCNPGMTFFKLAFEE-CLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYS 326
           M ERGC P    F    +  C  G++     FI    +  +G  P    YN++I  +C  
Sbjct: 36  MGERGCFPNALVFNGIMDALCKEGRSAEAYGFI--ETMRSMGVSPTIVTYNLLIDGFCKE 93

Query: 327 NETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENC 386
            +   A+++L EM   G  P+  TYN     L K  K+ +A  LF  M + +  L+    
Sbjct: 94  EKLHRALEILQEMTGRGHEPNHVTYNTFLHGLCKYGKVDDALALFRAMTEKKIRLDVYGY 153

Query: 387 RAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAE 446
              +     +     A      M  + C       N +++ LC    + EA K  K M  
Sbjct: 154 TTLIDGLCQAGKLAEAYSLLDEMENSGCVPKPGCYNAILSWLCKGSRINEAHKLFKRMTG 213

Query: 447 KGI 449
            GI
Sbjct: 214 SGI 216



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 51/214 (23%), Positives = 79/214 (36%), Gaps = 7/214 (3%)

Query: 268 MMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSN 327
           M E+GC P +  F +  +       L  A F    ++G  G  P+  ++N ++   C   
Sbjct: 1   MAEKGCIPTVVTFGILVDGLCKANRLTDA-FELVEVMGERGCFPNALVFNGIMDALCKEG 59

Query: 328 ETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCR 387
            +  A   ++ M   G  P I TYN+L +   K  KL  A  +  EM    +  NH    
Sbjct: 60  RSAEAYGFIETMRSMGVSPTIVTYNLLIDGFCKEEKLHRALEILQEMTGRGHEPNHVTYN 119

Query: 388 A---AVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGM 444
                +  Y   DD   A+  ++ M E            L+ GLC    L EA      M
Sbjct: 120 TFLHGLCKYGKVDD---ALALFRAMTEKKIRLDVYGYTTLIDGLCQAGKLAEAYSLLDEM 176

Query: 445 AEKGIQVTPFALSKLKQILIKARKEAVYEELLKK 478
              G    P   + +   L K  +     +L K+
Sbjct: 177 ENSGCVPKPGCYNAILSWLCKGSRINEAHKLFKR 210


>gi|356508608|ref|XP_003523047.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18900-like [Glycine max]
          Length = 879

 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 77/328 (23%), Positives = 143/328 (43%), Gaps = 11/328 (3%)

Query: 52  PTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLL 111
           P  E  L      +      Q+LK    H   AV FF W   Q    H  + +  +V +L
Sbjct: 335 PATEKTLYNLNFSIDAYQANQILKQLQDH-SVAVGFFCWLKRQPGFWHDGHTYTTMVGIL 393

Query: 112 GKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDV 170
           G+   F A+   ++ M K+    ++ T+  +  SY  A+ +++A+  F+ M++ GC+ D 
Sbjct: 394 GRAREFGAINKLLEQMVKDGCQPNVVTYNRLIHSYGRANYLREALNVFNQMQEMGCEPDR 453

Query: 171 FALNSLLSAICRDG-KTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGE 229
               +L+    + G   +    + R+ +  + PD  TY++++    K  +++ A + F E
Sbjct: 454 VTYCTLIDIHAKAGFLDVAMSMYERMQEVGLSPDTFTYSVMINCLGKSGNLSAAHRLFCE 513

Query: 230 MVIEVGWDPDNVPAYDSY-LITLLKGCDGIYETVNSLKRMMER-GCNPGMTFFKLAFEEC 287
           MV     D   VP   +Y ++  L+     Y+T   L R M+  G  P    + +  E  
Sbjct: 514 MV-----DQGCVPNIVTYNILIALQAKARNYQTALELYRDMQNAGFKPDKVTYSIVMEVL 568

Query: 288 LTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPD 347
                L  AE ++  M  +  + PD  +Y +++ L+  +     A +    M+  G  P+
Sbjct: 569 GHCGYLEEAEAVFFEMR-QNHWVPDEPVYGLLVDLWGKAGNVEKAWEWYHTMLRAGLLPN 627

Query: 348 IQTYNILFEFLVKGRKLWEASGLFNEMV 375
           + T N L    ++  +L +A  L   MV
Sbjct: 628 VPTCNSLLSAFLRVHRLPDAYNLLQNMV 655



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 73/280 (26%), Positives = 121/280 (43%), Gaps = 23/280 (8%)

Query: 172 ALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMV 231
           A+N LL  + +DG                +P+  TY  L+  + +   +  A   F +M 
Sbjct: 401 AINKLLEQMVKDG---------------CQPNVVTYNRLIHSYGRANYLREALNVFNQMQ 445

Query: 232 IEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSL-KRMMERGCNPGMTFFKLAFEECL-T 289
            E+G +PD V  Y + +    K   G  +   S+ +RM E G +P  TF       CL  
Sbjct: 446 -EMGCEPDRV-TYCTLIDIHAKA--GFLDVAMSMYERMQEVGLSPD-TFTYSVMINCLGK 500

Query: 290 GQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQ 349
             NL  A  ++  MV + G  P+   YN++I+L   +     A++L  +M   G  PD  
Sbjct: 501 SGNLSAAHRLFCEMVDQ-GCVPNIVTYNILIALQAKARNYQTALELYRDMQNAGFKPDKV 559

Query: 350 TYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYM 409
           TY+I+ E L     L EA  +F EM +N  V +       V ++  + +   A +++  M
Sbjct: 560 TYSIVMEVLGHCGYLEEAEAVFFEMRQNHWVPDEPVYGLLVDLWGKAGNVEKAWEWYHTM 619

Query: 410 IENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
           +         T N L++    +H LP+A    + M   G+
Sbjct: 620 LRAGLLPNVPTCNSLLSAFLRVHRLPDAYNLLQNMVTLGL 659



 Score = 47.0 bits (110), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 59/143 (41%), Gaps = 5/143 (3%)

Query: 244 YDSYLITLLKGCDGIYETVNSLKRMMER----GCNPGMTFFKLAFEECLTGQNLRGAEFI 299
           +D +  T + G  G      ++ +++E+    GC P +  +            LR A  +
Sbjct: 381 HDGHTYTTMVGILGRAREFGAINKLLEQMVKDGCQPNVVTYNRLIHSYGRANYLREALNV 440

Query: 300 WGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLV 359
           +  M   +G  PD   Y  +I ++  +     AM + + M   G  PD  TY+++   L 
Sbjct: 441 FNQMQ-EMGCEPDRVTYCTLIDIHAKAGFLDVAMSMYERMQEVGLSPDTFTYSVMINCLG 499

Query: 360 KGRKLWEASGLFNEMVKNENVLN 382
           K   L  A  LF EMV    V N
Sbjct: 500 KSGNLSAAHRLFCEMVDQGCVPN 522


>gi|296089773|emb|CBI39592.3| unnamed protein product [Vitis vinifera]
          Length = 577

 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 97/397 (24%), Positives = 164/397 (41%), Gaps = 78/397 (19%)

Query: 88  FRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVV 147
           FR SA   N    P   +LV +  G+  + ++++  +  +++   +++ TF  V +    
Sbjct: 190 FRLSALSCN----PMLVSLVKE--GRIGVVESVYKEM--IRRRIGVNVVTFDVVINGLCK 241

Query: 148 ADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGRIKPDNDT 206
             + + A    + M+ +G    V   N+++   C+ GK   A   L+ +V  RI P+  T
Sbjct: 242 VGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEIT 301

Query: 207 YAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITL-----LKGCDGIYE- 260
           + IL++G+ ++ +V  AKK F EM  + G  P NV  Y+S +  L     L    G+ + 
Sbjct: 302 FNILIDGFCRDENVTAAKKVFEEMQRQ-GLQP-NVVTYNSLINGLCSNGKLDEALGLQDK 359

Query: 261 -----------TVNSL------KRMME-----------RGCNPGMTFFKLAFEECLTGQN 292
                      T N+L      K+M++           RG  P +  F    +       
Sbjct: 360 MSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGR 419

Query: 293 LRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYN 352
           +  A F+  +M+   G  P+   YN +I  +C       A KL  EM  NG   D+ TYN
Sbjct: 420 MDDA-FLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYN 478

Query: 353 ILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIEN 412
           IL + L K  +  +A  L +EM     ++  +  RA +  Y                   
Sbjct: 479 ILVDALCKKGETRKAVRLLDEMT----LMEKKGRRANIVTY------------------- 515

Query: 413 HCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
                    N+L+ G C+   L EA +    M EKG+
Sbjct: 516 ---------NVLIKGFCNKGKLEEANRLLNEMLEKGL 543



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 97/467 (20%), Positives = 192/467 (41%), Gaps = 43/467 (9%)

Query: 13  PSPDPHNKRKRSTFASHLDVPNLPPT----IKTLCEIIANTPSPTVEDVLDKTLIRVSQE 68
           PS DP     ++ F+S       P +      T+ ++IA      ++ ++ +T    +  
Sbjct: 19  PSLDPKLNNTKTPFSSPNSTYTTPNSHTFDTPTISQLIAKQHWSKLKTIVKET----NPS 74

Query: 69  TVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMK 128
           ++ Q L  S + P   + +F+W+  +    H+   +  ++ LL     ++ +   + S  
Sbjct: 75  SLLQHLFNSEAQPDLILCYFKWTQKEFGAIHNVEQFCRLLHLLANAKNYNKIRALLDSFA 134

Query: 129 KENVLSLATF---ASVFSSYVVADR----------VKD-----AITTFDVMEQYGCKHDV 170
           K    S +T     SV  S+  A+           VK+     A+  FD    YG +   
Sbjct: 135 KNAHYSNSTIFHSLSVLGSWGCANSIIVDMLVWAYVKNGEMDLALEGFDRAGDYGFRLSA 194

Query: 171 FALNSLLSAICRDGKT-IDAWQFLRVVDGRIKPDNDTYAILLEG------WEKERDVANA 223
            + N +L ++ ++G+  +    +  ++  RI  +  T+ +++ G      ++K  DV   
Sbjct: 195 LSCNPMLVSLVKEGRIGVVESVYKEMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVED 254

Query: 224 KKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLA 283
            K +       G+ P +V  Y++ +    K    +++    LK M+ +  +P    F + 
Sbjct: 255 MKAW-------GFSP-SVITYNTIIDGYCKA-GKMFKADALLKEMVAKRIHPNEITFNIL 305

Query: 284 FEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNG 343
            +     +N+  A+ ++  M  R G +P+   YN +I+  C + +   A+ L D+M   G
Sbjct: 306 IDGFCRDENVTAAKKVFEEM-QRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMG 364

Query: 344 AFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAI 403
             P++ TYN L     K + L EA  + +++ K     N       +  Y  +     A 
Sbjct: 365 LKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAF 424

Query: 404 KFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQ 450
                M++        T N L+ G C    + EA K AK M   G++
Sbjct: 425 LLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLK 471


>gi|242069921|ref|XP_002450237.1| hypothetical protein SORBIDRAFT_05g002370 [Sorghum bicolor]
 gi|241936080|gb|EES09225.1| hypothetical protein SORBIDRAFT_05g002370 [Sorghum bicolor]
          Length = 757

 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 93/378 (24%), Positives = 158/378 (41%), Gaps = 21/378 (5%)

Query: 102 YAWNLVVDLLGKN--C-----LFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDA 154
           Y + +++D L KN  C     +FD++   I+   K NV     +  +   Y     + + 
Sbjct: 273 YIYAVLLDYLCKNGRCTEARNIFDSV---IRKGIKPNV---TIYGILLHGYATEGSLSEM 326

Query: 155 ITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEG 213
            +  D+M   G   D    N +  A  +     +A   F ++   R+ P+  TY  L++ 
Sbjct: 327 HSFLDLMVGNGVSPDHHIFNIMFCAYAKKAMIDEAMHIFDKMRQQRLSPNIVTYGALIDA 386

Query: 214 WEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGC 273
             K   V +A   F +M+ E G  PD +  + S L+  L   D   +       ++++G 
Sbjct: 387 LCKLGRVDDAVLKFNQMIDE-GMTPD-IFVFSS-LVYGLCTVDKWEKAEELFFEVLDQGI 443

Query: 274 NPGMTFFK-LAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAA 332
                FF  L    C  G+ +     I   ++ R+G RPD   YN ++  +C +     A
Sbjct: 444 RLDTVFFNTLMCNLCREGRVMEAQRLI--DLMLRVGVRPDVISYNTLVDGHCLTGRIDEA 501

Query: 333 MKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRV 392
            KLLD +V  G  PD  TYN L     K R++ +A  LF EM+      +       +  
Sbjct: 502 AKLLDVIVSIGLKPDKVTYNTLLHGYCKARRIDDAYSLFREMLMKGLTPDVVTYNTILHG 561

Query: 393 YMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVT 452
              +     A + +  MI +       T N+++ GLC  + + EA K    +  K +Q+ 
Sbjct: 562 LFQTGRFSEAKELYLSMINSRTQMNIYTYNIIINGLCKNNFVDEAFKMFHSLCSKDLQLD 621

Query: 453 PFALSKLKQILIK-ARKE 469
            F  + +   L+K  RKE
Sbjct: 622 IFTANIMIGALLKGGRKE 639



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 79/349 (22%), Positives = 134/349 (38%), Gaps = 54/349 (15%)

Query: 138 FASVFSSYVVADRVKDAI-TTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           F+ +      A RV +A       M ++GC  DVF+ + LL   C + +  +A + L ++
Sbjct: 131 FSQLLKGLCDAKRVDEATDILLRRMPEFGCTPDVFSYSILLKGFCNEKRAEEALELLSMM 190

Query: 197 ----DGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
               DG   P+  TY  +++G  K + V  AK  F  M I+ G  P+N     +Y   L+
Sbjct: 191 ADDGDGSHTPNVVTYTTVIDGLCKAQMVDRAKGVFQHM-IDKGVRPNN----HTY-TCLI 244

Query: 253 KGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD 312
            G    Y ++   K +++              +E  T                  G +PD
Sbjct: 245 HG----YLSIGKWKEVVQ------------MLQEMSTH-----------------GLQPD 271

Query: 313 THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFN 372
            ++Y +++   C +     A  + D ++  G  P++  Y IL         L E     +
Sbjct: 272 CYIYAVLLDYLCKNGRCTEARNIFDSVIRKGIKPNVTIYGILLHGYATEGSLSEMHSFLD 331

Query: 373 EMVKN-----ENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAG 427
            MV N      ++ N   C  A +  +D      A+  +  M +   S    T   L+  
Sbjct: 332 LMVGNGVSPDHHIFNIMFCAYAKKAMIDE-----AMHIFDKMRQQRLSPNIVTYGALIDA 386

Query: 428 LCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELL 476
           LC +  + +AV     M ++G+    F  S L   L    K    EEL 
Sbjct: 387 LCKLGRVDDAVLKFNQMIDEGMTPDIFVFSSLVYGLCTVDKWEKAEELF 435



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 67/287 (23%), Positives = 119/287 (41%), Gaps = 62/287 (21%)

Query: 146 VVADR-------VKDAITTFDVMEQYGCKHDVFALNSLLSAI----CRDGKTIDAWQFLR 194
           V+ADR       + DA+  FD M  +     V A N LL+A+    C     +    F R
Sbjct: 20  VIADRAHSGSLGLNDALKLFDEMLTHARPASVRAFNQLLTAVSRARCSSASELVVSLFNR 79

Query: 195 VV---DGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITL 251
           ++     ++ P + TY IL+  + +   + +    FG ++++ GW  ++   +      L
Sbjct: 80  MIRECSIKVAPSSFTYTILIGCFCRMGRLKHGFAAFG-LILKTGWRVNDTVIFSQ----L 134

Query: 252 LKG-CDG--IYETVNS-LKRMMERGCNPGMTFFKLAF---------EECL---------- 288
           LKG CD   + E  +  L+RM E GC P +  + +           EE L          
Sbjct: 135 LKGLCDAKRVDEATDILLRRMPEFGCTPDVFSYSILLKGFCNEKRAEEALELLSMMADDG 194

Query: 289 -------------------TGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNET 329
                                Q +  A+ ++  M+ + G RP+ H Y  +I  Y    + 
Sbjct: 195 DGSHTPNVVTYTTVIDGLCKAQMVDRAKGVFQHMIDK-GVRPNNHTYTCLIHGYLSIGKW 253

Query: 330 GAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK 376
              +++L EM  +G  PD   Y +L ++L K  +  EA  +F+ +++
Sbjct: 254 KEVVQMLQEMSTHGLQPDCYIYAVLLDYLCKNGRCTEARNIFDSVIR 300



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 93/460 (20%), Positives = 176/460 (38%), Gaps = 96/460 (20%)

Query: 69  TVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSP--YAWNLVVDLLGKNCLFDAMWDAIKS 126
           T+  +L   Y+  G   +   +    + +  SP  + +N++     K  + D        
Sbjct: 308 TIYGILLHGYATEGSLSEMHSFLDLMVGNGVSPDHHIFNIMFCAYAKKAMIDEAMHIFDK 367

Query: 127 MKKENVL-SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGK 185
           M+++ +  ++ T+ ++  +     RV DA+  F+ M   G   D+F  +SL+  +C    
Sbjct: 368 MRQQRLSPNIVTYGALIDALCKLGRVDDAVLKFNQMIDEGMTPDIFVFSSLVYGLC---- 423

Query: 186 TIDAWQ-----FLRVVD--------------------GRI---------------KPDND 205
           T+D W+     F  V+D                    GR+               +PD  
Sbjct: 424 TVDKWEKAEELFFEVLDQGIRLDTVFFNTLMCNLCREGRVMEAQRLIDLMLRVGVRPDVI 483

Query: 206 TYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG-CDG--IYETV 262
           +Y  L++G      +  A K   ++++ +G  PD V  Y+    TLL G C    I +  
Sbjct: 484 SYNTLVDGHCLTGRIDEAAKLL-DVIVSIGLKPDKV-TYN----TLLHGYCKARRIDDAY 537

Query: 263 NSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISL 322
           +  + M+ +G  P +  +               A+ ++ +M+     + + + YN++I+ 
Sbjct: 538 SLFREMLMKGLTPDVVTYNTILHGLFQTGRFSEAKELYLSMINS-RTQMNIYTYNIIING 596

Query: 323 YCYSNETGAAMKL----------LDEMVYN-------------------------GAFPD 347
            C +N    A K+          LD    N                         G  PD
Sbjct: 597 LCKNNFVDEAFKMFHSLCSKDLQLDIFTANIMIGALLKGGRKEDAMDLFATISAYGLVPD 656

Query: 348 IQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWK 407
           ++TY ++ E L+K   L E   LF+ M +N    N     A VR  +   D   A  +  
Sbjct: 657 VETYCLIAENLIKEGSLEELDELFSAMEENGTAPNSRMLNALVRWLLHRGDINRAGAYLS 716

Query: 408 YMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEK 447
            + E + S  + T ++L++    ++   E  + AK + EK
Sbjct: 717 KLDEKNFSLEASTTSMLIS----IYSRGEYQQLAKSLPEK 752


>gi|125575277|gb|EAZ16561.1| hypothetical protein OsJ_32034 [Oryza sativa Japonica Group]
          Length = 526

 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 76/303 (25%), Positives = 134/303 (44%), Gaps = 17/303 (5%)

Query: 152 KDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV---DGRIKPDNDTYA 208
           +DA   FD + + G   DVF+ N LL+ +C + ++ +A + L ++    G   PD  +Y+
Sbjct: 34  EDARHVFDELLRRGIP-DVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYS 92

Query: 209 ILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRM 268
            ++ G+ KE D+        + +++    P NV  Y+S +  L K    + + +  L  M
Sbjct: 93  TVINGFFKEGDL--------DKMLDQRISP-NVVTYNSIIAALCKA-QTVDKAMEVLTTM 142

Query: 269 MERGCNPG-MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSN 327
           ++ G  P  MT+  +    C +GQ      F+    +   G  PD   YN ++   C + 
Sbjct: 143 VKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFL--KKMRSDGVEPDVVTYNSLMDYLCKNG 200

Query: 328 ETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCR 387
               A K+ D M   G  PDI TY  L +       L E  GL + MV+N    NH    
Sbjct: 201 RCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFS 260

Query: 388 AAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEK 447
             V  Y   +    A+  +  M +   +  + T   ++  LC    + +A+ Y + M ++
Sbjct: 261 ILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDE 320

Query: 448 GIQ 450
           G++
Sbjct: 321 GLR 323



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 65/286 (22%), Positives = 127/286 (44%), Gaps = 8/286 (2%)

Query: 95  LNDKHSP--YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRV 151
           L+ + SP    +N ++  L K    D   + + +M K  V+    T+ S+   +  + + 
Sbjct: 108 LDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQP 167

Query: 152 KDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAIL 210
           K+AI     M   G + DV   NSL+  +C++G+  +A +    +  R +KPD  TY  L
Sbjct: 168 KEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTL 227

Query: 211 LEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMME 270
           L+G+  +  +        ++++  G  P++     S L+      + + E +    +M +
Sbjct: 228 LQGYATKGALVEMHGLL-DLMVRNGIHPNHYVF--SILVCAYAKQEKVEEAMLVFSKMRQ 284

Query: 271 RGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETG 330
           +G NP    +    +       +  A   +  M+   G RPD+ +YN +I   C  ++  
Sbjct: 285 QGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDE-GLRPDSIVYNSLIHSLCIFDKWE 343

Query: 331 AAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK 376
            A +L  EM+  G       +N + +   K  ++ E+  LF+ MV+
Sbjct: 344 KAEELFLEMLDRGICLSTIFFNSIIDSHCKEGRVIESGKLFDLMVR 389



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 122/298 (40%), Gaps = 35/298 (11%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           ++ T+ S+ ++   A  V  A+     M + G   D    NS++   C  G+  +A  FL
Sbjct: 115 NVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFL 174

Query: 194 RVV--DGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITL 251
           + +  DG ++PD  TY  L++   K      A+K F  M  + G  PD +  Y     TL
Sbjct: 175 KKMRSDG-VEPDVVTYNSLMDYLCKNGRCTEARKIFDSMT-KRGLKPD-ITTYG----TL 227

Query: 252 LKGC---DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIG 308
           L+G      + E    L  M+  G +P    F +        + +  A  ++  M  + G
Sbjct: 228 LQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQ-G 286

Query: 309 FRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEAS 368
             P+   Y  +I + C S     AM   ++M+  G  PD   YN L   L    K  +A 
Sbjct: 287 LNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKAE 346

Query: 369 GLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSD--LSETGNLL 424
            LF EM      L+   C + +              F+  +I++HC +  + E+G L 
Sbjct: 347 ELFLEM------LDRGICLSTI--------------FFNSIIDSHCKEGRVIESGKLF 384


>gi|115446945|ref|NP_001047252.1| Os02g0582300 [Oryza sativa Japonica Group]
 gi|50253069|dbj|BAD29317.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113536783|dbj|BAF09166.1| Os02g0582300 [Oryza sativa Japonica Group]
          Length = 845

 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 80/314 (25%), Positives = 132/314 (42%), Gaps = 28/314 (8%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RV 195
           T+ ++ ++     R   A + FD +E  G K +    NSL++ +C+ GK   AW+FL ++
Sbjct: 431 TYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKADIAWKFLEKM 490

Query: 196 VDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
           V     PD  TY+  +E   K +         GEM+       D  P+  +Y I + K  
Sbjct: 491 VSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEML-----QKDVKPSTVNYTIVIHKLL 545

Query: 256 -DGIYETV-NSLKRMMERGCNPGMTFFKLAFEE-CLTGQNLRGAEFIWGAMVGRIGFRPD 312
            +  Y  V  +   M+  GCNP +  +  +    C+ G+ L  AE +   M  + G   D
Sbjct: 546 KERNYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGR-LNEAENVLMEM-SKNGVTVD 603

Query: 313 THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGR---------- 362
           T  YN ++  +    +T  A+ +L +M    + P+  TY IL   LV+ R          
Sbjct: 604 TMAYNTLMDGHASIGQTDHAVSILKQMTSVASVPNQFTYFILLRHLVRMRLVEDVLPLTP 663

Query: 363 -KLWEAS------GLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCS 415
             +W+A       GLF+ M KNE + N     + +  + +      A      M E+  S
Sbjct: 664 AGVWKAIELTDVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSIS 723

Query: 416 DLSETGNLLVAGLC 429
              +    LV   C
Sbjct: 724 LNEDIYTALVTCFC 737



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 70/277 (25%), Positives = 111/277 (40%), Gaps = 10/277 (3%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           T+  +     +   ++ A     +ME  G   D +  N+L++A+C+DG+T  A      +
Sbjct: 396 TYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSL 455

Query: 197 DGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
           + R IKP+  T+  L+ G  K      A K F E ++  G  PD    Y S++  L K  
Sbjct: 456 ETRGIKPNAVTFNSLINGLCKSGKADIAWK-FLEKMVSAGCTPDTY-TYSSFIEHLCK-M 512

Query: 256 DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHM 315
            G  E ++ +  M+++   P    + +   + L  +N       WG MV   G  PD   
Sbjct: 513 KGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSS-GCNPDVVT 571

Query: 316 YNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
           Y   +  YC       A  +L EM  NG   D   YN L +      +   A  +  +M 
Sbjct: 572 YTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQTDHAVSILKQMT 631

Query: 376 KNENVLNHEN----CRAAVRVYMDSDD-PYVAIKFWK 407
              +V N        R  VR+ +  D  P      WK
Sbjct: 632 SVASVPNQFTYFILLRHLVRMRLVEDVLPLTPAGVWK 668



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 70/326 (21%), Positives = 129/326 (39%), Gaps = 40/326 (12%)

Query: 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR 194
           + T  +V ++Y    R+ DA+   ++M+  GCK +V+  N+L+   C +GK   A   L 
Sbjct: 324 VVTCTAVINAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLN 383

Query: 195 VVDG-RIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLK 253
            +    + PD  TY +L+ G   +  + +A +                      L+ L++
Sbjct: 384 KMRACGVNPDAVTYNLLIRGQCIDGHIESAFR----------------------LLRLME 421

Query: 254 GCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDT 313
           G DG+     +   ++   C  G T    +  + L  +                G +P+ 
Sbjct: 422 G-DGLIADQYTYNALINALCKDGRTDQACSLFDSLETR----------------GIKPNA 464

Query: 314 HMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNE 373
             +N +I+  C S +   A K L++MV  G  PD  TY+   E L K +   E      E
Sbjct: 465 VTFNSLINGLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGE 524

Query: 374 MVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHM 433
           M++ +   +  N    +   +   +  +  + W  M+ + C+    T    +   C    
Sbjct: 525 MLQKDVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGR 584

Query: 434 LPEAVKYAKGMAEKGIQVTPFALSKL 459
           L EA      M++ G+ V   A + L
Sbjct: 585 LNEAENVLMEMSKNGVTVDTMAYNTL 610



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 80/370 (21%), Positives = 141/370 (38%), Gaps = 50/370 (13%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           TF S+   Y   ++V  A   FD M   G   DV +  +L+  +C  G+  +A +    +
Sbjct: 190 TFNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYATLIEGLCEAGRIDEAVELFGEM 249

Query: 197 DGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVI-----EVGWDPDNVP--------- 242
           D   +PD   YA L++G      + NA++    +++     E+GW P             
Sbjct: 250 D---QPDMHMYAALVKG------LCNAERGEEGLLMLRRMKELGWRPSTRAYAAVVDFRC 300

Query: 243 --------------AYDSYLITLLKGCDGIY----------ETVNSLKRMMERGCNPGM- 277
                          ++  L   +  C  +           + +  L+ M  RGC P + 
Sbjct: 301 RERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRGCKPNVW 360

Query: 278 TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLD 337
           T+  L    C  G+  +    +    +   G  PD   YN++I   C      +A +LL 
Sbjct: 361 TYNALVQGFCNEGKVHKAMTLL--NKMRACGVNPDAVTYNLLIRGQCIDGHIESAFRLLR 418

Query: 338 EMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSD 397
            M  +G   D  TYN L   L K  +  +A  LF+ +       N     + +     S 
Sbjct: 419 LMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSG 478

Query: 398 DPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALS 457
              +A KF + M+   C+  + T +  +  LC M    E + +   M +K ++ +    +
Sbjct: 479 KADIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYT 538

Query: 458 KLKQILIKAR 467
            +   L+K R
Sbjct: 539 IVIHKLLKER 548



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 41/73 (56%)

Query: 302 AMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKG 361
           +++ R G+RPD + +N +I  YC +N+   A  L D+M   G   D+ +Y  L E L + 
Sbjct: 177 SLMVRSGWRPDAYTFNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYATLIEGLCEA 236

Query: 362 RKLWEASGLFNEM 374
            ++ EA  LF EM
Sbjct: 237 GRIDEAVELFGEM 249



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 53/248 (21%), Positives = 93/248 (37%), Gaps = 8/248 (3%)

Query: 202 PDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYET 261
           P   TY  ++    +  D+A A +    MV   GW PD    ++S ++   +  + +   
Sbjct: 151 PTAPTYNAVIRSLCRRADLARALRYLSLMV-RSGWRPDAY-TFNSLIVGYCR-TNQVDVA 207

Query: 262 VNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMIS 321
            +   +M  RG    +  +    E       +  A  ++G M      +PD HMY  ++ 
Sbjct: 208 RDLFDKMPLRGFAQDVVSYATLIEGLCEAGRIDEAVELFGEMD-----QPDMHMYAALVK 262

Query: 322 LYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVL 381
             C +      + +L  M   G  P  + Y  + +F  + RK  EA  +  EM +     
Sbjct: 263 GLCNAERGEEGLLMLRRMKELGWRPSTRAYAAVVDFRCRERKAKEAEEMLQEMFEKGLAP 322

Query: 382 NHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYA 441
               C A +  Y        A++  + M    C     T N LV G C+   + +A+   
Sbjct: 323 CVVTCTAVINAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLL 382

Query: 442 KGMAEKGI 449
             M   G+
Sbjct: 383 NKMRACGV 390


>gi|413915825|gb|AFW21589.1| hypothetical protein ZEAMMB73_481763 [Zea mays]
 gi|413923991|gb|AFW63923.1| hypothetical protein ZEAMMB73_685382 [Zea mays]
          Length = 953

 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 89/396 (22%), Positives = 164/396 (41%), Gaps = 58/396 (14%)

Query: 105 NLVVDLLGKNCLF---------DAMWDAIKSMKKENV-LSLATFASVFSSYVVADRVKDA 154
            L +D++G N L          DA W+  + MK + V  S+ T  ++   Y    R+++A
Sbjct: 219 GLSLDVVGYNTLVAGFFYSGDADAAWEVAERMKADGVEPSVVTHTTLIGEYCKMKRIEEA 278

Query: 155 ITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDG-RIKPDNDTYAILLEG 213
            T ++ M + G   DV  L++L+  +CRDG+  +A+   R +D   + P++ TY   ++ 
Sbjct: 279 FTLYEGMVRSGVLPDVVTLSALVDGLCRDGRFSEAYALFREMDKIGVAPNHVTYCTFIDS 338

Query: 214 WEKERDVANAKKTFGEMV-----------------------IEVGWD------PDNV-PA 243
             K + V  +    GEMV                       IE   D       DN+ P 
Sbjct: 339 LAKVQRVNESLGLLGEMVSRGVAMDLVMYTTVMDRLGKEGKIEEAKDVLRHALSDNITPN 398

Query: 244 YDSYLITLLKGCDG--IYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWG 301
             +Y + +   C    I      L +M E+  +P +    + F   L G   RG      
Sbjct: 399 CVTYTVLVDAHCRAGNIDGAEQMLLQMEEKSVSPNV----VTFSSILNGLVKRGCIAKAA 454

Query: 302 AMVGRI---GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFL 358
             + ++   G  P+   Y  +I  +       AA+ +  +M++ G    ++  N + + L
Sbjct: 455 GYMRKMKDSGIAPNVVTYGTLIDGFFKCQGQEAALDVYRDMLHEG----VEANNFIVDSL 510

Query: 359 VKGRK----LWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHC 414
           V G +    + EA  LF +M +   +L+H N    +     + +   A+K  + ++E + 
Sbjct: 511 VNGLRKNGNIEEAEALFKDMGERGLLLDHVNYATLMDGLFKTGNMPAALKVGQELMERNL 570

Query: 415 SDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQ 450
           S  +   N+ +  LC +    EA  + K M   G++
Sbjct: 571 SPDAVVYNVFINCLCRLGKFSEAKSFLKEMRNTGLE 606



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 75/291 (25%), Positives = 121/291 (41%), Gaps = 7/291 (2%)

Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVD-GRIKPDNDTYAILLEGWEKERD 219
           M   G + D    N+++SA CR+G T  A + L  +    IKP+  TY  L+ G  +   
Sbjct: 600 MRNTGLEPDQATYNTMISAQCREGNTSKALKLLNEMKWSSIKPNLITYTTLVVGLLEAGV 659

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTF 279
           V  AK    EM    G+ P   P     ++    G    Y  +   + MM  G +  +T 
Sbjct: 660 VEKAKYLLNEMA-SAGFTP--TPLTYRRVLQACSGSRSPYVILEVHELMMGAGLHADITV 716

Query: 280 FK-LAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDE 338
           +  L    C  G   R A  +   M+GR G  PDT  +N +I  +C S+    A     +
Sbjct: 717 YNTLVHVLCCHGMT-RKATIVLDEMLGR-GIAPDTITFNALILGHCKSSHLDNAFATYAQ 774

Query: 339 MVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDD 398
           M++ G  P+I T+N L   L    ++ EA  +  EM K     N+      V  Y    +
Sbjct: 775 MLHQGLSPNIATFNTLLGGLESAGRIGEADTVICEMKKMGLEPNNLTYDILVTGYAKKSN 834

Query: 399 PYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
              A++ +  M+       + T N L++      M+ +A +    M  +G+
Sbjct: 835 KVEALRLYCEMVSKGFIPKASTYNSLISDFAKAGMMNQAKELFSEMKRRGV 885



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 86/383 (22%), Positives = 147/383 (38%), Gaps = 41/383 (10%)

Query: 104 WNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVME 162
           +  V+D LGK    +   D ++    +N+  +  T+  +  ++  A  +  A      ME
Sbjct: 367 YTTVMDRLGKEGKIEEAKDVLRHALSDNITPNCVTYTVLVDAHCRAGNIDGAEQMLLQME 426

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV-DGRIKPDNDTYAILLEGWEKERDVA 221
           +     +V   +S+L+ + + G    A  ++R + D  I P+  TY  L++G+ K +   
Sbjct: 427 EKSVSPNVVTFSSILNGLVKRGCIAKAAGYMRKMKDSGIAPNVVTYGTLIDGFFKCQGQE 486

Query: 222 NAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFK 281
            A   + +M+ E G + +N    DS L+  L+    I E     K M ERG       + 
Sbjct: 487 AALDVYRDMLHE-GVEANNF-IVDS-LVNGLRKNGNIEEAEALFKDMGERGLLLDHVNYA 543

Query: 282 LAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNM----------------------- 318
              +      N+  A  +   ++ R    PD  +YN+                       
Sbjct: 544 TLMDGLFKTGNMPAALKVGQELMER-NLSPDAVVYNVFINCLCRLGKFSEAKSFLKEMRN 602

Query: 319 ------------MISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWE 366
                       MIS  C    T  A+KLL+EM ++   P++ TY  L   L++   + +
Sbjct: 603 TGLEPDQATYNTMISAQCREGNTSKALKLLNEMKWSSIKPNLITYTTLVVGLLEAGVVEK 662

Query: 367 ASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVA 426
           A  L NEM            R  ++    S  PYV ++  + M+           N LV 
Sbjct: 663 AKYLLNEMASAGFTPTPLTYRRVLQACSGSRSPYVILEVHELMMGAGLHADITVYNTLVH 722

Query: 427 GLCDMHMLPEAVKYAKGMAEKGI 449
            LC   M  +A      M  +GI
Sbjct: 723 VLCCHGMTRKATIVLDEMLGRGI 745



 Score = 43.9 bits (102), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 50/216 (23%), Positives = 89/216 (41%), Gaps = 13/216 (6%)

Query: 169 DVFALNSLLSAICRDGKTIDAWQFLRVVDG---RIKPDNDTYAILLEGWEKERDVANAKK 225
           D   LNS++ + C       A   LR   G   ++  D  +Y I L G  ++     A  
Sbjct: 79  DPLTLNSIILSYCSLHALRPALSLLRSSSGPQPQVAADTVSYNIFLAGLSEQGHGRLAPP 138

Query: 226 TFGEMVIE-VGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNP---GMTFFK 281
              EM    V WD   +    + L+ L +   G+     +L  M+ RG      G+  + 
Sbjct: 139 VLSEMCKRGVPWDGVTM---STALVGLSR--TGLVGEAAALAEMLVRGRGIDGLGVVGWN 193

Query: 282 LAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVY 341
              +     Q++  A  +   M  + G   D   YN +++ + YS +  AA ++ + M  
Sbjct: 194 ALIDGYCKVQDMAAALAVVERMTTQ-GLSLDVVGYNTLVAGFFYSGDADAAWEVAERMKA 252

Query: 342 NGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKN 377
           +G  P + T+  L     K +++ EA  L+  MV++
Sbjct: 253 DGVEPSVVTHTTLIGEYCKMKRIEEAFTLYEGMVRS 288


>gi|242065464|ref|XP_002454021.1| hypothetical protein SORBIDRAFT_04g023230 [Sorghum bicolor]
 gi|241933852|gb|EES06997.1| hypothetical protein SORBIDRAFT_04g023230 [Sorghum bicolor]
          Length = 729

 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 92/388 (23%), Positives = 154/388 (39%), Gaps = 56/388 (14%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           S+ T++ +  +   A   + A+   D M   GC+ D+   N L++A+C +G   +A   L
Sbjct: 196 SVVTYSILLDATCKASGYRQAMVLLDEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNIL 255

Query: 194 RVVDGR-IKPDNDTYAILLE---GWEKERDV------------ANAKKTFGEMVI----- 232
             +     KPD  TY  +L+   G E+ ++V            A  + TF  +V      
Sbjct: 256 SDLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELFAEMASNKCAPDEVTFNTIVTSLCQQ 315

Query: 233 --------------EVGWDPDNVPAYDSYLITLLKGCD--GIYETVNSLKRMMERGCNPG 276
                         E G  PD V  Y S L  L   CD   + + V  L R+   GC P 
Sbjct: 316 GLVDRAIKVVDHMSEHGCIPDIV-TYSSILDGL---CDVGRVDDAVELLSRLKSYGCKPD 371

Query: 277 MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLL 336
              +    +   + +    AE +   MV      PD   +N +I+  C       A+K++
Sbjct: 372 TIAYTTVLKGLCSIEQWEHAEELMAEMVCS-DCPPDEVTFNTVIASLCQKGLVDRAIKVV 430

Query: 337 DEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDS 396
           ++M  NG  PDI TYN + + L   R + +A  L +        L    C+  +  +   
Sbjct: 431 EQMSENGCNPDIVTYNSIIDGLCNERCIDDAMELLSN-------LQSYGCKPDIVTFNTL 483

Query: 397 DDPYVAIKFWK-------YMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
                ++  W+        M+ + C   + T N ++  LC   +L +A++  K MAE G 
Sbjct: 484 LKGLCSVDRWEDAEQLMVNMMHSDCPPDATTFNTVITSLCQKGLLLQAIETLKIMAENGC 543

Query: 450 QVTPFALSKLKQILIKARKEAVYEELLK 477
                  + +   L+KA K     +LL 
Sbjct: 544 IPNQSTYNIVVDALLKAGKTQEALKLLS 571



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 85/368 (23%), Positives = 148/368 (40%), Gaps = 20/368 (5%)

Query: 92  AYQLNDKHSP--YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVA 148
           A   ++K +P    +N +V  L +  L D     +  M +   +  + T++S+       
Sbjct: 291 AEMASNKCAPDEVTFNTIVTSLCQQGLVDRAIKVVDHMSEHGCIPDIVTYSSILDGLCDV 350

Query: 149 DRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-----FLRVVDGRIKPD 203
            RV DA+     ++ YGCK D  A  ++L  +C    +I+ W+        +V     PD
Sbjct: 351 GRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLC----SIEQWEHAEELMAEMVCSDCPPD 406

Query: 204 NDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL-KGCDGIYETV 262
             T+  ++    ++  V  A K   +M  E G +PD V  Y+S +  L  + C  I + +
Sbjct: 407 EVTFNTVIASLCQKGLVDRAIKVVEQMS-ENGCNPDIV-TYNSIIDGLCNERC--IDDAM 462

Query: 263 NSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISL 322
             L  +   GC P +  F    +   +      AE +   M+      PD   +N +I+ 
Sbjct: 463 ELLSNLQSYGCKPDIVTFNTLLKGLCSVDRWEDAEQLMVNMM-HSDCPPDATTFNTVITS 521

Query: 323 YCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLN 382
            C       A++ L  M  NG  P+  TYNI+ + L+K  K  EA  L + M      L 
Sbjct: 522 LCQKGLLLQAIETLKIMAENGCIPNQSTYNIVVDALLKAGKTQEALKLLSGMTNGTPDLI 581

Query: 383 HENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAK 442
             N    +     +     A+   + M+ N  S  + T   L  G+C       A++   
Sbjct: 582 TYN--TVISNITKAGKMEEALDLLRVMVSNGLSPDTITYRSLAYGICREDGTDRAIRMLC 639

Query: 443 GMAEKGIQ 450
            + + G+ 
Sbjct: 640 RLQDMGLS 647



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 72/320 (22%), Positives = 117/320 (36%), Gaps = 54/320 (16%)

Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
           TF  +  +  V  RV DA+  FD M   GC   V   + LL A C+      A   L  +
Sbjct: 164 TFNPLIRALCVRGRVPDALAVFDDMLHRGCSPSVVTYSILLDATCKASGYRQAMVLLDEM 223

Query: 197 DGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
             +  +PD  TY +L+     E DV                                   
Sbjct: 224 RAKGCEPDIVTYNVLINAMCNEGDVD---------------------------------- 249

Query: 256 DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHM 315
               E +N L  +   GC P    +    +     +  +  E ++  M       PD   
Sbjct: 250 ----EALNILSDLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELFAEMASN-KCAPDEVT 304

Query: 316 YNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
           +N +++  C       A+K++D M  +G  PDI TY+ + + L    ++ +A  L +   
Sbjct: 305 FNTIVTSLCQQGLVDRAIKVVDHMSEHGCIPDIVTYSSILDGLCDVGRVDDAVELLSR-- 362

Query: 376 KNENVLNHENCRAAVRVYMDSDDPYVAIKFWKY----MIENHCSDLSE---TGNLLVAGL 428
                L    C+     Y        +I+ W++    M E  CSD      T N ++A L
Sbjct: 363 -----LKSYGCKPDTIAYTTVLKGLCSIEQWEHAEELMAEMVCSDCPPDEVTFNTVIASL 417

Query: 429 CDMHMLPEAVKYAKGMAEKG 448
           C   ++  A+K  + M+E G
Sbjct: 418 CQKGLVDRAIKVVEQMSENG 437



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 69/342 (20%), Positives = 132/342 (38%), Gaps = 14/342 (4%)

Query: 142 FSSYVVADRVKDAITTFDVMEQYGCKHDVFAL-----NSLLSAICRDGKTIDAWQFLRVV 196
             S +  + + DA+   D +   G       L     N L+  +C  G+  DA +    +
Sbjct: 65  LRSLIQREEIDDALALVDSIASGGGSGKCLPLPVVPCNILIKRLCSGGRVADAERVFATL 124

Query: 197 DGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD 256
                    TY  ++ G+ +   + +A++    M     + PD            ++G  
Sbjct: 125 GASATVV--TYNTMVNGYCRAGRIEDARRLISGM----PFPPDTFTFNPLIRALCVRG-- 176

Query: 257 GIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMY 316
            + + +     M+ RGC+P +  + +  +        R A  +   M  + G  PD   Y
Sbjct: 177 RVPDALAVFDDMLHRGCSPSVVTYSILLDATCKASGYRQAMVLLDEMRAK-GCEPDIVTY 235

Query: 317 NMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK 376
           N++I+  C   +   A+ +L ++  +G  PD  TY  + + L    +  E   LF EM  
Sbjct: 236 NVLINAMCNEGDVDEALNILSDLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELFAEMAS 295

Query: 377 NENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPE 436
           N+   +       V           AIK   +M E+ C     T + ++ GLCD+  + +
Sbjct: 296 NKCAPDEVTFNTIVTSLCQQGLVDRAIKVVDHMSEHGCIPDIVTYSSILDGLCDVGRVDD 355

Query: 437 AVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKK 478
           AV+    +   G +    A + + + L    +    EEL+ +
Sbjct: 356 AVELLSRLKSYGCKPDTIAYTTVLKGLCSIEQWEHAEELMAE 397



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 68/273 (24%), Positives = 122/273 (44%), Gaps = 14/273 (5%)

Query: 104 WNLVVD-LLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVM 161
           +N ++D L  + C+ DAM + + +++       + TF ++       DR +DA      M
Sbjct: 445 YNSIIDGLCNERCIDDAM-ELLSNLQSYGCKPDIVTFNTLLKGLCSVDRWEDAEQLMVNM 503

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV--DGRIKPDNDTYAILLEGWEKERD 219
               C  D    N++++++C+ G  + A + L+++  +G I P+  TY I+++   K   
Sbjct: 504 MHSDCPPDATTFNTVITSLCQKGLLLQAIETLKIMAENGCI-PNQSTYNIVVDALLKAGK 562

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNP-GMT 278
              A K    M       PD +  Y++ +  + K    + E ++ L+ M+  G +P  +T
Sbjct: 563 TQEALKLLSGMT---NGTPDLI-TYNTVISNITKA-GKMEEALDLLRVMVSNGLSPDTIT 617

Query: 279 FFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDE 338
           +  LA+  C      R    +    +  +G  PD   YN ++  +C +  T  A+     
Sbjct: 618 YRSLAYGICREDGTDRAIRML--CRLQDMGLSPDATFYNDILLGFCQNWRTDIAIDCFAH 675

Query: 339 MVYNGAFPDIQTYNILFEFLVKGRKLWEASGLF 371
           MV +G  PD  TY IL E L     L EA  L 
Sbjct: 676 MVSSGCMPDESTYIILLEALAYECLLDEAKQLL 708


>gi|115441099|ref|NP_001044829.1| Os01g0852900 [Oryza sativa Japonica Group]
 gi|18461197|dbj|BAB84394.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|113534360|dbj|BAF06743.1| Os01g0852900 [Oryza sativa Japonica Group]
 gi|125572662|gb|EAZ14177.1| hypothetical protein OsJ_04103 [Oryza sativa Japonica Group]
          Length = 703

 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 83/350 (23%), Positives = 144/350 (41%), Gaps = 14/350 (4%)

Query: 104 WNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVME 162
           +N+++D L K   F  + +  + M   N+   + T+  +      +  V  A   +  + 
Sbjct: 267 YNVMLDGLCKFGRFKEVGEVWERMVANNLQPDVITYGILIHGLCRSGDVDGAARVYSEII 326

Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVAN 222
           + G   D    NSL+   C+ G+  +AW+F          +  TY I+++G      V  
Sbjct: 327 KTGLVIDAAMYNSLVKGFCQAGRVQEAWKFWDSAGFAGLRNLRTYNIMIKGLFDSGMVDE 386

Query: 223 AKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG-CDGIYETVNSLKRMMERGCNPGMTFFK 281
           A + +  +  +V   PD V        TL+ G C   +   N    + E     G     
Sbjct: 387 AIELWDLLEKDVACIPDTVT-----FGTLIHGLCQNGF--ANKAFTIFEEARVSGKQLDV 439

Query: 282 LAFEECLTG----QNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLD 337
            ++   + G      L  A  ++  M  + G +P++H+YN +IS +C    T  A+++  
Sbjct: 440 FSYSSMINGLCNVGRLVDAVKVYEKM-DKDGCKPNSHIYNALISGFCQVYRTSDAVRIYS 498

Query: 338 EMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSD 397
           +M  NG  P + TYN L + L K  K  EAS +  EMV+N    +     + +R      
Sbjct: 499 KMADNGCSPTVITYNTLIDGLCKAEKYQEASSVAREMVENGFTPDITTYGSLIRGLFSDK 558

Query: 398 DPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEK 447
               A+  WK ++           N+L+ GLC    + EA+     M EK
Sbjct: 559 KIDDALSIWKQILYKGLKVDVMMHNILIHGLCSAGKVDEALHVFSDMKEK 608



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 76/319 (23%), Positives = 128/319 (40%), Gaps = 12/319 (3%)

Query: 140 SVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDG- 198
           S FS  ++ D   DA      +   GC   + + N+LL A  R  +  DA  F   +   
Sbjct: 91  SAFSRAIMPDAALDAFRALPSI--LGCNPGIRSHNALLDAFVRARRFSDADAFFASLSHG 148

Query: 199 ----RIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG 254
               RI P+  TY I+L       D+  A   F  +       PD +  Y + +  L K 
Sbjct: 149 AFGRRIAPNLQTYNIVLRSLCARGDLDRAVTLFDSLR-RRQVAPDRI-TYSTLMCGLAKQ 206

Query: 255 CDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTH 314
            D +   ++ L  M      P +  +      C           +W  +V   G RP+  
Sbjct: 207 -DRLDHALDLLDEMPRSRVQPDVVCYNALLGGCFKAGEFEKVMRVWDKLVKDPGARPNLA 265

Query: 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
            YN+M+   C         ++ + MV N   PD+ TY IL   L +   +  A+ +++E+
Sbjct: 266 TYNVMLDGLCKFGRFKEVGEVWERMVANNLQPDVITYGILIHGLCRSGDVDGAARVYSEI 325

Query: 375 VKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHML 434
           +K   V++     + V+ +  +     A KFW         +L  T N+++ GL D  M+
Sbjct: 326 IKTGLVIDAAMYNSLVKGFCQAGRVQEAWKFWDSAGFAGLRNL-RTYNIMIKGLFDSGMV 384

Query: 435 PEAVKYAKGMAEKGIQVTP 453
            EA++    + EK +   P
Sbjct: 385 DEAIELWD-LLEKDVACIP 402



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 82/379 (21%), Positives = 151/379 (39%), Gaps = 46/379 (12%)

Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
           +L T+  V  S      +  A+T FD + +     D    ++L+  + +  +   A   L
Sbjct: 157 NLQTYNIVLRSLCARGDLDRAVTLFDSLRRRQVAPDRITYSTLMCGLAKQDRLDHALDLL 216

Query: 194 -RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
             +   R++PD   Y  LL G  K  +     + + ++V + G  P N+  Y+  L  L 
Sbjct: 217 DEMPRSRVQPDVVCYNALLGGCFKAGEFEKVMRVWDKLVKDPGARP-NLATYNVMLDGLC 275

Query: 253 KGCDGIYETVNSL-KRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRP 311
           K   G ++ V  + +RM+     P +  + +         ++ GA  ++  ++ + G   
Sbjct: 276 KF--GRFKEVGEVWERMVANNLQPDVITYGILIHGLCRSGDVDGAARVYSEII-KTGLVI 332

Query: 312 DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLF 371
           D  MYN ++  +C +     A K  D   + G   +++TYNI+ + L     + EA  L+
Sbjct: 333 DAAMYNSLVKGFCQAGRVQEAWKFWDSAGFAG-LRNLRTYNIMIKGLFDSGMVDEAIELW 391

Query: 372 NEMVKNE---------NVLNHENCRAA-----------VRVYMDSDDPYV---------- 401
           + + K+            L H  C+              RV     D +           
Sbjct: 392 DLLEKDVACIPDTVTFGTLIHGLCQNGFANKAFTIFEEARVSGKQLDVFSYSSMINGLCN 451

Query: 402 ------AIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFA 455
                 A+K ++ M ++ C   S   N L++G C ++   +AV+    MA+ G   T   
Sbjct: 452 VGRLVDAVKVYEKMDKDGCKPNSHIYNALISGFCQVYRTSDAVRIYSKMADNGCSPTVIT 511

Query: 456 LSKLKQILIKARKEAVYEE 474
            + L   L KA K   Y+E
Sbjct: 512 YNTLIDGLCKAEK---YQE 527



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 52/225 (23%), Positives = 97/225 (43%), Gaps = 6/225 (2%)

Query: 138 FASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VV 196
           + ++ S +    R  DA+  +  M   GC   V   N+L+  +C+  K  +A    R +V
Sbjct: 477 YNALISGFCQVYRTSDAVRIYSKMADNGCSPTVITYNTLIDGLCKAEKYQEASSVAREMV 536

Query: 197 DGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD 256
           +    PD  TY  L+ G   ++ + +A   + +++ + G   D +    + LI  L    
Sbjct: 537 ENGFTPDITTYGSLIRGLFSDKKIDDALSIWKQILYK-GLKVDVM--MHNILIHGLCSAG 593

Query: 257 GIYETVNSLKRMMER-GCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHM 315
            + E ++    M E+  C P +  +    +       +  A  +W ++    G  PD   
Sbjct: 594 KVDEALHVFSDMKEKKNCPPNLVTYNTLMDGLYETGYIDKAATLWTSIT-EDGLEPDIIS 652

Query: 316 YNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVK 360
           YN  I   C  +     ++LLDE++  G  P + T+NIL   ++K
Sbjct: 653 YNTRIKGLCSCDRIHEGIQLLDEVLSRGIIPTVITWNILVRAVIK 697



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 76/359 (21%), Positives = 147/359 (40%), Gaps = 32/359 (8%)

Query: 121 WDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQ-YGCKHDVFALNSLLSA 179
           WD+       N   L T+  +      +  V +AI  +D++E+   C  D     +L+  
Sbjct: 357 WDSAGFAGLRN---LRTYNIMIKGLFDSGMVDEAIELWDLLEKDVACIPDTVTFGTLIHG 413

Query: 180 ICRDG---KTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGW 236
           +C++G   K    ++  RV   ++  D  +Y+ ++ G      + +A K + +M      
Sbjct: 414 LCQNGFANKAFTIFEEARVSGKQL--DVFSYSSMINGLCNVGRLVDAVKVYEKM------ 465

Query: 237 DPDNVPAYDSYLITLLKGCDGIYETVNSLK---RMMERGCNPGMTFFKLAFEECLTGQNL 293
           D D           L+ G   +Y T ++++   +M + GC+P +  +    +     +  
Sbjct: 466 DKDGCKPNSHIYNALISGFCQVYRTSDAVRIYSKMADNGCSPTVITYNTLIDGLCKAEKY 525

Query: 294 RGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNI 353
           + A  +   MV   GF PD   Y  +I       +   A+ +  +++Y G   D+  +NI
Sbjct: 526 QEASSVAREMVEN-GFTPDITTYGSLIRGLFSDKKIDDALSIWKQILYKGLKVDVMMHNI 584

Query: 354 LFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVY---MDS--DDPYV--AIKFW 406
           L   L    K+ EA  +F++M +       +NC   +  Y   MD   +  Y+  A   W
Sbjct: 585 LIHGLCSAGKVDEALHVFSDMKEK------KNCPPNLVTYNTLMDGLYETGYIDKAATLW 638

Query: 407 KYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIK 465
             + E+       + N  + GLC    + E ++    +  +GI  T    + L + +IK
Sbjct: 639 TSITEDGLEPDIISYNTRIKGLCSCDRIHEGIQLLDEVLSRGIIPTVITWNILVRAVIK 697


>gi|15234269|ref|NP_192906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213756|sp|Q9T0D6.1|PP306_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g11690
 gi|4539460|emb|CAB39940.1| putative protein [Arabidopsis thaliana]
 gi|7267869|emb|CAB78212.1| putative protein [Arabidopsis thaliana]
 gi|91806660|gb|ABE66057.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332657639|gb|AEE83039.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 566

 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 75/308 (24%), Positives = 137/308 (44%), Gaps = 7/308 (2%)

Query: 152 KDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAIL 210
           K     ++ M++ G   +++  N +++ +C+DG+T DA+Q    +  R +  +  TY  L
Sbjct: 250 KQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTL 309

Query: 211 LEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMME 270
           + G  +E  +  A K   +M  + G +P N+  Y++ LI    G   + + ++  + +  
Sbjct: 310 IGGLCREMKLNEANKVVDQMKSD-GINP-NLITYNT-LIDGFCGVGKLGKALSLCRDLKS 366

Query: 271 RGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETG 330
           RG +P +  + +         +  GA  +   M  R G +P    Y ++I  +  S+   
Sbjct: 367 RGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEER-GIKPSKVTYTILIDTFARSDNME 425

Query: 331 AAMKLLDEMVYNGAFPDIQTYNILFE-FLVKGRKLWEASGLFNEMVKNENVLNHENCRAA 389
            A++L   M   G  PD+ TY++L   F +KG+ + EAS LF  MV+     N       
Sbjct: 426 KAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQ-MNEASRLFKSMVEKNCEPNEVIYNTM 484

Query: 390 VRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
           +  Y      Y A+K  K M E   +    +   ++  LC      EA +  + M + GI
Sbjct: 485 ILGYCKEGSSYRALKLLKEMEEKELAPNVASYRYMIEVLCKERKSKEAERLVEKMIDSGI 544

Query: 450 QVTPFALS 457
             +   LS
Sbjct: 545 DPSTSILS 552



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 71/313 (22%), Positives = 131/313 (41%), Gaps = 8/313 (2%)

Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVM 161
            + ++++ L KN +    ++  + M+++ V  +L T+  V +      R KDA   FD M
Sbjct: 235 TYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEM 294

Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV--DGRIKPDNDTYAILLEGWEKERD 219
            + G   ++   N+L+  +CR+ K  +A + +  +  DG I P+  TY  L++G+     
Sbjct: 295 RERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDG-INPNLITYNTLIDGFCGVGK 353

Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTF 279
           +  A     ++    G  P  V  Y+  +    +  D        +K M ERG  P    
Sbjct: 354 LGKALSLCRDLKSR-GLSPSLV-TYNILVSGFCRKGD-TSGAAKMVKEMEERGIKPSKVT 410

Query: 280 FKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEM 339
           + +  +      N+  A  +  +M   +G  PD H Y+++I  +C   +   A +L   M
Sbjct: 411 YTILIDTFARSDNMEKAIQLRLSM-EELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSM 469

Query: 340 VYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDP 399
           V     P+   YN +     K    + A  L  EM + E   N  + R  + V       
Sbjct: 470 VEKNCEPNEVIYNTMILGYCKEGSSYRALKLLKEMEEKELAPNVASYRYMIEVLCKERKS 529

Query: 400 YVAIKFWKYMIEN 412
             A +  + MI++
Sbjct: 530 KEAERLVEKMIDS 542



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 71/345 (20%), Positives = 126/345 (36%), Gaps = 74/345 (21%)

Query: 141 VFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRI 200
           + +SYV +  +  +I+ F+ M   G        N LL+ +         W F      ++
Sbjct: 100 IINSYVQSQSLNLSISYFNEMVDNGFVPGSNCFNYLLTFVVGSSSFNQWWSFFNENKSKV 159

Query: 201 KPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYE 260
             D  ++ IL++G  +  ++  +     E+  E G+ P NV  Y     TL+ GC     
Sbjct: 160 VLDVYSFGILIKGCCEAGEIEKSFDLLIELT-EFGFSP-NVVIYT----TLIDGC----- 208

Query: 261 TVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMI 320
                                     C  G+  +  +  +   +G++G   +   Y ++I
Sbjct: 209 --------------------------CKKGEIEKAKDLFFE--MGKLGLVANERTYTVLI 240

Query: 321 SLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM------ 374
           +    +       ++ ++M  +G FP++ TYN +   L K  +  +A  +F+EM      
Sbjct: 241 NGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERGVS 300

Query: 375 --VKNENVLNHENCRA-------AVRVYMDSDDPYVAIKFWKYMIENHCS---------- 415
             +   N L    CR         V   M SD     +  +  +I+  C           
Sbjct: 301 CNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSL 360

Query: 416 --DLSETG--------NLLVAGLCDMHMLPEAVKYAKGMAEKGIQ 450
             DL   G        N+LV+G C       A K  K M E+GI+
Sbjct: 361 CRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIK 405


>gi|357487519|ref|XP_003614047.1| hypothetical protein MTR_5g044120 [Medicago truncatula]
 gi|355515382|gb|AES97005.1| hypothetical protein MTR_5g044120 [Medicago truncatula]
          Length = 507

 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 99/458 (21%), Positives = 192/458 (41%), Gaps = 52/458 (11%)

Query: 42  LCEII---ANTPSPTVEDVLDKTLIRVSQETVEQVLK-FSYSHPGPAVKFFRWSAYQLND 97
           +C I+    N+P   +   L  +   ++ E   QV   F YS   P  +FF ++  + N 
Sbjct: 40  VCTILYQQQNSPDSRLHSKLTSSNFNLTHEFFLQVCNNFPYSWR-PVYRFFLFTQQEKNS 98

Query: 98  K--HSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAI 155
              H+  ++N ++D++ K+   D  W  +    +  +++  TF     +   A  +K  +
Sbjct: 99  SFTHTHVSFNKMLDVVAKSRNIDLFWSLVNETARRGLVNNKTFVIGLKTLGGARELKKCV 158

Query: 156 TTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWE 215
             F +M   G  + V  LN ++  +C+     +A   +  +   IK D  +Y  L+ G+ 
Sbjct: 159 EFFHLMNLNGYGYSVERLNKVVEEMCKVKLVEEAKFVVFKMKDLIKLDGVSYKWLISGFC 218

Query: 216 KERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD-----GIYETVNSLKRMME 270
           ++ D+  A K +  MV E G+ PD V   ++++ T  K         +++T+  LKRM E
Sbjct: 219 EKGDLIEASKIWNLMVDE-GFVPD-VDVVENFMETFFKVNQFGEGLKLFQTMR-LKRMDE 275

Query: 271 RGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETG 330
            G +      K     C  G  +  A  ++  M  R G R D+     ++      +   
Sbjct: 276 LGVSTYRVVIKWL---CKKGM-MDNAHEVFDEMCER-GIRVDSLTLGYVVYGLLAKHRVR 330

Query: 331 AAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAV 390
            A ++++++       DI  Y+ L + L+K R+  EA+ +F EM+K         C   +
Sbjct: 331 EAYQIVEKI----DVVDISVYHGLIKGLLKLRRASEATQVFREMIK-------RGCEPTM 379

Query: 391 RVYMDSDDPYVAIKFWKYMIENHCSDLSETG--------NLLVAGLCDMHMLPEAVKYAK 442
             Y+              +++ H       G        ++ V G+  +    EA+KY +
Sbjct: 380 HTYI-------------MLLQGHLGRRGRKGTDPLVNFDSIFVGGMVKVGHSKEAIKYVE 426

Query: 443 GMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKCK 480
            +  +G++V  F  +K            ++EE+ KK +
Sbjct: 427 RVMNRGMEVPRFDYNKFLHYFSNEEGAVMFEEVAKKLR 464


>gi|356557209|ref|XP_003546910.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g80880, mitochondrial-like [Glycine max]
          Length = 504

 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 68/282 (24%), Positives = 129/282 (45%), Gaps = 21/282 (7%)

Query: 83  PAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVF 142
           PA+  F+WS +  ++K      NL++ +L  +  F   W  I+ M + ++ +      + 
Sbjct: 108 PALLAFKWSCHGNDEK----VCNLMIWVLATHGKFSTAWCIIRDMHRSSLSTRQAMLIMI 163

Query: 143 SSYVVADRVKDAITTFDVMEQ--YGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRI 200
             Y  A+    AI TF+ M++  +    D  + ++LL+A+C+     +  +F+ V     
Sbjct: 164 DRYASANNSAKAIQTFNFMDKSDFRLTPDQESFHALLTALCKYRNVEEDEEFMLVNKKLF 223

Query: 201 KPDNDTYAILLEGW-EKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIY 259
             D + + I+L GW    +D+  AK+ + EM  +    PD   +Y SY+I+       ++
Sbjct: 224 HLDTEGFNIILNGWCNITKDIYEAKRVWREMS-KYCITPD-ATSY-SYMISCFSKEGNLF 280

Query: 260 ETVNSLKRMMERGCNPGMTFFK-----LAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTH 314
           +++    +M +RG  PG+  +      L  E CL  + LR  +      +   G +P + 
Sbjct: 281 DSLRLYDQMKKRGWIPGIEIYNSLVYVLTHENCLK-EALRTID-----KLKEQGLQPGSV 334

Query: 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFE 356
            +N MI   C + +   A  + + MV     P  +TY+  FE
Sbjct: 335 TFNSMILSLCEAGKLAEARIIFNSMVEENVSPTTETYHAFFE 376


>gi|296084709|emb|CBI25851.3| unnamed protein product [Vitis vinifera]
          Length = 528

 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 99/418 (23%), Positives = 171/418 (40%), Gaps = 30/418 (7%)

Query: 54  VEDVLDKTLIRVSQETVEQVL-KFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLG 112
           +E  L     ++    V +VL + S +     ++FF W+  Q   +HS Y ++   +L  
Sbjct: 48  IEKTLPAVRAKLDSSCVNEVLNRCSLTQSQLGLRFFIWAGVQSYYRHSSYLYSKACELFR 107

Query: 113 KNCLFDAMWDAIKSMKKE-NVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVF 171
            N    A+ D I++ + E  V+S+ TF  V      A    +A+     M ++  + D  
Sbjct: 108 INQNPRAIIDVIEAYRVEGTVVSVKTFNVVLHLLREAKLADEALWILKKMAEFNIRADTV 167

Query: 172 ALNSLLSAICRDGKTIDAWQFLR---VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFG 228
           A NS++   C  G    A   ++   ++D  + P+  TY  +++G+     + +A K F 
Sbjct: 168 AYNSVIRLFCEKGDMDLAAGLMKEMGLID--LYPNMITYVTMIKGFCNVGRLEDACKLFK 225

Query: 229 EMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMER---------GCNPGMTF 279
            M    G  P NV  Y   L       DG+     SL+R +E           C+P +  
Sbjct: 226 VMKGH-GCSP-NVVVYTVIL-------DGVCR-FGSLERALELLGEMEKESGDCSPNVVT 275

Query: 280 FKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEM 339
           +    + C     L  A  I   M    G  P+    ++++  +C       A KL+D++
Sbjct: 276 YTSMIQSCCEKGKLMEALEILDRMRA-CGCAPNRVTVSILMKGFCAEGRVEEAFKLIDKV 334

Query: 340 VYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDP 399
           V  G     + Y+ L   LV  + L EA  LF  M+ N    +   C   ++        
Sbjct: 335 VAGGNVSYGECYSSLIVSLVGNKNLQEAEKLFRRMLANAVKPDGLACGTLIKALCLEGRV 394

Query: 400 YVAIKFWKYM--IENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQV-TPF 454
                 +     +E      S+  ++L+ GL       EAVK A+ M ++GIQ+ TP+
Sbjct: 395 LDGFHLFDEFENMEGLSYLDSDIYSILLVGLSQKRHSVEAVKLARLMVDRGIQLKTPY 452


>gi|356505993|ref|XP_003521773.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Glycine max]
          Length = 570

 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 83/377 (22%), Positives = 156/377 (41%), Gaps = 50/377 (13%)

Query: 91  SAYQLNDK-----HSP--YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVF 142
           SAYQ+ D+      SP    +N+++  L    + D+  +    + KEN   ++ T+  + 
Sbjct: 144 SAYQVLDRMKNKGFSPDIVTYNILIGSLCSRGMLDSALEFKNQLLKENCKPTVVTYTILI 203

Query: 143 SSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IK 201
            + ++   + +A+   D M +   + D+F  NS++  +CR+G    A+Q +  +  +   
Sbjct: 204 EATLLQGGIDEAMKLLDEMLEINLQPDMFTYNSIIRGMCREGYVDRAFQIISSISSKGYA 263

Query: 202 PDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYET 261
           PD  TY ILL G      + N  K          W+                     YE 
Sbjct: 264 PDVITYNILLRG------LLNQGK----------WEAG-------------------YEL 288

Query: 262 VNSLKRMMERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMI 320
           ++    M+ RGC   + T+  L    C  G+   G   +    + + G +PD + Y+ +I
Sbjct: 289 MSD---MVARGCEANVVTYSVLISSVCRDGKVEEGVGLLKD--MKKKGLKPDGYCYDPLI 343

Query: 321 SLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENV 380
           +  C       A+++LD M+ +G  PDI  YN +   L K ++  EA  +F ++ +    
Sbjct: 344 AALCKEGRVDLAIEVLDVMISDGCVPDIVNYNTILACLCKQKRADEALSIFEKLGEVGCS 403

Query: 381 LNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKY 440
            N  +  +       +     A+     M++        T N L++ LC   M+ EA++ 
Sbjct: 404 PNASSYNSMFSALWSTGHKVRALGMILEMLDKGVDPDGITYNSLISCLCRDGMVDEAIEL 463

Query: 441 AKGMAEKGIQVTPFALS 457
              M  +  +  P  +S
Sbjct: 464 LVDMEMESSECKPSVVS 480



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 79/326 (24%), Positives = 136/326 (41%), Gaps = 12/326 (3%)

Query: 125 KSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDG 184
           K  K + VL       +F+S      +  AI    ++E +G   D+ A N++++  CR  
Sbjct: 86  KGHKPDVVLCTKLIHGLFTS----KTIDKAIQVMHILENHG-HPDLIAYNAIITGFCRAN 140

Query: 185 KTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPA 243
           +   A+Q L R+ +    PD  TY IL+ G    R + ++   F   +++    P  V  
Sbjct: 141 RIDSAYQVLDRMKNKGFSPDIVTYNILI-GSLCSRGMLDSALEFKNQLLKENCKPTVVTY 199

Query: 244 YDSYLITLLKGCDGIYETVNSLKRMMERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGA 302
                 TLL+G  GI E +  L  M+E    P M T+  +    C  G   R  + I  +
Sbjct: 200 TILIEATLLQG--GIDEAMKLLDEMLEINLQPDMFTYNSIIRGMCREGYVDRAFQII--S 255

Query: 303 MVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGR 362
            +   G+ PD   YN+++       +  A  +L+ +MV  G   ++ TY++L   + +  
Sbjct: 256 SISSKGYAPDVITYNILLRGLLNQGKWEAGYELMSDMVARGCEANVVTYSVLISSVCRDG 315

Query: 363 KLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGN 422
           K+ E  GL  +M K     +       +          +AI+    MI + C       N
Sbjct: 316 KVEEGVGLLKDMKKKGLKPDGYCYDPLIAALCKEGRVDLAIEVLDVMISDGCVPDIVNYN 375

Query: 423 LLVAGLCDMHMLPEAVKYAKGMAEKG 448
            ++A LC      EA+   + + E G
Sbjct: 376 TILACLCKQKRADEALSIFEKLGEVG 401



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 66/270 (24%), Positives = 122/270 (45%), Gaps = 10/270 (3%)

Query: 117 FDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSL 176
           ++ M D +    + NV+   T++ + SS     +V++ +     M++ G K D +  + L
Sbjct: 286 YELMSDMVARGCEANVV---TYSVLISSVCRDGKVEEGVGLLKDMKKKGLKPDGYCYDPL 342

Query: 177 LSAICRDGKTIDAWQFLRVV--DGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEV 234
           ++A+C++G+   A + L V+  DG + PD   Y  +L    K++    A   F E + EV
Sbjct: 343 IAALCKEGRVDLAIEVLDVMISDGCV-PDIVNYNTILACLCKQKRADEALSIF-EKLGEV 400

Query: 235 GWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNP-GMTFFKLAFEECLTGQNL 293
           G  P N  +Y+S    L      +   +  +  M+++G +P G+T+  L    C  G   
Sbjct: 401 GCSP-NASSYNSMFSALWSTGHKV-RALGMILEMLDKGVDPDGITYNSLISCLCRDGMVD 458

Query: 294 RGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNI 353
              E +    +     +P    YN+++   C  +    A+++L  MV  G  P+  TY  
Sbjct: 459 EAIELLVDMEMESSECKPSVVSYNIVLLGLCKVSRVSDAIEVLAAMVDKGCRPNETTYTF 518

Query: 354 LFEFLVKGRKLWEASGLFNEMVKNENVLNH 383
           L E +  G  L +A  L   +V  + +  H
Sbjct: 519 LIEGIGFGGCLNDARDLATTLVNMDAISEH 548



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 79/172 (45%), Gaps = 17/172 (9%)

Query: 311 PDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGL 370
           PD   YN +I+ +C +N   +A ++LD M   G  PDI TYNIL   L        + G+
Sbjct: 124 PDLIAYNAIITGFCRANRIDSAYQVLDRMKNKGFSPDIVTYNILIGSLC-------SRGM 176

Query: 371 FNEMVKNENVLNHENCRAAVRVYMDSDDPYV-------AIKFWKYMIENHCSDLSETGNL 423
            +  ++ +N L  ENC+  V  Y    +  +       A+K    M+E +      T N 
Sbjct: 177 LDSALEFKNQLLKENCKPTVVTYTILIEATLLQGGIDEAMKLLDEMLEINLQPDMFTYNS 236

Query: 424 LVAGLCDMHMLPEAVKYAKGMAEKGI--QVTPFALSKLKQILIKARKEAVYE 473
           ++ G+C    +  A +    ++ KG    V  + +  L+ +L + + EA YE
Sbjct: 237 IIRGMCREGYVDRAFQIISSISSKGYAPDVITYNI-LLRGLLNQGKWEAGYE 287


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.321    0.136    0.419 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,740,884,068
Number of Sequences: 23463169
Number of extensions: 323125360
Number of successful extensions: 794172
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 3386
Number of HSP's successfully gapped in prelim test: 1807
Number of HSP's that attempted gapping in prelim test: 729988
Number of HSP's gapped (non-prelim): 28025
length of query: 482
length of database: 8,064,228,071
effective HSP length: 146
effective length of query: 336
effective length of database: 8,933,572,693
effective search space: 3001680424848
effective search space used: 3001680424848
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 79 (35.0 bits)