Query 038748
Match_columns 482
No_of_seqs 604 out of 3204
Neff 11.5
Searched_HMMs 46136
Date Fri Mar 29 02:54:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038748.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038748hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 2.3E-63 4.9E-68 498.7 53.9 397 78-481 383-782 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 1.3E-62 2.8E-67 493.3 56.3 420 54-481 392-840 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 1.1E-59 2.4E-64 469.6 46.8 406 54-478 109-519 (697)
4 PLN03081 pentatricopeptide (PP 100.0 1.3E-58 2.8E-63 462.0 44.9 408 54-482 145-557 (697)
5 PLN03077 Protein ECB2; Provisi 100.0 1.4E-58 3.1E-63 472.5 46.2 397 68-480 122-616 (857)
6 PLN03077 Protein ECB2; Provisi 100.0 4.6E-58 9.9E-63 468.8 46.4 414 54-480 174-652 (857)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1.8E-26 4E-31 241.4 52.8 390 76-481 510-899 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 4.4E-25 9.5E-30 231.0 52.0 388 78-481 478-865 (899)
9 PRK11788 tetratricopeptide rep 99.9 1.8E-21 3.9E-26 183.0 35.3 302 109-418 43-353 (389)
10 PRK11788 tetratricopeptide rep 99.9 1.7E-21 3.6E-26 183.2 34.0 317 56-384 26-354 (389)
11 PRK11447 cellulose synthase su 99.9 8.5E-19 1.8E-23 184.7 48.8 388 76-480 280-738 (1157)
12 PRK15174 Vi polysaccharide exp 99.9 5.2E-19 1.1E-23 174.4 43.8 325 76-412 53-381 (656)
13 TIGR00990 3a0801s09 mitochondr 99.9 2.6E-18 5.6E-23 170.1 47.6 394 76-480 138-569 (615)
14 PRK11447 cellulose synthase su 99.9 5.6E-18 1.2E-22 178.5 49.7 356 110-481 278-699 (1157)
15 PRK15174 Vi polysaccharide exp 99.9 1.8E-18 3.8E-23 170.7 41.6 368 78-457 18-391 (656)
16 PRK10049 pgaA outer membrane p 99.9 1E-17 2.2E-22 168.8 47.1 409 62-481 10-455 (765)
17 KOG4626 O-linked N-acetylgluco 99.9 2.6E-19 5.7E-24 161.6 30.0 328 102-446 117-484 (966)
18 KOG4626 O-linked N-acetylgluco 99.9 1.5E-18 3.2E-23 156.9 33.2 336 77-429 128-501 (966)
19 PRK14574 hmsH outer membrane p 99.8 5E-16 1.1E-20 153.9 47.7 403 67-481 36-512 (822)
20 PRK10049 pgaA outer membrane p 99.8 1.6E-16 3.6E-21 160.1 45.1 375 96-481 10-421 (765)
21 TIGR00990 3a0801s09 mitochondr 99.8 2.2E-15 4.9E-20 149.2 46.4 368 104-480 130-535 (615)
22 KOG4422 Uncharacterized conser 99.8 1.7E-14 3.7E-19 125.3 43.1 401 41-449 121-592 (625)
23 PRK14574 hmsH outer membrane p 99.8 1.3E-13 2.7E-18 137.0 48.1 365 76-448 79-514 (822)
24 KOG2002 TPR-containing nuclear 99.8 1.6E-14 3.5E-19 137.7 38.0 392 80-480 251-743 (1018)
25 KOG4422 Uncharacterized conser 99.8 1.4E-13 2.9E-18 119.8 39.5 402 69-480 118-588 (625)
26 PRK09782 bacteriophage N4 rece 99.8 4.5E-13 9.7E-18 135.9 50.0 230 240-481 476-705 (987)
27 PRK09782 bacteriophage N4 rece 99.7 5.8E-13 1.2E-17 135.1 46.8 154 321-480 517-670 (987)
28 KOG2076 RNA polymerase III tra 99.7 1.9E-12 4E-17 123.0 39.3 360 114-480 152-553 (895)
29 PRK10747 putative protoheme IX 99.7 8.4E-13 1.8E-17 123.1 35.9 284 148-446 97-389 (398)
30 PRK10747 putative protoheme IX 99.7 5.4E-13 1.2E-17 124.4 33.2 286 114-411 97-389 (398)
31 KOG2002 TPR-containing nuclear 99.7 3.4E-12 7.4E-17 122.2 36.8 383 70-460 310-758 (1018)
32 KOG2076 RNA polymerase III tra 99.7 8.2E-12 1.8E-16 118.8 39.0 361 76-444 150-552 (895)
33 PF13429 TPR_15: Tetratricopep 99.6 2.1E-15 4.7E-20 134.3 13.6 261 209-480 13-275 (280)
34 TIGR00540 hemY_coli hemY prote 99.6 2.9E-12 6.4E-17 120.2 34.4 298 138-445 85-397 (409)
35 TIGR00540 hemY_coli hemY prote 99.6 2.3E-12 5.1E-17 120.8 33.2 300 103-411 84-398 (409)
36 PF13429 TPR_15: Tetratricopep 99.6 2.6E-15 5.7E-20 133.8 11.9 253 77-339 20-274 (280)
37 KOG2003 TPR repeat-containing 99.6 1.9E-12 4.1E-17 113.7 27.1 376 81-468 253-709 (840)
38 COG3071 HemY Uncharacterized e 99.6 3.6E-11 7.9E-16 104.3 34.3 290 148-451 97-394 (400)
39 KOG1155 Anaphase-promoting com 99.6 7.5E-11 1.6E-15 104.1 35.9 361 98-476 161-530 (559)
40 COG2956 Predicted N-acetylgluc 99.6 1.2E-11 2.6E-16 104.1 28.8 286 114-445 48-345 (389)
41 KOG1915 Cell cycle control pro 99.6 2.3E-10 5E-15 101.3 37.4 394 76-481 84-535 (677)
42 KOG0495 HAT repeat protein [RN 99.6 2.6E-09 5.7E-14 98.5 43.8 385 81-481 422-879 (913)
43 KOG1915 Cell cycle control pro 99.6 6E-10 1.3E-14 98.8 38.3 356 78-448 154-537 (677)
44 KOG1126 DNA-binding cell divis 99.6 3.1E-12 6.8E-17 117.8 24.7 287 150-453 334-626 (638)
45 KOG0495 HAT repeat protein [RN 99.5 9.2E-10 2E-14 101.4 39.7 335 102-448 517-881 (913)
46 KOG1126 DNA-binding cell divis 99.5 3.8E-12 8.2E-17 117.3 24.3 288 115-416 333-624 (638)
47 COG2956 Predicted N-acetylgluc 99.5 9.5E-11 2.1E-15 98.8 30.4 304 63-378 33-348 (389)
48 COG3071 HemY Uncharacterized e 99.5 5.6E-10 1.2E-14 97.1 35.8 300 105-416 86-394 (400)
49 KOG4318 Bicoid mRNA stability 99.5 7.2E-12 1.6E-16 118.7 24.0 242 95-363 19-286 (1088)
50 KOG1155 Anaphase-promoting com 99.5 3.3E-09 7.2E-14 94.0 38.1 347 77-445 176-534 (559)
51 KOG2003 TPR repeat-containing 99.5 7E-11 1.5E-15 104.0 27.1 363 108-481 244-688 (840)
52 PRK12370 invasion protein regu 99.5 1.8E-10 3.9E-15 112.4 30.9 269 130-413 251-536 (553)
53 KOG0547 Translocase of outer m 99.5 2.8E-09 6E-14 95.1 33.8 386 77-479 127-563 (606)
54 KOG4318 Bicoid mRNA stability 99.4 1.1E-11 2.5E-16 117.4 19.6 273 122-433 11-286 (1088)
55 KOG1156 N-terminal acetyltrans 99.4 1.4E-08 3.1E-13 93.8 38.2 408 54-479 30-465 (700)
56 TIGR02521 type_IV_pilW type IV 99.4 3E-10 6.4E-15 98.7 25.4 197 101-303 31-229 (234)
57 PRK12370 invasion protein regu 99.4 3.9E-10 8.5E-15 110.0 28.4 268 98-378 253-536 (553)
58 KOG1129 TPR repeat-containing 99.4 1.9E-10 4.1E-15 97.1 22.2 230 139-377 227-458 (478)
59 PF13041 PPR_2: PPR repeat fam 99.4 1.1E-12 2.4E-17 82.1 6.5 50 311-360 1-50 (50)
60 PF12569 NARP1: NMDA receptor- 99.4 3.9E-09 8.5E-14 99.7 33.1 292 107-411 10-333 (517)
61 TIGR02521 type_IV_pilW type IV 99.4 4.6E-10 9.9E-15 97.5 25.5 95 205-304 32-126 (234)
62 PF12569 NARP1: NMDA receptor- 99.4 2.9E-09 6.4E-14 100.5 31.3 88 143-231 12-104 (517)
63 KOG0547 Translocase of outer m 99.4 1.3E-08 2.8E-13 90.9 32.3 356 104-481 118-531 (606)
64 PF13041 PPR_2: PPR repeat fam 99.4 2E-12 4.4E-17 80.9 6.0 49 416-464 1-49 (50)
65 KOG1156 N-terminal acetyltrans 99.3 8.7E-08 1.9E-12 88.7 36.4 400 65-480 72-509 (700)
66 KOG1173 Anaphase-promoting com 99.3 6.8E-09 1.5E-13 94.4 27.8 283 134-428 243-532 (611)
67 KOG3785 Uncharacterized conser 99.3 1.8E-07 3.9E-12 80.4 33.5 388 69-480 58-488 (557)
68 KOG2376 Signal recognition par 99.3 2.4E-07 5.3E-12 85.0 36.0 124 68-198 14-138 (652)
69 KOG1173 Anaphase-promoting com 99.3 8E-09 1.7E-13 93.9 26.1 268 78-356 257-530 (611)
70 KOG1129 TPR repeat-containing 99.3 1.8E-09 3.9E-14 91.4 19.7 236 203-448 222-459 (478)
71 KOG2047 mRNA splicing factor [ 99.3 1.2E-06 2.6E-11 81.3 39.1 386 78-479 151-612 (835)
72 KOG1840 Kinesin light chain [C 99.2 1.3E-08 2.9E-13 94.9 27.0 198 283-480 247-477 (508)
73 KOG1174 Anaphase-promoting com 99.2 6.9E-08 1.5E-12 84.6 29.1 286 114-412 209-500 (564)
74 KOG1840 Kinesin light chain [C 99.2 1.7E-08 3.7E-13 94.2 24.6 242 203-445 198-477 (508)
75 cd05804 StaR_like StaR_like; a 99.2 4.1E-07 9E-12 84.5 33.9 89 249-339 122-212 (355)
76 COG3063 PilF Tfp pilus assembl 99.2 5.5E-08 1.2E-12 78.7 23.2 197 102-304 36-234 (250)
77 KOG4162 Predicted calmodulin-b 99.2 7E-07 1.5E-11 84.6 33.8 377 96-480 318-781 (799)
78 KOG4340 Uncharacterized conser 99.1 3.9E-07 8.4E-12 76.6 28.2 336 62-410 5-373 (459)
79 PRK11189 lipoprotein NlpI; Pro 99.1 1.5E-07 3.2E-12 84.3 28.0 216 115-342 40-265 (296)
80 cd05804 StaR_like StaR_like; a 99.1 1.1E-06 2.4E-11 81.6 34.2 198 101-304 6-213 (355)
81 PRK11189 lipoprotein NlpI; Pro 99.1 6E-08 1.3E-12 86.8 24.5 148 150-303 41-191 (296)
82 KOG3785 Uncharacterized conser 99.1 8.8E-07 1.9E-11 76.3 29.4 377 79-479 36-454 (557)
83 KOG1914 mRNA cleavage and poly 99.1 3E-06 6.6E-11 77.2 34.0 375 96-480 15-499 (656)
84 KOG2047 mRNA splicing factor [ 99.1 9.2E-06 2E-10 75.7 36.2 391 79-481 116-578 (835)
85 COG3063 PilF Tfp pilus assembl 99.1 3.7E-07 8E-12 74.0 23.5 196 173-375 38-234 (250)
86 KOG4162 Predicted calmodulin-b 99.0 6.9E-06 1.5E-10 78.1 34.3 364 76-447 334-783 (799)
87 KOG1174 Anaphase-promoting com 99.0 1.4E-05 3E-10 70.6 36.9 266 198-476 226-494 (564)
88 PRK04841 transcriptional regul 99.0 3.2E-06 7E-11 88.9 35.7 335 144-481 383-759 (903)
89 PF04733 Coatomer_E: Coatomer 99.0 2.6E-08 5.7E-13 87.7 16.9 249 144-411 10-264 (290)
90 KOG4340 Uncharacterized conser 98.9 5.3E-07 1.2E-11 75.8 21.3 328 137-480 12-373 (459)
91 KOG0548 Molecular co-chaperone 98.9 4.9E-06 1.1E-10 75.9 28.3 380 76-480 13-453 (539)
92 PF04733 Coatomer_E: Coatomer 98.9 1.2E-07 2.6E-12 83.6 16.4 251 178-448 9-266 (290)
93 KOG1125 TPR repeat-containing 98.9 5E-07 1.1E-11 82.9 20.4 223 180-410 295-525 (579)
94 KOG2376 Signal recognition par 98.9 4.8E-05 1E-09 70.4 32.8 192 103-305 14-252 (652)
95 KOG1070 rRNA processing protei 98.9 2.4E-06 5.2E-11 86.1 26.1 210 200-417 1454-1668(1710)
96 KOG0624 dsRNA-activated protei 98.9 3.7E-05 8E-10 66.3 29.5 299 134-448 37-371 (504)
97 PF12854 PPR_1: PPR repeat 98.9 3.4E-09 7.3E-14 59.4 3.6 32 413-444 2-33 (34)
98 KOG1914 mRNA cleavage and poly 98.8 9.2E-05 2E-09 67.9 34.3 151 293-446 347-500 (656)
99 PRK04841 transcriptional regul 98.8 4.1E-05 8.9E-10 80.7 35.6 336 112-448 385-761 (903)
100 KOG0624 dsRNA-activated protei 98.8 3.9E-05 8.4E-10 66.2 28.0 300 65-377 33-370 (504)
101 KOG1125 TPR repeat-containing 98.8 1E-06 2.2E-11 80.9 19.5 250 110-368 294-562 (579)
102 PF12854 PPR_1: PPR repeat 98.8 9.2E-09 2E-13 57.6 3.9 32 308-339 2-33 (34)
103 KOG3617 WD40 and TPR repeat-co 98.8 0.0001 2.2E-09 71.0 32.5 355 65-480 724-1107(1416)
104 TIGR03302 OM_YfiO outer membra 98.8 1.9E-06 4.1E-11 74.8 20.2 187 97-304 29-230 (235)
105 KOG0985 Vesicle coat protein c 98.8 0.0002 4.3E-09 70.6 34.6 319 97-466 980-1326(1666)
106 KOG0985 Vesicle coat protein c 98.8 0.00019 4.1E-09 70.7 34.3 331 65-442 982-1336(1666)
107 KOG1070 rRNA processing protei 98.8 9.3E-06 2E-10 82.1 26.3 233 237-476 1454-1694(1710)
108 PLN02789 farnesyltranstransfer 98.7 4.2E-05 9.2E-10 68.5 26.5 210 109-325 45-267 (320)
109 KOG1127 TPR repeat-containing 98.7 3.7E-05 8.1E-10 75.4 26.6 186 79-270 472-658 (1238)
110 PLN02789 farnesyltranstransfer 98.7 5.6E-05 1.2E-09 67.8 26.1 209 212-430 45-267 (320)
111 KOG1128 Uncharacterized conser 98.7 8.6E-05 1.9E-09 70.6 27.9 217 136-377 399-616 (777)
112 TIGR03302 OM_YfiO outer membra 98.6 6.7E-06 1.4E-10 71.3 19.7 187 276-481 32-231 (235)
113 KOG1128 Uncharacterized conser 98.6 5.7E-06 1.2E-10 78.2 19.8 116 290-410 498-614 (777)
114 COG5010 TadD Flp pilus assembl 98.6 1.4E-05 3.1E-10 66.4 19.6 165 132-303 64-228 (257)
115 PRK15179 Vi polysaccharide bio 98.6 2.3E-05 5E-10 77.5 24.2 149 96-248 81-229 (694)
116 COG5010 TadD Flp pilus assembl 98.6 1.1E-05 2.3E-10 67.2 18.1 151 77-230 78-228 (257)
117 KOG3081 Vesicle coat complex C 98.6 7.8E-05 1.7E-09 62.2 22.9 119 210-342 114-236 (299)
118 KOG3616 Selective LIM binding 98.6 7.1E-05 1.5E-09 71.1 25.0 184 256-476 746-931 (1636)
119 KOG0548 Molecular co-chaperone 98.5 0.00016 3.5E-09 66.3 25.7 348 109-481 10-420 (539)
120 COG4783 Putative Zn-dependent 98.5 7.4E-05 1.6E-09 67.8 23.4 139 213-377 315-454 (484)
121 KOG3081 Vesicle coat complex C 98.5 0.00013 2.7E-09 61.0 22.9 156 280-447 111-271 (299)
122 PRK14720 transcript cleavage f 98.5 8E-05 1.7E-09 74.6 25.5 220 169-429 30-268 (906)
123 KOG3616 Selective LIM binding 98.5 0.00015 3.3E-09 68.9 25.6 193 212-442 740-932 (1636)
124 PRK14720 transcript cleavage f 98.5 9.6E-05 2.1E-09 74.1 25.5 130 99-231 29-176 (906)
125 KOG2053 Mitochondrial inherita 98.5 0.0015 3.2E-08 63.9 39.0 228 39-272 13-256 (932)
126 PRK15179 Vi polysaccharide bio 98.5 6E-05 1.3E-09 74.7 23.8 131 169-304 85-215 (694)
127 KOG3617 WD40 and TPR repeat-co 98.5 0.001 2.2E-08 64.4 30.3 186 111-341 810-995 (1416)
128 PRK15359 type III secretion sy 98.5 1.6E-05 3.5E-10 62.5 15.3 93 104-197 27-119 (144)
129 PRK10370 formate-dependent nit 98.4 1.6E-05 3.4E-10 66.2 15.4 118 114-232 52-172 (198)
130 KOG2053 Mitochondrial inherita 98.4 0.0024 5.2E-08 62.6 39.7 368 64-445 73-534 (932)
131 PRK10370 formate-dependent nit 98.4 1.4E-05 3E-10 66.6 14.5 128 79-209 53-183 (198)
132 PRK15359 type III secretion sy 98.4 3.8E-05 8.2E-10 60.4 15.4 103 138-244 27-129 (144)
133 KOG1127 TPR repeat-containing 98.4 0.0013 2.8E-08 65.1 28.3 150 80-232 507-658 (1238)
134 TIGR02552 LcrH_SycD type III s 98.3 3.4E-05 7.3E-10 60.3 14.5 107 124-231 6-112 (135)
135 COG4783 Putative Zn-dependent 98.3 0.00081 1.8E-08 61.3 24.5 155 286-463 315-472 (484)
136 KOG3060 Uncharacterized conser 98.3 0.00074 1.6E-08 56.1 21.9 190 77-271 24-220 (289)
137 TIGR00756 PPR pentatricopeptid 98.3 1.4E-06 2.9E-11 49.7 4.4 33 420-452 2-34 (35)
138 KOG3060 Uncharacterized conser 98.3 0.0011 2.5E-08 55.0 21.9 186 219-411 27-219 (289)
139 PF10037 MRP-S27: Mitochondria 98.3 2.4E-05 5.2E-10 71.8 13.6 120 347-466 65-186 (429)
140 TIGR00756 PPR pentatricopeptid 98.3 1.9E-06 4.2E-11 49.0 4.3 33 315-347 2-34 (35)
141 PF09976 TPR_21: Tetratricopep 98.2 0.00012 2.5E-09 57.9 15.8 126 102-229 13-143 (145)
142 PF13812 PPR_3: Pentatricopept 98.2 2.5E-06 5.4E-11 48.2 4.3 33 419-451 2-34 (34)
143 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 7E-05 1.5E-09 68.5 15.4 123 280-409 172-294 (395)
144 PF13812 PPR_3: Pentatricopept 98.2 2.7E-06 5.8E-11 48.0 4.1 33 314-346 2-34 (34)
145 TIGR02552 LcrH_SycD type III s 98.2 0.0001 2.2E-09 57.6 14.0 98 100-198 16-113 (135)
146 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 7.3E-05 1.6E-09 68.4 14.5 125 136-268 170-294 (395)
147 PF10037 MRP-S27: Mitochondria 98.1 6.2E-05 1.3E-09 69.2 12.1 126 271-396 60-186 (429)
148 PF09976 TPR_21: Tetratricopep 98.0 0.00044 9.6E-09 54.6 15.1 85 249-337 56-142 (145)
149 PF08579 RPM2: Mitochondrial r 98.0 9.3E-05 2E-09 53.1 9.5 77 283-360 31-116 (120)
150 PF01535 PPR: PPR repeat; Int 98.0 1E-05 2.2E-10 44.4 3.5 29 420-448 2-30 (31)
151 PF08579 RPM2: Mitochondrial r 98.0 0.0002 4.4E-09 51.4 10.6 76 390-465 32-116 (120)
152 PF04840 Vps16_C: Vps16, C-ter 98.0 0.01 2.2E-07 53.3 24.0 102 320-441 184-285 (319)
153 TIGR02795 tol_pal_ybgF tol-pal 98.0 0.00033 7.2E-09 53.2 13.0 94 138-231 5-103 (119)
154 PF05843 Suf: Suppressor of fo 97.9 0.00031 6.7E-09 62.2 13.6 130 102-232 2-135 (280)
155 PF01535 PPR: PPR repeat; Int 97.9 1.3E-05 2.9E-10 44.0 3.2 29 315-343 2-30 (31)
156 PF05843 Suf: Suppressor of fo 97.9 0.00054 1.2E-08 60.7 14.2 131 314-447 2-136 (280)
157 TIGR02795 tol_pal_ybgF tol-pal 97.9 0.00066 1.4E-08 51.5 13.1 105 102-206 3-112 (119)
158 PF12895 Apc3: Anaphase-promot 97.8 6.1E-05 1.3E-09 53.1 6.2 81 396-478 2-83 (84)
159 cd00189 TPR Tetratricopeptide 97.8 0.00048 1E-08 49.6 11.1 89 141-230 6-94 (100)
160 KOG2796 Uncharacterized conser 97.8 0.0079 1.7E-07 50.5 18.3 139 137-281 179-323 (366)
161 PRK10866 outer membrane biogen 97.8 0.022 4.7E-07 49.3 22.6 65 100-164 31-98 (243)
162 PF04840 Vps16_C: Vps16, C-ter 97.7 0.031 6.7E-07 50.2 25.3 107 279-406 179-285 (319)
163 cd00189 TPR Tetratricopeptide 97.7 0.00085 1.8E-08 48.2 11.3 93 104-197 3-95 (100)
164 PF06239 ECSIT: Evolutionarily 97.7 0.00049 1.1E-08 56.1 10.2 87 275-362 45-152 (228)
165 PRK10866 outer membrane biogen 97.7 0.026 5.7E-07 48.7 21.9 56 178-233 40-98 (243)
166 PF12895 Apc3: Anaphase-promot 97.7 0.00011 2.4E-09 51.7 5.6 20 141-160 31-50 (84)
167 CHL00033 ycf3 photosystem I as 97.7 0.0018 4E-08 52.6 13.3 63 314-376 36-100 (168)
168 KOG2280 Vacuolar assembly/sort 97.6 0.06 1.3E-06 52.2 24.2 323 96-442 427-794 (829)
169 PF06239 ECSIT: Evolutionarily 97.6 0.0021 4.5E-08 52.5 12.7 115 296-432 33-152 (228)
170 PRK15363 pathogenicity island 97.6 0.0015 3.2E-08 50.8 11.0 86 180-269 45-130 (157)
171 PRK02603 photosystem I assembl 97.6 0.0063 1.4E-07 49.6 15.1 87 314-401 36-124 (172)
172 PLN03088 SGT1, suppressor of 97.5 0.0022 4.8E-08 59.0 13.5 96 142-241 9-104 (356)
173 KOG2280 Vacuolar assembly/sort 97.5 0.095 2.1E-06 50.9 23.9 319 60-406 425-793 (829)
174 PLN03088 SGT1, suppressor of 97.5 0.0036 7.8E-08 57.6 14.6 89 109-198 10-98 (356)
175 PF14559 TPR_19: Tetratricopep 97.5 0.0004 8.7E-09 46.5 6.3 62 112-175 2-63 (68)
176 PRK02603 photosystem I assembl 97.5 0.011 2.4E-07 48.2 15.8 84 136-219 36-121 (172)
177 COG5107 RNA14 Pre-mRNA 3'-end 97.5 0.076 1.6E-06 48.4 30.7 379 85-481 29-530 (660)
178 PRK15363 pathogenicity island 97.5 0.01 2.3E-07 46.2 14.3 97 138-235 38-134 (157)
179 COG3898 Uncharacterized membra 97.4 0.077 1.7E-06 47.5 29.4 316 76-412 64-392 (531)
180 CHL00033 ycf3 photosystem I as 97.4 0.0029 6.4E-08 51.4 11.7 96 348-444 35-139 (168)
181 PRK10153 DNA-binding transcrip 97.4 0.014 3.1E-07 56.3 17.8 146 198-376 331-481 (517)
182 PF07079 DUF1347: Protein of u 97.4 0.098 2.1E-06 47.8 37.4 195 278-479 299-521 (549)
183 PF13525 YfiO: Outer membrane 97.4 0.047 1E-06 45.9 18.7 54 215-269 16-69 (203)
184 PF13432 TPR_16: Tetratricopep 97.4 0.0013 2.8E-08 43.5 7.5 54 178-231 5-58 (65)
185 PF14938 SNAP: Soluble NSF att 97.4 0.032 7E-07 49.7 18.6 92 212-304 122-223 (282)
186 KOG0550 Molecular chaperone (D 97.4 0.05 1.1E-06 49.0 18.8 298 138-467 52-371 (486)
187 KOG0553 TPR repeat-containing 97.4 0.0034 7.4E-08 53.8 11.1 94 144-241 90-183 (304)
188 KOG0553 TPR repeat-containing 97.3 0.004 8.6E-08 53.4 11.3 100 323-426 91-190 (304)
189 PF12688 TPR_5: Tetratrico pep 97.3 0.017 3.8E-07 43.3 13.3 54 110-163 10-66 (120)
190 PRK10153 DNA-binding transcrip 97.3 0.019 4.1E-07 55.5 16.9 135 130-271 332-482 (517)
191 COG4700 Uncharacterized protei 97.3 0.061 1.3E-06 42.9 16.3 132 308-441 84-216 (251)
192 PF13432 TPR_16: Tetratricopep 97.3 0.0014 3E-08 43.3 6.6 57 108-164 4-60 (65)
193 KOG1130 Predicted G-alpha GTPa 97.2 0.009 1.9E-07 53.5 12.7 268 109-377 25-344 (639)
194 PF13525 YfiO: Outer membrane 97.2 0.097 2.1E-06 44.0 19.9 62 103-164 7-71 (203)
195 PF14938 SNAP: Soluble NSF att 97.2 0.021 4.6E-07 50.9 15.6 27 278-304 36-62 (282)
196 PF12921 ATP13: Mitochondrial 97.2 0.004 8.6E-08 47.2 9.2 98 203-323 1-98 (126)
197 PF13414 TPR_11: TPR repeat; P 97.2 0.0019 4.1E-08 43.3 6.8 63 101-163 3-66 (69)
198 PF14559 TPR_19: Tetratricopep 97.2 0.0011 2.5E-08 44.2 5.5 49 183-231 4-52 (68)
199 KOG0550 Molecular chaperone (D 97.2 0.18 3.9E-06 45.6 21.9 254 112-377 60-350 (486)
200 KOG2796 Uncharacterized conser 97.1 0.13 2.9E-06 43.4 18.4 133 315-448 179-316 (366)
201 PF12688 TPR_5: Tetratrico pep 97.1 0.056 1.2E-06 40.6 14.2 90 250-340 10-102 (120)
202 KOG1538 Uncharacterized conser 97.1 0.13 2.9E-06 49.1 19.4 38 155-195 620-657 (1081)
203 PF03704 BTAD: Bacterial trans 97.1 0.0041 8.8E-08 49.2 8.6 69 104-172 65-138 (146)
204 PF08631 SPO22: Meiosis protei 97.1 0.2 4.3E-06 44.5 25.4 121 112-233 4-150 (278)
205 KOG2041 WD40 repeat protein [G 97.1 0.33 7.2E-06 47.0 25.2 121 98-229 689-821 (1189)
206 PRK10803 tol-pal system protei 97.1 0.013 2.7E-07 51.2 12.1 26 206-231 182-207 (263)
207 PF03704 BTAD: Bacterial trans 97.0 0.036 7.7E-07 43.8 13.8 72 385-457 64-140 (146)
208 PRK10803 tol-pal system protei 97.0 0.016 3.6E-07 50.4 12.6 95 137-233 145-246 (263)
209 PF13414 TPR_11: TPR repeat; P 97.0 0.0044 9.5E-08 41.5 7.3 59 420-479 5-64 (69)
210 KOG1130 Predicted G-alpha GTPa 97.0 0.021 4.5E-07 51.3 12.5 131 350-480 197-342 (639)
211 COG4235 Cytochrome c biogenesi 97.0 0.084 1.8E-06 45.7 15.8 107 125-232 146-255 (287)
212 KOG2041 WD40 repeat protein [G 96.9 0.47 1E-05 46.0 24.1 189 76-304 745-950 (1189)
213 PF13371 TPR_9: Tetratricopept 96.8 0.0089 1.9E-07 40.5 7.6 57 109-165 3-59 (73)
214 PF13281 DUF4071: Domain of un 96.8 0.37 8.1E-06 44.0 19.5 187 259-448 120-335 (374)
215 COG4700 Uncharacterized protei 96.8 0.19 4E-06 40.2 18.6 127 344-474 85-214 (251)
216 COG3898 Uncharacterized membra 96.8 0.4 8.6E-06 43.2 33.3 294 138-447 85-392 (531)
217 COG4235 Cytochrome c biogenesi 96.7 0.079 1.7E-06 45.9 13.8 109 96-205 151-262 (287)
218 KOG1538 Uncharacterized conser 96.7 0.47 1E-05 45.6 19.5 84 385-479 749-843 (1081)
219 smart00299 CLH Clathrin heavy 96.6 0.19 4.2E-06 39.2 14.7 86 104-196 10-95 (140)
220 PRK15331 chaperone protein Sic 96.6 0.25 5.5E-06 38.9 14.9 87 358-446 47-133 (165)
221 PF12921 ATP13: Mitochondrial 96.6 0.058 1.3E-06 40.9 11.0 55 199-254 47-101 (126)
222 PF13424 TPR_12: Tetratricopep 96.4 0.013 2.7E-07 40.4 6.1 62 419-480 6-73 (78)
223 PF04053 Coatomer_WDAD: Coatom 96.3 0.12 2.6E-06 48.8 13.7 104 102-230 296-399 (443)
224 PF13371 TPR_9: Tetratricopept 96.3 0.028 6.1E-07 38.0 7.3 51 181-231 6-56 (73)
225 COG3118 Thioredoxin domain-con 96.2 0.53 1.1E-05 40.9 15.5 120 111-231 144-263 (304)
226 PF13170 DUF4003: Protein of u 96.1 0.9 2E-05 40.5 19.4 128 295-425 80-224 (297)
227 KOG0543 FKBP-type peptidyl-pro 96.1 0.092 2E-06 47.4 11.1 125 142-269 215-353 (397)
228 KOG2114 Vacuolar assembly/sort 96.1 1.7 3.7E-05 43.4 26.5 109 112-228 379-487 (933)
229 PF13281 DUF4071: Domain of un 96.1 1.1 2.4E-05 41.0 20.7 28 314-341 306-333 (374)
230 COG4105 ComL DNA uptake lipopr 96.0 0.8 1.7E-05 39.0 19.3 56 354-410 173-231 (254)
231 PLN03098 LPA1 LOW PSII ACCUMUL 96.0 0.19 4.1E-06 46.6 13.0 68 97-164 71-141 (453)
232 PF13424 TPR_12: Tetratricopep 96.0 0.024 5.1E-07 39.0 5.8 23 421-443 49-71 (78)
233 COG1729 Uncharacterized protei 96.0 0.16 3.5E-06 43.4 11.6 100 103-203 144-248 (262)
234 PF04053 Coatomer_WDAD: Coatom 96.0 0.34 7.3E-06 45.9 14.9 159 109-303 269-428 (443)
235 KOG3941 Intermediate in Toll s 95.9 0.1 2.2E-06 44.6 10.0 70 293-363 88-173 (406)
236 PF10300 DUF3808: Protein of u 95.8 0.5 1.1E-05 45.4 15.6 178 83-270 175-375 (468)
237 COG1729 Uncharacterized protei 95.8 0.14 3.1E-06 43.8 10.5 88 182-270 153-243 (262)
238 PLN03098 LPA1 LOW PSII ACCUMUL 95.8 0.21 4.6E-06 46.3 12.1 97 347-449 74-176 (453)
239 PRK15331 chaperone protein Sic 95.7 0.17 3.7E-06 39.9 9.8 82 113-195 49-130 (165)
240 PF10300 DUF3808: Protein of u 95.7 0.9 2E-05 43.7 16.8 26 138-163 191-216 (468)
241 KOG3941 Intermediate in Toll s 95.6 0.16 3.5E-06 43.4 10.0 105 310-433 64-173 (406)
242 PF09205 DUF1955: Domain of un 95.5 0.38 8.3E-06 36.1 10.3 64 350-414 88-151 (161)
243 PF13170 DUF4003: Protein of u 95.5 1.8 3.8E-05 38.7 18.6 133 258-392 78-226 (297)
244 smart00299 CLH Clathrin heavy 95.4 0.93 2E-05 35.3 15.4 43 282-326 12-54 (140)
245 KOG1941 Acetylcholine receptor 95.4 1.9 4E-05 38.7 16.2 44 182-225 18-64 (518)
246 KOG0543 FKBP-type peptidyl-pro 95.4 0.56 1.2E-05 42.6 13.0 63 385-448 259-321 (397)
247 KOG2610 Uncharacterized conser 95.3 1.6 3.4E-05 38.7 15.1 186 287-476 113-309 (491)
248 PF13428 TPR_14: Tetratricopep 95.3 0.071 1.5E-06 31.7 5.2 40 205-247 2-41 (44)
249 KOG1258 mRNA processing protei 95.2 3.1 6.7E-05 40.0 25.7 352 96-473 40-420 (577)
250 COG4105 ComL DNA uptake lipopr 95.2 1.7 3.7E-05 37.1 18.7 52 113-164 46-100 (254)
251 PF13428 TPR_14: Tetratricopep 95.1 0.082 1.8E-06 31.4 5.1 38 103-140 3-40 (44)
252 PF04184 ST7: ST7 protein; In 95.1 2.2 4.8E-05 40.1 16.2 78 280-357 262-340 (539)
253 KOG2114 Vacuolar assembly/sort 95.1 1 2.2E-05 44.9 14.8 245 137-411 336-589 (933)
254 PF13512 TPR_18: Tetratricopep 95.1 1.1 2.3E-05 34.7 12.1 84 102-185 11-97 (142)
255 PF07079 DUF1347: Protein of u 95.0 3 6.5E-05 38.7 32.9 386 61-460 75-532 (549)
256 COG0457 NrfG FOG: TPR repeat [ 95.0 2 4.4E-05 36.5 25.9 224 217-448 36-266 (291)
257 COG5107 RNA14 Pre-mRNA 3'-end 95.0 3.1 6.6E-05 38.6 31.7 142 313-460 397-542 (660)
258 COG3629 DnrI DNA-binding trans 94.8 0.38 8.2E-06 41.9 10.1 60 103-162 155-214 (280)
259 KOG1920 IkappaB kinase complex 94.8 4.4 9.5E-05 42.4 18.5 24 454-477 1185-1208(1265)
260 KOG2610 Uncharacterized conser 94.7 2.9 6.3E-05 37.1 18.0 152 112-267 114-272 (491)
261 PF13512 TPR_18: Tetratricopep 94.7 1.2 2.5E-05 34.4 11.3 53 180-232 20-75 (142)
262 PRK11906 transcriptional regul 94.7 3 6.6E-05 39.0 15.9 133 205-341 252-400 (458)
263 PF02259 FAT: FAT domain; Int 94.4 4.1 8.8E-05 37.7 22.5 66 312-377 145-213 (352)
264 PRK11906 transcriptional regul 94.4 4.4 9.6E-05 38.0 17.0 129 102-231 252-399 (458)
265 COG4649 Uncharacterized protei 94.2 2.4 5.1E-05 33.8 15.6 139 102-242 60-204 (221)
266 KOG1941 Acetylcholine receptor 94.1 1.9 4.1E-05 38.7 12.8 45 112-156 17-64 (518)
267 PF04097 Nic96: Nup93/Nic96; 94.1 7.3 0.00016 39.1 19.6 59 106-164 116-181 (613)
268 PF08631 SPO22: Meiosis protei 94.0 4.3 9.2E-05 36.1 24.8 16 428-443 256-271 (278)
269 COG3629 DnrI DNA-binding trans 94.0 0.74 1.6E-05 40.2 10.1 59 351-410 156-214 (280)
270 KOG1920 IkappaB kinase complex 93.9 9.7 0.00021 40.0 22.6 112 315-444 941-1052(1265)
271 KOG1585 Protein required for f 93.8 3.6 7.8E-05 34.8 15.3 53 388-441 195-250 (308)
272 PF09205 DUF1955: Domain of un 93.8 2.3 4.9E-05 32.2 14.1 141 214-380 12-152 (161)
273 PF04184 ST7: ST7 protein; In 93.4 7.2 0.00016 36.9 19.1 55 355-409 266-321 (539)
274 COG4785 NlpI Lipoprotein NlpI, 93.4 4 8.8E-05 33.9 14.2 65 100-164 98-162 (297)
275 KOG4555 TPR repeat-containing 93.3 2.1 4.5E-05 32.2 10.0 90 358-448 53-145 (175)
276 KOG1585 Protein required for f 93.3 4.5 9.8E-05 34.3 14.2 87 135-230 31-117 (308)
277 KOG4570 Uncharacterized conser 93.3 1.8 4E-05 37.9 11.1 48 363-410 115-162 (418)
278 PF10602 RPN7: 26S proteasome 93.2 1.7 3.7E-05 35.5 10.6 62 102-163 37-101 (177)
279 COG4649 Uncharacterized protei 93.1 3.7 8.1E-05 32.7 15.4 53 215-270 143-195 (221)
280 PF10602 RPN7: 26S proteasome 93.0 1.5 3.3E-05 35.7 10.1 62 349-410 37-100 (177)
281 KOG4555 TPR repeat-containing 92.9 2.9 6.2E-05 31.6 10.1 47 146-193 54-100 (175)
282 cd00923 Cyt_c_Oxidase_Va Cytoc 92.9 0.63 1.4E-05 32.7 6.3 58 153-210 25-82 (103)
283 KOG1550 Extracellular protein 92.7 5.5 0.00012 39.5 15.3 185 258-450 228-429 (552)
284 PF02284 COX5A: Cytochrome c o 92.4 1.5 3.2E-05 31.3 7.7 59 153-211 28-86 (108)
285 PF13176 TPR_7: Tetratricopept 92.3 0.35 7.6E-06 27.1 3.9 24 421-444 2-25 (36)
286 PF07035 Mic1: Colon cancer-as 92.2 5.2 0.00011 32.1 15.9 101 298-409 15-115 (167)
287 KOG4570 Uncharacterized conser 91.8 1.2 2.6E-05 39.0 8.1 49 292-341 115-163 (418)
288 COG3947 Response regulator con 91.6 8.9 0.00019 33.5 15.1 71 386-457 282-357 (361)
289 KOG1258 mRNA processing protei 91.3 15 0.00033 35.6 32.9 84 79-164 93-180 (577)
290 PF13176 TPR_7: Tetratricopept 91.1 0.51 1.1E-05 26.5 3.8 26 206-231 1-26 (36)
291 PF13431 TPR_17: Tetratricopep 91.1 0.3 6.4E-06 27.1 2.7 27 128-154 6-32 (34)
292 COG3118 Thioredoxin domain-con 91.0 10 0.00022 33.3 17.1 52 145-197 144-195 (304)
293 cd00923 Cyt_c_Oxidase_Va Cytoc 90.4 1.9 4.1E-05 30.4 6.6 62 257-320 22-83 (103)
294 PF07035 Mic1: Colon cancer-as 90.4 8 0.00017 31.0 15.1 136 262-412 14-149 (167)
295 PRK15180 Vi polysaccharide bio 90.2 16 0.00034 34.4 14.0 203 274-482 286-488 (831)
296 PF00637 Clathrin: Region in C 90.0 0.14 3E-06 40.2 1.0 84 354-444 13-96 (143)
297 PF09613 HrpB1_HrpK: Bacterial 89.7 8.7 0.00019 30.4 12.1 50 182-231 22-71 (160)
298 COG1747 Uncharacterized N-term 89.7 19 0.00041 34.3 20.5 169 96-272 61-235 (711)
299 PF02284 COX5A: Cytochrome c o 89.7 2.9 6.3E-05 29.9 7.1 62 257-320 25-86 (108)
300 COG0457 NrfG FOG: TPR repeat [ 89.4 12 0.00026 31.5 29.0 83 149-231 37-122 (291)
301 TIGR02561 HrpB1_HrpK type III 89.1 9 0.0002 29.8 10.0 53 113-165 22-74 (153)
302 PF11207 DUF2989: Protein of u 88.7 4.4 9.4E-05 33.4 8.6 73 151-224 122-198 (203)
303 COG1747 Uncharacterized N-term 88.4 24 0.00052 33.7 20.8 181 274-463 63-249 (711)
304 COG4455 ImpE Protein of avirul 88.2 3.7 8E-05 34.1 7.8 55 107-161 7-61 (273)
305 PF13929 mRNA_stabil: mRNA sta 88.2 18 0.00038 31.9 16.6 135 329-463 144-288 (292)
306 KOG0890 Protein kinase of the 88.1 57 0.0012 37.7 28.0 149 140-301 1388-1542(2382)
307 PF00637 Clathrin: Region in C 87.9 0.25 5.5E-06 38.7 1.2 129 318-468 12-140 (143)
308 PF10345 Cohesin_load: Cohesin 87.8 33 0.00071 34.7 19.5 188 293-481 37-253 (608)
309 KOG1586 Protein required for f 87.8 12 0.00026 31.7 10.5 18 110-127 23-40 (288)
310 PF09613 HrpB1_HrpK: Bacterial 87.5 13 0.00027 29.5 11.8 53 112-164 21-73 (160)
311 PRK14956 DNA polymerase III su 87.5 10 0.00023 36.3 11.5 95 55-171 190-284 (484)
312 PF11207 DUF2989: Protein of u 87.2 5.8 0.00013 32.7 8.5 72 187-261 123-197 (203)
313 PRK11619 lytic murein transgly 86.9 38 0.00082 34.3 29.7 117 326-445 254-373 (644)
314 COG2909 MalT ATP-dependent tra 86.7 41 0.00089 34.6 27.1 303 98-408 320-684 (894)
315 PF00515 TPR_1: Tetratricopept 86.3 1.6 3.5E-05 23.8 3.6 26 421-446 4-29 (34)
316 PF13929 mRNA_stabil: mRNA sta 86.1 23 0.0005 31.2 16.3 144 82-229 113-263 (292)
317 KOG4234 TPR repeat-containing 86.1 12 0.00026 30.8 9.4 90 357-448 104-198 (271)
318 COG4455 ImpE Protein of avirul 86.0 5.9 0.00013 33.0 7.8 76 137-213 3-81 (273)
319 PF13374 TPR_10: Tetratricopep 85.9 1.9 4E-05 24.8 4.0 27 419-445 3-29 (42)
320 PRK11619 lytic murein transgly 85.9 43 0.00092 34.0 37.9 233 98-340 126-373 (644)
321 PF00515 TPR_1: Tetratricopept 85.8 2.4 5.2E-05 23.1 4.2 28 384-411 2-29 (34)
322 PRK07003 DNA polymerase III su 85.4 26 0.00057 35.8 13.4 77 55-132 188-276 (830)
323 PF13762 MNE1: Mitochondrial s 85.4 16 0.00034 28.5 12.3 80 351-430 42-127 (145)
324 PF07719 TPR_2: Tetratricopept 85.4 3.5 7.7E-05 22.2 4.8 26 206-231 3-28 (34)
325 PF13431 TPR_17: Tetratricopep 85.1 0.97 2.1E-05 25.0 2.3 24 237-261 9-32 (34)
326 KOG0276 Vesicle coat complex C 85.0 13 0.00028 36.1 10.6 45 181-230 648-692 (794)
327 KOG4648 Uncharacterized conser 85.0 2.8 6E-05 37.3 6.0 51 322-374 106-157 (536)
328 PF13374 TPR_10: Tetratricopep 85.0 2.3 4.9E-05 24.4 4.1 28 454-481 3-30 (42)
329 PF04097 Nic96: Nup93/Nic96; 84.9 47 0.001 33.6 15.7 42 176-217 117-158 (613)
330 PF02259 FAT: FAT domain; Int 84.4 34 0.00073 31.5 23.4 65 276-341 145-212 (352)
331 TIGR02561 HrpB1_HrpK type III 84.4 18 0.00038 28.3 11.5 49 182-232 22-72 (153)
332 KOG4077 Cytochrome c oxidase, 84.0 6.5 0.00014 29.4 6.6 59 153-211 67-125 (149)
333 KOG1550 Extracellular protein 83.9 49 0.0011 33.0 19.1 151 256-414 263-428 (552)
334 PF07719 TPR_2: Tetratricopept 83.6 3.5 7.5E-05 22.3 4.2 24 456-479 4-27 (34)
335 COG2976 Uncharacterized protei 83.0 25 0.00054 28.9 12.6 130 312-448 53-189 (207)
336 PF10579 Rapsyn_N: Rapsyn N-te 83.0 4.3 9.2E-05 27.5 4.9 46 395-440 18-65 (80)
337 PF13174 TPR_6: Tetratricopept 82.9 3.4 7.4E-05 22.1 4.0 25 209-233 5-29 (33)
338 PLN03025 replication factor C 82.6 38 0.00083 30.8 15.1 34 56-89 169-202 (319)
339 COG3947 Response regulator con 82.4 34 0.00074 30.1 16.5 42 118-160 150-191 (361)
340 PRK12323 DNA polymerase III su 82.3 30 0.00065 34.7 12.3 56 35-90 167-228 (700)
341 PF13174 TPR_6: Tetratricopept 82.0 3.9 8.5E-05 21.8 4.0 24 458-481 5-28 (33)
342 TIGR03504 FimV_Cterm FimV C-te 81.3 4.1 8.9E-05 24.1 3.9 22 425-446 6-27 (44)
343 PF10579 Rapsyn_N: Rapsyn N-te 81.2 9.1 0.0002 26.0 5.9 47 430-476 18-66 (80)
344 TIGR02508 type_III_yscG type I 80.4 19 0.00041 25.9 7.6 11 82-92 22-32 (115)
345 PF07721 TPR_4: Tetratricopept 80.0 2.5 5.5E-05 21.5 2.5 20 458-477 6-25 (26)
346 KOG2297 Predicted translation 79.9 43 0.00093 29.7 17.0 36 40-75 33-70 (412)
347 KOG0890 Protein kinase of the 79.8 1.3E+02 0.0028 35.1 25.0 311 78-413 1396-1732(2382)
348 KOG4507 Uncharacterized conser 79.6 6.8 0.00015 37.7 6.7 103 147-252 619-721 (886)
349 PF13181 TPR_8: Tetratricopept 79.5 5.6 0.00012 21.5 4.1 27 420-446 3-29 (34)
350 KOG0991 Replication factor C, 79.3 39 0.00084 28.8 10.3 35 133-168 237-271 (333)
351 KOG4234 TPR repeat-containing 79.2 35 0.00076 28.2 11.1 90 322-413 104-198 (271)
352 KOG0276 Vesicle coat complex C 79.0 29 0.00063 33.9 10.6 98 325-443 649-746 (794)
353 TIGR02397 dnaX_nterm DNA polym 78.7 53 0.0012 30.4 12.7 30 138-168 247-276 (355)
354 PF13181 TPR_8: Tetratricopept 78.2 6.4 0.00014 21.2 4.1 28 454-481 2-29 (34)
355 KOG2396 HAT (Half-A-TPR) repea 77.8 68 0.0015 30.8 20.2 92 281-376 464-558 (568)
356 KOG2066 Vacuolar assembly/sort 77.6 86 0.0019 31.9 25.6 124 101-231 392-532 (846)
357 PF13762 MNE1: Mitochondrial s 77.5 25 0.00054 27.4 8.2 81 103-183 41-128 (145)
358 KOG4077 Cytochrome c oxidase, 77.3 11 0.00025 28.2 5.9 60 401-461 67-126 (149)
359 cd08819 CARD_MDA5_2 Caspase ac 76.6 23 0.00049 24.7 7.2 67 119-190 20-86 (88)
360 TIGR03504 FimV_Cterm FimV C-te 76.5 7 0.00015 23.2 3.9 22 320-341 6-27 (44)
361 PRK08691 DNA polymerase III su 76.4 58 0.0013 33.1 12.3 37 55-91 188-224 (709)
362 PF08424 NRDE-2: NRDE-2, neces 76.3 62 0.0013 29.5 16.2 79 152-231 48-129 (321)
363 KOG4648 Uncharacterized conser 75.5 46 0.001 30.0 10.2 89 77-169 109-197 (536)
364 PF11848 DUF3368: Domain of un 75.4 13 0.00029 22.4 5.1 33 429-461 13-45 (48)
365 PRK09687 putative lyase; Provi 75.1 61 0.0013 28.9 26.8 136 312-463 141-277 (280)
366 COG2909 MalT ATP-dependent tra 74.7 1.1E+02 0.0024 31.7 27.1 223 256-478 429-684 (894)
367 PF09797 NatB_MDM20: N-acetylt 74.0 21 0.00045 33.3 8.6 125 103-228 182-310 (365)
368 PF07163 Pex26: Pex26 protein; 73.9 52 0.0011 28.9 9.8 89 281-371 87-181 (309)
369 PRK14951 DNA polymerase III su 73.7 43 0.00093 33.6 10.9 33 135-168 251-283 (618)
370 COG2178 Predicted RNA-binding 73.0 51 0.0011 27.1 10.6 61 144-204 38-103 (204)
371 PF07163 Pex26: Pex26 protein; 72.8 51 0.0011 29.0 9.5 86 108-193 90-181 (309)
372 PHA02875 ankyrin repeat protei 72.5 41 0.00089 31.9 10.5 205 224-454 15-231 (413)
373 cd08819 CARD_MDA5_2 Caspase ac 71.9 30 0.00065 24.1 6.5 65 403-473 22-86 (88)
374 KOG2066 Vacuolar assembly/sort 71.8 1.2E+02 0.0026 30.9 27.3 102 108-216 363-467 (846)
375 PF06552 TOM20_plant: Plant sp 71.6 18 0.0004 29.3 6.3 51 235-287 63-123 (186)
376 KOG0292 Vesicle coat complex C 71.0 70 0.0015 33.0 11.3 189 64-304 592-780 (1202)
377 KOG2034 Vacuolar sorting prote 70.6 1.4E+02 0.003 31.0 23.2 277 178-480 366-688 (911)
378 KOG1464 COP9 signalosome, subu 70.1 74 0.0016 27.7 17.1 69 164-232 20-93 (440)
379 PRK07764 DNA polymerase III su 69.5 1.5E+02 0.0033 31.2 15.9 69 96-167 196-279 (824)
380 PRK14958 DNA polymerase III su 69.4 1.1E+02 0.0023 30.2 12.4 37 133-170 244-280 (509)
381 PF11663 Toxin_YhaV: Toxin wit 68.9 6.6 0.00014 29.8 3.2 30 396-427 108-137 (140)
382 COG2976 Uncharacterized protei 68.7 66 0.0014 26.6 13.4 127 276-413 53-189 (207)
383 PF11846 DUF3366: Domain of un 68.7 10 0.00022 31.5 4.8 48 82-129 125-172 (193)
384 COG0735 Fur Fe2+/Zn2+ uptake r 68.5 37 0.00081 26.6 7.6 43 425-467 27-69 (145)
385 PRK14965 DNA polymerase III su 68.4 91 0.002 31.3 11.9 32 60-91 193-224 (576)
386 PRK10564 maltose regulon perip 68.0 12 0.00027 33.0 5.1 38 236-274 252-289 (303)
387 PF09454 Vps23_core: Vps23 cor 67.6 14 0.0003 24.2 4.1 51 99-149 6-56 (65)
388 PRK14961 DNA polymerase III su 67.4 49 0.0011 30.8 9.5 37 132-169 243-279 (363)
389 PF11838 ERAP1_C: ERAP1-like C 67.2 99 0.0022 28.1 22.3 111 293-407 146-261 (324)
390 KOG2063 Vacuolar assembly/sort 66.2 1.8E+02 0.0039 30.7 14.9 38 323-360 601-638 (877)
391 cd00280 TRFH Telomeric Repeat 66.0 55 0.0012 26.7 7.8 47 117-163 85-139 (200)
392 KOG0687 26S proteasome regulat 65.5 1.1E+02 0.0023 27.7 13.6 110 350-461 106-224 (393)
393 PRK06645 DNA polymerase III su 65.3 76 0.0016 31.1 10.4 36 133-169 256-291 (507)
394 PRK10941 hypothetical protein; 65.0 1E+02 0.0022 27.3 11.1 58 138-196 184-241 (269)
395 PRK10564 maltose regulon perip 64.2 18 0.00039 32.0 5.4 44 415-458 253-297 (303)
396 PF11848 DUF3368: Domain of un 63.8 30 0.00065 20.9 4.9 32 147-178 14-45 (48)
397 PRK05896 DNA polymerase III su 63.8 1.2E+02 0.0026 30.4 11.4 22 147-168 257-278 (605)
398 PRK14971 DNA polymerase III su 63.4 78 0.0017 32.0 10.4 30 138-168 251-280 (614)
399 PF09477 Type_III_YscG: Bacter 63.3 56 0.0012 23.9 9.1 17 181-197 80-96 (116)
400 COG5187 RPN7 26S proteasome re 63.2 1.1E+02 0.0024 27.1 12.0 119 347-467 114-241 (412)
401 PF08311 Mad3_BUB1_I: Mad3/BUB 62.8 66 0.0014 24.5 9.6 43 401-443 81-124 (126)
402 PF11846 DUF3366: Domain of un 62.6 43 0.00094 27.7 7.4 33 309-341 140-172 (193)
403 smart00028 TPR Tetratricopepti 62.5 16 0.00035 18.4 3.5 25 421-445 4-28 (34)
404 KOG2168 Cullins [Cell cycle co 61.8 2E+02 0.0044 29.8 15.9 59 176-234 331-389 (835)
405 PRK05563 DNA polymerase III su 61.7 89 0.0019 31.2 10.4 30 138-168 249-278 (559)
406 PRK14952 DNA polymerase III su 61.6 73 0.0016 31.9 9.7 28 140-168 251-278 (584)
407 PF06552 TOM20_plant: Plant sp 61.3 39 0.00084 27.5 6.3 63 117-181 51-124 (186)
408 COG4785 NlpI Lipoprotein NlpI, 61.3 1E+02 0.0022 26.1 16.6 29 314-342 238-266 (297)
409 COG5159 RPN6 26S proteasome re 61.2 1.2E+02 0.0026 26.9 13.5 19 423-441 130-148 (421)
410 PF08424 NRDE-2: NRDE-2, neces 61.1 1.3E+02 0.0029 27.4 19.0 122 117-239 47-189 (321)
411 PRK14959 DNA polymerase III su 60.8 1.4E+02 0.003 30.2 11.3 30 60-89 193-222 (624)
412 KOG0687 26S proteasome regulat 60.3 1.3E+02 0.0029 27.1 16.4 135 273-411 66-209 (393)
413 PRK14963 DNA polymerase III su 59.9 1.2E+02 0.0025 29.9 10.7 32 136-168 243-274 (504)
414 KOG4642 Chaperone-dependent E3 59.9 1.1E+02 0.0025 26.2 10.1 116 323-442 20-141 (284)
415 COG0735 Fur Fe2+/Zn2+ uptake r 59.5 68 0.0015 25.2 7.5 63 123-185 8-70 (145)
416 COG2256 MGS1 ATPase related to 59.4 1.6E+02 0.0034 27.7 14.3 95 65-174 190-288 (436)
417 smart00386 HAT HAT (Half-A-TPR 59.3 24 0.00052 18.4 3.8 25 116-140 2-26 (33)
418 PRK09687 putative lyase; Provi 59.2 1.3E+02 0.0029 26.8 30.3 233 168-428 35-277 (280)
419 COG5108 RPO41 Mitochondrial DN 59.1 57 0.0012 32.4 8.1 75 353-430 33-115 (1117)
420 PF08314 Sec39: Secretory path 58.8 1.6E+02 0.0035 30.6 12.1 217 80-331 408-651 (715)
421 PF14689 SPOB_a: Sensor_kinase 58.8 29 0.00063 22.4 4.5 21 354-374 29-49 (62)
422 PF14689 SPOB_a: Sensor_kinase 58.5 31 0.00068 22.2 4.6 23 423-445 28-50 (62)
423 KOG3807 Predicted membrane pro 58.5 93 0.002 28.0 8.7 120 220-353 232-351 (556)
424 PF10475 DUF2450: Protein of u 58.4 88 0.0019 28.1 9.0 113 283-407 104-221 (291)
425 KOG0889 Histone acetyltransfer 57.8 4.6E+02 0.01 32.6 16.8 91 66-162 2416-2509(3550)
426 PRK14960 DNA polymerase III su 57.7 1.3E+02 0.0028 30.6 10.5 35 57-91 189-223 (702)
427 COG2812 DnaX DNA polymerase II 57.2 2E+02 0.0043 28.2 12.3 60 35-94 162-227 (515)
428 PF11817 Foie-gras_1: Foie gra 57.0 56 0.0012 28.4 7.4 58 423-480 183-245 (247)
429 KOG1586 Protein required for f 56.8 1.3E+02 0.0028 25.9 20.5 29 354-382 160-188 (288)
430 KOG4507 Uncharacterized conser 56.8 1.1E+02 0.0024 30.1 9.4 131 82-215 590-721 (886)
431 PRK14962 DNA polymerase III su 56.1 2E+02 0.0044 28.0 14.7 33 138-171 247-279 (472)
432 PRK14969 DNA polymerase III su 56.0 2.2E+02 0.0047 28.3 12.2 26 140-166 251-276 (527)
433 PRK07994 DNA polymerase III su 55.9 1.5E+02 0.0032 30.2 10.7 35 58-92 191-225 (647)
434 KOG0686 COP9 signalosome, subu 55.7 1.8E+02 0.0039 27.3 14.3 58 136-193 151-210 (466)
435 PF07575 Nucleopor_Nup85: Nup8 55.6 2.3E+02 0.005 28.4 21.1 114 346-461 403-538 (566)
436 KOG0686 COP9 signalosome, subu 55.5 1.8E+02 0.0039 27.2 14.7 17 361-377 317-333 (466)
437 KOG2908 26S proteasome regulat 55.2 1.4E+02 0.0031 27.1 9.3 79 176-254 81-169 (380)
438 KOG2659 LisH motif-containing 55.2 1.3E+02 0.0029 25.6 9.2 67 96-162 21-91 (228)
439 KOG2908 26S proteasome regulat 55.0 1.7E+02 0.0036 26.7 9.7 68 317-384 79-156 (380)
440 KOG0991 Replication factor C, 54.1 1.4E+02 0.0031 25.6 13.2 36 346-382 237-272 (333)
441 PF09868 DUF2095: Uncharacteri 54.0 56 0.0012 24.0 5.5 37 107-143 67-103 (128)
442 PF09454 Vps23_core: Vps23 cor 54.0 56 0.0012 21.4 5.2 54 415-469 5-58 (65)
443 KOG1464 COP9 signalosome, subu 53.9 1.5E+02 0.0033 25.9 21.0 204 96-303 21-257 (440)
444 PRK09111 DNA polymerase III su 53.9 2.5E+02 0.0054 28.4 14.6 29 140-169 264-292 (598)
445 PF08311 Mad3_BUB1_I: Mad3/BUB 53.8 97 0.0021 23.6 7.9 41 119-159 81-123 (126)
446 KOG2396 HAT (Half-A-TPR) repea 53.3 2.2E+02 0.0048 27.6 33.9 82 82-165 88-170 (568)
447 KOG4567 GTPase-activating prot 53.3 90 0.0019 27.9 7.6 57 333-394 263-319 (370)
448 PF10366 Vps39_1: Vacuolar sor 52.8 90 0.002 23.0 7.5 27 420-446 41-67 (108)
449 PF10475 DUF2450: Protein of u 51.8 1.5E+02 0.0033 26.6 9.4 24 208-231 131-154 (291)
450 PF09670 Cas_Cas02710: CRISPR- 51.3 2.1E+02 0.0047 26.8 11.8 17 288-304 142-158 (379)
451 PF12862 Apc5: Anaphase-promot 50.7 88 0.0019 22.2 6.7 21 143-163 49-69 (94)
452 KOG4279 Serine/threonine prote 50.4 1.5E+02 0.0032 30.3 9.3 182 259-448 180-396 (1226)
453 PF11838 ERAP1_C: ERAP1-like C 50.2 2E+02 0.0043 26.1 14.8 145 329-478 146-304 (324)
454 cd00280 TRFH Telomeric Repeat 49.6 1.3E+02 0.0028 24.7 7.4 22 355-376 118-139 (200)
455 PRK14970 DNA polymerase III su 49.4 1.2E+02 0.0026 28.2 8.9 70 96-168 184-267 (367)
456 PRK06305 DNA polymerase III su 49.4 1.5E+02 0.0032 28.7 9.5 28 140-168 253-280 (451)
457 KOG2659 LisH motif-containing 49.2 1.7E+02 0.0036 25.0 9.1 99 344-444 22-129 (228)
458 PHA02875 ankyrin repeat protei 49.0 2.4E+02 0.0052 26.7 17.5 211 176-418 5-230 (413)
459 PRK11639 zinc uptake transcrip 48.8 1.3E+02 0.0028 24.3 7.8 60 127-186 17-76 (169)
460 PRK14950 DNA polymerase III su 48.4 2.3E+02 0.0049 28.6 10.9 81 85-168 185-279 (585)
461 PF09670 Cas_Cas02710: CRISPR- 48.3 2.3E+02 0.0049 26.7 10.3 57 320-377 138-198 (379)
462 COG4003 Uncharacterized protei 47.4 84 0.0018 21.5 5.2 30 107-136 37-66 (98)
463 PRK06647 DNA polymerase III su 46.9 2.4E+02 0.0052 28.2 10.6 30 138-168 249-278 (563)
464 PRK07914 hypothetical protein; 46.8 1.6E+02 0.0036 26.8 9.1 22 147-168 207-228 (320)
465 PRK13184 pknD serine/threonine 46.6 4E+02 0.0087 28.6 26.1 98 140-239 480-587 (932)
466 PF11663 Toxin_YhaV: Toxin wit 46.6 26 0.00056 26.8 3.1 29 327-357 109-137 (140)
467 PF10255 Paf67: RNA polymerase 46.4 1E+02 0.0022 29.0 7.6 101 168-269 70-191 (404)
468 PRK11639 zinc uptake transcrip 46.3 1.5E+02 0.0032 24.0 7.7 62 374-436 17-78 (169)
469 TIGR02508 type_III_yscG type I 46.2 1.1E+02 0.0024 22.1 8.4 78 364-448 21-98 (115)
470 PRK09462 fur ferric uptake reg 45.3 1.5E+02 0.0032 23.3 7.6 60 374-434 8-68 (148)
471 PF09477 Type_III_YscG: Bacter 45.3 1.2E+02 0.0026 22.3 8.1 81 78-165 19-99 (116)
472 KOG2582 COP9 signalosome, subu 45.3 2.5E+02 0.0055 25.9 15.3 53 360-412 289-345 (422)
473 PRK14957 DNA polymerase III su 44.9 2.8E+02 0.0062 27.6 10.7 28 138-166 249-276 (546)
474 PF09986 DUF2225: Uncharacteri 44.8 1.9E+02 0.0042 24.5 10.2 96 357-452 86-199 (214)
475 KOG1308 Hsp70-interacting prot 44.6 23 0.00049 32.0 2.9 92 182-277 126-217 (377)
476 PF04910 Tcf25: Transcriptiona 44.5 2.7E+02 0.0058 26.0 16.9 188 245-447 14-222 (360)
477 PRK14953 DNA polymerase III su 43.5 2.6E+02 0.0056 27.4 10.2 71 96-169 195-279 (486)
478 COG5187 RPN7 26S proteasome re 43.5 2.4E+02 0.0052 25.1 12.3 26 135-160 115-140 (412)
479 PF15297 CKAP2_C: Cytoskeleton 42.6 2.7E+02 0.0059 25.5 9.8 63 400-464 120-186 (353)
480 KOG0989 Replication factor C, 42.2 2.6E+02 0.0057 25.2 13.1 40 54-93 197-236 (346)
481 cd07153 Fur_like Ferric uptake 41.9 76 0.0017 23.5 5.2 46 389-434 6-51 (116)
482 PRK14949 DNA polymerase III su 41.7 3.1E+02 0.0068 29.2 10.6 32 60-91 193-224 (944)
483 TIGR02710 CRISPR-associated pr 41.7 3E+02 0.0065 25.8 11.2 52 322-373 139-196 (380)
484 PRK14700 recombination factor 41.7 2.6E+02 0.0057 25.1 15.8 107 62-184 62-175 (300)
485 KOG3636 Uncharacterized conser 41.3 3.2E+02 0.0069 26.0 14.4 185 82-288 72-271 (669)
486 KOG2063 Vacuolar assembly/sort 41.2 4.7E+02 0.01 27.8 17.9 115 102-216 505-638 (877)
487 KOG1308 Hsp70-interacting prot 40.9 26 0.00057 31.6 2.8 86 79-166 128-213 (377)
488 PF11817 Foie-gras_1: Foie gra 40.5 1.7E+02 0.0036 25.5 7.8 57 246-303 183-244 (247)
489 PRK07003 DNA polymerase III su 40.5 4.6E+02 0.0099 27.5 15.1 45 258-304 180-225 (830)
490 COG1466 HolA DNA polymerase II 40.0 3E+02 0.0065 25.3 9.9 21 147-167 220-240 (334)
491 PF01475 FUR: Ferric uptake re 39.8 71 0.0015 23.9 4.8 43 425-467 14-56 (120)
492 PF03745 DUF309: Domain of unk 39.6 97 0.0021 20.0 4.6 12 432-443 13-24 (62)
493 PF02847 MA3: MA3 domain; Int 39.5 1.5E+02 0.0033 21.7 6.7 18 356-373 10-27 (113)
494 KOG1166 Mitotic checkpoint ser 39.5 1.9E+02 0.0041 30.9 8.9 75 394-468 89-164 (974)
495 KOG2471 TPR repeat-containing 39.3 3.7E+02 0.008 26.1 15.0 108 359-468 251-384 (696)
496 PF00244 14-3-3: 14-3-3 protei 39.1 2.6E+02 0.0055 24.2 9.5 58 283-341 7-65 (236)
497 cd07153 Fur_like Ferric uptake 39.0 91 0.002 23.1 5.2 45 320-364 7-51 (116)
498 PF10155 DUF2363: Uncharacteri 38.5 1.8E+02 0.0039 22.2 12.9 61 79-146 3-63 (126)
499 PRK10941 hypothetical protein; 38.0 2.9E+02 0.0062 24.5 10.1 61 207-271 184-244 (269)
500 COG5108 RPO41 Mitochondrial DN 38.0 2.3E+02 0.0051 28.5 8.6 91 318-411 33-131 (1117)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.3e-63 Score=498.71 Aligned_cols=397 Identities=14% Similarity=0.205 Sum_probs=246.8
Q ss_pred cCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHH
Q 038748 78 YSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITT 157 (482)
Q Consensus 78 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 157 (482)
.|++++|+++|++|....-..++...++.++..|.+.|.+++|+.+|+.|.. |+..+|+.+|.+|++.|+++.|.++
T Consensus 383 ~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~---pd~~Tyn~LL~a~~k~g~~e~A~~l 459 (1060)
T PLN03218 383 DGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN---PTLSTFNMLMSVCASSQDIDGALRV 459 (1060)
T ss_pred CcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC---CCHHHHHHHHHHHHhCcCHHHHHHH
Confidence 4566666666666655422345555556666666666666666666666554 5566666666666666666666666
Q ss_pred HHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCC
Q 038748 158 FDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDG-RIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGW 236 (482)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 236 (482)
|+.|.+.|+.||..+|+.||.+|++.|++++|.++|++|.. ++.||..+|+.+|.+|++.|++++|.++|++|... |+
T Consensus 460 f~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~-Gv 538 (1060)
T PLN03218 460 LRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSK-NV 538 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHc-CC
Confidence 66666666666666666666666666666666666666543 55666666666666666666666666666666543 56
Q ss_pred CCCChhhHHHHHHHHHccCCChHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHH
Q 038748 237 DPDNVPAYDSYLITLLKGCDGIYETVNSLKRMME--RGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTH 314 (482)
Q Consensus 237 ~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~--~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 314 (482)
.| +..+|+.++.++++. |++++|.++|++|.. .|+.||..+|+.+|.+|++.|++++|.++|+.|. +.|+.|+..
T Consensus 539 ~P-D~vTYnsLI~a~~k~-G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~-e~gi~p~~~ 615 (1060)
T PLN03218 539 KP-DRVVFNALISACGQS-GAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIH-EYNIKGTPE 615 (1060)
T ss_pred CC-CHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HcCCCCChH
Confidence 66 355666666666666 666666666666654 3556666666666666666666666666666663 556666666
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHh
Q 038748 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYM 394 (482)
Q Consensus 315 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 394 (482)
+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|+
T Consensus 616 tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~ 695 (1060)
T PLN03218 616 VYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACS 695 (1060)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred cCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccHHHHHH
Q 038748 395 DSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEE 474 (482)
Q Consensus 395 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 474 (482)
+.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..||..++.+|.+.|+.++|.+
T Consensus 696 k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~ 775 (1060)
T PLN03218 696 NAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLD 775 (1060)
T ss_pred hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHhh
Q 038748 475 LLKKCKA 481 (482)
Q Consensus 475 ~~~~m~~ 481 (482)
++++|.+
T Consensus 776 l~~~M~k 782 (1060)
T PLN03218 776 LLSQAKE 782 (1060)
T ss_pred HHHHHHH
Confidence 6666553
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.3e-62 Score=493.27 Aligned_cols=420 Identities=12% Similarity=0.172 Sum_probs=392.4
Q ss_pred HHHHhhhcCC-CCCHHHHHHHHHh--hcCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhc
Q 038748 54 VEDVLDKTLI-RVSQETVEQVLKF--SYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKE 130 (482)
Q Consensus 54 ~~~~l~~~~~-~~~~~~~~~ll~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 130 (482)
+...|...++ +++...+..++.. ..|..+.|+.+|+.|.. ||..+|+.+|.+|++.|+++.|.++|++|.+.
T Consensus 392 Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~-----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~ 466 (1060)
T PLN03218 392 LLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN-----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEA 466 (1060)
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC-----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHc
Confidence 6666777775 4555555666663 36889999999998764 99999999999999999999999999999999
Q ss_pred CC-CCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhC-CCCCCHHHHH
Q 038748 131 NV-LSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDG-RIKPDNDTYA 208 (482)
Q Consensus 131 ~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~ 208 (482)
|+ |+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. ++.||..+|+
T Consensus 467 Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYn 546 (1060)
T PLN03218 467 GLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFN 546 (1060)
T ss_pred CCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 97 899999999999999999999999999999999999999999999999999999999999999864 8999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHh-cCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 038748 209 ILLEGWEKERDVANAKKTFGEMVIE-VGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEEC 287 (482)
Q Consensus 209 ~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 287 (482)
.+|.+|++.|++++|.++|++|... .++.| +..+|++++.+|++. |++++|.++|++|.+.|+.|+..+|+.+|.+|
T Consensus 547 sLI~a~~k~G~~deA~~lf~eM~~~~~gi~P-D~vTynaLI~ay~k~-G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay 624 (1060)
T PLN03218 547 ALISACGQSGAVDRAFDVLAEMKAETHPIDP-DHITVGALMKACANA-GQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSC 624 (1060)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHcCCCCChHHHHHHHHHH
Confidence 9999999999999999999999753 47899 578999999999999 99999999999999999999999999999999
Q ss_pred HhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHH
Q 038748 288 LTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEA 367 (482)
Q Consensus 288 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 367 (482)
++.|++++|.++|++|. +.|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|
T Consensus 625 ~k~G~~deAl~lf~eM~-~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA 703 (1060)
T PLN03218 625 SQKGDWDFALSIYDDMK-KKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKA 703 (1060)
T ss_pred HhcCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHH
Confidence 99999999999999995 88999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 038748 368 SGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEK 447 (482)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 447 (482)
.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.
T Consensus 704 ~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~ 783 (1060)
T PLN03218 704 LELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKED 783 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHH----hc-------------------cHHHHHHHHHHHhh
Q 038748 448 GIQVTPFALSKLKQILIK----AR-------------------KEAVYEELLKKCKA 481 (482)
Q Consensus 448 ~~~~~~~~~~~l~~~~~~----~g-------------------~~~~a~~~~~~m~~ 481 (482)
|+.||..+|+.++..|.+ ++ ..++|..+|++|.+
T Consensus 784 Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~ 840 (1060)
T PLN03218 784 GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETIS 840 (1060)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHH
Confidence 999999999999876432 21 23678889998875
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.1e-59 Score=469.62 Aligned_cols=406 Identities=16% Similarity=0.116 Sum_probs=251.9
Q ss_pred HHHHhhhc-CCCCCHHHHHHHHHhh--cCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhc
Q 038748 54 VEDVLDKT-LIRVSQETVEQVLKFS--YSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKE 130 (482)
Q Consensus 54 ~~~~l~~~-~~~~~~~~~~~ll~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 130 (482)
+...|... +..|+..+|+.++..+ .++.+.|.+++..+... |..||..+||.++..|++.|+++.|.++|++|.+
T Consensus 109 ~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~-g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~- 186 (697)
T PLN03081 109 LFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESS-GFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE- 186 (697)
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh-CCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC-
Confidence 44445444 3678888888888833 56778888888877763 7888888888888888888888888888888865
Q ss_pred CCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhh-CCCCCCHHHHHH
Q 038748 131 NVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVD-GRIKPDNDTYAI 209 (482)
Q Consensus 131 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~~ 209 (482)
++..+|+.+|.+|++.|++++|.++|++|.+.|+.|+..+|+.++.+|++.|..+.+.+++..+. .+..||..+|+.
T Consensus 187 --~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~ 264 (697)
T PLN03081 187 --RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCA 264 (697)
T ss_pred --CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHH
Confidence 46677888888888888888888888888877777777766666666655555555555555533 355555555555
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 038748 210 LLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLT 289 (482)
Q Consensus 210 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 289 (482)
|+++|++.|++++|.++|++|.. + +..+|++++.+|++. |++++|+++|++|.+.|+.||..||+.++.+|++
T Consensus 265 Li~~y~k~g~~~~A~~vf~~m~~-----~-~~vt~n~li~~y~~~-g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~ 337 (697)
T PLN03081 265 LIDMYSKCGDIEDARCVFDGMPE-----K-TTVAWNSMLAGYALH-GYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSR 337 (697)
T ss_pred HHHHHHHCCCHHHHHHHHHhCCC-----C-ChhHHHHHHHHHHhC-CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 55555555555555555555532 1 445555555555555 5555555555555555555555555555555555
Q ss_pred cCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 038748 290 GQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASG 369 (482)
Q Consensus 290 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 369 (482)
.|++++|.+++..|. +.|+.||..+|++||.+|++.|++++|.++|++|.+ ||..+||.+|.+|++.|+.++|.+
T Consensus 338 ~g~~~~a~~i~~~m~-~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~ 412 (697)
T PLN03081 338 LALLEHAKQAHAGLI-RTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVE 412 (697)
T ss_pred ccchHHHHHHHHHHH-HhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHH
Confidence 555555555555553 455555555555555555555555555555555542 455555555555555555555555
Q ss_pred HHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHH-cCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 038748 370 LFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIE-NHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448 (482)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 448 (482)
+|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++.+|++.|++++|.+++++| +
T Consensus 413 lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~ 489 (697)
T PLN03081 413 MFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---P 489 (697)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---C
Confidence 555555555555555555555555555555555555555543 355555555555555555555555555555443 3
Q ss_pred CCCCHHHHHHHHHHHHHhccHHHHHHHHHH
Q 038748 449 IQVTPFALSKLKQILIKARKEAVYEELLKK 478 (482)
Q Consensus 449 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 478 (482)
+.|+..+|++|+.+|...|+.+.|..++++
T Consensus 490 ~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~ 519 (697)
T PLN03081 490 FKPTVNMWAALLTACRIHKNLELGRLAAEK 519 (697)
T ss_pred CCCCHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 444444444444444444444444444333
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.3e-58 Score=461.99 Aligned_cols=408 Identities=11% Similarity=0.069 Sum_probs=386.8
Q ss_pred HHHHhhhcCCCCCHHHHHHHHH--hhcCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcC
Q 038748 54 VEDVLDKTLIRVSQETVEQVLK--FSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKEN 131 (482)
Q Consensus 54 ~~~~l~~~~~~~~~~~~~~ll~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 131 (482)
+...+.+.|+.|+..+++.++. ...|+.+.|.++|+.|.. ||..+||.+|.+|++.|++++|+++|++|.+.|
T Consensus 145 l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~-----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g 219 (697)
T PLN03081 145 VYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE-----RNLASWGTIIGGLVDAGNYREAFALFREMWEDG 219 (697)
T ss_pred HHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC-----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhC
Confidence 5667778899999999999999 457999999999998865 899999999999999999999999999999999
Q ss_pred C-CCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHH
Q 038748 132 V-LSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAIL 210 (482)
Q Consensus 132 ~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 210 (482)
+ |+..+|+.++.+|++.|..+.+.+++..+.+.|+.||..+||.|+.+|++.|++++|.++|+.|. .+|..+|+.+
T Consensus 220 ~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~---~~~~vt~n~l 296 (697)
T PLN03081 220 SDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP---EKTTVAWNSM 296 (697)
T ss_pred CCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC---CCChhHHHHH
Confidence 7 89999999999999999999999999999999999999999999999999999999999999997 5799999999
Q ss_pred HHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 038748 211 LEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTG 290 (482)
Q Consensus 211 ~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 290 (482)
+.+|++.|++++|.++|++|.. .|+.| +..+|+.++.++++. |++++|.+++..|.+.|+.||..+|+.++.+|++.
T Consensus 297 i~~y~~~g~~~eA~~lf~~M~~-~g~~p-d~~t~~~ll~a~~~~-g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~ 373 (697)
T PLN03081 297 LAGYALHGYSEEALCLYYEMRD-SGVSI-DQFTFSIMIRIFSRL-ALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKW 373 (697)
T ss_pred HHHHHhCCCHHHHHHHHHHHHH-cCCCC-CHHHHHHHHHHHHhc-cchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHC
Confidence 9999999999999999999986 49999 578999999999999 99999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 038748 291 QNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGL 370 (482)
Q Consensus 291 g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~ 370 (482)
|++++|.++|++|. .||..+||+||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++
T Consensus 374 G~~~~A~~vf~~m~-----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~ 448 (697)
T PLN03081 374 GRMEDARNVFDRMP-----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEI 448 (697)
T ss_pred CCHHHHHHHHHhCC-----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHH
Confidence 99999999999995 4799999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHh-CCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 038748 371 FNEMVK-NENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449 (482)
Q Consensus 371 ~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 449 (482)
|+.|.+ .|+.|+..+|+.++++|++.|++++|.+++++| ++.|+..+|+.|+.+|...|+++.|..+++++.+.+
T Consensus 449 f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~- 524 (697)
T PLN03081 449 FQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMG- 524 (697)
T ss_pred HHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCC-
Confidence 999986 599999999999999999999999999998765 578999999999999999999999999999997544
Q ss_pred CC-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhC
Q 038748 450 QV-TPFALSKLKQILIKARKEAVYEELLKKCKAH 482 (482)
Q Consensus 450 ~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 482 (482)
| +..+|..+++.|.+.|++++|.+++++|++.
T Consensus 525 -p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 525 -PEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred -CCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 5 4679999999999999999999999999863
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.4e-58 Score=472.45 Aligned_cols=397 Identities=15% Similarity=0.118 Sum_probs=329.8
Q ss_pred HHHHHHHH--hhcCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCC-CCHHHHHHHHHH
Q 038748 68 ETVEQVLK--FSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASVFSS 144 (482)
Q Consensus 68 ~~~~~ll~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~li~~ 144 (482)
...+.++. ...|+.+.|.++|+.|.. ||..+||.+|.+|++.|++++|+++|++|...|+ |+..||+.++.+
T Consensus 122 ~~~n~li~~~~~~g~~~~A~~~f~~m~~-----~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~ 196 (857)
T PLN03077 122 RLGNAMLSMFVRFGELVHAWYVFGKMPE-----RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRT 196 (857)
T ss_pred hHHHHHHHHHHhCCChHHHHHHHhcCCC-----CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHH
Confidence 33344444 235667778888887654 7888899999999999999999999999988886 888888888888
Q ss_pred HHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 038748 145 YVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAK 224 (482)
Q Consensus 145 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 224 (482)
|+..+++..+.+++..|.+.|+.||..+||.|+.+|++.|+++.|..+|++|. .||..+||++|.+|++.|++++|+
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~---~~d~~s~n~li~~~~~~g~~~eAl 273 (857)
T PLN03077 197 CGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP---RRDCISWNAMISGYFENGECLEGL 273 (857)
T ss_pred hCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC---CCCcchhHHHHHHHHhCCCHHHHH
Confidence 88888888888888888888888899999999999999999999999999987 578999999999999999999999
Q ss_pred HHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 038748 225 KTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMV 304 (482)
Q Consensus 225 ~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 304 (482)
++|++|.. .|+.| +..+|+.++.++... |+.+.+.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|++|.
T Consensus 274 ~lf~~M~~-~g~~P-d~~ty~~ll~a~~~~-g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~ 350 (857)
T PLN03077 274 ELFFTMRE-LSVDP-DLMTITSVISACELL-GDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME 350 (857)
T ss_pred HHHHHHHH-cCCCC-ChhHHHHHHHHHHhc-CChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC
Confidence 99999986 48999 578999999999999 9999999999999999999999999999999999999999999999985
Q ss_pred cccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChh
Q 038748 305 GRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHE 384 (482)
Q Consensus 305 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 384 (482)
.||..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++++.|.+.|+.|+..
T Consensus 351 -----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~ 425 (857)
T PLN03077 351 -----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVV 425 (857)
T ss_pred -----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchH
Confidence 478888999999999999999999999999998988998888888888888888888888888888887777777
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHc------------------------------CC--------------------
Q 038748 385 NCRAAVRVYMDSDDPYVAIKFWKYMIEN------------------------------HC-------------------- 414 (482)
Q Consensus 385 ~~~~li~~~~~~~~~~~a~~~~~~m~~~------------------------------~~-------------------- 414 (482)
+|+.||.+|++.|++++|.++|++|.+. ++
T Consensus 426 ~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l 505 (857)
T PLN03077 426 VANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGAL 505 (857)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchH
Confidence 7777777777777766666666554321 11
Q ss_pred ---------------------------------------------CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 038748 415 ---------------------------------------------SDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449 (482)
Q Consensus 415 ---------------------------------------------~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 449 (482)
.||..+||++|.+|++.|+.++|+++|++|.+.|+
T Consensus 506 ~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~ 585 (857)
T PLN03077 506 MCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGV 585 (857)
T ss_pred HHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 34455677777777777777777778888877777
Q ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHh
Q 038748 450 QVTPFALSKLKQILIKARKEAVYEELLKKCK 480 (482)
Q Consensus 450 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 480 (482)
.||..||..++.+|.+.|++++|.++|++|+
T Consensus 586 ~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~ 616 (857)
T PLN03077 586 NPDEVTFISLLCACSRSGMVTQGLEYFHSME 616 (857)
T ss_pred CCCcccHHHHHHHHhhcChHHHHHHHHHHHH
Confidence 7888888888888877888888888777776
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=4.6e-58 Score=468.77 Aligned_cols=414 Identities=14% Similarity=0.087 Sum_probs=268.4
Q ss_pred HHHHhhhcCCCCCHHHHHHHHHhh--cCCchhHhHHhhhhhcCCCCCC-------------------------------C
Q 038748 54 VEDVLDKTLIRVSQETVEQVLKFS--YSHPGPAVKFFRWSAYQLNDKH-------------------------------S 100 (482)
Q Consensus 54 ~~~~l~~~~~~~~~~~~~~ll~~~--~~~~~~a~~~~~~~~~~~~~~~-------------------------------~ 100 (482)
+...|...|+.|+..+|+.+|+.+ .++...+.+++..+.+ .|..| |
T Consensus 174 ~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d 252 (857)
T PLN03077 174 LYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVR-FGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRD 252 (857)
T ss_pred HHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHH-cCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCC
Confidence 667777788888888888777743 2334444444444443 24444 4
Q ss_pred HhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHH
Q 038748 101 PYAWNLVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSA 179 (482)
Q Consensus 101 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 179 (482)
..+||.+|.+|++.|++++|+++|++|...|+ |+..+|+.++.+|++.|+++.|.+++..|.+.|+.||..+||.|+.+
T Consensus 253 ~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~ 332 (857)
T PLN03077 253 CISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQM 332 (857)
T ss_pred cchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHH
Confidence 45555555555555555555555555555543 45555555555555555555555555555555555555555555555
Q ss_pred HHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChH
Q 038748 180 ICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIY 259 (482)
Q Consensus 180 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~ 259 (482)
|++.|++++|.++|++|. .||..+|+.+|.+|++.|++++|+++|++|... |+.| +..+|+.++.++++. |+++
T Consensus 333 y~k~g~~~~A~~vf~~m~---~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~-g~~P-d~~t~~~ll~a~~~~-g~~~ 406 (857)
T PLN03077 333 YLSLGSWGEAEKVFSRME---TKDAVSWTAMISGYEKNGLPDKALETYALMEQD-NVSP-DEITIASVLSACACL-GDLD 406 (857)
T ss_pred HHhcCCHHHHHHHHhhCC---CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHh-CCCC-CceeHHHHHHHHhcc-chHH
Confidence 555555555555555554 345555555555555555555555555555432 5555 244555555555555 5555
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038748 260 ETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEM 339 (482)
Q Consensus 260 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 339 (482)
++.++++.|.+.|+.|+..+|+.++.+|++.|++++|.++|++|. .+|..+|+++|.+|++.|+.++|+.+|++|
T Consensus 407 ~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~-----~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m 481 (857)
T PLN03077 407 VGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP-----EKDVISWTSIIAGLRLNNRCFEALIFFRQM 481 (857)
T ss_pred HHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC-----CCCeeeHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 555555555555555555555555555555555555555555553 234555555555555555555566666666
Q ss_pred HHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC------------------------------ccChhhHHHH
Q 038748 340 VYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNEN------------------------------VLNHENCRAA 389 (482)
Q Consensus 340 ~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~------------------------------~~~~~~~~~l 389 (482)
.+ ++.||..||+.++.+|++.|+++.+.+++..+.+.|+ .+|..+|+++
T Consensus 482 ~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~l 560 (857)
T PLN03077 482 LL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNIL 560 (857)
T ss_pred Hh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHH
Confidence 54 3666666666666555555555555555554444443 4567778889
Q ss_pred HHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHHhcc
Q 038748 390 VRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMA-EKGIQVTPFALSKLKQILIKARK 468 (482)
Q Consensus 390 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~~~~~~~~~~~~l~~~~~~~g~ 468 (482)
|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|++|. +.|+.|+..+|+.++.+|.+.|+
T Consensus 561 I~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~ 640 (857)
T PLN03077 561 LTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGK 640 (857)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999998 78999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 038748 469 EAVYEELLKKCK 480 (482)
Q Consensus 469 ~~~a~~~~~~m~ 480 (482)
+++|.+++++|.
T Consensus 641 ~~eA~~~~~~m~ 652 (857)
T PLN03077 641 LTEAYNFINKMP 652 (857)
T ss_pred HHHHHHHHHHCC
Confidence 999999999983
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=1.8e-26 Score=241.36 Aligned_cols=390 Identities=14% Similarity=0.067 Sum_probs=312.2
Q ss_pred hhcCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHH
Q 038748 76 FSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAI 155 (482)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 155 (482)
...|+++.|.+.|+.+.. ..+.+..++..+...+.+.|++++|..+|+++...++.+...+..++..+...|++++|.
T Consensus 510 ~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 587 (899)
T TIGR02917 510 IQEGNPDDAIQRFEKVLT--IDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKAL 587 (899)
T ss_pred HHCCCHHHHHHHHHHHHH--hCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHH
Confidence 346777778888777665 344567777778888888888888888888887777767777777888888888888888
Q ss_pred HHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcC
Q 038748 156 TTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVG 235 (482)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 235 (482)
.+++.+.+.. +.+...|..+..++...|++++|...|+.+....+.+...+..+..++.+.|++++|..+|+++..
T Consensus 588 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--- 663 (899)
T TIGR02917 588 AILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALE--- 663 (899)
T ss_pred HHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh---
Confidence 8888887643 346677888888888888888888888887655566777788888888888888888888888763
Q ss_pred CCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHH
Q 038748 236 WDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHM 315 (482)
Q Consensus 236 ~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 315 (482)
..|++..++..+...+... |++++|.++++.+.+.+ +.+...+..+...+...|++++|.+.|..+. .. .|+..+
T Consensus 664 ~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~-~~--~~~~~~ 738 (899)
T TIGR02917 664 LKPDNTEAQIGLAQLLLAA-KRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKAL-KR--APSSQN 738 (899)
T ss_pred cCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHH-hh--CCCchH
Confidence 4676777888888888888 88888888888887764 4466677778888888899999988888886 22 455577
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhc
Q 038748 316 YNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMD 395 (482)
Q Consensus 316 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 395 (482)
+..+..++...|++++|.+.++.+.+.. +.+...+..+...|...|++++|..+|+++.+... .+...++.+...+..
T Consensus 739 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~ 816 (899)
T TIGR02917 739 AIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAP-DNAVVLNNLAWLYLE 816 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHh
Confidence 7778888888999999999888888763 34677788888888889999999999999988754 367788888999999
Q ss_pred CCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccHHHHHHH
Q 038748 396 SDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEEL 475 (482)
Q Consensus 396 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 475 (482)
.|+ .+|+++++.+.+.. +-+..++..+...+...|++++|.++|+++.+.+.. ++.++..+..++.+.|++++|.++
T Consensus 817 ~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~ 893 (899)
T TIGR02917 817 LKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGRKAEARKE 893 (899)
T ss_pred cCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHHHH
Confidence 999 78999999888753 234467778888899999999999999999998754 889999999999999999999999
Q ss_pred HHHHhh
Q 038748 476 LKKCKA 481 (482)
Q Consensus 476 ~~~m~~ 481 (482)
+++|.+
T Consensus 894 ~~~~~~ 899 (899)
T TIGR02917 894 LDKLLN 899 (899)
T ss_pred HHHHhC
Confidence 999864
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=4.4e-25 Score=230.98 Aligned_cols=388 Identities=15% Similarity=0.097 Sum_probs=242.6
Q ss_pred cCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHH
Q 038748 78 YSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITT 157 (482)
Q Consensus 78 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 157 (482)
.|+.+.|.+.|+.+.. ..+.+...+..+...+...|++++|.+.|+++...++.+..++..+...+.+.|++++|..+
T Consensus 478 ~~~~~~A~~~~~~a~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 555 (899)
T TIGR02917 478 KGDLAKAREAFEKALS--IEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAW 555 (899)
T ss_pred CCCHHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4555555555555443 22334445555555555555555565555555555555555555556666666666666666
Q ss_pred HHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCC
Q 038748 158 FDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWD 237 (482)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 237 (482)
++++.+.+. .+...+..+...+...|++++|.++++.+....+.+..+|..+..+|...|++++|...|+.+.. ..
T Consensus 556 ~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~ 631 (899)
T TIGR02917 556 LEKAAELNP-QEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLA---LQ 631 (899)
T ss_pred HHHHHHhCc-cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hC
Confidence 666555432 24445555666666666666666666665555555666666666666666666666666666653 24
Q ss_pred CCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHH
Q 038748 238 PDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYN 317 (482)
Q Consensus 238 p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 317 (482)
|++...+..+...+... |++++|...++++.+.. +.+..++..+...+...|++++|.++++.+. ... +.+...+.
T Consensus 632 ~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~-~~~~~~~~ 707 (899)
T TIGR02917 632 PDSALALLLLADAYAVM-KNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQ-KQH-PKAALGFE 707 (899)
T ss_pred CCChHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hhC-cCChHHHH
Confidence 54555666666666666 66666666666666542 2345566666666666677777777766664 222 34555666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCC
Q 038748 318 MMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSD 397 (482)
Q Consensus 318 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 397 (482)
.+...+...|++++|.+.|+.+.+.+ |+..++..+..++.+.|++++|.+.++.+.+... .+...+..+...|...|
T Consensus 708 ~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~g 784 (899)
T TIGR02917 708 LEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHP-NDAVLRTALAELYLAQK 784 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCc
Confidence 66666777777777777777766643 3445566666777777777777777777766543 25666677777777777
Q ss_pred ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccHHHHHHHHH
Q 038748 398 DPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLK 477 (482)
Q Consensus 398 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 477 (482)
++++|.+.|+.+.+.. +.+...++.+...+...|+ .+|+.+++++.+... -++.++..+..++...|++++|.++++
T Consensus 785 ~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~ 861 (899)
T TIGR02917 785 DYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAP-NIPAILDTLGWLLVEKGEADRALPLLR 861 (899)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7777777777777654 3455667777777777777 667777777765532 344566677777788888888888887
Q ss_pred HHhh
Q 038748 478 KCKA 481 (482)
Q Consensus 478 ~m~~ 481 (482)
++.+
T Consensus 862 ~a~~ 865 (899)
T TIGR02917 862 KAVN 865 (899)
T ss_pred HHHh
Confidence 7764
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.92 E-value=1.8e-21 Score=183.01 Aligned_cols=302 Identities=12% Similarity=0.039 Sum_probs=176.8
Q ss_pred HHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCC---HhhHHHHHHHHHhcCC
Q 038748 109 DLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHD---VFALNSLLSAICRDGK 185 (482)
Q Consensus 109 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~g~ 185 (482)
..+...|++++|+..|.++.+.++.+..++..+...+...|++++|..+++.+...+..++ ..++..+...|.+.|+
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 3445667788888888888887776777778888888888888888888887776432221 2456677777777788
Q ss_pred hHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCC---hhhHHHHHHHHHccCCChHHHH
Q 038748 186 TIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDN---VPAYDSYLITLLKGCDGIYETV 262 (482)
Q Consensus 186 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~---~~~~~~l~~~~~~~~~~~~~a~ 262 (482)
+++|..+|+++....+.+..++..++..+.+.|++++|.+.++.+... +-.+.. ...+..+...+... |++++|.
T Consensus 123 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~la~~~~~~-~~~~~A~ 200 (389)
T PRK11788 123 LDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKL-GGDSLRVEIAHFYCELAQQALAR-GDLDAAR 200 (389)
T ss_pred HHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHh-cCCcchHHHHHHHHHHHHHHHhC-CCHHHHH
Confidence 888887777766555556677777777777777887777777777643 111111 11233344444555 6666666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 038748 263 NSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYN 342 (482)
Q Consensus 263 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 342 (482)
+.|+++.+.. +.+...+..+...+.+.|++++|.++++++. ..+......+++.++.+|...|++++|...++++.+.
T Consensus 201 ~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~-~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 201 ALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVE-EQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6666655532 2223444555555555666666666666554 2111111234455555555555555555555555553
Q ss_pred CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhc---CCChHHHHHHHHHHHHcCCCCCh
Q 038748 343 GAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMD---SDDPYVAIKFWKYMIENHCSDLS 418 (482)
Q Consensus 343 g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~~~~p~~ 418 (482)
.|+...+..+...+.+.|++++|..+++++.+. .|+...++.++..+.. .|+.+++..+++.|.+.++.|+.
T Consensus 279 --~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 279 --YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred --CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 234444455555555555555555555555543 3455555555544442 33555555555555554444443
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.92 E-value=1.7e-21 Score=183.18 Aligned_cols=317 Identities=15% Similarity=0.086 Sum_probs=261.5
Q ss_pred HHhhhcCCCCCHHHHHHHHHhhcCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCC-
Q 038748 56 DVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLS- 134 (482)
Q Consensus 56 ~~l~~~~~~~~~~~~~~ll~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~- 134 (482)
+..++.........+..+.....|+++.|...|..+.. ..+.+..++..+...+...|++++|..+++.+...+..+
T Consensus 26 ~~~~~~~~~~~~~y~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~ 103 (389)
T PRK11788 26 QDQQKESNRLSRDYFKGLNFLLNEQPDKAIDLFIEMLK--VDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTR 103 (389)
T ss_pred hhhhhhhhhccHHHHHHHHHHhcCChHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCH
Confidence 33444444555656666666778999999999999887 445567889999999999999999999999998865322
Q ss_pred ---HHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCC-----HHH
Q 038748 135 ---LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPD-----NDT 206 (482)
Q Consensus 135 ---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~ 206 (482)
..++..+...|...|++++|..+|+++.+.. ..+..+++.++..+...|++++|.+.++.+....+.+ ...
T Consensus 104 ~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 182 (389)
T PRK11788 104 EQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHF 182 (389)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 3568889999999999999999999998763 3467889999999999999999999999976532222 224
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 038748 207 YAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEE 286 (482)
Q Consensus 207 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 286 (482)
+..+...+.+.|++++|...|+++.+ ..|++...+..+...+... |++++|.+.++++...+......++..++.+
T Consensus 183 ~~~la~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~ 258 (389)
T PRK11788 183 YCELAQQALARGDLDAARALLKKALA---ADPQCVRASILLGDLALAQ-GDYAAAIEALERVEEQDPEYLSEVLPKLMEC 258 (389)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHh---HCcCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHChhhHHHHHHHHHHH
Confidence 56778888999999999999999974 3676777888888999999 9999999999999876433335668889999
Q ss_pred HHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh---cCC
Q 038748 287 CLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVK---GRK 363 (482)
Q Consensus 287 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~---~g~ 363 (482)
|...|++++|...++.+. +. .|+...+..++..+.+.|++++|..+++++.+. .|+..+++.++..+.. .|+
T Consensus 259 ~~~~g~~~~A~~~l~~~~-~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~ 333 (389)
T PRK11788 259 YQALGDEAEGLEFLRRAL-EE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGR 333 (389)
T ss_pred HHHcCCHHHHHHHHHHHH-Hh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCcc
Confidence 999999999999999996 32 567777788999999999999999999998875 6899999988887765 568
Q ss_pred HHHHHHHHHHHHhCCCccChh
Q 038748 364 LWEASGLFNEMVKNENVLNHE 384 (482)
Q Consensus 364 ~~~a~~~~~~~~~~~~~~~~~ 384 (482)
.+++..+++.+.+.++.|++.
T Consensus 334 ~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 334 AKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred chhHHHHHHHHHHHHHhCCCC
Confidence 999999999999887777765
No 11
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.90 E-value=8.5e-19 Score=184.67 Aligned_cols=388 Identities=10% Similarity=0.001 Sum_probs=266.6
Q ss_pred hhcCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCC--HHHHH------------HH
Q 038748 76 FSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLS--LATFA------------SV 141 (482)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~------------~l 141 (482)
...|++++|+..|+.... ..+.+...+..+...+.+.|++++|+..|++..+..+.+ ...|. ..
T Consensus 280 ~~~g~~~~A~~~l~~aL~--~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~ 357 (1157)
T PRK11447 280 VDSGQGGKAIPELQQAVR--ANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQ 357 (1157)
T ss_pred HHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHH
Confidence 346888899999988776 444577888888899999999999999999888766522 11121 22
Q ss_pred HHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHH--------
Q 038748 142 FSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEG-------- 213 (482)
Q Consensus 142 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~-------- 213 (482)
...+.+.|++++|...|++..+... .+...+..+..++...|++++|++.|++.....+.+...+..+...
T Consensus 358 g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~ 436 (1157)
T PRK11447 358 GDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEK 436 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHH
Confidence 3456778899999999998888643 3566677788888888999999998888665444444444444333
Q ss_pred ----------------------------------HHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChH
Q 038748 214 ----------------------------------WEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIY 259 (482)
Q Consensus 214 ----------------------------------~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~ 259 (482)
+...|++++|.+.|++..+ ..|++...+..+...+... |+++
T Consensus 437 A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~---~~P~~~~~~~~LA~~~~~~-G~~~ 512 (1157)
T PRK11447 437 ALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLA---LDPGSVWLTYRLAQDLRQA-GQRS 512 (1157)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHc-CCHH
Confidence 3345666666666666542 3555555555666666666 6666
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCH---------HHHHHHHHHHHhcCCHH
Q 038748 260 ETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDT---------HMYNMMISLYCYSNETG 330 (482)
Q Consensus 260 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---------~~~~~li~~~~~~~~~~ 330 (482)
+|...++++.+.. +.+...+..+...+...++.++|...++.+. .....++. ..+..+...+...|+.+
T Consensus 513 ~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~-~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~ 590 (1157)
T PRK11447 513 QADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLP-RAQWNSNIQELAQRLQSDQVLETANRLRDSGKEA 590 (1157)
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCC-chhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHH
Confidence 6666666665432 1223333333334455666666666666553 11111111 11223445566777888
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHH
Q 038748 331 AAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMI 410 (482)
Q Consensus 331 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 410 (482)
+|..+++. .+.+...+..+...+.+.|++++|...|+...+.... +...+..++..|...|++++|.+.++.+.
T Consensus 591 eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~~l~~ll 664 (1157)
T PRK11447 591 EAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQGDLAAARAQLAKLP 664 (1157)
T ss_pred HHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 88777762 2345556677888899999999999999999987543 67788899999999999999999999887
Q ss_pred HcCCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC--C---CHHHHHHHHHHHHHhccHHHHHHHHHHHh
Q 038748 411 ENHCSDL-SETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQ--V---TPFALSKLKQILIKARKEAVYEELLKKCK 480 (482)
Q Consensus 411 ~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 480 (482)
+. .|+ ...+..+..++...|++++|.++++++...... | +...+..+...+...|++++|++.+++..
T Consensus 665 ~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 665 AT--ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred cc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 64 343 456677788888999999999999998765422 2 22466667888999999999999998764
No 12
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.90 E-value=5.2e-19 Score=174.35 Aligned_cols=325 Identities=11% Similarity=0.045 Sum_probs=223.7
Q ss_pred hhcCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHH
Q 038748 76 FSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAI 155 (482)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 155 (482)
...|+++.|+.++..+.. ..+-+...+..++......|+++.|...|+++....+.+...+..+...+...|++++|.
T Consensus 53 ~~~g~~~~A~~l~~~~l~--~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai 130 (656)
T PRK15174 53 LRKDETDVGLTLLSDRVL--TAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVA 130 (656)
T ss_pred HhcCCcchhHHHhHHHHH--hCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHH
Confidence 456888888888887666 333445555566666667888888888888888887777777888888888888888888
Q ss_pred HHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcC
Q 038748 156 TTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVG 235 (482)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 235 (482)
..++...+.. +.+...+..+...+...|++++|...++.+....+.+...+..+. .+...|++++|...++.+...
T Consensus 131 ~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~-- 206 (656)
T PRK15174 131 DLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLARALLPF-- 206 (656)
T ss_pred HHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhc--
Confidence 8888887753 234566777778888888888888888776443334444444433 467778888888888877642
Q ss_pred CCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhH----HHHHHHHhhcccCCCC
Q 038748 236 WDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRG----AEFIWGAMVGRIGFRP 311 (482)
Q Consensus 236 ~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~----a~~~~~~~~~~~~~~~ 311 (482)
..+++...+..+...+... |++++|++.++++.... +.+...+..+...+...|++++ |...|+..++.. +.
T Consensus 207 ~~~~~~~~~~~l~~~l~~~-g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~--P~ 282 (656)
T PRK15174 207 FALERQESAGLAVDTLCAV-GKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN--SD 282 (656)
T ss_pred CCCcchhHHHHHHHHHHHC-CCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC--CC
Confidence 1112233334445566666 88888888888877654 3346666777778888888775 677787776221 23
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHH
Q 038748 312 DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVR 391 (482)
Q Consensus 312 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 391 (482)
+...+..+...+...|++++|...+++..+.... +...+..+..++.+.|++++|...++.+.+.+.. +...+..+..
T Consensus 283 ~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~-~~~~~~~~a~ 360 (656)
T PRK15174 283 NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREKGV-TSKWNRYAAA 360 (656)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-chHHHHHHHH
Confidence 4667777788888888888888888887775322 3445666677778888888888888887765322 2223334456
Q ss_pred HHhcCCChHHHHHHHHHHHHc
Q 038748 392 VYMDSDDPYVAIKFWKYMIEN 412 (482)
Q Consensus 392 ~~~~~~~~~~a~~~~~~m~~~ 412 (482)
++...|++++|.+.|+...+.
T Consensus 361 al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 361 ALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHHh
Confidence 677888888888888887764
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.89 E-value=2.6e-18 Score=170.07 Aligned_cols=394 Identities=11% Similarity=-0.023 Sum_probs=275.8
Q ss_pred hhcCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHH
Q 038748 76 FSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAI 155 (482)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 155 (482)
...|+++.|+..|..... ..|+...|..+..+|.+.|++++|++.++...+.++.+..+|..+..+|...|++++|+
T Consensus 138 ~~~~~~~~Ai~~y~~al~---~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~ 214 (615)
T TIGR00990 138 YRNKDFNKAIKLYSKAIE---CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADAL 214 (615)
T ss_pred HHcCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 346899999999998765 34678889999999999999999999999999988888889999999999999999999
Q ss_pred HHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCC----------------------------CCCC-HHH
Q 038748 156 TTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR----------------------------IKPD-NDT 206 (482)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----------------------------~~~~-~~~ 206 (482)
.-|......+...+.. ...++..+........+...++.-... ..++ ...
T Consensus 215 ~~~~~~~~~~~~~~~~-~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (615)
T TIGR00990 215 LDLTASCIIDGFRNEQ-SAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNG 293 (615)
T ss_pred HHHHHHHHhCCCccHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccc
Confidence 8887665432111111 111111111100011111111100000 0000 000
Q ss_pred HHHHHHH---HHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 038748 207 YAILLEG---WEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLA 283 (482)
Q Consensus 207 ~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 283 (482)
+..+... ....+++++|.+.|+.........|.....+..+...+... |++++|+..|++..... +-....|..+
T Consensus 294 ~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~-g~~~eA~~~~~kal~l~-P~~~~~~~~l 371 (615)
T TIGR00990 294 QLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLK-GKHLEALADLSKSIELD-PRVTQSYIKR 371 (615)
T ss_pred hHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcC-CCcHHHHHHH
Confidence 1111100 12246788999999888754334566667788888888888 99999999999888753 2235577788
Q ss_pred HHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 038748 284 FEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRK 363 (482)
Q Consensus 284 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 363 (482)
...+...|++++|...|+.+++.. +.+..+|..+...+...|++++|...|++..+... .+...+..+...+.+.|+
T Consensus 372 a~~~~~~g~~~eA~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P-~~~~~~~~la~~~~~~g~ 448 (615)
T TIGR00990 372 ASMNLELGDPDKAEEDFDKALKLN--SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP-DFIFSHIQLGVTQYKEGS 448 (615)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc-cCHHHHHHHHHHHHHCCC
Confidence 888889999999999999887332 33567888888889999999999999999887532 245667777788888999
Q ss_pred HHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChh------hHHHHHHHHHhcCChhHH
Q 038748 364 LWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSE------TGNLLVAGLCDMHMLPEA 437 (482)
Q Consensus 364 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~------~~~~li~~~~~~g~~~~A 437 (482)
+++|...|+..++... .+...++.+..++...|++++|.+.|+...+.....+.. .++.....+...|++++|
T Consensus 449 ~~eA~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA 527 (615)
T TIGR00990 449 IASSMATFRRCKKNFP-EAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEA 527 (615)
T ss_pred HHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHH
Confidence 9999999999887542 256778888899999999999999999988643211111 112222233446899999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHh
Q 038748 438 VKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKCK 480 (482)
Q Consensus 438 ~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 480 (482)
.+++++....+. .+...+..+...+.+.|++++|++++++..
T Consensus 528 ~~~~~kAl~l~p-~~~~a~~~la~~~~~~g~~~eAi~~~e~A~ 569 (615)
T TIGR00990 528 ENLCEKALIIDP-ECDIAVATMAQLLLQQGDVDEALKLFERAA 569 (615)
T ss_pred HHHHHHHHhcCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 999998877652 344578888999999999999999988764
No 14
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.89 E-value=5.6e-18 Score=178.54 Aligned_cols=356 Identities=9% Similarity=-0.030 Sum_probs=227.7
Q ss_pred HHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCC-CHhhHH------------HH
Q 038748 110 LLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKH-DVFALN------------SL 176 (482)
Q Consensus 110 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~------------~l 176 (482)
.+...|++++|+..|++..+..+.+..++..+..++.+.|++++|+..|++..+..... ....|. .+
T Consensus 278 ~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~ 357 (1157)
T PRK11447 278 AAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQ 357 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHH
Confidence 44556778888888888777776677777777788888888888888887777643221 111111 12
Q ss_pred HHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCC
Q 038748 177 LSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD 256 (482)
Q Consensus 177 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 256 (482)
...+.+.|++++|...|++.....+.+...+..+..++...|++++|++.|++..+ ..|++..++..+...+. . +
T Consensus 358 g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~---~~p~~~~a~~~L~~l~~-~-~ 432 (1157)
T PRK11447 358 GDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALR---MDPGNTNAVRGLANLYR-Q-Q 432 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHH-h-c
Confidence 33456777888888888776655556667777777788888888888888877763 35655555554444432 2 3
Q ss_pred ChHHHHHHHHHHHHcCCC--------CCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCC-CHHHHHHHHHHHHhcC
Q 038748 257 GIYETVNSLKRMMERGCN--------PGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRP-DTHMYNMMISLYCYSN 327 (482)
Q Consensus 257 ~~~~a~~~~~~m~~~~~~--------~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~ 327 (482)
+.++|+.+++.+...... .....+..+...+...|++++|.+.|++.++. .| +...+..+...|.+.|
T Consensus 433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~---~P~~~~~~~~LA~~~~~~G 509 (1157)
T PRK11447 433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL---DPGSVWLTYRLAQDLRQAG 509 (1157)
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcC
Confidence 445554444432211000 00112233344455566666666666666522 23 3445555666666666
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHH--------------------------------------------HHHHHHHhcCC
Q 038748 328 ETGAAMKLLDEMVYNGAFPDIQTYN--------------------------------------------ILFEFLVKGRK 363 (482)
Q Consensus 328 ~~~~a~~~~~~m~~~g~~p~~~~~~--------------------------------------------~ll~~~~~~g~ 363 (482)
++++|...++++.+.... +...+. .....+...|+
T Consensus 510 ~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~ 588 (1157)
T PRK11447 510 QRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGK 588 (1157)
T ss_pred CHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCC
Confidence 666666666666553211 222222 22334455566
Q ss_pred HHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 038748 364 LWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKG 443 (482)
Q Consensus 364 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 443 (482)
.++|..+++. ...+...+..+...+.+.|++++|++.|+...+.. +.+...+..++..|...|++++|++.++.
T Consensus 589 ~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ 662 (1157)
T PRK11447 589 EAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAK 662 (1157)
T ss_pred HHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 6666655551 22345566778888999999999999999999854 23557888899999999999999999998
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHhh
Q 038748 444 MAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKCKA 481 (482)
Q Consensus 444 m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 481 (482)
..+.. +.+...+..+..++.+.|++++|.++++++.+
T Consensus 663 ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 699 (1157)
T PRK11447 663 LPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIP 699 (1157)
T ss_pred HhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 87653 23456677788889999999999999998754
No 15
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.88 E-value=1.8e-18 Score=170.66 Aligned_cols=368 Identities=8% Similarity=-0.030 Sum_probs=291.0
Q ss_pred cCCchhHhHHhhhhhcCC-CCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHH
Q 038748 78 YSHPGPAVKFFRWSAYQL-NDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAIT 156 (482)
Q Consensus 78 ~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 156 (482)
..+|+.-.-.|....... ....+..-.-.++..+.+.|++++|..+++......+.+...+..++.+....|++++|..
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~ 97 (656)
T PRK15174 18 QEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQ 97 (656)
T ss_pred hhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHH
Confidence 456666666666444321 1223344566777888899999999999999999988777788888888889999999999
Q ss_pred HHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCC
Q 038748 157 TFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGW 236 (482)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 236 (482)
.|+.+.+... .+...+..+...+...|++++|...++......+.+...+..+..++...|++++|...++.+.. .
T Consensus 98 ~l~~~l~~~P-~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~---~ 173 (656)
T PRK15174 98 VVNKLLAVNV-CQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQ---E 173 (656)
T ss_pred HHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH---h
Confidence 9999998653 35677888889999999999999999997765677788999999999999999999999998864 3
Q ss_pred CCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHH
Q 038748 237 DPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMY 316 (482)
Q Consensus 237 ~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 316 (482)
.|++...+..+. .+... |++++|...++.+.+....++...+..+..++...|++++|...+..+.+. . +.+...+
T Consensus 174 ~P~~~~a~~~~~-~l~~~-g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~-~-p~~~~~~ 249 (656)
T PRK15174 174 VPPRGDMIATCL-SFLNK-SRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR-G-LDGAALR 249 (656)
T ss_pred CCCCHHHHHHHH-HHHHc-CCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc-C-CCCHHHH
Confidence 565555555543 46777 999999999999887653344555566678889999999999999999733 2 3457788
Q ss_pred HHHHHHHHhcCCHHH----HHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHH
Q 038748 317 NMMISLYCYSNETGA----AMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRV 392 (482)
Q Consensus 317 ~~li~~~~~~~~~~~----a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 392 (482)
..+...|...|++++ |...|++..+... .+...+..+...+...|++++|...+++..+.... +...+..+..+
T Consensus 250 ~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~ 327 (656)
T PRK15174 250 RSLGLAYYQSGRSREAKLQAAEHWRHALQFNS-DNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARA 327 (656)
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 889999999999986 8999999988632 25667888899999999999999999999986543 45667788899
Q ss_pred HhcCCChHHHHHHHHHHHHcCCCCChhh-HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHH
Q 038748 393 YMDSDDPYVAIKFWKYMIENHCSDLSET-GNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALS 457 (482)
Q Consensus 393 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 457 (482)
|.+.|++++|.+.++.+.+.+ |+... +..+..++...|++++|...|++..+....-....|.
T Consensus 328 l~~~G~~~eA~~~l~~al~~~--P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~~~~ 391 (656)
T PRK15174 328 LRQVGQYTAASDEFVQLAREK--GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQSFE 391 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhchhhHH
Confidence 999999999999999998753 55433 4445677899999999999999998765332233443
No 16
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.88 E-value=1e-17 Score=168.82 Aligned_cols=409 Identities=11% Similarity=-0.004 Sum_probs=307.6
Q ss_pred CCCCCHHHHHHHHH--hhcCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHH
Q 038748 62 LIRVSQETVEQVLK--FSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFA 139 (482)
Q Consensus 62 ~~~~~~~~~~~ll~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 139 (482)
..+.++..+...+. .-.|+.++|++++..... ..+.+...+..+...+...|++++|.++|++..+..+.+...+.
T Consensus 10 ~~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~--~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~ 87 (765)
T PRK10049 10 KSALSNNQIADWLQIALWAGQDAEVITVYNRYRV--HMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQR 87 (765)
T ss_pred ccCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 34677777777777 447999999999987764 34556667999999999999999999999999999888888888
Q ss_pred HHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 038748 140 SVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERD 219 (482)
Q Consensus 140 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 219 (482)
.+...+...|++++|+..+++..+... .+.. +..+..++...|+.++|+..++++....+.+...+..+..++...|.
T Consensus 88 ~la~~l~~~g~~~eA~~~l~~~l~~~P-~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~ 165 (765)
T PRK10049 88 GLILTLADAGQYDEALVKAKQLVSGAP-DKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRL 165 (765)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 999999999999999999999988642 3555 88888899999999999999999887667788888888889999999
Q ss_pred HHHHHHHHHHhHHhcCCCCCC-----hhhHHHHHHHHHccC----CCh---HHHHHHHHHHHHc-CCCCCHH-HHH----
Q 038748 220 VANAKKTFGEMVIEVGWDPDN-----VPAYDSYLITLLKGC----DGI---YETVNSLKRMMER-GCNPGMT-FFK---- 281 (482)
Q Consensus 220 ~~~a~~~~~~~~~~~~~~p~~-----~~~~~~l~~~~~~~~----~~~---~~a~~~~~~m~~~-~~~~~~~-~~~---- 281 (482)
.+.|+..++.... .|+. .......+....... +++ ++|++.++.+.+. ...|+.. .+.
T Consensus 166 ~e~Al~~l~~~~~----~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~ 241 (765)
T PRK10049 166 SAPALGAIDDANL----TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARI 241 (765)
T ss_pred hHHHHHHHHhCCC----CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHH
Confidence 9999998876642 3321 011222222222210 234 7788888888864 2223221 111
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHhhHHHHHHHH
Q 038748 282 LAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFP---DIQTYNILFEFL 358 (482)
Q Consensus 282 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p---~~~~~~~ll~~~ 358 (482)
..+.++...|++++|...|+.+.+.....|+. ....+...|...|++++|+.+|+++.+..... .......+..++
T Consensus 242 d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~ 320 (765)
T PRK10049 242 DRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSL 320 (765)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHH
Confidence 11345567799999999999997332212332 22225678999999999999999987653211 123456667788
Q ss_pred HhcCCHHHHHHHHHHHHhCCC-----------ccC---hhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHH
Q 038748 359 VKGRKLWEASGLFNEMVKNEN-----------VLN---HENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLL 424 (482)
Q Consensus 359 ~~~g~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 424 (482)
...|++++|.++++.+.+... .|+ ...+..+...+...|++++|+++++++.... +-+...+..+
T Consensus 321 ~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~l 399 (765)
T PRK10049 321 LESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDY 399 (765)
T ss_pred HhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 999999999999999987532 122 1244567778889999999999999998753 3445788888
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHhh
Q 038748 425 VAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKCKA 481 (482)
Q Consensus 425 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 481 (482)
...+...|++++|++.+++..+.. +.+...+......+.+.|++++|+.+++++.+
T Consensus 400 A~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 400 ASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred HHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 899999999999999999998765 23456777777789999999999999998864
No 17
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.88 E-value=2.6e-19 Score=161.58 Aligned_cols=328 Identities=14% Similarity=0.123 Sum_probs=162.9
Q ss_pred hhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhh---------
Q 038748 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFA--------- 172 (482)
Q Consensus 102 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--------- 172 (482)
++|..+...+-..|++++|+.+++.+.+..+.....|..+..++...|+.+.|.+.|.+..+. .|+...
T Consensus 117 e~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLl 194 (966)
T KOG4626|consen 117 EAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLL 194 (966)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHH
Confidence 455556666666666666666666666666555566666666666666666666666665553 243332
Q ss_pred --------------------------HHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 038748 173 --------------------------LNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKT 226 (482)
Q Consensus 173 --------------------------~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 226 (482)
|+.|...+-..|+...|++.|++...-.+.-...|-.|...|...+.++.|...
T Consensus 195 ka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~ 274 (966)
T KOG4626|consen 195 KAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSC 274 (966)
T ss_pred HhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHH
Confidence 333333333444444444444443322222233444445555555555555554
Q ss_pred HHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHhhc
Q 038748 227 FGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPG-MTFFKLAFEECLTGQNLRGAEFIWGAMVG 305 (482)
Q Consensus 227 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 305 (482)
|.+.. ...|....++..+...|... |.++-|+..|++.++. .|+ ...|+.+..++-..|++.+|.+.+...+.
T Consensus 275 Y~rAl---~lrpn~A~a~gNla~iYyeq-G~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~ 348 (966)
T KOG4626|consen 275 YLRAL---NLRPNHAVAHGNLACIYYEQ-GLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALR 348 (966)
T ss_pred HHHHH---hcCCcchhhccceEEEEecc-ccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHH
Confidence 44443 33444444444444444444 5555555555554442 222 33455555555555555555555555441
Q ss_pred ccCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccC-
Q 038748 306 RIGFRP-DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPD-IQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLN- 382 (482)
Q Consensus 306 ~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~- 382 (482)
+.| -....+.|...|...|.+++|..+|....+- .|. ...++.|...|-+.|++++|...+++.++ +.|+
T Consensus 349 ---l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~f 421 (966)
T KOG4626|consen 349 ---LCPNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTF 421 (966)
T ss_pred ---hCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchH
Confidence 122 1334444555555555555555555554442 222 23344455555555555555555555544 2332
Q ss_pred hhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 038748 383 HENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLS-ETGNLLVAGLCDMHMLPEAVKYAKGMAE 446 (482)
Q Consensus 383 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~ 446 (482)
...|+.+...|-..|+++.|...+.+.+. +.|.. ..++.|...|-..|+..+|+.-+++..+
T Consensus 422 Ada~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk 484 (966)
T KOG4626|consen 422 ADALSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK 484 (966)
T ss_pred HHHHHhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc
Confidence 23445555555555555555555555544 22332 3445555555555555555555555543
No 18
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.87 E-value=1.5e-18 Score=156.87 Aligned_cols=336 Identities=11% Similarity=0.007 Sum_probs=267.5
Q ss_pred hcCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCC-----------------------
Q 038748 77 SYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL----------------------- 133 (482)
Q Consensus 77 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~----------------------- 133 (482)
..|+.++|+..++.+.. -.+-....|..+..++...|+.+.|...|.+..+.++.
T Consensus 128 erg~~~~al~~y~~aie--l~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 128 ERGQLQDALALYRAAIE--LKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred HhchHHHHHHHHHHHHh--cCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHH
Confidence 46777888888877665 33345677777777777777777777777766655431
Q ss_pred -----------CHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCC-HhhHHHHHHHHHhcCChHhHHHHHHHhhCCCC
Q 038748 134 -----------SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHD-VFALNSLLSAICRDGKTIDAWQFLRVVDGRIK 201 (482)
Q Consensus 134 -----------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 201 (482)
-..+|+.|...+-.+|+...|++-|++..+.. |+ ...|-.|-..|...+.+++|...|.....--+
T Consensus 206 cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld--P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrp 283 (966)
T KOG4626|consen 206 CYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD--PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRP 283 (966)
T ss_pred HHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCC--CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCC
Confidence 12234444445566788888888888887743 43 45688899999999999999999988665456
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHH
Q 038748 202 PDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFK 281 (482)
Q Consensus 202 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 281 (482)
-....+..+...|..+|+++.|++.|++.. .+.|.-..+|+.+..++-.. |++.+|.+.|.+..... +--....+
T Consensus 284 n~A~a~gNla~iYyeqG~ldlAI~~Ykral---~~~P~F~~Ay~NlanALkd~-G~V~ea~~cYnkaL~l~-p~hadam~ 358 (966)
T KOG4626|consen 284 NHAVAHGNLACIYYEQGLLDLAIDTYKRAL---ELQPNFPDAYNNLANALKDK-GSVTEAVDCYNKALRLC-PNHADAMN 358 (966)
T ss_pred cchhhccceEEEEeccccHHHHHHHHHHHH---hcCCCchHHHhHHHHHHHhc-cchHHHHHHHHHHHHhC-CccHHHHH
Confidence 678899999999999999999999999997 55787778999999999999 99999999999988753 33466788
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhcccCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-hhHHHHHHHHH
Q 038748 282 LAFEECLTGQNLRGAEFIWGAMVGRIGFRPD-THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDI-QTYNILFEFLV 359 (482)
Q Consensus 282 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~ 359 (482)
.+...+...|.+++|..+|.... .+.|. ...++.|...|-+.|++++|+..|++... ++|+- ..|+.+-..|-
T Consensus 359 NLgni~~E~~~~e~A~~ly~~al---~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~k 433 (966)
T KOG4626|consen 359 NLGNIYREQGKIEEATRLYLKAL---EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYK 433 (966)
T ss_pred HHHHHHHHhccchHHHHHHHHHH---hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHH
Confidence 99999999999999999999886 34554 56789999999999999999999999887 56664 57888889999
Q ss_pred hcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHH
Q 038748 360 KGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLS-ETGNLLVAGLC 429 (482)
Q Consensus 360 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~ 429 (482)
..|+.+.|.+.+.+.+..+.. -...++.|...|-..|++.+|+.-|+...+ ++||. ..|..++.++-
T Consensus 434 e~g~v~~A~q~y~rAI~~nPt-~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~cNllh~lq 501 (966)
T KOG4626|consen 434 EMGDVSAAIQCYTRAIQINPT-FAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYCNLLHCLQ 501 (966)
T ss_pred HhhhHHHHHHHHHHHHhcCcH-HHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhhHHHHHHH
Confidence 999999999999999885433 346788899999999999999999999987 56765 45655655543
No 19
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.85 E-value=5e-16 Score=153.85 Aligned_cols=403 Identities=11% Similarity=0.033 Sum_probs=271.9
Q ss_pred HHHHHHHHHhhcCCchhHhHHhhhhhcCCCCCCCH-hhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 038748 67 QETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSP-YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSY 145 (482)
Q Consensus 67 ~~~~~~ll~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 145 (482)
......++....|+.+.|++.|+...+ ..+-+. ..+ .++..++..|+.++|+..+++.......+......+...+
T Consensus 36 ~~y~~aii~~r~Gd~~~Al~~L~qaL~--~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly 112 (822)
T PRK14574 36 TQYDSLIIRARAGDTAPVLDYLQEESK--AGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAY 112 (822)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHh--hCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHH
Confidence 334444555667777888888777665 222221 233 7777777778888888888877743334444444456677
Q ss_pred HhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 038748 146 VVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKK 225 (482)
Q Consensus 146 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 225 (482)
...|++++|+++|+++.+.... +...+..++..+...++.++|++.++.+... .|+...+..++..+...++..+|++
T Consensus 113 ~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~-dp~~~~~l~layL~~~~~~~~~AL~ 190 (822)
T PRK14574 113 RNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER-DPTVQNYMTLSYLNRATDRNYDALQ 190 (822)
T ss_pred HHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc-CcchHHHHHHHHHHHhcchHHHHHH
Confidence 7778888888888888776432 4555666677777778888887777776553 3344444444444444555555777
Q ss_pred HHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHH------------------------------------------
Q 038748 226 TFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVN------------------------------------------ 263 (482)
Q Consensus 226 ~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~------------------------------------------ 263 (482)
.++++... .|++...+..+..++... |-...|++
T Consensus 191 ~~ekll~~---~P~n~e~~~~~~~~l~~~-~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~ 266 (822)
T PRK14574 191 ASSEAVRL---APTSEEVLKNHLEILQRN-RIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDI 266 (822)
T ss_pred HHHHHHHh---CCCCHHHHHHHHHHHHHc-CCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHH
Confidence 77777643 566666655555555554 43333333
Q ss_pred ------HHHHHHH-cCCCCCH-HH----HHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHH
Q 038748 264 ------SLKRMME-RGCNPGM-TF----FKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGA 331 (482)
Q Consensus 264 ------~~~~m~~-~~~~~~~-~~----~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 331 (482)
-++.+.. .+..|.. .. ..-.+-++...|++.++.+.|+.+. ..+.+.-..+-..+.++|...+++++
T Consensus 267 ~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~-~~~~~~P~y~~~a~adayl~~~~P~k 345 (822)
T PRK14574 267 ADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAME-AEGYKMPDYARRWAASAYIDRRLPEK 345 (822)
T ss_pred HHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh-hcCCCCCHHHHHHHHHHHHhcCCcHH
Confidence 2333222 1111221 11 2233556778899999999999994 66666556678889999999999999
Q ss_pred HHHHHHHHHHCCC-----CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-------------ccChh-hHHHHHHH
Q 038748 332 AMKLLDEMVYNGA-----FPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNEN-------------VLNHE-NCRAAVRV 392 (482)
Q Consensus 332 a~~~~~~m~~~g~-----~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-------------~~~~~-~~~~li~~ 392 (482)
|+.+|..+..... .++......|..++...+++++|..+++.+.+... .||-. .+..++..
T Consensus 346 A~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~ 425 (822)
T PRK14574 346 AAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQS 425 (822)
T ss_pred HHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHH
Confidence 9999999876431 22334457788899999999999999999987422 12222 23345677
Q ss_pred HhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccHHHH
Q 038748 393 YMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVY 472 (482)
Q Consensus 393 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a 472 (482)
+...|+..+|++.++.+.... +-|......+...+...|.+.+|.+.++...... +-+..+......++...|++++|
T Consensus 426 ~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l~e~~~A 503 (822)
T PRK14574 426 LVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLA-PRSLILERAQAETAMALQEWHQM 503 (822)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC-CccHHHHHHHHHHHHhhhhHHHH
Confidence 888999999999999997753 4566788888899999999999999997776553 23456777888889999999999
Q ss_pred HHHHHHHhh
Q 038748 473 EELLKKCKA 481 (482)
Q Consensus 473 ~~~~~~m~~ 481 (482)
..+.+++.+
T Consensus 504 ~~~~~~l~~ 512 (822)
T PRK14574 504 ELLTDDVIS 512 (822)
T ss_pred HHHHHHHHh
Confidence 988877653
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.85 E-value=1.6e-16 Score=160.14 Aligned_cols=375 Identities=11% Similarity=0.031 Sum_probs=286.7
Q ss_pred CCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHH
Q 038748 96 NDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNS 175 (482)
Q Consensus 96 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 175 (482)
....++....-.+......|+.++|++++.+.......+...+..+...+...|++++|.++|++..+.. +.+...+..
T Consensus 10 ~~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~ 88 (765)
T PRK10049 10 KSALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRG 88 (765)
T ss_pred ccCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 4556777778888899999999999999999988666777789999999999999999999999998863 235667788
Q ss_pred HHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccC
Q 038748 176 LLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255 (482)
Q Consensus 176 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 255 (482)
+..++...|++++|...++++....+.+.. +..+..++...|+.++|+..++++.. ..|++...+..+...+...
T Consensus 89 la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~---~~P~~~~~~~~la~~l~~~- 163 (765)
T PRK10049 89 LILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALP---RAPQTQQYPTEYVQALRNN- 163 (765)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHC-
Confidence 889999999999999999998776677777 99999999999999999999999974 4888888888888888887
Q ss_pred CChHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHh-----cCCh---hHHHHHHHHhhcccCCCCCHH-HH----
Q 038748 256 DGIYETVNSLKRMMERGCNPGM------TFFKLAFEECLT-----GQNL---RGAEFIWGAMVGRIGFRPDTH-MY---- 316 (482)
Q Consensus 256 ~~~~~a~~~~~~m~~~~~~~~~------~~~~~li~~~~~-----~g~~---~~a~~~~~~~~~~~~~~~~~~-~~---- 316 (482)
+..++|++.++.... .|+. ......+..... .+++ ++|.+.++.+.+.....|+.. .+
T Consensus 164 ~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~ 240 (765)
T PRK10049 164 RLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRAR 240 (765)
T ss_pred CChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHH
Confidence 999999998876553 2221 111222222221 2234 678888888864423334321 11
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcc---ChhhHHHHHHH
Q 038748 317 NMMISLYCYSNETGAAMKLLDEMVYNGAF-PDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVL---NHENCRAAVRV 392 (482)
Q Consensus 317 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~ 392 (482)
...+..+...|++++|+..|+.+.+.+.. |+. ....+...|...|++++|..+|+.+.+..... .......+..+
T Consensus 241 ~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a 319 (765)
T PRK10049 241 IDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYS 319 (765)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHH
Confidence 11133456779999999999999987532 332 22225678999999999999999988654221 12345667778
Q ss_pred HhcCCChHHHHHHHHHHHHcCC-----------CCCh---hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 038748 393 YMDSDDPYVAIKFWKYMIENHC-----------SDLS---ETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSK 458 (482)
Q Consensus 393 ~~~~~~~~~a~~~~~~m~~~~~-----------~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 458 (482)
+.+.|++++|.++++.+.+... .|+. ..+..+...+...|++++|+++++++.... +-+...+..
T Consensus 320 ~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~ 398 (765)
T PRK10049 320 LLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRID 398 (765)
T ss_pred HHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 8999999999999999986521 1231 234566778889999999999999998765 345788899
Q ss_pred HHHHHHHhccHHHHHHHHHHHhh
Q 038748 459 LKQILIKARKEAVYEELLKKCKA 481 (482)
Q Consensus 459 l~~~~~~~g~~~~a~~~~~~m~~ 481 (482)
+...+...|+.++|++.+++..+
T Consensus 399 lA~l~~~~g~~~~A~~~l~~al~ 421 (765)
T PRK10049 399 YASVLQARGWPRAAENELKKAEV 421 (765)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Confidence 99999999999999999998754
No 21
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.83 E-value=2.2e-15 Score=149.23 Aligned_cols=368 Identities=12% Similarity=-0.022 Sum_probs=258.3
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhc
Q 038748 104 WNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRD 183 (482)
Q Consensus 104 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 183 (482)
+......+.+.|++++|+..|++.....+ +...|..+..+|...|++++|++.++...+... .+...|..+..+|...
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p-~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p-~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKP-DPVYYSNRAACHNALGDWEKVVEDTTAALELDP-DYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHc
Confidence 44566778889999999999999887654 567888899999999999999999999988642 3566788899999999
Q ss_pred CChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhH--------------------------HhcCCC
Q 038748 184 GKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMV--------------------------IEVGWD 237 (482)
Q Consensus 184 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--------------------------~~~~~~ 237 (482)
|++++|...|..+......+......++.-+........+...++.-. ......
T Consensus 208 g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELD 287 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccc
Confidence 999999887766432111121111111111111101111111111000 000011
Q ss_pred CCChhhHHHHHHH---HHccCCChHHHHHHHHHHHHcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCC
Q 038748 238 PDNVPAYDSYLIT---LLKGCDGIYETVNSLKRMMERG-CNP-GMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD 312 (482)
Q Consensus 238 p~~~~~~~~l~~~---~~~~~~~~~~a~~~~~~m~~~~-~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 312 (482)
+.....+..+... .... +++++|++.|+...+.+ ..| ....+..+...+...|++++|...++..++ ..|+
T Consensus 288 ~~~~~~~~~l~~~~~e~~~~-~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~---l~P~ 363 (615)
T TIGR00990 288 EETGNGQLQLGLKSPESKAD-ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIE---LDPR 363 (615)
T ss_pred cccccchHHHHHHHHHhhhh-hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCC
Confidence 1111111111110 0122 67999999999998765 233 355677888888899999999999999873 2454
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHH
Q 038748 313 -THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVR 391 (482)
Q Consensus 313 -~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 391 (482)
...|..+...+...|++++|...|++..+... .+...|..+...+...|++++|...|++.++.... +...+..+..
T Consensus 364 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~ 441 (615)
T TIGR00990 364 VTQSYIKRASMNLELGDPDKAEEDFDKALKLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGV 441 (615)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHH
Confidence 56788888999999999999999999988632 35678888889999999999999999999986533 5667778889
Q ss_pred HHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHH
Q 038748 392 VYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPF------ALSKLKQILIK 465 (482)
Q Consensus 392 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~------~~~~l~~~~~~ 465 (482)
++.+.|++++|+..|+...+.. +.+...|+.+...+...|++++|++.|++..+.....+.. .+......+..
T Consensus 442 ~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~ 520 (615)
T TIGR00990 442 TQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQW 520 (615)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHH
Confidence 9999999999999999998743 3345788889999999999999999999988764321111 12222223344
Q ss_pred hccHHHHHHHHHHHh
Q 038748 466 ARKEAVYEELLKKCK 480 (482)
Q Consensus 466 ~g~~~~a~~~~~~m~ 480 (482)
.|++++|.+++++..
T Consensus 521 ~~~~~eA~~~~~kAl 535 (615)
T TIGR00990 521 KQDFIEAENLCEKAL 535 (615)
T ss_pred hhhHHHHHHHHHHHH
Confidence 699999999998864
No 22
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.82 E-value=1.7e-14 Score=125.34 Aligned_cols=401 Identities=11% Similarity=0.090 Sum_probs=249.9
Q ss_pred HHHHHhhCCCCcc---HHHHhhhcCCCCCHHHHHHHHH-hhcCC-c---hhHhHHhhhhhcCC-----------------
Q 038748 41 TLCEIIANTPSPT---VEDVLDKTLIRVSQETVEQVLK-FSYSH-P---GPAVKFFRWSAYQL----------------- 95 (482)
Q Consensus 41 ~~~~~l~~~~~~~---~~~~l~~~~~~~~~~~~~~ll~-~~~~~-~---~~a~~~~~~~~~~~----------------- 95 (482)
.+.+.+.+..-.| +...|++.|.++++..-..+++ .+..+ . -.-.+-|-.+.+..
T Consensus 121 nL~kmIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~ 200 (625)
T KOG4422|consen 121 NLLKMISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLF 200 (625)
T ss_pred HHHHHHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHH
Confidence 4444554443333 7888999999999998888888 33211 1 11112222222110
Q ss_pred -CCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhH
Q 038748 96 -NDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFAL 173 (482)
Q Consensus 96 -~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 173 (482)
-.+.+..+|..+|.++|+--..+.|.+++++-..... ....+||.+|.+-.-.. ..++..+|......||..|+
T Consensus 201 E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~Tf 276 (625)
T KOG4422|consen 201 ETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTF 276 (625)
T ss_pred hhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhH
Confidence 1234667888888888888888888888888776654 67788888877654332 26778888888888888888
Q ss_pred HHHHHHHHhcCChHhHH----HHHHHhhC-CCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHhHHh------cCCCCCCh
Q 038748 174 NSLLSAICRDGKTIDAW----QFLRVVDG-RIKPDNDTYAILLEGWEKERDVAN-AKKTFGEMVIE------VGWDPDNV 241 (482)
Q Consensus 174 ~~ll~~~~~~g~~~~a~----~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~------~~~~p~~~ 241 (482)
|+++.+.++.|+++.|. +++.+|++ |+.|...+|..+|..+++.++..+ |..++.++... .-+.|++.
T Consensus 277 NalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~ 356 (625)
T KOG4422|consen 277 NALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDN 356 (625)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchh
Confidence 88888888888776654 45556665 788888888888888887777644 44455544432 12345555
Q ss_pred hhHHHHHHHHHccCCChHHHHHHHHHHHHcC----CCCC---HHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHH
Q 038748 242 PAYDSYLITLLKGCDGIYETVNSLKRMMERG----CNPG---MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTH 314 (482)
Q Consensus 242 ~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~----~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 314 (482)
..|...|..+... .+.+-|.++..-+.... +.|+ ..-|..+....|.....+.....|+.|+ -.-+-|+..
T Consensus 357 ~FF~~AM~Ic~~l-~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lV-P~~y~p~~~ 434 (625)
T KOG4422|consen 357 KFFQSAMSICSSL-RDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLV-PSAYFPHSQ 434 (625)
T ss_pred HHHHHHHHHHHHh-hhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cceecCCch
Confidence 5666677777766 77777777665544321 2232 2335566677777778888888888886 445567777
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC-CH--------HH-----HHHHH-------HH
Q 038748 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGR-KL--------WE-----ASGLF-------NE 373 (482)
Q Consensus 315 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g-~~--------~~-----a~~~~-------~~ 373 (482)
+...++++....|+++-.-+++.++...|-.-....-.-++..+++.+ +. .. |..++ .+
T Consensus 435 ~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R 514 (625)
T KOG4422|consen 435 TMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIR 514 (625)
T ss_pred hHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 777778877778888888888888777664433333333333444333 11 00 11111 12
Q ss_pred HHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCC-CCChhhHH---HHHHHHHhcCChhHHHHHHHHHHHcCC
Q 038748 374 MVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHC-SDLSETGN---LLVAGLCDMHMLPEAVKYAKGMAEKGI 449 (482)
Q Consensus 374 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~---~li~~~~~~g~~~~A~~~~~~m~~~~~ 449 (482)
+.. ........+.+.-.+.+.|..++|.+++..+.+++- .|-....| -++..-.+.++...|..+++-|...+.
T Consensus 515 ~r~--~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 515 QRA--QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNL 592 (625)
T ss_pred HHh--ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCc
Confidence 222 223344556666667778888888888887754432 23333444 444555566777778887777766554
No 23
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.78 E-value=1.3e-13 Score=137.01 Aligned_cols=365 Identities=12% Similarity=0.005 Sum_probs=271.3
Q ss_pred hhcCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHH
Q 038748 76 FSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAI 155 (482)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 155 (482)
...|+.++|+..++.... ...........+...+...|++++|+++|+++.+..+.+...+..++..+...++.++|+
T Consensus 79 ~~~G~~~~A~~~~eka~~--p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl 156 (822)
T PRK14574 79 GWAGRDQEVIDVYERYQS--SMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVL 156 (822)
T ss_pred HHcCCcHHHHHHHHHhcc--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHH
Confidence 346888999999887653 222223333333567778899999999999999998878888888888889999999999
Q ss_pred HHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH--------
Q 038748 156 TTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTF-------- 227 (482)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~-------- 227 (482)
+.++.+... .|+...+..++..+...++..+|++.++++....+.+...+..++.+..+.|-...|.++.
T Consensus 157 ~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~ 234 (822)
T PRK14574 157 KQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVS 234 (822)
T ss_pred HHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccC
Confidence 999998875 4565556444444444566666888888877655666777777766666655544444433
Q ss_pred ----------------------------------------HHhHHhcCCCCCChh----hHHHHHHHHHccCCChHHHHH
Q 038748 228 ----------------------------------------GEMVIEVGWDPDNVP----AYDSYLITLLKGCDGIYETVN 263 (482)
Q Consensus 228 ----------------------------------------~~~~~~~~~~p~~~~----~~~~l~~~~~~~~~~~~~a~~ 263 (482)
+.+....+-.|.... +..-.+.++... ++..++++
T Consensus 235 ~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r-~r~~~vi~ 313 (822)
T PRK14574 235 AEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVR-HQTADLIK 313 (822)
T ss_pred HHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHh-hhHHHHHH
Confidence 333322222342211 122345666677 99999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038748 264 SLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIG----FRPDTHMYNMMISLYCYSNETGAAMKLLDEM 339 (482)
Q Consensus 264 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 339 (482)
.|+.|...+.+....+-..+..+|...+++++|+.++..+....+ ..++......|.-+|...+++++|..+++.+
T Consensus 314 ~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~ 393 (822)
T PRK14574 314 EYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNY 393 (822)
T ss_pred HHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 999999998776778889999999999999999999999864432 2334555678999999999999999999999
Q ss_pred HHCCC-------------CCCHh-hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHH
Q 038748 340 VYNGA-------------FPDIQ-TYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKF 405 (482)
Q Consensus 340 ~~~g~-------------~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 405 (482)
.+.-. .||-. .+..++..+...|++.+|++.++++....+. |......+...+...|.+..|++.
T Consensus 394 ~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~-n~~l~~~~A~v~~~Rg~p~~A~~~ 472 (822)
T PRK14574 394 SEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPA-NQNLRIALASIYLARDLPRKAEQE 472 (822)
T ss_pred HhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Confidence 88311 11222 2344566788899999999999999887654 888899999999999999999999
Q ss_pred HHHHHHcCCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 038748 406 WKYMIENHCSDL-SETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448 (482)
Q Consensus 406 ~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 448 (482)
++..... .|+ ..+....+.++...|++.+|..+.+...+..
T Consensus 473 ~k~a~~l--~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~ 514 (822)
T PRK14574 473 LKAVESL--APRSLILERAQAETAMALQEWHQMELLTDDVISRS 514 (822)
T ss_pred HHHHhhh--CCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhC
Confidence 9777764 344 4667778888889999999999999887664
No 24
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.77 E-value=1.6e-14 Score=137.71 Aligned_cols=392 Identities=13% Similarity=0.098 Sum_probs=274.3
Q ss_pred CchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHhhCChhhHHH
Q 038748 80 HPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENV---LSLATFASVFSSYVVADRVKDAIT 156 (482)
Q Consensus 80 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~ 156 (482)
....++..+...-. -...|+.+.+.|...|.-.|+++.++.+.+.+..... .-...|..+.++|-..|++++|..
T Consensus 251 s~~~~~~ll~~ay~--~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~ 328 (1018)
T KOG2002|consen 251 SYKKGVQLLQRAYK--ENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFK 328 (1018)
T ss_pred HHHHHHHHHHHHHh--hcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHH
Confidence 34566666665555 5667889999999999999999999999999887763 345668899999999999999999
Q ss_pred HHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHhHH
Q 038748 157 TFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKER----DVANAKKTFGEMVI 232 (482)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~ 232 (482)
.|.+..+....-.+..+-.|..++.+.|+++.+...|+.+-...+.+..+..++...|...+ ..+.|..++.+...
T Consensus 329 yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~ 408 (1018)
T KOG2002|consen 329 YYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLE 408 (1018)
T ss_pred HHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHh
Confidence 99888775422223445667899999999999999999988777888888888888888775 45666666666653
Q ss_pred hcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHH----HcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccc-
Q 038748 233 EVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMM----ERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRI- 307 (482)
Q Consensus 233 ~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~----~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~- 307 (482)
..|++..+|-.+...+.. ++...++..|.... ..+..+.....|.+.......|++..|...|.......
T Consensus 409 ---~~~~d~~a~l~laql~e~--~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~ 483 (1018)
T KOG2002|consen 409 ---QTPVDSEAWLELAQLLEQ--TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLL 483 (1018)
T ss_pred ---cccccHHHHHHHHHHHHh--cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhh
Confidence 356677777766666655 44555576666543 44555777788888888888888888888888774220
Q ss_pred -CCCCCH------HHHHHHHHHHHhcCC----------------------------------HHHHHHHHHHHHHCC-CC
Q 038748 308 -GFRPDT------HMYNMMISLYCYSNE----------------------------------TGAAMKLLDEMVYNG-AF 345 (482)
Q Consensus 308 -~~~~~~------~~~~~li~~~~~~~~----------------------------------~~~a~~~~~~m~~~g-~~ 345 (482)
...+|. .+-..+...+-..++ ..+|...+....+.. ..
T Consensus 484 ~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~n 563 (1018)
T KOG2002|consen 484 EVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSN 563 (1018)
T ss_pred hhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCC
Confidence 011121 111112222222233 333444443332211 11
Q ss_pred C----------------------------------CHhhHHHHHHHHHh------------cCCHHHHHHHHHHHHhCCC
Q 038748 346 P----------------------------------DIQTYNILFEFLVK------------GRKLWEASGLFNEMVKNEN 379 (482)
Q Consensus 346 p----------------------------------~~~~~~~ll~~~~~------------~g~~~~a~~~~~~~~~~~~ 379 (482)
| |....-.|...|.+ .+..++|+++|.+.++..+
T Consensus 564 p~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dp 643 (1018)
T KOG2002|consen 564 PNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDP 643 (1018)
T ss_pred cHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCc
Confidence 2 22222222222211 2346678888888888765
Q ss_pred ccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH-HcCCCCCHHHHHH
Q 038748 380 VLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMA-EKGIQVTPFALSK 458 (482)
Q Consensus 380 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~~~~~~~~~~~~ 458 (482)
. |...-|.+.-.++..|++..|..+|.++.+... -+..+|-.+.++|..+|+|-.|+++|+... ..+-..+..+...
T Consensus 644 k-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~ 721 (1018)
T KOG2002|consen 644 K-NMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHY 721 (1018)
T ss_pred c-hhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHH
Confidence 4 677777888888999999999999999987643 344678889999999999999999999874 4455667889999
Q ss_pred HHHHHHHhccHHHHHHHHHHHh
Q 038748 459 LKQILIKARKEAVYEELLKKCK 480 (482)
Q Consensus 459 l~~~~~~~g~~~~a~~~~~~m~ 480 (482)
|.+++.+.|++.+|.+.+.+.+
T Consensus 722 Lara~y~~~~~~eak~~ll~a~ 743 (1018)
T KOG2002|consen 722 LARAWYEAGKLQEAKEALLKAR 743 (1018)
T ss_pred HHHHHHHhhhHHHHHHHHHHHH
Confidence 9999999999999988776543
No 25
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.77 E-value=1.4e-13 Score=119.83 Aligned_cols=402 Identities=15% Similarity=0.138 Sum_probs=285.0
Q ss_pred HHHHHHH-hhcCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhh---CCCcHHHHHHHHHHHhcC-------------
Q 038748 69 TVEQVLK-FSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGK---NCLFDAMWDAIKSMKKEN------------- 131 (482)
Q Consensus 69 ~~~~ll~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~---~~~~~~a~~~~~~~~~~~------------- 131 (482)
+=+.+++ ..++...++.-+++.|... ++..+...--.|+..-+- ++-+-.-++-|-.|...|
T Consensus 118 ~E~nL~kmIS~~EvKDs~ilY~~m~~e-~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vA 196 (625)
T KOG4422|consen 118 TENNLLKMISSREVKDSCILYERMRSE-NVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVA 196 (625)
T ss_pred chhHHHHHHhhcccchhHHHHHHHHhc-CCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHH
Confidence 4455666 6678889999999998874 777777666555544332 222212223333333221
Q ss_pred -------CCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhC-CCCCC
Q 038748 132 -------VLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDG-RIKPD 203 (482)
Q Consensus 132 -------~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~~~~ 203 (482)
+.+..+|.++|.++++-...+.|.+++++......+.+..+||.+|.+-.-.-+ .++..+|.. ...||
T Consensus 197 dL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pn 272 (625)
T KOG4422|consen 197 DLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPN 272 (625)
T ss_pred HHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCc
Confidence 236788999999999999999999999999988788999999999987654333 567777654 78999
Q ss_pred HHHHHHHHHHHHhcCCHHHH----HHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCCh-HHHHHHHHHHHHc--C--CC
Q 038748 204 NDTYAILLEGWEKERDVANA----KKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGI-YETVNSLKRMMER--G--CN 274 (482)
Q Consensus 204 ~~~~~~l~~~~~~~~~~~~a----~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~-~~a~~~~~~m~~~--~--~~ 274 (482)
..|+|+++.+..+.|+++.| .+++.+|++ .|+.| +..+|..+|..+.+. ++. ..+..++.++... | ++
T Consensus 273 l~TfNalL~c~akfg~F~~ar~aalqil~EmKe-iGVeP-sLsSyh~iik~f~re-~dp~k~as~~i~dI~N~ltGK~fk 349 (625)
T KOG4422|consen 273 LFTFNALLSCAAKFGKFEDARKAALQILGEMKE-IGVEP-SLSSYHLIIKNFKRE-SDPQKVASSWINDIQNSLTGKTFK 349 (625)
T ss_pred hHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHH-hCCCc-chhhHHHHHHHhccc-CCchhhhHHHHHHHHHhhccCccc
Confidence 99999999999999988765 456677775 69999 688999999999998 555 4455666665542 2 22
Q ss_pred ----CCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccC---CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 038748 275 ----PGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIG---FRPD---THMYNMMISLYCYSNETGAAMKLLDEMVYNGA 344 (482)
Q Consensus 275 ----~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 344 (482)
-|...|...+..|.+..+.+.|.++..-+....+ +.|+ ..-|..+....|.....+.-...|+.|.-.-+
T Consensus 350 p~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y 429 (625)
T KOG4422|consen 350 PITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAY 429 (625)
T ss_pred CCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccee
Confidence 2566788889999999999999988776631111 2232 23466677888888899999999999998888
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCC-Ch--------HH-----HH-------
Q 038748 345 FPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSD-DP--------YV-----AI------- 403 (482)
Q Consensus 345 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~--------~~-----a~------- 403 (482)
-|+..+...++++..-.|.++-.-++|..+...|-..+...-..++..+++.. .. .. |.
T Consensus 430 ~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e 509 (625)
T KOG4422|consen 430 FPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYE 509 (625)
T ss_pred cCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999988774444444444444444433 11 11 11
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 038748 404 KFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI----QVTPFALSKLKQILIKARKEAVYEELLKKC 479 (482)
Q Consensus 404 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 479 (482)
..-.+|.+..++| ...+.++-.+.+.|+.++|.++|..+.+.+- .|......-+++.-.+.+....|..+++-|
T Consensus 510 ~~~~R~r~~~~~~--t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 510 SQPIRQRAQDWPA--TSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred hhHHHHHhccCCh--hHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 1112333334433 4667777788999999999999999865542 233334446666777777888888877765
Q ss_pred h
Q 038748 480 K 480 (482)
Q Consensus 480 ~ 480 (482)
.
T Consensus 588 ~ 588 (625)
T KOG4422|consen 588 S 588 (625)
T ss_pred H
Confidence 3
No 26
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.77 E-value=4.5e-13 Score=135.91 Aligned_cols=230 Identities=10% Similarity=-0.014 Sum_probs=173.5
Q ss_pred ChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHH
Q 038748 240 NVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMM 319 (482)
Q Consensus 240 ~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 319 (482)
+...|..+..++.. ++.++|+..+.+..... |+......+...+...|++++|...|+.+. .. .|+...+..+
T Consensus 476 ~~~a~~~LG~~l~~--~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~-~~--~p~~~a~~~l 548 (987)
T PRK09782 476 DAAAWNRLAKCYRD--TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKIS-LH--DMSNEDLLAA 548 (987)
T ss_pred CHHHHHHHHHHHHh--CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHh-cc--CCCcHHHHHH
Confidence 44445555544443 66777888777766543 555544445555678999999999999875 22 4555556677
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCCh
Q 038748 320 ISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDP 399 (482)
Q Consensus 320 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 399 (482)
..++.+.|+.++|...++...+... .+...+..+...+...|++++|...+++..+. .|+...+..+..++.+.|++
T Consensus 549 a~all~~Gd~~eA~~~l~qAL~l~P-~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~ 625 (987)
T PRK09782 549 ANTAQAAGNGAARDRWLQQAEQRGL-GDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNV 625 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCH
Confidence 7788899999999999999887642 22233333344455669999999999999875 45677888999999999999
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 038748 400 YVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKC 479 (482)
Q Consensus 400 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 479 (482)
++|...++...+.. +.+...++.+..++...|++++|+..+++..+... -+...+..+..++...|++++|+..+++.
T Consensus 626 deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P-~~~~a~~nLA~al~~lGd~~eA~~~l~~A 703 (987)
T PRK09782 626 PAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLP-DDPALIRQLAYVNQRLDDMAATQHYARLV 703 (987)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999998854 23446778888889999999999999999987753 46678889999999999999999999887
Q ss_pred hh
Q 038748 480 KA 481 (482)
Q Consensus 480 ~~ 481 (482)
.+
T Consensus 704 l~ 705 (987)
T PRK09782 704 ID 705 (987)
T ss_pred Hh
Confidence 53
No 27
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.74 E-value=5.8e-13 Score=135.12 Aligned_cols=154 Identities=8% Similarity=-0.069 Sum_probs=97.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChH
Q 038748 321 SLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPY 400 (482)
Q Consensus 321 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 400 (482)
..+...|++++|...|+++... .|+...+..+...+.+.|+.++|..+++...+.... +...+..+.......|+++
T Consensus 517 ~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~~~Gr~~ 593 (987)
T PRK09782 517 YQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRYIPGQPE 593 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHhCCCHH
Confidence 3334566677777666665443 233334445555666677777777777776664321 2222223333344557777
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHh
Q 038748 401 VAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKCK 480 (482)
Q Consensus 401 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 480 (482)
+|...+++..+. .|+...|..+..++.+.|++++|+..+++...... .+...+..+..++...|++++|++.+++..
T Consensus 594 eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~P-d~~~a~~nLG~aL~~~G~~eeAi~~l~~AL 670 (987)
T PRK09782 594 LALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELEP-NNSNYQAALGYALWDSGDIAQSREMLERAH 670 (987)
T ss_pred HHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 777777777763 35666777777777788888888888888776652 345666677777788888888887777654
No 28
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.69 E-value=1.9e-12 Score=123.05 Aligned_cols=360 Identities=12% Similarity=0.050 Sum_probs=231.8
Q ss_pred CCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHH
Q 038748 114 NCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193 (482)
Q Consensus 114 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 193 (482)
.|++++|.+++.++.+..+.....|..|...|-..|+.+++...+-.....+. -|...|..+.....+.|+++.|.-.|
T Consensus 152 rg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p-~d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNP-KDYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred hCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHhcccHHHHHHHH
Confidence 47777777777777777766667777777777777777777766655554432 25566777777777777777777777
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHH----HHHHHHccCCChHHHHHHHHHHH
Q 038748 194 RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDS----YLITLLKGCDGIYETVNSLKRMM 269 (482)
Q Consensus 194 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~----l~~~~~~~~~~~~~a~~~~~~m~ 269 (482)
.+..+-.+++...+---+..|.+.|+...|..-|.++... ..|.+..-+.. .+..+... ++-+.|.+.++...
T Consensus 231 ~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~--~p~~d~er~~d~i~~~~~~~~~~-~~~e~a~~~le~~~ 307 (895)
T KOG2076|consen 231 SRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQL--DPPVDIERIEDLIRRVAHYFITH-NERERAAKALEGAL 307 (895)
T ss_pred HHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhh--CCchhHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHH
Confidence 7765555666666666666777777777777777777532 11222222222 23444444 55566666666655
Q ss_pred Hc-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhc--------------------------ccCCCCCHHHHHHHHHH
Q 038748 270 ER-GCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVG--------------------------RIGFRPDTHMYNMMISL 322 (482)
Q Consensus 270 ~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--------------------------~~~~~~~~~~~~~li~~ 322 (482)
.. +-..+...++.++..+.+...++.+......+.. ..++.++..++ -++-+
T Consensus 308 s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~ic 386 (895)
T KOG2076|consen 308 SKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RLMIC 386 (895)
T ss_pred hhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hHhhh
Confidence 42 2223445566666666777777766666655531 01112233331 12223
Q ss_pred HHhcCCHHHHHHHHHHHHHCC--CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChH
Q 038748 323 YCYSNETGAAMKLLDEMVYNG--AFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPY 400 (482)
Q Consensus 323 ~~~~~~~~~a~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 400 (482)
+...+..+....+.....+.. +.-+...|.-+..++...|++.+|+.+|..+......-+...|-.+..+|...|.++
T Consensus 387 L~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e 466 (895)
T KOG2076|consen 387 LVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYE 466 (895)
T ss_pred hhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHH
Confidence 334444444445555555554 333456778888889999999999999998887765556778888889999999999
Q ss_pred HHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHH--------HcCCCCCHHHHHHHHHHHHHhccHHH
Q 038748 401 VAIKFWKYMIENHCSDLS-ETGNLLVAGLCDMHMLPEAVKYAKGMA--------EKGIQVTPFALSKLKQILIKARKEAV 471 (482)
Q Consensus 401 ~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~--------~~~~~~~~~~~~~l~~~~~~~g~~~~ 471 (482)
.|.+.|+..+.. .|+. ..--.|...+-+.|+.++|.+.+..+. ..+..|+..........+.+.|+.++
T Consensus 467 ~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~ 544 (895)
T KOG2076|consen 467 EAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREE 544 (895)
T ss_pred HHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHH
Confidence 999999888874 3443 444556667788899999999888853 23455666667777778888888887
Q ss_pred HHHHHHHHh
Q 038748 472 YEELLKKCK 480 (482)
Q Consensus 472 a~~~~~~m~ 480 (482)
.+.+...|.
T Consensus 545 fi~t~~~Lv 553 (895)
T KOG2076|consen 545 FINTASTLV 553 (895)
T ss_pred HHHHHHHHH
Confidence 766655553
No 29
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.68 E-value=8.4e-13 Score=123.11 Aligned_cols=284 Identities=10% Similarity=0.014 Sum_probs=200.4
Q ss_pred hCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHH--HHHHHHHhcCCHHHHHH
Q 038748 148 ADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYA--ILLEGWEKERDVANAKK 225 (482)
Q Consensus 148 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~ 225 (482)
.|+++.|.+.+....+..-.| ...|.....+..+.|+++.|...+.++.+. .|+..... .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~-~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL-ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 488888887777665542111 222333344457788888888888887542 34433222 33667788888888888
Q ss_pred HHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCChhHHHH
Q 038748 226 TFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGM-------TFFKLAFEECLTGQNLRGAEF 298 (482)
Q Consensus 226 ~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~-------~~~~~li~~~~~~g~~~~a~~ 298 (482)
.++++. ...|++......+...+... |++++|.+++..+.+.+..++. .+|..++.......+.+...+
T Consensus 175 ~l~~~~---~~~P~~~~al~ll~~~~~~~-gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~ 250 (398)
T PRK10747 175 GVDKLL---EVAPRHPEVLRLAEQAYIRT-GAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKR 250 (398)
T ss_pred HHHHHH---hcCCCCHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 888886 34677788888888888888 8888888888888887654322 123333444444555666777
Q ss_pred HHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 038748 299 IWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNE 378 (482)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 378 (482)
+++.+.+. .+.+......+...+...|+.++|.+++++..+. .|+.... ++.+....++.+++.+..+...+..
T Consensus 251 ~w~~lp~~--~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~ 324 (398)
T PRK10747 251 WWKNQSRK--TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH 324 (398)
T ss_pred HHHhCCHH--HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC
Confidence 77776422 2456777888888888999999999998888774 3444222 3344455688888888888888765
Q ss_pred CccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 038748 379 NVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAE 446 (482)
Q Consensus 379 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 446 (482)
.. |...+..+...|.+.+++++|.+.|+...+ ..|+...|..+...+.+.|+.++|..++++...
T Consensus 325 P~-~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 325 GD-TPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 43 666777888888899999999999988887 458888888888888899999999888887643
No 30
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.67 E-value=5.4e-13 Score=124.36 Aligned_cols=286 Identities=8% Similarity=-0.017 Sum_probs=216.0
Q ss_pred CCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHH--HHHHHHHhcCChHhHHH
Q 038748 114 NCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALN--SLLSAICRDGKTIDAWQ 191 (482)
Q Consensus 114 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~ll~~~~~~g~~~~a~~ 191 (482)
.|+++.|.+.+....+........|.....+..+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|.+
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 699999998888766653222233444455558889999999999999875 35543332 33678889999999999
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChh-----hHHHHHHHHHccCCChHHHHHHHH
Q 038748 192 FLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVP-----AYDSYLITLLKGCDGIYETVNSLK 266 (482)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~-----~~~~l~~~~~~~~~~~~~a~~~~~ 266 (482)
.++.+.+..+-+...+..+...|.+.|++++|.+++..+.+.....|+... +|..++...... .+.+...++++
T Consensus 175 ~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~-~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMAD-QGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHH
Confidence 999988777888999999999999999999999999999865333232111 233334444444 55566666666
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 038748 267 RMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFP 346 (482)
Q Consensus 267 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 346 (482)
.+.+. .+.+......+...+...|+.++|.+++.+..+ ..++.... ++.+....++.+++.+..+...+... -
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P-~ 326 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK---RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHG-D 326 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCC-C
Confidence 65432 345677888899999999999999999999873 25555322 34444566999999999999888633 2
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHH
Q 038748 347 DIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIE 411 (482)
Q Consensus 347 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 411 (482)
|...+..+...|.+.|++++|.+.|+...+. .|+...|..+..++.+.|+.++|.+++++...
T Consensus 327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 327 TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5566778889999999999999999999884 68888999999999999999999999998754
No 31
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.66 E-value=3.4e-12 Score=122.16 Aligned_cols=383 Identities=12% Similarity=0.051 Sum_probs=239.7
Q ss_pred HHHHHH--hhcCCchhHhHHhhhhhcCCCCCCC-HhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 038748 70 VEQVLK--FSYSHPGPAVKFFRWSAYQLNDKHS-PYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYV 146 (482)
Q Consensus 70 ~~~ll~--~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 146 (482)
+-.+-+ +..|+++.|...|....+ ...-+ +..+--+...+.+.|+++.+...|+.+....+.+..+...|...|+
T Consensus 310 ~Y~~gRs~Ha~Gd~ekA~~yY~~s~k--~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya 387 (1018)
T KOG2002|consen 310 FYQLGRSYHAQGDFEKAFKYYMESLK--ADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYA 387 (1018)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHc--cCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHH
Confidence 334444 668999999999987665 22222 4556677889999999999999999998888777777777777776
Q ss_pred hhC----ChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhh-----CCCCCCHHHHHHHHHHHHhc
Q 038748 147 VAD----RVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVD-----GRIKPDNDTYAILLEGWEKE 217 (482)
Q Consensus 147 ~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~ 217 (482)
..+ ..+.|..++....+.- ..|...|-.+...+-...-+.. +.+|.... .+.++-+...|.+...+...
T Consensus 388 ~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~ 465 (1018)
T KOG2002|consen 388 HSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRL 465 (1018)
T ss_pred hhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHh
Confidence 664 4455555555554432 2344455544444443322222 43333221 12334555555555555555
Q ss_pred CCHHHHHHHHHHhHHhc--CC---------------------------------------CCCChhhHHHHHHHHHccCC
Q 038748 218 RDVANAKKTFGEMVIEV--GW---------------------------------------DPDNVPAYDSYLITLLKGCD 256 (482)
Q Consensus 218 ~~~~~a~~~~~~~~~~~--~~---------------------------------------~p~~~~~~~~l~~~~~~~~~ 256 (482)
|+++.|...|....... .. .|.-+..|-.+. ++.+..+
T Consensus 466 g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~-~ma~~k~ 544 (1018)
T KOG2002|consen 466 GNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLG-CMARDKN 544 (1018)
T ss_pred cChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhh-HHHHhcc
Confidence 55555555555544320 01 222122222222 1111114
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHh-----------
Q 038748 257 GIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCY----------- 325 (482)
Q Consensus 257 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----------- 325 (482)
...+|...+....... ..+...++.+...+.+...+..|.+-|....++....+|..+.-+|...|..
T Consensus 545 ~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek 623 (1018)
T KOG2002|consen 545 NLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEK 623 (1018)
T ss_pred CcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHH
Confidence 4444444444444321 1223333334445555556666666555444333334566555555554432
Q ss_pred -cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHH
Q 038748 326 -SNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIK 404 (482)
Q Consensus 326 -~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 404 (482)
.+..++|+++|.+..+...+ |...-|-+.-.++..|++.+|..+|....+.... ...+|..+.++|..+|++..|++
T Consensus 624 ~kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~-~~dv~lNlah~~~e~~qy~~AIq 701 (1018)
T KOG2002|consen 624 EKKHQEKALQLYGKVLRNDPK-NMYAANGIGIVLAEKGRFSEARDIFSQVREATSD-FEDVWLNLAHCYVEQGQYRLAIQ 701 (1018)
T ss_pred HHHHHHHHHHHHHHHHhcCcc-hhhhccchhhhhhhccCchHHHHHHHHHHHHHhh-CCceeeeHHHHHHHHHHHHHHHH
Confidence 24578899999998886433 6777777888889999999999999999987542 55678899999999999999999
Q ss_pred HHHHHHHc-CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 038748 405 FWKYMIEN-HCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLK 460 (482)
Q Consensus 405 ~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~ 460 (482)
+|+...+. .-..+....+.|..++.+.|++.+|.+.+.......+.-....|+..+
T Consensus 702 mYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~ 758 (1018)
T KOG2002|consen 702 MYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLAL 758 (1018)
T ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHH
Confidence 99998754 334566788999999999999999999988887665544445555443
No 32
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.66 E-value=8.2e-12 Score=118.76 Aligned_cols=361 Identities=10% Similarity=0.019 Sum_probs=268.4
Q ss_pred hhcCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHH
Q 038748 76 FSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAI 155 (482)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 155 (482)
...|+.+.|.+++..+.+ ..+.+...|.+|...|-..|+.+++...+--.-..++.+...|..+.....+.|++++|.
T Consensus 150 farg~~eeA~~i~~EvIk--qdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 150 FARGDLEEAEEILMEVIK--QDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred HHhCCHHHHHHHHHHHHH--hCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHH
Confidence 457999999999999998 566788999999999999999999999888888888888899999999999999999999
Q ss_pred HHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCH-H----HHHHHHHHHHhcCCHHHHHHHHHHh
Q 038748 156 TTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDN-D----TYAILLEGWEKERDVANAKKTFGEM 230 (482)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~----~~~~l~~~~~~~~~~~~a~~~~~~~ 230 (482)
-.|.+.++... ++...+---...|-+.|+...|...|.++-.-.+|.. . .--.+++.+...++-+.|.+.++..
T Consensus 228 ~cy~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~ 306 (895)
T KOG2076|consen 228 YCYSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGA 306 (895)
T ss_pred HHHHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99999999753 3555555567788899999999999998765444332 2 2234566677788889999998888
Q ss_pred HHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCC---------------------------CCHHHHHHH
Q 038748 231 VIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCN---------------------------PGMTFFKLA 283 (482)
Q Consensus 231 ~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~---------------------------~~~~~~~~l 283 (482)
..+ +..-.+...++.++..+++. ..++.+......+...... ++...+ .+
T Consensus 307 ~s~-~~~~~~~ed~ni~ael~l~~-~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl 383 (895)
T KOG2076|consen 307 LSK-EKDEASLEDLNILAELFLKN-KQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RL 383 (895)
T ss_pred Hhh-ccccccccHHHHHHHHHHHh-HHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hH
Confidence 763 23333566788999999999 9999999988888762222 222221 12
Q ss_pred HHHHHhcCChhHHHHHHHHhhcccC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc
Q 038748 284 FEECLTGQNLRGAEFIWGAMVGRIG--FRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKG 361 (482)
Q Consensus 284 i~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 361 (482)
.-++......+....+..... ... +.-+...|.-+..+|...|++.+|+.+|..+......-+...|..+..+|...
T Consensus 384 ~icL~~L~~~e~~e~ll~~l~-~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l 462 (895)
T KOG2076|consen 384 MICLVHLKERELLEALLHFLV-EDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMEL 462 (895)
T ss_pred hhhhhcccccchHHHHHHHHH-HhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHH
Confidence 223333344444444444443 334 33456788899999999999999999999998875555677899999999999
Q ss_pred CCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHH--------cCCCCChhhHHHHHHHHHhcCC
Q 038748 362 RKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIE--------NHCSDLSETGNLLVAGLCDMHM 433 (482)
Q Consensus 362 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--------~~~~p~~~~~~~li~~~~~~g~ 433 (482)
|..++|.+.|+..+..... +...-..|-..+-+.|+.++|.+++..+.. .+..|+...--.....+...|+
T Consensus 463 ~e~e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk 541 (895)
T KOG2076|consen 463 GEYEEAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGK 541 (895)
T ss_pred hhHHHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhh
Confidence 9999999999999886432 444555677788899999999999988642 2344444444445566677787
Q ss_pred hhHHHHHHHHH
Q 038748 434 LPEAVKYAKGM 444 (482)
Q Consensus 434 ~~~A~~~~~~m 444 (482)
.++=+.+...|
T Consensus 542 ~E~fi~t~~~L 552 (895)
T KOG2076|consen 542 REEFINTASTL 552 (895)
T ss_pred HHHHHHHHHHH
Confidence 77644443333
No 33
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.65 E-value=2.1e-15 Score=134.32 Aligned_cols=261 Identities=13% Similarity=0.068 Sum_probs=102.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHhcCC-CCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 038748 209 ILLEGWEKERDVANAKKTFGEMVIEVGW-DPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEEC 287 (482)
Q Consensus 209 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 287 (482)
.+...+.+.|++++|+++++.... .. .|++...|..+....... ++++.|.+.++++...+.. +...+..++..
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~--~~~~~~~~~~~~~~a~La~~~-~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l- 87 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQ--KIAPPDDPEYWRLLADLAWSL-GDYDEAIEAYEKLLASDKA-NPQDYERLIQL- 87 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccc--ccccccccccccccccccccc-ccccccccccccccccccc-ccccccccccc-
Confidence 446667777777777777754432 22 354554555545455555 7788888888877765432 44556666665
Q ss_pred HhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHhhHHHHHHHHHhcCCHHH
Q 038748 288 LTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNG-AFPDIQTYNILFEFLVKGRKLWE 366 (482)
Q Consensus 288 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~g~~~~ 366 (482)
...+++++|.+++....++ .++...+..++..+...++++++..+++.+.... ...+...|..+...+.+.|+.++
T Consensus 88 ~~~~~~~~A~~~~~~~~~~---~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~ 164 (280)
T PF13429_consen 88 LQDGDPEEALKLAEKAYER---DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDK 164 (280)
T ss_dssp ---------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHH
T ss_pred ccccccccccccccccccc---ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 6778888888887766422 3455666777778888888888888888876543 23466677777788888888888
Q ss_pred HHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 038748 367 ASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAE 446 (482)
Q Consensus 367 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 446 (482)
|...+++.++..+. |....+.++..+...|+.+++.++++...+.. +.|...+..+..+|...|+.++|+.+|++...
T Consensus 165 A~~~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~ 242 (280)
T PF13429_consen 165 ALRDYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALK 242 (280)
T ss_dssp HHHHHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccc
Confidence 88888888875433 46677788888888888888888888877653 45556777888888888888888888888877
Q ss_pred cCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHh
Q 038748 447 KGIQVTPFALSKLKQILIKARKEAVYEELLKKCK 480 (482)
Q Consensus 447 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 480 (482)
.. +.|+.+...+..++...|+.++|.++.++.-
T Consensus 243 ~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 243 LN-PDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HS-TT-HHHHHHHHHHHT----------------
T ss_pred cc-ccccccccccccccccccccccccccccccc
Confidence 54 3477888888888888888888888776643
No 34
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.64 E-value=2.9e-12 Score=120.16 Aligned_cols=298 Identities=10% Similarity=-0.041 Sum_probs=184.5
Q ss_pred HHHHHHHH--HhhCChhhHHHHHHHHHhcCCCCCH-hhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCH--HHHHHHHH
Q 038748 138 FASVFSSY--VVADRVKDAITTFDVMEQYGCKHDV-FALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDN--DTYAILLE 212 (482)
Q Consensus 138 ~~~li~~~--~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~l~~ 212 (482)
+..+.++. ...|+++.|.+.+....+.. |+. ..+-....++.+.|+.+.|.+.++...+.. |+. ........
T Consensus 85 ~~~~~~glla~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~-p~~~l~~~~~~a~ 161 (409)
T TIGR00540 85 QKQTEEALLKLAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA-GNDNILVEIARTR 161 (409)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CcCchHHHHHHHH
Confidence 33344443 34588888888887776643 433 233344566777788888888888865432 332 33444577
Q ss_pred HHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH---Hh
Q 038748 213 GWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEEC---LT 289 (482)
Q Consensus 213 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~---~~ 289 (482)
.+...|+++.|...++.+.+. .|++..+...+...+... |++++|.+.+..+.+.+..++......-..++ ..
T Consensus 162 l~l~~~~~~~Al~~l~~l~~~---~P~~~~~l~ll~~~~~~~-~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~ 237 (409)
T TIGR00540 162 ILLAQNELHAARHGVDKLLEM---APRHKEVLKLAEEAYIRS-GAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLD 237 (409)
T ss_pred HHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 778888888888888888743 677777888888888888 88888888888888876443322211111111 22
Q ss_pred cCChhHHHHHHHHhhccc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhh---HHHHHHHHHhcCCH
Q 038748 290 GQNLRGAEFIWGAMVGRI--GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQT---YNILFEFLVKGRKL 364 (482)
Q Consensus 290 ~g~~~~a~~~~~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~---~~~ll~~~~~~g~~ 364 (482)
.+..+.+.+.+..+.+.. ....+...+..+...+...|+.++|.+++++..+. .||... ...........++.
T Consensus 238 ~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~ 315 (409)
T TIGR00540 238 EAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDN 315 (409)
T ss_pred HHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCCh
Confidence 222222222333332111 01236777777888888888888888888888775 233331 11111222334666
Q ss_pred HHHHHHHHHHHhCCCccCh--hhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 038748 365 WEASGLFNEMVKNENVLNH--ENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAK 442 (482)
Q Consensus 365 ~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 442 (482)
+.+.+.++...+.... |. ....++...|.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.++++
T Consensus 316 ~~~~~~~e~~lk~~p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~ 394 (409)
T TIGR00540 316 EKLEKLIEKQAKNVDD-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQ 394 (409)
T ss_pred HHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7777777776664322 33 44556777777778888888877754333345777667777777777788777777777
Q ss_pred HHH
Q 038748 443 GMA 445 (482)
Q Consensus 443 ~m~ 445 (482)
+..
T Consensus 395 ~~l 397 (409)
T TIGR00540 395 DSL 397 (409)
T ss_pred HHH
Confidence 653
No 35
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.64 E-value=2.3e-12 Score=120.84 Aligned_cols=300 Identities=10% Similarity=0.025 Sum_probs=214.7
Q ss_pred hHHHHHHHHh--hCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHH
Q 038748 103 AWNLVVDLLG--KNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAI 180 (482)
Q Consensus 103 ~~~~li~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 180 (482)
.+..+..++. ..|+++.|.+.+....+..+.....+-....+..+.|+++.|.+.+....+....+.....-.....+
T Consensus 84 ~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~ 163 (409)
T TIGR00540 84 AQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRIL 163 (409)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHH
Confidence 4444444443 47999999999988877655444555666778888899999999999987753222223344457888
Q ss_pred HhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHH----HHHHHHccCC
Q 038748 181 CRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDS----YLITLLKGCD 256 (482)
Q Consensus 181 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~----l~~~~~~~~~ 256 (482)
...|+++.|...++.+.+..+.+..++..+...+...|++++|.+.+..+.+. +..+ ...+.. ........ +
T Consensus 164 l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~-~~~~--~~~~~~l~~~a~~~~l~~-~ 239 (409)
T TIGR00540 164 LAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKA-GLFD--DEEFADLEQKAEIGLLDE-A 239 (409)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc-CCCC--HHHHHHHHHHHHHHHHHH-H
Confidence 88999999999999988776778889999999999999999999999999864 3322 222211 11111222 2
Q ss_pred ChHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHH---HHHHHHHHHhcCCHH
Q 038748 257 GIYETVNSLKRMMERGC---NPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHM---YNMMISLYCYSNETG 330 (482)
Q Consensus 257 ~~~~a~~~~~~m~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~---~~~li~~~~~~~~~~ 330 (482)
..++..+.+..+.+... +.+...+..+...+...|+.++|.+++++..++ .||... ...........++.+
T Consensus 240 ~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~ 316 (409)
T TIGR00540 240 MADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNE 316 (409)
T ss_pred HHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChH
Confidence 33333445555544321 137788888999999999999999999999743 344331 122222234457888
Q ss_pred HHHHHHHHHHHCCCCCCH---hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHH
Q 038748 331 AAMKLLDEMVYNGAFPDI---QTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWK 407 (482)
Q Consensus 331 ~a~~~~~~m~~~g~~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 407 (482)
.+.+.++...+. .|+. ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.++|+
T Consensus 317 ~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~ 394 (409)
T TIGR00540 317 KLEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQ 394 (409)
T ss_pred HHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 899998887765 3443 45567888899999999999999965444457888889999999999999999999999
Q ss_pred HHHH
Q 038748 408 YMIE 411 (482)
Q Consensus 408 ~m~~ 411 (482)
+...
T Consensus 395 ~~l~ 398 (409)
T TIGR00540 395 DSLG 398 (409)
T ss_pred HHHH
Confidence 8653
No 36
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.63 E-value=2.6e-15 Score=133.77 Aligned_cols=253 Identities=15% Similarity=0.125 Sum_probs=72.9
Q ss_pred hcCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHH
Q 038748 77 SYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAIT 156 (482)
Q Consensus 77 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 156 (482)
..|+++.|+++++........+.|+..|..+.......++++.|++.++++...+..+...+..++.. ...+++++|.+
T Consensus 20 ~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~ 98 (280)
T PF13429_consen 20 QRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALK 98 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc
Confidence 34566666666643222111233344444444455555666666666666665554444455555555 45666666666
Q ss_pred HHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhc
Q 038748 157 TFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDG--RIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEV 234 (482)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 234 (482)
+++..-+.. ++...+..++..+.+.++++++..+++.+.. ..+.+...|..+...+.+.|+.++|++.+++..+.
T Consensus 99 ~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~- 175 (280)
T PF13429_consen 99 LAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL- 175 (280)
T ss_dssp ---------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-
T ss_pred ccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-
Confidence 665544332 3444555555666666666666666665432 23445556666666666666666666666666533
Q ss_pred CCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHH
Q 038748 235 GWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTH 314 (482)
Q Consensus 235 ~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 314 (482)
.|++......++..++.. |+.+++.++++...+.. +.|...+..+..++...|+.++|..+|+...+.. +.|..
T Consensus 176 --~P~~~~~~~~l~~~li~~-~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~--p~d~~ 249 (280)
T PF13429_consen 176 --DPDDPDARNALAWLLIDM-GDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN--PDDPL 249 (280)
T ss_dssp ---TT-HHHHHHHHHHHCTT-CHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS--TT-HH
T ss_pred --CCCCHHHHHHHHHHHHHC-CChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc--ccccc
Confidence 555555566666666655 66666555555555442 2333444555555556666666666666554211 23455
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Q 038748 315 MYNMMISLYCYSNETGAAMKLLDEM 339 (482)
Q Consensus 315 ~~~~li~~~~~~~~~~~a~~~~~~m 339 (482)
+...+..++...|+.++|..+..+.
T Consensus 250 ~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 250 WLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHHHT---------------
T ss_pred ccccccccccccccccccccccccc
Confidence 5555555566666666665555443
No 37
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.61 E-value=1.9e-12 Score=113.66 Aligned_cols=376 Identities=13% Similarity=0.047 Sum_probs=237.4
Q ss_pred chhHhHHhhhhhcC-CCCCCC--HhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHH
Q 038748 81 PGPAVKFFRWSAYQ-LNDKHS--PYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITT 157 (482)
Q Consensus 81 ~~~a~~~~~~~~~~-~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 157 (482)
+..|+++++....+ ++...+ ....+.+--.+.+.|.++.|+.-|+...+..+.-...||..| ++..-|+-++..+.
T Consensus 253 fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i-~~f~i~d~ekmkea 331 (840)
T KOG2003|consen 253 FSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLII-CAFAIGDAEKMKEA 331 (840)
T ss_pred HHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCccHHhhhhhhh-hheecCcHHHHHHH
Confidence 46788888876664 222222 234555555677889999999999998887643344455544 44456888888888
Q ss_pred HHHHHhcCCCCC------------HhhHHHHHH-----HHHhcC--ChHhHHHHHHHhhC-CCCCCHHH-----------
Q 038748 158 FDVMEQYGCKHD------------VFALNSLLS-----AICRDG--KTIDAWQFLRVVDG-RIKPDNDT----------- 206 (482)
Q Consensus 158 ~~~~~~~~~~~~------------~~~~~~ll~-----~~~~~g--~~~~a~~~~~~~~~-~~~~~~~~----------- 206 (482)
|.+|+.....|| ....|..+. -.-+.+ +.++++-.--.+.. -+.|+-..
T Consensus 332 f~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~ 411 (840)
T KOG2003|consen 332 FQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKA 411 (840)
T ss_pred HHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHH
Confidence 998876432222 222222221 111111 11222111111111 12222110
Q ss_pred --H--------HHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHH-------------------------
Q 038748 207 --Y--------AILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITL------------------------- 251 (482)
Q Consensus 207 --~--------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~------------------------- 251 (482)
+ -.-.--|.+.|+++.|.+++.-+.++..-.. +..+-|.-+..+
T Consensus 412 s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~-saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~ 490 (840)
T KOG2003|consen 412 SQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTA-SAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNA 490 (840)
T ss_pred hhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhh-HHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCH
Confidence 0 0112347788888888888877654311111 111111111111
Q ss_pred ----------HccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCC-CCCHHHHHHHH
Q 038748 252 ----------LKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGF-RPDTHMYNMMI 320 (482)
Q Consensus 252 ----------~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~li 320 (482)
+.. |++++|.+.|++.....-.-....|+. .-.+-..|++++|++.|-.+. ++ .-+..+...+.
T Consensus 491 ~a~~nkgn~~f~n-gd~dka~~~ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh---~il~nn~evl~qia 565 (840)
T KOG2003|consen 491 AALTNKGNIAFAN-GDLDKAAEFYKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLH---AILLNNAEVLVQIA 565 (840)
T ss_pred HHhhcCCceeeec-CcHHHHHHHHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHH---HHHHhhHHHHHHHH
Confidence 222 788888888888876543323333333 224566788999988887763 22 33566677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChH
Q 038748 321 SLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPY 400 (482)
Q Consensus 321 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 400 (482)
..|-...+...|++++.+.... ++-|+.....|...|-+.|+-..|.+++-+--. -++.+..+..-|...|....-++
T Consensus 566 niye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~ayyidtqf~e 643 (840)
T KOG2003|consen 566 NIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAAYYIDTQFSE 643 (840)
T ss_pred HHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHHHHHhhHHHH
Confidence 8888888888999888776554 455778888888999999999888887655433 24557777777888888888899
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHH-HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcc
Q 038748 401 VAIKFWKYMIENHCSDLSETGNLLVAG-LCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARK 468 (482)
Q Consensus 401 ~a~~~~~~m~~~~~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 468 (482)
+++.+|+...- +.|+..-|..++.. +.+.|++++|+++++...++ ++-|...+..|++.+...|.
T Consensus 644 kai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 644 KAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 99999988765 78999999998855 45789999999999998665 55678888888888777664
No 38
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.60 E-value=3.6e-11 Score=104.33 Aligned_cols=290 Identities=10% Similarity=0.002 Sum_probs=222.7
Q ss_pred hCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 038748 148 ADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVANAKKT 226 (482)
Q Consensus 148 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~ 226 (482)
.|+|.+|++...+-.+.+-.| ...|..-..+.-+.|+.+.+-.++.+..+. ..++...+-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 488888888888877766443 344555566777788888888888886652 355666677777888888888888888
Q ss_pred HHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCC-------HHHHHHHHHHHHhcCChhHHHHH
Q 038748 227 FGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPG-------MTFFKLAFEECLTGQNLRGAEFI 299 (482)
Q Consensus 227 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~-------~~~~~~li~~~~~~g~~~~a~~~ 299 (482)
++++. +..|.++........+|... |++..+..++..|.+.|.--+ ..+|..+++-+...+..+.-...
T Consensus 176 v~~ll---~~~pr~~~vlrLa~r~y~~~-g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~ 251 (400)
T COG3071 176 VDQLL---EMTPRHPEVLRLALRAYIRL-GAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTW 251 (400)
T ss_pred HHHHH---HhCcCChHHHHHHHHHHHHh-ccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHH
Confidence 88876 34666677888888888888 888888888888888775544 35677777777777777777788
Q ss_pred HHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 038748 300 WGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNEN 379 (482)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 379 (482)
|+....+ ..-++..-.+++.-+.++|+.++|.++..+..+++..|. -...-.+.+.++.+.-.+..++-.+...
T Consensus 252 W~~~pr~--lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~ 325 (400)
T COG3071 252 WKNQPRK--LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHP 325 (400)
T ss_pred HHhccHH--hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCC
Confidence 8887533 344566667788889999999999999999999877666 2223345677888888887777666533
Q ss_pred ccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 038748 380 VLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQV 451 (482)
Q Consensus 380 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 451 (482)
. ++..+.+|...|.+.+.+.+|.+.|+...+ ..|+..+|+.+..+|.+.|+.++|.+++++....-.+|
T Consensus 326 ~-~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~ 394 (400)
T COG3071 326 E-DPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQP 394 (400)
T ss_pred C-ChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCC
Confidence 3 557888999999999999999999997776 56899999999999999999999999999876443333
No 39
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=7.5e-11 Score=104.10 Aligned_cols=361 Identities=13% Similarity=0.006 Sum_probs=241.8
Q ss_pred CCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhH-HHH
Q 038748 98 KHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFAL-NSL 176 (482)
Q Consensus 98 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l 176 (482)
..|...+-...-.+-+.|....|.+.|......-+-...+|..|...+.. +++.......+..-+.... -.+
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~-------~e~~~~l~~~l~~~~h~M~~~F~ 233 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITD-------IEILSILVVGLPSDMHWMKKFFL 233 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhch-------HHHHHHHHhcCcccchHHHHHHH
Confidence 34444444444555567778888888888777766666666666554432 2222222221111011111 123
Q ss_pred HHHHHhcCChHhHHHHHHHhhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccC
Q 038748 177 LSAICRDGKTIDAWQFLRVVDG-RIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255 (482)
Q Consensus 177 l~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 255 (482)
..++-.....+++.+-.+.... |++.+...-+....+.....|+++|+.+|+++.+.....-++..+|..++-..-..
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~- 312 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK- 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh-
Confidence 3455555667777665555443 66666666666667777888999999999999865334445666776655443222
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 038748 256 DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRP-DTHMYNMMISLYCYSNETGAAMK 334 (482)
Q Consensus 256 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~ 334 (482)
..+..+.+-...--+--+.|.-.+.+.|.-.++.++|...|++.+ .+.| ....|+.+-.-|....+...|.+
T Consensus 313 ----skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRAL---kLNp~~~~aWTLmGHEyvEmKNt~AAi~ 385 (559)
T KOG1155|consen 313 ----SKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRAL---KLNPKYLSAWTLMGHEYVEMKNTHAAIE 385 (559)
T ss_pred ----HHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHH---hcCcchhHHHHHhhHHHHHhcccHHHHH
Confidence 112222211111011223456677788888899999999999987 2344 35678888888999999999999
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCC
Q 038748 335 LLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHC 414 (482)
Q Consensus 335 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 414 (482)
-++...+-.. -|-..|..+.++|.-.+...=|+-+|++..+..+. |...|.+|..+|.+.++.++|++.|+.....|-
T Consensus 386 sYRrAvdi~p-~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d 463 (559)
T KOG1155|consen 386 SYRRAVDINP-RDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAILLGD 463 (559)
T ss_pred HHHHHHhcCc-hhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHhccc
Confidence 9999988643 37788999999999999999999999999886543 788899999999999999999999999887652
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHH----cCCCCCH--HHHHHHHHHHHHhccHHHHHHHH
Q 038748 415 SDLSETGNLLVAGLCDMHMLPEAVKYAKGMAE----KGIQVTP--FALSKLKQILIKARKEAVYEELL 476 (482)
Q Consensus 415 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~ 476 (482)
.+...+..|.+.|-+.++.++|...|++..+ .|...+. ....-|..-+.+.+++++|....
T Consensus 464 -te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya 530 (559)
T KOG1155|consen 464 -TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYA 530 (559)
T ss_pred -cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHH
Confidence 3557888999999999999999988887654 2333221 23333556677888887776543
No 40
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.59 E-value=1.2e-11 Score=104.05 Aligned_cols=286 Identities=12% Similarity=0.048 Sum_probs=154.4
Q ss_pred CCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCH------hhHHHHHHHHHhcCChH
Q 038748 114 NCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDV------FALNSLLSAICRDGKTI 187 (482)
Q Consensus 114 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~ll~~~~~~g~~~ 187 (482)
+++.++|+++|-+|.+.++.+.++.-+|.+.|.+.|..+.|+.+.+.+.++ ||. .....|..-|...|-+|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 467888888888888877777777888888888888888888888888774 332 23344556667777788
Q ss_pred hHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCC---hhhHHHHHHHHHccCCChHHHHHH
Q 038748 188 DAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDN---VPAYDSYLITLLKGCDGIYETVNS 264 (482)
Q Consensus 188 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~---~~~~~~l~~~~~~~~~~~~~a~~~ 264 (482)
.|+.+|..+.....--......|+..|....+|++|+++-+++.+- +-.+.+ ...|-.+...+... .+.+.|..+
T Consensus 125 RAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~-~~q~~~~eIAqfyCELAq~~~~~-~~~d~A~~~ 202 (389)
T COG2956 125 RAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKL-GGQTYRVEIAQFYCELAQQALAS-SDVDRAREL 202 (389)
T ss_pred HHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHc-CCccchhHHHHHHHHHHHHHhhh-hhHHHHHHH
Confidence 8888887765433334556667777777777777777777766532 222211 11222333333333 444444444
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 038748 265 LKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGA 344 (482)
Q Consensus 265 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 344 (482)
+.+..+.. |+ .+..--.+-+.+...|++++|.+.++...+.+.
T Consensus 203 l~kAlqa~--~~-----------------------------------cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~ 245 (389)
T COG2956 203 LKKALQAD--KK-----------------------------------CVRASIILGRVELAKGDYQKAVEALERVLEQNP 245 (389)
T ss_pred HHHHHhhC--cc-----------------------------------ceehhhhhhHHHHhccchHHHHHHHHHHHHhCh
Confidence 44444322 11 111222233344455555555555555555433
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHH
Q 038748 345 FPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLL 424 (482)
Q Consensus 345 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 424 (482)
.--..+...|..+|.+.|+.++...++..+.+....++ .-..+.+........+.|..++.+-... .|+...+..+
T Consensus 246 ~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~--~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl 321 (389)
T COG2956 246 EYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGAD--AELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRL 321 (389)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCcc--HHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHH
Confidence 33334445555555555555555555555554432222 2222333333333344444444433332 3555555555
Q ss_pred HHHHH---hcCChhHHHHHHHHHH
Q 038748 425 VAGLC---DMHMLPEAVKYAKGMA 445 (482)
Q Consensus 425 i~~~~---~~g~~~~A~~~~~~m~ 445 (482)
|..-. ..|...+-+.+++.|.
T Consensus 322 ~~~~l~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 322 MDYHLADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred HHhhhccccccchhhhHHHHHHHH
Confidence 54432 1233444444445443
No 41
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.58 E-value=2.3e-10 Score=101.35 Aligned_cols=394 Identities=8% Similarity=-0.022 Sum_probs=276.6
Q ss_pred hhcCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHH
Q 038748 76 FSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAI 155 (482)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 155 (482)
..+++.+.|..+|+.+.. ....+...|-..+..=.+++.+..|..++++....-+--...|...+..=-..|++..|.
T Consensus 84 esq~e~~RARSv~ERALd--vd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaR 161 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALD--VDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGAR 161 (677)
T ss_pred HhHHHHHHHHHHHHHHHh--cccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHH
Confidence 346777899999998887 667788889999999999999999999999988875544455666666666779999999
Q ss_pred HHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcC
Q 038748 156 TTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVG 235 (482)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 235 (482)
++|+...+ ..|+...|++.|+.=.+...++.|..+|+...- +.|++.+|--....--+.|+...|..+|+......|
T Consensus 162 qiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~-~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~ 238 (677)
T KOG1915|consen 162 QIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVL-VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLG 238 (677)
T ss_pred HHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe-ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh
Confidence 99999877 479999999999999999999999999999653 359999999998888899999999999888775433
Q ss_pred CCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHc-------------------------------------------C
Q 038748 236 WDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMER-------------------------------------------G 272 (482)
Q Consensus 236 ~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~-------------------------------------------~ 272 (482)
-.-.+...+.++...-... ..++.|.-+|+-.++. .
T Consensus 239 ~d~~~e~lfvaFA~fEe~q-kE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~ 317 (677)
T KOG1915|consen 239 DDEEAEILFVAFAEFEERQ-KEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK 317 (677)
T ss_pred hHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh
Confidence 3221122222222211122 3333333333322211 0
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHH-------HHHHHHHHH---HhcCCHHHHHHHHHHHHHC
Q 038748 273 CNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTH-------MYNMMISLY---CYSNETGAAMKLLDEMVYN 342 (482)
Q Consensus 273 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-------~~~~li~~~---~~~~~~~~a~~~~~~m~~~ 342 (482)
.+-|-.+|--.+..--..|+.+...++|+..+ .+++|-.. +|--+--++ ....+++.+.++|+...+.
T Consensus 318 np~nYDsWfdylrL~e~~g~~~~Ire~yErAI--anvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l 395 (677)
T KOG1915|consen 318 NPYNYDSWFDYLRLEESVGDKDRIRETYERAI--ANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL 395 (677)
T ss_pred CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHH--ccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 12233444445555556788888888888875 34455211 121111111 2356778888888877773
Q ss_pred CCCCCHhhHHHHHHHH----HhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCh
Q 038748 343 GAFPDIQTYNILFEFL----VKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLS 418 (482)
Q Consensus 343 g~~p~~~~~~~ll~~~----~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 418 (482)
++-...||..+=-.| .+..++..|.+++...+. .-|-..+|...|..-.+.++++.+.++++..++.+ +-|.
T Consensus 396 -IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c 471 (677)
T KOG1915|consen 396 -IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENC 471 (677)
T ss_pred -cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhh
Confidence 333445554443333 456788888888887754 56677888888888888899999999999988854 2345
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHhh
Q 038748 419 ETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI-QVTPFALSKLKQILIKARKEAVYEELLKKCKA 481 (482)
Q Consensus 419 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 481 (482)
.+|.-....=...|+.+.|..+|+-.+.... ......|.+.|..=...|.++.|..+++++.+
T Consensus 472 ~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~ 535 (677)
T KOG1915|consen 472 YAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLD 535 (677)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHH
Confidence 7787777777788999999999988876542 23345677777777888999999999988765
No 42
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.56 E-value=2.6e-09 Score=98.50 Aligned_cols=385 Identities=11% Similarity=0.039 Sum_probs=221.3
Q ss_pred chhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHH----HhcCC-CCHHHHHHHHHHHHhhCChhhHH
Q 038748 81 PGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSM----KKENV-LSLATFASVFSSYVVADRVKDAI 155 (482)
Q Consensus 81 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~----~~~~~-~~~~~~~~li~~~~~~~~~~~a~ 155 (482)
++.|.+++..+.. ..+.+...|-+-...=-.+|+.+...+++++- ...|+ .+...|-.=...|-..|.+-.+.
T Consensus 422 YenAkkvLNkaRe--~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQ 499 (913)
T KOG0495|consen 422 YENAKKVLNKARE--IIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQ 499 (913)
T ss_pred HHHHHHHHHHHHh--hCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHH
Confidence 4556666665554 55666677766666666677777766666543 22333 34444444444444444444444
Q ss_pred HHHHHHHhcCCCC------------------------------------CHhhHHHHHHHHHhcCChHhHHHHHHHhhCC
Q 038748 156 TTFDVMEQYGCKH------------------------------------DVFALNSLLSAICRDGKTIDAWQFLRVVDGR 199 (482)
Q Consensus 156 ~~~~~~~~~~~~~------------------------------------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 199 (482)
.+....+..|+.- +...|......--..|..++...+|++....
T Consensus 500 AIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~ 579 (913)
T KOG0495|consen 500 AIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ 579 (913)
T ss_pred HHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 4444444433321 2333333333333344455555555554444
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHH
Q 038748 200 IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTF 279 (482)
Q Consensus 200 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 279 (482)
++.....|.....-+-..|++..|..++.+... ..|.+...|-.-+..-..+ ..++.|..+|.+... ..|+...
T Consensus 580 ~pkae~lwlM~ake~w~agdv~~ar~il~~af~---~~pnseeiwlaavKle~en-~e~eraR~llakar~--~sgTeRv 653 (913)
T KOG0495|consen 580 CPKAEILWLMYAKEKWKAGDVPAARVILDQAFE---ANPNSEEIWLAAVKLEFEN-DELERARDLLAKARS--ISGTERV 653 (913)
T ss_pred CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHH---hCCCcHHHHHHHHHHhhcc-ccHHHHHHHHHHHhc--cCCcchh
Confidence 444444555555555555666666666655542 2454555555555555555 666666666665554 3355555
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhcccCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-hhHHHHHHH
Q 038748 280 FKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD-THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDI-QTYNILFEF 357 (482)
Q Consensus 280 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~ 357 (482)
|.--+..-.-.++.++|.+++++.++. -|+ ...|-.+-..+-+.++++.|.+.|..-.+. .|+. ..|-.+...
T Consensus 654 ~mKs~~~er~ld~~eeA~rllEe~lk~---fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~--cP~~ipLWllLakl 728 (913)
T KOG0495|consen 654 WMKSANLERYLDNVEEALRLLEEALKS---FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK--CPNSIPLWLLLAKL 728 (913)
T ss_pred hHHHhHHHHHhhhHHHHHHHHHHHHHh---CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc--CCCCchHHHHHHHH
Confidence 555555555566666666666666522 232 334555555566666666666665544332 3443 334444455
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCC---------------------
Q 038748 358 LVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSD--------------------- 416 (482)
Q Consensus 358 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p--------------------- 416 (482)
-.+.|.+-+|..+++...-.++. +...|...|+.-.+.|+.+.|..+..+..+. ++.
T Consensus 729 eEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks 806 (913)
T KOG0495|consen 729 EEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKS 806 (913)
T ss_pred HHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHH
Confidence 55677888888888887776655 7778888888888888888888877766542 111
Q ss_pred ---------ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHhh
Q 038748 417 ---------LSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKCKA 481 (482)
Q Consensus 417 ---------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 481 (482)
|.+..-.+...|....++++|.+.|.+....+. -+..+|..+...+.+.|..+.-.++++++..
T Consensus 807 ~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~-d~GD~wa~fykfel~hG~eed~kev~~~c~~ 879 (913)
T KOG0495|consen 807 IDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDP-DNGDAWAWFYKFELRHGTEEDQKEVLKKCET 879 (913)
T ss_pred HHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCC-ccchHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 222223334445566677778888887776652 2456777777777888877777777776643
No 43
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.56 E-value=6e-10 Score=98.80 Aligned_cols=356 Identities=10% Similarity=0.080 Sum_probs=243.6
Q ss_pred cCCchhHhHHhh-hhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHH
Q 038748 78 YSHPGPAVKFFR-WSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAIT 156 (482)
Q Consensus 78 ~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 156 (482)
.|+...|.++|. || ...|+..+|++.|..=.+-+..+.|..+|++..--. |....|-....-=-++|++..|..
T Consensus 154 LgNi~gaRqiferW~----~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~H-P~v~~wikyarFE~k~g~~~~aR~ 228 (677)
T KOG1915|consen 154 LGNIAGARQIFERWM----EWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVH-PKVSNWIKYARFEEKHGNVALARS 228 (677)
T ss_pred hcccHHHHHHHHHHH----cCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheec-ccHHHHHHHHHHHHhcCcHHHHHH
Confidence 466777777777 55 456778888888888778788888888887776544 666667776666677788888888
Q ss_pred HHHHHHhc-CC-CCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHH------
Q 038748 157 TFDVMEQY-GC-KHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPD--NDTYAILLEGWEKERDVANAKKT------ 226 (482)
Q Consensus 157 ~~~~~~~~-~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~------ 226 (482)
+|+...+. |- ..+...+++....=.++..++.|.-+|+-....++.+ ...|......--+-|+....++.
T Consensus 229 VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk 308 (677)
T KOG1915|consen 229 VYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRK 308 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhh
Confidence 87776653 21 0112223333333335566777777777655545544 55566665555566665554443
Q ss_pred --HHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCH--HHHHH----HHHH-H---HhcCChh
Q 038748 227 --FGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGM--TFFKL----AFEE-C---LTGQNLR 294 (482)
Q Consensus 227 --~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~----li~~-~---~~~g~~~ 294 (482)
++.+.+ -.|-|..+|-..+...-.. |+.+...++|+..+.. ++|-. ..|.. .|+. | ....+++
T Consensus 309 ~qYE~~v~---~np~nYDsWfdylrL~e~~-g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~e 383 (677)
T KOG1915|consen 309 FQYEKEVS---KNPYNYDSWFDYLRLEESV-GDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVE 383 (677)
T ss_pred hHHHHHHH---hCCCCchHHHHHHHHHHhc-CCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 233332 3566777888888877777 9999999999998875 44421 11111 1222 1 2468888
Q ss_pred HHHHHHHHhhcccCCCCCHHHHHHHHHHH----HhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 038748 295 GAEFIWGAMVGRIGFRPDTHMYNMMISLY----CYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGL 370 (482)
Q Consensus 295 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~----~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~ 370 (482)
.+.++++..++ -++-...||.-+--.| .++.++..|.+++.... |..|-..+|..-|..-.+.++++.+..+
T Consensus 384 rtr~vyq~~l~--lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkL 459 (677)
T KOG1915|consen 384 RTRQVYQACLD--LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKL 459 (677)
T ss_pred HHHHHHHHHHh--hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHH
Confidence 99999988872 2333445554443333 46788899999888766 5678888999888888899999999999
Q ss_pred HHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcC-CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 038748 371 FNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENH-CSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448 (482)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 448 (482)
+++.++.++. +..+|......-...|+.+.|..+|.-.+... +......|-..|.-=...|.++.|..+++++.+..
T Consensus 460 YEkfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt 537 (677)
T KOG1915|consen 460 YEKFLEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT 537 (677)
T ss_pred HHHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc
Confidence 9999997765 77788888888888899999999999888642 22223566666766678899999999999987654
No 44
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.56 E-value=3.1e-12 Score=117.81 Aligned_cols=287 Identities=11% Similarity=0.017 Sum_probs=189.3
Q ss_pred ChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCC---CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 038748 150 RVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR---IKPDNDTYAILLEGWEKERDVANAKKT 226 (482)
Q Consensus 150 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~ 226 (482)
+.++|+..|+...+. +.-+..+...+..+|...+++++|+.+|+.++.. .--+..+|.+.+--+.+ +-++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 566777777775443 2223355566777788888888888888877652 23466777777665432 222222
Q ss_pred HHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhc
Q 038748 227 FGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNP-GMTFFKLAFEECLTGQNLRGAEFIWGAMVG 305 (482)
Q Consensus 227 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 305 (482)
+.+-. ....|+++.+|-++.++|.-. ++.+.|++.|++..+. .| ...+|+.+..-+.....+|.|...|...+
T Consensus 409 Laq~L--i~~~~~sPesWca~GNcfSLQ-kdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al- 482 (638)
T KOG1126|consen 409 LAQDL--IDTDPNSPESWCALGNCFSLQ-KDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKAL- 482 (638)
T ss_pred HHHHH--HhhCCCCcHHHHHhcchhhhh-hHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhh-
Confidence 22221 133555667888877777777 8888888888877764 34 56777777777777788888888887776
Q ss_pred ccCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChh
Q 038748 306 RIGFRPD-THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHE 384 (482)
Q Consensus 306 ~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 384 (482)
++.|. -..|..|...|.+.++++.|+-.|++..+-+.. +.+....+...+.+.|+.++|++++++....... |+.
T Consensus 483 --~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l 558 (638)
T KOG1126|consen 483 --GVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPL 558 (638)
T ss_pred --cCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-Cch
Confidence 22222 223444566777888888888888887775433 4556666667777788888888888887776544 333
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH
Q 038748 385 NCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLS-ETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTP 453 (482)
Q Consensus 385 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 453 (482)
.--.-+..+...+++++|+..++++++ +.|+. ..|..+...|.+.|+.+.|+.-|.-+.+.+.++..
T Consensus 559 ~~~~~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 559 CKYHRASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred hHHHHHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 333445556667888888888888877 44554 56666677788888888888888777766544443
No 45
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.55 E-value=9.2e-10 Score=101.44 Aligned_cols=335 Identities=6% Similarity=-0.068 Sum_probs=252.0
Q ss_pred hhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHH
Q 038748 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAIC 181 (482)
Q Consensus 102 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 181 (482)
.+|..-.+.|.+.+.++-|..+|....+-.+-....|......=-..|..+....+|++....- +-....|-....-+.
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w 595 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKW 595 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHH
Confidence 4566666677777777777777777777766666777777766666788888888888887753 234455666667777
Q ss_pred hcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHH
Q 038748 182 RDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYET 261 (482)
Q Consensus 182 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a 261 (482)
..|+...|..++...-...+.+..+|...+..-.....++.|..+|.+... ..| +...|.--+..-.-. +..++|
T Consensus 596 ~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~---~sg-TeRv~mKs~~~er~l-d~~eeA 670 (913)
T KOG0495|consen 596 KAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARS---ISG-TERVWMKSANLERYL-DNVEEA 670 (913)
T ss_pred hcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc---cCC-cchhhHHHhHHHHHh-hhHHHH
Confidence 889999999998886655566888999999999999999999999988864 344 344554444444445 889999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038748 262 VNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVY 341 (482)
Q Consensus 262 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 341 (482)
++++++..+. ++.-...|..+.+.+-+.++++.|...|..-. ..++-.+..|-.|...=-+.|.+-+|..+++...-
T Consensus 671 ~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~--k~cP~~ipLWllLakleEk~~~~~rAR~ildrarl 747 (913)
T KOG0495|consen 671 LRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGT--KKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARL 747 (913)
T ss_pred HHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcc--ccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHh
Confidence 9999888774 22234567777788888888998888887654 23444566787787777888889999999988887
Q ss_pred CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----C-------------------------CccChhhHHHHHHH
Q 038748 342 NGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKN----E-------------------------NVLNHENCRAAVRV 392 (482)
Q Consensus 342 ~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~-------------------------~~~~~~~~~~li~~ 392 (482)
++.+ +...|-..|+.-.+.|+.+.|..++.+.++. | +.-|++....+...
T Consensus 748 kNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~l 826 (913)
T KOG0495|consen 748 KNPK-NALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKL 826 (913)
T ss_pred cCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHH
Confidence 7554 7788888888888999988888777666543 1 23355666677777
Q ss_pred HhcCCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 038748 393 YMDSDDPYVAIKFWKYMIENHCSDLS-ETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448 (482)
Q Consensus 393 ~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 448 (482)
+....++++|.+.|....+.+ ||. .+|.-+...+.+.|.-++-.+++.......
T Consensus 827 fw~e~k~~kar~Wf~Ravk~d--~d~GD~wa~fykfel~hG~eed~kev~~~c~~~E 881 (913)
T KOG0495|consen 827 FWSEKKIEKAREWFERAVKKD--PDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAE 881 (913)
T ss_pred HHHHHHHHHHHHHHHHHHccC--CccchHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 888889999999999998854 444 789889999999999999999998886553
No 46
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.55 E-value=3.8e-12 Score=117.27 Aligned_cols=288 Identities=11% Similarity=0.069 Sum_probs=219.8
Q ss_pred CCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcC--CCCCHhhHHHHHHHHHhcCChHhHHHH
Q 038748 115 CLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYG--CKHDVFALNSLLSAICRDGKTIDAWQF 192 (482)
Q Consensus 115 ~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~ 192 (482)
-+..+|..+|..+.....-+..+...+..+|...+++++|.++|+.+.+.. ..-+..+|.+.+.-+-+ +-++..
T Consensus 333 y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 356789999999766655555777888999999999999999999998752 12266778877654422 122222
Q ss_pred H-HHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHc
Q 038748 193 L-RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMER 271 (482)
Q Consensus 193 ~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~ 271 (482)
+ +.+....+-.+.+|.++.++|.-+++.+.|++.|++.. .++|....+|+.+..-+... ..+|.|...|+.....
T Consensus 409 Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAi---Qldp~faYayTLlGhE~~~~-ee~d~a~~~fr~Al~~ 484 (638)
T KOG1126|consen 409 LAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAI---QLDPRFAYAYTLLGHESIAT-EEFDKAMKSFRKALGV 484 (638)
T ss_pred HHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhh---ccCCccchhhhhcCChhhhh-HHHHhHHHHHHhhhcC
Confidence 2 33444456778899999999999999999999999986 67887788898888888888 9999999999987653
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhh
Q 038748 272 GCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRP-DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQT 350 (482)
Q Consensus 272 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 350 (482)
. +-+-..|.-+...|.+.++++.|+-.|+..+ .+.| +.+....+...+.+.|+.++|+.+|++......+ |...
T Consensus 485 ~-~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~ 559 (638)
T KOG1126|consen 485 D-PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLC 559 (638)
T ss_pred C-chhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-Cchh
Confidence 1 1122344456678899999999999999886 3445 5666777778888999999999999999876544 4444
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCC
Q 038748 351 YNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSD 416 (482)
Q Consensus 351 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 416 (482)
--.....+...++.++|+..++++.+.-+. +...|..+...|-+.|+.+.|+.-|.-+.+.+.++
T Consensus 560 ~~~~~~il~~~~~~~eal~~LEeLk~~vP~-es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 560 KYHRASILFSLGRYVEALQELEELKELVPQ-ESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 444566677789999999999999885322 55667788899999999999999998888755433
No 47
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.54 E-value=9.5e-11 Score=98.80 Aligned_cols=304 Identities=15% Similarity=0.106 Sum_probs=226.4
Q ss_pred CCCCHHHHHHHHHhhcCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCC-C---CHHHH
Q 038748 63 IRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENV-L---SLATF 138 (482)
Q Consensus 63 ~~~~~~~~~~ll~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~---~~~~~ 138 (482)
.+++..-+..+=-....+++.|.+.|-.|.+ ..+-+.++.-+|.+.|-+.|..+.|+.+-..+..+.- + -..+.
T Consensus 33 ~~lsr~Yv~GlNfLLs~Q~dKAvdlF~e~l~--~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl 110 (389)
T COG2956 33 NRLSRDYVKGLNFLLSNQPDKAVDLFLEMLQ--EDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLAL 110 (389)
T ss_pred hhccHHHHhHHHHHhhcCcchHHHHHHHHHh--cCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 3455555544444667899999999999988 6666778888899999999999999999999888753 2 23455
Q ss_pred HHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhC-CCCCC----HHHHHHHHHH
Q 038748 139 ASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDG-RIKPD----NDTYAILLEG 213 (482)
Q Consensus 139 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~~~~----~~~~~~l~~~ 213 (482)
-.|.+-|...|-++.|..+|..+.+.|. --......|+..|-...+|++|+++-+++.+ +..+. ...|.-+...
T Consensus 111 ~qL~~Dym~aGl~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~ 189 (389)
T COG2956 111 QQLGRDYMAAGLLDRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQ 189 (389)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHH
Confidence 6777889999999999999999988543 3456788899999999999999999887654 22222 2346677777
Q ss_pred HHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 038748 214 WEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNL 293 (482)
Q Consensus 214 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 293 (482)
+....+.+.|..++.+..+. .|..+.+--.+....... |++..|++.++...+.+..--..+...+..+|...|+.
T Consensus 190 ~~~~~~~d~A~~~l~kAlqa---~~~cvRAsi~lG~v~~~~-g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~ 265 (389)
T COG2956 190 ALASSDVDRARELLKKALQA---DKKCVRASIILGRVELAK-GDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKP 265 (389)
T ss_pred HhhhhhHHHHHHHHHHHHhh---CccceehhhhhhHHHHhc-cchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCH
Confidence 77889999999999988743 676666666677777788 99999999999998877555567788888999999999
Q ss_pred hHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh---cCCHHHHHHH
Q 038748 294 RGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVK---GRKLWEASGL 370 (482)
Q Consensus 294 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~---~g~~~~a~~~ 370 (482)
++....+..+. +. .++...-..+-.......-.+.|...+.+-... +|+...+..+|..-.. -|...+...+
T Consensus 266 ~~~~~fL~~~~-~~--~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~ 340 (389)
T COG2956 266 AEGLNFLRRAM-ET--NTGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDL 340 (389)
T ss_pred HHHHHHHHHHH-Hc--cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHH
Confidence 99999998886 33 334434444444444444455555555444443 5899999999887644 3445666677
Q ss_pred HHHHHhCC
Q 038748 371 FNEMVKNE 378 (482)
Q Consensus 371 ~~~~~~~~ 378 (482)
++.|+...
T Consensus 341 lr~mvge~ 348 (389)
T COG2956 341 LRDMVGEQ 348 (389)
T ss_pred HHHHHHHH
Confidence 77776543
No 48
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.54 E-value=5.6e-10 Score=97.13 Aligned_cols=300 Identities=8% Similarity=-0.017 Sum_probs=228.4
Q ss_pred HHHHHHHhh--CCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHh
Q 038748 105 NLVVDLLGK--NCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICR 182 (482)
Q Consensus 105 ~~li~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 182 (482)
..+.+++.+ .|+|..|+++..+-.+.+......|..-+.+--+.|+.+.+-.++.+..+..-.++...+-+.......
T Consensus 86 ~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~ 165 (400)
T COG3071 86 KALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLN 165 (400)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHh
Confidence 334444443 799999999999988887766677888888888889999999999999886445667777788888999
Q ss_pred cCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCC------hhhHHHHHHHHHccCC
Q 038748 183 DGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDN------VPAYDSYLITLLKGCD 256 (482)
Q Consensus 183 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~------~~~~~~l~~~~~~~~~ 256 (482)
.|+.+.|..-.+.+....+.+.........+|.+.|++.....++..+.+. +.-.+. ..+|+.++.-.... +
T Consensus 166 ~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka-~~l~~~e~~~le~~a~~glL~q~~~~-~ 243 (400)
T COG3071 166 RRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKA-GLLSDEEAARLEQQAWEGLLQQARDD-N 243 (400)
T ss_pred CCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHc-cCCChHHHHHHHHHHHHHHHHHHhcc-c
Confidence 999999999888877767888899999999999999999999999999864 544321 13566666666666 6
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 038748 257 GIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLL 336 (482)
Q Consensus 257 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 336 (482)
..+.-...++..-.. ..-+...-.+++.-+...|+.++|.++..+.. +.+..|+. . ..-.+.+-++.+.-++..
T Consensus 244 ~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~L-k~~~D~~L---~-~~~~~l~~~d~~~l~k~~ 317 (400)
T COG3071 244 GSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDAL-KRQWDPRL---C-RLIPRLRPGDPEPLIKAA 317 (400)
T ss_pred cchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHH-HhccChhH---H-HHHhhcCCCCchHHHHHH
Confidence 666655666655433 34456667788888999999999999999987 44444441 1 122345667777666666
Q ss_pred HHHHHC-CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCC
Q 038748 337 DEMVYN-GAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCS 415 (482)
Q Consensus 337 ~~m~~~-g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 415 (482)
++-.+. +. ++..+..+-..|.+.+.|.+|...|+...+ ..|+..+|+.+.+++.+.|+.++|.++.++..-.-..
T Consensus 318 e~~l~~h~~--~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~ 393 (400)
T COG3071 318 EKWLKQHPE--DPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQ 393 (400)
T ss_pred HHHHHhCCC--ChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcC
Confidence 655443 33 446788888899999999999999997766 5788999999999999999999999999887643333
Q ss_pred C
Q 038748 416 D 416 (482)
Q Consensus 416 p 416 (482)
|
T Consensus 394 ~ 394 (400)
T COG3071 394 P 394 (400)
T ss_pred C
Confidence 3
No 49
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.51 E-value=7.2e-12 Score=118.68 Aligned_cols=242 Identities=15% Similarity=0.090 Sum_probs=146.4
Q ss_pred CCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhH
Q 038748 95 LNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFAL 173 (482)
Q Consensus 95 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 173 (482)
.|..|+..+|..+|..||..|+.+.|- +|.-|.-+.. .+...++.++.+..+.++.+.+. .|...+|
T Consensus 19 ~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDty 86 (1088)
T KOG4318|consen 19 SGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTY 86 (1088)
T ss_pred hcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHH
Confidence 477788888888888888888888877 8888877775 46677788888777777776665 4777788
Q ss_pred HHHHHHHHhcCChHh---HHHHHHHhhC-----C-----------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038748 174 NSLLSAICRDGKTID---AWQFLRVVDG-----R-----------------IKPDNDTYAILLEGWEKERDVANAKKTFG 228 (482)
Q Consensus 174 ~~ll~~~~~~g~~~~---a~~~~~~~~~-----~-----------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 228 (482)
..|+.+|...||+.. +++.+..+.. | .-||.. ..+....-.|-++.+.+++.
T Consensus 87 t~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~illlv~eglwaqllkll~ 163 (1088)
T KOG4318|consen 87 TNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILLLVLEGLWAQLLKLLA 163 (1088)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHHHHHHHHHHHHHHHHHh
Confidence 888888888887654 2221111111 1 111111 12222333455555555554
Q ss_pred HhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccC
Q 038748 229 EMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIG 308 (482)
Q Consensus 229 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 308 (482)
.+.......|. ..+++-.......+++...+.+.... .|+..+|..++.+-...|+++.|..++.+| ++.|
T Consensus 164 ~~Pvsa~~~p~-----~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~em-ke~g 234 (1088)
T KOG4318|consen 164 KVPVSAWNAPF-----QVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEM-KEKG 234 (1088)
T ss_pred hCCcccccchH-----HHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHH-HHcC
Confidence 44321111111 01122222221222222222222222 477777777777777777788787777777 4777
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 038748 309 FRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRK 363 (482)
Q Consensus 309 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 363 (482)
++.+..-|-.|+-+ .++...++.++.-|.+.|+.|+..|+.--+-.+..+|.
T Consensus 235 fpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 235 FPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred CCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 77777766666654 66777777777777777777777777766666665444
No 50
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=3.3e-09 Score=93.95 Aligned_cols=347 Identities=13% Similarity=0.039 Sum_probs=231.3
Q ss_pred hcCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHH--HHHHHHHHhhCChhhH
Q 038748 77 SYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATF--ASVFSSYVVADRVKDA 154 (482)
Q Consensus 77 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~li~~~~~~~~~~~a 154 (482)
..|....|.+.|..... ..+-.-.+|..|...+ .+.+.+..+ ....+.+..-. -.+..++-.....+++
T Consensus 176 ~~~~~s~A~~sfv~~v~--~~P~~W~AWleL~~li---t~~e~~~~l----~~~l~~~~h~M~~~F~~~a~~el~q~~e~ 246 (559)
T KOG1155|consen 176 ELGLLSLAIDSFVEVVN--RYPWFWSAWLELSELI---TDIEILSIL----VVGLPSDMHWMKKFFLKKAYQELHQHEEA 246 (559)
T ss_pred hhchHHHHHHHHHHHHh--cCCcchHHHHHHHHhh---chHHHHHHH----HhcCcccchHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777776554 3333444444444333 222222222 22122111111 1234455566678888
Q ss_pred HHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 038748 155 ITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIK---PDNDTYAILLEGWEKERDVANAKKTFGEMV 231 (482)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 231 (482)
.+=.+.....|+.-+...-+....+.-...|+|+|+.+|+++.+..+ .|..+|+.++-+--.+..+ ..+.+-.
T Consensus 247 ~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skL----s~LA~~v 322 (559)
T KOG1155|consen 247 LQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKL----SYLAQNV 322 (559)
T ss_pred HHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHH----HHHHHHH
Confidence 88888888888765555555555566677899999999999876432 3667777766443222221 2221111
Q ss_pred -HhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCC
Q 038748 232 -IEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFR 310 (482)
Q Consensus 232 -~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 310 (482)
.-....|. |.-.+.+.+.-. ++.++|...|+...+.+ +-....|+.+..-|...++...|.+-++..++- .+
T Consensus 323 ~~idKyR~E---TCCiIaNYYSlr-~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi--~p 395 (559)
T KOG1155|consen 323 SNIDKYRPE---TCCIIANYYSLR-SEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI--NP 395 (559)
T ss_pred HHhccCCcc---ceeeehhHHHHH-HhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc--Cc
Confidence 11244453 555555555556 89999999999988864 234667888889999999999999999998722 14
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHH
Q 038748 311 PDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAV 390 (482)
Q Consensus 311 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 390 (482)
.|-..|..|-.+|.-.+...-|+-.|++..+.. +-|...|.+|..+|.+.++.++|.+.|+.....|-. +...+..|.
T Consensus 396 ~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~~l~~La 473 (559)
T KOG1155|consen 396 RDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGSALVRLA 473 (559)
T ss_pred hhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chHHHHHHH
Confidence 578899999999999999999999999988853 237788999999999999999999999999887643 567888999
Q ss_pred HHHhcCCChHHHHHHHHHHHH----cCCCCChh--hHHHHHHHHHhcCChhHHHHHHHHHH
Q 038748 391 RVYMDSDDPYVAIKFWKYMIE----NHCSDLSE--TGNLLVAGLCDMHMLPEAVKYAKGMA 445 (482)
Q Consensus 391 ~~~~~~~~~~~a~~~~~~m~~----~~~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m~ 445 (482)
+.|-+.++.++|...|...++ .|...+.. .---|..-+.+.+++++|..+.....
T Consensus 474 kLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 474 KLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 999999999999998887764 23322211 11224455677888888877665544
No 51
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.50 E-value=7e-11 Score=103.99 Aligned_cols=363 Identities=13% Similarity=0.044 Sum_probs=227.5
Q ss_pred HHHHhhCCCcHHHHHHHHHHHhcCC-CCH----HHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHh
Q 038748 108 VDLLGKNCLFDAMWDAIKSMKKENV-LSL----ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICR 182 (482)
Q Consensus 108 i~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 182 (482)
-..+.+...+.+|+++|......-+ .+. ...+.+.-.|.+.|.++.|+.-|+...+. .|+..+--.|+-++..
T Consensus 244 gni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~ 321 (840)
T KOG2003|consen 244 GNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFA 321 (840)
T ss_pred cceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhhee
Confidence 3455566778888888877666533 222 33444555678899999999999988875 4777765556666667
Q ss_pred cCChHhHHHHHHHhhC-------------CCCCCHHHHHHHHH-----HHHhcCC--HHHHHHHHHHhHHhcCCCCCChh
Q 038748 183 DGKTIDAWQFLRVVDG-------------RIKPDNDTYAILLE-----GWEKERD--VANAKKTFGEMVIEVGWDPDNVP 242 (482)
Q Consensus 183 ~g~~~~a~~~~~~~~~-------------~~~~~~~~~~~l~~-----~~~~~~~--~~~a~~~~~~~~~~~~~~p~~~~ 242 (482)
-|+.++..+.|..|.. ...|+....+..|. -.-+.+. -++++-.--++.. .-+.|+-..
T Consensus 322 i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiia-pvi~~~fa~ 400 (840)
T KOG2003|consen 322 IGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIA-PVIAPDFAA 400 (840)
T ss_pred cCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhc-cccccchhc
Confidence 7899999988888643 12344443333222 1212111 1122111111111 122222100
Q ss_pred ------------hH--------HHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHH--HHH--------------
Q 038748 243 ------------AY--------DSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLA--FEE-------------- 286 (482)
Q Consensus 243 ------------~~--------~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l--i~~-------------- 286 (482)
.+ -.-...+++. |+++.|+++++-+.+...+.-...-+.+ +..
T Consensus 401 g~dwcle~lk~s~~~~la~dlei~ka~~~lk~-~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqya 479 (840)
T KOG2003|consen 401 GCDWCLESLKASQHAELAIDLEINKAGELLKN-GDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYA 479 (840)
T ss_pred ccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhc-cCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHH
Confidence 00 1113456788 9999999999887665322211111111 110
Q ss_pred --------------------HHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 038748 287 --------------------CLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFP 346 (482)
Q Consensus 287 --------------------~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 346 (482)
....|++++|.+.+++.+ ...-.-....|| +--.+-..|+.++|++.|-++..- +.-
T Consensus 480 d~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal-~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~n 556 (840)
T KOG2003|consen 480 DIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEAL-NNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLN 556 (840)
T ss_pred HHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHH-cCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHh
Confidence 113577888888888876 221111112222 223456678888888888776543 223
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 038748 347 DIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVA 426 (482)
Q Consensus 347 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 426 (482)
+......+...|....+...|.+++-..... ++.|+.....|...|-+.|+-..|...+-+--. -++.+..+..-|..
T Consensus 557 n~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~a 634 (840)
T KOG2003|consen 557 NAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAA 634 (840)
T ss_pred hHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHH
Confidence 5566667777788888888888888766543 344677888899999999998888876543322 24556677777777
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH-HHHHhccHHHHHHHHHHHhh
Q 038748 427 GLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQ-ILIKARKEAVYEELLKKCKA 481 (482)
Q Consensus 427 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~-~~~~~g~~~~a~~~~~~m~~ 481 (482)
-|....-+++++.+|++.. =++|+..-|..++- ++.+.|++.+|.++++.+.+
T Consensus 635 yyidtqf~ekai~y~ekaa--liqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hr 688 (840)
T KOG2003|consen 635 YYIDTQFSEKAINYFEKAA--LIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR 688 (840)
T ss_pred HHHhhHHHHHHHHHHHHHH--hcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 7888888899999999864 36799999988776 56788999999999987653
No 52
>PRK12370 invasion protein regulator; Provisional
Probab=99.47 E-value=1.8e-10 Score=112.36 Aligned_cols=269 Identities=9% Similarity=0.020 Sum_probs=188.3
Q ss_pred cCCCCHHHHHHHHHHHHh-----hCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHh---------cCChHhHHHHHHH
Q 038748 130 ENVLSLATFASVFSSYVV-----ADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICR---------DGKTIDAWQFLRV 195 (482)
Q Consensus 130 ~~~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~---------~g~~~~a~~~~~~ 195 (482)
..+.+...|...+++-.. .+.+++|.+.|++..+... -+...|..+..++.. .+++++|...+++
T Consensus 251 ~~~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP-~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~ 329 (553)
T PRK12370 251 SELNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSP-NSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIK 329 (553)
T ss_pred CCCCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHH
Confidence 334566667777666422 2456899999999988642 244556655555442 2457899999998
Q ss_pred hhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCC
Q 038748 196 VDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNP 275 (482)
Q Consensus 196 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~ 275 (482)
.....+.+...+..+...+...|++++|...|++..+ +.|++..++..+...+... |++++|+..+++..+....
T Consensus 330 Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~---l~P~~~~a~~~lg~~l~~~-G~~~eAi~~~~~Al~l~P~- 404 (553)
T PRK12370 330 ATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANL---LSPISADIKYYYGWNLFMA-GQLEEALQTINECLKLDPT- 404 (553)
T ss_pred HHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhcCCC-
Confidence 7776677888999999999999999999999999974 4788888898888899998 9999999999999886422
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh-hHHH
Q 038748 276 GMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRP-DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQ-TYNI 353 (482)
Q Consensus 276 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ 353 (482)
+...+..++..+...|++++|...+.++.+. . .| +...+..+..+|...|+.++|...+.++... .|+.. ..+.
T Consensus 405 ~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~-~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~ 480 (553)
T PRK12370 405 RAAAGITKLWITYYHTGIDDAIRLGDELRSQ-H-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNL 480 (553)
T ss_pred ChhhHHHHHHHHHhccCHHHHHHHHHHHHHh-c-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHH
Confidence 2223334444566789999999999988632 2 24 4555677788888999999999999887664 34433 3444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCC-CccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcC
Q 038748 354 LFEFLVKGRKLWEASGLFNEMVKNE-NVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENH 413 (482)
Q Consensus 354 ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 413 (482)
+...+...| ++|...++.+.+.. ..+....+ +-..|.-.|+.+.+..+ +++.+.+
T Consensus 481 l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 481 LYAEYCQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HHHHHhccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 555566666 47777777766542 22222222 33445556777777666 7777654
No 53
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.45 E-value=2.8e-09 Score=95.09 Aligned_cols=386 Identities=11% Similarity=-0.001 Sum_probs=240.7
Q ss_pred hcCCchhHhHHhhhhhcCCCCCCC-HhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHH
Q 038748 77 SYSHPGPAVKFFRWSAYQLNDKHS-PYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAI 155 (482)
Q Consensus 77 ~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 155 (482)
..+..++|++++.|... ..|| +.-|.....+|...|+|+++.+--....+.++.-..++..-..++-..|++++|+
T Consensus 127 ~~kkY~eAIkyY~~AI~---l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal 203 (606)
T KOG0547|consen 127 RNKKYDEAIKYYTQAIE---LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFDEAL 203 (606)
T ss_pred hcccHHHHHHHHHHHHh---cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHH
Confidence 36788999999999886 4566 7889999999999999999998888888877655666666777777788888775
Q ss_pred HHHHHH-HhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHH-hhC---CCCCCHHHHHHHHHHHH---------------
Q 038748 156 TTFDVM-EQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRV-VDG---RIKPDNDTYAILLEGWE--------------- 215 (482)
Q Consensus 156 ~~~~~~-~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~-~~~---~~~~~~~~~~~l~~~~~--------------- 215 (482)
.=..-. +-.|+. +..+--.+=+.+-+ .|.+-.++ +++ ..-|+.....+....+.
T Consensus 204 ~D~tv~ci~~~F~-n~s~~~~~eR~Lkk-----~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksD 277 (606)
T KOG0547|consen 204 FDVTVLCILEGFQ-NASIEPMAERVLKK-----QAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSD 277 (606)
T ss_pred HhhhHHHHhhhcc-cchhHHHHHHHHHH-----HHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccch
Confidence 422111 111211 11111111111111 11111111 221 12222222222222211
Q ss_pred --------h--cC---CHHHHHHHHHHhHHhcCCCC-----CC-----hhhHHHHHHHHHccCCChHHHHHHHHHHHHcC
Q 038748 216 --------K--ER---DVANAKKTFGEMVIEVGWDP-----DN-----VPAYDSYLITLLKGCDGIYETVNSLKRMMERG 272 (482)
Q Consensus 216 --------~--~~---~~~~a~~~~~~~~~~~~~~p-----~~-----~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~ 272 (482)
. .+ .+..|.+.+.+-.......+ |. ..+...-...++-. |+...+.+-|+..++..
T Consensus 278 a~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~-g~~~~a~~d~~~~I~l~ 356 (606)
T KOG0547|consen 278 AALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLK-GDSLGAQEDFDAAIKLD 356 (606)
T ss_pred hhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhc-CCchhhhhhHHHHHhcC
Confidence 0 11 23333333322211000011 00 11111111112233 88899999999988865
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHH
Q 038748 273 CNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYN 352 (482)
Q Consensus 273 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 352 (482)
..++. .|.-+..+|....+.++..+.|.... +.+ +-+..+|..-...+.-.+++++|..=|++....... +...|-
T Consensus 357 ~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~-~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~~~~~i 432 (606)
T KOG0547|consen 357 PAFNS-LYIKRAAAYADENQSEKMWKDFNKAE-DLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-NAYAYI 432 (606)
T ss_pred cccch-HHHHHHHHHhhhhccHHHHHHHHHHH-hcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-hhHHHH
Confidence 44333 37777788999999999999999885 322 224556666666777778999999999998875221 344555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCC-----CChhh--HHHHH
Q 038748 353 ILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCS-----DLSET--GNLLV 425 (482)
Q Consensus 353 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-----p~~~~--~~~li 425 (482)
.+.-+..+.+++++++..|++..+. ++-.+..|+.....+...++++.|.+.|+..++..-. .+... --.++
T Consensus 433 Ql~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l 511 (606)
T KOG0547|consen 433 QLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALL 511 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHh
Confidence 5555566788999999999999876 3446778999999999999999999999998863211 11111 11122
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 038748 426 AGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKC 479 (482)
Q Consensus 426 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 479 (482)
..-. .+++..|.+++++..+.+.+ ....|..|...-.+.|+.++|+++|++-
T Consensus 512 ~~qw-k~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 512 VLQW-KEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred hhch-hhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 1112 38899999999999877633 3468999999999999999999999874
No 54
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.44 E-value=1.1e-11 Score=117.38 Aligned_cols=273 Identities=13% Similarity=0.035 Sum_probs=199.1
Q ss_pred HHHHHHHhcCC-CCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCC
Q 038748 122 DAIKSMKKENV-LSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRI 200 (482)
Q Consensus 122 ~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 200 (482)
.++-.+...|+ |+..||..+|..|+..|+.+.|- +|..|.-.....+...|+.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 46677788886 89999999999999999999998 9988887777778888999999999998888775
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHH-HcCCCCCHHH
Q 038748 201 KPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMM-ERGCNPGMTF 279 (482)
Q Consensus 201 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~-~~~~~~~~~~ 279 (482)
.|...||..|..+|...||+.. |+...+ -...+...+... |.......++..+. ..+.-||..
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~----fe~veq----------dLe~i~~sfs~~-Gvgs~e~~fl~k~~c~p~~lpda~- 143 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLIL----FEVVEQ----------DLESINQSFSDH-GVGSPERWFLMKIHCCPHSLPDAE- 143 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHH----HHHHHH----------HHHHHHhhhhhh-ccCcHHHHHHhhcccCcccchhHH-
Confidence 7888999999999999999876 333221 011223333444 55555555554432 233445543
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 038748 280 FKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSN-ETGAAMKLLDEMVYNGAFPDIQTYNILFEFL 358 (482)
Q Consensus 280 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 358 (482)
..+....-.|-++.+.+++..+.......|..+ ++.-..... .+++-..+.....+ .|+..+|..++.+-
T Consensus 144 --n~illlv~eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~a 214 (1088)
T KOG4318|consen 144 --NAILLLVLEGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRA 214 (1088)
T ss_pred --HHHHHHHHHHHHHHHHHHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHH
Confidence 345555667888888888877642222222222 233333222 23333333333333 48999999999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 038748 359 VKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHM 433 (482)
Q Consensus 359 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 433 (482)
..+|+.+.|..++.+|.+.|+..+.+-|..|+-+ .++...+..+++.|.+.|+.|+..|+...+-.+..+|.
T Consensus 215 laag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 215 LAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 9999999999999999999999999988888876 78899999999999999999999999988888877665
No 55
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.43 E-value=1.4e-08 Score=93.77 Aligned_cols=408 Identities=14% Similarity=0.082 Sum_probs=247.9
Q ss_pred HHHHhhhcCCCCCHHHHHHHHHhhcCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCC
Q 038748 54 VEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL 133 (482)
Q Consensus 54 ~~~~l~~~~~~~~~~~~~~ll~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 133 (482)
+...|...+-++..-..-.+.-.+.|+-++|.+....-.+ +...+.+.|+.+.-.+-...++++|++.|......+..
T Consensus 30 ~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr--~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~d 107 (700)
T KOG1156|consen 30 IKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLR--NDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKD 107 (700)
T ss_pred HHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhc--cCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC
Confidence 5555665666666666666666788999999999887666 66778888999888888889999999999999999988
Q ss_pred CHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCC--CCCHHHHHHHH
Q 038748 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRI--KPDNDTYAILL 211 (482)
Q Consensus 134 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~l~ 211 (482)
|...|.-+.-.-++.|+++..........+... .....|..+..++.-.|+...|..+.+...+.. .|+...|....
T Consensus 108 N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~-~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se 186 (700)
T KOG1156|consen 108 NLQILRDLSLLQIQMRDYEGYLETRNQLLQLRP-SQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSE 186 (700)
T ss_pred cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHH
Confidence 999998888888888999988888888877531 244568888888888999999999999876533 46666655433
Q ss_pred ------HHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 038748 212 ------EGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFE 285 (482)
Q Consensus 212 ------~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 285 (482)
....+.|..+.|.+.+...... ..|....-.+-...+.+. +++++|..++..++... ||...|...+.
T Consensus 187 ~~Ly~n~i~~E~g~~q~ale~L~~~e~~---i~Dkla~~e~ka~l~~kl-~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~ 260 (700)
T KOG1156|consen 187 LLLYQNQILIEAGSLQKALEHLLDNEKQ---IVDKLAFEETKADLLMKL-GQLEEAVKVYRRLLERN--PDNLDYYEGLE 260 (700)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHhhhhH---HHHHHHHhhhHHHHHHHH-hhHHhHHHHHHHHHhhC--chhHHHHHHHH
Confidence 3345678888888777665422 222233333445556666 99999999999998864 77666665554
Q ss_pred HHH-hcCChhHHH-HHHHHhhcccCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC
Q 038748 286 ECL-TGQNLRGAE-FIWGAMVGRIGFRPDTHMYNMMISLYCY-SNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGR 362 (482)
Q Consensus 286 ~~~-~~g~~~~a~-~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 362 (482)
.+. +..+.-++. .+|....+. .|....-..+--.... ..-.+..-.++..+.+.|+.+- +..+...|-...
T Consensus 261 ~~lgk~~d~~~~lk~ly~~ls~~---y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~v---f~dl~SLyk~p~ 334 (700)
T KOG1156|consen 261 KALGKIKDMLEALKALYAILSEK---YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSV---FKDLRSLYKDPE 334 (700)
T ss_pred HHHHHHhhhHHHHHHHHHHHhhc---CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCch---hhhhHHHHhchh
Confidence 444 344444444 566655311 1111100000000111 1122333445555566665432 222222221111
Q ss_pred CHHH----HHHHHHHHHhCC----------CccChhhHH--HHHHHHhcCCChHHHHHHHHHHHHcCCCCCh-hhHHHHH
Q 038748 363 KLWE----ASGLFNEMVKNE----------NVLNHENCR--AAVRVYMDSDDPYVAIKFWKYMIENHCSDLS-ETGNLLV 425 (482)
Q Consensus 363 ~~~~----a~~~~~~~~~~~----------~~~~~~~~~--~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~li 425 (482)
..+- +..+...+...| -.|+...|. .++..|-+.|+++.|...++..+++ .|+. ..|-.=.
T Consensus 335 k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~Ka 412 (700)
T KOG1156|consen 335 KVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKA 412 (700)
T ss_pred HhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHH
Confidence 1111 111111111111 023333333 3555666677777777777766653 3443 3333334
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 038748 426 AGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKC 479 (482)
Q Consensus 426 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 479 (482)
..+...|++++|..++++..+.+. +|..+-..-.+...++++.++|.+++.+.
T Consensus 413 RI~kH~G~l~eAa~~l~ea~elD~-aDR~INsKcAKYmLrAn~i~eA~~~~skF 465 (700)
T KOG1156|consen 413 RIFKHAGLLDEAAAWLDEAQELDT-ADRAINSKCAKYMLRANEIEEAEEVLSKF 465 (700)
T ss_pred HHHHhcCChHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHccccHHHHHHHHHh
Confidence 556667777777777777766652 45555555666666667777776665543
No 56
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.41 E-value=3e-10 Score=98.65 Aligned_cols=197 Identities=11% Similarity=0.000 Sum_probs=109.3
Q ss_pred HhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHH
Q 038748 101 PYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAI 180 (482)
Q Consensus 101 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 180 (482)
...+..+...+...|++++|...+++..+..+.+...+..+...+...|++++|.+.++...+... .+...+..+...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~ 109 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHH
Confidence 455666666666677777777777766665555556666666666666677777666666665432 2344555556666
Q ss_pred HhcCChHhHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCCh
Q 038748 181 CRDGKTIDAWQFLRVVDGR--IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGI 258 (482)
Q Consensus 181 ~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 258 (482)
...|++++|.+.++..... .......+..+..++...|++++|...+++... ..|++...+..+...+... |++
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~la~~~~~~-~~~ 185 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQ---IDPQRPESLLELAELYYLR-GQY 185 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCChHHHHHHHHHHHHc-CCH
Confidence 6666666666666664321 122334445555555666666666666665542 2343444455555555555 555
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 038748 259 YETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAM 303 (482)
Q Consensus 259 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 303 (482)
++|.+.+++.... .+.+...+..+...+...|+.+.|..+.+.+
T Consensus 186 ~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 186 KDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 5555555555443 1223333444444444555555555544443
No 57
>PRK12370 invasion protein regulator; Provisional
Probab=99.41 E-value=3.9e-10 Score=110.02 Aligned_cols=268 Identities=11% Similarity=0.013 Sum_probs=196.3
Q ss_pred CCCHhhHHHHHHHHhh-----CCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhh---------CChhhHHHHHHHHHh
Q 038748 98 KHSPYAWNLVVDLLGK-----NCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVA---------DRVKDAITTFDVMEQ 163 (482)
Q Consensus 98 ~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~---------~~~~~a~~~~~~~~~ 163 (482)
..+...|...+.+... .+++++|..+|++..+..+.+...|..+..++... +++++|...+++..+
T Consensus 253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 4566666666665321 24578999999999999887888888777665532 448999999999998
Q ss_pred cCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhh
Q 038748 164 YGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPA 243 (482)
Q Consensus 164 ~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~ 243 (482)
.+. -+...+..+...+...|++++|...|++.....+.+...+..+..++...|++++|...+++.. .+.|++...
T Consensus 333 ldP-~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al---~l~P~~~~~ 408 (553)
T PRK12370 333 LDH-NNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECL---KLDPTRAAA 408 (553)
T ss_pred cCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hcCCCChhh
Confidence 753 3677888888889999999999999999776667778889999999999999999999999997 457765555
Q ss_pred HHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCC-HHHHHHHHHH
Q 038748 244 YDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD-THMYNMMISL 322 (482)
Q Consensus 244 ~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~ 322 (482)
+..++..+... |++++|+..+++......+-+...+..+..++...|+.++|...+.++... .|+ ....+.+...
T Consensus 409 ~~~~~~~~~~~-g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~---~~~~~~~~~~l~~~ 484 (553)
T PRK12370 409 GITKLWITYYH-TGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ---EITGLIAVNLLYAE 484 (553)
T ss_pred HHHHHHHHHhc-cCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc---cchhHHHHHHHHHH
Confidence 55555567777 999999999999876542224555677788888999999999999987522 333 4445556667
Q ss_pred HHhcCCHHHHHHHHHHHHHCC-CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 038748 323 YCYSNETGAAMKLLDEMVYNG-AFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNE 378 (482)
Q Consensus 323 ~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 378 (482)
|+..| ++|...++.+.+.. ..+....+..+ .+.-.|+-+.+..+ +++.+.+
T Consensus 485 ~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 485 YCQNS--ERALPTIREFLESEQRIDNNPGLLPL--VLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HhccH--HHHHHHHHHHHHHhhHhhcCchHHHH--HHHHHhhhHHHHHH-HHhhccc
Confidence 77777 47777777766531 22332333333 34445676666555 7777654
No 58
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.40 E-value=1.9e-10 Score=97.11 Aligned_cols=230 Identities=11% Similarity=0.015 Sum_probs=184.8
Q ss_pred HHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 038748 139 ASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKER 218 (482)
Q Consensus 139 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 218 (482)
+.+.++|.+.|.+.+|.+-|+...+. .|-+.||-.|-++|.+..+.+.|+.++.+-.+..+-|+....-+.+.+-..+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHH
Confidence 67889999999999999999988875 4677788889999999999999999999977777778877888899999999
Q ss_pred CHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 038748 219 DVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEF 298 (482)
Q Consensus 219 ~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 298 (482)
+.++|.++|+...+ ..|.++.+...+...++-. ++++-|+.+|+.+.+.|+. +...|..+.-+|.-.+++|-++.
T Consensus 305 ~~~~a~~lYk~vlk---~~~~nvEaiAcia~~yfY~-~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 305 QQEDALQLYKLVLK---LHPINVEAIACIAVGYFYD-NNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred hHHHHHHHHHHHHh---cCCccceeeeeeeeccccC-CChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHH
Confidence 99999999999874 4676777777788888888 9999999999999999865 56778888888888899999888
Q ss_pred HHHHhhcccCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038748 299 IWGAMVGRIGFRPD--THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK 376 (482)
Q Consensus 299 ~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 376 (482)
-|.+.+ .--..|+ ..+|..+-......||+.-|.+.|+-....+.. ....++.|.-.-.+.|++++|..++.....
T Consensus 380 sf~RAl-stat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 380 SFQRAL-STATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHH-hhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 888775 2222232 345666766677778888888888777765332 456677777777788888888888877765
Q ss_pred C
Q 038748 377 N 377 (482)
Q Consensus 377 ~ 377 (482)
.
T Consensus 458 ~ 458 (478)
T KOG1129|consen 458 V 458 (478)
T ss_pred h
Confidence 4
No 59
>PF13041 PPR_2: PPR repeat family
Probab=99.39 E-value=1.1e-12 Score=82.08 Aligned_cols=50 Identities=46% Similarity=0.659 Sum_probs=34.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 038748 311 PDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVK 360 (482)
Q Consensus 311 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 360 (482)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56667777777777777777777777777777777777777777766653
No 60
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.39 E-value=3.9e-09 Score=99.65 Aligned_cols=292 Identities=10% Similarity=0.073 Sum_probs=169.8
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhh-HHHHHHHHHhc--
Q 038748 107 VVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFA-LNSLLSAICRD-- 183 (482)
Q Consensus 107 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~-- 183 (482)
....+...|++++|++.++.-...-+.....+......+.+.|+.++|..+|..+++.+ |+... |..+..+..-.
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcc
Confidence 34556677777777777766555444445566667777777777888888877777765 34333 44444444222
Q ss_pred ---CChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChH
Q 038748 184 ---GKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVA-NAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIY 259 (482)
Q Consensus 184 ---g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~ 259 (482)
.+.+...++|+++....+ .......+.-.+.....+. .+...+..+..+ |+ | .++..+-..|... ....
T Consensus 88 ~~~~~~~~~~~~y~~l~~~yp-~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~K-gv-P---slF~~lk~Ly~d~-~K~~ 160 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKYP-RSDAPRRLPLDFLEGDEFKERLDEYLRPQLRK-GV-P---SLFSNLKPLYKDP-EKAA 160 (517)
T ss_pred cccccHHHHHHHHHHHHHhCc-cccchhHhhcccCCHHHHHHHHHHHHHHHHhc-CC-c---hHHHHHHHHHcCh-hHHH
Confidence 245566667777655432 2222222211122222222 223334444433 43 2 1455544444433 4444
Q ss_pred HHHHHHHHHHHc----C----------CCCCH--HHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCC-HHHHHHHHHH
Q 038748 260 ETVNSLKRMMER----G----------CNPGM--TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD-THMYNMMISL 322 (482)
Q Consensus 260 ~a~~~~~~m~~~----~----------~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~ 322 (482)
-..+++...... + -+|+. .++.-+...|...|++++|.++++..+ .+ .|+ +..|..-.+.
T Consensus 161 ~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI-~h--tPt~~ely~~Kari 237 (517)
T PF12569_consen 161 IIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAI-EH--TPTLVELYMTKARI 237 (517)
T ss_pred HHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH-hc--CCCcHHHHHHHHHH
Confidence 455555554332 1 12333 234555666777888888888888776 22 454 5567777777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhh--------HHHHHHHHh
Q 038748 323 YCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHEN--------CRAAVRVYM 394 (482)
Q Consensus 323 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--------~~~li~~~~ 394 (482)
|-..|++++|.+.++...+.... |...=+.....+.++|++++|.+++....+.+..|-... ......+|.
T Consensus 238 lKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~ 316 (517)
T PF12569_consen 238 LKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYL 316 (517)
T ss_pred HHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHH
Confidence 88888888888888887776443 555566666777788888888888887776654332211 123456777
Q ss_pred cCCChHHHHHHHHHHHH
Q 038748 395 DSDDPYVAIKFWKYMIE 411 (482)
Q Consensus 395 ~~~~~~~a~~~~~~m~~ 411 (482)
+.|++..|++.|..+.+
T Consensus 317 r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 317 RQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 88888888777666553
No 61
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.39 E-value=4.6e-10 Score=97.46 Aligned_cols=95 Identities=14% Similarity=0.111 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 038748 205 DTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAF 284 (482)
Q Consensus 205 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 284 (482)
..+..+...+...|++++|...+++.... .|++...+..+...+... |++++|.+.+++..+.. +.+...+..+.
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~-~~~~~A~~~~~~al~~~-~~~~~~~~~~~ 106 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEH---DPDDYLAYLALALYYQQL-GELEKAEDSFRRALTLN-PNNGDVLNNYG 106 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence 34444555555555555555555555422 343444444444444444 55555555555444432 11223333444
Q ss_pred HHHHhcCChhHHHHHHHHhh
Q 038748 285 EECLTGQNLRGAEFIWGAMV 304 (482)
Q Consensus 285 ~~~~~~g~~~~a~~~~~~~~ 304 (482)
..+...|++++|.+.+....
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~ 126 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAI 126 (234)
T ss_pred HHHHHcccHHHHHHHHHHHH
Confidence 44444444444444444443
No 62
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.38 E-value=2.9e-09 Score=100.48 Aligned_cols=88 Identities=18% Similarity=0.181 Sum_probs=41.1
Q ss_pred HHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-----
Q 038748 143 SSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKE----- 217 (482)
Q Consensus 143 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~----- 217 (482)
..+...|++++|++.++.-... +.............+.+.|+.++|..+|..+....+.|..-|..+..+..-.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~ 90 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSD 90 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhccccc
Confidence 3445555555555555443332 2222333444445555555555555555555444444444444444444221
Q ss_pred CCHHHHHHHHHHhH
Q 038748 218 RDVANAKKTFGEMV 231 (482)
Q Consensus 218 ~~~~~a~~~~~~~~ 231 (482)
.+.+...++|+++.
T Consensus 91 ~~~~~~~~~y~~l~ 104 (517)
T PF12569_consen 91 EDVEKLLELYDELA 104 (517)
T ss_pred ccHHHHHHHHHHHH
Confidence 13444455555554
No 63
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.37 E-value=1.3e-08 Score=90.91 Aligned_cols=356 Identities=15% Similarity=0.047 Sum_probs=222.9
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCC-HhhHHHHHHHHHh
Q 038748 104 WNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHD-VFALNSLLSAICR 182 (482)
Q Consensus 104 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~ 182 (482)
+-....-|-++|++++|++.|.+..+..+..+..|.....+|...|+|+++.+.-....+. .|+ +..+.--..++-.
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~ 195 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQ 195 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHh
Confidence 3344456677899999999999998876554777888888999999999998888877774 344 2344555566677
Q ss_pred cCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh--------HH--hcCCCCCChhhHHHHHHHHH
Q 038748 183 DGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEM--------VI--EVGWDPDNVPAYDSYLITLL 252 (482)
Q Consensus 183 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--------~~--~~~~~p~~~~~~~~l~~~~~ 252 (482)
.|++++|+.=. |-..++.++....-.-.+.++++.. .+ +..+-| +.....+....+.
T Consensus 196 lg~~~eal~D~------------tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lP-S~~fi~syf~sF~ 262 (606)
T KOG0547|consen 196 LGKFDEALFDV------------TVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLP-SATFIASYFGSFH 262 (606)
T ss_pred hccHHHHHHhh------------hHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCC-cHHHHHHHHhhcc
Confidence 78888775421 2222222222222222223332221 11 112233 2222233222221
Q ss_pred ccC---------------------------CChHHHHHHHHHHHHc-CCCC-----CH------HHHHHHHHHHHhcCCh
Q 038748 253 KGC---------------------------DGIYETVNSLKRMMER-GCNP-----GM------TFFKLAFEECLTGQNL 293 (482)
Q Consensus 253 ~~~---------------------------~~~~~a~~~~~~m~~~-~~~~-----~~------~~~~~li~~~~~~g~~ 293 (482)
... ..+.++.+.+.+-... -..+ |. .+.......+.-.|+.
T Consensus 263 ~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~ 342 (606)
T KOG0547|consen 263 ADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDS 342 (606)
T ss_pred ccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCc
Confidence 110 1222222222221110 0011 11 1111112223346888
Q ss_pred hHHHHHHHHhhcccCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 038748 294 RGAEFIWGAMVGRIGFRP-DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFN 372 (482)
Q Consensus 294 ~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 372 (482)
-.|..-|+..++- .| +...|--+..+|...++.++....|++..+.+.. +..+|..-.+...-.+++++|..=|+
T Consensus 343 ~~a~~d~~~~I~l---~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~ 418 (606)
T KOG0547|consen 343 LGAQEDFDAAIKL---DPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQ 418 (606)
T ss_pred hhhhhhHHHHHhc---CcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHH
Confidence 8899999988722 23 2233777778899999999999999999886543 56677777777777889999999999
Q ss_pred HHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcC----
Q 038748 373 EMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKG---- 448 (482)
Q Consensus 373 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---- 448 (482)
+.++.... +...|--+..+..+.+.+++++..|++.+++ ++-....|+.....+...++++.|.+.|+..++..
T Consensus 419 Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~ 496 (606)
T KOG0547|consen 419 KAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREH 496 (606)
T ss_pred HHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccc
Confidence 99886543 5556666666777899999999999999875 54555899999999999999999999999987653
Q ss_pred -CCCCH--HHHHHHHHHHHHhccHHHHHHHHHHHhh
Q 038748 449 -IQVTP--FALSKLKQILIKARKEAVYEELLKKCKA 481 (482)
Q Consensus 449 -~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 481 (482)
+..+. .+-..++. +.=.+++..|.+++++..+
T Consensus 497 ~~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e 531 (606)
T KOG0547|consen 497 LIIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIE 531 (606)
T ss_pred cccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHc
Confidence 22222 22222222 2233888999999888654
No 64
>PF13041 PPR_2: PPR repeat family
Probab=99.36 E-value=2e-12 Score=80.89 Aligned_cols=49 Identities=29% Similarity=0.364 Sum_probs=27.1
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 038748 416 DLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILI 464 (482)
Q Consensus 416 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~ 464 (482)
||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555543
No 65
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.33 E-value=8.7e-08 Score=88.73 Aligned_cols=400 Identities=12% Similarity=0.037 Sum_probs=259.7
Q ss_pred CCHHHHHHHHH---hhcCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHH
Q 038748 65 VSQETVEQVLK---FSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASV 141 (482)
Q Consensus 65 ~~~~~~~~ll~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 141 (482)
+....+-.++. ..-.+.++|++.|.-+.. ..+-|...|..+--.-.+.|+++..........+..+.....|..+
T Consensus 72 ~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~--~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~ 149 (700)
T KOG1156|consen 72 LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALK--IEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGF 149 (700)
T ss_pred cccchhHHHHHHHHhhhhhHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHH
Confidence 33444444444 455778999999998877 6677888898888888889999999999888888877777889999
Q ss_pred HHHHHhhCChhhHHHHHHHHHhcC-CCCCHhhHHHHH------HHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 038748 142 FSSYVVADRVKDAITTFDVMEQYG-CKHDVFALNSLL------SAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGW 214 (482)
Q Consensus 142 i~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll------~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 214 (482)
..++.-.|+...|..+++...+.. -.|+...+.... ....+.|..+.|.+.+......+......-.+-...+
T Consensus 150 Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~ 229 (700)
T KOG1156|consen 150 AVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLL 229 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHH
Confidence 999999999999999999998764 246666665443 3345678888888877766544444444455667788
Q ss_pred HhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHhcCCh
Q 038748 215 EKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFF-KLAFEECLTGQNL 293 (482)
Q Consensus 215 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-~~li~~~~~~g~~ 293 (482)
.+.+++++|..++..+..+ .||+...|..+..++.+-.+..+....+|....+.- |-...- ..=+.......-.
T Consensus 230 ~kl~~lEeA~~~y~~Ll~r---nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y--~r~e~p~Rlplsvl~~eel~ 304 (700)
T KOG1156|consen 230 MKLGQLEEAVKVYRRLLER---NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKY--PRHECPRRLPLSVLNGEELK 304 (700)
T ss_pred HHHhhHHhHHHHHHHHHhh---CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC--cccccchhccHHHhCcchhH
Confidence 8999999999999999865 898887777777777533144444446666554421 111110 0111111112222
Q ss_pred hHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHH----HHHHHCCC----------CCCHh--hHHHHHHH
Q 038748 294 RGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLL----DEMVYNGA----------FPDIQ--TYNILFEF 357 (482)
Q Consensus 294 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~----~~m~~~g~----------~p~~~--~~~~ll~~ 357 (482)
+...+++..++ +.|+++ ++..+...|-.-...+-..++. ..+...|. .|... ++..++..
T Consensus 305 ~~vdkyL~~~l-~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh 380 (700)
T KOG1156|consen 305 EIVDKYLRPLL-SKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQH 380 (700)
T ss_pred HHHHHHHHHHh-hcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHH
Confidence 33444555554 555543 2333333333222211111111 11111111 34443 34556677
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCccC-hhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhH
Q 038748 358 LVKGRKLWEASGLFNEMVKNENVLN-HENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPE 436 (482)
Q Consensus 358 ~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 436 (482)
+-..|+++.|..+++..+.+ .|+ ...|..=.+.+...|++++|..++++..+.+. +|...-.--.+-..++++.++
T Consensus 381 ~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~-aDR~INsKcAKYmLrAn~i~e 457 (700)
T KOG1156|consen 381 YDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT-ADRAINSKCAKYMLRANEIEE 457 (700)
T ss_pred HHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHccccHH
Confidence 88899999999999998875 233 23444455788889999999999999988763 564444455666778899999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHH----------HHHHHHHhccHHHHHHHHHHHh
Q 038748 437 AVKYAKGMAEKGIQVTPFALSK----------LKQILIKARKEAVYEELLKKCK 480 (482)
Q Consensus 437 A~~~~~~m~~~~~~~~~~~~~~----------l~~~~~~~g~~~~a~~~~~~m~ 480 (482)
|.++.....+.|. +...... -..+|.+.|++..|+.=+..+.
T Consensus 458 A~~~~skFTr~~~--~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 458 AEEVLSKFTREGF--GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred HHHHHHHhhhccc--chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 9999999987774 2222111 1236888888877776555443
No 66
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=6.8e-09 Score=94.37 Aligned_cols=283 Identities=12% Similarity=0.009 Sum_probs=211.8
Q ss_pred CHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHH
Q 038748 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEG 213 (482)
Q Consensus 134 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 213 (482)
+......-.+-|...+++++..++++...+.. ++....+..-|.++...|+..+...+=..+.+..+....+|-++.--
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~Y 321 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCY 321 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHH
Confidence 44555566677778889999999999888763 34556666777788888888777776677777778888899999888
Q ss_pred HHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 038748 214 WEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNL 293 (482)
Q Consensus 214 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 293 (482)
|.-.|+..+|.+.|.+.. .++|.-...|-.+...+.-. +.-+.|+..+...-+. ++-...-+--+.--|.+.+++
T Consensus 322 Yl~i~k~seARry~SKat---~lD~~fgpaWl~fghsfa~e-~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~ 396 (611)
T KOG1173|consen 322 YLMIGKYSEARRYFSKAT---TLDPTFGPAWLAFGHSFAGE-GEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNL 396 (611)
T ss_pred HHHhcCcHHHHHHHHHHh---hcCccccHHHHHHhHHhhhc-chHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccH
Confidence 888899999999998874 66776667888888888888 8999999888776553 111111122234457788999
Q ss_pred hHHHHHHHHhhcccCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----C--CCCCHhhHHHHHHHHHhcCCHHH
Q 038748 294 RGAEFIWGAMVGRIGFRP-DTHMYNMMISLYCYSNETGAAMKLLDEMVYN----G--AFPDIQTYNILFEFLVKGRKLWE 366 (482)
Q Consensus 294 ~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g--~~p~~~~~~~ll~~~~~~g~~~~ 366 (482)
+.|.+.|.+.. ++.| |+.+.+-+--.....+.+.+|..+|+..... + ..-...+++.|..+|.+.+.+++
T Consensus 397 kLAe~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~e 473 (611)
T KOG1173|consen 397 KLAEKFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEE 473 (611)
T ss_pred HHHHHHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHH
Confidence 99999999876 4444 5666776666666778889999888876631 1 01244567888888999999999
Q ss_pred HHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 038748 367 ASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGL 428 (482)
Q Consensus 367 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 428 (482)
|+..++..+....+ +..++.++.-.|...|+++.|.+.|.+... +.|+..+-..++..+
T Consensus 474 AI~~~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 474 AIDYYQKALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLA 532 (611)
T ss_pred HHHHHHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHH
Confidence 99999998877544 788888999999999999999999988775 567766666655543
No 67
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.29 E-value=1.8e-07 Score=80.42 Aligned_cols=388 Identities=8% Similarity=-0.050 Sum_probs=214.6
Q ss_pred HHHHHHHhh---cCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 038748 69 TVEQVLKFS---YSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSY 145 (482)
Q Consensus 69 ~~~~ll~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 145 (482)
.+...|..| -|+.++|+..+..+.. ...++...+-.+.-.+--.|.+.+|..+-....+ +.-.-..++..-
T Consensus 58 ~~~lWia~C~fhLgdY~~Al~~Y~~~~~--~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k----~pL~~RLlfhla 131 (557)
T KOG3785|consen 58 SLQLWIAHCYFHLGDYEEALNVYTFLMN--KDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPK----TPLCIRLLFHLA 131 (557)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHhc--cCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCC----ChHHHHHHHHHH
Confidence 455555533 5788888888887666 4455566665555555556666676665444322 222233344444
Q ss_pred HhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHH-HHHHHHHhcCCHHHHH
Q 038748 146 VVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYA-ILLEGWEKERDVANAK 224 (482)
Q Consensus 146 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~ 224 (482)
-+.++-++-....+.+.. +..---+|.......-.+.+|+++|..+... .|+....| .+.-+|.+..-++-+.
T Consensus 132 hklndEk~~~~fh~~LqD-----~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d-n~ey~alNVy~ALCyyKlDYydvsq 205 (557)
T KOG3785|consen 132 HKLNDEKRILTFHSSLQD-----TLEDQLSLASVHYMRMHYQEAIDVYKRVLQD-NPEYIALNVYMALCYYKLDYYDVSQ 205 (557)
T ss_pred HHhCcHHHHHHHHHHHhh-----hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc-ChhhhhhHHHHHHHHHhcchhhhHH
Confidence 455555555554444433 1122233444444445677788888775432 23333333 2344666777777777
Q ss_pred HHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHH--------------HHcC------------CCCC--
Q 038748 225 KTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRM--------------MERG------------CNPG-- 276 (482)
Q Consensus 225 ~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m--------------~~~~------------~~~~-- 276 (482)
+++.-..+. .||++.+.|.......+. -.-..|.+-..++ .+.+ +-|.
T Consensus 206 evl~vYL~q---~pdStiA~NLkacn~fRl-~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~ 281 (557)
T KOG3785|consen 206 EVLKVYLRQ---FPDSTIAKNLKACNLFRL-INGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLM 281 (557)
T ss_pred HHHHHHHHh---CCCcHHHHHHHHHHHhhh-hccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHH
Confidence 777766643 566666666655555443 1111122211211 1111 0010
Q ss_pred ---HHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHH-----HHhcCCHHHHHHHHHHHHHCCCCCCH
Q 038748 277 ---MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISL-----YCYSNETGAAMKLLDEMVYNGAFPDI 348 (482)
Q Consensus 277 ---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~-----~~~~~~~~~a~~~~~~m~~~g~~p~~ 348 (482)
+..-..++-.|.+.+++++|..+.+++. ...|-....-.++.+ ......+.-|.+.|+..-+.+..-|.
T Consensus 282 ~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~---PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDT 358 (557)
T KOG3785|consen 282 KHIPEARLNLIIYYLNQNDVQEAISLCKDLD---PTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDT 358 (557)
T ss_pred hhChHhhhhheeeecccccHHHHHHHHhhcC---CCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhccccccccc
Confidence 1122334556778889999988887763 223322222222211 11122355666777666555554443
Q ss_pred h-hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhH-HHHHH
Q 038748 349 Q-TYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETG-NLLVA 426 (482)
Q Consensus 349 ~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~-~~li~ 426 (482)
. .-.++..++.-..++++++.+++.+..--..-|. .--.+.++++..|++.+|+++|-.+....++.+ .+| ..|..
T Consensus 359 IpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~-Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~-~~Y~s~LAr 436 (557)
T KOG3785|consen 359 IPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDD-FNLNLAQAKLATGNYVEAEELFIRISGPEIKNK-ILYKSMLAR 436 (557)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcch-hhhHHHHHHHHhcChHHHHHHHhhhcChhhhhh-HHHHHHHHH
Confidence 2 2344555556667788888888877654333333 333577888889999999999877765555433 455 44558
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHHhccHHHHHHHHHHHh
Q 038748 427 GLCDMHMLPEAVKYAKGMAEKGIQVTPFA-LSKLKQILIKARKEAVYEELLKKCK 480 (482)
Q Consensus 427 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~m~ 480 (482)
+|.++++++-|+.++-++- ..-+... +..+.+.|.+.+.+=-|-+.|+.+.
T Consensus 437 Cyi~nkkP~lAW~~~lk~~---t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE 488 (557)
T KOG3785|consen 437 CYIRNKKPQLAWDMMLKTN---TPSERFSLLQLIANDCYKANEFYYAAKAFDELE 488 (557)
T ss_pred HHHhcCCchHHHHHHHhcC---CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 8889999998888765542 2223333 3444557888888766655555543
No 68
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.28 E-value=2.4e-07 Score=84.97 Aligned_cols=124 Identities=13% Similarity=-0.018 Sum_probs=77.5
Q ss_pred HHHHHHHH-hhcCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 038748 68 ETVEQVLK-FSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYV 146 (482)
Q Consensus 68 ~~~~~ll~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 146 (482)
..+..+=+ ...+++++|.+....+.. ..+-+...+..=+-++.+.+++++|+.+.+.-......+.. +.--..+..
T Consensus 14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~--~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~-~fEKAYc~Y 90 (652)
T KOG2376|consen 14 ALLTDLNRHGKNGEYEEAVKTANKILS--IVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSF-FFEKAYCEY 90 (652)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHh--cCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchh-hHHHHHHHH
Confidence 33344333 446778888888887776 55556666777777778888888888555432221111111 122244556
Q ss_pred hhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhC
Q 038748 147 VADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDG 198 (482)
Q Consensus 147 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 198 (482)
+.+..++|+..++.... .|..+...-...+.+.|++++|..+|+.+.+
T Consensus 91 rlnk~Dealk~~~~~~~----~~~~ll~L~AQvlYrl~~ydealdiY~~L~k 138 (652)
T KOG2376|consen 91 RLNKLDEALKTLKGLDR----LDDKLLELRAQVLYRLERYDEALDIYQHLAK 138 (652)
T ss_pred HcccHHHHHHHHhcccc----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 77888888888873222 2333555566777788888888888888743
No 69
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=8e-09 Score=93.90 Aligned_cols=268 Identities=9% Similarity=-0.047 Sum_probs=139.9
Q ss_pred cCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHH
Q 038748 78 YSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITT 157 (482)
Q Consensus 78 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 157 (482)
..++....++++.+.. -.++....+..-|..+...|+..+-..+=..+.+..|....+|-++.-.|...|+..+|.+.
T Consensus 257 ~c~f~~c~kit~~lle--~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry 334 (611)
T KOG1173|consen 257 GCRFKECLKITEELLE--KDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRY 334 (611)
T ss_pred cChHHHHHHHhHHHHh--hCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHH
Confidence 3455566666665554 34444555555555666666666665555566665555555566666666666666666666
Q ss_pred HHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCC
Q 038748 158 FDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWD 237 (482)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 237 (482)
|.+....+.. =...|-...+.|+-.|..|+|...+....+-.+..-.-+.-+.--|.+.++++.|.++|.+.. ++.
T Consensus 335 ~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~---ai~ 410 (611)
T KOG1173|consen 335 FSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQAL---AIA 410 (611)
T ss_pred HHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHH---hcC
Confidence 6555442211 123455556666666666666665554333222222222333344555666666666666553 555
Q ss_pred CCChhhHHHHHHHHHccCCChHHHHHHHHHHHHc----C--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCC
Q 038748 238 PDNVPAYDSYLITLLKGCDGIYETVNSLKRMMER----G--CNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRP 311 (482)
Q Consensus 238 p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~----~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 311 (482)
|.++...+.+....... +.+.+|..+|+..... + ..--..+++.+..+|.+.+.+++|...++..+.. .+.
T Consensus 411 P~Dplv~~Elgvvay~~-~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l--~~k 487 (611)
T KOG1173|consen 411 PSDPLVLHELGVVAYTY-EEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL--SPK 487 (611)
T ss_pred CCcchhhhhhhheeehH-hhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc--CCC
Confidence 65555555555555555 6666666666554421 0 0012233455555555555555555555555411 133
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 038748 312 DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFE 356 (482)
Q Consensus 312 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 356 (482)
+..++.++.-.|...|+++.|.+.|++... +.|+..+...++.
T Consensus 488 ~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 488 DASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLK 530 (611)
T ss_pred chhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHH
Confidence 455555555555555555555555555443 3455444444443
No 70
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.26 E-value=1.8e-09 Score=91.37 Aligned_cols=236 Identities=9% Similarity=-0.024 Sum_probs=180.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 038748 203 DNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKL 282 (482)
Q Consensus 203 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 282 (482)
|-.--+.+.++|.+.|.+.+|++.|+...+. .| -+.+|-.+-..|.+. +++..|+.++.+-.+. .+-|......
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q---~~-~~dTfllLskvY~ri-dQP~~AL~~~~~gld~-fP~~VT~l~g 295 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ---FP-HPDTFLLLSKVYQRI-DQPERALLVIGEGLDS-FPFDVTYLLG 295 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhc---CC-chhHHHHHHHHHHHh-ccHHHHHHHHhhhhhc-CCchhhhhhh
Confidence 4444456778888888888888888777643 33 345777777778777 8888888888776653 2333333445
Q ss_pred HHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC
Q 038748 283 AFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGR 362 (482)
Q Consensus 283 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 362 (482)
+.+.+-..++.++|.++++...+.. +.++....++...|.-.++++-|+.+|..+.+-|+. +...|+.+.-+|.-.+
T Consensus 296 ~ARi~eam~~~~~a~~lYk~vlk~~--~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaq 372 (478)
T KOG1129|consen 296 QARIHEAMEQQEDALQLYKLVLKLH--PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQ 372 (478)
T ss_pred hHHHHHHHHhHHHHHHHHHHHHhcC--CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhc
Confidence 5667777888999999999987444 345666667777888889999999999999999986 7788888888899999
Q ss_pred CHHHHHHHHHHHHhCCCccC--hhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHH
Q 038748 363 KLWEASGLFNEMVKNENVLN--HENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKY 440 (482)
Q Consensus 363 ~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 440 (482)
+++-++.-|.+....--.|+ ...|-.+.......||+..|.+.|+-....+- .+...+|.|.-.-.+.|++++|..+
T Consensus 373 Q~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~-~h~ealnNLavL~~r~G~i~~Arsl 451 (478)
T KOG1129|consen 373 QIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA-QHGEALNNLAVLAARSGDILGARSL 451 (478)
T ss_pred chhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCc-chHHHHHhHHHHHhhcCchHHHHHH
Confidence 99999999998877644333 34677777778889999999999998886542 3447888888888899999999999
Q ss_pred HHHHHHcC
Q 038748 441 AKGMAEKG 448 (482)
Q Consensus 441 ~~~m~~~~ 448 (482)
++......
T Consensus 452 l~~A~s~~ 459 (478)
T KOG1129|consen 452 LNAAKSVM 459 (478)
T ss_pred HHHhhhhC
Confidence 99877543
No 71
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.25 E-value=1.2e-06 Score=81.30 Aligned_cols=386 Identities=10% Similarity=0.080 Sum_probs=217.3
Q ss_pred cCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHhhCC
Q 038748 78 YSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKEN-------VLSLATFASVFSSYVVADR 150 (482)
Q Consensus 78 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~li~~~~~~~~ 150 (482)
.+-|+-++.+++...+ .++..-+-.|..+++.+++++|.+.+....... ..+...|..+-+..++.-+
T Consensus 151 ~~lPets~rvyrRYLk-----~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~ 225 (835)
T KOG2047|consen 151 HGLPETSIRVYRRYLK-----VAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPD 225 (835)
T ss_pred CCChHHHHHHHHHHHh-----cCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcc
Confidence 4555667777776555 455667777888888888888888887766543 2345556665555555433
Q ss_pred hhh---HHHHHHHHHhcCCCCCH--hhHHHHHHHHHhcCChHhHHHHHHH-hhCCCCCCHHHHHHHHHHHHh--------
Q 038748 151 VKD---AITTFDVMEQYGCKHDV--FALNSLLSAICRDGKTIDAWQFLRV-VDGRIKPDNDTYAILLEGWEK-------- 216 (482)
Q Consensus 151 ~~~---a~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~g~~~~a~~~~~~-~~~~~~~~~~~~~~l~~~~~~-------- 216 (482)
.-. ..++++.+.. .-+|. ..|++|.+-|.+.|.+++|..+|++ |.. ..+..-|..+.++|+.
T Consensus 226 ~~~slnvdaiiR~gi~--rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~ 301 (835)
T KOG2047|consen 226 KVQSLNVDAIIRGGIR--RFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAA 301 (835)
T ss_pred hhcccCHHHHHHhhcc--cCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHH
Confidence 222 2333333332 22343 4578888888888888888888887 433 1122223333333322
Q ss_pred --------cC------CHHHHHHHHHHhHHh---------cCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCC
Q 038748 217 --------ER------DVANAKKTFGEMVIE---------VGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGC 273 (482)
Q Consensus 217 --------~~------~~~~a~~~~~~~~~~---------~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~ 273 (482)
.| +++-....|+.+..+ ...+|.++..|..-.. +.. |+..+....|.+..+. +
T Consensus 302 ~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e-~~~~~~i~tyteAv~~-v 377 (835)
T KOG2047|consen 302 KMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYE-GNAAEQINTYTEAVKT-V 377 (835)
T ss_pred HHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhc-CChHHHHHHHHHHHHc-c
Confidence 11 223333444444322 1123333433332222 223 5677777777777653 2
Q ss_pred CC------CHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 038748 274 NP------GMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD---THMYNMMISLYCYSNETGAAMKLLDEMVYNGA 344 (482)
Q Consensus 274 ~~------~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 344 (482)
.| -...|..+...|-..|+++.|..+|++.. +-..+-- ..+|..-...=.+..+++.|+++++......-
T Consensus 378 dP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~-~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~ 456 (835)
T KOG2047|consen 378 DPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKAT-KVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPT 456 (835)
T ss_pred CcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhh-cCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCC
Confidence 22 13457777888888999999999998875 3222111 33455555555567778888887776543211
Q ss_pred C----------C-------CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHH
Q 038748 345 F----------P-------DIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWK 407 (482)
Q Consensus 345 ~----------p-------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 407 (482)
. | +...|...+......|-++....+++.+++..+. ++.......-.+-...-++++.++|+
T Consensus 457 ~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YE 535 (835)
T KOG2047|consen 457 NPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYE 535 (835)
T ss_pred chhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 1 1 1233444455555567788888888888876654 22222222223334556778888877
Q ss_pred HHHHcCCCCCh-hhHHHHHHHHHh---cCChhHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHHhccHHHHHHHHHHH
Q 038748 408 YMIENHCSDLS-ETGNLLVAGLCD---MHMLPEAVKYAKGMAEKGIQVTPF--ALSKLKQILIKARKEAVYEELLKKC 479 (482)
Q Consensus 408 ~m~~~~~~p~~-~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~m 479 (482)
.-+..--.|+. ..|+..+..+.+ .-..+.|..+|++..+ |.+|... .|......=-+-|....|++++++.
T Consensus 536 rgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyera 612 (835)
T KOG2047|consen 536 RGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERA 612 (835)
T ss_pred cCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 66554333444 567777665553 2357888888888887 5555442 2222222223446667777777664
No 72
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.24 E-value=1.3e-08 Score=94.93 Aligned_cols=198 Identities=15% Similarity=0.082 Sum_probs=105.0
Q ss_pred HHHHHHhcCChhHHHHHHHHhhcc----cC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CCCH-h
Q 038748 283 AFEECLTGQNLRGAEFIWGAMVGR----IG-FRP-DTHMYNMMISLYCYSNETGAAMKLLDEMVYN-----GA-FPDI-Q 349 (482)
Q Consensus 283 li~~~~~~g~~~~a~~~~~~~~~~----~~-~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----g~-~p~~-~ 349 (482)
+...|...+++++|..+|++++.. .| ..| -..+++.|..+|.+.|++++|...++...+- |. .|.. .
T Consensus 247 ~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~ 326 (508)
T KOG1840|consen 247 LALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAA 326 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHH
Confidence 334444555555555555544311 01 011 1234555555566666666655555443321 11 1111 1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCcc----ChhhHHHHHHHHhcCCChHHHHHHHHHHHHc----CC--CC
Q 038748 350 TYNILFEFLVKGRKLWEASGLFNEMVKN---ENVL----NHENCRAAVRVYMDSDDPYVAIKFWKYMIEN----HC--SD 416 (482)
Q Consensus 350 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~--~p 416 (482)
.++.+...|+..+++++|..+++...+. -+.+ -..+++.|...|...|++++|.++++..+.. +- .+
T Consensus 327 ~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~ 406 (508)
T KOG1840|consen 327 QLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDY 406 (508)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcCh
Confidence 2444555566666777776666655442 1111 2345666777777777777777777766531 11 11
Q ss_pred C-hhhHHHHHHHHHhcCChhHHHHHHHHHH----HcCC-CCC-HHHHHHHHHHHHHhccHHHHHHHHHHHh
Q 038748 417 L-SETGNLLVAGLCDMHMLPEAVKYAKGMA----EKGI-QVT-PFALSKLKQILIKARKEAVYEELLKKCK 480 (482)
Q Consensus 417 ~-~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~-~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 480 (482)
. ...++.|...|.+.+++++|.++|.+.. ..|. .|+ ..+|..|...|.+.|+++.|+++.++..
T Consensus 407 ~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 407 GVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 1 2455666667777777777777776543 2232 122 2567777777777777777777766543
No 73
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=6.9e-08 Score=84.57 Aligned_cols=286 Identities=8% Similarity=0.036 Sum_probs=162.1
Q ss_pred CCCcHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhh-HHHHHHHHHhcCChHhHH
Q 038748 114 NCLFDAMWDAIKSMKKEN--VLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFA-LNSLLSAICRDGKTIDAW 190 (482)
Q Consensus 114 ~~~~~~a~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~g~~~~a~ 190 (482)
.++...|...+-.+.... +-+......+..++...|+.++|...|+.....+ |+..+ ...-.-.+.+.|+.+...
T Consensus 209 ~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~MD~Ya~LL~~eg~~e~~~ 286 (564)
T KOG1174|consen 209 NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEAMDLYAVLLGQEGGCEQDS 286 (564)
T ss_pred hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhhHHHHHHHHHhccCHhhHH
Confidence 344444444444333333 3466777777777777777777777777765532 32211 112222344566666666
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHH
Q 038748 191 QFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMME 270 (482)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~ 270 (482)
.+...+-....-...-|-.-.......+++..|+.+.++.. ...|.+...+-.-...+... ++.++|.-.|+..+.
T Consensus 287 ~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I---~~~~r~~~alilKG~lL~~~-~R~~~A~IaFR~Aq~ 362 (564)
T KOG1174|consen 287 ALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCI---DSEPRNHEALILKGRLLIAL-ERHTQAVIAFRTAQM 362 (564)
T ss_pred HHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHh---ccCcccchHHHhccHHHHhc-cchHHHHHHHHHHHh
Confidence 65555433222333334444444455667777777766665 34555555555555566666 777777777776655
Q ss_pred cCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHH-HHHH-hcCCHHHHHHHHHHHHHCCCCCCH
Q 038748 271 RGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMI-SLYC-YSNETGAAMKLLDEMVYNGAFPDI 348 (482)
Q Consensus 271 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li-~~~~-~~~~~~~a~~~~~~m~~~g~~p~~ 348 (482)
.. +-+...|..++.+|...|++.+|.-+-....+.. ..+..+.+.+- ..+. ...--++|.+++++-... .|+.
T Consensus 363 La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~--~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y 437 (564)
T KOG1174|consen 363 LA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLF--QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIY 437 (564)
T ss_pred cc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHh--hcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCcc
Confidence 32 2356677777777777777777766555543222 22333333331 1111 122235676666665543 4443
Q ss_pred -hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 038748 349 -QTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIEN 412 (482)
Q Consensus 349 -~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 412 (482)
...+.+...|...|..+.+..+++.... ..||....+.|.+.+...+.+++|++.|......
T Consensus 438 ~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 438 TPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 2345555666667777777777777665 3566677777777777777777777777766653
No 74
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.18 E-value=1.7e-08 Score=94.24 Aligned_cols=242 Identities=14% Similarity=0.023 Sum_probs=144.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhHHh----cCC-CCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHc-----C
Q 038748 203 DNDTYAILLEGWEKERDVANAKKTFGEMVIE----VGW-DPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMER-----G 272 (482)
Q Consensus 203 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~-----~ 272 (482)
-..+...+...|...|+++.|+.+++...+. .|. .|.-....+.+...|... +++++|..+|+++..- |
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~-~k~~eAv~ly~~AL~i~e~~~G 276 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSL-GKYDEAVNLYEEALTIREEVFG 276 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHhcC
Confidence 3445555666666666666666666655432 121 222222333355556666 7777777777766541 2
Q ss_pred -CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhcc----cCC-CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHC--
Q 038748 273 -CNP-GMTFFKLAFEECLTGQNLRGAEFIWGAMVGR----IGF-RPDT-HMYNMMISLYCYSNETGAAMKLLDEMVYN-- 342 (482)
Q Consensus 273 -~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~-- 342 (482)
..| -..+++.|..+|.+.|++++|...++...+- .+. .|.+ ..++.+...++..+++++|..++....+.
T Consensus 277 ~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~ 356 (508)
T KOG1840|consen 277 EDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYL 356 (508)
T ss_pred CCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 111 2345555666677777777766666554311 111 1222 23555666677778888887777655432
Q ss_pred -CCCC----CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC----C--cc-ChhhHHHHHHHHhcCCChHHHHHHHHHHH
Q 038748 343 -GAFP----DIQTYNILFEFLVKGRKLWEASGLFNEMVKNE----N--VL-NHENCRAAVRVYMDSDDPYVAIKFWKYMI 410 (482)
Q Consensus 343 -g~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 410 (482)
-..+ -..+++.+...|...|++++|.+++++++... . .+ ....++-+...|.+.+++++|.++|.+..
T Consensus 357 ~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~ 436 (508)
T KOG1840|consen 357 DAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAK 436 (508)
T ss_pred hhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence 1111 23567788888888888888888888776531 1 11 23456677777888888888888777654
Q ss_pred H----cCC-CCCh-hhHHHHHHHHHhcCChhHHHHHHHHHH
Q 038748 411 E----NHC-SDLS-ETGNLLVAGLCDMHMLPEAVKYAKGMA 445 (482)
Q Consensus 411 ~----~~~-~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~ 445 (482)
. .|. .|+. .+|..|...|...|++++|.++.+...
T Consensus 437 ~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 437 DIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 2 222 2333 677888888888888888888877654
No 75
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.18 E-value=4.1e-07 Score=84.49 Aligned_cols=89 Identities=9% Similarity=0.013 Sum_probs=40.1
Q ss_pred HHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCH--HHHHHHHHHHHhc
Q 038748 249 ITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDT--HMYNMMISLYCYS 326 (482)
Q Consensus 249 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~ 326 (482)
..+... |++++|.+.+++..+.. +.+...+..+...+...|++++|...+....+.....++. ..|..+...+...
T Consensus 122 ~~~~~~-G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~ 199 (355)
T cd05804 122 FGLEEA-GQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLER 199 (355)
T ss_pred HHHHHc-CCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHC
Confidence 344444 55555555555555432 2223344444455555555555555555443211111121 1233444445555
Q ss_pred CCHHHHHHHHHHH
Q 038748 327 NETGAAMKLLDEM 339 (482)
Q Consensus 327 ~~~~~a~~~~~~m 339 (482)
|++++|..++++.
T Consensus 200 G~~~~A~~~~~~~ 212 (355)
T cd05804 200 GDYEAALAIYDTH 212 (355)
T ss_pred CCHHHHHHHHHHH
Confidence 5555555555554
No 76
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.17 E-value=5.5e-08 Score=78.70 Aligned_cols=197 Identities=13% Similarity=-0.007 Sum_probs=164.1
Q ss_pred hhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHH
Q 038748 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAIC 181 (482)
Q Consensus 102 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 181 (482)
.+..-+.-.|...|++..|..-+++..+.++.+..+|..+...|-+.|..+.|.+.|+...+... -+..+.|.--..+|
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p-~~GdVLNNYG~FLC 114 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAP-NNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCC-CccchhhhhhHHHH
Confidence 34556677888999999999999999999988888999999999999999999999999988653 35677888888889
Q ss_pred hcCChHhHHHHHHHhhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChH
Q 038748 182 RDGKTIDAWQFLRVVDG--RIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIY 259 (482)
Q Consensus 182 ~~g~~~~a~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~ 259 (482)
..|.+++|.+.|+.... ....-..+|..+.-+..+.|+.+.|...|++... ..|+...+.-.+....... |++.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~---~dp~~~~~~l~~a~~~~~~-~~y~ 190 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE---LDPQFPPALLELARLHYKA-GDYA 190 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH---hCcCCChHHHHHHHHHHhc-ccch
Confidence 99999999999998543 3444556888888888999999999999998874 4777777888888889998 9999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 038748 260 ETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMV 304 (482)
Q Consensus 260 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 304 (482)
.|..+++.....+. ++....-..|..-...|+.+.+.+.=..+.
T Consensus 191 ~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~ 234 (250)
T COG3063 191 PARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQ 234 (250)
T ss_pred HHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 99999998888765 788888888888888899888887777764
No 77
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.16 E-value=7e-07 Score=84.59 Aligned_cols=377 Identities=10% Similarity=0.006 Sum_probs=249.6
Q ss_pred CCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCC-HhhHH
Q 038748 96 NDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHD-VFALN 174 (482)
Q Consensus 96 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~ 174 (482)
...-|...|..+.-++.+.|+++.+.+.|++....-....+.|+.+...|...|.-..|..+++.-......|+ ...+-
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 34467888888888999999999999999998876667778899999999999998889998887765432343 33333
Q ss_pred HHHHHHH-hcCChHhHHHHHHHhhC-----CCCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHhHHhcCCC
Q 038748 175 SLLSAIC-RDGKTIDAWQFLRVVDG-----RIKPDNDTYAILLEGWEKE-----------RDVANAKKTFGEMVIEVGWD 237 (482)
Q Consensus 175 ~ll~~~~-~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~ 237 (482)
..-..|. +.+..++++.+-.+..+ .-......|..+.-+|... ....++++.+++..+. .
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~---d 474 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQF---D 474 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhc---C
Confidence 3333343 33666666665554322 1122334455554444321 2234567777777644 4
Q ss_pred CCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCC-----
Q 038748 238 PDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD----- 312 (482)
Q Consensus 238 p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----- 312 (482)
|.|..+...+..-+... ++++.|++..++..+.+-.-+...|..+.-.+...+++.+|+.+.+...++.|..-.
T Consensus 475 ~~dp~~if~lalq~A~~-R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~ 553 (799)
T KOG4162|consen 475 PTDPLVIFYLALQYAEQ-RQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGK 553 (799)
T ss_pred CCCchHHHHHHHHHHHH-HhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhh
Confidence 44444444444455555 789999999999998866678888888888888999999999998887766543110
Q ss_pred -------------HHHHHHHHHHHHh---------c--------------CCHHHHHHHHHHH--------HHCC-----
Q 038748 313 -------------THMYNMMISLYCY---------S--------------NETGAAMKLLDEM--------VYNG----- 343 (482)
Q Consensus 313 -------------~~~~~~li~~~~~---------~--------------~~~~~a~~~~~~m--------~~~g----- 343 (482)
..|...++..+-. . ++..+|.+....+ ...|
T Consensus 554 ~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~L 633 (799)
T KOG4162|consen 554 IHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKL 633 (799)
T ss_pred hhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhccccccc
Confidence 1122222222210 0 0111111111110 0011
Q ss_pred ----CC--CC------HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHH
Q 038748 344 ----AF--PD------IQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIE 411 (482)
Q Consensus 344 ----~~--p~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 411 (482)
+. |+ ...|......+.+.++.++|...+.+..+.. ......|......+...|..++|.+.|.....
T Consensus 634 p~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ 712 (799)
T KOG4162|consen 634 PSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALA 712 (799)
T ss_pred CcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh
Confidence 00 11 1123344556677788888888887776643 33555666667778888999999999998877
Q ss_pred cCCCCCh-hhHHHHHHHHHhcCChhHHHH--HHHHHHHcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHh
Q 038748 412 NHCSDLS-ETGNLLVAGLCDMHMLPEAVK--YAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKCK 480 (482)
Q Consensus 412 ~~~~p~~-~~~~~li~~~~~~g~~~~A~~--~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 480 (482)
+.|+. .+..++...+.+.|+..-|.. ++..+.+.+. .++..|..+...+.+.|+.+.|.+.|....
T Consensus 713 --ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp-~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~ 781 (799)
T KOG4162|consen 713 --LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDP-LNHEAWYYLGEVFKKLGDSKQAAECFQAAL 781 (799)
T ss_pred --cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence 44554 677889999999998888887 9999998874 578999999999999999999999887643
No 78
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.15 E-value=3.9e-07 Score=76.58 Aligned_cols=336 Identities=13% Similarity=0.049 Sum_probs=216.0
Q ss_pred CCCCCHHHHHHHHH--hhcCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHH
Q 038748 62 LIRVSQETVEQVLK--FSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFA 139 (482)
Q Consensus 62 ~~~~~~~~~~~ll~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 139 (482)
|+.+....+..++. ..-.+..+|++++..... ..+.+....+.+...|-...++..|-..++++....+.-..---
T Consensus 5 g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~E--r~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrl 82 (459)
T KOG4340|consen 5 GAQIPEGEFTAVVYRLIRDARYADAIQLLGSELE--RSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRL 82 (459)
T ss_pred cccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHh--cCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHH
Confidence 33333343444444 234566778887775544 34457888899999999999999999999998876542222222
Q ss_pred HHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHH--HhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 038748 140 SVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAI--CRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKE 217 (482)
Q Consensus 140 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 217 (482)
--.+.+.+.+.+..|+.+...|... ++...-..-+.+. ...+++..+..+.++... ..+..+.+...-...+.
T Consensus 83 Y~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~--en~Ad~~in~gCllyke 157 (459)
T KOG4340|consen 83 YQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS--ENEADGQINLGCLLYKE 157 (459)
T ss_pred HHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccC--CCccchhccchheeecc
Confidence 3356677889999999999888652 3332222223333 346788888888887653 23444555555566789
Q ss_pred CCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCC-------------CHH------
Q 038748 218 RDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNP-------------GMT------ 278 (482)
Q Consensus 218 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~-------------~~~------ 278 (482)
|+++.|.+-|+...+-.|..| ..+|+..+. ..+. ++++.|++...++.++|+.- |..
T Consensus 158 gqyEaAvqkFqaAlqvsGyqp--llAYniALa-Hy~~-~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~ 233 (459)
T KOG4340|consen 158 GQYEAAVQKFQAALQVSGYQP--LLAYNLALA-HYSS-RQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTL 233 (459)
T ss_pred ccHHHHHHHHHHHHhhcCCCc--hhHHHHHHH-HHhh-hhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchH
Confidence 999999999999988788888 357766554 4555 89999999999998876431 211
Q ss_pred ---------HHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh
Q 038748 279 ---------FFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQ 349 (482)
Q Consensus 279 ---------~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 349 (482)
.+|.-...+.+.|+++.|.+-+-+|..+.....|++|...+.-.= ..+++.+..+-+.-+.+.+.. ...
T Consensus 234 ~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPf-P~E 311 (459)
T KOG4340|consen 234 VLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPF-PPE 311 (459)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCC-ChH
Confidence 122222334577899999999988876666667777766554222 234455555555555555443 457
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-ccChhhHHHHHHHHhcCCChHHHHHHHHHHH
Q 038748 350 TYNILFEFLVKGRKLWEASGLFNEMVKNEN-VLNHENCRAAVRVYMDSDDPYVAIKFWKYMI 410 (482)
Q Consensus 350 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 410 (482)
||..++-.||++.-++.|-.++.+-...-. -.+...|+.+=....-.-..++|.+-++.+.
T Consensus 312 TFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 312 TFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred HHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 888888899999888888887765322211 1233344433222233456777776665543
No 79
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.14 E-value=1.5e-07 Score=84.26 Aligned_cols=216 Identities=11% Similarity=-0.053 Sum_probs=121.3
Q ss_pred CCcHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHH
Q 038748 115 CLFDAMWDAIKSMKKENVL----SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAW 190 (482)
Q Consensus 115 ~~~~~a~~~~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 190 (482)
+..+.++.-+.++...... ....|..+...+...|++++|...|++..+... .+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHHH
Confidence 4556666666666654321 234566666667777777777777777766542 24566777777777777777777
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHH-HHccCCChHHHHHHHHHHH
Q 038748 191 QFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLIT-LLKGCDGIYETVNSLKRMM 269 (482)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~-~~~~~~~~~~a~~~~~~m~ 269 (482)
+.|+...+..+.+..+|..+..++...|++++|.+.|+.... ..|++. +..+... .... ++.++|.+.|.+..
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~---~~P~~~--~~~~~~~l~~~~-~~~~~A~~~l~~~~ 192 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ---DDPNDP--YRALWLYLAESK-LDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCH--HHHHHHHHHHcc-CCHHHHHHHHHHHH
Confidence 777775544444566677777777777777777777777653 355443 1122222 2233 66777777775544
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 038748 270 ERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRP-----DTHMYNMMISLYCYSNETGAAMKLLDEMVYN 342 (482)
Q Consensus 270 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 342 (482)
... .++...+ . ......|+...+ +.+..+.+.....+ ....|..+...+.+.|++++|...|++..+.
T Consensus 193 ~~~-~~~~~~~-~--~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 193 EKL-DKEQWGW-N--IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred hhC-CccccHH-H--HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 322 2222111 1 222234444433 23333321111111 2245666666677777777777777766664
No 80
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.12 E-value=1.1e-06 Score=81.58 Aligned_cols=198 Identities=12% Similarity=-0.033 Sum_probs=122.5
Q ss_pred HhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHH
Q 038748 101 PYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLS---LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLL 177 (482)
Q Consensus 101 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 177 (482)
...|..+...+...|+.+.+...+....+....+ ..........+...|++++|.++++...+... .+...+.. .
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P-~~~~a~~~-~ 83 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYP-RDLLALKL-H 83 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHH-h
Confidence 4456666666666777777766666666554322 22223334455667888888888888776532 23333332 1
Q ss_pred HHHH----hcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHc
Q 038748 178 SAIC----RDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLK 253 (482)
Q Consensus 178 ~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~ 253 (482)
..+. ..+..+.+.+.++......+........+...+...|++++|...+++... ..|++...+..+...+..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~---~~p~~~~~~~~la~i~~~ 160 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALE---LNPDDAWAVHAVAHVLEM 160 (355)
T ss_pred HHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCcHHHHHHHHHHHH
Confidence 1222 234455555555442223333444555666777888888888888888863 467666677777777777
Q ss_pred cCCChHHHHHHHHHHHHcCC-CCCH--HHHHHHHHHHHhcCChhHHHHHHHHhh
Q 038748 254 GCDGIYETVNSLKRMMERGC-NPGM--TFFKLAFEECLTGQNLRGAEFIWGAMV 304 (482)
Q Consensus 254 ~~~~~~~a~~~~~~m~~~~~-~~~~--~~~~~li~~~~~~g~~~~a~~~~~~~~ 304 (482)
. |++++|...+++...... .++. ..|..+...+...|++++|..++++..
T Consensus 161 ~-g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 161 Q-GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred c-CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 7 888888888887766421 1222 234466777788888888888888774
No 81
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.12 E-value=6e-08 Score=86.76 Aligned_cols=148 Identities=12% Similarity=-0.013 Sum_probs=84.4
Q ss_pred ChhhHHHHHHHHHhcC-CCCC--HhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 038748 150 RVKDAITTFDVMEQYG-CKHD--VFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKT 226 (482)
Q Consensus 150 ~~~~a~~~~~~~~~~~-~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 226 (482)
..+.++.-+.++.... ..|+ ...|..+...+...|+.++|...|++.....+.+...|+.+...+...|++++|...
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~ 120 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEA 120 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4455555555555421 1121 234555666666667777777766665554455666677777777777777777777
Q ss_pred HHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 038748 227 FGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAM 303 (482)
Q Consensus 227 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 303 (482)
|+... .+.|++..++..+...+... |++++|++.|+...+.. |+..........+...++.++|...|...
T Consensus 121 ~~~Al---~l~P~~~~a~~~lg~~l~~~-g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~ 191 (296)
T PRK11189 121 FDSVL---ELDPTYNYAYLNRGIALYYG-GRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQR 191 (296)
T ss_pred HHHHH---HhCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 76665 34666666666666666666 77777777776666532 32221111222233445666666666544
No 82
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.11 E-value=8.8e-07 Score=76.29 Aligned_cols=377 Identities=10% Similarity=0.026 Sum_probs=230.4
Q ss_pred CCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHH
Q 038748 79 SHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTF 158 (482)
Q Consensus 79 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 158 (482)
.+...|..+++..... +..-...+--.+...+-+.|++++|...|.-+.+..-++...+..|.-++.-.|.+.+|..+-
T Consensus 36 rDytGAislLefk~~~-~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~ 114 (557)
T KOG3785|consen 36 RDYTGAISLLEFKLNL-DREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIA 114 (557)
T ss_pred ccchhHHHHHHHhhcc-chhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHH
Confidence 4556666666643331 111112223334456678999999999999999887778888888888888899999999887
Q ss_pred HHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC
Q 038748 159 DVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDP 238 (482)
Q Consensus 159 ~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p 238 (482)
....+ ++-....|++...+.|+-++-..+.+.+... ..--.++.......-.+.+|++++.++... .|
T Consensus 115 ~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d---n~ 182 (557)
T KOG3785|consen 115 EKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT----LEDQLSLASVHYMRMHYQEAIDVYKRVLQD---NP 182 (557)
T ss_pred hhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc---Ch
Confidence 66533 3444555667777888888777776666542 233445556666667899999999999754 44
Q ss_pred CChhhHHHH-HHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--cCCh----------------------
Q 038748 239 DNVPAYDSY-LITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLT--GQNL---------------------- 293 (482)
Q Consensus 239 ~~~~~~~~l-~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~--~g~~---------------------- 293 (482)
.....|.- ..+|.+. +-++-+.++++...+. ++.+....+.......+ .|+.
T Consensus 183 -ey~alNVy~ALCyyKl-DYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l 259 (557)
T KOG3785|consen 183 -EYIALNVYMALCYYKL-DYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYL 259 (557)
T ss_pred -hhhhhHHHHHHHHHhc-chhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHH
Confidence 33444443 4456666 8888888888776654 22223333332222222 1221
Q ss_pred -----------hHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH-HH--
Q 038748 294 -----------RGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEF-LV-- 359 (482)
Q Consensus 294 -----------~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~-~~-- 359 (482)
+.|++++-.+. ++-| ..--.|+--|.+.+++++|..+.+++.- ..|-......+..+ +.
T Consensus 260 ~rHNLVvFrngEgALqVLP~L~---~~IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe 332 (557)
T KOG3785|consen 260 CRHNLVVFRNGEGALQVLPSLM---KHIP--EARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQE 332 (557)
T ss_pred HHcCeEEEeCCccHHHhchHHH---hhCh--HhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhh
Confidence 11222222111 1112 2233455667889999999988877542 12322222222221 11
Q ss_pred --hcCCHHHHHHHHHHHHhCCCccChhh-HHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhH
Q 038748 360 --KGRKLWEASGLFNEMVKNENVLNHEN-CRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPE 436 (482)
Q Consensus 360 --~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 436 (482)
......-|.+.|+..-+++...|... -.++..++.-..++++.+-.++.+...-...| ..--.+..+++..|.+.+
T Consensus 333 ~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD-~Fn~N~AQAk~atgny~e 411 (557)
T KOG3785|consen 333 TGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDD-DFNLNLAQAKLATGNYVE 411 (557)
T ss_pred cCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc-hhhhHHHHHHHHhcChHH
Confidence 12235567777777666655444332 22444555555678888888887776433233 333346788999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 038748 437 AVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKC 479 (482)
Q Consensus 437 A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 479 (482)
|.++|-+.....++.+..-...|.++|.+.|+.+-|.+++-++
T Consensus 412 aEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~ 454 (557)
T KOG3785|consen 412 AEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT 454 (557)
T ss_pred HHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc
Confidence 9999988776655544444455667899999998888776554
No 83
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.11 E-value=3e-06 Score=77.18 Aligned_cols=375 Identities=10% Similarity=0.086 Sum_probs=219.6
Q ss_pred CCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHH
Q 038748 96 NDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNS 175 (482)
Q Consensus 96 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 175 (482)
..+-|..+|+.||+-+... ..+++.+.++++...-+.+...|..-|..-...++++....+|.+....-+ +...|..
T Consensus 15 ~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL--nlDLW~l 91 (656)
T KOG1914|consen 15 ENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL--NLDLWKL 91 (656)
T ss_pred cCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--hHhHHHH
Confidence 4567888888888877766 888888889888887777788888888888888889998888888876533 4555655
Q ss_pred HHHHHHh-cCChHh----HHHHHHHhhC--CCC-CCHHHHHHHHHH---------HHhcCCHHHHHHHHHHhHHhcCCCC
Q 038748 176 LLSAICR-DGKTID----AWQFLRVVDG--RIK-PDNDTYAILLEG---------WEKERDVANAKKTFGEMVIEVGWDP 238 (482)
Q Consensus 176 ll~~~~~-~g~~~~----a~~~~~~~~~--~~~-~~~~~~~~l~~~---------~~~~~~~~~a~~~~~~~~~~~~~~p 238 (482)
-++---+ .|+... ..+.|+-... |.. .+..+|+..+.. |....+++...++++++.. .|
T Consensus 92 Yl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~----tP 167 (656)
T KOG1914|consen 92 YLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALV----TP 167 (656)
T ss_pred HHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhc----Cc
Confidence 5543322 233222 2223333211 211 223344444433 2334456666677776653 22
Q ss_pred C-C-------hhhHHHHHHHHHcc------CCChHHHHHHHHHHHH--cCCCCCH-------------------------
Q 038748 239 D-N-------VPAYDSYLITLLKG------CDGIYETVNSLKRMME--RGCNPGM------------------------- 277 (482)
Q Consensus 239 ~-~-------~~~~~~l~~~~~~~------~~~~~~a~~~~~~m~~--~~~~~~~------------------------- 277 (482)
- + ...|..-|+..... ...+..|.++++++.. .|+....
T Consensus 168 m~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wE 247 (656)
T KOG1914|consen 168 MHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWE 247 (656)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHH
Confidence 1 0 01111111111110 0234444444444432 1211110
Q ss_pred ------------------HHHHHHHH---------------------HHHhcCC-------hhHHHHHHHHhhcccCCCC
Q 038748 278 ------------------TFFKLAFE---------------------ECLTGQN-------LRGAEFIWGAMVGRIGFRP 311 (482)
Q Consensus 278 ------------------~~~~~li~---------------------~~~~~g~-------~~~a~~~~~~~~~~~~~~~ 311 (482)
.+|...+. .+...|+ .+++..+++..+ ..-..-
T Consensus 248 ksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I-~~l~~~ 326 (656)
T KOG1914|consen 248 KSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAI-EGLLKE 326 (656)
T ss_pred hcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHH-HHHHHH
Confidence 11111111 1111122 223333333332 111111
Q ss_pred CHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcc-ChhhHH
Q 038748 312 DTHMYNMMISLYCYS---NETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVL-NHENCR 387 (482)
Q Consensus 312 ~~~~~~~li~~~~~~---~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~ 387 (482)
+..+|..+.+.--.. +..+.....++++...-..--..+|...|..-.+..-++.|..+|.+..+.+..+ +...++
T Consensus 327 ~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~ 406 (656)
T KOG1914|consen 327 NKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAA 406 (656)
T ss_pred HHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHH
Confidence 222222222111111 1245555666666554222233567778888888888999999999999988777 677788
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHH
Q 038748 388 AAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTP--FALSKLKQILIK 465 (482)
Q Consensus 388 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~~l~~~~~~ 465 (482)
+++..|| .++.+-|.++|+.-.+. +.-+...-...+.-+...++-..|..+|++....++.|+. .+|..++..=..
T Consensus 407 A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~ 484 (656)
T KOG1914|consen 407 ALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESN 484 (656)
T ss_pred HHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHh
Confidence 8888776 58899999999987654 2223344466777788889999999999999888766654 789999999999
Q ss_pred hccHHHHHHHHHHHh
Q 038748 466 ARKEAVYEELLKKCK 480 (482)
Q Consensus 466 ~g~~~~a~~~~~~m~ 480 (482)
-|+.+.+.++-+++.
T Consensus 485 vGdL~si~~lekR~~ 499 (656)
T KOG1914|consen 485 VGDLNSILKLEKRRF 499 (656)
T ss_pred cccHHHHHHHHHHHH
Confidence 999999998887764
No 84
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.07 E-value=9.2e-06 Score=75.68 Aligned_cols=391 Identities=10% Similarity=0.032 Sum_probs=214.0
Q ss_pred CCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHH
Q 038748 79 SHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTF 158 (482)
Q Consensus 79 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 158 (482)
++.......|+.........--...|...+......+-++-+..+|++..+-.+ ..-+-.|..++..+++++|.+.+
T Consensus 116 ~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P---~~~eeyie~L~~~d~~~eaa~~l 192 (835)
T KOG2047|consen 116 GLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAP---EAREEYIEYLAKSDRLDEAAQRL 192 (835)
T ss_pred chHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCH---HHHHHHHHHHHhccchHHHHHHH
Confidence 333444444444443223333334455555555555555566666665555432 22444455566666666666666
Q ss_pred HHHHhc------CCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCC--CCC--HHHHHHHHHHHHhcCCHHHHHHHHH
Q 038748 159 DVMEQY------GCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRI--KPD--NDTYAILLEGWEKERDVANAKKTFG 228 (482)
Q Consensus 159 ~~~~~~------~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~--~~~~~~l~~~~~~~~~~~~a~~~~~ 228 (482)
...... ..+.+-..|.-+-+..++.-+.-....+=.-|+.|+ -+| ...|++|.+-|.+.|.+++|.++|+
T Consensus 193 a~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvye 272 (835)
T KOG2047|consen 193 ATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYE 272 (835)
T ss_pred HHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 555421 112233445544444444433222222212222221 223 2468888888888999999998888
Q ss_pred HhHHhcCCCCCChhhHHHHHHHHHccC---------------------CChHHHHHHHHHHHHcCC-----------CCC
Q 038748 229 EMVIEVGWDPDNVPAYDSYLITLLKGC---------------------DGIYETVNSLKRMMERGC-----------NPG 276 (482)
Q Consensus 229 ~~~~~~~~~p~~~~~~~~l~~~~~~~~---------------------~~~~~a~~~~~~m~~~~~-----------~~~ 276 (482)
+..... . .+.-|..+...|..-. -+++-.+..|+.+...+. +-+
T Consensus 273 eai~~v---~-tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~n 348 (835)
T KOG2047|consen 273 EAIQTV---M-TVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHN 348 (835)
T ss_pred HHHHhh---e-ehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCcc
Confidence 877531 1 2333444444444320 011112222222222110 001
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---
Q 038748 277 MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD------THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPD--- 347 (482)
Q Consensus 277 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--- 347 (482)
...|..- .-...|+..+-..++.+.++ .+.|. ...|..+.+.|-..|+.+.|..+|++..+...+--
T Consensus 349 V~eW~kR--V~l~e~~~~~~i~tyteAv~--~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dL 424 (835)
T KOG2047|consen 349 VEEWHKR--VKLYEGNAAEQINTYTEAVK--TVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDL 424 (835)
T ss_pred HHHHHhh--hhhhcCChHHHHHHHHHHHH--ccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHH
Confidence 1111111 11123556666666776652 22332 34688888999999999999999999887543311
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcc-----------------ChhhHHHHHHHHhcCCChHHHHHHHHHHH
Q 038748 348 IQTYNILFEFLVKGRKLWEASGLFNEMVKNENVL-----------------NHENCRAAVRVYMDSDDPYVAIKFWKYMI 410 (482)
Q Consensus 348 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-----------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 410 (482)
..+|..-...-.+..+++.|+.+++......-.| +...|..+++.--..|-++....+|+.++
T Consensus 425 a~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdrii 504 (835)
T KOG2047|consen 425 AEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRII 504 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 2345555555566788899999888776432111 22345556666667789999999999999
Q ss_pred HcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHH-h--ccHHHHHHHHHHHhh
Q 038748 411 ENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTP-FALSKLKQILIK-A--RKEAVYEELLKKCKA 481 (482)
Q Consensus 411 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~l~~~~~~-~--g~~~~a~~~~~~m~~ 481 (482)
+..+....... .....+-.+.-++++.+++++-+..=..|+. ..|+..+.-+.+ - -+.+.|..+|++..+
T Consensus 505 dLriaTPqii~-NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~ 578 (835)
T KOG2047|consen 505 DLRIATPQIII-NYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD 578 (835)
T ss_pred HHhcCCHHHHH-HHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Confidence 87663222222 2222344566789999999886655444554 466666665543 2 256999999998754
No 85
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.06 E-value=3.7e-07 Score=74.02 Aligned_cols=196 Identities=10% Similarity=-0.014 Sum_probs=102.4
Q ss_pred HHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHH
Q 038748 173 LNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252 (482)
Q Consensus 173 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~ 252 (482)
...|.-.|...|+...|.+-+++..+..+.+..+|..+...|.+.|+.+.|.+.|+... .+.|++..+.|..-..+|
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl---sl~p~~GdVLNNYG~FLC 114 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKAL---SLAPNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHH---hcCCCccchhhhhhHHHH
Confidence 44445555666666666666666544445555566666666666666666666666554 345555555666555556
Q ss_pred ccCCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHH
Q 038748 253 KGCDGIYETVNSLKRMMERG-CNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGA 331 (482)
Q Consensus 253 ~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 331 (482)
.. |++++|.+.|++....- ..--..+|..+.-+..+.|+.+.|...|++.++.. +-...+.-.+.....+.|++-.
T Consensus 115 ~q-g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d--p~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 115 AQ-GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD--PQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred hC-CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC--cCCChHHHHHHHHHHhcccchH
Confidence 65 56666666665555431 11123344455555555555555555555554111 1122334444455555555555
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038748 332 AMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375 (482)
Q Consensus 332 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 375 (482)
|...++.....|. ++.......|+.--..|+.+.+-++=..+.
T Consensus 192 Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~ 234 (250)
T COG3063 192 ARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQ 234 (250)
T ss_pred HHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 5555555544443 455555555555555555555444444443
No 86
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.03 E-value=6.9e-06 Score=78.12 Aligned_cols=364 Identities=12% Similarity=0.006 Sum_probs=238.4
Q ss_pred hhcCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHhh-CChh
Q 038748 76 FSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKEN--VLSLATFASVFSSYVVA-DRVK 152 (482)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~li~~~~~~-~~~~ 152 (482)
.+.|++..+.+.|+.... ..-...+.|+.+-..+...|.-..|+.+++...... +++...+-..-..|.+. +.++
T Consensus 334 ~~~g~f~~lae~fE~~~~--~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~e 411 (799)
T KOG4162|consen 334 SRCGQFEVLAEQFEQALP--FSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVE 411 (799)
T ss_pred HHHHHHHHHHHHHHHHhH--hhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhh
Confidence 457899999999997766 666678899999999999999999999999877766 44555555555555544 7777
Q ss_pred hHHHHHHHHHhc--CC--CCCHhhHHHHHHHHHhc-----------CChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 038748 153 DAITTFDVMEQY--GC--KHDVFALNSLLSAICRD-----------GKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKE 217 (482)
Q Consensus 153 ~a~~~~~~~~~~--~~--~~~~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 217 (482)
+++..-.+.... +. ......|..+.-+|... ....++.+.+++..+..+.|....-.+.--|+..
T Consensus 412 egldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lalq~A~~ 491 (799)
T KOG4162|consen 412 EGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQ 491 (799)
T ss_pred hHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Confidence 777777766652 11 12233444444444321 1245566677776543344444444455567788
Q ss_pred CCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHc-CCC------------------CCHH
Q 038748 218 RDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMER-GCN------------------PGMT 278 (482)
Q Consensus 218 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~-~~~------------------~~~~ 278 (482)
++++.|.+...+...- + .-++...|..+...+... +++.+|+.+.+..... |.. --..
T Consensus 492 R~l~sAl~~~~eaL~l-~-~~~~~~~whLLALvlSa~-kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~ 568 (799)
T KOG4162|consen 492 RQLTSALDYAREALAL-N-RGDSAKAWHLLALVLSAQ-KRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALD 568 (799)
T ss_pred HhHHHHHHHHHHHHHh-c-CCccHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHH
Confidence 9999999999888742 1 223567787777777777 9999999998876542 210 0011
Q ss_pred HHHHHHHHHHh---------c--------------CChhHHHHHHHHhh-------cccC---------CC--CC-----
Q 038748 279 FFKLAFEECLT---------G--------------QNLRGAEFIWGAMV-------GRIG---------FR--PD----- 312 (482)
Q Consensus 279 ~~~~li~~~~~---------~--------------g~~~~a~~~~~~~~-------~~~~---------~~--~~----- 312 (482)
|...++..+-. . ++..++.+....+. +..+ +. |+
T Consensus 569 t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~ 648 (799)
T KOG4162|consen 569 TCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYL 648 (799)
T ss_pred HHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHH
Confidence 22222222110 0 01111111111100 0011 01 11
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHH
Q 038748 313 -THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVR 391 (482)
Q Consensus 313 -~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 391 (482)
...|......+.+.+..++|...+.+.... .......|......+...|.+++|.+.|......++. ++....++..
T Consensus 649 ~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~-hv~s~~Ala~ 726 (799)
T KOG4162|consen 649 LQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPD-HVPSMTALAE 726 (799)
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCC-CcHHHHHHHH
Confidence 223455566777888888888777777664 2224455666666777889999999999998875433 5567889999
Q ss_pred HHhcCCChHHHHH--HHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 038748 392 VYMDSDDPYVAIK--FWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEK 447 (482)
Q Consensus 392 ~~~~~~~~~~a~~--~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 447 (482)
++.+.|+..-|.+ ++..+.+.+ +.+...|..+...+.+.|+.+.|.+.|....+.
T Consensus 727 ~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 727 LLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 9999999888888 999999866 345689999999999999999999999987654
No 87
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=1.4e-05 Score=70.62 Aligned_cols=266 Identities=13% Similarity=0.033 Sum_probs=108.7
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCH
Q 038748 198 GRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGM 277 (482)
Q Consensus 198 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 277 (482)
..++-|+.....+.+++...|+.++|+..|++.. .++|++..........+... |+++....+...+.... .-+.
T Consensus 226 ~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~---~~dpy~i~~MD~Ya~LL~~e-g~~e~~~~L~~~Lf~~~-~~ta 300 (564)
T KOG1174|consen 226 TTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTL---CANPDNVEAMDLYAVLLGQE-GGCEQDSALMDYLFAKV-KYTA 300 (564)
T ss_pred ccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHh---hCChhhhhhHHHHHHHHHhc-cCHhhHHHHHHHHHhhh-hcch
Confidence 3455555555555555555555555555555553 34454443333333333334 55555555544443321 0111
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 038748 278 TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEF 357 (482)
Q Consensus 278 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 357 (482)
..|..-.......++++.|+.+-+..+ +.. +.+...|-.--..+...++.++|.-.|+...... +-+...|..|+.+
T Consensus 301 ~~wfV~~~~l~~~K~~~rAL~~~eK~I-~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hs 377 (564)
T KOG1174|consen 301 SHWFVHAQLLYDEKKFERALNFVEKCI-DSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHS 377 (564)
T ss_pred hhhhhhhhhhhhhhhHHHHHHHHHHHh-ccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHH
Confidence 112122222333444455554444443 110 1122222222233444455555555554444321 1234455555555
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCccChhhHHHHH-HHHh-cCCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCCh
Q 038748 358 LVKGRKLWEASGLFNEMVKNENVLNHENCRAAV-RVYM-DSDDPYVAIKFWKYMIENHCSDLS-ETGNLLVAGLCDMHML 434 (482)
Q Consensus 358 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li-~~~~-~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~ 434 (482)
|...|.+.+|..+-++..+. +.-+..+.+.+. ..|. ...--++|.++++.-.. +.|+. ...+.+...+...|..
T Consensus 378 YLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~ 454 (564)
T KOG1174|consen 378 YLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTPAVNLIAELCQVEGPT 454 (564)
T ss_pred HHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHHHHHHHHHHHHhhCcc
Confidence 55555555554444433322 111222222221 1111 11123344444444333 22332 2223333444444555
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccHHHHHHHH
Q 038748 435 PEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELL 476 (482)
Q Consensus 435 ~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 476 (482)
++++.++++.... .||......|.+.+...+.+.+|.+.|
T Consensus 455 ~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y 494 (564)
T KOG1174|consen 455 KDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYY 494 (564)
T ss_pred chHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHH
Confidence 5555555444322 244444444444444444444444443
No 88
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.01 E-value=3.2e-06 Score=88.94 Aligned_cols=335 Identities=9% Similarity=-0.033 Sum_probs=205.0
Q ss_pred HHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCC-------CCC--HHHHHHHHHHH
Q 038748 144 SYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRI-------KPD--NDTYAILLEGW 214 (482)
Q Consensus 144 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-------~~~--~~~~~~l~~~~ 214 (482)
.....|+++.+..+++.+.......+..........+...|+++++..++....... .+. ......+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 344557777777766655322111223333444555667899999998887754311 111 12223334556
Q ss_pred HhcCCHHHHHHHHHHhHHhcCCCCCC----hhhHHHHHHHHHccCCChHHHHHHHHHHHHc----CCC-CCHHHHHHHHH
Q 038748 215 EKERDVANAKKTFGEMVIEVGWDPDN----VPAYDSYLITLLKGCDGIYETVNSLKRMMER----GCN-PGMTFFKLAFE 285 (482)
Q Consensus 215 ~~~~~~~~a~~~~~~~~~~~~~~p~~----~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~----~~~-~~~~~~~~li~ 285 (482)
...|++++|...+++.... ....+ ..+.+.+...+... |++++|...+++.... |.. ....++..+..
T Consensus 463 ~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~lg~~~~~~-G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~ 539 (903)
T PRK04841 463 INDGDPEEAERLAELALAE--LPLTWYYSRIVATSVLGEVHHCK-GELARALAMMQQTEQMARQHDVYHYALWSLLQQSE 539 (903)
T ss_pred HhCCCHHHHHHHHHHHHhc--CCCccHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHH
Confidence 6899999999999987642 11111 12344455556667 9999999999887643 111 11234455667
Q ss_pred HHHhcCChhHHHHHHHHhhcc---cCCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCC--CHhhHHHHH
Q 038748 286 ECLTGQNLRGAEFIWGAMVGR---IGFR--P-DTHMYNMMISLYCYSNETGAAMKLLDEMVYNG--AFP--DIQTYNILF 355 (482)
Q Consensus 286 ~~~~~g~~~~a~~~~~~~~~~---~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g--~~p--~~~~~~~ll 355 (482)
.+...|+++.|...+.+.... .+.. + ....+..+...+...|++++|...+.+..... ..+ ....+..+.
T Consensus 540 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 619 (903)
T PRK04841 540 ILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLA 619 (903)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHH
Confidence 788899999999988876421 2211 1 23344555666777899999999988775531 112 123344455
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCcc-ChhhH-----HHHHHHHhcCCChHHHHHHHHHHHHcCCCCCh---hhHHHHHH
Q 038748 356 EFLVKGRKLWEASGLFNEMVKNENVL-NHENC-----RAAVRVYMDSDDPYVAIKFWKYMIENHCSDLS---ETGNLLVA 426 (482)
Q Consensus 356 ~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~-----~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~---~~~~~li~ 426 (482)
..+...|+.++|...+.......... ....+ ...+..+...|+.+.|.+.+............ ..+..+..
T Consensus 620 ~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~ 699 (903)
T PRK04841 620 KISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIAR 699 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHH
Confidence 66778999999999988875421110 11111 11224455688999999987775432111111 11345667
Q ss_pred HHHhcCChhHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHHhccHHHHHHHHHHHhh
Q 038748 427 GLCDMHMLPEAVKYAKGMAEK----GIQVT-PFALSKLKQILIKARKEAVYEELLKKCKA 481 (482)
Q Consensus 427 ~~~~~g~~~~A~~~~~~m~~~----~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 481 (482)
++...|++++|...+++.... |...+ ..+...+..++.+.|+.++|.+.+.+..+
T Consensus 700 ~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 700 AQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 788899999999999987543 33222 24566677789999999999998887653
No 89
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.01 E-value=2.6e-08 Score=87.70 Aligned_cols=249 Identities=12% Similarity=0.095 Sum_probs=116.6
Q ss_pred HHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 038748 144 SYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANA 223 (482)
Q Consensus 144 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 223 (482)
-+.-.|++..++.-.+ ........+......+.+++...|+.+.+ ..++..+..|.......+...+...++-+.+
T Consensus 10 n~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~v---l~ei~~~~~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSV---LSEIKKSSSPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHH---HHHS-TTSSCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHH---HHHhccCCChhHHHHHHHHHHHhCccchHHH
Confidence 3444566666665444 22222122333444555666666665543 3444444455555555554444433344444
Q ss_pred HHHHHHhHHhcCCCCCChhhHHHHH-HHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 038748 224 KKTFGEMVIEVGWDPDNVPAYDSYL-ITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGA 302 (482)
Q Consensus 224 ~~~~~~~~~~~~~~p~~~~~~~~l~-~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 302 (482)
..-+++.... ...+.+ .++..+. ..+... |++++|++++..- .+.......+..+.+.++++.|.+.++.
T Consensus 86 l~~l~~~~~~-~~~~~~-~~~~~~~A~i~~~~-~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~ 156 (290)
T PF04733_consen 86 LEELKELLAD-QAGESN-EIVQLLAATILFHE-GDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKN 156 (290)
T ss_dssp HHHHHHCCCT-S---CH-HHHHHHHHHHHCCC-CHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHh-cccccc-HHHHHHHHHHHHHc-CCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4433333211 111111 1222222 222233 6666666665431 2344455556666666666666666666
Q ss_pred hhcccCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 038748 303 MVGRIGFRPDTHMYNMMISLYC----YSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNE 378 (482)
Q Consensus 303 ~~~~~~~~~~~~~~~~li~~~~----~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 378 (482)
|. +. ..|.. ...+..++. ..+.+.+|.-+|+++.+. ..++..+.+.+..++...|++++|.+++.+....+
T Consensus 157 ~~-~~--~eD~~-l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~ 231 (290)
T PF04733_consen 157 MQ-QI--DEDSI-LTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD 231 (290)
T ss_dssp HH-CC--SCCHH-HHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-
T ss_pred HH-hc--CCcHH-HHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Confidence 63 32 23322 222333222 223466666666665543 34555666666666666666666666666655443
Q ss_pred CccChhhHHHHHHHHhcCCCh-HHHHHHHHHHHH
Q 038748 379 NVLNHENCRAAVRVYMDSDDP-YVAIKFWKYMIE 411 (482)
Q Consensus 379 ~~~~~~~~~~li~~~~~~~~~-~~a~~~~~~m~~ 411 (482)
.. +..+...++.+....|+. +.+.+.+.++..
T Consensus 232 ~~-~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 232 PN-DPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp CC-HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred cC-CHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 32 344444455555555554 445555555554
No 90
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.95 E-value=5.3e-07 Score=75.76 Aligned_cols=328 Identities=15% Similarity=0.095 Sum_probs=217.4
Q ss_pred HHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHH-HHHHHHH
Q 038748 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYA-ILLEGWE 215 (482)
Q Consensus 137 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~l~~~~~ 215 (482)
-+.+++..+++..++..|++++..-.+... .+....+.|..+|....++..|-..|+++... .|...-|. .-...+.
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~p-~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql-~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERSP-RSRAGLSLLGYCYYRLQEFALAAECYEQLGQL-HPELEQYRLYQAQSLY 89 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ChHHHHHHHHHHHHHH
Confidence 377888888999999999999988877642 26777888999999999999999999998764 34444443 3356677
Q ss_pred hcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHH--HHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 038748 216 KERDVANAKKTFGEMVIEVGWDPDNVPAYDSYL--ITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNL 293 (482)
Q Consensus 216 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~--~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 293 (482)
+.+.+..|+++...|... | +...-..-+ ...... +++..+..++++.-..| +..+.+...-...+.|++
T Consensus 90 ~A~i~ADALrV~~~~~D~----~-~L~~~~lqLqaAIkYse-~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqy 160 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN----P-ALHSRVLQLQAAIKYSE-GDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQY 160 (459)
T ss_pred HhcccHHHHHHHHHhcCC----H-HHHHHHHHHHHHHhccc-ccCcchHHHHHhccCCC---ccchhccchheeeccccH
Confidence 889999999999888631 2 121111112 222344 88888888888765433 333444444455689999
Q ss_pred hHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-------------CCHh-----------
Q 038748 294 RGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAF-------------PDIQ----------- 349 (482)
Q Consensus 294 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-------------p~~~----------- 349 (482)
+.|.+-|+...+-.|..|- ..||.-+. ..+.|+++.|+++..++.+.|++ ||..
T Consensus 161 EaAvqkFqaAlqvsGyqpl-lAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~S 238 (459)
T KOG4340|consen 161 EAAVQKFQAALQVSGYQPL-LAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQS 238 (459)
T ss_pred HHHHHHHHHHHhhcCCCch-hHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHH
Confidence 9999999999867777664 45766554 55678999999999999999986 2211
Q ss_pred ----hHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHH
Q 038748 350 ----TYNILFEFLVKGRKLWEASGLFNEMVKN-ENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLL 424 (482)
Q Consensus 350 ----~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 424 (482)
.+|.-...+.+.|+++.|.+-+-.|--. .-..|++|...+.-.-+ .+++....+-+.-+.+.+..| ..||..+
T Consensus 239 al~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nPfP-~ETFANl 316 (459)
T KOG4340|consen 239 ALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNPFP-PETFANL 316 (459)
T ss_pred HHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCCCC-hHHHHHH
Confidence 1222233356778888888887777533 23446666655443322 345666666666666654433 3788888
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHH-hccHHHHHHHHHHHh
Q 038748 425 VAGLCDMHMLPEAVKYAKGMAEKGI-QVTPFALSKLKQILIK-ARKEAVYEELLKKCK 480 (482)
Q Consensus 425 i~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~m~ 480 (482)
+-.||+..-++-|-.++.+-...-. -.+...|+ |+.++.- .-..+++.+-++++.
T Consensus 317 LllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 317 LLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred HHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHH
Confidence 8899999999999888876322211 12344443 3334332 334566665555543
No 91
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=4.9e-06 Score=75.89 Aligned_cols=380 Identities=12% Similarity=0.031 Sum_probs=199.3
Q ss_pred hhcCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHH
Q 038748 76 FSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAI 155 (482)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 155 (482)
...|+++.|+..|-.... -.++|...|..-..+|+..|++++|++=-.+-.+..+.-...|+....++.-.|++++|+
T Consensus 13 ~s~~d~~~ai~~~t~ai~--l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~ 90 (539)
T KOG0548|consen 13 FSSGDFETAIRLFTEAIM--LSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAI 90 (539)
T ss_pred cccccHHHHHHHHHHHHc--cCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHH
Confidence 457999999999998776 455689999999999999999999998888878877777788999999999999999999
Q ss_pred HHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHH--hhCCCCCCH--------HHHHHHHHHHHhc--------
Q 038748 156 TTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRV--VDGRIKPDN--------DTYAILLEGWEKE-------- 217 (482)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~--~~~~~~~~~--------~~~~~l~~~~~~~-------- 217 (482)
..|.+-.+... -+...++.+..++..... +.+.|.. +-.+...++ ..|..++..+-+.
T Consensus 91 ~ay~~GL~~d~-~n~~L~~gl~~a~~~~~~---~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l 166 (539)
T KOG0548|consen 91 LAYSEGLEKDP-SNKQLKTGLAQAYLEDYA---ADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYL 166 (539)
T ss_pred HHHHHHhhcCC-chHHHHHhHHHhhhHHHH---hhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccc
Confidence 99999887542 355667777777621110 1111111 111111111 2233333322211
Q ss_pred --CCHHHHHHHHHHhHH----hcCCCCCChhhHHHHHHHHHccCCChH----HHHHHHHHHHH-cCCCCCHHHHHHHHHH
Q 038748 218 --RDVANAKKTFGEMVI----EVGWDPDNVPAYDSYLITLLKGCDGIY----ETVNSLKRMME-RGCNPGMTFFKLAFEE 286 (482)
Q Consensus 218 --~~~~~a~~~~~~~~~----~~~~~p~~~~~~~~l~~~~~~~~~~~~----~a~~~~~~m~~-~~~~~~~~~~~~li~~ 286 (482)
..+..+.-.+..... ..+..+. . .. ..+. .......++.+ .....-..-...+.++
T Consensus 167 ~d~r~m~a~~~l~~~~~~~~~~~~~~~~-~-----------~~-~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgna 233 (539)
T KOG0548|consen 167 NDPRLMKADGQLKGVDELLFYASGIEIL-A-----------SM-AEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNA 233 (539)
T ss_pred ccHHHHHHHHHHhcCccccccccccccC-C-----------CC-CCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHH
Confidence 001111111100000 0000000 0 00 0000 00000000000 0000011123344555
Q ss_pred HHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHH-------HHHH
Q 038748 287 CLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILF-------EFLV 359 (482)
Q Consensus 287 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll-------~~~~ 359 (482)
..+..++..+.+-+...+ . +.-+..-++....+|...|.+..+...-++..+.|.. ...-|+.+- .++.
T Consensus 234 aykkk~f~~a~q~y~~a~-e--l~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~ 309 (539)
T KOG0548|consen 234 AYKKKDFETAIQHYAKAL-E--LATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYT 309 (539)
T ss_pred HHHhhhHHHHHHHHHHHH-h--HhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhh
Confidence 555566666666666554 1 1223334444555566666666555555555544432 111222222 2344
Q ss_pred hcCCHHHHHHHHHHHHhCCCccChhhHH-------------------------HHHHHHhcCCChHHHHHHHHHHHHcCC
Q 038748 360 KGRKLWEASGLFNEMVKNENVLNHENCR-------------------------AAVRVYMDSDDPYVAIKFWKYMIENHC 414 (482)
Q Consensus 360 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~-------------------------~li~~~~~~~~~~~a~~~~~~m~~~~~ 414 (482)
+.++++.+..+|.+.......|+...-. .=...+.+.|++..|++.|.++++..
T Consensus 310 k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~- 388 (539)
T KOG0548|consen 310 KREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD- 388 (539)
T ss_pred hHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-
Confidence 4455666666666555443333222110 11234566777777777777777765
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHh
Q 038748 415 SDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKCK 480 (482)
Q Consensus 415 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 480 (482)
+-|...|....-+|.+.|.+..|++-.+..++.+. +...-|..=..++....+|+.|.+.|++-.
T Consensus 389 P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p-~~~kgy~RKg~al~~mk~ydkAleay~eal 453 (539)
T KOG0548|consen 389 PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDP-NFIKAYLRKGAALRAMKEYDKALEAYQEAL 453 (539)
T ss_pred CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777777777777777777777666665531 122333333445555556677776666544
No 92
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.89 E-value=1.2e-07 Score=83.59 Aligned_cols=251 Identities=12% Similarity=0.027 Sum_probs=159.7
Q ss_pred HHHHhcCChHhHHHHHHHhhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCC
Q 038748 178 SAICRDGKTIDAWQFLRVVDG-RIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD 256 (482)
Q Consensus 178 ~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 256 (482)
+-+.-.|++..++.-.+ ... ....+......+.+++...|+++.++ .++.. +-.| .......+.. +....+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~--~~~~-~l~av~~la~-y~~~~~ 80 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKK--SSSP-ELQAVRLLAE-YLSSPS 80 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-T--TSSC-CCHHHHHHHH-HHCTST
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhcc--CCCh-hHHHHHHHHH-HHhCcc
Confidence 44556688888876555 322 22234556667888999999877544 34432 2244 3445544443 333325
Q ss_pred ChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 038748 257 GIYETVNSLKRMMERGCNP-GMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKL 335 (482)
Q Consensus 257 ~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 335 (482)
+-+.++.-+++........ +..........+...|++++|.+++... .+.......+..|.+.++++.|.+.
T Consensus 81 ~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-------~~lE~~al~Vqi~L~~~R~dlA~k~ 153 (290)
T PF04733_consen 81 DKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-------GSLELLALAVQILLKMNRPDLAEKE 153 (290)
T ss_dssp THHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-------TCHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred chHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-------CcccHHHHHHHHHHHcCCHHHHHHH
Confidence 5666666665554443332 2333333335566789999998887543 3566677788899999999999999
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHH
Q 038748 336 LDEMVYNGAFPDIQTYNILFEFLVK----GRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIE 411 (482)
Q Consensus 336 ~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 411 (482)
++.|.+. ..| .+...+..++.. .+.+.+|..+|+++.+. ..++..+.+.+..++...|++++|.+++.+..+
T Consensus 154 l~~~~~~--~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~ 229 (290)
T PF04733_consen 154 LKNMQQI--DED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALE 229 (290)
T ss_dssp HHHHHCC--SCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC
T ss_pred HHHHHhc--CCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 9999875 233 444445555433 34689999999998654 567888899999999999999999999998776
Q ss_pred cCCCCChhhHHHHHHHHHhcCCh-hHHHHHHHHHHHcC
Q 038748 412 NHCSDLSETGNLLVAGLCDMHML-PEAVKYAKGMAEKG 448 (482)
Q Consensus 412 ~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~~ 448 (482)
.+ +-+..+...++.+....|+. +.+.+++.+++...
T Consensus 230 ~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~ 266 (290)
T PF04733_consen 230 KD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSN 266 (290)
T ss_dssp C--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHT
T ss_pred hc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhC
Confidence 54 23446666677777777777 67788888887654
No 93
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.88 E-value=5e-07 Score=82.86 Aligned_cols=223 Identities=13% Similarity=0.095 Sum_probs=127.3
Q ss_pred HHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChH
Q 038748 180 ICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIY 259 (482)
Q Consensus 180 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~ 259 (482)
+.+.|++.+|.-.|+......+-+...|..|.......++-..|+..+.+.. .++|++..+.-.|...|... |.-.
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl---~LdP~NleaLmaLAVSytNe-g~q~ 370 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCL---ELDPTNLEALMALAVSYTNE-GLQN 370 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHH---hcCCccHHHHHHHHHHHhhh-hhHH
Confidence 4566777777777777555556677777777777777777777777777775 56777777777777777777 7777
Q ss_pred HHHHHHHHHHHcCCCC--------CHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHH
Q 038748 260 ETVNSLKRMMERGCNP--------GMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGA 331 (482)
Q Consensus 260 ~a~~~~~~m~~~~~~~--------~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 331 (482)
.|+..++..+....+- +...-.. ..+.....+....++|-++....+..+|..++..|--.|--.|++++
T Consensus 371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 7777777765532110 0000000 01111122233444444444444434455555555555666666666
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHH
Q 038748 332 AMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMI 410 (482)
Q Consensus 332 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 410 (482)
|...|+........ |..+||.|-..++...+.++|...|.+.++..+.--..-| .|.-.|...|.+++|.+.|-..+
T Consensus 449 aiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~Ry-NlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 449 AVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRY-NLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeeh-hhhhhhhhhhhHHHHHHHHHHHH
Confidence 66666666653211 4455666666666666666666666666653222111222 34445566666666666555443
No 94
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.88 E-value=4.8e-05 Score=70.42 Aligned_cols=192 Identities=13% Similarity=0.099 Sum_probs=129.7
Q ss_pred hHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHH--HHHHH
Q 038748 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNS--LLSAI 180 (482)
Q Consensus 103 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--ll~~~ 180 (482)
..-+=+..+...|++++|.+....+...++.+...+..-+-+.++.+.|++|+.+.+.-.. ..+++. +=.+|
T Consensus 14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~------~~~~~~~~fEKAY 87 (652)
T KOG2376|consen 14 ALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGA------LLVINSFFFEKAY 87 (652)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch------hhhcchhhHHHHH
Confidence 3334467778899999999999999999887888899999999999999999966544321 112222 23445
Q ss_pred H--hcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCC------------------
Q 038748 181 C--RDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDN------------------ 240 (482)
Q Consensus 181 ~--~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~------------------ 240 (482)
| +.+..|+|+..++... +.+..+...-...+.+.|++++|+++|+.+.+. +..-.+
T Consensus 88 c~Yrlnk~Dealk~~~~~~---~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn-~~dd~d~~~r~nl~a~~a~l~~~~ 163 (652)
T KOG2376|consen 88 CEYRLNKLDEALKTLKGLD---RLDDKLLELRAQVLYRLERYDEALDIYQHLAKN-NSDDQDEERRANLLAVAAALQVQL 163 (652)
T ss_pred HHHHcccHHHHHHHHhccc---ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-CCchHHHHHHHHHHHHHHhhhHHH
Confidence 4 7799999998888333 334557777788899999999999999999753 331100
Q ss_pred --------hhhHHH---HHHHHHccCCChHHHHHHHHHHHHcC-------CCCCH-------HHHHHHHHHHHhcCChhH
Q 038748 241 --------VPAYDS---YLITLLKGCDGIYETVNSLKRMMERG-------CNPGM-------TFFKLAFEECLTGQNLRG 295 (482)
Q Consensus 241 --------~~~~~~---l~~~~~~~~~~~~~a~~~~~~m~~~~-------~~~~~-------~~~~~li~~~~~~g~~~~ 295 (482)
..+|.. ....++.. |++.+|+++++...+.+ -.-+. ..-..+.-.+...|+.++
T Consensus 164 ~q~v~~v~e~syel~yN~Ac~~i~~-gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~e 242 (652)
T KOG2376|consen 164 LQSVPEVPEDSYELLYNTACILIEN-GKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAE 242 (652)
T ss_pred HHhccCCCcchHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHH
Confidence 012222 23344455 88888888888773321 11111 112334455667888888
Q ss_pred HHHHHHHhhc
Q 038748 296 AEFIWGAMVG 305 (482)
Q Consensus 296 a~~~~~~~~~ 305 (482)
|..++...++
T Consensus 243 a~~iy~~~i~ 252 (652)
T KOG2376|consen 243 ASSIYVDIIK 252 (652)
T ss_pred HHHHHHHHHH
Confidence 8888888863
No 95
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.87 E-value=2.4e-06 Score=86.10 Aligned_cols=210 Identities=11% Similarity=0.086 Sum_probs=130.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC--ChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCH
Q 038748 200 IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPD--NVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGM 277 (482)
Q Consensus 200 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 277 (482)
.+.+...|-..|......+++++|.+++++.+..-++.-. -...|.++++.-..- |.-+...++|+++.+.. -.-
T Consensus 1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~y-G~eesl~kVFeRAcqyc--d~~ 1530 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAY-GTEESLKKVFERACQYC--DAY 1530 (1710)
T ss_pred CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhh-CcHHHHHHHHHHHHHhc--chH
Confidence 3445566777777777777777777777777642211110 112455555544444 66666777777776642 123
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HhhHHHH
Q 038748 278 TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPD---IQTYNIL 354 (482)
Q Consensus 278 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~l 354 (482)
..|..|...|.+.+.+++|.++++.|.++.+ -...+|...+..+.+.++-++|..++.+..+. -|. .......
T Consensus 1531 ~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~Iskf 1606 (1710)
T KOG1070|consen 1531 TVHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKF 1606 (1710)
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHH
Confidence 4566677777777777777777777776555 44556777777777777777777777766664 222 2233334
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCC
Q 038748 355 FEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDL 417 (482)
Q Consensus 355 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 417 (482)
+..-.+.|+.+++..+|+..+...++ -...|+.+|+.-.++|+.+.+..+|++....++.|-
T Consensus 1607 AqLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~k 1668 (1710)
T KOG1070|consen 1607 AQLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIK 1668 (1710)
T ss_pred HHHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChh
Confidence 44455667777777777777665443 345677777777777777777777777776666543
No 96
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.86 E-value=3.7e-05 Score=66.32 Aligned_cols=299 Identities=14% Similarity=0.084 Sum_probs=187.0
Q ss_pred CHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHH---HHHHHhcCChHhHHHHHHHhhCCCCCCHHHH-HH
Q 038748 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSL---LSAICRDGKTIDAWQFLRVVDGRIKPDNDTY-AI 209 (482)
Q Consensus 134 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l---l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~ 209 (482)
+..-..-+...+...|++..|+.-|...++. |+..|.++ ...|...|+...|+.=+..+.+ .+||-..- ..
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle-lKpDF~~ARiQ 111 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE-LKPDFMAARIQ 111 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHh-cCccHHHHHHH
Confidence 4444556777888889999999999988873 44445444 3567788888888877776543 45664332 22
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHhcCCCCCC---hhhH------------HHHHHHHHccCCChHHHHHHHHHHHHcCCC
Q 038748 210 LLEGWEKERDVANAKKTFGEMVIEVGWDPDN---VPAY------------DSYLITLLKGCDGIYETVNSLKRMMERGCN 274 (482)
Q Consensus 210 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~---~~~~------------~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~ 274 (482)
-...+.+.|.++.|..=|+.++.. .|.+ ..++ ...+..+... |+...|++....+++.. +
T Consensus 112 Rg~vllK~Gele~A~~DF~~vl~~---~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~-GD~~~ai~~i~~llEi~-~ 186 (504)
T KOG0624|consen 112 RGVVLLKQGELEQAEADFDQVLQH---EPSNGLVLEAQSKLALIQEHWVLVQQLKSASGS-GDCQNAIEMITHLLEIQ-P 186 (504)
T ss_pred hchhhhhcccHHHHHHHHHHHHhc---CCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHhcC-c
Confidence 345678899999999999998854 4421 1111 1223344444 77777777777777643 2
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhH---
Q 038748 275 PGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTY--- 351 (482)
Q Consensus 275 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~--- 351 (482)
-|...+..-..+|...|.+..|..-++... +.. .-+..++.-+-..+...|+.+.++..+++..+. .||...+
T Consensus 187 Wda~l~~~Rakc~i~~~e~k~AI~Dlk~as-kLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~ 262 (504)
T KOG0624|consen 187 WDASLRQARAKCYIAEGEPKKAIHDLKQAS-KLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPF 262 (504)
T ss_pred chhHHHHHHHHHHHhcCcHHHHHHHHHHHH-hcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHH
Confidence 356666666777777788777777666663 222 223445555566677777777777777777663 4554321
Q ss_pred -HH---HH------HHHHhcCCHHHHHHHHHHHHhCCCccChhh---HHHHHHHHhcCCChHHHHHHHHHHHHcCCCCC-
Q 038748 352 -NI---LF------EFLVKGRKLWEASGLFNEMVKNENVLNHEN---CRAAVRVYMDSDDPYVAIKFWKYMIENHCSDL- 417 (482)
Q Consensus 352 -~~---ll------~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~- 417 (482)
.. +. ......++|.++.+-.+...+......... +..+-.++...|++.+|+....+..+ +.||
T Consensus 263 YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~--~d~~d 340 (504)
T KOG0624|consen 263 YKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD--IDPDD 340 (504)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh--cCchH
Confidence 11 11 123345666666666666666543322233 33445566667777777777777766 3344
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 038748 418 SETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448 (482)
Q Consensus 418 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 448 (482)
..++.--..+|.-...+++|+.-|+...+.+
T Consensus 341 v~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 341 VQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 5666666677777777777777777776654
No 97
>PF12854 PPR_1: PPR repeat
Probab=98.85 E-value=3.4e-09 Score=59.36 Aligned_cols=32 Identities=28% Similarity=0.370 Sum_probs=21.6
Q ss_pred CCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 038748 413 HCSDLSETGNLLVAGLCDMHMLPEAVKYAKGM 444 (482)
Q Consensus 413 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 444 (482)
|+.||..||++||.+||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56666666666666666666666666666665
No 98
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.83 E-value=9.2e-05 Score=67.89 Aligned_cols=151 Identities=12% Similarity=0.049 Sum_probs=119.9
Q ss_pred hhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHhhHHHHHHHHHhcCCHHHHHHHH
Q 038748 293 LRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFP-DIQTYNILFEFLVKGRKLWEASGLF 371 (482)
Q Consensus 293 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~ 371 (482)
.+....+++++.......|+. +|..+|....+..-+..|..+|.+..+.+..+ ++..++++|..+| .++.+-|..+|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tL-v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTL-VYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCCce-ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHH
Confidence 556667777776455555554 57778888888888999999999999998877 6777888888766 46788999999
Q ss_pred HHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCh--hhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 038748 372 NEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLS--ETGNLLVAGLCDMHMLPEAVKYAKGMAE 446 (482)
Q Consensus 372 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~ 446 (482)
+--.+.- .-+..-....++-+...++-..+..+|+.....++.|+. ..|..++.-=..-|+...+.++-+++..
T Consensus 425 eLGLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 425 ELGLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 9866542 224445567888888999999999999999988776665 7899999988899999999999888754
No 99
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.82 E-value=4.1e-05 Score=80.70 Aligned_cols=336 Identities=10% Similarity=-0.058 Sum_probs=206.3
Q ss_pred hhCCCcHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCC------CCCH--hhHHHHHHHHHh
Q 038748 112 GKNCLFDAMWDAIKSMKKENV-LSLATFASVFSSYVVADRVKDAITTFDVMEQYGC------KHDV--FALNSLLSAICR 182 (482)
Q Consensus 112 ~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~------~~~~--~~~~~ll~~~~~ 182 (482)
...|+++.+...++.+..... .+..........+...|+++++..++......-- .+.. .....+...+..
T Consensus 385 ~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 464 (903)
T PRK04841 385 FNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIN 464 (903)
T ss_pred HhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHh
Confidence 344556655555555432211 1222233445556677999999999987754311 1111 122223345567
Q ss_pred cCChHhHHHHHHHhhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcC-CCCC--ChhhHHHHHHHHHcc
Q 038748 183 DGKTIDAWQFLRVVDGRIK-PD----NDTYAILLEGWEKERDVANAKKTFGEMVIEVG-WDPD--NVPAYDSYLITLLKG 254 (482)
Q Consensus 183 ~g~~~~a~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~p~--~~~~~~~l~~~~~~~ 254 (482)
.|++++|...++......+ .+ ....+.+...+...|++++|...+++...... ..+. ...++..+...+...
T Consensus 465 ~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~ 544 (903)
T PRK04841 465 DGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQ 544 (903)
T ss_pred CCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHC
Confidence 8999999999988543211 12 23456666778889999999999988764211 1110 122344556667777
Q ss_pred CCChHHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHHHhcCChhHHHHHHHHhhcc---cCCCCCHHHHHHHHHHHH
Q 038748 255 CDGIYETVNSLKRMMER----GCN--P-GMTFFKLAFEECLTGQNLRGAEFIWGAMVGR---IGFRPDTHMYNMMISLYC 324 (482)
Q Consensus 255 ~~~~~~a~~~~~~m~~~----~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~~li~~~~ 324 (482)
|++++|...+++.... +.. + ....+..+...+...|++++|...+.+.... .+.......+..+...+.
T Consensus 545 -G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 545 -GFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred -CCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 9999999998876552 221 1 2233445556677789999999998876521 111112334455666788
Q ss_pred hcCCHHHHHHHHHHHHHCCCCC-CHhhH-----HHHHHHHHhcCCHHHHHHHHHHHHhCCCccCh---hhHHHHHHHHhc
Q 038748 325 YSNETGAAMKLLDEMVYNGAFP-DIQTY-----NILFEFLVKGRKLWEASGLFNEMVKNENVLNH---ENCRAAVRVYMD 395 (482)
Q Consensus 325 ~~~~~~~a~~~~~~m~~~g~~p-~~~~~-----~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~ 395 (482)
..|++++|...+.......... ....+ ...+..+...|+.+.|..++............ ..+..+..++..
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 8999999999998875421110 11111 11224445688999999998776542211111 113456777889
Q ss_pred CCChHHHHHHHHHHHHc----CCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 038748 396 SDDPYVAIKFWKYMIEN----HCSDLS-ETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448 (482)
Q Consensus 396 ~~~~~~a~~~~~~m~~~----~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 448 (482)
.|++++|...+++.... |..++. .+...+..++.+.|+.++|...+.+..+..
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 99999999999987743 332222 355666778889999999999999987654
No 100
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.81 E-value=3.9e-05 Score=66.22 Aligned_cols=300 Identities=12% Similarity=0.054 Sum_probs=176.9
Q ss_pred CCHHHHHHHHH-----hhcCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHH
Q 038748 65 VSQETVEQVLK-----FSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFA 139 (482)
Q Consensus 65 ~~~~~~~~ll~-----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 139 (482)
.++..+...+. ...|+..+|+.-|.-... +.+.+=.++-.-...|...|+...|+.=+.+..+..+.-..+--
T Consensus 33 ~~~advekhlElGk~lla~~Q~sDALt~yHaAve--~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARi 110 (504)
T KOG0624|consen 33 ASPADVEKHLELGKELLARGQLSDALTHYHAAVE--GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARI 110 (504)
T ss_pred CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHc--CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHH
Confidence 44455555444 346777788888776655 33333334444456777778888888777777776542222222
Q ss_pred HHHHHHHhhCChhhHHHHHHHHHhcCCCCC--Hhh------------HHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHH
Q 038748 140 SVFSSYVVADRVKDAITTFDVMEQYGCKHD--VFA------------LNSLLSAICRDGKTIDAWQFLRVVDGRIKPDND 205 (482)
Q Consensus 140 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~------------~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 205 (482)
.-...+.+.|.+++|..=|+...+....-+ ... ....+..+...|+...|++....+.+-.+.|..
T Consensus 111 QRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~ 190 (504)
T KOG0624|consen 111 QRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDAS 190 (504)
T ss_pred HhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhH
Confidence 334456778888888888888877542111 111 122334455668888888888887776777888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHH--
Q 038748 206 TYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLA-- 283 (482)
Q Consensus 206 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-- 283 (482)
.|..-..+|...|++..|+.=+... ..+..|++..+..+-..++.. |+.+.++...++-.+. .||...+-..
T Consensus 191 l~~~Rakc~i~~~e~k~AI~Dlk~a---skLs~DnTe~~ykis~L~Y~v-gd~~~sL~~iRECLKl--dpdHK~Cf~~YK 264 (504)
T KOG0624|consen 191 LRQARAKCYIAEGEPKKAIHDLKQA---SKLSQDNTEGHYKISQLLYTV-GDAENSLKEIRECLKL--DPDHKLCFPFYK 264 (504)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHH---HhccccchHHHHHHHHHHHhh-hhHHHHHHHHHHHHcc--CcchhhHHHHHH
Confidence 8888888888888888887665555 355667777777777778888 8888888888777663 4554322111
Q ss_pred -----------HHHHHhcCChhHHHHHHHHhhcccCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 038748 284 -----------FEECLTGQNLRGAEFIWGAMVGRIGFRPD-----THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPD 347 (482)
Q Consensus 284 -----------i~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 347 (482)
+......+++.++.+..+..++. .|. ...+..+-.++...+++.+|++.-.+..+. .||
T Consensus 265 klkKv~K~les~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~--d~~ 339 (504)
T KOG0624|consen 265 KLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI--DPD 339 (504)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc--Cch
Confidence 11122334444444444444311 222 112223334444455566666655555543 233
Q ss_pred -HhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038748 348 -IQTYNILFEFLVKGRKLWEASGLFNEMVKN 377 (482)
Q Consensus 348 -~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 377 (482)
..++.--..+|.-...++.|+.=|+...+.
T Consensus 340 dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 340 DVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 445555555555555566666666655553
No 101
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.80 E-value=1e-06 Score=80.92 Aligned_cols=250 Identities=11% Similarity=0.039 Sum_probs=141.2
Q ss_pred HHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhH
Q 038748 110 LLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDA 189 (482)
Q Consensus 110 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 189 (482)
-+.+.|++.+|.-.|+.....++....+|..|....+..++-..|+..+++..+... -+....-.|.-.|...|.-..|
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP-~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDP-TNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCC-ccHHHHHHHHHHHhhhhhHHHH
Confidence 345667777777777777777777777777777777777777777777777776532 2455566666666777776677
Q ss_pred HHHHHHh-hCC-----C-C--CCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHH
Q 038748 190 WQFLRVV-DGR-----I-K--PDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYE 260 (482)
Q Consensus 190 ~~~~~~~-~~~-----~-~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~ 260 (482)
.+.++.. ... . . ++...-.. ..+.....+....++|-++....+..+ +......|-..|... |.++.
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~-DpdvQ~~LGVLy~ls-~efdr 448 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKI-DPDVQSGLGVLYNLS-GEFDR 448 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCC-ChhHHhhhHHHHhcc-hHHHH
Confidence 6666552 210 0 0 00000000 122222334444555555544433212 233555555555555 77777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038748 261 TVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD-THMYNMMISLYCYSNETGAAMKLLDEM 339 (482)
Q Consensus 261 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m 339 (482)
|...|+..+... +-|...||.+...++...+..+|..-|.+.+ .+.|+ +.+...|.-.|...|.+++|.+.|-..
T Consensus 449 aiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rAL---qLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 449 AVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRAL---QLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHH---hcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 777777766642 2345567777777777777777777777665 33554 334445555666777777776666443
Q ss_pred H---HC------CCCCCHhhHHHHHHHHHhcCCHHHHH
Q 038748 340 V---YN------GAFPDIQTYNILFEFLVKGRKLWEAS 368 (482)
Q Consensus 340 ~---~~------g~~p~~~~~~~ll~~~~~~g~~~~a~ 368 (482)
. +. +..++...|..|=.++...++.+.+.
T Consensus 525 L~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~ 562 (579)
T KOG1125|consen 525 LSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQ 562 (579)
T ss_pred HHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHH
Confidence 2 21 12223445555555555555555443
No 102
>PF12854 PPR_1: PPR repeat
Probab=98.78 E-value=9.2e-09 Score=57.58 Aligned_cols=32 Identities=41% Similarity=0.758 Sum_probs=16.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038748 308 GFRPDTHMYNMMISLYCYSNETGAAMKLLDEM 339 (482)
Q Consensus 308 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 339 (482)
|+.||..+||+||.+||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44455555555555555555555555555444
No 103
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.78 E-value=0.0001 Score=70.96 Aligned_cols=355 Identities=14% Similarity=0.145 Sum_probs=196.3
Q ss_pred CCHHHHHHHHH----hhcCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcC--------C
Q 038748 65 VSQETVEQVLK----FSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKEN--------V 132 (482)
Q Consensus 65 ~~~~~~~~ll~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--------~ 132 (482)
-++.+--++|. ...|+-+.|.+-.+.++. ...|..+.+.|.+.++++-|.-.+-.|.... .
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~IkS-------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~ 796 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS-------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQ 796 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHhh-------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHH
Confidence 45556666666 336888888877776654 4789999999999988888877777665421 0
Q ss_pred C-CHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHH
Q 038748 133 L-SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILL 211 (482)
Q Consensus 133 ~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 211 (482)
. +..+=..+.-...+.|.+++|..+|.+.++. ..|=..|-..|.+++|.++-+.=.. +. -..||....
T Consensus 797 q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DR-iH-Lr~Tyy~yA 865 (1416)
T KOG3617|consen 797 QNGEEDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDR-IH-LRNTYYNYA 865 (1416)
T ss_pred hCCcchhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccc-ee-hhhhHHHHH
Confidence 0 1122222333345678888888888887763 2344556677888888877654322 11 123555555
Q ss_pred HHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 038748 212 EGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQ 291 (482)
Q Consensus 212 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 291 (482)
.-+-..+|++.|++.|++... ..++.. . .++ .++....++.+.+. |...|.-....+-..|
T Consensus 866 ~~Lear~Di~~AleyyEK~~~---------hafev~-r-mL~--e~p~~~e~Yv~~~~------d~~L~~WWgqYlES~G 926 (1416)
T KOG3617|consen 866 KYLEARRDIEAALEYYEKAGV---------HAFEVF-R-MLK--EYPKQIEQYVRRKR------DESLYSWWGQYLESVG 926 (1416)
T ss_pred HHHHhhccHHHHHHHHHhcCC---------hHHHHH-H-HHH--hChHHHHHHHHhcc------chHHHHHHHHHHhccc
Confidence 666667888888888876421 111110 0 000 22222333333322 3344555555556677
Q ss_pred ChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 038748 292 NLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLF 371 (482)
Q Consensus 292 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 371 (482)
+++.|+.+|.... + |-++++..|-.|+.++|-++-++- -|......+.+.|...|++.+|..+|
T Consensus 927 emdaAl~~Y~~A~-D---------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~Ff 990 (1416)
T KOG3617|consen 927 EMDAALSFYSSAK-D---------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFF 990 (1416)
T ss_pred chHHHHHHHHHhh-h---------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 7777777777662 2 555666667777777776655432 24455555667777777777777777
Q ss_pred HHHHhCC--Ccc--ChhhHHHHHHHHhc--CCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHH---
Q 038748 372 NEMVKNE--NVL--NHENCRAAVRVYMD--SDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAK--- 442 (482)
Q Consensus 372 ~~~~~~~--~~~--~~~~~~~li~~~~~--~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~--- 442 (482)
.+...-. +.. ....-..|...+.. ..+.-.|-++|++. |. -+..-+..|-++|.+.+|+++.=
T Consensus 991 TrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~---g~-----~~~~AVmLYHkAGm~~kALelAF~tq 1062 (1416)
T KOG3617|consen 991 TRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEEL---GG-----YAHKAVMLYHKAGMIGKALELAFRTQ 1062 (1416)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc---ch-----hhhHHHHHHHhhcchHHHHHHHHhhc
Confidence 6654310 000 00000011111111 12233333444332 21 12233445667777777666421
Q ss_pred -----HHHH--cCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHh
Q 038748 443 -----GMAE--KGIQVTPFALSKLKQILIKARKEAVYEELLKKCK 480 (482)
Q Consensus 443 -----~m~~--~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 480 (482)
+++. .....|+...+.....+....++++|.+++-..+
T Consensus 1063 Qf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar 1107 (1416)
T KOG3617|consen 1063 QFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAR 1107 (1416)
T ss_pred ccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 1222 2333466777777777777777777777765543
No 104
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.77 E-value=1.9e-06 Score=74.76 Aligned_cols=187 Identities=9% Similarity=-0.070 Sum_probs=119.0
Q ss_pred CCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCH--h
Q 038748 97 DKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSL---ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDV--F 171 (482)
Q Consensus 97 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~ 171 (482)
.......+..+...+...|+++.|...|+++....+.+. .++..+..++...|++++|...++.+.+....... .
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 345667788888888899999999999999888766433 56777888899999999999999999875422111 1
Q ss_pred hHHHHHHHHHhc--------CChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhh
Q 038748 172 ALNSLLSAICRD--------GKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPA 243 (482)
Q Consensus 172 ~~~~ll~~~~~~--------g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~ 243 (482)
++..+..++... |+.+.|.+.|+.+....+.+...+..+..... . ..... ..
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~----~------~~~~~----------~~ 168 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDY----L------RNRLA----------GK 168 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHH----H------HHHHH----------HH
Confidence 344444445443 66777888887765443333333322211100 0 00000 01
Q ss_pred HHHHHHHHHccCCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 038748 244 YDSYLITLLKGCDGIYETVNSLKRMMERGC--NPGMTFFKLAFEECLTGQNLRGAEFIWGAMV 304 (482)
Q Consensus 244 ~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 304 (482)
...+...+... |++.+|+..++...+... +.....+..+..++.+.|++++|..+++.+.
T Consensus 169 ~~~~a~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~ 230 (235)
T TIGR03302 169 ELYVARFYLKR-GAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLG 230 (235)
T ss_pred HHHHHHHHHHc-CChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 12344556666 888888888887776521 2234567777788888888888888777774
No 105
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.77 E-value=0.0002 Score=70.57 Aligned_cols=319 Identities=9% Similarity=0.069 Sum_probs=183.9
Q ss_pred CCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhH
Q 038748 97 DKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENV---LSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFAL 173 (482)
Q Consensus 97 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 173 (482)
-..|++.-+.-+.++...+-+.+.+++++.+.-.+. .+...-|.|+-...+ -+.....+..+++..... |+
T Consensus 980 E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyDa-~~---- 1053 (1666)
T KOG0985|consen 980 ETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYDA-PD---- 1053 (1666)
T ss_pred ccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCCc-hh----
Confidence 345677777788888888888888888888876653 233444555544444 344556666666654321 22
Q ss_pred HHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHc
Q 038748 174 NSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLK 253 (482)
Q Consensus 174 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~ 253 (482)
+...+...+-+++|..+|+... .+....+.|+. .-+.++.|.++-++.. ....|..+..+-++
T Consensus 1054 --ia~iai~~~LyEEAF~ifkkf~----~n~~A~~VLie---~i~~ldRA~efAe~~n--------~p~vWsqlakAQL~ 1116 (1666)
T KOG0985|consen 1054 --IAEIAIENQLYEEAFAIFKKFD----MNVSAIQVLIE---NIGSLDRAYEFAERCN--------EPAVWSQLAKAQLQ 1116 (1666)
T ss_pred --HHHHHhhhhHHHHHHHHHHHhc----ccHHHHHHHHH---HhhhHHHHHHHHHhhC--------ChHHHHHHHHHHHh
Confidence 3344566677788888887654 23444444443 2356666666555442 23467777777777
Q ss_pred cCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 038748 254 GCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAM 333 (482)
Q Consensus 254 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 333 (482)
. +.+.+|++.|-+. -|+..|..+++.+.+.|.+++..+.+.... +..-+|.+. +.||-+|++.++..+.+
T Consensus 1117 ~-~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaR-kk~~E~~id--~eLi~AyAkt~rl~elE 1186 (1666)
T KOG0985|consen 1117 G-GLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMAR-KKVREPYID--SELIFAYAKTNRLTELE 1186 (1666)
T ss_pred c-CchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHH-HhhcCccch--HHHHHHHHHhchHHHHH
Confidence 7 7777777766332 255667777888888888887777776653 444444443 56777777777766654
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHH------
Q 038748 334 KLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWK------ 407 (482)
Q Consensus 334 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~------ 407 (482)
+++ .-|+......+-.-|...|.++.|.-+|... ..|..|...+...|+++.|...-+
T Consensus 1187 ~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRKAns~k 1250 (1666)
T KOG0985|consen 1187 EFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAARKANSTK 1250 (1666)
T ss_pred HHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhhccchh
Confidence 433 1355555556666666666666655554432 123333333333444433332211
Q ss_pred ------------------HHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHh
Q 038748 408 ------------------YMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQ-VTPFALSKLKQILIKA 466 (482)
Q Consensus 408 ------------------~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~l~~~~~~~ 466 (482)
+|...++.....-..-++.-|-..|-+++.+.+++... |++ .....|+-|.-.|.+-
T Consensus 1251 tWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L--GLERAHMgmfTELaiLYsky 1326 (1666)
T KOG0985|consen 1251 TWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL--GLERAHMGMFTELAILYSKY 1326 (1666)
T ss_pred HHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh--chhHHHHHHHHHHHHHHHhc
Confidence 11111222222344566777777777777777776654 322 2234555555555444
No 106
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.76 E-value=0.00019 Score=70.72 Aligned_cols=331 Identities=11% Similarity=0.072 Sum_probs=182.4
Q ss_pred CCHHHHHHHHH--hhcCCchhHhHHhhhhhcCC-CCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHH
Q 038748 65 VSQETVEQVLK--FSYSHPGPAVKFFRWSAYQL-NDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASV 141 (482)
Q Consensus 65 ~~~~~~~~ll~--~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 141 (482)
-+|..+....+ ...+-+.+-+++++.+.-+. .+.-+...-|.+|-...+. +..+..+.++++..-+.|+ +
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyDa~~------i 1054 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYDAPD------I 1054 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCCchh------H
Confidence 44555555555 34566777788887655442 3444455556666555554 3445556666655554443 2
Q ss_pred HHHHHhhCChhhHHHHHHHHHhcC---------------------CCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCC
Q 038748 142 FSSYVVADRVKDAITTFDVMEQYG---------------------CKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRI 200 (482)
Q Consensus 142 i~~~~~~~~~~~a~~~~~~~~~~~---------------------~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 200 (482)
...+...+-+++|..+|+...-.+ -.-.+..|..+..+-.+.|...+|.+-|-+.
T Consensus 1055 a~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika---- 1130 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA---- 1130 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc----
Confidence 334445555666666665432100 0012234455555555555555554433322
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHH
Q 038748 201 KPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFF 280 (482)
Q Consensus 201 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 280 (482)
.|+..|..+++...+.|.|++-.+.+....++ .-.|. .-..++.+|.+. ++..+..+++ .-|+....
T Consensus 1131 -dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~---id~eLi~AyAkt-~rl~elE~fi-------~gpN~A~i 1197 (1666)
T KOG0985|consen 1131 -DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPY---IDSELIFAYAKT-NRLTELEEFI-------AGPNVANI 1197 (1666)
T ss_pred -CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCcc---chHHHHHHHHHh-chHHHHHHHh-------cCCCchhH
Confidence 24455566666666666666655555444432 33332 334455555555 5555544443 23555555
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 038748 281 KLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVK 360 (482)
Q Consensus 281 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 360 (482)
..+.+-|...|.++.|.-+|..+ .-|..|...+...|+++.|...-++. -+..||..+-.+|..
T Consensus 1198 ~~vGdrcf~~~~y~aAkl~y~~v----------SN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd 1261 (1666)
T KOG0985|consen 1198 QQVGDRCFEEKMYEAAKLLYSNV----------SNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVD 1261 (1666)
T ss_pred HHHhHHHhhhhhhHHHHHHHHHh----------hhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhc
Confidence 55556666666666655555443 24666777777777777776554433 356788888888877
Q ss_pred cCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHH
Q 038748 361 GRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKY 440 (482)
Q Consensus 361 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 440 (482)
.+.+.-| .|-..++.....-...++..|-..|-+++.+.+++...... .-....|+-|.-.|.+ =++++..+-
T Consensus 1262 ~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLE-RAHMgmfTELaiLYsk-ykp~km~EH 1334 (1666)
T KOG0985|consen 1262 KEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLE-RAHMGMFTELAILYSK-YKPEKMMEH 1334 (1666)
T ss_pred hhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchh-HHHHHHHHHHHHHHHh-cCHHHHHHH
Confidence 7666443 34344455566667789999999999999988887654211 1122456666666655 234444443
Q ss_pred HH
Q 038748 441 AK 442 (482)
Q Consensus 441 ~~ 442 (482)
++
T Consensus 1335 l~ 1336 (1666)
T KOG0985|consen 1335 LK 1336 (1666)
T ss_pred HH
Confidence 33
No 107
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.76 E-value=9.3e-06 Score=82.08 Aligned_cols=233 Identities=10% Similarity=0.054 Sum_probs=184.1
Q ss_pred CCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCC
Q 038748 237 DPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNP-----GMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRP 311 (482)
Q Consensus 237 ~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~-----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 311 (482)
.|++...|-..|...+.. ++.++|.++.++.... +.+ -...|.++++.-..-|.-+...++|+++. +. .-
T Consensus 1454 sPNSSi~WI~YMaf~Lel-sEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAc-qy--cd 1528 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLEL-SEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERAC-QY--CD 1528 (1710)
T ss_pred CCCcchHHHHHHHHHhhh-hhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHH-Hh--cc
Confidence 677788898999999999 9999999999998764 211 13457777777777888889999999985 32 22
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCc-cChhhHHHHH
Q 038748 312 DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENV-LNHENCRAAV 390 (482)
Q Consensus 312 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li 390 (482)
.-.+|..|...|.+.+.+++|-++++.|.++ ..-....|...+..+.+..+-+.|..++++.++.-.+ -......-.+
T Consensus 1529 ~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfA 1607 (1710)
T KOG1070|consen 1529 AYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFA 1607 (1710)
T ss_pred hHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHH
Confidence 3457899999999999999999999999986 3346678999999999999999999999999875322 1233455566
Q ss_pred HHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHHhcc
Q 038748 391 RVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTP--FALSKLKQILIKARK 468 (482)
Q Consensus 391 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~~l~~~~~~~g~ 468 (482)
..-.+.|+.+.+..+|+...... +--...|+.+|..-.++|+.+.+..+|++....++.|-. ..|...+..=.+.|+
T Consensus 1608 qLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gd 1686 (1710)
T KOG1070|consen 1608 QLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGD 1686 (1710)
T ss_pred HHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCc
Confidence 77778999999999999988653 223479999999999999999999999999999987765 456667766666677
Q ss_pred HHHHHHHH
Q 038748 469 EAVYEELL 476 (482)
Q Consensus 469 ~~~a~~~~ 476 (482)
-+.++.+=
T Consensus 1687 e~~vE~VK 1694 (1710)
T KOG1070|consen 1687 EKNVEYVK 1694 (1710)
T ss_pred hhhHHHHH
Confidence 65554443
No 108
>PLN02789 farnesyltranstransferase
Probab=98.70 E-value=4.2e-05 Score=68.52 Aligned_cols=210 Identities=7% Similarity=-0.023 Sum_probs=110.8
Q ss_pred HHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhC-ChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCh-
Q 038748 109 DLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVAD-RVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKT- 186 (482)
Q Consensus 109 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~- 186 (482)
..+...+..++|+.+.+.+.+.++.+..+|+.--.++...| ++++++..++.+.+.+.+ +..+|+..-..+.+.|..
T Consensus 45 a~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~ 123 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDA 123 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchh
Confidence 34444556666666666666666655555555555555555 456666666666665432 334455444444444442
Q ss_pred -HhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHcc--CCC----hH
Q 038748 187 -IDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG--CDG----IY 259 (482)
Q Consensus 187 -~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~--~~~----~~ 259 (482)
+++..+++.+.+..+.|..+|+....++...|+++++++.++++.+. .|.+..+|+.....+... .++ .+
T Consensus 124 ~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~---d~~N~sAW~~R~~vl~~~~~l~~~~~~~e 200 (320)
T PLN02789 124 ANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE---DVRNNSAWNQRYFVITRSPLLGGLEAMRD 200 (320)
T ss_pred hHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH---CCCchhHHHHHHHHHHhccccccccccHH
Confidence 45555665555555566666666666666667777777777766633 455555565554443322 011 13
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----CChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHh
Q 038748 260 ETVNSLKRMMERGCNPGMTFFKLAFEECLTG----QNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCY 325 (482)
Q Consensus 260 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 325 (482)
+.++...+++... +-|...|+-+...+... +...+|.+.+.+.. +.+ ..+......|++.|+.
T Consensus 201 ~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~-~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 201 SELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVL-SKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhh-ccc-CCcHHHHHHHHHHHHh
Confidence 4444444444432 23444555555555442 23344555555554 211 2345555666666654
No 109
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.67 E-value=3.7e-05 Score=75.35 Aligned_cols=186 Identities=9% Similarity=-0.068 Sum_probs=133.2
Q ss_pred CCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHH
Q 038748 79 SHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTF 158 (482)
Q Consensus 79 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 158 (482)
.+...|+..|-...+ -...=...|..|...|...-+...|.+.|+...+.+..+........+.|++..+++.|..+.
T Consensus 472 K~~~~al~ali~alr--ld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~ 549 (1238)
T KOG1127|consen 472 KNSALALHALIRALR--LDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEIC 549 (1238)
T ss_pred hhHHHHHHHHHHHHh--cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHH
Confidence 445566666655444 222224678999999998888999999999999988888888999999999999999999984
Q ss_pred HHHHhcCC-CCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCC
Q 038748 159 DVMEQYGC-KHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWD 237 (482)
Q Consensus 159 ~~~~~~~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 237 (482)
-..-+... ..-...|..+--.|.+.++...|..-|+....-.+.|...|..+..+|..+|.+..|.++|.+.. -+.
T Consensus 550 l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs---~Lr 626 (1238)
T KOG1127|consen 550 LRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKAS---LLR 626 (1238)
T ss_pred HHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhH---hcC
Confidence 33322210 01112233333445677888888888887666667788999999999999999999999998874 567
Q ss_pred CCChhhHHHHHHHHHccCCChHHHHHHHHHHHH
Q 038748 238 PDNVPAYDSYLITLLKGCDGIYETVNSLKRMME 270 (482)
Q Consensus 238 p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~ 270 (482)
|++...-.-.....+.. |.+.+++..+.....
T Consensus 627 P~s~y~~fk~A~~ecd~-GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 627 PLSKYGRFKEAVMECDN-GKYKEALDALGLIIY 658 (1238)
T ss_pred cHhHHHHHHHHHHHHHh-hhHHHHHHHHHHHHH
Confidence 76544333333444555 888888888887654
No 110
>PLN02789 farnesyltranstransferase
Probab=98.66 E-value=5.6e-05 Score=67.76 Aligned_cols=209 Identities=8% Similarity=-0.004 Sum_probs=113.8
Q ss_pred HHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 038748 212 EGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD-GIYETVNSLKRMMERGCNPGMTFFKLAFEECLTG 290 (482)
Q Consensus 212 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 290 (482)
..+...+..++|+.+..+++ .+.|++..+|+.--..+... + ++++++..++++.+... -+..+|+.-.-.+.+.
T Consensus 45 a~l~~~e~serAL~lt~~aI---~lnP~~ytaW~~R~~iL~~L-~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l~~l 119 (320)
T PLN02789 45 AVYASDERSPRALDLTADVI---RLNPGNYTVWHFRRLCLEAL-DADLEEELDFAEDVAEDNP-KNYQIWHHRRWLAEKL 119 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHH---HHCchhHHHHHHHHHHHHHc-chhHHHHHHHHHHHHHHCC-cchHHhHHHHHHHHHc
Confidence 33444556666666666665 33565555555554444444 4 45666666666665432 2233344333333334
Q ss_pred CCh--hHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc---CC--
Q 038748 291 QNL--RGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKG---RK-- 363 (482)
Q Consensus 291 g~~--~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~---g~-- 363 (482)
|+. +++..+++.+++.. +-+..+|+....++...|+++++++.++++.+.+.. +...|+.....+.+. |.
T Consensus 120 ~~~~~~~el~~~~kal~~d--pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~ 196 (320)
T PLN02789 120 GPDAANKELEFTRKILSLD--AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLE 196 (320)
T ss_pred CchhhHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhcccccccc
Confidence 432 45566666665221 335666666666666677777777777777776543 445555444444333 22
Q ss_pred --HHHHHHHHHHHHhCCCccChhhHHHHHHHHhcC----CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 038748 364 --LWEASGLFNEMVKNENVLNHENCRAAVRVYMDS----DDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCD 430 (482)
Q Consensus 364 --~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 430 (482)
.++..++..+++...+. |...|+.+...+... +...+|.+.+.+..+.+ ..+......|+..|+.
T Consensus 197 ~~~e~el~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 197 AMRDSELKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred ccHHHHHHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 23556666666665443 556666666666552 33455767766665533 2334556666676664
No 111
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.66 E-value=8.6e-05 Score=70.57 Aligned_cols=217 Identities=15% Similarity=0.093 Sum_probs=169.6
Q ss_pred HHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 038748 136 ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWE 215 (482)
Q Consensus 136 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 215 (482)
..-..+...+...|-...|..+|++.. .|..++.+|+..|+..+|..+..+..+ -+||...|..+.+...
T Consensus 399 q~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 399 QLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLH 468 (777)
T ss_pred hHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhcc
Confidence 344566777888899999999998764 467788999999999999988777544 5889999999999988
Q ss_pred hcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhH
Q 038748 216 KERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRG 295 (482)
Q Consensus 216 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 295 (482)
...-+++|.++++....+ +-..+....... ++++++.+.|+.-.+.. +.-..+|-....+..+.++++.
T Consensus 469 d~s~yEkawElsn~~sar---------A~r~~~~~~~~~-~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 469 DPSLYEKAWELSNYISAR---------AQRSLALLILSN-KDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred ChHHHHHHHHHhhhhhHH---------HHHhhccccccc-hhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHH
Confidence 888899999998876432 222223333445 89999999998766542 2345677777778888999999
Q ss_pred HHHHHHHhhcccCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 038748 296 AEFIWGAMVGRIGFRPD-THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374 (482)
Q Consensus 296 a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 374 (482)
|.+.|...+ ...|| ...||.+-.+|.+.++-.+|...+.+..+.+.. +...|-.-+....+.|.+++|.+.+..+
T Consensus 538 av~aF~rcv---tL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 538 AVKAFHRCV---TLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHHHh---hcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 999999886 33554 678999999999999999999999999988743 4456666667778999999999999888
Q ss_pred HhC
Q 038748 375 VKN 377 (482)
Q Consensus 375 ~~~ 377 (482)
...
T Consensus 614 l~~ 616 (777)
T KOG1128|consen 614 LDL 616 (777)
T ss_pred HHh
Confidence 764
No 112
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.65 E-value=6.7e-06 Score=71.34 Aligned_cols=187 Identities=14% Similarity=0.017 Sum_probs=106.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--hhHH
Q 038748 276 GMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD-THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDI--QTYN 352 (482)
Q Consensus 276 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~ 352 (482)
....+......+...|+++.|...|+++++...-.|. ..++..+..+|...|++++|...++++.+....... ..+.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 3455666666777777777777777777532211111 135566666777777777777777777664221111 1233
Q ss_pred HHHHHHHhc--------CCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHH
Q 038748 353 ILFEFLVKG--------RKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLL 424 (482)
Q Consensus 353 ~ll~~~~~~--------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 424 (482)
.+..++... |+.++|.+.|+.+.+.... +...+..+..... ... ... .....+
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~~------~~~--------~~~~~~ 172 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LRN------RLA--------GKELYV 172 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HHH------HHH--------HHHHHH
Confidence 333344333 5566666666666654322 1111111111000 000 000 011234
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHhh
Q 038748 425 VAGLCDMHMLPEAVKYAKGMAEKGI--QVTPFALSKLKQILIKARKEAVYEELLKKCKA 481 (482)
Q Consensus 425 i~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 481 (482)
...|.+.|++++|...+++..+... +.....+..+..++.+.|++++|..+++.+..
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5667888999999999999876642 12346778888899999999999998888764
No 113
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.64 E-value=5.7e-06 Score=78.19 Aligned_cols=116 Identities=16% Similarity=0.058 Sum_probs=49.5
Q ss_pred cCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHhcCCHHHHH
Q 038748 290 GQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPD-IQTYNILFEFLVKGRKLWEAS 368 (482)
Q Consensus 290 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~ 368 (482)
.++++++.+.|+.-.+.. +.-..+|-.+-.+..+.++++.|.+.|.....- .|| ...||.+-.+|.+.|+..+|.
T Consensus 498 ~~~fs~~~~hle~sl~~n--plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~ 573 (777)
T KOG1128|consen 498 NKDFSEADKHLERSLEIN--PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAF 573 (777)
T ss_pred chhHHHHHHHHHHHhhcC--ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHH
Confidence 344444444444433221 112233444444444444444444444444432 222 233444444444444444444
Q ss_pred HHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHH
Q 038748 369 GLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMI 410 (482)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 410 (482)
..+++..+.+ .-+...|...+....+.|.+++|.+.+.++.
T Consensus 574 ~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 574 RKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred HHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 4444444444 2233334444444444444444444444443
No 114
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.63 E-value=1.4e-05 Score=66.41 Aligned_cols=165 Identities=12% Similarity=0.049 Sum_probs=121.5
Q ss_pred CCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHH
Q 038748 132 VLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILL 211 (482)
Q Consensus 132 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 211 (482)
+-+... ..+-..+.-.|+-+....+........ .-|....+.+.....+.|++..|...+.+....-++|..+|+.+.
T Consensus 64 p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lg 141 (257)
T COG5010 64 PEDLSI-AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLG 141 (257)
T ss_pred cchHHH-HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHH
Confidence 334444 555666667777777777776654432 235566667888888888888888888888777788888888888
Q ss_pred HHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 038748 212 EGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQ 291 (482)
Q Consensus 212 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 291 (482)
-+|.+.|+++.|..-|.+..+ +.|.+....+.+...+.-. |+.+.|..++......+ .-|...-..+.......|
T Consensus 142 aaldq~Gr~~~Ar~ay~qAl~---L~~~~p~~~nNlgms~~L~-gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g 216 (257)
T COG5010 142 AALDQLGRFDEARRAYRQALE---LAPNEPSIANNLGMSLLLR-GDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQG 216 (257)
T ss_pred HHHHHccChhHHHHHHHHHHH---hccCCchhhhhHHHHHHHc-CCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcC
Confidence 888888888888888888763 4555556777887777777 88888888888877654 235666667777778888
Q ss_pred ChhHHHHHHHHh
Q 038748 292 NLRGAEFIWGAM 303 (482)
Q Consensus 292 ~~~~a~~~~~~~ 303 (482)
+++.|+++...-
T Consensus 217 ~~~~A~~i~~~e 228 (257)
T COG5010 217 DFREAEDIAVQE 228 (257)
T ss_pred ChHHHHhhcccc
Confidence 888888776554
No 115
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.61 E-value=2.3e-05 Score=77.50 Aligned_cols=149 Identities=9% Similarity=-0.008 Sum_probs=128.3
Q ss_pred CCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHH
Q 038748 96 NDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNS 175 (482)
Q Consensus 96 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 175 (482)
.+..++..+-.|.......|.+++|..+++...+..+.+......+...+.+.+++++|+..++....... -+....+.
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p-~~~~~~~~ 159 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGS-SSAREILL 159 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCC-CCHHHHHH
Confidence 56778999999999999999999999999999999988999999999999999999999999999998753 35666788
Q ss_pred HHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHH
Q 038748 176 LLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYL 248 (482)
Q Consensus 176 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~ 248 (482)
+..++.+.|++++|..+|+++....+-+..++..+..++.+.|+.++|...|+..... ..| ....|+..+
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~--~~~-~~~~~~~~~ 229 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA--IGD-GARKLTRRL 229 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--hCc-chHHHHHHH
Confidence 8888999999999999999987655666899999999999999999999999999753 233 334555444
No 116
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.60 E-value=1.1e-05 Score=67.21 Aligned_cols=151 Identities=11% Similarity=-0.034 Sum_probs=118.8
Q ss_pred hcCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHH
Q 038748 77 SYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAIT 156 (482)
Q Consensus 77 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 156 (482)
..|+.+.+..+...... ..+.|....+..+....+.|++..|+..|.+.....+++..+|+.+.-+|.+.|+++.|..
T Consensus 78 ~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ 155 (257)
T COG5010 78 LRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARR 155 (257)
T ss_pred hcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHH
Confidence 35667777766665444 5566677777788888888999999999998888888888889988889999999999988
Q ss_pred HHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 038748 157 TFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEM 230 (482)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 230 (482)
-|.+..+.-. -+...+|.|.-.+.-.|+.+.|..++........-|..+-..+.......|++++|+++...-
T Consensus 156 ay~qAl~L~~-~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e 228 (257)
T COG5010 156 AYRQALELAP-NEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQE 228 (257)
T ss_pred HHHHHHHhcc-CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcccc
Confidence 8888887643 356677888888888888888888888866555667778888888888888888888876543
No 117
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.59 E-value=7.8e-05 Score=62.18 Aligned_cols=119 Identities=17% Similarity=0.099 Sum_probs=54.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 038748 210 LLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLT 289 (482)
Q Consensus 210 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 289 (482)
-...|+..|++++|++...... +......-...+.+. .+++-|.+.+++|.+.. +..|.+.+..++.+
T Consensus 114 aa~i~~~~~~~deAl~~~~~~~--------~lE~~Al~VqI~lk~-~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~ 181 (299)
T KOG3081|consen 114 AAIIYMHDGDFDEALKALHLGE--------NLEAAALNVQILLKM-HRFDLAEKELKKMQQID---EDATLTQLAQAWVK 181 (299)
T ss_pred hhHHhhcCCChHHHHHHHhccc--------hHHHHHHHHHHHHHH-HHHHHHHHHHHHHHccc---hHHHHHHHHHHHHH
Confidence 3444555555555555554321 222222223334444 55555555555555432 33444444444332
Q ss_pred ----cCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 038748 290 ----GQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYN 342 (482)
Q Consensus 290 ----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 342 (482)
.+.+.+|.-+|++|- .+..|+..+.+....++...|++++|..+++....+
T Consensus 182 la~ggek~qdAfyifeE~s--~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 182 LATGGEKIQDAFYIFEELS--EKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK 236 (299)
T ss_pred HhccchhhhhHHHHHHHHh--cccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 233445555555552 123445555555555555555555555555555444
No 118
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.58 E-value=7.1e-05 Score=71.09 Aligned_cols=184 Identities=14% Similarity=0.084 Sum_probs=80.8
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 038748 256 DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKL 335 (482)
Q Consensus 256 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 335 (482)
..+.+|+.+++.+..... -..-|..+..-|...|+++.|+++|.+. + .++--|..|.+.|+|+.|.++
T Consensus 746 kew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~----~------~~~dai~my~k~~kw~da~kl 813 (1636)
T KOG3616|consen 746 KEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA----D------LFKDAIDMYGKAGKWEDAFKL 813 (1636)
T ss_pred hhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc----c------hhHHHHHHHhccccHHHHHHH
Confidence 344444444444443321 1222334444444445555555444432 0 123334445555555554444
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCC
Q 038748 336 LDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCS 415 (482)
Q Consensus 336 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 415 (482)
-.+.. |.......|-.-..-+-..|++.+|.++|-.+. .|+ ..|..|-+.|..+..+++...- .
T Consensus 814 a~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k~-----h 877 (1636)
T KOG3616|consen 814 AEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKH-----H 877 (1636)
T ss_pred HHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHHh-----C
Confidence 33322 122222333333333444444444444443221 122 2344444555555444444332 1
Q ss_pred CCh--hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccHHHHHHHH
Q 038748 416 DLS--ETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELL 476 (482)
Q Consensus 416 p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 476 (482)
|+. .|.-.+..-|-..|+...|..-|-+.. -|.+.++.|...+.|++|-++-
T Consensus 878 ~d~l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 878 GDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIA 931 (1636)
T ss_pred hhhhhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHH
Confidence 221 344445555666677766666554332 2444555666666666665543
No 119
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=0.00016 Score=66.34 Aligned_cols=348 Identities=13% Similarity=0.017 Sum_probs=213.0
Q ss_pred HHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCC-HhhHHHHHHHHHhcCChH
Q 038748 109 DLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHD-VFALNSLLSAICRDGKTI 187 (482)
Q Consensus 109 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~ 187 (482)
.+....|+++.|+.+|.+.....+++...|..-..+|+..|++++|++=-.+-++. .|+ ...|+-...++.-.|+++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccHH
Confidence 45567899999999999999999899999999999999999999999877777764 455 346888888888899999
Q ss_pred hHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH--hHHhcCCCCC-----ChhhHHHHHHHHHccCCChHH
Q 038748 188 DAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGE--MVIEVGWDPD-----NVPAYDSYLITLLKGCDGIYE 260 (482)
Q Consensus 188 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~--~~~~~~~~p~-----~~~~~~~l~~~~~~~~~~~~~ 260 (482)
+|..-|.+-....+.|...++-+..++... .. +.+.|.. |..+..-.|. ....|..++..+-+....+..
T Consensus 88 eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~--~~-~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~ 164 (539)
T KOG0548|consen 88 EAILAYSEGLEKDPSNKQLKTGLAQAYLED--YA-ADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKL 164 (539)
T ss_pred HHHHHHHHHhhcCCchHHHHHhHHHhhhHH--HH-hhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhc
Confidence 999999986555667777888887777211 11 1111110 0000000110 001122222222111100000
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----------CC--------hh----HHHHHHHHhhcccCCCCCHHHHH
Q 038748 261 TVNSLKRMMERGCNPGMTFFKLAFEECLTG-----------QN--------LR----GAEFIWGAMVGRIGFRPDTHMYN 317 (482)
Q Consensus 261 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~-----------g~--------~~----~a~~~~~~~~~~~~~~~~~~~~~ 317 (482)
- +. +. .++.+.... |. +. .......++.+......-..-.-
T Consensus 165 ~-----------l~-d~----r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek 228 (539)
T KOG0548|consen 165 Y-----------LN-DP----RLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEK 228 (539)
T ss_pred c-----------cc-cH----HHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHH
Confidence 0 00 00 111111110 00 00 00000000000000000112245
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHH-------HH
Q 038748 318 MMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRA-------AV 390 (482)
Q Consensus 318 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-------li 390 (482)
.+..+..+..+++.|++-+....+.. -+..-++....+|...|.+.++...-...++.|.. ...-|+. +.
T Consensus 229 ~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g 305 (539)
T KOG0548|consen 229 ELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLG 305 (539)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhh
Confidence 56677777888999999999888864 35555677777888888888887777776666543 2222332 34
Q ss_pred HHHhcCCChHHHHHHHHHHHHcCCCCChhhH-------------------------HHHHHHHHhcCChhHHHHHHHHHH
Q 038748 391 RVYMDSDDPYVAIKFWKYMIENHCSDLSETG-------------------------NLLVAGLCDMHMLPEAVKYAKGMA 445 (482)
Q Consensus 391 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~-------------------------~~li~~~~~~g~~~~A~~~~~~m~ 445 (482)
.+|.+.++++.|.+.|.+.......|+..+= ..-.+.+.+.|++..|++.|.+++
T Consensus 306 ~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAI 385 (539)
T KOG0548|consen 306 NAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAI 385 (539)
T ss_pred hhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 4677778889999988877654444443221 111445678899999999999999
Q ss_pred HcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHhh
Q 038748 446 EKGIQVTPFALSKLKQILIKARKEAVYEELLKKCKA 481 (482)
Q Consensus 446 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 481 (482)
... +-|...|..-.-+|.+.|.+..|+.=.++.++
T Consensus 386 kr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ie 420 (539)
T KOG0548|consen 386 KRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIE 420 (539)
T ss_pred hcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 887 45778899999999999999999886665543
No 120
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.55 E-value=7.4e-05 Score=67.82 Aligned_cols=139 Identities=15% Similarity=0.099 Sum_probs=90.1
Q ss_pred HHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcC
Q 038748 213 GWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPG-MTFFKLAFEECLTGQ 291 (482)
Q Consensus 213 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g 291 (482)
.+...|++++|+..++.+... .|+|...+......+... ++..+|.+.++++... .|+ ......+..++.+.|
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~---~P~N~~~~~~~~~i~~~~-nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g 388 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAA---QPDNPYYLELAGDILLEA-NKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGG 388 (484)
T ss_pred HHHHhcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHc-CChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcC
Confidence 345567777777777777643 676666666666666666 7777777777777764 344 444455667777777
Q ss_pred ChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 038748 292 NLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLF 371 (482)
Q Consensus 292 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 371 (482)
++.+|..+++... ...+-|...|..|..+|...|+..++..-..++.. ..|+++.|...+
T Consensus 389 ~~~eai~~L~~~~--~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~------------------~~G~~~~A~~~l 448 (484)
T COG4783 389 KPQEAIRILNRYL--FNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYA------------------LAGRLEQAIIFL 448 (484)
T ss_pred ChHHHHHHHHHHh--hcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH------------------hCCCHHHHHHHH
Confidence 7777777777764 23355666777777777777777777666555432 345666666666
Q ss_pred HHHHhC
Q 038748 372 NEMVKN 377 (482)
Q Consensus 372 ~~~~~~ 377 (482)
....+.
T Consensus 449 ~~A~~~ 454 (484)
T COG4783 449 MRASQQ 454 (484)
T ss_pred HHHHHh
Confidence 555543
No 121
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.55 E-value=0.00013 Score=60.96 Aligned_cols=156 Identities=13% Similarity=-0.004 Sum_probs=81.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 038748 280 FKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLV 359 (482)
Q Consensus 280 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 359 (482)
...-...|+..|++++|++..+... +......=+..+.+..+.+-|.+.+++|.+- -+..|.+.|..++.
T Consensus 111 ~l~aa~i~~~~~~~deAl~~~~~~~-------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv 180 (299)
T KOG3081|consen 111 LLLAAIIYMHDGDFDEALKALHLGE-------NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWV 180 (299)
T ss_pred HHHhhHHhhcCCChHHHHHHHhccc-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHH
Confidence 3333455666666666666665421 1222222233345556666666666666653 24455555555544
Q ss_pred h----cCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh-
Q 038748 360 K----GRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHML- 434 (482)
Q Consensus 360 ~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~- 434 (482)
+ .+.+..|.-+|++|.+. ..|+..+.+....++...|++++|..++++...+.. -+..+...+|.+-...|..
T Consensus 181 ~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~-~dpetL~Nliv~a~~~Gkd~ 258 (299)
T KOG3081|consen 181 KLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA-KDPETLANLIVLALHLGKDA 258 (299)
T ss_pred HHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHhCCCh
Confidence 3 33566666667666442 455666666666666666777777777766665542 2233333333332333333
Q ss_pred hHHHHHHHHHHHc
Q 038748 435 PEAVKYAKGMAEK 447 (482)
Q Consensus 435 ~~A~~~~~~m~~~ 447 (482)
+-..+.+.+++..
T Consensus 259 ~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 259 EVTERNLSQLKLS 271 (299)
T ss_pred HHHHHHHHHHHhc
Confidence 3344555555433
No 122
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.53 E-value=8e-05 Score=74.64 Aligned_cols=220 Identities=11% Similarity=0.076 Sum_probs=116.7
Q ss_pred CHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHH
Q 038748 169 DVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYL 248 (482)
Q Consensus 169 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~ 248 (482)
+...+..|+..+...+++++|.++.+......+-....|..+...+.+.++.+.+..+ .+. +..+
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l---~~~~---------- 94 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLI---DSFS---------- 94 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhh---hhcc----------
Confidence 3445666667776777777777766654433333444444444455566665555444 222 1111
Q ss_pred HHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCC
Q 038748 249 ITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNE 328 (482)
Q Consensus 249 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 328 (482)
.. .++.-+..+...|...+ -+...+..+..+|-+.|+.+++..++++++ +.. +-|..+.|.+...|+.. +
T Consensus 95 ----~~-~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L-~~D-~~n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 95 ----QN-LKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLV-KAD-RDNPEIVKKLATSYEEE-D 164 (906)
T ss_pred ----cc-cchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHH-hcC-cccHHHHHHHHHHHHHh-h
Confidence 11 33333333333344322 234466667777777788888888888776 333 44566777777777777 7
Q ss_pred HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-------------------ccChhhHHHH
Q 038748 329 TGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNEN-------------------VLNHENCRAA 389 (482)
Q Consensus 329 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-------------------~~~~~~~~~l 389 (482)
.++|++++.+.... +...+++..+.++|.++..... .--..++-.+
T Consensus 165 L~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l 229 (906)
T PRK14720 165 KEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDL 229 (906)
T ss_pred HHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHH
Confidence 77777777766553 3333444445555554444321 1122233334
Q ss_pred HHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 038748 390 VRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLC 429 (482)
Q Consensus 390 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 429 (482)
-..|-..++++++..+++.+.+..- -|.....-++.+|.
T Consensus 230 ~~~y~~~~~~~~~i~iLK~iL~~~~-~n~~a~~~l~~~y~ 268 (906)
T PRK14720 230 YEPYKALEDWDEVIYILKKILEHDN-KNNKAREELIRFYK 268 (906)
T ss_pred HHHHhhhhhhhHHHHHHHHHHhcCC-cchhhHHHHHHHHH
Confidence 4455555556666666666655432 12334444444443
No 123
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.52 E-value=0.00015 Score=68.91 Aligned_cols=193 Identities=11% Similarity=-0.022 Sum_probs=117.7
Q ss_pred HHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 038748 212 EGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQ 291 (482)
Q Consensus 212 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 291 (482)
.+......|.+|+.+++.+..+ .. ....|..+...|... |+++.|.++|.+. ..++-.|.+|.+.|
T Consensus 740 eaai~akew~kai~ildniqdq-k~---~s~yy~~iadhyan~-~dfe~ae~lf~e~---------~~~~dai~my~k~~ 805 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQ-KT---ASGYYGEIADHYANK-GDFEIAEELFTEA---------DLFKDAIDMYGKAG 805 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhh-cc---ccccchHHHHHhccc-hhHHHHHHHHHhc---------chhHHHHHHHhccc
Confidence 3344556666677776666532 11 122455555666666 8888887777542 23455677788888
Q ss_pred ChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 038748 292 NLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLF 371 (482)
Q Consensus 292 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 371 (482)
++..|.++-.+.. |-+.....|-+-..-+-+.|++.+|+++|-.+.+ |+ ..|..|-+.|..+..+.+.
T Consensus 806 kw~da~kla~e~~---~~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~-----~aiqmydk~~~~ddmirlv 873 (1636)
T KOG3616|consen 806 KWEDAFKLAEECH---GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PD-----KAIQMYDKHGLDDDMIRLV 873 (1636)
T ss_pred cHHHHHHHHHHhc---CchhHHHHHHHhHHhHHhhcchhhhhheeEEccC----ch-----HHHHHHHhhCcchHHHHHH
Confidence 8888777766553 4444556666666666677777777777644332 33 2456677777777777766
Q ss_pred HHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 038748 372 NEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAK 442 (482)
Q Consensus 372 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 442 (482)
++-.... -..|...+..-|...|+...|.+.|-+.. -|..-++.|-..+.|++|.++-+
T Consensus 874 ~k~h~d~---l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 874 EKHHGDH---LHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred HHhChhh---hhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHHh
Confidence 6543222 22345556666777777777777664432 34555666777777777776654
No 124
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.51 E-value=9.6e-05 Score=74.08 Aligned_cols=130 Identities=15% Similarity=0.105 Sum_probs=68.2
Q ss_pred CCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHH------------------HHH
Q 038748 99 HSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITT------------------FDV 160 (482)
Q Consensus 99 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~------------------~~~ 160 (482)
.+...+..|+..+...+++++|.++.+...+..+-....|..+...+.+.++..++..+ ...
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~~~ve~~~~~ 108 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKWAIVEHICDK 108 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccchhHHHHHHHH
Confidence 34566677777776777777777777766555543333444443355555554444443 112
Q ss_pred HHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 038748 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMV 231 (482)
Q Consensus 161 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 231 (482)
|.+.+ -+...+-.+..+|-+.|+.++|..+++++..-.+-|+.+.|.+...|... ++++|+.++.+..
T Consensus 109 i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV 176 (906)
T PRK14720 109 ILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAI 176 (906)
T ss_pred HHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHH
Confidence 22211 11234444555555555555555555554443345555555555555555 5555555555443
No 125
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.50 E-value=0.0015 Score=63.93 Aligned_cols=228 Identities=11% Similarity=0.062 Sum_probs=143.8
Q ss_pred HHHHHHHhhCCCCc----cHHHHhhhcCCCCCHHHHHHHHHhhcCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhC
Q 038748 39 IKTLCEIIANTPSP----TVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKN 114 (482)
Q Consensus 39 ~~~~~~~l~~~~~~----~~~~~l~~~~~~~~~~~~~~ll~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 114 (482)
++.+++.+...+-. ...+.+++.+..+-...+..+.....|..++|..+++.... -...|..+...+-..|.+.
T Consensus 13 ~rpi~d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~--~~~~D~~tLq~l~~~y~d~ 90 (932)
T KOG2053|consen 13 LRPIYDLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYG--LKGTDDLTLQFLQNVYRDL 90 (932)
T ss_pred HhHHHHHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhcc--CCCCchHHHHHHHHHHHHH
Confidence 44555555544332 36666777777777777777777778899999988887655 2334888899999999999
Q ss_pred CCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcC-C--------
Q 038748 115 CLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDG-K-------- 185 (482)
Q Consensus 115 ~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g-~-------- 185 (482)
++.++|..+|+...+..+- ..-...+..+|++.+++.+-.++--++-+. ..-..+.|=++++.....- .
T Consensus 91 ~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i 168 (932)
T KOG2053|consen 91 GKLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPI 168 (932)
T ss_pred hhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccch
Confidence 9999999999998887654 777777888888888776655544444432 2224455444555554331 1
Q ss_pred -hHhHHHHHHHhhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHH
Q 038748 186 -TIDAWQFLRVVDG--RIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETV 262 (482)
Q Consensus 186 -~~~a~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~ 262 (482)
..-|...++.+.. |--.+..=...-...+...|++++|.+++..-... ...+.+...-+.-+..+... +++.+..
T Consensus 169 ~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~-~l~~~~~~l~~~~~dllk~l-~~w~~l~ 246 (932)
T KOG2053|consen 169 LLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAE-KLTSANLYLENKKLDLLKLL-NRWQELF 246 (932)
T ss_pred hHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-hccccchHHHHHHHHHHHHh-cChHHHH
Confidence 1224444444322 21122222333344556788899999988443322 33333333334445555555 8899999
Q ss_pred HHHHHHHHcC
Q 038748 263 NSLKRMMERG 272 (482)
Q Consensus 263 ~~~~~m~~~~ 272 (482)
++-.++...|
T Consensus 247 ~l~~~Ll~k~ 256 (932)
T KOG2053|consen 247 ELSSRLLEKG 256 (932)
T ss_pred HHHHHHHHhC
Confidence 9988888876
No 126
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.50 E-value=6e-05 Score=74.65 Aligned_cols=131 Identities=7% Similarity=-0.009 Sum_probs=79.1
Q ss_pred CHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHH
Q 038748 169 DVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYL 248 (482)
Q Consensus 169 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~ 248 (482)
+...+-.|.....+.|..++|+.+++.+.+-.+-+......+..++.+.+++++|+..+++.. ...|++......+.
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l---~~~p~~~~~~~~~a 161 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYF---SGGSSSAREILLEA 161 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHh---hcCCCCHHHHHHHH
Confidence 455555566666666666666666666555445555556666666666666666666666664 33566666666666
Q ss_pred HHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 038748 249 ITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMV 304 (482)
Q Consensus 249 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 304 (482)
.++... |++++|..+|+++...+ +-+..++..+..++...|+.++|...|+..+
T Consensus 162 ~~l~~~-g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~ 215 (694)
T PRK15179 162 KSWDEI-GQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGL 215 (694)
T ss_pred HHHHHh-cchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 666666 66666666666666522 2235556666666666666666666666665
No 127
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.49 E-value=0.001 Score=64.42 Aligned_cols=186 Identities=7% Similarity=-0.000 Sum_probs=126.0
Q ss_pred HhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHH
Q 038748 111 LGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAW 190 (482)
Q Consensus 111 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 190 (482)
....|.+++|..+|.+.++ |..|=..|-..|.|++|.++-+.-.+-.+ ..||..-..-+-..+|.+.|+
T Consensus 810 AieLgMlEeA~~lYr~ckR--------~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~Al 878 (1416)
T KOG3617|consen 810 AIELGMLEEALILYRQCKR--------YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAAL 878 (1416)
T ss_pred HHHHhhHHHHHHHHHHHHH--------HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHH
Confidence 3457889999999999887 44555667778999999998876444222 345655666666778999999
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHH
Q 038748 191 QFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMME 270 (482)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~ 270 (482)
+.|++-.. +--.++..|. .++...+.+.+.+. +. +.......|+...|+.+.|+.+|.....
T Consensus 879 eyyEK~~~---hafev~rmL~------e~p~~~e~Yv~~~~--------d~-~L~~WWgqYlES~GemdaAl~~Y~~A~D 940 (1416)
T KOG3617|consen 879 EYYEKAGV---HAFEVFRMLK------EYPKQIEQYVRRKR--------DE-SLYSWWGQYLESVGEMDAALSFYSSAKD 940 (1416)
T ss_pred HHHHhcCC---hHHHHHHHHH------hChHHHHHHHHhcc--------ch-HHHHHHHHHHhcccchHHHHHHHHHhhh
Confidence 99986542 1112222221 23333344444443 12 2223344555555999999999987654
Q ss_pred cCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038748 271 RGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVY 341 (482)
Q Consensus 271 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 341 (482)
|-.+++..|-.|+.++|.++-++- -|......|.+.|-..|++.+|..+|.+...
T Consensus 941 ---------~fs~VrI~C~qGk~~kAa~iA~es-------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 941 ---------YFSMVRIKCIQGKTDKAARIAEES-------GDKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred ---------hhhheeeEeeccCchHHHHHHHhc-------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 556777888889999998887654 2666777888999999999999988876643
No 128
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.45 E-value=1.6e-05 Score=62.51 Aligned_cols=93 Identities=5% Similarity=-0.115 Sum_probs=51.0
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhc
Q 038748 104 WNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRD 183 (482)
Q Consensus 104 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 183 (482)
+..+...+...|++++|...|+......+.+..+|..+..++...|++++|...|+.....+. .+...+..+..++...
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p-~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA-SHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHc
Confidence 333445555555555565555555555555555555555555555555555555555555432 2445555555555555
Q ss_pred CChHhHHHHHHHhh
Q 038748 184 GKTIDAWQFLRVVD 197 (482)
Q Consensus 184 g~~~~a~~~~~~~~ 197 (482)
|++++|...|+...
T Consensus 106 g~~~eAi~~~~~Al 119 (144)
T PRK15359 106 GEPGLAREAFQTAI 119 (144)
T ss_pred CCHHHHHHHHHHHH
Confidence 55555555555543
No 129
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.43 E-value=1.6e-05 Score=66.24 Aligned_cols=118 Identities=12% Similarity=0.093 Sum_probs=78.3
Q ss_pred CCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHH-HhcCC--hHhHH
Q 038748 114 NCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAI-CRDGK--TIDAW 190 (482)
Q Consensus 114 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~g~--~~~a~ 190 (482)
.++.+++...++...+.++.+...|..+...|...|++++|...|+...+... -+...+..+..++ ...|+ .++|.
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P-~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRG-ENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 45556666666776666666777777777777777777777777777766542 2555566665543 45555 36777
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHH
Q 038748 191 QFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVI 232 (482)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 232 (482)
+++++.....+.+..++..+...+.+.|++++|...|+++.+
T Consensus 131 ~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 131 EMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 777776555556666777777777777777777777777653
No 130
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.42 E-value=0.0024 Score=62.59 Aligned_cols=368 Identities=12% Similarity=0.021 Sum_probs=191.9
Q ss_pred CCCHHHHHHHHH---hhcCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHH
Q 038748 64 RVSQETVEQVLK---FSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFAS 140 (482)
Q Consensus 64 ~~~~~~~~~ll~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 140 (482)
.++......++. ...++.+.|..+++.+..+ -|+.+....+..+|.+.+++.+-.+.--++.+.-+-+...+=+
T Consensus 73 ~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~---~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWs 149 (932)
T KOG2053|consen 73 KGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQK---YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWS 149 (932)
T ss_pred CCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh---CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHH
Confidence 344444555555 3368889999999987763 3557788888888999888776555544544443334444444
Q ss_pred HHHHHHhhC----------ChhhHHHHHHHHHhcC-CCCCHhhHHHHHHHHHhcCChHhHHHHHHH-hh-CCCCCCHHHH
Q 038748 141 VFSSYVVAD----------RVKDAITTFDVMEQYG-CKHDVFALNSLLSAICRDGKTIDAWQFLRV-VD-GRIKPDNDTY 207 (482)
Q Consensus 141 li~~~~~~~----------~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~-~~-~~~~~~~~~~ 207 (482)
++..+.+.- -..-|...++.+.+.+ -.-+..-...-...+-..|++++|++++.. .. .-..-+...-
T Consensus 150 V~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~ 229 (932)
T KOG2053|consen 150 VISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLE 229 (932)
T ss_pred HHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHH
Confidence 555544431 1234666777776654 222222233334556678999999998854 33 2334455556
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHH----HHHHH----Hcc----CCChHHHHHHHHHHHHcCCCC
Q 038748 208 AILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDS----YLITL----LKG----CDGIYETVNSLKRMMERGCNP 275 (482)
Q Consensus 208 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~----l~~~~----~~~----~~~~~~a~~~~~~m~~~~~~~ 275 (482)
+.-+..+...++|.+..++-.++..+ .+|+..+|.- ++... ... .+..+...+...+.....
T Consensus 230 ~~~~dllk~l~~w~~l~~l~~~Ll~k---~~Ddy~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~--- 303 (932)
T KOG2053|consen 230 NKKLDLLKLLNRWQELFELSSRLLEK---GNDDYKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSK--- 303 (932)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHh---CCcchHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhccc---
Confidence 67778888889999988888888765 3444212111 11111 000 022222233222222221
Q ss_pred CHHHHHHHHHHHH---hcCChhHHHHHHHHhhcccCCCC----C---------HHHHHHHHHHHHh--------------
Q 038748 276 GMTFFKLAFEECL---TGQNLRGAEFIWGAMVGRIGFRP----D---------THMYNMMISLYCY-------------- 325 (482)
Q Consensus 276 ~~~~~~~li~~~~---~~g~~~~a~~~~~~~~~~~~~~~----~---------~~~~~~li~~~~~-------------- 325 (482)
....|-+-+.+.. .-|+.+++...|-+- .|-.| | ......++..+..
T Consensus 304 ~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~k---fg~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~ 380 (932)
T KOG2053|consen 304 SRGPYLARLELDKRYKLIGDSEEMLSYYFKK---FGDKPCCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQ 380 (932)
T ss_pred ccCcHHHHHHHHHHhcccCChHHHHHHHHHH---hCCCcHhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHH
Confidence 1112223333332 335555544333221 12111 1 1111122222211
Q ss_pred ----------cCC-----HHHHHHHHHHHH---HCC------CCCCHh---------hHHHHHHHHHhcCCHH---HHHH
Q 038748 326 ----------SNE-----TGAAMKLLDEMV---YNG------AFPDIQ---------TYNILFEFLVKGRKLW---EASG 369 (482)
Q Consensus 326 ----------~~~-----~~~a~~~~~~m~---~~g------~~p~~~---------~~~~ll~~~~~~g~~~---~a~~ 369 (482)
.|. .+....++.+.. ++| +-|+.. +.+.++..+.+.++.. +|+-
T Consensus 381 h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~ 460 (932)
T KOG2053|consen 381 HLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAIT 460 (932)
T ss_pred HHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 121 122222332221 223 223332 2356667777777655 3444
Q ss_pred HHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 038748 370 LFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMA 445 (482)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 445 (482)
+++........ |..+-..+|+.|+-.|-+..|.++|+.+--+.+..|..-|. +..-+...|++..+...+....
T Consensus 461 LLE~glt~s~h-nf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~~~~t~g~~~~~s~~~~~~l 534 (932)
T KOG2053|consen 461 LLENGLTKSPH-NFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFRRAETSGRSSFASNTFNEHL 534 (932)
T ss_pred HHHHHhhcCCc-cHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHHHHHhcccchhHHHHHHHHH
Confidence 55554443322 44555578888888899999999998887666666643332 2234455677777766666543
No 131
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.41 E-value=1.4e-05 Score=66.59 Aligned_cols=128 Identities=13% Similarity=0.081 Sum_probs=108.0
Q ss_pred CCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHH-HhhCC--hhhHH
Q 038748 79 SHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSY-VVADR--VKDAI 155 (482)
Q Consensus 79 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~-~~~~~--~~~a~ 155 (482)
++.+++...++.... ..+.|...|..+...|...|+++.|...|++..+..+.+...+..+..++ ...|+ .++|.
T Consensus 53 ~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 53 QTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred hhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 445666667776665 56778999999999999999999999999999999988999999998874 67777 59999
Q ss_pred HHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHH
Q 038748 156 TTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAI 209 (482)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 209 (482)
+++++..+.+.. +...+..+...+.+.|++++|...|+.+.+..+|+..-+..
T Consensus 131 ~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~ 183 (198)
T PRK10370 131 EMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQL 183 (198)
T ss_pred HHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHH
Confidence 999999997643 77888999999999999999999999988777777655443
No 132
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.37 E-value=3.8e-05 Score=60.44 Aligned_cols=103 Identities=8% Similarity=-0.143 Sum_probs=61.1
Q ss_pred HHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 038748 138 FASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKE 217 (482)
Q Consensus 138 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 217 (482)
+..+...+...|++++|...|+....... .+...|..+..++...|++++|...|+......+.+...+..+..++...
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQP-WSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence 33445555666666666666666665432 25555666666666666666666666665554455666666666666666
Q ss_pred CCHHHHHHHHHHhHHhcCCCCCChhhH
Q 038748 218 RDVANAKKTFGEMVIEVGWDPDNVPAY 244 (482)
Q Consensus 218 ~~~~~a~~~~~~~~~~~~~~p~~~~~~ 244 (482)
|++++|...|+... .+.|++...+
T Consensus 106 g~~~eAi~~~~~Al---~~~p~~~~~~ 129 (144)
T PRK15359 106 GEPGLAREAFQTAI---KMSYADASWS 129 (144)
T ss_pred CCHHHHHHHHHHHH---HhCCCChHHH
Confidence 66666666666665 2345444333
No 133
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.36 E-value=0.0013 Score=65.09 Aligned_cols=150 Identities=11% Similarity=-0.006 Sum_probs=111.0
Q ss_pred CchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHH--HHHHHHHHHHhhCChhhHHHH
Q 038748 80 HPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLA--TFASVFSSYVVADRVKDAITT 157 (482)
Q Consensus 80 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~a~~~ 157 (482)
+...|.+.|+.+.. -...+...+....+.|++..+++.|..+.-..-+..+.-.. .|....-.|.+.++...|..-
T Consensus 507 Dm~RA~kCf~KAFe--LDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~ 584 (1238)
T KOG1127|consen 507 DMKRAKKCFDKAFE--LDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCE 584 (1238)
T ss_pred HHHHHHHHHHHHhc--CCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHH
Confidence 55677777876655 45567788999999999999999999995555555443222 233344557778999999999
Q ss_pred HHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHH
Q 038748 158 FDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVI 232 (482)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 232 (482)
|+...+..+ -|...|..+..+|.++|.+..|.++|.+...-.+.+...---..-.-+..|.+.+|+..+.....
T Consensus 585 fQsALR~dP-kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 585 FQSALRTDP-KDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred HHHHhcCCc-hhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 999988654 37889999999999999999999999886643233333333333445678999999998887764
No 134
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.33 E-value=3.4e-05 Score=60.30 Aligned_cols=107 Identities=12% Similarity=0.042 Sum_probs=62.2
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCC
Q 038748 124 IKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPD 203 (482)
Q Consensus 124 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 203 (482)
|+......+.+......+...+...|++++|.+.|+.....+. .+...+..+...+...|++++|..+++......+.+
T Consensus 6 ~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 84 (135)
T TIGR02552 6 LKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDP-YNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDD 84 (135)
T ss_pred HHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3444444444444555555666666666666666666655432 245555556666666666666666666654444555
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 038748 204 NDTYAILLEGWEKERDVANAKKTFGEMV 231 (482)
Q Consensus 204 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 231 (482)
...+..+..+|...|++++|...|+...
T Consensus 85 ~~~~~~la~~~~~~g~~~~A~~~~~~al 112 (135)
T TIGR02552 85 PRPYFHAAECLLALGEPESALKALDLAI 112 (135)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5666666666666666666666666655
No 135
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.33 E-value=0.00081 Score=61.31 Aligned_cols=155 Identities=13% Similarity=0.045 Sum_probs=113.4
Q ss_pred HHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHhcCCH
Q 038748 286 ECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPD-IQTYNILFEFLVKGRKL 364 (482)
Q Consensus 286 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~ 364 (482)
.+...|+++.|+..+..+++.. +-|...+......+.+.|+..+|.+.++++... .|+ ....-.+..++.+.|++
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~~--P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~ 390 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAAQ--PDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKP 390 (484)
T ss_pred HHHHhcccchHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCCh
Confidence 4456788899999999887332 345556666677888999999999999988885 455 44555667788889999
Q ss_pred HHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 038748 365 WEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGM 444 (482)
Q Consensus 365 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 444 (482)
.+|..+++........ |+..|..|.++|...|+..++..-..+ +|...|+++.|...+...
T Consensus 391 ~eai~~L~~~~~~~p~-dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A 451 (484)
T COG4783 391 QEAIRILNRYLFNDPE-DPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIFLMRA 451 (484)
T ss_pred HHHHHHHHHHhhcCCC-CchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHHHHHH
Confidence 9999999888776544 788899999999999988887765544 456678899999888887
Q ss_pred HHcC--CCCCHHHHHHHHHHH
Q 038748 445 AEKG--IQVTPFALSKLKQIL 463 (482)
Q Consensus 445 ~~~~--~~~~~~~~~~l~~~~ 463 (482)
.+.. -.|+..-+...|...
T Consensus 452 ~~~~~~~~~~~aR~dari~~~ 472 (484)
T COG4783 452 SQQVKLGFPDWARADARIDQL 472 (484)
T ss_pred HHhccCCcHHHHHHHHHHHHH
Confidence 6653 123444444444443
No 136
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.32 E-value=0.00074 Score=56.13 Aligned_cols=190 Identities=13% Similarity=0.035 Sum_probs=129.0
Q ss_pred hcCCchhHhHHhhhhhcC--CC-CCCCH-hhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChh
Q 038748 77 SYSHPGPAVKFFRWSAYQ--LN-DKHSP-YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVK 152 (482)
Q Consensus 77 ~~~~~~~a~~~~~~~~~~--~~-~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 152 (482)
...++++..+++..+... .+ ..++. ..|..++-+....|+.+.|..+++++..+-+-+..+-..-.-.+-..|+++
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchh
Confidence 355677777777765553 23 33443 346677777778888888888888888876544443333333344568888
Q ss_pred hHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHH
Q 038748 153 DAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVI 232 (482)
Q Consensus 153 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 232 (482)
+|+++++.+.+.+ +.|..++--=+...-..|+.-+|++-+....+.+..|...|.-+...|...|++++|.-.++++.
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l- 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELL- 181 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH-
Confidence 8888888888765 34666666666666667777778777777666677888888888888888888888888888886
Q ss_pred hcCCCCCChhhHHHHHHHHHccCC---ChHHHHHHHHHHHHc
Q 038748 233 EVGWDPDNVPAYDSYLITLLKGCD---GIYETVNSLKRMMER 271 (482)
Q Consensus 233 ~~~~~p~~~~~~~~l~~~~~~~~~---~~~~a~~~~~~m~~~ 271 (482)
-+.|-+...+..+...++.. | +...+.+.|.+..+.
T Consensus 182 --l~~P~n~l~f~rlae~~Yt~-gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 182 --LIQPFNPLYFQRLAEVLYTQ-GGAENLELARKYYERALKL 220 (289)
T ss_pred --HcCCCcHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHh
Confidence 44665555555555555544 3 344556666665553
No 137
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.30 E-value=1.4e-06 Score=49.69 Aligned_cols=33 Identities=39% Similarity=0.575 Sum_probs=25.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 038748 420 TGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVT 452 (482)
Q Consensus 420 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 452 (482)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 677777777777777777777777777777776
No 138
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.27 E-value=0.0011 Score=55.03 Aligned_cols=186 Identities=14% Similarity=0.127 Sum_probs=85.4
Q ss_pred CHHHHHHHHHHhHHh--cC-CCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHhcCChh
Q 038748 219 DVANAKKTFGEMVIE--VG-WDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFK-LAFEECLTGQNLR 294 (482)
Q Consensus 219 ~~~~a~~~~~~~~~~--~~-~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~-~li~~~~~~g~~~ 294 (482)
+.++..+++.++... .| ..++-...|..++.+.... ++.+.|...++.+...- |...-.. .-.-.+-..|+++
T Consensus 27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~-~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDT-GRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchh
Confidence 344444444444321 12 3333334444445555555 55555555555554432 2221111 1111223345566
Q ss_pred HHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 038748 295 GAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374 (482)
Q Consensus 295 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 374 (482)
+|.++++.++++. +.|..++-.-+...-..|+.-+|++-+.+..+. +.-|...|.-+...|...|++++|.-.++++
T Consensus 104 ~A~e~y~~lL~dd--pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 104 EAIEYYESLLEDD--PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hHHHHHHHHhccC--cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 6666666555222 334444444444444445545555555554443 3345566666666666666666666666665
Q ss_pred HhCCCccChhhHHHHHHHHhcC---CChHHHHHHHHHHHH
Q 038748 375 VKNENVLNHENCRAAVRVYMDS---DDPYVAIKFWKYMIE 411 (482)
Q Consensus 375 ~~~~~~~~~~~~~~li~~~~~~---~~~~~a~~~~~~m~~ 411 (482)
+-..+. ++..+..+...+.-. .+.+.+.++|.+..+
T Consensus 181 ll~~P~-n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 181 LLIQPF-NPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred HHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 543221 222333333333222 234455556655555
No 139
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.26 E-value=2.4e-05 Score=71.85 Aligned_cols=120 Identities=14% Similarity=0.015 Sum_probs=63.1
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHH
Q 038748 347 DIQTYNILFEFLVKGRKLWEASGLFNEMVKN--ENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLL 424 (482)
Q Consensus 347 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 424 (482)
+...+..++..+....+++.+..++.+.... ....-..|..++|+.|.+.|..+.++++++.=...|+-||..++|.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 4444555555555555555555555555443 11112233445555555555555555555555555555665666666
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 038748 425 VAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKA 466 (482)
Q Consensus 425 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 466 (482)
+..+.+.|++..|.++..+|...+...++.|+...+.+|.+.
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 666666666666665555555554444555544444444443
No 140
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.25 E-value=1.9e-06 Score=49.02 Aligned_cols=33 Identities=33% Similarity=0.588 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 038748 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPD 347 (482)
Q Consensus 315 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 347 (482)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 567777777777777777777777777777665
No 141
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.24 E-value=0.00012 Score=57.95 Aligned_cols=126 Identities=10% Similarity=0.028 Sum_probs=82.2
Q ss_pred hhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCH--hhHHHH
Q 038748 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLS---LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDV--FALNSL 176 (482)
Q Consensus 102 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l 176 (482)
..|..++..+. .++...+...++.+...++.+ ....-.+...+...|++++|...|+........++. ...-.|
T Consensus 13 ~~y~~~~~~~~-~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 13 ALYEQALQALQ-AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHHHH-CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 44555555553 677777777788887776544 233444556777778888888888888776522221 233445
Q ss_pred HHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038748 177 LSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGE 229 (482)
Q Consensus 177 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 229 (482)
...+...|++++|+..++.... .......+.....+|.+.|++++|...|+.
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~-~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPD-EAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccC-cchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 6667777888888887766432 233445666777778888888888877765
No 142
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.23 E-value=2.5e-06 Score=48.17 Aligned_cols=33 Identities=21% Similarity=0.205 Sum_probs=22.1
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 038748 419 ETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQV 451 (482)
Q Consensus 419 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 451 (482)
.+|+.++.+|++.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 466666666666666666666666666666655
No 143
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.21 E-value=7e-05 Score=68.53 Aligned_cols=123 Identities=18% Similarity=0.150 Sum_probs=64.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 038748 280 FKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLV 359 (482)
Q Consensus 280 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 359 (482)
...++..+...++++.|..+|+++. +. .|+. ...++..+...++-.+|.+++++..+.. +-+......-...|.
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~-~~--~pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLR-ER--DPEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHH-hc--CCcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 3444455555566666666666664 22 2332 2335555555555566666666555431 113444444444555
Q ss_pred hcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHH
Q 038748 360 KGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYM 409 (482)
Q Consensus 360 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 409 (482)
+.++.+.|+.+.+++.+..+. +..+|..|..+|...|+++.|+-.++.+
T Consensus 246 ~k~~~~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 566666666666666553221 3345666666666666666666555544
No 144
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.20 E-value=2.7e-06 Score=48.01 Aligned_cols=33 Identities=33% Similarity=0.584 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 038748 314 HMYNMMISLYCYSNETGAAMKLLDEMVYNGAFP 346 (482)
Q Consensus 314 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 346 (482)
.+|+.+|.+|++.|+++.|.++|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 355666666666666666666666666655554
No 145
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.17 E-value=0.0001 Score=57.58 Aligned_cols=98 Identities=8% Similarity=0.024 Sum_probs=82.6
Q ss_pred CHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHH
Q 038748 100 SPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSA 179 (482)
Q Consensus 100 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 179 (482)
+......+...+...|++++|.+.|+.+...++.+...+..+..++...|++++|..+++...+.+ +.+...+..+...
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~ 94 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAEC 94 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHH
Confidence 456677777888889999999999999988888788889999999999999999999999887765 3456777778888
Q ss_pred HHhcCChHhHHHHHHHhhC
Q 038748 180 ICRDGKTIDAWQFLRVVDG 198 (482)
Q Consensus 180 ~~~~g~~~~a~~~~~~~~~ 198 (482)
+...|++++|.+.|+....
T Consensus 95 ~~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 95 LLALGEPESALKALDLAIE 113 (135)
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 9999999999999988654
No 146
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.16 E-value=7.3e-05 Score=68.41 Aligned_cols=125 Identities=10% Similarity=0.081 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 038748 136 ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWE 215 (482)
Q Consensus 136 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 215 (482)
.....|+..+...++++.|.++|+++.+.. |+ ....++..+...++-.+|.+++++.....+.+...+..-...+.
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 344455555566677777777777776643 33 33345666666666666777666644444556666666666677
Q ss_pred hcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHH
Q 038748 216 KERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRM 268 (482)
Q Consensus 216 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m 268 (482)
+.++++.|+.+.+++. .+.|++..+|..|..+|... |+++.|+..++.+
T Consensus 246 ~k~~~~lAL~iAk~av---~lsP~~f~~W~~La~~Yi~~-~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 246 SKKKYELALEIAKKAV---ELSPSEFETWYQLAECYIQL-GDFENALLALNSC 294 (395)
T ss_pred hcCCHHHHHHHHHHHH---HhCchhHHHHHHHHHHHHhc-CCHHHHHHHHhcC
Confidence 7777777777777765 44666666777777777777 7777777666654
No 147
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.06 E-value=6.2e-05 Score=69.19 Aligned_cols=126 Identities=14% Similarity=0.107 Sum_probs=103.5
Q ss_pred cCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh
Q 038748 271 RGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIG-FRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQ 349 (482)
Q Consensus 271 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 349 (482)
.+.+.+...+..+++.+....+++.+..++........ ...-..|..++|+.|.+.|..++++.+++.=...|+-||..
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 45667788888899999999999999999888852211 11233455699999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcC
Q 038748 350 TYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDS 396 (482)
Q Consensus 350 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 396 (482)
++|.+|..+.+.|++..|.++...|...+...+..|+..-+.+|.+.
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999999988887776777777666666655
No 148
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.03 E-value=0.00044 Score=54.59 Aligned_cols=85 Identities=8% Similarity=-0.035 Sum_probs=35.2
Q ss_pred HHHHccCCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhc
Q 038748 249 ITLLKGCDGIYETVNSLKRMMERGCNPG--MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYS 326 (482)
Q Consensus 249 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 326 (482)
..++.. |++++|...|+........++ ......+...+...|++++|...++... .. ......+......|.+.
T Consensus 56 ~~~~~~-g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~-~~--~~~~~~~~~~Gdi~~~~ 131 (145)
T PF09976_consen 56 KAAYEQ-GDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIP-DE--AFKALAAELLGDIYLAQ 131 (145)
T ss_pred HHHHHC-CCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcc-Cc--chHHHHHHHHHHHHHHC
Confidence 334444 455555555544444331111 1122223344444555555555554331 11 12223334444445555
Q ss_pred CCHHHHHHHHH
Q 038748 327 NETGAAMKLLD 337 (482)
Q Consensus 327 ~~~~~a~~~~~ 337 (482)
|++++|...|+
T Consensus 132 g~~~~A~~~y~ 142 (145)
T PF09976_consen 132 GDYDEARAAYQ 142 (145)
T ss_pred CCHHHHHHHHH
Confidence 55555555444
No 149
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.01 E-value=9.3e-05 Score=53.12 Aligned_cols=77 Identities=18% Similarity=0.396 Sum_probs=46.1
Q ss_pred HHHHHHhcCChhHHHHHHHHhhcccCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHCCCCCCHhhHHH
Q 038748 283 AFEECLTGQNLRGAEFIWGAMVGRIGF-RPDTHMYNMMISLYCYSN--------ETGAAMKLLDEMVYNGAFPDIQTYNI 353 (482)
Q Consensus 283 li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~--------~~~~a~~~~~~m~~~g~~p~~~~~~~ 353 (482)
.|..|...+++...-.+|+.+ ++.|+ .|+..+|+.++.+.++.. ++-..+.+|++|...+++|+..||+.
T Consensus 31 ~I~~~~~~~d~N~I~~lYqsl-kRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSL-KRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHH-HhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 344445556666666666666 46666 566666666666655432 23345666667776667777777777
Q ss_pred HHHHHHh
Q 038748 354 LFEFLVK 360 (482)
Q Consensus 354 ll~~~~~ 360 (482)
++..+.+
T Consensus 110 vl~~Llk 116 (120)
T PF08579_consen 110 VLGSLLK 116 (120)
T ss_pred HHHHHHH
Confidence 6666543
No 150
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.98 E-value=1e-05 Score=44.42 Aligned_cols=29 Identities=38% Similarity=0.602 Sum_probs=18.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 038748 420 TGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448 (482)
Q Consensus 420 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 448 (482)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56666666666666666666666666555
No 151
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.97 E-value=0.0002 Score=51.44 Aligned_cols=76 Identities=9% Similarity=0.115 Sum_probs=46.9
Q ss_pred HHHHhcCCChHHHHHHHHHHHHcCC-CCChhhHHHHHHHHHhcC--------ChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 038748 390 VRVYMDSDDPYVAIKFWKYMIENHC-SDLSETGNLLVAGLCDMH--------MLPEAVKYAKGMAEKGIQVTPFALSKLK 460 (482)
Q Consensus 390 i~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~~~~~~~~~~~~l~ 460 (482)
|..+...+++.....+|+.++..|+ .|+..+|+.++.+.++.. +.-+++.+|+.|...+++|+..+|+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3344444666666666666666666 566666666665555432 2334566777777777777777777777
Q ss_pred HHHHH
Q 038748 461 QILIK 465 (482)
Q Consensus 461 ~~~~~ 465 (482)
..+.+
T Consensus 112 ~~Llk 116 (120)
T PF08579_consen 112 GSLLK 116 (120)
T ss_pred HHHHH
Confidence 76654
No 152
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.97 E-value=0.01 Score=53.31 Aligned_cols=102 Identities=16% Similarity=0.056 Sum_probs=49.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCCh
Q 038748 320 ISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDP 399 (482)
Q Consensus 320 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 399 (482)
|.-+...|+...|.++-.+.. .|+...|...+.+++..++|++-.++.+. +-++.-|..++.+|.+.|+.
T Consensus 184 i~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCH
Confidence 334444555555544443331 24555555555555555555554443221 11234455555555555555
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 038748 400 YVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYA 441 (482)
Q Consensus 400 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 441 (482)
.+|.++... + .+..-+..|.+.|++.+|.+..
T Consensus 254 ~eA~~yI~k-----~-----~~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 254 KEASKYIPK-----I-----PDEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred HHHHHHHHh-----C-----ChHHHHHHHHHCCCHHHHHHHH
Confidence 555555544 1 1133344555555555555443
No 153
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.97 E-value=0.00033 Score=53.16 Aligned_cols=94 Identities=21% Similarity=0.096 Sum_probs=41.5
Q ss_pred HHHHHHHHHhhCChhhHHHHHHHHHhcCCC--CCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCC---CCCHHHHHHHHH
Q 038748 138 FASVFSSYVVADRVKDAITTFDVMEQYGCK--HDVFALNSLLSAICRDGKTIDAWQFLRVVDGRI---KPDNDTYAILLE 212 (482)
Q Consensus 138 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~l~~ 212 (482)
+..+...+.+.|++++|.+.|+.+.+.... .....+..+..++.+.|+++.|...|+.+.... +....++..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 334444444455555555555554433210 012233334444555555555555555433211 112334444445
Q ss_pred HHHhcCCHHHHHHHHHHhH
Q 038748 213 GWEKERDVANAKKTFGEMV 231 (482)
Q Consensus 213 ~~~~~~~~~~a~~~~~~~~ 231 (482)
++.+.|++++|...++++.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~ 103 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVI 103 (119)
T ss_pred HHHHhCChHHHHHHHHHHH
Confidence 5555555555555555554
No 154
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.92 E-value=0.00031 Score=62.21 Aligned_cols=130 Identities=11% Similarity=0.057 Sum_probs=88.2
Q ss_pred hhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-hCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHH
Q 038748 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVV-ADRVKDAITTFDVMEQYGCKHDVFALNSLLSAI 180 (482)
Q Consensus 102 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 180 (482)
.+|..++...-+.+..+.|..+|.+..+.+..+..+|......-.. .++.+.|..+|+...+. +..+...|..-++.+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 4677777777777778888888888876555555556555555233 46666688888877765 334667777777778
Q ss_pred HhcCChHhHHHHHHHhhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHhHH
Q 038748 181 CRDGKTIDAWQFLRVVDGRIKPDN---DTYAILLEGWEKERDVANAKKTFGEMVI 232 (482)
Q Consensus 181 ~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 232 (482)
...|+.+.|..+|+.....+.++. ..|...+..=.+.|+++.+.++.+++..
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 888888888888888665544433 5777777777788888888877777764
No 155
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.91 E-value=1.3e-05 Score=43.98 Aligned_cols=29 Identities=38% Similarity=0.622 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 038748 315 MYNMMISLYCYSNETGAAMKLLDEMVYNG 343 (482)
Q Consensus 315 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g 343 (482)
+|+++|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555544
No 156
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.87 E-value=0.00054 Score=60.71 Aligned_cols=131 Identities=11% Similarity=0.020 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH-HHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHH
Q 038748 314 HMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEF-LVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRV 392 (482)
Q Consensus 314 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 392 (482)
.+|..++...-+.+..+.|..+|.+..+.+. .+...|...... +...++.+.|..+|+...+. +..+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 4577777777777777888888877775422 123333333333 22345666678888777765 33356667777777
Q ss_pred HhcCCChHHHHHHHHHHHHcCCCCCh---hhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 038748 393 YMDSDDPYVAIKFWKYMIENHCSDLS---ETGNLLVAGLCDMHMLPEAVKYAKGMAEK 447 (482)
Q Consensus 393 ~~~~~~~~~a~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 447 (482)
+.+.++.+.|..+|+..... +.++. ..|...+.-=.+.|+.+.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 77777888888888777654 32322 36777777767777777777777777664
No 157
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.86 E-value=0.00066 Score=51.47 Aligned_cols=105 Identities=17% Similarity=0.022 Sum_probs=61.1
Q ss_pred hhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCC--CCHhhHHHH
Q 038748 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL---SLATFASVFSSYVVADRVKDAITTFDVMEQYGCK--HDVFALNSL 176 (482)
Q Consensus 102 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l 176 (482)
.++..+...+.+.|++++|.+.|+.+....+. ....+..+..++.+.|+++.|...|+.+...... .....+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 34455556666667777777777666655432 2345555666666667777777777666653211 113445555
Q ss_pred HHHHHhcCChHhHHHHHHHhhCCCCCCHHH
Q 038748 177 LSAICRDGKTIDAWQFLRVVDGRIKPDNDT 206 (482)
Q Consensus 177 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 206 (482)
..++.+.|+.++|...++.+....+.+..+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 666666677777777666655444444433
No 158
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.83 E-value=6.1e-05 Score=53.05 Aligned_cols=81 Identities=19% Similarity=0.075 Sum_probs=51.7
Q ss_pred CCChHHHHHHHHHHHHcCCC-CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccHHHHHH
Q 038748 396 SDDPYVAIKFWKYMIENHCS-DLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEE 474 (482)
Q Consensus 396 ~~~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 474 (482)
.|+++.|+.+++.+.+.... ++...+..+..+|.+.|++++|..++++ .+.+. .+......+..++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 46778888888887765421 2344455577778888888888888877 22221 122444455777888888888888
Q ss_pred HHHH
Q 038748 475 LLKK 478 (482)
Q Consensus 475 ~~~~ 478 (482)
++++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8775
No 159
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.81 E-value=0.00048 Score=49.55 Aligned_cols=89 Identities=13% Similarity=0.055 Sum_probs=40.5
Q ss_pred HHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCH
Q 038748 141 VFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDV 220 (482)
Q Consensus 141 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 220 (482)
+...+...|++++|...++...+... .+...+..+..++...|++++|.+.++......+.+..++..+...+...|++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELDP-DNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKY 84 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhH
Confidence 34444444555555555544444321 12233444444444445555555555443332233334444555555555555
Q ss_pred HHHHHHHHHh
Q 038748 221 ANAKKTFGEM 230 (482)
Q Consensus 221 ~~a~~~~~~~ 230 (482)
+.|...+...
T Consensus 85 ~~a~~~~~~~ 94 (100)
T cd00189 85 EEALEAYEKA 94 (100)
T ss_pred HHHHHHHHHH
Confidence 5555555444
No 160
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.78 E-value=0.0079 Score=50.46 Aligned_cols=139 Identities=14% Similarity=0.149 Sum_probs=99.0
Q ss_pred HHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhC------CCCCCHHHHHHH
Q 038748 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDG------RIKPDNDTYAIL 210 (482)
Q Consensus 137 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~------~~~~~~~~~~~l 210 (482)
..+.++.++...|.+.-...++++.++...+.++.....|.+.-.+.||.+.|...|+.+.+ +.+-+..+....
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 45566777777788888888898888877677888888888888889999999988886643 333344444444
Q ss_pred HHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHH
Q 038748 211 LEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFK 281 (482)
Q Consensus 211 ~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 281 (482)
...|.-.+++..|...+.++... +|.++...|.-..+..-. |+..+|++.++.|... .|...+-+
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~---D~~~~~a~NnKALcllYl-g~l~DAiK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRM---DPRNAVANNNKALCLLYL-GKLKDALKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred hhheecccchHHHHHHHhhcccc---CCCchhhhchHHHHHHHH-HHHHHHHHHHHHHhcc--CCccchhh
Confidence 55666778888888888887643 555566666666666666 8888888888888774 34444433
No 161
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.76 E-value=0.022 Score=49.26 Aligned_cols=65 Identities=6% Similarity=0.034 Sum_probs=42.6
Q ss_pred CHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHH---HHHHHHHHhhCChhhHHHHHHHHHhc
Q 038748 100 SPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATF---ASVFSSYVVADRVKDAITTFDVMEQY 164 (482)
Q Consensus 100 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~li~~~~~~~~~~~a~~~~~~~~~~ 164 (482)
+...+-.....+...|++++|.+.|+.+....+.+.... -.+..++.+.+++++|...+++..+.
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 333343444555667788888888888877665433332 45566777778888888888777765
No 162
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.73 E-value=0.031 Score=50.22 Aligned_cols=107 Identities=15% Similarity=0.081 Sum_probs=65.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 038748 279 FFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFL 358 (482)
Q Consensus 279 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 358 (482)
+.+..|.-|...|+...|.++-.+. + .|+..-|-..+.+++..++|++-.++... +-.+..|-.++.+|
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F----k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~ 247 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF----K-VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEAC 247 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc----C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHH
Confidence 3444555666667776666665544 2 36666677777777777777665554321 12346677777777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHH
Q 038748 359 VKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFW 406 (482)
Q Consensus 359 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 406 (482)
.+.|+..+|..+...+ .+..-+..|.++|++.+|.+.-
T Consensus 248 ~~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred HHCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHH
Confidence 7777777776666651 1245566667777777766643
No 163
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.72 E-value=0.00085 Score=48.18 Aligned_cols=93 Identities=12% Similarity=0.051 Sum_probs=59.9
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhc
Q 038748 104 WNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRD 183 (482)
Q Consensus 104 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 183 (482)
|..+...+...|++++|...+++..+..+.+...+..+...+...|++++|.+.|+...+... .+..++..+...+...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP-DNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-cchhHHHHHHHHHHHH
Confidence 445556666677777777777777666555556666666677777777777777776665432 2334566666666677
Q ss_pred CChHhHHHHHHHhh
Q 038748 184 GKTIDAWQFLRVVD 197 (482)
Q Consensus 184 g~~~~a~~~~~~~~ 197 (482)
|+++.|...+....
T Consensus 82 ~~~~~a~~~~~~~~ 95 (100)
T cd00189 82 GKYEEALEAYEKAL 95 (100)
T ss_pred HhHHHHHHHHHHHH
Confidence 77777776666543
No 164
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.71 E-value=0.00049 Score=56.11 Aligned_cols=87 Identities=18% Similarity=0.289 Sum_probs=55.9
Q ss_pred CCHHHHHHHHHHHHh-----cCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhc----------------CCHHHHH
Q 038748 275 PGMTFFKLAFEECLT-----GQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYS----------------NETGAAM 333 (482)
Q Consensus 275 ~~~~~~~~li~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~----------------~~~~~a~ 333 (482)
-+..+|..+++.+.+ .|.++-....+..| .+.|+.-|..+|+.|++.+=+. .+-+-|+
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M-~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKM-DEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHH-HHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 355666666666653 35556666666666 4677777777777777666432 1235567
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHhcC
Q 038748 334 KLLDEMVYNGAFPDIQTYNILFEFLVKGR 362 (482)
Q Consensus 334 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 362 (482)
+++++|...|+.||..|+..+++.+.+.+
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 77777777777777777777777775544
No 165
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.71 E-value=0.026 Score=48.74 Aligned_cols=56 Identities=18% Similarity=0.144 Sum_probs=31.6
Q ss_pred HHHHhcCChHhHHHHHHHhhCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHhHHh
Q 038748 178 SAICRDGKTIDAWQFLRVVDGRIKPDNDTY---AILLEGWEKERDVANAKKTFGEMVIE 233 (482)
Q Consensus 178 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~ 233 (482)
..+...|++++|.+.|+.+....+-+.... -.+..+|.+.+++++|...+++..+.
T Consensus 40 ~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 40 QQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 334455666666666666554333333322 34455666667777777777666644
No 166
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.68 E-value=0.00011 Score=51.73 Aligned_cols=20 Identities=15% Similarity=0.298 Sum_probs=8.4
Q ss_pred HHHHHHhhCChhhHHHHHHH
Q 038748 141 VFSSYVVADRVKDAITTFDV 160 (482)
Q Consensus 141 li~~~~~~~~~~~a~~~~~~ 160 (482)
+..++.+.|++++|..+++.
T Consensus 31 la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 31 LAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp HHHHHHHTTHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHHH
Confidence 34444444444444444433
No 167
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.66 E-value=0.0018 Score=52.60 Aligned_cols=63 Identities=10% Similarity=-0.110 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038748 314 HMYNMMISLYCYSNETGAAMKLLDEMVYNGAFP--DIQTYNILFEFLVKGRKLWEASGLFNEMVK 376 (482)
Q Consensus 314 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 376 (482)
..|..+...+...|++++|+..|+........+ ...++..+...+...|++++|...++....
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334444445555555555555555554432111 112444455555555555555555555554
No 168
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.64 E-value=0.06 Score=52.24 Aligned_cols=323 Identities=11% Similarity=0.053 Sum_probs=176.4
Q ss_pred CCCCCHhhHH-----HHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCCh--hhHHHHHHHHHhcCCCC
Q 038748 96 NDKHSPYAWN-----LVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRV--KDAITTFDVMEQYGCKH 168 (482)
Q Consensus 96 ~~~~~~~~~~-----~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~--~~a~~~~~~~~~~~~~~ 168 (482)
|.+.+..-|. .+|+-+...+.+..|+++-..+...-......|......+.+..+. +++++..++=..... .
T Consensus 427 gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~-~ 505 (829)
T KOG2280|consen 427 GIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL-T 505 (829)
T ss_pred CccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC-C
Confidence 4455544444 4567777788888888887777655433456666666666666422 222222222222112 2
Q ss_pred CHhhHHHHHHHHHhcCChHhHHHHHHHhhC-C----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhc---------
Q 038748 169 DVFALNSLLSAICRDGKTIDAWQFLRVVDG-R----IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEV--------- 234 (482)
Q Consensus 169 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------- 234 (482)
....|..+..-....|+.+.|..+++.=.. + .-.+..-+...+.-+.+.|+.+-...++-++..+.
T Consensus 506 ~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l 585 (829)
T KOG2280|consen 506 PGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTL 585 (829)
T ss_pred CceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777788999998887764221 1 11233445666777778888888777776665431
Q ss_pred CCCCCChhhHHHHHH--------HHHccCCChHHHHHHHHHHH------HcCCCCCHHHHHHHHHHHHhcCCh-------
Q 038748 235 GWDPDNVPAYDSYLI--------TLLKGCDGIYETVNSLKRMM------ERGCNPGMTFFKLAFEECLTGQNL------- 293 (482)
Q Consensus 235 ~~~p~~~~~~~~l~~--------~~~~~~~~~~~a~~~~~~m~------~~~~~~~~~~~~~li~~~~~~g~~------- 293 (482)
...|.....|.-+++ .+... ++...++.-|..-. ..|..|+ ......+|.+....
T Consensus 586 ~~~p~a~~lY~~~~r~~~~~~l~d~y~q-~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e~ka~ 661 (829)
T KOG2280|consen 586 RNQPLALSLYRQFMRHQDRATLYDFYNQ-DDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFEAKAL 661 (829)
T ss_pred HhchhhhHHHHHHHHhhchhhhhhhhhc-ccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhHHHHH
Confidence 112322223322222 11111 22222221111000 0122222 22233344433321
Q ss_pred ---hHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 038748 294 ---RGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGL 370 (482)
Q Consensus 294 ---~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~ 370 (482)
.+-.++.+.+..+.|..-...+.+--+.-+...|+..+|.++-.+.. -||...|..-+.+++..+++++-+++
T Consensus 662 ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekf 737 (829)
T KOG2280|consen 662 EDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKF 737 (829)
T ss_pred HHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHH
Confidence 12223333333333433333344444555666778888877766654 36888888888888888888776666
Q ss_pred HHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 038748 371 FNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAK 442 (482)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 442 (482)
-+... .+.-|.-++.+|.+.|+.++|.+++-+... . .-...+|.+.|++.+|.++.-
T Consensus 738 Akskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~-----l----~ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 738 AKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGG-----L----QEKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred HhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCC-----h----HHHHHHHHHhccHHHHHHHHH
Confidence 55442 245567778888888888888887755321 1 145677888888888776543
No 169
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.63 E-value=0.0021 Score=52.55 Aligned_cols=115 Identities=17% Similarity=0.172 Sum_probs=74.5
Q ss_pred HHHHHHHhhcccCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 038748 296 AEFIWGAMVGRIGFRPDTHMYNMMISLYCYS-----NETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGL 370 (482)
Q Consensus 296 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~ 370 (482)
-...|+... +-..+..+|..+++.|.+. |.++=....+..|.+-|+.-|..+|+.|++.+=+ |.+- -..+
T Consensus 33 ~~~~f~~~~---~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~ 107 (228)
T PF06239_consen 33 HEELFERAP---GQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNF 107 (228)
T ss_pred hHHHHHHHh---hccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccH
Confidence 345555542 2356777888888888753 6677777777888888888888888888877654 3321 1112
Q ss_pred HHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 038748 371 FNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMH 432 (482)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 432 (482)
|+.+-- -.-.+-+-|++++++|...|+-||..++..++..+++.+
T Consensus 108 fQ~~F~-----------------hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 108 FQAEFM-----------------HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHhc-----------------cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 221111 011245567888888888888888888888888885544
No 170
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.60 E-value=0.0015 Score=50.84 Aligned_cols=86 Identities=14% Similarity=0.055 Sum_probs=40.8
Q ss_pred HHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChH
Q 038748 180 ICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIY 259 (482)
Q Consensus 180 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~ 259 (482)
+...|++++|..+|+.+..-.+-+..-|-.|.-++...|++++|+..|.... .+.|++...+-.+..+++.. |+.+
T Consensus 45 ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~---~L~~ddp~~~~~ag~c~L~l-G~~~ 120 (157)
T PRK15363 45 LMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAA---QIKIDAPQAPWAAAECYLAC-DNVC 120 (157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHH---hcCCCCchHHHHHHHHHHHc-CCHH
Confidence 3344555555555544433333344444444445555555555555554443 23444444444455555555 5555
Q ss_pred HHHHHHHHHH
Q 038748 260 ETVNSLKRMM 269 (482)
Q Consensus 260 ~a~~~~~~m~ 269 (482)
.|.+.|+..+
T Consensus 121 ~A~~aF~~Ai 130 (157)
T PRK15363 121 YAIKALKAVV 130 (157)
T ss_pred HHHHHHHHHH
Confidence 5555544433
No 171
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.55 E-value=0.0063 Score=49.65 Aligned_cols=87 Identities=8% Similarity=-0.026 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHH
Q 038748 314 HMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPD--IQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVR 391 (482)
Q Consensus 314 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 391 (482)
..+..+...+...|++++|...|++..+.+..+. ...+..+...+.+.|++++|...+++..+.... +...+..+..
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 114 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHH
Confidence 3445555555566666666666666554322221 234555555566666666666666666554322 3334444555
Q ss_pred HHhcCCChHH
Q 038748 392 VYMDSDDPYV 401 (482)
Q Consensus 392 ~~~~~~~~~~ 401 (482)
+|...|+...
T Consensus 115 ~~~~~g~~~~ 124 (172)
T PRK02603 115 IYHKRGEKAE 124 (172)
T ss_pred HHHHcCChHh
Confidence 5555555433
No 172
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.54 E-value=0.0022 Score=59.03 Aligned_cols=96 Identities=11% Similarity=-0.029 Sum_probs=62.6
Q ss_pred HHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHH
Q 038748 142 FSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVA 221 (482)
Q Consensus 142 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 221 (482)
...+...|++++|++.|++.++... -+...|..+..+|...|++++|+..++......+.+...|..+..+|...|+++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHH
Confidence 4445566777777777777776543 245566666677777777777777777655544556666777777777777777
Q ss_pred HHHHHHHHhHHhcCCCCCCh
Q 038748 222 NAKKTFGEMVIEVGWDPDNV 241 (482)
Q Consensus 222 ~a~~~~~~~~~~~~~~p~~~ 241 (482)
+|...|++.. .+.|++.
T Consensus 88 eA~~~~~~al---~l~P~~~ 104 (356)
T PLN03088 88 TAKAALEKGA---SLAPGDS 104 (356)
T ss_pred HHHHHHHHHH---HhCCCCH
Confidence 7777777665 3355443
No 173
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.53 E-value=0.095 Score=50.92 Aligned_cols=319 Identities=11% Similarity=0.029 Sum_probs=190.8
Q ss_pred hcCCCCCHHHHHHH-----HH--hhcCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCC---cHHHHHHHHHHHh
Q 038748 60 KTLIRVSQETVEQV-----LK--FSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCL---FDAMWDAIKSMKK 129 (482)
Q Consensus 60 ~~~~~~~~~~~~~l-----l~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~ 129 (482)
+-|++++-..|..+ +. .+.+.+..|.++-.|+... -.. ....|......+.+..+ -+.+..+-+++..
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p-~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~ 502 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLP-ESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSA 502 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCc-ccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhcc
Confidence 45777777766543 22 4467888999999998762 112 25666666666666532 2223333333333
Q ss_pred cCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCC----CCHhhHHHHHHHHHhcCChHhHHHHHHHhhC-------
Q 038748 130 ENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCK----HDVFALNSLLSAICRDGKTIDAWQFLRVVDG------- 198 (482)
Q Consensus 130 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~------- 198 (482)
. ......|..+.+.....|+++.|..+++.=...+.+ .+..-+...+.-+.+.|+.+....++-.+..
T Consensus 503 ~-~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l 581 (829)
T KOG2280|consen 503 K-LTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSL 581 (829)
T ss_pred c-CCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHH
Confidence 2 234456888888888899999999988754332211 1223455667777888888887776655432
Q ss_pred -----CCCCCHHHHHHHHH--------HHHhcCCHHHHHHHHH--HhHH---hcCCCCCChhhHHHHHHHHHccCCC---
Q 038748 199 -----RIKPDNDTYAILLE--------GWEKERDVANAKKTFG--EMVI---EVGWDPDNVPAYDSYLITLLKGCDG--- 257 (482)
Q Consensus 199 -----~~~~~~~~~~~l~~--------~~~~~~~~~~a~~~~~--~~~~---~~~~~p~~~~~~~~l~~~~~~~~~~--- 257 (482)
..+.....|.-+++ .+.+.++-..+..-|. .... ..+..|+ .......+.+. ..
T Consensus 582 ~~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~----lk~~a~~~a~s-k~~s~ 656 (829)
T KOG2280|consen 582 FMTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPA----LKTAANAFAKS-KEKSF 656 (829)
T ss_pred HHHHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchh----HHHHHHHHhhh-hhhhh
Confidence 12222333333332 1122222222222221 1000 0133332 22233333333 22
Q ss_pred -------hHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCH
Q 038748 258 -------IYETVNSLKRMME-RGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNET 329 (482)
Q Consensus 258 -------~~~a~~~~~~m~~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 329 (482)
..+-+++.+.+.. .|..-...+.+--+.-+...|+..+|.++-.+.. -||-..|-.-+.+++..++|
T Consensus 657 e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kw 731 (829)
T KOG2280|consen 657 EAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKW 731 (829)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhH
Confidence 1111222222222 2334445556667778888999999999988774 68888888889999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHH
Q 038748 330 GAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFW 406 (482)
Q Consensus 330 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 406 (482)
++-+++-+.+. .+..|..++.+|.+.|+.++|.+++.+... . .-...+|.+.|++.+|.++-
T Consensus 732 eeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~-----l----~ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 732 EELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGG-----L----QEKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred HHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCC-----h----HHHHHHHHHhccHHHHHHHH
Confidence 88766554432 357788999999999999999999876532 1 15778899999999888754
No 174
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.52 E-value=0.0036 Score=57.64 Aligned_cols=89 Identities=9% Similarity=-0.125 Sum_probs=59.5
Q ss_pred HHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHh
Q 038748 109 DLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTID 188 (482)
Q Consensus 109 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 188 (482)
..+...|+++.|++.|++..+.++.+...|..+..+|...|++++|+..++...+... .+...|..+..+|...|++++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDP-SLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhCCHHH
Confidence 3444566777777777777776666666677777777777777777777777766532 245566666667777777777
Q ss_pred HHHHHHHhhC
Q 038748 189 AWQFLRVVDG 198 (482)
Q Consensus 189 a~~~~~~~~~ 198 (482)
|...|+....
T Consensus 89 A~~~~~~al~ 98 (356)
T PLN03088 89 AKAALEKGAS 98 (356)
T ss_pred HHHHHHHHHH
Confidence 7777766544
No 175
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.51 E-value=0.0004 Score=46.49 Aligned_cols=62 Identities=10% Similarity=0.039 Sum_probs=42.2
Q ss_pred hhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHH
Q 038748 112 GKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNS 175 (482)
Q Consensus 112 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 175 (482)
...|++++|+++|+.+....+.+...+..+..+|.+.|++++|.++++.+.... |+...|..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~--~~~~~~~~ 63 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD--PDNPEYQQ 63 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG--TTHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCHHHHHH
Confidence 356777777777777777777677777777777777777777777777776653 44333333
No 176
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.49 E-value=0.011 Score=48.23 Aligned_cols=84 Identities=7% Similarity=0.028 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCC--HhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHH
Q 038748 136 ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHD--VFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEG 213 (482)
Q Consensus 136 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 213 (482)
..+..+...+...|++++|...|++..+.+..+. ...+..+..++.+.|++++|...+++.....+.+...+..+..+
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 115 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 3344444445555555555555555544321111 23444455555555555555555555433223334444444444
Q ss_pred HHhcCC
Q 038748 214 WEKERD 219 (482)
Q Consensus 214 ~~~~~~ 219 (482)
+...|+
T Consensus 116 ~~~~g~ 121 (172)
T PRK02603 116 YHKRGE 121 (172)
T ss_pred HHHcCC
Confidence 444444
No 177
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.49 E-value=0.076 Score=48.43 Aligned_cols=379 Identities=11% Similarity=0.069 Sum_probs=219.7
Q ss_pred hHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhc
Q 038748 85 VKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQY 164 (482)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 164 (482)
+++-+.++ ..+.|..+|-.||.-+...+..++..+++++|....+.-..+|..-+.+=...+++.....+|.+....
T Consensus 29 lrLRerIk---dNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k 105 (660)
T COG5107 29 LRLRERIK---DNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKK 105 (660)
T ss_pred HHHHHHhh---cCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhh
Confidence 34444443 456788999999999999999999999999999887767788999898888889999999999999886
Q ss_pred CCCCCHhhHHHHHHHHHhcCChH------hHHHHHHHhhC--CCCC-CHHHHHHHHHHH---HhcCCHH------HHHHH
Q 038748 165 GCKHDVFALNSLLSAICRDGKTI------DAWQFLRVVDG--RIKP-DNDTYAILLEGW---EKERDVA------NAKKT 226 (482)
Q Consensus 165 ~~~~~~~~~~~ll~~~~~~g~~~------~a~~~~~~~~~--~~~~-~~~~~~~l~~~~---~~~~~~~------~a~~~ 226 (482)
.+ +...|..-+.-.-+.+..- ...+.|+-... ++.| ....|+..+... -..|.|+ .....
T Consensus 106 ~l--~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~ 183 (660)
T COG5107 106 SL--NLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNG 183 (660)
T ss_pred hc--cHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence 54 4666766666444433211 11223333222 3333 334455544433 3345444 44555
Q ss_pred HHHhHHhcCCCCC-Ch-------hhHHHHHHHHHcc------CCChHHHHHHHHHHHH--cCCCC----CHHH-------
Q 038748 227 FGEMVIEVGWDPD-NV-------PAYDSYLITLLKG------CDGIYETVNSLKRMME--RGCNP----GMTF------- 279 (482)
Q Consensus 227 ~~~~~~~~~~~p~-~~-------~~~~~l~~~~~~~------~~~~~~a~~~~~~m~~--~~~~~----~~~~------- 279 (482)
+.++.. .|- +. ..|..-++..... .--+-.|.+.++++.. .|+.. +..+
T Consensus 184 Y~ral~----tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~ 259 (660)
T COG5107 184 YMRALQ----TPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAART 259 (660)
T ss_pred HHHHHc----CccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhcccccc
Confidence 666543 221 11 0111111111100 0112333444444322 12111 1111
Q ss_pred -------------------------------HHHHH--------------HHHHhcCChhHHHHHHHHhhcccCCCCCHH
Q 038748 280 -------------------------------FKLAF--------------EECLTGQNLRGAEFIWGAMVGRIGFRPDTH 314 (482)
Q Consensus 280 -------------------------------~~~li--------------~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 314 (482)
|+..+ ..+...++-+.|.+....-. ...|+..
T Consensus 260 s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~---~~spsL~ 336 (660)
T COG5107 260 SDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGI---EMSPSLT 336 (660)
T ss_pred ccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcc---cCCCchh
Confidence 11111 11123344455555544332 1123311
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH--------------CCC---------------CCCHhhHHHHHHHHHhcCCHH
Q 038748 315 MYNMMISLYCYSNETGAAMKLLDEMVY--------------NGA---------------FPDIQTYNILFEFLVKGRKLW 365 (482)
Q Consensus 315 ~~~~li~~~~~~~~~~~a~~~~~~m~~--------------~g~---------------~p~~~~~~~ll~~~~~~g~~~ 365 (482)
. .+-..|.-.++.+.+...|++..+ .+. .--...|...+.+-.+..-++
T Consensus 337 ~--~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~ 414 (660)
T COG5107 337 M--FLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLE 414 (660)
T ss_pred e--eHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHH
Confidence 1 111222223333333333332211 011 012345667777777777889
Q ss_pred HHHHHHHHHHhCC-CccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhH-HHHHHHHHhcCChhHHHHHHHH
Q 038748 366 EASGLFNEMVKNE-NVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETG-NLLVAGLCDMHMLPEAVKYAKG 443 (482)
Q Consensus 366 ~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~ 443 (482)
.|..+|.++.+.+ +.++...++++|..++ .|+...|.++|+.-... .||...| +-.+.-+...++-+.|..+|+.
T Consensus 415 aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~naraLFet 491 (660)
T COG5107 415 AARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRINDEENARALFET 491 (660)
T ss_pred HHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 9999999999988 6678888899998776 57888899999876653 3555444 5556667788999999999996
Q ss_pred HHHcCCCCC--HHHHHHHHHHHHHhccHHHHHHHHHHHhh
Q 038748 444 MAEKGIQVT--PFALSKLKQILIKARKEAVYEELLKKCKA 481 (482)
Q Consensus 444 m~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 481 (482)
..+. +.-+ ..+|..++..=..-|+...+..+-++|.+
T Consensus 492 sv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 492 SVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred hHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 5443 1222 46888999888888998888877777654
No 178
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.48 E-value=0.01 Score=46.24 Aligned_cols=97 Identities=11% Similarity=-0.046 Sum_probs=64.3
Q ss_pred HHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 038748 138 FASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKE 217 (482)
Q Consensus 138 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 217 (482)
.-.+...+...|++++|..+|+.+....+ -+..-|-.|..++-..|++++|+..|...-.-.+.|...+-.+..++...
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp-~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYDA-WSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHc
Confidence 34445555667777777777777766543 24445566666677777777777777775443456677777777777777
Q ss_pred CCHHHHHHHHHHhHHhcC
Q 038748 218 RDVANAKKTFGEMVIEVG 235 (482)
Q Consensus 218 ~~~~~a~~~~~~~~~~~~ 235 (482)
|+.+.|.+.|+......+
T Consensus 117 G~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 117 DNVCYAIKALKAVVRICG 134 (157)
T ss_pred CCHHHHHHHHHHHHHHhc
Confidence 777777777777665433
No 179
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.45 E-value=0.077 Score=47.47 Aligned_cols=316 Identities=11% Similarity=0.025 Sum_probs=192.5
Q ss_pred hhcCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHh--hCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHH--HhhCCh
Q 038748 76 FSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLG--KNCLFDAMWDAIKSMKKENVLSLATFASVFSSY--VVADRV 151 (482)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~--~~~~~~ 151 (482)
.....+..+...|...+.. ..|..|-.++. ..|+-..|.++-.+..+.-..+...+..++.+- .-.|++
T Consensus 64 ~iw~sP~t~~Ryfr~rKRd-------rgyqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~ 136 (531)
T COG3898 64 SIWESPYTARRYFRERKRD-------RGYQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDY 136 (531)
T ss_pred HHHhCcHHHHHHHHHHHhh-------hHHHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCch
Confidence 4467888888888876664 34555555544 356777777776655433223444444444433 345999
Q ss_pred hhHHHHHHHHHhcCCCCCHhh--HHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038748 152 KDAITTFDVMEQYGCKHDVFA--LNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGE 229 (482)
Q Consensus 152 ~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 229 (482)
+.|.+-|+.|... |.... ...|.-..-+.|+.+.|..+-+..-..-+.-...+...+...+..|+|+.|+++++.
T Consensus 137 ~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~ 213 (531)
T COG3898 137 EDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDA 213 (531)
T ss_pred HHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHH
Confidence 9999999999862 33222 223333344678888888887776655555677888899999999999999999988
Q ss_pred hHHhcCCCCCChhhH-HHHHHHHH--ccCCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHhhc
Q 038748 230 MVIEVGWDPDNVPAY-DSYLITLL--KGCDGIYETVNSLKRMMERGCNPGMT-FFKLAFEECLTGQNLRGAEFIWGAMVG 305 (482)
Q Consensus 230 ~~~~~~~~p~~~~~~-~~l~~~~~--~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~ 305 (482)
-....-+.++-..-- ..|+.+-. ....+...|...-.+..+ +.||-. .-.....++.+.|++.++-.+++.+-
T Consensus 214 ~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aW- 290 (531)
T COG3898 214 QRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAW- 290 (531)
T ss_pred HHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHH-
Confidence 765544555322111 11221111 111355566655554444 445432 22344577888999999999999886
Q ss_pred ccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCh
Q 038748 306 RIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYN-GAFP-DIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNH 383 (482)
Q Consensus 306 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 383 (482)
+. .|....+.. ..+.+.|+.. +.-++..... .++| +...-..+..+....|++..|..--+.... ..|..
T Consensus 291 K~--ePHP~ia~l--Y~~ar~gdta--~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pre 362 (531)
T COG3898 291 KA--EPHPDIALL--YVRARSGDTA--LDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRE 362 (531)
T ss_pred hc--CCChHHHHH--HHHhcCCCcH--HHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchh
Confidence 33 454444332 3345556532 2222222110 1233 345566667777788888887776666554 46777
Q ss_pred hhHHHHHHHHh-cCCChHHHHHHHHHHHHc
Q 038748 384 ENCRAAVRVYM-DSDDPYVAIKFWKYMIEN 412 (482)
Q Consensus 384 ~~~~~li~~~~-~~~~~~~a~~~~~~m~~~ 412 (482)
..|..|.+.-. ..|+-.++...+.+..+.
T Consensus 363 s~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 363 SAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred hHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 77777776654 448888888888777654
No 180
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.44 E-value=0.0029 Score=51.41 Aligned_cols=96 Identities=11% Similarity=-0.083 Sum_probs=71.2
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcc--ChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHH
Q 038748 348 IQTYNILFEFLVKGRKLWEASGLFNEMVKNENVL--NHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLV 425 (482)
Q Consensus 348 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li 425 (482)
...|..+...+...|++++|...|+........+ ...++..+..+|...|++++|.+.++...... +....++..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 4556667777888999999999999998764332 23478888899999999999999999988742 22235566666
Q ss_pred HHHH-------hcCChhHHHHHHHHH
Q 038748 426 AGLC-------DMHMLPEAVKYAKGM 444 (482)
Q Consensus 426 ~~~~-------~~g~~~~A~~~~~~m 444 (482)
..+. ..|++++|...+++.
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 6666 778888776666654
No 181
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.42 E-value=0.014 Score=56.29 Aligned_cols=146 Identities=10% Similarity=0.072 Sum_probs=74.0
Q ss_pred CCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcC
Q 038748 198 GRIKPDNDTYAILLEGWEKE-----RDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERG 272 (482)
Q Consensus 198 ~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~ 272 (482)
...+.|...|...+++.... ++.+.|..+|++.. ...|+...++..+..++... ..+.
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai---~ldP~~a~a~A~la~~~~~~-~~~~------------- 393 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEIL---KSEPDFTYAQAEKALADIVR-HSQQ------------- 393 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH---HhCCCcHHHHHHHHHHHHHH-HhcC-------------
Confidence 34567778888888875542 23668888888887 44887766666654444332 1111
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHH
Q 038748 273 CNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYN 352 (482)
Q Consensus 273 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 352 (482)
+.. ..++..+.+.............+...|.++.-.+...|++++|...+++..+.+ |+...|.
T Consensus 394 --~~~------------~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~ 457 (517)
T PRK10153 394 --PLD------------EKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYV 457 (517)
T ss_pred --Ccc------------HHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHH
Confidence 000 001112222222211110112233444444444444556666666666555542 4555555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh
Q 038748 353 ILFEFLVKGRKLWEASGLFNEMVK 376 (482)
Q Consensus 353 ~ll~~~~~~g~~~~a~~~~~~~~~ 376 (482)
.+...+...|+.++|.+.+++...
T Consensus 458 ~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 458 LLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Confidence 555555556666666666655554
No 182
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.41 E-value=0.098 Score=47.84 Aligned_cols=195 Identities=15% Similarity=0.102 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHH-------HHHHHHHh----cCCHHHHHHHHHHHHHCCCCC
Q 038748 278 TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYN-------MMISLYCY----SNETGAAMKLLDEMVYNGAFP 346 (482)
Q Consensus 278 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-------~li~~~~~----~~~~~~a~~~~~~m~~~g~~p 346 (482)
.+|..++....+.++...|.+.+.-+. -+.|+...-. .+-+..+. .-+..+-+.+|+......+.
T Consensus 299 ~~F~~~Ls~~Vk~~~T~~a~q~l~lL~---~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiD- 374 (549)
T PF07079_consen 299 DRFGNLLSFKVKQVQTEEAKQYLALLK---ILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDID- 374 (549)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHH---hcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccc-
Confidence 456666666777777777777766553 2233332111 11122221 11122334445444443222
Q ss_pred CHhhHHHHHHH---HHhcCC-HHHHHHHHHHHHhCCCccChhhHHH----HHHHHhc---CCChHHHHHHHHHHHHcCCC
Q 038748 347 DIQTYNILFEF---LVKGRK-LWEASGLFNEMVKNENVLNHENCRA----AVRVYMD---SDDPYVAIKFWKYMIENHCS 415 (482)
Q Consensus 347 ~~~~~~~ll~~---~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~----li~~~~~---~~~~~~a~~~~~~m~~~~~~ 415 (482)
.......++.+ +-+.|. -++|..+++.+.+-.. -|...-|. +=.+|.. ...+..-.++-+-+.+.|++
T Consensus 375 rqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~-yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~ 453 (549)
T PF07079_consen 375 RQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTN-YDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLT 453 (549)
T ss_pred HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCC
Confidence 11222333333 233444 7788888888876321 12222222 2223322 23344444555555577876
Q ss_pred CCh----hhHHHHHHH--HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 038748 416 DLS----ETGNLLVAG--LCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKC 479 (482)
Q Consensus 416 p~~----~~~~~li~~--~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 479 (482)
|-. ..-|.|..+ +...|++.++.-.-.-..+ +.|++.+|..+.-++....++++|.+++.++
T Consensus 454 ~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 454 PITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred cccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 643 344555544 4567888888776665553 5689999999888999999999999988764
No 183
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.40 E-value=0.047 Score=45.88 Aligned_cols=54 Identities=17% Similarity=0.149 Sum_probs=19.8
Q ss_pred HhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHH
Q 038748 215 EKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMM 269 (482)
Q Consensus 215 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~ 269 (482)
...|++++|...|+.+.....-.|-...+.-.++.++.+. |++++|...++...
T Consensus 16 ~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~-~~y~~A~~~~~~fi 69 (203)
T PF13525_consen 16 LQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQ-GDYEEAIAAYERFI 69 (203)
T ss_dssp HHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHT-T-HHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHH
Confidence 3444444444444444433222221222333333444444 44444444444433
No 184
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.39 E-value=0.0013 Score=43.53 Aligned_cols=54 Identities=9% Similarity=0.052 Sum_probs=28.6
Q ss_pred HHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 038748 178 SAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMV 231 (482)
Q Consensus 178 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 231 (482)
..+...|++++|...|+.+....+-+...+..+..++...|++++|..+|+++.
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344555555555555555544444455555555555555555555555555554
No 185
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.38 E-value=0.032 Score=49.68 Aligned_cols=92 Identities=11% Similarity=0.015 Sum_probs=39.9
Q ss_pred HHHHhc-CCHHHHHHHHHHhHHhc---CCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCC-----CHH-HHH
Q 038748 212 EGWEKE-RDVANAKKTFGEMVIEV---GWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNP-----GMT-FFK 281 (482)
Q Consensus 212 ~~~~~~-~~~~~a~~~~~~~~~~~---~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~-----~~~-~~~ 281 (482)
..|-.. |+++.|.+.|++...-. +-.-.....+..+...+... |++++|.++|++........ +.. .|.
T Consensus 122 ~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l-~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l 200 (282)
T PF14938_consen 122 EIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARL-GRYEEAIEIYEEVAKKCLENNLLKYSAKEYFL 200 (282)
T ss_dssp HHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-T-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHhhcccccchhHHHHHH
Confidence 444444 56666666666554311 10000112334444555555 66666666666655432111 111 122
Q ss_pred HHHHHHHhcCChhHHHHHHHHhh
Q 038748 282 LAFEECLTGQNLRGAEFIWGAMV 304 (482)
Q Consensus 282 ~li~~~~~~g~~~~a~~~~~~~~ 304 (482)
..+-++...|+...|.+.+++..
T Consensus 201 ~a~l~~L~~~D~v~A~~~~~~~~ 223 (282)
T PF14938_consen 201 KAILCHLAMGDYVAARKALERYC 223 (282)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHG
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Confidence 22334444566666666666553
No 186
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.05 Score=48.99 Aligned_cols=298 Identities=11% Similarity=-0.021 Sum_probs=169.7
Q ss_pred HHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 038748 138 FASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKE 217 (482)
Q Consensus 138 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 217 (482)
....-..+.+..++..|+..+...++..+. +..-|..-...+...|+++++.--.+.-.+--......+.-.-+++...
T Consensus 52 ~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~ 130 (486)
T KOG0550|consen 52 AKEEGNAFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLAL 130 (486)
T ss_pred HHhhcchHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhh
Confidence 444567778888889999999888887543 4556666677777777887776544332221122233444555555555
Q ss_pred CCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCC-CCCHHHHHHH-HHHHHhcCChhH
Q 038748 218 RDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGC-NPGMTFFKLA-FEECLTGQNLRG 295 (482)
Q Consensus 218 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~l-i~~~~~~g~~~~ 295 (482)
++..+|...++.- ..+ ....++..++....... +|...++..+ ..++...|++++
T Consensus 131 ~~~i~A~~~~~~~-----------~~~------------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~ 187 (486)
T KOG0550|consen 131 SDLIEAEEKLKSK-----------QAY------------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDE 187 (486)
T ss_pred HHHHHHHHHhhhh-----------hhh------------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchh
Confidence 5555555555411 111 11122222222222211 2333444333 234556788888
Q ss_pred HHHHHHHhhcccCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHH-------------HHHHHh
Q 038748 296 AEFIWGAMVGRIGFRPDTHMYNMMISL--YCYSNETGAAMKLLDEMVYNGAFPDIQTYNIL-------------FEFLVK 360 (482)
Q Consensus 296 a~~~~~~~~~~~~~~~~~~~~~~li~~--~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l-------------l~~~~~ 360 (482)
|.++-..+.+... ...+...+++ +...++.+.|...|++.... .|+...-..+ ..-..+
T Consensus 188 a~~ea~~ilkld~----~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~k~~gN~~fk 261 (486)
T KOG0550|consen 188 AQSEAIDILKLDA----TNAEALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVKKERGNDAFK 261 (486)
T ss_pred HHHHHHHHHhccc----chhHHHHhcccccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHHHhhhhhHhh
Confidence 8887777753221 1223333332 33456778888888777664 3443221111 122467
Q ss_pred cCCHHHHHHHHHHHHhC---CCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCChhH
Q 038748 361 GRKLWEASGLFNEMVKN---ENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLS-ETGNLLVAGLCDMHMLPE 436 (482)
Q Consensus 361 ~g~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~ 436 (482)
.|++..|.+.|.+.+.. +..++...|........+.|+..+|+.-.++..+.+ +.. ..|-.-..++...++|++
T Consensus 262 ~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD--~syikall~ra~c~l~le~~e~ 339 (486)
T KOG0550|consen 262 NGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID--SSYIKALLRRANCHLALEKWEE 339 (486)
T ss_pred ccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC--HHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999988765 345666777777778888999999998888877632 221 222222344556688899
Q ss_pred HHHHHHHHHHcCCCC-CHHHHHHHHHHHHHhc
Q 038748 437 AVKYAKGMAEKGIQV-TPFALSKLKQILIKAR 467 (482)
Q Consensus 437 A~~~~~~m~~~~~~~-~~~~~~~l~~~~~~~g 467 (482)
|.+-|+...+..-.+ ...++.....++-+..
T Consensus 340 AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSk 371 (486)
T KOG0550|consen 340 AVEDYEKAMQLEKDCEIRRTLREAQLALKKSK 371 (486)
T ss_pred HHHHHHHHHhhccccchHHHHHHHHHHHHHhh
Confidence 998888876543222 2344444444554433
No 187
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.35 E-value=0.0034 Score=53.77 Aligned_cols=94 Identities=13% Similarity=0.077 Sum_probs=70.9
Q ss_pred HHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 038748 144 SYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANA 223 (482)
Q Consensus 144 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 223 (482)
-+.+.++|++|+..|.+.++... -|.+.|..-..+|++.|.++.|++-.+....-.+-...+|..|-.+|...|++++|
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P-~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDP-TNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCC-CcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 35567888888888888888643 36677777888888888888888766665444455567888888888888888888
Q ss_pred HHHHHHhHHhcCCCCCCh
Q 038748 224 KKTFGEMVIEVGWDPDNV 241 (482)
Q Consensus 224 ~~~~~~~~~~~~~~p~~~ 241 (482)
++.|++.+ .+.|++.
T Consensus 169 ~~aykKaL---eldP~Ne 183 (304)
T KOG0553|consen 169 IEAYKKAL---ELDPDNE 183 (304)
T ss_pred HHHHHhhh---ccCCCcH
Confidence 88888775 6688655
No 188
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.34 E-value=0.004 Score=53.40 Aligned_cols=100 Identities=11% Similarity=-0.035 Sum_probs=72.2
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHH
Q 038748 323 YCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVA 402 (482)
Q Consensus 323 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 402 (482)
+.+.+++++|+..|.+.++... -|.+.|..-..+|.+.|.++.|.+=.+..+..+.. ...+|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P-~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDP-TNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCC-CcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHHH
Confidence 4567888888888888887532 25566677777888888888888877777764433 345788888888888888888
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHH
Q 038748 403 IKFWKYMIENHCSDLSETGNLLVA 426 (482)
Q Consensus 403 ~~~~~~m~~~~~~p~~~~~~~li~ 426 (482)
.+.|+..++ +.|+..+|-.=+.
T Consensus 169 ~~aykKaLe--ldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 169 IEAYKKALE--LDPDNESYKSNLK 190 (304)
T ss_pred HHHHHhhhc--cCCCcHHHHHHHH
Confidence 888888776 5677766644443
No 189
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.30 E-value=0.017 Score=43.26 Aligned_cols=54 Identities=6% Similarity=-0.042 Sum_probs=25.0
Q ss_pred HHhhCCCcHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHhhCChhhHHHHHHHHHh
Q 038748 110 LLGKNCLFDAMWDAIKSMKKENVLS---LATFASVFSSYVVADRVKDAITTFDVMEQ 163 (482)
Q Consensus 110 ~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 163 (482)
++-..|+.++|+.+|++....|... ...+-.+...+...|++++|..+|+....
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344455555555555555544322 22333444444444555555555554443
No 190
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.29 E-value=0.019 Score=55.50 Aligned_cols=135 Identities=8% Similarity=-0.053 Sum_probs=69.6
Q ss_pred cCCCCHHHHHHHHHHHHhh-----CChhhHHHHHHHHHhcCCCCC-HhhHHHHHHHHHhc--------CChHhHHHHHHH
Q 038748 130 ENVLSLATFASVFSSYVVA-----DRVKDAITTFDVMEQYGCKHD-VFALNSLLSAICRD--------GKTIDAWQFLRV 195 (482)
Q Consensus 130 ~~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~--------g~~~~a~~~~~~ 195 (482)
..+.+..+|...+++.... +....|..+|++..+.. |+ ...|..+..++... .++..+.+....
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld--P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE--PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 3344556666666554332 22456666666666542 33 23333332222211 112223333332
Q ss_pred hhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHc
Q 038748 196 VDG--RIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMER 271 (482)
Q Consensus 196 ~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~ 271 (482)
... ....+..+|..+.-.+...|++++|...+++.. .+.| +..+|..+...+... |+.++|.+.+++....
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl---~L~p-s~~a~~~lG~~~~~~-G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAI---DLEM-SWLNYVLLGKVYELK-GDNRLAADAYSTAFNL 482 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHH---HcCC-CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhc
Confidence 111 233444566666555555677777777777765 3345 456666666666666 7777777777766653
No 191
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.27 E-value=0.061 Score=42.88 Aligned_cols=132 Identities=9% Similarity=-0.054 Sum_probs=85.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-ccChhhH
Q 038748 308 GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNEN-VLNHENC 386 (482)
Q Consensus 308 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~ 386 (482)
...|++..-..|..+..+.|+..+|...|.+...--..-|....-.+.++....+++..|...++++.+.+. .-++.+.
T Consensus 84 ~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 84 AIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 345666666677777788888888888887776543445666666777777777888888888877776531 1123345
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 038748 387 RAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYA 441 (482)
Q Consensus 387 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 441 (482)
..+.+.|...|.+.+|..-|+.....- |+...-......+.++|+.+++..-+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~y--pg~~ar~~Y~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYY--PGPQARIYYAEMLAKQGRLREANAQY 216 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhC--CCHHHHHHHHHHHHHhcchhHHHHHH
Confidence 566777777888888888887777643 44333233334456667666554433
No 192
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.27 E-value=0.0014 Score=43.35 Aligned_cols=57 Identities=11% Similarity=0.062 Sum_probs=41.0
Q ss_pred HHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhc
Q 038748 108 VDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQY 164 (482)
Q Consensus 108 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 164 (482)
...+...|++++|.+.|+++.+..+.+...+..+..++...|++++|...|+.+.+.
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 455667777777777777777777667777777777777777777777777777654
No 193
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.23 E-value=0.009 Score=53.47 Aligned_cols=268 Identities=12% Similarity=-0.028 Sum_probs=162.3
Q ss_pred HHHhhCCCcHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHhhCChhhHHHHHHHH--Hh--cCCC-CCHhhHHHHHHH
Q 038748 109 DLLGKNCLFDAMWDAIKSMKKENVLS----LATFASVFSSYVVADRVKDAITTFDVM--EQ--YGCK-HDVFALNSLLSA 179 (482)
Q Consensus 109 ~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~--~~--~~~~-~~~~~~~~ll~~ 179 (482)
.-+++.|+...-+.+|+...+-|..+ ..+|..|..+|.-.+++++|++....= .. .|-+ -.......|-+.
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 46889999999999999999988643 456777788888889999998865321 11 1111 112233334445
Q ss_pred HHhcCChHhHHHHHHH-hh---C-C-CCCCHHHHHHHHHHHHhcCC--------------------HHHHHHHHHHhHH-
Q 038748 180 ICRDGKTIDAWQFLRV-VD---G-R-IKPDNDTYAILLEGWEKERD--------------------VANAKKTFGEMVI- 232 (482)
Q Consensus 180 ~~~~g~~~~a~~~~~~-~~---~-~-~~~~~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~~~~- 232 (482)
+--.|.+++|...... +. + + -......+..+.+.|...|+ ++.|.++|.+-.+
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l 184 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLEL 184 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 5556777776653322 21 0 1 11123344455566654332 3344455543221
Q ss_pred --hcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHH----HcCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHhh-
Q 038748 233 --EVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMM----ERGCN-PGMTFFKLAFEECLTGQNLRGAEFIWGAMV- 304 (482)
Q Consensus 233 --~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~----~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~- 304 (482)
+.|-.-....+|..+-+.|+-. |+++.|+..-+.-. +.|-. .....+..+.+++.-.|+++.|.+.|+...
T Consensus 185 ~~~lgDr~aqGRa~GnLGNTyYlL-Gdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~ 263 (639)
T KOG1130|consen 185 SEKLGDRLAQGRAYGNLGNTYYLL-GDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLN 263 (639)
T ss_pred HHHhhhHHhhcchhcccCceeeee-ccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHH
Confidence 1121111234566677777777 89999887665432 22311 224567777888888899999988887643
Q ss_pred ---cccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038748 305 ---GRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYN-----GAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK 376 (482)
Q Consensus 305 ---~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 376 (482)
+-..-.....+..+|..+|.-..++++|+.++.+-..- ...-....+.+|..+|...|..++|+.+.+.-.+
T Consensus 264 LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 264 LAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 11112334566777888888888899998887654321 1122446788888899999999999887766554
Q ss_pred C
Q 038748 377 N 377 (482)
Q Consensus 377 ~ 377 (482)
.
T Consensus 344 ~ 344 (639)
T KOG1130|consen 344 S 344 (639)
T ss_pred H
Confidence 3
No 194
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.23 E-value=0.097 Score=43.98 Aligned_cols=62 Identities=6% Similarity=0.003 Sum_probs=41.2
Q ss_pred hHHHHHHHHhhCCCcHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHhhCChhhHHHHHHHHHhc
Q 038748 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENV---LSLATFASVFSSYVVADRVKDAITTFDVMEQY 164 (482)
Q Consensus 103 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 164 (482)
.+-.....+...|++++|.+.|+.+....+ ....+.-.++.++.+.|+++.|...++.+.+.
T Consensus 7 ~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 7 ALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 334444556667888888888888877654 23455667777788888888888888887765
No 195
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.23 E-value=0.021 Score=50.86 Aligned_cols=27 Identities=7% Similarity=0.037 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhh
Q 038748 278 TFFKLAFEECLTGQNLRGAEFIWGAMV 304 (482)
Q Consensus 278 ~~~~~li~~~~~~g~~~~a~~~~~~~~ 304 (482)
..|......|...|++++|.+.|....
T Consensus 36 ~~y~~Aa~~fk~~~~~~~A~~ay~kAa 62 (282)
T PF14938_consen 36 DLYEKAANCFKLAKDWEKAAEAYEKAA 62 (282)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHH
Confidence 445566666666777777777766653
No 196
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.21 E-value=0.004 Score=47.18 Aligned_cols=98 Identities=6% Similarity=0.017 Sum_probs=73.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 038748 203 DNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKL 282 (482)
Q Consensus 203 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 282 (482)
|..++..+|.++++.|+++....+++.. .|+.++....- +. --......|+..+..+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~---WgI~~~~~~~~-----------~~---------~~~~spl~Pt~~lL~A 57 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSV---WGIDVNGKKKE-----------GD---------YPPSSPLYPTSRLLIA 57 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHh---cCCCCCCcccc-----------Cc---------cCCCCCCCCCHHHHHH
Confidence 4678888999999999999988888655 46666422110 00 1122346788999999
Q ss_pred HHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHH
Q 038748 283 AFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLY 323 (482)
Q Consensus 283 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 323 (482)
++.+|+..|++..|.++.+...+..+++.+..+|..|+.=.
T Consensus 58 Iv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 58 IVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 99999999999999999999888888888888888888643
No 197
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.21 E-value=0.0019 Score=43.34 Aligned_cols=63 Identities=10% Similarity=0.135 Sum_probs=41.2
Q ss_pred HhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhC-ChhhHHHHHHHHHh
Q 038748 101 PYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVAD-RVKDAITTFDVMEQ 163 (482)
Q Consensus 101 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~ 163 (482)
...|..+...+...|++++|+..|++..+.++.+...|..+..++...| ++++|++.++...+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 4556666666666666666666666666666656666666666666666 56666666666554
No 198
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.18 E-value=0.0011 Score=44.24 Aligned_cols=49 Identities=14% Similarity=0.205 Sum_probs=22.9
Q ss_pred cCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 038748 183 DGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMV 231 (482)
Q Consensus 183 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 231 (482)
.|++++|.++|+.+....+.+...+..+..+|.+.|++++|..+++.+.
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444455554444433333344444445555555555555555554444
No 199
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=0.18 Score=45.60 Aligned_cols=254 Identities=12% Similarity=0.031 Sum_probs=139.1
Q ss_pred hhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCC-HhhHHHHHHHHHhcCChHhHH
Q 038748 112 GKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHD-VFALNSLLSAICRDGKTIDAW 190 (482)
Q Consensus 112 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~ 190 (482)
-+..++..|+..+....+..+.+...|..-...+...|++++|.-=.+.-.+.. |+ .....-.-.++...++..+|.
T Consensus 60 yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k--d~~~k~~~r~~~c~~a~~~~i~A~ 137 (486)
T KOG0550|consen 60 YKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLK--DGFSKGQLREGQCHLALSDLIEAE 137 (486)
T ss_pred HHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecC--CCccccccchhhhhhhhHHHHHHH
Confidence 344455556666666666555555555555555555566665555444433321 11 111111222222223333333
Q ss_pred HHHH------------HhhC-----CCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHH
Q 038748 191 QFLR------------VVDG-----RIKPDNDTYAIL-LEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252 (482)
Q Consensus 191 ~~~~------------~~~~-----~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~ 252 (482)
+.++ .... .-+|...+|-.+ ..++...|++++|.+.-..+++ +++.+......--.++.
T Consensus 138 ~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilk---ld~~n~~al~vrg~~~y 214 (486)
T KOG0550|consen 138 EKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILK---LDATNAEALYVRGLCLY 214 (486)
T ss_pred HHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHh---cccchhHHHHhcccccc
Confidence 2221 1111 122444455544 4566778888888887776653 34433332222222333
Q ss_pred ccCCChHHHHHHHHHHHHcCCCCCHHHHHHH-------------HHHHHhcCChhHHHHHHHHhhcc--cCCCCCHHHHH
Q 038748 253 KGCDGIYETVNSLKRMMERGCNPGMTFFKLA-------------FEECLTGQNLRGAEFIWGAMVGR--IGFRPDTHMYN 317 (482)
Q Consensus 253 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-------------i~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~ 317 (482)
-. ++.+.+..-|++....+ |+...-..+ .+-..+.|++..|.+.+.+.+.. .++.++...|.
T Consensus 215 y~-~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~ 291 (486)
T KOG0550|consen 215 YN-DNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYG 291 (486)
T ss_pred cc-cchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHH
Confidence 34 77888888888776643 543332222 23345789999999999988711 12334556677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHH-H--HHHHHhcCCHHHHHHHHHHHHhC
Q 038748 318 MMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNI-L--FEFLVKGRKLWEASGLFNEMVKN 377 (482)
Q Consensus 318 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~-l--l~~~~~~g~~~~a~~~~~~~~~~ 377 (482)
.......+.|+..+|+.--+...+. |..-.-. + ..++...++|++|.+-|+...+.
T Consensus 292 nra~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 292 NRALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HhHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7777778889999999888777663 4332222 2 23455578888888888887765
No 200
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.12 E-value=0.13 Score=43.44 Aligned_cols=133 Identities=13% Similarity=0.049 Sum_probs=72.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHH----
Q 038748 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAV---- 390 (482)
Q Consensus 315 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li---- 390 (482)
+.+.++..+.-.|.+.-....+++..+...+-++.....+.+.-.+.|+.+.|..+|+...+..-..|..+.+.++
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 3445555555556666666666666665545555666666666666677777766666665543333433333332
Q ss_pred -HHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 038748 391 -RVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448 (482)
Q Consensus 391 -~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 448 (482)
..|.-++++.+|...+.++...+- .|...-|.-.-+..-.|+..+|++.++.|....
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~-~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDP-RNAVANNNKALCLLYLGKLKDALKQLEAMVQQD 316 (366)
T ss_pred hhheecccchHHHHHHHhhccccCC-CchhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 234445566666666666654431 222233333333334566677777777766543
No 201
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.10 E-value=0.056 Score=40.57 Aligned_cols=90 Identities=8% Similarity=-0.060 Sum_probs=45.2
Q ss_pred HHHccCCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHhhcccCC-CCCHHHHHHHHHHHHhc
Q 038748 250 TLLKGCDGIYETVNSLKRMMERGCNPG--MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGF-RPDTHMYNMMISLYCYS 326 (482)
Q Consensus 250 ~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~li~~~~~~ 326 (482)
++-.. |+.++|+.+|++....|.... ...+..+..++...|++++|..+|+....+..- ..+......+..++...
T Consensus 10 a~d~~-G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~ 88 (120)
T PF12688_consen 10 AHDSL-GREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNL 88 (120)
T ss_pred HHHhc-CCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHC
Confidence 33444 666666666666666554433 233444555566666666666666665422110 00112222233345556
Q ss_pred CCHHHHHHHHHHHH
Q 038748 327 NETGAAMKLLDEMV 340 (482)
Q Consensus 327 ~~~~~a~~~~~~m~ 340 (482)
|+.++|++.+-...
T Consensus 89 gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 89 GRPKEALEWLLEAL 102 (120)
T ss_pred CCHHHHHHHHHHHH
Confidence 66666666554433
No 202
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.09 E-value=0.13 Score=49.09 Aligned_cols=38 Identities=16% Similarity=0.240 Sum_probs=21.8
Q ss_pred HHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHH
Q 038748 155 ITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRV 195 (482)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 195 (482)
+.-++++++.|-.|+... +...++-.|.+.+|-++|.+
T Consensus 620 i~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 620 ISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred HHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH
Confidence 334455666665566543 33455666677777666654
No 203
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.08 E-value=0.0041 Score=49.21 Aligned_cols=69 Identities=6% Similarity=0.113 Sum_probs=37.1
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHh-----cCCCCCHhh
Q 038748 104 WNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQ-----YGCKHDVFA 172 (482)
Q Consensus 104 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~ 172 (482)
...++..+...|+++.|..+...+....+.+...|..+|.+|...|+...|.+.|+.+.+ .|+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 334444455566666666666666666666666666666666666666666666665532 355555544
No 204
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.07 E-value=0.2 Score=44.54 Aligned_cols=121 Identities=15% Similarity=0.038 Sum_probs=64.5
Q ss_pred hhCCCcHHHHHHHHHHHhcC-CCCHH--------HHHHHHHHHHhhC-ChhhHHHHHHHHHhc--------CCCCCH---
Q 038748 112 GKNCLFDAMWDAIKSMKKEN-VLSLA--------TFASVFSSYVVAD-RVKDAITTFDVMEQY--------GCKHDV--- 170 (482)
Q Consensus 112 ~~~~~~~~a~~~~~~~~~~~-~~~~~--------~~~~li~~~~~~~-~~~~a~~~~~~~~~~--------~~~~~~--- 170 (482)
.+.|+++.|..++.+..... ..++. .|+.-... ...+ +++.|..++++..+. ...++.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l-~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSL-LSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHH-HHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 45677888888887776644 22222 22222222 3334 666666666554332 112222
Q ss_pred --hhHHHHHHHHHhcCChHh---HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHh
Q 038748 171 --FALNSLLSAICRDGKTID---AWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIE 233 (482)
Q Consensus 171 --~~~~~ll~~~~~~g~~~~---a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 233 (482)
.++..++.+|...+..+. |..+++.+.+..+-...++..-+..+.+.++.+.+.+.+.+|...
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 344555666666555433 444444454433334555555566666667777777777777653
No 205
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.06 E-value=0.33 Score=47.01 Aligned_cols=121 Identities=12% Similarity=0.124 Sum_probs=64.9
Q ss_pred CCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcC-C---------CCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCC
Q 038748 98 KHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKEN-V---------LSLATFASVFSSYVVADRVKDAITTFDVMEQYGCK 167 (482)
Q Consensus 98 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~---------~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 167 (482)
.|-+..|..+.......-.++-|...|-+...-. + .+...-.+=+.+| -|++++|.++|-+|.+..
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrD-- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRD-- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhh--
Confidence 3666777777766666656666666555443321 1 1222222223333 277777777776665532
Q ss_pred CCHhhHHHHHHHHHhcCChHhHHHHHHHhhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038748 168 HDVFALNSLLSAICRDGKTIDAWQFLRVVDG--RIKPDNDTYAILLEGWEKERDVANAKKTFGE 229 (482)
Q Consensus 168 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 229 (482)
..+..+.+.|++-.+.++++.=.. ..+.-...|+.+...++....|++|.+.|..
T Consensus 765 -------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~ 821 (1189)
T KOG2041|consen 765 -------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSY 821 (1189)
T ss_pred -------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 234555666676666655543221 1122234566666666666666666666544
No 206
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.06 E-value=0.013 Score=51.16 Aligned_cols=26 Identities=15% Similarity=-0.020 Sum_probs=12.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhH
Q 038748 206 TYAILLEGWEKERDVANAKKTFGEMV 231 (482)
Q Consensus 206 ~~~~l~~~~~~~~~~~~a~~~~~~~~ 231 (482)
.+..+..+|...|++++|...|..+.
T Consensus 182 A~y~LG~~y~~~g~~~~A~~~f~~vv 207 (263)
T PRK10803 182 ANYWLGQLNYNKGKKDDAAYYFASVV 207 (263)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33344444444444444444444444
No 207
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.05 E-value=0.036 Score=43.78 Aligned_cols=72 Identities=17% Similarity=0.163 Sum_probs=51.0
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH-----HcCCCCCHHHHH
Q 038748 385 NCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMA-----EKGIQVTPFALS 457 (482)
Q Consensus 385 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~~~~~~~~~~~ 457 (482)
....++..+...|+++.|.++++.+.... +.|...|..+|.+|...|+..+|.+.|+++. +.|+.|++.+-.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 44566777788899999999999988765 3466788899999999999999999988773 458888876643
No 208
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.04 E-value=0.016 Score=50.43 Aligned_cols=95 Identities=19% Similarity=0.117 Sum_probs=48.9
Q ss_pred HHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCC----HhhHHHHHHHHHhcCChHhHHHHHHHhhCCCC---CCHHHHHH
Q 038748 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHD----VFALNSLLSAICRDGKTIDAWQFLRVVDGRIK---PDNDTYAI 209 (482)
Q Consensus 137 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~ 209 (482)
.|...+..+.+.|++++|...|+.+.+.. |+ ...+--+..+|...|++++|...|+.+....+ .....+..
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 34444444444556666666666555532 22 13444455555566666666666665543222 22333444
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHh
Q 038748 210 LLEGWEKERDVANAKKTFGEMVIE 233 (482)
Q Consensus 210 l~~~~~~~~~~~~a~~~~~~~~~~ 233 (482)
+..++...|+.++|..+|+.+.+.
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 445555666666666666666543
No 209
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.03 E-value=0.0044 Score=41.52 Aligned_cols=59 Identities=17% Similarity=-0.035 Sum_probs=26.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc-cHHHHHHHHHHH
Q 038748 420 TGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKAR-KEAVYEELLKKC 479 (482)
Q Consensus 420 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m 479 (482)
.|..+...+...|++++|+..|++.++.+. -+...|..+..++.+.| ++++|++.+++.
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p-~~~~~~~~~g~~~~~~~~~~~~A~~~~~~a 64 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELDP-NNAEAYYNLGLAYMKLGKDYEEAIEDFEKA 64 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHST-THHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 344444444444555555555544444431 12334444444444444 444444444443
No 210
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.97 E-value=0.021 Score=51.27 Aligned_cols=131 Identities=10% Similarity=-0.074 Sum_probs=80.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-ccChhhHHHHHHHHhcCCChHHHHHHHHHHH----HcCC-CCChh
Q 038748 350 TYNILFEFLVKGRKLWEASGLFNEMVKN----EN-VLNHENCRAAVRVYMDSDDPYVAIKFWKYMI----ENHC-SDLSE 419 (482)
Q Consensus 350 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~----~~~~-~p~~~ 419 (482)
.|..|-..|.-.|+++.|....+.-++. |- ......+..+..++.-.|+++.|.+.|+.-. +.|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 4555555566667788777665543321 21 1123456667777888888888888777543 2221 12234
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHH----HcC-CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHh
Q 038748 420 TGNLLVAGLCDMHMLPEAVKYAKGMA----EKG-IQVTPFALSKLKQILIKARKEAVYEELLKKCK 480 (482)
Q Consensus 420 ~~~~li~~~~~~g~~~~A~~~~~~m~----~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 480 (482)
+..+|.+.|.-..++++|+.++.+-. +.+ ..-....+.+|..+|...|..++|..+.++-.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 55667777777778888888776532 211 22244677788888888888888887766543
No 211
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.97 E-value=0.084 Score=45.75 Aligned_cols=107 Identities=15% Similarity=0.101 Sum_probs=68.5
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhc---CChHhHHHHHHHhhCCCC
Q 038748 125 KSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRD---GKTIDAWQFLRVVDGRIK 201 (482)
Q Consensus 125 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~~~ 201 (482)
+.-...++-|...|..|...|...|+++.|...|....+.. .++...+..+..++... .+..++..+|+++....+
T Consensus 146 e~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~ 224 (287)
T COG4235 146 ETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDP 224 (287)
T ss_pred HHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCC
Confidence 33344556677777777777777777777777777776642 13445555555544433 234556667777666566
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhHH
Q 038748 202 PDNDTYAILLEGWEKERDVANAKKTFGEMVI 232 (482)
Q Consensus 202 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 232 (482)
.|+.+...|...+...|++.+|...|+.|.+
T Consensus 225 ~~iral~lLA~~afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 225 ANIRALSLLAFAAFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 6777777777777777777777777777763
No 212
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.90 E-value=0.47 Score=46.05 Aligned_cols=189 Identities=12% Similarity=0.079 Sum_probs=116.2
Q ss_pred hhcCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHhhCChh
Q 038748 76 FSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENV---LSLATFASVFSSYVVADRVK 152 (482)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~li~~~~~~~~~~ 152 (482)
...|.+++|.+++-.+.++ ...|..+.+.|++-...+++..-- .+. .-..+|+.+...++....|+
T Consensus 745 ~~~g~feeaek~yld~drr----------DLAielr~klgDwfrV~qL~r~g~-~d~dD~~~e~A~r~ig~~fa~~~~We 813 (1189)
T KOG2041|consen 745 AFYGEFEEAEKLYLDADRR----------DLAIELRKKLGDWFRVYQLIRNGG-SDDDDEGKEDAFRNIGETFAEMMEWE 813 (1189)
T ss_pred hhhcchhHhhhhhhccchh----------hhhHHHHHhhhhHHHHHHHHHccC-CCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 3468888888888765542 345677788888877777665311 112 23567889999999999999
Q ss_pred hHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHH
Q 038748 153 DAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVI 232 (482)
Q Consensus 153 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 232 (482)
+|.+.|..-.. ....+.++.+..++++.+.+...+ +.|....-.+..++...|.-++|.+.|-+..
T Consensus 814 ~A~~yY~~~~~---------~e~~~ecly~le~f~~LE~la~~L----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s- 879 (1189)
T KOG2041|consen 814 EAAKYYSYCGD---------TENQIECLYRLELFGELEVLARTL----PEDSELLPVMADMFTSVGMCDQAVEAYLRRS- 879 (1189)
T ss_pred HHHHHHHhccc---------hHhHHHHHHHHHhhhhHHHHHHhc----CcccchHHHHHHHHHhhchHHHHHHHHHhcc-
Confidence 99988876532 123566676666666655544443 4455666677788888888888887765432
Q ss_pred hcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHH--------------HHHHHHHHhcCChhHHHH
Q 038748 233 EVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFF--------------KLAFEECLTGQNLRGAEF 298 (482)
Q Consensus 233 ~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~--------------~~li~~~~~~g~~~~a~~ 298 (482)
.|. ..+..+... +++.+|.++-+...- |...+. ...|..+.+.|+.-+|.+
T Consensus 880 ----~pk------aAv~tCv~L-nQW~~avelaq~~~l----~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daar 944 (1189)
T KOG2041|consen 880 ----LPK------AAVHTCVEL-NQWGEAVELAQRFQL----PQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAAR 944 (1189)
T ss_pred ----CcH------HHHHHHHHH-HHHHHHHHHHHhccc----hhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHH
Confidence 221 123445555 677777766554321 111111 112444556666666666
Q ss_pred HHHHhh
Q 038748 299 IWGAMV 304 (482)
Q Consensus 299 ~~~~~~ 304 (482)
++.+|.
T Consensus 945 ll~qma 950 (1189)
T KOG2041|consen 945 LLSQMA 950 (1189)
T ss_pred HHHHHh
Confidence 666664
No 213
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.84 E-value=0.0089 Score=40.53 Aligned_cols=57 Identities=4% Similarity=0.038 Sum_probs=45.9
Q ss_pred HHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcC
Q 038748 109 DLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYG 165 (482)
Q Consensus 109 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 165 (482)
..|.+.++++.|.++++.+...++.+...+.....++...|++++|.+.|+...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 466778888888888888888877777778888888888888888888888887754
No 214
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.82 E-value=0.37 Score=43.97 Aligned_cols=187 Identities=11% Similarity=-0.019 Sum_probs=112.3
Q ss_pred HHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHhhccc-C--CCCCHHHHHHHHHHHHh---cCCH
Q 038748 259 YETVNSLKRMMERGCNP---GMTFFKLAFEECLTGQNLRGAEFIWGAMVGRI-G--FRPDTHMYNMMISLYCY---SNET 329 (482)
Q Consensus 259 ~~a~~~~~~m~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~--~~~~~~~~~~li~~~~~---~~~~ 329 (482)
++..+.+.+|...--.| +..+...++-+|....+++...++.+.+. .. . +.-...+--...-++.+ .|+.
T Consensus 120 ~~l~~~L~~i~~rLd~~~~ls~div~~lllSyRdiqdydamI~Lve~l~-~~p~~~~~~~~~i~~~yafALnRrn~~gdr 198 (374)
T PF13281_consen 120 KELAKELRRIRQRLDDPELLSPDIVINLLLSYRDIQDYDAMIKLVETLE-ALPTCDVANQHNIKFQYAFALNRRNKPGDR 198 (374)
T ss_pred HHHHHHHHHHHHhhCCHhhcChhHHHHHHHHhhhhhhHHHHHHHHHHhh-ccCccchhcchHHHHHHHHHHhhcccCCCH
Confidence 44555556665542222 33344456667888999999999999984 32 1 11122222334445666 7899
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh---------cCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCC-h
Q 038748 330 GAAMKLLDEMVYNGAFPDIQTYNILFEFLVK---------GRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDD-P 399 (482)
Q Consensus 330 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~ 399 (482)
++|++++..+......++..+|..+...|-. ....++|...|.+.-+.. ||...--.+...+.-.|. .
T Consensus 199 e~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--~~~Y~GIN~AtLL~~~g~~~ 276 (374)
T PF13281_consen 199 EKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE--PDYYSGINAATLLMLAGHDF 276 (374)
T ss_pred HHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC--ccccchHHHHHHHHHcCCcc
Confidence 9999999997666667788888888876532 124667778887766543 454332222222333332 2
Q ss_pred H---HHHHHH---HH-HHHcCCC---CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 038748 400 Y---VAIKFW---KY-MIENHCS---DLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448 (482)
Q Consensus 400 ~---~a~~~~---~~-m~~~~~~---p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 448 (482)
+ +..++- .. +.++|.. .|.-.+..++.++.-.|+.++|.+..++|....
T Consensus 277 ~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 277 ETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred cchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 2 233333 11 1133432 233344677888888999999999999998663
No 215
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.82 E-value=0.19 Score=40.24 Aligned_cols=127 Identities=13% Similarity=-0.007 Sum_probs=100.4
Q ss_pred CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcC---CCCChhh
Q 038748 344 AFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENH---CSDLSET 420 (482)
Q Consensus 344 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---~~p~~~~ 420 (482)
..|+...-..|..++...|+..+|...|++...--+.-|......+.++....+++..|...++.+.+.. -.|| +
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--G 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--c
Confidence 3578877888999999999999999999999876666688888899999999999999999999988753 2343 4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccHHHHHH
Q 038748 421 GNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEE 474 (482)
Q Consensus 421 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 474 (482)
.-.+...|...|++.+|...|+.....- |+...-......+.+.|+.+++..
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~y--pg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISYY--PGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHhC--CCHHHHHHHHHHHHHhcchhHHHH
Confidence 4556688899999999999999998765 555444445556777886655543
No 216
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.76 E-value=0.4 Score=43.20 Aligned_cols=294 Identities=11% Similarity=-0.051 Sum_probs=169.2
Q ss_pred HHHHHHHHHh--hCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHH--HhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHH
Q 038748 138 FASVFSSYVV--ADRVKDAITTFDVMEQYGCKHDVFALNSLLSAI--CRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEG 213 (482)
Q Consensus 138 ~~~li~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 213 (482)
|.+|-.+++- .|+-..|.++-.+..+. +.-|....-.|+.+- .-.|+++.|.+-|+-|....+.-..-..-|.-.
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyle 163 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLE 163 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHH
Confidence 4455555443 46777777766655432 233555555555443 345888888888888865211111122233333
Q ss_pred HHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcC-CCCCHH--HHHHHHHHHHh-
Q 038748 214 WEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERG-CNPGMT--FFKLAFEECLT- 289 (482)
Q Consensus 214 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~--~~~~li~~~~~- 289 (482)
..+.|+.+.|.+.-+..- +..|.-.-.+...+...+.. |+++.|+++++.-+... +.++.. .-..|+.+-..
T Consensus 164 Aqr~GareaAr~yAe~Aa---~~Ap~l~WA~~AtLe~r~~~-gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s 239 (531)
T COG3898 164 AQRLGAREAARHYAERAA---EKAPQLPWAARATLEARCAA-GDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMS 239 (531)
T ss_pred HHhcccHHHHHHHHHHHH---hhccCCchHHHHHHHHHHhc-CChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH
Confidence 456788888888777764 44565556778888888888 88888888888765543 333322 12223322221
Q ss_pred --cCChhHHHHHHHHhhcccCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHH
Q 038748 290 --GQNLRGAEFIWGAMVGRIGFRPDTHM-YNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWE 366 (482)
Q Consensus 290 --~g~~~~a~~~~~~~~~~~~~~~~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 366 (482)
..+...|...-.+.. ++.||..- --.-..++.+.|+..++-.+++.+-+....|+ .+ .+....+.|+.
T Consensus 240 ~ldadp~~Ar~~A~~a~---KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~--ia--~lY~~ar~gdt-- 310 (531)
T COG3898 240 LLDADPASARDDALEAN---KLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD--IA--LLYVRARSGDT-- 310 (531)
T ss_pred HhcCChHHHHHHHHHHh---hcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH--HH--HHHHHhcCCCc--
Confidence 234445555444443 44555332 22234567888888888888888887644443 22 22223445542
Q ss_pred HHHHHHHHHhC-CCcc-ChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHH-hcCChhHHHHHHHH
Q 038748 367 ASGLFNEMVKN-ENVL-NHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLC-DMHMLPEAVKYAKG 443 (482)
Q Consensus 367 a~~~~~~~~~~-~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~ 443 (482)
+..-++...+. .++| +......+..+-...|++..|..--+.... ..|....|-.|...-. ..|+-.++...+.+
T Consensus 311 a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAq 388 (531)
T COG3898 311 ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQ 388 (531)
T ss_pred HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHH
Confidence 33333222211 1222 445556677777788888887776666554 4566677776665543 44888888888877
Q ss_pred HHHc
Q 038748 444 MAEK 447 (482)
Q Consensus 444 m~~~ 447 (482)
....
T Consensus 389 av~A 392 (531)
T COG3898 389 AVKA 392 (531)
T ss_pred HhcC
Confidence 7654
No 217
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.079 Score=45.91 Aligned_cols=109 Identities=10% Similarity=0.004 Sum_probs=92.8
Q ss_pred CCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhC---ChhhHHHHHHHHHhcCCCCCHhh
Q 038748 96 NDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVAD---RVKDAITTFDVMEQYGCKHDVFA 172 (482)
Q Consensus 96 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~ 172 (482)
..+-|...|-.|...|...|+++.|..-|....+..+.+...+..+..++..+. .-.++..+|+++..... -|+.+
T Consensus 151 ~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~-~~ira 229 (287)
T COG4235 151 QNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDP-ANIRA 229 (287)
T ss_pred hCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCC-ccHHH
Confidence 355688999999999999999999999999999998889998988888876653 46789999999998653 47777
Q ss_pred HHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHH
Q 038748 173 LNSLLSAICRDGKTIDAWQFLRVVDGRIKPDND 205 (482)
Q Consensus 173 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 205 (482)
...|...+...|++.+|...++.|.+..+|+..
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 888888999999999999999998876666543
No 218
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.70 E-value=0.47 Score=45.63 Aligned_cols=84 Identities=15% Similarity=0.074 Sum_probs=45.3
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH-----------
Q 038748 385 NCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTP----------- 453 (482)
Q Consensus 385 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----------- 453 (482)
+...+...+.+...+.-|-++|..|-+. ..++......++|.+|..+.++..+. .||.
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~ 817 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAEN 817 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhh
Confidence 3333344444455566666666665432 23445555666677766666654332 1221
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHH
Q 038748 454 FALSKLKQILIKARKEAVYEELLKKC 479 (482)
Q Consensus 454 ~~~~~l~~~~~~~g~~~~a~~~~~~m 479 (482)
.-|...-++|.++|+..+|.++++++
T Consensus 818 DrFeEAqkAfhkAGr~~EA~~vLeQL 843 (1081)
T KOG1538|consen 818 DRFEEAQKAFHKAGRQREAVQVLEQL 843 (1081)
T ss_pred hhHHHHHHHHHHhcchHHHHHHHHHh
Confidence 22333445677777777777777765
No 219
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.60 E-value=0.19 Score=39.20 Aligned_cols=86 Identities=17% Similarity=0.165 Sum_probs=42.3
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhc
Q 038748 104 WNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRD 183 (482)
Q Consensus 104 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 183 (482)
...+|..+...+.+.....+++.+...+..+...++.++..|++.+. .+.++.+.. ..+......++..|.+.
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~~-~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYDP-QKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHCH-HHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 34455555555556666666666555554455555666666654422 222222221 12223334455555555
Q ss_pred CChHhHHHHHHHh
Q 038748 184 GKTIDAWQFLRVV 196 (482)
Q Consensus 184 g~~~~a~~~~~~~ 196 (482)
+.++++..++..+
T Consensus 83 ~l~~~~~~l~~k~ 95 (140)
T smart00299 83 KLYEEAVELYKKD 95 (140)
T ss_pred CcHHHHHHHHHhh
Confidence 5555555555544
No 220
>PRK15331 chaperone protein SicA; Provisional
Probab=96.60 E-value=0.25 Score=38.94 Aligned_cols=87 Identities=11% Similarity=-0.057 Sum_probs=51.3
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHH
Q 038748 358 LVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEA 437 (482)
Q Consensus 358 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 437 (482)
+...|++++|..+|.-+...+.. +..-+..|..+|-..+++++|...|......+. -|...+.....+|...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHH
Confidence 44566777777777666554433 344455566666666667777776666554332 2333344455566666777777
Q ss_pred HHHHHHHHH
Q 038748 438 VKYAKGMAE 446 (482)
Q Consensus 438 ~~~~~~m~~ 446 (482)
...|+..++
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 777666655
No 221
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.59 E-value=0.058 Score=40.92 Aligned_cols=55 Identities=9% Similarity=-0.020 Sum_probs=42.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHcc
Q 038748 199 RIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG 254 (482)
Q Consensus 199 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 254 (482)
...|+..+..+++.+|+..|++..|.++++...+.+++.- ...+|..|+.-....
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i-~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPI-PKEFWRRLLEWAYVL 101 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHh
Confidence 3568888888888888888888888888888888777544 466777777655544
No 222
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.42 E-value=0.013 Score=40.42 Aligned_cols=62 Identities=16% Similarity=0.095 Sum_probs=34.8
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHc----CC-CCC-HHHHHHHHHHHHHhccHHHHHHHHHHHh
Q 038748 419 ETGNLLVAGLCDMHMLPEAVKYAKGMAEK----GI-QVT-PFALSKLKQILIKARKEAVYEELLKKCK 480 (482)
Q Consensus 419 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~-~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 480 (482)
.+|+.+...|...|++++|+..|++..+. |- .|+ ..++..+..++...|++++|++++++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34555666666666666666666665422 11 111 3455566666667777777766666543
No 223
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.31 E-value=0.12 Score=48.85 Aligned_cols=104 Identities=13% Similarity=0.025 Sum_probs=46.6
Q ss_pred hhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHH
Q 038748 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAIC 181 (482)
Q Consensus 102 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 181 (482)
...+.++..+-+.|-.+.|+.+...-.. -.....+.|+++.|.++.++. .+...|..|...+.
T Consensus 296 ~~~~~i~~fL~~~G~~e~AL~~~~D~~~-----------rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL 358 (443)
T PF04053_consen 296 DQGQSIARFLEKKGYPELALQFVTDPDH-----------RFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEAL 358 (443)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHSS-HHH-----------HHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHhhcCChHH-----------HhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHH
Confidence 3455555555555555555554333211 123334445555554443222 24445555555555
Q ss_pred hcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 038748 182 RDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEM 230 (482)
Q Consensus 182 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 230 (482)
+.|+++-|++.|.+.+ -|..|+-.|.-.|+.+...++.+..
T Consensus 359 ~~g~~~lAe~c~~k~~--------d~~~L~lLy~~~g~~~~L~kl~~~a 399 (443)
T PF04053_consen 359 RQGNIELAEECYQKAK--------DFSGLLLLYSSTGDREKLSKLAKIA 399 (443)
T ss_dssp HTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHhhc--------CccccHHHHHHhCCHHHHHHHHHHH
Confidence 5555555555555443 2344444444455544444444333
No 224
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.31 E-value=0.028 Score=38.00 Aligned_cols=51 Identities=8% Similarity=-0.059 Sum_probs=20.5
Q ss_pred HhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 038748 181 CRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMV 231 (482)
Q Consensus 181 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 231 (482)
.+.+++++|.++++.+..-.+.+...+.....++.+.|++++|...|+...
T Consensus 6 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 6 LQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERAL 56 (73)
T ss_pred HhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 333444444444444333223333334444444444444444444444443
No 225
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.19 E-value=0.53 Score=40.89 Aligned_cols=120 Identities=10% Similarity=0.015 Sum_probs=52.9
Q ss_pred HhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHH
Q 038748 111 LGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAW 190 (482)
Q Consensus 111 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 190 (482)
....|++..|..+|.........+...-..++.+|...|+++.|..++..+...--.........-|..+.+.....+..
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~ 223 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQ 223 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHH
Confidence 33455555555555555555544445555555555555555555555555543211111111112233333333333333
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 038748 191 QFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMV 231 (482)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 231 (482)
.+-..... .+-|...-..+...+...|+.+.|.+.+-.+.
T Consensus 224 ~l~~~~aa-dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l 263 (304)
T COG3118 224 DLQRRLAA-DPDDVEAALALADQLHLVGRNEAALEHLLALL 263 (304)
T ss_pred HHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 22222221 12244444444555555555555554444333
No 226
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=96.15 E-value=0.9 Score=40.50 Aligned_cols=128 Identities=10% Similarity=0.095 Sum_probs=60.3
Q ss_pred HHHHHHHHhhcccCCCCCHHHHHHHHHHHHh--cC----CHHHHHHHHHHHHHCCC---CCCHhhHHHHHHHHHhcCC--
Q 038748 295 GAEFIWGAMVGRIGFRPDTHMYNMMISLYCY--SN----ETGAAMKLLDEMVYNGA---FPDIQTYNILFEFLVKGRK-- 363 (482)
Q Consensus 295 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~--~~----~~~~a~~~~~~m~~~g~---~p~~~~~~~ll~~~~~~g~-- 363 (482)
+...+++.+. +.|+.-+..+|-+....... .. ...+|..+|+.|.+... .++...+..++.. ..++
T Consensus 80 ~~~~~y~~L~-~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 80 EVLDIYEKLK-EAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHH-HhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 3455666663 55666665554442222221 11 24456667777766532 2333445444433 2222
Q ss_pred --HHHHHHHHHHHHhCCCccChh-hHHHHHHHHhcC-CC--hHHHHHHHHHHHHcCCCCChhhHHHHH
Q 038748 364 --LWEASGLFNEMVKNENVLNHE-NCRAAVRVYMDS-DD--PYVAIKFWKYMIENHCSDLSETGNLLV 425 (482)
Q Consensus 364 --~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~-~~--~~~a~~~~~~m~~~~~~p~~~~~~~li 425 (482)
.+.++.+|+.+.+.|+..+-. -+.+-+-++... .. +..+.++++.+.+.|+++....|..+.
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 234556666666655544322 122222222221 11 335566666666666666655554443
No 227
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.12 E-value=0.092 Score=47.41 Aligned_cols=125 Identities=10% Similarity=-0.038 Sum_probs=70.2
Q ss_pred HHHHHhhCChhhHHHHHHHHHhc-----CCC---------CCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHH
Q 038748 142 FSSYVVADRVKDAITTFDVMEQY-----GCK---------HDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTY 207 (482)
Q Consensus 142 i~~~~~~~~~~~a~~~~~~~~~~-----~~~---------~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 207 (482)
...|.+.|++..|..-|+..... +.. .-..+++.|..++.+.+++..|++..+....-.++|....
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KAL 294 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKAL 294 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHH
Confidence 34677888888888888876542 111 1123445555666666666666666666554445566666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHH
Q 038748 208 AILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMM 269 (482)
Q Consensus 208 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~ 269 (482)
---..+|...|+++.|...|+.+. .+.|+|..+-+.++...-+.....+...++|..|.
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~---k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKAL---KLEPSNKAARAELIKLKQKIREYEEKEKKMYANMF 353 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHH---HhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 666666666666666666666665 34665554444444444333122223344555544
No 228
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.11 E-value=1.7 Score=43.36 Aligned_cols=109 Identities=16% Similarity=0.039 Sum_probs=55.8
Q ss_pred hhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHH
Q 038748 112 GKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ 191 (482)
Q Consensus 112 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 191 (482)
-+.|++++|...|-+-...--|+ .+|.-|....+...-..+++.+.+.|+. +...-..|+.+|.+.++.++..+
T Consensus 379 y~Kgdf~~A~~qYI~tI~~le~s-----~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~e 452 (933)
T KOG2114|consen 379 YGKGDFDEATDQYIETIGFLEPS-----EVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTE 452 (933)
T ss_pred HhcCCHHHHHHHHHHHcccCChH-----HHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHH
Confidence 34666776666555433321122 3455555555566666666666666653 44445566666666666666655
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038748 192 FLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFG 228 (482)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 228 (482)
+.+....|.. ..-....+..+.+.+-.++|..+-.
T Consensus 453 fI~~~~~g~~--~fd~e~al~Ilr~snyl~~a~~LA~ 487 (933)
T KOG2114|consen 453 FISKCDKGEW--FFDVETALEILRKSNYLDEAELLAT 487 (933)
T ss_pred HHhcCCCcce--eeeHHHHHHHHHHhChHHHHHHHHH
Confidence 5554443211 0012334444555555555554443
No 229
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.08 E-value=1.1 Score=40.97 Aligned_cols=28 Identities=4% Similarity=0.041 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038748 314 HMYNMMISLYCYSNETGAAMKLLDEMVY 341 (482)
Q Consensus 314 ~~~~~li~~~~~~~~~~~a~~~~~~m~~ 341 (482)
..+.+++.+..-.|+.++|.+..++|.+
T Consensus 306 Wd~ATl~Ea~vL~~d~~ka~~a~e~~~~ 333 (374)
T PF13281_consen 306 WDVATLLEASVLAGDYEKAIQAAEKAFK 333 (374)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhh
Confidence 3344444555555555555555555554
No 230
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.05 E-value=0.8 Score=39.01 Aligned_cols=56 Identities=18% Similarity=0.065 Sum_probs=30.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCccCh---hhHHHHHHHHhcCCChHHHHHHHHHHH
Q 038748 354 LFEFLVKGRKLWEASGLFNEMVKNENVLNH---ENCRAAVRVYMDSDDPYVAIKFWKYMI 410 (482)
Q Consensus 354 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~ 410 (482)
+.+-|.+.|.+..|..-+++|++. ..-+. ..+-.+..+|...|-.++|.+.-+-+.
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 334566666666666666666665 11122 223345556666666666665544443
No 231
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.05 E-value=0.19 Score=46.58 Aligned_cols=68 Identities=9% Similarity=-0.118 Sum_probs=59.1
Q ss_pred CCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHhhCChhhHHHHHHHHHhc
Q 038748 97 DKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSL---ATFASVFSSYVVADRVKDAITTFDVMEQY 164 (482)
Q Consensus 97 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 164 (482)
.+.+...|+.+..+|...|++++|+..|++..+.++.+. .+|..+..+|...|++++|++.+++..+.
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345678899999999999999999999999998887555 45899999999999999999999999884
No 232
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.01 E-value=0.024 Score=39.02 Aligned_cols=23 Identities=22% Similarity=0.106 Sum_probs=9.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHH
Q 038748 421 GNLLVAGLCDMHMLPEAVKYAKG 443 (482)
Q Consensus 421 ~~~li~~~~~~g~~~~A~~~~~~ 443 (482)
++.+..+|...|++++|++++++
T Consensus 49 ~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 49 LNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 33344444444444444444443
No 233
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.00 E-value=0.16 Score=43.44 Aligned_cols=100 Identities=20% Similarity=0.094 Sum_probs=62.4
Q ss_pred hHHHHHHHHhhCCCcHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCC-CC-CHhhHHHHH
Q 038748 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENV---LSLATFASVFSSYVVADRVKDAITTFDVMEQYGC-KH-DVFALNSLL 177 (482)
Q Consensus 103 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~-~~~~~~~ll 177 (482)
.|+.-++.+ +.|++..|...|....+..+ -...++..|..++...|++++|..+|..+.+.-. .| -+..+--|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 466655544 45567777777777777664 2455666777777777777777777777765411 11 224555566
Q ss_pred HHHHhcCChHhHHHHHHHhhCCCCCC
Q 038748 178 SAICRDGKTIDAWQFLRVVDGRIKPD 203 (482)
Q Consensus 178 ~~~~~~g~~~~a~~~~~~~~~~~~~~ 203 (482)
.+..+.|+.++|..+|+++.+..+-+
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t 248 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGT 248 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCC
Confidence 66666677777777777665544433
No 234
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.98 E-value=0.34 Score=45.89 Aligned_cols=159 Identities=11% Similarity=0.042 Sum_probs=101.0
Q ss_pred HHHhhCCCcHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChH
Q 038748 109 DLLGKNCLFDAMWDAIKSMK-KENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTI 187 (482)
Q Consensus 109 ~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 187 (482)
....-+++++.+.++...-. -..+ +....+.++..+-+.|..+.|+++-..-. .-.....+.|+++
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~i-~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~ 335 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPNI-PKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLD 335 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG---HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HH
T ss_pred HHHHHcCChhhhhhhhhhhhhcccC-ChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHH
Confidence 44455788888777665111 1112 35668888888888899998887653321 2445667889999
Q ss_pred hHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHH
Q 038748 188 DAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKR 267 (482)
Q Consensus 188 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~ 267 (482)
.|.++.++. .+...|..|.....+.|+++-|++.|.+.. -+..++-.+... |+.+...++.+.
T Consensus 336 ~A~~~a~~~-----~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~-----------d~~~L~lLy~~~-g~~~~L~kl~~~ 398 (443)
T PF04053_consen 336 IALEIAKEL-----DDPEKWKQLGDEALRQGNIELAEECYQKAK-----------DFSGLLLLYSST-GDREKLSKLAKI 398 (443)
T ss_dssp HHHHHCCCC-----STHHHHHHHHHHHHHTTBHHHHHHHHHHCT------------HHHHHHHHHHC-T-HHHHHHHHHH
T ss_pred HHHHHHHhc-----CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc-----------CccccHHHHHHh-CCHHHHHHHHHH
Confidence 987665543 377799999999999999999999888764 245556666666 888777777776
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 038748 268 MMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAM 303 (482)
Q Consensus 268 m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 303 (482)
....|- ++....++.-.|++++..+++.+.
T Consensus 399 a~~~~~------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 399 AEERGD------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHccC------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 666552 455566666678888877777654
No 235
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.95 E-value=0.1 Score=44.59 Aligned_cols=70 Identities=19% Similarity=0.307 Sum_probs=44.4
Q ss_pred hhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhc----------------CCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 038748 293 LRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYS----------------NETGAAMKLLDEMVYNGAFPDIQTYNILFE 356 (482)
Q Consensus 293 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~----------------~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 356 (482)
++-....++.| ++.|+..|..+|+.|+..+-+. .+-+-+++++++|...|+.||..+-..++.
T Consensus 88 veFIy~ALk~m-~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn 166 (406)
T KOG3941|consen 88 VEFIYTALKYM-KEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVN 166 (406)
T ss_pred HHHHHHHHHHH-HHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHH
Confidence 33333344444 3455555555555555444332 123457888999999999999999999999
Q ss_pred HHHhcCC
Q 038748 357 FLVKGRK 363 (482)
Q Consensus 357 ~~~~~g~ 363 (482)
++.+.+-
T Consensus 167 ~FGr~~~ 173 (406)
T KOG3941|consen 167 AFGRWNF 173 (406)
T ss_pred Hhccccc
Confidence 8877664
No 236
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.82 E-value=0.5 Score=45.43 Aligned_cols=178 Identities=12% Similarity=0.018 Sum_probs=116.6
Q ss_pred hHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcC-CCC------HHHHHHHHHHHHh----hCCh
Q 038748 83 PAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKEN-VLS------LATFASVFSSYVV----ADRV 151 (482)
Q Consensus 83 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~------~~~~~~li~~~~~----~~~~ 151 (482)
-..-+|..+.. -. +.....+++..+=.||-+..++++.+..+.+ +.. .-.|..++..++. ....
T Consensus 175 ~G~G~f~L~lS--lL---Pp~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~ 249 (468)
T PF10300_consen 175 FGFGLFNLVLS--LL---PPKVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPL 249 (468)
T ss_pred HHHHHHHHHHH--hC---CHHHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCH
Confidence 34566666665 22 3456677888888888888888888776654 211 2334444444443 4567
Q ss_pred hhHHHHHHHHHhcCCCCCHhhHHHHH-HHHHhcCChHhHHHHHHHhhC---C-CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 038748 152 KDAITTFDVMEQYGCKHDVFALNSLL-SAICRDGKTIDAWQFLRVVDG---R-IKPDNDTYAILLEGWEKERDVANAKKT 226 (482)
Q Consensus 152 ~~a~~~~~~~~~~~~~~~~~~~~~ll-~~~~~~g~~~~a~~~~~~~~~---~-~~~~~~~~~~l~~~~~~~~~~~~a~~~ 226 (482)
+.|.++++.+.+. .|+...|...- +.+...|++++|.+.|+.... . -+.....+--+.-++.-.++|++|...
T Consensus 250 ~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~ 327 (468)
T PF10300_consen 250 EEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEY 327 (468)
T ss_pred HHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHH
Confidence 8889999988875 46666654433 556677999999999986332 1 223344555666778888999999999
Q ss_pred HHHhHHhcCCCCCChhhHHHHHHHHHccCCCh-------HHHHHHHHHHHH
Q 038748 227 FGEMVIEVGWDPDNVPAYDSYLITLLKGCDGI-------YETVNSLKRMME 270 (482)
Q Consensus 227 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~-------~~a~~~~~~m~~ 270 (482)
|..+.+...+. ...|.-+..++.-..++. ++|.++|.+...
T Consensus 328 f~~L~~~s~WS---ka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 328 FLRLLKESKWS---KAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHhccccH---HHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 99998764443 334544444444443777 899999887644
No 237
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.81 E-value=0.14 Score=43.76 Aligned_cols=88 Identities=17% Similarity=0.168 Sum_probs=40.5
Q ss_pred hcCChHhHHHHHHHhhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCCh
Q 038748 182 RDGKTIDAWQFLRVVDGRIKP---DNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGI 258 (482)
Q Consensus 182 ~~g~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 258 (482)
+.|++..|...|....++.+- ....+-.|..++...|++++|..+|..+.+..+-.|....++--+..+.... |+.
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l-~~~ 231 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRL-GNT 231 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHh-cCH
Confidence 334455555555543332221 2223344555555555555555555555544333333333444444444444 555
Q ss_pred HHHHHHHHHHHH
Q 038748 259 YETVNSLKRMME 270 (482)
Q Consensus 259 ~~a~~~~~~m~~ 270 (482)
++|-.+|++..+
T Consensus 232 d~A~atl~qv~k 243 (262)
T COG1729 232 DEACATLQQVIK 243 (262)
T ss_pred HHHHHHHHHHHH
Confidence 555555555444
No 238
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.76 E-value=0.21 Score=46.27 Aligned_cols=97 Identities=10% Similarity=0.018 Sum_probs=67.6
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCh----hhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHH
Q 038748 347 DIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNH----ENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGN 422 (482)
Q Consensus 347 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 422 (482)
+...++.+..+|...|++++|...|+..++.+ |+. .+|..+..+|...|++++|++.+++.++.+ . ..|.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n---~~f~ 147 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-N---LKFS 147 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-c---hhHH
Confidence 55678888999999999999999999988854 443 358889999999999999999999998752 1 1222
Q ss_pred HHHH--HHHhcCChhHHHHHHHHHHHcCC
Q 038748 423 LLVA--GLCDMHMLPEAVKYAKGMAEKGI 449 (482)
Q Consensus 423 ~li~--~~~~~g~~~~A~~~~~~m~~~~~ 449 (482)
.+.. .+..-.+.++..++++.+...|.
T Consensus 148 ~i~~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 148 TILNDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred HHHhCcchhhhcccHHHHHHHHHHHHhCC
Confidence 1111 01122233456666666666654
No 239
>PRK15331 chaperone protein SicA; Provisional
Probab=95.74 E-value=0.17 Score=39.89 Aligned_cols=82 Identities=9% Similarity=-0.070 Sum_probs=37.5
Q ss_pred hCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHH
Q 038748 113 KNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQF 192 (482)
Q Consensus 113 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 192 (482)
..|++++|..+|.-+...++-+..-|..|..++-..+++++|+..|......+. -|+..+-....++...|+.+.|...
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A~~~ 127 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKARQC 127 (165)
T ss_pred HCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHHHHH
Confidence 345555555555555444444444444444444444555555555544433321 2333333344444444555555544
Q ss_pred HHH
Q 038748 193 LRV 195 (482)
Q Consensus 193 ~~~ 195 (482)
|..
T Consensus 128 f~~ 130 (165)
T PRK15331 128 FEL 130 (165)
T ss_pred HHH
Confidence 444
No 240
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.70 E-value=0.9 Score=43.71 Aligned_cols=26 Identities=4% Similarity=-0.103 Sum_probs=13.2
Q ss_pred HHHHHHHHHhhCChhhHHHHHHHHHh
Q 038748 138 FASVFSSYVVADRVKDAITTFDVMEQ 163 (482)
Q Consensus 138 ~~~li~~~~~~~~~~~a~~~~~~~~~ 163 (482)
+..++....=.|+-+.+++.+....+
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~ 216 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASK 216 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhc
Confidence 44444444445555555555555443
No 241
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.64 E-value=0.16 Score=43.44 Aligned_cols=105 Identities=16% Similarity=0.170 Sum_probs=64.2
Q ss_pred CCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChh
Q 038748 310 RPDTHMYNMMISLYCYS-----NETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHE 384 (482)
Q Consensus 310 ~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 384 (482)
+.|..+|-..+..+... +.++-....++.|.+.|+.-|..+|+.|+..+-+.. +.|...
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk----------------fiP~nv 127 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK----------------FIPQNV 127 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc----------------cccHHH
Confidence 44666666666666542 455666666677777777777777777766553322 122111
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 038748 385 NCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHM 433 (482)
Q Consensus 385 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 433 (482)
.-..++ -|= .+-+-+++++++|...|+-||..+-..|++++.+.+-
T Consensus 128 fQ~~F~-HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 128 FQKVFL-HYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHh-hCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 111111 111 1233467888999999999999888889998877664
No 242
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.50 E-value=0.38 Score=36.10 Aligned_cols=64 Identities=22% Similarity=0.215 Sum_probs=32.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCC
Q 038748 350 TYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHC 414 (482)
Q Consensus 350 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 414 (482)
.+...+..+...|+-+.-.+++.++.+. -.+++.....+..+|.+.|+..++.+++.+.-++|+
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 3444455555566666666666655542 244555555566666666666666666666555554
No 243
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.48 E-value=1.8 Score=38.71 Aligned_cols=133 Identities=11% Similarity=0.141 Sum_probs=83.3
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--cC----ChhHHHHHHHHhhcccCC--CCCHHHHHHHHHHHHhcCC-
Q 038748 258 IYETVNSLKRMMERGCNPGMTFFKLAFEECLT--GQ----NLRGAEFIWGAMVGRIGF--RPDTHMYNMMISLYCYSNE- 328 (482)
Q Consensus 258 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~--~g----~~~~a~~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~- 328 (482)
+++.+.+++.|.+.|+.-+..+|.+....... .. ....|..+|+.|.+.+.+ .++...+..|+.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45567778888888888887777664433333 22 345688999999544433 2345556666544 3333
Q ss_pred ---HHHHHHHHHHHHHCCCCCCHh--hHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCccChhhHHHHHHH
Q 038748 329 ---TGAAMKLLDEMVYNGAFPDIQ--TYNILFEFLVKGRK--LWEASGLFNEMVKNENVLNHENCRAAVRV 392 (482)
Q Consensus 329 ---~~~a~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 392 (482)
.+.++.+|+.+.+.|...+.. ....++..+..... ..++.++++.+.+.|+++....|..+.-.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHH
Confidence 456788888888888765432 33333332222222 45788899999999998887776655443
No 244
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.44 E-value=0.93 Score=35.33 Aligned_cols=43 Identities=12% Similarity=0.008 Sum_probs=20.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhc
Q 038748 282 LAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYS 326 (482)
Q Consensus 282 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 326 (482)
.++..+...+.......+++.+++. + ..+...++.++..|++.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~-~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKL-N-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHcc-C-ccchhHHHHHHHHHHHH
Confidence 3444444445555555555555422 2 23444455555555543
No 245
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.43 E-value=1.9 Score=38.70 Aligned_cols=44 Identities=14% Similarity=0.027 Sum_probs=21.6
Q ss_pred hcCChHhHHHHHHHhhC---CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 038748 182 RDGKTIDAWQFLRVVDG---RIKPDNDTYAILLEGWEKERDVANAKK 225 (482)
Q Consensus 182 ~~g~~~~a~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~ 225 (482)
...+.++|+..+..... ....--.+|..+..+.++.|.+++++.
T Consensus 18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~ 64 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLK 64 (518)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHH
Confidence 34555666555544221 122233455555566666666555544
No 246
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.36 E-value=0.56 Score=42.59 Aligned_cols=63 Identities=10% Similarity=-0.084 Sum_probs=37.4
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 038748 385 NCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448 (482)
Q Consensus 385 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 448 (482)
+++.+.-+|.+.+++..|++..+..+..+ ++|......-..+|...|+++.|...|+++++..
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~ 321 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLE 321 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC
Confidence 34455556666666666666666666544 2444444445556666666666666666666543
No 247
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.35 E-value=1.6 Score=38.72 Aligned_cols=186 Identities=9% Similarity=-0.006 Sum_probs=117.0
Q ss_pred HHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhh--H--HHHHHHHHhcC
Q 038748 287 CLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQT--Y--NILFEFLVKGR 362 (482)
Q Consensus 287 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~--~~ll~~~~~~g 362 (482)
....|+..+|-..+++++++ .+.|...+...=.+|...|+.+.-...++++... ..+|... | ....-++...|
T Consensus 113 ~~~~g~~h~a~~~wdklL~d--~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g 189 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDD--YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECG 189 (491)
T ss_pred hhccccccHHHHHHHHHHHh--CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhc
Confidence 34567788888888888643 3667777887788888889888888888887754 2233322 2 23334456788
Q ss_pred CHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHc---CCCCChhhHHHHHHHHHhcCChhHHHH
Q 038748 363 KLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIEN---HCSDLSETGNLLVAGLCDMHMLPEAVK 439 (482)
Q Consensus 363 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~p~~~~~~~li~~~~~~g~~~~A~~ 439 (482)
-+++|++.-++..+.+.. |.-...+..+.+...|++.++.++..+-.+. +.-.-...|-...-.+...+.++.|++
T Consensus 190 ~y~dAEk~A~ralqiN~~-D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~ale 268 (491)
T KOG2610|consen 190 IYDDAEKQADRALQINRF-DCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALE 268 (491)
T ss_pred cchhHHHHHHhhccCCCc-chHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHH
Confidence 899999888888776533 6666677778888888898888876654421 111112334444445666788999999
Q ss_pred HHHHHHHcCC-CCCHH---HHHHHHHHHHHhccHHHHHHHH
Q 038748 440 YAKGMAEKGI-QVTPF---ALSKLKQILIKARKEAVYEELL 476 (482)
Q Consensus 440 ~~~~m~~~~~-~~~~~---~~~~l~~~~~~~g~~~~a~~~~ 476 (482)
+|+.=+-..+ +.|.. .|.-+.........+.+...+-
T Consensus 269 IyD~ei~k~l~k~Da~a~~~~ld~dgv~~~~d~~~kld~la 309 (491)
T KOG2610|consen 269 IYDREIWKRLEKDDAVARDVYLDLDGVDLRSDLWRKLDKLA 309 (491)
T ss_pred HHHHHHHHHhhccchhhhhhhhhhhhHHhHHHHHHHHHhhh
Confidence 9986433332 34442 2333344444554555444433
No 248
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.30 E-value=0.071 Score=31.73 Aligned_cols=40 Identities=15% Similarity=0.312 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHH
Q 038748 205 DTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSY 247 (482)
Q Consensus 205 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l 247 (482)
.++..+...|...|++++|+++|++..+. .|++...+..+
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~---~P~~~~a~~~L 41 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL---DPDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CcCCHHHHHHh
Confidence 35667777888888888888888888743 77766665544
No 249
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.23 E-value=3.1 Score=40.03 Aligned_cols=352 Identities=11% Similarity=0.018 Sum_probs=201.7
Q ss_pred CCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHH
Q 038748 96 NDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNS 175 (482)
Q Consensus 96 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 175 (482)
....+...|+.+|.---...+.+.+..+++.+....|.-..-|......=.+.|..+.+.++|++.+. |+..+...|..
T Consensus 40 ~~~~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~ 118 (577)
T KOG1258|consen 40 NDSLDFDAWTTLIQENDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLS 118 (577)
T ss_pred cchhcccchHHHHhccCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHH
Confidence 44556677888887776666778888888888887766666677777777888999999999999887 46567777766
Q ss_pred HHHHHH-hcCChHhHHHHHHHhhC--C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHH
Q 038748 176 LLSAIC-RDGKTIDAWQFLRVVDG--R-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITL 251 (482)
Q Consensus 176 ll~~~~-~~g~~~~a~~~~~~~~~--~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~ 251 (482)
.+.-+. ..|+.+.....|+.... | .-.....|...|..-..++++.....++++.++- | ...++.....+
T Consensus 119 Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei----P--~~~~~~~f~~f 192 (577)
T KOG1258|consen 119 YLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI----P--LHQLNRHFDRF 192 (577)
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh----h--hhHhHHHHHHH
Confidence 665544 45777777778887654 2 3345667888888888889999999999988752 3 22333333322
Q ss_pred HccC--------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh-hHHHHHHHHhhcccCCCCCHHHHHHHH--
Q 038748 252 LKGC--------DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNL-RGAEFIWGAMVGRIGFRPDTHMYNMMI-- 320 (482)
Q Consensus 252 ~~~~--------~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~~li-- 320 (482)
.+.. ...+++.++-...... ......+.. +......+... ..+-. -....+.+-
T Consensus 193 ~~~l~~~~~~~l~~~d~~~~l~~~~~~~-------------~~~~~~~~~~e~~~~~v~~~~-~~s~~-l~~~~~~l~~~ 257 (577)
T KOG1258|consen 193 KQLLNQNEEKILLSIDELIQLRSDVAER-------------SKITHSQEPLEELEIGVKDST-DPSKS-LTEEKTILKRI 257 (577)
T ss_pred HHHHhcCChhhhcCHHHHHHHhhhHHhh-------------hhcccccChhHHHHHHHhhcc-Cccch-hhHHHHHHHHH
Confidence 2210 1111111111111100 000001111 11111122211 10000 011111111
Q ss_pred -----HHHHhcCCHHHHHHHHHHHHHCC---CC----CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHH
Q 038748 321 -----SLYCYSNETGAAMKLLDEMVYNG---AF----PDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRA 388 (482)
Q Consensus 321 -----~~~~~~~~~~~a~~~~~~m~~~g---~~----p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 388 (482)
.++...-...+....|+.-...- ++ ++..+|+.-+.--...|+.+.+.-+|+...-- +..=...|-.
T Consensus 258 ~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWik 336 (577)
T KOG1258|consen 258 VSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIK 336 (577)
T ss_pred HHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHH
Confidence 11222222233333333333321 22 34567888888888999999999999887542 1112234555
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHH-hcCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHh
Q 038748 389 AVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLC-DMHMLPEAVKYAKGMAEKGIQVTP-FALSKLKQILIKA 466 (482)
Q Consensus 389 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~l~~~~~~~ 466 (482)
.++.....|+.+-|..++....+--+ |+......+-..+. ..|++..|..+++.+.+.- |+. ..-..-+....+.
T Consensus 337 y~~~m~~~~~~~~~~~~~~~~~~i~~-k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~ 413 (577)
T KOG1258|consen 337 YARWMESSGDVSLANNVLARACKIHV-KKTPIIHLLEARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRK 413 (577)
T ss_pred HHHHHHHcCchhHHHHHHHhhhhhcC-CCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHh
Confidence 56666666999999888877665432 33222223333333 4689999999999997664 443 2333344566677
Q ss_pred ccHHHHH
Q 038748 467 RKEAVYE 473 (482)
Q Consensus 467 g~~~~a~ 473 (482)
|+.+.+.
T Consensus 414 ~~~~~~~ 420 (577)
T KOG1258|consen 414 GNLEDAN 420 (577)
T ss_pred cchhhhh
Confidence 7777776
No 250
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.22 E-value=1.7 Score=37.07 Aligned_cols=52 Identities=8% Similarity=0.074 Sum_probs=28.5
Q ss_pred hCCCcHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHhhCChhhHHHHHHHHHhc
Q 038748 113 KNCLFDAMWDAIKSMKKENV---LSLATFASVFSSYVVADRVKDAITTFDVMEQY 164 (482)
Q Consensus 113 ~~~~~~~a~~~~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 164 (482)
+.|++++|.+.|+.+..+.+ -...+.-.++.++.+.+++++|+..+++....
T Consensus 46 ~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 46 QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 44556666666666555543 13444445555555556666666666555544
No 251
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.12 E-value=0.082 Score=31.44 Aligned_cols=38 Identities=8% Similarity=0.011 Sum_probs=20.0
Q ss_pred hHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHH
Q 038748 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFAS 140 (482)
Q Consensus 103 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 140 (482)
+|..+...|...|++++|.++|+++.+..+.+...+..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~ 40 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRA 40 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHH
Confidence 34455555555555555555555555555544444443
No 252
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.12 E-value=2.2 Score=40.13 Aligned_cols=78 Identities=9% Similarity=-0.072 Sum_probs=53.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHhhHHHHHHH
Q 038748 280 FKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGA-FPDIQTYNILFEF 357 (482)
Q Consensus 280 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~~~~~ll~~ 357 (482)
-..+..++.+.|+.++|.+.+.++.+.....-...+...|+.++...+.+.++..++.+-.+... +.-...|+..+--
T Consensus 262 KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLk 340 (539)
T PF04184_consen 262 KRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLK 340 (539)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHH
Confidence 34456667788999999999999975543223445777889999999999999999888654322 2223456665543
No 253
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.12 E-value=1 Score=44.87 Aligned_cols=245 Identities=11% Similarity=0.094 Sum_probs=124.5
Q ss_pred HHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHH----HhcCChHhHHHHHHHhhCCCCCCHHHHHHHHH
Q 038748 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAI----CRDGKTIDAWQFLRVVDGRIKPDNDTYAILLE 212 (482)
Q Consensus 137 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~----~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 212 (482)
....-+..+.+...++.|+.+-+.- + .|..+...+...| .+.|++++|...|-+-...+.|. .++.
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~---~--~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s-----~Vi~ 405 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQ---H--LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPS-----EVIK 405 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhc---C--CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChH-----HHHH
Confidence 3445566666666676666654432 2 2333333444333 35677777776665544334443 2344
Q ss_pred HHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 038748 213 GWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQN 292 (482)
Q Consensus 213 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 292 (482)
-|.....+.+-..+++.+.++ |+.- ...-..|+.+|.+. ++.++..++.+.-- .|.. ..-....+..|.+.+-
T Consensus 406 kfLdaq~IknLt~YLe~L~~~-gla~--~dhttlLLncYiKl-kd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~sny 478 (933)
T KOG2114|consen 406 KFLDAQRIKNLTSYLEALHKK-GLAN--SDHTTLLLNCYIKL-KDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNY 478 (933)
T ss_pred HhcCHHHHHHHHHHHHHHHHc-cccc--chhHHHHHHHHHHh-cchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhCh
Confidence 455555566666666666643 5543 33455667777777 77766666655433 2211 1123455666666666
Q ss_pred hhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 038748 293 LRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFN 372 (482)
Q Consensus 293 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 372 (482)
.++|..+-.... . +......+ +-..+++++|++.+..|.-...-+....|...+- ...+++-.+++-
T Consensus 479 l~~a~~LA~k~~-~-----he~vl~il---le~~~ny~eAl~yi~slp~~e~l~~l~kyGk~Ll----~h~P~~t~~ili 545 (933)
T KOG2114|consen 479 LDEAELLATKFK-K-----HEWVLDIL---LEDLHNYEEALRYISSLPISELLRTLNKYGKILL----EHDPEETMKILI 545 (933)
T ss_pred HHHHHHHHHHhc-c-----CHHHHHHH---HHHhcCHHHHHHHHhcCCHHHHHHHHHHHHHHHH----hhChHHHHHHHH
Confidence 666666654441 1 22222222 3445677888877766532212222233332221 234566666665
Q ss_pred HHHhCCCccChhhHHHH-----HHHHhcCCChHHHHHHHHHHHH
Q 038748 373 EMVKNENVLNHENCRAA-----VRVYMDSDDPYVAIKFWKYMIE 411 (482)
Q Consensus 373 ~~~~~~~~~~~~~~~~l-----i~~~~~~~~~~~a~~~~~~m~~ 411 (482)
+.......++....... -..+.-.+++..-..+++.|.+
T Consensus 546 ~~~t~~~~~~~~~~~s~~~~~~~~i~if~~~~~~~~~Fl~~~~E 589 (933)
T KOG2114|consen 546 ELITELNSQGKGKSLSNIPDSIEFIGIFSQNYQILLNFLESMSE 589 (933)
T ss_pred HHHhhcCCCCCCchhhcCccchhheeeeccCHHHHHHHHHHHHh
Confidence 55544332222222222 1223345667776667776664
No 254
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.10 E-value=1.1 Score=34.66 Aligned_cols=84 Identities=6% Similarity=0.040 Sum_probs=61.0
Q ss_pred hhHHHHHHHHhhCCCcHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHH
Q 038748 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENV---LSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLS 178 (482)
Q Consensus 102 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 178 (482)
..+-.-.....+.|++++|.+.|+.+..+.+ -...+.-.++.+|.+.+++++|...+++.++....--..-|-..+.
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~ 90 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMR 90 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHH
Confidence 3333444555677999999999999998875 3567788889999999999999999999988754333345666666
Q ss_pred HHHhcCC
Q 038748 179 AICRDGK 185 (482)
Q Consensus 179 ~~~~~g~ 185 (482)
+++....
T Consensus 91 gL~~~~~ 97 (142)
T PF13512_consen 91 GLSYYEQ 97 (142)
T ss_pred HHHHHHH
Confidence 6655433
No 255
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.00 E-value=3 Score=38.69 Aligned_cols=386 Identities=8% Similarity=0.012 Sum_probs=195.9
Q ss_pred cCCCCCHHHHHHHHHhhcCCchhHhHHhh-hhhcCCCCCC------------CHhhHHHHHHHHhhCCCcHHHHHHHHHH
Q 038748 61 TLIRVSQETVEQVLKFSYSHPGPAVKFFR-WSAYQLNDKH------------SPYAWNLVVDLLGKNCLFDAMWDAIKSM 127 (482)
Q Consensus 61 ~~~~~~~~~~~~ll~~~~~~~~~a~~~~~-~~~~~~~~~~------------~~~~~~~li~~~~~~~~~~~a~~~~~~~ 127 (482)
.|..+--..+..++....++.+.|++.+. |-....+..+ |-..=+..++.+...|++.++..+++++
T Consensus 75 ~~~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i 154 (549)
T PF07079_consen 75 FGKSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRI 154 (549)
T ss_pred cCCchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence 44445555666666667788888988887 5444222221 1122344566777899999999999998
Q ss_pred HhcCC-----CCHHHHHHHHHHHHhh--------CChhhHHHHH-------HHHHhc------CCCCCHhhHHHHHHHHH
Q 038748 128 KKENV-----LSLATFASVFSSYVVA--------DRVKDAITTF-------DVMEQY------GCKHDVFALNSLLSAIC 181 (482)
Q Consensus 128 ~~~~~-----~~~~~~~~li~~~~~~--------~~~~~a~~~~-------~~~~~~------~~~~~~~~~~~ll~~~~ 181 (482)
...-. -+..+|+.++-.+.+. ...+-+...| .+|... .+.|.......++.-..
T Consensus 155 ~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlf 234 (549)
T PF07079_consen 155 IERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLF 234 (549)
T ss_pred HHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHH
Confidence 87653 3778888755444332 1222222222 222211 23343333443433322
Q ss_pred hc--CChHhHHHHHHHhhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhHHh--cCCCCCChhhHHHHHHHHHccC
Q 038748 182 RD--GKTIDAWQFLRVVDG-RIKPDN-DTYAILLEGWEKERDVANAKKTFGEMVIE--VGWDPDNVPAYDSYLITLLKGC 255 (482)
Q Consensus 182 ~~--g~~~~a~~~~~~~~~-~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~p~~~~~~~~l~~~~~~~~ 255 (482)
-. ....--.++++.... -+.|+. -+...++..+.. +.+++..+-+.+... ..+...-+.++..++....+.
T Consensus 235 i~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~- 311 (549)
T PF07079_consen 235 IVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQ- 311 (549)
T ss_pred hCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-
Confidence 11 122222333333322 233332 223334443333 333333333222210 001111345677777777777
Q ss_pred CChHHHHHHHHHHHHcC--------CCCCHHHHHHHHH-HHHhcCChhHHHHHHHHhhcccCCCCCHH-HHHHH---HHH
Q 038748 256 DGIYETVNSLKRMMERG--------CNPGMTFFKLAFE-ECLTGQNLRGAEFIWGAMVGRIGFRPDTH-MYNMM---ISL 322 (482)
Q Consensus 256 ~~~~~a~~~~~~m~~~~--------~~~~~~~~~~li~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~l---i~~ 322 (482)
++...|.+.+.-+.... +-....+...++. -=...-+...-..+|.... ...+ |.. ....| ..-
T Consensus 312 ~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~q-s~Di--DrqQLvh~L~~~Ak~ 388 (549)
T PF07079_consen 312 VQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQ-SYDI--DRQQLVHYLVFGAKH 388 (549)
T ss_pred HhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHH-hhcc--cHHHHHHHHHHHHHH
Confidence 77777777766554321 1112222222221 0001112233344444442 3322 211 11112 233
Q ss_pred HHhcCC-HHHHHHHHHHHHHCCCCCCHhhHHHHH----HHHHh---cCCHHHHHHHHHHHHhCCCccChh----hHHHHH
Q 038748 323 YCYSNE-TGAAMKLLDEMVYNGAFPDIQTYNILF----EFLVK---GRKLWEASGLFNEMVKNENVLNHE----NCRAAV 390 (482)
Q Consensus 323 ~~~~~~-~~~a~~~~~~m~~~g~~p~~~~~~~ll----~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~----~~~~li 390 (482)
+.+.|. -++|+++++...+-- .-|...-|.+. .+|.+ ...+.+-..+-+-+.+.|+.|-.. .-|.|.
T Consensus 389 lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~La 467 (549)
T PF07079_consen 389 LWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLA 467 (549)
T ss_pred HHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHH
Confidence 555555 778888888777641 11332222222 23322 234566666666677777765433 333333
Q ss_pred HH--HhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 038748 391 RV--YMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLK 460 (482)
Q Consensus 391 ~~--~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~ 460 (482)
++ +...|++.++.-.-.-+.+ +.|++.+|..+.-++....++++|..++.. ++|+..++++=+
T Consensus 468 DAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~-----LP~n~~~~dskv 532 (549)
T PF07079_consen 468 DAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQK-----LPPNERMRDSKV 532 (549)
T ss_pred HHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHh-----CCCchhhHHHHH
Confidence 32 4467888888766555555 778888998888888888899999998876 456666665533
No 256
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.96 E-value=2 Score=36.49 Aligned_cols=224 Identities=13% Similarity=-0.004 Sum_probs=137.4
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCC--ChhhHHHHHHHHHccCCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCh
Q 038748 217 ERDVANAKKTFGEMVIEVGWDPD--NVPAYDSYLITLLKGCDGIYETVNSLKRMMER-GCNPGMTFFKLAFEECLTGQNL 293 (482)
Q Consensus 217 ~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~ 293 (482)
.+....+...+...... .+. ....+......+... +.+..+...+...... ........+......+...+++
T Consensus 36 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (291)
T COG0457 36 LGELAEALELLEEALEL---LPNSDLAGLLLLLALALLKL-GRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKY 111 (291)
T ss_pred HhhHHHHHHHHHHHHhc---CccccchHHHHHHHHHHHHc-ccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhH
Confidence 45666666666666532 221 234566666777777 8888888888777653 2334555666667777777888
Q ss_pred hHHHHHHHHhhcccCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHCCC--CCCHhhHHHHHHHHHhcCCHHHHHHH
Q 038748 294 RGAEFIWGAMVGRIGFRPDTHMYNMMIS-LYCYSNETGAAMKLLDEMVYNGA--FPDIQTYNILFEFLVKGRKLWEASGL 370 (482)
Q Consensus 294 ~~a~~~~~~~~~~~~~~~~~~~~~~li~-~~~~~~~~~~a~~~~~~m~~~g~--~p~~~~~~~ll~~~~~~g~~~~a~~~ 370 (482)
..+...+.... .....+ ......... .+...|+++.|...+........ ......+......+...++.+.+...
T Consensus 112 ~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 189 (291)
T COG0457 112 EEALELLEKAL-ALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALEL 189 (291)
T ss_pred HHHHHHHHHHH-cCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHH
Confidence 88888888775 222122 122222222 67778888888888888755211 11223333344445667788888888
Q ss_pred HHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 038748 371 FNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDL-SETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448 (482)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 448 (482)
+....+.........+..+...+...++++.|...+....... |+ ...+..+...+...+..+++...+.+.....
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 190 LEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD--PDNAEALYNLALLLLELGRYEEALEALEKALELD 266 (291)
T ss_pred HHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhC--cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 8887765322135566677777777778888888888777643 32 2334444444446667788887777776554
No 257
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.96 E-value=3.1 Score=38.58 Aligned_cols=142 Identities=11% Similarity=0.060 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhH-HHHH
Q 038748 313 THMYNMMISLYCYSNETGAAMKLLDEMVYNG-AFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENC-RAAV 390 (482)
Q Consensus 313 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~li 390 (482)
..+|...+....+..-++.|..+|-+..+.| +.+++..+++++..++ .|+..-|..+|+--... .||...| +..+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 3467778888888888999999999999998 6788889999998775 56778899999876554 3344443 4566
Q ss_pred HHHhcCCChHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 038748 391 RVYMDSDDPYVAIKFWKYMIENHCSDL--SETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLK 460 (482)
Q Consensus 391 ~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~ 460 (482)
..+...++-+.|..+|+..+++ +.-+ ...|..+|.-=..-|+...+..+-++|.+.- |...+.....
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~--pQen~~evF~ 542 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELV--PQENLIEVFT 542 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHc--CcHhHHHHHH
Confidence 6777889999999999965532 1122 3688999988888899999988888887643 4443433333
No 258
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.81 E-value=0.38 Score=41.94 Aligned_cols=60 Identities=15% Similarity=0.242 Sum_probs=31.1
Q ss_pred hHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHH
Q 038748 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVME 162 (482)
Q Consensus 103 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 162 (482)
++..++..+...|+++.+.+.++++....+-+...|..+|.+|.+.|+...|+..|+.+.
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 334444444445555555555555555555555555555555555555555555555443
No 259
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.76 E-value=4.4 Score=42.41 Aligned_cols=24 Identities=21% Similarity=0.250 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHH
Q 038748 454 FALSKLKQILIKARKEAVYEELLK 477 (482)
Q Consensus 454 ~~~~~l~~~~~~~g~~~~a~~~~~ 477 (482)
.....|+.++...|..+.|.++-+
T Consensus 1185 ~E~~~Ll~~l~~~g~~eqa~~Lq~ 1208 (1265)
T KOG1920|consen 1185 NELKRLLEVLVTFGMDEQARALQK 1208 (1265)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHH
Confidence 345567777777777776665543
No 260
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.70 E-value=2.9 Score=37.11 Aligned_cols=152 Identities=8% Similarity=-0.074 Sum_probs=108.7
Q ss_pred hhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCH----hhHHHHHHHHHhcCChH
Q 038748 112 GKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDV----FALNSLLSAICRDGKTI 187 (482)
Q Consensus 112 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~g~~~ 187 (482)
-.+|++.+|-..++++.+..+.+.-++...=.+|...|+...-...++++... -.+|. +.-....-++...|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 34678888888899999888878888888888899999988888888888764 12333 22233334556789999
Q ss_pred hHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCC---hhhHHHHHHHHHccCCChHHHHHH
Q 038748 188 DAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDN---VPAYDSYLITLLKGCDGIYETVNS 264 (482)
Q Consensus 188 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~---~~~~~~l~~~~~~~~~~~~~a~~~ 264 (482)
+|++.-++..+-.+.|...-.+..+.+-..|+..++.++..+-.. .+.-.. ..-|-.....++.. +.++.|+++
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted--~Wr~s~mlasHNyWH~Al~~iE~-aeye~aleI 269 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTED--DWRQSWMLASHNYWHTALFHIEG-AEYEKALEI 269 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhccc--chhhhhHHHhhhhHHHHHhhhcc-cchhHHHHH
Confidence 999888887666677888888888888889999999887766542 111100 11233334455666 889999999
Q ss_pred HHH
Q 038748 265 LKR 267 (482)
Q Consensus 265 ~~~ 267 (482)
|+.
T Consensus 270 yD~ 272 (491)
T KOG2610|consen 270 YDR 272 (491)
T ss_pred HHH
Confidence 874
No 261
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.67 E-value=1.2 Score=34.44 Aligned_cols=53 Identities=17% Similarity=0.181 Sum_probs=30.7
Q ss_pred HHhcCChHhHHHHHHHhhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHhHH
Q 038748 180 ICRDGKTIDAWQFLRVVDGRIKP---DNDTYAILLEGWEKERDVANAKKTFGEMVI 232 (482)
Q Consensus 180 ~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 232 (482)
..+.|++++|.+.|+.+....+. ....-..++.+|.+.+++++|...+++.++
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir 75 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR 75 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34556666666666666553332 233445566666666666666666666654
No 262
>PRK11906 transcriptional regulator; Provisional
Probab=94.65 E-value=3 Score=39.04 Aligned_cols=133 Identities=8% Similarity=0.026 Sum_probs=65.7
Q ss_pred HHH--HHHHHHHHhc-----CCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccC--------CChHHHHHHHHHHH
Q 038748 205 DTY--AILLEGWEKE-----RDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC--------DGIYETVNSLKRMM 269 (482)
Q Consensus 205 ~~~--~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~--------~~~~~a~~~~~~m~ 269 (482)
..| ..++.+.... ...+.|..+|.+......++|+...+|..+..++.... ....+|.++-+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 455 5555555442 23567788888887555778876766666655554430 12233344444444
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038748 270 ERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD-THMYNMMISLYCYSNETGAAMKLLDEMVY 341 (482)
Q Consensus 270 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 341 (482)
+.+ +-|......+..+..-.++++.|...|++.. .+.|| ..+|........-+|+.++|.+.+++..+
T Consensus 332 eld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~---~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 332 DIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAK---IHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred hcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHh---hcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 332 2244444444444444555555555555553 22333 22222222223334555555555555433
No 263
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.45 E-value=4.1 Score=37.67 Aligned_cols=66 Identities=12% Similarity=0.014 Sum_probs=43.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038748 312 DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFP---DIQTYNILFEFLVKGRKLWEASGLFNEMVKN 377 (482)
Q Consensus 312 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 377 (482)
...+|..++..+.+.|+++.|...+..+...+... +......-+..+-..|+..+|...++...+.
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45567777777888888888888888777643211 2233333445556677778888887777763
No 264
>PRK11906 transcriptional regulator; Provisional
Probab=94.43 E-value=4.4 Score=38.02 Aligned_cols=129 Identities=6% Similarity=-0.038 Sum_probs=68.2
Q ss_pred hhH--HHHHHHHhhC-----CCcHHHHHHHHHHH---hcCCCCHHHHHHHHHHHHhh---------CChhhHHHHHHHHH
Q 038748 102 YAW--NLVVDLLGKN-----CLFDAMWDAIKSMK---KENVLSLATFASVFSSYVVA---------DRVKDAITTFDVME 162 (482)
Q Consensus 102 ~~~--~~li~~~~~~-----~~~~~a~~~~~~~~---~~~~~~~~~~~~li~~~~~~---------~~~~~a~~~~~~~~ 162 (482)
..| ..++.+.... ...+.|..+|.+.. ..++.....|..+..++... ....+|.+.-+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 455 5555555442 13456777888877 44443455565555554332 22344555555555
Q ss_pred hcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 038748 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMV 231 (482)
Q Consensus 163 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 231 (482)
+.+. -|......+..+..-.++++.|..+|++...-.+....+|....-.+.-.|+.++|.+.+++..
T Consensus 332 eld~-~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~al 399 (458)
T PRK11906 332 DITT-VDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSL 399 (458)
T ss_pred hcCC-CCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 5442 3555555555555555666666666666444333334444444444445566666666666543
No 265
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.16 E-value=2.4 Score=33.80 Aligned_cols=139 Identities=17% Similarity=0.107 Sum_probs=65.5
Q ss_pred hhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhh-HHHH--
Q 038748 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSL--ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFA-LNSL-- 176 (482)
Q Consensus 102 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l-- 176 (482)
..|..-+. +++.+..++|+.-|..+.+.|.-+- -..-.......+.|+...|...|+++-.....|-..- .--|
T Consensus 60 d~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlra 138 (221)
T COG4649 60 DAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRA 138 (221)
T ss_pred HHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHH
Confidence 34444333 2344556666666666666554221 1112222334455666666666666654332232221 1111
Q ss_pred HHHHHhcCChHhHHHHHHHhhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChh
Q 038748 177 LSAICRDGKTIDAWQFLRVVDG-RIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVP 242 (482)
Q Consensus 177 l~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~ 242 (482)
.-.+...|.++....-.+-+.. +.+--...-..|.-+-.+.|++.+|.++|..+... ...|.++.
T Consensus 139 a~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D-a~aprnir 204 (221)
T COG4649 139 AYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND-AQAPRNIR 204 (221)
T ss_pred HHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc-ccCcHHHH
Confidence 1123455666666555555432 22333334445555555666666666666666543 34444433
No 266
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.14 E-value=1.9 Score=38.67 Aligned_cols=45 Identities=4% Similarity=0.009 Sum_probs=23.2
Q ss_pred hhCCCcHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHhhCChhhHHH
Q 038748 112 GKNCLFDAMWDAIKSMKKENV---LSLATFASVFSSYVVADRVKDAIT 156 (482)
Q Consensus 112 ~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~ 156 (482)
..+.+.++|+..|..-..+-- .-..+|..+..+.++.|.+++++.
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~ 64 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLK 64 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHH
Confidence 345556666666655444321 123445555666666666555544
No 267
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=94.05 E-value=7.3 Score=39.11 Aligned_cols=59 Identities=5% Similarity=0.045 Sum_probs=37.2
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCC-------hhhHHHHHHHHHhc
Q 038748 106 LVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADR-------VKDAITTFDVMEQY 164 (482)
Q Consensus 106 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-------~~~a~~~~~~~~~~ 164 (482)
.+|-.|.+.|++++|.++..+...........+...+..|....+ -+....-|+...+.
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~ 181 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRN 181 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 456778889999999998866665544445567777777766532 23445555555544
No 268
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.98 E-value=4.3 Score=36.11 Aligned_cols=16 Identities=13% Similarity=0.088 Sum_probs=10.7
Q ss_pred HHhcCChhHHHHHHHH
Q 038748 428 LCDMHMLPEAVKYAKG 443 (482)
Q Consensus 428 ~~~~g~~~~A~~~~~~ 443 (482)
+.+.+++++|.++|+-
T Consensus 256 ~~~~k~y~~A~~w~~~ 271 (278)
T PF08631_consen 256 HYKAKNYDEAIEWYEL 271 (278)
T ss_pred HHhhcCHHHHHHHHHH
Confidence 4456777777777764
No 269
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.96 E-value=0.74 Score=40.21 Aligned_cols=59 Identities=10% Similarity=0.135 Sum_probs=27.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHH
Q 038748 351 YNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMI 410 (482)
Q Consensus 351 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 410 (482)
+..++..+...|+.+.+...++++...... +...|..++.+|.+.|+...|+..|+.+.
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 334444444444444444444444443322 44444444555555555444444444443
No 270
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.92 E-value=9.7 Score=40.04 Aligned_cols=112 Identities=14% Similarity=0.089 Sum_probs=64.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHh
Q 038748 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYM 394 (482)
Q Consensus 315 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 394 (482)
.|.+....+.....+++|--.|+..-+ ....+.+|..+|+|.+|+.+...+....-. -..+-..|+.-+.
T Consensus 941 i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~~de-~~~~a~~L~s~L~ 1010 (1265)
T KOG1920|consen 941 IYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEGKDE-LVILAEELVSRLV 1010 (1265)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCCHHH-HHHHHHHHHHHHH
Confidence 344444445556667776666654322 133456677778888887777766432111 1112245666777
Q ss_pred cCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 038748 395 DSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGM 444 (482)
Q Consensus 395 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 444 (482)
..+++-+|-++..+.... ..-.+..|++...|++|.++....
T Consensus 1011 e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1011 EQRKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HcccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHhc
Confidence 778877777777665431 123345566777777777766544
No 271
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.84 E-value=3.6 Score=34.84 Aligned_cols=53 Identities=25% Similarity=0.152 Sum_probs=22.4
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHcC---CCCChhhHHHHHHHHHhcCChhHHHHHH
Q 038748 388 AAVRVYMDSDDPYVAIKFWKYMIENH---CSDLSETGNLLVAGLCDMHMLPEAVKYA 441 (482)
Q Consensus 388 ~li~~~~~~~~~~~a~~~~~~m~~~~---~~p~~~~~~~li~~~~~~g~~~~A~~~~ 441 (482)
..|-.|.-..++..|.+.++.--..+ -.-+..+...|+.+| ..|+.+++.+++
T Consensus 195 a~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 195 AAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 33334444455555555555433211 111224444455444 234444444433
No 272
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.75 E-value=2.3 Score=32.17 Aligned_cols=141 Identities=12% Similarity=0.095 Sum_probs=83.3
Q ss_pred HHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 038748 214 WEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNL 293 (482)
Q Consensus 214 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 293 (482)
..-.|.+++..++..+.... .+..-+|-++...... -+-+-..+.++.+-+. .|.. ..|++
T Consensus 12 ~ildG~V~qGveii~k~v~S-----sni~E~NWvICNiiDa-a~C~yvv~~LdsIGki---FDis----------~C~Nl 72 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS-----SNIKEYNWVICNIIDA-ADCDYVVETLDSIGKI---FDIS----------KCGNL 72 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH-----S-HHHHTHHHHHHHHH---HHHHHHHHHHHGGG---S-GG----------G-S-T
T ss_pred HHHhchHHHHHHHHHHHcCc-----CCccccceeeeecchh-hchhHHHHHHHHHhhh---cCch----------hhcch
Confidence 34567788888887777643 2556677777777666 5555555555554332 1211 22344
Q ss_pred hHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 038748 294 RGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNE 373 (482)
Q Consensus 294 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 373 (482)
......+..+ ..+......-+..+...|+-+.-.+++.++.+. -.+++.....+..+|.+.|+..++.+++.+
T Consensus 73 KrVi~C~~~~------n~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ 145 (161)
T PF09205_consen 73 KRVIECYAKR------NKLSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKE 145 (161)
T ss_dssp HHHHHHHHHT------T---HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHh------cchHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 4444444333 123444566677788888888888888887752 356778888888999999999999999999
Q ss_pred HHhCCCc
Q 038748 374 MVKNENV 380 (482)
Q Consensus 374 ~~~~~~~ 380 (482)
.-+.|++
T Consensus 146 ACekG~k 152 (161)
T PF09205_consen 146 ACEKGLK 152 (161)
T ss_dssp HHHTT-H
T ss_pred HHHhchH
Confidence 8888765
No 273
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.42 E-value=7.2 Score=36.92 Aligned_cols=55 Identities=13% Similarity=0.007 Sum_probs=24.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCc-cChhhHHHHHHHHhcCCChHHHHHHHHHH
Q 038748 355 FEFLVKGRKLWEASGLFNEMVKNENV-LNHENCRAAVRVYMDSDDPYVAIKFWKYM 409 (482)
Q Consensus 355 l~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m 409 (482)
..++-+.|+.++|.+.+++|.+.... -+......|+.++...+.+.++..++.+.
T Consensus 266 AmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 266 AMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 33334445555555555555433211 12223334555555555555555555444
No 274
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=93.36 E-value=4 Score=33.88 Aligned_cols=65 Identities=18% Similarity=0.063 Sum_probs=43.4
Q ss_pred CHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhc
Q 038748 100 SPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQY 164 (482)
Q Consensus 100 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 164 (482)
-+.+||.+.-.+...|+++.|.+.|+...+.++....+...-.-++.-.|++..|.+-|...-+.
T Consensus 98 m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~ 162 (297)
T COG4785 98 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD 162 (297)
T ss_pred cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhc
Confidence 35778888888888888888888888888877643333322222334457888887766666554
No 275
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.35 E-value=2.1 Score=32.24 Aligned_cols=90 Identities=12% Similarity=-0.084 Sum_probs=50.0
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCh---hhHHHHHHHHHhcCCh
Q 038748 358 LVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLS---ETGNLLVAGLCDMHML 434 (482)
Q Consensus 358 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~ 434 (482)
+...|+++.|++.|...+..-++ ....||.-..++--.|+.++|++-+++..+..-.-.. ..|..-...|...|+.
T Consensus 53 laE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 45566666666666666554322 4556666666666666666666666666543111111 1222223345556777
Q ss_pred hHHHHHHHHHHHcC
Q 038748 435 PEAVKYAKGMAEKG 448 (482)
Q Consensus 435 ~~A~~~~~~m~~~~ 448 (482)
+.|..-|+..-+.|
T Consensus 132 d~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 132 DAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhHHHHHHhC
Confidence 77777666666555
No 276
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.31 E-value=4.5 Score=34.29 Aligned_cols=87 Identities=8% Similarity=0.018 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 038748 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGW 214 (482)
Q Consensus 135 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 214 (482)
...|.....+|-...++++|...+.+..+. .+.+...|.+ ...++.|.-+.+++.. +.--+..|+-....|
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfhA-------AKayEqaamLake~~k-lsEvvdl~eKAs~lY 101 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFHA-------AKAYEQAAMLAKELSK-LSEVVDLYEKASELY 101 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHHH-------HHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHH
Confidence 344555556666666666666665555431 1112222211 1123333333333332 111123344555566
Q ss_pred HhcCCHHHHHHHHHHh
Q 038748 215 EKERDVANAKKTFGEM 230 (482)
Q Consensus 215 ~~~~~~~~a~~~~~~~ 230 (482)
..+|..+.|-..+++.
T Consensus 102 ~E~GspdtAAmaleKA 117 (308)
T KOG1585|consen 102 VECGSPDTAAMALEKA 117 (308)
T ss_pred HHhCCcchHHHHHHHH
Confidence 6666666665555544
No 277
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.29 E-value=1.8 Score=37.91 Aligned_cols=48 Identities=4% Similarity=-0.076 Sum_probs=24.2
Q ss_pred CHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHH
Q 038748 363 KLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMI 410 (482)
Q Consensus 363 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 410 (482)
+.++++.++..=+.-|+-||..+++.+|+.+.+.+++.+|.++...|.
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 344444444444444555555555555555555555555555444444
No 278
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.18 E-value=1.7 Score=35.46 Aligned_cols=62 Identities=10% Similarity=-0.008 Sum_probs=32.5
Q ss_pred hhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHhhCChhhHHHHHHHHHh
Q 038748 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL---SLATFASVFSSYVVADRVKDAITTFDVMEQ 163 (482)
Q Consensus 102 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 163 (482)
..+..+...|.+.|+.+.|++.|.++.+.-.. -...+-.+|+.....+++..+.....+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34555555566666666666666655554321 233444555555555555555555544433
No 279
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.09 E-value=3.7 Score=32.72 Aligned_cols=53 Identities=6% Similarity=0.039 Sum_probs=23.8
Q ss_pred HhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHH
Q 038748 215 EKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMME 270 (482)
Q Consensus 215 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~ 270 (482)
...|.++....-++-+-. .-.|-...+-..|..+.++. |++.+|.++|..+..
T Consensus 143 vD~gsy~dV~srvepLa~--d~n~mR~sArEALglAa~ka-gd~a~A~~~F~qia~ 195 (221)
T COG4649 143 VDNGSYDDVSSRVEPLAG--DGNPMRHSAREALGLAAYKA-GDFAKAKSWFVQIAN 195 (221)
T ss_pred hccccHHHHHHHhhhccC--CCChhHHHHHHHHhHHHHhc-cchHHHHHHHHHHHc
Confidence 344555555544444431 22222233344444444455 555555555555444
No 280
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.05 E-value=1.5 Score=35.72 Aligned_cols=62 Identities=16% Similarity=0.029 Sum_probs=37.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccC--hhhHHHHHHHHhcCCChHHHHHHHHHHH
Q 038748 349 QTYNILFEFLVKGRKLWEASGLFNEMVKNENVLN--HENCRAAVRVYMDSDDPYVAIKFWKYMI 410 (482)
Q Consensus 349 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~ 410 (482)
..+..+...|++.|+.+.|.+.|.++.+....+. ...+..+|+.....+++..+...+.+..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3455666667777777777777777665533322 2234556666666667666666665554
No 281
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=92.91 E-value=2.9 Score=31.55 Aligned_cols=47 Identities=19% Similarity=0.133 Sum_probs=18.5
Q ss_pred HhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHH
Q 038748 146 VVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193 (482)
Q Consensus 146 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 193 (482)
+..|+.+.|++.|.+....- +-....||.-..++--.|+.++|+.=+
T Consensus 54 aE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDL 100 (175)
T KOG4555|consen 54 AEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDL 100 (175)
T ss_pred HhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHH
Confidence 33344444444444443321 113333444444444444444444333
No 282
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=92.87 E-value=0.63 Score=32.73 Aligned_cols=58 Identities=12% Similarity=0.151 Sum_probs=31.7
Q ss_pred hHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHH
Q 038748 153 DAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAIL 210 (482)
Q Consensus 153 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 210 (482)
++.+-++.+....+.|++....+.+++|-+.+|+..|..+|+-++.+...+...|..+
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~ 82 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYI 82 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHH
Confidence 4444555555555566666666666666666666666666665553333333344443
No 283
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.69 E-value=5.5 Score=39.45 Aligned_cols=185 Identities=14% Similarity=-0.017 Sum_probs=110.7
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHH--HH-HHhcCChhHHHHHHHHhhcc------cCCCCCHHHHHHHHHHHHhcC-
Q 038748 258 IYETVNSLKRMMERGCNPGMTFFKLAF--EE-CLTGQNLRGAEFIWGAMVGR------IGFRPDTHMYNMMISLYCYSN- 327 (482)
Q Consensus 258 ~~~a~~~~~~m~~~~~~~~~~~~~~li--~~-~~~~g~~~~a~~~~~~~~~~------~~~~~~~~~~~~li~~~~~~~- 327 (482)
...+.++++...+.|..-. ......+ .. +....+.+.|..+|+.+.+. .+ .......+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a-~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEA-QYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhhcchHH-HHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCC
Confidence 5678888888888773221 1111222 22 34567889999999988531 33 3335566677776643
Q ss_pred ----CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHh--cCCChH
Q 038748 328 ----ETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVK-GRKLWEASGLFNEMVKNENVLNHENCRAAVRVYM--DSDDPY 400 (482)
Q Consensus 328 ----~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~--~~~~~~ 400 (482)
+.+.|..++.+..+.|. |+...+-..+.-... ..+...|.++|......|.. ....+..++.... -..+.+
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~~ 381 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNLE 381 (552)
T ss_pred CccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCHH
Confidence 56779999988888765 354444333322222 24577899999998888754 2222222222222 234688
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 038748 401 VAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQ 450 (482)
Q Consensus 401 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 450 (482)
.|..+++...+.|. |....--..+..+.. ++++.+.-.+..+.+.|.+
T Consensus 382 ~A~~~~k~aA~~g~-~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~ 429 (552)
T KOG1550|consen 382 LAFAYYKKAAEKGN-PSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE 429 (552)
T ss_pred HHHHHHHHHHHccC-hhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh
Confidence 88889988888873 332222222333444 7888888888777777754
No 284
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=92.41 E-value=1.5 Score=31.32 Aligned_cols=59 Identities=14% Similarity=0.141 Sum_probs=28.8
Q ss_pred hHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHH
Q 038748 153 DAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILL 211 (482)
Q Consensus 153 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 211 (482)
+..+-++.+....+.|++.+..+.+.+|-+.+++..|..+|+.++....+....|..++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~l 86 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYIL 86 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHH
Confidence 34444555555555666666666666666666666666666655543333222444443
No 285
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.27 E-value=0.35 Score=27.15 Aligned_cols=24 Identities=17% Similarity=-0.028 Sum_probs=16.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHH
Q 038748 421 GNLLVAGLCDMHMLPEAVKYAKGM 444 (482)
Q Consensus 421 ~~~li~~~~~~g~~~~A~~~~~~m 444 (482)
|+.|...|.+.|++++|+++|++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 556667777777777777777764
No 286
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=92.15 E-value=5.2 Score=32.06 Aligned_cols=101 Identities=13% Similarity=0.158 Sum_probs=46.6
Q ss_pred HHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038748 298 FIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKN 377 (482)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 377 (482)
+++..+. +.++.|+...+..+|..+.+.|++.. +..+...++-+|.......+-.+.. ....+.++--+|.+.
T Consensus 15 EYirSl~-~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 15 EYIRSLN-QHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHH-HcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH
Confidence 3444442 45566666666666666666665433 3344444555555544444332222 222233333333221
Q ss_pred CCccChhhHHHHHHHHhcCCChHHHHHHHHHH
Q 038748 378 ENVLNHENCRAAVRVYMDSDDPYVAIKFWKYM 409 (482)
Q Consensus 378 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 409 (482)
= ...+..+++.+...|++-+|.++.+..
T Consensus 88 L----~~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 88 L----GTAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred h----hhhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 0 012334555555566666666655543
No 287
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.82 E-value=1.2 Score=39.05 Aligned_cols=49 Identities=12% Similarity=0.271 Sum_probs=27.1
Q ss_pred ChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038748 292 NLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVY 341 (482)
Q Consensus 292 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 341 (482)
+.++++.++..=+ +.|+-||..+++.+|+.+.+.+++.+|..+.-.|..
T Consensus 115 ~pq~~i~~l~npI-qYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 115 DPQKAIYTLVNPI-QYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred ChHHHHHHHhCcc-hhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 3445555555544 555566666666666666666665555555544443
No 288
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=91.56 E-value=8.9 Score=33.53 Aligned_cols=71 Identities=21% Similarity=0.213 Sum_probs=49.0
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH-----HcCCCCCHHHHH
Q 038748 386 CRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMA-----EKGIQVTPFALS 457 (482)
Q Consensus 386 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~~~~~~~~~~~ 457 (482)
++.....|..+|.+.+|.++.+.....+ +.+...|-.|+..+...|+--.|.+-++++. +.|+..+..+++
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsiee 357 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIEE 357 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHHH
Confidence 3445567778888888888888777654 3455677777888888888777777776663 346666655543
No 289
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=91.26 E-value=15 Score=35.62 Aligned_cols=84 Identities=14% Similarity=0.079 Sum_probs=66.4
Q ss_pred CCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhh-CCCcHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHhhCChhhH
Q 038748 79 SHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGK-NCLFDAMWDAIKSMKKEN---VLSLATFASVFSSYVVADRVKDA 154 (482)
Q Consensus 79 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~a~~~~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a 154 (482)
|..+.+.++|+.-.. +.+.+...|...+..++. .|+.+.....|+...... ..+...|...|.--..++++...
T Consensus 93 g~~~~s~~Vfergv~--aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v 170 (577)
T KOG1258|consen 93 GNAENSVKVFERGVQ--AIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRV 170 (577)
T ss_pred hhHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHH
Confidence 556778888887766 788888888888877665 577788888888877653 35777888888888888899999
Q ss_pred HHHHHHHHhc
Q 038748 155 ITTFDVMEQY 164 (482)
Q Consensus 155 ~~~~~~~~~~ 164 (482)
..+++..++.
T Consensus 171 ~~iyeRilei 180 (577)
T KOG1258|consen 171 ANIYERILEI 180 (577)
T ss_pred HHHHHHHHhh
Confidence 9999998873
No 290
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.09 E-value=0.51 Score=26.46 Aligned_cols=26 Identities=12% Similarity=0.141 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhH
Q 038748 206 TYAILLEGWEKERDVANAKKTFGEMV 231 (482)
Q Consensus 206 ~~~~l~~~~~~~~~~~~a~~~~~~~~ 231 (482)
+|..|...|.+.|++++|..+|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36677777788888888888777743
No 291
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=91.07 E-value=0.3 Score=27.05 Aligned_cols=27 Identities=11% Similarity=0.148 Sum_probs=12.4
Q ss_pred HhcCCCCHHHHHHHHHHHHhhCChhhH
Q 038748 128 KKENVLSLATFASVFSSYVVADRVKDA 154 (482)
Q Consensus 128 ~~~~~~~~~~~~~li~~~~~~~~~~~a 154 (482)
.+.++.+..+|+.+...|...|++++|
T Consensus 6 ie~~P~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 6 IELNPNNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred HHHCCCCHHHHHHHHHHHHHCcCHHhh
Confidence 333344444444444444444444444
No 292
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.99 E-value=10 Score=33.27 Aligned_cols=52 Identities=15% Similarity=0.068 Sum_probs=25.8
Q ss_pred HHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhh
Q 038748 145 YVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVD 197 (482)
Q Consensus 145 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 197 (482)
....|++.+|..+|......... +...--.+..+|...|+.+.|..++..+.
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP 195 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALP 195 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence 34455555555555555443221 23334445555555555555555555543
No 293
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=90.44 E-value=1.9 Score=30.44 Aligned_cols=62 Identities=15% Similarity=0.214 Sum_probs=44.8
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHH
Q 038748 257 GIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMI 320 (482)
Q Consensus 257 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li 320 (482)
+.-++.+-++.+....+.|+.....+.+++|.+.+++..|.++|+.+..+. ..+...|..++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~--~~~~~~y~~~l 83 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC--GAHKEIYPYIL 83 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc--cCchhhHHHHH
Confidence 455666677777777888888888888999999999999999888773232 22444565554
No 294
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=90.38 E-value=8 Score=30.99 Aligned_cols=136 Identities=13% Similarity=0.153 Sum_probs=86.6
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038748 262 VNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVY 341 (482)
Q Consensus 262 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 341 (482)
++.++.+.+.+++|+...+..+++.+.+.|++....+++. .++-+|.......+-.+. +....+.++=-+|..
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq-----~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLk 86 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQ-----YHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLK 86 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHh-----hcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHH
Confidence 4555667778899999999999999999998876666554 344566555444443332 233444444444444
Q ss_pred CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 038748 342 NGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIEN 412 (482)
Q Consensus 342 ~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 412 (482)
. -...+..+++.+...|++-+|..+.+..... +......++.+-.+.+|...-..+++-..+.
T Consensus 87 R----L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 87 R----LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred H----hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2 1124566778888999999999988775332 2223345677777777766666666655543
No 295
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=90.21 E-value=16 Score=34.44 Aligned_cols=203 Identities=11% Similarity=-0.001 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHH
Q 038748 274 NPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNI 353 (482)
Q Consensus 274 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 353 (482)
.|...-...-|.--...|++-.|-+-+...+....-.|+.....+.| +...|+++.+...+...... +.....+..+
T Consensus 286 ~~~~~~~~~si~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~ 362 (831)
T PRK15180 286 QDQIREITLSITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKI-IGTTDSTLRC 362 (831)
T ss_pred CcchhHHHHHHHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhh-hcCCchHHHH
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 038748 354 LFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHM 433 (482)
Q Consensus 354 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 433 (482)
+++...+.|++++|..+-..|....++ +..........--..|-++++...|+++.... +|...-|-.++..-.--++
T Consensus 363 ~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~-~~~~~g~v~~~~~~~~~~~ 440 (831)
T PRK15180 363 RLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN-PETQSGWVNFLSSTQYFND 440 (831)
T ss_pred HHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC-ChhcccceeeeccceeccC
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHhhC
Q 038748 434 LPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKCKAH 482 (482)
Q Consensus 434 ~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 482 (482)
...--+.|..-+... ..+.......+....+-.+.--....++++.+|
T Consensus 441 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (831)
T PRK15180 441 GNAFSEAFHAGIQSQ-RLNDTFMETALSLAIKFSDELIFMHALEQLLRH 488 (831)
T ss_pred cchHHHHHHhhhhhh-hhhHHHHHHHHHHHHhccHHHHHHHHHHHHHhh
No 296
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=90.03 E-value=0.14 Score=40.25 Aligned_cols=84 Identities=13% Similarity=0.057 Sum_probs=58.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 038748 354 LFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHM 433 (482)
Q Consensus 354 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 433 (482)
++..+.+.+.++....+++.+...+...+....+.++..|++.+..++..++++. .+..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcch
Confidence 5666677778888888888888766556677888888888888777777777661 111233456677777888
Q ss_pred hhHHHHHHHHH
Q 038748 434 LPEAVKYAKGM 444 (482)
Q Consensus 434 ~~~A~~~~~~m 444 (482)
+++|.-++.++
T Consensus 86 ~~~a~~Ly~~~ 96 (143)
T PF00637_consen 86 YEEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHc
Confidence 88888887765
No 297
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.75 E-value=8.7 Score=30.42 Aligned_cols=50 Identities=16% Similarity=-0.088 Sum_probs=23.0
Q ss_pred hcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 038748 182 RDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMV 231 (482)
Q Consensus 182 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 231 (482)
+.++.+.+..++.-+.---+-....-..-...+...|+|.+|.++|+++.
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~ 71 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELE 71 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 44555566555555443111111111112233455666666666666654
No 298
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=89.74 E-value=19 Score=34.32 Aligned_cols=169 Identities=12% Similarity=0.093 Sum_probs=91.3
Q ss_pred CCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHH
Q 038748 96 NDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNS 175 (482)
Q Consensus 96 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 175 (482)
....|....-+++..++.+..+.-...+-.+|..-| .+...|..++++|... ..+.-..+++++.+..+. |++.-..
T Consensus 61 ~~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~Re 137 (711)
T COG1747 61 KQLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRE 137 (711)
T ss_pred hccccchHHHHHHHHhccchHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHH
Confidence 344566666777777777777777777777777655 3445577777777776 456666777777665432 3333333
Q ss_pred HHHHHHhcCChHhHHHHHHHhhCCCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHH
Q 038748 176 LLSAICRDGKTIDAWQFLRVVDGRIKP------DNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLI 249 (482)
Q Consensus 176 ll~~~~~~g~~~~a~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~ 249 (482)
|..-| ..++...+..+|..+...+-| -...|.-+...- ..+.+....+...+....|..- -...+.-+-.
T Consensus 138 La~~y-Ekik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~-~~Vl~qdv~~ 213 (711)
T COG1747 138 LADKY-EKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGR-GSVLMQDVYK 213 (711)
T ss_pred HHHHH-HHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccch-HHHHHHHHHH
Confidence 33333 336666666666664332222 112343333321 3445555555555554434333 2233333334
Q ss_pred HHHccCCChHHHHHHHHHHHHcC
Q 038748 250 TLLKGCDGIYETVNSLKRMMERG 272 (482)
Q Consensus 250 ~~~~~~~~~~~a~~~~~~m~~~~ 272 (482)
.|-.. .++++|++++..+.+..
T Consensus 214 ~Ys~~-eN~~eai~Ilk~il~~d 235 (711)
T COG1747 214 KYSEN-ENWTEAIRILKHILEHD 235 (711)
T ss_pred Hhccc-cCHHHHHHHHHHHhhhc
Confidence 44444 66666666666655543
No 299
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=89.67 E-value=2.9 Score=29.92 Aligned_cols=62 Identities=15% Similarity=0.232 Sum_probs=38.9
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHH
Q 038748 257 GIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMI 320 (482)
Q Consensus 257 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li 320 (482)
+.-+..+-++.+....+.|++....+.+.+|.+.+++..|.++|+.+..+.|. ....|..++
T Consensus 25 D~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~--~~~~Y~~~l 86 (108)
T PF02284_consen 25 DGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGN--KKEIYPYIL 86 (108)
T ss_dssp -HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--hHHHHHHHH
Confidence 33455666666777778888888888888888888888888888887433332 222565554
No 300
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=89.41 E-value=12 Score=31.52 Aligned_cols=83 Identities=12% Similarity=-0.016 Sum_probs=41.1
Q ss_pred CChhhHHHHHHHHHhcCCC-CCHhhHHHHHHHHHhcCChHhHHHHHHHhhC--CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 038748 149 DRVKDAITTFDVMEQYGCK-HDVFALNSLLSAICRDGKTIDAWQFLRVVDG--RIKPDNDTYAILLEGWEKERDVANAKK 225 (482)
Q Consensus 149 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~ 225 (482)
+....+...+......... .....+......+...+.+..+...+..... ........+......+...+++..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3444444444444443211 1234455555555566666666555555432 233444455555555555555666666
Q ss_pred HHHHhH
Q 038748 226 TFGEMV 231 (482)
Q Consensus 226 ~~~~~~ 231 (482)
.+....
T Consensus 117 ~~~~~~ 122 (291)
T COG0457 117 LLEKAL 122 (291)
T ss_pred HHHHHH
Confidence 665554
No 301
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.12 E-value=9 Score=29.83 Aligned_cols=53 Identities=2% Similarity=-0.203 Sum_probs=35.1
Q ss_pred hCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcC
Q 038748 113 KNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYG 165 (482)
Q Consensus 113 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 165 (482)
..++++++..+++.|.--.+.....-..-...+...|+|.+|..+|++..+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 47778888888888777655332222223344567788888888888887753
No 302
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=88.72 E-value=4.4 Score=33.40 Aligned_cols=73 Identities=12% Similarity=-0.002 Sum_probs=52.1
Q ss_pred hhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhC----CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 038748 151 VKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDG----RIKPDNDTYAILLEGWEKERDVANAK 224 (482)
Q Consensus 151 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~a~ 224 (482)
=+.|.+.|-.+...+.--++...-.|...|. ..+.+++..++....+ +..+|+..+..|+..|.+.|+++.|-
T Consensus 122 d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 122 DQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred cHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 3677777878877765556555555555555 5678888887766432 34778888999999999888888774
No 303
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=88.37 E-value=24 Score=33.70 Aligned_cols=181 Identities=12% Similarity=0.002 Sum_probs=110.6
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHH
Q 038748 274 NPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNI 353 (482)
Q Consensus 274 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 353 (482)
..|.....+++..++.+....-.+.+..+|+ .. ..+...|..++.+|..+ ..++-..+|+.+.+..+. |.+.-..
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l-~~--~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~Re 137 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVL-EY--GESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRE 137 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHH-Hh--cchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHH
Confidence 3456667777777877777777788877776 32 34666777788888777 556677788877775443 4444444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCcc--C---hhhHHHHHHHHhcCCChHHHHHHHHHHHH-cCCCCChhhHHHHHHH
Q 038748 354 LFEFLVKGRKLWEASGLFNEMVKNENVL--N---HENCRAAVRVYMDSDDPYVAIKFWKYMIE-NHCSDLSETGNLLVAG 427 (482)
Q Consensus 354 ll~~~~~~g~~~~a~~~~~~~~~~~~~~--~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~~~~p~~~~~~~li~~ 427 (482)
|..-|.+ ++.+.+..+|.++...-+.- + ...|.-++... ..+.+....+...+.. .|..--...+.-+..-
T Consensus 138 La~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~ 214 (711)
T COG1747 138 LADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKK 214 (711)
T ss_pred HHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Confidence 4444444 77777888887776542210 1 12344443322 3456666666666553 3433334555566667
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 038748 428 LCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQIL 463 (482)
Q Consensus 428 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~ 463 (482)
|....++++|++++..+.+.+- -|...-..++.-+
T Consensus 215 Ys~~eN~~eai~Ilk~il~~d~-k~~~ar~~~i~~l 249 (711)
T COG1747 215 YSENENWTEAIRILKHILEHDE-KDVWARKEIIENL 249 (711)
T ss_pred hccccCHHHHHHHHHHHhhhcc-hhhhHHHHHHHHH
Confidence 7778888888888887776653 2444444555444
No 304
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=88.17 E-value=3.7 Score=34.14 Aligned_cols=55 Identities=11% Similarity=0.083 Sum_probs=26.9
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHH
Q 038748 107 VVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVM 161 (482)
Q Consensus 107 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 161 (482)
.++.+.+.+...+++....+-.+..+.+...-..+++.++-.|+|++|..-++..
T Consensus 7 t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~ 61 (273)
T COG4455 7 TISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLA 61 (273)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHH
Confidence 3444444555555555554444444444444444555555555555554444443
No 305
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=88.15 E-value=18 Score=31.88 Aligned_cols=135 Identities=16% Similarity=0.153 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHH-CCCCCCHhhHHHHHHHHHh-cC-CHHHHHHHHHHHHhC-CCccChhhHHHHHHHHhcCCChHHHHH
Q 038748 329 TGAAMKLLDEMVY-NGAFPDIQTYNILFEFLVK-GR-KLWEASGLFNEMVKN-ENVLNHENCRAAVRVYMDSDDPYVAIK 404 (482)
Q Consensus 329 ~~~a~~~~~~m~~-~g~~p~~~~~~~ll~~~~~-~g-~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~ 404 (482)
+.+|+.+|+...- ..+--|..+...+++.... .+ ....-.++.+.+... +-.++..+...++..+++.+++.+-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 3455555542211 1233355555555555544 11 222223333333322 345566666677777777777777777
Q ss_pred HHHHHHHc-CCCCChhhHHHHHHHHHhcCChhHHHHHHHHH-----HHcCCCCCHHHHHHHHHHH
Q 038748 405 FWKYMIEN-HCSDLSETGNLLVAGLCDMHMLPEAVKYAKGM-----AEKGIQVTPFALSKLKQIL 463 (482)
Q Consensus 405 ~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-----~~~~~~~~~~~~~~l~~~~ 463 (482)
+|+..... +..-|...|..+|+.....|+..-..++.++- ++.|+..++..-..+-+.+
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF 288 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELF 288 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHH
Confidence 77766644 44556667777777777777776666665542 3445555555554444443
No 306
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=88.14 E-value=57 Score=37.73 Aligned_cols=149 Identities=10% Similarity=0.025 Sum_probs=97.9
Q ss_pred HHHHHHHhhCChhhHHHHHHHH----HhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHH-hhCCCCCCHHHHHHHHHHH
Q 038748 140 SVFSSYVVADRVKDAITTFDVM----EQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRV-VDGRIKPDNDTYAILLEGW 214 (482)
Q Consensus 140 ~li~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~-~~~~~~~~~~~~~~l~~~~ 214 (482)
.+..+-.+.+.+.+|...++.- ++.. .....|-.+...|+..+++|...-+... .. .|+ ...-|...
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~--~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s---l~~qil~~ 1459 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKE--TEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPS---LYQQILEH 1459 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhH--HHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Ccc---HHHHHHHH
Confidence 4455667788899999988883 2211 1233444455589999999988777664 22 122 22334456
Q ss_pred HhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCh
Q 038748 215 EKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMT-FFKLAFEECLTGQNL 293 (482)
Q Consensus 215 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~ 293 (482)
...|++..|...|+.+. +..|+....++-++...... +.++.++-..+-..... .+... .++.-+.+-.+.+++
T Consensus 1460 e~~g~~~da~~Cye~~~---q~~p~~~~~~~g~l~sml~~-~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qw 1534 (2382)
T KOG0890|consen 1460 EASGNWADAAACYERLI---QKDPDKEKHHSGVLKSMLAI-QHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQW 1534 (2382)
T ss_pred HhhccHHHHHHHHHHhh---cCCCccccchhhHHHhhhcc-cchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcch
Confidence 67899999999999996 56887777888888888888 88888877655544432 22222 223334555677888
Q ss_pred hHHHHHHH
Q 038748 294 RGAEFIWG 301 (482)
Q Consensus 294 ~~a~~~~~ 301 (482)
+..+..+.
T Consensus 1535 D~~e~~l~ 1542 (2382)
T KOG0890|consen 1535 DLLESYLS 1542 (2382)
T ss_pred hhhhhhhh
Confidence 77776655
No 307
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=87.90 E-value=0.25 Score=38.72 Aligned_cols=129 Identities=16% Similarity=0.166 Sum_probs=86.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCC
Q 038748 318 MMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSD 397 (482)
Q Consensus 318 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 397 (482)
.+|..+.+.+.++....+++.+...+..-+....+.++..|++.+..++...+++.. +..-...+++.|.+.|
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHG 84 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcc
Confidence 367778888999999999999998776677889999999999998888888887721 1122346778888888
Q ss_pred ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcc
Q 038748 398 DPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARK 468 (482)
Q Consensus 398 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 468 (482)
-+++|.-++..+....- .+..+...++++.|.+++.+. .++..|..++..+...+.
T Consensus 85 l~~~a~~Ly~~~~~~~~---------al~i~~~~~~~~~a~e~~~~~------~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 85 LYEEAVYLYSKLGNHDE---------ALEILHKLKDYEEAIEYAKKV------DDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp SHHHHHHHHHCCTTHTT---------CSSTSSSTHCSCCCTTTGGGC------SSSHHHHHHHHHHCTSTC
T ss_pred hHHHHHHHHHHcccHHH---------HHHHHHHHccHHHHHHHHHhc------CcHHHHHHHHHHHHhcCc
Confidence 88888877766432211 111133445666666444332 457788888877765544
No 308
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=87.83 E-value=33 Score=34.66 Aligned_cols=188 Identities=10% Similarity=0.028 Sum_probs=0.0
Q ss_pred hhHHHHHHHHhhcccCCCC--CHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHCCCCCCH-----hhHHHHHHHHHhcCCH
Q 038748 293 LRGAEFIWGAMVGRIGFRP--DTHMYNMMISLYC-YSNETGAAMKLLDEMVYNGAFPDI-----QTYNILFEFLVKGRKL 364 (482)
Q Consensus 293 ~~~a~~~~~~~~~~~~~~~--~~~~~~~li~~~~-~~~~~~~a~~~~~~m~~~g~~p~~-----~~~~~ll~~~~~~g~~ 364 (482)
+..|.+.++.+.++..+.| +..++-.+...+. ...+++.|+..+.+....--.++. ..-..++..+.+.+..
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~ 116 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK 116 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Q ss_pred HHHHHHHHHHHhC----CCccChhhHHHH-HHHHhcCCChHHHHHHHHHHHHcC---CCCChhhHHHHHHHHH--hcCCh
Q 038748 365 WEASGLFNEMVKN----ENVLNHENCRAA-VRVYMDSDDPYVAIKFWKYMIENH---CSDLSETGNLLVAGLC--DMHML 434 (482)
Q Consensus 365 ~~a~~~~~~~~~~----~~~~~~~~~~~l-i~~~~~~~~~~~a~~~~~~m~~~~---~~p~~~~~~~li~~~~--~~g~~ 434 (482)
. |...+++.++. +..+-...|..+ +..+...+++..|.+.++.+...- ..|....+-.++.+.. +.+..
T Consensus 117 ~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~ 195 (608)
T PF10345_consen 117 A-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSP 195 (608)
T ss_pred H-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCc
Q ss_pred hHHHHHHHHHHHcCCCC---------CHHHHHHHHH--HHHHhccHHHHHHHHHHHhh
Q 038748 435 PEAVKYAKGMAEKGIQV---------TPFALSKLKQ--ILIKARKEAVYEELLKKCKA 481 (482)
Q Consensus 435 ~~A~~~~~~m~~~~~~~---------~~~~~~~l~~--~~~~~g~~~~a~~~~~~m~~ 481 (482)
+++.+.++++......+ ...+|..+++ ++...|+.+.+...++++.+
T Consensus 196 ~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~ 253 (608)
T PF10345_consen 196 DDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQ 253 (608)
T ss_pred hhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
No 309
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.78 E-value=12 Score=31.69 Aligned_cols=18 Identities=11% Similarity=0.244 Sum_probs=10.5
Q ss_pred HHhhCCCcHHHHHHHHHH
Q 038748 110 LLGKNCLFDAMWDAIKSM 127 (482)
Q Consensus 110 ~~~~~~~~~~a~~~~~~~ 127 (482)
.++-.+++++|.++|.+.
T Consensus 23 lfgg~~k~eeAadl~~~A 40 (288)
T KOG1586|consen 23 LFGGSNKYEEAAELYERA 40 (288)
T ss_pred ccCCCcchHHHHHHHHHH
Confidence 344455666666666654
No 310
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.50 E-value=13 Score=29.53 Aligned_cols=53 Identities=9% Similarity=-0.173 Sum_probs=31.5
Q ss_pred hhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhc
Q 038748 112 GKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQY 164 (482)
Q Consensus 112 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 164 (482)
.+.++.+++..++..+.--.+-....-..-...+...|+|.+|..+|+++.+.
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 44567777777777776655433322233334456667777777777776654
No 311
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.47 E-value=10 Score=36.29 Aligned_cols=95 Identities=13% Similarity=0.104 Sum_probs=60.4
Q ss_pred HHHhhhcCCCCCHHHHHHHHHhhcCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCC
Q 038748 55 EDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLS 134 (482)
Q Consensus 55 ~~~l~~~~~~~~~~~~~~ll~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 134 (482)
...+...|+.+++..+..+.+.+.|+...|+.+++.+..- + ....++..+...+ |..+
T Consensus 190 ~~i~~~Egi~~e~eAL~~Ia~~S~Gd~RdAL~lLeq~i~~-~--~~~it~~~V~~~l-------------------g~~~ 247 (484)
T PRK14956 190 EKLCKIENVQYDQEGLFWIAKKGDGSVRDMLSFMEQAIVF-T--DSKLTGVKIRKMI-------------------GYHG 247 (484)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHcCChHHHHHHHHHHHHHh-C--CCCcCHHHHHHHh-------------------CCCC
Confidence 3444456788888888888888888888888888764331 1 1112333332222 4456
Q ss_pred HHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHh
Q 038748 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVF 171 (482)
Q Consensus 135 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 171 (482)
...+..++.++...+....|+.+++.+.+.|..|...
T Consensus 248 ~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~~ 284 (484)
T PRK14956 248 IEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYKF 284 (484)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHHH
Confidence 6666677776666566678888888888888665443
No 312
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=87.21 E-value=5.8 Score=32.69 Aligned_cols=72 Identities=11% Similarity=-0.022 Sum_probs=36.3
Q ss_pred HhHHHHHHHhhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCC--CCCChhhHHHHHHHHHccCCChHHH
Q 038748 187 IDAWQFLRVVDG-RIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGW--DPDNVPAYDSYLITLLKGCDGIYET 261 (482)
Q Consensus 187 ~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~~a 261 (482)
+.|...|-.+.. +.--++.....+...|. ..+.+++..++.+...-..- .+ ++..+.+|+..+.+. ++++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~-n~eil~sLas~~~~~-~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNF-NPEILKSLASIYQKL-KNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCC-CHHHHHHHHHHHHHh-cchhhh
Confidence 344444444443 22233444444444333 55666666666665532111 22 455666666666666 666655
No 313
>PRK11619 lytic murein transglycosylase; Provisional
Probab=86.87 E-value=38 Score=34.34 Aligned_cols=117 Identities=11% Similarity=0.015 Sum_probs=62.2
Q ss_pred cCCHHHHHHHHHHHHHCC-CCCCH--hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHH
Q 038748 326 SNETGAAMKLLDEMVYNG-AFPDI--QTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVA 402 (482)
Q Consensus 326 ~~~~~~a~~~~~~m~~~g-~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 402 (482)
..+.+.|..++....... ..+.. .....+.......+...++...+....... .+.....--+..-...++++.+
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHH
Confidence 445677888887764432 22211 223333333333322456666666544322 2333444445555577888887
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 038748 403 IKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMA 445 (482)
Q Consensus 403 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 445 (482)
...+..|....- -...-.-=+..++...|+.++|..+|++..
T Consensus 332 ~~~i~~L~~~~~-~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 332 NTWLARLPMEAK-EKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHhcCHhhc-cCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 777777654221 111222224455556788888888888763
No 314
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=86.71 E-value=41 Score=34.59 Aligned_cols=303 Identities=9% Similarity=0.022 Sum_probs=145.6
Q ss_pred CCCHhhHHHHHHHHhhCCC--------cHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhc-----
Q 038748 98 KHSPYAWNLVVDLLGKNCL--------FDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQY----- 164 (482)
Q Consensus 98 ~~~~~~~~~li~~~~~~~~--------~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----- 164 (482)
.+.-+.|..+..-+.+..- .+--..-.+.....|.|+. .|......|+++.|..+++.....
T Consensus 320 ~~~WfryH~LFaeFL~~r~~~~~~~~~~~lH~~Aa~w~~~~g~~~e-----AI~hAlaA~d~~~aa~lle~~~~~L~~~~ 394 (894)
T COG2909 320 EGQWFRYHHLFAEFLRQRLQRELAARLKELHRAAAEWFAEHGLPSE-----AIDHALAAGDPEMAADLLEQLEWQLFNGS 394 (894)
T ss_pred CCceeehhHHHHHHHHhhhccccCCchhHHHHHHHHHHHhCCChHH-----HHHHHHhCCCHHHHHHHHHhhhhhhhccc
Confidence 3445666666665554321 1112223344455555542 244445567777777776654110
Q ss_pred ----------CCCCCHhhHH----HHHH--HHHhcCChHhHHHHHHHhhCCCCC-----CHH---HHHHHH-HHHHhcCC
Q 038748 165 ----------GCKHDVFALN----SLLS--AICRDGKTIDAWQFLRVVDGRIKP-----DND---TYAILL-EGWEKERD 219 (482)
Q Consensus 165 ----------~~~~~~~~~~----~ll~--~~~~~g~~~~a~~~~~~~~~~~~~-----~~~---~~~~l~-~~~~~~~~ 219 (482)
++ |+....+ .++. .......+++|..+..++....++ ... .++.+- ......|+
T Consensus 395 ~lsll~~~~~~l-P~~~l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~ 473 (894)
T COG2909 395 ELSLLLAWLKAL-PAELLASTPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGD 473 (894)
T ss_pred chHHHHHHHHhC-CHHHHhhCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCC
Confidence 11 2221111 1222 234567888888888876542211 211 233332 22345788
Q ss_pred HHHHHHHHHHhHHhcC---CCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHH-----HHHHHhcC
Q 038748 220 VANAKKTFGEMVIEVG---WDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLA-----FEECLTGQ 291 (482)
Q Consensus 220 ~~~a~~~~~~~~~~~~---~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-----i~~~~~~g 291 (482)
+++|.++.+....... ..+ ....+..+..+..-. |++++|..+..+..+..-.-+...+..+ ...+...|
T Consensus 474 ~e~a~~lar~al~~L~~~~~~~-r~~~~sv~~~a~~~~-G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qG 551 (894)
T COG2909 474 PEEAEDLARLALVQLPEAAYRS-RIVALSVLGEAAHIR-GELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQG 551 (894)
T ss_pred HHHHHHHHHHHHHhcccccchh-hhhhhhhhhHHHHHh-chHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhh
Confidence 8999888887764311 111 234455555666666 9999998888766554222233333222 23345566
Q ss_pred Chh--HHHHHHHHhhcccCC-----CCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHhh--HHHHHHHHHhc
Q 038748 292 NLR--GAEFIWGAMVGRIGF-----RPDTHMYNMMISLYCYS-NETGAAMKLLDEMVYNGAFPDIQT--YNILFEFLVKG 361 (482)
Q Consensus 292 ~~~--~a~~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~g~~p~~~~--~~~ll~~~~~~ 361 (482)
... +.+..|.....+... .+-..++..+..++.+. +...++..-+.........|-... +..++......
T Consensus 552 q~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~ 631 (894)
T COG2909 552 QVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLR 631 (894)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhc
Confidence 333 233333333211111 11233444555555441 111222222222222212222222 23566777889
Q ss_pred CCHHHHHHHHHHHHhCCCcc----ChhhHHHHHH--HHhcCCChHHHHHHHHH
Q 038748 362 RKLWEASGLFNEMVKNENVL----NHENCRAAVR--VYMDSDDPYVAIKFWKY 408 (482)
Q Consensus 362 g~~~~a~~~~~~~~~~~~~~----~~~~~~~li~--~~~~~~~~~~a~~~~~~ 408 (482)
|+.++|...+.++......+ +...-...+. .....|+.+.+.....+
T Consensus 632 Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 632 GDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 99999999888887653322 2222222222 23456777777666554
No 315
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=86.29 E-value=1.6 Score=23.80 Aligned_cols=26 Identities=19% Similarity=0.096 Sum_probs=11.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHH
Q 038748 421 GNLLVAGLCDMHMLPEAVKYAKGMAE 446 (482)
Q Consensus 421 ~~~li~~~~~~g~~~~A~~~~~~m~~ 446 (482)
|..+...|...|++++|+..|++.++
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 34444444444444555444444443
No 316
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=86.13 E-value=23 Score=31.17 Aligned_cols=144 Identities=11% Similarity=0.139 Sum_probs=89.9
Q ss_pred hhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhc-C-CCCHHHHHHHHHHHHh-hC-ChhhHHHH
Q 038748 82 GPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKE-N-VLSLATFASVFSSYVV-AD-RVKDAITT 157 (482)
Q Consensus 82 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~~~li~~~~~-~~-~~~~a~~~ 157 (482)
++-..+++....+........ |..++. ++....+|+++|+..... . +.+..+...+++.... .+ ....--++
T Consensus 113 ~Dli~FL~~~i~~~~~~k~~~-Y~~LVk---~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEv 188 (292)
T PF13929_consen 113 EDLISFLKLVIINLSSNKSFN-YWDLVK---RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEV 188 (292)
T ss_pred HHHHHHHHHHHhccccccchH-HHHHHH---hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHH
Confidence 444555555444222222211 555443 234456777777744332 2 3677777788877766 22 22222333
Q ss_pred HHHHHhc-CCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038748 158 FDVMEQY-GCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDG--RIKPDNDTYAILLEGWEKERDVANAKKTFGE 229 (482)
Q Consensus 158 ~~~~~~~-~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 229 (482)
.+.+... |-.++..+...++..+++.+++.+..++++.... +...|...|...|+.-.+.|+..-...+.++
T Consensus 189 V~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 189 VDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 3333332 4567778888888889999999998888887544 4666888889999999999988877777654
No 317
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=86.10 E-value=12 Score=30.83 Aligned_cols=90 Identities=16% Similarity=0.015 Sum_probs=66.4
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCccC----hhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhc
Q 038748 357 FLVKGRKLWEASGLFNEMVKNENVLN----HENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLS-ETGNLLVAGLCDM 431 (482)
Q Consensus 357 ~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~ 431 (482)
-+...|++++|..-|.+.++.-.... ...|..-..++.+.+.++.|++-....++.+ |+. .....-..+|-+.
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--PTYEKALERRAEAYEKM 181 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--chhHHHHHHHHHHHHhh
Confidence 47789999999999999988633222 2234445567888999999999888888755 321 2333335678889
Q ss_pred CChhHHHHHHHHHHHcC
Q 038748 432 HMLPEAVKYAKGMAEKG 448 (482)
Q Consensus 432 g~~~~A~~~~~~m~~~~ 448 (482)
..+++|+.-|.++.+..
T Consensus 182 ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESD 198 (271)
T ss_pred hhHHHHHHHHHHHHHhC
Confidence 99999999999998876
No 318
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=86.03 E-value=5.9 Score=33.02 Aligned_cols=76 Identities=17% Similarity=0.137 Sum_probs=57.4
Q ss_pred HHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHh---hCCCCCCHHHHHHHHHH
Q 038748 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV---DGRIKPDNDTYAILLEG 213 (482)
Q Consensus 137 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~---~~~~~~~~~~~~~l~~~ 213 (482)
|.+..+..+.+.+..++++.+.+.-++... .|..+-..++..+|-.|++++|..-++.. .....+...+|..+|.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakP-tda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKP-TDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCC-ccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 345567778888999999999888777643 36667788889999999999998766654 33556667778887765
No 319
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=85.90 E-value=1.9 Score=24.80 Aligned_cols=27 Identities=15% Similarity=0.011 Sum_probs=19.3
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHH
Q 038748 419 ETGNLLVAGLCDMHMLPEAVKYAKGMA 445 (482)
Q Consensus 419 ~~~~~li~~~~~~g~~~~A~~~~~~m~ 445 (482)
.+++.|...|...|++++|..++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 456777777777888888888777764
No 320
>PRK11619 lytic murein transglycosylase; Provisional
Probab=85.88 E-value=43 Score=33.99 Aligned_cols=233 Identities=11% Similarity=0.050 Sum_probs=113.8
Q ss_pred CCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHH
Q 038748 98 KHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLL 177 (482)
Q Consensus 98 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 177 (482)
+.+...-+....+....|+.++|......+-..|.......+.++..+.+.|.+.... ++..|...=...+...-..++
T Consensus 126 p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p~~cd~l~~~~~~~g~lt~~d-~w~R~~~al~~~~~~lA~~l~ 204 (644)
T PRK11619 126 PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSLPNACDKLFSVWQQSGKQDPLA-YLERIRLAMKAGNTGLVTYLA 204 (644)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCChHHHHHHHHHHHcCCCCHHH-HHHHHHHHHHCCCHHHHHHHH
Confidence 4566666777788888888777777777776666655666777777777666544332 222221110011222222222
Q ss_pred HHHHh------------cCChHhHHHHHHHhhCCCCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHhHHhcCCCCCCh-h
Q 038748 178 SAICR------------DGKTIDAWQFLRVVDGRIKPDNDTYAILLEGW--EKERDVANAKKTFGEMVIEVGWDPDNV-P 242 (482)
Q Consensus 178 ~~~~~------------~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~~p~~~-~ 242 (482)
..+.. ..+...+..++. ..+++...-..++.++ ....+.+.|..++.......++.+... .
T Consensus 205 ~~l~~~~~~~a~a~~al~~~p~~~~~~~~----~~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~ 280 (644)
T PRK11619 205 KQLPADYQTIASALIKLQNDPNTVETFAR----TTGPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQE 280 (644)
T ss_pred HhcChhHHHHHHHHHHHHHCHHHHHHHhh----ccCCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 21100 011111111111 1122321111111122 234556778888877654433433221 1
Q ss_pred hHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHH
Q 038748 243 AYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISL 322 (482)
Q Consensus 243 ~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 322 (482)
.+..+....... +...++...++...... .+......-+......++++.+...+..|.... .-...-..-+..+
T Consensus 281 ~~~~lA~~~a~~-~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~--~~~~rw~YW~aRa 355 (644)
T PRK11619 281 LRDIVAWRLMGN-DVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLNTWLARLPMEA--KEKDEWRYWQADL 355 (644)
T ss_pred HHHHHHHHHHhc-cCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhh--ccCHhhHHHHHHH
Confidence 223333333332 22555555555443222 233334444455557778877777777774222 2233444556666
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 038748 323 YCYSNETGAAMKLLDEMV 340 (482)
Q Consensus 323 ~~~~~~~~~a~~~~~~m~ 340 (482)
+...|+.++|...|+.+.
T Consensus 356 ~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 356 LLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHcCCHHHHHHHHHHHh
Confidence 666788888888777663
No 321
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=85.84 E-value=2.4 Score=23.07 Aligned_cols=28 Identities=18% Similarity=0.274 Sum_probs=19.5
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHHHH
Q 038748 384 ENCRAAVRVYMDSDDPYVAIKFWKYMIE 411 (482)
Q Consensus 384 ~~~~~li~~~~~~~~~~~a~~~~~~m~~ 411 (482)
.+|..+..+|...|++++|+..|++.++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 3566677777777777777777777766
No 322
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=85.41 E-value=26 Score=35.78 Aligned_cols=77 Identities=9% Similarity=0.019 Sum_probs=44.5
Q ss_pred HHHhhhcCCCCCHHHHHHHHHhhcCCchhHhHHhhhhhcCCCC------------CCCHhhHHHHHHHHhhCCCcHHHHH
Q 038748 55 EDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLND------------KHSPYAWNLVVDLLGKNCLFDAMWD 122 (482)
Q Consensus 55 ~~~l~~~~~~~~~~~~~~ll~~~~~~~~~a~~~~~~~~~~~~~------------~~~~~~~~~li~~~~~~~~~~~a~~ 122 (482)
...+...++.++...+..+.+.+.|+...|+.+++......+. ..|......++..+. .++...++.
T Consensus 188 ~~Il~~EgI~id~eAL~lIA~~A~GsmRdALsLLdQAia~~~~~It~~~V~~~LG~~d~~~i~~ll~aL~-~~d~~~~l~ 266 (830)
T PRK07003 188 ERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTETAVSGMLGALDQTYMVRLLDALA-AGDGPEILA 266 (830)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCcCHHHHHHHhCCCCHHHHHHHHHHHH-cCCHHHHHH
Confidence 3444456778888888888888888888888887654431111 122223333333332 355666666
Q ss_pred HHHHHHhcCC
Q 038748 123 AIKSMKKENV 132 (482)
Q Consensus 123 ~~~~~~~~~~ 132 (482)
+++++...|.
T Consensus 267 ~~~~l~~~g~ 276 (830)
T PRK07003 267 VADEMALRSL 276 (830)
T ss_pred HHHHHHHhCC
Confidence 6666665554
No 323
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=85.38 E-value=16 Score=28.52 Aligned_cols=80 Identities=8% Similarity=0.143 Sum_probs=40.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----ccChhhHHHHHHHHhcCCC-hHHHHHHHHHHHHcCCCCChhhHHHH
Q 038748 351 YNILFEFLVKGRKLWEASGLFNEMVKNEN-----VLNHENCRAAVRVYMDSDD-PYVAIKFWKYMIENHCSDLSETGNLL 424 (482)
Q Consensus 351 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~l 424 (482)
+++++.-....+++.....+++.+..... ..+...|.+++.+.++... ---+..+|+-|.+.+..++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 45555555555666666666555522110 1233445555555544443 33344555555555555555555555
Q ss_pred HHHHHh
Q 038748 425 VAGLCD 430 (482)
Q Consensus 425 i~~~~~ 430 (482)
|.++.+
T Consensus 122 i~~~l~ 127 (145)
T PF13762_consen 122 IKAALR 127 (145)
T ss_pred HHHHHc
Confidence 555444
No 324
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=85.36 E-value=3.5 Score=22.25 Aligned_cols=26 Identities=12% Similarity=0.166 Sum_probs=16.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhH
Q 038748 206 TYAILLEGWEKERDVANAKKTFGEMV 231 (482)
Q Consensus 206 ~~~~l~~~~~~~~~~~~a~~~~~~~~ 231 (482)
.|..+..+|...|++++|.+.|++..
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al 28 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 45556666666777777777776665
No 325
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=85.11 E-value=0.97 Score=24.95 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=11.2
Q ss_pred CCCChhhHHHHHHHHHccCCChHHH
Q 038748 237 DPDNVPAYDSYLITLLKGCDGIYET 261 (482)
Q Consensus 237 ~p~~~~~~~~l~~~~~~~~~~~~~a 261 (482)
.|++..+|+.+...+... |++++|
T Consensus 9 ~P~n~~a~~nla~~~~~~-g~~~~A 32 (34)
T PF13431_consen 9 NPNNAEAYNNLANLYLNQ-GDYEEA 32 (34)
T ss_pred CCCCHHHHHHHHHHHHHC-cCHHhh
Confidence 444444444444444444 444444
No 326
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.05 E-value=13 Score=36.12 Aligned_cols=45 Identities=11% Similarity=0.052 Sum_probs=21.6
Q ss_pred HhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 038748 181 CRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEM 230 (482)
Q Consensus 181 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 230 (482)
.+.|+++.|.++..+.. +..-|..|.++....+++..|.+.|...
T Consensus 648 l~lgrl~iA~~la~e~~-----s~~Kw~~Lg~~al~~~~l~lA~EC~~~a 692 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEAN-----SEVKWRQLGDAALSAGELPLASECFLRA 692 (794)
T ss_pred hhcCcHHHHHHHHHhhc-----chHHHHHHHHHHhhcccchhHHHHHHhh
Confidence 34455555544444332 3344555555555555555555554433
No 327
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=85.02 E-value=2.8 Score=37.30 Aligned_cols=51 Identities=10% Similarity=0.006 Sum_probs=30.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 038748 322 LYCYSNETGAAMKLLDEMVYNGAFP-DIQTYNILFEFLVKGRKLWEASGLFNEM 374 (482)
Q Consensus 322 ~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 374 (482)
.|.+.|.+++|+..|..-... .| +.+++..-..+|.+...+..|+.=....
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~A 157 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAA 157 (536)
T ss_pred hhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHH
Confidence 366667777777766655542 34 5566666666666666665554443333
No 328
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=84.98 E-value=2.3 Score=24.43 Aligned_cols=28 Identities=21% Similarity=0.125 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhh
Q 038748 454 FALSKLKQILIKARKEAVYEELLKKCKA 481 (482)
Q Consensus 454 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 481 (482)
.+++.+..+|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 5788899999999999999999998753
No 329
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=84.89 E-value=47 Score=33.57 Aligned_cols=42 Identities=12% Similarity=0.168 Sum_probs=22.7
Q ss_pred HHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 038748 176 LLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKE 217 (482)
Q Consensus 176 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 217 (482)
+|--|.++|++++|.++..............+...+..|...
T Consensus 117 ~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 117 LIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTT
T ss_pred HHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhC
Confidence 445556666666666666555544445555555555655543
No 330
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=84.42 E-value=34 Score=31.54 Aligned_cols=65 Identities=11% Similarity=0.010 Sum_probs=41.8
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038748 276 GMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRP---DTHMYNMMISLYCYSNETGAAMKLLDEMVY 341 (482)
Q Consensus 276 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 341 (482)
...++..+...+.+.|.++.|...+..+. ..+... ...+.-.-++.+...|+..+|+..++...+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~-~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLF-QLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHh-ccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34567777777888888888888877774 322111 233334445566677777888877777766
No 331
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=84.39 E-value=18 Score=28.29 Aligned_cols=49 Identities=14% Similarity=0.070 Sum_probs=24.6
Q ss_pred hcCChHhHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHH
Q 038748 182 RDGKTIDAWQFLRVVDGR--IKPDNDTYAILLEGWEKERDVANAKKTFGEMVI 232 (482)
Q Consensus 182 ~~g~~~~a~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 232 (482)
..++++++..+++.|.-- -.+...++.. -.+...|+|++|.++|+++..
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg--~l~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDG--WLLIARGNYDEAARILRELLS 72 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHH--HHHHHcCCHHHHHHHHHhhhc
Confidence 355666666666555431 1122223332 234556666666666666653
No 332
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=84.00 E-value=6.5 Score=29.40 Aligned_cols=59 Identities=12% Similarity=0.169 Sum_probs=37.9
Q ss_pred hHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHH
Q 038748 153 DAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILL 211 (482)
Q Consensus 153 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 211 (482)
+..+.++.+....+.|++......+.+|-+-+|+..|..+|+-++....+....|-.++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 34445555566667777777777777777777777777777777655444444444443
No 333
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=83.87 E-value=49 Score=32.96 Aligned_cols=151 Identities=15% Similarity=0.037 Sum_probs=78.8
Q ss_pred CChHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHHhcC-----ChhHHHHHHHHhhcccCCCCCHHHHHHHHHHH
Q 038748 256 DGIYETVNSLKRMME-------RGCNPGMTFFKLAFEECLTGQ-----NLRGAEFIWGAMVGRIGFRPDTHMYNMMISLY 323 (482)
Q Consensus 256 ~~~~~a~~~~~~m~~-------~~~~~~~~~~~~li~~~~~~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 323 (482)
.+.+.|+.+|+.+.+ .| .......+..+|.+.. +.+.|..++.... +.| .|+....-..+...
T Consensus 263 ~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA-~~g-~~~a~~~lg~~~~~ 337 (552)
T KOG1550|consen 263 QDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAA-ELG-NPDAQYLLGVLYET 337 (552)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHH-hcC-CchHHHHHHHHHHc
Confidence 567777777776655 34 2223444555555432 5566777777764 444 34444333332222
Q ss_pred Hh-cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH--hcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChH
Q 038748 324 CY-SNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLV--KGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPY 400 (482)
Q Consensus 324 ~~-~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 400 (482)
.. ..+...|.++|...-+.|.. +...+..++.... ...+.+.|..++++..+.| .|....-...+..+.. +.++
T Consensus 338 g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~ 414 (552)
T KOG1550|consen 338 GTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYD 414 (552)
T ss_pred CCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-cccc
Confidence 22 24567788888877777643 2222222221111 2336777888888877776 3332222233334444 6666
Q ss_pred HHHHHHHHHHHcCC
Q 038748 401 VAIKFWKYMIENHC 414 (482)
Q Consensus 401 ~a~~~~~~m~~~~~ 414 (482)
.+.-.+..+.+.|.
T Consensus 415 ~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 415 TALALYLYLAELGY 428 (552)
T ss_pred HHHHHHHHHHHhhh
Confidence 66666666655543
No 334
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=83.61 E-value=3.5 Score=22.28 Aligned_cols=24 Identities=17% Similarity=0.009 Sum_probs=11.6
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHH
Q 038748 456 LSKLKQILIKARKEAVYEELLKKC 479 (482)
Q Consensus 456 ~~~l~~~~~~~g~~~~a~~~~~~m 479 (482)
+..+..++.+.|++++|++.+++.
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~a 27 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKA 27 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHH
Confidence 334444555555555555555544
No 335
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.02 E-value=25 Score=28.95 Aligned_cols=130 Identities=15% Similarity=0.083 Sum_probs=79.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHH--HHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHH--
Q 038748 312 DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNI--LFEFLVKGRKLWEASGLFNEMVKNENVLNHENCR-- 387 (482)
Q Consensus 312 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~--ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-- 387 (482)
-...|..++.... .+.. +.....+++......-....+.. +...+...|++++|..-++...... ....+.
T Consensus 53 AS~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t---~De~lk~l 127 (207)
T COG2976 53 ASAQYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQT---KDENLKAL 127 (207)
T ss_pred HHHHHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccc---hhHHHHHH
Confidence 3456666666654 3333 55555666666422211122222 2345677888999988888776532 222222
Q ss_pred ---HHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 038748 388 ---AAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448 (482)
Q Consensus 388 ---~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 448 (482)
.|.+.....|.+++|++.++...+.++.+ .....-.+.+...|+-++|..-|++..+.+
T Consensus 128 ~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~--~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 128 AALRLARVQLQQKKADAALKTLDTIKEESWAA--IVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhccccccHHH--HHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 34556677888899988888776654321 223334467888889999999998888776
No 336
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=82.97 E-value=4.3 Score=27.54 Aligned_cols=46 Identities=11% Similarity=0.224 Sum_probs=21.2
Q ss_pred cCCChHHHHHHHHHHHHcCCCCCh--hhHHHHHHHHHhcCChhHHHHH
Q 038748 395 DSDDPYVAIKFWKYMIENHCSDLS--ETGNLLVAGLCDMHMLPEAVKY 440 (482)
Q Consensus 395 ~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~ 440 (482)
...+.++|+..|....+.-..+.. .++..++.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555443221111 3444555555555555555443
No 337
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=82.85 E-value=3.4 Score=22.08 Aligned_cols=25 Identities=20% Similarity=0.189 Sum_probs=15.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHh
Q 038748 209 ILLEGWEKERDVANAKKTFGEMVIE 233 (482)
Q Consensus 209 ~l~~~~~~~~~~~~a~~~~~~~~~~ 233 (482)
.+..++.+.|++++|.+.|+++..+
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3455566666777777776666644
No 338
>PLN03025 replication factor C subunit; Provisional
Probab=82.64 E-value=38 Score=30.84 Aligned_cols=34 Identities=12% Similarity=0.146 Sum_probs=21.2
Q ss_pred HHhhhcCCCCCHHHHHHHHHhhcCCchhHhHHhh
Q 038748 56 DVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFR 89 (482)
Q Consensus 56 ~~l~~~~~~~~~~~~~~ll~~~~~~~~~a~~~~~ 89 (482)
....+.|+.+++..+..++..+.|+...|+..++
T Consensus 169 ~i~~~egi~i~~~~l~~i~~~~~gDlR~aln~Lq 202 (319)
T PLN03025 169 KVVEAEKVPYVPEGLEAIIFTADGDMRQALNNLQ 202 (319)
T ss_pred HHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3344456666666666666666666666666665
No 339
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=82.37 E-value=34 Score=30.13 Aligned_cols=42 Identities=7% Similarity=-0.016 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHH
Q 038748 118 DAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDV 160 (482)
Q Consensus 118 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 160 (482)
.+|.++|..+.++.-... +-..++..+....+..+|...+..
T Consensus 150 ~KA~ELFayLv~hkgk~v-~~~~~ie~lwpe~D~kka~s~lhT 191 (361)
T COG3947 150 RKALELFAYLVEHKGKEV-TSWEAIEALWPEKDEKKASSLLHT 191 (361)
T ss_pred hHHHHHHHHHHHhcCCcc-cHhHHHHHHccccchhhHHHHHHH
Confidence 567888887776642111 134456666666666666665543
No 340
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=82.31 E-value=30 Score=34.75 Aligned_cols=56 Identities=13% Similarity=0.126 Sum_probs=31.9
Q ss_pred CCchHHHHHHHhhCCCCc--cHHHH----hhhcCCCCCHHHHHHHHHhhcCCchhHhHHhhh
Q 038748 35 LPPTIKTLCEIIANTPSP--TVEDV----LDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRW 90 (482)
Q Consensus 35 ~~~~~~~~~~~l~~~~~~--~~~~~----l~~~~~~~~~~~~~~ll~~~~~~~~~a~~~~~~ 90 (482)
..+.+.+-|..+.-.+.. ++... +.+.|+..+...+..+.+.+.|++..|+.+++.
T Consensus 167 LlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A~Gs~RdALsLLdQ 228 (700)
T PRK12323 167 IPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQGSMRDALSLTDQ 228 (700)
T ss_pred hhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 344555555555543332 23332 334566677666666666777777777777664
No 341
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=82.04 E-value=3.9 Score=21.82 Aligned_cols=24 Identities=13% Similarity=0.051 Sum_probs=16.0
Q ss_pred HHHHHHHHhccHHHHHHHHHHHhh
Q 038748 458 KLKQILIKARKEAVYEELLKKCKA 481 (482)
Q Consensus 458 ~l~~~~~~~g~~~~a~~~~~~m~~ 481 (482)
.+..++.+.|++++|.+.++++.+
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHH
Confidence 455566677777777777776653
No 342
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=81.26 E-value=4.1 Score=24.12 Aligned_cols=22 Identities=18% Similarity=0.145 Sum_probs=11.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHH
Q 038748 425 VAGLCDMHMLPEAVKYAKGMAE 446 (482)
Q Consensus 425 i~~~~~~g~~~~A~~~~~~m~~ 446 (482)
..+|...|+.+.|.+++++...
T Consensus 6 A~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 6 ARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHcCChHHHHHHHHHHHH
Confidence 3445555555555555555443
No 343
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=81.23 E-value=9.1 Score=26.01 Aligned_cols=47 Identities=15% Similarity=-0.038 Sum_probs=37.6
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHHhccHHHHHHHH
Q 038748 430 DMHMLPEAVKYAKGMAEKGIQVTP--FALSKLKQILIKARKEAVYEELL 476 (482)
Q Consensus 430 ~~g~~~~A~~~~~~m~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~ 476 (482)
...+.++|+..|....+.-..+.. .++..++.+++.-|++.+++++-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678889999999998776544333 57888999999999999887753
No 344
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=80.44 E-value=19 Score=25.86 Aligned_cols=11 Identities=18% Similarity=0.259 Sum_probs=4.6
Q ss_pred hhHhHHhhhhh
Q 038748 82 GPAVKFFRWSA 92 (482)
Q Consensus 82 ~~a~~~~~~~~ 92 (482)
++|..+-+|+.
T Consensus 22 qEA~tIAdwL~ 32 (115)
T TIGR02508 22 QEANTIADWLH 32 (115)
T ss_pred HHHHHHHHHHh
Confidence 34444444443
No 345
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=79.98 E-value=2.5 Score=21.49 Aligned_cols=20 Identities=25% Similarity=0.325 Sum_probs=10.5
Q ss_pred HHHHHHHHhccHHHHHHHHH
Q 038748 458 KLKQILIKARKEAVYEELLK 477 (482)
Q Consensus 458 ~l~~~~~~~g~~~~a~~~~~ 477 (482)
.+..++...|+.++|..+++
T Consensus 6 ~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHcCCHHHHHHHHh
Confidence 34445555555555555543
No 346
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=79.94 E-value=43 Score=29.71 Aligned_cols=36 Identities=11% Similarity=0.128 Sum_probs=21.7
Q ss_pred HHHHHHhhCCCCc--cHHHHhhhcCCCCCHHHHHHHHH
Q 038748 40 KTLCEIIANTPSP--TVEDVLDKTLIRVSQETVEQVLK 75 (482)
Q Consensus 40 ~~~~~~l~~~~~~--~~~~~l~~~~~~~~~~~~~~ll~ 75 (482)
+.+.+++...... .+.+.+.+.|..++-..|-.++-
T Consensus 33 da~vq~~~~~~gdle~vak~ldssg~~l~~~rYgd~~f 70 (412)
T KOG2297|consen 33 DAVVQGLEDNAGDLELVAKSLDSSGNDLDYRRYGDILF 70 (412)
T ss_pred HHHHHHHHhcCccHHHHHHHHHhccccccHHHHHHHHH
Confidence 4445555544332 37777777777777766665553
No 347
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=79.82 E-value=1.3e+02 Score=35.14 Aligned_cols=311 Identities=9% Similarity=-0.026 Sum_probs=158.9
Q ss_pred cCCchhHhHHhhhh-hcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHH
Q 038748 78 YSHPGPAVKFFRWS-AYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAIT 156 (482)
Q Consensus 78 ~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 156 (482)
.+.+..|+..++.- ............|-.+...|+.-++++...-+...-.. .++ ...-|-.....|+++.|..
T Consensus 1396 c~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a--~~s---l~~qil~~e~~g~~~da~~ 1470 (2382)
T KOG0890|consen 1396 CKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA--DPS---LYQQILEHEASGNWADAAA 1470 (2382)
T ss_pred hHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc--Ccc---HHHHHHHHHhhccHHHHHH
Confidence 45667777777652 11001111223333444488888888887776654111 122 3344555667799999999
Q ss_pred HHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHhHHhcC
Q 038748 157 TFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAIL-LEGWEKERDVANAKKTFGEMVIEVG 235 (482)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~ 235 (482)
.|+.+.+.+. +....++.++......|.++.+.-..+-......+....++.+ +.+--+.++++....... . .
T Consensus 1471 Cye~~~q~~p-~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l~--~-~-- 1544 (2382)
T KOG0890|consen 1471 CYERLIQKDP-DKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESYLS--D-R-- 1544 (2382)
T ss_pred HHHHhhcCCC-ccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhhhh--c-c--
Confidence 9999988652 3366788888877788888887776666555445555555443 444466777777666554 1 1
Q ss_pred CCCCChhhHHHH--HHHHHccC-CChHHHHHHHHHHHHcCCCC---------CHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 038748 236 WDPDNVPAYDSY--LITLLKGC-DGIYETVNSLKRMMERGCNP---------GMTFFKLAFEECLTGQNLRGAEFIWGAM 303 (482)
Q Consensus 236 ~~p~~~~~~~~l--~~~~~~~~-~~~~~a~~~~~~m~~~~~~~---------~~~~~~~li~~~~~~g~~~~a~~~~~~~ 303 (482)
+...|... ...+.+.. .+.-.-.+.++.+++.-+.| =...|..++....-. +-....+..
T Consensus 1545 ----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~----el~~~~~~l 1616 (2382)
T KOG0890|consen 1545 ----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL----ELENSIEEL 1616 (2382)
T ss_pred ----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH----HHHHHHHHh
Confidence 12223222 22222221 22222223333333321111 012233333222111 111111111
Q ss_pred hcccCCCCC------HHHHHHHHHHHHhcCCHHHHHHHH-HHHHHC----CCC-CCHhhHHHHHHHHHhcCCHHHHHHHH
Q 038748 304 VGRIGFRPD------THMYNMMISLYCYSNETGAAMKLL-DEMVYN----GAF-PDIQTYNILFEFLVKGRKLWEASGLF 371 (482)
Q Consensus 304 ~~~~~~~~~------~~~~~~li~~~~~~~~~~~a~~~~-~~m~~~----g~~-p~~~~~~~ll~~~~~~g~~~~a~~~~ 371 (482)
.++.++ ..-|-.-+..-....+..+-+--+ +.+... +.. --..+|-...+....+|+++.|...+
T Consensus 1617 ---~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nal 1693 (2382)
T KOG0890|consen 1617 ---KKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNAL 1693 (2382)
T ss_pred ---hccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHH
Confidence 111221 111222221111111111111111 111111 111 12356777778888899999998887
Q ss_pred HHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcC
Q 038748 372 NEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENH 413 (482)
Q Consensus 372 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 413 (482)
-+..+.+ . +..+.-..+.....|+...|+.++++..+..
T Consensus 1694 l~A~e~r-~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1694 LNAKESR-L--PEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred Hhhhhcc-c--chHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 7777665 2 2456677788889999999999999888543
No 348
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=79.60 E-value=6.8 Score=37.73 Aligned_cols=103 Identities=13% Similarity=0.067 Sum_probs=57.0
Q ss_pred hhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 038748 147 VADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKT 226 (482)
Q Consensus 147 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 226 (482)
..|+...|.+.+.........-..+....|.....+.|....|-.++.+...-....+.++..+.++|.-..+++.|++.
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~ 698 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEA 698 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHH
Confidence 34666666666665544322222233444555666666666666666553332244455666666777777777777777
Q ss_pred HHHhHHhcCCCCCChhhHHHHHHHHH
Q 038748 227 FGEMVIEVGWDPDNVPAYDSYLITLL 252 (482)
Q Consensus 227 ~~~~~~~~~~~p~~~~~~~~l~~~~~ 252 (482)
|++..+ ..|.+...-+.+....|
T Consensus 699 ~~~a~~---~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 699 FRQALK---LTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHh---cCCCChhhHHHHHHHHH
Confidence 766653 35555555454444433
No 349
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=79.49 E-value=5.6 Score=21.49 Aligned_cols=27 Identities=19% Similarity=0.004 Sum_probs=16.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHH
Q 038748 420 TGNLLVAGLCDMHMLPEAVKYAKGMAE 446 (482)
Q Consensus 420 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 446 (482)
+|..+...|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 445555666666666666666666544
No 350
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=79.33 E-value=39 Score=28.81 Aligned_cols=35 Identities=6% Similarity=0.137 Sum_probs=17.9
Q ss_pred CCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCC
Q 038748 133 LSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKH 168 (482)
Q Consensus 133 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 168 (482)
|.+.....++..|. .+++++|.+++.++-+.|+.|
T Consensus 237 PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp 271 (333)
T KOG0991|consen 237 PHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSP 271 (333)
T ss_pred CChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCH
Confidence 33444444444433 255666666666665555544
No 351
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=79.18 E-value=35 Score=28.24 Aligned_cols=90 Identities=13% Similarity=0.045 Sum_probs=64.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCH-----hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcC
Q 038748 322 LYCYSNETGAAMKLLDEMVYNGAFPDI-----QTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDS 396 (482)
Q Consensus 322 ~~~~~~~~~~a~~~~~~m~~~g~~p~~-----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 396 (482)
-+.+.|++++|..-|....+. +++.. ..|..-..++.+.+.++.|..--.+.++.+.. .......-..+|.+.
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKM 181 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhh
Confidence 467889999999999998875 22222 23444455778889999998888887775432 112222335578899
Q ss_pred CChHHHHHHHHHHHHcC
Q 038748 397 DDPYVAIKFWKYMIENH 413 (482)
Q Consensus 397 ~~~~~a~~~~~~m~~~~ 413 (482)
..+++|++-|+.+.+..
T Consensus 182 ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESD 198 (271)
T ss_pred hhHHHHHHHHHHHHHhC
Confidence 99999999999999854
No 352
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.03 E-value=29 Score=33.88 Aligned_cols=98 Identities=13% Similarity=-0.016 Sum_probs=47.8
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHH
Q 038748 325 YSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIK 404 (482)
Q Consensus 325 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 404 (482)
+.|+++.|.++..+.. +..-|..|-++....|++..|.+.|..... |..|+-.+...|+.+....
T Consensus 649 ~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~ 713 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAV 713 (794)
T ss_pred hcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHH
Confidence 4455555555443322 334455566666666666666555554432 3344445555555554444
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 038748 405 FWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKG 443 (482)
Q Consensus 405 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 443 (482)
+-....+.|. .|.-..+|...|+++++.+++.+
T Consensus 714 la~~~~~~g~------~N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 714 LASLAKKQGK------NNLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHHhhcc------cchHHHHHHHcCCHHHHHHHHHh
Confidence 4444444332 12233344555666665555543
No 353
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=78.69 E-value=53 Score=30.37 Aligned_cols=30 Identities=10% Similarity=0.277 Sum_probs=20.4
Q ss_pred HHHHHHHHHhhCChhhHHHHHHHHHhcCCCC
Q 038748 138 FASVFSSYVVADRVKDAITTFDVMEQYGCKH 168 (482)
Q Consensus 138 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 168 (482)
...++.+.. .|+..+|..+++.+.+.|..|
T Consensus 247 i~~l~~ai~-~~~~~~a~~~~~~l~~~~~~~ 276 (355)
T TIGR02397 247 LIELLEAIL-NKDTAEALKILDEILESGVDP 276 (355)
T ss_pred HHHHHHHHH-cCCHHHHHHHHHHHHHcCCCH
Confidence 334555554 378888888888888776543
No 354
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=78.22 E-value=6.4 Score=21.23 Aligned_cols=28 Identities=18% Similarity=0.023 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhh
Q 038748 454 FALSKLKQILIKARKEAVYEELLKKCKA 481 (482)
Q Consensus 454 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 481 (482)
.+|..+...+...|++++|.+.+++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3567788899999999999999998764
No 355
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=77.76 E-value=68 Score=30.76 Aligned_cols=92 Identities=9% Similarity=0.048 Sum_probs=55.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHC-CCCCCHhhHHHHHHH
Q 038748 281 KLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYC--YSNETGAAMKLLDEMVYN-GAFPDIQTYNILFEF 357 (482)
Q Consensus 281 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~--~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~ll~~ 357 (482)
+.++..+...|-..+|..++..+..- -+|+...|..+|..-. ...+...+..+|+.|... | .|+..|.--+.-
T Consensus 464 s~~l~~~~e~~~~~~ark~y~~l~~l--pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~lw~~y~~~ 539 (568)
T KOG2396|consen 464 SKYLDWAYESGGYKKARKVYKSLQEL--PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDLWMDYMKE 539 (568)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhC--CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHHHHHHHHh
Confidence 45566667777777777777777422 2445666666664322 122366677777776654 4 466666555555
Q ss_pred HHhcCCHHHHHHHHHHHHh
Q 038748 358 LVKGRKLWEASGLFNEMVK 376 (482)
Q Consensus 358 ~~~~g~~~~a~~~~~~~~~ 376 (482)
-...|..+.+-.++.+..+
T Consensus 540 e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 540 ELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred hccCCCcccccHHHHHHHH
Confidence 5567777777776666554
No 356
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.58 E-value=86 Score=31.88 Aligned_cols=124 Identities=9% Similarity=0.039 Sum_probs=56.3
Q ss_pred HhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHH
Q 038748 101 PYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAI 180 (482)
Q Consensus 101 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 180 (482)
...+..+|..+.-.|++++|-...-.|... +..-|..-+..+...++.... +.-+.......+...|..++..+
T Consensus 392 ~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn---~~~eWe~~V~~f~e~~~l~~I---a~~lPt~~~rL~p~vYemvLve~ 465 (846)
T KOG2066|consen 392 KKVGKTYIDHLLFEGKYDEAASLCPKMLGN---NAAEWELWVFKFAELDQLTDI---APYLPTGPPRLKPLVYEMVLVEF 465 (846)
T ss_pred HHHHHHHHHHHHhcchHHHHHhhhHHHhcc---hHHHHHHHHHHhccccccchh---hccCCCCCcccCchHHHHHHHHH
Confidence 345566666666666666666555555543 233344444444444333222 22222222223455666666655
Q ss_pred HhcCChHhHHHHHHHhhC-----------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 038748 181 CRDGKTIDAWQFLRVVDG-----------------RIKPDNDTYAILLEGWEKERDVANAKKTFGEMV 231 (482)
Q Consensus 181 ~~~g~~~~a~~~~~~~~~-----------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 231 (482)
.. .+...-.++..+... ...-+...-..|+..|...+++..|+.++-...
T Consensus 466 L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 466 LA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHHHHHHccChHHHHHHHHhcc
Confidence 55 222222221111100 011122223346666777777777777665553
No 357
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=77.46 E-value=25 Score=27.44 Aligned_cols=81 Identities=16% Similarity=0.216 Sum_probs=54.1
Q ss_pred hHHHHHHHHhhCCCcHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHhhCC-hhhHHHHHHHHHhcCCCCCHhhHHH
Q 038748 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKEN------VLSLATFASVFSSYVVADR-VKDAITTFDVMEQYGCKHDVFALNS 175 (482)
Q Consensus 103 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~li~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ 175 (482)
-.|.++...+..+++...+.+++.+..-. -.+...|.+++.+.....- --.+..+|..|++.+.+.+..-|..
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 36777777777777777777777764332 1345567777777765555 4455667777777677777777777
Q ss_pred HHHHHHhc
Q 038748 176 LLSAICRD 183 (482)
Q Consensus 176 ll~~~~~~ 183 (482)
++.++.+-
T Consensus 121 li~~~l~g 128 (145)
T PF13762_consen 121 LIKAALRG 128 (145)
T ss_pred HHHHHHcC
Confidence 77776654
No 358
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=77.25 E-value=11 Score=28.20 Aligned_cols=60 Identities=7% Similarity=-0.012 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 038748 401 VAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQ 461 (482)
Q Consensus 401 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~ 461 (482)
+..+-++.+...++.|+......-+.++.+.+++..|.++|+-.+.+ ..+....|..+++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v~ 126 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYVK 126 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHHH
Confidence 45566667777788888888888888888888888888888877654 2233334555544
No 359
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=76.62 E-value=23 Score=24.70 Aligned_cols=67 Identities=9% Similarity=-0.043 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHH
Q 038748 119 AMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAW 190 (482)
Q Consensus 119 ~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 190 (482)
.+.++++.+.++|+.+......+-.+--..|+.+.|.+++..+. .| | ..|...+.++-..|.-+-|.
T Consensus 20 ~~~~v~d~ll~~~ilT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg--~--~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 20 KTRDVCDKCLEQGLLTEEDRNRIEAATENHGNESGARELLKRIV-QK--E--GWFSKFLQALRETEHHELAR 86 (88)
T ss_pred hHHHHHHHHHhcCCCCHHHHHHHHHhccccCcHHHHHHHHHHhc-cC--C--cHHHHHHHHHHHcCchhhhh
Confidence 34566667777776665555554444445577777777777776 43 2 24666667766666655443
No 360
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=76.52 E-value=7 Score=23.16 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=9.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 038748 320 ISLYCYSNETGAAMKLLDEMVY 341 (482)
Q Consensus 320 i~~~~~~~~~~~a~~~~~~m~~ 341 (482)
..+|...|+.+.|.+++++...
T Consensus 6 A~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 6 ARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHcCChHHHHHHHHHHHH
Confidence 3344444444444444444443
No 361
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=76.36 E-value=58 Score=33.11 Aligned_cols=37 Identities=14% Similarity=0.127 Sum_probs=23.3
Q ss_pred HHHhhhcCCCCCHHHHHHHHHhhcCCchhHhHHhhhh
Q 038748 55 EDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWS 91 (482)
Q Consensus 55 ~~~l~~~~~~~~~~~~~~ll~~~~~~~~~a~~~~~~~ 91 (482)
...+...|+.+++..+..+.+.+.|+...|+.+++.+
T Consensus 188 ~~Il~kEgi~id~eAL~~Ia~~A~GslRdAlnLLDqa 224 (709)
T PRK08691 188 AHVLDSEKIAYEPPALQLLGRAAAGSMRDALSLLDQA 224 (709)
T ss_pred HHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 3444556666666666666666667776666666543
No 362
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=76.27 E-value=62 Score=29.53 Aligned_cols=79 Identities=5% Similarity=-0.053 Sum_probs=38.2
Q ss_pred hhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHH
Q 038748 152 KDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEK---ERDVANAKKTFG 228 (482)
Q Consensus 152 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~ 228 (482)
+.-+.++++..+.+. -+....-..|..+.+..+.+...+-++.+....+-+...|...++.... .-.++....+|.
T Consensus 48 E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 48 ERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 344455555555432 3444455555555555555555555555544344455555555554433 123444444444
Q ss_pred HhH
Q 038748 229 EMV 231 (482)
Q Consensus 229 ~~~ 231 (482)
+..
T Consensus 127 ~~l 129 (321)
T PF08424_consen 127 KCL 129 (321)
T ss_pred HHH
Confidence 433
No 363
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=75.53 E-value=46 Score=30.04 Aligned_cols=89 Identities=8% Similarity=-0.033 Sum_probs=56.7
Q ss_pred hcCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHH
Q 038748 77 SYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAIT 156 (482)
Q Consensus 77 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 156 (482)
.+|.+++|++.|..... -.++|+.+|..-..+|.+..++..|..=-+.....+-.-..+|..-+.+-...|+..+|.+
T Consensus 109 KQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKk 186 (536)
T KOG4648|consen 109 KQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEAKK 186 (536)
T ss_pred hccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 46788899998886655 5566888888888889888888777665555544332223334444444444556666666
Q ss_pred HHHHHHhcCCCCC
Q 038748 157 TFDVMEQYGCKHD 169 (482)
Q Consensus 157 ~~~~~~~~~~~~~ 169 (482)
=++...+ +.|+
T Consensus 187 D~E~vL~--LEP~ 197 (536)
T KOG4648|consen 187 DCETVLA--LEPK 197 (536)
T ss_pred hHHHHHh--hCcc
Confidence 6665555 3454
No 364
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=75.38 E-value=13 Score=22.44 Aligned_cols=33 Identities=9% Similarity=0.270 Sum_probs=25.3
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 038748 429 CDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQ 461 (482)
Q Consensus 429 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~ 461 (482)
.+.|-..++..++++|.+.|+..++..|..+++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 456777788888888888888888877776654
No 365
>PRK09687 putative lyase; Provisional
Probab=75.13 E-value=61 Score=28.88 Aligned_cols=136 Identities=15% Similarity=0.057 Sum_probs=72.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCccChhhHHHHH
Q 038748 312 DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGR-KLWEASGLFNEMVKNENVLNHENCRAAV 390 (482)
Q Consensus 312 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li 390 (482)
+..+-...+.++++.++ +.++..+-.+.+. +|...-...+.++.+.+ ....+...+..+.. .++..+-...+
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~ 213 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAI 213 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHH
Confidence 44555556666666665 3455555555542 34444444555555442 13345555555543 33555566666
Q ss_pred HHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 038748 391 RVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQIL 463 (482)
Q Consensus 391 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~ 463 (482)
.++.+.|+. .+...+-...+.+. .....+.++...|.. +|+..+.++.+.. ||..+-...+.++
T Consensus 214 ~aLg~~~~~-~av~~Li~~L~~~~-----~~~~a~~ALg~ig~~-~a~p~L~~l~~~~--~d~~v~~~a~~a~ 277 (280)
T PRK09687 214 IGLALRKDK-RVLSVLIKELKKGT-----VGDLIIEAAGELGDK-TLLPVLDTLLYKF--DDNEIITKAIDKL 277 (280)
T ss_pred HHHHccCCh-hHHHHHHHHHcCCc-----hHHHHHHHHHhcCCH-hHHHHHHHHHhhC--CChhHHHHHHHHH
Confidence 777777663 44444444444321 233556666666664 5777777766543 4665555555554
No 366
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=74.69 E-value=1.1e+02 Score=31.70 Aligned_cols=223 Identities=13% Similarity=0.028 Sum_probs=117.3
Q ss_pred CChHHHHHHHHHHHHcCCCCCHH-------HHHHHH-HHHHhcCChhHHHHHHHHhhccc---CCCCCHHHHHHHHHHHH
Q 038748 256 DGIYETVNSLKRMMERGCNPGMT-------FFKLAF-EECLTGQNLRGAEFIWGAMVGRI---GFRPDTHMYNMMISLYC 324 (482)
Q Consensus 256 ~~~~~a~~~~~~m~~~~~~~~~~-------~~~~li-~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~~li~~~~ 324 (482)
.++++|..++.++...-..|+.. .++.+- ......|+++.+.++-+....+- -..+....+..+..+..
T Consensus 429 ~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~ 508 (894)
T COG2909 429 HRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAH 508 (894)
T ss_pred cChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHH
Confidence 78999999988876543232211 222221 12234688888888877765221 12334566677777888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhhHHHHH-----HHHHhcCCHH--HHHHHHHHHHhCC--Cc----cChhhHHHHHH
Q 038748 325 YSNETGAAMKLLDEMVYNGAFPDIQTYNILF-----EFLVKGRKLW--EASGLFNEMVKNE--NV----LNHENCRAAVR 391 (482)
Q Consensus 325 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll-----~~~~~~g~~~--~a~~~~~~~~~~~--~~----~~~~~~~~li~ 391 (482)
-.|++++|..+..+..+..-.-+...+.... ..+...|+.. +.+..|....... -. +-..++..+..
T Consensus 509 ~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~ 588 (894)
T COG2909 509 IRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLR 588 (894)
T ss_pred HhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHH
Confidence 8899999998887766542223433332222 2345566322 2333333333221 01 12234455555
Q ss_pred HHhcCC-ChHHHHHHHHHHHHcCCCCChhh--HHHHHHHHHhcCChhHHHHHHHHHHHcCCC----CCHHHHHHHHH--H
Q 038748 392 VYMDSD-DPYVAIKFWKYMIENHCSDLSET--GNLLVAGLCDMHMLPEAVKYAKGMAEKGIQ----VTPFALSKLKQ--I 462 (482)
Q Consensus 392 ~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~~~~----~~~~~~~~l~~--~ 462 (482)
++.+.. ...++..-+.-.......|-... +..|+......|+.++|...++++...... ++...-...++ .
T Consensus 589 ~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~l 668 (894)
T COG2909 589 AWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLIL 668 (894)
T ss_pred HHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHH
Confidence 555521 12222222222222221121112 235677788899999999999988654333 23333333333 3
Q ss_pred HHHhccHHHHHHHHHH
Q 038748 463 LIKARKEAVYEELLKK 478 (482)
Q Consensus 463 ~~~~g~~~~a~~~~~~ 478 (482)
....|+.+.+..++.+
T Consensus 669 wl~qg~~~~a~~~l~~ 684 (894)
T COG2909 669 WLAQGDKELAAEWLLK 684 (894)
T ss_pred hcccCCHHHHHHHHHh
Confidence 4566777777766554
No 367
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=74.01 E-value=21 Score=33.28 Aligned_cols=125 Identities=10% Similarity=0.018 Sum_probs=0.0
Q ss_pred hHHHHHHHHhhCCCcH---HHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHH
Q 038748 103 AWNLVVDLLGKNCLFD---AMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSA 179 (482)
Q Consensus 103 ~~~~li~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 179 (482)
+-..+++.+...++.. +|.-+++......+.+...--.+++.|...|-...|.+.|..+.=+.++-|.-.|. +..-
T Consensus 182 a~~~Ll~~~~~~~~~~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L~iK~IQ~DTL~h~-~~~r 260 (365)
T PF09797_consen 182 AAHSLLDLYSKTKDSEYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESLDIKNIQLDTLGHL-ILDR 260 (365)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhcChHHHHHHHhHHH-HHHH
Q ss_pred HHhcCChHhHH-HHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038748 180 ICRDGKTIDAW-QFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFG 228 (482)
Q Consensus 180 ~~~~g~~~~a~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 228 (482)
+...|....+. .+++....-..-+..-....+....+.|.+.+..++.+
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~fy~~~~~~~~e~i~~af~~gsysKi~ef~~ 310 (365)
T PF09797_consen 261 LSTLGPFKSAPENLLENALKFYDNSEKETPEFIIKAFENGSYSKIEEFIE 310 (365)
T ss_pred HhccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHH
No 368
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=73.89 E-value=52 Score=28.89 Aligned_cols=89 Identities=13% Similarity=0.125 Sum_probs=59.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhhc-ccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 038748 281 KLAFEECLTGQNLRGAEFIWGAMVG-RIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLV 359 (482)
Q Consensus 281 ~~li~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 359 (482)
..-|++++..+++.++....-+..+ -.+++|. +...-|-.|.+.+.+..+.++-..-....-.-+...|..++..|.
T Consensus 87 vvGIQALAEmnrWreVLsWvlqyYq~pEklPpk--IleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyL 164 (309)
T PF07163_consen 87 VVGIQALAEMNRWREVLSWVLQYYQVPEKLPPK--ILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYL 164 (309)
T ss_pred hhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHH--HHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHH
Confidence 3448889999999988765544321 1233444 344455668999999998888877776533334445777776654
Q ss_pred h-----cCCHHHHHHHH
Q 038748 360 K-----GRKLWEASGLF 371 (482)
Q Consensus 360 ~-----~g~~~~a~~~~ 371 (482)
. .|.+++|+++.
T Consensus 165 l~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 165 LHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHhccccHHHHHHHH
Confidence 4 79999998877
No 369
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=73.73 E-value=43 Score=33.63 Aligned_cols=33 Identities=9% Similarity=0.094 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCC
Q 038748 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKH 168 (482)
Q Consensus 135 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 168 (482)
......++.++.. |+...++.+++++.+.|..+
T Consensus 251 ~~~i~~LldaL~~-~d~~~al~~l~~l~~~G~~~ 283 (618)
T PRK14951 251 RSHVFRLIDALAQ-GDGRTVVETADELRLNGLSA 283 (618)
T ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCH
Confidence 3344445555444 67777777777777766544
No 370
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=73.01 E-value=51 Score=27.09 Aligned_cols=61 Identities=8% Similarity=0.072 Sum_probs=28.6
Q ss_pred HHHhhCChhhHHHHHHHHHhc--CCCCCHhhHHHHHH-HHHhcC--ChHhHHHHHHHhhCCCCCCH
Q 038748 144 SYVVADRVKDAITTFDVMEQY--GCKHDVFALNSLLS-AICRDG--KTIDAWQFLRVVDGRIKPDN 204 (482)
Q Consensus 144 ~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~-~~~~~g--~~~~a~~~~~~~~~~~~~~~ 204 (482)
.....|++++|..-++.+.+. .++--...|..+.. +++..+ .+-+|..++..+..+..|+.
T Consensus 38 ~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~~~ps~ 103 (204)
T COG2178 38 FLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDGRLPSP 103 (204)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcCCCCCH
Confidence 334456666666666555332 11112223444443 444443 34555566666665544443
No 371
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=72.84 E-value=51 Score=28.95 Aligned_cols=86 Identities=7% Similarity=-0.002 Sum_probs=42.3
Q ss_pred HHHHhhCCCcHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHh----
Q 038748 108 VDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICR---- 182 (482)
Q Consensus 108 i~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~---- 182 (482)
|.+++..++|.+++...-+.-+..- ....+...-|-.|.+.+.+..+.++-....+..-.-+...|.+++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 5566666666666554443333221 23344444455566666666666665555543212222335555444433
Q ss_pred -cCChHhHHHHH
Q 038748 183 -DGKTIDAWQFL 193 (482)
Q Consensus 183 -~g~~~~a~~~~ 193 (482)
.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 35555555544
No 372
>PHA02875 ankyrin repeat protein; Provisional
Probab=72.47 E-value=41 Score=31.94 Aligned_cols=205 Identities=11% Similarity=0.097 Sum_probs=102.5
Q ss_pred HHHHHHhHHhcCCCCCChh-hHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCChhHHHHHH
Q 038748 224 KKTFGEMVIEVGWDPDNVP-AYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMT--FFKLAFEECLTGQNLRGAEFIW 300 (482)
Q Consensus 224 ~~~~~~~~~~~~~~p~~~~-~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~li~~~~~~g~~~~a~~~~ 300 (482)
.++++.+.+ .|..|+... ...+.+...+.. |+.+ +.+.+.+.|..|+.. .....+...+..|+.+.+..++
T Consensus 15 ~~iv~~Ll~-~g~~~n~~~~~g~tpL~~A~~~-~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll 88 (413)
T PHA02875 15 LDIARRLLD-IGINPNFEIYDGISPIKLAMKF-RDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELL 88 (413)
T ss_pred HHHHHHHHH-CCCCCCccCCCCCCHHHHHHHc-CCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHH
Confidence 677777775 487774322 123344444555 6654 444555666655432 1234456667788888777666
Q ss_pred HHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh---hHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038748 301 GAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQ---TYNILFEFLVKGRKLWEASGLFNEMVKN 377 (482)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~---~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 377 (482)
+.-. ...-..+..-.+ .+...+..|+. ++++.+.+.|..|+.. ..+. +...+..|+.+-+..+ .+.
T Consensus 89 ~~~~-~~~~~~~~~g~t-pL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tp-Lh~A~~~~~~~~v~~L----l~~ 157 (413)
T PHA02875 89 DLGK-FADDVFYKDGMT-PLHLATILKKL----DIMKLLIARGADPDIPNTDKFSP-LHLAVMMGDIKGIELL----IDH 157 (413)
T ss_pred HcCC-cccccccCCCCC-HHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCH-HHHHHHcCCHHHHHHH----Hhc
Confidence 5431 110011111122 23334455665 4555566667665432 2233 3444567776554444 444
Q ss_pred CCccCh---hhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhh---HHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 038748 378 ENVLNH---ENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSET---GNLLVAGLCDMHMLPEAVKYAKGMAEKGIQV 451 (482)
Q Consensus 378 ~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 451 (482)
|..++. .-.+.+. ..+..|+.+ +.+.+.+.|..++... ....+...+..|+.+ +.+-+.+.|..+
T Consensus 158 g~~~~~~d~~g~TpL~-~A~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~gad~ 228 (413)
T PHA02875 158 KACLDIEDCCGCTPLI-IAMAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLFIKRGADC 228 (413)
T ss_pred CCCCCCCCCCCCCHHH-HHHHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHCCcCc
Confidence 443332 2233333 334456644 4455666776665432 123444334556554 445556678777
Q ss_pred CHH
Q 038748 452 TPF 454 (482)
Q Consensus 452 ~~~ 454 (482)
+..
T Consensus 229 n~~ 231 (413)
T PHA02875 229 NIM 231 (413)
T ss_pred chH
Confidence 643
No 373
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=71.92 E-value=30 Score=24.14 Aligned_cols=65 Identities=15% Similarity=0.022 Sum_probs=31.2
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccHHHHH
Q 038748 403 IKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYE 473 (482)
Q Consensus 403 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 473 (482)
.++++.+.+.|+- +......+-.+-...|+.+.|.+++..+. .| +..|..++.++...|..+-|.
T Consensus 22 ~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 22 RDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QK----EGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchhhhh
Confidence 3455555555542 21222222222224466666666666655 43 234555666666666544443
No 374
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.79 E-value=1.2e+02 Score=30.90 Aligned_cols=102 Identities=10% Similarity=0.059 Sum_probs=70.8
Q ss_pred HHHHhhCCCcHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCC
Q 038748 108 VDLLGKNCLFDAMWDAIKSMKKENV--LSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGK 185 (482)
Q Consensus 108 i~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 185 (482)
|+.+.+.+.+++|+...+.....-. .........|..+...|++++|-...-.|.. -+..-|.--+.-++..++
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e~~~ 438 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAELDQ 438 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhccccc
Confidence 6677788889999888776555432 2456788889999999999999998888865 356667666666666665
Q ss_pred hHhHHHHHHHhhCCC-CCCHHHHHHHHHHHHh
Q 038748 186 TIDAWQFLRVVDGRI-KPDNDTYAILLEGWEK 216 (482)
Q Consensus 186 ~~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 216 (482)
.... +.-+..+. ..+...|..++..|..
T Consensus 439 l~~I---a~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 439 LTDI---APYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cchh---hccCCCCCcccCchHHHHHHHHHHH
Confidence 5433 22333322 2466778888887776
No 375
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=71.56 E-value=18 Score=29.27 Aligned_cols=51 Identities=8% Similarity=0.126 Sum_probs=24.2
Q ss_pred CCCCCChhhHHHHHHHHHccC---CC-------hHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 038748 235 GWDPDNVPAYDSYLITLLKGC---DG-------IYETVNSLKRMMERGCNPGMTFFKLAFEEC 287 (482)
Q Consensus 235 ~~~p~~~~~~~~l~~~~~~~~---~~-------~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 287 (482)
.+.|+...++..+..++.... .+ +++|.+.|++... ..|+...|+.-+...
T Consensus 63 ~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 63 KINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMA 123 (186)
T ss_dssp HH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHH
T ss_pred hcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHH
Confidence 457766666666666655441 22 2333333333333 346666676666655
No 376
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.96 E-value=70 Score=33.03 Aligned_cols=189 Identities=13% Similarity=0.072 Sum_probs=116.4
Q ss_pred CCCHHHHHHHHHhhcCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 038748 64 RVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFS 143 (482)
Q Consensus 64 ~~~~~~~~~ll~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~ 143 (482)
.+++..|.+-+.....+.++.+.+.+... -.=.++|..+.+.|.++-|+.+.+.=..+ ..
T Consensus 592 ~IDptEy~FKlALi~k~ydeVl~lI~ns~---------LvGqaiIaYLqKkgypeiAL~FVkD~~tR-----------F~ 651 (1202)
T KOG0292|consen 592 TIDPTEYRFKLALLNKKYDEVLHLIKNSN---------LVGQAIIAYLQKKGYPEIALHFVKDERTR-----------FE 651 (1202)
T ss_pred eechHHHHHHHHHHhhhhHHHHHHHHhcC---------cccHHHHHHHHhcCCcceeeeeecCcchh-----------ee
Confidence 35666666655555556666655554211 12245667777788887777665543322 23
Q ss_pred HHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 038748 144 SYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANA 223 (482)
Q Consensus 144 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 223 (482)
.+...|+++.|++.-..+ -|..+|..|.....+.|+.+-|+..|+..+ -|..|--.|.-.|+.++-
T Consensus 652 LaLe~gnle~ale~akkl------dd~d~w~rLge~Al~qgn~~IaEm~yQ~~k--------nfekLsfLYliTgn~eKL 717 (1202)
T KOG0292|consen 652 LALECGNLEVALEAAKKL------DDKDVWERLGEEALRQGNHQIAEMCYQRTK--------NFEKLSFLYLITGNLEKL 717 (1202)
T ss_pred eehhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHhcchHHHHHHHHHhh--------hhhheeEEEEEeCCHHHH
Confidence 345679999988766554 367789999999999999999999998776 345555567778888877
Q ss_pred HHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 038748 224 KKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAM 303 (482)
Q Consensus 224 ~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 303 (482)
.++-+....+ .| +...+..+++. |+.++-.++++.- |..| ..|. .....|.-+.|.++.++.
T Consensus 718 ~Km~~iae~r----~D---~~~~~qnalYl--~dv~ervkIl~n~---g~~~--layl----ta~~~G~~~~ae~l~ee~ 779 (1202)
T KOG0292|consen 718 SKMMKIAEIR----ND---ATGQFQNALYL--GDVKERVKILENG---GQLP--LAYL----TAAAHGLEDQAEKLGEEL 779 (1202)
T ss_pred HHHHHHHHhh----hh---hHHHHHHHHHh--ccHHHHHHHHHhc---Cccc--HHHH----HHhhcCcHHHHHHHHHhh
Confidence 6665554322 21 22222333332 6777777666542 2222 1121 123467778888888887
Q ss_pred h
Q 038748 304 V 304 (482)
Q Consensus 304 ~ 304 (482)
-
T Consensus 780 ~ 780 (1202)
T KOG0292|consen 780 E 780 (1202)
T ss_pred c
Confidence 4
No 377
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.63 E-value=1.4e+02 Score=31.03 Aligned_cols=277 Identities=10% Similarity=0.076 Sum_probs=0.0
Q ss_pred HHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCC
Q 038748 178 SAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDG 257 (482)
Q Consensus 178 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 257 (482)
..|...|+++.|.++-..- ..--..++..-...|.+.+++..|-+++.++.+ .+..+.--++.. .+
T Consensus 366 k~yLd~g~y~kAL~~ar~~---p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~----------~FEEVaLKFl~~-~~ 431 (911)
T KOG2034|consen 366 KTYLDKGEFDKALEIARTR---PDALETVLLKQADFLFQDKEYLRAAEIYAETLS----------SFEEVALKFLEI-NQ 431 (911)
T ss_pred HHHHhcchHHHHHHhccCC---HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh----------hHHHHHHHHHhc-CC
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH------hcCChh------------HHHHHHHHhhcccCCCCCHHHHHHH
Q 038748 258 IYETVNSLKRMMERGCNPGMTFFKLAFEECL------TGQNLR------------GAEFIWGAMVGRIGFRPDTHMYNMM 319 (482)
Q Consensus 258 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~------~~g~~~------------~a~~~~~~~~~~~~~~~~~~~~~~l 319 (482)
.+ ++..|-.=+-..++|...+-..++.... +.++++ .-..+-.++.+......+...+.+.
T Consensus 432 ~~-~L~~~L~KKL~~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~nretv 510 (911)
T KOG2034|consen 432 ER-ALRTFLDKKLDRLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDELNRETV 510 (911)
T ss_pred HH-HHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHH
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh-----------------------
Q 038748 320 ISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK----------------------- 376 (482)
Q Consensus 320 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----------------------- 376 (482)
...+...|+.+....+-.-|.. |..++.-+.+.|.+++|++++..-..
T Consensus 511 ~~l~~~~~~~e~ll~fA~l~~d---------~~~vv~~~~q~e~yeeaLevL~~~~~~el~yk~ap~Li~~~p~~tV~~w 581 (911)
T KOG2034|consen 511 YQLLASHGRQEELLQFANLIKD---------YEFVVSYWIQQENYEEALEVLLNQRNPELFYKYAPELITHSPKETVSAW 581 (911)
T ss_pred HHHHHHccCHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHhhhHHHhcCcHHHHHHH
Q ss_pred --CCCccChhhHHHHHHHHhcC---CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 038748 377 --NENVLNHENCRAAVRVYMDS---DDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQV 451 (482)
Q Consensus 377 --~~~~~~~~~~~~li~~~~~~---~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 451 (482)
.+-..+......++..+.+. .....+.+.++-....-..-+...+|.++..|++ +..+.....++.....+-.
T Consensus 582 m~~~d~~~~~li~~~L~~~~~~~~~~~~~~~i~yl~f~~~~l~~~~~~ihn~ll~lya~-~~~~~ll~~le~~~~~~~~- 659 (911)
T KOG2034|consen 582 MAQKDLDPNRLIPPILSYFSNWHSEYEENQAIRYLEFCIEVLGMTNPAIHNSLLHLYAK-HERDDLLLYLEIIKFMKSR- 659 (911)
T ss_pred HHccccCchhhhHHHHHHHhcCCccccHHHHHHHHHHHHHhccCcCHHHHHHHHHHhhc-CCccchHHHHHHHhhcccc-
Q ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHh
Q 038748 452 TPFALSKLKQILIKARKEAVYEELLKKCK 480 (482)
Q Consensus 452 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 480 (482)
..+-....++.|.+.+....+..++..|+
T Consensus 660 ~~YDl~~alRlc~~~~~~ra~V~l~~~l~ 688 (911)
T KOG2034|consen 660 VHYDLDYALRLCLKFKKTRACVFLLCMLN 688 (911)
T ss_pred ceecHHHHHHHHHHhCccceeeeHHHHHH
No 378
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=70.11 E-value=74 Score=27.73 Aligned_cols=69 Identities=7% Similarity=-0.007 Sum_probs=41.3
Q ss_pred cCCCCCHhhHHHHHHHH-HhcCChHhHHHHHHHhhC--C--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHH
Q 038748 164 YGCKHDVFALNSLLSAI-CRDGKTIDAWQFLRVVDG--R--IKPDNDTYAILLEGWEKERDVANAKKTFGEMVI 232 (482)
Q Consensus 164 ~~~~~~~~~~~~ll~~~-~~~g~~~~a~~~~~~~~~--~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 232 (482)
.+-.||+..=|.--.+- .+..++++|+.-|.++.+ | ....-.....++..+.+.+++++....|.++..
T Consensus 20 s~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT 93 (440)
T KOG1464|consen 20 SNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLT 93 (440)
T ss_pred cCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 34556665544332211 233467778877777543 1 233344556677778888888888887777763
No 379
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=69.54 E-value=1.5e+02 Score=31.16 Aligned_cols=69 Identities=13% Similarity=0.052 Sum_probs=35.6
Q ss_pred CCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhc---------------CCCCHHHHHHHHHHHHhhCChhhHHHHHHH
Q 038748 96 NDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKE---------------NVLSLATFASVFSSYVVADRVKDAITTFDV 160 (482)
Q Consensus 96 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 160 (482)
+...+...+..++... .|+...++.+++++... +..+......+++++. .++...++.++++
T Consensus 196 Gv~id~eal~lLa~~s--gGdlR~Al~eLEKLia~~~~~~IT~e~V~allg~~~~~~I~~lidAL~-~~D~a~al~~l~~ 272 (824)
T PRK07764 196 GVPVEPGVLPLVIRAG--GGSVRDSLSVLDQLLAGAGPEGVTYERAVALLGVTDSALIDEAVDALA-AGDGAALFGTVDR 272 (824)
T ss_pred CCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHhcCCCHHHHHHHHHHHH-cCCHHHHHHHHHH
Confidence 4444555555444433 35555566555554421 0112222333444444 4667777777777
Q ss_pred HHhcCCC
Q 038748 161 MEQYGCK 167 (482)
Q Consensus 161 ~~~~~~~ 167 (482)
+.+.|..
T Consensus 273 Li~~G~d 279 (824)
T PRK07764 273 VIEAGHD 279 (824)
T ss_pred HHHcCCC
Confidence 7776654
No 380
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=69.38 E-value=1.1e+02 Score=30.18 Aligned_cols=37 Identities=3% Similarity=0.057 Sum_probs=26.6
Q ss_pred CCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCH
Q 038748 133 LSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDV 170 (482)
Q Consensus 133 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 170 (482)
.+......++.++.. |+.+.++.+++.+...|..|..
T Consensus 244 ~~~~~i~~ll~al~~-~d~~~~l~~~~~l~~~g~~~~~ 280 (509)
T PRK14958 244 IEPLLLFDILEALAA-KAGDRLLGCVTRLVEQGVDFSN 280 (509)
T ss_pred CCHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCHHH
Confidence 445555666666554 8888899999999888876643
No 381
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=68.95 E-value=6.6 Score=29.82 Aligned_cols=30 Identities=13% Similarity=0.047 Sum_probs=20.0
Q ss_pred CCChHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 038748 396 SDDPYVAIKFWKYMIENHCSDLSETGNLLVAG 427 (482)
Q Consensus 396 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 427 (482)
-|.-..|.++|+.|++.|-+|| .|+.|+..
T Consensus 108 ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~ 137 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPD--DWDALLKE 137 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCc--cHHHHHHH
Confidence 3555667777777777777665 56666654
No 382
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.73 E-value=66 Score=26.60 Aligned_cols=127 Identities=9% Similarity=0.041 Sum_probs=78.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHH-----HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhh
Q 038748 276 GMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYN-----MMISLYCYSNETGAAMKLLDEMVYNGAFPDIQT 350 (482)
Q Consensus 276 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-----~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 350 (482)
-...|..++..... +.. +.......+... +...+|. .+...+...|++++|+..++..... |....
T Consensus 53 AS~~Y~~~i~~~~a-k~~-~~~~~~ekf~~~----n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~ 123 (207)
T COG2976 53 ASAQYQNAIKAVQA-KKP-KSIAAAEKFVQA----NGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDEN 123 (207)
T ss_pred HHHHHHHHHHHHhc-CCc-hhHHHHHHHHhh----ccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHH
Confidence 35566666666542 333 444444444312 1122232 2345677889999999888877653 33333
Q ss_pred HHHH-----HHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcC
Q 038748 351 YNIL-----FEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENH 413 (482)
Q Consensus 351 ~~~l-----l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 413 (482)
+..+ .+.....|.+++|+..++.....+.. ......-.+.+...|+-++|..-|+...+.+
T Consensus 124 lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 124 LKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 4333 34567788899999888887665443 2223345677888899999999998888765
No 383
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=68.69 E-value=10 Score=31.51 Aligned_cols=48 Identities=8% Similarity=0.104 Sum_probs=21.4
Q ss_pred hhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHh
Q 038748 82 GPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKK 129 (482)
Q Consensus 82 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 129 (482)
+......+|..+-....|++.+|..++..+...|+.++|.++..++..
T Consensus 125 ~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 125 EMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333333344333333444444444444444444444444444444444
No 384
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=68.53 E-value=37 Score=26.58 Aligned_cols=43 Identities=14% Similarity=0.101 Sum_probs=18.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Q 038748 425 VAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKAR 467 (482)
Q Consensus 425 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 467 (482)
+..+...++.-.|.++++++.+.+...+..|...-++.+...|
T Consensus 27 l~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 27 LELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 3344444444445555555544444444433333334443333
No 385
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=68.42 E-value=91 Score=31.27 Aligned_cols=32 Identities=9% Similarity=0.022 Sum_probs=18.8
Q ss_pred hcCCCCCHHHHHHHHHhhcCCchhHhHHhhhh
Q 038748 60 KTLIRVSQETVEQVLKFSYSHPGPAVKFFRWS 91 (482)
Q Consensus 60 ~~~~~~~~~~~~~ll~~~~~~~~~a~~~~~~~ 91 (482)
+.|+.++......+.+...|+...|+..++.+
T Consensus 193 ~egi~i~~~al~~la~~a~G~lr~al~~Ldql 224 (576)
T PRK14965 193 QEGISISDAALALVARKGDGSMRDSLSTLDQV 224 (576)
T ss_pred HhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 45566666666665555566666666665543
No 386
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=67.99 E-value=12 Score=32.99 Aligned_cols=38 Identities=11% Similarity=0.131 Sum_probs=22.3
Q ss_pred CCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCC
Q 038748 236 WDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCN 274 (482)
Q Consensus 236 ~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~ 274 (482)
+.||....|+..|....+. |++++|++++++..+.|+.
T Consensus 252 v~~dTe~Yy~~aI~~AVk~-gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 252 MLNDTESYFNQAIKQAVKK-GDVDKALKLLDEAERLGST 289 (303)
T ss_pred cCchHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCc
Confidence 3444444555666666666 6666666666666666644
No 387
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=67.56 E-value=14 Score=24.17 Aligned_cols=51 Identities=12% Similarity=0.110 Sum_probs=32.7
Q ss_pred CCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhC
Q 038748 99 HSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVAD 149 (482)
Q Consensus 99 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 149 (482)
|....++.++...++..-.++++..+.+...+|..+..+|..-++.+++..
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~I~~d~~lK~vR~LaReQ 56 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGSIDLDTFLKQVRSLAREQ 56 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 455666777777777666777777777777777666666666666665543
No 388
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=67.45 E-value=49 Score=30.81 Aligned_cols=37 Identities=8% Similarity=0.131 Sum_probs=26.5
Q ss_pred CCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCC
Q 038748 132 VLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHD 169 (482)
Q Consensus 132 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 169 (482)
.++......++.++.. ++...+..+++.+.+.|..|.
T Consensus 243 ~~~~~~i~~l~~ai~~-~~~~~~~~~~~~l~~~g~~~~ 279 (363)
T PRK14961 243 LLNEKQSFLLTDALLK-KDSKKTMLLLNKISSIGIEWE 279 (363)
T ss_pred CCCHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCHH
Confidence 3455556666776644 888999999999988775543
No 389
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=67.16 E-value=99 Score=28.06 Aligned_cols=111 Identities=11% Similarity=0.013 Sum_probs=58.8
Q ss_pred hhHHHHHHHHhhcccCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 038748 293 LRGAEFIWGAMVGRIGF---RPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASG 369 (482)
Q Consensus 293 ~~~a~~~~~~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 369 (482)
.+.|.+.|+.......- ..+......++....+.|+.+.-..+++..... .+...-..++.+++...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccCCHHHHHH
Confidence 45667777776532111 345555566666666777755544454444432 456667778888888888888888
Q ss_pred HHHHHHhCCCccChhhHHHHHHHHhcCCC--hHHHHHHHH
Q 038748 370 LFNEMVKNENVLNHENCRAAVRVYMDSDD--PYVAIKFWK 407 (482)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~~~a~~~~~ 407 (482)
+++.....+..++...+ .++.++...+. .+.+.+.+.
T Consensus 223 ~l~~~l~~~~v~~~d~~-~~~~~~~~~~~~~~~~~~~~~~ 261 (324)
T PF11838_consen 223 LLDLLLSNDKVRSQDIR-YVLAGLASSNPVGRDLAWEFFK 261 (324)
T ss_dssp HHHHHHCTSTS-TTTHH-HHHHHHH-CSTTCHHHHHHHHH
T ss_pred HHHHHcCCcccccHHHH-HHHHHHhcCChhhHHHHHHHHH
Confidence 88887775423333333 33334432222 355555543
No 390
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.19 E-value=1.8e+02 Score=30.65 Aligned_cols=38 Identities=13% Similarity=0.309 Sum_probs=22.8
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 038748 323 YCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVK 360 (482)
Q Consensus 323 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 360 (482)
|......+-+..+++.+....-.++....+.++..|+.
T Consensus 601 ~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 601 YLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred HhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 44555666666777766665555555666666655543
No 391
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=65.99 E-value=55 Score=26.70 Aligned_cols=47 Identities=13% Similarity=0.106 Sum_probs=25.5
Q ss_pred cHHHHHHHHHHHhcCCCCH---H-----HHHHHHHHHHhhCChhhHHHHHHHHHh
Q 038748 117 FDAMWDAIKSMKKENVLSL---A-----TFASVFSSYVVADRVKDAITTFDVMEQ 163 (482)
Q Consensus 117 ~~~a~~~~~~~~~~~~~~~---~-----~~~~li~~~~~~~~~~~a~~~~~~~~~ 163 (482)
++.|+.+|+.+.+...++. . .-...+-.|.+.|.+++|.+++++...
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc
Confidence 4566777776666543221 0 111233456666666666666666655
No 392
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=65.47 E-value=1.1e+02 Score=27.73 Aligned_cols=110 Identities=11% Similarity=-0.020 Sum_probs=49.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCccChhhHHHHHHH-HhcCCChHHHHHHHHHHHHcCCCCCh----hh
Q 038748 350 TYNILFEFLVKGRKLWEASGLFNEMVK----NENVLNHENCRAAVRV-YMDSDDPYVAIKFWKYMIENHCSDLS----ET 420 (482)
Q Consensus 350 ~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~~li~~-~~~~~~~~~a~~~~~~m~~~~~~p~~----~~ 420 (482)
.+.....-||+.|+.+.|.+.+++..+ .|.+.|...+.+-+.. |....-+.+-++..+.+.+.|-.-+. .+
T Consensus 106 a~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKv 185 (393)
T KOG0687|consen 106 AMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKV 185 (393)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHH
Confidence 344445556666666666665554433 2555555544433322 22333344455555555555532222 22
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 038748 421 GNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQ 461 (482)
Q Consensus 421 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~ 461 (482)
|..+- +....++.+|-.+|-+....=-.-....|..++.
T Consensus 186 Y~Gly--~msvR~Fk~Aa~Lfld~vsTFtS~El~~Y~~~v~ 224 (393)
T KOG0687|consen 186 YQGLY--CMSVRNFKEAADLFLDSVSTFTSYELMSYETFVR 224 (393)
T ss_pred HHHHH--HHHHHhHHHHHHHHHHHcccccceecccHHHHHH
Confidence 32221 2234556666666555433221222334444444
No 393
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=65.35 E-value=76 Score=31.10 Aligned_cols=36 Identities=6% Similarity=0.083 Sum_probs=26.3
Q ss_pred CCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCC
Q 038748 133 LSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHD 169 (482)
Q Consensus 133 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 169 (482)
.+......++.+... |+.+.|+.+++++...|..|.
T Consensus 256 ~~~~~if~L~~ai~~-~d~~~Al~~l~~L~~~g~~~~ 291 (507)
T PRK06645 256 VDSSVIIEFVEYIIH-RETEKAINLINKLYGSSVNLE 291 (507)
T ss_pred CCHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCHH
Confidence 344455566666554 899999999999999887554
No 394
>PRK10941 hypothetical protein; Provisional
Probab=64.96 E-value=1e+02 Score=27.29 Aligned_cols=58 Identities=9% Similarity=0.042 Sum_probs=30.5
Q ss_pred HHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHh
Q 038748 138 FASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196 (482)
Q Consensus 138 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 196 (482)
.+.+-.+|.+.++++.|+.+.+.+..... .|+.-+.--.-.|.+.|.+..|..=++..
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P-~dp~e~RDRGll~~qL~c~~~A~~DL~~f 241 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDP-EDPYEIRDRGLIYAQLDCEHVALSDLSYF 241 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 33444555566666666666666655432 23333444444555666666665555443
No 395
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=64.22 E-value=18 Score=32.03 Aligned_cols=44 Identities=11% Similarity=-0.015 Sum_probs=30.0
Q ss_pred CCChh-hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 038748 415 SDLSE-TGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSK 458 (482)
Q Consensus 415 ~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 458 (482)
.||.. .|+.-|....+.|++++|++++++..+.|+.--..+|-.
T Consensus 253 ~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 253 LNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 34443 456777777888888888888888888887654555543
No 396
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=63.77 E-value=30 Score=20.91 Aligned_cols=32 Identities=13% Similarity=0.197 Sum_probs=18.9
Q ss_pred hhCChhhHHHHHHHHHhcCCCCCHhhHHHHHH
Q 038748 147 VADRVKDAITTFDVMEQYGCKHDVFALNSLLS 178 (482)
Q Consensus 147 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 178 (482)
+.|-..++..+++.|.+.|+..+...|..++.
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 44555566666666666666666655555543
No 397
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=63.77 E-value=1.2e+02 Score=30.44 Aligned_cols=22 Identities=9% Similarity=0.223 Sum_probs=13.9
Q ss_pred hhCChhhHHHHHHHHHhcCCCC
Q 038748 147 VADRVKDAITTFDVMEQYGCKH 168 (482)
Q Consensus 147 ~~~~~~~a~~~~~~~~~~~~~~ 168 (482)
..++...|+.++..+...|..|
T Consensus 257 ~~kd~~~al~~l~~Ll~~ge~~ 278 (605)
T PRK05896 257 QKNDIEELRNLINELESKGINF 278 (605)
T ss_pred HCCCHHHHHHHHHHHHHcCCCH
Confidence 3466777777777776666443
No 398
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=63.41 E-value=78 Score=31.96 Aligned_cols=30 Identities=20% Similarity=0.371 Sum_probs=17.0
Q ss_pred HHHHHHHHHhhCChhhHHHHHHHHHhcCCCC
Q 038748 138 FASVFSSYVVADRVKDAITTFDVMEQYGCKH 168 (482)
Q Consensus 138 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 168 (482)
+..++.++. .++..+|+.+++.+...|..|
T Consensus 251 iF~L~dai~-~~~~~~al~ll~~Ll~~g~~~ 280 (614)
T PRK14971 251 YFRLTDALL-AGKVSDSLLLFDEILNKGFDG 280 (614)
T ss_pred HHHHHHHHH-cCCHHHHHHHHHHHHHcCCCH
Confidence 334444433 356777777777777666543
No 399
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=63.35 E-value=56 Score=23.88 Aligned_cols=17 Identities=12% Similarity=-0.085 Sum_probs=7.2
Q ss_pred HhcCChHhHHHHHHHhh
Q 038748 181 CRDGKTIDAWQFLRVVD 197 (482)
Q Consensus 181 ~~~g~~~~a~~~~~~~~ 197 (482)
.+.|-.+++...+.++.
T Consensus 80 ~klGL~~~~e~~l~rla 96 (116)
T PF09477_consen 80 WKLGLASALESRLTRLA 96 (116)
T ss_dssp HHCT-HHHHHHHHHHHC
T ss_pred HhhccHHHHHHHHHHHH
Confidence 34444444444444443
No 400
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=63.15 E-value=1.1e+02 Score=27.11 Aligned_cols=119 Identities=8% Similarity=-0.019 Sum_probs=69.3
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCccChhhHHH-HHHHHhcCCChHHHHHHHHHHHHcCCCCCh---
Q 038748 347 DIQTYNILFEFLVKGRKLWEASGLFNEMVK----NENVLNHENCRA-AVRVYMDSDDPYVAIKFWKYMIENHCSDLS--- 418 (482)
Q Consensus 347 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~p~~--- 418 (482)
-...+..+...|++.++.+.+.++.++..+ .|.+.|.....+ +.-.|....-+++-++..+.|.++|-.-+.
T Consensus 114 ~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNR 193 (412)
T COG5187 114 GSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNR 193 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhh
Confidence 345667778889999988888877766544 366666443322 222344444477788888888888753332
Q ss_pred -hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Q 038748 419 -ETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKAR 467 (482)
Q Consensus 419 -~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 467 (482)
.+|..+. +....++.+|-.++.+....--......|...+....-.|
T Consensus 194 yK~Y~Gi~--~m~~RnFkeAa~Ll~d~l~tF~S~El~sY~~~vrYa~~~G 241 (412)
T COG5187 194 YKVYKGIF--KMMRRNFKEAAILLSDILPTFESSELISYSRAVRYAIFCG 241 (412)
T ss_pred HHHHHHHH--HHHHHhhHHHHHHHHHHhccccccccccHHHHHHHHHHhh
Confidence 2333222 2234667777777776654322233455666665444444
No 401
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=62.77 E-value=66 Score=24.47 Aligned_cols=43 Identities=7% Similarity=-0.130 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHH
Q 038748 401 VAIKFWKYMIENHCSDLS-ETGNLLVAGLCDMHMLPEAVKYAKG 443 (482)
Q Consensus 401 ~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~ 443 (482)
.+.++|+.|..+|+.-.. ..|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 777777777776664443 4556666666777777777777764
No 402
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=62.55 E-value=43 Score=27.71 Aligned_cols=33 Identities=18% Similarity=0.215 Sum_probs=19.7
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038748 309 FRPDTHMYNMMISLYCYSNETGAAMKLLDEMVY 341 (482)
Q Consensus 309 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 341 (482)
..|+..+|..++.++...|+.++|.+...++..
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 355666666666666666666666666555554
No 403
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=62.51 E-value=16 Score=18.39 Aligned_cols=25 Identities=16% Similarity=0.024 Sum_probs=13.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH
Q 038748 421 GNLLVAGLCDMHMLPEAVKYAKGMA 445 (482)
Q Consensus 421 ~~~li~~~~~~g~~~~A~~~~~~m~ 445 (482)
|..+...+...|++++|...+++..
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3444455555555555555555544
No 404
>KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]
Probab=61.84 E-value=2e+02 Score=29.79 Aligned_cols=59 Identities=17% Similarity=0.137 Sum_probs=32.0
Q ss_pred HHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhc
Q 038748 176 LLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEV 234 (482)
Q Consensus 176 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 234 (482)
++.-+.++|+.+.|.++.++.+...+.=...+.....++.+.-+...=.++-.++..+.
T Consensus 331 ~vyy~lR~G~lk~A~~~l~e~~~~~~~l~~~f~~y~~A~~~~~~~~le~qlrl~~~~~l 389 (835)
T KOG2168|consen 331 LVYYLLRCGDLKAASQFLNENKDFFEKLAELFPTYFNAYAKNLSSKLEKQLRLRLRSEL 389 (835)
T ss_pred HHHHHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhcCCCccccHHHHHHHHHHh
Confidence 56667788888888888877665322222223333566665544333334444444333
No 405
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=61.66 E-value=89 Score=31.17 Aligned_cols=30 Identities=13% Similarity=0.231 Sum_probs=17.9
Q ss_pred HHHHHHHHHhhCChhhHHHHHHHHHhcCCCC
Q 038748 138 FASVFSSYVVADRVKDAITTFDVMEQYGCKH 168 (482)
Q Consensus 138 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 168 (482)
...++.++. .|+...|+.+++.+.+.|..|
T Consensus 249 i~~l~~al~-~~d~~~al~~l~~l~~~g~d~ 278 (559)
T PRK05563 249 LDDLVDAIV-EGDVAKALKILEELLDEGKDP 278 (559)
T ss_pred HHHHHHHHH-ccCHHHHHHHHHHHHHcCCCH
Confidence 334444443 367777777777777766544
No 406
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=61.57 E-value=73 Score=31.86 Aligned_cols=28 Identities=11% Similarity=0.156 Sum_probs=17.4
Q ss_pred HHHHHHHhhCChhhHHHHHHHHHhcCCCC
Q 038748 140 SVFSSYVVADRVKDAITTFDVMEQYGCKH 168 (482)
Q Consensus 140 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 168 (482)
.++.++ ..++...++.+++.+...|..|
T Consensus 251 ~lv~al-~~~d~~~al~~l~~l~~~g~d~ 278 (584)
T PRK14952 251 DAVDAL-AADDAAALFGAIESVIDAGHDP 278 (584)
T ss_pred HHHHHH-HcCCHHHHHHHHHHHHHcCCCH
Confidence 344433 3477777888887777666543
No 407
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=61.34 E-value=39 Score=27.48 Aligned_cols=63 Identities=10% Similarity=-0.015 Sum_probs=35.6
Q ss_pred cHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCC-----------hhhHHHHHHHHHhcCCCCCHhhHHHHHHHHH
Q 038748 117 FDAMWDAIKSMKKENVLSLATFASVFSSYVVADR-----------VKDAITTFDVMEQYGCKHDVFALNSLLSAIC 181 (482)
Q Consensus 117 ~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-----------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 181 (482)
+++|+.-|++....++....++..+..+|...+. +++|...|+.... ..|+..+|+.-+....
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~ 124 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMAA 124 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHH
Confidence 3445555556666666666777777777766542 4445555555544 3577777777666653
No 408
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=61.31 E-value=1e+02 Score=26.11 Aligned_cols=29 Identities=21% Similarity=0.189 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 038748 314 HMYNMMISLYCYSNETGAAMKLLDEMVYN 342 (482)
Q Consensus 314 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 342 (482)
.||--|.+.|...|+.++|..+|+-....
T Consensus 238 EtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 238 ETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 34555666666667777777666666654
No 409
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=61.24 E-value=1.2e+02 Score=26.86 Aligned_cols=19 Identities=16% Similarity=0.092 Sum_probs=11.0
Q ss_pred HHHHHHHhcCChhHHHHHH
Q 038748 423 LLVAGLCDMHMLPEAVKYA 441 (482)
Q Consensus 423 ~li~~~~~~g~~~~A~~~~ 441 (482)
-++..+.+.|++.+|+.+.
T Consensus 130 Kli~l~y~~~~YsdalalI 148 (421)
T COG5159 130 KLIYLLYKTGKYSDALALI 148 (421)
T ss_pred HHHHHHHhcccHHHHHHHH
Confidence 3455566666666666543
No 410
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=61.07 E-value=1.3e+02 Score=27.40 Aligned_cols=122 Identities=7% Similarity=-0.104 Sum_probs=77.9
Q ss_pred cHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHh---cCChHhHHHHH
Q 038748 117 FDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICR---DGKTIDAWQFL 193 (482)
Q Consensus 117 ~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~---~g~~~~a~~~~ 193 (482)
.+.-+.++++..+.++.+...+...|..+.+..+.+...+.++.+..... -+...|...|..... .-.++....+|
T Consensus 47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~-~~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNP-GSPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCC-CChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 45667788888888887888888889988888888888888998888642 256677777665544 22455666655
Q ss_pred HHhh-------CCC----CCCHH-------HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC
Q 038748 194 RVVD-------GRI----KPDND-------TYAILLEGWEKERDVANAKKTFGEMVIEVGWDPD 239 (482)
Q Consensus 194 ~~~~-------~~~----~~~~~-------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~ 239 (482)
.+.. .+. .+-.. ++..+......+|..+.|..+++.+.+-.-+.|+
T Consensus 126 ~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~~P~ 189 (321)
T PF08424_consen 126 EKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFFRPE 189 (321)
T ss_pred HHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcCCcc
Confidence 5421 111 11111 2333333445678888888888877753223443
No 411
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=60.78 E-value=1.4e+02 Score=30.17 Aligned_cols=30 Identities=3% Similarity=0.067 Sum_probs=15.9
Q ss_pred hcCCCCCHHHHHHHHHhhcCCchhHhHHhh
Q 038748 60 KTLIRVSQETVEQVLKFSYSHPGPAVKFFR 89 (482)
Q Consensus 60 ~~~~~~~~~~~~~ll~~~~~~~~~a~~~~~ 89 (482)
..++.++...+..+.....|+...|+.+++
T Consensus 193 ~egi~id~eal~lIA~~s~GdlR~Al~lLe 222 (624)
T PRK14959 193 REGVDYDPAAVRLIARRAAGSVRDSMSLLG 222 (624)
T ss_pred HcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 344555555555555555555555555554
No 412
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=60.29 E-value=1.3e+02 Score=27.14 Aligned_cols=135 Identities=9% Similarity=0.071 Sum_probs=80.0
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCH
Q 038748 273 CNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVY----NGAFPDI 348 (482)
Q Consensus 273 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~g~~p~~ 348 (482)
+..|...++.+..+ +..++++..+..+...+..|-.--...+-....-||+.|+-+.|++.+.+-.+ .|.+.|.
T Consensus 66 i~~D~~~l~~m~~~--neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDV 143 (393)
T KOG0687|consen 66 IKLDQDLLNSMKKA--NEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDV 143 (393)
T ss_pred eeccHHHHHHHHHh--hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhh
Confidence 44555555555432 22334444455555533333333345667777889999999999988876554 4777777
Q ss_pred hhHHHHHHHH-HhcCCHHHHHHHHHHHHhCCCccChh----hHHHHHHHHhcCCChHHHHHHHHHHHH
Q 038748 349 QTYNILFEFL-VKGRKLWEASGLFNEMVKNENVLNHE----NCRAAVRVYMDSDDPYVAIKFWKYMIE 411 (482)
Q Consensus 349 ~~~~~ll~~~-~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~li~~~~~~~~~~~a~~~~~~m~~ 411 (482)
..+.+-+..+ ....-+.+-.+..+.+.+.|..-+.. +|..+- |....++.+|-.+|-+...
T Consensus 144 vf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly--~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 144 VFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLY--CMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHH--HHHHHhHHHHHHHHHHHcc
Confidence 6665444333 33333556666667777777654433 343333 3345678888888877653
No 413
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=59.87 E-value=1.2e+02 Score=29.88 Aligned_cols=32 Identities=6% Similarity=0.123 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCC
Q 038748 136 ATFASVFSSYVVADRVKDAITTFDVMEQYGCKH 168 (482)
Q Consensus 136 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 168 (482)
.....++.++ ..++++.|+.+++.+...|..|
T Consensus 243 ~~if~Li~al-~~~d~~~Al~~l~~Ll~~G~~~ 274 (504)
T PRK14963 243 ERLRGIAAAL-AQGDAAEALSGAAQLYRDGFAA 274 (504)
T ss_pred HHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCH
Confidence 3344555555 4488888888888888877544
No 414
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=59.85 E-value=1.1e+02 Score=26.24 Aligned_cols=116 Identities=9% Similarity=-0.030 Sum_probs=58.7
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhh-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHH-HHHHHHhcCCChH
Q 038748 323 YCYSNETGAAMKLLDEMVYNGAFPDIQT-YNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCR-AAVRVYMDSDDPY 400 (482)
Q Consensus 323 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~li~~~~~~~~~~ 400 (482)
|....+++.|...|.+... +.|+..+ |+.=+.++.+..+++.+..=-...++ +.||..--. .+..+......++
T Consensus 20 ~f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhcccc
Confidence 3344556677776655554 3565533 34445555666667666655554444 344443322 3344455666777
Q ss_pred HHHHHHHHHHH----cCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 038748 401 VAIKFWKYMIE----NHCSDLSETGNLLVAGLCDMHMLPEAVKYAK 442 (482)
Q Consensus 401 ~a~~~~~~m~~----~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 442 (482)
+|+..+.+... ..+.+-...+..|..+=-+.=...+..++.+
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q 141 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQ 141 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHH
Confidence 77777766632 2233333455555444322223333444443
No 415
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=59.54 E-value=68 Score=25.15 Aligned_cols=63 Identities=16% Similarity=0.148 Sum_probs=37.9
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCC
Q 038748 123 AIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGK 185 (482)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 185 (482)
+.+.+.+.|.--+..-..++..+.+.+..-.|.++++.+.+.+...+..|.-..++.+...|-
T Consensus 8 ~~~~lk~~glr~T~qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 8 AIERLKEAGLRLTPQRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHHcCCCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 444555566533344566677777776667777777777776655555554444555555553
No 416
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=59.36 E-value=1.6e+02 Score=27.69 Aligned_cols=95 Identities=9% Similarity=0.100 Sum_probs=57.5
Q ss_pred CCHHHHHHHHHhhcCCchhHhHHhhhhhcCCCCCCCH-hhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 038748 65 VSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSP-YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFS 143 (482)
Q Consensus 65 ~~~~~~~~ll~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~ 143 (482)
++......++..+.||...|+..++.+.. ..+++. .+ .+...+++.+-....-.+-..+.-+|+
T Consensus 190 i~~~a~~~l~~~s~GD~R~aLN~LE~~~~--~~~~~~~~~-------------~~~l~~~l~~~~~~~Dk~gD~hYdliS 254 (436)
T COG2256 190 LDEEALDYLVRLSNGDARRALNLLELAAL--SAEPDEVLI-------------LELLEEILQRRSARFDKDGDAHYDLIS 254 (436)
T ss_pred CCHHHHHHHHHhcCchHHHHHHHHHHHHH--hcCCCcccC-------------HHHHHHHHhhhhhccCCCcchHHHHHH
Confidence 67778888888888888888888886554 222322 11 122222222222222234344555677
Q ss_pred HHHhh---CChhhHHHHHHHHHhcCCCCCHhhHH
Q 038748 144 SYVVA---DRVKDAITTFDVMEQYGCKHDVFALN 174 (482)
Q Consensus 144 ~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~ 174 (482)
++.+. .+++.|+-++-.|.+.|-.|--..-.
T Consensus 255 A~hKSvRGSD~dAALyylARmi~~GeDp~yiARR 288 (436)
T COG2256 255 ALHKSVRGSDPDAALYYLARMIEAGEDPLYIARR 288 (436)
T ss_pred HHHHhhccCCcCHHHHHHHHHHhcCCCHHHHHHH
Confidence 77554 78999999999999988655433333
No 417
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=59.28 E-value=24 Score=18.36 Aligned_cols=25 Identities=4% Similarity=-0.069 Sum_probs=11.3
Q ss_pred CcHHHHHHHHHHHhcCCCCHHHHHH
Q 038748 116 LFDAMWDAIKSMKKENVLSLATFAS 140 (482)
Q Consensus 116 ~~~~a~~~~~~~~~~~~~~~~~~~~ 140 (482)
+.+.|..+|+.+....+.+...|..
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~ 26 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLK 26 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHH
Confidence 3444555555555444334444433
No 418
>PRK09687 putative lyase; Provisional
Probab=59.17 E-value=1.3e+02 Score=26.77 Aligned_cols=233 Identities=8% Similarity=-0.053 Sum_probs=117.0
Q ss_pred CCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCH----HHHHHHHHHhHHhcCCCCCChhh
Q 038748 168 HDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDV----ANAKKTFGEMVIEVGWDPDNVPA 243 (482)
Q Consensus 168 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~p~~~~~ 243 (482)
+|.......+.++...|..+-...+...+. .+|...-...+.++.+.|+. .++...+..+..+ .| +...
T Consensus 35 ~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~---D~-d~~V 107 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQDVFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE---DK-SACV 107 (280)
T ss_pred CCHHHHHHHHHHHHhcCcchHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc---CC-CHHH
Confidence 344444445555555554322222222222 23444445555555555542 3455555544221 22 2233
Q ss_pred HHHHHHHHHccCCC-----hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHH
Q 038748 244 YDSYLITLLKGCDG-----IYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNM 318 (482)
Q Consensus 244 ~~~l~~~~~~~~~~-----~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 318 (482)
-...+.++... +. ...+.+.+..... .++..+-...+.++++.++. .+...+-.+++ .+|..+-..
T Consensus 108 R~~A~~aLG~~-~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~~-~ai~~L~~~L~----d~~~~VR~~ 178 (280)
T PRK09687 108 RASAINATGHR-CKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVINDE-AAIPLLINLLK----DPNGDVRNW 178 (280)
T ss_pred HHHHHHHHhcc-cccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCCH-HHHHHHHHHhc----CCCHHHHHH
Confidence 33333333333 11 1122333322222 23555555667777777764 45555555542 334455555
Q ss_pred HHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCC
Q 038748 319 MISLYCYSN-ETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSD 397 (482)
Q Consensus 319 li~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 397 (482)
.+.++...+ +...+...+..+... ++...-...+.++.+.|+. .+...+-...+.+. .....+.++...|
T Consensus 179 A~~aLg~~~~~~~~~~~~L~~~L~D---~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~~-----~~~~a~~ALg~ig 249 (280)
T PRK09687 179 AAFALNSNKYDNPDIREAFVAMLQD---KNEEIRIEAIIGLALRKDK-RVLSVLIKELKKGT-----VGDLIIEAAGELG 249 (280)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHhcC---CChHHHHHHHHHHHccCCh-hHHHHHHHHHcCCc-----hHHHHHHHHHhcC
Confidence 555666543 234566666666643 5666677777888888774 45555555555432 2346777777888
Q ss_pred ChHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 038748 398 DPYVAIKFWKYMIENHCSDLSETGNLLVAGL 428 (482)
Q Consensus 398 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 428 (482)
+. +|...+..+.+.. ||..+-...+.++
T Consensus 250 ~~-~a~p~L~~l~~~~--~d~~v~~~a~~a~ 277 (280)
T PRK09687 250 DK-TLLPVLDTLLYKF--DDNEIITKAIDKL 277 (280)
T ss_pred CH-hHHHHHHHHHhhC--CChhHHHHHHHHH
Confidence 75 5777777777532 4554444444443
No 419
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=59.11 E-value=57 Score=32.43 Aligned_cols=75 Identities=15% Similarity=0.099 Sum_probs=52.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC--CccChhhHHHHHHHHhcCCChHH------HHHHHHHHHHcCCCCChhhHHHH
Q 038748 353 ILFEFLVKGRKLWEASGLFNEMVKNE--NVLNHENCRAAVRVYMDSDDPYV------AIKFWKYMIENHCSDLSETGNLL 424 (482)
Q Consensus 353 ~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~------a~~~~~~m~~~~~~p~~~~~~~l 424 (482)
+++.+|...|++..+.++++.....+ -+.-...||..|+.+.+.|.++- |.+.++... +.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 78999999999999999999987653 23334578888999999887652 333333332 44566788877
Q ss_pred HHHHHh
Q 038748 425 VAGLCD 430 (482)
Q Consensus 425 i~~~~~ 430 (482)
+.+-..
T Consensus 110 ~~~sln 115 (1117)
T COG5108 110 CQASLN 115 (1117)
T ss_pred HHhhcC
Confidence 766443
No 420
>PF08314 Sec39: Secretory pathway protein Sec39; InterPro: IPR013244 Sec39 was originally identified as a protein involved in ER-Golgi transport in a large scale promoter shut down analysis of essential yeast genes []. A subsequent study found that Sec39p (Dsl3p) is required for Golgi-ER retrograde transport and is part of a very stable protein complex that also includes Dsl1p (in mammals ZW10), Tip20p (Rint-1) and the ER localized Q-SNARE proteins Ufe1p (syntaxin-18), Sec20p and Use1p []. This was confirmed in a genome-wide analysis of protein complexes []. ; PDB: 3K8P_D.
Probab=58.80 E-value=1.6e+02 Score=30.56 Aligned_cols=217 Identities=8% Similarity=-0.030 Sum_probs=0.0
Q ss_pred CchhHhHHhhhhhcCC---CCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh---------
Q 038748 80 HPGPAVKFFRWSAYQL---NDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVV--------- 147 (482)
Q Consensus 80 ~~~~a~~~~~~~~~~~---~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~--------- 147 (482)
+|...+.-+.|+.... +.-+.......++.++...|+++.|.+++..-.....+.......++.++..
T Consensus 408 ~W~~l~~~ll~l~~~~~~f~~l~~~~~~~~~l~~LL~~~~f~la~~~~~~~~~~~l~~~~~~~lvl~~~~e~fd~Asn~n 487 (715)
T PF08314_consen 408 DWKQLLNDLLWLQDWGGVFGCLSKDEIEEIFLEALLSSGRFSLAKSLYEESSSSPLSSEKVEDLVLKAAWEFFDNASNGN 487 (715)
T ss_dssp HHHHHHTTT-TTS--S-SSTTS-HHHHHHHHHHHHHHTT-HHHHHHHHHHTT---TT-HHHHHHHHHHHHHHHHH-SS--
T ss_pred HHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHHHhcCCCCC
Q ss_pred --hCChhhHHHHHHHHHhc---CCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 038748 148 --ADRVKDAITTFDVMEQY---GCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVAN 222 (482)
Q Consensus 148 --~~~~~~a~~~~~~~~~~---~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 222 (482)
.|..+.|.++++-+... . +...-...|+.+.....++.- .++.|.+..+.-. .-...
T Consensus 488 ~~~g~lk~A~~~L~l~~~~~~~~--~~~~~~~~Li~a~~~Ls~f~l------~l~~g~p~~P~~i----------r~~~d 549 (715)
T PF08314_consen 488 RTRGGLKKARECLNLFPPTFPNS--PRIQREKDLIKATHALSEFSL------VLQPGVPFLPVQI----------RLHSD 549 (715)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHTTS-----------------HHHH----------HTTT-
T ss_pred CCChHHHHHHHHHHhccCcCCcc--HHHHHHHHHHHHHHHHHhCCe------ecCCCCCCCCcee----------eccCC
Q ss_pred HHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHc---------CCCCCHHHHHHHHHHHHhcCCh
Q 038748 223 AKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMER---------GCNPGMTFFKLAFEECLTGQNL 293 (482)
Q Consensus 223 a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~---------~~~~~~~~~~~li~~~~~~g~~ 293 (482)
-..+...+.+. +..+| .++++.+++.+.|... ...-...+....|++....+++
T Consensus 550 pl~LI~~vLe~------np~aY-----------~~~~~ll~l~~~L~~~~~~~~~~~~~~~~~~ri~~~~i~~AL~~~Df 612 (715)
T PF08314_consen 550 PLSLISKVLEQ------NPKAY-----------KQLEKLLDLANNLVLAGSDESSESDDEAAERRILSMCIEAALVEDDF 612 (715)
T ss_dssp THHHHHHHHHH------STTGG-----------G-HHHHHHHHHHHHHH-----TT---SSTHHHHHHHHHHHHHHTT-H
T ss_pred hHHHHHHHHHh------Cchhh-----------cCHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHcCCH
Q ss_pred hHHHHHHHHhhcccCCCCCHH-HHHHHHHHHHhcCCHHH
Q 038748 294 RGAEFIWGAMVGRIGFRPDTH-MYNMMISLYCYSNETGA 331 (482)
Q Consensus 294 ~~a~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~ 331 (482)
+.|.+.-.++.+.....++.. .+...=.++.+.|++..
T Consensus 613 ~~Ay~~~~~ll~~~~~~~~~~~~~~~~W~~~~q~Gk~~~ 651 (715)
T PF08314_consen 613 ETAYSYCLELLDPPSDASSSSPNDDESWRTCYQVGKYRS 651 (715)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHhhcccccccCCCChHHHHHHHHhCCCC
No 421
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=58.79 E-value=29 Score=22.39 Aligned_cols=21 Identities=24% Similarity=0.148 Sum_probs=9.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 038748 354 LFEFLVKGRKLWEASGLFNEM 374 (482)
Q Consensus 354 ll~~~~~~g~~~~a~~~~~~~ 374 (482)
+|.++...|++++|.++++.+
T Consensus 29 vI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 29 VIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 344444444444444444444
No 422
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=58.55 E-value=31 Score=22.23 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=14.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHH
Q 038748 423 LLVAGLCDMHMLPEAVKYAKGMA 445 (482)
Q Consensus 423 ~li~~~~~~g~~~~A~~~~~~m~ 445 (482)
.+|.+|...|++++|.++++++.
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 45666777777777777666654
No 423
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=58.48 E-value=93 Score=28.03 Aligned_cols=120 Identities=8% Similarity=-0.007 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 038748 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFI 299 (482)
Q Consensus 220 ~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 299 (482)
+.+|+++|++..+. ...+|+ +. .+...--...+.+.+++...-...-..+.-+..+.|+..+|.+.
T Consensus 232 i~~AE~l~k~ALka------~e~~yr-------~s-qq~qh~~~~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~ 297 (556)
T KOG3807|consen 232 IVDAERLFKQALKA------GETIYR-------QS-QQCQHQSPQHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKI 297 (556)
T ss_pred HHHHHHHHHHHHHH------HHHHHh-------hH-HHHhhhccchhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHH
Q ss_pred HHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHH
Q 038748 300 WGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNI 353 (482)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 353 (482)
|.++.++..+..-..+...||.++....-+.++..++-+..+-..+.+......
T Consensus 298 ~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdislPkSA~icYT 351 (556)
T KOG3807|consen 298 MRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDISLPKSAAICYT 351 (556)
T ss_pred HHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcchHHHHHH
No 424
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=58.44 E-value=88 Score=28.06 Aligned_cols=113 Identities=12% Similarity=0.075 Sum_probs=60.7
Q ss_pred HHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC
Q 038748 283 AFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGR 362 (482)
Q Consensus 283 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 362 (482)
++....+.++.....+.+..+. ....-...+..+...|++..|++++.+..+. .. ....|+++=.. ..
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~-------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~-l~-~l~~~~c~~~L---~~ 171 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIK-------TVQQTQSRLQELLEEGDYPGALDLIEECQQL-LE-ELKGYSCVRHL---SS 171 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-HH-hcccchHHHHH---hH
Confidence 4445555555555555555553 2334455566677888888888888776653 10 11112111111 11
Q ss_pred CHHHHHHHHHHHHhC-----CCccChhhHHHHHHHHhcCCChHHHHHHHH
Q 038748 363 KLWEASGLFNEMVKN-----ENVLNHENCRAAVRVYMDSDDPYVAIKFWK 407 (482)
Q Consensus 363 ~~~~a~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 407 (482)
++++-....+++.+. -...|+..|..++.+|.-.|+.+.+.+-+.
T Consensus 172 ~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dkl~ 221 (291)
T PF10475_consen 172 QLQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDKLQ 221 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 233333333333222 114577788999999988888776664433
No 425
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=57.83 E-value=4.6e+02 Score=32.62 Aligned_cols=91 Identities=12% Similarity=0.052 Sum_probs=46.5
Q ss_pred CHHHHHHHHHhhcCCchhHhHHhhhhhcC---CCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHH
Q 038748 66 SQETVEQVLKFSYSHPGPAVKFFRWSAYQ---LNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVF 142 (482)
Q Consensus 66 ~~~~~~~ll~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li 142 (482)
.+..+...+....|-|..++.+++..... .....+.....++...|......|.-.-+|++ ...-.+| ...
T Consensus 2416 lpp~Li~yl~kt~~~wh~~I~lLE~~~~~~~~~~~~~~~~~~dsl~elY~~L~E~Dm~~Glwrr----r~~~~eT--~~a 2489 (3550)
T KOG0889|consen 2416 LPPHLIKYLGKTYNLWHTSIRLLEDHQSNKEMENTKGDESCLDSLAELYRSLNEEDMFYGLWRR----RAKFPET--MVA 2489 (3550)
T ss_pred CCHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHH----hhccHHH--HHH
Confidence 34444444544555566777666632221 11334556666666666665554443333332 1111111 223
Q ss_pred HHHHhhCChhhHHHHHHHHH
Q 038748 143 SSYVVADRVKDAITTFDVME 162 (482)
Q Consensus 143 ~~~~~~~~~~~a~~~~~~~~ 162 (482)
..|.+.|.+++|..+|++..
T Consensus 2490 ~s~eQ~G~~e~AQ~lyekaq 2509 (3550)
T KOG0889|consen 2490 LSYEQLGFWEEAQSLYEKAQ 2509 (3550)
T ss_pred HHHHHhhhHHHHhhHHHHHH
Confidence 34566677777777777654
No 426
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=57.69 E-value=1.3e+02 Score=30.59 Aligned_cols=35 Identities=17% Similarity=0.201 Sum_probs=21.1
Q ss_pred HhhhcCCCCCHHHHHHHHHhhcCCchhHhHHhhhh
Q 038748 57 VLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWS 91 (482)
Q Consensus 57 ~l~~~~~~~~~~~~~~ll~~~~~~~~~a~~~~~~~ 91 (482)
.+.+.|+..+...+..+.+.+.|+...|+.+++.+
T Consensus 189 Il~kEgI~id~eAL~~IA~~S~GdLRdALnLLDQa 223 (702)
T PRK14960 189 ILEKEQIAADQDAIWQIAESAQGSLRDALSLTDQA 223 (702)
T ss_pred HHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 33455666666666666666666666666665543
No 427
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=57.17 E-value=2e+02 Score=28.24 Aligned_cols=60 Identities=15% Similarity=0.227 Sum_probs=41.5
Q ss_pred CCchHHHHHHHhhCCCCc--c----HHHHhhhcCCCCCHHHHHHHHHhhcCCchhHhHHhhhhhcC
Q 038748 35 LPPTIKTLCEIIANTPSP--T----VEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQ 94 (482)
Q Consensus 35 ~~~~~~~~~~~l~~~~~~--~----~~~~l~~~~~~~~~~~~~~ll~~~~~~~~~a~~~~~~~~~~ 94 (482)
.++.+.+-|+.+.-.+.+ . +...+.+.++..+...+..+.+...|...+|+.+++.+...
T Consensus 162 ip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~Gs~RDalslLDq~i~~ 227 (515)
T COG2812 162 IPNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEGSLRDALSLLDQAIAF 227 (515)
T ss_pred CchhhhhccccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCCChhhHHHHHHHHHHc
Confidence 344444445444433332 1 55666678888999888888888888889999999887763
No 428
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=57.01 E-value=56 Score=28.43 Aligned_cols=58 Identities=12% Similarity=0.024 Sum_probs=36.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHH----HcCC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHh
Q 038748 423 LLVAGLCDMHMLPEAVKYAKGMA----EKGI-QVTPFALSKLKQILIKARKEAVYEELLKKCK 480 (482)
Q Consensus 423 ~li~~~~~~g~~~~A~~~~~~m~----~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 480 (482)
.+...|.+.|++++|.++|+.+. +.|. .+...+...+..++.+.|+.+....+.=+|.
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 34556677777777777777663 2232 3444566667777777777777776655543
No 429
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.83 E-value=1.3e+02 Score=25.87 Aligned_cols=29 Identities=7% Similarity=0.159 Sum_probs=19.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCccC
Q 038748 354 LFEFLVKGRKLWEASGLFNEMVKNENVLN 382 (482)
Q Consensus 354 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 382 (482)
+...-...+++.+|..+|+++....+..+
T Consensus 160 vA~yaa~leqY~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 160 VAQYAAQLEQYSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 33344567788888998888877655433
No 430
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=56.75 E-value=1.1e+02 Score=30.11 Aligned_cols=131 Identities=8% Similarity=-0.184 Sum_probs=88.3
Q ss_pred hhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhhCChhhHHHHHHH
Q 038748 82 GPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASVFSSYVVADRVKDAITTFDV 160 (482)
Q Consensus 82 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~ 160 (482)
+-+..+|..|.+ ...|--...|...-..--.|+...|...+.......+ ........|.+.+.+.|....|..++.+
T Consensus 590 e~~~~~~~~~~~--~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q 667 (886)
T KOG4507|consen 590 EIGSFLFHAINK--PNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQ 667 (886)
T ss_pred HHHHHHHHHhcC--CCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHH
Confidence 334445555544 3334334444333333446888899988887766554 2334456677777888888899999888
Q ss_pred HHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 038748 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWE 215 (482)
Q Consensus 161 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 215 (482)
..... ...+-++-.+-+++....+++.|++.|+...+..+.+.+.-+.|...-|
T Consensus 668 ~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 668 ALAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 77765 3455677778899999999999999999865555666777777665544
No 431
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=56.09 E-value=2e+02 Score=27.97 Aligned_cols=33 Identities=18% Similarity=0.204 Sum_probs=21.6
Q ss_pred HHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHh
Q 038748 138 FASVFSSYVVADRVKDAITTFDVMEQYGCKHDVF 171 (482)
Q Consensus 138 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 171 (482)
...++.+. +.++++.|..++..|...|..|...
T Consensus 247 i~~li~si-~~~d~~~Al~~l~~ll~~Gedp~~i 279 (472)
T PRK14962 247 VRDYINAI-FNGDVKRVFTVLDDVYYSGKDYEVL 279 (472)
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHHcCCCHHHH
Confidence 33444433 4578888888888888877665543
No 432
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=56.04 E-value=2.2e+02 Score=28.28 Aligned_cols=26 Identities=15% Similarity=0.230 Sum_probs=16.2
Q ss_pred HHHHHHHhhCChhhHHHHHHHHHhcCC
Q 038748 140 SVFSSYVVADRVKDAITTFDVMEQYGC 166 (482)
Q Consensus 140 ~li~~~~~~~~~~~a~~~~~~~~~~~~ 166 (482)
.++.++. .++...++.+++.+.+.|.
T Consensus 251 ~ll~al~-~~~~~~~l~~~~~l~~~~~ 276 (527)
T PRK14969 251 ALLEALL-AQDGAALLAIADAMEERSL 276 (527)
T ss_pred HHHHHHH-cCCHHHHHHHHHHHHHhCC
Confidence 3444443 4667777777777776654
No 433
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=55.85 E-value=1.5e+02 Score=30.19 Aligned_cols=35 Identities=9% Similarity=0.057 Sum_probs=26.5
Q ss_pred hhhcCCCCCHHHHHHHHHhhcCCchhHhHHhhhhh
Q 038748 58 LDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSA 92 (482)
Q Consensus 58 l~~~~~~~~~~~~~~ll~~~~~~~~~a~~~~~~~~ 92 (482)
+...++..+...+..+.+.+.|++..|+.+++...
T Consensus 191 l~~e~i~~e~~aL~~Ia~~s~Gs~R~Al~lldqai 225 (647)
T PRK07994 191 LQAEQIPFEPRALQLLARAADGSMRDALSLTDQAI 225 (647)
T ss_pred HHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 34457888888887777788888888888887544
No 434
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=55.66 E-value=1.8e+02 Score=27.25 Aligned_cols=58 Identities=12% Similarity=0.212 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHhhCChhhHHHHHHHHHhc--CCCCCHhhHHHHHHHHHhcCChHhHHHHH
Q 038748 136 ATFASVFSSYVVADRVKDAITTFDVMEQY--GCKHDVFALNSLLSAICRDGKTIDAWQFL 193 (482)
Q Consensus 136 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 193 (482)
..+.-+.+.|..+|+++.|++.|-+.... ..+-.+..|-.+|..-.-.|+|.....+.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~ 210 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYI 210 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHH
Confidence 34455555555555555555555553332 01112233444444444445544444433
No 435
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=55.64 E-value=2.3e+02 Score=28.44 Aligned_cols=114 Identities=11% Similarity=-0.014 Sum_probs=27.8
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHc----CCCCChhhH
Q 038748 346 PDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIEN----HCSDLSETG 421 (482)
Q Consensus 346 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p~~~~~ 421 (482)
.+......++..|.+.|-.+.+..+.+.+-..-. ...-|..-+..+.++|+......+.+.+.+. |...+....
T Consensus 403 ~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll~~~~~~~~~~~~~ll 480 (566)
T PF07575_consen 403 DTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLLEEYCNNGEPLDDDLL 480 (566)
T ss_dssp -SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH-------------------------------
T ss_pred CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHhcCCCcccHHHH
Confidence 3455566677777777777777777766554322 2234556666677777776666555554422 211111111
Q ss_pred HH----------------HHH--HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 038748 422 NL----------------LVA--GLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQ 461 (482)
Q Consensus 422 ~~----------------li~--~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~ 461 (482)
+. +-. -..+.|++.+|.+.+-.+...++.|...-...|.+
T Consensus 481 ~~i~~~~~~~~~L~fla~yreF~~~~~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~d 538 (566)
T PF07575_consen 481 DNIGSPMLLSQRLSFLAKYREFYELYDEGDFREAASLLVSLLKSPIAPKSFWPLLLCD 538 (566)
T ss_dssp ----------------------------------------------------------
T ss_pred HHhcchhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHCCCCCcHHHHHHHHHH
Confidence 11 000 01244777777777777777776666655544444
No 436
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=55.46 E-value=1.8e+02 Score=27.23 Aligned_cols=17 Identities=18% Similarity=0.159 Sum_probs=11.1
Q ss_pred cCCHHHHHHHHHHHHhC
Q 038748 361 GRKLWEASGLFNEMVKN 377 (482)
Q Consensus 361 ~g~~~~a~~~~~~~~~~ 377 (482)
.+++...+++++++...
T Consensus 317 ~sky~~cl~~L~~~k~~ 333 (466)
T KOG0686|consen 317 SSKYASCLELLREIKPR 333 (466)
T ss_pred hhhHHHHHHHHHHhccc
Confidence 35677777777776543
No 437
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=55.24 E-value=1.4e+02 Score=27.07 Aligned_cols=79 Identities=18% Similarity=0.124 Sum_probs=41.5
Q ss_pred HHHHHHhcCChHhHHHHHHHhhC----CCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHhHHh----cCCCCCChhhHH
Q 038748 176 LLSAICRDGKTIDAWQFLRVVDG----RIKPDNDTYA--ILLEGWEKERDVANAKKTFGEMVIE----VGWDPDNVPAYD 245 (482)
Q Consensus 176 ll~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~p~~~~~~~ 245 (482)
++...-+.++.++|.++++++.. .-.|+.+.|. .+..++...||..++.+.+++..+. .++.|.-...|+
T Consensus 81 ~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY 160 (380)
T KOG2908|consen 81 LLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFY 160 (380)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHH
Confidence 33444455567777777666543 2345555544 3345555667777777776665531 244442223345
Q ss_pred HHHHHHHcc
Q 038748 246 SYLITLLKG 254 (482)
Q Consensus 246 ~l~~~~~~~ 254 (482)
.+-.-|.+.
T Consensus 161 ~lssqYyk~ 169 (380)
T KOG2908|consen 161 SLSSQYYKK 169 (380)
T ss_pred HHHHHHHHH
Confidence 555555444
No 438
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=55.16 E-value=1.3e+02 Score=25.55 Aligned_cols=67 Identities=7% Similarity=-0.009 Sum_probs=29.1
Q ss_pred CCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCC--CCHHHH--HHHHHHHHhhCChhhHHHHHHHHH
Q 038748 96 NDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENV--LSLATF--ASVFSSYVVADRVKDAITTFDVME 162 (482)
Q Consensus 96 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~--~~li~~~~~~~~~~~a~~~~~~~~ 162 (482)
.+.+...-+|.||--|.-...+.+|.+.|..-..-.+ .+...+ ..-|......|+.+.|++..+.+-
T Consensus 21 ~~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~ 91 (228)
T KOG2659|consen 21 KVSVMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLN 91 (228)
T ss_pred ccCcchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhC
Confidence 3444444455554444444444444444332221111 122222 233445556666666666655553
No 439
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=55.02 E-value=1.7e+02 Score=26.69 Aligned_cols=68 Identities=13% Similarity=0.210 Sum_probs=40.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHhhHH--HHHHHHHhcCCHHHHHHHHHHHHh-----CCCccChh
Q 038748 317 NMMISLYCYSNETGAAMKLLDEMVYN---GAFPDIQTYN--ILFEFLVKGRKLWEASGLFNEMVK-----NENVLNHE 384 (482)
Q Consensus 317 ~~li~~~~~~~~~~~a~~~~~~m~~~---g~~p~~~~~~--~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~ 384 (482)
..++...-+.++.++|+++++++.+. --.|+.+.|. .+...+...|+..++.+++.+..+ .++.|+.+
T Consensus 79 ei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh 156 (380)
T KOG2908|consen 79 EILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVH 156 (380)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhh
Confidence 33444555566788888888877653 1234555443 334445567788888887777766 45555433
No 440
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=54.13 E-value=1.4e+02 Score=25.61 Aligned_cols=36 Identities=17% Similarity=0.125 Sum_probs=19.6
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccC
Q 038748 346 PDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLN 382 (482)
Q Consensus 346 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 382 (482)
|.+.....++..|. .+++++|.+++.++-+.|..|.
T Consensus 237 PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~ 272 (333)
T KOG0991|consen 237 PHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPE 272 (333)
T ss_pred CChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHH
Confidence 45555555555443 3356666666666666665543
No 441
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=53.98 E-value=56 Score=23.99 Aligned_cols=37 Identities=16% Similarity=0.180 Sum_probs=26.1
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 038748 107 VVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFS 143 (482)
Q Consensus 107 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~ 143 (482)
+|+.+-++...++|+++++.|.++|-.+...-+.|-.
T Consensus 67 ViD~lrRC~T~EEALEVInylek~GEIt~e~A~eLr~ 103 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRGEITPEEAKELRS 103 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 4556667778889999999999988766554444433
No 442
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=53.96 E-value=56 Score=21.37 Aligned_cols=54 Identities=13% Similarity=0.130 Sum_probs=37.0
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccH
Q 038748 415 SDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKE 469 (482)
Q Consensus 415 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~ 469 (482)
.|....++.++..+++..-.++++.++.++...|. .+..+|..-++.+++..=+
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaReQF~ 58 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAREQFL 58 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHH
Confidence 35556777777777777778888888888887775 5666776666666665433
No 443
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=53.86 E-value=1.5e+02 Score=25.90 Aligned_cols=204 Identities=9% Similarity=0.007 Sum_probs=114.9
Q ss_pred CCCCCHhhHHHHHHHH-hhCCCcHHHHHHHHHHHhcCC----CCHHHHHHHHHHHHhhCChhhHHHHHHHHHhc---CC-
Q 038748 96 NDKHSPYAWNLVVDLL-GKNCLFDAMWDAIKSMKKENV----LSLATFASVFSSYVVADRVKDAITTFDVMEQY---GC- 166 (482)
Q Consensus 96 ~~~~~~~~~~~li~~~-~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~- 166 (482)
+..||+..=|..-..- .+..++++|+.-|.+..+... -.-.+...+|....+.|++++..+.+.++... .+
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 4556665544433222 234467888888887766542 23445666778888888888888888777531 11
Q ss_pred -CCCHhhHHHHHHHHHhcCChHhHHHHHHHh----hC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC
Q 038748 167 -KHDVFALNSLLSAICRDGKTIDAWQFLRVV----DG--RIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPD 239 (482)
Q Consensus 167 -~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~----~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~ 239 (482)
.-+..+.|+++.-...+.+.+...++|+.- +. +-+.--.|-.-+...|...+.+.+..+++.++... +..+
T Consensus 101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~S--Cq~e 178 (440)
T KOG1464|consen 101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQS--CQTE 178 (440)
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHH--hccc
Confidence 124456677777777666666666666542 11 11111223345666777778888888888777542 1111
Q ss_pred -----------ChhhHHHHHHHHHccCCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHH-----hcCChhHHHHHHHH
Q 038748 240 -----------NVPAYDSYLITLLKGCDGIYETVNSLKRMMERG-CNPGMTFFKLAFEECL-----TGQNLRGAEFIWGA 302 (482)
Q Consensus 240 -----------~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~-----~~g~~~~a~~~~~~ 302 (482)
-...|..-|..|... .+-.....+|++...-. -.|.+. ...+|+-|+ +.|.+++|..-|-+
T Consensus 179 dGedD~kKGtQLLEiYAlEIQmYT~q-KnNKkLK~lYeqalhiKSAIPHPl-ImGvIRECGGKMHlreg~fe~AhTDFFE 256 (440)
T KOG1464|consen 179 DGEDDQKKGTQLLEIYALEIQMYTEQ-KNNKKLKALYEQALHIKSAIPHPL-IMGVIRECGGKMHLREGEFEKAHTDFFE 256 (440)
T ss_pred cCchhhhccchhhhhHhhHhhhhhhh-cccHHHHHHHHHHHHhhccCCchH-HHhHHHHcCCccccccchHHHHHhHHHH
Confidence 123455556666666 66666667777654322 223332 233444443 56778777644433
Q ss_pred h
Q 038748 303 M 303 (482)
Q Consensus 303 ~ 303 (482)
.
T Consensus 257 A 257 (440)
T KOG1464|consen 257 A 257 (440)
T ss_pred H
Confidence 3
No 444
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=53.86 E-value=2.5e+02 Score=28.36 Aligned_cols=29 Identities=17% Similarity=0.291 Sum_probs=18.8
Q ss_pred HHHHHHHhhCChhhHHHHHHHHHhcCCCCC
Q 038748 140 SVFSSYVVADRVKDAITTFDVMEQYGCKHD 169 (482)
Q Consensus 140 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 169 (482)
.++.+. ..|+.+.|+.+++.+...|..|-
T Consensus 264 ~L~~ai-~~gd~~~Al~~l~~l~~~G~~p~ 292 (598)
T PRK09111 264 DLFEAL-MRGDVAAALAEFRAQYDAGADPV 292 (598)
T ss_pred HHHHHH-HcCCHHHHHHHHHHHHHcCCCHH
Confidence 444433 33788888888888877765543
No 445
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=53.80 E-value=97 Score=23.57 Aligned_cols=41 Identities=7% Similarity=-0.018 Sum_probs=20.2
Q ss_pred HHHHHHHHHHhcCC--CCHHHHHHHHHHHHhhCChhhHHHHHH
Q 038748 119 AMWDAIKSMKKENV--LSLATFASVFSSYVVADRVKDAITTFD 159 (482)
Q Consensus 119 ~a~~~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~ 159 (482)
.+.++|..|..+++ ..+..|..-...+...|++++|.++|+
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 55555555555543 234444555555555555555555554
No 446
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=53.28 E-value=2.2e+02 Score=27.56 Aligned_cols=82 Identities=9% Similarity=0.018 Sum_probs=63.5
Q ss_pred hhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-hCChhhHHHHHHH
Q 038748 82 GPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVV-ADRVKDAITTFDV 160 (482)
Q Consensus 82 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~a~~~~~~ 160 (482)
..-..+|+.... .+..|+..|...+..+-+.+.+.+.-.+|..|....+.++..|-.-..-... ..+++.|..+|..
T Consensus 88 ~rIv~lyr~at~--rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflr 165 (568)
T KOG2396|consen 88 NRIVFLYRRATN--RFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLR 165 (568)
T ss_pred HHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHH
Confidence 344556666655 5667999999999999999999999999999999988777666554444333 3459999999998
Q ss_pred HHhcC
Q 038748 161 MEQYG 165 (482)
Q Consensus 161 ~~~~~ 165 (482)
-.+.+
T Consensus 166 gLR~n 170 (568)
T KOG2396|consen 166 GLRFN 170 (568)
T ss_pred HhhcC
Confidence 88764
No 447
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=53.27 E-value=90 Score=27.89 Aligned_cols=57 Identities=9% Similarity=0.155 Sum_probs=36.3
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHh
Q 038748 333 MKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYM 394 (482)
Q Consensus 333 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 394 (482)
.++++.|.+.++.|.-..|..+.-.+.+.=.+..+..+|+.+.... .-|..|+..|+
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~-----~rfd~Ll~iCc 319 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDP-----QRFDFLLYICC 319 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcCh-----hhhHHHHHHHH
Confidence 4566777777777777777666666666666777777777776532 22444554444
No 448
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=52.85 E-value=90 Score=22.96 Aligned_cols=27 Identities=19% Similarity=0.089 Sum_probs=19.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHH
Q 038748 420 TGNLLVAGLCDMHMLPEAVKYAKGMAE 446 (482)
Q Consensus 420 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 446 (482)
-|..|+..|...|..++|++++.+..+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 566677777777777777777776655
No 449
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=51.85 E-value=1.5e+02 Score=26.59 Aligned_cols=24 Identities=21% Similarity=0.088 Sum_probs=13.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhH
Q 038748 208 AILLEGWEKERDVANAKKTFGEMV 231 (482)
Q Consensus 208 ~~l~~~~~~~~~~~~a~~~~~~~~ 231 (482)
...+......|++..|++++.+..
T Consensus 131 ~~~l~~ll~~~dy~~Al~li~~~~ 154 (291)
T PF10475_consen 131 QSRLQELLEEGDYPGALDLIEECQ 154 (291)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Confidence 334444555666666666655554
No 450
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=51.33 E-value=2.1e+02 Score=26.84 Aligned_cols=17 Identities=12% Similarity=0.155 Sum_probs=9.1
Q ss_pred HhcCChhHHHHHHHHhh
Q 038748 288 LTGQNLRGAEFIWGAMV 304 (482)
Q Consensus 288 ~~~g~~~~a~~~~~~~~ 304 (482)
.+.+++..|.++|..+.
T Consensus 142 ~n~~~y~aA~~~l~~l~ 158 (379)
T PF09670_consen 142 FNRYDYGAAARILEELL 158 (379)
T ss_pred HhcCCHHHHHHHHHHHH
Confidence 34555555555555554
No 451
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=50.70 E-value=88 Score=22.17 Aligned_cols=21 Identities=5% Similarity=-0.001 Sum_probs=11.5
Q ss_pred HHHHhhCChhhHHHHHHHHHh
Q 038748 143 SSYVVADRVKDAITTFDVMEQ 163 (482)
Q Consensus 143 ~~~~~~~~~~~a~~~~~~~~~ 163 (482)
......|++++|...+++.++
T Consensus 49 ~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 49 ELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHhCCHHHHHHHHHHHHH
Confidence 334445666666666655543
No 452
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=50.36 E-value=1.5e+02 Score=30.30 Aligned_cols=182 Identities=12% Similarity=0.041 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHH----------HHHHHHHHHHh
Q 038748 259 YETVNSLKRMMERGCNPG---MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTH----------MYNMMISLYCY 325 (482)
Q Consensus 259 ~~a~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----------~~~~li~~~~~ 325 (482)
++--..+.+|+++--.|+ ..+...++-.|....+++...++.+.+. . -||.. .|..-+.---+
T Consensus 180 ~~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk-~---iP~t~~vve~~nv~f~YaFALNRRNr 255 (1226)
T KOG4279|consen 180 DQLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLK-R---IPDTLKVVETHNVRFHYAFALNRRNR 255 (1226)
T ss_pred HHHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHH-h---CcchhhhhccCceEEEeeehhcccCC
Confidence 344455666666543333 3445555666666677777777777663 2 23211 12222222224
Q ss_pred cCCHHHHHHHHHHHHHCC--CCCCHhhH-----HHH--HHHHHhcCCHHHHHHHHHHHHhCCCccChhh---HHHHHHHH
Q 038748 326 SNETGAAMKLLDEMVYNG--AFPDIQTY-----NIL--FEFLVKGRKLWEASGLFNEMVKNENVLNHEN---CRAAVRVY 393 (482)
Q Consensus 326 ~~~~~~a~~~~~~m~~~g--~~p~~~~~-----~~l--l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~---~~~li~~~ 393 (482)
-|+-++|+.+.-.|.+.. +.||.... .-+ -..|...+..+.|.++|++.-+ +.|+... +..|+.+-
T Consensus 256 ~GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aa 333 (1226)
T KOG4279|consen 256 PGDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAA 333 (1226)
T ss_pred CccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHh
Confidence 467777777776666542 44554332 111 1234445667778888887766 3444332 33333322
Q ss_pred hcCCChHHHHHH------HHHHH-HcCCCCChhhH---HHHHHHHHhcCChhHHHHHHHHHHHcC
Q 038748 394 MDSDDPYVAIKF------WKYMI-ENHCSDLSETG---NLLVAGLCDMHMLPEAVKYAKGMAEKG 448 (482)
Q Consensus 394 ~~~~~~~~a~~~------~~~m~-~~~~~p~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~~ 448 (482)
.+ .++...++ +..+. ++|.--....| ...+.+-.-++++.+|.+.-+.|.+..
T Consensus 334 G~--~Fens~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk 396 (1226)
T KOG4279|consen 334 GE--HFENSLELQQIGMKLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLK 396 (1226)
T ss_pred hh--hccchHHHHHHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccC
Confidence 11 12222221 11111 12211111111 122333445678888888888886654
No 453
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=50.18 E-value=2e+02 Score=26.09 Aligned_cols=145 Identities=15% Similarity=0.128 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHHCCC----CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHH
Q 038748 329 TGAAMKLLDEMVYNGA----FPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIK 404 (482)
Q Consensus 329 ~~~a~~~~~~m~~~g~----~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 404 (482)
.+.|.+.|+.....+. ..+......++....+.|+.+.-..+++..... .+...-..++.+.+...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccCCHHHHHH
Confidence 5678888888887522 345556666777777788866655666655543 356667889999999999999999
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCCh--hHHHHHHHH----HHHcCCCCCHHHHHHHHHH----HHHhccHHHHHH
Q 038748 405 FWKYMIENHCSDLSETGNLLVAGLCDMHML--PEAVKYAKG----MAEKGIQVTPFALSKLKQI----LIKARKEAVYEE 474 (482)
Q Consensus 405 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~--~~A~~~~~~----m~~~~~~~~~~~~~~l~~~----~~~~g~~~~a~~ 474 (482)
+++.....+..++... ..++.++...+.. +.+.+++.+ +.+. +..+......++.. ++...+.+++.+
T Consensus 223 ~l~~~l~~~~v~~~d~-~~~~~~~~~~~~~~~~~~~~~~~~n~~~i~~~-~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~ 300 (324)
T PF11838_consen 223 LLDLLLSNDKVRSQDI-RYVLAGLASSNPVGRDLAWEFFKENWDAIIKK-FGTNSSALSRVIKSFAGNFSTEEQLDELEE 300 (324)
T ss_dssp HHHHHHCTSTS-TTTH-HHHHHHHH-CSTTCHHHHHHHHHHCHHHHHCH-C-TTSHCCHHHHHCCCTT--SHHHHHHHHH
T ss_pred HHHHHcCCcccccHHH-HHHHHHHhcCChhhHHHHHHHHHHHHHHHHHH-hcCCChHHHHHHHHHhccCCCHHHHHHHHH
Confidence 9999887542233344 3444455433433 666666543 3222 22222233444442 445556667776
Q ss_pred HHHH
Q 038748 475 LLKK 478 (482)
Q Consensus 475 ~~~~ 478 (482)
+++.
T Consensus 301 f~~~ 304 (324)
T PF11838_consen 301 FFED 304 (324)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 6643
No 454
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=49.63 E-value=1.3e+02 Score=24.70 Aligned_cols=22 Identities=5% Similarity=0.178 Sum_probs=16.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 038748 355 FEFLVKGRKLWEASGLFNEMVK 376 (482)
Q Consensus 355 l~~~~~~g~~~~a~~~~~~~~~ 376 (482)
+..|.+.|.+++|.+++++..+
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc
Confidence 3457777888888888877766
No 455
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=49.41 E-value=1.2e+02 Score=28.23 Aligned_cols=70 Identities=11% Similarity=0.196 Sum_probs=38.8
Q ss_pred CCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhc--------------CCCCHHHHHHHHHHHHhhCChhhHHHHHHHH
Q 038748 96 NDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKE--------------NVLSLATFASVFSSYVVADRVKDAITTFDVM 161 (482)
Q Consensus 96 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--------------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 161 (482)
+..-+......++... .|+...+...++.+... +.........++++. ..|+..++..+++.+
T Consensus 184 g~~i~~~al~~l~~~~--~gdlr~~~~~lekl~~y~~~~it~~~v~~~~~~~~~~~if~l~~ai-~~~~~~~a~~~~~~l 260 (367)
T PRK14970 184 GIKFEDDALHIIAQKA--DGALRDALSIFDRVVTFCGKNITRQAVTENLNILDYDTYINVTDLI-LENKIPELLLAFNEI 260 (367)
T ss_pred CCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCCHHHHHHHHHHH-HcCCHHHHHHHHHHH
Confidence 4445555555555432 35555565555554311 111222233345544 347899999999998
Q ss_pred HhcCCCC
Q 038748 162 EQYGCKH 168 (482)
Q Consensus 162 ~~~~~~~ 168 (482)
...|..|
T Consensus 261 ~~~~~~~ 267 (367)
T PRK14970 261 LRKGFDG 267 (367)
T ss_pred HHcCCCH
Confidence 8877655
No 456
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=49.37 E-value=1.5e+02 Score=28.70 Aligned_cols=28 Identities=7% Similarity=0.058 Sum_probs=19.9
Q ss_pred HHHHHHHhhCChhhHHHHHHHHHhcCCCC
Q 038748 140 SVFSSYVVADRVKDAITTFDVMEQYGCKH 168 (482)
Q Consensus 140 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 168 (482)
.++. ....++++.|..+++.+...|..|
T Consensus 253 ~L~~-ai~~~d~~~al~~l~~L~~~g~~~ 280 (451)
T PRK06305 253 TLDE-AITTQNYAQALEPVTDAMNSGVAP 280 (451)
T ss_pred HHHH-HHHcCCHHHHHHHHHHHHHcCcCH
Confidence 4454 345588888999888888877554
No 457
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=49.23 E-value=1.7e+02 Score=24.98 Aligned_cols=99 Identities=14% Similarity=-0.014 Sum_probs=53.8
Q ss_pred CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcc---ChhhHH--HHHHHHhcCCChHHHHHHHHHHHHcCCCCCh
Q 038748 344 AFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVL---NHENCR--AAVRVYMDSDDPYVAIKFWKYMIENHCSDLS 418 (482)
Q Consensus 344 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~--~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 418 (482)
+.++..-+|.|+--|.-...+.+|...|..- .|+.| |..++. .-|......|++++|++....+.-.-+.-|.
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e--~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~ 99 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAKE--SGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNR 99 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhccc--cCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccch
Confidence 3445555666665555555555555555442 33333 333333 3456667788888888887776533233333
Q ss_pred hhHHHHHH----HHHhcCChhHHHHHHHHH
Q 038748 419 ETGNLLVA----GLCDMHMLPEAVKYAKGM 444 (482)
Q Consensus 419 ~~~~~li~----~~~~~g~~~~A~~~~~~m 444 (482)
..+..|.. -+.+.|..++|+++++.=
T Consensus 100 ~l~F~Lq~q~lIEliR~~~~eeal~F~q~~ 129 (228)
T KOG2659|consen 100 ELFFHLQQLHLIELIREGKTEEALEFAQTK 129 (228)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 23322221 134667777777777653
No 458
>PHA02875 ankyrin repeat protein; Provisional
Probab=49.01 E-value=2.4e+02 Score=26.73 Aligned_cols=211 Identities=14% Similarity=0.067 Sum_probs=107.6
Q ss_pred HHHHHHhcCChHhHHHHHHHhhCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCCh-hhHHHHHHHHH
Q 038748 176 LLSAICRDGKTIDAWQFLRVVDGRIKPDNDT--YAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNV-PAYDSYLITLL 252 (482)
Q Consensus 176 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~-~~~~~l~~~~~ 252 (482)
.+...+..|+.+-+..+++ .|..++... ..+.+...+..|+.+-+.-+++ .|..|+.. ....+.+...+
T Consensus 5 ~L~~A~~~g~~~iv~~Ll~---~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~-----~ga~~~~~~~~~~t~L~~A~ 76 (413)
T PHA02875 5 ALCDAILFGELDIARRLLD---IGINPNFEIYDGISPIKLAMKFRDSEAIKLLMK-----HGAIPDVKYPDIESELHDAV 76 (413)
T ss_pred HHHHHHHhCCHHHHHHHHH---CCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHh-----CCCCccccCCCcccHHHHHH
Confidence 3455667788877766664 355555432 3455666677888765443332 25544211 11223355555
Q ss_pred ccCCChHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHH---HHHHHHHHHHhc
Q 038748 253 KGCDGIYETVNSLKRMMERGCNPGMT---FFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTH---MYNMMISLYCYS 326 (482)
Q Consensus 253 ~~~~~~~~a~~~~~~m~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~---~~~~li~~~~~~ 326 (482)
.. |+.+.+..+++ .|...+.. .-.+.+...+..|+.+-+..+++ .|..|+.. -.+ .+...+..
T Consensus 77 ~~-g~~~~v~~Ll~----~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~-----~gad~~~~~~~g~t-pLh~A~~~ 145 (413)
T PHA02875 77 EE-GDVKAVEELLD----LGKFADDVFYKDGMTPLHLATILKKLDIMKLLIA-----RGADPDIPNTDKFS-PLHLAVMM 145 (413)
T ss_pred HC-CCHHHHHHHHH----cCCcccccccCCCCCHHHHHHHhCCHHHHHHHHh-----CCCCCCCCCCCCCC-HHHHHHHc
Confidence 66 88776555543 34222111 11234455566777755544443 34444321 222 33444566
Q ss_pred CCHHHHHHHHHHHHHCCCCCC---HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhh---HHHHHHHHhcCCChH
Q 038748 327 NETGAAMKLLDEMVYNGAFPD---IQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHEN---CRAAVRVYMDSDDPY 400 (482)
Q Consensus 327 ~~~~~a~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~---~~~li~~~~~~~~~~ 400 (482)
|+.+-+ +.+.+.|..++ ....+.+..+ +..|+.+ +++.+.+.|..++... ..+.+...+..|+.
T Consensus 146 ~~~~~v----~~Ll~~g~~~~~~d~~g~TpL~~A-~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~- 215 (413)
T PHA02875 146 GDIKGI----ELLIDHKACLDIEDCCGCTPLIIA-MAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKI- 215 (413)
T ss_pred CCHHHH----HHHHhcCCCCCCCCCCCCCHHHHH-HHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCH-
Confidence 776554 44445555443 2333444433 4556654 4455666776665432 12444444455655
Q ss_pred HHHHHHHHHHHcCCCCCh
Q 038748 401 VAIKFWKYMIENHCSDLS 418 (482)
Q Consensus 401 ~a~~~~~~m~~~~~~p~~ 418 (482)
++.+.+.+.|..++.
T Consensus 216 ---~iv~~Ll~~gad~n~ 230 (413)
T PHA02875 216 ---DIVRLFIKRGADCNI 230 (413)
T ss_pred ---HHHHHHHHCCcCcch
Confidence 455566677876663
No 459
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=48.81 E-value=1.3e+02 Score=24.32 Aligned_cols=60 Identities=12% Similarity=0.056 Sum_probs=33.5
Q ss_pred HHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCh
Q 038748 127 MKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKT 186 (482)
Q Consensus 127 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 186 (482)
+...|.-.+..-..++..+...+..-.|.++++.+.+.+...+..|.---|..+.+.|-+
T Consensus 17 L~~~GlR~T~qR~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 17 CAQRNVRLTPQRLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHHcCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 344454333444555555555555666677777776666555555544455555555544
No 460
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=48.40 E-value=2.3e+02 Score=28.63 Aligned_cols=81 Identities=12% Similarity=0.101 Sum_probs=44.0
Q ss_pred hHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcC--CCC------------HHHHHHHHHHHHhhCC
Q 038748 85 VKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKEN--VLS------------LATFASVFSSYVVADR 150 (482)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~------------~~~~~~li~~~~~~~~ 150 (482)
...+.+...+.+...+......++... .|+...+...++.+...+ ..+ ......+++++ ..|+
T Consensus 185 ~~~L~~~a~~egl~i~~eal~~La~~s--~Gdlr~al~~LekL~~y~~~~It~e~V~~ll~~s~~~~vf~Lidal-~~~d 261 (585)
T PRK14950 185 AAHLRKIAAAEGINLEPGALEAIARAA--TGSMRDAENLLQQLATTYGGEISLSQVQSLLGISGDEEVKALAEAL-LAKD 261 (585)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHhcCCCHHHHHHHHHHH-HcCC
Confidence 333443333335555555555555433 356666666666554311 111 12233445544 3488
Q ss_pred hhhHHHHHHHHHhcCCCC
Q 038748 151 VKDAITTFDVMEQYGCKH 168 (482)
Q Consensus 151 ~~~a~~~~~~~~~~~~~~ 168 (482)
...+.++++.+.+.|..+
T Consensus 262 ~~~al~~l~~L~~~g~~~ 279 (585)
T PRK14950 262 LKAALRTLNAVAADGADL 279 (585)
T ss_pred HHHHHHHHHHHHHcCCCH
Confidence 888999998888877643
No 461
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=48.27 E-value=2.3e+02 Score=26.69 Aligned_cols=57 Identities=19% Similarity=0.144 Sum_probs=39.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHh--hHHHHHHHHHh--cCCHHHHHHHHHHHHhC
Q 038748 320 ISLYCYSNETGAAMKLLDEMVYNGAFPDIQ--TYNILFEFLVK--GRKLWEASGLFNEMVKN 377 (482)
Q Consensus 320 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~ll~~~~~--~g~~~~a~~~~~~~~~~ 377 (482)
+..+.+.+++..|.++|+.+... +.++.. .+..+..+|.. .-++++|.+.++.....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 33455788999999999998886 554444 44555555543 56778888888887664
No 462
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=47.44 E-value=84 Score=21.47 Aligned_cols=30 Identities=17% Similarity=0.256 Sum_probs=20.5
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHhcCCCCHH
Q 038748 107 VVDLLGKNCLFDAMWDAIKSMKKENVLSLA 136 (482)
Q Consensus 107 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 136 (482)
+++.+.+..--++|+++++.|.++|-.+..
T Consensus 37 V~D~L~rCdT~EEAlEii~yleKrGEi~~E 66 (98)
T COG4003 37 VIDFLRRCDTEEEALEIINYLEKRGEITPE 66 (98)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhCCCCHH
Confidence 445556666677788888888887765544
No 463
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=46.89 E-value=2.4e+02 Score=28.24 Aligned_cols=30 Identities=17% Similarity=0.234 Sum_probs=19.0
Q ss_pred HHHHHHHHHhhCChhhHHHHHHHHHhcCCCC
Q 038748 138 FASVFSSYVVADRVKDAITTFDVMEQYGCKH 168 (482)
Q Consensus 138 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 168 (482)
...++.+. ..|+...|+.+++.+...|..|
T Consensus 249 if~LidaI-~~~D~~~al~~l~~Ll~~G~d~ 278 (563)
T PRK06647 249 LEKLASSI-LNEDAKELLCVLDSVFLSGVSV 278 (563)
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHHcCCCH
Confidence 33444433 3477888888888887776543
No 464
>PRK07914 hypothetical protein; Reviewed
Probab=46.83 E-value=1.6e+02 Score=26.75 Aligned_cols=22 Identities=27% Similarity=0.205 Sum_probs=17.7
Q ss_pred hhCChhhHHHHHHHHHhcCCCC
Q 038748 147 VADRVKDAITTFDVMEQYGCKH 168 (482)
Q Consensus 147 ~~~~~~~a~~~~~~~~~~~~~~ 168 (482)
-.|+..+|..+++.+...|..|
T Consensus 207 ~~g~~~~A~~~l~~L~~~ge~p 228 (320)
T PRK07914 207 VAGDVAGAAEALRWAMMRGEPH 228 (320)
T ss_pred HCCCHHHHHHHHHHHHHCCCch
Confidence 3488899999999888887655
No 465
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=46.60 E-value=4e+02 Score=28.63 Aligned_cols=98 Identities=10% Similarity=0.108 Sum_probs=62.0
Q ss_pred HHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHH-------HHHHHHHhcCC---hHhHHHHHHHhhCCCCCCHHHHHH
Q 038748 140 SVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALN-------SLLSAICRDGK---TIDAWQFLRVVDGRIKPDNDTYAI 209 (482)
Q Consensus 140 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------~ll~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~ 209 (482)
++=+++...+.++.|+..|+++..+ ++--..-|. +++.-....|+ +++|+.-|+.+..+... +--|.-
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 557 (932)
T PRK13184 480 AVPDAFLAEKLYDQALIFYRRIRES-FPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGVGA-PLEYLG 557 (932)
T ss_pred cCcHHHHhhHHHHHHHHHHHHHhhc-CCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCC-chHHHh
Confidence 3446777888999999999998764 111122232 23333344444 67777778777654222 223444
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHhcCCCCC
Q 038748 210 LLEGWEKERDVANAKKTFGEMVIEVGWDPD 239 (482)
Q Consensus 210 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~ 239 (482)
-.-+|.+.|++++-.+.+.-..++....|.
T Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (932)
T PRK13184 558 KALVYQRLGEYNEEIKSLLLALKRYSQHPE 587 (932)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhcCCCCc
Confidence 445688889999888888877777676664
No 466
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=46.56 E-value=26 Score=26.76 Aligned_cols=29 Identities=21% Similarity=0.338 Sum_probs=17.0
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 038748 327 NETGAAMKLLDEMVYNGAFPDIQTYNILFEF 357 (482)
Q Consensus 327 ~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 357 (482)
|.-..|..+|.+|.+.|-.||. |+.|+..
T Consensus 109 gsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 4445566666667666666653 5555543
No 467
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=46.39 E-value=1e+02 Score=29.02 Aligned_cols=101 Identities=14% Similarity=0.095 Sum_probs=0.0
Q ss_pred CCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHH----------------HHHHHHHHHhcCCHHHHHHHHHHhH
Q 038748 168 HDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDT----------------YAILLEGWEKERDVANAKKTFGEMV 231 (482)
Q Consensus 168 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----------------~~~l~~~~~~~~~~~~a~~~~~~~~ 231 (482)
|+......+++.+-..-+-....+.++..+.|..|+..+ ...|++.++-.||+..|+++++.+.
T Consensus 70 ~~~W~~~~VLnvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~id 149 (404)
T PF10255_consen 70 PDVWNVYSVLNVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLENID 149 (404)
T ss_pred cCcccHHHHHHHHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhccC
Q ss_pred Hh-----cCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHH
Q 038748 232 IE-----VGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMM 269 (482)
Q Consensus 232 ~~-----~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~ 269 (482)
-. ..+.+-.+.++..+.-+|.-. +++.+|.+.|....
T Consensus 150 l~~~~l~~~V~~~~is~~YyvGFaylMl-rRY~DAir~f~~iL 191 (404)
T PF10255_consen 150 LNKKGLYTKVPACHISTYYYVGFAYLML-RRYADAIRTFSQIL 191 (404)
T ss_pred cccchhhccCcchheehHHHHHHHHHHH-HHHHHHHHHHHHHH
No 468
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=46.28 E-value=1.5e+02 Score=24.02 Aligned_cols=62 Identities=10% Similarity=0.011 Sum_probs=39.4
Q ss_pred HHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhH
Q 038748 374 MVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPE 436 (482)
Q Consensus 374 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 436 (482)
+.+.|+..+..- ..++..+...++.-.|.++++.+.+.+...+..|-..-+..+...|-+.+
T Consensus 17 L~~~GlR~T~qR-~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~~ 78 (169)
T PRK11639 17 CAQRNVRLTPQR-LEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHK 78 (169)
T ss_pred HHHcCCCCCHHH-HHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEEE
Confidence 445566655443 35555555566677888888888877766666555555666677665543
No 469
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=46.18 E-value=1.1e+02 Score=22.12 Aligned_cols=78 Identities=13% Similarity=0.046 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 038748 364 LWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKG 443 (482)
Q Consensus 364 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 443 (482)
.++|..+-+.+...+-. ....-.+-+..+...|++++|..+.+.+ ..||...|-.|-. .+.|..+++..-+.+
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~r 93 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNR 93 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHH
Confidence 45555555555443321 2222223334456667777776665544 3566666554432 355666666666666
Q ss_pred HHHcC
Q 038748 444 MAEKG 448 (482)
Q Consensus 444 m~~~~ 448 (482)
|-..|
T Consensus 94 la~sg 98 (115)
T TIGR02508 94 LAASG 98 (115)
T ss_pred HHhCC
Confidence 65555
No 470
>PRK09462 fur ferric uptake regulator; Provisional
Probab=45.34 E-value=1.5e+02 Score=23.27 Aligned_cols=60 Identities=12% Similarity=0.039 Sum_probs=29.7
Q ss_pred HHhCCCccChhhHHHHHHHHhcC-CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh
Q 038748 374 MVKNENVLNHENCRAAVRVYMDS-DDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHML 434 (482)
Q Consensus 374 ~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 434 (482)
+.+.|..++..- ..++..+... +..-.|.++++.+.+.+...+..|-..-+..+...|-.
T Consensus 8 l~~~glr~T~qR-~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 8 LKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 444455544332 2344444433 34566666666666655444444444444445555443
No 471
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=45.31 E-value=1.2e+02 Score=22.26 Aligned_cols=81 Identities=7% Similarity=-0.028 Sum_probs=49.9
Q ss_pred cCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHH
Q 038748 78 YSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITT 157 (482)
Q Consensus 78 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 157 (482)
....++|..+.+|+....+ -...+--.-+..+.+.|+++.| +..-.....||...|.+| +-.+.|--+++...
T Consensus 19 ~HcH~EA~tIa~wL~~~~~--~~E~v~lIr~~sLmNrG~Yq~A---Ll~~~~~~~pdL~p~~AL--~a~klGL~~~~e~~ 91 (116)
T PF09477_consen 19 HHCHQEANTIADWLEQEGE--MEEVVALIRLSSLMNRGDYQEA---LLLPQCHCYPDLEPWAAL--CAWKLGLASALESR 91 (116)
T ss_dssp TT-HHHHHHHHHHHHHTTT--THHHHHHHHHHHHHHTT-HHHH---HHHHTTS--GGGHHHHHH--HHHHCT-HHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHHhhHHHHHH---HHhcccCCCccHHHHHHH--HHHhhccHHHHHHH
Confidence 3456899999999988422 2233333445677889999999 333333334676666554 34677888888888
Q ss_pred HHHHHhcC
Q 038748 158 FDVMEQYG 165 (482)
Q Consensus 158 ~~~~~~~~ 165 (482)
+.++..+|
T Consensus 92 l~rla~~g 99 (116)
T PF09477_consen 92 LTRLASSG 99 (116)
T ss_dssp HHHHCT-S
T ss_pred HHHHHhCC
Confidence 88887765
No 472
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=45.29 E-value=2.5e+02 Score=25.91 Aligned_cols=53 Identities=13% Similarity=0.030 Sum_probs=24.2
Q ss_pred hcCCHHHHHHHHHHHHhCCCccChhhHHHH----HHHHhcCCChHHHHHHHHHHHHc
Q 038748 360 KGRKLWEASGLFNEMVKNENVLNHENCRAA----VRVYMDSDDPYVAIKFWKYMIEN 412 (482)
Q Consensus 360 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l----i~~~~~~~~~~~a~~~~~~m~~~ 412 (482)
+.++..-+...+..+-+.++.--..+|.++ |.-.++.+..++|.+..-+|.+.
T Consensus 289 kDnnt~l~k~av~sl~k~nI~rltktF~sLsL~dIA~~vQLa~~qevek~Ilqmie~ 345 (422)
T KOG2582|consen 289 KDNNTGLAKQAVSSLYKKNIQRLTKTFLSLSLSDIASRVQLASAQEVEKYILQMIED 345 (422)
T ss_pred hcCcHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHhcc
Confidence 344444444444444444333333344433 22223445555666655555544
No 473
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=44.90 E-value=2.8e+02 Score=27.58 Aligned_cols=28 Identities=7% Similarity=0.113 Sum_probs=17.7
Q ss_pred HHHHHHHHHhhCChhhHHHHHHHHHhcCC
Q 038748 138 FASVFSSYVVADRVKDAITTFDVMEQYGC 166 (482)
Q Consensus 138 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 166 (482)
...++.++.+ ++...++.+.+.+...|.
T Consensus 249 v~~ll~Al~~-~d~~~~l~~~~~l~~~~~ 276 (546)
T PRK14957 249 VYSIINAIID-NDPKAILPAIKNLALTES 276 (546)
T ss_pred HHHHHHHHHc-CCHHHHHHHHHHHHHhCC
Confidence 3345555543 677777777777776553
No 474
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=44.78 E-value=1.9e+02 Score=24.46 Aligned_cols=96 Identities=17% Similarity=0.058 Sum_probs=52.1
Q ss_pred HHHhcCCHHHHHHHHHHHHhC----CCccC--hhhHHHHHHHHhcCCChH-------HHHHHHHHHHHcCCCC----Chh
Q 038748 357 FLVKGRKLWEASGLFNEMVKN----ENVLN--HENCRAAVRVYMDSDDPY-------VAIKFWKYMIENHCSD----LSE 419 (482)
Q Consensus 357 ~~~~~g~~~~a~~~~~~~~~~----~~~~~--~~~~~~li~~~~~~~~~~-------~a~~~~~~m~~~~~~p----~~~ 419 (482)
-+.....+++|.+.|.-..-. +..+. ...+.-+.-.|-..|+-+ .|.+.|.+..+..-.| +..
T Consensus 86 ~~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~ 165 (214)
T PF09986_consen 86 DFSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEA 165 (214)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHH
Confidence 355566778888777665432 22333 223334455566666633 3445555544432222 112
Q ss_pred h-HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 038748 420 T-GNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVT 452 (482)
Q Consensus 420 ~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 452 (482)
+ .-.+.....+.|+.++|.+.|.++...+-...
T Consensus 166 ~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 166 TLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 2 22333445677888888888888887764433
No 475
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=44.59 E-value=23 Score=31.96 Aligned_cols=92 Identities=14% Similarity=0.022 Sum_probs=59.3
Q ss_pred hcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHH
Q 038748 182 RDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYET 261 (482)
Q Consensus 182 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a 261 (482)
..|.++.|++.|.......++....|..-.+++.+.++...|++=++... .+.||+..-|-.--.+.... |.++++
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~---ein~Dsa~~ykfrg~A~rll-g~~e~a 201 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAI---EINPDSAKGYKFRGYAERLL-GNWEEA 201 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhh---ccCcccccccchhhHHHHHh-hchHHH
Confidence 45667777777766555556666677777777777777777777666554 45666554444333344444 777888
Q ss_pred HHHHHHHHHcCCCCCH
Q 038748 262 VNSLKRMMERGCNPGM 277 (482)
Q Consensus 262 ~~~~~~m~~~~~~~~~ 277 (482)
...|+...+.+..+..
T Consensus 202 a~dl~~a~kld~dE~~ 217 (377)
T KOG1308|consen 202 AHDLALACKLDYDEAN 217 (377)
T ss_pred HHHHHHHHhccccHHH
Confidence 7777777776655443
No 476
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=44.54 E-value=2.7e+02 Score=25.99 Aligned_cols=188 Identities=7% Similarity=-0.106 Sum_probs=0.0
Q ss_pred HHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHH
Q 038748 245 DSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYC 324 (482)
Q Consensus 245 ~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 324 (482)
.......... ++++....++.+ .+=-..++..+-..|...|+.+.|.+++++.+ -.=..++......+.
T Consensus 14 q~~F~~~v~~-~Dp~~l~~ll~~-----~PyHidtLlqls~v~~~~gd~~~A~~lleRAL-----f~~e~~~~~~F~~~~ 82 (360)
T PF04910_consen 14 QEQFYAAVQS-HDPNALINLLQK-----NPYHIDTLLQLSEVYRQQGDHAQANDLLERAL-----FAFERAFHPSFSPFR 82 (360)
T ss_pred HHHHHHHHHc-cCHHHHHHHHHH-----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHhhhhh
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHh-cCCChHHHH
Q 038748 325 YSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYM-DSDDPYVAI 403 (482)
Q Consensus 325 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~~~~~~a~ 403 (482)
.......+.--|..-..+ +=-.+.-.-|..+.+.|-+..|.++.+-+...+..-|+.....+|+.|+ +.++++--+
T Consensus 83 ~~~~~g~~rL~~~~~eNR---~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li 159 (360)
T PF04910_consen 83 SNLTSGNCRLDYRRPENR---QFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLI 159 (360)
T ss_pred cccccCccccCCccccch---HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHH
Q ss_pred HHHHHHHH------cCCCCChhhHHHHHHHHHhcCC--------------hhHHHHHHHHHHHc
Q 038748 404 KFWKYMIE------NHCSDLSETGNLLVAGLCDMHM--------------LPEAVKYAKGMAEK 447 (482)
Q Consensus 404 ~~~~~m~~------~~~~p~~~~~~~li~~~~~~g~--------------~~~A~~~~~~m~~~ 447 (482)
++++.... ...-|+ ..|+..+..+...+. .++|.+.+.+....
T Consensus 160 ~~~~~~~~~~~~~~~~~lPn-~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~ 222 (360)
T PF04910_consen 160 DFSESPLAKCYRNWLSLLPN-FAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILR 222 (360)
T ss_pred HHHHhHhhhhhhhhhhhCcc-HHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHH
No 477
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=43.50 E-value=2.6e+02 Score=27.39 Aligned_cols=71 Identities=11% Similarity=0.142 Sum_probs=40.8
Q ss_pred CCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcC--------------CCCHHHHHHHHHHHHhhCChhhHHHHHHHH
Q 038748 96 NDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKEN--------------VLSLATFASVFSSYVVADRVKDAITTFDVM 161 (482)
Q Consensus 96 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--------------~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 161 (482)
+...+......++.. ..|+...|...++.+...+ ..+......++.+. ..|+.+.|+.+++.+
T Consensus 195 gi~id~~al~~La~~--s~G~lr~al~~Ldkl~~~~~~~It~~~V~~~lg~~~~~~vf~Li~ai-~~~d~~~al~~l~~L 271 (486)
T PRK14953 195 KIEYEEKALDLLAQA--SEGGMRDAASLLDQASTYGEGKVTIKVVEEFLGIVSQESVRKFLNLL-LESDVDEAIKFLRTL 271 (486)
T ss_pred CCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHhCCCCHHHHHHHHHHH-HCCCHHHHHHHHHHH
Confidence 445555555555443 2356666666665543221 12222333445444 458899999999999
Q ss_pred HhcCCCCC
Q 038748 162 EQYGCKHD 169 (482)
Q Consensus 162 ~~~~~~~~ 169 (482)
...|..|.
T Consensus 272 ~~~g~~~~ 279 (486)
T PRK14953 272 EEKGYNLN 279 (486)
T ss_pred HHcCCCHH
Confidence 88776543
No 478
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=43.49 E-value=2.4e+02 Score=25.13 Aligned_cols=26 Identities=4% Similarity=-0.003 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHhhCChhhHHHHHHH
Q 038748 135 LATFASVFSSYVVADRVKDAITTFDV 160 (482)
Q Consensus 135 ~~~~~~li~~~~~~~~~~~a~~~~~~ 160 (482)
..++..+...|++-++.+.+.++..+
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~ 140 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRR 140 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 44455555555555555555554443
No 479
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=42.58 E-value=2.7e+02 Score=25.53 Aligned_cols=63 Identities=13% Similarity=-0.085 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 038748 400 YVAIKFWKYMIENHCSDLS----ETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILI 464 (482)
Q Consensus 400 ~~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~ 464 (482)
++...++..+++. .|+. ..|-+++......|.+++.+.+|++.+..|..|-...-..++..+.
T Consensus 120 eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 120 EEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 3444455544442 2333 3455666666666777777777777777777666666666665554
No 480
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=42.22 E-value=2.6e+02 Score=25.25 Aligned_cols=40 Identities=13% Similarity=0.199 Sum_probs=29.7
Q ss_pred HHHHhhhcCCCCCHHHHHHHHHhhcCCchhHhHHhhhhhc
Q 038748 54 VEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAY 93 (482)
Q Consensus 54 ~~~~l~~~~~~~~~~~~~~ll~~~~~~~~~a~~~~~~~~~ 93 (482)
+.......|+.++...+..++..+.|+...|..+++.+..
T Consensus 197 L~~Ia~~E~v~~d~~al~~I~~~S~GdLR~Ait~Lqsls~ 236 (346)
T KOG0989|consen 197 LEKIASKEGVDIDDDALKLIAKISDGDLRRAITTLQSLSL 236 (346)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHhhc
Confidence 3444446788888888888888888888888888876554
No 481
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=41.91 E-value=76 Score=23.47 Aligned_cols=46 Identities=15% Similarity=0.086 Sum_probs=26.2
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh
Q 038748 389 AVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHML 434 (482)
Q Consensus 389 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 434 (482)
++..+...+..-.|.++++.+.+.+...+..|-...++.+...|-.
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli 51 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLV 51 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCE
Confidence 4455555555666777777776665545555544455555555544
No 482
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=41.73 E-value=3.1e+02 Score=29.18 Aligned_cols=32 Identities=9% Similarity=0.061 Sum_probs=24.0
Q ss_pred hcCCCCCHHHHHHHHHhhcCCchhHhHHhhhh
Q 038748 60 KTLIRVSQETVEQVLKFSYSHPGPAVKFFRWS 91 (482)
Q Consensus 60 ~~~~~~~~~~~~~ll~~~~~~~~~a~~~~~~~ 91 (482)
..++..+...+..+.+.+.|++..|+.+++..
T Consensus 193 ~EgI~~edeAL~lIA~~S~Gd~R~ALnLLdQa 224 (944)
T PRK14949 193 QEQLPFEAEALTLLAKAANGSMRDALSLTDQA 224 (944)
T ss_pred HcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 35777777777777777888888888887643
No 483
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=41.70 E-value=3e+02 Score=25.79 Aligned_cols=52 Identities=13% Similarity=-0.067 Sum_probs=24.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHhhH----HHHHHHHHh--cCCHHHHHHHHHH
Q 038748 322 LYCYSNETGAAMKLLDEMVYNGAFPDIQTY----NILFEFLVK--GRKLWEASGLFNE 373 (482)
Q Consensus 322 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~----~~ll~~~~~--~g~~~~a~~~~~~ 373 (482)
.+.+.+++..|.++|+++.+..+.+....+ ..+..+|.. .-++++|.+.++.
T Consensus 139 ~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 139 RAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 344556666666666666655443333322 222222221 3345555555553
No 484
>PRK14700 recombination factor protein RarA; Provisional
Probab=41.65 E-value=2.6e+02 Score=25.09 Aligned_cols=107 Identities=12% Similarity=0.033 Sum_probs=64.6
Q ss_pred CCCCCHHHHHHHHHhhcCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcC-C---CCHHH
Q 038748 62 LIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKEN-V---LSLAT 137 (482)
Q Consensus 62 ~~~~~~~~~~~ll~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~---~~~~~ 137 (482)
.+.++...+..+...+.||...|+..++.+..... ..+. . .--.+.+++..+.. . -+...
T Consensus 62 ~~~i~~~al~~ia~~a~GDaR~aLN~LE~a~~~~~-~~~~-~--------------~it~~~~~~~~~~~~~~yDk~gd~ 125 (300)
T PRK14700 62 KFKIDDGLYNAMHNYNEGDCRKILNLLERMFLIST-RGDE-I--------------YLNKELFDQAVGETSRDFHREGKE 125 (300)
T ss_pred CCCcCHHHHHHHHHhcCCHHHHHHHHHHHHHhhcc-ccCC-C--------------ccCHHHHHHHHhHHHhcccCCcch
Confidence 46789999999999999999999999997443100 0000 0 01122222222211 1 12233
Q ss_pred HHHHHHHHHhh---CChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcC
Q 038748 138 FASVFSSYVVA---DRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDG 184 (482)
Q Consensus 138 ~~~li~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 184 (482)
+.-+|+++.+. .+.+.|+-++-.|.+.|-.|.-..-..++.+.-.-|
T Consensus 126 HYd~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIG 175 (300)
T PRK14700 126 FYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIG 175 (300)
T ss_pred hHHHHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 44456666544 789999999999999987666555555555544444
No 485
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=41.33 E-value=3.2e+02 Score=25.95 Aligned_cols=185 Identities=12% Similarity=0.064 Sum_probs=0.0
Q ss_pred hhHhHHhhhhhcCCCCCCCHhh-HHHHHHHHhhCCCcH-----HHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHH
Q 038748 82 GPAVKFFRWSAYQLNDKHSPYA-WNLVVDLLGKNCLFD-----AMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAI 155 (482)
Q Consensus 82 ~~a~~~~~~~~~~~~~~~~~~~-~~~li~~~~~~~~~~-----~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 155 (482)
+++.++.+.+...........+ ..++|..||+.++.+ .-+.+++-+....+|-...||.+ .
T Consensus 72 ~DC~~~~d~l~n~ee~~v~vv~dlES~iTfYCK~Rn~~Y~~d~gWi~lL~pl~~L~lprsd~fN~F-------------~ 138 (669)
T KOG3636|consen 72 NDCRKLADGLKNKEEDKVPVVSDLESFITFYCKKRNMDYIKDIGWITLLEPLLLLNLPRSDEFNVF-------------F 138 (669)
T ss_pred HHHHHHHhhcCCchhhccchhHhhhhHhhhhhhccCCcccccccHHHHHHHHHHhcCCcchhhhhh-------------H
Q ss_pred HHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhc
Q 038748 156 TTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDG-RIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEV 234 (482)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 234 (482)
.+-...+-.+..|....|. +.+.+....+.+-. ..+.. .+.||..+.|.+...++..-..+-...+|+-..+
T Consensus 139 ai~~kYIPkdcrpkg~~Fh-~FRLLlqYHdPelc----~~LdtkkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~q-- 211 (669)
T KOG3636|consen 139 AITTKYIPKDCRPKGQIFH-LFRLLLQYHDPELC----NHLDTKKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQ-- 211 (669)
T ss_pred hhhhcccCCCCCCCCccch-HHHHHHHhcCHHHh----hhhhccccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--
Q ss_pred CCCCCChhhHHHHHHHHHccC--------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 038748 235 GWDPDNVPAYDSYLITLLKGC--------DGIYETVNSLKRMMERGCNPGMTFFKLAFEECL 288 (482)
Q Consensus 235 ~~~p~~~~~~~~l~~~~~~~~--------~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 288 (482)
+.|....|...+..++... ..-++++++++.|-..--.-|...+-.+...|+
T Consensus 212 --qaDPF~vffLaliiLiNake~ILq~~sdsKEe~ikfLenmp~~L~~eDvpDffsLAqyY~ 271 (669)
T KOG3636|consen 212 --QADPFLVFFLALIILINAKEEILQVKSDSKEEAIKFLENMPAQLSVEDVPDFFSLAQYYS 271 (669)
T ss_pred --cCCceehHHHHHHHhcccHHHHhhhccccHHHHHHHHHcCchhcccccchhHHHHHHHHh
No 486
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.20 E-value=4.7e+02 Score=27.82 Aligned_cols=115 Identities=6% Similarity=0.048 Sum_probs=66.9
Q ss_pred hhHHHHHHHHhhCCCcHHHHHHHHHHHhcC----CCCHHHHHHHHHHHHhhCCh--hhHHHHHHHHHhcCCCCCHhhHH-
Q 038748 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKEN----VLSLATFASVFSSYVVADRV--KDAITTFDVMEQYGCKHDVFALN- 174 (482)
Q Consensus 102 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~li~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~- 174 (482)
.-|..|+..|...|..++|+++|.+..... ..-...+..+++.+-+.+.. +-+.+.-++..+.........+.
T Consensus 505 ~~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~ 584 (877)
T KOG2063|consen 505 KKYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTS 584 (877)
T ss_pred ccHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeec
Confidence 457888888888888888888888887743 11223344456655555544 45555444444332111111111
Q ss_pred -----------HHHHHHHhcCChHhHHHHHHHhhC-CCCCCHHHHHHHHHHHHh
Q 038748 175 -----------SLLSAICRDGKTIDAWQFLRVVDG-RIKPDNDTYAILLEGWEK 216 (482)
Q Consensus 175 -----------~ll~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~ 216 (482)
..+-.|......+-+..+++.+.. .-.++....+.++..|++
T Consensus 585 ~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 585 EDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred cChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 123345666777777788877543 344566666666666654
No 487
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=40.88 E-value=26 Score=31.56 Aligned_cols=86 Identities=8% Similarity=-0.086 Sum_probs=37.5
Q ss_pred CCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHH
Q 038748 79 SHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTF 158 (482)
Q Consensus 79 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 158 (482)
|.++.|++.|..... -.+++...|..--+++.+.+++..|++=++.....+..+..-|-.--.+-.-.|+|.+|...|
T Consensus 128 G~~~~ai~~~t~ai~--lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 128 GEFDTAIELFTSAIE--LNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred cchhhhhcccccccc--cCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHH
Confidence 444444444444333 333444444444444555555555544444444444333333332223333334555555544
Q ss_pred HHHHhcCC
Q 038748 159 DVMEQYGC 166 (482)
Q Consensus 159 ~~~~~~~~ 166 (482)
....+.++
T Consensus 206 ~~a~kld~ 213 (377)
T KOG1308|consen 206 ALACKLDY 213 (377)
T ss_pred HHHHhccc
Confidence 44444433
No 488
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=40.53 E-value=1.7e+02 Score=25.50 Aligned_cols=57 Identities=5% Similarity=-0.112 Sum_probs=30.7
Q ss_pred HHHHHHHccCCChHHHHHHHHHHHH----cCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 038748 246 SYLITLLKGCDGIYETVNSLKRMME----RGC-NPGMTFFKLAFEECLTGQNLRGAEFIWGAM 303 (482)
Q Consensus 246 ~l~~~~~~~~~~~~~a~~~~~~m~~----~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 303 (482)
.+...+... |++++|.++|+.+.. .|. .+...+...+..++...|+.+....+--++
T Consensus 183 ~~A~ey~~~-g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 183 EMAEEYFRL-GDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHC-CCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 344555555 666666666665532 232 233444555566666667766666554443
No 489
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=40.50 E-value=4.6e+02 Score=27.50 Aligned_cols=45 Identities=16% Similarity=0.124 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 038748 258 IYETVNSLKRMM-ERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMV 304 (482)
Q Consensus 258 ~~~a~~~~~~m~-~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 304 (482)
.++..+.++... +.|+..+......+.. ...|++..++.++++..
T Consensus 180 ~eeIv~~L~~Il~~EgI~id~eAL~lIA~--~A~GsmRdALsLLdQAi 225 (830)
T PRK07003 180 AGHIVSHLERILGEERIAFEPQALRLLAR--AAQGSMRDALSLTDQAI 225 (830)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHH
Confidence 344445555443 3455555544433332 23567777777666553
No 490
>COG1466 HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair]
Probab=39.95 E-value=3e+02 Score=25.28 Aligned_cols=21 Identities=19% Similarity=0.181 Sum_probs=14.4
Q ss_pred hhCChhhHHHHHHHHHhcCCC
Q 038748 147 VADRVKDAITTFDVMEQYGCK 167 (482)
Q Consensus 147 ~~~~~~~a~~~~~~~~~~~~~ 167 (482)
..|+...|..+++.+...|..
T Consensus 220 l~g~~~~a~~~l~~L~~~ge~ 240 (334)
T COG1466 220 LKGDVKKALRLLRDLLLEGEE 240 (334)
T ss_pred HCCCHHHHHHHHHHHHHcCCc
Confidence 347777777777777776654
No 491
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=39.79 E-value=71 Score=23.90 Aligned_cols=43 Identities=14% Similarity=0.081 Sum_probs=20.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Q 038748 425 VAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKAR 467 (482)
Q Consensus 425 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 467 (482)
+..+...+..-.|.++++.+.+.+...+..|.-.-++.+.+.|
T Consensus 14 l~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 14 LELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 3344444445555555555555555555544444444444444
No 492
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=39.59 E-value=97 Score=20.02 Aligned_cols=12 Identities=17% Similarity=-0.078 Sum_probs=4.1
Q ss_pred CChhHHHHHHHH
Q 038748 432 HMLPEAVKYAKG 443 (482)
Q Consensus 432 g~~~~A~~~~~~ 443 (482)
|++=+|-+++++
T Consensus 13 g~f~EaHEvlE~ 24 (62)
T PF03745_consen 13 GDFFEAHEVLEE 24 (62)
T ss_dssp T-HHHHHHHHHH
T ss_pred CCHHHhHHHHHH
Confidence 333333333333
No 493
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=39.51 E-value=1.5e+02 Score=21.69 Aligned_cols=18 Identities=17% Similarity=0.001 Sum_probs=7.4
Q ss_pred HHHHhcCCHHHHHHHHHH
Q 038748 356 EFLVKGRKLWEASGLFNE 373 (482)
Q Consensus 356 ~~~~~~g~~~~a~~~~~~ 373 (482)
..|...|+.++|...+++
T Consensus 10 ~ey~~~~d~~ea~~~l~e 27 (113)
T PF02847_consen 10 MEYFSSGDVDEAVECLKE 27 (113)
T ss_dssp HHHHHHT-HHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHH
Confidence 334444444444444444
No 494
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=39.46 E-value=1.9e+02 Score=30.94 Aligned_cols=75 Identities=9% Similarity=-0.031 Sum_probs=53.0
Q ss_pred hcCCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcc
Q 038748 394 MDSDDPYVAIKFWKYMIENHCSDLS-ETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARK 468 (482)
Q Consensus 394 ~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 468 (482)
.....+.+++.+|..|...|+.... ..|......|.+.+.+.+|..+|+.-++..-.|-...-..+.....+.++
T Consensus 89 ~~~e~~~d~~d~f~~m~~kgIg~~lalfYe~~a~~lE~k~~~keA~~v~q~Giq~~aeP~~rL~~~~~~F~~r~~r 164 (974)
T KOG1166|consen 89 ELREELQDAEDFFSYLENKGIGTTLALFYEAYAKHLERKEYFKEAKEVFQLGIQNKAEPLERLLRQYSNFQQRLMR 164 (974)
T ss_pred HHHHHHhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Confidence 3556688888888888888876665 45556667777888888888888888777777766655555444444443
No 495
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=39.25 E-value=3.7e+02 Score=26.09 Aligned_cols=108 Identities=8% Similarity=-0.148 Sum_probs=64.2
Q ss_pred HhcCCHHHHHHHHHHHH---hCCCccC-----hhhHHHHHHHHhcCCChHHHHHHHHHHH-------HcCCCCCh-----
Q 038748 359 VKGRKLWEASGLFNEMV---KNENVLN-----HENCRAAVRVYMDSDDPYVAIKFWKYMI-------ENHCSDLS----- 418 (482)
Q Consensus 359 ~~~g~~~~a~~~~~~~~---~~~~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~-------~~~~~p~~----- 418 (482)
.-.|++.+|.+++-..- +.|...+ ...+|.+...+.+.|.+.-+..+|.... ..|++|..
T Consensus 251 Y~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls 330 (696)
T KOG2471|consen 251 YAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLS 330 (696)
T ss_pred HHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehh
Confidence 34677777777664321 1121111 1223555555666666666666666554 23554432
Q ss_pred ------hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcc
Q 038748 419 ------ETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARK 468 (482)
Q Consensus 419 ------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 468 (482)
.+||.= -.|...|++-.|.+.|.+.... +.-++..|..+.++|..+.+
T Consensus 331 ~nks~eilYNcG-~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCima~~ 384 (696)
T KOG2471|consen 331 QNKSMEILYNCG-LLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIMALQ 384 (696)
T ss_pred cccchhhHHhhh-HHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHHhh
Confidence 233332 2466789999999999887654 45688899999998876543
No 496
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=39.14 E-value=2.6e+02 Score=24.20 Aligned_cols=58 Identities=7% Similarity=0.023 Sum_probs=29.4
Q ss_pred HHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHH
Q 038748 283 AFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCY-SNETGAAMKLLDEMVY 341 (482)
Q Consensus 283 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~a~~~~~~m~~ 341 (482)
++..+-..|+++++.+.++++. ..+...+..-.+.|-.+|-. .|....+++++..+.+
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~-~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLI-EMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ 65 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHH-HTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHH-ccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence 4455556666666666666665 33445555555555555532 2334444555544443
No 497
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=39.03 E-value=91 Score=23.06 Aligned_cols=45 Identities=13% Similarity=0.136 Sum_probs=24.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCH
Q 038748 320 ISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKL 364 (482)
Q Consensus 320 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 364 (482)
+..+...+..-.|.++++.+.+.+...+..|....+..+...|-+
T Consensus 7 l~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli 51 (116)
T cd07153 7 LEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLV 51 (116)
T ss_pred HHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCE
Confidence 334444444455666666666655555555555555555555543
No 498
>PF10155 DUF2363: Uncharacterized conserved protein (DUF2363); InterPro: IPR019312 This entry represents a region of 120 amino acids in proteins conserved from plants to humans. Their function is not known.
Probab=38.46 E-value=1.8e+02 Score=22.20 Aligned_cols=61 Identities=10% Similarity=0.083 Sum_probs=38.5
Q ss_pred CCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 038748 79 SHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYV 146 (482)
Q Consensus 79 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 146 (482)
.+|.-|.+++...... + .....++.+....-.-.+.++..++.....+........+.-|.
T Consensus 3 nNp~IA~~~l~~l~~s----~---~~~~yld~lv~~~~sl~s~EvVn~L~~~~~~p~efl~~yI~~cI 63 (126)
T PF10155_consen 3 NNPNIAIEILVKLINS----P---NFKEYLDVLVSMDMSLHSMEVVNRLTTSFSLPQEFLHMYISNCI 63 (126)
T ss_pred CcHHHHHHHHHHHcCC----c---hHHHHHHHHHcCCCchhHHHHHHHHHcCCCCcHHHHHHHHHHHH
Confidence 4566677777655441 1 26777777777777777888888877766544444555554443
No 499
>PRK10941 hypothetical protein; Provisional
Probab=38.02 E-value=2.9e+02 Score=24.49 Aligned_cols=61 Identities=13% Similarity=0.150 Sum_probs=41.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHc
Q 038748 207 YAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMER 271 (482)
Q Consensus 207 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~ 271 (482)
.+.+-.+|.+.++++.|+++.+.+. .+.|++..-+.--...+.+. |.+..|..=++...+.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll---~l~P~dp~e~RDRGll~~qL-~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALL---QFDPEDPYEIRDRGLIYAQL-DCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHh
Confidence 4555667777888888888887776 45777666565555666666 7777777766666543
No 500
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=37.97 E-value=2.3e+02 Score=28.50 Aligned_cols=91 Identities=9% Similarity=0.110 Sum_probs=62.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHhhHHHHHHHHHhcCCHHH------HHHHHHHHHhCCCccChhhHHHH
Q 038748 318 MMISLYCYSNETGAAMKLLDEMVYN--GAFPDIQTYNILFEFLVKGRKLWE------ASGLFNEMVKNENVLNHENCRAA 389 (482)
Q Consensus 318 ~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~g~~~~------a~~~~~~~~~~~~~~~~~~~~~l 389 (482)
+|+.+|..+|++-.+.++++.+... |-+.-...||..++...+.|.++- +.++++.. .+.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a---~ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQA---RLNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHh---hcCCcchHHHHH
Confidence 7999999999999999999998875 333334568888999999997653 33333333 345577888888
Q ss_pred HHHHhcCCChHHHHHHHHHHHH
Q 038748 390 VRVYMDSDDPYVAIKFWKYMIE 411 (482)
Q Consensus 390 i~~~~~~~~~~~a~~~~~~m~~ 411 (482)
+++-..--.-.-..-++.+++.
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHHH
Confidence 8776653333334444444443
Done!