BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038748
(482 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FVX2|PP129_ARATH Pentatricopeptide repeat-containing protein At1g77360,
mitochondrial OS=Arabidopsis thaliana GN=At1g77360 PE=2
SV=2
Length = 517
Score = 201 bits (510), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 129/453 (28%), Positives = 230/453 (50%), Gaps = 5/453 (1%)
Query: 26 FASHLDVPNLPPTIKTLCEIIANTPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAV 85
++S V ++ K + +++ ++P ++ LD++ +RVSQE VE VL +
Sbjct: 59 YSSSEQVRDVADVAKNISKVLMSSPQLVLDSALDQSGLRVSQEVVEDVLNRFRNAGLLTY 118
Query: 86 KFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSY 145
+FF+WS Q + +HS A++++++ K + MWD I +M+K+ +L++ TF V Y
Sbjct: 119 RFFQWSEKQRHYEHSVRAYHMMIESTAKIRQYKLMWDLINAMRKKKMLNVETFCIVMRKY 178
Query: 146 VVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDND 205
A +V +AI F+VME+Y ++ A N LLSA+C+ A + + R PD+
Sbjct: 179 ARAQKVDEAIYAFNVMEKYDLPPNLVAFNGLLSALCKSKNVRKAQEVFENMRDRFTPDSK 238
Query: 206 TYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSL 265
TY+ILLEGW KE ++ A++ F EM I+ G PD V S ++ +L + E + +
Sbjct: 239 TYSILLEGWGKEPNLPKAREVFREM-IDAGCHPDIVTY--SIMVDILCKAGRVDEALGIV 295
Query: 266 KRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCY 325
+ M C P + + T L A + M R G + D ++N +I +C
Sbjct: 296 RSMDPSICKPTTFIYSVLVHTYGTENRLEEAVDTFLEM-ERSGMKADVAVFNSLIGAFCK 354
Query: 326 SNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHEN 385
+N ++L EM G P+ ++ NI+ L++ + EA +F +M+K + +
Sbjct: 355 ANRMKNVYRVLKEMKSKGVTPNSKSCNIILRHLIERGEKDEAFDVFRKMIKVCEP-DADT 413
Query: 386 CRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMA 445
++++ + + A K WKYM + T ++L+ GLC+ +A + M
Sbjct: 414 YTMVIKMFCEKKEMETADKVWKYMRKKGVFPSMHTFSVLINGLCEERTTQKACVLLEEMI 473
Query: 446 EKGIQVTPFALSKLKQILIKARKEAVYEELLKK 478
E GI+ + +L+Q+LIK +E V + L +K
Sbjct: 474 EMGIRPSGVTFGRLRQLLIKEEREDVLKFLNEK 506
>sp|Q9C9A2|PP112_ARATH Pentatricopeptide repeat-containing protein At1g71060,
mitochondrial OS=Arabidopsis thaliana GN=At1g71060 PE=2
SV=1
Length = 510
Score = 166 bits (421), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 126/459 (27%), Positives = 216/459 (47%), Gaps = 15/459 (3%)
Query: 24 STFASHLDVPNLPPTIKTLCEIIANTPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGP 83
S+ + + + + +C+I+ VE +L++ +++S +E+VLK +
Sbjct: 51 SSVETQVSANDASQDAERICKILTKFTDSKVETLLNEASVKLSPALIEEVLKKLSNAGVL 110
Query: 84 AVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFS 143
A+ F+W+ Q KH+ +N +++ LGK F +W + MK + +LS TFA +
Sbjct: 111 ALSVFKWAENQKGFKHTTSNYNALIESLGKIKQFKLIWSLVDDMKAKKLLSKETFALISR 170
Query: 144 SYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKP 202
Y A +VK+AI F ME++G K + N +L + + DA + F ++ R +P
Sbjct: 171 RYARARKVKEAIGAFHKMEEFGFKMESSDFNRMLDTLSKSRNVGDAQKVFDKMKKKRFEP 230
Query: 203 DNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDG--IYE 260
D +Y ILLEGW +E ++ + EM E G++PD V +Y I + C E
Sbjct: 231 DIKSYTILLEGWGQELNLLRVDEVNREMKDE-GFEPDVV----AYGIIINAHCKAKKYEE 285
Query: 261 TVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGA-EFIWGAMVGRIGFRPDTHMYNMM 319
+ M +R C P F + + L A EF + GF + YN +
Sbjct: 286 AIRFFNEMEQRNCKPSPHIFCSLINGLGSEKKLNDALEFFERSKSS--GFPLEAPTYNAL 343
Query: 320 ISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNEN 379
+ YC+S A K +DEM G P+ +TY+I+ L++ ++ EA ++ M
Sbjct: 344 VGAYCWSQRMEDAYKTVDEMRLKGVGPNARTYDIILHHLIRMQRSKEAYEVYQTMSCEPT 403
Query: 380 VLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVK 439
V +E VR++ + + +AIK W M + L+ LC + L EA +
Sbjct: 404 VSTYE---IMVRMFCNKERLDMAIKIWDEMKGKGVLPGMHMFSSLITALCHENKLDEACE 460
Query: 440 YAKGMAEKGIQVTPFALSKLKQILI-KARKEAVYEELLK 477
Y M + GI+ S+LKQ L+ + RK+ V + ++K
Sbjct: 461 YFNEMLDVGIRPPGHMFSRLKQTLLDEGRKDKVTDLVVK 499
>sp|Q9LN22|PPR54_ARATH Pentatricopeptide repeat-containing protein At1g20300,
mitochondrial OS=Arabidopsis thaliana GN=At1g20300 PE=2
SV=1
Length = 537
Score = 149 bits (377), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 115/401 (28%), Positives = 194/401 (48%), Gaps = 13/401 (3%)
Query: 84 AVKFFRWSAYQLN-DKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASV 141
++ FF W+ + + D SP+ +N ++DL GK FD W I MK NV +S+ TF +
Sbjct: 133 SLAFFNWATSRDDYDHKSPHPYNEMIDLSGKVRQFDLAWHLIDLMKSRNVEISIETFTIL 192
Query: 142 FSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIK 201
YV A +A+ F+ ME YGC D A + ++S + R + +A F + R +
Sbjct: 193 IRRYVRAGLASEAVHCFNRMEDYGCVPDKIAFSIVISNLSRKRRASEAQSFFDSLKDRFE 252
Query: 202 PDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYET 261
PD Y L+ GW + +++ A+K F EM + G +P NV Y S +I L C I
Sbjct: 253 PDVIVYTNLVRGWCRAGEISEAEKVFKEMKL-AGIEP-NVYTY-SIVIDALCRCGQISRA 309
Query: 262 VNSLKRMMERGCNP-GMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMI 320
+ M++ GC P +TF L G+ + + ++ M ++G PDT YN +I
Sbjct: 310 HDVFADMLDSGCAPNAITFNNLMRVHVKAGRTEKVLQ-VYNQM-KKLGCEPDTITYNFLI 367
Query: 321 SLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENV 380
+C A+K+L+ M+ + T+N +F ++ K R + A ++++M++ +
Sbjct: 368 EAHCRDENLENAVKVLNTMIKKKCEVNASTFNTIFRYIEKKRDVNGAHRMYSKMMEAKCE 427
Query: 381 LNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKY 440
N +R+++ S + +K K M + T LLV C M A K
Sbjct: 428 PNTVTYNILMRMFVGSKSTDMVLKMKKEMDDKEVEPNVNTYRLLVTMFCGMGHWNNAYKL 487
Query: 441 AKGMAEKGIQVTPFALSKLKQILIKARKEAV---YEELLKK 478
K M E+ +TP +LS + +L + R+ +EEL++K
Sbjct: 488 FKEMVEEKC-LTP-SLSLYEMVLAQLRRAGQLKKHEELVEK 526
>sp|Q9LZP3|PP293_ARATH Pentatricopeptide repeat-containing protein At3g62470,
mitochondrial OS=Arabidopsis thaliana GN=At3g62470 PE=2
SV=1
Length = 599
Score = 138 bits (348), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 106/458 (23%), Positives = 209/458 (45%), Gaps = 6/458 (1%)
Query: 25 TFASHLDVPNLPPTIKTLCEIIAN--TPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPG 82
T S ++ P ++ +C++I +E VLD+ + +S + + +VL+
Sbjct: 117 TGVSCVESSTNPEEVERVCKVIDELFALDRNMEAVLDEMKLDLSHDLIVEVLERFRHARK 176
Query: 83 PAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVF 142
PA +FF W+A + H +N ++ +L K F+ M ++ M + +L++ TF
Sbjct: 177 PAFRFFCWAAERQGFAHDSRTYNSMMSILAKTRQFETMVSVLEEMGTKGLLTMETFTIAM 236
Query: 143 SSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKP 202
++ A K A+ F++M++Y K V +N LL ++ R +A + R P
Sbjct: 237 KAFAAAKERKKAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLKERFTP 296
Query: 203 DNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETV 262
+ TY +LL GW + R++ A + + +M I+ G PD V A++ L LL+ + +
Sbjct: 297 NMMTYTVLLNGWCRVRNLIEAARIWNDM-IDQGLKPDIV-AHNVMLEGLLRSRKK-SDAI 353
Query: 263 NSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISL 322
M +G P + + + + ++ A + MV G +PD +Y +I+
Sbjct: 354 KLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDS-GLQPDAAVYTCLITG 412
Query: 323 YCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLN 382
+ + +LL EM G PD +TYN L + + + A+ ++N+M++NE +
Sbjct: 413 FGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHATRIYNKMIQNEIEPS 472
Query: 383 HENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAK 442
++ Y + + + W+ MI+ + +L+ GL EA +Y +
Sbjct: 473 IHTFNMIMKSYFMARNYEMGRAVWEEMIKKGICPDDNSYTVLIRGLIGEGKSREACRYLE 532
Query: 443 GMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKCK 480
M +KG++ +K + + ++EEL ++ K
Sbjct: 533 EMLDKGMKTPLIDYNKFAADFHRGGQPEIFEELAQRAK 570
>sp|Q3EAF8|PP294_ARATH Pentatricopeptide repeat-containing protein At3g62540,
mitochondrial OS=Arabidopsis thaliana GN=At3g62540 PE=2
SV=1
Length = 599
Score = 137 bits (346), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 105/458 (22%), Positives = 208/458 (45%), Gaps = 6/458 (1%)
Query: 25 TFASHLDVPNLPPTIKTLCEIIAN--TPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPG 82
T S ++ P ++ +C++I +E VLD+ + +S + + +VL+
Sbjct: 117 TGVSCVESSTNPEEVERVCKVIDELFALDRNMEAVLDEMKLDLSHDLIVEVLERFRHARK 176
Query: 83 PAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVF 142
PA +FF W+A + H+ +N ++ +L K F+ M ++ M + +L++ TF
Sbjct: 177 PAFRFFCWAAERQGFAHASRTYNSMMSILAKTRQFETMVSVLEEMGTKGLLTMETFTIAM 236
Query: 143 SSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKP 202
++ A K A+ F++M++Y K V +N LL ++ R +A + R P
Sbjct: 237 KAFAAAKERKKAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLKERFTP 296
Query: 203 DNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETV 262
+ TY +LL GW + R++ A + + +M I+ G PD V A++ L LL+ + +
Sbjct: 297 NMMTYTVLLNGWCRVRNLIEAARIWNDM-IDHGLKPDIV-AHNVMLEGLLRSMKK-SDAI 353
Query: 263 NSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISL 322
M +G P + + + + ++ A + MV G +PD +Y +I+
Sbjct: 354 KLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDS-GLQPDAAVYTCLITG 412
Query: 323 YCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLN 382
+ + +LL EM G PD +TYN L + + + + ++N+M++NE +
Sbjct: 413 FGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRIYNKMIQNEIEPS 472
Query: 383 HENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAK 442
++ Y + + + W MI+ + +L+ GL EA +Y +
Sbjct: 473 IHTFNMIMKSYFVARNYEMGRAVWDEMIKKGICPDDNSYTVLIRGLISEGKSREACRYLE 532
Query: 443 GMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKCK 480
M +KG++ +K + + ++EEL ++ K
Sbjct: 533 EMLDKGMKTPLIDYNKFAADFHRGGQPEIFEELAQRAK 570
>sp|Q9LEQ7|PP382_ARATH Pentatricopeptide repeat-containing protein At5g14820,
mitochondrial OS=Arabidopsis thaliana GN=At5g14820 PE=2
SV=1
Length = 598
Score = 137 bits (344), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 105/458 (22%), Positives = 207/458 (45%), Gaps = 6/458 (1%)
Query: 25 TFASHLDVPNLPPTIKTLCEIIAN--TPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPG 82
T S ++ P ++ +C++I +E VLD+ + +S + + +VL+
Sbjct: 116 TGVSCVESSTNPEEVERVCKVIDELFALDRNMEAVLDEMKLDLSHDLIVEVLERFRHARK 175
Query: 83 PAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVF 142
PA +FF W+A + H +N ++ +L K F+ M ++ M + +L++ TF
Sbjct: 176 PAFRFFCWAAERQGFAHDSRTYNSMMSILAKTRQFETMVSVLEEMGTKGLLTMETFTIAM 235
Query: 143 SSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKP 202
++ A K A+ F++M++Y K V +N LL ++ R +A + R P
Sbjct: 236 KAFAAAKERKKAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLKERFTP 295
Query: 203 DNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETV 262
+ TY +LL GW + R++ A + + +M I+ G PD V A++ L LL+ + +
Sbjct: 296 NMMTYTVLLNGWCRVRNLIEAARIWNDM-IDHGLKPDIV-AHNVMLEGLLRSMKK-SDAI 352
Query: 263 NSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISL 322
M +G P + + + + ++ A + MV G +PD +Y +I+
Sbjct: 353 KLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDS-GLQPDAAVYTCLITG 411
Query: 323 YCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLN 382
+ + +LL EM G PD +TYN L + + + + ++N+M++NE +
Sbjct: 412 FGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRIYNKMIQNEIEPS 471
Query: 383 HENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAK 442
++ Y + + + W MI+ + +L+ GL EA +Y +
Sbjct: 472 IHTFNMIMKSYFVARNYEMGRAVWDEMIKKGICPDDNSYTVLIRGLISEGKSREACRYLE 531
Query: 443 GMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKCK 480
M +KG++ +K + + ++EEL ++ K
Sbjct: 532 EMLDKGMKTPLIDYNKFAADFHRGGQPEIFEELAQRAK 569
>sp|Q9FX35|PP117_ARATH Pentatricopeptide repeat-containing protein At1g73400,
mitochondrial OS=Arabidopsis thaliana GN=At1g73400 PE=2
SV=2
Length = 568
Score = 136 bits (343), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 110/411 (26%), Positives = 178/411 (43%), Gaps = 21/411 (5%)
Query: 54 VEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLG- 112
+E LD++ + ++ V ++L+ A +FF W+ +Q + H P A+N ++D+L
Sbjct: 112 MEKALDESSVDLTTPVVCKILQRLQYEEKTAFRFFTWAGHQEHYSHEPIAYNEMIDILSS 171
Query: 113 ---KNCLFDAMWDAIKSMKKEN--VLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCK 167
KN F + D + MK+ N V+ + + Y +R + F ++ K
Sbjct: 172 TKYKNKQFRIVIDMLDYMKRNNKTVVLVDVLLEILRKY--CERYLTHVQKFAKRKRIRVK 229
Query: 168 H--DVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKK 225
++ A N LL A+C+ G + LR + R+KPD +T+ +L GW + RD A K
Sbjct: 230 TQPEINAFNMLLDALCKCGLVKEGEALLRRMRHRVKPDANTFNVLFFGWCRVRDPKKAMK 289
Query: 226 TFGEMVIEVGWDPDNVPAYDSYLITLLKGCDG--IYETVNSLKRMMERGCN---PGMTFF 280
EM IE G P+N +Y + C + E + M+ +G P F
Sbjct: 290 LLEEM-IEAGHKPENF----TYCAAIDTFCQAGMVDEAADLFDFMITKGSAVSAPTAKTF 344
Query: 281 KLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMV 340
L + G M+ G PD Y +I C + + A K LDEM
Sbjct: 345 ALMIVALAKNDKAEECFELIGRMIS-TGCLPDVSTYKDVIEGMCMAEKVDEAYKFLDEMS 403
Query: 341 YNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPY 400
G PDI TYN L + RK EA L+ MV++ + + + ++ + DDP
Sbjct: 404 NKGYPPDIVTYNCFLRVLCENRKTDEALKLYGRMVESRCAPSVQTYNMLISMFFEMDDPD 463
Query: 401 VAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQV 451
A W M + C ET ++ GL D H EA + + KG+++
Sbjct: 464 GAFNTWTEMDKRDCVQDVETYCAMINGLFDCHRAKEACFLLEEVVNKGLKL 514
>sp|Q9SSR6|PPR78_ARATH Pentatricopeptide repeat-containing protein At1g52640,
mitochondrial OS=Arabidopsis thaliana GN=At1g52640 PE=2
SV=1
Length = 523
Score = 135 bits (341), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 118/449 (26%), Positives = 207/449 (46%), Gaps = 18/449 (4%)
Query: 26 FASHLDVPNLPPTIKTLCEIIANTPSPTVEDVLDKTLI----RVSQETVEQVLKFSYSHP 81
F++ L P P + + ++++ +P +D L+ TL+ RVS VEQVLK +
Sbjct: 25 FSTLLHDPPSPDLVNEISRVLSDHRNP--KDDLEHTLVAYSPRVSSNLVEQVLKRCKNLG 82
Query: 82 GPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLAT--FA 139
PA +FF W+ + HS +++++V++LG + F +WD + ++ N +++ F
Sbjct: 83 FPAHRFFLWARRIPDFAHSLESYHILVEILGSSKQFALLWDFLIEAREYNYFEISSKVFW 142
Query: 140 SVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDG- 198
VF +Y A+ +A F+ M ++G K V L+ LL ++C A +F G
Sbjct: 143 IVFRAYSRANLPSEACRAFNRMVEFGIKPCVDDLDQLLHSLCDKKHVNHAQEFFGKAKGF 202
Query: 199 RIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG--CD 256
I P TY+IL+ GW + RD + A+K F EM +E D + AY++ L L K D
Sbjct: 203 GIVPSAKTYSILVRGWARIRDASGARKVFDEM-LERNCVVD-LLAYNALLDALCKSGDVD 260
Query: 257 GIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMY 316
G Y+ + M G P F + ++ A + M R P+ + +
Sbjct: 261 GGYKM---FQEMGNLGLKPDAYSFAIFIHAYCDAGDVHSAYKVLDRM-KRYDLVPNVYTF 316
Query: 317 NMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK 376
N +I C + + A LLDEM+ GA PD TYN + + ++ A+ L + M +
Sbjct: 317 NHIIKTLCKNEKVDDAYLLLDEMIQKGANPDTWTYNSIMAYHCDHCEVNRATKLLSRMDR 376
Query: 377 NENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMH-MLP 435
+ + + +++ + A + W+ M E T +++ GL L
Sbjct: 377 TKCLPDRHTYNMVLKLLIRIGRFDRATEIWEGMSERKFYPTVATYTVMIHGLVRKKGKLE 436
Query: 436 EAVKYAKGMAEKGIQVTPFALSKLKQILI 464
EA +Y + M ++GI + L+ L+
Sbjct: 437 EACRYFEMMIDEGIPPYSTTVEMLRNRLV 465
>sp|Q9S7R4|PP125_ARATH Pentatricopeptide repeat-containing protein At1g74900,
mitochondrial OS=Arabidopsis thaliana GN=OTP43 PE=2 SV=1
Length = 482
Score = 130 bits (326), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 109/457 (23%), Positives = 195/457 (42%), Gaps = 26/457 (5%)
Query: 36 PPTIKTLCEIIANTPSPTVED---VLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSA 92
P + ++I ++P+ T +D +L + V VLK ++H A++FF +
Sbjct: 22 PADSAAIAKLILSSPNTTHQDDQFLLSTKTTPWTPNLVNSVLKRLWNHGPKALQFFHF-- 79
Query: 93 YQLNDKHSPY-----AWNLVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASVFSSYV 146
L++ H Y +++L +D+ + L +W I M+ + S TFA V Y
Sbjct: 80 --LDNHHREYVHDASSFDLAIDIAARLHLHPTVWSLIHRMRSLRIGPSPKTFAIVAERYA 137
Query: 147 VADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDT 206
A + A+ F M ++GC D+ + N++L +C+ + A++ R + GR D T
Sbjct: 138 SAGKPDKAVKLFLNMHEHGCFQDLASFNTILDVLCKSKRVEKAYELFRALRGRFSVDTVT 197
Query: 207 YAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG---CDGIYETVN 263
Y ++L GW + A + EMV E G +P N+ Y+ T+LKG I
Sbjct: 198 YNVILNGWCLIKRTPKALEVLKEMV-ERGINP-NLTTYN----TMLKGFFRAGQIRHAWE 251
Query: 264 SLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLY 323
M +R C + + ++ A ++ M+ R G P YN MI +
Sbjct: 252 FFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFDEMI-REGVLPSVATYNAMIQVL 310
Query: 324 CYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNH 383
C + A+ + +EMV G P++ TYN+L L + L M N
Sbjct: 311 CKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQRMENEGCEPNF 370
Query: 384 ENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAK- 442
+ +R Y + + A+ ++ M C +T N+L++G+ + V K
Sbjct: 371 QTYNMMIRYYSECSEVEKALGLFEKMGSGDCLPNLDTYNILISGMFVRKRSEDMVVAGKL 430
Query: 443 --GMAEKGIQVTPFALSKLKQILIKARKEAVYEELLK 477
M E+G F +++ L+ +A +E+L+
Sbjct: 431 LLEMVERGFIPRKFTFNRVLNGLLLTGNQAFAKEILR 467
>sp|Q9LUJ4|PP248_ARATH Pentatricopeptide repeat-containing protein At3g22670,
mitochondrial OS=Arabidopsis thaliana GN=At3g22670 PE=2
SV=1
Length = 562
Score = 121 bits (303), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 115/431 (26%), Positives = 189/431 (43%), Gaps = 35/431 (8%)
Query: 39 IKTLCEIIANTPSPTVEDV---LDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQL 95
I +C+ + N + EDV L K + V++ V QVL+ + A FF W+ Q
Sbjct: 102 IDKVCDFL-NKKDTSHEDVVKELSKCDVVVTESLVLQVLRRFSNGWNQAYGFFIWANSQT 160
Query: 96 NDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKK---ENVLSLATFASVFSSYVVADRVK 152
HS + +N +VD+LGK FD MW+ + M K +++L T + V + +
Sbjct: 161 GYVHSGHTYNAMVDVLGKCRNFDLMWELVNEMNKNEESKLVTLDTMSKVMRRLAKSGKYN 220
Query: 153 DAITTFDVMEQ-YGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAIL 210
A+ F ME+ YG K D A+NSL+ A+ ++ A + FL++ D IKPD T+ IL
Sbjct: 221 KAVDAFLEMEKSYGVKTDTIAMNSLMDALVKENSIEHAHEVFLKLFDT-IKPDARTFNIL 279
Query: 211 LEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNS-LKRMM 269
+ G+ K R +A+ M + + PD V Y S++ K +G + VN L+ M
Sbjct: 280 IHGFCKARKFDDARAMMDLMKV-TEFTPD-VVTYTSFVEAYCK--EGDFRRVNEMLEEMR 335
Query: 270 ERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNET 329
E GCNP + + + + + A ++ M G PD Y+ +I + +
Sbjct: 336 ENGCNPNVVTYTIVMHSLGKSKQVAEALGVYEKM-KEDGCVPDAKFYSSLIHILSKTGRF 394
Query: 330 GAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAA 389
A ++ ++M G D+ YN + + + A L M E E+C
Sbjct: 395 KDAAEIFEDMTNQGVRRDVLVYNTMISAALHHSRDEMALRLLKRMEDEEG----ESCSPN 450
Query: 390 VRVYMDSDDPYVAIK-----------FWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAV 438
V Y P + + +M++N S T LL+ GLC + EA
Sbjct: 451 VETYA----PLLKMCCHKKKMKLLGILLHHMVKNDVSIDVSTYILLIRGLCMSGKVEEAC 506
Query: 439 KYAKGMAEKGI 449
+ + KG+
Sbjct: 507 LFFEEAVRKGM 517
>sp|Q9M8W9|PP211_ARATH Pentatricopeptide repeat-containing protein At3g04130,
mitochondrial OS=Arabidopsis thaliana GN=At3g04130 PE=2
SV=2
Length = 508
Score = 115 bits (289), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 81/331 (24%), Positives = 139/331 (41%), Gaps = 35/331 (10%)
Query: 84 AVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFS 143
A+ +W+ KHS A+++ VD+LGK +D M + ++ M+ + +++L T A +
Sbjct: 104 ALGILKWAESCKGHKHSSDAYDMAVDILGKAKKWDRMKEFVERMRGDKLVTLNTVAKIMR 163
Query: 144 SYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPD 203
+ A ++A+ FD + ++G + + ++N LL +C++ + A L + I P+
Sbjct: 164 RFAGAGEWEEAVGIFDRLGEFGLEKNTESMNLLLDTLCKEKRVEQARVVLLQLKSHITPN 223
Query: 204 NDTYAILLEGWEKERDVANAKKTFGEMV-------------------------------- 231
T+ I + GW K V A T EM
Sbjct: 224 AHTFNIFIHGWCKANRVEEALWTIQEMKGHGFRPCVISYTTIIRCYCQQFEFIKVYEMLS 283
Query: 232 -IEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTG 290
+E P N Y + +++ L E + RM GC P F+
Sbjct: 284 EMEANGSPPNSITYTT-IMSSLNAQKEFEEALRVATRMKRSGCKPDSLFYNCLIHTLARA 342
Query: 291 QNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEM-VYNGAFPDIQ 349
L AE ++ + +G +T YN MI++YC+ +E A++LL EM N PD+
Sbjct: 343 GRLEEAERVFRVEMPELGVSINTSTYNSMIAMYCHHDEEDKAIELLKEMESSNLCNPDVH 402
Query: 350 TYNILFEFLVKGRKLWEASGLFNEMVKNENV 380
TY L K + E L EMV ++
Sbjct: 403 TYQPLLRSCFKRGDVVEVGKLLKEMVTKHHL 433
>sp|Q9FZ19|PPR5_ARATH Putative pentatricopeptide repeat-containing protein At1g02420
OS=Arabidopsis thaliana GN=At1g02420 PE=3 SV=2
Length = 491
Score = 113 bits (282), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 105/432 (24%), Positives = 201/432 (46%), Gaps = 15/432 (3%)
Query: 54 VEDVLDKTLIRVSQETVEQVLK---FSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDL 110
+++ L + I +S++ +++VLK FS+ +P ++F+R+++ HS ++ + ++ +
Sbjct: 58 LKESLSSSGIHLSKDLIDRVLKRVRFSHGNPIQTLEFYRYASAIRGFYHSSFSLDTMLYI 117
Query: 111 LGKNCLFDAMWDAIKSMKKEN--VLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKH 168
LG+N FD +W+ + K+++ ++S T V V+ + +F ++
Sbjct: 118 LGRNRKFDQIWELLIETKRKDRSLISPRTMQVVLGRVAKLCSVRQTVESFWKFKRLVPDF 177
Query: 169 -DVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTF 227
D N+LL +C++ DA + + +PD T+ ILL GW+ + +
Sbjct: 178 FDTACFNALLRTLCQEKSMTDARNVYHSLKHQFQPDLQTFNILLSGWKSSEEAEAFFEEM 237
Query: 228 GEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPG-MTFFKLAFEE 286
G PD V Y+S + K + I + + +M E P +T+ +
Sbjct: 238 KGK----GLKPD-VVTYNSLIDVYCKDRE-IEKAYKLIDKMREEEETPDVITYTTVIGGL 291
Query: 287 CLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFP 346
L GQ + E + + G PD YN I +C + G A KL+DEMV G P
Sbjct: 292 GLIGQPDKAREVL--KEMKEYGCYPDVAAYNAAIRNFCIARRLGDADKLVDEMVKKGLSP 349
Query: 347 DIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFW 406
+ TYN+ F L L + L+ M+ NE + N ++C ++++ + +A++ W
Sbjct: 350 NATTYNLFFRVLSLANDLGRSWELYVRMLGNECLPNTQSCMFLIKMFKRHEKVDMAMRLW 409
Query: 407 KYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKA 466
+ M+ S ++L+ LCD+ + EA K M EKG + + + ++K ++ A
Sbjct: 410 EDMVVKGFGSYSLVSDVLLDLLCDLAKVEEAEKCLLEMVEKGHRPSNVSFKRIKLLMELA 469
Query: 467 RKEAVYEELLKK 478
K L++K
Sbjct: 470 NKHDEVNNLIQK 481
>sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470,
mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2
SV=1
Length = 619
Score = 112 bits (280), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 100/363 (27%), Positives = 164/363 (45%), Gaps = 42/363 (11%)
Query: 122 DAIKSMKKENV-LSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAI 180
D + M++ N+ S+ ++ V S DA++ F+ ME G K DV +SL+ +
Sbjct: 231 DLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGL 290
Query: 181 CRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPD 239
C DGK D + LR + GR I PD T++ L++ + KE + AK+ + EM+ G PD
Sbjct: 291 CNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITR-GIAPD 349
Query: 240 NVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFI 299
+ Y+S + K + ++E M+ +GC P + + + + + +
Sbjct: 350 TI-TYNSLIDGFCKE-NCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRL 407
Query: 300 WGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLV 359
+ + + G P+T YN ++ +C S + AA +L EMV G P + TY IL + L
Sbjct: 408 FREISSK-GLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLC 466
Query: 360 KGRKLWEASGLFNEMVKNE--------NVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIE 411
+L +A +F +M K+ N++ H C A+ DD W
Sbjct: 467 DNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNAS-----KVDDA------WSL--- 512
Query: 412 NHCSDLSETG--------NLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQIL 463
CS LS+ G N+++ GLC L EA + M E G F + IL
Sbjct: 513 -FCS-LSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYN----IL 566
Query: 464 IKA 466
I+A
Sbjct: 567 IRA 569
Score = 92.0 bits (227), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 84/330 (25%), Positives = 146/330 (44%), Gaps = 9/330 (2%)
Query: 119 AMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLS 178
A+ D + MK+ L T +++ + + RV +A+ D M +YG + D +L+
Sbjct: 161 ALVDRMVEMKQRP--DLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLN 218
Query: 179 AICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWD 237
+C+ G + A R ++ R IK Y+I+++ K+ +A F EM E+
Sbjct: 219 RLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEM--EMKGI 276
Query: 238 PDNVPAYDSYLITLLKGCDGIYE-TVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGA 296
+V Y S + L DG ++ L+ M+ R P + F + + L A
Sbjct: 277 KADVVTYSSLIGGLCN--DGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEA 334
Query: 297 EFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFE 356
+ ++ M+ R G PDT YN +I +C N A ++ D MV G PDI TY+IL
Sbjct: 335 KELYNEMITR-GIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILIN 393
Query: 357 FLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSD 416
K +++ + LF E+ + N V + S A + ++ M+
Sbjct: 394 SYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPP 453
Query: 417 LSETGNLLVAGLCDMHMLPEAVKYAKGMAE 446
T +L+ GLCD L +A++ + M +
Sbjct: 454 SVVTYGILLDGLCDNGELNKALEIFEKMQK 483
Score = 70.5 bits (171), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/241 (24%), Positives = 106/241 (43%), Gaps = 9/241 (3%)
Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
T+ S+ + + + +A FD+M GC+ D+ + L+++ C+ + D + R +
Sbjct: 352 TYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREI 411
Query: 197 DGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
+ + P+ TY L+ G+ + + AK+ F EMV G P V +Y I L C
Sbjct: 412 SSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSR-GVPPSVV----TYGILLDGLC 466
Query: 256 DG--IYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDT 313
D + + + ++M + G+ + + + A ++ ++ + G +PD
Sbjct: 467 DNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDK-GVKPDV 525
Query: 314 HMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNE 373
YN+MI C A L +M +G PD TYNIL + G L + L E
Sbjct: 526 VTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELIEE 585
Query: 374 M 374
M
Sbjct: 586 M 586
Score = 65.9 bits (159), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 76/310 (24%), Positives = 131/310 (42%), Gaps = 7/310 (2%)
Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERD 219
ME G +HD++ + +++ CR K + A+ L R +PD T++ L+ G+ E
Sbjct: 96 MELNGIEHDMYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGR 155
Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPG-MT 278
V+ A MV E+ PD V S LI L + E + + RM+E G P +T
Sbjct: 156 VSEAVALVDRMV-EMKQRPDLVTV--STLINGLCLKGRVSEALVLIDRMVEYGFQPDEVT 212
Query: 279 FFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDE 338
+ + C +G + + ++ M R + Y+++I C A+ L +E
Sbjct: 213 YGPVLNRLCKSGNSALALD-LFRKMEER-NIKASVVQYSIVIDSLCKDGSFDDALSLFNE 270
Query: 339 MVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDD 398
M G D+ TY+ L L K + + + EM+ + + A + V++
Sbjct: 271 MEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGK 330
Query: 399 PYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSK 458
A + + MI + + T N L+ G C + L EA + M KG + S
Sbjct: 331 LLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSI 390
Query: 459 LKQILIKARK 468
L KA++
Sbjct: 391 LINSYCKAKR 400
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 61/271 (22%), Positives = 115/271 (42%), Gaps = 24/271 (8%)
Query: 103 AWNLVVDLLGK-NCLFDA--MWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFD 159
+N ++D K NCL +A M+D + S E + T++ + +SY A RV D + F
Sbjct: 352 TYNSLIDGFCKENCLHEANQMFDLMVSKGCEP--DIVTYSILINSYCKAKRVDDGMRLFR 409
Query: 160 VMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKER 218
+ G + N+L+ C+ GK A + F +V + P TY ILL+G
Sbjct: 410 EISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNG 469
Query: 219 DVANAKKTF-----GEMVIEVGWDPDNVPAYDSYLITLLKGCDG--IYETVNSLKRMMER 271
++ A + F M + +G Y I + C+ + + + + ++
Sbjct: 470 ELNKALEIFEKMQKSRMTLGIGI----------YNIIIHGMCNASKVDDAWSLFCSLSDK 519
Query: 272 GCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGA 331
G P + + + +L A+ ++ M G PD YN++I + + +
Sbjct: 520 GVKPDVVTYNVMIGGLCKKGSLSEADMLFRKM-KEDGCTPDDFTYNILIRAHLGGSGLIS 578
Query: 332 AMKLLDEMVYNGAFPDIQTYNILFEFLVKGR 362
+++L++EM G D T ++ + L R
Sbjct: 579 SVELIEEMKVCGFSADSSTIKMVIDMLSDRR 609
>sp|Q9FH87|PP447_ARATH Putative pentatricopeptide repeat-containing protein At5g65820
OS=Arabidopsis thaliana GN=At5g65820 PE=3 SV=1
Length = 637
Score = 109 bits (272), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 99/411 (24%), Positives = 172/411 (41%), Gaps = 7/411 (1%)
Query: 52 PTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLL 111
P +E L+++ + + +E+VL +FF W+A Q HS + +V +L
Sbjct: 98 PKLELALNESGVELRPGLIERVLNRCGDAGNLGYRFFVWAAKQPRYCHSIEVYKSMVKIL 157
Query: 112 GKNCLFDAMWDAIKSMKKEN--VLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHD 169
K F A+W I+ M+KEN ++ F + + AD VK AI D M ++G + D
Sbjct: 158 SKMRQFGAVWGLIEEMRKENPQLIEPELFVVLVQRFASADMVKKAIEVLDEMPKFGFEPD 217
Query: 170 VFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGE 229
+ LL A+C+ G DA + + R + + LL GW + + AK +
Sbjct: 218 EYVFGCLLDALCKHGSVKDAAKLFEDMRMRFPVNLRYFTSLLYGWCRVGKMMEAKYVLVQ 277
Query: 230 MVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLT 289
M E G++PD V + L++ + + + L+ M RG P + + +
Sbjct: 278 MN-EAGFEPDIVDYTN--LLSGYANAGKMADAYDLLRDMRRRGFEPNANCYTVLIQALCK 334
Query: 290 GQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQ 349
+ A ++ M R D Y ++S +C + +LD+M+ G P
Sbjct: 335 VDRMEEAMKVFVEM-ERYECEADVVTYTALVSGFCKWGKIDKCYIVLDDMIKKGLMPSEL 393
Query: 350 TYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYM 409
TY + K E L +M + E + +R+ + A++ W M
Sbjct: 394 TYMHIMVAHEKKESFEECLELMEKMRQIEYHPDIGIYNVVIRLACKLGEVKEAVRLWNEM 453
Query: 410 IENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI-QVTPFALSKL 459
EN S +T +++ GL L EA + K M +G+ V+ + KL
Sbjct: 454 EENGLSPGVDTFVIMINGLASQGCLLEASDHFKEMVTRGLFSVSQYGTLKL 504
>sp|Q9LPX2|PPR39_ARATH Pentatricopeptide repeat-containing protein At1g12775,
mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2
SV=1
Length = 644
Score = 107 bits (266), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 84/310 (27%), Positives = 150/310 (48%), Gaps = 11/310 (3%)
Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
+L T ++ + + +V DA+ D M + G + + +L+ +C+ G+T A + L
Sbjct: 192 TLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELL 251
Query: 194 RVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
R ++ R IK D Y+I+++G K+ + NA F EM I+ G+ D + Y+ TL+
Sbjct: 252 RKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIK-GFKAD-IITYN----TLI 305
Query: 253 KG-CDGIY--ETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGF 309
G C+ + L+ M++R +P + F + + + LR A+ + M+ R G
Sbjct: 306 GGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQR-GI 364
Query: 310 RPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASG 369
P+T YN +I +C N A++++D M+ G PDI T+NIL K ++ +
Sbjct: 365 APNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLE 424
Query: 370 LFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLC 429
LF EM + N V+ + S VA K ++ M+ + +L+ GLC
Sbjct: 425 LFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLC 484
Query: 430 DMHMLPEAVK 439
D L +A++
Sbjct: 485 DNGELEKALE 494
Score = 85.5 bits (210), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 82/339 (24%), Positives = 157/339 (46%), Gaps = 24/339 (7%)
Query: 121 WDAIKSMKKENV-LSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSA 179
+ ++ M++ N+ L ++ + + +A F+ ME G K D+ N+L+
Sbjct: 248 MELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGG 307
Query: 180 ICRDGKTIDAWQFLR-VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDP 238
C G+ D + LR ++ +I P+ T+++L++ + KE + A + EM ++ G P
Sbjct: 308 FCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEM-MQRGIAP 366
Query: 239 DNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPG-MTFFKLAFEECLTGQNLRGAE 297
+ + Y+S + K + + E + + M+ +GC+P MTF L C + G E
Sbjct: 367 NTI-TYNSLIDGFCKE-NRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLE 424
Query: 298 FIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEF 357
++ M R G +T YN ++ +C S + A KL EMV PDI +Y IL +
Sbjct: 425 -LFREMSLR-GVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDG 482
Query: 358 LVKGRKLWEASGLFNEMVKNENVLN--------HENCRAAVRVYMDSDDPYVAIKFWKYM 409
L +L +A +F ++ K++ L+ H C A+ D+ D + ++
Sbjct: 483 LCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNAS--KVDDAWDLFCSLPLKGVK 540
Query: 410 IENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448
++ + N++++ LC L +A + M E+G
Sbjct: 541 LD------ARAYNIMISELCRKDSLSKADILFRKMTEEG 573
Score = 81.3 bits (199), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 86/397 (21%), Positives = 170/397 (42%), Gaps = 7/397 (1%)
Query: 84 AVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVF 142
AV FR Q + +N + + K ++ + K M+ + + S+ T + +
Sbjct: 72 AVDLFR-DMIQSRPLPTVIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLSIMI 130
Query: 143 SSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIK 201
+ + ++ A +T + + G + D N+LL+ +C + + +A + + R+V+ K
Sbjct: 131 NCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHK 190
Query: 202 PDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYET 261
P T L+ G V++A MV E G+ P+ V Y L + K
Sbjct: 191 PTLITLNTLVNGLCLNGKVSDAVVLIDRMV-ETGFQPNEV-TYGPVLNVMCKSGQTAL-A 247
Query: 262 VNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMIS 321
+ L++M ER + + + +L A ++ M + GF+ D YN +I
Sbjct: 248 MELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIK-GFKADIITYNTLIG 306
Query: 322 LYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVL 381
+C + KLL +M+ P++ T+++L + VK KL EA L EM++
Sbjct: 307 GFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAP 366
Query: 382 NHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYA 441
N + + + + AI+ MI C T N+L+ G C + + + ++
Sbjct: 367 NTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELF 426
Query: 442 KGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKK 478
+ M+ +G+ + L Q ++ K V ++L ++
Sbjct: 427 REMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQE 463
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 87/344 (25%), Positives = 145/344 (42%), Gaps = 42/344 (12%)
Query: 142 FSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-I 200
SS +V + DA+ F M Q V N L SAI + + + ++ + I
Sbjct: 60 LSSGLVGIKADDAVDLFRDMIQSRPLPTVIDFNRLFSAIAKTKQYELVLALCKQMESKGI 119
Query: 201 KPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYE 260
T +I++ + + R ++ A T G+ ++++G++PD V +++ L L C + E
Sbjct: 120 AHSIYTLSIMINCFCRCRKLSYAFSTMGK-IMKLGYEPDTV-IFNTLLNGLCLECR-VSE 176
Query: 261 TVNSLKRMMERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMM 319
+ + RM+E G P + T L CL G+ + A + MV GF+P+ Y +
Sbjct: 177 ALELVDRMVEMGHKPTLITLNTLVNGLCLNGK-VSDAVVLIDRMV-ETGFQPNEVTYGPV 234
Query: 320 ISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM----- 374
+++ C S +T AM+LL +M D Y+I+ + L K L A LFNEM
Sbjct: 235 LNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGF 294
Query: 375 ---VKNENVLNHENCRAA--------------------VRVYMDSDDPYV-------AIK 404
+ N L C A V + D +V A +
Sbjct: 295 KADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQ 354
Query: 405 FWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448
K M++ + + T N L+ G C + L EA++ M KG
Sbjct: 355 LLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKG 398
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/241 (24%), Positives = 103/241 (42%), Gaps = 9/241 (3%)
Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
T+ S+ + +R+++AI D+M GC D+ N L++ C+ + D + R +
Sbjct: 370 TYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREM 429
Query: 197 DGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
R + + TY L++G+ + + AKK F EMV PD V SY I L C
Sbjct: 430 SLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSR-RVRPDIV----SYKILLDGLC 484
Query: 256 DG--IYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDT 313
D + + + ++ + + + + + A ++ ++ + G + D
Sbjct: 485 DNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLK-GVKLDA 543
Query: 314 HMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNE 373
YN+MIS C + A L +M G PD TYNIL + A+ L E
Sbjct: 544 RAYNIMISELCRKDSLSKADILFRKMTEEGHAPDELTYNILIRAHLGDDDATTAAELIEE 603
Query: 374 M 374
M
Sbjct: 604 M 604
Score = 62.4 bits (150), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 56/238 (23%), Positives = 102/238 (42%), Gaps = 25/238 (10%)
Query: 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FL 193
+ TF + + Y A+R+ D + F M G + N+L+ C+ GK A + F
Sbjct: 403 IMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQ 462
Query: 194 RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGE-----MVIEVGWDPDNVPAYDSYL 248
+V R++PD +Y ILL+G ++ A + FG+ M +++G Y+
Sbjct: 463 EMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGI----------YM 512
Query: 249 ITLLKGC-----DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAM 303
I + C D ++ SL +G + + E +L A+ ++ M
Sbjct: 513 IIIHGMCNASKVDDAWDLFCSLPL---KGVKLDARAYNIMISELCRKDSLSKADILFRKM 569
Query: 304 VGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKG 361
G PD YN++I + ++ A +L++EM +G D+ T ++ L G
Sbjct: 570 TEE-GHAPDELTYNILIRAHLGDDDATTAAELIEEMKSSGFPADVSTVKMVINMLSSG 626
>sp|P0C8A0|PP275_ARATH Pentatricopeptide repeat-containing protein At3g49730
OS=Arabidopsis thaliana GN=At3g49730 PE=2 SV=1
Length = 638
Score = 105 bits (263), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 100/423 (23%), Positives = 174/423 (41%), Gaps = 15/423 (3%)
Query: 39 IKTLCEIIANTPS--PTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLN 96
++ + I+ N S P +E L+++ I + + +VL +FF W+ Q
Sbjct: 67 VEKIYRILRNHHSRVPKLELALNESGIDLRPGLIIRVLSRCGDAGNLGYRFFLWATKQPG 126
Query: 97 DKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKEN--VLSLATFASVFSSYVVADRVKDA 154
HS +V +L K F A+W I+ M+K N ++ F + + A+ VK A
Sbjct: 127 YFHSYEVCKSMVMILSKMRQFGAVWGLIEEMRKTNPELIEPELFVVLMRRFASANMVKKA 186
Query: 155 ITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGW 214
+ D M +YG + D + LL A+C++G +A + + + P+ + LL GW
Sbjct: 187 VEVLDEMPKYGLEPDEYVFGCLLDALCKNGSVKEASKVFEDMREKFPPNLRYFTSLLYGW 246
Query: 215 EKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG---CDGIYETVNSLKRMMER 271
+E + AK+ +M E G +PD V LL G + + + + M +R
Sbjct: 247 CREGKLMEAKEVLVQMK-EAGLEPDIV-----VFTNLLSGYAHAGKMADAYDLMNDMRKR 300
Query: 272 GCNPGMTFFKLAFEE-CLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETG 330
G P + + + + C T + + A ++ M R G D Y +IS +C
Sbjct: 301 GFEPNVNCYTVLIQALCRTEKRMDEAMRVFVEM-ERYGCEADIVTYTALISGFCKWGMID 359
Query: 331 AAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAV 390
+LD+M G P TY + K + E L +M + + +
Sbjct: 360 KGYSVLDDMRKKGVMPSQVTYMQIMVAHEKKEQFEECLELIEKMKRRGCHPDLLIYNVVI 419
Query: 391 RVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQ 450
R+ + A++ W M N S +T +++ G L EA + K M +GI
Sbjct: 420 RLACKLGEVKEAVRLWNEMEANGLSPGVDTFVIMINGFTSQGFLIEACNHFKEMVSRGIF 479
Query: 451 VTP 453
P
Sbjct: 480 SAP 482
>sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700,
chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1
Length = 754
Score = 102 bits (255), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 93/350 (26%), Positives = 158/350 (45%), Gaps = 9/350 (2%)
Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RV 195
TF ++ + A VK AI DVM Q G DV+ NS++S +C+ G+ +A + L ++
Sbjct: 297 TFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQM 356
Query: 196 VDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
+ P+ TY L+ KE V A + ++ G PD V ++S LI L
Sbjct: 357 ITRDCSPNTVTYNTLISTLCKENQVEEATE-LARVLTSKGILPD-VCTFNS-LIQGLCLT 413
Query: 256 DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHM 315
+ + M +GC P + + + + L A + M G
Sbjct: 414 RNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQM-ELSGCARSVIT 472
Query: 316 YNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
YN +I +C +N+T A ++ DEM +G + TYN L + L K R++ +A+ L ++M+
Sbjct: 473 YNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMI 532
Query: 376 KNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLP 435
+ + + + D A + M N C T L++GLC +
Sbjct: 533 MEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVE 592
Query: 436 EAVKYAKGMAEKGIQVTPFALSKLKQILIKARK--EAV--YEELLKKCKA 481
A K + + KGI +TP A + + Q L + RK EA+ + E+L++ +A
Sbjct: 593 VASKLLRSIQMKGINLTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEA 642
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 101/441 (22%), Positives = 180/441 (40%), Gaps = 49/441 (11%)
Query: 84 AVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASVF 142
A++ F ++ + N P + ++ LG++ FD M ++ MK + +TF +
Sbjct: 66 ALRLFNLASKKPNFSPEPALYEEILLRLGRSGSFDDMKKILEDMKSSRCEMGTSTFLILI 125
Query: 143 SSYVVADRVKDAITTFD------------------------------------VMEQYGC 166
SY + + ++ D M +G
Sbjct: 126 ESYAQFELQDEILSVVDWMIDEFGLKPDTHFYNRMLNLLVDGNSLKLVEISHAKMSVWGI 185
Query: 167 KHDVFALNSLLSAICRDGKTIDAWQFLRVVDG-RIKPDNDTYAILLEGWEKERDVANAKK 225
K DV N L+ A+CR + A L + + PD T+ +++G+ +E D+ A +
Sbjct: 186 KPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALR 245
Query: 226 TFGEMVIEVGWDPDNVPAYDSYLITLLKGC-DG-IYETVNSLKRMMER-GCNPGM-TFFK 281
+MV E G NV S + + C +G + + +N ++ M + G P TF
Sbjct: 246 IREQMV-EFGCSWSNV----SVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNT 300
Query: 282 LAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVY 341
L C G +++ A I M+ G+ PD + YN +IS C E A+++LD+M+
Sbjct: 301 LVNGLCKAG-HVKHAIEIMDVMLQE-GYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMIT 358
Query: 342 NGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYV 401
P+ TYN L L K ++ EA+ L + + + + ++ + + V
Sbjct: 359 RDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRV 418
Query: 402 AIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQ 461
A++ ++ M C T N+L+ LC L EA+ K M G + + L
Sbjct: 419 AMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLID 478
Query: 462 ILIKARKEAVYEELLKKCKAH 482
KA K EE+ + + H
Sbjct: 479 GFCKANKTREAEEIFDEMEVH 499
Score = 80.1 bits (196), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 87/350 (24%), Positives = 143/350 (40%), Gaps = 42/350 (12%)
Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
T+ SV S VK+A+ D M C + N+L+S +C++ + +A + RV+
Sbjct: 332 TYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVL 391
Query: 197 DGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
+ I PD T+ L++G R+ A + F EM + G +PD Y+ LI L
Sbjct: 392 TSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSK-GCEPDEF-TYN-MLIDSLCSK 448
Query: 256 DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAM----VGR----- 306
+ E +N LK+M GC + + + R AE I+ M V R
Sbjct: 449 GKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTY 508
Query: 307 -------------------------IGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVY 341
G +PD + YN +++ +C + A ++ M
Sbjct: 509 NTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTS 568
Query: 342 NGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM-VKNENVLNHENCRAAVRVYMDSDDPY 400
NG PDI TY L L K ++ AS L + +K N+ H ++
Sbjct: 569 NGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPHAY-NPVIQGLFRKRKTT 627
Query: 401 VAIKFWKYMIE-NHCSDLSETGNLLVAGLCDMHM-LPEAVKYAKGMAEKG 448
AI ++ M+E N + + ++ GLC+ + EAV + + EKG
Sbjct: 628 EAINLFREMLEQNEAPPDAVSYRIVFRGLCNGGGPIREAVDFLVELLEKG 677
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 82/350 (23%), Positives = 141/350 (40%), Gaps = 8/350 (2%)
Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVM 161
+N ++ L K + + + + + +L + TF S+ + + A+ F+ M
Sbjct: 367 TYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEM 426
Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVD-GRIKPDNDTYAILLEGWEKERDV 220
GC+ D F N L+ ++C GK +A L+ ++ TY L++G+ K
Sbjct: 427 RSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKT 486
Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFF 280
A++ F EM EV N Y++ + L K + + + +M+ G P +
Sbjct: 487 REAEEIFDEM--EVHGVSRNSVTYNTLIDGLCKS-RRVEDAAQLMDQMIMEGQKPDKYTY 543
Query: 281 KLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMV 340
G +++ A I AM G PD Y +IS C + A KLL +
Sbjct: 544 NSLLTHFCRGGDIKKAADIVQAMTSN-GCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQ 602
Query: 341 YNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV-KNENVLNHENCRAAVRVYMDSDDP 399
G YN + + L + RK EA LF EM+ +NE + + R R + P
Sbjct: 603 MKGINLTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAPPDAVSYRIVFRGLCNGGGP 662
Query: 400 YV-AIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448
A+ F ++E + +L GL + M VK + +K
Sbjct: 663 IREAVDFLVELLEKGFVPEFSSLYMLAEGLLTLSMEETLVKLVNMVMQKA 712
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/244 (23%), Positives = 112/244 (45%), Gaps = 14/244 (5%)
Query: 210 LLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPA-YDSYLITLLKGCDGIYETVNS-LKR 267
LL+ + D + A + F + + P+ PA Y+ L+ L G G ++ + L+
Sbjct: 53 LLDSLRSQPDDSAALRLFNLASKKPNFSPE--PALYEEILLRL--GRSGSFDDMKKILED 108
Query: 268 MMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSN 327
M C G + F + E + + M+ G +PDTH YN M++L
Sbjct: 109 MKSSRCEMGTSTFLILIESYAQFELQDEILSVVDWMIDEFGLKPDTHFYNRMLNLLV--- 165
Query: 328 ETGAAMKLLD----EMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNH 383
G ++KL++ +M G PD+ T+N+L + L + +L A + +M V +
Sbjct: 166 -DGNSLKLVEISHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDE 224
Query: 384 ENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKG 443
+ ++ Y++ D A++ + M+E CS + + N++V G C + +A+ + +
Sbjct: 225 KTFTTVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQE 284
Query: 444 MAEK 447
M+ +
Sbjct: 285 MSNQ 288
>sp|Q0WKV3|PPR36_ARATH Pentatricopeptide repeat-containing protein At1g12300,
mitochondrial OS=Arabidopsis thaliana GN=At1g12300 PE=2
SV=1
Length = 637
Score = 102 bits (253), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 79/300 (26%), Positives = 141/300 (47%), Gaps = 11/300 (3%)
Query: 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR 194
L T ++ + ++ + +A+ D M +YGC+ + +L+ +C+ G+T A + LR
Sbjct: 193 LITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLR 252
Query: 195 VVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLK 253
++ R IK D Y+I+++G K + NA F EM E+ N+ Y+ L+
Sbjct: 253 KMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEM--EMKGITTNIITYN----ILIG 306
Query: 254 G-CDGIY--ETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFR 310
G C+ + L+ M++R NP + F + + + LR AE + M+ R G
Sbjct: 307 GFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHR-GIA 365
Query: 311 PDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGL 370
PDT Y +I +C N A +++D MV G P+I+T+NIL K ++ + L
Sbjct: 366 PDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLEL 425
Query: 371 FNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCD 430
F +M V + ++ + + VA + ++ M+ T +L+ GLCD
Sbjct: 426 FRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCD 485
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 79/385 (20%), Positives = 156/385 (40%), Gaps = 47/385 (12%)
Query: 99 HSPYAWNLVVDLLG---KNCL-FDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDA 154
H+ Y +++++ K CL F AM IK + N + TF+++ + + RV +A
Sbjct: 121 HNLYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTI---TFSTLINGLCLEGRVSEA 177
Query: 155 ITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEG 213
+ D M + G K D+ +N+L++ +C GK +A + ++V+ +P+ TY +L
Sbjct: 178 LELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNV 237
Query: 214 WEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGC 273
K A A + L++M ER
Sbjct: 238 MCKSGQTALAMEL--------------------------------------LRKMEERNI 259
Query: 274 NPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAM 333
+ + + +L A ++ M + G + YN++I +C +
Sbjct: 260 KLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMK-GITTNIITYNILIGGFCNAGRWDDGA 318
Query: 334 KLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVY 393
KLL +M+ P++ T+++L + VK KL EA L EM+ + + + +
Sbjct: 319 KLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGF 378
Query: 394 MDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTP 453
+ A + M+ C T N+L+ G C + + + ++ + M+ +G+
Sbjct: 379 CKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADT 438
Query: 454 FALSKLKQILIKARKEAVYEELLKK 478
+ L Q + K V +EL ++
Sbjct: 439 VTYNTLIQGFCELGKLNVAKELFQE 463
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 68/291 (23%), Positives = 126/291 (43%), Gaps = 16/291 (5%)
Query: 120 MWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSA 179
+ D IK NV+ TF+ + S+V ++++A M G D SL+
Sbjct: 321 LRDMIKRKINPNVV---TFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDG 377
Query: 180 ICRDGKTIDAWQFLRV-VDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDP 238
C++ A Q + + V P+ T+ IL+ G+ K + + + F +M + G
Sbjct: 378 FCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLR-GVVA 436
Query: 239 DNVPAYDSYLITLLKG-CD-GIYETVNSL-KRMMERGCNPGMTFFKLAFEE-CLTGQNLR 294
D V Y+ TL++G C+ G L + M+ R P + +K+ + C G++ +
Sbjct: 437 DTV-TYN----TLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEK 491
Query: 295 GAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNIL 354
E + + D +YN++I C +++ A L + G P ++TYNI+
Sbjct: 492 ALEIF--EKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIM 549
Query: 355 FEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKF 405
L K L EA LF +M ++ + + +R ++ D ++K
Sbjct: 550 IGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKL 600
Score = 56.2 bits (134), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 55/232 (23%), Positives = 98/232 (42%), Gaps = 9/232 (3%)
Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-F 192
++ TF + + Y A+R+ D + F M G D N+L+ C GK A + F
Sbjct: 402 NIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELF 461
Query: 193 LRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
+V ++ P+ TY ILL+G + A + F + IE ++ Y+ + +
Sbjct: 462 QEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEK--IEKSKMELDIGIYNIIIHGMC 519
Query: 253 KG--CDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFR 310
D ++ SL +G PG+ + + L AE ++ M G
Sbjct: 520 NASKVDDAWDLFCSLPL---KGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKM-EEDGHA 575
Query: 311 PDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGR 362
PD YN++I + + ++KL++E+ G D T ++ + L GR
Sbjct: 576 PDGWTYNILIRAHLGDGDATKSVKLIEELKRCGFSVDASTIKMVIDMLSDGR 627
>sp|Q9CAM8|PP100_ARATH Pentatricopeptide repeat-containing protein At1g63150
OS=Arabidopsis thaliana GN=At1g63150 PE=2 SV=1
Length = 629
Score = 101 bits (252), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 85/333 (25%), Positives = 147/333 (44%), Gaps = 5/333 (1%)
Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
TF ++ + ++ +A+ D M Q GC+ D+ ++++ +C+ G A L +
Sbjct: 190 TFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALNLLNKM 249
Query: 197 DG-RIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
+ RIK + + +++ K R V A F EM + G P NV Y+S LI L
Sbjct: 250 EAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETK-GIRP-NVVTYNS-LINCLCNY 306
Query: 256 DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHM 315
+ L M+E+ NP + F + L AE + M+ R PDT
Sbjct: 307 GRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQR-SIDPDTIT 365
Query: 316 YNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
YN++I+ +C N A ++ MV P+IQTYN L K +++ + LF EM
Sbjct: 366 YNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVEDGVELFREMS 425
Query: 376 KNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLP 435
+ V N ++ + + D A +K M+ N T ++L+ GLC L
Sbjct: 426 QRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQMVSNRVPTDIMTYSILLHGLCSYGKLD 485
Query: 436 EAVKYAKGMAEKGIQVTPFALSKLKQILIKARK 468
A+ K + + +++ F + + + + KA K
Sbjct: 486 TALVIFKYLQKSEMELNIFIYNTMIEGMCKAGK 518
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 76/319 (23%), Positives = 136/319 (42%), Gaps = 13/319 (4%)
Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
S+ F + S+ ++ + I+ + M+ G HD++ + ++ CR + A L
Sbjct: 82 SIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAVL 141
Query: 194 -RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
+++ +PD T + LL G+ + +++A +MV E+G+ PD TL+
Sbjct: 142 AKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMV-EMGYKPDTFT-----FTTLI 195
Query: 253 KGC---DGIYETVNSLKRMMERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIG 308
G + E V + +M++RGC P + T+ + C G + RI
Sbjct: 196 HGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALNLLNKMEAARI- 254
Query: 309 FRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEAS 368
+ + ++N +I C A+ L EM G P++ TYN L L + +AS
Sbjct: 255 -KANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDAS 313
Query: 369 GLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGL 428
L + M++ + N A + + A K + MI+ + T NLL+ G
Sbjct: 314 RLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGF 373
Query: 429 CDMHMLPEAVKYAKGMAEK 447
C + L EA + K M K
Sbjct: 374 CMHNRLDEAKQMFKFMVSK 392
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 73/351 (20%), Positives = 132/351 (37%), Gaps = 48/351 (13%)
Query: 98 KHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAIT 156
K + +N ++D L K + D M+ + + ++ T+ S+ + R DA
Sbjct: 255 KANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASR 314
Query: 157 TFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYAILLEGWE 215
M + +V N+L+ A ++GK ++A + ++ I PD TY +L+ G+
Sbjct: 315 LLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFC 374
Query: 216 KERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG---CDGIYETVNSLKRMMERG 272
+ AK+ F MV D +P +Y TL+ G C + + V + M +RG
Sbjct: 375 MHNRLDEAKQMFKFMV-----SKDCLPNIQTY-NTLINGFCKCKRVEDGVELFREMSQRG 428
Query: 273 CNPGMTFFKLAFEECLTGQNLRGAEFIWGAMV---------------------GRIG--- 308
+ + + A+ ++ MV G++
Sbjct: 429 LVGNTVTYTTIIQGFFQAGDCDSAQMVFKQMVSNRVPTDIMTYSILLHGLCSYGKLDTAL 488
Query: 309 ----------FRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFL 358
+ +YN MI C + + G A L + PD+ TYN + L
Sbjct: 489 VIFKYLQKSEMELNIFIYNTMIEGMCKAGKVGEAWDLFCSLSIK---PDVVTYNTMISGL 545
Query: 359 VKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYM 409
R L EA LF +M ++ + N +R + D + + K M
Sbjct: 546 CSKRLLQEADDLFRKMKEDGTLPNSGTYNTLIRANLRDCDRAASAELIKEM 596
Score = 38.9 bits (89), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 35/178 (19%), Positives = 70/178 (39%)
Query: 301 GAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVK 360
G + +G D + Y++ I+ +C ++ A+ +L +M+ G PDI T + L
Sbjct: 106 GEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCH 165
Query: 361 GRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSET 420
+++ +A L ++MV+ + + + A+ M++ C T
Sbjct: 166 SKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVT 225
Query: 421 GNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKK 478
+V GLC + A+ M I+ + + L K R V +L +
Sbjct: 226 YGTVVNGLCKRGDIDLALNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTE 283
>sp|Q9LFM6|PP375_ARATH Pentatricopeptide repeat-containing protein At5g11310,
mitochondrial OS=Arabidopsis thaliana GN=At5g11310 PE=2
SV=1
Length = 602
Score = 99.8 bits (247), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 105/428 (24%), Positives = 173/428 (40%), Gaps = 24/428 (5%)
Query: 38 TIKTLCEIIANTPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLND 97
TI L E P ++E LD+T I S E V + S P F+W+ +
Sbjct: 72 TISNLLENTDVVPGSSLESALDETGIEPSVELVHALFDRLSSSPMLLHSVFKWAEMKPGF 131
Query: 98 KHSPYAWNLVVDLLGKNCLFDAMW----DAIKSMKKENVLSLATFASVFSSYVVADRVKD 153
SP ++ VV+ L K F+ W D ++S + N++S TF + Y A V+
Sbjct: 132 TLSPSLFDSVVNSLCKAREFEIAWSLVFDRVRSDEGSNLVSADTFIVLIRRYARAGMVQQ 191
Query: 154 AITTFDVMEQYG--CKH--DVFALNSLLSAICRDGKTIDAWQFLRVVDGRIK----PDND 205
AI F+ Y CK ++ L LL A+C++G +A +L + G + P
Sbjct: 192 AIRAFEFARSYEPVCKSATELRLLEVLLDALCKEGHVREASMYLERIGGTMDSNWVPSVR 251
Query: 206 TYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG-CDGIYETVNS 264
+ ILL GW + R + A+K + EM NV TL++G C V
Sbjct: 252 IFNILLNGWFRSRKLKQAEKLWEEM------KAMNVKPTVVTYGTLIEGYCR--MRRVQI 303
Query: 265 LKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGF---RPDTHMYNMMIS 321
++E M + F + G G M+ R P YN ++
Sbjct: 304 AMEVLEEMKMAEMEINFMVFNPIIDGLGEAGRLSEALGMMERFFVCESGPTIVTYNSLVK 363
Query: 322 LYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVL 381
+C + + A K+L M+ G P TYN F++ K K E L+ ++++ +
Sbjct: 364 NFCKAGDLPGASKILKMMMTRGVDPTTTTYNHFFKYFSKHNKTEEGMNLYFKLIEAGHSP 423
Query: 382 NHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYA 441
+ +++ + +A++ K M T +L+ LC + ML EA +
Sbjct: 424 DRLTYHLILKMLCEDGKLSLAMQVNKEMKNRGIDPDLLTTTMLIHLLCRLEMLEEAFEEF 483
Query: 442 KGMAEKGI 449
+GI
Sbjct: 484 DNAVRRGI 491
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/238 (21%), Positives = 96/238 (40%), Gaps = 7/238 (2%)
Query: 118 DAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLL 177
+ +W+ +K+M + ++ T+ ++ Y RV+ A+ + M+ + + N ++
Sbjct: 270 EKLWEEMKAMNVKP--TVVTYGTLIEGYCRMRRVQIAMEVLEEMKMAEMEINFMVFNPII 327
Query: 178 SAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGW 236
+ G+ +A + R P TY L++ + K D+ A K +M++ G
Sbjct: 328 DGLGEAGRLSEALGMMERFFVCESGPTIVTYNSLVKNFCKAGDLPGASKIL-KMMMTRGV 386
Query: 237 DPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGA 296
DP Y+ + K + E +N +++E G +P + L + L A
Sbjct: 387 DPTTT-TYNHFFKYFSKH-NKTEEGMNLYFKLIEAGHSPDRLTYHLILKMLCEDGKLSLA 444
Query: 297 EFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNIL 354
+ M R G PD M+I L C A + D V G P T+ ++
Sbjct: 445 MQVNKEMKNR-GIDPDLLTTTMLIHLLCRLEMLEEAFEEFDNAVRRGIIPQYITFKMI 501
Score = 36.2 bits (82), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 55/142 (38%)
Query: 311 PDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGL 370
P ++N++++ + S + A KL +EM P + TY L E + R++ A +
Sbjct: 248 PSVRIFNILLNGWFRSRKLKQAEKLWEEMKAMNVKPTVVTYGTLIEGYCRMRRVQIAMEV 307
Query: 371 FNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCD 430
EM E +N + ++ A+ + T N LV C
Sbjct: 308 LEEMKMAEMEINFMVFNPIIDGLGEAGRLSEALGMMERFFVCESGPTIVTYNSLVKNFCK 367
Query: 431 MHMLPEAVKYAKGMAEKGIQVT 452
LP A K K M +G+ T
Sbjct: 368 AGDLPGASKILKMMMTRGVDPT 389
>sp|P0C7Q7|PPR38_ARATH Putative pentatricopeptide repeat-containing protein At1g12700,
mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3
SV=1
Length = 602
Score = 99.4 bits (246), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 88/346 (25%), Positives = 154/346 (44%), Gaps = 12/346 (3%)
Query: 99 HSPYAWNLVVDLLGKNCLFDAMWDAI-KSMKKENVLSLATFASVFSSYVVADRVKDAITT 157
H+ Y N++++ + C + + K MK TF ++ + +V +A+
Sbjct: 121 HNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVL 180
Query: 158 FDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEK 216
D M + GC+ DV NS+++ ICR G T A LR ++ R +K D TY+ +++ +
Sbjct: 181 VDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCR 240
Query: 217 ERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC---DGIYETVNSLKRMMERGC 273
+ + A F EM E +V Y+S + L K DG LK M+ R
Sbjct: 241 DGCIDAAISLFKEM--ETKGIKSSVVTYNSLVRGLCKAGKWNDGAL----LLKDMVSREI 294
Query: 274 NPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAM 333
P + F + + + L+ A ++ M+ R G P+ YN ++ YC N A
Sbjct: 295 VPNVITFNVLLDVFVKEGKLQEANELYKEMITR-GISPNIITYNTLMDGYCMQNRLSEAN 353
Query: 334 KLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVY 393
+LD MV N PDI T+ L + +++ + +F + K V N V+ +
Sbjct: 354 NMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGF 413
Query: 394 MDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVK 439
S +A + ++ M+ + T +L+ GLCD L +A++
Sbjct: 414 CQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALE 459
Score = 92.0 bits (227), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 74/264 (28%), Positives = 130/264 (49%), Gaps = 14/264 (5%)
Query: 121 WDAIKSMKKENVLS-LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSA 179
D ++ M++ NV + + T++++ S + AI+ F ME G K V NSL+
Sbjct: 213 LDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRG 272
Query: 180 ICRDGKTIDAWQFLR-VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDP 238
+C+ GK D L+ +V I P+ T+ +LL+ + KE + A + + EM+ G P
Sbjct: 273 LCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITR-GISP 331
Query: 239 DNVPAYDSYLITLLKG-C--DGIYETVNSLKRMMERGCNPGM-TFFKLAFEECLTGQNLR 294
N+ Y+ TL+ G C + + E N L M+ C+P + TF L C+ +
Sbjct: 332 -NIITYN----TLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDD 386
Query: 295 GAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNIL 354
G + + + G + Y++++ +C S + A +L EMV +G PD+ TY IL
Sbjct: 387 GMKVFRN--ISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGIL 444
Query: 355 FEFLVKGRKLWEASGLFNEMVKNE 378
+ L KL +A +F ++ K++
Sbjct: 445 LDGLCDNGKLEKALEIFEDLQKSK 468
Score = 89.7 bits (221), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 88/385 (22%), Positives = 162/385 (42%), Gaps = 18/385 (4%)
Query: 112 GKNCLFDAMWDAIKSMKKENVL-------------SLATFASVFSSYVVADRVKDAITTF 158
G C + + I +KK++ + SL F+ FS+ + +
Sbjct: 52 GNVCFRERLRSGIVDIKKDDAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFC 111
Query: 159 DVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKE 217
+E G H+++ LN +++ CR KT A+ L +V+ +PD T+ L++G E
Sbjct: 112 KQLELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLE 171
Query: 218 RDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGM 277
V+ A MV E G PD V Y+S + + + D ++ L++M ER +
Sbjct: 172 GKVSEAVVLVDRMV-ENGCQPD-VVTYNSIVNGICRSGDTSL-ALDLLRKMEERNVKADV 228
Query: 278 TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLD 337
+ + + A ++ M + G + YN ++ C + + LL
Sbjct: 229 FTYSTIIDSLCRDGCIDAAISLFKEMETK-GIKSSVVTYNSLVRGLCKAGKWNDGALLLK 287
Query: 338 EMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSD 397
+MV P++ T+N+L + VK KL EA+ L+ EM+ N + Y +
Sbjct: 288 DMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQN 347
Query: 398 DPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALS 457
A M+ N CS T L+ G C + + + +K + ++++G+ S
Sbjct: 348 RLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYS 407
Query: 458 KLKQILIKARKEAVYEELLKKCKAH 482
L Q ++ K + EEL ++ +H
Sbjct: 408 ILVQGFCQSGKIKLAEELFQEMVSH 432
Score = 66.2 bits (160), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 57/244 (23%), Positives = 110/244 (45%), Gaps = 9/244 (3%)
Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
++ T+ ++ Y + +R+ +A D+M + C D+ SL+ C + D +
Sbjct: 332 NIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVF 391
Query: 194 RVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
R + R + + TY+IL++G+ + + A++ F EMV G PD + +Y I L
Sbjct: 392 RNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSH-GVLPDVM----TYGILLD 446
Query: 253 KGCDG--IYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFR 310
CD + + + + + + + G+ + E G + A ++ ++ + G +
Sbjct: 447 GLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCK-GVK 505
Query: 311 PDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGL 370
P+ Y +MIS C A LL +M +G P+ TYN L ++ L ++ L
Sbjct: 506 PNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKL 565
Query: 371 FNEM 374
EM
Sbjct: 566 IEEM 569
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/231 (21%), Positives = 96/231 (41%), Gaps = 11/231 (4%)
Query: 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FL 193
+ TF S+ Y + RV D + F + + G + + L+ C+ GK A + F
Sbjct: 368 IVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQ 427
Query: 194 RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMV---IEVGWDPDNVPAYDSYLIT 250
+V + PD TY ILL+G + A + F ++ +++G + Y + +
Sbjct: 428 EMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLG-----IVMYTTIIEG 482
Query: 251 LLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFR 310
+ KG + + N + +G P + + + +L A + M G
Sbjct: 483 MCKG-GKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKM-EEDGNA 540
Query: 311 PDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKG 361
P+ YN +I + + A+ KL++EM G D + ++ + L+ G
Sbjct: 541 PNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVIDMLLSG 591
>sp|Q9ZUE9|PP149_ARATH Pentatricopeptide repeat-containing protein At2g06000
OS=Arabidopsis thaliana GN=At2g06000 PE=2 SV=1
Length = 536
Score = 99.4 bits (246), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 105/438 (23%), Positives = 176/438 (40%), Gaps = 40/438 (9%)
Query: 72 QVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKEN 131
+V+K ++P +F+ +S ++LN +HS + +NL+ L K L D + MK +
Sbjct: 74 EVVKKLDNNPHIGFRFWEFSRFKLNIRHSFWTYNLLTRSLCKAGLHDLAGQMFECMKSDG 133
Query: 132 V--------LSLATFA--------------------------SVFSSYVVADRVKDAITT 157
V +++FA S+ ++ V DRV+DA+
Sbjct: 134 VSPNNRLLGFLVSSFAEKGKLHFATALLLQSFEVEGCCMVVNSLLNTLVKLDRVEDAMKL 193
Query: 158 FDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDG-RIKPDNDTYAILLEGWEK 216
FD ++ +D N L+ +C GK A + L V+ G +PD TY L++G+ K
Sbjct: 194 FDEHLRFQSCNDTKTFNILIRGLCGVGKAEKALELLGVMSGFGCEPDIVTYNTLIQGFCK 253
Query: 217 ERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPG 276
++ A + F ++ PD V Y S + K + E + L M+ G P
Sbjct: 254 SNELNKASEMFKDVKSGSVCSPD-VVTYTSMISGYCKA-GKMREASSLLDDMLRLGIYPT 311
Query: 277 MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLL 336
F + + + AE I G M+ G PD + +I YC + +L
Sbjct: 312 NVTFNVLVDGYAKAGEMLTAEEIRGKMIS-FGCFPDVVTFTSLIDGYCRVGQVSQGFRLW 370
Query: 337 DEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDS 396
+EM G FP+ TY+IL L +L +A L ++ + + + + +
Sbjct: 371 EEMNARGMFPNAFTYSILINALCNENRLLKARELLGQLASKDIIPQPFMYNPVIDGFCKA 430
Query: 397 DDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFAL 456
A + M + C T +L+ G C + EAV M G +
Sbjct: 431 GKVNEANVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSIFHKMVAIGCSPDKITV 490
Query: 457 SKLKQILIKA--RKEAVY 472
S L L+KA KEA +
Sbjct: 491 SSLLSCLLKAGMAKEAYH 508
Score = 34.3 bits (77), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 45/96 (46%), Gaps = 1/96 (1%)
Query: 101 PYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFD 159
P+ +N V+D K + ++ M+K+ TF + + + R+ +A++ F
Sbjct: 417 PFMYNPVIDGFCKAGKVNEANVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSIFH 476
Query: 160 VMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRV 195
M GC D ++SLLS + + G +A+ ++
Sbjct: 477 KMVAIGCSPDKITVSSLLSCLLKAGMAKEAYHLNQI 512
>sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860
OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1
Length = 819
Score = 99.0 bits (245), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 84/337 (24%), Positives = 148/337 (43%), Gaps = 6/337 (1%)
Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKEN-VLSLATFASVFSSYVVADRVKDAITTFDVM 161
WN ++ + G+N + + K MK+ V TF ++ S+Y + A+T + M
Sbjct: 456 TWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRM 515
Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERDV 220
G D+ N++L+A+ R G + + L + DGR KP+ TY LL + +++
Sbjct: 516 LDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYANGKEI 575
Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFF 280
+ E V +P V L+ + CD + E + + ERG +P +T
Sbjct: 576 G-LMHSLAEEVYSGVIEPRAVLL--KTLVLVCSKCDLLPEAERAFSELKERGFSPDITTL 632
Query: 281 KLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMV 340
Q + A + M R GF P YN ++ ++ S + G + ++L E++
Sbjct: 633 NSMVSIYGRRQMVAKANGVLDYMKER-GFTPSMATYNSLMYMHSRSADFGKSEEILREIL 691
Query: 341 YNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPY 400
G PDI +YN + + ++ +AS +F+EM + V + + Y
Sbjct: 692 AKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYNTFIGSYAADSMFE 751
Query: 401 VAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEA 437
AI +YMI++ C T N +V G C ++ EA
Sbjct: 752 EAIGVVRYMIKHGCRPNQNTYNSIVDGYCKLNRKDEA 788
Score = 75.9 bits (185), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 80/373 (21%), Positives = 147/373 (39%), Gaps = 44/373 (11%)
Query: 106 LVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASVFSSYVVADRVKDAITTFDVMEQY 164
+++ +LGK + + ++++ L + ++ S+ S++ + R ++A+ F ME+
Sbjct: 178 IIISMLGKEGRVSSAANMFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEED 237
Query: 165 GCKHDVFALN-----------------SLLSAICRDGKTIDAWQFLRVVD---------- 197
GCK + N SL+ + DG DA+ + ++
Sbjct: 238 GCKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQE 297
Query: 198 ----------GRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSY 247
D TY LL+ + K A K EMV+ G+ P ++ Y+S
Sbjct: 298 AAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLN-GFSP-SIVTYNSL 355
Query: 248 LITLLKGCDGIYETVNSLK-RMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGR 306
+ + DG+ + LK +M E+G P + + + A I+ M
Sbjct: 356 ISAYAR--DGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRN- 412
Query: 307 IGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWE 366
G +P+ +N I +Y + MK+ DE+ G PDI T+N L + E
Sbjct: 413 AGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSE 472
Query: 367 ASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVA 426
SG+F EM + V E + Y A+ ++ M++ + T N ++A
Sbjct: 473 VSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLA 532
Query: 427 GLCDMHMLPEAVK 439
L M ++ K
Sbjct: 533 ALARGGMWEQSEK 545
Score = 62.4 bits (150), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 68/257 (26%), Positives = 108/257 (42%), Gaps = 14/257 (5%)
Query: 124 IKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRD 183
+K +++L + A + S RV A F+ +++ G DV++ SL+SA
Sbjct: 162 MKQKDYQSMLDNSVVAIIISMLGKEGRVSSAANMFNGLQEDGFSLDVYSYTSLISAFANS 221
Query: 184 GKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVP 242
G+ +A F ++ + KP TY ++L + K N + E + G PD
Sbjct: 222 GRYREAVNVFKKMEEDGCKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPD--- 278
Query: 243 AYD-SYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLT--GQNLRGAEF- 298
AY + LIT K E + M G ++ K+ + L G++ R E
Sbjct: 279 AYTYNTLITCCKRGSLHQEAAQVFEEMKA----AGFSYDKVTYNALLDVYGKSHRPKEAM 334
Query: 299 -IWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEF 357
+ MV GF P YN +IS Y AM+L ++M G PD+ TY L
Sbjct: 335 KVLNEMVLN-GFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSG 393
Query: 358 LVKGRKLWEASGLFNEM 374
+ K+ A +F EM
Sbjct: 394 FERAGKVESAMSIFEEM 410
>sp|Q0WPZ6|PP158_ARATH Pentatricopeptide repeat-containing protein At2g17140
OS=Arabidopsis thaliana GN=At2g17140 PE=2 SV=1
Length = 874
Score = 97.4 bits (241), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 91/354 (25%), Positives = 161/354 (45%), Gaps = 14/354 (3%)
Query: 98 KHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAIT 156
K + + + ++V K L D + + +M+ VL + + ++ SS+ R D+
Sbjct: 179 KPNEFTFGILVRGYCKAGLTDKGLELLNAMESFGVLPNKVIYNTIVSSFCREGRNDDSEK 238
Query: 157 TFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVD-----GRIKPDNDTYAILL 211
+ M + G D+ NS +SA+C++GK +DA + ++ G +P++ TY ++L
Sbjct: 239 MVEKMREEGLVPDIVTFNSRISALCKEGKVLDASRIFSDMELDEYLGLPRPNSITYNLML 298
Query: 212 EGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMER 271
+G+ K + +AK F I D ++ +Y+ +L L++ I E LK+M ++
Sbjct: 299 KGFCKVGLLEDAKTLFES--IRENDDLASLQSYNIWLQGLVRHGKFI-EAETVLKQMTDK 355
Query: 272 GCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGA 331
G P + + + + L A+ I G M R G PD Y ++ YC + A
Sbjct: 356 GIGPSIYSYNILMDGLCKLGMLSDAKTIVGLM-KRNGVCPDAVTYGCLLHGYCSVGKVDA 414
Query: 332 AMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVR 391
A LL EM+ N P+ T NIL L K ++ EA L +M + L+ C V
Sbjct: 415 AKSLLQEMMRNNCLPNAYTCNILLHSLWKMGRISEAEELLRKMNEKGYGLDTVTCNIIVD 474
Query: 392 VYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVA----GLCDMHMLPEAVKYA 441
S + AI+ K M + + L GN + L + + LP+ + Y+
Sbjct: 475 GLCGSGELDKAIEIVKGMRVHGSAALGNLGNSYIGLVDDSLIENNCLPDLITYS 528
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 64/213 (30%), Positives = 96/213 (45%), Gaps = 12/213 (5%)
Query: 173 LNSLLSAICRDGKT--ID-AWQFLRVVDGRI---KPDNDTYAILLEGWEKERDVANAKKT 226
L+SLLS + K+ ID A+ ++V R KP Y +LLE KER V
Sbjct: 75 LSSLLSVVSIFAKSNHIDKAFPQFQLVRSRFPENKPSVYLYNLLLESCIKERRVEFVSWL 134
Query: 227 FGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPG-MTFFKLAFE 285
+ +MV+ G P + LI L + M E+GC P TF L
Sbjct: 135 YKDMVL-CGIAPQTYTF--NLLIRALCDSSCVDAARELFDEMPEKGCKPNEFTFGILVRG 191
Query: 286 ECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAF 345
C G +G E + AM G P+ +YN ++S +C + K++++M G
Sbjct: 192 YCKAGLTDKGLELL-NAMES-FGVLPNKVIYNTIVSSFCREGRNDDSEKMVEKMREEGLV 249
Query: 346 PDIQTYNILFEFLVKGRKLWEASGLFNEMVKNE 378
PDI T+N L K K+ +AS +F++M +E
Sbjct: 250 PDIVTFNSRISALCKEGKVLDASRIFSDMELDE 282
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 82/425 (19%), Positives = 168/425 (39%), Gaps = 57/425 (13%)
Query: 94 QLNDKH---SPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLA-TFASVFSSYVVAD 149
Q+ DK S Y++N+++D L K + + MK+ V A T+ + Y
Sbjct: 351 QMTDKGIGPSIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGVCPDAVTYGCLLHGYCSVG 410
Query: 150 RVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYA 208
+V A + M + C + + N LL ++ + G+ +A + LR ++ + D T
Sbjct: 411 KVDAAKSLLQEMMRNNCLPNAYTCNILLHSLWKMGRISEAEELLRKMNEKGYGLDTVTCN 470
Query: 209 ILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRM 268
I+++G ++ A + M + N+ +SY+ G+ + +
Sbjct: 471 IIVDGLCGSGELDKAIEIVKGMRVHGSAALGNLG--NSYI--------GLVD-----DSL 515
Query: 269 MERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNE 328
+E C P + + A+ ++ M+G +PD+ YN+ I +C +
Sbjct: 516 IENNCLPDLITYSTLLNGLCKAGRFAEAKNLFAEMMGE-KLQPDSVAYNIFIHHFCKQGK 574
Query: 329 TGAAMK-----------------------------------LLDEMVYNGAFPDIQTYNI 353
+A + L+DEM G P+I TYN
Sbjct: 575 ISSAFRVLKDMEKKGCHKSLETYNSLILGLGIKNQIFEIHGLMDEMKEKGISPNICTYNT 634
Query: 354 LFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENH 413
++L +G K+ +A+ L +EM++ N + + + + D +A + ++ + +
Sbjct: 635 AIQYLCEGEKVEDATNLLDEMMQKNIAPNVFSFKYLIEAFCKVPDFDMAQEVFETAV-SI 693
Query: 414 CSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYE 473
C +L+ L L +A + + + ++G ++ F L + L K + V
Sbjct: 694 CGQKEGLYSLMFNELLAAGQLLKATELLEAVLDRGFELGTFLYKDLVESLCKKDELEVAS 753
Query: 474 ELLKK 478
+L K
Sbjct: 754 GILHK 758
>sp|Q9FLJ6|PP439_ARATH Pentatricopeptide repeat-containing protein At5g61370,
mitochondrial OS=Arabidopsis thaliana GN=At5g61370 PE=2
SV=1
Length = 487
Score = 96.3 bits (238), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 94/386 (24%), Positives = 163/386 (42%), Gaps = 65/386 (16%)
Query: 42 LCEIIANTPSPT-----VEDVLDKTLIRVSQETVEQVLKFSYSHPGPA--VKFFRWSAYQ 94
L E+I SP +E+ L++ + S V QV++ + P ++FF WS
Sbjct: 37 LHEVIRIVSSPVGGLDDLEENLNQVSVSPSSNLVTQVIESCKNETSPRRLLRFFSWSCKS 96
Query: 95 LNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKEN-VLSLATFASVFSSYVVADRVKD 153
L +N V+ +L + AM + ++KEN + TF+ V + V + +D
Sbjct: 97 LGSSLHDKEFNYVLRVLAEKKDHTAMQILLSDLRKENRAMDKQTFSIVAETLVKVGKEED 156
Query: 154 AITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR----VVDGRIKPDNDTYAI 209
AI F +++++ C D F + +++SA+C G A + V+ G + Y
Sbjct: 157 AIGIFKILDKFSCPQDGFTVTAIISALCSRGHVKRALGVMHHHKDVISGN---ELSVYRS 213
Query: 210 LLEGWEKERDVANAKKTFGEMVIEVGWDPD--------------NV-------------- 241
LL GW +R+V A++ +M G PD NV
Sbjct: 214 LLFGWSVQRNVKEARRVIQDMK-SAGITPDLFCFNSLLTCLCERNVNRNPSGLVPEALNI 272
Query: 242 ----------PAYDSY--LITLLKGCDGIYETVNSLKRMMERGCNPGM-TFFKLAFEECL 288
P SY L++ L + E+ L++M GC+P +++ + L
Sbjct: 273 MLEMRSYKIQPTSMSYNILLSCLGRTRRVRESCQILEQMKRSGCDPDTGSYYFVVRVLYL 332
Query: 289 TGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDI 348
TG+ +G + + M+ R GFRP+ Y +I + C A++L ++M +
Sbjct: 333 TGRFGKGNQIV-DEMIER-GFRPERKFYYDLIGVLCGVERVNFALQLFEKMKRSSVGGYG 390
Query: 349 QTYNILFEFLV------KGRKLWEAS 368
Q Y++L L KGR+LWE +
Sbjct: 391 QVYDLLIPKLCKGGNFEKGRELWEEA 416
>sp|Q9LFQ4|PP383_ARATH Pentatricopeptide repeat-containing protein At5g15010,
mitochondrial OS=Arabidopsis thaliana GN=At5g15010 PE=2
SV=2
Length = 572
Score = 95.9 bits (237), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 93/402 (23%), Positives = 166/402 (41%), Gaps = 21/402 (5%)
Query: 58 LDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLF 117
L++ ++ S E V ++L + A FF W+ Q S ++ ++ +LGK F
Sbjct: 118 LEECDVKPSNELVVEILSRVRNDWETAFTFFVWAGKQQGYVRSVREYHSMISILGKMRKF 177
Query: 118 DAMWDAIKSMKK--ENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNS 175
D W I M+K ++++ T + Y V AI TF +++ + + S
Sbjct: 178 DTAWTLIDEMRKFSPSLVNSQTLLIMIRKYCAVHDVGKAINTFHAYKRFKLEMGIDDFQS 237
Query: 176 LLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVG 235
LLSA+CR DA + + D ++ I+L GW +V + + + +E+G
Sbjct: 238 LLSALCRYKNVSDAGHLIFCNKDKYPFDAKSFNIVLNGW---CNVIGSPREAERVWMEMG 294
Query: 236 --WDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNL 293
+V +Y S + KG + + + RM + P + +
Sbjct: 295 NVGVKHDVVSYSSMISCYSKG-GSLNKVLKLFDRMKKECIEPDRKVYNAVVHALAKASFV 353
Query: 294 RGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNI 353
A + M G P+ YN +I C + +T A ++ DEM+ G FP I+TY+
Sbjct: 354 SEARNLMKTMEEEKGIEPNVVTYNSLIKPLCKARKTEEAKQVFDEMLEKGLFPTIRTYHA 413
Query: 354 LFEFLVKGRKLWEASGLFNEM-----VKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKY 408
L G +++E +M V+ +L + CR + D D+ + W
Sbjct: 414 FMRILRTGEEVFELLAKMRKMGCEPTVETYIMLIRKLCR-----WRDFDN---VLLLWDE 465
Query: 409 MIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQ 450
M E + +++ GL + EA Y K M +KG++
Sbjct: 466 MKEKTVGPDLSSYIVMIHGLFLNGKIEEAYGYYKEMKDKGMR 507
>sp|O04504|PPR27_ARATH Pentatricopeptide repeat-containing protein At1g09820
OS=Arabidopsis thaliana GN=At1g09820 PE=2 SV=1
Length = 606
Score = 95.5 bits (236), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 74/279 (26%), Positives = 136/279 (48%), Gaps = 18/279 (6%)
Query: 106 LVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYG 165
L++ LL +N D + + ++++ ++ TF V ++ ++ A + M+ YG
Sbjct: 194 LMIALLKENRSADVEYVYKEMIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYG 253
Query: 166 CKHDVFALNSLLSAICR---DGKTIDAWQFLR-VVDGRIKPDNDTYAILLEGWEKERDVA 221
C +V + N+L+ C+ +GK A L+ +V+ + P+ T+ IL++G+ K+ ++
Sbjct: 254 CSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEMVENDVSPNLTTFNILIDGFWKDDNLP 313
Query: 222 NAKKTFGEMVIEVGWDPD---NVPAYDSYLITLLKGCDG--IYETVNSLKRMMERGCNPG 276
+ K F EM+ D D NV +Y+S + L C+G I E ++ +M+ G P
Sbjct: 314 GSMKVFKEML-----DQDVKPNVISYNSLINGL---CNGGKISEAISMRDKMVSAGVQPN 365
Query: 277 MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLL 336
+ + L+ A ++G++ G+ G P T MYNM+I YC + L
Sbjct: 366 LITYNALINGFCKNDMLKEALDMFGSVKGQ-GAVPTTRMYNMLIDAYCKLGKIDDGFALK 424
Query: 337 DEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
+EM G PD+ TYN L L + + A LF+++
Sbjct: 425 EEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLT 463
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 72/311 (23%), Positives = 133/311 (42%), Gaps = 10/311 (3%)
Query: 144 SYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDA-WQFLRVVDGRIKP 202
+Y R + F YG K + L+ A+ ++ ++ D + + ++ +I+P
Sbjct: 162 AYANNSRFELGFEAFKRSGYYGYKLSALSCKPLMIALLKENRSADVEYVYKEMIRRKIQP 221
Query: 203 DNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYL--ITLLKGCDGIYE 260
+ T+ +++ K + A+ +M + G P NV +Y++ + L G +Y+
Sbjct: 222 NVFTFNVVINALCKTGKMNKARDVMEDMKV-YGCSP-NVVSYNTLIDGYCKLGGNGKMYK 279
Query: 261 TVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMI 320
LK M+E +P +T F + + NL G+ ++ M+ + +P+ YN +I
Sbjct: 280 ADAVLKEMVENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQ-DVKPNVISYNSLI 338
Query: 321 SLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENV 380
+ C + A+ + D+MV G P++ TYN L K L EA +F + V
Sbjct: 339 NGLCNGGKISEAISMRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQGAV 398
Query: 381 LNHENCRAAVRVY--MDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAV 438
+ Y + D A+K + E D+ T N L+AGLC + A
Sbjct: 399 PTTRMYNMLIDAYCKLGKIDDGFALK-EEMEREGIVPDVG-TYNCLIAGLCRNGNIEAAK 456
Query: 439 KYAKGMAEKGI 449
K + KG+
Sbjct: 457 KLFDQLTSKGL 467
Score = 62.8 bits (151), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 71/283 (25%), Positives = 122/283 (43%), Gaps = 18/283 (6%)
Query: 103 AWNLVVD----LLGKNCLFDAMWDAIKSMKKENVLS--LATFASVFSSYVVADRVKDAIT 156
++N ++D L G ++ A DA+ EN +S L TF + + D + ++
Sbjct: 260 SYNTLIDGYCKLGGNGKMYKA--DAVLKEMVENDVSPNLTTFNILIDGFWKDDNLPGSMK 317
Query: 157 TFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWE 215
F M K +V + NSL++ +C GK +A ++V ++P+ TY L+ G+
Sbjct: 318 VFKEMLDQDVKPNVISYNSLINGLCNGGKISEAISMRDKMVSAGVQPNLITYNALINGFC 377
Query: 216 KERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD-GIYETVNSLKRMMER-GC 273
K + A FG + VP Y + + C G + +LK MER G
Sbjct: 378 KNDMLKEALDMFGSV-----KGQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGI 432
Query: 274 NPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAM 333
P + + N+ A+ ++ + + G PD +++++ YC E+ A
Sbjct: 433 VPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTSK-GL-PDLVTFHILMEGYCRKGESRKAA 490
Query: 334 KLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK 376
LL EM G P TYNI+ + K L A+ + +M K
Sbjct: 491 MLLKEMSKMGLKPRHLTYNIVMKGYCKEGNLKAATNMRTQMEK 533
Score = 59.3 bits (142), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 62/285 (21%), Positives = 126/285 (44%), Gaps = 10/285 (3%)
Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVM 161
+N+++D K+ K M ++V ++ ++ S+ + ++ +AI+ D M
Sbjct: 298 TFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVISYNSLINGLCNGGKISEAISMRDKM 357
Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDV 220
G + ++ N+L++ C++ +A V G+ P Y +L++ + K +
Sbjct: 358 VSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKI 417
Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSL-KRMMERGCNPGMTF 279
+ EM E G PD V Y+ + L + +G E L ++ +G +TF
Sbjct: 418 DDGFALKEEMERE-GIVPD-VGTYNCLIAGLCR--NGNIEAAKKLFDQLTSKGLPDLVTF 473
Query: 280 FKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEM 339
L C G++ + A + + ++G +P YN+++ YC AA + +M
Sbjct: 474 HILMEGYCRKGESRKAAMLL--KEMSKMGLKPRHLTYNIVMKGYCKEGNLKAATNMRTQM 531
Query: 340 VYNGAFP-DIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNH 383
++ +YN+L + + KL +A+ L NEM++ V N
Sbjct: 532 EKERRLRMNVASYNVLLQGYSQKGKLEDANMLLNEMLEKGLVPNR 576
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/249 (24%), Positives = 108/249 (43%), Gaps = 12/249 (4%)
Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
+L T+ ++ + + D +K+A+ F ++ G N L+ A C+ GK D +
Sbjct: 365 NLITYNALINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKIDDGFALK 424
Query: 194 RVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
++ I PD TY L+ G + ++ AKK F ++ +P ++ I L+
Sbjct: 425 EEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLT------SKGLPDLVTFHI-LM 477
Query: 253 KGCDGIYETVNS---LKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGF 309
+G E+ + LK M + G P + + + NL+ A + M
Sbjct: 478 EGYCRKGESRKAAMLLKEMSKMGLKPRHLTYNIVMKGYCKEGNLKAATNMRTQMEKERRL 537
Query: 310 RPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASG 369
R + YN+++ Y + A LL+EM+ G P+ TY I+ E +V + + G
Sbjct: 538 RMNVASYNVLLQGYSQKGKLEDANMLLNEMLEKGLVPNRITYEIVKEEMVDQGFVPDIEG 597
Query: 370 -LFNEMVKN 377
LFN K+
Sbjct: 598 HLFNVSTKS 606
Score = 56.6 bits (135), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 76/158 (48%), Gaps = 4/158 (2%)
Query: 296 AEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILF 355
E+++ M+ R +P+ +N++I+ C + + A ++++M G P++ +YN L
Sbjct: 207 VEYVYKEMIRR-KIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLI 265
Query: 356 EFLVK---GRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIEN 412
+ K K+++A + EMV+N+ N + + D+ ++K +K M++
Sbjct: 266 DGYCKLGGNGKMYKADAVLKEMVENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQ 325
Query: 413 HCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQ 450
+ N L+ GLC+ + EA+ M G+Q
Sbjct: 326 DVKPNVISYNSLINGLCNGGKISEAISMRDKMVSAGVQ 363
>sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930,
chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2
SV=2
Length = 629
Score = 95.5 bits (236), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 76/304 (25%), Positives = 139/304 (45%), Gaps = 5/304 (1%)
Query: 136 ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRV 195
TF ++ + ++ +A+ D M GC+ D+F ++++ +C+ G A L+
Sbjct: 186 VTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKK 245
Query: 196 VD-GRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG 254
++ G+I+ D Y +++ ++V +A F EM + G P NV Y+S LI L
Sbjct: 246 MEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNK-GIRP-NVVTYNS-LIRCLCN 302
Query: 255 CDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTH 314
+ L M+ER NP + F + + L AE ++ M+ R PD
Sbjct: 303 YGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKR-SIDPDIF 361
Query: 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
Y+ +I+ +C + A + + M+ FP++ TYN L + K +++ E LF EM
Sbjct: 362 TYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREM 421
Query: 375 VKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHML 434
+ V N ++ + D +A K +K M+ + T ++L+ GLC L
Sbjct: 422 SQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKL 481
Query: 435 PEAV 438
+A+
Sbjct: 482 EKAL 485
Score = 84.7 bits (208), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 75/298 (25%), Positives = 139/298 (46%), Gaps = 14/298 (4%)
Query: 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLS-LATFASVFSSYVVADRVKDAITTFDV 160
+ + VV+ L K D +K M+K + + + + ++ + V DA+ F
Sbjct: 221 FTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTE 280
Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYAILLEGWEKERD 219
M+ G + +V NSL+ +C G+ DA + L +++ +I P+ T++ L++ + KE
Sbjct: 281 MDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGK 340
Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTF 279
+ A+K + EM I+ DPD + Y S LI D + E + + M+ + C P +
Sbjct: 341 LVEAEKLYDEM-IKRSIDPD-IFTYSS-LINGFCMHDRLDEAKHMFELMISKDCFPNVVT 397
Query: 280 FKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEM 339
+ + + + ++ M R G +T YN +I + + A K+ +M
Sbjct: 398 YNTLIKGFCKAKRVEEGMELFREMSQR-GLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKM 456
Query: 340 VYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNE--------NVLNHENCRAA 389
V +G PDI TY+IL + L K KL +A +F + K++ N++ C+A
Sbjct: 457 VSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAG 514
Score = 66.2 bits (160), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 93/433 (21%), Positives = 168/433 (38%), Gaps = 57/433 (13%)
Query: 87 FFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSY 145
+F ++Y +K S N+++DL D D M + L S+ F + S+
Sbjct: 39 YFSAASYDYREKLS---RNVLLDLK-----LDDAVDLFGEMVQSRPLPSIVEFNKLLSAI 90
Query: 146 VVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDN 204
++ I+ + M+ +D+++ N L++ CR + A L +++ +PD
Sbjct: 91 AKMNKFDLVISLGERMQNLRISYDLYSYNILINCFCRRSQLPLALAVLGKMMKLGYEPDI 150
Query: 205 DTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC---DGIYET 261
T + LL G+ + ++ A +M + + + P+ V TL+ G + E
Sbjct: 151 VTLSSLLNGYCHGKRISEAVALVDQMFV-MEYQPNTVT-----FNTLIHGLFLHNKASEA 204
Query: 262 VNSLKRMMERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMI 320
V + RM+ RGC P + T+ + C G + G+I D +Y +I
Sbjct: 205 VALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKI--EADVVIYTTII 262
Query: 321 SLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFL---------------------- 358
C A+ L EM G P++ TYN L L
Sbjct: 263 DALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKIN 322
Query: 359 -------------VKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKF 405
VK KL EA L++EM+K + + + + D A
Sbjct: 323 PNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHM 382
Query: 406 WKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIK 465
++ MI C T N L+ G C + E ++ + M+++G+ + L Q L +
Sbjct: 383 FELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQ 442
Query: 466 ARKEAVYEELLKK 478
A + +++ KK
Sbjct: 443 AGDCDMAQKIFKK 455
Score = 59.3 bits (142), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 62/282 (21%), Positives = 118/282 (41%), Gaps = 15/282 (5%)
Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-F 192
++ TF+++ ++V ++ +A +D M + D+F +SL++ C + +A F
Sbjct: 324 NVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMF 383
Query: 193 LRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIE--VGWDPDNVPAYDSYLIT 250
++ P+ TY L++G+ K + V + F EM VG N Y++ +
Sbjct: 384 ELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVG----NTVTYNTLIQG 439
Query: 251 LLKG--CDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIG 308
L + CD + K+M+ G P + + + + L A ++ + +
Sbjct: 440 LFQAGDCDMAQKI---FKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVF-EYLQKSK 495
Query: 309 FRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFE-FLVKGRKLWEA 367
PD + YN+MI C + + L + G P++ Y + F KG K EA
Sbjct: 496 MEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLK-EEA 554
Query: 368 SGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYM 409
LF EM ++ + N +R + D + + K M
Sbjct: 555 DALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASAELIKEM 596
>sp|P0C8R0|PP416_ARATH Putative pentatricopeptide repeat-containing protein At5g43820
OS=Arabidopsis thaliana GN=At5g43820 PE=3 SV=1
Length = 546
Score = 95.1 bits (235), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 111/467 (23%), Positives = 180/467 (38%), Gaps = 76/467 (16%)
Query: 53 TVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLG 112
++ L I +S + V VL V FF W+ + ++++++ LG
Sbjct: 103 AIQKSLSSLGIGLSIDIVADVLNRGNLSGEAMVTFFDWAVREPGVTKDVGSYSVILRALG 162
Query: 113 KNCLFDAMWDAIKSMKKENV-LSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVF 171
+ LF M D +K M E V L S+V V+ AI F+ E +G K
Sbjct: 163 RRKLFSFMMDVLKGMVCEGVNPDLECLTIAMDSFVRVHYVRRAIELFEESESFGVKCSTE 222
Query: 172 ALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMV 231
+ N+LL +C A G I D+ +Y I++ GW K +V +K EMV
Sbjct: 223 SFNALLRCLCERSHVSAAKSVFNAKKGNIPFDSCSYNIMISGWSKLGEVEEMEKVLKEMV 282
Query: 232 IEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQ 291
E G+ PD + S+LI L I ++V + +G
Sbjct: 283 -ESGFGPDCLSY--SHLIEGLGRTGRINDSVEIFDNIKHKG------------------- 320
Query: 292 NLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTY 351
N+ PD ++YN MI + + + +M+ M+ P+++TY
Sbjct: 321 NV-----------------PDANVYNAMICNFISARDFDESMRYYRRMLDEECEPNLETY 363
Query: 352 NILFEFLVKGRKLWEASGLFNEMVKN-------------ENVLNHENCRAAVRVYMDSDD 398
+ L L+KGRK+ +A +F EM+ + + ++ AA+ +Y S
Sbjct: 364 SKLVSGLIKGRKVSDALEIFEEMLSRGVLPTTGLVTSFLKPLCSYGPPHAAMVIYQKSRK 423
Query: 399 PYVAIKFWKY--------------MIENHCSDLSETG--------NLLVAGLCDMHMLPE 436
I Y M+ N ++ E+G +V GLC + L
Sbjct: 424 AGCRISESAYKLLLKRLSRFGKCGMLLNVWDEMQESGYPSDVEVYEYIVDGLCIIGHLEN 483
Query: 437 AVKYAKGMAEKGIQVTPFALSKLKQILIKARK-EAVYEELLKKCKAH 482
AV + KG F S+L L+ + K E Y+ LK KA
Sbjct: 484 AVLVMEEAMRKGFCPNRFVYSRLSSKLMASNKTELAYKLFLKIKKAR 530
>sp|Q9M8M3|PP136_ARATH Pentatricopeptide repeat-containing protein At1g80550,
mitochondrial OS=Arabidopsis thaliana GN=At1g80550 PE=2
SV=1
Length = 448
Score = 95.1 bits (235), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 104/403 (25%), Positives = 169/403 (41%), Gaps = 42/403 (10%)
Query: 67 QETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKS 126
Q+TV + L + A++FF W + +H+ +N V+D+LGK F+ W I
Sbjct: 47 QKTVCEALTCYSNDWQKALEFFNWVERESGFRHTTETFNRVIDILGKYFEFEISWALINR 106
Query: 127 M--KKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDG 184
M E+V + TF VF YV A V++AI +D ++ + + D + +L+ A+C
Sbjct: 107 MIGNTESVPNHVTFRIVFKRYVTAHLVQEAIDAYDKLDDFNLR-DETSFYNLVDALCEHK 165
Query: 185 KTIDAWQFL----RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDN 240
++A + + +G + + ++L GW K K+ + +M E G D
Sbjct: 166 HVVEAEELCFGKNVIGNGFSVSNTKIHNLILRGWSKLGWWGKCKEYWKKMDTE-GVTKD- 223
Query: 241 VPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIW 300
+ +Y Y+ + K ++ V K M R + + Q + ++
Sbjct: 224 LFSYSIYMDIMCKSGKP-WKAVKLYKEMKSRRMKLDVVAYNTVIRAIGASQGVEFGIRVF 282
Query: 301 GAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVK 360
M R G P+ +N +I L C A ++LDEM G PD TY LF L K
Sbjct: 283 REMRER-GCEPNVATHNTIIKLLCEDGRMRDAYRMLDEMPKRGCQPDSITYMCLFSRLEK 341
Query: 361 GRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAI--KF------------W 406
E LF M+ R+ VR MD+ YV + KF W
Sbjct: 342 PS---EILSLFGRMI-----------RSGVRPKMDT---YVMLMRKFERWGFLQPVLYVW 384
Query: 407 KYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
K M E+ + S N ++ L ML A +Y + M E+G+
Sbjct: 385 KTMKESGDTPDSAAYNAVIDALIQKGMLDMAREYEEEMIERGL 427
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 54/250 (21%), Positives = 100/250 (40%), Gaps = 50/250 (20%)
Query: 102 YAWNLVVDLLGKNCLFDAMWDAIK---SMKKENV-LSLATFASVFSSYVVADRVKDAITT 157
+++++ +D++ C W A+K MK + L + + +V + + V+ I
Sbjct: 225 FSYSIYMDIM---CKSGKPWKAVKLYKEMKSRRMKLDVVAYNTVIRAIGASQGVEFGIRV 281
Query: 158 FDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEK 216
F M + GC+ +V N+++ +C DG+ DA++ L + R +PD+ TY L EK
Sbjct: 282 FREMRERGCEPNVATHNTIIKLLCEDGRMRDAYRMLDEMPKRGCQPDSITYMCLFSRLEK 341
Query: 217 ERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPG 276
++ + FG M+ P D+Y++ + K
Sbjct: 342 PSEILS---LFGRMI-----RSGVRPKMDTYVMLMRK----------------------- 370
Query: 277 MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLL 336
F + F L+ ++W M G PD+ YN +I A +
Sbjct: 371 --FERWGF--------LQPVLYVWKTM-KESGDTPDSAAYNAVIDALIQKGMLDMAREYE 419
Query: 337 DEMVYNGAFP 346
+EM+ G P
Sbjct: 420 EEMIERGLSP 429
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/255 (18%), Positives = 101/255 (39%), Gaps = 19/255 (7%)
Query: 215 EKERDVANAKKTFGEMV--------IEVGW--------DPDNVPAYDSYLITLLKGCDG- 257
E+E + +TF ++ E+ W + ++VP + ++ I +
Sbjct: 72 ERESGFRHTTETFNRVIDILGKYFEFEISWALINRMIGNTESVPNHVTFRIVFKRYVTAH 131
Query: 258 -IYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFR-PDTHM 315
+ E +++ ++ + +F+ L C + E +G V GF +T +
Sbjct: 132 LVQEAIDAYDKLDDFNLRDETSFYNLVDALCEHKHVVEAEELCFGKNVIGNGFSVSNTKI 191
Query: 316 YNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
+N+++ + G + +M G D+ +Y+I + + K K W+A L+ EM
Sbjct: 192 HNLILRGWSKLGWWGKCKEYWKKMDTEGVTKDLFSYSIYMDIMCKSGKPWKAVKLYKEMK 251
Query: 376 KNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLP 435
L+ +R S I+ ++ M E C T N ++ LC+ +
Sbjct: 252 SRRMKLDVVAYNTVIRAIGASQGVEFGIRVFREMRERGCEPNVATHNTIIKLLCEDGRMR 311
Query: 436 EAVKYAKGMAEKGIQ 450
+A + M ++G Q
Sbjct: 312 DAYRMLDEMPKRGCQ 326
>sp|Q0WKZ3|PP105_ARATH Pentatricopeptide repeat-containing protein At1g64580
OS=Arabidopsis thaliana GN=At1g64580 PE=2 SV=1
Length = 523
Score = 95.1 bits (235), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 107/483 (22%), Positives = 195/483 (40%), Gaps = 49/483 (10%)
Query: 14 SPDPHNKRKRSTFASHLDVPNLPPTIKTLCEIIANTPSPTVEDVLDKTLIRVSQETVEQV 73
S H+ R + L CE++ + P P++ D + L +++ +
Sbjct: 39 SGASHHHHYRERLRNELHCIKFDDAFSLFCEMLQSRPIPSIVD-FTRVLTVIAKMNKFDI 97
Query: 74 LKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL 133
+ + Y L H Y++ +++ + + M K
Sbjct: 98 VIYLYH-----------KMENLGISHDLYSFTILIHCFCRCSRLSLALALLGKMMKLGFR 146
Query: 134 -SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQF 192
S+ T S+ + + +R ++A++ D M+ +G +V N++++ +C++ +A +
Sbjct: 147 PSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRDLNNALEV 206
Query: 193 LRVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITL 251
++ + I+ D TY L+ G +A + +MV + DP NV + + + T
Sbjct: 207 FYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMV-KRKIDP-NVIFFTALIDTF 264
Query: 252 LKGCDGIYETVNSLKRMMERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFR 310
+K + E N K M+ R P + T+ L C+ G L A++++ MV + G
Sbjct: 265 VKE-GNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGC-LGDAKYMFDLMVSK-GCF 321
Query: 311 PDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGL 370
PD YN +I+ +C S MKL EM Y G D TYN L + KL A +
Sbjct: 322 PDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKV 381
Query: 371 FNEMVK--------NENVL-----NHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDL 417
FN MV N+L N+ A+ + D + + Y
Sbjct: 382 FNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDIITY--------- 432
Query: 418 SETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLK 477
N+++ GLC L EA + + KG++ P A++ + I RK + E K
Sbjct: 433 ----NIIIQGLCRTDKLKEAWCLFRSLTRKGVK--PDAIAYITMISGLCRK-GLQREADK 485
Query: 478 KCK 480
C+
Sbjct: 486 LCR 488
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 102/229 (44%), Gaps = 9/229 (3%)
Query: 127 MKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKT 186
+++ V ++ T+ S+ + + + + DA FD+M GC DV N+L++ C+ +
Sbjct: 281 IRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKGCFPDVVTYNTLITGFCKSKRV 340
Query: 187 IDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYD 245
D + F + + D TY L+ G+ + + A+K F MV + G PD V
Sbjct: 341 EDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMV-DCGVSPDIV---- 395
Query: 246 SYLITLLKGCDG--IYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAM 303
+Y I L C+ I + + ++ + + + + + + + L+ A ++ ++
Sbjct: 396 TYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDIITYNIIIQGLCRTDKLKEAWCLFRSL 455
Query: 304 VGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYN 352
R G +PD Y MIS C A KL M +G P + Y+
Sbjct: 456 T-RKGVKPDAIAYITMISGLCRKGLQREADKLCRRMKEDGFMPSERIYD 503
>sp|Q9CAN0|PPR99_ARATH Pentatricopeptide repeat-containing protein At1g63130,
mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2
SV=1
Length = 630
Score = 94.4 bits (233), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 98/422 (23%), Positives = 178/422 (42%), Gaps = 36/422 (8%)
Query: 77 SYSH--------PGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCL-----FDAMWDA 123
S+SH G + + S +LND A NL D++ F + A
Sbjct: 31 SFSHCSFWVRDFSGVRYDYRKISINRLNDLKLDDAVNLFGDMVKSRPFPSIVEFSKLLSA 90
Query: 124 IKSMKKENVL--------------SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHD 169
I M K +++ +L T++ + + + ++ A+ M + G + D
Sbjct: 91 IAKMNKFDLVISLGEQMQNLGISHNLYTYSILINCFCRRSQLSLALAVLAKMMKLGYEPD 150
Query: 170 VFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFG 228
+ LNSLL+ C + DA + ++V+ +PD+ T+ L+ G + + A
Sbjct: 151 IVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVD 210
Query: 229 EMVIEVGWDPDNVPAYDSYLITLLKGCD-GIYETVNSLKRMMERG-CNPGMTFFKLAFEE 286
MV++ G PD V +Y I + C G + SL + ME+G PG+ + +
Sbjct: 211 RMVVK-GCQPDLV----TYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDA 265
Query: 287 CLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFP 346
+N+ A ++ M + G RP+ YN +I C A +LL +M+ P
Sbjct: 266 LCNYKNVNDALNLFTEMDNK-GIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINP 324
Query: 347 DIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFW 406
++ T++ L + VK KL EA L++EM+K + + + + D A +
Sbjct: 325 NVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMF 384
Query: 407 KYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKA 466
+ MI C T N L+ G C + E ++ + M+++G+ + L +A
Sbjct: 385 ELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQA 444
Query: 467 RK 468
R+
Sbjct: 445 RE 446
Score = 74.7 bits (182), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/305 (23%), Positives = 129/305 (42%), Gaps = 39/305 (12%)
Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVM 161
+ +VV+ L K D +K M++ + + + ++ + V DA+ F M
Sbjct: 223 TYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEM 282
Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYAILLEGWEKERDV 220
+ G + +V NSL+ +C G+ DA + L +++ +I P+ T++ L++ + KE +
Sbjct: 283 DNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKL 342
Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNP----- 275
A+K + EM I+ DPD + Y S LI D + E + + M+ + C P
Sbjct: 343 VEAEKLYDEM-IKRSIDPD-IFTYSS-LINGFCMHDRLDEAKHMFELMISKDCFPNVVTY 399
Query: 276 ---------------GMTFFKLAFEECLTGQNLRGAEFIWGAMVGRI------------- 307
GM F+ + L G + I G R
Sbjct: 400 NTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVS 459
Query: 308 -GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWE 366
G PD Y++++ C + + A+ + + + + PDI TYNI+ E + K K+ +
Sbjct: 460 DGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVED 519
Query: 367 ASGLF 371
LF
Sbjct: 520 GWDLF 524
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/275 (21%), Positives = 107/275 (38%), Gaps = 42/275 (15%)
Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
T++S+ + + + DR+ +A F++M C +V N+L+ C+ + + + R +
Sbjct: 363 TYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREM 422
Query: 197 DGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
R + + TY L+ G+ + R+ NA+ F +MV
Sbjct: 423 SQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMV-----------------------S 459
Query: 256 DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHM 315
DG+ + + +++ CN G L E L R PD +
Sbjct: 460 DGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQ----------------RSKMEPDIYT 503
Query: 316 YNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFE-FLVKGRKLWEASGLFNEM 374
YN+MI C + + L + G P++ TY + F KG K EA LF EM
Sbjct: 504 YNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLK-EEADALFREM 562
Query: 375 VKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYM 409
+ + + +R ++ D + + + M
Sbjct: 563 KEEGPLPDSGTYNTLIRAHLRDGDKAASAELIREM 597
>sp|Q9M1D8|PP288_ARATH Pentatricopeptide repeat-containing protein At3g60050
OS=Arabidopsis thaliana GN=At3g60050 PE=2 SV=1
Length = 473
Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 95/336 (28%), Positives = 150/336 (44%), Gaps = 25/336 (7%)
Query: 55 EDVLDKTLIRVSQETVEQVL-----KFSYSHPGP----AVKFFRWSAYQLNDKHSPYAWN 105
+ VLD+ +RVS V +VL SY + A +FF WS Q +H+ +++
Sbjct: 94 KSVLDELNVRVSGLLVREVLVGILRNLSYDNKARCAKLAYRFFLWSGEQECFRHTVNSYH 153
Query: 106 LVVDLLGKNCLFDAMWDAIKSMKKENVLSLA-TFASVFSSYVVADRVKDAITTFDVMEQY 164
L++ + + + AMW + M ++ + A TF + S A K A+ F + +
Sbjct: 154 LLMKIFAECGEYKAMWRLVDEMVQDGFPTTARTFNLLICSCGEAGLAKQAVVQFMKSKTF 213
Query: 165 G---CKHDVFA-LNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKER-- 218
KH A LNSLL + K I+ W + ++++ PD TY ILL W R
Sbjct: 214 NYRPFKHSYNAILNSLLGV--KQYKLIE-WVYKQMLEDGFSPDVLTYNILL--WTNYRLG 268
Query: 219 DVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMT 278
+ + F EM + G+ PD+ Y+ L L KG + + +L M E G +P +
Sbjct: 269 KMDRFDRLFDEMARD-GFSPDSY-TYNILLHILGKGNKPL-AALTTLNHMKEVGIDPSVL 325
Query: 279 FFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDE 338
+ + NL ++ MV + G RPD Y +MI+ Y S E A ++ E
Sbjct: 326 HYTTLIDGLSRAGNLEACKYFLDEMV-KAGCRPDVVCYTVMITGYVVSGELDKAKEMFRE 384
Query: 339 MVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
M G P++ TYN + L + EA L EM
Sbjct: 385 MTVKGQLPNVFTYNSMIRGLCMAGEFREACWLLKEM 420
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 59/128 (46%), Gaps = 4/128 (3%)
Query: 154 AITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLE 212
A+TT + M++ G V +L+ + R G FL +V +PD Y +++
Sbjct: 308 ALTTLNHMKEVGIDPSVLHYTTLIDGLSRAGNLEACKYFLDEMVKAGCRPDVVCYTVMIT 367
Query: 213 GWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERG 272
G+ ++ AK+ F EM ++ G P NV Y+S + L + E LK M RG
Sbjct: 368 GYVVSGELDKAKEMFREMTVK-GQLP-NVFTYNSMIRGLCMAGE-FREACWLLKEMESRG 424
Query: 273 CNPGMTFF 280
CNP +
Sbjct: 425 CNPNFVVY 432
Score = 38.9 bits (89), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 1/98 (1%)
Query: 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR 194
+ + + + YVV+ + A F M G +VF NS++ +C G+ +A L+
Sbjct: 359 VVCYTVMITGYVVSGELDKAKEMFREMTVKGQLPNVFTYNSMIRGLCMAGEFREACWLLK 418
Query: 195 VVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMV 231
++ R P+ Y+ L+ K ++ A+K EMV
Sbjct: 419 EMESRGCNPNFVVYSTLVSYLRKAGKLSEARKVIREMV 456
>sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protein At1g62590
OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1
Length = 634
Score = 93.6 bits (231), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 79/333 (23%), Positives = 150/333 (45%), Gaps = 5/333 (1%)
Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
TF ++ + ++ +A+ D M Q GC+ ++ +++ +C+ G T A L +
Sbjct: 192 TFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKM 251
Query: 197 DG-RIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
+ +I+ D + +++ K R V +A F EM + G P NV Y S LI+ L
Sbjct: 252 EAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETK-GIRP-NVVTYSS-LISCLCSY 308
Query: 256 DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHM 315
+ L M+E+ NP + F + + AE ++ M+ R PD
Sbjct: 309 GRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKR-SIDPDIFT 367
Query: 316 YNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
YN +++ +C + A ++ + MV FPD+ TYN L + K +++ + + LF EM
Sbjct: 368 YNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMS 427
Query: 376 KNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLP 435
V + ++ D A K +K M+ + T ++L+ GLC+ L
Sbjct: 428 HRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLE 487
Query: 436 EAVKYAKGMAEKGIQVTPFALSKLKQILIKARK 468
+A++ M + I++ + + + + + KA K
Sbjct: 488 KALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGK 520
Score = 66.2 bits (160), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 64/274 (23%), Positives = 109/274 (39%), Gaps = 40/274 (14%)
Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
T+ S+ + + + DR+ A F+ M C DV N+L+ C+ + D + R +
Sbjct: 367 TYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREM 426
Query: 197 DGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
R + D TY L++G + D NA+K F +MV + G PD + +Y I L
Sbjct: 427 SHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSD-GVPPDIM----TYSILL---- 477
Query: 256 DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHM 315
DG+ CN G L A ++ M + + D ++
Sbjct: 478 DGL--------------CNNG---------------KLEKALEVFDYM-QKSEIKLDIYI 507
Query: 316 YNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
Y MI C + + L + G P++ TYN + L R L EA L +M
Sbjct: 508 YTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMK 567
Query: 376 KNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYM 409
++ + N +R ++ D + + + M
Sbjct: 568 EDGPLPNSGTYNTLIRAHLRDGDKAASAELIREM 601
Score = 66.2 bits (160), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 98/405 (24%), Positives = 158/405 (39%), Gaps = 91/405 (22%)
Query: 104 WNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVME 162
+N ++D L K D + K M+ + + ++ T++S+ S R DA M
Sbjct: 263 FNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMI 322
Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERDVA 221
+ ++ N+L+ A ++GK ++A + ++ I PD TY L+ G+ +
Sbjct: 323 EKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLD 382
Query: 222 NAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG-CDGIYETVNSLKRMMERGCNPGMTFF 280
AK+ F E ++ PD V Y+ TL+KG C KR+ + G F
Sbjct: 383 KAKQMF-EFMVSKDCFPD-VVTYN----TLIKGFCKS--------KRVED-----GTELF 423
Query: 281 KLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMV 340
+ L G DT Y +I + + A K+ +MV
Sbjct: 424 REMSHRGLVG---------------------DTVTYTTLIQGLFHDGDCDNAQKVFKQMV 462
Query: 341 YNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPY 400
+G PDI TY+IL + L KL +A +F+ M K+E L+
Sbjct: 463 SDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLD------------------ 504
Query: 401 VAIKFWKYMIENHCS------------DLSETG--------NLLVAGLCDMHMLPEAVKY 440
I + MIE C LS G N +++GLC +L EA
Sbjct: 505 --IYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYAL 562
Query: 441 AKGMAEKGIQVTPFALSKLKQILIKAR----KEAVYEELLKKCKA 481
K M E G P S LI+A +A EL+++ ++
Sbjct: 563 LKKMKEDG----PLPNSGTYNTLIRAHLRDGDKAASAELIREMRS 603
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 91/221 (41%), Gaps = 11/221 (4%)
Query: 265 LKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYC 324
L +MM+ G P + G+ + A + MV +G+RPDT + +I
Sbjct: 143 LGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMV-EMGYRPDTITFTTLIHGLF 201
Query: 325 YSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNE---NVL 381
N+ A+ L+D MV G P++ TY ++ L K A L N+M + +V+
Sbjct: 202 LHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVV 261
Query: 382 NHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYA 441
++ Y DD A+ +K M T + L++ LC +A +
Sbjct: 262 IFNTIIDSLCKYRHVDD---ALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLL 318
Query: 442 KGMAEKGIQVTPFALSKLKQILIKARK----EAVYEELLKK 478
M EK I + L +K K E +Y++++K+
Sbjct: 319 SDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKR 359
Score = 39.7 bits (91), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 28/129 (21%), Positives = 56/129 (43%)
Query: 301 GAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVK 360
G + R+ + YN++I+ +C ++ A+ LL +M+ G P I T + L
Sbjct: 108 GEKMQRLEIVHGLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCH 167
Query: 361 GRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSET 420
G+++ +A L ++MV+ + + + A+ M++ C T
Sbjct: 168 GKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVT 227
Query: 421 GNLLVAGLC 429
++V GLC
Sbjct: 228 YGVVVNGLC 236
>sp|Q9C8T7|PP101_ARATH Pentatricopeptide repeat-containing protein At1g63330
OS=Arabidopsis thaliana GN=At1g63330 PE=2 SV=2
Length = 559
Score = 92.0 bits (227), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 79/333 (23%), Positives = 149/333 (44%), Gaps = 5/333 (1%)
Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
TF ++ + ++ +A+ D M Q GC+ ++ +++ +C+ G A+ L +
Sbjct: 117 TFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKM 176
Query: 197 DG-RIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
+ +I+ D + +++ K R V +A F EM + G P NV Y S LI+ L
Sbjct: 177 EAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETK-GIRP-NVVTYSS-LISCLCSY 233
Query: 256 DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHM 315
+ L M+E+ NP + F + + AE + M+ R PD
Sbjct: 234 GRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKR-SIDPDIFT 292
Query: 316 YNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
YN +I+ +C + A ++ + MV FPD+ TYN L + K +++ + + LF EM
Sbjct: 293 YNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMS 352
Query: 376 KNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLP 435
V + ++ D A K +K M+ + T ++L+ GLC+ L
Sbjct: 353 HRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLE 412
Query: 436 EAVKYAKGMAEKGIQVTPFALSKLKQILIKARK 468
+A++ M + I++ + + + + + KA K
Sbjct: 413 KALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGK 445
Score = 68.9 bits (167), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 100/405 (24%), Positives = 159/405 (39%), Gaps = 91/405 (22%)
Query: 104 WNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVME 162
+N ++D L K D + K M+ + + ++ T++S+ S R DA M
Sbjct: 188 FNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMI 247
Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERDVA 221
+ ++ N+L+ A ++GK ++A + ++ I PD TY L+ G+ +
Sbjct: 248 EKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLD 307
Query: 222 NAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG-CDGIYETVNSLKRMMERGCNPGMTFF 280
AK+ F MV D P D+Y TL+KG C KR+ + G F
Sbjct: 308 KAKQMFEFMV-----SKDCFPDLDTY-NTLIKGFCKS--------KRVED-----GTELF 348
Query: 281 KLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMV 340
+ E +VG DT Y +I + + A K+ +MV
Sbjct: 349 R---------------EMSHRGLVG------DTVTYTTLIQGLFHDGDCDNAQKVFKQMV 387
Query: 341 YNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPY 400
+G PDI TY+IL + L KL +A +F+ M K+E L+
Sbjct: 388 SDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLD------------------ 429
Query: 401 VAIKFWKYMIENHCS------------DLSETG--------NLLVAGLCDMHMLPEAVKY 440
I + MIE C LS G N +++GLC +L EA
Sbjct: 430 --IYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYAL 487
Query: 441 AKGMAEKGIQVTPFALSKLKQILIKAR----KEAVYEELLKKCKA 481
K M E G P S LI+A +A EL+++ ++
Sbjct: 488 LKKMKEDG----PLPDSGTYNTLIRAHLRDGDKAASAELIREMRS 528
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 92/221 (41%), Gaps = 11/221 (4%)
Query: 265 LKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYC 324
L +MM+ G P + G+ + A + MV +G+RPDT + +I
Sbjct: 68 LGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMV-EMGYRPDTITFTTLIHGLF 126
Query: 325 YSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNE---NVL 381
N+ A+ L+D MV G P++ TY ++ L K + A L N+M + +V+
Sbjct: 127 LHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVV 186
Query: 382 NHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYA 441
++ Y DD A+ +K M T + L++ LC +A +
Sbjct: 187 IFNTIIDSLCKYRHVDD---ALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLL 243
Query: 442 KGMAEKGIQVTPFALSKLKQILIKARK----EAVYEELLKK 478
M EK I + L +K K E ++++++K+
Sbjct: 244 SDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKR 284
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 58/130 (44%)
Query: 300 WGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLV 359
G + R+G + + YN++I+ +C ++ A+ LL +M+ G P I T + L
Sbjct: 32 LGEKMQRLGISHNLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYC 91
Query: 360 KGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSE 419
G+++ +A L ++MV+ + + + A+ M++ C
Sbjct: 92 HGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLV 151
Query: 420 TGNLLVAGLC 429
T ++V GLC
Sbjct: 152 TYGVVVNGLC 161
>sp|Q9LQ16|PPR94_ARATH Pentatricopeptide repeat-containing protein At1g62910
OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1
Length = 632
Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 76/303 (25%), Positives = 137/303 (45%), Gaps = 5/303 (1%)
Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
TF ++ + ++ +A+ D M Q GC+ D+ ++++ +C+ G A L+ +
Sbjct: 190 TFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKM 249
Query: 197 D-GRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
+ G+I+ D Y +++G K + + +A F EM + G PD V Y S LI+ L
Sbjct: 250 EKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNK-GIRPD-VFTYSS-LISCLCNY 306
Query: 256 DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHM 315
+ L M+ER NP + F + + L AE ++ M+ R PD
Sbjct: 307 GRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKR-SIDPDIFT 365
Query: 316 YNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
Y+ +I+ +C + A + + M+ FP++ TY+ L + K +++ E LF EM
Sbjct: 366 YSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMS 425
Query: 376 KNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLP 435
+ V N + + + D A +K M+ T N+L+ GLC L
Sbjct: 426 QRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLA 485
Query: 436 EAV 438
+A+
Sbjct: 486 KAM 488
Score = 85.1 bits (209), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 96/387 (24%), Positives = 161/387 (41%), Gaps = 50/387 (12%)
Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVLS-LATFASVFSSYVVADRVKDAITTFDVM 161
+ VV+ L K D +K M+K + + + + ++ + DA+ F M
Sbjct: 225 TYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEM 284
Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYAILLEGWEKERDV 220
+ G + DVF +SL+S +C G+ DA + L +++ +I P+ T++ L++ + KE +
Sbjct: 285 DNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKL 344
Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFF 280
A+K + EM I+ DPD + Y S LI D + E + + M+ + C P + +
Sbjct: 345 VEAEKLYDEM-IKRSIDPD-IFTYSS-LINGFCMHDRLDEAKHMFELMISKDCFPNVVTY 401
Query: 281 KLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMV 340
+ + + ++ M R G +T Y +I + + + A + +MV
Sbjct: 402 STLIKGFCKAKRVEEGMELFREMSQR-GLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMV 460
Query: 341 YNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPY 400
G P+I TYNIL + L K KL +A +F + R M+ D
Sbjct: 461 SVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYL---------------QRSTMEPD--- 502
Query: 401 VAIKFWKYMIENHCS------------DLSETG--------NLLVAGLCDMHMLPEAVKY 440
I + MIE C +LS G N +++G C EA
Sbjct: 503 --IYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSL 560
Query: 441 AKGMAEKGIQVTPFALSKLKQILIKAR 467
K M E G P S LI+AR
Sbjct: 561 LKKMKEDG----PLPNSGTYNTLIRAR 583
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 83/401 (20%), Positives = 163/401 (40%), Gaps = 47/401 (11%)
Query: 105 NLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQY 164
N + D++ + D D +KS S+ F + S+ ++ + I+ + M+
Sbjct: 56 NRLSDIIKVDDAVDLFGDMVKS---RPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTL 112
Query: 165 GCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERDVANA 223
G HD++ + ++ CR + A L +++ +PD T + LL G+ + +++A
Sbjct: 113 GISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDA 172
Query: 224 KKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC---DGIYETVNSLKRMMERGCNPGMTFF 280
+MV E+G+ PD TL+ G + E V + +M++RGC P + +
Sbjct: 173 VALVDQMV-EMGYKPDTFT-----FTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTY 226
Query: 281 ---------------KLAFEECLTGQNLRGAEFIWGAMVGRI------------------ 307
L+ + + + I+ ++ +
Sbjct: 227 GTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDN 286
Query: 308 -GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWE 366
G RPD Y+ +IS C A +LL +M+ P++ T++ L + VK KL E
Sbjct: 287 KGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVE 346
Query: 367 ASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVA 426
A L++EM+K + + + + D A ++ MI C T + L+
Sbjct: 347 AEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIK 406
Query: 427 GLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKAR 467
G C + E ++ + M+++G+ + L +AR
Sbjct: 407 GFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQAR 447
Score = 70.5 bits (171), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 106/240 (44%), Gaps = 7/240 (2%)
Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
T++S+ + + + DR+ +A F++M C +V ++L+ C+ + + + R +
Sbjct: 365 TYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREM 424
Query: 197 DGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
R + + TY L+ G+ + RD NA+ F +MV VG P N+ Y+ L L K
Sbjct: 425 SQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMV-SVGVHP-NILTYNILLDGLCKN- 481
Query: 256 DGIYETVNSLKRMMERGCNPGMTFFKLAFEE-CLTGQNLRGAEFIWGAMVGRIGFRPDTH 314
+ + + + + P + + + E C G+ G E + G P+
Sbjct: 482 GKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLK--GVSPNVI 539
Query: 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
YN MIS +C A LL +M +G P+ TYN L ++ ++ L EM
Sbjct: 540 AYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRARLRDGDREASAELIKEM 599
>sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670,
mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2
SV=2
Length = 630
Score = 91.3 bits (225), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 81/334 (24%), Positives = 151/334 (45%), Gaps = 5/334 (1%)
Query: 136 ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-R 194
TF ++ + ++ +A+ D M GC+ D+ +++ +C+ G T A+ L +
Sbjct: 187 VTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNK 246
Query: 195 VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG 254
+ G+++P Y +++G K + + +A F EM + G P NV Y S LI+ L
Sbjct: 247 MEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETK-GIRP-NVVTYSS-LISCLCN 303
Query: 255 CDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTH 314
+ L M+ER NP + F + + L AE ++ MV R P
Sbjct: 304 YGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKR-SIDPSIV 362
Query: 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
Y+ +I+ +C + A ++ + MV FPD+ TYN L + K +++ E +F EM
Sbjct: 363 TYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREM 422
Query: 375 VKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHML 434
+ V N ++ + D +A + +K M+ + T N L+ GLC L
Sbjct: 423 SQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKL 482
Query: 435 PEAVKYAKGMAEKGIQVTPFALSKLKQILIKARK 468
+A+ + + ++ T + + + + + KA K
Sbjct: 483 EKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGK 516
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 79/382 (20%), Positives = 156/382 (40%), Gaps = 41/382 (10%)
Query: 99 HSPYAWNLVVDLLGKNCLFDAMWDAI-KSMKKENVLSLATFASVFSSYVVADRVKDAITT 157
H+ Y ++++++ + + K MK ++ T +S+ + Y + R+ +A+
Sbjct: 114 HNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVAL 173
Query: 158 FDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEK 216
D M G + + N+L+ + K +A + R+V +PD TY +++ G K
Sbjct: 174 VDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCK 233
Query: 217 ERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPG 276
D A N L +M + PG
Sbjct: 234 RGDTDLA--------------------------------------FNLLNKMEQGKLEPG 255
Query: 277 MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLL 336
+ + + +++ A ++ M + G RP+ Y+ +IS C A +LL
Sbjct: 256 VLIYNTIIDGLCKYKHMDDALNLFKEMETK-GIRPNVVTYSSLISCLCNYGRWSDASRLL 314
Query: 337 DEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDS 396
+M+ PD+ T++ L + VK KL EA L++EMVK + + + +
Sbjct: 315 SDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMH 374
Query: 397 DDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFAL 456
D A + +++M+ HC T N L+ G C + E ++ + M+++G+
Sbjct: 375 DRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTY 434
Query: 457 SKLKQILIKARKEAVYEELLKK 478
+ L Q L +A + +E+ K+
Sbjct: 435 NILIQGLFQAGDCDMAQEIFKE 456
Score = 73.6 bits (179), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/244 (25%), Positives = 108/244 (44%), Gaps = 9/244 (3%)
Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
S+ T++S+ + + + DR+ +A F+ M C DV N+L+ C+ + + +
Sbjct: 360 SIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVF 419
Query: 194 RVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
R + R + + TY IL++G + D A++ F EMV + P N+ Y++ L L
Sbjct: 420 REMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSD--GVPPNIMTYNTLLDGLC 477
Query: 253 KGCDGIYETVNSLKRMMERG-CNPGMTFFKLAFEE-CLTGQNLRGAEFIWGAMVGRIGFR 310
K +G E + ++R P + + + E C G+ G + + G +
Sbjct: 478 K--NGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLK--GVK 533
Query: 311 PDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGL 370
PD YN MIS +C A L EM +G P+ YN L ++ ++ L
Sbjct: 534 PDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAEL 593
Query: 371 FNEM 374
EM
Sbjct: 594 IKEM 597
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 68/273 (24%), Positives = 122/273 (44%), Gaps = 12/273 (4%)
Query: 104 WNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVME 162
+N ++D L K D + K M+ + + ++ T++S+ S R DA M
Sbjct: 259 YNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMI 318
Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERDVA 221
+ DVF ++L+ A ++GK ++A + +V I P TY+ L+ G+ +
Sbjct: 319 ERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLD 378
Query: 222 NAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG-C--DGIYETVNSLKRMMERGCNPGMT 278
AK+ F E ++ PD V Y+ TL+KG C + E + + M +RG
Sbjct: 379 EAKQMF-EFMVSKHCFPD-VVTYN----TLIKGFCKYKRVEEGMEVFREMSQRGLVGNTV 432
Query: 279 FFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDE 338
+ + + + A+ I+ MV G P+ YN ++ C + + AM + +
Sbjct: 433 TYNILIQGLFQAGDCDMAQEIFKEMVSD-GVPPNIMTYNTLLDGLCKNGKLEKAMVVFEY 491
Query: 339 MVYNGAFPDIQTYNILFEFLVKGRKLWEASGLF 371
+ + P I TYNI+ E + K K+ + LF
Sbjct: 492 LQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLF 524
Score = 34.7 bits (78), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/129 (20%), Positives = 54/129 (41%)
Query: 301 GAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVK 360
G + +G + + Y+++I+ +C ++ A+ +L +M+ G P+I T + L
Sbjct: 104 GEQMQNLGIPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCH 163
Query: 361 GRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSET 420
+++ EA L ++M N + + A+ M+ C T
Sbjct: 164 SKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVT 223
Query: 421 GNLLVAGLC 429
++V GLC
Sbjct: 224 YGVVVNGLC 232
>sp|Q9M302|PP270_ARATH Pentatricopeptide repeat-containing protein At3g48810
OS=Arabidopsis thaliana GN=At3g48810 PE=2 SV=1
Length = 659
Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 91/353 (25%), Positives = 155/353 (43%), Gaps = 24/353 (6%)
Query: 104 WNLVVD-LLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVM 161
+N V+D LLG+N ++ + MK++ ++ T+ + + ++V A M
Sbjct: 149 YNHVLDTLLGEN-RIQMIYMVYRDMKRDGFEPNVFTYNVLLKALCKNNKVDGAKKLLVEM 207
Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVA 221
GC D + +++S++C G + R + R +P Y L+ G KE D
Sbjct: 208 SNKGCCPDAVSYTTVISSMCEVGLVKEG----RELAERFEPVVSVYNALINGLCKEHDYK 263
Query: 222 NAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFK 281
A + EMV E G P NV +Y S LI +L I + L +M++RGC+P +
Sbjct: 264 GAFELMREMV-EKGISP-NVISY-STLINVLCNSGQIELAFSFLTQMLKRGCHPNIYTLS 320
Query: 282 LAFEECLTGQNLRGAEF----IWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLD 337
+ C LRG F +W M+ G +P+ YN ++ +C A+ +
Sbjct: 321 SLVKGCF----LRGTTFDALDLWNQMIRGFGLQPNVVAYNTLVQGFCSHGNIVKAVSVFS 376
Query: 338 EMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKN---ENVLNHENCRAAVRVYM 394
M G P+I+TY L K L A ++N+M+ + NV+ + N A+ +
Sbjct: 377 HMEEIGCSPNIRTYGSLINGFAKRGSLDGAVYIWNKMLTSGCCPNVVVYTNMVEALCRHS 436
Query: 395 DSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEK 447
+ I+ M + +C+ T N + GLCD L A K + M ++
Sbjct: 437 KFKEAESLIEI---MSKENCAPSVPTFNAFIKGLCDAGRLDWAEKVFRQMEQQ 486
Score = 69.7 bits (169), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 78/328 (23%), Positives = 136/328 (41%), Gaps = 34/328 (10%)
Query: 117 FDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSL 176
F+ M + ++ NV+S +T +V + + +++ A + M + GC +++ L+SL
Sbjct: 266 FELMREMVEKGISPNVISYSTLINVLCN---SGQIELAFSFLTQMLKRGCHPNIYTLSSL 322
Query: 177 LSAICRDGKTIDA---W-QFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVI 232
+ G T DA W Q +R ++P+ Y L++G+ ++ A F M
Sbjct: 323 VKGCFLRGTTFDALDLWNQMIRGFG--LQPNVVAYNTLVQGFCSHGNIVKAVSVFSHME- 379
Query: 233 EVGWDPDNVPAYDSYLITLLK--GCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTG 290
E+G P N+ Y S + K DG N +M+ GC P + + E
Sbjct: 380 EIGCSP-NIRTYGSLINGFAKRGSLDGAVYIWN---KMLTSGCCPNVVVYTNMVEALCRH 435
Query: 291 QNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEM-VYNGAFPDIQ 349
+ AE + M + P +N I C + A K+ +M + P+I
Sbjct: 436 SKFKEAESLIEIM-SKENCAPSVPTFNAFIKGLCDAGRLDWAEKVFRQMEQQHRCPPNIV 494
Query: 350 TYNILFEFLVKGRKLWEASGLFNEMV--------KNENVLNHENCRAAVRVYMDSDDPYV 401
TYN L + L K ++ EA GL E+ N L H +C A + P +
Sbjct: 495 TYNELLDGLAKANRIEEAYGLTREIFMRGVEWSSSTYNTLLHGSCNAGL--------PGI 546
Query: 402 AIKFWKYMIENHCSDLSETGNLLVAGLC 429
A++ M+ + S T N+++ C
Sbjct: 547 ALQLVGKMMVDGKSPDEITMNMIILAYC 574
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 93/216 (43%), Gaps = 10/216 (4%)
Query: 149 DRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDG--RIKPDNDT 206
+ K+A + ++M + C V N+ + +C G+ A + R ++ R P+ T
Sbjct: 436 SKFKEAESLIEIMSKENCAPSVPTFNAFIKGLCDAGRLDWAEKVFRQMEQQHRCPPNIVT 495
Query: 207 YAILLEGWEKERDVANAKKTFGEMVIE-VGWDPDNVPAYDSYLI-TLLKGCDGIYETVNS 264
Y LL+G K + A E+ + V W Y++ L + G GI +
Sbjct: 496 YNELLDGLAKANRIEEAYGLTREIFMRGVEWSSS---TYNTLLHGSCNAGLPGI--ALQL 550
Query: 265 LKRMMERGCNPG-MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLY 323
+ +MM G +P +T + C G+ R A+ + GR +RPD Y +I
Sbjct: 551 VGKMMVDGKSPDEITMNMIILAYCKQGKAERAAQMLDLVSCGRRKWRPDVISYTNVIWGL 610
Query: 324 CYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLV 359
C SN + LL+ M+ G P I T+++L +
Sbjct: 611 CRSNCREDGVILLERMISAGIVPSIATWSVLINCFI 646
Score = 55.8 bits (133), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 84/205 (40%), Gaps = 18/205 (8%)
Query: 261 TVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMI 320
V R+ E GC+P + + + L ++ ++ M R GF P+ YN+++
Sbjct: 130 AVEMFYRIKEFGCDPSVKIYNHVLDTLLGENRIQMIYMVYRDM-KRDGFEPNVFTYNVLL 188
Query: 321 SLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVK------GRKLWEASGLFNEM 374
C +N+ A KLL EM G PD +Y + + + GR+L E F +
Sbjct: 189 KALCKNNKVDGAKKLLVEMSNKGCCPDAVSYTTVISSMCEVGLVKEGRELAER---FEPV 245
Query: 375 VKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHML 434
V N L + C+ D A + + M+E S + + L+ LC+ +
Sbjct: 246 VSVYNALINGLCK--------EHDYKGAFELMREMVEKGISPNVISYSTLINVLCNSGQI 297
Query: 435 PEAVKYAKGMAEKGIQVTPFALSKL 459
A + M ++G + LS L
Sbjct: 298 ELAFSFLTQMLKRGCHPNIYTLSSL 322
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/249 (20%), Positives = 108/249 (43%), Gaps = 15/249 (6%)
Query: 129 KENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTID 188
+ NV++ T F S+ + A++ F ME+ GC ++ SL++ + G ++D
Sbjct: 349 QPNVVAYNTLVQGFCSH---GNIVKAVSVFSHMEEIGCSPNIRTYGSLINGFAKRG-SLD 404
Query: 189 AWQFL--RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDS 246
++ +++ P+ Y ++E + A+ E++ + P +VP +++
Sbjct: 405 GAVYIWNKMLTSGCCPNVVVYTNMVEALCRHSKFKEAESLI-EIMSKENCAP-SVPTFNA 462
Query: 247 YLITLLKGCD-GIYETVNSLKRMMERG--CNPGMTFFKLAFEECLTGQNLRGAEFIWGAM 303
++ L CD G + + R ME+ C P + + + + A + +
Sbjct: 463 FIKGL---CDAGRLDWAEKVFRQMEQQHRCPPNIVTYNELLDGLAKANRIEEAYGLTREI 519
Query: 304 VGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRK 363
R G + YN ++ C + G A++L+ +M+ +G PD T N++ K K
Sbjct: 520 FMR-GVEWSSSTYNTLLHGSCNAGLPGIALQLVGKMMVDGKSPDEITMNMIILAYCKQGK 578
Query: 364 LWEASGLFN 372
A+ + +
Sbjct: 579 AERAAQMLD 587
Score = 40.0 bits (92), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 64/165 (38%), Gaps = 9/165 (5%)
Query: 304 VGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRK 363
+ G P +YN ++ N + +M +G P++ TYN+L + L K K
Sbjct: 137 IKEFGCDPSVKIYNHVLDTLLGENRIQMIYMVYRDMKRDGFEPNVFTYNVLLKALCKNNK 196
Query: 364 LWEASGLFNEMVKNENVLNHENCRAAVR--VYMDSDDPYVAIKFWKYMIENHCSDLSETG 421
+ A L EM N C AV + S +K + + E +
Sbjct: 197 VDGAKKLLVEMS------NKGCCPDAVSYTTVISSMCEVGLVKEGRELAERF-EPVVSVY 249
Query: 422 NLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKA 466
N L+ GLC H A + + M EKGI + S L +L +
Sbjct: 250 NALINGLCKEHDYKGAFELMREMVEKGISPNVISYSTLINVLCNS 294
>sp|Q9SZ10|PP338_ARATH Pentatricopeptide repeat-containing protein At4g26680,
mitochondrial OS=Arabidopsis thaliana GN=At4g26680 PE=2
SV=1
Length = 521
Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 93/417 (22%), Positives = 175/417 (41%), Gaps = 28/417 (6%)
Query: 84 AVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDA-------------------MWDAI 124
+++FF W+ + HS +V+ L KN F + ++DA+
Sbjct: 98 SLEFFNWAKTRNPGSHSLETHAIVLHTLTKNRKFKSAESILRDVLVNGGVDLPAKVFDAL 157
Query: 125 KSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDG 184
+E + F S+F ++ + ++A TF M+ YG V + N+ +S++ G
Sbjct: 158 LYSYRECDSTPRVFDSLFKTFAHLKKFRNATDTFMQMKDYGFLPTVESCNAYMSSLLGQG 217
Query: 185 KTIDAWQFLRVVDG-RIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPA 243
+ A +F R + +I P+ T +++ G+ + + + +M +G+ +V
Sbjct: 218 RVDIALRFYREMRRCKISPNPYTLNMVMSGYCRSGKLDKGIELLQDME-RLGFRATDV-- 274
Query: 244 YDSYLITLLKGCD-GIYETVNSLKRMMER-GCNPGMTFFKLAFEECLTGQNLRGAEFIWG 301
SY + C+ G+ + LK MM + G P + F L+ A ++G
Sbjct: 275 --SYNTLIAGHCEKGLLSSALKLKNMMGKSGLQPNVVTFNTLIHGFCRAMKLQEASKVFG 332
Query: 302 AMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKG 361
M + P+T YN +I+ Y + A + ++MV NG DI TYN L L K
Sbjct: 333 EMKA-VNVAPNTVTYNTLINGYSQQGDHEMAFRFYEDMVCNGIQRDILTYNALIFGLCKQ 391
Query: 362 RKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETG 421
K +A+ E+ K V N A + + + +K MI + C +T
Sbjct: 392 AKTRKAAQFVKELDKENLVPNSSTFSALIMGQCVRKNADRGFELYKSMIRSGCHPNEQTF 451
Query: 422 NLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKK 478
N+LV+ C A + + M + I + + ++ L K+ + ++LL++
Sbjct: 452 NMLVSAFCRNEDFDGASQVLREMVRRSIPLDSRTVHQVCNGLKHQGKDQLVKKLLQE 508
>sp|Q0WP85|PP150_ARATH Pentatricopeptide repeat-containing protein At2g13420,
mitochondrial OS=Arabidopsis thaliana GN=At2g13420 PE=2
SV=1
Length = 509
Score = 90.5 bits (223), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 123/490 (25%), Positives = 192/490 (39%), Gaps = 45/490 (9%)
Query: 18 HNKRKR-STFAS---HLDVPNLPPT----IKTLCEIIANTPSPTVEDVLDKTLIRVSQET 69
H R+R ST S L++P L P+ + + I + P +E L I ++
Sbjct: 14 HQLRRRISTIISAGFTLNLPKLEPSSDAELISQMLITNHNPFHFMESSLQLNGISLTPNL 73
Query: 70 VEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKK 129
+ Q L + A+ FF++ + +P ++NL++D+LG+ FD + I M +
Sbjct: 74 IHQTLLRLRHNSKIALSFFQYLRSLPSPSTTPTSFNLIIDILGRVRQFDVVRQLIVEMDQ 133
Query: 130 ENVLSLATFASVFSSYVVADRVKDAITTFDVMEQY--GCKHDVFALNSLLSAICRDGKTI 187
S TF + + A + A+ FD + + + LL +C+ G T
Sbjct: 134 T---SPETFLILVKRLIAAGLTRQAVRAFDDAPCFLENRRFRLVEFGFLLDTLCKYGYTK 190
Query: 188 DAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSY 247
A D Y IL+ GW K R + A+K EM IE G +P NV Y+
Sbjct: 191 MAVGVFNERKEEFGSDEKVYTILIAGWCKLRRIDMAEKFLVEM-IESGIEP-NVVTYNVL 248
Query: 248 LITLLKGCD---------GIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEF 298
L + + + M +RG P +T F + AE
Sbjct: 249 LNGICRTASLHPEERFERNVRNAEKVFDEMRQRGIEPDVTSFSIVLHMYSRAHK---AEL 305
Query: 299 IWGAM--VGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFE 356
M + G P Y ++ C A +LL+ MV +G P TYN F+
Sbjct: 306 TLDKMKLMKAKGISPTIETYTSVVKCLCSCGRLEEAEELLETMVESGISPSSATYNCFFK 365
Query: 357 FLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSD 416
KGRK +A+G N K +N L C+ + + Y ++ + + ++ D
Sbjct: 366 -EYKGRK--DANGAMNLYRKMKNGL----CKPSTQTYNVLLGTFINLGKME-TVKEIWDD 417
Query: 417 L--SETG------NLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARK 468
L SETG LV GLC EA Y M E+G L + LI++ K
Sbjct: 418 LKASETGPDLDSYTSLVHGLCSKEKWKEACGYFVEMIERGFLPQKLTFETLYKGLIQSNK 477
Query: 469 EAVYEELLKK 478
+ L KK
Sbjct: 478 MRTWRRLKKK 487
>sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900
OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1
Length = 598
Score = 90.1 bits (222), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 80/336 (23%), Positives = 148/336 (44%), Gaps = 42/336 (12%)
Query: 138 FASVFSSYVVAD-----RVKDAITTFDVMEQY---------GCKHDVFALNSLLSAICRD 183
++SV SS+ + D ++ + T ++ E + G D+ +L+ CR
Sbjct: 91 YSSVNSSFALEDVESNNHLRQMVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRL 150
Query: 184 GKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVP 242
GKT A + L +++G PD TY +++ G+ K ++ NA M + PD V
Sbjct: 151 GKTRKAAKILEILEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRMSV----SPD-VV 205
Query: 243 AYDSYLITLLKGCDG--IYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIW 300
Y++ L +L CD + + + L RM++R C P + + + E + A +
Sbjct: 206 TYNTILRSL---CDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLL 262
Query: 301 GAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVK 360
M R G PD YN++++ C A+K L++M +G P++ T+NI+ +
Sbjct: 263 DEMRDR-GCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCS 321
Query: 361 GRKLWEASGLFNEMVKNE--------NVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIEN 412
+ +A L +M++ N+L + CR + AI + M ++
Sbjct: 322 TGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGR--------AIDILEKMPQH 373
Query: 413 HCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448
C S + N L+ G C + A++Y + M +G
Sbjct: 374 GCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRG 409
Score = 82.4 bits (202), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 93/377 (24%), Positives = 150/377 (39%), Gaps = 61/377 (16%)
Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL-RV 195
T+ + S Y A + +A++ D M DV N++L ++C GK A + L R+
Sbjct: 174 TYNVMISGYCKAGEINNALSVLDRMS---VSPDVVTYNTILRSLCDSGKLKQAMEVLDRM 230
Query: 196 VDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
+ PD TY IL+E ++ V +A K EM + G PD V Y+ + + K
Sbjct: 231 LQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMR-DRGCTPD-VVTYNVLVNGICK-- 286
Query: 256 DG-IYETVNSLKRMMERGCNPGMTFFKLAFEE-CLTGQNLRGAEFIWGAMVGRIGFRPDT 313
+G + E + L M GC P + + C TG+ + AE + M+ R GF P
Sbjct: 287 EGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWM-DAEKLLADML-RKGFSPSV 344
Query: 314 HMYNMMISLYCYSNETGAAMKLLDEM---------------------------------- 339
+N++I+ C G A+ +L++M
Sbjct: 345 VTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLER 404
Query: 340 -VYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDD 398
V G +PDI TYN + L K K+ +A + N+ L+ + C + Y D
Sbjct: 405 MVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQ-------LSSKGCSPVLITYNTVID 457
Query: 399 PYV-------AIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQV 451
AIK M + T + LV GL + EA+K+ GI+
Sbjct: 458 GLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRP 517
Query: 452 TPFALSKLKQILIKARK 468
+ + L K+R+
Sbjct: 518 NAVTFNSIMLGLCKSRQ 534
Score = 77.4 bits (189), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 85/338 (25%), Positives = 141/338 (41%), Gaps = 46/338 (13%)
Query: 151 VKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYAI 209
V A+ D M GC DV N L++ IC++G+ +A +FL + +P+ T+ I
Sbjct: 255 VGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNI 314
Query: 210 LLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL--KGCDGIYETVNSLKR 267
+L +A+K +M + G+ P V + LI L KG G ++ L++
Sbjct: 315 ILRSMCSTGRWMDAEKLLADM-LRKGFSPSVVTF--NILINFLCRKGLLG--RAIDILEK 369
Query: 268 MMERGCNP-GMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYS 326
M + GC P +++ L C + R E++ MV R G PD YN M++ C
Sbjct: 370 MPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLE-RMVSR-GCYPDIVTYNTMLTALCKD 427
Query: 327 NETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM------------ 374
+ A+++L+++ G P + TYN + + L K K +A L +EM
Sbjct: 428 GKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITY 487
Query: 375 ------VKNENVLN------HENCRAAVR-----------VYMDSDDPYVAIKFWKYMIE 411
+ E ++ HE R +R S AI F +MI
Sbjct: 488 SSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMIN 547
Query: 412 NHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
C + +L+ GL M EA++ + KG+
Sbjct: 548 RGCKPNETSYTILIEGLAYEGMAKEALELLNELCNKGL 585
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 64/142 (45%), Gaps = 5/142 (3%)
Query: 94 QLNDKH-SPY--AWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVAD 149
QL+ K SP +N V+D L K + M+ +++ T++S+
Sbjct: 439 QLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREG 498
Query: 150 RVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYA 208
+V +AI F E+ G + + NS++ +C+ +T A FL + R KP+ +Y
Sbjct: 499 KVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYT 558
Query: 209 ILLEGWEKERDVANAKKTFGEM 230
IL+EG E A + E+
Sbjct: 559 ILIEGLAYEGMAKEALELLNEL 580
>sp|Q9FZD4|PPR59_ARATH Putative pentatricopeptide repeat-containing protein At1g26500
OS=Arabidopsis thaliana GN=At1g26500 PE=3 SV=1
Length = 505
Score = 89.4 bits (220), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 110/488 (22%), Positives = 199/488 (40%), Gaps = 77/488 (15%)
Query: 26 FASHLDVPNLPPT----IKTLCEII---ANTPSPTVEDVLDKTLIRVSQETVEQVLKFSY 78
F++ L + P + +C I+ N+P + L T +++ E QV
Sbjct: 29 FSTELTPTTITPINQDHLLRVCTILYQQQNSPDSRLVSKLSSTKFQLTHEFFLQVCNNFP 88
Query: 79 SHPGPAVKFFRWSAYQLND-KHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLAT 137
P +FF +S D H+ N ++ ++G + D W+ + + K +++ T
Sbjct: 89 LSWRPVHRFFLYSQTHHPDFTHTSTTSNKMLAIIGNSRNMDLFWELAQEIGKRGLVNDKT 148
Query: 138 FASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRV-V 196
F V + A +K + F +M +G ++V +N + +C++ K ++ +F+ + +
Sbjct: 149 FRIVLKTLASARELKKCVNYFHLMNGFGYLYNVETMNRGVETLCKE-KLVEEAKFVFIKL 207
Query: 197 DGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD 256
IKPD TY +++G+ D+ A K + M+ E G+D D + A + TLLK
Sbjct: 208 KEFIKPDEITYRTMIQGFCDVGDLIEAAKLWNLMMDE-GFDVD-IEAGKKIMETLLK--- 262
Query: 257 GIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMY 316
K F+E A ++ MV + G D Y
Sbjct: 263 ------------------------KNQFDE---------ASKVFYVMVSKRGGDLDGGFY 289
Query: 317 NMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK 376
+MI C + A K+ DEM G + D T+ L L+ R++ EA GL E V+
Sbjct: 290 RVMIDWLCKNGRIDMARKVFDEMRERGVYVDNLTWASLIYGLLVKRRVVEAYGLV-EGVE 348
Query: 377 NENV-LNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSET------GNL------ 423
N ++ + H + V++ S+ A + ++ MI+ C + T G+L
Sbjct: 349 NPDISIYHGLIKGLVKIKRASE----ATEVFRKMIQRGCEPIMHTYLMLLQGHLGRRGRK 404
Query: 424 -----------LVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVY 472
V G+ E KY + ++G++V F SK ++
Sbjct: 405 GPDPLVNFDTIFVGGMIKAGKRLETTKYIERTLKRGLEVPRFDYSKFLHYYSNEEGVVMF 464
Query: 473 EELLKKCK 480
EE+ KK +
Sbjct: 465 EEMAKKLR 472
>sp|Q9FME4|PP438_ARATH Pentatricopeptide repeat-containing protein At5g60960,
mitochondrial OS=Arabidopsis thaliana GN=At5g60960 PE=2
SV=1
Length = 521
Score = 89.0 bits (219), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 102/412 (24%), Positives = 157/412 (38%), Gaps = 65/412 (15%)
Query: 68 ETVEQVLKFSYSH--PGP----------------AVKFFRWSAYQLNDKHSPYAWNLVVD 109
+T+ Q S+SH P P A+ F W N H+ + VD
Sbjct: 92 QTISQRFNLSFSHITPNPDLILQTLNLSPEAGRAALGFNEWLDSNSNFSHTDETVSFFVD 151
Query: 110 LLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQ-YGCKH 168
G+ F M + I K + T S V A R K F+ ME YG K
Sbjct: 152 YFGRRKDFKGMLEIISKYK--GIAGGKTLESAIDRLVRAGRPKQVTDFFEKMENDYGLKR 209
Query: 169 DVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFG 228
D +L ++ +C G A + ++ I PD + +L+ GW + A + G
Sbjct: 210 DKESLTLVVKKLCEKGHASIAEKMVKNTANEIFPDENICDLLISGWCIAEKLDEATRLAG 269
Query: 229 EMV---IEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLA-- 283
EM E+G AY+ L + K C R +P FKL
Sbjct: 270 EMSRGGFEIG-----TKAYNMMLDCVCKLC---------------RKKDP----FKLQPE 305
Query: 284 FEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNG 343
E+ L RG V R +T +N++I+ C T AM L M G
Sbjct: 306 VEKVLLEMEFRG--------VPR-----NTETFNVLINNLCKIRRTEEAMTLFGRMGEWG 352
Query: 344 AFPDIQTYNILFEFLVKGRKLWEASGLFNEM--VKNENVLNHENCRAAVRVYMDSDDPYV 401
PD +TY +L L + ++ E + ++M +LN + +++ +
Sbjct: 353 CQPDAETYLVLIRSLYQAARIGEGDEMIDKMKSAGYGELLNKKEYYGFLKILCGIERLEH 412
Query: 402 AIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTP 453
A+ +K M N C +T +LL+ +C + L A K A+KGI V+P
Sbjct: 413 AMSVFKSMKANGCKPGIKTYDLLMGKMCANNQLTRANGLYKEAAKKGIAVSP 464
>sp|Q8GYP6|PPR49_ARATH Pentatricopeptide repeat-containing protein At1g18900
OS=Arabidopsis thaliana GN=At1g18900 PE=1 SV=1
Length = 860
Score = 88.6 bits (218), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 83/349 (23%), Positives = 141/349 (40%), Gaps = 44/349 (12%)
Query: 52 PTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLL 111
P E+ L +R+ QVLK + G A+ FF W Q KH + + +V L
Sbjct: 316 PAAEEALQNLGLRIDAYQANQVLK-QMNDYGNALGFFYWLKRQPGFKHDGHTYTTMVGNL 374
Query: 112 GKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDV 170
G+ F A+ + M ++ + T+ + SY A+ + +A+ F+ M++ GCK D
Sbjct: 375 GRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDR 434
Query: 171 FALNSLLSAICRDG---KTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTF 227
+L+ + G +D +Q R+ G + PD TY++++ K + A K F
Sbjct: 435 VTYCTLIDIHAKAGFLDIAMDMYQ--RMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLF 492
Query: 228 GEMVIE----------------------------------VGWDPDNVPAYDSYLITLLK 253
EMV + G++PD V S ++ +L
Sbjct: 493 CEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTY--SIVMEVLG 550
Query: 254 GCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDT 313
C + E M ++ P + L + N+ A + AM+ G RP+
Sbjct: 551 HCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQWYQAML-HAGLRPNV 609
Query: 314 HMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGR 362
N ++S + N+ A +LL M+ G P +QTY +L GR
Sbjct: 610 PTCNSLLSTFLRVNKIAEAYELLQNMLALGLRPSLQTYTLLLSCCTDGR 658
Score = 63.2 bits (152), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 92/216 (42%), Gaps = 5/216 (2%)
Query: 159 DVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKER 218
+ ++ G + D + N +L + G + + +L+ G K D TY ++ + +
Sbjct: 320 EALQNLGLRIDAYQANQVLKQMNDYGNALGFFYWLKRQPG-FKHDGHTYTTMVGNLGRAK 378
Query: 219 DVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMT 278
K EMV + G P+ V Y+ LI + + E +N +M E GC P
Sbjct: 379 QFGAINKLLDEMVRD-GCQPNTV-TYNR-LIHSYGRANYLNEAMNVFNQMQEAGCKPDRV 435
Query: 279 FFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDE 338
+ + L A ++ M G PDT Y+++I+ + AA KL E
Sbjct: 436 TYCTLIDIHAKAGFLDIAMDMYQRMQAG-GLSPDTFTYSVIINCLGKAGHLPAAHKLFCE 494
Query: 339 MVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
MV G P++ TYNI+ + K R A L+ +M
Sbjct: 495 MVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDM 530
Score = 52.4 bits (124), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 3/170 (1%)
Query: 308 GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEA 367
GF+ D H Y M+ + + GA KLLDEMV +G P+ TYN L + L EA
Sbjct: 359 GFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEA 418
Query: 368 SGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAG 427
+FN+M + + + ++ + +A+ ++ M S + T ++++
Sbjct: 419 MNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINC 478
Query: 428 LCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLK 477
L LP A K M ++G + + + KAR Y+ LK
Sbjct: 479 LGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARN---YQNALK 525
>sp|Q9FNL2|PP418_ARATH Pentatricopeptide repeat-containing protein At5g46100
OS=Arabidopsis thaliana GN=At5g46100 PE=2 SV=1
Length = 472
Score = 87.8 bits (216), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 87/326 (26%), Positives = 136/326 (41%), Gaps = 18/326 (5%)
Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-- 191
S + +V + V +++ A + M + G V +LN L+ A+CR+ T+DA
Sbjct: 120 SQKAYVTVLAILVEENQLNLAFKFYKNMREIGLPPTVASLNVLIKALCRNDGTVDAGLKI 179
Query: 192 FLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSY--LI 249
FL + PD+ TY L+ G + + AKK F EMV + D P +Y LI
Sbjct: 180 FLEMPKRGCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMV-----EKDCAPTVVTYTSLI 234
Query: 250 TLLKGCDGIYETVNSLKRMMERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIG 308
L G + E + L+ M +G P + T+ L C G++L+ E ++ M+ R G
Sbjct: 235 NGLCGSKNVDEAMRYLEEMKSKGIEPNVFTYSSLMDGLCKDGRSLQAME-LFEMMMAR-G 292
Query: 309 FRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEAS 368
RP+ Y +I+ C + A++LLD M G PD Y + K EA+
Sbjct: 293 CRPNMVTYTTLITGLCKEQKIQEAVELLDRMNLQGLKPDAGLYGKVISGFCAISKFREAA 352
Query: 369 GLFNEMVKNENVLN------HENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGN 422
+EM+ N H V + ++ P A + M S ET
Sbjct: 353 NFLDEMILGGITPNRLTWNIHVKTSNEVVRGLCANYPSRAFTLYLSMRSRGISVEVETLE 412
Query: 423 LLVAGLCDMHMLPEAVKYAKGMAEKG 448
LV LC +AV+ + G
Sbjct: 413 SLVKCLCKKGEFQKAVQLVDEIVTDG 438
Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 79/356 (22%), Positives = 148/356 (41%), Gaps = 48/356 (13%)
Query: 26 FASHLDVPNLPPTIKTLCEIIANTPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAV 85
F ++ LPPT+ +L +VL K L R + TV+ LK P
Sbjct: 143 FYKNMREIGLPPTVASL-------------NVLIKALCR-NDGTVDAGLKIFLEMPKRGC 188
Query: 86 KFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIK----SMKKENVLSLATFASV 141
D S Y + ++ L C F + +A K ++K+ ++ T+ S+
Sbjct: 189 -----------DPDS-YTYGTLISGL---CRFGRIDEAKKLFTEMVEKDCAPTVVTYTSL 233
Query: 142 FSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-I 200
+ + V +A+ + M+ G + +VF +SL+ +C+DG+++ A + ++ R
Sbjct: 234 INGLCGSKNVDEAMRYLEEMKSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGC 293
Query: 201 KPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYE 260
+P+ TY L+ G KE+ + A + M ++ G PD +I+ E
Sbjct: 294 RPNMVTYTTLITGLCKEQKIQEAVELLDRMNLQ-GLKPD--AGLYGKVISGFCAISKFRE 350
Query: 261 TVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRG--------AEFIWGAMVGRIGFRPD 312
N L M+ G P + + + + + +RG A ++ +M R G +
Sbjct: 351 AANFLDEMILGGITPNRLTWNIHVKT--SNEVVRGLCANYPSRAFTLYLSMRSR-GISVE 407
Query: 313 THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEAS 368
++ C E A++L+DE+V +G P T+ +L + + EAS
Sbjct: 408 VETLESLVKCLCKKGEFQKAVQLVDEIVTDGCIPSKGTWKLLIGHTLDKTIVGEAS 463
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/243 (23%), Positives = 93/243 (38%), Gaps = 40/243 (16%)
Query: 239 DNVPAYDSYLITLLKGCDGIYETVNSLK---RMMERGCNPGMTFFKLAFEECLTGQNLRG 295
+N + L+++ +G ++ +SL+ +M + C+P + + L +N
Sbjct: 80 ENCVVSEDILLSICRGYGRVHRPFDSLRVFHKMKDFDCDPSQKAY-VTVLAILVEENQLN 138
Query: 296 AEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNET-GAAMKLLDEMVYNGAFPDIQTYNIL 354
F + + IG P N++I C ++ T A +K+ EM G PD TY L
Sbjct: 139 LAFKFYKNMREIGLPPTVASLNVLIKALCRNDGTVDAGLKIFLEMPKRGCDPDSYTYGTL 198
Query: 355 FEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHC 414
L + ++ EA LF EMV E C
Sbjct: 199 ISGLCRFGRIDEAKKLFTEMV-----------------------------------EKDC 223
Query: 415 SDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEE 474
+ T L+ GLC + EA++Y + M KGI+ F S L L K + E
Sbjct: 224 APTVVTYTSLINGLCGSKNVDEAMRYLEEMKSKGIEPNVFTYSSLMDGLCKDGRSLQAME 283
Query: 475 LLK 477
L +
Sbjct: 284 LFE 286
Score = 45.8 bits (107), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 63/144 (43%), Gaps = 2/144 (1%)
Query: 308 GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEA 367
G PD++ Y +IS C A KL EMV P + TY L L + + EA
Sbjct: 187 GCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGSKNVDEA 246
Query: 368 SGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYV-AIKFWKYMIENHCSDLSETGNLLVA 426
EM K++ + + +++ + D + A++ ++ M+ C T L+
Sbjct: 247 MRYLEEM-KSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLIT 305
Query: 427 GLCDMHMLPEAVKYAKGMAEKGIQ 450
GLC + EAV+ M +G++
Sbjct: 306 GLCKEQKIQEAVELLDRMNLQGLK 329
>sp|Q9LQ15|PPR95_ARATH Pentatricopeptide repeat-containing protein At1g62914,
mitochondrial OS=Arabidopsis thaliana GN=At1g62914 PE=2
SV=1
Length = 528
Score = 87.8 bits (216), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 75/304 (24%), Positives = 136/304 (44%), Gaps = 5/304 (1%)
Query: 136 ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRV 195
TF ++ + ++ +A+ D M Q GC+ D+ ++++ +C+ G T A L
Sbjct: 184 VTFTTLIHGLFLHNKASEAVALIDRMVQRGCQPDLVTYGAVVNGLCKRGDTDLALNLLNK 243
Query: 196 VDG-RIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG 254
++ +I+ + Y+ +++ K R +A F EM + G P NV Y S LI+ L
Sbjct: 244 MEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENK-GVRP-NVITYSS-LISCLCN 300
Query: 255 CDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTH 314
+ L M+ER NP + F + + L AE ++ M+ R P+
Sbjct: 301 YGRWSDASRLLSDMIERKINPNLVTFSALIDAFVKKGKLVKAEKLYEEMIKR-SIDPNIF 359
Query: 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
Y+ +I+ +C + G A ++L+ M+ P++ TYN L K +++ + LF EM
Sbjct: 360 TYSSLINGFCMLDRLGEAKQMLELMIRKDCLPNVVTYNTLINGFCKAKRVDKGMELFREM 419
Query: 375 VKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHML 434
+ V N + + + D A +K M+ T N+L+ GLC L
Sbjct: 420 SQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKL 479
Query: 435 PEAV 438
+A+
Sbjct: 480 AKAM 483
Score = 79.0 bits (193), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 73/305 (23%), Positives = 131/305 (42%), Gaps = 40/305 (13%)
Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASVFSSYVVADRVKDAITTFDVM 161
+ VV+ L K D + + M+ + ++ +++V S DA+ F M
Sbjct: 220 TYGAVVNGLCKRGDTDLALNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEM 279
Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYAILLEGWEKERDV 220
E G + +V +SL+S +C G+ DA + L +++ +I P+ T++ L++ + K+ +
Sbjct: 280 ENKGVRPNVITYSSLISCLCNYGRWSDASRLLSDMIERKINPNLVTFSALIDAFVKKGKL 339
Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNP----- 275
A+K + EM I+ DP N+ Y S LI D + E L+ M+ + C P
Sbjct: 340 VKAEKLYEEM-IKRSIDP-NIFTYSS-LINGFCMLDRLGEAKQMLELMIRKDCLPNVVTY 396
Query: 276 ---------------GMTFFKLAFEECLTGQNLRGAEFIWGAMVGR-------------- 306
GM F+ + L G + I G R
Sbjct: 397 NTLINGFCKAKRVDKGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVS 456
Query: 307 IGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWE 366
+G P+ YN+++ C + + AM + + + + PDI TYNI+ E + K K W+
Sbjct: 457 VGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGK-WK 515
Query: 367 ASGLF 371
G++
Sbjct: 516 MGGIY 520
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 75/319 (23%), Positives = 136/319 (42%), Gaps = 13/319 (4%)
Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
S+ F+ + S+ ++ I+ + ME G H+++ N L++ CR + A L
Sbjct: 77 SIIEFSKLLSAIAKMNKFDLVISFGEKMEILGISHNLYTYNILINCFCRCSRLSLALALL 136
Query: 194 -RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
+++ +PD T LL G+ +++A +MV E+G+ PD V TL+
Sbjct: 137 GKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVALVDQMV-EMGYKPDTVT-----FTTLI 190
Query: 253 KGC---DGIYETVNSLKRMMERGCNPGM-TFFKLAFEECLTGQNLRGAEFIWGAMVGRIG 308
G + E V + RM++RGC P + T+ + C G + +I
Sbjct: 191 HGLFLHNKASEAVALIDRMVQRGCQPDLVTYGAVVNGLCKRGDTDLALNLLNKMEAAKI- 249
Query: 309 FRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEAS 368
+ +Y+ +I C A+ L EM G P++ TY+ L L + +AS
Sbjct: 250 -EANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYGRWSDAS 308
Query: 369 GLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGL 428
L ++M++ + N A + ++ A K ++ MI+ T + L+ G
Sbjct: 309 RLLSDMIERKINPNLVTFSALIDAFVKKGKLVKAEKLYEEMIKRSIDPNIFTYSSLINGF 368
Query: 429 CDMHMLPEAVKYAKGMAEK 447
C + L EA + + M K
Sbjct: 369 CMLDRLGEAKQMLELMIRK 387
Score = 63.5 bits (153), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 83/388 (21%), Positives = 142/388 (36%), Gaps = 79/388 (20%)
Query: 153 DAITTFDVMEQ-----------------------------------YGCKHDVFALNSLL 177
DAI F VM Q G H+++ N L+
Sbjct: 61 DAIGLFGVMAQSRPFPSIIEFSKLLSAIAKMNKFDLVISFGEKMEILGISHNLYTYNILI 120
Query: 178 SAICRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGW 236
+ CR + A L +++ +PD T LL G+ +++A +MV E+G+
Sbjct: 121 NCFCRCSRLSLALALLGKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVALVDQMV-EMGY 179
Query: 237 DPDNVPAYDSYLITLLKGC---DGIYETVNSLKRMMERGCNP---------------GMT 278
PD V TL+ G + E V + RM++RGC P G T
Sbjct: 180 KPDTVT-----FTTLIHGLFLHNKASEAVALIDRMVQRGCQPDLVTYGAVVNGLCKRGDT 234
Query: 279 FFKLAFEECLTGQNLRGAEFIWGAMVGRI-------------------GFRPDTHMYNMM 319
L + + I+ ++ + G RP+ Y+ +
Sbjct: 235 DLALNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSL 294
Query: 320 ISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNEN 379
IS C A +LL +M+ P++ T++ L + VK KL +A L+ EM+K
Sbjct: 295 ISCLCNYGRWSDASRLLSDMIERKINPNLVTFSALIDAFVKKGKLVKAEKLYEEMIKRSI 354
Query: 380 VLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVK 439
N + + + D A + + MI C T N L+ G C + + ++
Sbjct: 355 DPNIFTYSSLINGFCMLDRLGEAKQMLELMIRKDCLPNVVTYNTLINGFCKAKRVDKGME 414
Query: 440 YAKGMAEKGIQVTPFALSKLKQILIKAR 467
+ M+++G+ + L +AR
Sbjct: 415 LFREMSQRGLVGNTVTYTTLIHGFFQAR 442
Score = 36.2 bits (82), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 67/170 (39%)
Query: 300 WGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLV 359
+G + +G + + YN++I+ +C + A+ LL +M+ G PDI T N L
Sbjct: 100 FGEKMEILGISHNLYTYNILINCFCRCSRLSLALALLGKMMKLGYEPDIVTLNSLLNGFC 159
Query: 360 KGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSE 419
G ++ +A L ++MV+ + + + A+ M++ C
Sbjct: 160 HGNRISDAVALVDQMVEMGYKPDTVTFTTLIHGLFLHNKASEAVALIDRMVQRGCQPDLV 219
Query: 420 TGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKE 469
T +V GLC A+ M I+ S + L K R E
Sbjct: 220 TYGAVVNGLCKRGDTDLALNLLNKMEAAKIEANVVIYSTVIDSLCKYRHE 269
>sp|Q9SH26|PP102_ARATH Pentatricopeptide repeat-containing protein At1g63400
OS=Arabidopsis thaliana GN=At1g63400 PE=2 SV=1
Length = 577
Score = 87.4 bits (215), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 78/333 (23%), Positives = 147/333 (44%), Gaps = 5/333 (1%)
Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
TF ++ + ++ +A+ D M Q GC+ ++ +++ +C+ G A+ L +
Sbjct: 192 TFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKM 251
Query: 197 DG-RIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
+ +I+ + Y+ +++ K R +A F EM + G P NV Y S LI+ L
Sbjct: 252 EAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENK-GVRP-NVITYSS-LISCLCNY 308
Query: 256 DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHM 315
+ + L M+ER NP + F + + L AE ++ M+ R PD
Sbjct: 309 ERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKR-SIDPDIFT 367
Query: 316 YNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
Y+ +I+ +C + A + + M+ FP++ TYN L K +++ E LF EM
Sbjct: 368 YSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMS 427
Query: 376 KNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLP 435
+ V N + + + D A +K M+ + T N L+ GLC L
Sbjct: 428 QRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLE 487
Query: 436 EAVKYAKGMAEKGIQVTPFALSKLKQILIKARK 468
+A+ + + ++ T + + + + + KA K
Sbjct: 488 KAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGK 520
Score = 75.5 bits (184), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 70/297 (23%), Positives = 135/297 (45%), Gaps = 14/297 (4%)
Query: 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASVFSSYVVADRVKDAITTFDVM 161
+ +VV+ L K D ++ + M+ + ++ +++V S DA+ F M
Sbjct: 227 TYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEM 286
Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYAILLEGWEKERDV 220
E G + +V +SL+S +C + DA + L +++ +I P+ T+ L++ + KE +
Sbjct: 287 ENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKL 346
Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFF 280
A+K + EM I+ DPD + Y S LI D + E + + M+ + C P + +
Sbjct: 347 VEAEKLYDEM-IKRSIDPD-IFTYSS-LINGFCMHDRLDEAKHMFELMISKDCFPNVVTY 403
Query: 281 KLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMV 340
+ + ++ M R G +T Y +I + + + A + +MV
Sbjct: 404 NTLINGFCKAKRIDEGVELFREMSQR-GLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMV 462
Query: 341 YNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNE--------NVLNHENCRAA 389
+G P+I TYN L + L K KL +A +F + +++ N++ C+A
Sbjct: 463 SDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAG 519
Score = 69.7 bits (169), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 85/391 (21%), Positives = 146/391 (37%), Gaps = 79/391 (20%)
Query: 150 RVKDAITTFDVMEQYGCKHDVFALNSLLSAI----------------------------- 180
++ DAI F M + +F N LLSAI
Sbjct: 65 KLDDAIGLFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYN 124
Query: 181 ------CRDGKTIDAWQFL-RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIE 233
CR + A L +++ +P T + LL G+ + +++A +MV E
Sbjct: 125 ILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMV-E 183
Query: 234 VGWDPDNVPAYDSYLITLLKGC---DGIYETVNSLKRMMERGCNPGMTFF---------- 280
+G+ PD + TL+ G + E V + RM++RGC P + +
Sbjct: 184 MGYRPDTIT-----FTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKR 238
Query: 281 ---KLAFE--ECLTGQNLRGAEFIWGAMVGRI-------------------GFRPDTHMY 316
LAF + + I+ ++ + G RP+ Y
Sbjct: 239 GDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITY 298
Query: 317 NMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK 376
+ +IS C A +LL +M+ P++ T+N L + VK KL EA L++EM+K
Sbjct: 299 SSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIK 358
Query: 377 NENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPE 436
+ + + + D A ++ MI C T N L+ G C + E
Sbjct: 359 RSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDE 418
Query: 437 AVKYAKGMAEKGIQVTPFALSKLKQILIKAR 467
V+ + M+++G+ + L +AR
Sbjct: 419 GVELFREMSQRGLVGNTVTYTTLIHGFFQAR 449
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 101/217 (46%), Gaps = 9/217 (4%)
Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
T++S+ + + + DR+ +A F++M C +V N+L++ C+ + + + R +
Sbjct: 367 TYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREM 426
Query: 197 DGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255
R + + TY L+ G+ + RD NA+ F +MV + G P N+ Y++ L L K
Sbjct: 427 SQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSD-GVHP-NIMTYNTLLDGLCK-- 482
Query: 256 DGIYETVNSLKRMMERG-CNPGMTFFKLAFEE-CLTGQNLRGAEFIWGAMVGRIGFRPDT 313
+G E + ++R P + + + E C G+ G + + G +PD
Sbjct: 483 NGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLK--GVKPDV 540
Query: 314 HMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQT 350
+YN MIS +C A L +M +G PD T
Sbjct: 541 IIYNTMISGFCRKGLKEEADALFRKMREDGPLPDSGT 577
Score = 45.8 bits (107), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/169 (21%), Positives = 69/169 (40%)
Query: 301 GAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVK 360
G + R+G + + YN++I+ +C ++ A+ LL +M+ G P I T + L
Sbjct: 108 GEKMQRLGISHNLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCH 167
Query: 361 GRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSET 420
G+++ +A L ++MV+ + + + A+ M++ C T
Sbjct: 168 GKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVT 227
Query: 421 GNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKE 469
++V GLC + A M I+ S + L K R E
Sbjct: 228 YGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHE 276
>sp|Q9FMF6|PP444_ARATH Pentatricopeptide repeat-containing protein At5g64320,
mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2
SV=1
Length = 730
Score = 87.0 bits (214), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 81/334 (24%), Positives = 146/334 (43%), Gaps = 6/334 (1%)
Query: 135 LATFASVFSSYVVADRVKDAITTF-DVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
+ F ++ +V R+ DA D++ YG DV NSL+ ++G A + L
Sbjct: 353 IVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVL 412
Query: 194 RVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
+ + KP+ +Y IL++G+ K + A EM + G P+ V + LI+
Sbjct: 413 HDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSAD-GLKPNTVGF--NCLISAF 469
Query: 253 KGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD 312
I E V + M +GC P + F ++ A ++ M+ G +
Sbjct: 470 CKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISE-GVVAN 528
Query: 313 THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFN 372
T YN +I+ + E A KL++EMV+ G+ D TYN L + L + ++ +A LF
Sbjct: 529 TVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFE 588
Query: 373 EMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMH 432
+M+++ + ++ +C + S A++F K M+ + T N L+ GLC
Sbjct: 589 KMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAG 648
Query: 433 MLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKA 466
+ + + + + +GI + L L K
Sbjct: 649 RIEDGLTMFRKLQAEGIPPDTVTFNTLMSWLCKG 682
Score = 85.5 bits (210), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 72/291 (24%), Positives = 132/291 (45%), Gaps = 10/291 (3%)
Query: 98 KHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAIT 156
K + Y++ ++VD K D ++ + M + + + F + S++ R+ +A+
Sbjct: 421 KPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVE 480
Query: 157 TFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYAILLEGWE 215
F M + GCK DV+ NSL+S +C + A LR ++ + + TY L+ +
Sbjct: 481 IFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFL 540
Query: 216 KERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSL-KRMMERGCN 274
+ ++ A+K EMV + P + Y+S + L + G + SL ++M+ G
Sbjct: 541 RRGEIKEARKLVNEMVFQ--GSPLDEITYNSLIKGLCRA--GEVDKARSLFEKMLRDGHA 596
Query: 275 PGMTFFKLAFEE-CLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAM 333
P + C +G EF MV R G PD +N +I+ C + +
Sbjct: 597 PSNISCNILINGLCRSGMVEEAVEF-QKEMVLR-GSTPDIVTFNSLINGLCRAGRIEDGL 654
Query: 334 KLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHE 384
+ ++ G PD T+N L +L KG +++A L +E +++ V NH
Sbjct: 655 TMFRKLQAEGIPPDTVTFNTLMSWLCKGGFVYDACLLLDEGIEDGFVPNHR 705
Score = 84.7 bits (208), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 80/350 (22%), Positives = 152/350 (43%), Gaps = 11/350 (3%)
Query: 103 AWNLVVDLL-GKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVM 161
++N+V+++L NC A + ++ +L TF V ++ + + A++ M
Sbjct: 184 SYNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKAFCAVNEIDSALSLLRDM 243
Query: 162 EQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR--VVDGRIKPDNDTYAILLEGWEKERD 219
++GC + +L+ ++ + + +A Q L + G + PD +T+ ++ G K
Sbjct: 244 TKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCV-PDAETFNDVILGLCKFDR 302
Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTF 279
+ A K M+I G+ PD++ Y + L K V++ K + R P +
Sbjct: 303 INEAAKMVNRMLIR-GFAPDDI-TYGYLMNGLCK-----IGRVDAAKDLFYRIPKPEIVI 355
Query: 280 FKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEM 339
F +T L A+ + MV G PD YN +I Y G A+++L +M
Sbjct: 356 FNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDM 415
Query: 340 VYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDP 399
G P++ +Y IL + K K+ EA + NEM + N + +
Sbjct: 416 RNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRI 475
Query: 400 YVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449
A++ ++ M C T N L++GLC++ + A+ + M +G+
Sbjct: 476 PEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGV 525
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 88/348 (25%), Positives = 143/348 (41%), Gaps = 43/348 (12%)
Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ--FLR 194
TF V DR+ +A + M G D L++ +C+ G+ +DA + F R
Sbjct: 289 TFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGR-VDAAKDLFYR 347
Query: 195 VVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSY------- 247
+ KP+ + L+ G+ + +AK +MV G PD V Y+S
Sbjct: 348 IP----KPEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPD-VCTYNSLIYGYWKE 402
Query: 248 -LITLL---------KGC-----------DG------IYETVNSLKRMMERGCNPGMTFF 280
L+ L KGC DG I E N L M G P F
Sbjct: 403 GLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGF 462
Query: 281 KLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMV 340
+ A I+ M R G +PD + +N +IS C +E A+ LL +M+
Sbjct: 463 NCLISAFCKEHRIPEAVEIFREM-PRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMI 521
Query: 341 YNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPY 400
G + TYN L ++ ++ EA L NEMV + L+ + ++ + +
Sbjct: 522 SEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVD 581
Query: 401 VAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448
A ++ M+ + + + + N+L+ GLC M+ EAV++ K M +G
Sbjct: 582 KARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRG 629
Score = 42.0 bits (97), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 48/216 (22%), Positives = 88/216 (40%), Gaps = 8/216 (3%)
Query: 163 QYGCKHDVFALNSLLSAICRDG--KTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDV 220
Q G +H L+ + +G KTID +++ D I + ++ ++K
Sbjct: 104 QNGYRHSFDVYQVLIGKLGANGEFKTIDRL-LIQMKDEGIVFKESLFISIMRDYDKAGFP 162
Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG-CDGIYETVNSLKRMMERGCNPGMTF 279
+ EM +P +Y+ L L+ G C + N M+ R P +
Sbjct: 163 GQTTRLMLEMRNVYSCEP-TFKSYNVVLEILVSGNCHKV--AANVFYDMLSRKIPPTLFT 219
Query: 280 FKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEM 339
F + + + A + M + G P++ +Y +I N A++LL+EM
Sbjct: 220 FGVVMKAFCAVNEIDSALSLLRDMT-KHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEM 278
Query: 340 VYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375
G PD +T+N + L K ++ EA+ + N M+
Sbjct: 279 FLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRML 314
>sp|O81908|PPR2_ARATH Pentatricopeptide repeat-containing protein At1g02060,
chloroplastic OS=Arabidopsis thaliana GN=At1g02060 PE=2
SV=2
Length = 710
Score = 86.3 bits (212), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 89/373 (23%), Positives = 152/373 (40%), Gaps = 49/373 (13%)
Query: 65 VSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAI 124
+S+ TV Q L+ P ++FF W + + H ++ L+++ LG+ + + +
Sbjct: 66 ISRTTVLQTLRL-IKVPADGLRFFDWVSNK-GFSHKEQSFFLMLEFLGRARNLNVARNFL 123
Query: 125 KSMKKEN----VLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAI 180
S+++ + L F S+ SY A ++++ F M+Q G V NSLLS +
Sbjct: 124 FSIERRSNGCVKLQDRYFNSLIRSYGNAGLFQESVKLFQTMKQMGISPSVLTFNSLLSIL 183
Query: 181 CRDGKT---IDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWD 237
+ G+T D + +R G + PD+ T+ L+ G+ K V A + F +M + +
Sbjct: 184 LKRGRTGMAHDLFDEMRRTYG-VTPDSYTFNTLINGFCKNSMVDEAFRIFKDMEL-YHCN 241
Query: 238 PDNV---------------------------------PAYDSYLITLLKG-C--DGIYET 261
PD V P SY TL++G C I E
Sbjct: 242 PDVVTYNTIIDGLCRAGKVKIAHNVLSGMLKKATDVHPNVVSY-TTLVRGYCMKQEIDEA 300
Query: 262 VNSLKRMMERGCNPGMTFFKLAFEECLTGQNL-RGAEFIWGAMVGRIGFRPDTHMYNMMI 320
V M+ RG P + + + + G F PD +N++I
Sbjct: 301 VLVFHDMLSRGLKPNAVTYNTLIKGLSEAHRYDEIKDILIGGNDAFTTFAPDACTFNILI 360
Query: 321 SLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENV 380
+C + AAMK+ EM+ PD +Y++L L + A LFNE+ + E +
Sbjct: 361 KAHCDAGHLDAAMKVFQEMLNMKLHPDSASYSVLIRTLCMRNEFDRAETLFNELFEKEVL 420
Query: 381 LNHENCRAAVRVY 393
L + C+ Y
Sbjct: 421 LGKDECKPLAAAY 433
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 76/324 (23%), Positives = 138/324 (42%), Gaps = 36/324 (11%)
Query: 77 SYSHPG---PAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL 133
SY + G +VK F+ + Q+ S +N ++ +L K D M++ +
Sbjct: 147 SYGNAGLFQESVKLFQ-TMKQMGISPSVLTFNSLLSILLKRGRTGMAHDLFDEMRRTYGV 205
Query: 134 S--LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ 191
+ TF ++ + + V +A F ME Y C DV N+++ +CR GK A
Sbjct: 206 TPDSYTFNTLINGFCKNSMVDEAFRIFKDMELYHCNPDVVTYNTIIDGLCRAGKVKIAHN 265
Query: 192 FLRVVDGRIKPDND------TYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYD 245
V+ G +K D +Y L+ G+ ++++ A F +M + G P+ V Y+
Sbjct: 266 ---VLSGMLKKATDVHPNVVSYTTLVRGYCMKQEIDEAVLVFHDM-LSRGLKPNAV-TYN 320
Query: 246 SYLITLLKGCDGIYETVNSLKRMMERGCNPGMTF------FKLAFEECLTGQNLRGAEFI 299
TL+KG + + +K ++ G + TF F + + +L A +
Sbjct: 321 ----TLIKGLSEAHR-YDEIKDILIGGNDAFTTFAPDACTFNILIKAHCDAGHLDAAMKV 375
Query: 300 WGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAF-------PDIQTYN 352
+ M+ + PD+ Y+++I C NE A L +E+ P YN
Sbjct: 376 FQEMLN-MKLHPDSASYSVLIRTLCMRNEFDRAETLFNELFEKEVLLGKDECKPLAAAYN 434
Query: 353 ILFEFLVKGRKLWEASGLFNEMVK 376
+FE+L K +A +F +++K
Sbjct: 435 PMFEYLCANGKTKQAEKVFRQLMK 458
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 61/293 (20%), Positives = 113/293 (38%), Gaps = 31/293 (10%)
Query: 109 DLLGKNCLFDAMWDAIKSMKKENVLS------------LATFASVFSSYVVADRVKDAIT 156
D++ N + D + A K NVLS + ++ ++ Y + + +A+
Sbjct: 243 DVVTYNTIIDGLCRAGKVKIAHNVLSGMLKKATDVHPNVVSYTTLVRGYCMKQEIDEAVL 302
Query: 157 TFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-----IKPDNDTYAILL 211
F M G K + N+L+ + + + L + G PD T+ IL+
Sbjct: 303 VFHDMLSRGLKPNAVTYNTLIKGLSEAHRYDEIKDIL--IGGNDAFTTFAPDACTFNILI 360
Query: 212 EGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMER 271
+ + A K F EM + + PD+ A S LI L + + E+
Sbjct: 361 KAHCDAGHLDAAMKVFQEM-LNMKLHPDS--ASYSVLIRTLCMRNEFDRAETLFNELFEK 417
Query: 272 G-------CNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYC 324
C P + FE + AE ++ ++ R P + Y +I+ +C
Sbjct: 418 EVLLGKDECKPLAAAYNPMFEYLCANGKTKQAEKVFRQLMKRGVQDPPS--YKTLITGHC 475
Query: 325 YSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKN 377
+ A +LL M+ PD++TY +L + L+K + A M+++
Sbjct: 476 REGKFKPAYELLVLMLRREFVPDLETYELLIDGLLKIGEALLAHDTLQRMLRS 528
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 54/239 (22%), Positives = 96/239 (40%), Gaps = 41/239 (17%)
Query: 241 VPAYDSYLITLLK--GCDGIY-ETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAE 297
V D Y +L++ G G++ E+V + M + G +P + F L A
Sbjct: 134 VKLQDRYFNSLIRSYGNAGLFQESVKLFQTMKQMGISPSVLTFNSLLSILLKRGRTGMAH 193
Query: 298 FIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEF 357
++ M G PD++ +N +I+ +C ++ A ++ +M PD+ TYN + +
Sbjct: 194 DLFDEMRRTYGVTPDSYTFNTLINGFCKNSMVDEAFRIFKDMELYHCNPDVVTYNTIIDG 253
Query: 358 LVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDL 417
L + K+ A + + M+K + H + +
Sbjct: 254 LCRAGKVKIAHNVLSGMLKKAT-------------------------------DVHPNVV 282
Query: 418 SETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEA-VYEEL 475
S T LV G C + EAV M +G++ P A++ LIK EA Y+E+
Sbjct: 283 SYTT--LVRGYCMKQEIDEAVLVFHDMLSRGLK--PNAVT--YNTLIKGLSEAHRYDEI 335
>sp|Q9FMD3|PP389_ARATH Pentatricopeptide repeat-containing protein At5g16640,
mitochondrial OS=Arabidopsis thaliana GN=At5g16640 PE=2
SV=1
Length = 504
Score = 86.3 bits (212), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 89/369 (24%), Positives = 155/369 (42%), Gaps = 19/369 (5%)
Query: 117 FDAMWDAIKSMKKENVL--------------SLATFASVFSSYVVADRVKDAITTFDVME 162
F + AI MKK +V+ +L T + + + ++ A++ M
Sbjct: 84 FSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNILLNCFCRCSQLSLALSFLGKMI 143
Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDA-WQFLRVVDGRIKPDNDTYAILLEGWEKERDVA 221
+ G + + SLL+ CR + DA + F ++V KP+ Y +++G K + V
Sbjct: 144 KLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMGYKPNVVIYNTIIDGLCKSKQVD 203
Query: 222 NAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFK 281
NA M + G PD V Y+S LI+ L + + M +R P + F
Sbjct: 204 NALDLLNRMEKD-GIGPD-VVTYNS-LISGLCSSGRWSDATRMVSCMTKREIYPDVFTFN 260
Query: 282 LAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVY 341
+ C+ + AE + M+ R PD Y+++I C + A ++ MV
Sbjct: 261 ALIDACVKEGRVSEAEEFYEEMIRR-SLDPDIVTYSLLIYGLCMYSRLDEAEEMFGFMVS 319
Query: 342 NGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYV 401
G FPD+ TY+IL K +K+ LF EM + V N ++ Y + V
Sbjct: 320 KGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAGKLNV 379
Query: 402 AIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQ 461
A + ++ M+ T N+L+ GLCD + +A+ M + G+ + + +
Sbjct: 380 AEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKIEKALVILADMQKNGMDADIVTYNIIIR 439
Query: 462 ILIKARKEA 470
+ KA + A
Sbjct: 440 GMCKAGEVA 448
Score = 75.5 bits (184), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 69/266 (25%), Positives = 120/266 (45%), Gaps = 6/266 (2%)
Query: 104 WNLVVDLLGKNCLFDAMWDAIKSMKKENVL-SLATFASVFSSYVVADRVKDAITTFDVME 162
+N ++D L K+ D D + M+K+ + + T+ S+ S + R DA M
Sbjct: 189 YNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMT 248
Query: 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-VVDGRIKPDNDTYAILLEGWEKERDVA 221
+ DVF N+L+ A ++G+ +A +F ++ + PD TY++L+ G +
Sbjct: 249 KREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYSRLD 308
Query: 222 NAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFK 281
A++ FG MV + G PD V S LI + + M +RG +
Sbjct: 309 EAEEMFGFMVSK-GCFPDVVTY--SILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYT 365
Query: 282 LAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVY 341
+ + L AE I+ MV G P+ YN+++ C + + A+ +L +M
Sbjct: 366 ILIQGYCRAGKLNVAEEIFRRMV-FCGVHPNIITYNVLLHGLCDNGKIEKALVILADMQK 424
Query: 342 NGAFPDIQTYNILFEFLVKGRKLWEA 367
NG DI TYNI+ + K ++ +A
Sbjct: 425 NGMDADIVTYNIIIRGMCKAGEVADA 450
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 81/356 (22%), Positives = 149/356 (41%), Gaps = 49/356 (13%)
Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193
S+A F+ + S+ + I ++ M+ G H++ N LL+ CR + A FL
Sbjct: 80 SIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNILLNCFCRCSQLSLALSFL 139
Query: 194 -RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252
+++ +P T+ LL G+ + V +A F +MV +G+ P NV Y++ + L
Sbjct: 140 GKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMV-GMGYKP-NVVIYNTIIDGLC 197
Query: 253 KGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD 312
K + ++ L RM + G IG PD
Sbjct: 198 KS-KQVDNALDLLNRMEKDG----------------------------------IG--PD 220
Query: 313 THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFN 372
YN +IS C S A +++ M +PD+ T+N L + VK ++ EA +
Sbjct: 221 VVTYNSLISGLCSSGRWSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYE 280
Query: 373 EMVKNE---NVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLC 429
EM++ +++ + + +Y D+ A + + +M+ C T ++L+ G C
Sbjct: 281 EMIRRSLDPDIVTYSLLIYGLCMYSRLDE---AEEMFGFMVSKGCFPDVVTYSILINGYC 337
Query: 430 DMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKK---CKAH 482
+ +K M+++G+ + L Q +A K V EE+ ++ C H
Sbjct: 338 KSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVH 393
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 183,345,967
Number of Sequences: 539616
Number of extensions: 7685336
Number of successful extensions: 22525
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 104
Number of HSP's that attempted gapping in prelim test: 18936
Number of HSP's gapped (non-prelim): 1518
length of query: 482
length of database: 191,569,459
effective HSP length: 121
effective length of query: 361
effective length of database: 126,275,923
effective search space: 45585608203
effective search space used: 45585608203
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)