Query 038748
Match_columns 482
No_of_seqs 604 out of 3204
Neff 11.5
Searched_HMMs 29240
Date Mon Mar 25 04:07:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038748.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038748hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1.8E-35 6.2E-40 293.5 41.7 402 65-481 115-578 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1.6E-35 5.6E-40 293.9 37.6 402 65-481 82-544 (597)
3 4g26_A Pentatricopeptide repea 100.0 5.4E-33 1.9E-37 264.7 23.6 206 261-467 9-224 (501)
4 4g26_A Pentatricopeptide repea 100.0 5E-32 1.7E-36 258.0 23.8 186 243-430 28-222 (501)
5 1w3b_A UDP-N-acetylglucosamine 100.0 1.2E-27 4.3E-32 224.0 45.9 378 76-467 10-387 (388)
6 1w3b_A UDP-N-acetylglucosamine 100.0 1.8E-27 6.3E-32 222.8 43.6 362 108-481 6-367 (388)
7 2y4t_A DNAJ homolog subfamily 99.9 3E-23 1E-27 198.2 40.3 362 96-471 21-443 (450)
8 2gw1_A Mitochondrial precursor 99.9 4.2E-23 1.4E-27 200.7 39.4 393 76-480 17-476 (514)
9 2y4t_A DNAJ homolog subfamily 99.9 3.6E-22 1.2E-26 190.7 39.5 330 119-462 10-372 (450)
10 2gw1_A Mitochondrial precursor 99.9 2.6E-22 8.8E-27 195.1 38.8 372 65-448 37-479 (514)
11 3fp2_A TPR repeat-containing p 99.9 4.1E-21 1.4E-25 187.8 40.9 388 76-481 36-490 (537)
12 3fp2_A TPR repeat-containing p 99.9 7.6E-20 2.6E-24 178.7 39.4 358 76-449 70-493 (537)
13 3ieg_A DNAJ homolog subfamily 99.9 2.8E-19 9.7E-24 165.0 38.0 335 100-468 2-355 (359)
14 3ieg_A DNAJ homolog subfamily 99.9 6.5E-19 2.2E-23 162.6 40.3 312 135-481 3-334 (359)
15 3hym_B Cell division cycle pro 99.9 1.3E-18 4.6E-23 158.5 34.2 290 96-393 17-314 (330)
16 3hym_B Cell division cycle pro 99.9 1.4E-18 4.7E-23 158.4 30.6 285 134-463 21-314 (330)
17 1fch_A Peroxisomal targeting s 99.8 3E-19 1E-23 165.6 24.0 265 171-442 65-354 (368)
18 2xm6_A Protein corresponding t 99.8 3.7E-15 1.3E-19 143.5 48.2 340 78-450 56-435 (490)
19 1fch_A Peroxisomal targeting s 99.8 6E-18 2.1E-22 156.8 27.1 303 79-408 39-355 (368)
20 2ooe_A Cleavage stimulation fa 99.8 7.4E-16 2.5E-20 150.0 42.5 406 66-481 12-491 (530)
21 2xm6_A Protein corresponding t 99.8 1.7E-15 5.9E-20 145.9 44.5 364 82-481 24-431 (490)
22 4eqf_A PEX5-related protein; a 99.8 1.7E-18 5.8E-23 160.4 22.4 266 203-478 64-352 (365)
23 4eqf_A PEX5-related protein; a 99.8 6.8E-18 2.3E-22 156.3 23.9 265 173-443 68-352 (365)
24 3spa_A Mtrpol, DNA-directed RN 99.8 5.8E-20 2E-24 180.2 9.8 118 276-393 126-246 (1134)
25 1b89_A Protein (clathrin heavy 99.8 1.2E-17 4.2E-22 151.9 23.4 289 69-405 8-304 (449)
26 3mkr_A Coatomer subunit epsilo 99.8 5.1E-17 1.8E-21 144.6 26.2 251 145-411 9-263 (291)
27 3spa_A Mtrpol, DNA-directed RN 99.8 1.7E-19 5.9E-24 176.9 10.6 136 312-452 126-265 (1134)
28 3cv0_A Peroxisome targeting si 99.8 3.4E-17 1.2E-21 149.0 25.2 279 100-408 20-311 (327)
29 2ooe_A Cleavage stimulation fa 99.8 1.7E-14 6E-19 140.3 43.8 371 65-447 44-492 (530)
30 3cv0_A Peroxisome targeting si 99.8 9.7E-17 3.3E-21 145.9 25.3 276 137-443 23-311 (327)
31 4g1t_A Interferon-induced prot 99.8 7.9E-15 2.7E-19 140.7 38.5 365 98-481 48-458 (472)
32 1b89_A Protein (clathrin heavy 99.7 2E-17 6.9E-22 150.5 15.6 284 113-441 15-305 (449)
33 3mkr_A Coatomer subunit epsilo 99.7 1.4E-15 4.9E-20 135.2 26.6 275 177-475 6-287 (291)
34 1xi4_A Clathrin heavy chain; a 99.7 8.5E-14 2.9E-18 141.4 38.1 324 63-445 981-1307(1630)
35 1xi4_A Clathrin heavy chain; a 99.7 2.5E-13 8.6E-18 138.0 40.6 337 83-479 966-1306(1630)
36 4g1t_A Interferon-induced prot 99.7 1.2E-13 4.1E-18 132.4 35.6 356 73-448 59-460 (472)
37 3u4t_A TPR repeat-containing p 99.7 4.8E-14 1.7E-18 124.4 25.5 237 101-342 3-250 (272)
38 3uq3_A Heat shock protein STI1 99.7 4.3E-14 1.5E-18 123.6 23.8 226 204-447 5-236 (258)
39 2pl2_A Hypothetical conserved 99.6 3.1E-14 1.1E-18 121.0 20.7 197 276-479 4-211 (217)
40 3uq3_A Heat shock protein STI1 99.6 8.8E-14 3E-18 121.6 23.7 223 137-377 7-236 (258)
41 2pl2_A Hypothetical conserved 99.6 5.1E-14 1.7E-18 119.6 20.9 208 99-338 3-210 (217)
42 2ho1_A Type 4 fimbrial biogene 99.6 3.4E-13 1.2E-17 117.5 26.0 197 101-303 37-235 (252)
43 1ouv_A Conserved hypothetical 99.6 2.6E-12 8.9E-17 113.4 31.7 224 203-448 5-252 (273)
44 2vq2_A PILW, putative fimbrial 99.6 3E-13 1E-17 115.5 24.9 199 100-303 7-208 (225)
45 1ouv_A Conserved hypothetical 99.6 1.8E-12 6.1E-17 114.5 29.6 224 238-481 3-250 (273)
46 3u4t_A TPR repeat-containing p 99.6 4.1E-13 1.4E-17 118.4 25.3 235 206-448 5-251 (272)
47 2h6f_A Protein farnesyltransfe 99.6 8.9E-13 3.1E-17 121.2 27.9 234 100-341 96-347 (382)
48 2ho1_A Type 4 fimbrial biogene 99.6 8E-13 2.7E-17 115.1 26.0 202 135-342 37-238 (252)
49 2q7f_A YRRB protein; TPR, prot 99.6 1.3E-13 4.5E-18 119.3 20.7 200 99-304 21-220 (243)
50 1xnf_A Lipoprotein NLPI; TPR, 99.6 4.4E-14 1.5E-18 124.9 17.7 93 206-303 45-137 (275)
51 1xnf_A Lipoprotein NLPI; TPR, 99.6 3.7E-14 1.3E-18 125.4 16.9 118 113-231 17-138 (275)
52 2vq2_A PILW, putative fimbrial 99.6 8.7E-13 3E-17 112.6 24.5 200 204-410 8-209 (225)
53 2h6f_A Protein farnesyltransfe 99.6 1.3E-12 4.3E-17 120.2 27.0 217 170-396 97-322 (382)
54 3e4b_A ALGK; tetratricopeptide 99.6 8.3E-13 2.8E-17 125.3 26.6 372 76-481 14-420 (452)
55 2q7f_A YRRB protein; TPR, prot 99.6 4.2E-13 1.4E-17 116.1 20.9 123 176-303 29-151 (243)
56 3sf4_A G-protein-signaling mod 99.6 3E-13 1E-17 126.7 21.2 301 168-469 7-363 (406)
57 3sf4_A G-protein-signaling mod 99.6 2.1E-13 7.1E-18 127.9 19.7 171 98-269 6-214 (406)
58 4a1s_A PINS, partner of inscut 99.6 4.5E-13 1.6E-17 125.9 21.5 131 350-480 225-370 (411)
59 3ro2_A PINS homolog, G-protein 99.5 3.3E-13 1.1E-17 122.8 19.5 267 211-481 12-331 (338)
60 4a1s_A PINS, partner of inscut 99.5 2.3E-13 7.8E-18 128.0 18.8 277 102-411 49-371 (411)
61 3e4b_A ALGK; tetratricopeptide 99.5 7.3E-13 2.5E-17 125.6 22.3 343 107-480 9-385 (452)
62 2ond_A Cleavage stimulation fa 99.5 1.3E-11 4.5E-16 110.9 29.2 218 118-341 33-269 (308)
63 3ulq_A Response regulator aspa 99.5 2.1E-12 7.1E-17 120.2 24.1 228 249-480 111-366 (383)
64 3ro2_A PINS homolog, G-protein 99.5 4.3E-13 1.5E-17 122.1 18.0 276 103-411 7-331 (338)
65 4e6h_A MRNA 3'-END-processing 99.5 3E-10 1E-14 111.5 38.9 418 54-481 55-569 (679)
66 3ulq_A Response regulator aspa 99.5 7.1E-12 2.4E-16 116.5 25.4 233 210-446 109-367 (383)
67 2ond_A Cleavage stimulation fa 99.5 1.6E-11 5.3E-16 110.4 26.5 217 82-306 33-270 (308)
68 3vtx_A MAMA; tetratricopeptide 99.5 5.6E-12 1.9E-16 103.9 21.5 167 100-271 4-170 (184)
69 4e6h_A MRNA 3'-END-processing 99.5 9.1E-10 3.1E-14 108.1 37.8 391 80-481 47-532 (679)
70 4abn_A Tetratricopeptide repea 99.5 4E-12 1.4E-16 121.3 20.3 212 81-301 84-316 (474)
71 3nf1_A KLC 1, kinesin light ch 99.5 7E-13 2.4E-17 119.3 13.7 174 202-376 25-223 (311)
72 3nf1_A KLC 1, kinesin light ch 99.4 9.7E-13 3.3E-17 118.4 13.3 172 134-341 26-223 (311)
73 3q15_A PSP28, response regulat 99.4 1.2E-10 4E-15 108.1 27.3 225 251-480 111-363 (378)
74 3vtx_A MAMA; tetratricopeptide 99.4 3E-11 1E-15 99.6 20.4 165 134-304 4-168 (184)
75 4abn_A Tetratricopeptide repea 99.4 8.8E-12 3E-16 119.0 19.4 212 186-406 84-315 (474)
76 3q15_A PSP28, response regulat 99.4 4.3E-10 1.5E-14 104.2 28.1 232 210-446 107-364 (378)
77 3as5_A MAMA; tetratricopeptide 99.4 7.8E-11 2.7E-15 96.9 19.1 163 103-270 10-172 (186)
78 1hz4_A MALT regulatory protein 99.4 8.6E-10 2.9E-14 102.0 28.0 202 208-410 97-320 (373)
79 1hz4_A MALT regulatory protein 99.3 6.8E-10 2.3E-14 102.7 26.7 292 177-469 21-352 (373)
80 4gyw_A UDP-N-acetylglucosamine 99.3 7.2E-11 2.5E-15 117.3 19.8 166 100-270 8-173 (723)
81 3as5_A MAMA; tetratricopeptide 99.3 6.1E-10 2.1E-14 91.4 21.3 161 173-340 11-171 (186)
82 3edt_B KLC 2, kinesin light ch 99.3 1.1E-10 3.6E-15 103.3 16.0 205 277-481 43-280 (283)
83 4i17_A Hypothetical protein; T 99.3 7.3E-10 2.5E-14 94.7 20.0 193 99-304 5-207 (228)
84 3edt_B KLC 2, kinesin light ch 99.3 1E-10 3.6E-15 103.3 14.8 137 204-341 43-197 (283)
85 4gyw_A UDP-N-acetylglucosamine 99.2 9.9E-10 3.4E-14 109.2 21.0 165 134-304 8-172 (723)
86 4i17_A Hypothetical protein; T 99.2 2.7E-09 9.3E-14 91.1 20.9 194 275-481 5-208 (228)
87 2fo7_A Synthetic consensus TPR 99.1 3.1E-09 1.1E-13 81.9 16.8 128 103-231 3-130 (136)
88 1qqe_A Vesicular transport pro 99.1 6.5E-09 2.2E-13 92.4 20.2 130 314-445 118-267 (292)
89 1qqe_A Vesicular transport pro 99.1 5.7E-09 1.9E-13 92.8 17.9 206 257-479 32-266 (292)
90 2pzi_A Probable serine/threoni 99.1 1.7E-09 5.9E-14 107.9 15.8 153 112-270 402-562 (681)
91 3qky_A Outer membrane assembly 99.1 1.1E-08 3.9E-13 89.2 18.6 100 99-198 13-125 (261)
92 3qky_A Outer membrane assembly 99.1 8.9E-09 3.1E-13 89.9 17.9 216 236-473 10-252 (261)
93 2fo7_A Synthetic consensus TPR 99.1 1.6E-08 5.3E-13 77.9 17.2 129 137-270 3-131 (136)
94 3dra_A Protein farnesyltransfe 99.0 8.7E-07 3E-11 78.1 29.3 221 115-341 47-286 (306)
95 3urz_A Uncharacterized protein 99.0 1.6E-08 5.6E-13 84.8 17.6 123 176-304 60-184 (208)
96 3mv2_B Coatomer subunit epsilo 99.0 1.2E-07 4E-12 82.9 23.0 67 202-270 98-164 (310)
97 3mv2_B Coatomer subunit epsilo 99.0 3E-07 1E-11 80.2 25.2 125 245-375 104-238 (310)
98 3qou_A Protein YBBN; thioredox 99.0 1.1E-08 3.9E-13 90.4 16.3 161 136-302 118-280 (287)
99 2pzi_A Probable serine/threoni 99.0 7.2E-09 2.4E-13 103.4 16.4 185 146-340 402-603 (681)
100 2yhc_A BAMD, UPF0169 lipoprote 99.0 3.8E-08 1.3E-12 83.7 18.7 183 101-304 4-211 (225)
101 2r5s_A Uncharacterized protein 99.0 8.6E-09 2.9E-13 83.9 13.2 160 103-268 8-170 (176)
102 2uy1_A Cleavage stimulation fa 98.9 7.5E-06 2.6E-10 78.0 34.1 366 67-480 15-411 (493)
103 2vsy_A XCC0866; transferase, g 98.9 2.5E-08 8.4E-13 97.7 17.4 161 78-244 2-165 (568)
104 4ga2_A E3 SUMO-protein ligase 98.9 4E-09 1.4E-13 83.3 9.7 132 113-248 9-141 (150)
105 3urz_A Uncharacterized protein 98.9 3.6E-08 1.2E-12 82.7 16.0 165 106-278 9-191 (208)
106 2yhc_A BAMD, UPF0169 lipoprote 98.9 1.6E-07 5.4E-12 79.8 19.6 64 135-198 4-69 (225)
107 2r5s_A Uncharacterized protein 98.9 2.9E-08 1E-12 80.7 13.9 160 138-303 9-170 (176)
108 3qou_A Protein YBBN; thioredox 98.9 1.2E-07 3.9E-12 84.0 18.7 160 102-267 118-280 (287)
109 2ifu_A Gamma-SNAP; membrane fu 98.9 7.1E-08 2.4E-12 86.3 17.5 26 385-410 157-182 (307)
110 2uy1_A Cleavage stimulation fa 98.9 4.7E-06 1.6E-10 79.4 30.7 362 41-445 20-411 (493)
111 3rjv_A Putative SEL1 repeat pr 98.9 2.7E-07 9.4E-12 77.5 19.6 177 260-449 4-199 (212)
112 3dra_A Protein farnesyltransfe 98.9 2.3E-06 8E-11 75.4 25.4 220 78-304 46-285 (306)
113 4ga2_A E3 SUMO-protein ligase 98.9 2.5E-08 8.6E-13 78.6 11.5 140 77-219 9-149 (150)
114 3q7a_A Farnesyltransferase alp 98.9 8.7E-06 3E-10 72.6 28.9 221 116-342 69-331 (349)
115 2vsy_A XCC0866; transferase, g 98.8 1.1E-07 3.7E-12 93.2 17.5 155 114-272 2-158 (568)
116 2ifu_A Gamma-SNAP; membrane fu 98.8 1.9E-07 6.6E-12 83.5 17.2 202 148-375 4-222 (307)
117 3u3w_A Transcriptional activat 98.8 9.3E-07 3.2E-11 78.4 21.1 163 283-445 81-264 (293)
118 3u3w_A Transcriptional activat 98.8 1.4E-06 4.7E-11 77.3 21.6 163 106-269 80-264 (293)
119 3rjv_A Putative SEL1 repeat pr 98.8 1.5E-06 5.1E-11 72.9 20.4 176 83-272 4-198 (212)
120 2qfc_A PLCR protein; TPR, HTH, 98.7 1.3E-06 4.5E-11 77.5 20.3 164 316-479 78-263 (293)
121 2qfc_A PLCR protein; TPR, HTH, 98.7 4.6E-06 1.6E-10 73.9 23.7 164 103-267 77-262 (293)
122 1hh8_A P67PHOX, NCF-2, neutrop 98.7 1.1E-06 3.6E-11 73.8 17.8 127 140-271 11-150 (213)
123 1hh8_A P67PHOX, NCF-2, neutrop 98.7 1.1E-06 3.6E-11 73.8 17.6 129 278-412 7-150 (213)
124 1a17_A Serine/threonine protei 98.7 6.4E-07 2.2E-11 71.7 15.5 129 102-231 14-144 (166)
125 4gco_A Protein STI-1; structur 98.7 5.6E-07 1.9E-11 68.3 13.9 108 136-247 14-121 (126)
126 1na0_A Designed protein CTPR3; 98.7 7.4E-07 2.5E-11 67.2 14.7 95 101-196 9-103 (125)
127 1a17_A Serine/threonine protei 98.7 1.5E-06 5.3E-11 69.4 17.2 126 351-479 16-143 (166)
128 2lni_A Stress-induced-phosphop 98.7 4.9E-07 1.7E-11 69.2 13.2 118 98-216 13-130 (133)
129 4gco_A Protein STI-1; structur 98.7 8.8E-07 3E-11 67.2 13.9 111 101-212 13-123 (126)
130 2vyi_A SGTA protein; chaperone 98.6 7.7E-07 2.6E-11 67.7 13.7 118 101-219 12-129 (131)
131 1p5q_A FKBP52, FK506-binding p 98.6 5.8E-08 2E-12 88.0 8.3 151 115-269 127-292 (336)
132 3gw4_A Uncharacterized protein 98.6 7E-07 2.4E-11 74.2 14.0 28 204-231 26-53 (203)
133 2c2l_A CHIP, carboxy terminus 98.6 6.4E-07 2.2E-11 78.9 14.2 98 134-232 3-100 (281)
134 3q7a_A Farnesyltransferase alp 98.6 2.1E-05 7.2E-10 70.1 23.8 221 77-304 66-329 (349)
135 3gw4_A Uncharacterized protein 98.6 4.6E-07 1.6E-11 75.3 12.5 158 288-447 3-176 (203)
136 3gyz_A Chaperone protein IPGC; 98.6 3.3E-06 1.1E-10 66.2 16.6 103 348-454 36-138 (151)
137 1na0_A Designed protein CTPR3; 98.6 2E-06 6.9E-11 64.7 14.7 112 135-250 9-120 (125)
138 2e2e_A Formate-dependent nitri 98.6 4.7E-07 1.6E-11 73.5 11.5 120 112-232 21-143 (177)
139 1p5q_A FKBP52, FK506-binding p 98.6 2.3E-07 8E-12 84.0 10.3 151 79-232 127-293 (336)
140 2fbn_A 70 kDa peptidylprolyl i 98.6 1.1E-07 3.7E-12 79.0 7.3 116 136-254 39-169 (198)
141 2c2l_A CHIP, carboxy terminus 98.6 1.5E-06 5E-11 76.5 14.8 95 279-376 6-100 (281)
142 4f3v_A ESX-1 secretion system 98.6 6.2E-06 2.1E-10 71.0 18.1 184 113-304 18-235 (282)
143 3gyz_A Chaperone protein IPGC; 98.5 9.6E-07 3.3E-11 69.2 11.8 94 137-231 38-131 (151)
144 2vgx_A Chaperone SYCD; alterna 98.5 7.1E-07 2.4E-11 70.0 11.1 96 135-231 21-116 (148)
145 4f3v_A ESX-1 secretion system 98.5 1.5E-06 5.1E-11 74.9 13.7 126 283-412 108-237 (282)
146 2lni_A Stress-induced-phosphop 98.5 2.4E-06 8.2E-11 65.3 13.4 115 134-252 15-129 (133)
147 1elw_A TPR1-domain of HOP; HOP 98.5 6.2E-06 2.1E-10 61.2 15.4 96 102-198 5-100 (118)
148 2vyi_A SGTA protein; chaperone 98.5 3.9E-06 1.3E-10 63.7 14.3 116 135-254 12-127 (131)
149 2vgx_A Chaperone SYCD; alterna 98.5 5.8E-07 2E-11 70.5 9.5 99 99-198 19-117 (148)
150 2e2e_A Formate-dependent nitri 98.5 2.5E-06 8.5E-11 69.2 12.7 118 78-198 23-143 (177)
151 3upv_A Heat shock protein STI1 98.4 4.6E-06 1.6E-10 63.2 12.8 92 103-195 6-97 (126)
152 2xcb_A PCRH, regulatory protei 98.4 1.7E-06 5.8E-11 67.3 10.1 96 101-197 18-113 (142)
153 2xcb_A PCRH, regulatory protei 98.4 2.2E-06 7.6E-11 66.6 10.7 99 133-232 16-114 (142)
154 3dss_A Geranylgeranyl transfer 98.4 0.00047 1.6E-08 61.2 26.4 242 188-462 48-318 (331)
155 1elw_A TPR1-domain of HOP; HOP 98.4 1.5E-05 5.1E-10 59.1 14.7 107 135-245 4-110 (118)
156 4gcn_A Protein STI-1; structur 98.4 6.2E-06 2.1E-10 62.6 12.3 105 350-457 10-120 (127)
157 2fbn_A 70 kDa peptidylprolyl i 98.4 1.3E-06 4.3E-11 72.5 9.0 151 78-231 17-184 (198)
158 3upv_A Heat shock protein STI1 98.4 1.1E-05 3.9E-10 60.9 13.6 96 136-232 5-100 (126)
159 2kck_A TPR repeat; tetratricop 98.3 7.8E-06 2.7E-10 60.1 11.9 96 101-197 6-104 (112)
160 3q49_B STIP1 homology and U bo 98.3 7.3E-06 2.5E-10 63.0 12.0 98 98-196 6-103 (137)
161 4b4t_Q 26S proteasome regulato 98.3 3.8E-05 1.3E-09 72.1 18.9 200 211-411 11-244 (434)
162 3sz7_A HSC70 cochaperone (SGT) 98.3 1.5E-05 5.1E-10 63.6 13.7 94 137-231 13-106 (164)
163 3sz7_A HSC70 cochaperone (SGT) 98.3 1.7E-05 5.8E-10 63.2 13.9 100 98-198 8-107 (164)
164 2dba_A Smooth muscle cell asso 98.3 2E-05 6.8E-10 61.3 14.0 96 100-196 27-125 (148)
165 1elr_A TPR2A-domain of HOP; HO 98.3 9.8E-06 3.3E-10 61.5 11.6 110 350-462 6-121 (131)
166 2dba_A Smooth muscle cell asso 98.3 3.6E-05 1.2E-09 59.8 15.1 109 133-246 26-138 (148)
167 4b4t_Q 26S proteasome regulato 98.3 5.8E-05 2E-09 70.9 19.0 97 243-340 137-243 (434)
168 1kt0_A FKBP51, 51 kDa FK506-bi 98.2 1.1E-06 3.7E-11 83.3 6.3 142 117-262 250-405 (457)
169 3dss_A Geranylgeranyl transfer 98.2 0.0017 5.8E-08 57.6 26.2 129 119-251 48-189 (331)
170 1elr_A TPR2A-domain of HOP; HO 98.2 1.2E-05 4.1E-10 61.0 11.1 96 102-197 5-106 (131)
171 3ro3_A PINS homolog, G-protein 98.2 1E-05 3.6E-10 64.0 11.1 96 385-480 51-156 (164)
172 4gcn_A Protein STI-1; structur 98.2 2.1E-05 7E-10 59.7 12.1 61 103-163 10-70 (127)
173 2xev_A YBGF; tetratricopeptide 98.2 3.7E-05 1.2E-09 58.2 13.7 89 107-196 8-102 (129)
174 2kck_A TPR repeat; tetratricop 98.2 1.7E-05 5.9E-10 58.1 11.3 99 134-233 5-106 (112)
175 3q49_B STIP1 homology and U bo 98.2 3.1E-05 1.1E-09 59.4 13.0 96 135-231 9-104 (137)
176 1hxi_A PEX5, peroxisome target 98.2 2.2E-05 7.5E-10 58.9 11.4 94 103-197 19-112 (121)
177 1kt0_A FKBP51, 51 kDa FK506-bi 98.2 5.6E-06 1.9E-10 78.3 9.7 149 80-231 249-413 (457)
178 1hxi_A PEX5, peroxisome target 98.2 4.1E-05 1.4E-09 57.4 12.6 89 389-479 23-111 (121)
179 3ro3_A PINS homolog, G-protein 98.1 2.1E-05 7.2E-10 62.1 11.2 132 315-446 11-157 (164)
180 2xev_A YBGF; tetratricopeptide 98.1 6.1E-05 2.1E-09 57.0 13.4 95 138-233 5-105 (129)
181 1wao_1 Serine/threonine protei 98.1 9.5E-06 3.3E-10 77.1 9.1 120 108-228 13-134 (477)
182 3n71_A Histone lysine methyltr 98.0 4.6E-05 1.6E-09 72.0 12.4 124 358-481 319-463 (490)
183 1ihg_A Cyclophilin 40; ppiase 98.0 4.7E-05 1.6E-09 69.7 12.0 91 169-263 272-362 (370)
184 1wao_1 Serine/threonine protei 98.0 2E-05 6.9E-10 74.8 9.9 121 141-266 12-134 (477)
185 3k9i_A BH0479 protein; putativ 98.0 1.4E-05 4.8E-10 59.6 6.8 85 148-232 3-89 (117)
186 2if4_A ATFKBP42; FKBP-like, al 98.0 1.9E-05 6.7E-10 71.3 8.9 93 136-230 180-290 (338)
187 1ihg_A Cyclophilin 40; ppiase 98.0 9.8E-05 3.3E-09 67.5 13.2 138 137-298 225-362 (370)
188 3rkv_A Putative peptidylprolyl 97.9 0.00012 4E-09 58.1 11.9 96 136-231 12-124 (162)
189 2if4_A ATFKBP42; FKBP-like, al 97.9 5.2E-05 1.8E-09 68.5 10.8 131 101-232 179-327 (338)
190 3k9i_A BH0479 protein; putativ 97.9 3E-05 1E-09 57.7 7.6 87 78-164 3-90 (117)
191 2l6j_A TPR repeat-containing p 97.9 2.1E-05 7.2E-10 57.7 6.3 93 100-194 3-102 (111)
192 3rkv_A Putative peptidylprolyl 97.9 7.8E-05 2.7E-09 59.2 9.9 97 101-198 11-125 (162)
193 1dce_A Protein (RAB geranylger 97.9 0.00092 3.1E-08 64.7 19.1 174 78-258 42-242 (567)
194 1dce_A Protein (RAB geranylger 97.9 0.0011 3.9E-08 64.1 19.4 176 113-293 41-242 (567)
195 2kat_A Uncharacterized protein 97.7 0.00028 9.7E-09 52.0 9.7 80 83-164 3-82 (115)
196 1klx_A Cysteine rich protein B 97.7 0.0013 4.5E-08 50.3 13.7 112 327-449 9-128 (138)
197 2hr2_A Hypothetical protein; a 97.7 0.00055 1.9E-08 53.1 11.3 28 137-164 13-40 (159)
198 2hr2_A Hypothetical protein; a 97.7 0.00035 1.2E-08 54.2 10.0 99 171-270 12-130 (159)
199 2kat_A Uncharacterized protein 97.7 0.00046 1.6E-08 50.9 10.4 80 366-447 3-82 (115)
200 1klx_A Cysteine rich protein B 97.6 0.0019 6.6E-08 49.4 13.9 111 291-413 9-127 (138)
201 1na3_A Designed protein CTPR2; 97.6 0.00085 2.9E-08 46.7 10.5 80 101-181 9-88 (91)
202 3n71_A Histone lysine methyltr 97.6 0.00026 8.9E-09 66.9 9.8 89 180-269 319-420 (490)
203 2l6j_A TPR repeat-containing p 97.6 8E-05 2.7E-09 54.5 5.0 23 140-162 9-31 (111)
204 3ma5_A Tetratricopeptide repea 97.5 0.00059 2E-08 48.8 8.4 67 98-164 4-70 (100)
205 1na3_A Designed protein CTPR2; 97.4 0.0012 4E-08 45.9 9.6 59 173-231 12-70 (91)
206 1zu2_A Mitochondrial import re 97.2 0.00042 1.4E-08 53.7 5.5 108 146-284 13-131 (158)
207 3ma5_A Tetratricopeptide repea 97.2 0.0015 5.3E-08 46.6 8.1 65 202-270 5-69 (100)
208 1zu2_A Mitochondrial import re 97.2 0.00099 3.4E-08 51.6 7.2 65 82-148 19-93 (158)
209 3mkq_A Coatomer beta'-subunit; 97.0 0.052 1.8E-06 55.3 20.3 75 139-230 633-707 (814)
210 3mkq_A Coatomer beta'-subunit; 97.0 0.022 7.4E-07 58.1 17.3 151 146-338 610-761 (814)
211 3ly7_A Transcriptional activat 96.8 0.027 9.3E-07 50.2 13.9 65 310-376 274-338 (372)
212 3qww_A SET and MYND domain-con 96.8 0.0056 1.9E-07 56.8 9.7 88 360-447 310-411 (433)
213 3qww_A SET and MYND domain-con 96.8 0.004 1.4E-07 57.7 8.7 87 325-411 310-410 (433)
214 2kc7_A BFR218_protein; tetratr 96.8 0.0055 1.9E-07 43.3 7.6 58 108-165 7-65 (99)
215 3qwp_A SET and MYND domain-con 96.7 0.0089 3E-07 55.5 10.7 91 355-445 294-398 (429)
216 3bee_A Putative YFRE protein; 96.7 0.016 5.6E-07 40.4 9.6 68 98-165 3-73 (93)
217 3qwp_A SET and MYND domain-con 96.6 0.012 4E-07 54.7 10.2 89 179-268 296-397 (429)
218 3ly7_A Transcriptional activat 96.5 0.075 2.6E-06 47.4 14.4 75 200-281 273-347 (372)
219 2kc7_A BFR218_protein; tetratr 96.3 0.027 9.2E-07 39.6 8.9 51 181-231 11-62 (99)
220 3u64_A Protein TP_0956; tetrat 96.2 0.066 2.2E-06 45.8 11.5 84 365-450 180-272 (301)
221 1pc2_A Mitochondria fission pr 96.1 0.052 1.8E-06 41.5 9.8 87 151-241 14-105 (152)
222 3bee_A Putative YFRE protein; 95.9 0.08 2.7E-06 36.8 9.4 66 202-271 4-72 (93)
223 3mkq_B Coatomer subunit alpha; 95.9 0.45 1.5E-05 37.4 15.9 45 147-197 17-61 (177)
224 1pc2_A Mitochondria fission pr 95.9 0.046 1.6E-06 41.8 8.4 84 363-448 13-101 (152)
225 2v5f_A Prolyl 4-hydroxylase su 95.5 0.11 3.7E-06 37.0 9.0 65 100-164 4-75 (104)
226 4b4t_P 26S proteasome regulato 95.4 1.5 5.1E-05 40.8 18.7 96 281-376 141-246 (445)
227 1nzn_A CGI-135 protein, fissio 95.4 0.34 1.2E-05 35.5 11.1 93 146-242 12-109 (126)
228 2v5f_A Prolyl 4-hydroxylase su 95.2 0.15 5.1E-06 36.3 9.0 62 135-196 5-72 (104)
229 1wy6_A Hypothetical protein ST 95.2 0.65 2.2E-05 34.3 15.1 66 348-414 91-156 (172)
230 4h7y_A Dual specificity protei 95.0 0.33 1.1E-05 36.7 10.1 55 396-451 73-127 (161)
231 4b4t_P 26S proteasome regulato 94.9 1.3 4.3E-05 41.3 16.5 190 217-411 29-246 (445)
232 1wy6_A Hypothetical protein ST 94.7 0.91 3.1E-05 33.6 15.1 67 277-345 91-157 (172)
233 3u64_A Protein TP_0956; tetrat 94.7 1.8 6.3E-05 37.0 17.3 18 121-138 52-69 (301)
234 3lvg_A Clathrin heavy chain 1; 94.4 0.0088 3E-07 54.8 0.6 217 99-333 81-324 (624)
235 3mkq_B Coatomer subunit alpha; 94.3 1.5 5.2E-05 34.4 16.8 45 112-161 16-60 (177)
236 3lvg_A Clathrin heavy chain 1; 94.3 3.1E-05 1.1E-09 70.3 -15.3 215 99-336 52-285 (624)
237 2ff4_A Probable regulatory pro 93.6 0.33 1.1E-05 44.3 9.5 69 139-208 175-249 (388)
238 4gns_B Protein CSD3, chitin bi 93.1 0.6 2.1E-05 46.2 10.9 127 105-231 252-398 (754)
239 1nzn_A CGI-135 protein, fissio 92.9 0.57 2E-05 34.4 7.9 77 119-196 19-100 (126)
240 4h7y_A Dual specificity protei 92.9 2.3 8E-05 32.1 12.6 36 98-133 10-51 (161)
241 1v54_E Cytochrome C oxidase po 92.7 0.36 1.2E-05 33.4 6.0 59 153-211 28-86 (109)
242 4fhn_B Nucleoporin NUP120; pro 92.6 5.9 0.0002 42.0 18.3 129 244-376 902-1049(1139)
243 4ady_A RPN2, 26S proteasome re 92.2 11 0.00038 38.3 21.7 258 109-376 382-657 (963)
244 1v54_E Cytochrome C oxidase po 91.9 1.5 5E-05 30.4 8.2 72 248-321 15-87 (109)
245 4ady_A RPN2, 26S proteasome re 91.5 13 0.00045 37.8 25.1 20 322-341 569-588 (963)
246 4fhn_B Nucleoporin NUP120; pro 91.2 4.3 0.00015 43.0 15.3 147 318-472 817-990 (1139)
247 4gns_B Protein CSD3, chitin bi 90.9 0.97 3.3E-05 44.8 9.4 129 136-268 249-397 (754)
248 2ff4_A Probable regulatory pro 90.3 2.2 7.6E-05 38.8 10.8 68 388-456 176-248 (388)
249 2y69_E Cytochrome C oxidase su 89.9 0.89 3E-05 33.4 6.0 57 154-210 72-128 (152)
250 2y69_E Cytochrome C oxidase su 88.7 3.3 0.00011 30.5 8.2 62 257-320 68-129 (152)
251 3o48_A Mitochondria fission 1 88.1 6.3 0.00022 29.1 9.8 71 378-448 35-108 (134)
252 3o48_A Mitochondria fission 1 87.9 4.1 0.00014 30.1 8.5 67 345-411 37-106 (134)
253 1zbp_A Hypothetical protein VP 87.6 8.3 0.00028 32.5 11.3 114 108-233 4-129 (273)
254 1y8m_A FIS1; mitochondria, unk 85.3 9.8 0.00034 28.5 10.9 66 346-411 37-105 (144)
255 1qsa_A Protein (soluble lytic 85.2 29 0.00098 33.7 32.5 271 52-341 56-347 (618)
256 3esl_A Checkpoint serine/threo 84.5 8.2 0.00028 30.9 9.3 53 364-416 95-148 (202)
257 1y8m_A FIS1; mitochondria, unk 83.3 12 0.00042 27.9 10.7 69 380-448 36-107 (144)
258 3txn_A 26S proteasome regulato 82.6 28 0.00095 31.5 23.7 28 171-198 20-47 (394)
259 4a1g_A Mitotic checkpoint seri 82.6 9.8 0.00033 28.9 8.7 49 120-168 84-134 (152)
260 3ffl_A Anaphase-promoting comp 82.1 5.4 0.00018 30.8 7.1 118 173-304 23-149 (167)
261 3lpz_A GET4 (YOR164C homolog); 81.7 26 0.00091 30.7 20.1 163 106-304 40-214 (336)
262 3ffl_A Anaphase-promoting comp 81.5 8.6 0.0003 29.6 8.1 60 244-304 23-90 (167)
263 4b4t_R RPN7, 26S proteasome re 81.0 26 0.00088 32.2 12.9 56 175-230 136-194 (429)
264 2p58_C Putative type III secre 80.4 12 0.00041 25.9 7.9 13 146-158 51-63 (116)
265 2jul_A Calsenilin; EF-hand, ca 80.3 20 0.0007 30.0 11.3 27 240-267 228-254 (256)
266 4a1g_A Mitotic checkpoint seri 79.1 17 0.00059 27.5 9.0 54 400-453 82-136 (152)
267 2uwj_G Type III export protein 77.8 11 0.00039 25.9 6.7 10 147-156 51-60 (115)
268 2qx5_A Nucleoporin NIC96; mRNA 76.8 58 0.002 31.8 15.6 80 247-339 300-382 (661)
269 3hra_A Ankyrin repeat family p 75.8 7.6 0.00026 30.9 7.0 19 177-195 76-94 (201)
270 1wdy_A 2-5A-dependent ribonucl 75.1 30 0.001 29.0 11.1 20 327-346 193-212 (285)
271 3esl_A Checkpoint serine/threo 72.5 35 0.0012 27.3 9.6 52 117-168 95-148 (202)
272 2wpv_A GET4, UPF0363 protein Y 72.0 49 0.0017 28.7 20.0 108 106-227 38-157 (312)
273 1zbp_A Hypothetical protein VP 71.7 45 0.0015 28.1 13.9 55 357-412 6-60 (273)
274 1qsa_A Protein (soluble lytic 67.9 92 0.0031 30.2 35.1 356 80-476 54-436 (618)
275 3eiq_C Programmed cell death p 66.7 70 0.0024 28.4 11.5 26 206-231 56-81 (358)
276 4aez_C MAD3, mitotic spindle c 66.4 41 0.0014 27.4 8.9 54 400-453 131-185 (223)
277 2d2s_A Exocyst complex compone 66.0 50 0.0017 27.3 9.7 88 142-231 25-118 (235)
278 2wvi_A Mitotic checkpoint seri 65.7 44 0.0015 25.7 10.2 56 400-455 77-133 (164)
279 4b4t_R RPN7, 26S proteasome re 65.3 83 0.0028 28.8 15.3 27 420-448 349-375 (429)
280 2uwj_G Type III export protein 60.8 39 0.0013 23.4 7.7 78 363-448 21-98 (115)
281 2p58_C Putative type III secre 59.8 41 0.0014 23.3 8.2 78 363-448 22-99 (116)
282 3txn_A 26S proteasome regulato 59.3 1E+02 0.0035 27.8 27.8 220 209-448 104-344 (394)
283 3jxi_A Vanilloid receptor-rela 56.9 12 0.00043 31.2 4.8 17 462-478 231-247 (260)
284 2nsz_A Programmed cell death p 56.8 32 0.0011 25.2 6.3 25 104-128 10-34 (129)
285 4g8k_A 2-5A-dependent ribonucl 56.8 98 0.0033 26.8 14.4 16 179-194 131-146 (337)
286 2nsz_A Programmed cell death p 56.2 43 0.0015 24.5 6.9 64 350-414 9-74 (129)
287 1n11_A Ankyrin; clathrin, BAND 56.2 81 0.0028 28.7 10.6 334 106-479 49-399 (437)
288 1mzb_A Ferric uptake regulatio 56.0 56 0.0019 24.1 7.7 35 433-467 33-67 (136)
289 2fe3_A Peroxide operon regulat 55.9 57 0.0019 24.4 7.8 42 426-467 29-70 (145)
290 1wdy_A 2-5A-dependent ribonucl 55.2 90 0.0031 25.9 11.9 44 359-402 190-235 (285)
291 2f6m_A Suppressor protein STP2 55.0 19 0.00064 22.6 3.9 45 104-148 5-49 (65)
292 3t8k_A Uncharacterized protein 54.8 74 0.0025 24.8 10.6 126 288-418 14-149 (186)
293 2xig_A Ferric uptake regulatio 54.4 60 0.0021 24.4 7.7 43 425-467 33-75 (150)
294 4ets_A Ferric uptake regulatio 53.9 51 0.0018 25.3 7.3 71 221-294 14-86 (162)
295 4ets_A Ferric uptake regulatio 52.4 40 0.0014 25.9 6.4 68 296-364 16-85 (162)
296 2fe3_A Peroxide operon regulat 52.0 71 0.0024 23.8 8.0 60 126-185 12-71 (145)
297 2xig_A Ferric uptake regulatio 51.7 74 0.0025 23.9 8.5 62 125-186 16-77 (150)
298 3pvs_A Replication-associated 51.2 1.5E+02 0.0051 27.3 13.8 55 360-414 267-326 (447)
299 2ion_A PDCD4, programmed cell 51.2 26 0.00089 26.6 5.1 63 104-166 12-76 (152)
300 1k1a_A B-cell lymphoma 3-encod 50.7 59 0.002 26.3 8.0 17 256-272 20-36 (241)
301 2rfa_A Transient receptor pote 50.6 73 0.0025 25.6 8.5 17 178-194 8-24 (232)
302 2wvi_A Mitotic checkpoint seri 50.3 84 0.0029 24.1 9.7 52 119-170 78-131 (164)
303 2rfa_A Transient receptor pote 50.3 64 0.0022 26.0 8.1 21 429-449 162-182 (232)
304 2w57_A Ferric uptake regulatio 49.8 63 0.0021 24.3 7.1 34 434-467 33-66 (150)
305 3hra_A Ankyrin repeat family p 49.7 59 0.002 25.4 7.6 39 437-475 157-197 (201)
306 3eyy_A Putative iron uptake re 49.7 53 0.0018 24.6 6.7 57 409-467 10-66 (145)
307 4aez_C MAD3, mitotic spindle c 49.6 32 0.0011 28.0 5.6 51 152-202 131-183 (223)
308 3lpz_A GET4 (YOR164C homolog); 49.2 1.4E+02 0.0047 26.2 23.1 25 382-406 135-159 (336)
309 3kea_A K1L; tropism, ANK repea 49.0 43 0.0015 28.5 6.9 14 224-238 44-57 (285)
310 1n11_A Ankyrin; clathrin, BAND 48.7 1.5E+02 0.0053 26.7 12.3 300 107-445 83-400 (437)
311 2zu6_B Programmed cell death p 48.6 1.3E+02 0.0046 25.9 12.4 81 386-467 169-251 (307)
312 2ion_A PDCD4, programmed cell 48.4 36 0.0012 25.8 5.5 65 350-415 11-77 (152)
313 3eu9_A Huntingtin-interacting 48.4 55 0.0019 26.4 7.4 177 283-478 45-232 (240)
314 2d2s_A Exocyst complex compone 48.3 86 0.0029 25.9 8.2 28 276-303 90-117 (235)
315 3eiq_C Programmed cell death p 48.2 1.5E+02 0.005 26.3 15.7 23 139-161 58-80 (358)
316 3eu9_A Huntingtin-interacting 47.8 90 0.0031 25.0 8.7 17 177-193 46-62 (240)
317 1k1a_A B-cell lymphoma 3-encod 47.4 1.1E+02 0.0037 24.6 10.0 17 147-163 18-34 (241)
318 2qx5_A Nucleoporin NIC96; mRNA 47.0 2.2E+02 0.0074 27.9 14.3 44 172-216 155-198 (661)
319 1sxj_C Activator 1 40 kDa subu 45.3 1.5E+02 0.0053 25.8 13.3 36 57-92 181-216 (340)
320 3ygs_P Procaspase 9; apoptosis 45.1 68 0.0023 22.0 6.1 64 122-190 25-88 (97)
321 3eyy_A Putative iron uptake re 45.0 73 0.0025 23.8 6.8 56 128-184 11-66 (145)
322 1s6c_A KV4 potassium channel-i 44.6 1E+02 0.0035 23.5 11.4 25 241-266 156-180 (183)
323 1mzb_A Ferric uptake regulatio 44.5 75 0.0026 23.3 6.8 59 127-185 9-68 (136)
324 3kea_A K1L; tropism, ANK repea 43.3 1.5E+02 0.0051 25.0 9.8 60 321-385 166-225 (285)
325 2fu4_A Ferric uptake regulatio 43.2 66 0.0023 20.9 7.4 58 409-467 8-66 (83)
326 2w57_A Ferric uptake regulatio 42.8 81 0.0028 23.7 6.8 60 127-186 8-68 (150)
327 3b7b_A Euchromatic histone-lys 42.6 17 0.00059 29.7 3.3 73 405-482 159-236 (237)
328 1jr3_A DNA polymerase III subu 42.3 1.7E+02 0.0057 25.8 10.1 31 138-169 249-279 (373)
329 4g8k_A 2-5A-dependent ribonucl 42.1 1.7E+02 0.0057 25.3 14.3 149 284-453 172-329 (337)
330 3b7b_A Euchromatic histone-lys 41.1 42 0.0014 27.2 5.5 19 358-376 217-235 (237)
331 3ltm_A Alpha-REP4; protein eng 40.9 1.3E+02 0.0045 23.7 20.6 111 99-219 31-141 (211)
332 2keb_A DNA polymerase subunit 40.8 76 0.0026 21.8 5.3 58 401-460 27-89 (101)
333 3f3f_C Nucleoporin NUP85; stru 40.5 1.1E+02 0.0037 29.1 8.3 50 172-222 518-567 (570)
334 3jxi_A Vanilloid receptor-rela 39.8 34 0.0012 28.4 4.8 19 428-446 232-250 (260)
335 1ug3_A EIF4GI, eukaryotic prot 39.6 62 0.0021 28.5 6.5 24 280-303 14-37 (339)
336 3mv2_A Coatomer subunit alpha; 38.9 1.9E+02 0.0066 25.1 11.0 51 363-413 185-237 (325)
337 2chq_A Replication factor C sm 38.1 1.9E+02 0.0064 24.7 14.2 32 59-90 175-206 (319)
338 2fu4_A Ferric uptake regulatio 38.0 82 0.0028 20.4 6.8 34 151-184 33-66 (83)
339 4gq2_M Nucleoporin NUP120; bet 37.5 2.1E+02 0.0073 29.5 10.9 109 176-291 816-950 (950)
340 2zu6_B Programmed cell death p 37.1 2E+02 0.007 24.8 11.7 68 351-419 169-238 (307)
341 1s1e_A KV channel interacting 36.7 1.6E+02 0.0056 23.6 11.6 64 99-162 69-135 (224)
342 1sxj_D Activator 1 41 kDa subu 36.6 2.1E+02 0.0072 24.8 12.3 42 139-182 269-310 (353)
343 3t8k_A Uncharacterized protein 35.2 1.6E+02 0.0054 22.9 8.7 132 283-415 41-183 (186)
344 2r9g_A AAA ATPase, central reg 33.6 1.8E+02 0.0062 23.2 10.3 53 361-414 27-84 (204)
345 1iqp_A RFCS; clamp loader, ext 33.6 2.3E+02 0.0077 24.2 12.1 19 149-167 249-268 (327)
346 3u61_B DNA polymerase accessor 33.0 2.3E+02 0.008 24.3 9.5 33 59-91 186-219 (324)
347 1wgl_A TOLL-interacting protei 32.8 86 0.0029 19.2 4.6 36 64-100 22-57 (59)
348 3mwm_A ZUR, putative metal upt 32.8 67 0.0023 23.8 4.8 50 137-186 15-64 (139)
349 2ijq_A Hypothetical protein; s 32.6 1.7E+02 0.0057 22.4 7.3 52 395-446 44-103 (161)
350 2wpv_A GET4, UPF0363 protein Y 32.6 2.4E+02 0.0084 24.4 21.2 45 117-161 13-59 (312)
351 3f3f_C Nucleoporin NUP85; stru 32.5 1.7E+02 0.0059 27.8 8.3 86 172-262 481-569 (570)
352 3ltm_A Alpha-REP4; protein eng 32.3 1.8E+02 0.0063 22.8 21.5 18 168-185 31-48 (211)
353 4b4t_S RPN3, 26S proteasome re 31.8 3.3E+02 0.011 25.6 11.1 65 313-377 231-299 (523)
354 2cos_A Serine/threonine protei 31.8 84 0.0029 18.7 4.1 18 462-479 29-48 (54)
355 3mwm_A ZUR, putative metal upt 31.7 79 0.0027 23.4 5.1 45 388-432 18-62 (139)
356 1bpo_A Protein (clathrin); cla 31.4 3.2E+02 0.011 25.3 10.6 23 138-160 364-386 (494)
357 3ygs_P Procaspase 9; apoptosis 29.8 1.3E+02 0.0046 20.4 6.3 62 53-120 25-87 (97)
358 3qil_A Clathrin heavy chain 1; 29.7 52 0.0018 23.7 3.4 54 102-157 33-86 (125)
359 2o03_A Probable zinc uptake re 29.7 97 0.0033 22.5 5.2 46 319-364 16-61 (131)
360 2o03_A Probable zinc uptake re 29.5 85 0.0029 22.9 4.9 44 389-432 16-59 (131)
361 2f6m_A Suppressor protein STP2 29.3 1.1E+02 0.0037 19.2 5.6 51 420-471 4-54 (65)
362 1y1x_A Leishmania major homolo 29.3 2E+02 0.0067 22.2 12.9 12 36-47 26-37 (191)
363 2p22_A Suppressor protein STP2 29.1 64 0.0022 25.0 4.1 48 102-149 112-159 (174)
364 3mv2_A Coatomer subunit alpha; 28.5 2.9E+02 0.01 24.0 9.5 53 398-450 185-239 (325)
365 1sxj_E Activator 1 40 kDa subu 28.2 1.5E+02 0.0052 25.9 7.3 18 151-168 279-296 (354)
366 2dod_A Transcription elongatio 28.2 1.1E+02 0.0038 20.2 4.6 34 219-254 15-48 (82)
367 1jr3_D DNA polymerase III, del 28.2 1.1E+02 0.0036 26.9 6.2 38 54-91 151-188 (343)
368 1ug3_A EIF4GI, eukaryotic prot 28.2 3E+02 0.01 24.0 9.6 26 243-269 13-38 (339)
369 1sxj_B Activator 1 37 kDa subu 27.8 2.8E+02 0.0096 23.5 10.2 29 61-89 182-210 (323)
370 2keb_A DNA polymerase subunit 27.4 1.5E+02 0.0052 20.3 6.1 34 152-185 26-59 (101)
371 1bd8_A P19INK4D CDK4/6 inhibit 27.2 59 0.002 24.1 3.8 13 464-476 141-153 (156)
372 3bge_A Predicted ATPase; struc 27.2 2.4E+02 0.0081 22.4 9.3 32 362-393 21-52 (201)
373 1wty_A Hypothetical protein TT 27.2 1.7E+02 0.0058 20.8 6.1 9 331-339 6-14 (119)
374 2b7e_A PRE-mRNA processing pro 27.2 73 0.0025 19.5 3.3 28 400-428 3-31 (59)
375 2p1h_A APAF-1, apoptotic prote 27.2 1.4E+02 0.0049 20.0 7.2 61 120-187 24-84 (94)
376 3c1d_A Protein ORAA, regulator 26.3 2.1E+02 0.0073 21.6 10.9 49 365-415 47-95 (159)
377 4b4t_S RPN3, 26S proteasome re 25.8 4.2E+02 0.014 24.9 13.6 63 170-232 231-298 (523)
378 3e3v_A Regulatory protein RECX 25.8 2.3E+02 0.008 21.9 9.5 51 329-380 49-99 (177)
379 2r9g_A AAA ATPase, central reg 25.3 2.6E+02 0.0089 22.3 9.1 17 256-272 28-44 (204)
380 3ph0_C ASCG; type III secretio 24.9 1.2E+02 0.0041 18.3 3.8 13 81-93 22-34 (61)
381 1bpo_A Protein (clathrin); cla 24.8 4.2E+02 0.014 24.5 13.3 154 65-230 329-482 (494)
382 2pnn_A Transient receptor pote 24.0 80 0.0027 26.3 4.5 191 281-478 14-255 (273)
383 3aji_A 26S proteasome non-ATPa 24.0 2.7E+02 0.0092 22.0 8.1 180 247-452 9-199 (231)
384 2ijq_A Hypothetical protein; s 23.9 2.4E+02 0.0083 21.5 7.6 53 428-480 42-102 (161)
385 3e3v_A Regulatory protein RECX 22.9 2.7E+02 0.0091 21.6 7.1 115 363-480 48-164 (177)
386 2yru_A Steroid receptor RNA ac 22.2 1.8E+02 0.0063 20.8 5.2 41 336-376 49-89 (118)
387 3l6a_A Eukaryotic translation 21.9 4.2E+02 0.014 23.5 10.2 128 315-446 14-150 (364)
388 3aji_A 26S proteasome non-ATPa 21.7 2.1E+02 0.007 22.8 6.5 19 108-126 10-28 (231)
389 3ctd_A Putative ATPase, AAA fa 21.5 3.2E+02 0.011 22.0 10.3 32 362-393 49-80 (213)
390 4gq2_M Nucleoporin NUP120; bet 21.4 6.8E+02 0.023 25.7 12.8 116 200-327 808-950 (950)
391 1uzc_A Hypothetical protein FL 21.3 1.5E+02 0.0051 18.9 4.1 34 219-254 13-46 (71)
392 3t5v_B Nuclear mRNA export pro 21.2 2.5E+02 0.0084 25.9 7.2 61 349-409 177-246 (455)
393 3i5p_A Nucleoporin NUP170; hel 21.1 5.2E+02 0.018 24.3 10.8 34 278-312 218-251 (525)
394 2etb_A Transient receptor pote 20.7 2.6E+02 0.0089 22.7 7.0 54 322-375 8-70 (256)
395 1zla_K Latent nuclear antigen; 20.4 50 0.0017 15.3 1.2 17 1-17 1-17 (26)
396 3bu8_A Telomeric repeat-bindin 20.3 3.5E+02 0.012 21.9 12.8 17 179-195 123-139 (235)
397 3twr_A Tankyrase-2; ankyrin re 20.3 1.9E+02 0.0067 21.3 5.7 118 320-452 12-135 (165)
398 2yru_A Steroid receptor RNA ac 20.1 1.7E+02 0.0059 20.9 4.7 38 267-304 51-88 (118)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.8e-35 Score=293.54 Aligned_cols=402 Identities=10% Similarity=-0.025 Sum_probs=312.3
Q ss_pred CCHHHHHHHHH--hhcCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcC-----------
Q 038748 65 VSQETVEQVLK--FSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKEN----------- 131 (482)
Q Consensus 65 ~~~~~~~~ll~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~----------- 131 (482)
|+...+..+.. ...|+++.|..+|+.+.. ..+++.+++.++..|.+.|++++|.++|+++....
T Consensus 115 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 191 (597)
T 2xpi_A 115 GNPNDAFWLAQVYCCTGDYARAKCLLTKEDL---YNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLM 191 (597)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG---GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------C
T ss_pred CCchHHHHHHHHHHHcCcHHHHHHHHHHHhc---cccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccc
Confidence 44444444443 235566666666665432 23556666666666666666666666666422221
Q ss_pred -----CCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHH-------------------------------
Q 038748 132 -----VLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNS------------------------------- 175 (482)
Q Consensus 132 -----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~------------------------------- 175 (482)
..+..+|+.++.+|.+.|++++|.++|++|.+.+.. +...+..
T Consensus 192 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 270 (597)
T 2xpi_A 192 QDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAF 270 (597)
T ss_dssp CCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHH
T ss_pred cccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHH
Confidence 123556666666666666666666666666654321 2222222
Q ss_pred -------HHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHH
Q 038748 176 -------LLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYL 248 (482)
Q Consensus 176 -------ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~ 248 (482)
++..|.+.|++++|.++|+++... +++..+|+.++.+|.+.|++++|..+|+++... .|++..++..++
T Consensus 271 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~l~ 346 (597)
T 2xpi_A 271 LRSLYMLKLNKTSHEDELRRAEDYLSSINGL-EKSSDLLLCKADTLFVRSRFIDVLAITTKILEI---DPYNLDVYPLHL 346 (597)
T ss_dssp HHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCCTTHHHHH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHhhcC-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHc---CcccHHHHHHHH
Confidence 233444556666666666665443 578999999999999999999999999999854 566788999999
Q ss_pred HHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCC
Q 038748 249 ITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNE 328 (482)
Q Consensus 249 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 328 (482)
..+... |++++|.++++++.+.. +.+..++..++..|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|+
T Consensus 347 ~~~~~~-g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~ 422 (597)
T 2xpi_A 347 ASLHES-GEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD--PQFGPAWIGFAHSFAIEGE 422 (597)
T ss_dssp HHHHHH-TCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHh-CCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCC
Confidence 999999 99999999999998653 5578899999999999999999999999997321 3468899999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHH
Q 038748 329 TGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKY 408 (482)
Q Consensus 329 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 408 (482)
+++|+++|+++.+.+. .+..+|+.++.+|.+.|++++|.++|+++.+.... +..+|+.++.+|.+.|++++|.++|++
T Consensus 423 ~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 500 (597)
T 2xpi_A 423 HDQAISAYTTAARLFQ-GTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQY-DPLLLNELGVVAFNKSDMQTAINHFQN 500 (597)
T ss_dssp HHHHHHHHHHHHHTTT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 9999999999998743 47889999999999999999999999999886543 788999999999999999999999999
Q ss_pred HHHc----CCCCC--hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHhh
Q 038748 409 MIEN----HCSDL--SETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKCKA 481 (482)
Q Consensus 409 m~~~----~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 481 (482)
+.+. +..|+ ..+|..++.+|.+.|++++|.++|+++.+.+ +.+..+|..+..+|.+.|++++|.++++++.+
T Consensus 501 ~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 578 (597)
T 2xpi_A 501 ALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLA 578 (597)
T ss_dssp HHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 9875 66787 6799999999999999999999999998876 34789999999999999999999999998864
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.6e-35 Score=293.87 Aligned_cols=402 Identities=8% Similarity=-0.086 Sum_probs=345.0
Q ss_pred CCHHHHHHHHH--hhcCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHH
Q 038748 65 VSQETVEQVLK--FSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVF 142 (482)
Q Consensus 65 ~~~~~~~~ll~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li 142 (482)
++...+..++. ...|++++|..+|+.+.. ..|+..++..++..|.+.|++++|..+|+.+... .++..+++.++
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~ 157 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLD---ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY-NRSSACRYLAA 157 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHh---hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc-ccchhHHHHHH
Confidence 34556667776 457999999999998874 3468899999999999999999999999998654 46788999999
Q ss_pred HHHHhhCChhhHHHHHHHHHhc---------------CCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHH
Q 038748 143 SSYVVADRVKDAITTFDVMEQY---------------GCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTY 207 (482)
Q Consensus 143 ~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 207 (482)
.+|.+.|++++|.++|+++... +...+..+|+.++.+|.+.|++++|.++|+++....+.+...+
T Consensus 158 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 237 (597)
T 2xpi_A 158 FCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAF 237 (597)
T ss_dssp HHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHH
Confidence 9999999999999999853221 2334688999999999999999999999999865334344443
Q ss_pred HHH--------------------------------------HHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHH
Q 038748 208 AIL--------------------------------------LEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLI 249 (482)
Q Consensus 208 ~~l--------------------------------------~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~ 249 (482)
..+ +..|.+.|++++|.++|+++... |++..+++.++.
T Consensus 238 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~l~~ 313 (597)
T 2xpi_A 238 DQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL----EKSSDLLLCKAD 313 (597)
T ss_dssp HHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG----GGCHHHHHHHHH
T ss_pred HHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC----CchHHHHHHHHH
Confidence 333 55677889999999999998742 457889999999
Q ss_pred HHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCH
Q 038748 250 TLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNET 329 (482)
Q Consensus 250 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 329 (482)
.+.+. |++++|+++|+++.+.+ +.+..++..++.++.+.|++++|.++++.+.+. .+.+..+|+.++.+|.+.|++
T Consensus 314 ~~~~~-g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~ 389 (597)
T 2xpi_A 314 TLFVR-SRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDR--HPEKAVTWLAVGIYYLCVNKI 389 (597)
T ss_dssp HHHHT-TCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSHHHHHHHHHHHHHTTCH
T ss_pred HHHHh-cCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHhccH
Confidence 99999 99999999999999865 347788999999999999999999999999732 255788999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHH
Q 038748 330 GAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYM 409 (482)
Q Consensus 330 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 409 (482)
++|.++|+++.+... .+..+|+.++.+|.+.|++++|.++|+++.+.+. .+..+|+.++.+|.+.|++++|.++|+.+
T Consensus 390 ~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 467 (597)
T 2xpi_A 390 SEARRYFSKSSTMDP-QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ-GTHLPYLFLGMQHMQLGNILLANEYLQSS 467 (597)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999988532 3678999999999999999999999999998754 37889999999999999999999999999
Q ss_pred HHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCCC--HHHHHHHHHHHHHhccHHHHHHHHHHHhh
Q 038748 410 IENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEK----GIQVT--PFALSKLKQILIKARKEAVYEELLKKCKA 481 (482)
Q Consensus 410 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 481 (482)
.+.. +.+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++++++.+
T Consensus 468 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 544 (597)
T 2xpi_A 468 YALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLL 544 (597)
T ss_dssp HHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 9864 346789999999999999999999999999876 66787 78999999999999999999999998764
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=5.4e-33 Score=264.66 Aligned_cols=206 Identities=12% Similarity=0.104 Sum_probs=152.8
Q ss_pred HHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCC---------HH
Q 038748 261 TVNSLKRMMERGCNPG-MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNE---------TG 330 (482)
Q Consensus 261 a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---------~~ 330 (482)
+..+.+++.+.+.... ...++.+|++|++.|++++|.++|++|. +.|+.||..+||+||.+|++.+. ++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~-~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEAR-RNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHH-HHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH-HcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 3444455555554433 3356677777777777777777777774 66777777777777777776544 57
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHH
Q 038748 331 AAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMI 410 (482)
Q Consensus 331 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 410 (482)
+|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 78888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Q 038748 411 ENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKAR 467 (482)
Q Consensus 411 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 467 (482)
+.|+.||..||++||.+|++.|++++|.++|++|.+.|..|+..||+.++..|...+
T Consensus 168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~ 224 (501)
T 4g26_A 168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEV 224 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSHH
T ss_pred hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcCc
Confidence 888888888888888888888888888888888888888888888888887776543
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=5e-32 Score=258.05 Aligned_cols=186 Identities=14% Similarity=0.116 Sum_probs=127.4
Q ss_pred hHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC---------hhHHHHHHHHhhcccCCCCCH
Q 038748 243 AYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQN---------LRGAEFIWGAMVGRIGFRPDT 313 (482)
Q Consensus 243 ~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~---------~~~a~~~~~~~~~~~~~~~~~ 313 (482)
.++.+|..+++. |++++|+++|++|.+.|+.||..||+.+|.+|++.+. ++.|.++|++|. ..|+.||.
T Consensus 28 ~l~~~id~c~k~-G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~-~~G~~Pd~ 105 (501)
T 4g26_A 28 LLKQKLDMCSKK-GDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMI-VDKVVPNE 105 (501)
T ss_dssp HHHHHHHHTTTS-CCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHH-HTTCCCCH
T ss_pred HHHHHHHHHHhC-CCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHH-HhCCCCCH
Confidence 455566666666 6666666666666666666666666666666665443 456667777773 66677777
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHH
Q 038748 314 HMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVY 393 (482)
Q Consensus 314 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 393 (482)
.+|++||.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|.+.|+.||..||++||.+|
T Consensus 106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~ 185 (501)
T 4g26_A 106 ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVS 185 (501)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred hcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 038748 394 MDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCD 430 (482)
Q Consensus 394 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 430 (482)
++.|++++|.+++++|.+.|..|+..||+.++..|+.
T Consensus 186 ~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 186 MDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred hhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 7777777777777777777777777777777666654
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.98 E-value=1.2e-27 Score=223.98 Aligned_cols=378 Identities=11% Similarity=0.012 Sum_probs=324.9
Q ss_pred hhcCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHH
Q 038748 76 FSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAI 155 (482)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 155 (482)
...|+++.|.+.|..+.. ..+.+...+..+...+...|++++|...++......+.+..+|..+..++.+.|++++|.
T Consensus 10 ~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~ 87 (388)
T 1w3b_A 10 YQAGDFEAAERHCMQLWR--QEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAI 87 (388)
T ss_dssp HHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHH
Confidence 457999999999998776 345567788888889999999999999999999998889999999999999999999999
Q ss_pred HHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcC
Q 038748 156 TTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVG 235 (482)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 235 (482)
+.|+++.+... .+..+|..+..++...|++++|.+.|+.+....+.+...+..+...+...|++++|...|+++...
T Consensus 88 ~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-- 164 (388)
T 1w3b_A 88 EHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET-- 164 (388)
T ss_dssp HHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHcCc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--
Confidence 99999988642 356679999999999999999999999976555667778889999999999999999999999854
Q ss_pred CCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHH
Q 038748 236 WDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHM 315 (482)
Q Consensus 236 ~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 315 (482)
.|++..+|..+...+... |++++|++.|+++.+.. +.+...+..+...+...|++++|...+.+.++.. +.+..+
T Consensus 165 -~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~ 239 (388)
T 1w3b_A 165 -QPNFAVAWSNLGCVFNAQ-GEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS--PNHAVV 239 (388)
T ss_dssp -CTTCHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC--TTCHHH
T ss_pred -CCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cCCHHH
Confidence 787888999999999999 99999999999999864 3357788899999999999999999999987331 335788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhc
Q 038748 316 YNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMD 395 (482)
Q Consensus 316 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 395 (482)
+..+...|...|++++|+..|+++.+.+.. +..+|..+...+.+.|++++|...|+++.+.. +.+..++..+...+.+
T Consensus 240 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 317 (388)
T 1w3b_A 240 HGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHH
Confidence 999999999999999999999999986432 56789999999999999999999999998864 3477889999999999
Q ss_pred CCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Q 038748 396 SDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKAR 467 (482)
Q Consensus 396 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 467 (482)
.|++++|.+.++++.+.. +.+..++..+..+|.+.|++++|...|+++.+... .+...|..+...+.+.|
T Consensus 318 ~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p-~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 318 QGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP-TFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp TTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTC
T ss_pred cCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHhHHHHHHHcc
Confidence 999999999999998753 34457899999999999999999999999987542 24566766666665554
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=1.8e-27 Score=222.84 Aligned_cols=362 Identities=10% Similarity=-0.076 Sum_probs=318.9
Q ss_pred HHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChH
Q 038748 108 VDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTI 187 (482)
Q Consensus 108 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 187 (482)
...+.+.|++++|.+.++.+.+..+.+...+..+...+...|++++|...++...+.. +.+..+|..+..++.+.|+++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHH
Confidence 4566788999999999999999988888889999999999999999999999988864 357889999999999999999
Q ss_pred hHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHH
Q 038748 188 DAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKR 267 (482)
Q Consensus 188 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~ 267 (482)
+|.+.|+++....+.+..+|..+..++.+.|++++|...|+++... .|++...+..+...+... |++++|.+.|++
T Consensus 85 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~ 160 (388)
T 1w3b_A 85 EAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY---NPDLYCVRSDLGNLLKAL-GRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH---CTTCTHHHHHHHHHHHTT-SCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHc-cCHHHHHHHHHH
Confidence 9999999976655667788999999999999999999999999754 788888888888888888 999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 038748 268 MMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPD 347 (482)
Q Consensus 268 m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 347 (482)
+.+.. +-+..++..+...+...|++++|...|+++++.. +.+...|..+...+...|++++|+..|++..+... -+
T Consensus 161 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~ 236 (388)
T 1w3b_A 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD--PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NH 236 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-TC
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CC
Confidence 98864 3357889999999999999999999999997332 33577889999999999999999999999887532 25
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 038748 348 IQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAG 427 (482)
Q Consensus 348 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 427 (482)
..++..+...+...|++++|...|+++.+.+.. +..+|..+..++.+.|++++|.+.|+++.+.. +.+..+|+.+...
T Consensus 237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 314 (388)
T 1w3b_A 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANI 314 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHH
Confidence 778899999999999999999999999987543 56789999999999999999999999999864 4567899999999
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHhh
Q 038748 428 LCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKCKA 481 (482)
Q Consensus 428 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 481 (482)
+...|++++|...++++.+.. +.+..++..+..++.+.|++++|.+.++++.+
T Consensus 315 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 315 KREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999999999999998764 34678899999999999999999999998864
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=3e-23 Score=198.19 Aligned_cols=362 Identities=9% Similarity=-0.027 Sum_probs=283.7
Q ss_pred CCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHH
Q 038748 96 NDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNS 175 (482)
Q Consensus 96 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 175 (482)
..+.+...|..+...+.+.|++++|+.+|+++.+..+.+..+|..+..++...|++++|...|+.+.+.+. .+..++..
T Consensus 21 ~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~ 99 (450)
T 2y4t_A 21 QSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM-DFTAARLQ 99 (450)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CcHHHHHH
Confidence 34556788999999999999999999999999988888889999999999999999999999999988753 36788889
Q ss_pred HHHHHHhcCChHhHHHHHHHhhCCCCCCH---HHHHHHH------------HHHHhcCCHHHHHHHHHHhHHhcCCCCCC
Q 038748 176 LLSAICRDGKTIDAWQFLRVVDGRIKPDN---DTYAILL------------EGWEKERDVANAKKTFGEMVIEVGWDPDN 240 (482)
Q Consensus 176 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~------------~~~~~~~~~~~a~~~~~~~~~~~~~~p~~ 240 (482)
+..+|...|++++|.+.|+.+....+.+. ..+..+. ..+.+.|++++|...|+++... .|++
T Consensus 100 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~ 176 (450)
T 2y4t_A 100 RGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV---CVWD 176 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCC
Confidence 99999999999999999999876545555 6666554 4488999999999999999753 6777
Q ss_pred hhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCC-CHHHHHHH
Q 038748 241 VPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRP-DTHMYNMM 319 (482)
Q Consensus 241 ~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l 319 (482)
..++..+...+... |++++|++.|+++.+.. +.+..++..+...+...|++++|...|+.+.+. .| +...+..+
T Consensus 177 ~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~ 251 (450)
T 2y4t_A 177 AELRELRAECFIKE-GEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL---DQDHKRCFAHY 251 (450)
T ss_dssp HHHHHHHHHHHHHT-TCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCChHHHHHHH
Confidence 88899999999999 99999999999988753 346788999999999999999999999998732 34 34444444
Q ss_pred ------------HHHHHhcCCHHHHHHHHHHHHHCCCCCC-----HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccC
Q 038748 320 ------------ISLYCYSNETGAAMKLLDEMVYNGAFPD-----IQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLN 382 (482)
Q Consensus 320 ------------i~~~~~~~~~~~a~~~~~~m~~~g~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 382 (482)
...+...|++++|...|+++.+. .|+ ...+..+...+.+.|++++|...++++.+... .+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p-~~ 328 (450)
T 2y4t_A 252 KQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEP-DN 328 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TC
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-cc
Confidence 78889999999999999999884 344 34678888999999999999999999887542 26
Q ss_pred hhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHH------------HHhcC-----ChhHHHHHHHHH
Q 038748 383 HENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLS-ETGNLLVAG------------LCDMH-----MLPEAVKYAKGM 444 (482)
Q Consensus 383 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~------------~~~~g-----~~~~A~~~~~~m 444 (482)
...|..+..+|...|++++|.+.++.+.+. .|+. ..+..+..+ |...| +.+++.+.++++
T Consensus 329 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~ 406 (450)
T 2y4t_A 329 VNALKDRAEAYLIEEMYDEAIQDYETAQEH--NENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKL 406 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHH
Confidence 788999999999999999999999999874 4543 455555422 33334 567778888864
Q ss_pred -HHcCC--CCCH-------HHHHHHHHHHHHhccHHH
Q 038748 445 -AEKGI--QVTP-------FALSKLKQILIKARKEAV 471 (482)
Q Consensus 445 -~~~~~--~~~~-------~~~~~l~~~~~~~g~~~~ 471 (482)
.+... .++. ..+..+..+|...|+.++
T Consensus 407 ~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~ 443 (450)
T 2y4t_A 407 ALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEM 443 (450)
T ss_dssp HHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGG
T ss_pred HHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 33221 1222 256666666666666543
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=4.2e-23 Score=200.65 Aligned_cols=393 Identities=11% Similarity=0.002 Sum_probs=284.1
Q ss_pred hhcCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHH
Q 038748 76 FSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAI 155 (482)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 155 (482)
...|+++.|+..|+.+... . |+..+|..+..++...|++++|...|+++.+.++.+..+|..+..++...|++++|.
T Consensus 17 ~~~g~~~~A~~~~~~al~~-~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 93 (514)
T 2gw1_A 17 FRNKKYDDAIKYYNWALEL-K--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAM 93 (514)
T ss_dssp HHTSCHHHHHHHHHHHHHH-C--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhccHHHHHHHHHHHHhc-C--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHH
Confidence 4579999999999988873 2 689999999999999999999999999999998888899999999999999999999
Q ss_pred HHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHH-----------------------------------HhhC--
Q 038748 156 TTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-----------------------------------VVDG-- 198 (482)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~-----------------------------------~~~~-- 198 (482)
..|+.+.+.+. ++......++..+........+.+.+. .+..
T Consensus 94 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (514)
T 2gw1_A 94 FDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFK 172 (514)
T ss_dssp HHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSC
T ss_pred HHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcC
Confidence 99999998763 344444444444333222222211111 0000
Q ss_pred -C-------CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHhHHh----cCCC-------CCChhhHHHHHHHHHccCC
Q 038748 199 -R-------IKPDNDTYAILLEGWEK---ERDVANAKKTFGEMVIE----VGWD-------PDNVPAYDSYLITLLKGCD 256 (482)
Q Consensus 199 -~-------~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~----~~~~-------p~~~~~~~~l~~~~~~~~~ 256 (482)
. .+.+...+......+.. .|++++|...|+++... .... |.+..++..+...+... |
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 251 (514)
T 2gw1_A 173 PELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLK-N 251 (514)
T ss_dssp CCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHS-S
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHC-C
Confidence 0 01124444444444443 78888888888887751 0112 33455677777778888 8
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 038748 257 GIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLL 336 (482)
Q Consensus 257 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 336 (482)
++++|...++++.+... +...+..+...+...|++++|...++.+.+.. +.+..++..+...|...|++++|...|
T Consensus 252 ~~~~A~~~~~~~l~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~ 327 (514)
T 2gw1_A 252 DPLGAHEDIKKAIELFP--RVNSYIYMALIMADRNDSTEYYNYFDKALKLD--SNNSSVYYHRGQMNFILQNYDQAGKDF 327 (514)
T ss_dssp CHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC--TTCTHHHHHHHHHHHHTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHhhCc--cHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC--cCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 88888888888877643 37777778888888888888888888876221 335667788888888888888888888
Q ss_pred HHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCC-
Q 038748 337 DEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCS- 415 (482)
Q Consensus 337 ~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~- 415 (482)
++..+.... +...+..+...+...|++++|..+++.+.+.... +...+..+...|...|++++|.+.++.+.+....
T Consensus 328 ~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 405 (514)
T 2gw1_A 328 DKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE-APEVPNFFAEILTDKNDFDKALKQYDLAIELENKL 405 (514)
T ss_dssp HHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 888776432 4567777778888888888888888888765332 4567777888888888888888888887753211
Q ss_pred CC----hhhHHHHHHHHHh---cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHh
Q 038748 416 DL----SETGNLLVAGLCD---MHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKCK 480 (482)
Q Consensus 416 p~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 480 (482)
++ ...|..+...+.. .|++++|...++++.+.. +.+...+..+..++.+.|++++|.+.+++..
T Consensus 406 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 476 (514)
T 2gw1_A 406 DGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESA 476 (514)
T ss_dssp SSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 11 2377778888888 888888888888887764 2356777788888888888888888887765
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=3.6e-22 Score=190.69 Aligned_cols=330 Identities=12% Similarity=0.076 Sum_probs=267.0
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhC
Q 038748 119 AMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDG 198 (482)
Q Consensus 119 ~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 198 (482)
.+...+.+.....+.+...+..+...+.+.|++++|..+|+.+.+.. +.+..++..+..++...|++++|...|+.+..
T Consensus 10 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 88 (450)
T 2y4t_A 10 GVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQ 88 (450)
T ss_dssp -------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 44455556666666778899999999999999999999999998864 34788999999999999999999999999776
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCCh---hhHHHHH------------HHHHccCCChHHHHH
Q 038748 199 RIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNV---PAYDSYL------------ITLLKGCDGIYETVN 263 (482)
Q Consensus 199 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~---~~~~~l~------------~~~~~~~~~~~~a~~ 263 (482)
..+.+..++..+..+|.+.|++++|...|+++. ...|++. ..+..+. ..+... |++++|++
T Consensus 89 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~A~~ 164 (450)
T 2y4t_A 89 LKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVL---KSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGS-GDYTAAIA 164 (450)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---TSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH---hcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 556788999999999999999999999999997 4577666 6666553 347788 99999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 038748 264 SLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNG 343 (482)
Q Consensus 264 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 343 (482)
.|+++.+.. +.+...+..+..++.+.|++++|.++|..+.+.. +.+..+|..+...|...|++++|+..|+++.+.
T Consensus 165 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 240 (450)
T 2y4t_A 165 FLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK--NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL- 240 (450)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 999998864 4467889999999999999999999999997432 456889999999999999999999999999875
Q ss_pred CCCC-HhhHHHH------------HHHHHhcCCHHHHHHHHHHHHhCCCccC-----hhhHHHHHHHHhcCCChHHHHHH
Q 038748 344 AFPD-IQTYNIL------------FEFLVKGRKLWEASGLFNEMVKNENVLN-----HENCRAAVRVYMDSDDPYVAIKF 405 (482)
Q Consensus 344 ~~p~-~~~~~~l------------l~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~~~~~~a~~~ 405 (482)
.|+ ...+..+ ...+...|++++|..+|+.+.+.. |+ ...+..+..++.+.|++++|.+.
T Consensus 241 -~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 317 (450)
T 2y4t_A 241 -DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRV 317 (450)
T ss_dssp -CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred -CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 344 3334433 788999999999999999998853 33 34788889999999999999999
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 038748 406 WKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQI 462 (482)
Q Consensus 406 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~ 462 (482)
++.+.+.. +.+...|..+..+|...|++++|...|+++.+... -+...+..+..+
T Consensus 318 ~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~ 372 (450)
T 2y4t_A 318 CSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNE-NDQQIREGLEKA 372 (450)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS-SCHHHHHHHHHH
T ss_pred HHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-chHHHHHHHHHH
Confidence 99998753 34568999999999999999999999999987542 245566555543
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=2.6e-22 Score=195.09 Aligned_cols=372 Identities=9% Similarity=-0.073 Sum_probs=290.5
Q ss_pred CCHHHHHHHHH--hhcCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHH
Q 038748 65 VSQETVEQVLK--FSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVF 142 (482)
Q Consensus 65 ~~~~~~~~ll~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li 142 (482)
|++..+..+.. ...|+++.|...|+.+.. ..+.+..+|..+..++...|++++|...|+++...++.+......++
T Consensus 37 p~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 114 (514)
T 2gw1_A 37 EDPVFYSNLSACYVSVGDLKKVVEMSTKALE--LKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPML 114 (514)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHH
T ss_pred ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhc--cChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHH
Confidence 56666655555 457999999999998877 44567889999999999999999999999999998876666566666
Q ss_pred HHHHhhCChhhHHHHHHHHHhc-----------------------------------CC---------CCCHhhHHHHHH
Q 038748 143 SSYVVADRVKDAITTFDVMEQY-----------------------------------GC---------KHDVFALNSLLS 178 (482)
Q Consensus 143 ~~~~~~~~~~~a~~~~~~~~~~-----------------------------------~~---------~~~~~~~~~ll~ 178 (482)
..+........+.+.+..+... .. ..+...+..+..
T Consensus 115 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (514)
T 2gw1_A 115 ERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGL 194 (514)
T ss_dssp HHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHH
Confidence 5555443333333333211110 00 011334444444
Q ss_pred HHHh---cCChHhHHHHHHHhhC-----C--C-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCCh
Q 038748 179 AICR---DGKTIDAWQFLRVVDG-----R--I-------KPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNV 241 (482)
Q Consensus 179 ~~~~---~g~~~~a~~~~~~~~~-----~--~-------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~ 241 (482)
.+.. .|++++|..+|+++.. . . +.+..++..+...+...|++++|...|+++... .|+ .
T Consensus 195 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~~~-~ 270 (514)
T 2gw1_A 195 SNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL---FPR-V 270 (514)
T ss_dssp HHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH---CCC-H
T ss_pred HHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---Ccc-H
Confidence 4444 8999999999998644 1 1 334678889999999999999999999999854 565 7
Q ss_pred hhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHH
Q 038748 242 PAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMIS 321 (482)
Q Consensus 242 ~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 321 (482)
.++..+...+... |++++|.+.++++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+..
T Consensus 271 ~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~ 346 (514)
T 2gw1_A 271 NSYIYMALIMADR-NDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD--PENIFPYIQLAC 346 (514)
T ss_dssp HHHHHHHHHHHTS-SCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC--SSCSHHHHHHHH
T ss_pred HHHHHHHHHHHHC-CCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--hhhHHHHHHHHH
Confidence 8889999999999 99999999999998764 3456788899999999999999999999997332 335778899999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCc-cC----hhhHHHHHHHHhc-
Q 038748 322 LYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENV-LN----HENCRAAVRVYMD- 395 (482)
Q Consensus 322 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~- 395 (482)
.|...|++++|...++++.+... .+...+..+...+...|++++|...++.+.+.... ++ ...+..+..+|..
T Consensus 347 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~ 425 (514)
T 2gw1_A 347 LAYRENKFDDCETLFSEAKRKFP-EAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRN 425 (514)
T ss_dssp HTTTTTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTS
T ss_pred HHHHcCCHHHHHHHHHHHHHHcc-cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999988532 25678888999999999999999999998874322 11 3378899999999
Q ss_pred --CCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 038748 396 --SDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448 (482)
Q Consensus 396 --~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 448 (482)
.|++++|.+.++.+.+.. +.+..++..+...|.+.|++++|...|++..+..
T Consensus 426 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 426 PTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp CCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 999999999999998864 3355788889999999999999999999998876
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.92 E-value=4.1e-21 Score=187.76 Aligned_cols=388 Identities=13% Similarity=0.049 Sum_probs=276.6
Q ss_pred hhcCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHH
Q 038748 76 FSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAI 155 (482)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 155 (482)
...|+++.|+..|+.+.. ..+.++.+|..+..++.+.|++++|++.|+++.+.++.+..++..+..++...|++++|.
T Consensus 36 ~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 113 (537)
T 3fp2_A 36 FTAKNFNEAIKYYQYAIE--LDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAM 113 (537)
T ss_dssp HHTTCCC-CHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHhccHHHHHHHHHHHHh--hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHH
Confidence 457999999999998887 455678999999999999999999999999999998888999999999999999999999
Q ss_pred HHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCC-------CCCCHHH----------------------
Q 038748 156 TTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-------IKPDNDT---------------------- 206 (482)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~---------------------- 206 (482)
..|+.+ .. .|+. .+..+..+...+....|...++.+... ..|+...
T Consensus 114 ~~~~~~-~~--~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (537)
T 3fp2_A 114 FDLSVL-SL--NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSN 188 (537)
T ss_dssp HHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCS
T ss_pred HHHHHH-hc--CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccc
Confidence 999643 32 2222 222333444555556677766665321 1122221
Q ss_pred --------HHHHHHHHHh--------cCCHHHHHHHHHHhHHhcCCCCCChh-------hHHHHHHHHHccCCChHHHHH
Q 038748 207 --------YAILLEGWEK--------ERDVANAKKTFGEMVIEVGWDPDNVP-------AYDSYLITLLKGCDGIYETVN 263 (482)
Q Consensus 207 --------~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~p~~~~-------~~~~l~~~~~~~~~~~~~a~~ 263 (482)
...+...+.. .|++++|..+|+++. ...|++.. ++..+...+... |++++|.+
T Consensus 189 ~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l---~~~p~~~~~~~~~~~~~~~~g~~~~~~-~~~~~A~~ 264 (537)
T 3fp2_A 189 YDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLL---SANTVDDPLRENAALALCYTGIFHFLK-NNLLDAQV 264 (537)
T ss_dssp SCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHH---C--CCCHHHHHHHHHHHHHHHHHHHHT-TCHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH---HHCCCcchhhHHHHHHHHHHHHHHHhc-ccHHHHHH
Confidence 1222222211 247788888888886 34665433 355555666777 88889988
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 038748 264 SLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNG 343 (482)
Q Consensus 264 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 343 (482)
.+++..+.. |+...+..+...+...|++++|...+..+.+.. +.+..+|..+...|...|++++|...|++..+..
T Consensus 265 ~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 340 (537)
T 3fp2_A 265 LLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN--PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN 340 (537)
T ss_dssp HHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 888888754 557777888888888888999988888886332 3457778888888888889999998888888753
Q ss_pred CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCC-----CCCh
Q 038748 344 AFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHC-----SDLS 418 (482)
Q Consensus 344 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-----~p~~ 418 (482)
.. +...+..+...+...|++++|..+++++.+.... +...+..+...|...|++++|.+.|+.+.+... ....
T Consensus 341 ~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 418 (537)
T 3fp2_A 341 PE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT-LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGI 418 (537)
T ss_dssp TT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTT
T ss_pred CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHH
Confidence 22 4567778888888888999999888888876433 556778888888888999999888888775321 0111
Q ss_pred hhHHHHHHHHHhc----------CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHhh
Q 038748 419 ETGNLLVAGLCDM----------HMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKCKA 481 (482)
Q Consensus 419 ~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 481 (482)
..+..+...+... |++++|...|+++.+... .+...+..+..++.+.|++++|.+.+++..+
T Consensus 419 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 419 GPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDP-RSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp HHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 1233445566666 888889998888877652 4567788888888888999888888887653
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.90 E-value=7.6e-20 Score=178.74 Aligned_cols=358 Identities=10% Similarity=-0.029 Sum_probs=270.7
Q ss_pred hhcCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHH
Q 038748 76 FSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAI 155 (482)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 155 (482)
...|+++.|++.|+.+.. ..+.+..+|..+...+...|++++|...|+.+ ...+.. ....+..+...+....|.
T Consensus 70 ~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~a~ 143 (537)
T 3fp2_A 70 ISTGDLEKVIEFTTKALE--IKPDHSKALLRRASANESLGNFTDAMFDLSVL-SLNGDF---DGASIEPMLERNLNKQAM 143 (537)
T ss_dssp HHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH-C--------------CHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHHcCCHHHHHHHHHHH-hcCCCC---ChHHHHHHHHHHHHHHHH
Confidence 557999999999998877 44567899999999999999999999999744 332211 122344556666678888
Q ss_pred HHHHHHHhc------CCCCCHhh------------------------------HHHHHHHHHh--------cCChHhHHH
Q 038748 156 TTFDVMEQY------GCKHDVFA------------------------------LNSLLSAICR--------DGKTIDAWQ 191 (482)
Q Consensus 156 ~~~~~~~~~------~~~~~~~~------------------------------~~~ll~~~~~--------~g~~~~a~~ 191 (482)
..++.+... ...|+... ...+...+.. .|++++|..
T Consensus 144 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~ 223 (537)
T 3fp2_A 144 KVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTD 223 (537)
T ss_dssp HHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 888888553 11122211 1222222211 247889999
Q ss_pred HHHHhhCCCCCCHH-------HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHH
Q 038748 192 FLRVVDGRIKPDND-------TYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNS 264 (482)
Q Consensus 192 ~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~ 264 (482)
+|+.+....+.+.. ++..+...+...|++++|...|++.... .|+ ..++..+...+... |++++|++.
T Consensus 224 ~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~---~~~-~~~~~~l~~~~~~~-~~~~~A~~~ 298 (537)
T 3fp2_A 224 MYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL---HPT-PNSYIFLALTLADK-ENSQEFFKF 298 (537)
T ss_dssp HHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCC-HHHHHHHHHHTCCS-SCCHHHHHH
T ss_pred HHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc---CCC-chHHHHHHHHHHHh-cCHHHHHHH
Confidence 99997765555543 5677778888999999999999999854 675 77888888888888 999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 038748 265 LKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGA 344 (482)
Q Consensus 265 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 344 (482)
++++.+.. +.+..++..+...+...|++++|...++.+++.. +.+...+..+...|...|++++|...++++.+...
T Consensus 299 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 375 (537)
T 3fp2_A 299 FQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN--PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFP 375 (537)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99998864 3467789999999999999999999999997332 33567889999999999999999999999988632
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCc-----cChhhHHHHHHHHhcC----------CChHHHHHHHHHH
Q 038748 345 FPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENV-----LNHENCRAAVRVYMDS----------DDPYVAIKFWKYM 409 (482)
Q Consensus 345 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~~li~~~~~~----------~~~~~a~~~~~~m 409 (482)
.+...+..+...+...|++++|...|+++.+.... .....+.....++... |++++|.+.|+.+
T Consensus 376 -~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 454 (537)
T 3fp2_A 376 -TLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKA 454 (537)
T ss_dssp -TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHH
T ss_pred -CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHH
Confidence 35678888999999999999999999998775321 1112234445667777 9999999999999
Q ss_pred HHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 038748 410 IENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449 (482)
Q Consensus 410 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 449 (482)
.+.. +.+...+..+...|...|++++|.+.|++..+...
T Consensus 455 ~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 493 (537)
T 3fp2_A 455 CELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILAR 493 (537)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 9864 24557889999999999999999999999987753
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.89 E-value=2.8e-19 Score=164.98 Aligned_cols=335 Identities=11% Similarity=0.039 Sum_probs=205.9
Q ss_pred CHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHH
Q 038748 100 SPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSA 179 (482)
Q Consensus 100 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 179 (482)
|+..+..+...+...|++++|+..|+++.+..+.+..++..+..++...|++++|...|+.+.+... .+...+..+..+
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKM-DFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CcchHHHHHHHH
Confidence 3456677777777888888888888888777777777777788888888888888888887776542 255667777777
Q ss_pred HHhcCChHhHHHHHHHhhCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCC
Q 038748 180 ICRDGKTIDAWQFLRVVDGRIK---PDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD 256 (482)
Q Consensus 180 ~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 256 (482)
+...|++++|...|+......+ .+...+..+...+. ...+..+...+... |
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------------------------~~~~~~~a~~~~~~-~ 134 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-------------------------MQRLRSQALDAFDG-A 134 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHT-T
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHc-c
Confidence 7777777777777777654333 34444443311000 00111113334444 5
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 038748 257 GIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLL 336 (482)
Q Consensus 257 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 336 (482)
++++|++.++++.+.. +.+...+..+...+...|++++|...++.+++. .+.+..++..+...|...|++++|...|
T Consensus 135 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~ 211 (359)
T 3ieg_A 135 DYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKL--KSDNTEAFYKISTLYYQLGDHELSLSEV 211 (359)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CSCCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 5555555555554432 223444555555555555555555555555421 1234455555555555556666666665
Q ss_pred HHHHHCCCCCCHhhH------------HHHHHHHHhcCCHHHHHHHHHHHHhCCCccCh----hhHHHHHHHHhcCCChH
Q 038748 337 DEMVYNGAFPDIQTY------------NILFEFLVKGRKLWEASGLFNEMVKNENVLNH----ENCRAAVRVYMDSDDPY 400 (482)
Q Consensus 337 ~~m~~~g~~p~~~~~------------~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~ 400 (482)
++..+.... +...+ ..+...+...|++++|...++++.+.... +. ..+..+..+|...|+++
T Consensus 212 ~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~ 289 (359)
T 3ieg_A 212 RECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPV 289 (359)
T ss_dssp HHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHH
Confidence 555543211 11111 12355677888888888888888775432 22 22445677888888888
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcc
Q 038748 401 VAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARK 468 (482)
Q Consensus 401 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 468 (482)
+|.+.++...+.. +.+..+|..+...|...|++++|...|+++.+... -+...+..+..+....++
T Consensus 290 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~~~~~~ 355 (359)
T 3ieg_A 290 EAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNE-NDQQIREGLEKAQRLLKQ 355 (359)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHHHH
Confidence 8888888888753 23557788888888888888888888888886652 245566666666555443
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.89 E-value=6.5e-19 Score=162.56 Aligned_cols=312 Identities=9% Similarity=0.012 Sum_probs=232.9
Q ss_pred HHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 038748 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGW 214 (482)
Q Consensus 135 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 214 (482)
...+..+...+...|++++|...|+.+.+... .+..++..+..++...|++++|...|+.+....+.+...+..+..++
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 34566677777777777777777777776542 35666777777777777777777777775544445667777777777
Q ss_pred HhcCCHHHHHHHHHHhHHhcCCCC---CChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 038748 215 EKERDVANAKKTFGEMVIEVGWDP---DNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQ 291 (482)
Q Consensus 215 ~~~~~~~~a~~~~~~~~~~~~~~p---~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 291 (482)
...|++++|...|++.. ...| ++...+..+..... ...+..+...+...|
T Consensus 82 ~~~~~~~~A~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~------------------------~~~~~~~a~~~~~~~ 134 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVL---KSNPSEQEEKEAESQLVKADE------------------------MQRLRSQALDAFDGA 134 (359)
T ss_dssp HHHTCHHHHHHHHHHHH---TSCCCHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHTT
T ss_pred HHcCChHHHHHHHHHHH---hcCCcccChHHHHHHHHHHHH------------------------HHHHHHHHHHHHHcc
Confidence 77777777777777775 3344 33322222211110 112334467888999
Q ss_pred ChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 038748 292 NLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLF 371 (482)
Q Consensus 292 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 371 (482)
++++|.++++.+.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...+
T Consensus 135 ~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~ 211 (359)
T 3ieg_A 135 DYTAAITFLDKILEVC--VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEV 211 (359)
T ss_dssp CHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999997332 4567889999999999999999999999999864 336788899999999999999999999
Q ss_pred HHHHhCCCccChhhHH------------HHHHHHhcCCChHHHHHHHHHHHHcCCCCCh-----hhHHHHHHHHHhcCCh
Q 038748 372 NEMVKNENVLNHENCR------------AAVRVYMDSDDPYVAIKFWKYMIENHCSDLS-----ETGNLLVAGLCDMHML 434 (482)
Q Consensus 372 ~~~~~~~~~~~~~~~~------------~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-----~~~~~li~~~~~~g~~ 434 (482)
+...+.... +...+. .+...+.+.|++++|.+.++.+.+.. |+. ..+..+...+...|++
T Consensus 212 ~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~ 288 (359)
T 3ieg_A 212 RECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKP 288 (359)
T ss_dssp HHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHhhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCH
Confidence 999875432 223222 23667899999999999999999854 332 2345577889999999
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHhh
Q 038748 435 PEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKCKA 481 (482)
Q Consensus 435 ~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 481 (482)
++|...+++..+.. +.+...+..+..++.+.|++++|.+.+++..+
T Consensus 289 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 334 (359)
T 3ieg_A 289 VEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE 334 (359)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999998875 34778999999999999999999999998764
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.87 E-value=1.3e-18 Score=158.53 Aligned_cols=290 Identities=7% Similarity=-0.052 Sum_probs=186.0
Q ss_pred CCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHH
Q 038748 96 NDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNS 175 (482)
Q Consensus 96 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 175 (482)
..+.+...+..+...+...|++++|.++|+++.+..+.+...+..++.++...|++++|..+++.+.+... .+...+..
T Consensus 17 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~ 95 (330)
T 3hym_B 17 GLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYP-SNPVSWFA 95 (330)
T ss_dssp ---CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTHHHHH
T ss_pred hchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHH
Confidence 34456667777777888888888888888888877776666777777788888888888888888877542 35666777
Q ss_pred HHHHHHhcC-ChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHcc
Q 038748 176 LLSAICRDG-KTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG 254 (482)
Q Consensus 176 ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 254 (482)
+...+...| ++++|.+.|+......+.+...|..+..++...|++++|...|++.... .|++...+..+...+...
T Consensus 96 l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~l~~~~~~~ 172 (330)
T 3hym_B 96 VGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL---MKGCHLPMLYIGLEYGLT 172 (330)
T ss_dssp HHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---TTTCSHHHHHHHHHHHHT
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---ccccHHHHHHHHHHHHHH
Confidence 777777777 7788888777766555556677777777777788888888777777643 454555666666666666
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccC-------CCCCHHHHHHHHHHHHhcC
Q 038748 255 CDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIG-------FRPDTHMYNMMISLYCYSN 327 (482)
Q Consensus 255 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-------~~~~~~~~~~li~~~~~~~ 327 (482)
|++++|.+.+++..+.. +.+...+..+...+...|++++|...++.+.+... .+....++..+...|...|
T Consensus 173 -~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 250 (330)
T 3hym_B 173 -NNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLK 250 (330)
T ss_dssp -TCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTT
T ss_pred -hhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhc
Confidence 77777777777766543 23455666666666666666666666666542210 0222445555666666666
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHH
Q 038748 328 ETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVY 393 (482)
Q Consensus 328 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 393 (482)
++++|...|++..+... .+...+..+...+...|++++|...|++..+.... +...+..+..++
T Consensus 251 ~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~ 314 (330)
T 3hym_B 251 KYAEALDYHRQALVLIP-QNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRD-DTFSVTMLGHCI 314 (330)
T ss_dssp CHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSC-CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCc-cchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCC-chHHHHHHHHHH
Confidence 66666666666555421 13445555555555566666666666555543221 334444444444
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.85 E-value=1.4e-18 Score=158.42 Aligned_cols=285 Identities=9% Similarity=-0.044 Sum_probs=140.0
Q ss_pred CHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHH
Q 038748 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEG 213 (482)
Q Consensus 134 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 213 (482)
+...+..+...+...|++++|.++|+.+.+... .+...+..++.++...|++++|..+++.+....+.+..++..+...
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 99 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDP-FHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCY 99 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence 334455555555555555555555555554432 2333444445555555555555555555443333444555555555
Q ss_pred HHhcC-CHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 038748 214 WEKER-DVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQN 292 (482)
Q Consensus 214 ~~~~~-~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 292 (482)
+...| ++++|...|++.. ...|++..++..+...+... |++++|++.+++..+.. +.+...+..+...+...|+
T Consensus 100 ~~~~~~~~~~A~~~~~~a~---~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 100 YLMVGHKNEHARRYLSKAT---TLEKTYGPAWIAYGHSFAVE-SEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHSCSCHHHHHHHHHHHH---TTCTTCTHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTC
T ss_pred HHHhhhhHHHHHHHHHHHH---HhCCccHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhh
Confidence 55555 5555555555554 23444444555555555555 55555555555544432 1122333334444444444
Q ss_pred hhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 038748 293 LRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFN 372 (482)
Q Consensus 293 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 372 (482)
+ ++|...+++..+... .+...+..+...+...|++++|...++
T Consensus 175 ~------------------------------------~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~ 217 (330)
T 3hym_B 175 S------------------------------------KLAERFFSQALSIAP-EDPFVMHEVGVVAFQNGEWKTAEKWFL 217 (330)
T ss_dssp H------------------------------------HHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred H------------------------------------HHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcccHHHHHHHHH
Confidence 4 444444444444321 133444444445555555555555555
Q ss_pred HHHhCC--------CccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 038748 373 EMVKNE--------NVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGM 444 (482)
Q Consensus 373 ~~~~~~--------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 444 (482)
++.+.. ...+..++..+..+|...|++++|.+.++...+.. +.+...|..+...|...|++++|.+.|++.
T Consensus 218 ~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 296 (330)
T 3hym_B 218 DALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTA 296 (330)
T ss_dssp HHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTT
T ss_pred HHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 444321 01223455555555666666666666666555432 123345555556666666666666666655
Q ss_pred HHcCCCCCHHHHHHHHHHH
Q 038748 445 AEKGIQVTPFALSKLKQIL 463 (482)
Q Consensus 445 ~~~~~~~~~~~~~~l~~~~ 463 (482)
.+.. +.+...+..+..++
T Consensus 297 l~~~-p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 297 LGLR-RDDTFSVTMLGHCI 314 (330)
T ss_dssp TTTC-SCCHHHHHHHHHHH
T ss_pred HccC-CCchHHHHHHHHHH
Confidence 5433 12344555555544
No 17
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.84 E-value=3e-19 Score=165.63 Aligned_cols=265 Identities=10% Similarity=-0.029 Sum_probs=126.7
Q ss_pred hhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHH
Q 038748 171 FALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLIT 250 (482)
Q Consensus 171 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~ 250 (482)
..+..+...+...|++++|...|+.+....+.+..++..+..+|...|++++|...|+++... .|++..++..+...
T Consensus 65 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~l~~~ 141 (368)
T 1fch_A 65 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLEL---KPDNQTALMALAVS 141 (368)
T ss_dssp SSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhc---CCCCHHHHHHHHHH
Confidence 334455555555555555555555544333445555555555555555555555555555432 34445555555555
Q ss_pred HHccCCChHHHHHHHHHHHHcCCCCCHHHHHH---------------HHHHHHhcCChhHHHHHHHHhhcccCCCCCHHH
Q 038748 251 LLKGCDGIYETVNSLKRMMERGCNPGMTFFKL---------------AFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHM 315 (482)
Q Consensus 251 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~---------------li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 315 (482)
+... |++++|++.++++...... +...+.. .+..+...|++++|...+..+++.....++..+
T Consensus 142 ~~~~-g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~ 219 (368)
T 1fch_A 142 FTNE-SLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDV 219 (368)
T ss_dssp HHHT-TCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHH
T ss_pred HHHc-CCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHH
Confidence 5555 5555555555555543211 1111100 122222455555555555555422111113445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhc
Q 038748 316 YNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMD 395 (482)
Q Consensus 316 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 395 (482)
+..+...|...|++++|+..|+++.+.. +.+...+..+...+...|++++|...|+++.+... .+...+..+..+|.+
T Consensus 220 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~ 297 (368)
T 1fch_A 220 QCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP-GYIRSRYNLGISCIN 297 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHH
Confidence 5555555555555555555555555431 11334455555555555555555555555544321 133445555555555
Q ss_pred CCChHHHHHHHHHHHHcCCCC----------ChhhHHHHHHHHHhcCChhHHHHHHH
Q 038748 396 SDDPYVAIKFWKYMIENHCSD----------LSETGNLLVAGLCDMHMLPEAVKYAK 442 (482)
Q Consensus 396 ~~~~~~a~~~~~~m~~~~~~p----------~~~~~~~li~~~~~~g~~~~A~~~~~ 442 (482)
.|++++|.+.|+.+.+..... ...+|..+..+|...|++++|..+++
T Consensus 298 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 298 LGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp HTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 555555555555544321000 12445555555555555555555443
No 18
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.82 E-value=3.7e-15 Score=143.52 Aligned_cols=340 Identities=11% Similarity=-0.026 Sum_probs=242.3
Q ss_pred cCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhh----CCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh----hC
Q 038748 78 YSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGK----NCLFDAMWDAIKSMKKENVLSLATFASVFSSYVV----AD 149 (482)
Q Consensus 78 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~----~~ 149 (482)
.++.+.|+..|...... .++..+..+...|.. .+++++|.+.|++..+.+ +...+..|...|.. .+
T Consensus 56 ~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~ 129 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQ----GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG--LPQAQQNLGVMYHEGNGVKV 129 (490)
T ss_dssp CCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCC
T ss_pred CcCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCC
Confidence 56778888888876653 356777777777777 778888888888877765 45566667777776 67
Q ss_pred ChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHh----cCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHH
Q 038748 150 RVKDAITTFDVMEQYGCKHDVFALNSLLSAICR----DGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEK----ERDVA 221 (482)
Q Consensus 150 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~ 221 (482)
++++|...|+...+.| +...+..|...|.. .++.++|.++|+..... .+...+..+...|.. .++++
T Consensus 130 ~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~ 204 (490)
T 2xm6_A 130 DKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDA 204 (490)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHH
Confidence 8888888888877754 45666777777776 67788888888774331 367777777777777 78888
Q ss_pred HHHHHHHHhHHhcCCCCCChhhHHHHHHHHHc----cCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCh
Q 038748 222 NAKKTFGEMVIEVGWDPDNVPAYDSYLITLLK----GCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLT----GQNL 293 (482)
Q Consensus 222 ~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~----~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~ 293 (482)
+|..+|++.... + +..++..+...+.. . +++++|.++|++..+.| +...+..+...+.. .++.
T Consensus 205 ~A~~~~~~a~~~-~----~~~a~~~lg~~y~~g~g~~-~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~ 275 (490)
T 2xm6_A 205 ISAQWYRKSATS-G----DELGQLHLADMYYFGIGVT-QDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEP 275 (490)
T ss_dssp HHHHHHHHHHHT-T----CHHHHHHHHHHHHHTSSSC-CCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCH
T ss_pred HHHHHHHHHHHC-C----CHHHHHHHHHHHHcCCCCC-CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCH
Confidence 888888877642 2 34566666666665 4 77888888888877654 34555666666666 7788
Q ss_pred hHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC---CHH
Q 038748 294 RGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYS-----NETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGR---KLW 365 (482)
Q Consensus 294 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g---~~~ 365 (482)
++|.+.|+... +.+ +...+..+...|... +++++|+..|++..+.| +...+..+...|...| +.+
T Consensus 276 ~~A~~~~~~a~-~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~ 348 (490)
T 2xm6_A 276 LKALEWYRKSA-EQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHK 348 (490)
T ss_dssp HHHHHHHHHHH-TTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHH
T ss_pred HHHHHHHHHHH-HcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHH
Confidence 88888888875 332 455666677777766 78888888888877764 3455666666666655 677
Q ss_pred HHHHHHHHHHhCCCccChhhHHHHHHHHhc----CCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCChhHH
Q 038748 366 EASGLFNEMVKNENVLNHENCRAAVRVYMD----SDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCD----MHMLPEA 437 (482)
Q Consensus 366 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A 437 (482)
+|.++|++..+.+ +...+..+...|.. .+++++|.+.|+...+.| +...+..|...|.. .+++++|
T Consensus 349 ~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A 422 (490)
T 2xm6_A 349 KAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQA 422 (490)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 8888888887763 45667777777777 678888888888877765 34566677777776 6788888
Q ss_pred HHHHHHHHHcCCC
Q 038748 438 VKYAKGMAEKGIQ 450 (482)
Q Consensus 438 ~~~~~~m~~~~~~ 450 (482)
..+|++..+.+..
T Consensus 423 ~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 423 WAWFDTASTNDMN 435 (490)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHCCCC
Confidence 8888888777643
No 19
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.82 E-value=6e-18 Score=156.80 Aligned_cols=303 Identities=10% Similarity=-0.107 Sum_probs=166.0
Q ss_pred CCchhHhH-HhhhhhcCCCCCC--CHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHH
Q 038748 79 SHPGPAVK-FFRWSAYQLNDKH--SPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAI 155 (482)
Q Consensus 79 ~~~~~a~~-~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 155 (482)
++++.|+. .|+.........| +...+..+...+...|++++|...|+++.+..+.+..++..+..++...|++++|.
T Consensus 39 ~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 118 (368)
T 1fch_A 39 SDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAI 118 (368)
T ss_dssp -------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHH
Confidence 45555555 5553332111111 34455666666666666666666666666665556666666666666666666666
Q ss_pred HHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcC
Q 038748 156 TTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVG 235 (482)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 235 (482)
..|+.+.+... .+..++..+..++...|++++|...++.+....+.+...+..+... .. .
T Consensus 119 ~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~-------~~------------~ 178 (368)
T 1fch_A 119 SALRRCLELKP-DNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEG-------AG------------G 178 (368)
T ss_dssp HHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------------------
T ss_pred HHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH-------hh------------h
Confidence 66666665432 2455555566666666666666666655433222222222111000 00 0
Q ss_pred CCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHH
Q 038748 236 WDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNP-GMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTH 314 (482)
Q Consensus 236 ~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 314 (482)
..+. ..+. .+..+... |++++|+..|+++.+..... +..++..+...+...|++++|...++.+++.. +.+..
T Consensus 179 ~~~~--~~~~-~~~~~~~~-~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~ 252 (368)
T 1fch_A 179 AGLG--PSKR-ILGSLLSD-SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR--PNDYL 252 (368)
T ss_dssp ---------C-TTHHHHHH-HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHH
T ss_pred hccc--HHHH-HHHHHhhc-ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCCHH
Confidence 0000 0000 12223344 67777777777766643211 35666667777777777777777777765221 23456
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcc----------Chh
Q 038748 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVL----------NHE 384 (482)
Q Consensus 315 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~----------~~~ 384 (482)
++..+...|...|++++|+..|+++.+.. +.+...+..+...+.+.|++++|...|+++.+..... ...
T Consensus 253 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 331 (368)
T 1fch_A 253 LWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSEN 331 (368)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhH
Confidence 67777777777777777777777776642 2245666777777777777777777777766532111 146
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHH
Q 038748 385 NCRAAVRVYMDSDDPYVAIKFWKY 408 (482)
Q Consensus 385 ~~~~li~~~~~~~~~~~a~~~~~~ 408 (482)
+|..+..+|...|++++|..+++.
T Consensus 332 ~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 332 IWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred HHHHHHHHHHHhCChHhHHHhHHH
Confidence 677777777777777777777654
No 20
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.82 E-value=7.4e-16 Score=149.98 Aligned_cols=406 Identities=10% Similarity=0.043 Sum_probs=291.9
Q ss_pred CHHHHHHHHH-hhcCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 038748 66 SQETVEQVLK-FSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSS 144 (482)
Q Consensus 66 ~~~~~~~ll~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 144 (482)
+......++. ...|+.+.|..+|+.+.. ..+.+...|..++..+.+.|++++|..+|+++.... |+...|...+..
T Consensus 12 ~~~~w~~l~~~~~~~~~~~a~~~~e~al~--~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~-p~~~lw~~~~~~ 88 (530)
T 2ooe_A 12 DLDAWSILIREAQNQPIDKARKTYERLVA--QFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV-LHIDLWKCYLSY 88 (530)
T ss_dssp CHHHHHHHHHHHHSSCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC-CCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CChHHHHHHHHH
Confidence 4445555555 346899999999999887 567788899999999999999999999999999886 477778777754
Q ss_pred H-HhhCChhhHHH----HHHHHHhc-CCCC-CHhhHHHHHHHHHh---------cCChHhHHHHHHHhhCCCCCC--HHH
Q 038748 145 Y-VVADRVKDAIT----TFDVMEQY-GCKH-DVFALNSLLSAICR---------DGKTIDAWQFLRVVDGRIKPD--NDT 206 (482)
Q Consensus 145 ~-~~~~~~~~a~~----~~~~~~~~-~~~~-~~~~~~~ll~~~~~---------~g~~~~a~~~~~~~~~~~~~~--~~~ 206 (482)
. ...|+++.|.+ +|+..... |..| +...|...+..... .|+++.|..+|+.... .+.+ ...
T Consensus 89 ~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~P~~~~~~~ 167 (530)
T 2ooe_A 89 VRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-NPMINIEQL 167 (530)
T ss_dssp HHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-SCCTTHHHH
T ss_pred HHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-chhhhHHHH
Confidence 3 34588887766 77776553 5444 46678777776654 6889999999999765 2222 234
Q ss_pred HHHHHHHH-------------HhcCCHHHHHHHHHHhHH---hcC-----CCCCC-------hhhHHHHHHHHHccC---
Q 038748 207 YAILLEGW-------------EKERDVANAKKTFGEMVI---EVG-----WDPDN-------VPAYDSYLITLLKGC--- 255 (482)
Q Consensus 207 ~~~l~~~~-------------~~~~~~~~a~~~~~~~~~---~~~-----~~p~~-------~~~~~~l~~~~~~~~--- 255 (482)
|....... .+.++++.|..++..+.. ... +.|.. ...|...+.......
T Consensus 168 ~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~ 247 (530)
T 2ooe_A 168 WRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRT 247 (530)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccC
Confidence 43332211 134567778777765321 011 23321 134444443222210
Q ss_pred CCh----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-------cCChh-------HHHHHHHHhhcccCCCCCHHHHH
Q 038748 256 DGI----YETVNSLKRMMERGCNPGMTFFKLAFEECLT-------GQNLR-------GAEFIWGAMVGRIGFRPDTHMYN 317 (482)
Q Consensus 256 ~~~----~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~a~~~~~~~~~~~~~~~~~~~~~ 317 (482)
++. ..+..+|++.... .+-+...|......+.+ .|+++ +|..+|++.+ ..-.+.+...|.
T Consensus 248 ~~~~~~~~~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al-~~~~p~~~~l~~ 325 (530)
T 2ooe_A 248 EDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAI-STLLKKNMLLYF 325 (530)
T ss_dssp SCSHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHT-TTTCSSCHHHHH
T ss_pred CcchhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHH-HHhCcccHHHHH
Confidence 222 3677888888775 24467778888877775 79987 8999999987 211234588899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHH-Hh
Q 038748 318 MMISLYCYSNETGAAMKLLDEMVYNGAFPDI--QTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRV-YM 394 (482)
Q Consensus 318 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~ 394 (482)
.++..+.+.|++++|..+|+++.+. .|+. ..|...+..+.+.|++++|.++|++..+.... +...|...... +.
T Consensus 326 ~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~~~ 402 (530)
T 2ooe_A 326 AYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYY 402 (530)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHHHHHHH
Confidence 9999999999999999999999985 4542 47888888888999999999999999886322 33333332222 33
Q ss_pred cCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CC--CHHHHHHHHHHHHHhccHHH
Q 038748 395 DSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI-QV--TPFALSKLKQILIKARKEAV 471 (482)
Q Consensus 395 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~--~~~~~~~l~~~~~~~g~~~~ 471 (482)
..|++++|.++|+...+.. +.+...|..++..+.+.|+.++|..+|++....+. .| ....|...+....+.|+.+.
T Consensus 403 ~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~ 481 (530)
T 2ooe_A 403 CSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLAS 481 (530)
T ss_dssp HTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHH
T ss_pred HcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 6899999999999998753 23568899999999999999999999999988742 23 24578888888888999999
Q ss_pred HHHHHHHHhh
Q 038748 472 YEELLKKCKA 481 (482)
Q Consensus 472 a~~~~~~m~~ 481 (482)
+..+.+++.+
T Consensus 482 ~~~~~~r~~~ 491 (530)
T 2ooe_A 482 ILKVEKRRFT 491 (530)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988764
No 21
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.82 E-value=1.7e-15 Score=145.85 Aligned_cols=364 Identities=10% Similarity=0.027 Sum_probs=298.7
Q ss_pred hhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhh----CCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh----hCChhh
Q 038748 82 GPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGK----NCLFDAMWDAIKSMKKENVLSLATFASVFSSYVV----ADRVKD 153 (482)
Q Consensus 82 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~ 153 (482)
..+++.+..... ..++.++..+...|.. .+++++|+..|+...+.+ +...+..|...|.. .+++++
T Consensus 24 ~~~~~~~~~~a~----~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~ 97 (490)
T 2xm6_A 24 NVNLEQLKQKAE----SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG--YTPAEYVLGLRYMNGEGVPQDYAQ 97 (490)
T ss_dssp -CCHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred hHHHHHHHHHHH----CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCHHH
Confidence 334555554433 2577888888888888 899999999999998875 56678888899988 899999
Q ss_pred HHHHHHHHHhcCCCCCHhhHHHHHHHHHh----cCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHH
Q 038748 154 AITTFDVMEQYGCKHDVFALNSLLSAICR----DGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEK----ERDVANAKK 225 (482)
Q Consensus 154 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~ 225 (482)
|.+.|++..+.| +...+..|...|.. .+++++|..+|+.... .-+...+..+...|.. .+++++|..
T Consensus 98 A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~--~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 172 (490)
T 2xm6_A 98 AVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAE--QGRDSGQQSMGDAYFEGDGVTRDYVMARE 172 (490)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 999999998865 66777888888888 7899999999998543 2367888888888887 889999999
Q ss_pred HHHHhHHhcCCCCCChhhHHHHHHHHHc----cCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChhHHH
Q 038748 226 TFGEMVIEVGWDPDNVPAYDSYLITLLK----GCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLT----GQNLRGAE 297 (482)
Q Consensus 226 ~~~~~~~~~~~~p~~~~~~~~l~~~~~~----~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~ 297 (482)
+|++.... .+..++..+...+.. . +++++|++.|++..+.| +...+..+...|.. .+++++|.
T Consensus 173 ~~~~a~~~-----~~~~a~~~Lg~~y~~g~g~~-~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~ 243 (490)
T 2xm6_A 173 WYSKAAEQ-----GNVWSCNQLGYMYSRGLGVE-RNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSR 243 (490)
T ss_dssp HHHHHHHT-----TCHHHHHHHHHHHHHTSSSC-CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHC-----CCHHHHHHHHHHHhcCCCCC-cCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 99998753 256688888888887 6 99999999999998876 56677778888876 88999999
Q ss_pred HHHHHhhcccCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc-----CCHHHHH
Q 038748 298 FIWGAMVGRIGFRPDTHMYNMMISLYCY----SNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKG-----RKLWEAS 368 (482)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-----g~~~~a~ 368 (482)
++|+... +.+ +...+..+...|.. .++.++|+..|++..+.| +...+..+...|... ++.++|.
T Consensus 244 ~~~~~a~-~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~ 316 (490)
T 2xm6_A 244 VLFSQSA-EQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAI 316 (490)
T ss_dssp HHHHHHH-TTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHH
T ss_pred HHHHHHH-HCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHH
Confidence 9999986 433 56677777778877 899999999999998764 455677777778777 8999999
Q ss_pred HHHHHHHhCCCccChhhHHHHHHHHhcCC---ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCChhHHHHHH
Q 038748 369 GLFNEMVKNENVLNHENCRAAVRVYMDSD---DPYVAIKFWKYMIENHCSDLSETGNLLVAGLCD----MHMLPEAVKYA 441 (482)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~ 441 (482)
.+|++..+.+ +...+..+...|...| ++++|.+.|+...+.| +...+..+...|.. .+++++|..+|
T Consensus 317 ~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~ 390 (490)
T 2xm6_A 317 SWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWM 390 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 9999999875 4456777888887766 7899999999999864 45778888888888 89999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHH----hccHHHHHHHHHHHhh
Q 038748 442 KGMAEKGIQVTPFALSKLKQILIK----ARKEAVYEELLKKCKA 481 (482)
Q Consensus 442 ~~m~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~ 481 (482)
++..+.| ++..+..+...|.+ .++.++|.+++++..+
T Consensus 391 ~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 431 (490)
T 2xm6_A 391 RKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTAST 431 (490)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 9999876 57788888888888 8999999999988653
No 22
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.82 E-value=1.7e-18 Score=160.37 Aligned_cols=266 Identities=12% Similarity=0.011 Sum_probs=181.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 038748 203 DNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKL 282 (482)
Q Consensus 203 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 282 (482)
+...+..+...+.+.|++++|...|+++... .|++..++..+...+... |++++|++.|+++.+.. +.+..++..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~-p~~~~~~~~ 138 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQ---DPGDAEAWQFLGITQAEN-ENEQAAIVALQRCLELQ-PNNLKALMA 138 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhcC-CCCHHHHHH
Confidence 3444666666667777777777777766543 455666666666666666 77777777777666643 234566666
Q ss_pred HHHHHHhcCChhHHHHHHHHhhcccCCCCC-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHhh
Q 038748 283 AFEECLTGQNLRGAEFIWGAMVGRIGFRPD-----------THMYNMMISLYCYSNETGAAMKLLDEMVYNGAF-PDIQT 350 (482)
Q Consensus 283 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~~~~ 350 (482)
+..++...|++++|...|+++++. .|+ ...+..+...+...|++++|...|+++.+.... ++...
T Consensus 139 l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 215 (365)
T 4eqf_A 139 LAVSYTNTSHQQDACEALKNWIKQ---NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDL 215 (365)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHH
T ss_pred HHHHHHccccHHHHHHHHHHHHHh---CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHH
Confidence 667777777777777777766521 121 223344567778888888888888888775322 15677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 038748 351 YNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCD 430 (482)
Q Consensus 351 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 430 (482)
+..+...+...|++++|...|+++.+.... +..++..+..+|...|++++|.+.|+++.+.. +.+..+|..+..+|..
T Consensus 216 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 293 (365)
T 4eqf_A 216 QTGLGVLFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCIN 293 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHH
Confidence 888888888888888888888888775433 56788888888888999999999998888753 2335778888888889
Q ss_pred cCChhHHHHHHHHHHHcCCC-----------CCHHHHHHHHHHHHHhccHHHHHHHHHH
Q 038748 431 MHMLPEAVKYAKGMAEKGIQ-----------VTPFALSKLKQILIKARKEAVYEELLKK 478 (482)
Q Consensus 431 ~g~~~~A~~~~~~m~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 478 (482)
.|++++|...|+++.+.... .+..+|..+..++...|+.+.+..+.++
T Consensus 294 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 294 LGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999999888654311 1356788888899999999888877653
No 23
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.80 E-value=6.8e-18 Score=156.30 Aligned_cols=265 Identities=11% Similarity=0.020 Sum_probs=160.5
Q ss_pred HHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHH
Q 038748 173 LNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252 (482)
Q Consensus 173 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~ 252 (482)
+..+...+.+.|++++|..+|+.+....+.+..+|..+..+|...|++++|...|+++... .|++..++..+...+.
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~ 144 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLEL---QPNNLKALMALAVSYT 144 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHH
Confidence 3334444444444444444444433222334444444444444444444444444444321 3334444444444444
Q ss_pred ccCCChHHHHHHHHHHHHcCCC---------CCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHH
Q 038748 253 KGCDGIYETVNSLKRMMERGCN---------PGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLY 323 (482)
Q Consensus 253 ~~~~~~~~a~~~~~~m~~~~~~---------~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 323 (482)
.. |++++|++.|+++.+.... .....+..+...+...|++++|..+++++++...-..+..++..+...|
T Consensus 145 ~~-g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 223 (365)
T 4eqf_A 145 NT-SHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLF 223 (365)
T ss_dssp HT-TCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHH
T ss_pred cc-ccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHH
Confidence 44 4444444444444432100 0122334456777788888888888888874432222677888888888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHH
Q 038748 324 CYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAI 403 (482)
Q Consensus 324 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 403 (482)
...|++++|+..|++..+... .+..+|..+..+|...|++++|...|+++.+.... +..++..+..+|...|++++|.
T Consensus 224 ~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~ 301 (365)
T 4eqf_A 224 HLSGEFNRAIDAFNAALTVRP-EDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGAYREAV 301 (365)
T ss_dssp HHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCHHHHH
Confidence 888999999988888887532 35678888888888899999999999888875432 4677888888899999999999
Q ss_pred HHHHHHHHcCC---C--------CChhhHHHHHHHHHhcCChhHHHHHHHH
Q 038748 404 KFWKYMIENHC---S--------DLSETGNLLVAGLCDMHMLPEAVKYAKG 443 (482)
Q Consensus 404 ~~~~~m~~~~~---~--------p~~~~~~~li~~~~~~g~~~~A~~~~~~ 443 (482)
+.|+++.+... . .+...|..+..++...|+.+.+..+.++
T Consensus 302 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 302 SNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99988875321 0 1357889999999999999888877654
No 24
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.80 E-value=5.8e-20 Score=180.15 Aligned_cols=118 Identities=14% Similarity=0.087 Sum_probs=84.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHhhc--ccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHH
Q 038748 276 GMTFFKLAFEECLTGQNLRGAEFIWGAMVG--RIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNI 353 (482)
Q Consensus 276 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 353 (482)
-..||+++|++||+.|++++|.++|.+|.+ ..|+.||+.+||+||.+||+.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 356777777777777777777777766531 246677777777777777777777777777777777777777777777
Q ss_pred HHHHHHhcCC-HHHHHHHHHHHHhCCCccChhhHHHHHHHH
Q 038748 354 LFEFLVKGRK-LWEASGLFNEMVKNENVLNHENCRAAVRVY 393 (482)
Q Consensus 354 ll~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 393 (482)
+|.++++.|+ .++|.++|++|.+.|+.||..+|+.++..+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~ 246 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEE 246 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChh
Confidence 7777777776 356777777777777777777777766544
No 25
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.80 E-value=1.2e-17 Score=151.85 Aligned_cols=289 Identities=12% Similarity=0.147 Sum_probs=133.4
Q ss_pred HHHHHHHhhcCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhh
Q 038748 69 TVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVA 148 (482)
Q Consensus 69 ~~~~ll~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~ 148 (482)
....+|. ..|+.++|.++++.+. ++.+|..+..++.+.|++++|++.|.+. ++..+|..++.++...
T Consensus 8 a~~~ll~-~~~~ld~A~~fae~~~-------~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~ 74 (449)
T 1b89_A 8 AVQVLIE-HIGNLDRAYEFAERCN-------EPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTS 74 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHH-HccCHHHHHHHHHhCC-------ChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhC
Confidence 3344443 4578999999999762 2359999999999999999999999653 4666899999999999
Q ss_pred CChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038748 149 DRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFG 228 (482)
Q Consensus 149 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 228 (482)
|++++|+..++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|...|.
T Consensus 75 g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~ 146 (449)
T 1b89_A 75 GNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN------GPNNAHIQQVGDRCYDEKMYDAAKLLYN 146 (449)
T ss_dssp ------------------------------------CHHHHTTTTT------CC----------------CTTTHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc------CCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999988777764 4567889999999999999999988775 4777899999999999999999999998
Q ss_pred HhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccC
Q 038748 229 EMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIG 308 (482)
Q Consensus 229 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 308 (482)
.+ ..|..++.++.+. |++++|.+.++++ .+..+|..++.+|...|+++.|......+
T Consensus 147 ~a-----------~n~~~LA~~L~~L-g~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L----- 203 (449)
T 1b89_A 147 NV-----------SNFGRLASTLVHL-GEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI----- 203 (449)
T ss_dssp HT-----------TCHHHHHHHHHTT-TCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----
T ss_pred Hh-----------hhHHHHHHHHHHh-ccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----
Confidence 66 2789999999999 9999999999988 26899999999999999999996655443
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCcc-----
Q 038748 309 FRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKG--RKLWEASGLFNEMVKNENVL----- 381 (482)
Q Consensus 309 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~--g~~~~a~~~~~~~~~~~~~~----- 381 (482)
...+.-...++..|.+.|++++|..+++...... .-....|+-+.-+|++- ++..+.++.|.. +.+++|
T Consensus 204 -~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~ 279 (449)
T 1b89_A 204 -VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAA 279 (449)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHH
T ss_pred -HhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHH
Confidence 2334445578999999999999999999987653 34566777777667664 344444444432 223333
Q ss_pred -ChhhHHHHHHHHhcCCChHHHHHH
Q 038748 382 -NHENCRAAVRVYMDSDDPYVAIKF 405 (482)
Q Consensus 382 -~~~~~~~li~~~~~~~~~~~a~~~ 405 (482)
+...|..+...|...++++.|..+
T Consensus 280 ~~~~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 280 EQAHLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp HTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhchHHHHHHH
Confidence 567888999999999999988764
No 26
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.79 E-value=5.1e-17 Score=144.60 Aligned_cols=251 Identities=12% Similarity=0.048 Sum_probs=117.6
Q ss_pred HHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 038748 145 YVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAK 224 (482)
Q Consensus 145 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 224 (482)
....|+++.|+..++................+..+|...|+++.|...++. ..+|+..++..+...+...|+.++|.
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~~A~ 85 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRDAIV 85 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHHHHH
Confidence 344566666666555543322111122334445566666666655543322 23445555555566666666666666
Q ss_pred HHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 038748 225 KTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMV 304 (482)
Q Consensus 225 ~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 304 (482)
+.++++... +..|++...+..+...+... |++++|++.+++ +.+...+..++..+.+.|++++|.+.|+.+.
T Consensus 86 ~~l~~ll~~-~~~P~~~~~~~~la~~~~~~-g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 86 AELDREMSR-SVDVTNTTFLLMAASIYFYD-QNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQ 157 (291)
T ss_dssp HHHHHHHHS-CCCCSCHHHHHHHHHHHHHT-TCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhc-ccCCCCHHHHHHHHHHHHHC-CCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 666655532 34455555555555555555 666666655554 2344445555555555555555555555554
Q ss_pred cccCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcc
Q 038748 305 GRIGFRPDTHMY---NMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVL 381 (482)
Q Consensus 305 ~~~~~~~~~~~~---~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 381 (482)
+. .|+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|...|++..+....
T Consensus 158 ~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~- 232 (291)
T 3mkr_A 158 DQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG- 232 (291)
T ss_dssp HH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred hh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-
Confidence 21 2332111 11112222234455555555554443 1223444444444445555555555555544443221
Q ss_pred ChhhHHHHHHHHhcCCChHH-HHHHHHHHHH
Q 038748 382 NHENCRAAVRVYMDSDDPYV-AIKFWKYMIE 411 (482)
Q Consensus 382 ~~~~~~~li~~~~~~~~~~~-a~~~~~~m~~ 411 (482)
+..++..++..+...|+.++ +.++++++.+
T Consensus 233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 33344444444444444433 3344444443
No 27
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.79 E-value=1.7e-19 Score=176.87 Aligned_cols=136 Identities=9% Similarity=-0.022 Sum_probs=113.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHH
Q 038748 312 DTHMYNMMISLYCYSNETGAAMKLLDEMVY---NGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRA 388 (482)
Q Consensus 312 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 388 (482)
-..+||+||++||+.|++++|.++|++|.+ .|+.||..|||+||.+||+.|++++|.++|++|.+.|+.||..|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 456899999999999999999999988764 47889999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCh-HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 038748 389 AVRVYMDSDDP-YVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVT 452 (482)
Q Consensus 389 li~~~~~~~~~-~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 452 (482)
+|.++++.|+. ++|.++|++|.+.|+.||..+|++++.++.+. .+++..+++ ..++.|+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~ 265 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLP 265 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCC
Confidence 99999998874 78889999999999999999999888766553 455555555 3345544
No 28
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.79 E-value=3.4e-17 Score=148.97 Aligned_cols=279 Identities=9% Similarity=-0.110 Sum_probs=151.6
Q ss_pred CHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHH
Q 038748 100 SPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSA 179 (482)
Q Consensus 100 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 179 (482)
+...+..+...+...|++++|..+|+++.+..+.+..++..+..++...|++++|.+.|+.+.+... .+..++..+...
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~ 98 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVS 98 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-CCHHHHHHHHHH
Confidence 4455677777788888888888888888887777777788888888888888888888888777542 356667777777
Q ss_pred HHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHH-HH-HHHccCCC
Q 038748 180 ICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSY-LI-TLLKGCDG 257 (482)
Q Consensus 180 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l-~~-~~~~~~~~ 257 (482)
+...|++++|.+.++.+....+.+...+..+...+ |+.. ....+ .. .+... |+
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~-~~~~~~~~~~~~~~-~~ 153 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQPQYEQLGSVNLQAD-----------------------VDID-DLNVQSEDFFFAAP-NE 153 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------------------------------CCTTSH-HH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHH-----------------------HHHH-HHHHHHHhHHHHHc-cc
Confidence 77777777777777775433233333332220000 0000 00000 11 12233 44
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038748 258 IYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLD 337 (482)
Q Consensus 258 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 337 (482)
+++|.+.++++.+.. +.+...+..+...+...|++++|.+.+..+.+.. +.+..++..+...+...|++++|...|+
T Consensus 154 ~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 230 (327)
T 3cv0_A 154 YRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR--PDDAQLWNKLGATLANGNRPQEALDAYN 230 (327)
T ss_dssp HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455555554444432 1234444444555555555555555555543211 2234455555555555555555555555
Q ss_pred HHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcc-----------ChhhHHHHHHHHhcCCChHHHHHHH
Q 038748 338 EMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVL-----------NHENCRAAVRVYMDSDDPYVAIKFW 406 (482)
Q Consensus 338 ~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-----------~~~~~~~li~~~~~~~~~~~a~~~~ 406 (482)
++.+... .+...+..+...+...|++++|...++++.+..... +...+..+..++...|++++|..++
T Consensus 231 ~a~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 309 (327)
T 3cv0_A 231 RALDINP-GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTY 309 (327)
T ss_dssp HHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHT
T ss_pred HHHHcCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 5554321 134455555555555566666666555555432111 2445555566666666666666555
Q ss_pred HH
Q 038748 407 KY 408 (482)
Q Consensus 407 ~~ 408 (482)
+.
T Consensus 310 ~~ 311 (327)
T 3cv0_A 310 AQ 311 (327)
T ss_dssp TC
T ss_pred HH
Confidence 43
No 29
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.78 E-value=1.7e-14 Score=140.29 Aligned_cols=371 Identities=8% Similarity=0.015 Sum_probs=264.7
Q ss_pred CCHHHHHHHHH--hhcCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHH-hhCCCcHHHHH----HHHHHHhc-C--CCC
Q 038748 65 VSQETVEQVLK--FSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLL-GKNCLFDAMWD----AIKSMKKE-N--VLS 134 (482)
Q Consensus 65 ~~~~~~~~ll~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~-~~~~~~~~a~~----~~~~~~~~-~--~~~ 134 (482)
-+.......+. ...|+.+.|..+|+.+.. .. |+...|...+... ...|+.+.|.+ +|+..... | +.+
T Consensus 44 ~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~--~~-p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~ 120 (530)
T 2ooe_A 44 SSGRFWKLYIEAEIKAKNYDKVEKLFQRCLM--KV-LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMS 120 (530)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--TC-CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTC
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--cC-CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCccc
Confidence 34444444554 447899999999998876 22 5888888887644 45677777665 77776553 3 356
Q ss_pred HHHHHHHHHHHHh---------hCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHH-------------HhcCChHhHHHH
Q 038748 135 LATFASVFSSYVV---------ADRVKDAITTFDVMEQYGCKHDVFALNSLLSAI-------------CRDGKTIDAWQF 192 (482)
Q Consensus 135 ~~~~~~li~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-------------~~~g~~~~a~~~ 192 (482)
...|...+....+ .|+++.|..+|++..+.........|....... .+.++++.|..+
T Consensus 121 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~ 200 (530)
T 2ooe_A 121 YQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRV 200 (530)
T ss_dssp HHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHH
Confidence 7888888877655 789999999999998832111123343322211 124567777777
Q ss_pred HHHhh-------C---CCCCC--------HHHHHHHHHHHHhc----CCH----HHHHHHHHHhHHhcCCCCCChhhHHH
Q 038748 193 LRVVD-------G---RIKPD--------NDTYAILLEGWEKE----RDV----ANAKKTFGEMVIEVGWDPDNVPAYDS 246 (482)
Q Consensus 193 ~~~~~-------~---~~~~~--------~~~~~~l~~~~~~~----~~~----~~a~~~~~~~~~~~~~~p~~~~~~~~ 246 (482)
+..+. . .++|+ ...|...+...... ++. ..+..+|++.... .|.+...|..
T Consensus 201 ~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~---~p~~~~~w~~ 277 (530)
T 2ooe_A 201 AKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV---LGHHPDIWYE 277 (530)
T ss_dssp HHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH---HTTCHHHHHH
T ss_pred HHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh---CCCCHHHHHH
Confidence 76521 1 13444 24566555443322 232 3677889888754 6777888888
Q ss_pred HHHHHHc-------cCCChH-------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCC
Q 038748 247 YLITLLK-------GCDGIY-------ETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD 312 (482)
Q Consensus 247 l~~~~~~-------~~~~~~-------~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 312 (482)
....+.. . |+++ +|.++|++..+.-.+-+...+..++..+.+.|++++|..+|+.+++ +.|+
T Consensus 278 ~~~~~~~~~~~~~~~-g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~---~~p~ 353 (530)
T 2ooe_A 278 AAQYLEQSSKLLAEK-GDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA---IEDI 353 (530)
T ss_dssp HHHHHHHHHHHHHTT-TCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---SSSS
T ss_pred HHHHHHHhchhhhhc-cchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC---cccc
Confidence 8888775 5 8887 8999999988632344678889999999999999999999999973 3554
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH-HHhcCCHHHHHHHHHHHHhCCCccChhhHHHH
Q 038748 313 --THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEF-LVKGRKLWEASGLFNEMVKNENVLNHENCRAA 389 (482)
Q Consensus 313 --~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 389 (482)
...|..++..+.+.|++++|.++|++..+.... +...|...... +...|+.++|..+|+..++... -+...|..+
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p-~~~~~~~~~ 431 (530)
T 2ooe_A 354 DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG-DIPEYVLAY 431 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHT-TCHHHHHHH
T ss_pred CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCC-CCHHHHHHH
Confidence 258999999999999999999999999886321 22333222222 3368999999999999987542 257889999
Q ss_pred HHHHhcCCChHHHHHHHHHHHHcCC-CCC--hhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 038748 390 VRVYMDSDDPYVAIKFWKYMIENHC-SDL--SETGNLLVAGLCDMHMLPEAVKYAKGMAEK 447 (482)
Q Consensus 390 i~~~~~~~~~~~a~~~~~~m~~~~~-~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 447 (482)
+..+.+.|+.++|..+|+.....+. .|+ ...|...+......|+.+.+..+++++.+.
T Consensus 432 ~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 432 IDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999999998642 232 247888888888899999999999998765
No 30
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.78 E-value=9.7e-17 Score=145.92 Aligned_cols=276 Identities=16% Similarity=0.003 Sum_probs=154.5
Q ss_pred HHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 038748 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEK 216 (482)
Q Consensus 137 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 216 (482)
.+..+...+...|++++|..+|+.+.+... .+...+..+..++...|++++|.+.++.+....+.+..++..+...|..
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAAP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 101 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHH
Confidence 345555566666666666666666655432 2445555555666666666666666665443334455555666666666
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHH--HHHhcCChh
Q 038748 217 ERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFE--ECLTGQNLR 294 (482)
Q Consensus 217 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~--~~~~~g~~~ 294 (482)
.|++++|...++++... .|++...+..+.... |+......+.. .+...|+++
T Consensus 102 ~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~ 155 (327)
T 3cv0_A 102 EHNANAALASLRAWLLS---QPQYEQLGSVNLQAD-----------------------VDIDDLNVQSEDFFFAAPNEYR 155 (327)
T ss_dssp TTCHHHHHHHHHHHHHT---STTTTTC-------------------------------------------CCTTSHHHHH
T ss_pred cCCHHHHHHHHHHHHHh---CCccHHHHHHHhHHH-----------------------HHHHHHHHHHHhHHHHHcccHH
Confidence 66666666666655432 332222221111000 01111111112 255667777
Q ss_pred HHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 038748 295 GAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374 (482)
Q Consensus 295 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 374 (482)
+|.+.+..+.+.. +.+..++..+...|...|++++|...++++.+... .+...+..+...+...|++++|...++++
T Consensus 156 ~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 232 (327)
T 3cv0_A 156 ECRTLLHAALEMN--PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEALDAYNRA 232 (327)
T ss_dssp HHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7777777775221 33566677777777777777777777777766422 24556666667777777777777777776
Q ss_pred HhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCC-----------ChhhHHHHHHHHHhcCChhHHHHHHHH
Q 038748 375 VKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSD-----------LSETGNLLVAGLCDMHMLPEAVKYAKG 443 (482)
Q Consensus 375 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-----------~~~~~~~li~~~~~~g~~~~A~~~~~~ 443 (482)
.+.... +...+..+..+|...|++++|.+.++.+.+..... +...|..+..++...|++++|..++++
T Consensus 233 ~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 233 LDINPG-YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred HHcCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 664322 45566666667777777777777777666532111 245666666666667777766666653
No 31
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.77 E-value=7.9e-15 Score=140.70 Aligned_cols=365 Identities=13% Similarity=-0.007 Sum_probs=240.4
Q ss_pred CCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhc---------CCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhc----
Q 038748 98 KHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKE---------NVLSLATFASVFSSYVVADRVKDAITTFDVMEQY---- 164 (482)
Q Consensus 98 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---- 164 (482)
......||.+...+...|++++|++.|++..+. .+....+|+.+..+|...|++++|...+++..+.
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 344567899999999999999999999876542 2335678889999999999999999999877642
Q ss_pred -C-CC-CCHhhHHHHHHHHHhc--CChHhHHHHHHHhhCCCCCCHHHHHHHHHHH---HhcCCHHHHHHHHHHhHHhcCC
Q 038748 165 -G-CK-HDVFALNSLLSAICRD--GKTIDAWQFLRVVDGRIKPDNDTYAILLEGW---EKERDVANAKKTFGEMVIEVGW 236 (482)
Q Consensus 165 -~-~~-~~~~~~~~ll~~~~~~--g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~ 236 (482)
+ .. ....++..+..++... +++++|.+.|++.....+.+...+..+..++ ...++.++|++.+++... +
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~---l 204 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIR---L 204 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHH---H
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhh---c
Confidence 1 11 1345566555555543 5789999999986554455666666655553 445777888888888764 4
Q ss_pred CCCChhhHHHHHHHHHcc---CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCH
Q 038748 237 DPDNVPAYDSYLITLLKG---CDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDT 313 (482)
Q Consensus 237 ~p~~~~~~~~l~~~~~~~---~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 313 (482)
.|++..++..+...+... .+++++|.+.+++..... +.+...+..+...+...|++++|...+.+..+.. +-+.
T Consensus 205 ~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~ 281 (472)
T 4g1t_A 205 NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI--PNNA 281 (472)
T ss_dssp CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCH
T ss_pred CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC--CChH
Confidence 677776666665544432 167888999998887754 3456778888899999999999999999987332 3345
Q ss_pred HHHHHHHHHHHhc-------------------CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 038748 314 HMYNMMISLYCYS-------------------NETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374 (482)
Q Consensus 314 ~~~~~li~~~~~~-------------------~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 374 (482)
.++..+...|... +..+.|...+++..+... .+...+..+...+...|++++|...|++.
T Consensus 282 ~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~ka 360 (472)
T 4g1t_A 282 YLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAND-NLFRVCSILASLHALADQYEEAEYYFQKE 360 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCT-TTCCCHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCC-chhhhhhhHHHHHHHhccHHHHHHHHHHH
Confidence 5666665555321 235677777777776532 24566778888899999999999999998
Q ss_pred HhCCCccChh--hHHHHHH-HHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 038748 375 VKNENVLNHE--NCRAAVR-VYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQV 451 (482)
Q Consensus 375 ~~~~~~~~~~--~~~~li~-~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 451 (482)
.+....+... .+..+.. .+...|++++|+..|++..+ +.|+...... ....+.+++++..+.+ +.
T Consensus 361 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~--i~~~~~~~~~---------~~~~l~~~~~~~l~~~-p~ 428 (472)
T 4g1t_A 361 FSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK--INQKSREKEK---------MKDKLQKIAKMRLSKN-GA 428 (472)
T ss_dssp HHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH--SCCCCHHHHH---------HHHHHHHHHHHHHHHC-C-
T ss_pred HhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCcccHHHHH---------HHHHHHHHHHHHHHhC-CC
Confidence 8865443221 2222322 23577899999999998887 4455432222 2233455566555554 24
Q ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHhh
Q 038748 452 TPFALSKLKQILIKARKEAVYEELLKKCKA 481 (482)
Q Consensus 452 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 481 (482)
+..+|..+..++...|++++|++.+++..+
T Consensus 429 ~~~~~~~LG~~~~~~g~~~~A~~~y~kALe 458 (472)
T 4g1t_A 429 DSEALHVLAFLQELNEKMQQADEDSERGLE 458 (472)
T ss_dssp CTTHHHHHHHHHHHHHHCC-----------
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 567888888899999999999998887654
No 32
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.75 E-value=2e-17 Score=150.46 Aligned_cols=284 Identities=10% Similarity=0.006 Sum_probs=134.5
Q ss_pred hCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHH
Q 038748 113 KNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQF 192 (482)
Q Consensus 113 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 192 (482)
+.|++++|.++++++.. ..+|..++.++.+.|++++|++.|.+. +|..+|..++.++...|++++|..+
T Consensus 15 ~~~~ld~A~~fae~~~~-----~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~y 83 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNE-----PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKY 83 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCC-----hHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 56779999999999833 358999999999999999999999653 5777999999999999999999998
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcC
Q 038748 193 LRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERG 272 (482)
Q Consensus 193 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~ 272 (482)
++...+. .+++.+.+.++.+|.+.|+++++.++++ .| +..+|..+...+... |.+++|...|..+
T Consensus 84 l~~ark~-~~~~~i~~~Li~~Y~Klg~l~e~e~f~~--------~p-n~~a~~~IGd~~~~~-g~yeeA~~~Y~~a---- 148 (449)
T 1b89_A 84 LQMARKK-ARESYVETELIFALAKTNRLAELEEFIN--------GP-NNAHIQQVGDRCYDE-KMYDAAKLLYNNV---- 148 (449)
T ss_dssp --------------------------CHHHHTTTTT--------CC------------------CTTTHHHHHHHT----
T ss_pred HHHHHHh-CccchhHHHHHHHHHHhCCHHHHHHHHc--------CC-cHHHHHHHHHHHHHc-CCHHHHHHHHHHh----
Confidence 8876654 5568889999999999999999988774 24 456999999999999 9999999999976
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHH
Q 038748 273 CNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYN 352 (482)
Q Consensus 273 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 352 (482)
..|..++.++.+.|++++|.+.+..+. ++.+|..++.+|...|+++.|......+. ..+....
T Consensus 149 -----~n~~~LA~~L~~Lg~yq~AVea~~KA~-------~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~ 211 (449)
T 1b89_A 149 -----SNFGRLASTLVHLGEYQAAVDGARKAN-------STRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELE 211 (449)
T ss_dssp -----TCHHHHHHHHHTTTCHHHHHHHHHHHT-------CHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHH
T ss_pred -----hhHHHHHHHHHHhccHHHHHHHHHHcC-------CchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHH
Confidence 368999999999999999999999872 78999999999999999999966554422 3444455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHH-cCCCC------ChhhHHHHH
Q 038748 353 ILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIE-NHCSD------LSETGNLLV 425 (482)
Q Consensus 353 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~~~~p------~~~~~~~li 425 (482)
.++..|.+.|++++|..+++...... .-....|+.+.-+|++- ++++..+.++.... .+++| +...|.-+.
T Consensus 212 ~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~ 289 (449)
T 1b89_A 212 ELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELV 289 (449)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 78899999999999999999998765 34566777777777754 34444443333221 23333 357899999
Q ss_pred HHHHhcCChhHHHHHH
Q 038748 426 AGLCDMHMLPEAVKYA 441 (482)
Q Consensus 426 ~~~~~~g~~~~A~~~~ 441 (482)
..|...++++.|....
T Consensus 290 ~ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 290 FLYDKYEEYDNAIITM 305 (449)
T ss_dssp HHHHHTTCHHHHHHHH
T ss_pred HHHHhhchHHHHHHHH
Confidence 9999999999987743
No 33
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.74 E-value=1.4e-15 Score=135.22 Aligned_cols=275 Identities=16% Similarity=0.069 Sum_probs=214.6
Q ss_pred HHHHHhcCChHhHHHHHHHhhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHcc
Q 038748 177 LSAICRDGKTIDAWQFLRVVDGRIKPD--NDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG 254 (482)
Q Consensus 177 l~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 254 (482)
++-....|++..|+..++.+... .|+ ......+.++|...|+++.|...++. ..|++..++..+...+...
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~-~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~------~~~~~~~a~~~la~~~~~~ 78 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS-SPERDVERDVFLYRAYLAQRKYGVVLDEIKP------SSAPELQAVRMFAEYLASH 78 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC-SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT------TSCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHhcccC-CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc------cCChhHHHHHHHHHHHcCC
Confidence 44566789999999998876542 333 34667788999999999999976643 2444677888888888888
Q ss_pred CCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 038748 255 CDGIYETVNSLKRMMERGCNP-GMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAM 333 (482)
Q Consensus 255 ~~~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 333 (482)
++.++|++.++++...+..| +...+..+...+...|++++|.+.++. +.+...+..++..|.+.|++++|.
T Consensus 79 -~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-------~~~~~~~~~l~~~~~~~g~~~~A~ 150 (291)
T 3mkr_A 79 -SRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-------GDSLECMAMTVQILLKLDRLDLAR 150 (291)
T ss_dssp -TTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-------CCSHHHHHHHHHHHHHTTCHHHHH
T ss_pred -CcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999999877555 455666777899999999999999875 457788999999999999999999
Q ss_pred HHHHHHHHCCCCCCHhhHH---HHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHH
Q 038748 334 KLLDEMVYNGAFPDIQTYN---ILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMI 410 (482)
Q Consensus 334 ~~~~~m~~~g~~p~~~~~~---~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 410 (482)
+.|+++.+.. |+....+ ..+..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|.+.|++..
T Consensus 151 ~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al 227 (291)
T 3mkr_A 151 KELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEAL 227 (291)
T ss_dssp HHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999863 5543221 22333445689999999999999874 3478889999999999999999999999999
Q ss_pred HcCCCCChhhHHHHHHHHHhcCChhH-HHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccHHHHHHH
Q 038748 411 ENHCSDLSETGNLLVAGLCDMHMLPE-AVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEEL 475 (482)
Q Consensus 411 ~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 475 (482)
+.. +-+..++..++..+...|+.++ +.++++++.+.. |+... +.....+.+.++++..-
T Consensus 228 ~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~--P~~~~---~~d~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 228 DKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH--RSHPF---IKEYRAKENDFDRLVLQ 287 (291)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCHH---HHHHHHHHHHHHHHHHH
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--CCChH---HHHHHHHHHHHHHHHHH
Confidence 864 3456788899999999999976 678999998776 44322 23456667777776543
No 34
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.72 E-value=8.5e-14 Score=141.41 Aligned_cols=324 Identities=12% Similarity=0.054 Sum_probs=181.9
Q ss_pred CCCCHHHHHHHHH--hhcCCchhHhHHhhhhhcCCC-CCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHH
Q 038748 63 IRVSQETVEQVLK--FSYSHPGPAVKFFRWSAYQLN-DKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFA 139 (482)
Q Consensus 63 ~~~~~~~~~~ll~--~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 139 (482)
-..+|..+....+ ...|.+.+|+++++.+...+. +.-+....+.++....+. +..+..+..+...... ..
T Consensus 981 e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d------~~ 1053 (1630)
T 1xi4_A 981 ETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD------AP 1053 (1630)
T ss_pred cccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc------HH
Confidence 3466666666666 456778888888886664322 223445556666555555 4455555555444211 22
Q ss_pred HHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 038748 140 SVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERD 219 (482)
Q Consensus 140 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 219 (482)
.+...+...|.+++|..+|++... .....+.++. ..+++++|.++.+++. +..+|..+..++...|+
T Consensus 1054 eIA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aervn-----~p~vWsqLAKAql~~G~ 1120 (1630)
T 1xi4_A 1054 DIANIAISNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERCN-----EPAVWSQLAKAQLQKGM 1120 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhcC-----CHHHHHHHHHHHHhCCC
Confidence 255556666777777777766421 1122222222 4566666666666553 35666677777777777
Q ss_pred HHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 038748 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFI 299 (482)
Q Consensus 220 ~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 299 (482)
+++|.+.|.+. ++...|..++.++.+. |++++|.+.|...++.. ++....+.++.+|++.+++++...+
T Consensus 1121 ~kEAIdsYiKA--------dD~say~eVa~~~~~l-GkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~f 1189 (1630)
T 1xi4_A 1121 VKEAIDSYIKA--------DDPSSYMEVVQAANTS-GNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEF 1189 (1630)
T ss_pred HHHHHHHHHhc--------CChHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHH
Confidence 77777766443 2455666666666666 77777777776655543 2222233466666666666643333
Q ss_pred HHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 038748 300 WGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNEN 379 (482)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 379 (482)
.. .++...|..+...|...|++++|..+|... ..|..+..++++.|++++|.+.+++..
T Consensus 1190 I~--------~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~---- 1248 (1630)
T 1xi4_A 1190 IN--------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN---- 1248 (1630)
T ss_pred Hh--------CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC----
Confidence 21 234445555666666666666666666653 256666666666666666666666551
Q ss_pred ccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 038748 380 VLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMA 445 (482)
Q Consensus 380 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 445 (482)
+..+|..+..+|...|++..|...... +..+...+..++..|.+.|.+++|+.+++...
T Consensus 1249 --n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL 1307 (1630)
T 1xi4_A 1249 --STRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAAL 1307 (1630)
T ss_pred --CHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 334555555555555555555554332 22233344555556666666666666665544
No 35
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.71 E-value=2.5e-13 Score=138.05 Aligned_cols=337 Identities=10% Similarity=0.048 Sum_probs=261.7
Q ss_pred hHhHHhhhhhcC-CCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHhhCChhhHHHHH
Q 038748 83 PAVKFFRWSAYQ-LNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENV---LSLATFASVFSSYVVADRVKDAITTF 158 (482)
Q Consensus 83 ~a~~~~~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~ 158 (482)
.-.++.+|...- ..-..++.--...+.+|...|.+.+|+++++.....+. .+...-+.++.+..+. +..+..+..
T Consensus 966 ~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI 1044 (1630)
T 1xi4_A 966 YRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYI 1044 (1630)
T ss_pred HHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHH
Confidence 334566664432 12345666777888999999999999999999985543 3456667777777777 556777766
Q ss_pred HHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC
Q 038748 159 DVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDP 238 (482)
Q Consensus 159 ~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p 238 (482)
+..... + ..-+...+...|.+++|..+|++.. -.....+.++. ..+++++|.++.++..
T Consensus 1045 ~kLd~~----d---~~eIA~Iai~lglyEEAf~IYkKa~----~~~~A~~VLie---~i~nldrAiE~Aervn------- 1103 (1630)
T 1xi4_A 1045 NRLDNY----D---APDIANIAISNELFEEAFAIFRKFD----VNTSAVQVLIE---HIGNLDRAYEFAERCN------- 1103 (1630)
T ss_pred HHhhhc----c---HHHHHHHHHhCCCHHHHHHHHHHcC----CHHHHHHHHHH---HHhhHHHHHHHHHhcC-------
Confidence 666531 2 3347778889999999999999864 12222233332 7789999999988662
Q ss_pred CChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHH
Q 038748 239 DNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNM 318 (482)
Q Consensus 239 ~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 318 (482)
+..+|..+..++... |++++|++.|.+. -|...|..++.+|.+.|++++|.+.+.... +. .++....+.
T Consensus 1104 -~p~vWsqLAKAql~~-G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mAr-k~--~~e~~Idt~ 1172 (1630)
T 1xi4_A 1104 -EPAVWSQLAKAQLQK-GMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMAR-KK--ARESYVETE 1172 (1630)
T ss_pred -CHHHHHHHHHHHHhC-CCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHH-hh--cccccccHH
Confidence 456899999999999 9999999999663 467788899999999999999999999875 33 344444556
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCC
Q 038748 319 MISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDD 398 (482)
Q Consensus 319 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 398 (482)
++.+|++.+++++...+. + .++...|..+...|...|++++|..+|... ..|..+..+|.+.|+
T Consensus 1173 LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge 1236 (1630)
T 1xi4_A 1173 LIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGE 1236 (1630)
T ss_pred HHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCC
Confidence 999999999988644332 2 356677778999999999999999999985 379999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHH
Q 038748 399 PYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKK 478 (482)
Q Consensus 399 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 478 (482)
+++|.+.+++. .+..+|..+-.+|...|++..|..+... +..++..+..++..|.+.|.+++|+.+++.
T Consensus 1237 ~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~ 1305 (1630)
T 1xi4_A 1237 YQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEA 1305 (1630)
T ss_pred HHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999876 3458999999999999999999887653 456778888999999999999999999986
Q ss_pred H
Q 038748 479 C 479 (482)
Q Consensus 479 m 479 (482)
-
T Consensus 1306 a 1306 (1630)
T 1xi4_A 1306 A 1306 (1630)
T ss_pred H
Confidence 5
No 36
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.70 E-value=1.2e-13 Score=132.40 Aligned_cols=356 Identities=12% Similarity=-0.061 Sum_probs=238.6
Q ss_pred HHHhhcCCchhHhHHhhhhhcC-------CCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcC--------CCCHHH
Q 038748 73 VLKFSYSHPGPAVKFFRWSAYQ-------LNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKEN--------VLSLAT 137 (482)
Q Consensus 73 ll~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~ 137 (482)
.+....|+.++|++.|+..... ........+|+.+..+|...|++++|...+++..... +....+
T Consensus 59 ~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~ 138 (472)
T 4g1t_A 59 YLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPEL 138 (472)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHH
Confidence 3446689999999999865431 1233446789999999999999999999999876531 234567
Q ss_pred HHHHHHHHHhh--CChhhHHHHHHHHHhcCCCCCHhhHHHHHHH---HHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHH
Q 038748 138 FASVFSSYVVA--DRVKDAITTFDVMEQYGCKHDVFALNSLLSA---ICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLE 212 (482)
Q Consensus 138 ~~~li~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~---~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 212 (482)
+..+..++... +++++|++.|++..+... -+...+..+..+ +...++.++|++.+++...-.+.+..++..+..
T Consensus 139 ~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p-~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~ 217 (472)
T 4g1t_A 139 DCEEGWTRLKCGGNQNERAKVCFEKALEKKP-KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLAL 217 (472)
T ss_dssp HHHHHHHHHHHCTTHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHccccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHH
Confidence 77666666554 579999999999988643 245555555544 345677888988888765444566777776665
Q ss_pred HHHh----cCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 038748 213 GWEK----ERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECL 288 (482)
Q Consensus 213 ~~~~----~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 288 (482)
.+.. .|++++|.+.+++... ..|+...++..+...+... |++++|++.+++..+.. +-+..++..+..+|.
T Consensus 218 ~~~~~~~~~~~~~~a~~~~~~al~---~~~~~~~~~~~lg~~~~~~-~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~ 292 (472)
T 4g1t_A 218 KLHKMREEGEEEGEGEKLVEEALE---KAPGVTDVLRSAAKFYRRK-DEPDKAIELLKKALEYI-PNNAYLHCQIGCCYR 292 (472)
T ss_dssp HHHHCC------CHHHHHHHHHHH---HCSSCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHH---hCccHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHhC-CChHHHHHHHHHHHH
Confidence 5544 5678899999998874 3777888999999999999 99999999999998764 234555665555543
Q ss_pred hc-------------------CChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh
Q 038748 289 TG-------------------QNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQ 349 (482)
Q Consensus 289 ~~-------------------g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 349 (482)
.. +..+.|...+....+.. +.+..++..+...|...|++++|+..|++..+....+...
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~ 370 (472)
T 4g1t_A 293 AKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN--DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAK 370 (472)
T ss_dssp HHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC--TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC--CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHH
Confidence 21 23566777777775322 3345567888999999999999999999998864433221
Q ss_pred --hHHHHHH-HHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 038748 350 --TYNILFE-FLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVA 426 (482)
Q Consensus 350 --~~~~ll~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 426 (482)
.+..+.. .....|+.++|...|++.++. .|+...... ....+.++++...+.+ +.+..+|+.+..
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~---------~~~~l~~~~~~~l~~~-p~~~~~~~~LG~ 438 (472)
T 4g1t_A 371 QLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEK---------MKDKLQKIAKMRLSKN-GADSEALHVLAF 438 (472)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHH---------HHHHHHHHHHHHHHHC-C-CTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHH---------HHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 1222222 345789999999999999885 344322221 2234455566655543 345689999999
Q ss_pred HHHhcCChhHHHHHHHHHHHcC
Q 038748 427 GLCDMHMLPEAVKYAKGMAEKG 448 (482)
Q Consensus 427 ~~~~~g~~~~A~~~~~~m~~~~ 448 (482)
.|...|++++|++.|++..+.+
T Consensus 439 ~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 439 LQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHHHHCC-------------
T ss_pred HHHHcCCHHHHHHHHHHHHhcC
Confidence 9999999999999999998765
No 37
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.66 E-value=4.8e-14 Score=124.45 Aligned_cols=237 Identities=8% Similarity=-0.032 Sum_probs=165.1
Q ss_pred HhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCC--HhhHHHHHH
Q 038748 101 PYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHD--VFALNSLLS 178 (482)
Q Consensus 101 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~ 178 (482)
...+......+...|++++|+..|++..+..+.+..++..+..++...|++++|++.++...+.+..++ ...|..+..
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 445666677788888888888888888887776666788888888888888888888888877432222 233777788
Q ss_pred HHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCCh
Q 038748 179 AICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGI 258 (482)
Q Consensus 179 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 258 (482)
.+...|++++|.+.|+......+.+..++..+..+|...|++++|...|++.. ...|++...+..+...+... +++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al---~~~~~~~~~~~~l~~~~~~~-~~~ 158 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQI---RPTTTDPKVFYELGQAYYYN-KEY 158 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGC---CSSCCCHHHHHHHHHHHHHT-TCH
T ss_pred HHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHh---hcCCCcHHHHHHHHHHHHHH-HHH
Confidence 88888888888888887655445567788888888888888888888888775 34676677777666344445 688
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC---hhHHHHHHHHhhcccCCCCC------HHHHHHHHHHHHhcCCH
Q 038748 259 YETVNSLKRMMERGCNPGMTFFKLAFEECLTGQN---LRGAEFIWGAMVGRIGFRPD------THMYNMMISLYCYSNET 329 (482)
Q Consensus 259 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~~~~------~~~~~~li~~~~~~~~~ 329 (482)
++|++.|++..+.. +.+...+..+...+...|+ +++|...+++.++...-.|+ ..+|..+...|...|++
T Consensus 159 ~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 237 (272)
T 3u4t_A 159 VKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDK 237 (272)
T ss_dssp HHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCH
Confidence 88888888777653 2235556666666666666 66677777766533222233 24566666667777777
Q ss_pred HHHHHHHHHHHHC
Q 038748 330 GAAMKLLDEMVYN 342 (482)
Q Consensus 330 ~~a~~~~~~m~~~ 342 (482)
++|.+.|++..+.
T Consensus 238 ~~A~~~~~~al~~ 250 (272)
T 3u4t_A 238 VKADAAWKNILAL 250 (272)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 7777777777664
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.65 E-value=4.3e-14 Score=123.56 Aligned_cols=226 Identities=9% Similarity=0.018 Sum_probs=177.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcC--CCCC----H
Q 038748 204 NDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERG--CNPG----M 277 (482)
Q Consensus 204 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~--~~~~----~ 277 (482)
...+..+...+...|++++|...|++.... . ++..++..+...+... |++++|++.+++..+.. ..++ .
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~-~---~~~~~~~~~~~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 79 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWEL-H---KDITYLNNRAAAEYEK-GEYETAISTLNDAVEQGREMRADYKVIS 79 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-S---CCTHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHh-h---ccHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHhCcccccchHHHH
Confidence 467888888999999999999999998865 3 3567888888888888 99999999999887642 1112 4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 038748 278 TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEF 357 (482)
Q Consensus 278 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 357 (482)
.++..+...+...|++++|...|+.+.+ ..|+. ..+...|++++|...++.+.+... .+...+..+...
T Consensus 80 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~---~~~~~-------~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~ 148 (258)
T 3uq3_A 80 KSFARIGNAYHKLGDLKKTIEYYQKSLT---EHRTA-------DILTKLRNAEKELKKAEAEAYVNP-EKAEEARLEGKE 148 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCCCH-------HHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHh---cCchh-------HHHHHHhHHHHHHHHHHHHHHcCc-chHHHHHHHHHH
Confidence 7788888888899999999999998863 24553 345666788899999988887522 244567777888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHH
Q 038748 358 LVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEA 437 (482)
Q Consensus 358 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 437 (482)
+...|++++|...++++.+.... +...+..+..+|...|++++|.+.++...+.. +.+...|..+...|...|++++|
T Consensus 149 ~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A 226 (258)
T 3uq3_A 149 YFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASA 226 (258)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHH
Confidence 88889999999999988876433 56778888888889999999999998888754 23457788888888889999999
Q ss_pred HHHHHHHHHc
Q 038748 438 VKYAKGMAEK 447 (482)
Q Consensus 438 ~~~~~~m~~~ 447 (482)
...+++..+.
T Consensus 227 ~~~~~~a~~~ 236 (258)
T 3uq3_A 227 LETLDAARTK 236 (258)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9988887654
No 39
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.64 E-value=3.1e-14 Score=120.97 Aligned_cols=197 Identities=12% Similarity=-0.069 Sum_probs=108.8
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 038748 276 GMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILF 355 (482)
Q Consensus 276 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll 355 (482)
+...+..+...+...|++++|...|+..++.. +.+...+..+...+.+.|++++|+..|++..+... -+...+..+.
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg 80 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN--PQDPEALYWLARTQLKLGLVNPALENGKTLVARTP-RYLGGYMVLS 80 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHH
Confidence 34445555555555566666665555554111 22345555555555566666666666655555321 1334455555
Q ss_pred HHHHhc-----------CCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHH
Q 038748 356 EFLVKG-----------RKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLL 424 (482)
Q Consensus 356 ~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 424 (482)
..+... |++++|...+++..+..+. +...+..+..+|...|++++|.+.|++..+.+ .+...+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 555555 6777777777776664332 45566666667777777777777777776655 555666667
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 038748 425 VAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKC 479 (482)
Q Consensus 425 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 479 (482)
..+|...|++++|+..|++..+... .+...+..+..++.+.|++++|.+.+++.
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAP-KDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 7777777777777777777766542 34556666666777777777777766654
No 40
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.63 E-value=8.8e-14 Score=121.58 Aligned_cols=223 Identities=13% Similarity=0.071 Sum_probs=117.0
Q ss_pred HHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhC---CCCCC----HHHHHH
Q 038748 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDG---RIKPD----NDTYAI 209 (482)
Q Consensus 137 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~----~~~~~~ 209 (482)
.|..+...+...|++++|...|+...+.. .+...+..+..++...|++++|.+.++.... ...++ ..++..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 34444445555555555555555554443 3444455555555555555555555544322 11111 345555
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 038748 210 LLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLT 289 (482)
Q Consensus 210 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 289 (482)
+..+|...|++++|...|++.... .|+ . ..+... |++++|.+.++.+.... +.+...+..+...+..
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~---~~~-~-------~~~~~~-~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 151 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTE---HRT-A-------DILTKL-RNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFT 151 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CCC-H-------HHHHHH-HHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc---Cch-h-------HHHHHH-hHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHH
Confidence 555555555555555555555432 221 1 223333 55566666665555532 1233445555556666
Q ss_pred cCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 038748 290 GQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASG 369 (482)
Q Consensus 290 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 369 (482)
.|++++|...++.+++.. +.+..++..+...|...|++++|...|++..+... .+...+..+...+...|++++|..
T Consensus 152 ~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~ 228 (258)
T 3uq3_A 152 KSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATAQIAVKEYASALE 228 (258)
T ss_dssp TTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH-HHHHHHHHHHHHHHHHhhHHHHHH
Confidence 666666666666654221 23455566666666666666666666666665421 235556666666666666666666
Q ss_pred HHHHHHhC
Q 038748 370 LFNEMVKN 377 (482)
Q Consensus 370 ~~~~~~~~ 377 (482)
.++...+.
T Consensus 229 ~~~~a~~~ 236 (258)
T 3uq3_A 229 TLDAARTK 236 (258)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 66666553
No 41
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.63 E-value=5.1e-14 Score=119.61 Aligned_cols=208 Identities=12% Similarity=-0.062 Sum_probs=106.2
Q ss_pred CCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHH
Q 038748 99 HSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLS 178 (482)
Q Consensus 99 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 178 (482)
++...+..+...+.+.|++++|...|++..+..+.+...+..+..++.+.|++++|+..|++..+... .+...+..+..
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~ 81 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTP-RYLGGYMVLSE 81 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHH
Confidence 45566777777777777777777777777777666777777777777777777777777777766542 24555666666
Q ss_pred HHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCCh
Q 038748 179 AICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGI 258 (482)
Q Consensus 179 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 258 (482)
++...+. .. .. .+...|++++|+..|++..+ +.|++..++..+...+... |++
T Consensus 82 ~~~~~~~-----------~~---~~---------~~~~~g~~~~A~~~~~~al~---~~P~~~~~~~~lg~~~~~~-g~~ 134 (217)
T 2pl2_A 82 AYVALYR-----------QA---ED---------RERGKGYLEQALSVLKDAER---VNPRYAPLHLQRGLVYALL-GER 134 (217)
T ss_dssp HHHHHHH-----------TC---SS---------HHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHT-TCH
T ss_pred HHHHhhh-----------hh---hh---------hcccccCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHc-CCh
Confidence 6655500 00 00 00112555555555555542 2444444555555555555 555
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038748 259 YETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDE 338 (482)
Q Consensus 259 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 338 (482)
++|+..|++..+.. .+...+..+..++...|++++|...|+..++.. +.+...+..+...+...|++++|+..|++
T Consensus 135 ~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 135 DKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA--PKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHTC-------------
T ss_pred HHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 55555555554443 344444455555555555555555555544211 22344444455555555555555554443
No 42
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.62 E-value=3.4e-13 Score=117.49 Aligned_cols=197 Identities=10% Similarity=-0.060 Sum_probs=102.8
Q ss_pred HhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHH
Q 038748 101 PYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAI 180 (482)
Q Consensus 101 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 180 (482)
...|..+...+...|++++|...|+++....+.+..++..+...+...|++++|.+.|+++.+... .+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHH
Confidence 344555556666666666666666666665555555666666666666666666666666655432 2444555555555
Q ss_pred HhcCChHhHHHHHHHhhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCCh
Q 038748 181 CRDGKTIDAWQFLRVVDG--RIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGI 258 (482)
Q Consensus 181 ~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 258 (482)
...|++++|.++++.+.. ..+.+...+..+..+|...|++++|...|++.... .|.+...+..+...+... |++
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~-g~~ 191 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL---NRNQPSVALEMADLLYKE-REY 191 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHT-TCH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CcccHHHHHHHHHHHHHc-CCH
Confidence 555555555555555443 22334445555555555555555555555555432 333344444444444444 555
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 038748 259 YETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAM 303 (482)
Q Consensus 259 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 303 (482)
++|...++++.+.. +.+...+..+...+...|++++|.+.++.+
T Consensus 192 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 235 (252)
T 2ho1_A 192 VPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQL 235 (252)
T ss_dssp HHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 55555555444321 123333444444444444444444444444
No 43
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.62 E-value=2.6e-12 Score=113.39 Aligned_cols=224 Identities=13% Similarity=0.040 Sum_probs=158.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHc----cCCChHHHHHHHHHHHHcCCCCCHH
Q 038748 203 DNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLK----GCDGIYETVNSLKRMMERGCNPGMT 278 (482)
Q Consensus 203 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~----~~~~~~~a~~~~~~m~~~~~~~~~~ 278 (482)
+..++..+...|...|++++|...|++... |++..++..+...+.. . +++++|++.|++..+.+ +..
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~-----~~~~~a~~~lg~~~~~g~~~~-~~~~~A~~~~~~a~~~~---~~~ 75 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD-----LKENSGCFNLGVLYYQGQGVE-KNLKKAASFYAKACDLN---YSN 75 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHTSSSC-CCHHHHHHHHHHHHHTT---CHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHcCCCcC-CCHHHHHHHHHHHHHCC---CHH
Confidence 455666667777777777777777777663 3345566666666666 6 77777777777777665 556
Q ss_pred HHHHHHHHHHh----cCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHhh
Q 038748 279 FFKLAFEECLT----GQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCY----SNETGAAMKLLDEMVYNGAFPDIQT 350 (482)
Q Consensus 279 ~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~ 350 (482)
.+..+...|.. .+++++|.+.|+... +.+ +...+..+...|.. .+++++|+..|++..+.+ +...
T Consensus 76 a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~-~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a 148 (273)
T 1ouv_A 76 GCHLLGNLYYSGQGVSQNTNKALQYYSKAC-DLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDG 148 (273)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-HTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHhCCCCcccCHHHHHHHHHHHH-HcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHH
Confidence 66667777777 777777777777775 322 56667777777777 778888888887777764 4555
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhc----CCChHHHHHHHHHHHHcCCCCChhhHH
Q 038748 351 YNILFEFLVK----GRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMD----SDDPYVAIKFWKYMIENHCSDLSETGN 422 (482)
Q Consensus 351 ~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~ 422 (482)
+..+...+.. .+++++|..+|++..+.+ +...+..+...|.. .+++++|.+.|+...+.+. ...+.
T Consensus 149 ~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~---~~a~~ 222 (273)
T 1ouv_A 149 CTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN---GGGCF 222 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC---HHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC---HHHHH
Confidence 6666666666 778888888888777754 44566677777777 7888888888888777542 45666
Q ss_pred HHHHHHHh----cCChhHHHHHHHHHHHcC
Q 038748 423 LLVAGLCD----MHMLPEAVKYAKGMAEKG 448 (482)
Q Consensus 423 ~li~~~~~----~g~~~~A~~~~~~m~~~~ 448 (482)
.+...|.. .+++++|.+.|++..+.|
T Consensus 223 ~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 223 NLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 67777777 788888888888877776
No 44
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.62 E-value=3e-13 Score=115.46 Aligned_cols=199 Identities=9% Similarity=-0.042 Sum_probs=117.8
Q ss_pred CHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHH
Q 038748 100 SPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSA 179 (482)
Q Consensus 100 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 179 (482)
+...|..+...+...|++++|.+.|+++.+..+.+..++..+...+...|++++|.+.++.+.+... .+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP-DSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHHHHHH
Confidence 4556666667777777777777777777666665666666777777777777777777776666432 245556666666
Q ss_pred HHhc-CChHhHHHHHHHhhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCC
Q 038748 180 ICRD-GKTIDAWQFLRVVDG--RIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD 256 (482)
Q Consensus 180 ~~~~-g~~~~a~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 256 (482)
+... |++++|...++.+.. ..+.+...+..+..++...|++++|...++++... .|++...+..+...+... |
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~-~ 161 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA---QPQFPPAFKELARTKMLA-G 161 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHH-T
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCchHHHHHHHHHHHc-C
Confidence 6666 666666666666544 22233455666666666666666666666666532 344455555555555555 6
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 038748 257 GIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAM 303 (482)
Q Consensus 257 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 303 (482)
++++|.+.+++..+.....+...+..+...+...|+.+.+..+++.+
T Consensus 162 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 208 (225)
T 2vq2_A 162 QLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQL 208 (225)
T ss_dssp CHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 66666666655554321123444444444455555555555555554
No 45
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.61 E-value=1.8e-12 Score=114.47 Aligned_cols=224 Identities=12% Similarity=0.013 Sum_probs=192.9
Q ss_pred CCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHhhcccCCCCCH
Q 038748 238 PDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLT----GQNLRGAEFIWGAMVGRIGFRPDT 313 (482)
Q Consensus 238 p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~ 313 (482)
|.+..++..+...+... +++++|++.|++..+.+ +...+..+...+.. .+++++|...|++.. +.+ +.
T Consensus 3 ~~~~~a~~~lg~~~~~~-~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~-~~~---~~ 74 (273)
T 1ouv_A 3 EQDPKELVGLGAKSYKE-KDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKAC-DLN---YS 74 (273)
T ss_dssp --CHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-HTT---CH
T ss_pred CCChHHHHHHHHHHHhC-CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHH-HCC---CH
Confidence 45677888888889999 99999999999998843 56678888889999 999999999999997 433 77
Q ss_pred HHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCccChhh
Q 038748 314 HMYNMMISLYCY----SNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVK----GRKLWEASGLFNEMVKNENVLNHEN 385 (482)
Q Consensus 314 ~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~ 385 (482)
..+..+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|..+|++..+.+ +...
T Consensus 75 ~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a 148 (273)
T 1ouv_A 75 NGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDG 148 (273)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHH
Confidence 888899999999 999999999999999875 67788888889998 999999999999999876 5567
Q ss_pred HHHHHHHHhc----CCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHH
Q 038748 386 CRAAVRVYMD----SDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCD----MHMLPEAVKYAKGMAEKGIQVTPFALS 457 (482)
Q Consensus 386 ~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~ 457 (482)
+..+...|.. .+++++|.+.|+...+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+.
T Consensus 149 ~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 222 (273)
T 1ouv_A 149 CTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCF 222 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHH
Confidence 7788888887 899999999999999865 35677888888988 999999999999998876 367788
Q ss_pred HHHHHHHH----hccHHHHHHHHHHHhh
Q 038748 458 KLKQILIK----ARKEAVYEELLKKCKA 481 (482)
Q Consensus 458 ~l~~~~~~----~g~~~~a~~~~~~m~~ 481 (482)
.+...|.+ .+++++|.+.+++..+
T Consensus 223 ~l~~~~~~g~~~~~~~~~A~~~~~~a~~ 250 (273)
T 1ouv_A 223 NLGAMQYNGEGVTRNEKQAIENFKKGCK 250 (273)
T ss_dssp HHHHHHHTTSSSSCCSTTHHHHHHHHHH
T ss_pred HHHHHHHcCCCcccCHHHHHHHHHHHHH
Confidence 88888988 8999999999988653
No 46
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.61 E-value=4.1e-13 Score=118.44 Aligned_cols=235 Identities=11% Similarity=0.002 Sum_probs=131.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCC--HHHHHHH
Q 038748 206 TYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPG--MTFFKLA 283 (482)
Q Consensus 206 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~l 283 (482)
.+......+...|++++|...|++... ..|++..++..+...+... |++++|++.+++..+....++ ...|..+
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~---~~p~~~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEA---KKYNSPYIYNRRAVCYYEL-AKYDLAQKDIETYFSKVNATKAKSADFEYY 80 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHH---TTCCCSTTHHHHHHHHHHT-TCHHHHHHHHHHHHTTSCTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHH-hhHHHHHHHHHHHHhccCchhHHHHHHHHH
Confidence 344455555666666666666666653 2444455566666666666 666666666666655221111 2235556
Q ss_pred HHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 038748 284 FEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRK 363 (482)
Q Consensus 284 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 363 (482)
...+...|++++|.+.|+...+.. +.+..++..+...|...|++++|+..|++..+.. +.+...+..+...+...++
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~ 157 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVDRD--TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKE 157 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHH
Confidence 666666666666666666665221 2234556666666666666666666666665541 1233444444423333446
Q ss_pred HHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCC---hHHHHHHHHHHHHcC-CCCC------hhhHHHHHHHHHhcCC
Q 038748 364 LWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDD---PYVAIKFWKYMIENH-CSDL------SETGNLLVAGLCDMHM 433 (482)
Q Consensus 364 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~~-~~p~------~~~~~~li~~~~~~g~ 433 (482)
+++|...|+++.+.... +...+..+..++...|+ +++|...+++..+.. -.|+ ...|..+...|...|+
T Consensus 158 ~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 236 (272)
T 3u4t_A 158 YVKADSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRD 236 (272)
T ss_dssp HHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCC
Confidence 66777766666654322 34455555555655565 666666666665421 1122 1355666667777777
Q ss_pred hhHHHHHHHHHHHcC
Q 038748 434 LPEAVKYAKGMAEKG 448 (482)
Q Consensus 434 ~~~A~~~~~~m~~~~ 448 (482)
+++|.+.|++..+..
T Consensus 237 ~~~A~~~~~~al~~~ 251 (272)
T 3u4t_A 237 KVKADAAWKNILALD 251 (272)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcC
Confidence 777777777776654
No 47
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.60 E-value=8.9e-13 Score=121.23 Aligned_cols=234 Identities=5% Similarity=-0.050 Sum_probs=183.1
Q ss_pred CHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCC-hhhHHHHHHHHHhcCCCCCHhhHHHHHH
Q 038748 100 SPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADR-VKDAITTFDVMEQYGCKHDVFALNSLLS 178 (482)
Q Consensus 100 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 178 (482)
+...|+.+...+...|++++|+..|+++...++.+..+|+.+..++...|+ +++|+..|++..+... -+...|+.+..
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~g~ 174 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHHHH
Confidence 356788888889999999999999999999988888999999999999996 9999999999988754 36788888999
Q ss_pred HHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCCh
Q 038748 179 AICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGI 258 (482)
Q Consensus 179 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 258 (482)
++...|++++|+..|+++....+.+...|..+..++.+.|++++|+..|+++.. +.|++..+|+.+...+....|..
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~---l~P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK---EDVRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCcc
Confidence 999999999999999987665677888999999999999999999999999874 47888888988888888831665
Q ss_pred HHH-----HHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--ChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcC----
Q 038748 259 YET-----VNSLKRMMERGCNPGMTFFKLAFEECLTGQ--NLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSN---- 327 (482)
Q Consensus 259 ~~a-----~~~~~~m~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~---- 327 (482)
++| ++.|++..... +-+...|..+...+...| ++++|.+.+..+ +. .+.+...+..+...|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~--~p~~~~al~~La~~~~~~~~~~~ 327 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP--SHSSPYLIAFLVDIYEDMLENQC 327 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT--TCCCHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc--CCCCHHHHHHHHHHHHHHhcccc
Confidence 777 47777776643 224566777777777766 577777777665 22 2345666777777777653
Q ss_pred -----CHHHHHHHHHHH-HH
Q 038748 328 -----ETGAAMKLLDEM-VY 341 (482)
Q Consensus 328 -----~~~~a~~~~~~m-~~ 341 (482)
..++|+++|+++ .+
T Consensus 328 ~~~~~~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 328 DNKEDILNKALELCEILAKE 347 (382)
T ss_dssp SSHHHHHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHHHHH
Confidence 247777777777 44
No 48
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.60 E-value=8e-13 Score=115.14 Aligned_cols=202 Identities=7% Similarity=-0.073 Sum_probs=130.1
Q ss_pred HHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 038748 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGW 214 (482)
Q Consensus 135 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 214 (482)
...+..+...+...|++++|.+.|+.+.+... .+...+..+...+...|++++|.+.++++....+.+...+..+...|
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDP-SSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHH
Confidence 45566777777777888888888777776542 35666777777777777777777777775543445666777777777
Q ss_pred HhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChh
Q 038748 215 EKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLR 294 (482)
Q Consensus 215 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 294 (482)
...|++++|...++++.. .+..|.+...+..+...+... |++++|.+.+++..+.. +.+...+..+...+...|+++
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~ 192 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQM-KKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYV 192 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHH
Confidence 777777777777777654 234555556666666666666 77777777777666543 223555666666666666666
Q ss_pred HHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 038748 295 GAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYN 342 (482)
Q Consensus 295 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 342 (482)
+|...++.+.+. .+.+...+..+...+...|++++|.+.++++.+.
T Consensus 193 ~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 193 PARQYYDLFAQG--GGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHTT--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 666666666421 1234455555666666666666666666666553
No 49
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.60 E-value=1.3e-13 Score=119.33 Aligned_cols=200 Identities=10% Similarity=-0.016 Sum_probs=112.8
Q ss_pred CCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHH
Q 038748 99 HSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLS 178 (482)
Q Consensus 99 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 178 (482)
.+...|..+...+...|++++|...|+++.+..+.+..++..+...+...|++++|...|+.+.+... .+...+..+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~ 99 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDS-SAATAYYGAGN 99 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-cchHHHHHHHH
Confidence 44556666666777777777777777777776666666777777777777777777777777666532 25566666666
Q ss_pred HHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCCh
Q 038748 179 AICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGI 258 (482)
Q Consensus 179 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 258 (482)
.+...|++++|.+.++.+....+.+...+..+...+...|++++|...++++... .|++...+..+...+... |++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~-~~~ 175 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL---NENDTEARFQFGMCLANE-GML 175 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHH-TCC
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHc-CCH
Confidence 6666777777777666654444455666666666666777777777766666533 444555566666666666 666
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 038748 259 YETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMV 304 (482)
Q Consensus 259 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 304 (482)
++|++.++++.+.. +.+..++..+..++...|++++|.+.++.+.
T Consensus 176 ~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 220 (243)
T 2q7f_A 176 DEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAI 220 (243)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 66666666655542 2234455555556666666666666666554
No 50
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.59 E-value=4.4e-14 Score=124.86 Aligned_cols=93 Identities=12% Similarity=-0.067 Sum_probs=36.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 038748 206 TYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFE 285 (482)
Q Consensus 206 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 285 (482)
++..+..+|...|++++|...|++.... .|++..++..+...+... |++++|++.|++..+.. +.+...+..+..
T Consensus 45 ~~~~l~~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~al~~~-~~~~~~~~~la~ 119 (275)
T 1xnf_A 45 LLYERGVLYDSLGLRALARNDFSQALAI---RPDMPEVFNYLGIYLTQA-GNFDAAYEAFDSVLELD-PTYNYAHLNRGI 119 (275)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHc---CCCcHHHHHHHHHHHHHc-cCHHHHHHHHHHHHhcC-ccccHHHHHHHH
Confidence 3444444444444444444444444321 333333444444444444 44444444444443321 112233333333
Q ss_pred HHHhcCChhHHHHHHHHh
Q 038748 286 ECLTGQNLRGAEFIWGAM 303 (482)
Q Consensus 286 ~~~~~g~~~~a~~~~~~~ 303 (482)
.+...|++++|...|+.+
T Consensus 120 ~~~~~g~~~~A~~~~~~a 137 (275)
T 1xnf_A 120 ALYYGGRDKLAQDDLLAF 137 (275)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHH
Confidence 344444444444444433
No 51
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.59 E-value=3.7e-14 Score=125.38 Aligned_cols=118 Identities=8% Similarity=-0.151 Sum_probs=60.4
Q ss_pred hCCCcHHHHHHHHHHHhcCC----CCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHh
Q 038748 113 KNCLFDAMWDAIKSMKKENV----LSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTID 188 (482)
Q Consensus 113 ~~~~~~~a~~~~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 188 (482)
..|++++|+..|+++.+... .+..++..+...+...|++++|...|+.+.+... .+..++..+..++...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHccCHHH
Confidence 34555556666655555421 1344555555555555555555555555555432 234455555555555555555
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 038748 189 AWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMV 231 (482)
Q Consensus 189 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 231 (482)
|...|++.....+.+..++..+..+|...|++++|...|+++.
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 138 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFY 138 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 5555555433233344455555555555555555555555554
No 52
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.58 E-value=8.7e-13 Score=112.57 Aligned_cols=200 Identities=10% Similarity=-0.034 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 038748 204 NDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLA 283 (482)
Q Consensus 204 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 283 (482)
...+..+...+...|++++|...|+++... .|++...+..+...+... |++++|.+.++++.+.. +.+..++..+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~-~~~~~~~~~l 82 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKS---DPKNELAWLVRAEIYQYL-KVNDKAQESFRQALSIK-PDSAEINNNY 82 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHc-CChHHHHHHHHHHHHhC-CCChHHHHHH
Confidence 344555555555555555555555555432 343444555555555555 55555555555554432 2234444445
Q ss_pred HHHHHhc-CChhHHHHHHHHhhcccCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc
Q 038748 284 FEECLTG-QNLRGAEFIWGAMVGRIGFRPD-THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKG 361 (482)
Q Consensus 284 i~~~~~~-g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 361 (482)
...+... |++++|...++.+.+ .+..|+ ...+..+...+...|++++|+..++++.+... .+...+..+...+...
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~ 160 (225)
T 2vq2_A 83 GWFLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP-QFPPAFKELARTKMLA 160 (225)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCchHHHHHHHHHHHc
Confidence 5555555 555555555555542 111121 33444444455555555555555555444311 1233444444444444
Q ss_pred CCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHH
Q 038748 362 RKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMI 410 (482)
Q Consensus 362 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 410 (482)
|++++|..+++.+.+.....+...+..+...+...|+.+.|..+++.+.
T Consensus 161 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 209 (225)
T 2vq2_A 161 GQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQ 209 (225)
T ss_dssp TCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 4444444444444433211133333334444444444444444444443
No 53
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.58 E-value=1.3e-12 Score=120.25 Aligned_cols=217 Identities=8% Similarity=-0.005 Sum_probs=129.7
Q ss_pred HhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHhHHhcCCCCCChhhHHHHH
Q 038748 170 VFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERD-VANAKKTFGEMVIEVGWDPDNVPAYDSYL 248 (482)
Q Consensus 170 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~p~~~~~~~~l~ 248 (482)
...|+.+...+...|++++|++.|+.+....+-+..+|+.+..++...|+ +++|+..|++... +.|++..+|..+.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~---l~P~~~~a~~~~g 173 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIE---EQPKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH---HCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHH---HCCCCHHHHHHHH
Confidence 45567777777777888888888877655556677777777777777775 8888887777764 3676777777777
Q ss_pred HHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHh-cC
Q 038748 249 ITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCY-SN 327 (482)
Q Consensus 249 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~ 327 (482)
..+... |++++|+..|+++.+.. +-+...|..+..++...|++++|...++++++.. +-+...|+.+..++.. .|
T Consensus 174 ~~~~~~-g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~--P~~~~a~~~lg~~l~~l~~ 249 (382)
T 2h6f_A 174 VLVEWL-RDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED--VRNNSVWNQRYFVISNTTG 249 (382)
T ss_dssp HHHHHH-TCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHc-cCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcC
Confidence 777777 77777777777776643 2245566666666666666666666666665221 2245566666666666 44
Q ss_pred CHHHH-----HHHHHHHHHCCCCCCHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcC
Q 038748 328 ETGAA-----MKLLDEMVYNGAFPDIQTYNILFEFLVKGR--KLWEASGLFNEMVKNENVLNHENCRAAVRVYMDS 396 (482)
Q Consensus 328 ~~~~a-----~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 396 (482)
..++| +..|++..+.... +...|+.+...+...| ++++|.+.+.++ +.. ..+...+..+..+|.+.
T Consensus 250 ~~~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~ 322 (382)
T 2h6f_A 250 YNDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDM 322 (382)
T ss_dssp SCSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHH
Confidence 43555 2445554443111 2334444444444444 345555555444 211 11333444444444443
No 54
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.58 E-value=8.3e-13 Score=125.26 Aligned_cols=372 Identities=10% Similarity=-0.032 Sum_probs=243.1
Q ss_pred hhcCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCc---HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhC---
Q 038748 76 FSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLF---DAMWDAIKSMKKENVLSLATFASVFSSYVVAD--- 149 (482)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~--- 149 (482)
...|+++.|++.|...... + ++.++..+...|...|+. ++|...|+...+. +...+..+...+...+
T Consensus 14 ~~~g~~~~A~~~~~~aa~~-g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~~~~~~ 86 (452)
T 3e4b_A 14 LKRGDTVTAQQNYQQLAEL-G---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAAKPGAT 86 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHH-T---CCTGGGTCC-------------------------------CHHHHHHHHHTC--CC
T ss_pred HhCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHhCCCCC
Confidence 4578999999999987663 3 445666666777777877 8999999998866 5556667777555554
Q ss_pred --ChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhH---HHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 038748 150 --RVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDA---WQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAK 224 (482)
Q Consensus 150 --~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 224 (482)
++++|...|++..+.|. ...+..|...|...+..+.+ .+.+..... ..+...+..+...|...+.++++.
T Consensus 87 ~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~--~g~~~a~~~Lg~~y~~~~~~~~~~ 161 (452)
T 3e4b_A 87 EAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQA--AGYPEAGLAQVLLYRTQGTYDQHL 161 (452)
T ss_dssp HHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHH--HTCTTHHHHHHHHHHHHTCGGGGH
T ss_pred CcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcccCH
Confidence 78899999999998764 23677788888776654444 334443321 224556777888888888666555
Q ss_pred HHHHHhHHh-cCCCCCChhhHHHHHHHHHccCC---ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----CChhHH
Q 038748 225 KTFGEMVIE-VGWDPDNVPAYDSYLITLLKGCD---GIYETVNSLKRMMERGCNPGMTFFKLAFEECLTG----QNLRGA 296 (482)
Q Consensus 225 ~~~~~~~~~-~~~~p~~~~~~~~l~~~~~~~~~---~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~----g~~~~a 296 (482)
.....+.+. ....| .++..+...+... | +.++|++.|++..+.| .++...+..+...|... +++++|
T Consensus 162 ~~a~~~~~~a~~~~~---~a~~~Lg~~~~~~-g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A 236 (452)
T 3e4b_A 162 DDVERICKAALNTTD---ICYVELATVYQKK-QQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTA 236 (452)
T ss_dssp HHHHHHHHHHTTTCT---THHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHH
T ss_pred HHHHHHHHHHHcCCH---HHHHHHHHHHHHc-CCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHH
Confidence 543333322 12233 3788888888887 9 9999999999999887 34555555666666554 799999
Q ss_pred HHHHHHhhcccCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC-----CHHHHH
Q 038748 297 EFIWGAMVGRIGFRPDTHMYNMMISL-Y--CYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGR-----KLWEAS 368 (482)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~li~~-~--~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g-----~~~~a~ 368 (482)
.+.|+... +-+...+..|... | ...+++++|+..|++..+.| +...+..+...|. .| ++++|.
T Consensus 237 ~~~~~~aa-----~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~ 307 (452)
T 3e4b_A 237 QALLEKIA-----PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAE 307 (452)
T ss_dssp HHHHHHHG-----GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHH
T ss_pred HHHHHHHc-----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHH
Confidence 99999984 3355666777666 4 46899999999999999876 5566666777676 45 999999
Q ss_pred HHHHHHHhCCCccChhhHHHHHHHHhc----CCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCChhHHHHH
Q 038748 369 GLFNEMVKNENVLNHENCRAAVRVYMD----SDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCD----MHMLPEAVKY 440 (482)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~ 440 (482)
.+|++.. .| +...+..|...|.. ..++++|.+.|+...+.|. ......|...|.. ..+.++|..+
T Consensus 308 ~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~ 380 (452)
T 3e4b_A 308 AHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVF 380 (452)
T ss_dssp HHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHH
T ss_pred HHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHH
Confidence 9999987 33 55667777777776 4489999999999998774 2455556666653 4689999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHhh
Q 038748 441 AKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKCKA 481 (482)
Q Consensus 441 ~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 481 (482)
|+...+.|.. +.......+......++.++|..+.+++++
T Consensus 381 ~~~A~~~g~~-~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 381 SQLAKAQDTP-EANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HHHHHTTCCH-HHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 9999998853 333333333333445567778887777653
No 55
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.56 E-value=4.2e-13 Score=116.11 Aligned_cols=123 Identities=11% Similarity=-0.016 Sum_probs=41.9
Q ss_pred HHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccC
Q 038748 176 LLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255 (482)
Q Consensus 176 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 255 (482)
+...+...|++++|..+|+++....+.+..++..+...|...|++++|...++++... .|++..++..+...+...
T Consensus 29 ~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~- 104 (243)
T 2q7f_A 29 QMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALEL---DSSAATAYYGAGNVYVVK- 104 (243)
T ss_dssp -------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHT-
T ss_pred HHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCcchHHHHHHHHHHHHh-
Confidence 3333333444444444444333322333344444444444444444444444443321 222333333333333333
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 038748 256 DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAM 303 (482)
Q Consensus 256 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 303 (482)
|++++|.+.++++.+.. +.+...+..+...+...|++++|...++.+
T Consensus 105 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 151 (243)
T 2q7f_A 105 EMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRA 151 (243)
T ss_dssp TCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 44444444444433321 112233333333334444444444444433
No 56
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.56 E-value=3e-13 Score=126.73 Aligned_cols=301 Identities=13% Similarity=0.037 Sum_probs=185.2
Q ss_pred CCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhc---CCCCCC
Q 038748 168 HDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPD----NDTYAILLEGWEKERDVANAKKTFGEMVIEV---GWDPDN 240 (482)
Q Consensus 168 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~p~~ 240 (482)
.....+......+...|++++|...|++.....+.+ ..++..+...|...|++++|...+++..... +..|..
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 445556667777888888888888888754432333 3567777888888888888888888876531 112223
Q ss_pred hhhHHHHHHHHHccCCChHHHHHHHHHHHHcC----CCC-CHHHHHHHHHHHHhcCC--------------------hhH
Q 038748 241 VPAYDSYLITLLKGCDGIYETVNSLKRMMERG----CNP-GMTFFKLAFEECLTGQN--------------------LRG 295 (482)
Q Consensus 241 ~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~----~~~-~~~~~~~li~~~~~~g~--------------------~~~ 295 (482)
..++..+...+... |++++|+..+++..+.. ..+ ...++..+...+...|+ +++
T Consensus 87 ~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 87 AKASGNLGNTLKVL-GNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 45666677777777 88888888887766531 110 13356667777777777 777
Q ss_pred HHHHHHHhhcc---cCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HhhHHHHHHHHHhcCCHHH
Q 038748 296 AEFIWGAMVGR---IGFRP-DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGA-FPD----IQTYNILFEFLVKGRKLWE 366 (482)
Q Consensus 296 a~~~~~~~~~~---~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~g~~~~ 366 (482)
|...+....+. .+..+ ...++..+...|...|++++|...+++..+... .++ ...+..+...+...|++++
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 245 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 245 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 77777765421 11111 134566677777777788888777777654310 011 1256666677777777777
Q ss_pred HHHHHHHHHhCCCc----c-ChhhHHHHHHHHhcCCChHHHHHHHHHHHHc----CCCCC-hhhHHHHHHHHHhcCChhH
Q 038748 367 ASGLFNEMVKNENV----L-NHENCRAAVRVYMDSDDPYVAIKFWKYMIEN----HCSDL-SETGNLLVAGLCDMHMLPE 436 (482)
Q Consensus 367 a~~~~~~~~~~~~~----~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p~-~~~~~~li~~~~~~g~~~~ 436 (482)
|...+++..+.... + ...++..+...|...|++++|.+.++...+. +-.+. ..++..+...|...|++++
T Consensus 246 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 325 (406)
T 3sf4_A 246 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQ 325 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 77777776643111 1 1345666777777777777777777776642 11111 2456666677777777777
Q ss_pred HHHHHHHHHHcCCCCC-----HHHHHHHHHHHHHhccH
Q 038748 437 AVKYAKGMAEKGIQVT-----PFALSKLKQILIKARKE 469 (482)
Q Consensus 437 A~~~~~~m~~~~~~~~-----~~~~~~l~~~~~~~g~~ 469 (482)
|...+++..+..-... ..++..+...+...|+.
T Consensus 326 A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 326 AMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 7777777766543222 12344444444444443
No 57
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.56 E-value=2.1e-13 Score=127.85 Aligned_cols=171 Identities=12% Similarity=-0.023 Sum_probs=107.7
Q ss_pred CCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHhhCChhhHHHHHHHHHhc----CCCC-
Q 038748 98 KHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLS----LATFASVFSSYVVADRVKDAITTFDVMEQY----GCKH- 168 (482)
Q Consensus 98 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~- 168 (482)
......+......+...|++++|...|+++.+..+.+ ..++..+...+...|++++|...+++.... +..|
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 3455666777788888888888888888888876544 356777888888888888888888876542 1111
Q ss_pred CHhhHHHHHHHHHhcCChHhHHHHHHHhhCC--CCCC----HHHHHHHHHHHHhcCC--------------------HHH
Q 038748 169 DVFALNSLLSAICRDGKTIDAWQFLRVVDGR--IKPD----NDTYAILLEGWEKERD--------------------VAN 222 (482)
Q Consensus 169 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~----~~~~~~l~~~~~~~~~--------------------~~~ 222 (482)
...++..+...+...|++++|...+++.... ..++ ..++..+...|...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 2445677777788888888888877764320 0111 4466777777777777 666
Q ss_pred HHHHHHHhHHh---cCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHH
Q 038748 223 AKKTFGEMVIE---VGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMM 269 (482)
Q Consensus 223 a~~~~~~~~~~---~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~ 269 (482)
|...+++.... .+..|....++..+...+... |++++|++.+++..
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al 214 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLL-GNFRDAVIAHEQRL 214 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-TBHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHc-cCHHHHHHHHHHHH
Confidence 66666655421 111111223444455555555 55555555555544
No 58
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.55 E-value=4.5e-13 Score=125.89 Aligned_cols=131 Identities=8% Similarity=-0.115 Sum_probs=70.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCc-cC----hhhHHHHHHHHhcCCChHHHHHHHHHHHHcC--CCC---Chh
Q 038748 350 TYNILFEFLVKGRKLWEASGLFNEMVKNENV-LN----HENCRAAVRVYMDSDDPYVAIKFWKYMIENH--CSD---LSE 419 (482)
Q Consensus 350 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~p---~~~ 419 (482)
.+..+...+...|++++|..++++..+.... .+ ...+..+...|...|++++|.+.+++..+.. ... ...
T Consensus 225 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 304 (411)
T 4a1s_A 225 ACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQ 304 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4455555566666666666666655542111 01 1245556666666666666666666655321 000 124
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcC----C-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHh
Q 038748 420 TGNLLVAGLCDMHMLPEAVKYAKGMAEKG----I-QVTPFALSKLKQILIKARKEAVYEELLKKCK 480 (482)
Q Consensus 420 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 480 (482)
++..+...|...|++++|..++++..+.. . .....++..+..++.+.|++++|.+.+++..
T Consensus 305 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 370 (411)
T 4a1s_A 305 SCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHL 370 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 45556666666666666666666654321 0 0112355556666666666666666666543
No 59
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.55 E-value=3.3e-13 Score=122.81 Aligned_cols=267 Identities=10% Similarity=-0.045 Sum_probs=150.2
Q ss_pred HHHHHhcCCHHHHHHHHHHhHHhcCCCCCC----hhhHHHHHHHHHccCCChHHHHHHHHHHHHc----CCCC-CHHHHH
Q 038748 211 LEGWEKERDVANAKKTFGEMVIEVGWDPDN----VPAYDSYLITLLKGCDGIYETVNSLKRMMER----GCNP-GMTFFK 281 (482)
Q Consensus 211 ~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~----~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~ 281 (482)
...+...|++++|...|+++... .|++ ...+..+...+... |++++|.+.+++.... +..+ ...++.
T Consensus 12 g~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 87 (338)
T 3ro2_A 12 GERLCKSGDCRAGVSFFEAAVQV---GTEDLKTLSAIYSQLGNAYFYL-HDYAKALEYHHHDLTLARTIGDQLGEAKASG 87 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---CCSCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhh---CcccHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHhhcccccHHHHHHHH
Confidence 34444455555555555554432 2322 12344444444444 5555555555443321 1111 133445
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhcccCCCCC----HHHHHHHHHHHHhcCC--------------------HHHHHHHHH
Q 038748 282 LAFEECLTGQNLRGAEFIWGAMVGRIGFRPD----THMYNMMISLYCYSNE--------------------TGAAMKLLD 337 (482)
Q Consensus 282 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~--------------------~~~a~~~~~ 337 (482)
.+...+...|++++|...+.+..+...-.++ ..++..+...|...|+ +++|...++
T Consensus 88 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~ 167 (338)
T 3ro2_A 88 NLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYE 167 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHH
Confidence 5555556666666666666554321111111 2355556666666666 666666666
Q ss_pred HHHHC----CCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----ccChhhHHHHHHHHhcCCChHHHHHHHH
Q 038748 338 EMVYN----GAFP-DIQTYNILFEFLVKGRKLWEASGLFNEMVKNEN-----VLNHENCRAAVRVYMDSDDPYVAIKFWK 407 (482)
Q Consensus 338 ~m~~~----g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~~~~~~a~~~~~ 407 (482)
+..+. +..+ ....+..+...+...|++++|...+++..+... .....++..+...|...|++++|.+.++
T Consensus 168 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 247 (338)
T 3ro2_A 168 ENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYK 247 (338)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 54431 1111 123566666677777888888877777664311 1112356677777888888888888887
Q ss_pred HHHHc----CCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHHcC----CC-CCHHHHHHHHHHHHHhccHHHHHHHHH
Q 038748 408 YMIEN----HCSDL-SETGNLLVAGLCDMHMLPEAVKYAKGMAEKG----IQ-VTPFALSKLKQILIKARKEAVYEELLK 477 (482)
Q Consensus 408 ~m~~~----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~ 477 (482)
+..+. +..+. ..++..+...|...|++++|...+++..+.. -. ....++..+..++.+.|++++|.+.++
T Consensus 248 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 327 (338)
T 3ro2_A 248 KTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAE 327 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 76642 11111 3466677778888888888888888775431 11 113467778888888888888888888
Q ss_pred HHhh
Q 038748 478 KCKA 481 (482)
Q Consensus 478 ~m~~ 481 (482)
+..+
T Consensus 328 ~a~~ 331 (338)
T 3ro2_A 328 KHLE 331 (338)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 60
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.55 E-value=2.3e-13 Score=127.96 Aligned_cols=277 Identities=9% Similarity=-0.045 Sum_probs=155.3
Q ss_pred hhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHhhCChhhHHHHHHHHHhc----CC-CCCHhh
Q 038748 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSL----ATFASVFSSYVVADRVKDAITTFDVMEQY----GC-KHDVFA 172 (482)
Q Consensus 102 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~ 172 (482)
..+..+...+...|++++|+..|+++.+..+.+. .+|..+...|...|++++|...+++..+. +. .....+
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 3445566677788888888888888888765443 46777888888888888888888877653 11 123455
Q ss_pred HHHHHHHHHhcCChHhHHHHHHHhhC-----C-CCCCHHHHHHHHHHHHhcCC-----------------HHHHHHHHHH
Q 038748 173 LNSLLSAICRDGKTIDAWQFLRVVDG-----R-IKPDNDTYAILLEGWEKERD-----------------VANAKKTFGE 229 (482)
Q Consensus 173 ~~~ll~~~~~~g~~~~a~~~~~~~~~-----~-~~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~~ 229 (482)
+..+...|...|++++|...+++... + .+....++..+...|...|+ +++|...+++
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 67777777788888888887776432 1 12234466677777777777 6666666655
Q ss_pred hHHh---cCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHhhc
Q 038748 230 MVIE---VGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCN-PGMTFFKLAFEECLTGQNLRGAEFIWGAMVG 305 (482)
Q Consensus 230 ~~~~---~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 305 (482)
.... .+..+....++..+...+... |++++|++.+++..+.... .+.
T Consensus 209 al~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~---------------------------- 259 (411)
T 4a1s_A 209 NLKLMRDLGDRGAQGRACGNLGNTYYLL-GDFQAAIEHHQERLRIAREFGDR---------------------------- 259 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTCH----------------------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHHHhcCCc----------------------------
Confidence 4321 111111223444444555555 5555555555544331100 000
Q ss_pred ccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----C-CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-
Q 038748 306 RIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGA----F-PDIQTYNILFEFLVKGRKLWEASGLFNEMVKNEN- 379 (482)
Q Consensus 306 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~----~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~- 379 (482)
.....++..+...|...|++++|...+++..+... . ....++..+...+...|++++|..++++..+...
T Consensus 260 ----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 335 (411)
T 4a1s_A 260 ----AAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQE 335 (411)
T ss_dssp ----HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 00012444455555555555555555554433210 0 0123455555556666666666666665544210
Q ss_pred ----ccChhhHHHHHHHHhcCCChHHHHHHHHHHHH
Q 038748 380 ----VLNHENCRAAVRVYMDSDDPYVAIKFWKYMIE 411 (482)
Q Consensus 380 ----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 411 (482)
.....++..+..+|...|++++|.+.+++..+
T Consensus 336 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 336 LGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 11123555666666666777777766666655
No 61
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.54 E-value=7.3e-13 Score=125.61 Aligned_cols=343 Identities=10% Similarity=-0.019 Sum_probs=221.8
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCCh---hhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhc
Q 038748 107 VVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRV---KDAITTFDVMEQYGCKHDVFALNSLLSAICRD 183 (482)
Q Consensus 107 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 183 (482)
+...+.+.|++++|.++|++..+.+.++ ++..+...|...|+. ++|...|+...+. +...+..|...+...
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~~~--A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~ 82 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGYSE--AQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAK 82 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCT--GGGTCC--------------------------------CHHHHHHHHHTC
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCHH--HHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhC
Confidence 5667778899999999999998887433 455566666777888 8999999998863 556667777756555
Q ss_pred C-----ChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHhHHhcCCCCCChhhHHHHHHHHHccC
Q 038748 184 G-----KTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVAN---AKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255 (482)
Q Consensus 184 g-----~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 255 (482)
+ +.++|..+|++......+ ..+..|...|...+..+. +.+.+...... | +..+...+...+...
T Consensus 83 ~~~~~~~~~~A~~~~~~Aa~~g~~--~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~-g----~~~a~~~Lg~~y~~~- 154 (452)
T 3e4b_A 83 PGATEAEHHEAESLLKKAFANGEG--NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAA-G----YPEAGLAQVLLYRTQ- 154 (452)
T ss_dssp --CCHHHHHHHHHHHHHHHHTTCS--SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHH-T----CTTHHHHHHHHHHHH-
T ss_pred CCCCCcCHHHHHHHHHHHHHCCCH--HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHC-C----CHHHHHHHHHHHHcC-
Confidence 5 788999999985432222 377777777777665444 44444444322 2 344677777888777
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---ChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhc----CC
Q 038748 256 DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQ---NLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYS----NE 328 (482)
Q Consensus 256 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~----~~ 328 (482)
+.++++......+.+.-...+...+..+...|...| +.++|.+.|.... +.| .++...+..|...|... ++
T Consensus 155 ~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa-~~g-~~~a~~~~~Lg~~y~~g~~~~~d 232 (452)
T 3e4b_A 155 GTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGV-SRG-TVTAQRVDSVARVLGDATLGTPD 232 (452)
T ss_dssp TCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HTT-CSCHHHHHHHHHHHTCGGGSSCC
T ss_pred CCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHH-HCC-CHHHHHHHHHHHHHhCCCCCCCC
Confidence 766666555444433222233347788888898999 9999999999986 444 55666656677777654 79
Q ss_pred HHHHHHHHHHHHHCCCCCCHhhHHHHHHH-H--HhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCC-----ChH
Q 038748 329 TGAAMKLLDEMVYNGAFPDIQTYNILFEF-L--VKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSD-----DPY 400 (482)
Q Consensus 329 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~-~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-----~~~ 400 (482)
+++|+..|++.. .| +...+..+... + ...+++++|..+|++..+.| +...+..+...|. .| +++
T Consensus 233 ~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~ 304 (452)
T 3e4b_A 233 EKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAK 304 (452)
T ss_dssp HHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHH
T ss_pred HHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHH
Confidence 999999999987 32 44555555555 3 45899999999999999877 5667777777777 45 999
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----hccHHHH
Q 038748 401 VAIKFWKYMIENHCSDLSETGNLLVAGLCD----MHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIK----ARKEAVY 472 (482)
Q Consensus 401 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~g~~~~a 472 (482)
+|.+.|+... .| +...+..|...|.. ..++++|..+|++..+.|. ......|...|.. ..+.++|
T Consensus 305 ~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A 377 (452)
T 3e4b_A 305 AAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNA 377 (452)
T ss_dssp HHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHH
T ss_pred HHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHH
Confidence 9999999887 33 44666677766665 3489999999999988874 3334445444442 3477888
Q ss_pred HHHHHHHh
Q 038748 473 EELLKKCK 480 (482)
Q Consensus 473 ~~~~~~m~ 480 (482)
..++++..
T Consensus 378 ~~~~~~A~ 385 (452)
T 3e4b_A 378 YVFSQLAK 385 (452)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88877654
No 62
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.54 E-value=1.3e-11 Score=110.86 Aligned_cols=218 Identities=5% Similarity=-0.048 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-------hCCh-------hhHHHHHHHHHhc-CCCCCHhhHHHHHHHHHh
Q 038748 118 DAMWDAIKSMKKENVLSLATFASVFSSYVV-------ADRV-------KDAITTFDVMEQY-GCKHDVFALNSLLSAICR 182 (482)
Q Consensus 118 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~~-------~~~~-------~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~ 182 (482)
++|..+|++.....+.+...|..++..+.. .|++ ++|..+|++..+. . +-+...|..+...+.+
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~-p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL-KKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHh
Confidence 567777777777666677777777666653 3554 6666666666652 2 1234456666666666
Q ss_pred cCChHhHHHHHHHhhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHH-ccCCChHH
Q 038748 183 DGKTIDAWQFLRVVDGRIKPDND-TYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL-KGCDGIYE 260 (482)
Q Consensus 183 ~g~~~~a~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~-~~~~~~~~ 260 (482)
.|++++|.++|++.....+.+.. +|..+...+.+.|++++|..+|++..+ ..|.+...|........ .. |++++
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~---~~p~~~~~~~~~a~~~~~~~-~~~~~ 187 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE---DARTRHHVYVTAALMEYYCS-KDKSV 187 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT---STTCCTHHHHHHHHHHHHTS-CCHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHHc-CCHHH
Confidence 66666666666665442222333 566666666666666666666666542 23333333322222111 12 45555
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038748 261 TVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRP--DTHMYNMMISLYCYSNETGAAMKLLDE 338 (482)
Q Consensus 261 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~ 338 (482)
|.++|+...+.. +-+...+..++..+.+.|++++|..+|++.++...+.| ....|..++..+.+.|+.+.|..++++
T Consensus 188 A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 188 AFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 555555444421 12334444444444444444444444444432111222 233444444444444444444444444
Q ss_pred HHH
Q 038748 339 MVY 341 (482)
Q Consensus 339 m~~ 341 (482)
+.+
T Consensus 267 a~~ 269 (308)
T 2ond_A 267 RFT 269 (308)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 63
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.53 E-value=2.1e-12 Score=120.16 Aligned_cols=228 Identities=6% Similarity=-0.123 Sum_probs=130.3
Q ss_pred HHHHccCCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCC-----CHHHHHH
Q 038748 249 ITLLKGCDGIYETVNSLKRMMER----GCNP-GMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRP-----DTHMYNM 318 (482)
Q Consensus 249 ~~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~~ 318 (482)
..+... |++++|++.+++..+. +-.+ ...++..+...+...|+++.|...+.+..+-..-.+ ...+++.
T Consensus 111 ~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 189 (383)
T 3ulq_A 111 MYELDQ-REYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSL 189 (383)
T ss_dssp HHHHHT-TCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHH
T ss_pred HHHHHh-cCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 334444 6666666666665542 1111 234555666666666666666666666542211111 1345666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCccChhhHHH
Q 038748 319 MISLYCYSNETGAAMKLLDEMVYNGAF-PD----IQTYNILFEFLVKGRKLWEASGLFNEMVK-----NENVLNHENCRA 388 (482)
Q Consensus 319 li~~~~~~~~~~~a~~~~~~m~~~g~~-p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~~ 388 (482)
+...|...|++++|+..|++..+.... ++ ..++..+...|...|++++|...+++..+ ........++..
T Consensus 190 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 269 (383)
T 3ulq_A 190 FATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFL 269 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Confidence 666777777777777777666542100 11 13566666777777777777777777665 221223455667
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHc----CCCCChhhHHHHHHHHHhcCC---hhHHHHHHHHHHHcCCCCC-HHHHHHHH
Q 038748 389 AVRVYMDSDDPYVAIKFWKYMIEN----HCSDLSETGNLLVAGLCDMHM---LPEAVKYAKGMAEKGIQVT-PFALSKLK 460 (482)
Q Consensus 389 li~~~~~~~~~~~a~~~~~~m~~~----~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~~~-~~~~~~l~ 460 (482)
+..+|.+.|++++|.+.+++..+. +-+.....+..+...|...|+ +++|+.++++. +..|+ ...+..+.
T Consensus 270 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la 346 (383)
T 3ulq_A 270 ITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVA 346 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHH
Confidence 777777777777777777766532 111111234556666667777 55666666554 22222 24566677
Q ss_pred HHHHHhccHHHHHHHHHHHh
Q 038748 461 QILIKARKEAVYEELLKKCK 480 (482)
Q Consensus 461 ~~~~~~g~~~~a~~~~~~m~ 480 (482)
..|.+.|++++|.+.+++..
T Consensus 347 ~~y~~~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 347 KYYHERKNFQKASAYFLKVE 366 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHH
Confidence 77777777777777777654
No 64
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.52 E-value=4.3e-13 Score=122.05 Aligned_cols=276 Identities=12% Similarity=0.016 Sum_probs=146.2
Q ss_pred hHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHhhCChhhHHHHHHHHHhc----CCCC-CHhhH
Q 038748 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVLS----LATFASVFSSYVVADRVKDAITTFDVMEQY----GCKH-DVFAL 173 (482)
Q Consensus 103 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~ 173 (482)
.+......+...|++++|...|+++.+..+.+ ...+..+...+...|++++|.+.+++..+. +..+ ...++
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 34445566677788888888888777765544 356667777777778888887777765442 1111 23456
Q ss_pred HHHHHHHHhcCChHhHHHHHHHhhCC--CCCC----HHHHHHHHHHHHhcCC--------------------HHHHHHHH
Q 038748 174 NSLLSAICRDGKTIDAWQFLRVVDGR--IKPD----NDTYAILLEGWEKERD--------------------VANAKKTF 227 (482)
Q Consensus 174 ~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~----~~~~~~l~~~~~~~~~--------------------~~~a~~~~ 227 (482)
..+...+...|++++|...+++.... ..++ ..++..+...|...|+ +++|...+
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 166 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY 166 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence 66667777777777777777664220 0111 3356666666666676 66666666
Q ss_pred HHhHHh---cCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 038748 228 GEMVIE---VGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMV 304 (482)
Q Consensus 228 ~~~~~~---~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 304 (482)
++.... .+..+....++..+...+... |++++|.+.+++..+..
T Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~-------------------------------- 213 (338)
T 3ro2_A 167 EENLSLVTALGDRAAQGRAFGNLGNTHYLL-GNFRDAVIAHEQRLLIA-------------------------------- 213 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHH--------------------------------
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHH--------------------------------
Confidence 554321 111111122344444444444 55555555555443210
Q ss_pred cccCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 038748 305 GRIGF-RPDTHMYNMMISLYCYSNETGAAMKLLDEMVYN----GAFP-DIQTYNILFEFLVKGRKLWEASGLFNEMVKNE 378 (482)
Q Consensus 305 ~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 378 (482)
...+. .....++..+...|...|++++|...+++..+. +..+ ...++..+...+...|++++|...+++..+..
T Consensus 214 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 293 (338)
T 3ro2_A 214 KEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 293 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 00000 001224444555555555555555555544331 0000 02344555555666666666666665554321
Q ss_pred C-----ccChhhHHHHHHHHhcCCChHHHHHHHHHHHH
Q 038748 379 N-----VLNHENCRAAVRVYMDSDDPYVAIKFWKYMIE 411 (482)
Q Consensus 379 ~-----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 411 (482)
. .....++..+...|...|++++|.+.+++..+
T Consensus 294 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 294 QELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 0 11123455566666666666666666666654
No 65
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.52 E-value=3e-10 Score=111.50 Aligned_cols=418 Identities=8% Similarity=-0.020 Sum_probs=275.0
Q ss_pred HHHHhhhcCCCCCHHHHHHHHHh--hcCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCC---cHHHHHHHHHHH
Q 038748 54 VEDVLDKTLIRVSQETVEQVLKF--SYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCL---FDAMWDAIKSMK 128 (482)
Q Consensus 54 ~~~~l~~~~~~~~~~~~~~ll~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~ 128 (482)
+++.+... +.+......++.. ..+..+.+..+|+.+.. .++.+...|...+..-.+.++ ++.+..+|++..
T Consensus 55 lE~~l~~n--p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~--~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal 130 (679)
T 4e6h_A 55 LNDMIEEQ--PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHD--RFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCL 130 (679)
T ss_dssp HHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHT
T ss_pred HHHHHHHC--cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHH
Confidence 44444443 4566677777773 35678888888888887 567778888888888888888 889999999888
Q ss_pred hcCC--CCHHHHHHHHHHHHhhCCh--------hhHHHHHHHHHhc-CC-CCC-HhhHHHHHHHHH---------hcCCh
Q 038748 129 KENV--LSLATFASVFSSYVVADRV--------KDAITTFDVMEQY-GC-KHD-VFALNSLLSAIC---------RDGKT 186 (482)
Q Consensus 129 ~~~~--~~~~~~~~li~~~~~~~~~--------~~a~~~~~~~~~~-~~-~~~-~~~~~~ll~~~~---------~~g~~ 186 (482)
...+ ++...|...+....+.++. +.+.++|+..... |. .++ ...|...+.... ..+++
T Consensus 131 ~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~ 210 (679)
T 4e6h_A 131 SKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRV 210 (679)
T ss_dssp CSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHH
T ss_pred HhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHH
Confidence 8764 7888888887776666554 3344777766553 65 443 456777666543 23456
Q ss_pred HhHHHHHHHhhCCCCC--CHHHHHHHHHHHHhcCC-------------HHHHHHHHHHhHHh-cCCC---CCC-------
Q 038748 187 IDAWQFLRVVDGRIKP--DNDTYAILLEGWEKERD-------------VANAKKTFGEMVIE-VGWD---PDN------- 240 (482)
Q Consensus 187 ~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~-------------~~~a~~~~~~~~~~-~~~~---p~~------- 240 (482)
+.+..+|+.... ++. -..+|......-...+. ++.|...+.++..- .++. |..
T Consensus 211 ~~~R~iy~raL~-iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~ 289 (679)
T 4e6h_A 211 QYIRKLYKTLLC-QPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATES 289 (679)
T ss_dssp HHHHHHHHHHTT-SCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTT
T ss_pred HHHHHHHHHHHh-CccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhc
Confidence 778888888654 222 23445544333222222 12233333332211 0111 110
Q ss_pred ------------hhhHHHHHHHHHccCC-C------hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHH-HHH
Q 038748 241 ------------VPAYDSYLITLLKGCD-G------IYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAE-FIW 300 (482)
Q Consensus 241 ------------~~~~~~l~~~~~~~~~-~------~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~-~~~ 300 (482)
...|...+..--.. + . .+.+..+|++.... ++-....|...+..+...|+.++|. ++|
T Consensus 290 ~~p~~~~~~~~ql~lW~~yi~fEk~~-~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il 367 (679)
T 4e6h_A 290 NLPKPNEYDVQQLLIWLEWIRWESDN-KLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYL 367 (679)
T ss_dssp TSCCTTCCCHHHHHHHHHHHHHHHTC-TTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHH
T ss_pred cCCCCchhHHHHHHHHHHHHHHHHhC-CccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 12233333222221 1 1 22345667776664 3446677777788888889999996 999
Q ss_pred HHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---------CCC------------HhhHHHHHHHHH
Q 038748 301 GAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGA---------FPD------------IQTYNILFEFLV 359 (482)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~---------~p~------------~~~~~~ll~~~~ 359 (482)
+..+. .++.+...|-..+...-+.|++++|.++|+.+.+... .|+ ...|...+....
T Consensus 368 ~rAi~--~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~er 445 (679)
T 4e6h_A 368 KLGQQ--CIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMK 445 (679)
T ss_dssp HHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH--hCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHH
Confidence 99873 3345666788888888999999999999999886410 132 235777777778
Q ss_pred hcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcC-CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHH
Q 038748 360 KGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDS-DDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAV 438 (482)
Q Consensus 360 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 438 (482)
+.|..+.|..+|....+.........|...+..-.+. ++++.|.++|+...+. ++-+...|...+......|+.+.|.
T Consensus 446 R~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR 524 (679)
T 4e6h_A 446 RIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVK 524 (679)
T ss_dssp HHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHH
Confidence 8899999999999998862222334444443333344 4599999999999876 3345567778888888899999999
Q ss_pred HHHHHHHHcCCCC--CHHHHHHHHHHHHHhccHHHHHHHHHHHhh
Q 038748 439 KYAKGMAEKGIQV--TPFALSKLKQILIKARKEAVYEELLKKCKA 481 (482)
Q Consensus 439 ~~~~~m~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 481 (482)
.+|++.......+ ....|...+..-.+.|+.+.+..+.+++.+
T Consensus 525 ~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~ 569 (679)
T 4e6h_A 525 SLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFE 569 (679)
T ss_dssp HHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999998765322 346788888888899999999999999864
No 66
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.51 E-value=7.1e-12 Score=116.52 Aligned_cols=233 Identities=9% Similarity=-0.045 Sum_probs=154.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHhcCCCCC---ChhhHHHHHHHHHccCCChHHHHHHHHHHHHcC--C----CCCHHHH
Q 038748 210 LLEGWEKERDVANAKKTFGEMVIEVGWDPD---NVPAYDSYLITLLKGCDGIYETVNSLKRMMERG--C----NPGMTFF 280 (482)
Q Consensus 210 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~--~----~~~~~~~ 280 (482)
....+...|++++|...|++......-.++ ...++..+...+... |++++|++.+++..+.- . .....++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~-~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 187 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYM-KQTYFSMDYARQAYEIYKEHEAYNIRLLQCH 187 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHTCSTTHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCccchHHHHHHH
Confidence 445556667777777777766532111222 234566666666666 77777777777665421 1 0113466
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhhcccCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHhhH
Q 038748 281 KLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD----THMYNMMISLYCYSNETGAAMKLLDEMVYN----GA-FPDIQTY 351 (482)
Q Consensus 281 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~-~p~~~~~ 351 (482)
..+...|...|++++|...+.+.++...-..+ ..++..+...|...|++++|+..|++..+. +. .....++
T Consensus 188 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 267 (383)
T 3ulq_A 188 SLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAY 267 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHH
Confidence 77778888888888888888877522111112 246777888888999999999988887762 22 2335667
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCC----CccChhhHHHHHHHHhcCCC---hHHHHHHHHHHHHcCCCCCh-hhHHH
Q 038748 352 NILFEFLVKGRKLWEASGLFNEMVKNE----NVLNHENCRAAVRVYMDSDD---PYVAIKFWKYMIENHCSDLS-ETGNL 423 (482)
Q Consensus 352 ~~ll~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~~~~p~~-~~~~~ 423 (482)
..+...+...|++++|...+++..+.. -......+..+...|...|+ +++|..+++.. +..|+. ..+..
T Consensus 268 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~ 344 (383)
T 3ulq_A 268 FLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAID 344 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHH
Confidence 888888889999999999988877541 11122335667788888888 66666666654 333332 46677
Q ss_pred HHHHHHhcCChhHHHHHHHHHHH
Q 038748 424 LVAGLCDMHMLPEAVKYAKGMAE 446 (482)
Q Consensus 424 li~~~~~~g~~~~A~~~~~~m~~ 446 (482)
+...|...|++++|...+++..+
T Consensus 345 la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 345 VAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 88889999999999999998754
No 67
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.50 E-value=1.6e-11 Score=110.40 Aligned_cols=217 Identities=9% Similarity=-0.038 Sum_probs=180.4
Q ss_pred hhHhHHhhhhhcCCCCCCCHhhHHHHHHHHh-------hCCCc-------HHHHHHHHHHHh-cCCCCHHHHHHHHHHHH
Q 038748 82 GPAVKFFRWSAYQLNDKHSPYAWNLVVDLLG-------KNCLF-------DAMWDAIKSMKK-ENVLSLATFASVFSSYV 146 (482)
Q Consensus 82 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~-------~~~~~-------~~a~~~~~~~~~-~~~~~~~~~~~li~~~~ 146 (482)
+.|..+|+.+.. ..+.++..|..++..+. +.|++ ++|..+|++... ..+.+...|..++..+.
T Consensus 33 ~~a~~~~~~al~--~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLL--VLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHH--HHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 577788887776 45667888988888876 45886 899999999999 46778889999999999
Q ss_pred hhCChhhHHHHHHHHHhcCCCCC-Hh-hHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHH-hcCCHHHH
Q 038748 147 VADRVKDAITTFDVMEQYGCKHD-VF-ALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWE-KERDVANA 223 (482)
Q Consensus 147 ~~~~~~~a~~~~~~~~~~~~~~~-~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a 223 (482)
+.|++++|.++|++..+. .|+ .. .|..+...+.+.|++++|..+|++.....+.+...|........ ..|++++|
T Consensus 111 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp HTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred hcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999985 343 33 79999999999999999999999977655566666665544433 36999999
Q ss_pred HHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcC-CCC--CHHHHHHHHHHHHhcCChhHHHHHH
Q 038748 224 KKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERG-CNP--GMTFFKLAFEECLTGQNLRGAEFIW 300 (482)
Q Consensus 224 ~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~-~~~--~~~~~~~li~~~~~~g~~~~a~~~~ 300 (482)
..+|++..+. .|++...|..++..+... |++++|..+|++..... ++| ....|..++....+.|+.+.|..++
T Consensus 189 ~~~~~~al~~---~p~~~~~~~~~~~~~~~~-g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~ 264 (308)
T 2ond_A 189 FKIFELGLKK---YGDIPEYVLAYIDYLSHL-NEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVE 264 (308)
T ss_dssp HHHHHHHHHH---HTTCHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHh---CCCcHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999854 677888999999999998 99999999999999863 455 3667888899999999999999999
Q ss_pred HHhhcc
Q 038748 301 GAMVGR 306 (482)
Q Consensus 301 ~~~~~~ 306 (482)
+++.+.
T Consensus 265 ~~a~~~ 270 (308)
T 2ond_A 265 KRRFTA 270 (308)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998733
No 68
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.50 E-value=5.6e-12 Score=103.93 Aligned_cols=167 Identities=17% Similarity=0.089 Sum_probs=129.2
Q ss_pred CHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHH
Q 038748 100 SPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSA 179 (482)
Q Consensus 100 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 179 (482)
++..|..+...+...|++++|++.|++..+.++.+..++..+..++.+.|++++|...+........ .+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-TSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-hhHHHHHHHHHH
Confidence 5667888888888888888888888888888777778888888888888888888888888777543 355666777777
Q ss_pred HHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChH
Q 038748 180 ICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIY 259 (482)
Q Consensus 180 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~ 259 (482)
+...++++.+.+.+.......+.+...+..+..+|.+.|++++|+..|++..+. .|++..++..+...+... |+++
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~lg~~~~~~-g~~~ 158 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI---KPGFIRAYQSIGLAYEGK-GLRD 158 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHT-TCHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh---cchhhhHHHHHHHHHHHC-CCHH
Confidence 778888888888887765555667777888888888888888888888877643 677777788888888877 8888
Q ss_pred HHHHHHHHHHHc
Q 038748 260 ETVNSLKRMMER 271 (482)
Q Consensus 260 ~a~~~~~~m~~~ 271 (482)
+|++.|++..+.
T Consensus 159 ~A~~~~~~al~~ 170 (184)
T 3vtx_A 159 EAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC
Confidence 888888877763
No 69
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.47 E-value=9.1e-10 Score=108.14 Aligned_cols=391 Identities=8% Similarity=-0.014 Sum_probs=264.5
Q ss_pred CchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCC---hhhHHH
Q 038748 80 HPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADR---VKDAIT 156 (482)
Q Consensus 80 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---~~~a~~ 156 (482)
.+.+....|+.... ..+.|..+|..++..+.+.+.++.+..+|+++....+.+...|...+..-.+.|+ ++.+..
T Consensus 47 ~~~d~i~~lE~~l~--~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~ 124 (679)
T 4e6h_A 47 DESDVIGKLNDMIE--EQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEP 124 (679)
T ss_dssp CCSCHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred CCHHHHHHHHHHHH--HCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence 45556656665555 4567999999999999999999999999999999988889999999999889899 999999
Q ss_pred HHHHHHhcC-CCCCHhhHHHHHHHHHhcCCh--------HhHHHHHHHhhC--CC-CC-CHHHHHHHHHHHHh-------
Q 038748 157 TFDVMEQYG-CKHDVFALNSLLSAICRDGKT--------IDAWQFLRVVDG--RI-KP-DNDTYAILLEGWEK------- 216 (482)
Q Consensus 157 ~~~~~~~~~-~~~~~~~~~~ll~~~~~~g~~--------~~a~~~~~~~~~--~~-~~-~~~~~~~l~~~~~~------- 216 (482)
+|+...... ..|++..|..-+.-..+.++. +.+.++|+.... |. .+ +...|...+.....
T Consensus 125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ 204 (679)
T 4e6h_A 125 VLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKF 204 (679)
T ss_dssp HHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcH
Confidence 999998863 247888888888776666554 334467777432 44 34 56788888876543
Q ss_pred --cCCHHHHHHHHHHhHHhcCCCCCC-h-hhHH---HHHHHHHccC---------CChHHHHHHHHHHHH--cCCC----
Q 038748 217 --ERDVANAKKTFGEMVIEVGWDPDN-V-PAYD---SYLITLLKGC---------DGIYETVNSLKRMME--RGCN---- 274 (482)
Q Consensus 217 --~~~~~~a~~~~~~~~~~~~~~p~~-~-~~~~---~l~~~~~~~~---------~~~~~a~~~~~~m~~--~~~~---- 274 (482)
.++++.+..+|+..+. .|.. . ..|. .+-..+.... ..++.|...+.++.. .++.
T Consensus 205 eeq~~~~~~R~iy~raL~----iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p 280 (679)
T 4e6h_A 205 EEQQRVQYIRKLYKTLLC----QPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLP 280 (679)
T ss_dssp HHHHHHHHHHHHHHHHTT----SCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCC
T ss_pred HHHhHHHHHHHHHHHHHh----CccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccc
Confidence 4467888999998873 3421 1 2222 2222210000 012223334433322 1111
Q ss_pred -----------C-----C---HHHHHHHHHHHHhcC-------ChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCC
Q 038748 275 -----------P-----G---MTFFKLAFEECLTGQ-------NLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNE 328 (482)
Q Consensus 275 -----------~-----~---~~~~~~li~~~~~~g-------~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 328 (482)
| + ...|...+..--..+ ..+.+..+|++.+... +-....|...+..+...|+
T Consensus 281 ~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~--p~~~~lW~~ya~~~~~~~~ 358 (679)
T 4e6h_A 281 ITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV--CFAPEIWFNMANYQGEKNT 358 (679)
T ss_dssp SSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT--TTCHHHHHHHHHHHHHHSC
T ss_pred cccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHhcCc
Confidence 1 0 123444443332222 1234556788876433 4467788888888888899
Q ss_pred HHHHH-HHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---------ccC------------hhhH
Q 038748 329 TGAAM-KLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNEN---------VLN------------HENC 386 (482)
Q Consensus 329 ~~~a~-~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~---------~~~------------~~~~ 386 (482)
.++|. .+|+..... ++.+...|-..+....+.|++++|.++|+.+++... .|+ ..+|
T Consensus 359 ~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vW 437 (679)
T 4e6h_A 359 DSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVY 437 (679)
T ss_dssp CTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHH
Confidence 99997 999999874 333555566777888889999999999999886410 131 2367
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHc-CCCCChhhHHHHHHHHHhc-CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 038748 387 RAAVRVYMDSDDPYVAIKFWKYMIEN-HCSDLSETGNLLVAGLCDM-HMLPEAVKYAKGMAEKGIQVTPFALSKLKQILI 464 (482)
Q Consensus 387 ~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~ 464 (482)
...++...+.|+.+.|.++|....+. +. .....|-..+..-.+. ++.+.|.++|+...+. ..-+...+...+....
T Consensus 438 i~y~~~erR~~~l~~AR~vf~~A~~~~~~-~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~ 515 (679)
T 4e6h_A 438 CVYMNTMKRIQGLAASRKIFGKCRRLKKL-VTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLI 515 (679)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHTGGG-SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHH
Confidence 77888888889999999999999875 21 1223343332222333 5599999999999876 3346667778888888
Q ss_pred HhccHHHHHHHHHHHhh
Q 038748 465 KARKEAVYEELLKKCKA 481 (482)
Q Consensus 465 ~~g~~~~a~~~~~~m~~ 481 (482)
..|+.+.|..+|++..+
T Consensus 516 ~~~~~~~AR~lferal~ 532 (679)
T 4e6h_A 516 YVNEESQVKSLFESSID 532 (679)
T ss_dssp HHTCHHHHHHHHHHHTT
T ss_pred hCCCHHHHHHHHHHHHH
Confidence 99999999999998764
No 70
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.46 E-value=4e-12 Score=121.33 Aligned_cols=212 Identities=10% Similarity=-0.068 Sum_probs=146.3
Q ss_pred chhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCc-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHH
Q 038748 81 PGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLF-DAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFD 159 (482)
Q Consensus 81 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 159 (482)
.+.++..++.... ..+.+...|..+...+...|++ ++|++.|++..+..+.+..+|..+..+|...|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~--~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLG--SAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHT--TCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhc--cCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3455555554443 3445677777777777778888 888888888777777677777778888888888888888887
Q ss_pred HHHhcCCCCCHhhHHHHHHHHHhc---------CChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhc--------CCHHH
Q 038748 160 VMEQYGCKHDVFALNSLLSAICRD---------GKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKE--------RDVAN 222 (482)
Q Consensus 160 ~~~~~~~~~~~~~~~~ll~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~ 222 (482)
...+.. |+...+..+..++... |++++|.+.|++.....+.+...|..+..+|... |++++
T Consensus 162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 777653 5567777777777777 7777777777775544455677777777777777 77777
Q ss_pred HHHHHHHhHHhcCCCC---CChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 038748 223 AKKTFGEMVIEVGWDP---DNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFI 299 (482)
Q Consensus 223 a~~~~~~~~~~~~~~p---~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 299 (482)
|+..|++.... .| ++..+|..+...+... |++++|++.|++..+.. +-+...+..+..++...|++++|.+.
T Consensus 240 A~~~~~~al~~---~p~~~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 240 ALSAYAQAEKV---DRKASSNPDLHLNRATLHKYE-ESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp HHHHHHHHHHH---CGGGGGCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh---CCCcccCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777643 45 5666777777777777 77777777777766643 22344566666666666666666654
Q ss_pred HH
Q 038748 300 WG 301 (482)
Q Consensus 300 ~~ 301 (482)
+.
T Consensus 315 ~~ 316 (474)
T 4abn_A 315 KG 316 (474)
T ss_dssp TT
T ss_pred hc
Confidence 43
No 71
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.45 E-value=7e-13 Score=119.33 Aligned_cols=174 Identities=11% Similarity=-0.004 Sum_probs=85.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcC-----CCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHc-----
Q 038748 202 PDNDTYAILLEGWEKERDVANAKKTFGEMVIEVG-----WDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMER----- 271 (482)
Q Consensus 202 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~----- 271 (482)
.+..++..+...+...|++++|..+|+++..... -.|....++..+...+... |++++|.+.+++....
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQ-NKYKDAANLLNDALAIREKTL 103 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHh
Confidence 3455666777777777777777777777764200 1333344555666666666 6666666666665542
Q ss_pred -CC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccc-----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-
Q 038748 272 -GC-NPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRI-----GF-RPDTHMYNMMISLYCYSNETGAAMKLLDEMVYN- 342 (482)
Q Consensus 272 -~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-----~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~- 342 (482)
+. +....++..+...+...|++++|...+.++++.. +. ......+..+...|...|++++|+.+|+++.+.
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 183 (311)
T 3nf1_A 104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 183 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 11 1123344455555555555555555555554211 11 112233444444455555555555555444432
Q ss_pred -----CCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038748 343 -----GAFP-DIQTYNILFEFLVKGRKLWEASGLFNEMVK 376 (482)
Q Consensus 343 -----g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 376 (482)
+..| ...++..+...+...|++++|..+++++.+
T Consensus 184 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 184 QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1111 112334444444444444444444444443
No 72
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.44 E-value=9.7e-13 Score=118.39 Aligned_cols=172 Identities=15% Similarity=0.033 Sum_probs=89.5
Q ss_pred CHHHHHHHHHHHHhhCChhhHHHHHHHHHhc-------CCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCC-------
Q 038748 134 SLATFASVFSSYVVADRVKDAITTFDVMEQY-------GCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR------- 199 (482)
Q Consensus 134 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------- 199 (482)
...++..+...+...|++++|..+|+++.+. .......++..+...+...|++++|...+++....
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3455666666666667777777766666552 11223344555555555666666666555543210
Q ss_pred -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhc-----CCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCC
Q 038748 200 -IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEV-----GWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGC 273 (482)
Q Consensus 200 -~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~ 273 (482)
.+....++..+...|...|++++|...+++..... +..|.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~---------------------------------- 151 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPD---------------------------------- 151 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHH----------------------------------
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChH----------------------------------
Confidence 11123344444444555555555555554444221 11121
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccc-----C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038748 274 NPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRI-----G-FRPDTHMYNMMISLYCYSNETGAAMKLLDEMVY 341 (482)
Q Consensus 274 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-----~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 341 (482)
....+..+...+...|++++|.++++.+.+.. + ......++..+...|...|++++|...++++.+
T Consensus 152 --~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 152 --VAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp --HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 23344455555556666666666665554210 1 111234566677777777777777777777665
No 73
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.43 E-value=1.2e-10 Score=108.07 Aligned_cols=225 Identities=8% Similarity=-0.050 Sum_probs=136.5
Q ss_pred HHccCCChHHHHHHHHHHHHcCC-CC----CHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCC-----CHHHHHHHH
Q 038748 251 LLKGCDGIYETVNSLKRMMERGC-NP----GMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRP-----DTHMYNMMI 320 (482)
Q Consensus 251 ~~~~~~~~~~a~~~~~~m~~~~~-~~----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~~li 320 (482)
+... |++++|+..|++..+... .+ ...++..+...|...|+++.|...+.+..+...-.+ ...+++.+.
T Consensus 111 ~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 189 (378)
T 3q15_A 111 EFDQ-KEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA 189 (378)
T ss_dssp HHHT-TCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHH-CCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence 3445 777777777776654310 01 134566666677777777777777766542211111 134566677
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC----CCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCccChhhHHHHH
Q 038748 321 SLYCYSNETGAAMKLLDEMVYN----GAFP-DIQTYNILFEFLVKGRKLWEASGLFNEMVK-----NENVLNHENCRAAV 390 (482)
Q Consensus 321 ~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~~li 390 (482)
..|...|++++|.+.|++..+. |..+ ...++..+...|...|++++|...+++..+ .... ...++..+.
T Consensus 190 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~la 268 (378)
T 3q15_A 190 GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVLFGLS 268 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHHHHHH
Confidence 7777777777777777766542 1111 123566667777777888888888777766 3333 255667777
Q ss_pred HHHhcCCChHHHHHHHHHHHHcCC----CCChhhHHHHHHHHHhcCC---hhHHHHHHHHHHHcCCCCC-HHHHHHHHHH
Q 038748 391 RVYMDSDDPYVAIKFWKYMIENHC----SDLSETGNLLVAGLCDMHM---LPEAVKYAKGMAEKGIQVT-PFALSKLKQI 462 (482)
Q Consensus 391 ~~~~~~~~~~~a~~~~~~m~~~~~----~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~~~-~~~~~~l~~~ 462 (482)
.+|.+.|++++|.+.+++..+..- ......+..+...|...|+ +++|+.++++ .+..++ ...+..+...
T Consensus 269 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~ 345 (378)
T 3q15_A 269 WTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAV 345 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHH
Confidence 778888888888888877765321 1112344555555666666 6666666665 222222 2455667777
Q ss_pred HHHhccHHHHHHHHHHHh
Q 038748 463 LIKARKEAVYEELLKKCK 480 (482)
Q Consensus 463 ~~~~g~~~~a~~~~~~m~ 480 (482)
|.+.|++++|.+.+++..
T Consensus 346 y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 346 FESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHH
Confidence 888888888888777654
No 74
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.42 E-value=3e-11 Score=99.55 Aligned_cols=165 Identities=10% Similarity=-0.030 Sum_probs=99.4
Q ss_pred CHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHH
Q 038748 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEG 213 (482)
Q Consensus 134 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 213 (482)
+..+|..+...|...|++++|++.|++..+... -+..++..+..++.+.|++++|...+.......+.+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADP-NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 455666666667777777777777776666542 2455666666666666666666666666544445555666666666
Q ss_pred HHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 038748 214 WEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNL 293 (482)
Q Consensus 214 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 293 (482)
+...++++.|...+.+... ..|++..++..+...+... |++++|++.|++..+.. +.+..++..+..++.+.|++
T Consensus 83 ~~~~~~~~~a~~~~~~a~~---~~~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIA---LNTVYADAYYKLGLVYDSM-GEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLR 157 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHcCCHHHHHHHHHHHHH---hCccchHHHHHHHHHHHHh-CCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCH
Confidence 6666666666666666553 2455555566666666666 66666666666655542 22344555555555556666
Q ss_pred hHHHHHHHHhh
Q 038748 294 RGAEFIWGAMV 304 (482)
Q Consensus 294 ~~a~~~~~~~~ 304 (482)
++|.+.|++.+
T Consensus 158 ~~A~~~~~~al 168 (184)
T 3vtx_A 158 DEAVKYFKKAL 168 (184)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666655554
No 75
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.42 E-value=8.8e-12 Score=118.98 Aligned_cols=212 Identities=8% Similarity=-0.063 Sum_probs=138.8
Q ss_pred hHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHH
Q 038748 186 TIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDV-ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNS 264 (482)
Q Consensus 186 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~ 264 (482)
++++.+.++......+.+...+..+..+|...|++ ++|+..|++..+. .|++..+|..+...+... |++++|++.
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~-g~~~~A~~~ 159 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL---EPELVEAWNQLGEVYWKK-GDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHH-TCHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 45555556655554555677777777777777777 7777777777643 566677777777777777 777777777
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhc---------CChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhc--------C
Q 038748 265 LKRMMERGCNPGMTFFKLAFEECLTG---------QNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYS--------N 327 (482)
Q Consensus 265 ~~~m~~~~~~~~~~~~~~li~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------~ 327 (482)
|++..+.. |+...+..+...+... |++++|.+.|++.++.. +.+...|..+..+|... |
T Consensus 160 ~~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~~~~g 235 (474)
T 4abn_A 160 FSGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD--VLDGRSWYILGNAYLSLYFNTGQNPK 235 (474)
T ss_dssp HHHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHhhccccc
Confidence 77776643 5556666677777777 77777777777776321 23466667777777666 6
Q ss_pred CHHHHHHHHHHHHHCCCC--CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHH
Q 038748 328 ETGAAMKLLDEMVYNGAF--PDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKF 405 (482)
Q Consensus 328 ~~~~a~~~~~~m~~~g~~--p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 405 (482)
++++|+..|++..+.... -+...|..+..+|...|++++|...|++..+.... +...+..+..++...|++++|.+.
T Consensus 236 ~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 236 ISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp HHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777776664210 25566666666777777777777777776664322 344555666666666666666654
Q ss_pred H
Q 038748 406 W 406 (482)
Q Consensus 406 ~ 406 (482)
+
T Consensus 315 ~ 315 (474)
T 4abn_A 315 K 315 (474)
T ss_dssp T
T ss_pred h
Confidence 4
No 76
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.39 E-value=4.3e-10 Score=104.23 Aligned_cols=232 Identities=9% Similarity=-0.076 Sum_probs=155.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHhcCCCCC---ChhhHHHHHHHHHccCCChHHHHHHHHHHHHc----CC-CC-CHHHH
Q 038748 210 LLEGWEKERDVANAKKTFGEMVIEVGWDPD---NVPAYDSYLITLLKGCDGIYETVNSLKRMMER----GC-NP-GMTFF 280 (482)
Q Consensus 210 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~----~~-~~-~~~~~ 280 (482)
....+...|++++|...|++......-.++ ...++..+...+... |+++.|+..+++..+. +. .+ ...++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~-~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHM-KQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 344556677777777777776532111121 234566667777777 7788777777766542 11 11 24566
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhhcccCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHhhH
Q 038748 281 KLAFEECLTGQNLRGAEFIWGAMVGRIGFRP----DTHMYNMMISLYCYSNETGAAMKLLDEMVY-----NGAFPDIQTY 351 (482)
Q Consensus 281 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~g~~p~~~~~ 351 (482)
..+...|...|++++|.+.|.+.++...-.. ...++..+...|...|++++|+..|++..+ .... ...++
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~ 264 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVL 264 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHH
Confidence 7777888888888888888887753211111 234677788888899999999999988876 3222 35677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCC----ccChhhHHHHHHHHhcCCC---hHHHHHHHHHHHHcCCCCCh-hhHHH
Q 038748 352 NILFEFLVKGRKLWEASGLFNEMVKNEN----VLNHENCRAAVRVYMDSDD---PYVAIKFWKYMIENHCSDLS-ETGNL 423 (482)
Q Consensus 352 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~~~~p~~-~~~~~ 423 (482)
..+...+.+.|++++|..++++..+... ......+..+...|...++ +.+|...++. .+..|+. ..+..
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~ 341 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARS 341 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHH
Confidence 7888889999999999999998876421 1122345566667777888 6666666665 2332332 45667
Q ss_pred HHHHHHhcCChhHHHHHHHHHHH
Q 038748 424 LVAGLCDMHMLPEAVKYAKGMAE 446 (482)
Q Consensus 424 li~~~~~~g~~~~A~~~~~~m~~ 446 (482)
+...|...|++++|...|++..+
T Consensus 342 la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 342 AAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 88889999999999999988754
No 77
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.36 E-value=7.8e-11 Score=96.87 Aligned_cols=163 Identities=10% Similarity=-0.044 Sum_probs=86.2
Q ss_pred hHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHh
Q 038748 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICR 182 (482)
Q Consensus 103 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 182 (482)
.|..+...+...|++++|...|+++....+.+..++..+...+...|++++|...++.+.+... .+...+..+...+..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP-DNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHH
Confidence 3444555555555566666655555555444555555555555555566666555555554421 234445555555555
Q ss_pred cCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHH
Q 038748 183 DGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETV 262 (482)
Q Consensus 183 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~ 262 (482)
.|++++|.+.++.+....+.+...+..+...+...|++++|...+++.... .|++..++..+...+... |++++|.
T Consensus 89 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~-~~~~~A~ 164 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGL---RPNEGKVHRAIAFSYEQM-GRHEEAL 164 (186)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHT-TCHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc---CccchHHHHHHHHHHHHc-CCHHHHH
Confidence 555555555555543333444555555555555555555555555555432 343444555555555555 5555555
Q ss_pred HHHHHHHH
Q 038748 263 NSLKRMME 270 (482)
Q Consensus 263 ~~~~~m~~ 270 (482)
+.+++..+
T Consensus 165 ~~~~~~~~ 172 (186)
T 3as5_A 165 PHFKKANE 172 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555443
No 78
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.36 E-value=8.6e-10 Score=101.99 Aligned_cols=202 Identities=11% Similarity=0.004 Sum_probs=85.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHHhc---CCC--CCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCC--C--CHH
Q 038748 208 AILLEGWEKERDVANAKKTFGEMVIEV---GWD--PDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCN--P--GMT 278 (482)
Q Consensus 208 ~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~--p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~--~--~~~ 278 (482)
..+...+...|++++|...+++..... +.. |.....+..+...+... |++++|...+++....... + ...
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAW-ARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 344444455555555555554443211 111 11122333344444444 5555555555544432110 0 122
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHH-----HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---Hhh
Q 038748 279 FFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYN-----MMISLYCYSNETGAAMKLLDEMVYNGAFPD---IQT 350 (482)
Q Consensus 279 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-----~li~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~ 350 (482)
++..+...+...|++++|...+++......-......+. ..+..+...|++++|...+++.......+. ...
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 344444455555555555555555431111000001111 122234455555555555555443221110 112
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC----CCccCh-hhHHHHHHHHhcCCChHHHHHHHHHHH
Q 038748 351 YNILFEFLVKGRKLWEASGLFNEMVKN----ENVLNH-ENCRAAVRVYMDSDDPYVAIKFWKYMI 410 (482)
Q Consensus 351 ~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~ 410 (482)
+..+...+...|++++|...++..... +..++. ..+..+..++...|+.++|.+.+++..
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 344445555556666666655554432 111111 134444555556666666666666554
No 79
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.35 E-value=6.8e-10 Score=102.67 Aligned_cols=292 Identities=11% Similarity=-0.013 Sum_probs=190.9
Q ss_pred HHHHHhcCChHhHHHHHHHhhCCCCCC-H----HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC---ChhhHHHHH
Q 038748 177 LSAICRDGKTIDAWQFLRVVDGRIKPD-N----DTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPD---NVPAYDSYL 248 (482)
Q Consensus 177 l~~~~~~g~~~~a~~~~~~~~~~~~~~-~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~~l~ 248 (482)
...+...|++++|...+++.....+++ . .+++.+...+...|++++|...+++......-.++ ...++..+.
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 100 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 100 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 344456677777777766643222222 1 24566667777888888888888876642111111 122355667
Q ss_pred HHHHccCCChHHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccc---CCCCCHHHHHH
Q 038748 249 ITLLKGCDGIYETVNSLKRMMER----GCN--P-GMTFFKLAFEECLTGQNLRGAEFIWGAMVGRI---GFRPDTHMYNM 318 (482)
Q Consensus 249 ~~~~~~~~~~~~a~~~~~~m~~~----~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~~ 318 (482)
..+... |++++|.+.+++..+. +.. | ....+..+...+...|++++|...+.+.++.. +......++..
T Consensus 101 ~~~~~~-G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 179 (373)
T 1hz4_A 101 EILFAQ-GFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 179 (373)
T ss_dssp HHHHHT-TCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHC-CCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 777788 9999999999987653 222 2 24456667888999999999999999876322 11112456778
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-hhHH-----HHHHHHHhcCCHHHHHHHHHHHHhCCCccC---hhhHHHH
Q 038748 319 MISLYCYSNETGAAMKLLDEMVYNGAFPDI-QTYN-----ILFEFLVKGRKLWEASGLFNEMVKNENVLN---HENCRAA 389 (482)
Q Consensus 319 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~-----~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l 389 (482)
+...+...|++++|...+++.......++. ..+. ..+..+...|++++|..+++........+. ...+..+
T Consensus 180 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~l 259 (373)
T 1hz4_A 180 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 259 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHH
Confidence 888999999999999999988753211111 1121 233447789999999999998876432211 2245677
Q ss_pred HHHHhcCCChHHHHHHHHHHHHc----CCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHHc----CCC----CCHHHH
Q 038748 390 VRVYMDSDDPYVAIKFWKYMIEN----HCSDLS-ETGNLLVAGLCDMHMLPEAVKYAKGMAEK----GIQ----VTPFAL 456 (482)
Q Consensus 390 i~~~~~~~~~~~a~~~~~~m~~~----~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~----~~~~~~ 456 (482)
...+...|++++|.+.++..... |..++. ..+..+..++...|+.++|...+++.... |.. ......
T Consensus 260 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~~~~g~~~ 339 (373)
T 1hz4_A 260 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAM 339 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccHHHHHHHccHHH
Confidence 88899999999999999987642 222222 25666778888999999999999887543 321 112234
Q ss_pred HHHHHHHHHhccH
Q 038748 457 SKLKQILIKARKE 469 (482)
Q Consensus 457 ~~l~~~~~~~g~~ 469 (482)
..++..+......
T Consensus 340 ~~ll~~~~~~~~~ 352 (373)
T 1hz4_A 340 AQQLRQLIQLNTL 352 (373)
T ss_dssp HHHHHHHHHTTCS
T ss_pred HHHHHHHHhCCCC
Confidence 4555566555554
No 80
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.33 E-value=7.2e-11 Score=117.30 Aligned_cols=166 Identities=10% Similarity=0.000 Sum_probs=150.8
Q ss_pred CHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHH
Q 038748 100 SPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSA 179 (482)
Q Consensus 100 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 179 (482)
+..+|+.+...+.+.|++++|++.|++..+..+.+..+|..+..+|.+.|++++|++.|++..+... -+...|..+..+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P-~~~~a~~nLg~~ 86 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP-TFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 4688999999999999999999999999999888899999999999999999999999999998753 367889999999
Q ss_pred HHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChH
Q 038748 180 ICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIY 259 (482)
Q Consensus 180 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~ 259 (482)
+...|++++|++.|++..+-.+-+...|+.+..+|.+.|++++|+..|++..+ +.|++..++..+...+... |+++
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~---l~P~~~~a~~~L~~~l~~~-g~~~ 162 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALK---LKPDFPDAYCNLAHCLQIV-CDWT 162 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCSCCHHHHHHHHHHHHHT-TCCT
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCChHHHhhhhhHHHhc-ccHH
Confidence 99999999999999996654566889999999999999999999999999974 4888899999999999999 9999
Q ss_pred HHHHHHHHHHH
Q 038748 260 ETVNSLKRMME 270 (482)
Q Consensus 260 ~a~~~~~~m~~ 270 (482)
+|.+.+++..+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999887754
No 81
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.30 E-value=6.1e-10 Score=91.42 Aligned_cols=161 Identities=13% Similarity=0.001 Sum_probs=71.4
Q ss_pred HHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHH
Q 038748 173 LNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252 (482)
Q Consensus 173 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~ 252 (482)
+..+...+...|++++|...++.+....+.+..++..+...+...|++++|...++++... .|++...+..+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD---APDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHH
Confidence 3344444445555555555554444333344445555555555555555555555554422 3333444444444444
Q ss_pred ccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHH
Q 038748 253 KGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAA 332 (482)
Q Consensus 253 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 332 (482)
.. |++++|.+.++++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|
T Consensus 88 ~~-~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 88 QV-QKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR--PNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HH-TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred Hh-cCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHcCCHHHH
Confidence 44 44555554444444331 1233334444444444444444444444443111 12233444444444444444444
Q ss_pred HHHHHHHH
Q 038748 333 MKLLDEMV 340 (482)
Q Consensus 333 ~~~~~~m~ 340 (482)
...+++..
T Consensus 164 ~~~~~~~~ 171 (186)
T 3as5_A 164 LPHFKKAN 171 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444433
No 82
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.27 E-value=1.1e-10 Score=103.28 Aligned_cols=205 Identities=9% Similarity=-0.029 Sum_probs=115.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhhccc-----C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CC
Q 038748 277 MTFFKLAFEECLTGQNLRGAEFIWGAMVGRI-----G-FRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYN------GA 344 (482)
Q Consensus 277 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-----~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g~ 344 (482)
..++..+...+...|++++|...+.++++.. + .+....++..+...|...|++++|...|.+..+. ..
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 4455566666666666666666666654221 1 1223445666677777777777777777666553 11
Q ss_pred -CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCcc-ChhhHHHHHHHHhcCCChHHHHHHHHHHHHc----
Q 038748 345 -FPDIQTYNILFEFLVKGRKLWEASGLFNEMVKN------ENVL-NHENCRAAVRVYMDSDDPYVAIKFWKYMIEN---- 412 (482)
Q Consensus 345 -~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---- 412 (482)
......+..+...+...|++++|..++++..+. +..| ...++..+..+|...|++++|.+.++++.+.
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 202 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK 202 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 112445666667777777777777777776654 1112 3455667777777788888888877777642
Q ss_pred ---CCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHH--H-cC--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHhh
Q 038748 413 ---HCSDLS-ETGNLLVAGLCDMHMLPEAVKYAKGMA--E-KG--IQVTPFALSKLKQILIKARKEAVYEELLKKCKA 481 (482)
Q Consensus 413 ---~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~--~-~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 481 (482)
...+.. ..|..+...+...+....+..+..... + .+ ......++..+..+|.+.|++++|.+++++..+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 203 EFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 122222 233333333333333332222211110 1 11 112235677788888888888888888887654
No 83
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.26 E-value=7.3e-10 Score=94.66 Aligned_cols=193 Identities=9% Similarity=-0.009 Sum_probs=144.0
Q ss_pred CCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHH
Q 038748 99 HSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLL 177 (482)
Q Consensus 99 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 177 (482)
.|+..|......+...|++++|+..|++..+..+ ++...+..+..++...|++++|++.|+...+... .+...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY-NLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-SHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc-chHHHHHHHH
Confidence 4667888888888999999999999999888887 7777777788889999999999999999887643 2566788888
Q ss_pred HHHHhcCChHhHHHHHHHhhCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC--ChhhHHHHH
Q 038748 178 SAICRDGKTIDAWQFLRVVDGRIKPDN-------DTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPD--NVPAYDSYL 248 (482)
Q Consensus 178 ~~~~~~g~~~~a~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~~l~ 248 (482)
.++...|++++|.+.|++.....+.+. .+|..+...+...|++++|+..|++.. .+.|+ +..++..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al---~~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT---DVTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSSCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH---hcCCCcccHHHHHHHH
Confidence 889999999999999988655445555 557888888888999999999999886 45786 667777777
Q ss_pred HHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 038748 249 ITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMV 304 (482)
Q Consensus 249 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 304 (482)
..+... |+ ..++++...+ ..+...|.... ....+.+++|...++...
T Consensus 161 ~~~~~~-~~-----~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~ 207 (228)
T 4i17_A 161 VLFYNN-GA-----DVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAV 207 (228)
T ss_dssp HHHHHH-HH-----HHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HH-----HHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHh
Confidence 777655 33 3344444432 22233333332 233466788888888886
No 84
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.25 E-value=1e-10 Score=103.31 Aligned_cols=137 Identities=12% Similarity=0.043 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhc-----CCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHc------C
Q 038748 204 NDTYAILLEGWEKERDVANAKKTFGEMVIEV-----GWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMER------G 272 (482)
Q Consensus 204 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~------~ 272 (482)
..++..+...|...|++++|...+++..... +-.|....++..+...+... |++++|++.+++.... .
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~ 121 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKR-GKYKEAEPLCKRALEIREKVLGK 121 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHcCC
Confidence 4455556666666666666666666554321 22233344555555555555 6666666666555432 0
Q ss_pred -CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcc------cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038748 273 -CNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGR------IGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVY 341 (482)
Q Consensus 273 -~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 341 (482)
.+....++..+...+...|++++|...+.++++. ...+....++..+...|...|++++|...+++..+
T Consensus 122 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 122 FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 0112344455555555556666665555555421 00111234455555555566666666666555543
No 85
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.21 E-value=9.9e-10 Score=109.19 Aligned_cols=165 Identities=11% Similarity=0.017 Sum_probs=146.2
Q ss_pred CHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHH
Q 038748 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEG 213 (482)
Q Consensus 134 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 213 (482)
+..+|+.+...+.+.|++++|++.|++..+... -+..+|+.+..+|.+.|++++|++.|++..+-.+-+...|..+..+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P-~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 568899999999999999999999999998653 3578899999999999999999999999665456678999999999
Q ss_pred HHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 038748 214 WEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNL 293 (482)
Q Consensus 214 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 293 (482)
|.+.|++++|++.|++..+ +.|++..+|+.+...+... |++++|++.|++..+.. +-+...+..+..++...|++
T Consensus 87 l~~~g~~~~A~~~~~kAl~---l~P~~~~a~~~Lg~~~~~~-g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQ---INPAFADAHSNLASIHKDS-GNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCC
T ss_pred HHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccH
Confidence 9999999999999999974 4888899999999999999 99999999999998864 23577889999999999999
Q ss_pred hHHHHHHHHhh
Q 038748 294 RGAEFIWGAMV 304 (482)
Q Consensus 294 ~~a~~~~~~~~ 304 (482)
++|.+.+++++
T Consensus 162 ~~A~~~~~kal 172 (723)
T 4gyw_A 162 TDYDERMKKLV 172 (723)
T ss_dssp TTHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998888765
No 86
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.21 E-value=2.7e-09 Score=91.07 Aligned_cols=194 Identities=9% Similarity=-0.097 Sum_probs=141.8
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHH
Q 038748 275 PGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNIL 354 (482)
Q Consensus 275 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 354 (482)
.|...+......+...|++++|...|...+ +..-.++...+..+..++...|++++|+..|++..+.... +...+..+
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l 82 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYL-KLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGK 82 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHH-hccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHH
Confidence 356778888888999999999999999887 3332267777777888899999999999999998886332 45678888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCccCh-------hhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCC---hhhHHHH
Q 038748 355 FEFLVKGRKLWEASGLFNEMVKNENVLNH-------ENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDL---SETGNLL 424 (482)
Q Consensus 355 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~l 424 (482)
...+...|++++|...+++..+.... +. ..|..+...+...|++++|.+.|+...+. .|+ ...|..+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l 159 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHH
Confidence 88899999999999999998875432 33 45777788888899999999999998874 455 3566667
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHhh
Q 038748 425 VAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKCKA 481 (482)
Q Consensus 425 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 481 (482)
..+|...| ..+++++...+. .+...|.... ....+.+++|...+++..+
T Consensus 160 ~~~~~~~~-----~~~~~~a~~~~~-~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~ 208 (228)
T 4i17_A 160 GVLFYNNG-----ADVLRKATPLAS-SNKEKYASEK--AKADAAFKKAVDYLGEAVT 208 (228)
T ss_dssp HHHHHHHH-----HHHHHHHGGGTT-TCHHHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-----HHHHHHHHhccc-CCHHHHHHHH--HHHHHHHHHHHHHHHHHhh
Confidence 67665443 344555554432 2344444433 3456778999998887653
No 87
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.14 E-value=3.1e-09 Score=81.90 Aligned_cols=128 Identities=13% Similarity=0.115 Sum_probs=81.8
Q ss_pred hHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHh
Q 038748 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICR 182 (482)
Q Consensus 103 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 182 (482)
.|..+...+...|++++|..+|+++.+.++.+...+..+...+...|++++|...++++.+.+. .+...+..+...+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-CchHHHHHHHHHHHH
Confidence 4556666666677777777777776666555666666666666677777777777776665532 245556666666666
Q ss_pred cCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 038748 183 DGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMV 231 (482)
Q Consensus 183 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 231 (482)
.|++++|.++++.+....+.+..++..+..++.+.|++++|...++++.
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 6666666666666544334455666666666666666666666666655
No 88
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.13 E-value=6.5e-09 Score=92.37 Aligned_cols=130 Identities=10% Similarity=-0.018 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCC-C----HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChh---
Q 038748 314 HMYNMMISLYCYS-NETGAAMKLLDEMVYNGAFP-D----IQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHE--- 384 (482)
Q Consensus 314 ~~~~~li~~~~~~-~~~~~a~~~~~~m~~~g~~p-~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--- 384 (482)
.+++.+...|... |++++|+..|++..+..... + ..++..+...+...|++++|...|++..+........
T Consensus 118 ~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 197 (292)
T 1qqe_A 118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWS 197 (292)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGG
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHH
Confidence 3455666667774 77777777777665521000 1 2456667777777888888888888777754332211
Q ss_pred ---hHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCh------hhHHHHHHHHH--hcCChhHHHHHHHHHH
Q 038748 385 ---NCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLS------ETGNLLVAGLC--DMHMLPEAVKYAKGMA 445 (482)
Q Consensus 385 ---~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~------~~~~~li~~~~--~~g~~~~A~~~~~~m~ 445 (482)
.|..+..++...|++++|...|++..+. .|+. ..+..++.+|. ..+++++|+..|+++.
T Consensus 198 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 198 LKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 4566667777788888888888776642 2321 12334445554 3466777777776653
No 89
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.09 E-value=5.7e-09 Score=92.76 Aligned_cols=206 Identities=9% Similarity=-0.077 Sum_probs=148.8
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcc---cCCCCC-HHHHHHHHHHHHhcCCHHHH
Q 038748 257 GIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGR---IGFRPD-THMYNMMISLYCYSNETGAA 332 (482)
Q Consensus 257 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~-~~~~~~li~~~~~~~~~~~a 332 (482)
++++|...|++. ...|...|++++|...|.+.++- .|-.++ ..+|+.+..+|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 588888888776 34577889999999999877632 121122 56888899999999999999
Q ss_pred HHHHHHHHHC----CCCC-CHhhHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCcc-C----hhhHHHHHHHHhcCCChHH
Q 038748 333 MKLLDEMVYN----GAFP-DIQTYNILFEFLVKG-RKLWEASGLFNEMVKNENVL-N----HENCRAAVRVYMDSDDPYV 401 (482)
Q Consensus 333 ~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~~~~-~----~~~~~~li~~~~~~~~~~~ 401 (482)
+..|++..+. |-.. -..+++.+...|... |++++|...|++..+..... + ..++..+...|.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 9999887653 1110 135678888899996 99999999999988642111 1 3468888999999999999
Q ss_pred HHHHHHHHHHcCCCCChh------hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH------HHHHHHHHHHH--Hhc
Q 038748 402 AIKFWKYMIENHCSDLSE------TGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTP------FALSKLKQILI--KAR 467 (482)
Q Consensus 402 a~~~~~~m~~~~~~p~~~------~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~------~~~~~l~~~~~--~~g 467 (482)
|.+.|++..+........ .|..+..++...|++++|...|++..+.. |+. ..+..++.++. ..+
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~l~~l~~~~~~~~~~ 254 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSED--PNFADSRESNFLKSLIDAVNEGDSE 254 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCCCcHHHHHHHHHHHHHHcCCHH
Confidence 999999999854322211 46777788999999999999999986533 321 23444555554 345
Q ss_pred cHHHHHHHHHHH
Q 038748 468 KEAVYEELLKKC 479 (482)
Q Consensus 468 ~~~~a~~~~~~m 479 (482)
++++|+..++++
T Consensus 255 ~~~~A~~~~~~~ 266 (292)
T 1qqe_A 255 QLSEHCKEFDNF 266 (292)
T ss_dssp THHHHHHHHTTS
T ss_pred HHHHHHHHhccC
Confidence 688888877654
No 90
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.08 E-value=1.7e-09 Score=107.88 Aligned_cols=153 Identities=10% Similarity=-0.075 Sum_probs=74.7
Q ss_pred hhCCCcHHHHHHHHHHH--------hcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhc
Q 038748 112 GKNCLFDAMWDAIKSMK--------KENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRD 183 (482)
Q Consensus 112 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 183 (482)
...|++++|++.|++.. +..+.+...+..+..++...|++++|++.|++..+... .+...|..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG-WRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc-chHHHHHHHHHHHHHc
Confidence 44455555555555554 33333444455555555555555555555555544321 2344444455555555
Q ss_pred CChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHH
Q 038748 184 GKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVN 263 (482)
Q Consensus 184 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~ 263 (482)
|++++|.+.|++.....+.+...|..+..+|.+.|++++ +..|++..+ +.|++..+|..+...+... |++++|++
T Consensus 481 g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~---~~P~~~~a~~~lg~~~~~~-g~~~~A~~ 555 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWS---TNDGVISAAFGLARARSAE-GDRVGAVR 555 (681)
T ss_dssp TCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHH---HCTTCHHHHHHHHHHHHHT-TCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHH---hCCchHHHHHHHHHHHHHc-CCHHHHHH
Confidence 555555555555333233344455555555555555555 555555442 2444444555555555555 55555555
Q ss_pred HHHHHHH
Q 038748 264 SLKRMME 270 (482)
Q Consensus 264 ~~~~m~~ 270 (482)
.|++..+
T Consensus 556 ~~~~al~ 562 (681)
T 2pzi_A 556 TLDEVPP 562 (681)
T ss_dssp HHHTSCT
T ss_pred HHHhhcc
Confidence 5555444
No 91
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.06 E-value=1.1e-08 Score=89.18 Aligned_cols=100 Identities=10% Similarity=-0.077 Sum_probs=62.7
Q ss_pred CCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHhhCChhhHHHHHHHHHhcCC-CC-CHhhH
Q 038748 99 HSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLS---LATFASVFSSYVVADRVKDAITTFDVMEQYGC-KH-DVFAL 173 (482)
Q Consensus 99 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~-~~~~~ 173 (482)
.+...+-.+...+.+.|++++|+..|+++....+.+ ..++..+..++.+.|++++|+..|+...+... .| ....+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 345566666666677777777777777777665544 56666677777777777777777777766422 11 13345
Q ss_pred HHHHHHHHh--------cCChHhHHHHHHHhhC
Q 038748 174 NSLLSAICR--------DGKTIDAWQFLRVVDG 198 (482)
Q Consensus 174 ~~ll~~~~~--------~g~~~~a~~~~~~~~~ 198 (482)
..+..++.. .|++++|...|+++..
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 125 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFID 125 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHH
Confidence 555556666 6666666666666543
No 92
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.06 E-value=8.9e-09 Score=89.87 Aligned_cols=216 Identities=7% Similarity=-0.020 Sum_probs=126.6
Q ss_pred CCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCC
Q 038748 236 WDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPG---MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD 312 (482)
Q Consensus 236 ~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 312 (482)
..|++...+......+... |++++|+..|+++.+.. +-+ ...+..+..++...|++++|...|+..++...-.|.
T Consensus 10 ~~~~~~~~~~~~a~~~~~~-g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 87 (261)
T 3qky_A 10 LRHSSPQEAFERAMEFYNQ-GKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR 87 (261)
T ss_dssp -CCSSHHHHHHHHHHHHHT-TCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT
T ss_pred CCCCCHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch
Confidence 3555566666667777777 77777777777776643 112 455666667777777777777777777633211222
Q ss_pred -HHHHHHHHHHHHh--------cCCHHHHHHHHHHHHHCCCCCCHh-hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccC
Q 038748 313 -THMYNMMISLYCY--------SNETGAAMKLLDEMVYNGAFPDIQ-TYNILFEFLVKGRKLWEASGLFNEMVKNENVLN 382 (482)
Q Consensus 313 -~~~~~~li~~~~~--------~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 382 (482)
...+..+..++.. .|++++|+..|+++.+. .|+.. ....+. .+..+... .
T Consensus 88 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~--------------~~~~~~~~----~ 147 (261)
T 3qky_A 88 VPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQ--------------KIRELRAK----L 147 (261)
T ss_dssp HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHH--------------HHHHHHHH----H
T ss_pred hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHH--------------HHHHHHHH----H
Confidence 3445556666666 67777777777776664 23221 111110 00000000 0
Q ss_pred hhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCC--ChhhHHHHHHHHHhc----------CChhHHHHHHHHHHHcCCC
Q 038748 383 HENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSD--LSETGNLLVAGLCDM----------HMLPEAVKYAKGMAEKGIQ 450 (482)
Q Consensus 383 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~~~~ 450 (482)
...+..+...|.+.|++++|...|+.+.+..... ....+..+..+|... |++++|...|+++.+....
T Consensus 148 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 227 (261)
T 3qky_A 148 ARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPD 227 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCC
Confidence 0113566778888999999999999988753211 224566777777755 8889999999998876522
Q ss_pred CC--HHHHHHHHHHHHHhccHHHHH
Q 038748 451 VT--PFALSKLKQILIKARKEAVYE 473 (482)
Q Consensus 451 ~~--~~~~~~l~~~~~~~g~~~~a~ 473 (482)
.. ......+...+.+.|+++.+.
T Consensus 228 ~~~~~~a~~~l~~~~~~~~~~~~~~ 252 (261)
T 3qky_A 228 SPLLRTAEELYTRARQRLTELEGDA 252 (261)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred ChHHHHHHHHHHHHHHHHHHhhhhh
Confidence 11 234444555555556555443
No 93
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.06 E-value=1.6e-08 Score=77.90 Aligned_cols=129 Identities=14% Similarity=0.142 Sum_probs=86.7
Q ss_pred HHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 038748 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEK 216 (482)
Q Consensus 137 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 216 (482)
+|..+...+...|++++|..+++.+.+.+. .+...+..+...+...|++++|..+++++....+.+...+..+...+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 456667777777777788777777766542 3556666677777777777777777777554344556667777777777
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHH
Q 038748 217 ERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMME 270 (482)
Q Consensus 217 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~ 270 (482)
.|++++|...++++... .|++...+..+...+... |++++|.+.++++..
T Consensus 82 ~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALEL---DPRSAEAWYNLGNAYYKQ-GDYDEAIEYYQKALE 131 (136)
T ss_dssp TTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTT-TCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHH-ccHHHHHHHHHHHHc
Confidence 77777777777776643 344455666666666666 777777777666654
No 94
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.04 E-value=8.7e-07 Score=78.13 Aligned_cols=221 Identities=9% Similarity=-0.031 Sum_probs=144.6
Q ss_pred CCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhC--ChhhHHHHHHHHHhcCCCCCHhhHHHHHHHH----Hhc---CC
Q 038748 115 CLFDAMWDAIKSMKKENVLSLATFASVFSSYVVAD--RVKDAITTFDVMEQYGCKHDVFALNSLLSAI----CRD---GK 185 (482)
Q Consensus 115 ~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~----~~~---g~ 185 (482)
...++|+++++.+...++....+|+.--..+...| +++++++.++.+...+.+ +..+|+.--..+ ... ++
T Consensus 47 e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 47 EYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCC
Confidence 34456777777777777666667776666666666 777777777777765432 444455444444 334 56
Q ss_pred hHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCC------
Q 038748 186 TIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVA--NAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDG------ 257 (482)
Q Consensus 186 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~------ 257 (482)
+++++++++.+....+.|..+|+.-.-++.+.|.++ ++++.++.+... .|.+..+|+.-...+... ++
T Consensus 126 ~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~---d~~N~sAW~~R~~ll~~l-~~~~~~~~ 201 (306)
T 3dra_A 126 PYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT---DLKNNSAWSHRFFLLFSK-KHLATDNT 201 (306)
T ss_dssp THHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHSS-GGGCCHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhc-cccchhhh
Confidence 777777777766656667777777777777777777 777777777643 666777777666666555 55
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhH-HHHHHHHhhccc-CCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 038748 258 IYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRG-AEFIWGAMVGRI-GFRPDTHMYNMMISLYCYSNETGAAMKL 335 (482)
Q Consensus 258 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~ 335 (482)
++++++.+++++... +-|...|+-.-..+.+.|+... +..+...+.+.. .-..+...+..+...|.+.|+.++|.++
T Consensus 202 ~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 202 IDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 677777777777653 3456666666666666666433 445555554211 1134567777777788777888888888
Q ss_pred HHHHHH
Q 038748 336 LDEMVY 341 (482)
Q Consensus 336 ~~~m~~ 341 (482)
++.+.+
T Consensus 281 ~~~l~~ 286 (306)
T 3dra_A 281 YDLLKS 286 (306)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 887765
No 95
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.03 E-value=1.6e-08 Score=84.78 Aligned_cols=123 Identities=11% Similarity=-0.053 Sum_probs=63.7
Q ss_pred HHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccC
Q 038748 176 LLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255 (482)
Q Consensus 176 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 255 (482)
+..++.+.|++++|...|++.....+.+...+..+..+|...|++++|...|++... +.|++..++..+...+...
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~- 135 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQ---LEADNLAANIFLGNYYYLT- 135 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHH-
Confidence 555666666666666666664443445566666666666666666666666666653 2565666666655555443
Q ss_pred CC--hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 038748 256 DG--IYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMV 304 (482)
Q Consensus 256 ~~--~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 304 (482)
+. ...+...++.... ..|....+.....++...|++++|...|++.+
T Consensus 136 ~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al 184 (208)
T 3urz_A 136 AEQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVI 184 (208)
T ss_dssp HHHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 32 2223333333221 11222222233334444556666666666654
No 96
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.03 E-value=1.2e-07 Score=82.86 Aligned_cols=67 Identities=7% Similarity=-0.054 Sum_probs=29.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHH
Q 038748 202 PDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMME 270 (482)
Q Consensus 202 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~ 270 (482)
++..++..+..++...|++++|++++.+.... +-.+++...+...+..+++. |+.+.|.+.+++|.+
T Consensus 98 ~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~-~~~~~~lea~~l~vqi~L~~-~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 98 NSPYELYLLATAQAILGDLDKSLETCVEGIDN-DEAEGTTELLLLAIEVALLN-NNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS-SCSTTHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHhcc-CCCcCcHHHHHHHHHHHHHC-CCHHHHHHHHHHHHh
Confidence 33333344444555555555555555444311 11113344444444444444 444444444444443
No 97
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.02 E-value=3e-07 Score=80.24 Aligned_cols=125 Identities=16% Similarity=0.188 Sum_probs=54.1
Q ss_pred HHHHHHHHccCCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCC-----CHHHHHH
Q 038748 245 DSYLITLLKGCDGIYETVNSLKRMMERGC-NPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRP-----DTHMYNM 318 (482)
Q Consensus 245 ~~l~~~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~~ 318 (482)
..+...+... |++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.++.|. +. .| +..+...
T Consensus 104 ~~la~i~~~~-g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~-~~--~~d~~~~~d~~l~~ 179 (310)
T 3mv2_B 104 YLLATAQAIL-GDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT-NA--IEDTVSGDNEMILN 179 (310)
T ss_dssp HHHHHHHHHH-TCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HH--SCHHHHHHHHHHHH
T ss_pred HHHHHHHHHc-CCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH-hc--CccccccchHHHHH
Confidence 3444444444 555555555555443331 1133444445555555555555555555553 21 33 1233333
Q ss_pred HHHHHH--hcC--CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038748 319 MISLYC--YSN--ETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375 (482)
Q Consensus 319 li~~~~--~~~--~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 375 (482)
|+.++. ..| ++++|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.
T Consensus 180 Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 180 LAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 333311 112 455555555555443 2222222222234455555555555555433
No 98
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.01 E-value=1.1e-08 Score=90.45 Aligned_cols=161 Identities=10% Similarity=-0.048 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHH-HHHHHHHH
Q 038748 136 ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDT-YAILLEGW 214 (482)
Q Consensus 136 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~l~~~~ 214 (482)
..+..+...+...|++++|...|+...+... -+...+..+...+...|++++|...++.+... .|+... .......+
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~-~p~~~~~~~~~~~~l 195 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLSN-QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ-DQDTRYQGLVAQIEL 195 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG-GCSHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHHCCCHHHHHHHHHhCchh-hcchHHHHHHHHHHH
Confidence 3344444444555555555555555544321 13344444555555555555555555543322 122221 11122223
Q ss_pred HhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCh
Q 038748 215 EKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCN-PGMTFFKLAFEECLTGQNL 293 (482)
Q Consensus 215 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g~~ 293 (482)
...++.+.|...+++.... .|++...+..+...+... |++++|++.|.++.+.... .+...+..++..+...|+.
T Consensus 196 ~~~~~~~~a~~~l~~al~~---~P~~~~~~~~la~~l~~~-g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 196 LXQAADTPEIQQLQQQVAE---NPEDAALATQLALQLHQV-GRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHTSCHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HhhcccCccHHHHHHHHhc---CCccHHHHHHHHHHHHHc-ccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 4444455555555554422 454555555555555555 5555555555555543211 1134455555555555555
Q ss_pred hHHHHHHHH
Q 038748 294 RGAEFIWGA 302 (482)
Q Consensus 294 ~~a~~~~~~ 302 (482)
++|...+++
T Consensus 272 ~~a~~~~r~ 280 (287)
T 3qou_A 272 DALASXYRR 280 (287)
T ss_dssp CHHHHHHHH
T ss_pred CcHHHHHHH
Confidence 555555544
No 99
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.00 E-value=7.2e-09 Score=103.44 Aligned_cols=185 Identities=10% Similarity=-0.083 Sum_probs=150.2
Q ss_pred HhhCChhhHHHHHHHHH--------hcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 038748 146 VVADRVKDAITTFDVME--------QYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKE 217 (482)
Q Consensus 146 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 217 (482)
...|++++|++.+++.. +.. ..+...+..+..++...|++++|.+.|++.....+.+...|..+..+|...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 67899999999999998 432 235677888999999999999999999997665677889999999999999
Q ss_pred CCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHH
Q 038748 218 RDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAE 297 (482)
Q Consensus 218 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 297 (482)
|++++|...|++..+ +.|++...+..+...+... |++++ ++.|++..+.. +-+...+..+..++.+.|++++|.
T Consensus 481 g~~~~A~~~~~~al~---l~P~~~~~~~~lg~~~~~~-g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 481 GDYDSATKHFTEVLD---TFPGELAPKLALAATAELA-GNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp TCHHHHHHHHHHHHH---HSTTCSHHHHHHHHHHHHH-TCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHc-CChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999975 4788888999999999999 99999 99999998864 335778889999999999999999
Q ss_pred HHHHHhhcccCCCCC-HHHHHHHHHHHHhcCC--------HHHHHHHHHHHH
Q 038748 298 FIWGAMVGRIGFRPD-THMYNMMISLYCYSNE--------TGAAMKLLDEMV 340 (482)
Q Consensus 298 ~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~--------~~~a~~~~~~m~ 340 (482)
+.|++.+ ...|+ ...+..+..++...++ +++|.+.+..+.
T Consensus 555 ~~~~~al---~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~ 603 (681)
T 2pzi_A 555 RTLDEVP---PTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALP 603 (681)
T ss_dssp HHHHTSC---TTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSC
T ss_pred HHHHhhc---ccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCC
Confidence 9999886 33565 5667777777755443 555665555443
No 100
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.00 E-value=3.8e-08 Score=83.66 Aligned_cols=183 Identities=8% Similarity=-0.052 Sum_probs=96.6
Q ss_pred HhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCC-CH-hhHHH
Q 038748 101 PYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLS---LATFASVFSSYVVADRVKDAITTFDVMEQYGCKH-DV-FALNS 175 (482)
Q Consensus 101 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~-~~~~~ 175 (482)
...+..+...+...|++++|+..|+++....+.+ ...+..+..++.+.|++++|+..|+.+.+..... .. ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 4455555666777777777777777777665422 3566667777777777777777777776653221 11 12333
Q ss_pred HHHHHHh------------------cCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCC
Q 038748 176 LLSAICR------------------DGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWD 237 (482)
Q Consensus 176 ll~~~~~------------------~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 237 (482)
+..++.. .|++++|...|+.+....+-+...+....... .+...+
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~----------~~~~~~------- 146 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLV----------FLKDRL------- 146 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHH----------HHHHHH-------
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHH----------HHHHHH-------
Confidence 3333332 34555555555554443333322221111000 000000
Q ss_pred CCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 038748 238 PDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNP--GMTFFKLAFEECLTGQNLRGAEFIWGAMV 304 (482)
Q Consensus 238 p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 304 (482)
......+...+... |++++|+..|+++.+..... ....+..+..++.+.|+.++|.+.++.+.
T Consensus 147 ---~~~~~~~a~~~~~~-~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~ 211 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTER-GAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIA 211 (225)
T ss_dssp ---HHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHc-CcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 00112344555566 77777777777766642111 12456666677777777777777777664
No 101
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.97 E-value=8.6e-09 Score=83.93 Aligned_cols=160 Identities=7% Similarity=-0.078 Sum_probs=81.6
Q ss_pred hHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHH-HH
Q 038748 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSA-IC 181 (482)
Q Consensus 103 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~~ 181 (482)
.+......+...|++++|...|++..+..+.+...+..+...+...|++++|+..|+...... |+...+..+... +.
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 344555566666667777766666666655566666666666666666766666666665532 233222221111 11
Q ss_pred hcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCC--hhhHHHHHHHHHccCCChH
Q 038748 182 RDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDN--VPAYDSYLITLLKGCDGIY 259 (482)
Q Consensus 182 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~--~~~~~~l~~~~~~~~~~~~ 259 (482)
..+....|...++......+.+...+..+..++...|++++|...|+++.. ..|+. ...+..+...+... |+.+
T Consensus 86 ~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~---~~p~~~~~~a~~~l~~~~~~~-g~~~ 161 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILK---VNLGAQDGEVKKTFMDILSAL-GQGN 161 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---TCTTTTTTHHHHHHHHHHHHH-CSSC
T ss_pred hhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHH---hCcccChHHHHHHHHHHHHHh-CCCC
Confidence 111222344444443332333455555555555555555555555555542 23321 22444455555555 5555
Q ss_pred HHHHHHHHH
Q 038748 260 ETVNSLKRM 268 (482)
Q Consensus 260 ~a~~~~~~m 268 (482)
+|...|++.
T Consensus 162 ~A~~~y~~a 170 (176)
T 2r5s_A 162 AIASKYRRQ 170 (176)
T ss_dssp HHHHHHHHH
T ss_pred cHHHHHHHH
Confidence 555555443
No 102
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.94 E-value=7.5e-06 Score=77.99 Aligned_cols=366 Identities=9% Similarity=-0.032 Sum_probs=189.0
Q ss_pred HHHHHHHHHhh-cCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCC-cHHHHHHHHHHHhc---CCCCHHHHHHH
Q 038748 67 QETVEQVLKFS-YSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCL-FDAMWDAIKSMKKE---NVLSLATFASV 141 (482)
Q Consensus 67 ~~~~~~ll~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~~~~~---~~~~~~~~~~l 141 (482)
...|...+... .++.+.+..+|+.... ..|+...|...+....+.++ .+....+|+..... ++.+...|...
T Consensus 15 R~vyer~l~~~P~~~~e~~~~iferal~---~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Y 91 (493)
T 2uy1_A 15 SAIMEHARRLYMSKDYRSLESLFGRCLK---KSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEY 91 (493)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHST---TCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHhc---cCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHH
Confidence 34455555522 3666777777775544 23566677776666665552 34455566665543 23455666666
Q ss_pred HHHHH----hhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHh---cCChHhHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 038748 142 FSSYV----VADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICR---DGKTIDAWQFLRVVDGRIKPDNDTYAILLEGW 214 (482)
Q Consensus 142 i~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 214 (482)
+..+. .+++.+.+..+|+........ + +..+-..|.. ..+...+..+..+ .
T Consensus 92 i~f~~~~~~~~~~~~~vR~iy~rAL~~P~~-~---~~~lw~~Y~~fE~~~~~~~~~~~~~~------------------~ 149 (493)
T 2uy1_A 92 IEEEGKIEDEQTRIEKIRNGYMRALQTPMG-S---LSELWKDFENFELELNKITGKKIVGD------------------T 149 (493)
T ss_dssp HHHTSSCSSHHHHHHHHHHHHHHHHTSCCT-T---HHHHHHHHHHHHHHHCHHHHHHHHHH------------------H
T ss_pred HHHHHhchhhhHHHHHHHHHHHHHHhChhh-h---HHHHHHHHHHHHHHhccccHHHHHHH------------------H
Confidence 65443 235566677777776653111 1 1111111111 1111111111111 1
Q ss_pred HhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccC-CC-----hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 038748 215 EKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC-DG-----IYETVNSLKRMMERGCNPGMTFFKLAFEECL 288 (482)
Q Consensus 215 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~-~~-----~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 288 (482)
.+.+..|..+++.+... ....+...|...+..--... +- .+.+..+|+++... ++-+...|...+..+.
T Consensus 150 --~~~y~~ar~~y~~~~~~--~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~-~p~~~~lW~~ya~~~~ 224 (493)
T 2uy1_A 150 --LPIFQSSFQRYQQIQPL--IRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS-FYYAEEVYFFYSEYLI 224 (493)
T ss_dssp --HHHHHHHHHHHHHHHHH--HHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHH
T ss_pred --hHHHHHHHHHHHHHHHH--HhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHH
Confidence 12233344444443321 00002223433333221110 00 23456677777664 3445666777777777
Q ss_pred hcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---------CCC---CHhhHHHHHH
Q 038748 289 TGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNG---------AFP---DIQTYNILFE 356 (482)
Q Consensus 289 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g---------~~p---~~~~~~~ll~ 356 (482)
..|+++.|..++++.+.. +.+...|. .|+...+.++. ++.+.+.- ..+ ....|...+.
T Consensus 225 ~~~~~~~ar~i~erAi~~---P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~ 294 (493)
T 2uy1_A 225 GIGQKEKAKKVVERGIEM---SDGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLN 294 (493)
T ss_dssp HTTCHHHHHHHHHHHHHH---CCSSHHHH----HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhC---CCcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHH
Confidence 888888888888888632 22332222 22222111221 22222210 001 1234555566
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcC-CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChh
Q 038748 357 FLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDS-DDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLP 435 (482)
Q Consensus 357 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 435 (482)
.+.+.+..+.|..+|+.. +.. ..+...|......-... ++++.|.++|+...+.. +-+...|...+......|+.+
T Consensus 295 ~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~ 371 (493)
T 2uy1_A 295 YVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEE 371 (493)
T ss_dssp HHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHH
Confidence 666677888899998888 321 22334443222222222 36888999998887753 223345666677677788888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHh
Q 038748 436 EAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKCK 480 (482)
Q Consensus 436 ~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 480 (482)
.|..+|+++. -....|...+..-...|+.+.+..++++..
T Consensus 372 ~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 372 NARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 8888888862 246677777777777788888888877765
No 103
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.94 E-value=2.5e-08 Score=97.74 Aligned_cols=161 Identities=12% Similarity=-0.056 Sum_probs=124.6
Q ss_pred cCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHH
Q 038748 78 YSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITT 157 (482)
Q Consensus 78 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 157 (482)
.|+.++|.+.|+.... ..+.+...|..+...+...|++++|.+.|++..+..+.+..++..+..+|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVR--HRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3678899999998766 44556889999999999999999999999999999888899999999999999999999999
Q ss_pred HHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHhHHhc
Q 038748 158 FDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKE---RDVANAKKTFGEMVIEV 234 (482)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~ 234 (482)
|++..+... .+...+..+..++...|++++|.+.|++.....+.+...+..+..++... |++++|.+.+++....
T Consensus 80 ~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~- 157 (568)
T 2vsy_A 80 LQQASDAAP-EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ- 157 (568)
T ss_dssp HHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH-
T ss_pred HHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc-
Confidence 999988753 36788999999999999999999999997655566788999999999999 9999999999998754
Q ss_pred CCCCCChhhH
Q 038748 235 GWDPDNVPAY 244 (482)
Q Consensus 235 ~~~p~~~~~~ 244 (482)
.|++...+
T Consensus 158 --~p~~~~~~ 165 (568)
T 2vsy_A 158 --GVGAVEPF 165 (568)
T ss_dssp --TCCCSCHH
T ss_pred --CCcccChH
Confidence 45444444
No 104
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.94 E-value=4e-09 Score=83.26 Aligned_cols=132 Identities=11% Similarity=-0.104 Sum_probs=63.3
Q ss_pred hCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHH
Q 038748 113 KNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQF 192 (482)
Q Consensus 113 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 192 (482)
..|++++|+..+.......+.+...+..+...|.+.|++++|++.|++..+... -+..+|..+..++...|++++|...
T Consensus 9 ~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~~~~~~A~~~ 87 (150)
T 4ga2_A 9 SKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE-RDPKAHRFLGLLYELEENTDKAVEC 87 (150)
T ss_dssp CHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCchHHHHHH
Confidence 344455555555554443332333444455555555555555555555555432 2444555555555555555555555
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHhHHhcCCCCCChhhHHHHH
Q 038748 193 LRVVDGRIKPDNDTYAILLEGWEKERDVANAKKT-FGEMVIEVGWDPDNVPAYDSYL 248 (482)
Q Consensus 193 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~p~~~~~~~~l~ 248 (482)
|+....-.+-+..+|..+...|.+.|++++|... +++.. .+.|++..+|....
T Consensus 88 ~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al---~l~P~~~~~~~l~~ 141 (150)
T 4ga2_A 88 YRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAA---KLFPGSPAVYKLKE 141 (150)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHH---HHSTTCHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH---HhCcCCHHHHHHHH
Confidence 5554333333455555555555555555443332 34443 22454444444333
No 105
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.94 E-value=3.6e-08 Score=82.68 Aligned_cols=165 Identities=11% Similarity=-0.012 Sum_probs=91.5
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHH----------------HHHHHHhhCChhhHHHHHHHHHhcCCCCC
Q 038748 106 LVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFAS----------------VFSSYVVADRVKDAITTFDVMEQYGCKHD 169 (482)
Q Consensus 106 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----------------li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 169 (482)
.....+...|++++|+..|++.....+.+...|.. +..++.+.|++++|+..|+...+... -+
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~ 87 (208)
T 3urz_A 9 QKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAP-NN 87 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CC
Confidence 33444555666666666666666655444445555 66666677777777777777666542 25
Q ss_pred HhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHhHHhcCCCCCChhhHHHH
Q 038748 170 VFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERD--VANAKKTFGEMVIEVGWDPDNVPAYDSY 247 (482)
Q Consensus 170 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~p~~~~~~~~l 247 (482)
...+..+..++...|++++|...|++.....+.+..+|..+..+|...|. .+.+...+.... ...| ....+...
T Consensus 88 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~a~~~~ 163 (208)
T 3urz_A 88 VDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS---SPTK-MQYARYRD 163 (208)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC------CCCH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh---CCCc-hhHHHHHH
Confidence 56666666777777777777777776554445566666666666655443 233334443332 1111 11123333
Q ss_pred HHHHHccCCChHHHHHHHHHHHHcCCCCCHH
Q 038748 248 LITLLKGCDGIYETVNSLKRMMERGCNPGMT 278 (482)
Q Consensus 248 ~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 278 (482)
..++... |++++|+..|++..+. .|+..
T Consensus 164 g~~~~~~-~~~~~A~~~~~~al~l--~P~~~ 191 (208)
T 3urz_A 164 GLSKLFT-TRYEKARNSLQKVILR--FPSTE 191 (208)
T ss_dssp HHHHHHH-HTHHHHHHHHHHHTTT--SCCHH
T ss_pred HHHHHHc-cCHHHHHHHHHHHHHh--CCCHH
Confidence 4444445 6677777777776653 35543
No 106
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.92 E-value=1.6e-07 Score=79.82 Aligned_cols=64 Identities=9% Similarity=-0.046 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCC-C-CHhhHHHHHHHHHhcCChHhHHHHHHHhhC
Q 038748 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCK-H-DVFALNSLLSAICRDGKTIDAWQFLRVVDG 198 (482)
Q Consensus 135 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 198 (482)
...+..+...+.+.|++++|+..|+.+.+.... + ....+..+..++.+.|++++|...|+.+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~ 69 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIR 69 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 445666677788889999999999888875322 1 134677778888888888888888888654
No 107
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.90 E-value=2.9e-08 Score=80.73 Aligned_cols=160 Identities=8% Similarity=-0.030 Sum_probs=82.0
Q ss_pred HHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHH-HHh
Q 038748 138 FASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEG-WEK 216 (482)
Q Consensus 138 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~-~~~ 216 (482)
+..+...+...|++++|...|+...+... .+...+..+..++...|++++|...|+......+ +...+..+... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQ-SRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHH-TSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHh
Confidence 44455556666666666666666555321 2445566666666666666666666666433222 43333222111 112
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChhH
Q 038748 217 ERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNP-GMTFFKLAFEECLTGQNLRG 295 (482)
Q Consensus 217 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~ 295 (482)
.+....|...+++... ..|++...+..+...+... |++++|...|+++.+....+ +...+..+...+...|+.++
T Consensus 87 ~~~~~~a~~~~~~al~---~~P~~~~~~~~la~~~~~~-g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 87 QAAESPELKRLEQELA---ANPDNFELACELAVQYNQV-GRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHTSCHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred hcccchHHHHHHHHHH---hCCCCHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 2222334555555543 2555555555555555555 66666666666555543211 23345555555555555555
Q ss_pred HHHHHHHh
Q 038748 296 AEFIWGAM 303 (482)
Q Consensus 296 a~~~~~~~ 303 (482)
|...|++.
T Consensus 163 A~~~y~~a 170 (176)
T 2r5s_A 163 IASKYRRQ 170 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555544
No 108
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.90 E-value=1.2e-07 Score=83.97 Aligned_cols=160 Identities=8% Similarity=-0.072 Sum_probs=73.1
Q ss_pred hhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHH-HHH
Q 038748 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLL-SAI 180 (482)
Q Consensus 102 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll-~~~ 180 (482)
..+..+...+...|++++|...|++.....+.+...+..+...+.+.|++++|...++...... |+........ ..+
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~~~l 195 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQIEL 195 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHHHHH
Confidence 3444444444455555555555555555444444455555555555555555555555444332 2222211111 123
Q ss_pred HhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCC--hhhHHHHHHHHHccCCCh
Q 038748 181 CRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDN--VPAYDSYLITLLKGCDGI 258 (482)
Q Consensus 181 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~--~~~~~~l~~~~~~~~~~~ 258 (482)
...++.+.|...+++.....+.+...+..+...+...|++++|...|.++... .|+. ..++..+...+... |+.
T Consensus 196 ~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~---~p~~~~~~a~~~l~~~~~~~-g~~ 271 (287)
T 3qou_A 196 LXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRX---DLTAADGQTRXTFQEILAAL-GTG 271 (287)
T ss_dssp HHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTGGGGHHHHHHHHHHHHH-CTT
T ss_pred HhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc---ccccccchHHHHHHHHHHHc-CCC
Confidence 33444444444444433333444445555555555555555555555555432 3322 33444444444444 555
Q ss_pred HHHHHHHHH
Q 038748 259 YETVNSLKR 267 (482)
Q Consensus 259 ~~a~~~~~~ 267 (482)
++|...|++
T Consensus 272 ~~a~~~~r~ 280 (287)
T 3qou_A 272 DALASXYRR 280 (287)
T ss_dssp CHHHHHHHH
T ss_pred CcHHHHHHH
Confidence 555444443
No 109
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.90 E-value=7.1e-08 Score=86.32 Aligned_cols=26 Identities=12% Similarity=-0.128 Sum_probs=12.6
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHH
Q 038748 385 NCRAAVRVYMDSDDPYVAIKFWKYMI 410 (482)
Q Consensus 385 ~~~~li~~~~~~~~~~~a~~~~~~m~ 410 (482)
++..+...|...|++++|.+.|++..
T Consensus 157 ~~~~lg~~~~~~g~~~~A~~~~~~al 182 (307)
T 2ifu_A 157 LIGKASRLLVRQQKFDEAAASLQKEK 182 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444444555555555555554444
No 110
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.89 E-value=4.7e-06 Score=79.41 Aligned_cols=362 Identities=8% Similarity=-0.068 Sum_probs=180.8
Q ss_pred HHHHHhhCCCCccHHHHhhhc-CCCCCHHHHHHHHHhh--cC-CchhHhHHhhhhhcCCC-CCCCHhhHHHHHHHHhh--
Q 038748 41 TLCEIIANTPSPTVEDVLDKT-LIRVSQETVEQVLKFS--YS-HPGPAVKFFRWSAYQLN-DKHSPYAWNLVVDLLGK-- 113 (482)
Q Consensus 41 ~~~~~l~~~~~~~~~~~l~~~-~~~~~~~~~~~ll~~~--~~-~~~~a~~~~~~~~~~~~-~~~~~~~~~~li~~~~~-- 113 (482)
+.+..+.......+...+.+. ...|+.......++.. .+ ..+....+|+.+....| ...+...|...+..+..
T Consensus 20 r~l~~~P~~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~ 99 (493)
T 2uy1_A 20 HARRLYMSKDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIE 99 (493)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCS
T ss_pred HHHHHCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhch
Confidence 344555443333344444432 2346888777777722 22 34667788887776444 34578889999987653
Q ss_pred --CCCcHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHH
Q 038748 114 --NCLFDAMWDAIKSMKKENVLSL-ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAW 190 (482)
Q Consensus 114 --~~~~~~a~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 190 (482)
+++.+.+.++|++.......+. ..|..... +........+..++.+.. +.+..|.
T Consensus 100 ~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~-fE~~~~~~~~~~~~~~~~---------------------~~y~~ar 157 (493)
T 2uy1_A 100 DEQTRIEKIRNGYMRALQTPMGSLSELWKDFEN-FELELNKITGKKIVGDTL---------------------PIFQSSF 157 (493)
T ss_dssp SHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHH-HHHHHCHHHHHHHHHHHH---------------------HHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHH-HHHHhccccHHHHHHHHh---------------------HHHHHHH
Confidence 4678899999999998533332 22222222 111122222222222111 1122222
Q ss_pred HHHHHhhCCC-CCCHHHHHHHHHHHHhcC--C-----HHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHH
Q 038748 191 QFLRVVDGRI-KPDNDTYAILLEGWEKER--D-----VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETV 262 (482)
Q Consensus 191 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--~-----~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~ 262 (482)
.+++.+.... ..+...|...+..-...+ - .+.+..+|+++... .|.....|...+...... |+.+.|.
T Consensus 158 ~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~---~p~~~~lW~~ya~~~~~~-~~~~~ar 233 (493)
T 2uy1_A 158 QRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS---FYYAEEVYFFYSEYLIGI-GQKEKAK 233 (493)
T ss_dssp HHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH---TTTCHHHHHHHHHHHHHT-TCHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHc-CCHHHHH
Confidence 2222221100 012233433333321110 0 22344556555532 233344555555555555 6666666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcc---cC-----C---CCCHHHHHHHHHHHHhcCCHHH
Q 038748 263 NSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGR---IG-----F---RPDTHMYNMMISLYCYSNETGA 331 (482)
Q Consensus 263 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~-----~---~~~~~~~~~li~~~~~~~~~~~ 331 (482)
.+|++.... +.+...+. .|......++. ++.+.+. .. . .....+|...+....+.++.+.
T Consensus 234 ~i~erAi~~--P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~ 304 (493)
T 2uy1_A 234 KVVERGIEM--SDGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLEL 304 (493)
T ss_dssp HHHHHHHHH--CCSSHHHH----HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHhC--CCcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHH
Confidence 666666655 22221111 11111111111 1111100 00 0 0112456666666666777888
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHH
Q 038748 332 AMKLLDEMVYNGAFPDIQTYNILFEFLVK-GRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMI 410 (482)
Q Consensus 332 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 410 (482)
|..+|+.. +.. ..+...|......-.. .++.+.|..+|+...+.... +...+...++...+.|+.+.|..+|+.+.
T Consensus 305 AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~-~~~~~~~yid~e~~~~~~~~aR~l~er~~ 381 (493)
T 2uy1_A 305 FRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD-STLLKEEFFLFLLRIGDEENARALFKRLE 381 (493)
T ss_dssp HHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHSC
T ss_pred HHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 88888887 321 1233333322221112 23688888888887765322 33445566776677788888888888862
Q ss_pred HcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 038748 411 ENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMA 445 (482)
Q Consensus 411 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 445 (482)
.....|...+..-...|+.+.+.++++++.
T Consensus 382 -----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 382 -----KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp -----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 234667777766667788888888777765
No 111
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.88 E-value=2.7e-07 Score=77.45 Aligned_cols=177 Identities=14% Similarity=0.107 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcC----CHHHHHHH
Q 038748 260 ETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSN----ETGAAMKL 335 (482)
Q Consensus 260 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~----~~~~a~~~ 335 (482)
+|++.|++..+.| +...+..+...|...+++++|.+.|+... +.| +...+..|-..|.. + ++++|+..
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~-~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAA-AQG---DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHH-HcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 4566666666654 55666667777777778888888887775 333 45666666666666 5 78888888
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCc-cChhhHHHHHHHHhc----CCChHHHHHHH
Q 038748 336 LDEMVYNGAFPDIQTYNILFEFLVK----GRKLWEASGLFNEMVKNENV-LNHENCRAAVRVYMD----SDDPYVAIKFW 406 (482)
Q Consensus 336 ~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~~~ 406 (482)
|++..+.| +...+..+...|.. .+++++|..+|++..+.+.. .+...+..|...|.. .+++++|.+.|
T Consensus 76 ~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 76 AEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 88877754 44566666666665 67888888888888776532 125566677777776 67888888888
Q ss_pred HHHHHcCCCCChhhHHHHHHHHHhc-C-----ChhHHHHHHHHHHHcCC
Q 038748 407 KYMIENHCSDLSETGNLLVAGLCDM-H-----MLPEAVKYAKGMAEKGI 449 (482)
Q Consensus 407 ~~m~~~~~~p~~~~~~~li~~~~~~-g-----~~~~A~~~~~~m~~~~~ 449 (482)
+...+. ..+...+..|...|... | ++++|..+|++..+.|.
T Consensus 153 ~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 153 KGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 888775 22334566666666543 2 78888888888877774
No 112
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.86 E-value=2.3e-06 Score=75.39 Aligned_cols=220 Identities=6% Similarity=-0.053 Sum_probs=177.3
Q ss_pred cCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCC--CcHHHHHHHHHHHhcCCCCHHHHHHHHHHH----Hhh---
Q 038748 78 YSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNC--LFDAMWDAIKSMKKENVLSLATFASVFSSY----VVA--- 148 (482)
Q Consensus 78 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~li~~~----~~~--- 148 (482)
....++|++.++.+.. -.+-+..+|+.--..+...| ++++++++++.+...++-+..+|+.--..+ ...
T Consensus 46 ~e~s~~aL~~t~~~L~--~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~ 123 (306)
T 3dra_A 46 EEYSERALHITELGIN--ELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNND 123 (306)
T ss_dssp TCCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCHHHHHHHHHHHH--HCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhcccc
Confidence 3455789999988776 44455677898888888888 999999999999999987777777665555 555
Q ss_pred CChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChH--hHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC------H
Q 038748 149 DRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTI--DAWQFLRVVDGRIKPDNDTYAILLEGWEKERD------V 220 (482)
Q Consensus 149 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~ 220 (482)
+++++++++++.+.+... -+-.+|+.-..++.+.|.++ +++++++.+....+.|...|+.-...+.+.+. +
T Consensus 124 ~~~~~EL~~~~~~l~~~p-kny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDP-KNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CCTHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred CCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhH
Confidence 789999999999998764 37788888888888889888 99999999877677889999888777777776 8
Q ss_pred HHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCCh-HHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCChhHHH
Q 038748 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGI-YETVNSLKRMMERG--CNPGMTFFKLAFEECLTGQNLRGAE 297 (482)
Q Consensus 221 ~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~-~~a~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~~a~ 297 (482)
+++++.++.+... .|.+..+|+-.-..+.+. |+. +++..+..++...+ -+.+...+..+...+.+.|+.++|.
T Consensus 203 ~eEl~~~~~aI~~---~p~n~SaW~y~~~ll~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~ 278 (306)
T 3dra_A 203 DEELNYVKDKIVK---CPQNPSTWNYLLGIHERF-DRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESR 278 (306)
T ss_dssp HHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHT-TCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHh---CCCCccHHHHHHHHHHhc-CCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHH
Confidence 8999999988754 888999999888888777 664 44556777665432 2346788889999999999999999
Q ss_pred HHHHHhh
Q 038748 298 FIWGAMV 304 (482)
Q Consensus 298 ~~~~~~~ 304 (482)
++++.+.
T Consensus 279 ~~~~~l~ 285 (306)
T 3dra_A 279 TVYDLLK 285 (306)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999986
No 113
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.86 E-value=2.5e-08 Score=78.65 Aligned_cols=140 Identities=8% Similarity=0.002 Sum_probs=116.0
Q ss_pred hcCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHH
Q 038748 77 SYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAIT 156 (482)
Q Consensus 77 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 156 (482)
..|+.+.|+..+..... ..+-+...+-.+...|.+.|++++|++.|++..+..+.+..+|..+..+|...|++++|+.
T Consensus 9 ~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~ 86 (150)
T 4ga2_A 9 SKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVE 86 (150)
T ss_dssp CHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHH
Confidence 45677888888887655 3334566778889999999999999999999999999899999999999999999999999
Q ss_pred HHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHH-HHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 038748 157 TFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQF-LRVVDGRIKPDNDTYAILLEGWEKERD 219 (482)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~ 219 (482)
.|+...+... -+...+..+...+.+.|++++|.+. ++...+-.+.+..+|......+...|+
T Consensus 87 ~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 87 CYRRSVELNP-TQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHCT-TCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 9999998753 3678899999999999999877664 576555456678888888877777664
No 114
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.85 E-value=8.7e-06 Score=72.57 Aligned_cols=221 Identities=10% Similarity=0.014 Sum_probs=108.4
Q ss_pred CcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhC-ChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhc-C-ChHhHHHH
Q 038748 116 LFDAMWDAIKSMKKENVLSLATFASVFSSYVVAD-RVKDAITTFDVMEQYGCKHDVFALNSLLSAICRD-G-KTIDAWQF 192 (482)
Q Consensus 116 ~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-g-~~~~a~~~ 192 (482)
..++|+++++.+...++.+..+|+.--..+...| .++++++.++.+.....+ +..+|+.--.++... + ++++++++
T Consensus 69 ~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~EL~~ 147 (349)
T 3q7a_A 69 KSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVSEIEY 147 (349)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHHHHHH
T ss_pred CCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 3345555555555555545555554444444444 355555555555544322 344444444444443 4 45555555
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCC-------
Q 038748 193 LRVVDGRIKPDNDTYAILLEGWEKERDVA--------NAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDG------- 257 (482)
Q Consensus 193 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~------- 257 (482)
++.+....+.|..+|+.-.-++.+.|.++ ++++.++++.+. .|.+..+|+.....+... ++
T Consensus 148 ~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~---dp~N~SAW~~R~~lL~~l-~~~~~~~~~ 223 (349)
T 3q7a_A 148 IHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV---DGRNNSAWGWRWYLRVSR-PGAETSSRS 223 (349)
T ss_dssp HHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHTTS-TTCCCCHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhc-cccccchHH
Confidence 55554444455555554444444444443 556666665533 555555665555555544 43
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh--------------------hHHHHHHHHhhccc----CCCCCH
Q 038748 258 IYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNL--------------------RGAEFIWGAMVGRI----GFRPDT 313 (482)
Q Consensus 258 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~--------------------~~a~~~~~~~~~~~----~~~~~~ 313 (482)
++++++.++++.... +-|...|+-+-..+.+.|+. ........++.... .-.++.
T Consensus 224 ~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 302 (349)
T 3q7a_A 224 LQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVP 302 (349)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcH
Confidence 455555555555532 22444444444444433332 11222222221110 013456
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 038748 314 HMYNMMISLYCYSNETGAAMKLLDEMVYN 342 (482)
Q Consensus 314 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 342 (482)
.....|++.|...|+.++|.++++.+.+.
T Consensus 303 ~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 303 LALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 66777777777777777777777777543
No 115
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.83 E-value=1.1e-07 Score=93.15 Aligned_cols=155 Identities=7% Similarity=-0.040 Sum_probs=117.0
Q ss_pred CCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHH
Q 038748 114 NCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193 (482)
Q Consensus 114 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 193 (482)
.|++++|.+.|++..+..+.+...|..+...+...|++++|.+.|++..+... .+...+..+..++...|++++|.+.|
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 47889999999999988888889999999999999999999999999988653 36788899999999999999999999
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccC--CChHHHHHHHHHHHHc
Q 038748 194 RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC--DGIYETVNSLKRMMER 271 (482)
Q Consensus 194 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~--~~~~~a~~~~~~m~~~ 271 (482)
++.....+.+...+..+..+|.+.|++++|.+.|++..+. .|++..++..+...+.... |++++|.+.+++..+.
T Consensus 81 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 81 QQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL---LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 9976555667889999999999999999999999998754 6777778877777776653 7899999999998876
Q ss_pred C
Q 038748 272 G 272 (482)
Q Consensus 272 ~ 272 (482)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 4
No 116
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.81 E-value=1.9e-07 Score=83.47 Aligned_cols=202 Identities=10% Similarity=0.022 Sum_probs=112.9
Q ss_pred hCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 038748 148 ADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTF 227 (482)
Q Consensus 148 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 227 (482)
.|++++|.+++++..+... .. + +...++++.|...|... ...|...|++++|...|
T Consensus 4 ~~~~~eA~~~~~~a~k~~~-~~------~---~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~ 59 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK-TS------F---MKWKPDYDSAASEYAKA--------------AVAFKNAKQLEQAKDAY 59 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC-CC------S---SSCSCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc-cc------c---cCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHH
Confidence 4667777777776665311 11 0 11146677776666543 34666777888887777
Q ss_pred HHhHHh---cCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCChhHHHHH
Q 038748 228 GEMVIE---VGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMER----GCNP-GMTFFKLAFEECLTGQNLRGAEFI 299 (482)
Q Consensus 228 ~~~~~~---~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~ 299 (482)
.+...- .+-.+....+|+.+...+... |++++|+..|++..+. |-.. -..++..+...|.. |++++|...
T Consensus 60 ~~al~~~~~~~~~~~~a~~~~~lg~~~~~~-g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 60 LQEAEAHANNRSLFHAAKAFEQAGMMLKDL-QRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 766532 111111133566666666666 7777777777765442 1111 12455556666666 777777777
Q ss_pred HHHhhcccCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HhhHHHHHHHHHhcCCHHHHHHH
Q 038748 300 WGAMVGRIGFRP----DTHMYNMMISLYCYSNETGAAMKLLDEMVYN----GAFPD-IQTYNILFEFLVKGRKLWEASGL 370 (482)
Q Consensus 300 ~~~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~g~~~~a~~~ 370 (482)
|++.++...-.. ...+++.+...|...|++++|+..|++..+. +..+. ...+..+..++...|++++|...
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 776652110000 1345666667777777777777777666542 11111 12344444555566777777777
Q ss_pred HHHHH
Q 038748 371 FNEMV 375 (482)
Q Consensus 371 ~~~~~ 375 (482)
|++..
T Consensus 218 ~~~al 222 (307)
T 2ifu_A 218 VRESY 222 (307)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 77766
No 117
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.80 E-value=9.3e-07 Score=78.42 Aligned_cols=163 Identities=9% Similarity=-0.019 Sum_probs=101.4
Q ss_pred HHHHHHhcCChhHHHHHHHHhhcccCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HhhHHH
Q 038748 283 AFEECLTGQNLRGAEFIWGAMVGRIGFRPDT----HMYNMMISLYCYSNETGAAMKLLDEMVYNGAF-PD----IQTYNI 353 (482)
Q Consensus 283 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~----~~~~~~ 353 (482)
.+..+...|++++|..+++...+.....++. ..+..+...+...|++++|+..|++..+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 3556677778888888877775332222332 12334555566667788888888777763222 12 225677
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC-----CCcc-ChhhHHHHHHHHhcCCChHHHHHHHHHHHHc----CCCCC-hhhHH
Q 038748 354 LFEFLVKGRKLWEASGLFNEMVKN-----ENVL-NHENCRAAVRVYMDSDDPYVAIKFWKYMIEN----HCSDL-SETGN 422 (482)
Q Consensus 354 ll~~~~~~g~~~~a~~~~~~~~~~-----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p~-~~~~~ 422 (482)
+...|...|++++|..+|+++.+. +..+ ...++..+...|.+.|++++|.+.+++..+. +..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 777777888888888887777631 1111 2235667777777888888888877776532 22222 35667
Q ss_pred HHHHHHHhcCC-hhHHHHHHHHHH
Q 038748 423 LLVAGLCDMHM-LPEAVKYAKGMA 445 (482)
Q Consensus 423 ~li~~~~~~g~-~~~A~~~~~~m~ 445 (482)
.+..+|.+.|+ +++|.+.+++..
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHH
Confidence 77777777774 577777777664
No 118
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.78 E-value=1.4e-06 Score=77.29 Aligned_cols=163 Identities=9% Similarity=-0.035 Sum_probs=102.8
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHhcCCCCHH------HHHHHHHHHHhhCChhhHHHHHHHHHhcCCC-CC----HhhHH
Q 038748 106 LVVDLLGKNCLFDAMWDAIKSMKKENVLSLA------TFASVFSSYVVADRVKDAITTFDVMEQYGCK-HD----VFALN 174 (482)
Q Consensus 106 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~ 174 (482)
..+..+...|++++|..++++.......+.. .+..+...+...|++++|+..|++..+.... .+ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 3466777888888888888887775432211 2334556666667888888888887763222 22 23577
Q ss_pred HHHHHHHhcCChHhHHHHHHHhhC------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHHh---cCCCCCChhhH
Q 038748 175 SLLSAICRDGKTIDAWQFLRVVDG------RIKP-DNDTYAILLEGWEKERDVANAKKTFGEMVIE---VGWDPDNVPAY 244 (482)
Q Consensus 175 ~ll~~~~~~g~~~~a~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~p~~~~~~ 244 (482)
.+..+|...|++++|...|++... ...+ ...++..+..+|.+.|++++|...+++...- .+..+.-..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 777788888888888887777532 1111 2336677777788888888888777766532 12222224456
Q ss_pred HHHHHHHHccCC-ChHHHHHHHHHHH
Q 038748 245 DSYLITLLKGCD-GIYETVNSLKRMM 269 (482)
Q Consensus 245 ~~l~~~~~~~~~-~~~~a~~~~~~m~ 269 (482)
..+..++... | .+++|.+.+++..
T Consensus 240 ~~lg~~~~~~-g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 240 YQRGECLRKL-EYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHT-TCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-CCcHHHHHHHHHHHH
Confidence 6666666666 6 3477777766654
No 119
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.77 E-value=1.5e-06 Score=72.90 Aligned_cols=176 Identities=10% Similarity=-0.047 Sum_probs=121.3
Q ss_pred hHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhC----ChhhHHHHH
Q 038748 83 PAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVAD----RVKDAITTF 158 (482)
Q Consensus 83 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~----~~~~a~~~~ 158 (482)
+|+..|...... -++.++..+...|...+++++|++.|++..+.+ +..++..+...|.. + ++++|.+.|
T Consensus 4 eA~~~~~~aa~~----g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g--~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEA----GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG--DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHT----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHC----CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 466666655552 467778888888888888888888888887765 45566667777766 5 788888888
Q ss_pred HHHHhcCCCCCHhhHHHHHHHHHh----cCChHhHHHHHHHhhCCCCC--CHHHHHHHHHHHHh----cCCHHHHHHHHH
Q 038748 159 DVMEQYGCKHDVFALNSLLSAICR----DGKTIDAWQFLRVVDGRIKP--DNDTYAILLEGWEK----ERDVANAKKTFG 228 (482)
Q Consensus 159 ~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~----~~~~~~a~~~~~ 228 (482)
+...+.| +...+..|...|.. .+++++|.++|++....... +...+..|...|.. .+++++|+.+|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 8887754 55667777777766 67888888888875542221 26677777777777 777888888888
Q ss_pred HhHHhcCCCCCChhhHHHHHHHHHccCC-----ChHHHHHHHHHHHHcC
Q 038748 229 EMVIEVGWDPDNVPAYDSYLITLLKGCD-----GIYETVNSLKRMMERG 272 (482)
Q Consensus 229 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~-----~~~~a~~~~~~m~~~~ 272 (482)
+.... |.+..++..+...+....| ++++|..+|+...+.|
T Consensus 154 ~A~~~----~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 154 GSSSL----SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHT----SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHc----CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 77642 2234456666666654322 7788888887777766
No 120
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.74 E-value=1.3e-06 Score=77.45 Aligned_cols=164 Identities=9% Similarity=0.018 Sum_probs=86.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-----hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCc---cC--hhh
Q 038748 316 YNMMISLYCYSNETGAAMKLLDEMVYNGAFPDI-----QTYNILFEFLVKGRKLWEASGLFNEMVKNENV---LN--HEN 385 (482)
Q Consensus 316 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~---~~--~~~ 385 (482)
+...+..+...|++++|.+.+.+..+....... ..+..+...+...|++++|...+++..+.... +. ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 334455566666666666666665553221110 11223334455566666666666666543111 11 235
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHc-CCCCC-----hhhHHHHHHHHHhcCChhHHHHHHHHHHHcC----CCC-CHH
Q 038748 386 CRAAVRVYMDSDDPYVAIKFWKYMIEN-HCSDL-----SETGNLLVAGLCDMHMLPEAVKYAKGMAEKG----IQV-TPF 454 (482)
Q Consensus 386 ~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~~~-~~~ 454 (482)
++.+...|...|++++|.+.+++..+. ...|+ ..+|+.+...|...|++++|+.++++..+.. ... -..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 566666666667777776666665521 00111 1355666666666777777776666654321 111 144
Q ss_pred HHHHHHHHHHHhccHHHH-HHHHHHH
Q 038748 455 ALSKLKQILIKARKEAVY-EELLKKC 479 (482)
Q Consensus 455 ~~~~l~~~~~~~g~~~~a-~~~~~~m 479 (482)
+|..+..++.+.|++++| ...+++.
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 566666666666666666 5545543
No 121
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.74 E-value=4.6e-06 Score=73.92 Aligned_cols=164 Identities=7% Similarity=-0.055 Sum_probs=81.6
Q ss_pred hHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHhhCChhhHHHHHHHHHhcCCC---CC--Hh
Q 038748 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSL------ATFASVFSSYVVADRVKDAITTFDVMEQYGCK---HD--VF 171 (482)
Q Consensus 103 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~---~~--~~ 171 (482)
.+...+..+...|++++|.+.+++..+...... ..+..+...+...|++++|+..+++..+.... +. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344455566666677777666666555433211 12233444455556666666666665542111 11 23
Q ss_pred hHHHHHHHHHhcCChHhHHHHHHHhh---CCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhc---CCCCCCh
Q 038748 172 ALNSLLSAICRDGKTIDAWQFLRVVD---GRIKPD----NDTYAILLEGWEKERDVANAKKTFGEMVIEV---GWDPDNV 241 (482)
Q Consensus 172 ~~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~p~~~ 241 (482)
+++.+...|...|++++|...|++.. ...+.+ ..++..+..+|.+.|++++|...+++...-. +......
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 55566666666666666666665532 111111 1455566666666666666666666554210 1111112
Q ss_pred hhHHHHHHHHHccCCChHHH-HHHHHH
Q 038748 242 PAYDSYLITLLKGCDGIYET-VNSLKR 267 (482)
Q Consensus 242 ~~~~~l~~~~~~~~~~~~~a-~~~~~~ 267 (482)
.+|..+...+... |++++| ...+++
T Consensus 237 ~~~~~lg~~y~~~-g~~~~Ai~~~~~~ 262 (293)
T 2qfc_A 237 QLYYQRGECLRKL-EYEEAEIEDAYKK 262 (293)
T ss_dssp HHHHHHHHHHHHT-TCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc-CCcHHHHHHHHHH
Confidence 3444445555555 555555 444443
No 122
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.71 E-value=1.1e-06 Score=73.81 Aligned_cols=127 Identities=10% Similarity=-0.071 Sum_probs=63.5
Q ss_pred HHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 038748 140 SVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERD 219 (482)
Q Consensus 140 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 219 (482)
.+...+...|++++|...|++.. .|+...+..+..++...|++++|.+.|+......+.+...|..+..+|...|+
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHccc
Confidence 33444445555555555555442 23445555555555555555555555555433233445555555555555555
Q ss_pred HHHHHHHHHHhHHhcC-------------CCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHc
Q 038748 220 VANAKKTFGEMVIEVG-------------WDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMER 271 (482)
Q Consensus 220 ~~~a~~~~~~~~~~~~-------------~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~ 271 (482)
+++|...|++...... ..|....++..+...+... |++++|.+.|+...+.
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKK-EEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHc-cCHHHHHHHHHHHHHc
Confidence 5555555555543200 1111224555555555555 5666666655555543
No 123
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.71 E-value=1.1e-06 Score=73.83 Aligned_cols=129 Identities=11% Similarity=-0.059 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 038748 278 TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEF 357 (482)
Q Consensus 278 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 357 (482)
..+..+...+...|++++|...|.+.+ .|+...|..+...|...|++++|+..|++..+.. +.+...+..+..+
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~ 80 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGML 80 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHH
Confidence 345566677788888888888888764 5577888888888888888888888888887753 2356677778888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCcc---------------ChhhHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 038748 358 LVKGRKLWEASGLFNEMVKNENVL---------------NHENCRAAVRVYMDSDDPYVAIKFWKYMIEN 412 (482)
Q Consensus 358 ~~~~g~~~~a~~~~~~~~~~~~~~---------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 412 (482)
+...|++++|...|+...+..... ....+..+..+|...|++++|.+.|+...+.
T Consensus 81 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 81 YYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 888888888888888888754321 1256677778888888888888888888764
No 124
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.70 E-value=6.4e-07 Score=71.67 Aligned_cols=129 Identities=9% Similarity=-0.102 Sum_probs=81.3
Q ss_pred hhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHH
Q 038748 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAIC 181 (482)
Q Consensus 102 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 181 (482)
..|..+...+...|++++|...|++.....+.+..++..+..++...|++++|...++...+... .+...+..+..++.
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHH
Confidence 44566666666777777777777777776666666777777777777777777777777666532 34556666666667
Q ss_pred hcCChHhHHHHHHHhhCCCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHhH
Q 038748 182 RDGKTIDAWQFLRVVDGRIKPDNDTYAI--LLEGWEKERDVANAKKTFGEMV 231 (482)
Q Consensus 182 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~a~~~~~~~~ 231 (482)
..|++++|...|++.....+.+...+.. ....+...|++++|...+....
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 7777777777776654433344444433 3333556666666666665543
No 125
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.69 E-value=5.6e-07 Score=68.34 Aligned_cols=108 Identities=9% Similarity=0.005 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 038748 136 ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWE 215 (482)
Q Consensus 136 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 215 (482)
..+......|.+.|++++|++.|++..+... .+...|..+..++.+.|++++|++.|+....-.+.+...|..+..+|.
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDP-ENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 3455555566666666666666666655432 245556666666666666666666666544333445666666666666
Q ss_pred hcCCHHHHHHHHHHhHHhcCCCCCChhhHHHH
Q 038748 216 KERDVANAKKTFGEMVIEVGWDPDNVPAYDSY 247 (482)
Q Consensus 216 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l 247 (482)
..|++++|...|++..+ +.|++..++..+
T Consensus 93 ~~~~~~~A~~~~~~al~---l~P~~~~a~~~l 121 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQ---VDPSNEEAREGV 121 (126)
T ss_dssp HTTCHHHHHHHHHHHHH---HCTTCHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH---HCcCCHHHHHHH
Confidence 66666666666666653 356555544433
No 126
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.69 E-value=7.4e-07 Score=67.19 Aligned_cols=95 Identities=13% Similarity=0.122 Sum_probs=51.1
Q ss_pred HhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHH
Q 038748 101 PYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAI 180 (482)
Q Consensus 101 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 180 (482)
...|..+...+...|++++|.+.|+++....+.+..++..+...+...|++++|...|+.+.+... .+..++..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~ 87 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHH
Confidence 345555555555666666666666665555544555555555555555555555555555554321 2344444455555
Q ss_pred HhcCChHhHHHHHHHh
Q 038748 181 CRDGKTIDAWQFLRVV 196 (482)
Q Consensus 181 ~~~g~~~~a~~~~~~~ 196 (482)
...|++++|...|+.+
T Consensus 88 ~~~~~~~~A~~~~~~~ 103 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKA 103 (125)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHH
Confidence 5555555555555543
No 127
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.68 E-value=1.5e-06 Score=69.38 Aligned_cols=126 Identities=9% Similarity=-0.089 Sum_probs=62.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 038748 351 YNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCD 430 (482)
Q Consensus 351 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 430 (482)
+..+...+...|++++|...|+...+.... +...+..+..++...|++++|.+.++...+.. +.+...|..+..++..
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 334444445555555555555555443221 34445555555555555555555555555432 1233455555555556
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHHhccHHHHHHHHHHH
Q 038748 431 MHMLPEAVKYAKGMAEKGIQVTPFAL--SKLKQILIKARKEAVYEELLKKC 479 (482)
Q Consensus 431 ~g~~~~A~~~~~~m~~~~~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~m 479 (482)
.|++++|...|++..+... .+...+ ...+..+.+.|++++|.+.+++.
T Consensus 94 ~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp TTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 6666666666666554432 122233 22222355556666666655544
No 128
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.67 E-value=4.9e-07 Score=69.20 Aligned_cols=118 Identities=6% Similarity=-0.139 Sum_probs=68.8
Q ss_pred CCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHH
Q 038748 98 KHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLL 177 (482)
Q Consensus 98 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 177 (482)
+.+...|..+...+...|++++|...|++.....+.+..++..+..++...|++++|...+++..+... .+...+..+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la 91 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP-TFIKGYTRKA 91 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CchHHHHHHH
Confidence 344556666666666777777777777776666555666666666666666666666666666665432 2445555555
Q ss_pred HHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 038748 178 SAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEK 216 (482)
Q Consensus 178 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 216 (482)
.++...|++++|.+.|++.....+.+...+..+..++..
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMA 130 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 566666666666666655433222333444444444443
No 129
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.65 E-value=8.8e-07 Score=67.25 Aligned_cols=111 Identities=5% Similarity=-0.124 Sum_probs=90.8
Q ss_pred HhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHH
Q 038748 101 PYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAI 180 (482)
Q Consensus 101 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 180 (482)
...|......+.+.|++++|++.|++..+.++.+..+|..+..++.+.|++++|+..|+...+.+. .+...|..+..++
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~ 91 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS-KFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh-hhhHHHHHHHHHH
Confidence 355777788888999999999999999988888888999999999999999999999999888653 3677888899999
Q ss_pred HhcCChHhHHHHHHHhhCCCCCCHHHHHHHHH
Q 038748 181 CRDGKTIDAWQFLRVVDGRIKPDNDTYAILLE 212 (482)
Q Consensus 181 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 212 (482)
...|++++|.+.|++..+-.+.+...+..+..
T Consensus 92 ~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~ 123 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVDPSNEEAREGVRN 123 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHH
Confidence 99999999999998865544556666555543
No 130
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.64 E-value=7.7e-07 Score=67.73 Aligned_cols=118 Identities=12% Similarity=-0.062 Sum_probs=65.7
Q ss_pred HhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHH
Q 038748 101 PYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAI 180 (482)
Q Consensus 101 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 180 (482)
...+..+...+...|+++.|...|++.....+.+...+..+..++...|++++|...++...+... .+...+..+..++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP-AYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc-cCHHHHHHHHHHH
Confidence 345555556666666666666666666655555555566666666666666666666666555431 2344555555555
Q ss_pred HhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 038748 181 CRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERD 219 (482)
Q Consensus 181 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 219 (482)
...|++++|...|+......+.+...+..+..++.+.|+
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 555666666555555433233344555555555544443
No 131
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.64 E-value=5.8e-08 Score=87.99 Aligned_cols=151 Identities=10% Similarity=-0.002 Sum_probs=95.4
Q ss_pred CCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCC--------------HhhHHHHHHHH
Q 038748 115 CLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHD--------------VFALNSLLSAI 180 (482)
Q Consensus 115 ~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~ll~~~ 180 (482)
+++++|...|+......+.....+..+...+.+.|++++|+..|++..+...... ...|..+..++
T Consensus 127 ~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~ 206 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCH 206 (336)
T ss_dssp EEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555554444333333556777778888888888888888888877543221 35666667777
Q ss_pred HhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHH
Q 038748 181 CRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYE 260 (482)
Q Consensus 181 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~ 260 (482)
.+.|++++|+..|+......+.+...|..+..+|...|++++|...|++... +.|++..++..+...+... ++.++
T Consensus 207 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~---l~P~~~~a~~~l~~~~~~~-~~~~~ 282 (336)
T 1p5q_A 207 LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ---LYPNNKAAKTQLAVCQQRI-RRQLA 282 (336)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCSSCHHHHHHHHHHHHHH-HHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHH-HHHHH
Confidence 7777777777777765444455666777777777777777777777776653 3565666666666666666 66666
Q ss_pred H-HHHHHHHH
Q 038748 261 T-VNSLKRMM 269 (482)
Q Consensus 261 a-~~~~~~m~ 269 (482)
+ ...|..|.
T Consensus 283 a~~~~~~~~~ 292 (336)
T 1p5q_A 283 REKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6 33444443
No 132
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.63 E-value=7e-07 Score=74.20 Aligned_cols=28 Identities=11% Similarity=0.074 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 038748 204 NDTYAILLEGWEKERDVANAKKTFGEMV 231 (482)
Q Consensus 204 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 231 (482)
..++..+...+...|++++|...+++..
T Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~al 53 (203)
T 3gw4_A 26 SGARFMLGYVYAFMDRFDEARASFQALQ 53 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 3444444444455555555555444443
No 133
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.62 E-value=6.4e-07 Score=78.87 Aligned_cols=98 Identities=7% Similarity=-0.131 Sum_probs=66.5
Q ss_pred CHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHH
Q 038748 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEG 213 (482)
Q Consensus 134 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 213 (482)
+...+..+...+...|++++|+..|+...+... .+...|..+..++.+.|++++|...++......+.+...+..+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 345566666667777777777777777766532 2556666677777777777777777777655555566777777777
Q ss_pred HHhcCCHHHHHHHHHHhHH
Q 038748 214 WEKERDVANAKKTFGEMVI 232 (482)
Q Consensus 214 ~~~~~~~~~a~~~~~~~~~ 232 (482)
|...|++++|...|++...
T Consensus 82 ~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 7777777777777776653
No 134
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.62 E-value=2.1e-05 Score=70.11 Aligned_cols=221 Identities=8% Similarity=-0.075 Sum_probs=169.9
Q ss_pred hcCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCC-CcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhh-C-Chhh
Q 038748 77 SYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNC-LFDAMWDAIKSMKKENVLSLATFASVFSSYVVA-D-RVKD 153 (482)
Q Consensus 77 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~-~-~~~~ 153 (482)
..+..++|+++++.+.. -.+-+..+|+.--..+...| .+++++.+++.+...++-+..+|+.-..++... + ++++
T Consensus 66 ~~e~se~AL~lt~~~L~--~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 66 KEEKSERALELTEIIVR--MNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp TTCCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHH
T ss_pred hCCCCHHHHHHHHHHHH--hCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHH
Confidence 34566789999998877 45556778888888888888 599999999999999998999999888888777 7 8999
Q ss_pred HHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChH--------hHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC------
Q 038748 154 AITTFDVMEQYGCKHDVFALNSLLSAICRDGKTI--------DAWQFLRVVDGRIKPDNDTYAILLEGWEKERD------ 219 (482)
Q Consensus 154 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~--------~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------ 219 (482)
++++++.+.+... -+-.+|+.-..++.+.|.++ ++++.++++.+..+.|...|+.....+.+.+.
T Consensus 144 EL~~~~k~L~~dp-kNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~ 222 (349)
T 3q7a_A 144 EIEYIHGSLLPDP-KNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSR 222 (349)
T ss_dssp HHHHHHHHTSSCT-TCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHH
T ss_pred HHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchH
Confidence 9999999998654 37778887776666666666 88888888766667899999999888888876
Q ss_pred -HHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCCh--------------------HHHHHHHHHHHHcC-----C
Q 038748 220 -VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGI--------------------YETVNSLKRMMERG-----C 273 (482)
Q Consensus 220 -~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~--------------------~~a~~~~~~m~~~~-----~ 273 (482)
++++++.+++... ..|.+..+|+-+-..+.+. |+. ....++..++...+ -
T Consensus 223 ~~~eELe~~~~aI~---~~P~n~SaW~Ylr~Ll~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (349)
T 3q7a_A 223 SLQDELIYILKSIH---LIPHNVSAWNYLRGFLKHF-SLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTP 298 (349)
T ss_dssp HHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHT-TCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCC
T ss_pred HHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhc-CCCcccccccccccccccccccchhHHHHHHHHHhcccccccC
Confidence 6888888888874 4888888888776666665 543 23333333333321 1
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 038748 274 NPGMTFFKLAFEECLTGQNLRGAEFIWGAMV 304 (482)
Q Consensus 274 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 304 (482)
.++......++..|...|+.++|.++++.+.
T Consensus 299 ~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~ 329 (349)
T 3q7a_A 299 LPVPLALEYLADSFIEQNRVDDAAKVFEKLS 329 (349)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3567888889999999999999999999985
No 135
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.61 E-value=4.6e-07 Score=75.34 Aligned_cols=158 Identities=11% Similarity=-0.046 Sum_probs=88.3
Q ss_pred HhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHhhHHHHHHHHHhcC
Q 038748 288 LTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYN----GAFP-DIQTYNILFEFLVKGR 362 (482)
Q Consensus 288 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~g 362 (482)
...|++++|.++++.+. . .......++..+...+...|++++|...+++..+. |..+ ....+..+...+...|
T Consensus 3 ~~~g~~~~A~~~~~~~~-~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 3 FEAHDYALAERQAQALL-A-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp ----CHHHHHHHHHHHH-T-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred cccccHHHHHHHHHHhc-C-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence 35677777777554443 1 11124556667777777777777777777766551 1111 2344556666677777
Q ss_pred CHHHHHHHHHHHHhC----CCc--cChhhHHHHHHHHhcCCChHHHHHHHHHHHHcC--C-CCC--hhhHHHHHHHHHhc
Q 038748 363 KLWEASGLFNEMVKN----ENV--LNHENCRAAVRVYMDSDDPYVAIKFWKYMIENH--C-SDL--SETGNLLVAGLCDM 431 (482)
Q Consensus 363 ~~~~a~~~~~~~~~~----~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~-~p~--~~~~~~li~~~~~~ 431 (482)
++++|...+++..+. +-. .....+..+...+...|++++|.+.+++..+.. . .+. ..++..+...+...
T Consensus 81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 160 (203)
T 3gw4_A 81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQE 160 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHC
Confidence 777777777766543 101 112345566666667777777777776665321 1 111 12345555666667
Q ss_pred CChhHHHHHHHHHHHc
Q 038748 432 HMLPEAVKYAKGMAEK 447 (482)
Q Consensus 432 g~~~~A~~~~~~m~~~ 447 (482)
|++++|...+++..+.
T Consensus 161 g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 161 KNLLEAQQHWLRARDI 176 (203)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHH
Confidence 7777777776665543
No 136
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.61 E-value=3.3e-06 Score=66.18 Aligned_cols=103 Identities=7% Similarity=-0.088 Sum_probs=83.3
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 038748 348 IQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAG 427 (482)
Q Consensus 348 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 427 (482)
...+..+...+.+.|++++|...|+...+..+. +...|..+..+|...|++++|.+.|+...+.. +.+...|..+..+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHH
Confidence 345667777888899999999999998886543 67788888899999999999999999998854 2345778888899
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHH
Q 038748 428 LCDMHMLPEAVKYAKGMAEKGIQVTPF 454 (482)
Q Consensus 428 ~~~~g~~~~A~~~~~~m~~~~~~~~~~ 454 (482)
|...|++++|...|++..+.. |+..
T Consensus 114 ~~~lg~~~eA~~~~~~al~l~--~~~~ 138 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQHS--NDEK 138 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--CCHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC--CCHH
Confidence 999999999999999988765 5543
No 137
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.60 E-value=2e-06 Score=64.72 Aligned_cols=112 Identities=14% Similarity=0.135 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 038748 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGW 214 (482)
Q Consensus 135 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 214 (482)
...+..+...+...|++++|.+.|+++.+... .+..++..+...+...|++++|..+++.+....+.+..++..+..+|
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 45667777777788888888888887776542 35666777777777778888887777776544455667777777777
Q ss_pred HhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHH
Q 038748 215 EKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLIT 250 (482)
Q Consensus 215 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~ 250 (482)
...|++++|...|+++... .|++...+..+...
T Consensus 88 ~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~ 120 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALEL---DPNNAEAKQNLGNA 120 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHh---CCCcHHHHHHHHHH
Confidence 7778888887777777643 45444444444333
No 138
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.58 E-value=4.7e-07 Score=73.51 Aligned_cols=120 Identities=8% Similarity=0.042 Sum_probs=78.8
Q ss_pred hhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHH-HHhcCCh--Hh
Q 038748 112 GKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSA-ICRDGKT--ID 188 (482)
Q Consensus 112 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~g~~--~~ 188 (482)
...|++++|...++......+.+...|..+...|...|++++|...|+...+... .+...+..+..+ +...|++ ++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG-ENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCCcchHH
Confidence 3456677777777777776666667777777777777777777777777766532 245556666666 5566776 77
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHH
Q 038748 189 AWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVI 232 (482)
Q Consensus 189 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 232 (482)
|...|+......+.+...+..+..+|...|++++|...|++...
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 77777765444455566777777777777777777777777763
No 139
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.57 E-value=2.3e-07 Score=83.99 Aligned_cols=151 Identities=11% Similarity=-0.061 Sum_probs=123.6
Q ss_pred CCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCC---------------HHHHHHHHH
Q 038748 79 SHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLS---------------LATFASVFS 143 (482)
Q Consensus 79 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~---------------~~~~~~li~ 143 (482)
++++.|.+.|+.... ..+-+...|..+...+.+.|++++|+..|++.....+.+ ..+|..+..
T Consensus 127 ~~~~~A~~~~~~a~~--~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 204 (336)
T 1p5q_A 127 KSFEKAKESWEMNSE--EKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM 204 (336)
T ss_dssp EEEECCCCGGGCCHH--HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHH--HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence 344555555554332 112246788889999999999999999999999987655 589999999
Q ss_pred HHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 038748 144 SYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANA 223 (482)
Q Consensus 144 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 223 (482)
+|.+.|++++|+..|+...+... .+...|..+..+|...|++++|...|++.....+.+..++..+..++.+.|++++|
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELDS-NNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998753 47788999999999999999999999997665567888999999999999999988
Q ss_pred -HHHHHHhHH
Q 038748 224 -KKTFGEMVI 232 (482)
Q Consensus 224 -~~~~~~~~~ 232 (482)
..+|..|..
T Consensus 284 ~~~~~~~~~~ 293 (336)
T 1p5q_A 284 EKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 456666653
No 140
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.57 E-value=1.1e-07 Score=79.02 Aligned_cols=116 Identities=12% Similarity=0.035 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHhhCChhhHHHHHHHHHhcCCC-C--------------CHhhHHHHHHHHHhcCChHhHHHHHHHhhCCC
Q 038748 136 ATFASVFSSYVVADRVKDAITTFDVMEQYGCK-H--------------DVFALNSLLSAICRDGKTIDAWQFLRVVDGRI 200 (482)
Q Consensus 136 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~--------------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 200 (482)
..+..+...+...|++++|+..|++..+.... + ....+..+..++...|++++|...++......
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 33444445555555555555555555442111 0 01344455555555555555555555543333
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHcc
Q 038748 201 KPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG 254 (482)
Q Consensus 201 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 254 (482)
+.+...+..+..+|...|++++|...|++.... .|++..++..+...+...
T Consensus 119 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~ 169 (198)
T 2fbn_A 119 KNNVKALYKLGVANMYFGFLEEAKENLYKAASL---NPNNLDIRNSYELCVNKL 169 (198)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHH
Confidence 444555555555555556666665555555432 444444444444444433
No 141
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.56 E-value=1.5e-06 Score=76.52 Aligned_cols=95 Identities=12% Similarity=0.015 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 038748 279 FFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFL 358 (482)
Q Consensus 279 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 358 (482)
.+..+...+...|++++|...|...++.. +.+...|..+..+|...|++++|+..+++..+... -+...+..+..++
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 33444444455555555555555444211 12344445555555555555555555555444321 1334444445555
Q ss_pred HhcCCHHHHHHHHHHHHh
Q 038748 359 VKGRKLWEASGLFNEMVK 376 (482)
Q Consensus 359 ~~~g~~~~a~~~~~~~~~ 376 (482)
...|++++|...|++..+
T Consensus 83 ~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 555555555555555444
No 142
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.56 E-value=6.2e-06 Score=71.03 Aligned_cols=184 Identities=8% Similarity=-0.114 Sum_probs=91.0
Q ss_pred hCCCcHHHHHHHHHHHhcCCCCHHHHHHH-------HHHHHhhCChhhHHHHHHHHHhcCCCCCH---------------
Q 038748 113 KNCLFDAMWDAIKSMKKENVLSLATFASV-------FSSYVVADRVKDAITTFDVMEQYGCKHDV--------------- 170 (482)
Q Consensus 113 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l-------i~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------------- 170 (482)
..++...|.+.|.++....+.....|..+ ...+.+.++..+++..+..-.+ +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 46777777777777777777677777766 4555555555555555544433 11211
Q ss_pred -------hhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCC---
Q 038748 171 -------FALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDN--- 240 (482)
Q Consensus 171 -------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~--- 240 (482)
...-.+...+...|++++|.++|+.+..+.+-+. ....+...+.+.+++++|+..|+.... .|++
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~----~~d~~~~ 170 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGK----WPDKFLA 170 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGG----CSCHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhc----cCCcccH
Confidence 1122334445555666666666655544322222 444444455566666666666653321 1111
Q ss_pred hhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 038748 241 VPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPG--MTFFKLAFEECLTGQNLRGAEFIWGAMV 304 (482)
Q Consensus 241 ~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~ 304 (482)
..++..+-.++... |++++|+..|++.......|. .........++.+.|+.++|..+|+++.
T Consensus 171 ~~a~~~LG~al~~L-G~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~ 235 (282)
T 4f3v_A 171 GAAGVAHGVAAANL-ALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQ 235 (282)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC-CCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 11333444444444 555555555555443221122 1223333444444555555555555543
No 143
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.55 E-value=9.6e-07 Score=69.25 Aligned_cols=94 Identities=15% Similarity=0.034 Sum_probs=37.2
Q ss_pred HHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 038748 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEK 216 (482)
Q Consensus 137 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 216 (482)
.+..+...+.+.|++++|...|+....... .+...|..+..++...|++++|...|++...-.+.+...|..+..+|.+
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~ 116 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYDF-YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLR 116 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence 333344444444444444444444443321 1333334444444444444444444443322222333344444444444
Q ss_pred cCCHHHHHHHHHHhH
Q 038748 217 ERDVANAKKTFGEMV 231 (482)
Q Consensus 217 ~~~~~~a~~~~~~~~ 231 (482)
.|++++|...|++..
T Consensus 117 lg~~~eA~~~~~~al 131 (151)
T 3gyz_A 117 LKAPLKAKECFELVI 131 (151)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH
Confidence 444444444444433
No 144
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.54 E-value=7.1e-07 Score=69.99 Aligned_cols=96 Identities=13% Similarity=-0.107 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 038748 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGW 214 (482)
Q Consensus 135 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 214 (482)
...+..+...+...|++++|...|+....... .+...|..+..++...|++++|...|+......+.+...+..+..+|
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDH-YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 33444444445555555555555555444321 23444444444555555555555555543332233444555555555
Q ss_pred HhcCCHHHHHHHHHHhH
Q 038748 215 EKERDVANAKKTFGEMV 231 (482)
Q Consensus 215 ~~~~~~~~a~~~~~~~~ 231 (482)
...|++++|...|+...
T Consensus 100 ~~~g~~~~A~~~~~~al 116 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQ 116 (148)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 55555555555555544
No 145
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.54 E-value=1.5e-06 Score=74.90 Aligned_cols=126 Identities=7% Similarity=-0.168 Sum_probs=63.8
Q ss_pred HHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HhhHHHHHHHHHh
Q 038748 283 AFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPD--IQTYNILFEFLVK 360 (482)
Q Consensus 283 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~ 360 (482)
....+...|++++|.++|..+. .. .|+......+...+.+.+++++|+..|+...... .|. ...+..+-.++..
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~-~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~ 183 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAP-VA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAAN 183 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSC-CT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHH-hc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHH
Confidence 3445555666666666665553 21 2332244444445556666666666665443321 110 1234445555666
Q ss_pred cCCHHHHHHHHHHHHhCCCccC--hhhHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 038748 361 GRKLWEASGLFNEMVKNENVLN--HENCRAAVRVYMDSDDPYVAIKFWKYMIEN 412 (482)
Q Consensus 361 ~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 412 (482)
.|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 184 LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 184 LALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 6666666666666553322132 223344455555666666666666666653
No 146
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.52 E-value=2.4e-06 Score=65.25 Aligned_cols=115 Identities=10% Similarity=-0.052 Sum_probs=71.2
Q ss_pred CHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHH
Q 038748 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEG 213 (482)
Q Consensus 134 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 213 (482)
+...+..+...+...|++++|...|+...+... .+...+..+..++...|++++|.+.+++.....+.+...+..+..+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNP-KDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 455666667777777777777777777666432 2556666666666677777777777766544344456666666677
Q ss_pred HHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHH
Q 038748 214 WEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252 (482)
Q Consensus 214 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~ 252 (482)
+.+.|++++|...|++.... .|.+...+..+...+.
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~l~~~~~ 129 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDL---DSSCKEAADGYQRCMM 129 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---CGGGTHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHh---CCCchHHHHHHHHHHH
Confidence 77777777777777666532 4444444444444443
No 147
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.52 E-value=6.2e-06 Score=61.23 Aligned_cols=96 Identities=6% Similarity=-0.185 Sum_probs=54.3
Q ss_pred hhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHH
Q 038748 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAIC 181 (482)
Q Consensus 102 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 181 (482)
..+..+...+...|++++|...|+......+.+...+..+..++...|++++|...++...+... .+...+..+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHH
Confidence 44555555666666666666666666655555555566666666666666666666666555432 23444555555555
Q ss_pred hcCChHhHHHHHHHhhC
Q 038748 182 RDGKTIDAWQFLRVVDG 198 (482)
Q Consensus 182 ~~g~~~~a~~~~~~~~~ 198 (482)
..|++++|.+.++....
T Consensus 84 ~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HTTCHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 55555555555555443
No 148
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.51 E-value=3.9e-06 Score=63.73 Aligned_cols=116 Identities=12% Similarity=0.008 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 038748 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGW 214 (482)
Q Consensus 135 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 214 (482)
...+..+...+...|++++|...|+...+... .+...+..+..++...|++++|.+.++......+.+...+..+..+|
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNP-ANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 44566666666777777777777777665432 24556666666666677777777666665443344566666666666
Q ss_pred HhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHcc
Q 038748 215 EKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG 254 (482)
Q Consensus 215 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 254 (482)
...|++++|...|++.... .|++...+..+...+...
T Consensus 91 ~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~l~~~~~~~ 127 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALEL---DPDNETYKSNLKIAELKL 127 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHhc---CccchHHHHHHHHHHHHH
Confidence 6677777777666666532 444444555554444443
No 149
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.50 E-value=5.8e-07 Score=70.51 Aligned_cols=99 Identities=6% Similarity=-0.062 Sum_probs=85.9
Q ss_pred CCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHH
Q 038748 99 HSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLS 178 (482)
Q Consensus 99 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 178 (482)
.+...+..+...+...|++++|...|+.....++.+...|..+..+|...|++++|+..|+....... .+...+..+..
T Consensus 19 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~ 97 (148)
T 2vgx_A 19 DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI-XEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHH
Confidence 35667788888999999999999999999998888899999999999999999999999999988653 36677888899
Q ss_pred HHHhcCChHhHHHHHHHhhC
Q 038748 179 AICRDGKTIDAWQFLRVVDG 198 (482)
Q Consensus 179 ~~~~~g~~~~a~~~~~~~~~ 198 (482)
++...|++++|.+.|+....
T Consensus 98 ~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999988543
No 150
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.46 E-value=2.5e-06 Score=69.17 Aligned_cols=118 Identities=12% Similarity=0.089 Sum_probs=100.3
Q ss_pred cCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHH-HHhhCCh--hhH
Q 038748 78 YSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSS-YVVADRV--KDA 154 (482)
Q Consensus 78 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~-~~~~~~~--~~a 154 (482)
.|+.+.|...|+.... ..+.+...|..+...+...|++++|...|++.....+.+...+..+..+ +...|++ ++|
T Consensus 23 ~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp ----CCCCHHHHHHHH--HCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred ccCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 5788899999987766 3456788999999999999999999999999999888888889999998 7889998 999
Q ss_pred HHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhC
Q 038748 155 ITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDG 198 (482)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 198 (482)
...|+...+... .+...+..+..++...|++++|...|+....
T Consensus 101 ~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 101 RAMIDKALALDS-NEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-CcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 999999998753 3577888899999999999999999998654
No 151
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.43 E-value=4.6e-06 Score=63.17 Aligned_cols=92 Identities=12% Similarity=-0.071 Sum_probs=48.3
Q ss_pred hHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHh
Q 038748 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICR 182 (482)
Q Consensus 103 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 182 (482)
.|..+...+.+.|++++|+..|++..+..+.+...|..+..++...|++++|+..|+...+... .+...|..+..++..
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHH
Confidence 4444455555555555555555555555555555555555555555555555555555555432 134444445555555
Q ss_pred cCChHhHHHHHHH
Q 038748 183 DGKTIDAWQFLRV 195 (482)
Q Consensus 183 ~g~~~~a~~~~~~ 195 (482)
.|++++|...|++
T Consensus 85 ~~~~~~A~~~~~~ 97 (126)
T 3upv_A 85 VKEYASALETLDA 97 (126)
T ss_dssp TTCHHHHHHHHHH
T ss_pred HhCHHHHHHHHHH
Confidence 5555555555544
No 152
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.41 E-value=1.7e-06 Score=67.28 Aligned_cols=96 Identities=5% Similarity=-0.156 Sum_probs=65.2
Q ss_pred HhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHH
Q 038748 101 PYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAI 180 (482)
Q Consensus 101 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 180 (482)
...+..+...+.+.|++++|...|+.....++.+...|..+..++...|++++|+..|+...+... .+...+..+..++
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI-NEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHH
Confidence 345555666667777777777777777777666677777777777777777777777777766542 2455566666677
Q ss_pred HhcCChHhHHHHHHHhh
Q 038748 181 CRDGKTIDAWQFLRVVD 197 (482)
Q Consensus 181 ~~~g~~~~a~~~~~~~~ 197 (482)
...|++++|.+.|+...
T Consensus 97 ~~~g~~~~A~~~~~~al 113 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSAR 113 (142)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 77777777777776643
No 153
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.41 E-value=2.2e-06 Score=66.59 Aligned_cols=99 Identities=14% Similarity=-0.086 Sum_probs=68.4
Q ss_pred CCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHH
Q 038748 133 LSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLE 212 (482)
Q Consensus 133 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 212 (482)
.+...+..+...+.+.|++++|...|+....... .+...|..+..++...|++++|...|+......+.+...+..+..
T Consensus 16 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 94 (142)
T 2xcb_A 16 DTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDH-YDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence 3445566666677777777777777777776542 356667777777777777777777777755444556667777777
Q ss_pred HHHhcCCHHHHHHHHHHhHH
Q 038748 213 GWEKERDVANAKKTFGEMVI 232 (482)
Q Consensus 213 ~~~~~~~~~~a~~~~~~~~~ 232 (482)
+|...|++++|...|+....
T Consensus 95 ~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 77777777777777777664
No 154
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.40 E-value=0.00047 Score=61.16 Aligned_cols=242 Identities=9% Similarity=-0.020 Sum_probs=111.1
Q ss_pred hHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCC-
Q 038748 188 DAWQFLRVVDGRIKPDNDTYAILLEGWEKERD----------VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD- 256 (482)
Q Consensus 188 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~- 256 (482)
+|+++++.+....+-+..+|+.--.++...+. +++++.+++.+... .|.+..+|+.-...+... +
T Consensus 48 eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~---~PKny~aW~hR~wlL~~l-~~ 123 (331)
T 3dss_A 48 SVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV---NPKSYGTWHHRCWLLSRL-PE 123 (331)
T ss_dssp HHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHC-SS
T ss_pred HHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHhcc-Cc
Confidence 55666666554444555555544333333332 34555555555432 455555555544444444 3
Q ss_pred -ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 038748 257 -GIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQN-LRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMK 334 (482)
Q Consensus 257 -~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 334 (482)
.+++++++++.+.+.. +-|...|+.-.-.+...|. ++++.+.+..+++.. +-|...|+.....+...+....+-
T Consensus 124 ~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~--p~N~SAW~~R~~ll~~l~~~~~~~- 199 (331)
T 3dss_A 124 PNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN--FSNYSSWHYRSCLLPQLHPQPDSG- 199 (331)
T ss_dssp CCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHHSCCC----
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhhhccccc-
Confidence 2455555555555432 2233444443334444444 244444444444221 223334443333332221000000
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcC-----------CChHHHH
Q 038748 335 LLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDS-----------DDPYVAI 403 (482)
Q Consensus 335 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----------~~~~~a~ 403 (482)
..|. ...+.++++++++...+...+. |...|+.+-..+.+. +.+++++
T Consensus 200 ------~~~~--------------~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el 258 (331)
T 3dss_A 200 ------PQGR--------------LPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCELSVEKSTVLQSEL 258 (331)
T ss_dssp ---------C--------------CCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHH
T ss_pred ------cccc--------------cchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccccchHHHHHHHHHH
Confidence 0000 0002355666666666554333 444554433333333 3467778
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHH-----HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 038748 404 KFWKYMIENHCSDLSETGNLLVAGL-----CDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQI 462 (482)
Q Consensus 404 ~~~~~m~~~~~~p~~~~~~~li~~~-----~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~ 462 (482)
+.++++.+. .||. .|..+..++ ...|..+++...+.++++.+. ....-|.-+...
T Consensus 259 ~~~~elle~--~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp-~r~~~y~d~~~~ 318 (331)
T 3dss_A 259 ESCKELQEL--EPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP-MRAAYLDDLRSK 318 (331)
T ss_dssp HHHHHHHHH--CTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCG-GGHHHHHHHHHH
T ss_pred HHHHHHHhh--Cccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCc-chhhHHHHHHHH
Confidence 888888774 3554 444322222 235667788888888876652 223344444433
No 155
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.39 E-value=1.5e-05 Score=59.09 Aligned_cols=107 Identities=12% Similarity=0.082 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 038748 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGW 214 (482)
Q Consensus 135 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 214 (482)
...+..+...+...|++++|...|+....... .+...+..+..++...|++++|...++......+.+...+..+..++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDP-HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 34566677777777888888888877776542 35666777777777777777777777775544445667777777777
Q ss_pred HhcCCHHHHHHHHHHhHHhcCCCCCChhhHH
Q 038748 215 EKERDVANAKKTFGEMVIEVGWDPDNVPAYD 245 (482)
Q Consensus 215 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ 245 (482)
...|++++|...+++.. ...|++...+.
T Consensus 83 ~~~~~~~~A~~~~~~~~---~~~~~~~~~~~ 110 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGL---KHEANNPQLKE 110 (118)
T ss_dssp HHTTCHHHHHHHHHHHH---TTCTTCHHHHH
T ss_pred HHHhhHHHHHHHHHHHH---HcCCCCHHHHH
Confidence 77777777777777765 34555444433
No 156
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.38 E-value=6.2e-06 Score=62.59 Aligned_cols=105 Identities=11% Similarity=0.041 Sum_probs=64.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcC--CCCC----hhhHHH
Q 038748 350 TYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENH--CSDL----SETGNL 423 (482)
Q Consensus 350 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~p~----~~~~~~ 423 (482)
.+..+...+.+.|++++|+..|++.++..+. +...|..+..+|.+.|++++|++.++..++.+ ..++ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 3445556666667777777777666664332 45566666667777777777777776665421 1111 124556
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHH
Q 038748 424 LVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALS 457 (482)
Q Consensus 424 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 457 (482)
+..++...|++++|++.|++..... |++.+..
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~~--~~~~~~~ 120 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSEF--RDPELVK 120 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS--CCHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC--cCHHHHH
Confidence 6677777888888888888776543 5555443
No 157
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.37 E-value=1.3e-06 Score=72.49 Aligned_cols=151 Identities=14% Similarity=0.012 Sum_probs=105.4
Q ss_pred cCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCH----------------HHHHHH
Q 038748 78 YSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSL----------------ATFASV 141 (482)
Q Consensus 78 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~l 141 (482)
.++++.+.+.++.... ........+..+...+...|++++|+..|++.....+.+. .+|..+
T Consensus 17 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 94 (198)
T 2fbn_A 17 LYFQGAKKSIYDYTDE--EKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNL 94 (198)
T ss_dssp -----CCCSGGGCCHH--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhccccCchhhCCHH--HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHH
Confidence 3556666666663222 1112345677778888889999999999999887654333 788888
Q ss_pred HHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHH
Q 038748 142 FSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVA 221 (482)
Q Consensus 142 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 221 (482)
..+|...|++++|+..++...+... .+...+..+..++...|++++|.+.|+......+.+..++..+..++...++.+
T Consensus 95 a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 173 (198)
T 2fbn_A 95 ATCYNKNKDYPKAIDHASKVLKIDK-NNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEAR 173 (198)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999988643 467788888899999999999999999866545667788888888887777766
Q ss_pred HHH-HHHHHhH
Q 038748 222 NAK-KTFGEMV 231 (482)
Q Consensus 222 ~a~-~~~~~~~ 231 (482)
++. ..|..+.
T Consensus 174 ~~~~~~~~~~f 184 (198)
T 2fbn_A 174 KKDKLTFGGMF 184 (198)
T ss_dssp C----------
T ss_pred HHHHHHHHHHh
Confidence 665 4444443
No 158
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.37 E-value=1.1e-05 Score=60.94 Aligned_cols=96 Identities=10% Similarity=-0.040 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 038748 136 ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWE 215 (482)
Q Consensus 136 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 215 (482)
..|..+...+.+.|++++|+..|++..+... .+...|..+..++.+.|++++|...|+......+.+...|..+..++.
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 4566666777777777777777777776542 356667777777777777777777777755444556667777777777
Q ss_pred hcCCHHHHHHHHHHhHH
Q 038748 216 KERDVANAKKTFGEMVI 232 (482)
Q Consensus 216 ~~~~~~~a~~~~~~~~~ 232 (482)
..|++++|...|++...
T Consensus 84 ~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 84 AVKEYASALETLDAART 100 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHH
Confidence 77777777777776653
No 159
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.34 E-value=7.8e-06 Score=60.06 Aligned_cols=96 Identities=10% Similarity=-0.021 Sum_probs=52.4
Q ss_pred HhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCC--CHhhHHHHHH
Q 038748 101 PYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKH--DVFALNSLLS 178 (482)
Q Consensus 101 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~ 178 (482)
...|..+...+...|++++|...|++..+..+.+..++..+..++...|++++|.+.|++..+... . +...+..+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~l~~ 84 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIE-DEYNKDVWAAKAD 84 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSC-CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc-ccchHHHHHHHHH
Confidence 344555555556666666666666666555555555555555555555666666666655555321 1 2444555555
Q ss_pred HHHhc-CChHhHHHHHHHhh
Q 038748 179 AICRD-GKTIDAWQFLRVVD 197 (482)
Q Consensus 179 ~~~~~-g~~~~a~~~~~~~~ 197 (482)
++... |++++|.+.++.+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~ 104 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAK 104 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHG
T ss_pred HHHHHhCCHHHHHHHHHHHh
Confidence 55555 55555555555543
No 160
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.33 E-value=7.3e-06 Score=63.00 Aligned_cols=98 Identities=11% Similarity=-0.063 Sum_probs=70.2
Q ss_pred CCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHH
Q 038748 98 KHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLL 177 (482)
Q Consensus 98 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 177 (482)
+.+...|..+...+...|++++|...|+......+.+...|..+..++...|++++|...++...+... .+...+..+.
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~ 84 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLG 84 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-hhHHHHHHHH
Confidence 345667777777777777777777777777777766677777777777777777777777777776542 2556667777
Q ss_pred HHHHhcCChHhHHHHHHHh
Q 038748 178 SAICRDGKTIDAWQFLRVV 196 (482)
Q Consensus 178 ~~~~~~g~~~~a~~~~~~~ 196 (482)
.++...|++++|...|+..
T Consensus 85 ~~~~~~~~~~~A~~~~~~a 103 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRA 103 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHH
Confidence 7777777777777777664
No 161
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.32 E-value=3.8e-05 Score=72.11 Aligned_cols=200 Identities=8% Similarity=-0.044 Sum_probs=119.7
Q ss_pred HHHHHhcCCHHHHHHHHHHhHHhcCCCCCCh--------------hhHHHHHHHHHccCCChHHHHHHHHHHHHcC-CCC
Q 038748 211 LEGWEKERDVANAKKTFGEMVIEVGWDPDNV--------------PAYDSYLITLLKGCDGIYETVNSLKRMMERG-CNP 275 (482)
Q Consensus 211 ~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~--------------~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~-~~~ 275 (482)
...+.+.|++++|++.|..+.+...-..+.. .++..+...|... |++++|.+.+..+.+.- ..+
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~-~~~~~a~~~~~~~~~~~~~~~ 89 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTM-GAKDKLREFIPHSTEYMMQFA 89 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHTHHHHHTSC
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHcc
Confidence 4567888999999999998886422222110 1256677777777 88888888777765421 111
Q ss_pred CHH----HHHHHHHHHHhcCChhHHHHHHHHhhcc---cCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CC-
Q 038748 276 GMT----FFKLAFEECLTGQNLRGAEFIWGAMVGR---IGFRP-DTHMYNMMISLYCYSNETGAAMKLLDEMVYN--GA- 344 (482)
Q Consensus 276 ~~~----~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~- 344 (482)
+.. +.+.+-..+...|+.+.+..++...... .+..+ -..++..+...|...|++++|..++++.... +.
T Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD 169 (434)
T ss_dssp HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence 211 1222222333457777777777765421 11122 2446667777777788888888777766542 11
Q ss_pred -CC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--C-cc---ChhhHHHHHHHHhcCCChHHHHHHHHHHHH
Q 038748 345 -FP-DIQTYNILFEFLVKGRKLWEASGLFNEMVKNE--N-VL---NHENCRAAVRVYMDSDDPYVAIKFWKYMIE 411 (482)
Q Consensus 345 -~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~-~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 411 (482)
.+ ....+..++..|...|++++|..+++...... . .| -...+..+...+...|++++|.+.|.+..+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 11 13456667777777888888887777765431 1 11 123455566667777778888777777654
No 162
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.31 E-value=1.5e-05 Score=63.58 Aligned_cols=94 Identities=12% Similarity=0.017 Sum_probs=41.6
Q ss_pred HHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 038748 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEK 216 (482)
Q Consensus 137 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 216 (482)
.+..+...+...|++++|+..|++..+... .+...|..+..+|...|++++|+..|+......+.+...|..+..+|..
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 91 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIAP-ANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFD 91 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 334444444444444444444444444321 1333444444444444444444444444332223344444455555555
Q ss_pred cCCHHHHHHHHHHhH
Q 038748 217 ERDVANAKKTFGEMV 231 (482)
Q Consensus 217 ~~~~~~a~~~~~~~~ 231 (482)
.|++++|...|++..
T Consensus 92 ~g~~~~A~~~~~~al 106 (164)
T 3sz7_A 92 MADYKGAKEAYEKGI 106 (164)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHH
Confidence 555555555555444
No 163
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.30 E-value=1.7e-05 Score=63.23 Aligned_cols=100 Identities=7% Similarity=-0.141 Sum_probs=88.9
Q ss_pred CCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHH
Q 038748 98 KHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLL 177 (482)
Q Consensus 98 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 177 (482)
..+...|..+...+...|++++|+..|++..+..+.+...|..+..+|...|++++|+..|+...+... .+...|..+.
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg 86 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDP-KYSKAWSRLG 86 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHH
Confidence 345677888899999999999999999999999888899999999999999999999999999998753 3678899999
Q ss_pred HHHHhcCChHhHHHHHHHhhC
Q 038748 178 SAICRDGKTIDAWQFLRVVDG 198 (482)
Q Consensus 178 ~~~~~~g~~~~a~~~~~~~~~ 198 (482)
.++...|++++|...|++...
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHH
Confidence 999999999999999998654
No 164
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.30 E-value=2e-05 Score=61.31 Aligned_cols=96 Identities=15% Similarity=-0.074 Sum_probs=50.4
Q ss_pred CHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHH
Q 038748 100 SPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLS---LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSL 176 (482)
Q Consensus 100 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 176 (482)
+...+..+...+...|++++|.+.|++..+..+.+ ...|..+..++...|++++|...++...+... .+...+..+
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~ 105 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG-GDVKALYRR 105 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS-CCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc-cCHHHHHHH
Confidence 44555555566666666666666666655554332 44555555555555555555555555554321 133444444
Q ss_pred HHHHHhcCChHhHHHHHHHh
Q 038748 177 LSAICRDGKTIDAWQFLRVV 196 (482)
Q Consensus 177 l~~~~~~g~~~~a~~~~~~~ 196 (482)
..++...|++++|...|++.
T Consensus 106 a~~~~~~~~~~~A~~~~~~a 125 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRC 125 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 44555555555555555443
No 165
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.29 E-value=9.8e-06 Score=61.46 Aligned_cols=110 Identities=14% Similarity=0.057 Sum_probs=60.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCC--CCC----hhhHHH
Q 038748 350 TYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHC--SDL----SETGNL 423 (482)
Q Consensus 350 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~p~----~~~~~~ 423 (482)
.+..+...+...|++++|..+|++..+... .+...+..+...|...|++++|...++...+... .++ ...|..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELDP-TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 344445555555666666666655554332 1344555555566666666666666666554321 111 345666
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 038748 424 LVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQI 462 (482)
Q Consensus 424 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~ 462 (482)
+...|...|++++|.+.|++..+.. |+......+..+
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~ 121 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHHHH
Confidence 6666777777777777777776654 455444444443
No 166
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.28 E-value=3.6e-05 Score=59.81 Aligned_cols=109 Identities=9% Similarity=-0.066 Sum_probs=82.1
Q ss_pred CCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCC----HhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHH
Q 038748 133 LSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHD----VFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYA 208 (482)
Q Consensus 133 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 208 (482)
.+...+..+...+...|++++|.+.|+...+.. |+ ...+..+..++...|++++|...++......+.+...+.
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 356778888888888899999999888888753 44 567777788888888888888888876544455677888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHH
Q 038748 209 ILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDS 246 (482)
Q Consensus 209 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~ 246 (482)
.+..+|...|++++|...|++.... .|++...+..
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~ 138 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSL---EPKNKVFQEA 138 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH---CSSCHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc---CCCcHHHHHH
Confidence 8888888888888888888887643 5655444433
No 167
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.27 E-value=5.8e-05 Score=70.90 Aligned_cols=97 Identities=10% Similarity=0.023 Sum_probs=47.3
Q ss_pred hHHHHHHHHHccCCChHHHHHHHHHHHHc--CC--C-CCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccC-CC-C-C--
Q 038748 243 AYDSYLITLLKGCDGIYETVNSLKRMMER--GC--N-PGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIG-FR-P-D-- 312 (482)
Q Consensus 243 ~~~~l~~~~~~~~~~~~~a~~~~~~m~~~--~~--~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~-~-~-- 312 (482)
++..+...+... |++++|..++++.... +. . ....++..++..|...|++++|..++........ +. | .
T Consensus 137 ~~~~la~~~~~~-g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 215 (434)
T 4b4t_Q 137 LSIKLATLHYQK-KQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTV 215 (434)
T ss_dssp HHHHHHHHHHHH-TCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHc-cChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHH
Confidence 444444555555 5555555555544331 00 0 1133455556666666666666666655431110 11 1 1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038748 313 THMYNMMISLYCYSNETGAAMKLLDEMV 340 (482)
Q Consensus 313 ~~~~~~li~~~~~~~~~~~a~~~~~~m~ 340 (482)
...+..+...+...|++++|...|.+..
T Consensus 216 ~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 216 AELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 2334445555556667777666665544
No 168
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.24 E-value=1.1e-06 Score=83.27 Aligned_cols=142 Identities=13% Similarity=0.038 Sum_probs=77.0
Q ss_pred cHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCC--------------HhhHHHHHHHHHh
Q 038748 117 FDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHD--------------VFALNSLLSAICR 182 (482)
Q Consensus 117 ~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~ll~~~~~ 182 (482)
+++|...|+......+.....|..+...+.+.|++++|+..|++..+...... ...|..+..+|.+
T Consensus 250 ~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~ 329 (457)
T 1kt0_A 250 FEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLK 329 (457)
T ss_dssp EECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444333332223445667777777777888888888877766422111 3455555566666
Q ss_pred cCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHH
Q 038748 183 DGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETV 262 (482)
Q Consensus 183 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~ 262 (482)
.|++++|+..|+......+.+...|..+..+|...|++++|...|++.. .+.|++..++..+...+... ++.+++.
T Consensus 330 ~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al---~l~P~~~~a~~~l~~~~~~~-~~~~~a~ 405 (457)
T 1kt0_A 330 LREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVL---EVNPQNKAARLQISMCQKKA-KEHNERD 405 (457)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---TTC----CHHHHHHHHHHHH-HHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHH-HHHHHHH
Confidence 6666666666665443334455566666666666666666666666554 33555555555555555554 4444443
No 169
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.24 E-value=0.0017 Score=57.60 Aligned_cols=129 Identities=6% Similarity=-0.095 Sum_probs=70.6
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCC----------hhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCC--h
Q 038748 119 AMWDAIKSMKKENVLSLATFASVFSSYVVADR----------VKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGK--T 186 (482)
Q Consensus 119 ~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~--~ 186 (482)
+|+.+++.+...++.+..+|+.--..+...+. +++++.+++.+.....+ +..+|+.-..++...|. +
T Consensus 48 eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~~ 126 (331)
T 3dss_A 48 SVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNW 126 (331)
T ss_dssp HHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCCH
T ss_pred HHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcccH
Confidence 56677777666666555555544333333222 45566666666554432 45555555555555552 5
Q ss_pred HhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHhHHhcCCCCCChhhHHHHHHHH
Q 038748 187 IDAWQFLRVVDGRIKPDNDTYAILLEGWEKERD-VANAKKTFGEMVIEVGWDPDNVPAYDSYLITL 251 (482)
Q Consensus 187 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~ 251 (482)
++++.+++.+....+.|..+|+.-.-++...|. ++++++.++.+... .|.+..+|+.....+
T Consensus 127 ~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~---~p~N~SAW~~R~~ll 189 (331)
T 3dss_A 127 ARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR---NFSNYSSWHYRSCLL 189 (331)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHH
Confidence 566666666554445566666655555555555 35666666666533 455555555444333
No 170
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.24 E-value=1.2e-05 Score=60.95 Aligned_cols=96 Identities=13% Similarity=0.051 Sum_probs=60.9
Q ss_pred hhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCC--CCC----HhhHHH
Q 038748 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGC--KHD----VFALNS 175 (482)
Q Consensus 102 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~~ 175 (482)
..|..+...+...|++++|...|++.....+.+...+..+...+...|++++|...++...+... .++ ..++..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 45666666677777777777777777766666666677777777777777777777776655421 111 445555
Q ss_pred HHHHHHhcCChHhHHHHHHHhh
Q 038748 176 LLSAICRDGKTIDAWQFLRVVD 197 (482)
Q Consensus 176 ll~~~~~~g~~~~a~~~~~~~~ 197 (482)
+..++...|++++|.+.|+...
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~ 106 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSL 106 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHH
Confidence 5666666666666666666543
No 171
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.23 E-value=1e-05 Score=63.96 Aligned_cols=96 Identities=9% Similarity=-0.064 Sum_probs=51.7
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHc----CCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHc----CCC-CCHH
Q 038748 385 NCRAAVRVYMDSDDPYVAIKFWKYMIEN----HCSD-LSETGNLLVAGLCDMHMLPEAVKYAKGMAEK----GIQ-VTPF 454 (482)
Q Consensus 385 ~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~-~~~~ 454 (482)
++..+...|...|++++|.+.++...+. +-.+ ....+..+...+...|++++|...+++..+. +.. ....
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 4444555555556666666555554431 1000 0234555556666667777777666665432 111 1124
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHh
Q 038748 455 ALSKLKQILIKARKEAVYEELLKKCK 480 (482)
Q Consensus 455 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 480 (482)
.+..+...+...|++++|.+.+++..
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 45566667777777777777776654
No 172
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.23 E-value=2.1e-05 Score=59.65 Aligned_cols=61 Identities=7% Similarity=0.005 Sum_probs=37.4
Q ss_pred hHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHh
Q 038748 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQ 163 (482)
Q Consensus 103 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 163 (482)
++..+...+.+.|++++|++.|++..+..+.+..+|..+..+|...|++++|++.|+...+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~ 70 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVE 70 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4455555666666666666666666665555556666666666666666666666665554
No 173
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.23 E-value=3.7e-05 Score=58.24 Aligned_cols=89 Identities=19% Similarity=0.019 Sum_probs=42.1
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCC---HhhHHHHHHHH
Q 038748 107 VVDLLGKNCLFDAMWDAIKSMKKENVLSL---ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHD---VFALNSLLSAI 180 (482)
Q Consensus 107 li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~ 180 (482)
+...+...|++++|...|+.+....+.+. .++..+..++...|++++|...|+...+.... + ...+..+..++
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHH
Confidence 33444455555555555555555443222 34444555555555555555555555443211 1 23344444444
Q ss_pred HhcCChHhHHHHHHHh
Q 038748 181 CRDGKTIDAWQFLRVV 196 (482)
Q Consensus 181 ~~~g~~~~a~~~~~~~ 196 (482)
...|++++|...|+.+
T Consensus 87 ~~~g~~~~A~~~~~~~ 102 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQV 102 (129)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHH
Confidence 4445555555444443
No 174
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.21 E-value=1.7e-05 Score=58.12 Aligned_cols=99 Identities=12% Similarity=-0.019 Sum_probs=82.4
Q ss_pred CHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCC--CHHHHHHHH
Q 038748 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKP--DNDTYAILL 211 (482)
Q Consensus 134 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~ 211 (482)
+...+..+...+...|++++|...|+...+... .+...+..+..++...|++++|.+.|++.....+. +...+..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDP-EESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKA 83 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence 455677788888999999999999999888653 36778888889999999999999999986654455 788899999
Q ss_pred HHHHhc-CCHHHHHHHHHHhHHh
Q 038748 212 EGWEKE-RDVANAKKTFGEMVIE 233 (482)
Q Consensus 212 ~~~~~~-~~~~~a~~~~~~~~~~ 233 (482)
.++... |++++|.+.++.....
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHhCCHHHHHHHHHHHhhc
Confidence 999999 9999999999988743
No 175
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.21 E-value=3.1e-05 Score=59.39 Aligned_cols=96 Identities=6% Similarity=-0.136 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 038748 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGW 214 (482)
Q Consensus 135 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 214 (482)
...+..+...+...|++++|...|+...+... .+...|..+..++...|++++|...++......+.+...+..+..+|
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc-CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 34444444444444444444444444444321 13334444444444444444444444443322233344444444444
Q ss_pred HhcCCHHHHHHHHHHhH
Q 038748 215 EKERDVANAKKTFGEMV 231 (482)
Q Consensus 215 ~~~~~~~~a~~~~~~~~ 231 (482)
...|++++|...|++..
T Consensus 88 ~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 88 LEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHH
Confidence 44444444444444443
No 176
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.19 E-value=2.2e-05 Score=58.90 Aligned_cols=94 Identities=11% Similarity=-0.089 Sum_probs=66.0
Q ss_pred hHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHh
Q 038748 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICR 182 (482)
Q Consensus 103 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 182 (482)
.+..+...+.+.|++++|+..|++..+..+.+...|..+..++...|++++|+..|++..+... .+...+..+..++..
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHTN 97 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHH
Confidence 3455556667777777777777777777776777777777777777777777777777776542 245566667777777
Q ss_pred cCChHhHHHHHHHhh
Q 038748 183 DGKTIDAWQFLRVVD 197 (482)
Q Consensus 183 ~g~~~~a~~~~~~~~ 197 (482)
.|++++|...|+...
T Consensus 98 ~g~~~~A~~~~~~al 112 (121)
T 1hxi_A 98 EHNANAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH
Confidence 777777777776654
No 177
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.18 E-value=5.6e-06 Score=78.34 Aligned_cols=149 Identities=9% Similarity=-0.059 Sum_probs=116.4
Q ss_pred CchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCC---------------HHHHHHHHHH
Q 038748 80 HPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLS---------------LATFASVFSS 144 (482)
Q Consensus 80 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~---------------~~~~~~li~~ 144 (482)
+++.|.+.|+.... ...-....|..+...+.+.|++++|+..|++..+..+.+ ..+|..+..+
T Consensus 249 ~~~~A~~~~~~~~~--~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 326 (457)
T 1kt0_A 249 SFEKAKESWEMDTK--EKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMC 326 (457)
T ss_dssp EEECCCCGGGSCHH--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhcCHH--HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 34455555543322 111235678888999999999999999999999876644 6889999999
Q ss_pred HHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 038748 145 YVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAK 224 (482)
Q Consensus 145 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 224 (482)
|.+.|++++|+..|++..+... .+...|..+..+|...|++++|...|++.....+.+..++..+..++.+.++.+++.
T Consensus 327 ~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 327 YLKLREYTKAVECCDKALGLDS-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998753 367889999999999999999999999987766667788999999999999988876
Q ss_pred H-HHHHhH
Q 038748 225 K-TFGEMV 231 (482)
Q Consensus 225 ~-~~~~~~ 231 (482)
+ .+..|.
T Consensus 406 ~~~~~~~f 413 (457)
T 1kt0_A 406 RRIYANMF 413 (457)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHHH
Confidence 4 555554
No 178
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.17 E-value=4.1e-05 Score=57.35 Aligned_cols=89 Identities=7% Similarity=-0.136 Sum_probs=40.6
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcc
Q 038748 389 AVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARK 468 (482)
Q Consensus 389 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 468 (482)
+...+.+.|++++|...|+...+.. +.+...|..+..++...|++++|+..|++..+... -+...+..+..++.+.|+
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~~~~~la~~~~~~g~ 100 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHTNEHN 100 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCC
Confidence 3344444455555555555444432 11234444444444455555555555555444431 133444444445555555
Q ss_pred HHHHHHHHHHH
Q 038748 469 EAVYEELLKKC 479 (482)
Q Consensus 469 ~~~a~~~~~~m 479 (482)
+++|+..+++.
T Consensus 101 ~~~A~~~~~~a 111 (121)
T 1hxi_A 101 ANAALASLRAW 111 (121)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555554443
No 179
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.15 E-value=2.1e-05 Score=62.13 Aligned_cols=132 Identities=11% Similarity=0.012 Sum_probs=75.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC----Cc-cChh
Q 038748 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAF-PD----IQTYNILFEFLVKGRKLWEASGLFNEMVKNE----NV-LNHE 384 (482)
Q Consensus 315 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~~-~~~~ 384 (482)
++..+...|...|++++|+..+++..+.... ++ ...+..+...+...|++++|...+++..+.. .. ....
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3444555555556666666655554432100 01 1245555566666677777766666655421 10 0133
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHc----CCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 038748 385 NCRAAVRVYMDSDDPYVAIKFWKYMIEN----HCSDL-SETGNLLVAGLCDMHMLPEAVKYAKGMAE 446 (482)
Q Consensus 385 ~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 446 (482)
.+..+...+...|++++|.+.+++..+. +..+. ...+..+...|...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4556667777777777777777766532 11111 24566677777888888888888887654
No 180
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.15 E-value=6.1e-05 Score=56.97 Aligned_cols=95 Identities=16% Similarity=-0.024 Sum_probs=67.7
Q ss_pred HHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCH---hhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCC---HHHHHHHH
Q 038748 138 FASVFSSYVVADRVKDAITTFDVMEQYGCKHDV---FALNSLLSAICRDGKTIDAWQFLRVVDGRIKPD---NDTYAILL 211 (482)
Q Consensus 138 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~l~ 211 (482)
+..+...+...|++++|...|+...+.... +. ..+..+..++...|++++|...|+.+....+.+ ...+..+.
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 344566777888888888888888775422 22 366667777888888888888888765433334 56677777
Q ss_pred HHHHhcCCHHHHHHHHHHhHHh
Q 038748 212 EGWEKERDVANAKKTFGEMVIE 233 (482)
Q Consensus 212 ~~~~~~~~~~~a~~~~~~~~~~ 233 (482)
.++...|++++|...|+.+...
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 8888888888888888887754
No 181
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.08 E-value=9.5e-06 Score=77.10 Aligned_cols=120 Identities=11% Similarity=-0.074 Sum_probs=88.1
Q ss_pred HHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChH
Q 038748 108 VDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTI 187 (482)
Q Consensus 108 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 187 (482)
...+.+.|++++|++.|++..+..+.+..+|..+..+|.+.|++++|++.+++..+... .+...+..+..+|...|+++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHH
Confidence 34456678888888888888888777788888888888888888888888888887643 35677888888888888888
Q ss_pred hHHHHHHHhhCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 038748 188 DAWQFLRVVDGRIKPDNDTYAILLEG--WEKERDVANAKKTFG 228 (482)
Q Consensus 188 ~a~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~ 228 (482)
+|.+.|++..+..+.+...+..+..+ +.+.|++++|++.++
T Consensus 92 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 88888888544333344455555555 777888888888887
No 182
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.02 E-value=4.6e-05 Score=71.98 Aligned_cols=124 Identities=10% Similarity=-0.118 Sum_probs=74.2
Q ss_pred HHhcCCHHHHHHHHHHHHhC---CCcc----ChhhHHHHHHHHhcCCChHHHHHHHHHHHHc-----C-CCCCh-hhHHH
Q 038748 358 LVKGRKLWEASGLFNEMVKN---ENVL----NHENCRAAVRVYMDSDDPYVAIKFWKYMIEN-----H-CSDLS-ETGNL 423 (482)
Q Consensus 358 ~~~~g~~~~a~~~~~~~~~~---~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~-~~p~~-~~~~~ 423 (482)
+...|++++|..++++.++. -+.+ ...+++.|..+|...|++++|..++++..+. | -.|+. .+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44567777777776665542 1111 2345666777777777777777777665521 2 12222 45677
Q ss_pred HHHHHHhcCChhHHHHHHHHHHH-----cCCC-CC-HHHHHHHHHHHHHhccHHHHHHHHHHHhh
Q 038748 424 LVAGLCDMHMLPEAVKYAKGMAE-----KGIQ-VT-PFALSKLKQILIKARKEAVYEELLKKCKA 481 (482)
Q Consensus 424 li~~~~~~g~~~~A~~~~~~m~~-----~~~~-~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 481 (482)
|...|...|++++|..++++..+ .|.. |+ ..+...+..++.+.|++++|+.++.++++
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777776542 2321 22 23445555667777777777777777764
No 183
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.01 E-value=4.7e-05 Score=69.66 Aligned_cols=91 Identities=8% Similarity=-0.031 Sum_probs=56.5
Q ss_pred CHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHH
Q 038748 169 DVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYL 248 (482)
Q Consensus 169 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~ 248 (482)
+..+|..+..+|.+.|++++|++.+++.....+.+...|..+..+|...|++++|+..|++..+. .|++...+..+.
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l---~P~~~~~~~~l~ 348 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI---APEDKAIQAELL 348 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCCHHHHHHHH
Confidence 34556666666666777777777666655544556666666777777777777777777666532 555555666555
Q ss_pred HHHHccCCChHHHHH
Q 038748 249 ITLLKGCDGIYETVN 263 (482)
Q Consensus 249 ~~~~~~~~~~~~a~~ 263 (482)
..+... ++.+++.+
T Consensus 349 ~~~~~~-~~~~~a~k 362 (370)
T 1ihg_A 349 KVKQKI-KAQKDKEK 362 (370)
T ss_dssp HHHHHH-HHHHHHHH
T ss_pred HHHHHH-HHHHHHHH
Confidence 555555 55555543
No 184
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.01 E-value=2e-05 Score=74.85 Aligned_cols=121 Identities=12% Similarity=-0.014 Sum_probs=95.4
Q ss_pred HHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCH
Q 038748 141 VFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDV 220 (482)
Q Consensus 141 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 220 (482)
+...+.+.|++++|.+.|++..+... .+...|..+..++.+.|++++|.+.+++..+..+.+..+|..+..+|...|++
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 34456678999999999999988642 35788999999999999999999999987665667888999999999999999
Q ss_pred HHHHHHHHHhHHhcCCCCCChhhHHHHHHH--HHccCCChHHHHHHHH
Q 038748 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLIT--LLKGCDGIYETVNSLK 266 (482)
Q Consensus 221 ~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~--~~~~~~~~~~a~~~~~ 266 (482)
++|++.|++..+. .|++..++..+..+ +... |++++|++.++
T Consensus 91 ~eA~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~-g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKV---KPHDKDAKMKYQECNKIVKQ-KAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHH---STTCTTHHHHHHHHHHHHHH-HHHCCC-----
T ss_pred HHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHH-HHHHHHhcccc
Confidence 9999999998754 56666666666665 7777 89999999888
No 185
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.99 E-value=1.4e-05 Score=59.56 Aligned_cols=85 Identities=9% Similarity=-0.078 Sum_probs=40.9
Q ss_pred hCChhhHHHHHHHHHhcC--CCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 038748 148 ADRVKDAITTFDVMEQYG--CKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKK 225 (482)
Q Consensus 148 ~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 225 (482)
.|++++|+..|++..+.+ -+.+...+..+..++...|++++|...|++.....+.+..++..+..++...|++++|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 345555555555555432 111233444555555555555555555555433334445555555555555555555555
Q ss_pred HHHHhHH
Q 038748 226 TFGEMVI 232 (482)
Q Consensus 226 ~~~~~~~ 232 (482)
.|++...
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555543
No 186
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.98 E-value=1.9e-05 Score=71.33 Aligned_cols=93 Identities=10% Similarity=0.074 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHh------------------hHHHHHHHHHhcCChHhHHHHHHHhh
Q 038748 136 ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVF------------------ALNSLLSAICRDGKTIDAWQFLRVVD 197 (482)
Q Consensus 136 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------------------~~~~ll~~~~~~g~~~~a~~~~~~~~ 197 (482)
..+..+...+.+.|++++|...|+...... |+.. .|..+..+|.+.|++++|+..++...
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al 257 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL 257 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 335555566666677777777776665532 3222 33444444444444444444444433
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 038748 198 GRIKPDNDTYAILLEGWEKERDVANAKKTFGEM 230 (482)
Q Consensus 198 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 230 (482)
...+.+...|..+..+|...|++++|...|++.
T Consensus 258 ~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~a 290 (338)
T 2if4_A 258 TEEEKNPKALFRRGKAKAELGQMDSARDDFRKA 290 (338)
T ss_dssp HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHT
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 222334444444444444444444444444444
No 187
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.96 E-value=9.8e-05 Score=67.52 Aligned_cols=138 Identities=11% Similarity=-0.034 Sum_probs=93.3
Q ss_pred HHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 038748 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEK 216 (482)
Q Consensus 137 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 216 (482)
.+..+...+.+.|++++|++.|++..+.- +... ..... +......+.+..+|..+..+|.+
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~~----------~~~~~-------~~~~~~~~~~~~~~~nla~~~~~ 285 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGSR----------AAAED-------ADGAKLQPVALSCVLNIGACKLK 285 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHHH----------HHSCH-------HHHGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcCc----------cccCh-------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 36666777777788888888777776520 1000 00011 11111122355678888888888
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHH
Q 038748 217 ERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGA 296 (482)
Q Consensus 217 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 296 (482)
.|++++|+..+++.. .+.|++..++..+..++... |++++|++.|++..+.. +-+...+..+...+...++.+++
T Consensus 286 ~g~~~~A~~~~~~al---~~~p~~~~a~~~lg~~~~~~-g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 286 MSDWQGAVDSCLEAL---EIDPSNTKALYRRAQGWQGL-KEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp TTCHHHHHHHHHHHH---TTCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHH---HhCchhHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999888886 45777788888888888888 89999999998888753 23556666677777777777666
Q ss_pred HH
Q 038748 297 EF 298 (482)
Q Consensus 297 ~~ 298 (482)
.+
T Consensus 361 ~k 362 (370)
T 1ihg_A 361 EK 362 (370)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 188
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.94 E-value=0.00012 Score=58.14 Aligned_cols=96 Identities=9% Similarity=0.028 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHhhCChhhHHHHHHHHHhc--------CC---------CCCHhhHHHHHHHHHhcCChHhHHHHHHHhhC
Q 038748 136 ATFASVFSSYVVADRVKDAITTFDVMEQY--------GC---------KHDVFALNSLLSAICRDGKTIDAWQFLRVVDG 198 (482)
Q Consensus 136 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~--------~~---------~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 198 (482)
..+......+.+.|++++|+..|....+. .. +.+...|..+..+|.+.|++++|+..++....
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 34555566666667777777766666543 00 01123444444455555555555555544333
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 038748 199 RIKPDNDTYAILLEGWEKERDVANAKKTFGEMV 231 (482)
Q Consensus 199 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 231 (482)
..+.+...|..+..+|...|++++|...|++..
T Consensus 92 ~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al 124 (162)
T 3rkv_A 92 REETNEKALFRRAKARIAAWKLDEAEEDLKLLL 124 (162)
T ss_dssp HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHH
Confidence 233444455555555555555555555555544
No 189
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.94 E-value=5.2e-05 Score=68.49 Aligned_cols=131 Identities=11% Similarity=-0.038 Sum_probs=82.4
Q ss_pred HhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCH-----------------HHHHHHHHHHHhhCChhhHHHHHHHHHh
Q 038748 101 PYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSL-----------------ATFASVFSSYVVADRVKDAITTFDVMEQ 163 (482)
Q Consensus 101 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-----------------~~~~~li~~~~~~~~~~~a~~~~~~~~~ 163 (482)
...+..+...+.+.|++++|...|++.....+.+. .+|..+..+|.+.|++++|+..++...+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 258 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT 258 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34567777888889999999999999887654333 3788899999999999999999999988
Q ss_pred cCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHhHH
Q 038748 164 YGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEG-WEKERDVANAKKTFGEMVI 232 (482)
Q Consensus 164 ~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~ 232 (482)
... .+...|..+..+|...|++++|...|+......+.+...+..+... ....+..+.+..+|..|..
T Consensus 259 ~~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~ 327 (338)
T 2if4_A 259 EEE-KNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFK 327 (338)
T ss_dssp HCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------------
T ss_pred hCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 653 3678899999999999999999999999766445566666666655 3345667778888888863
No 190
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.93 E-value=3e-05 Score=57.75 Aligned_cols=87 Identities=7% Similarity=-0.107 Sum_probs=58.6
Q ss_pred cCCchhHhHHhhhhhcCC-CCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHH
Q 038748 78 YSHPGPAVKFFRWSAYQL-NDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAIT 156 (482)
Q Consensus 78 ~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 156 (482)
.|+++.|+..|+...... ..+.+...|..+...+...|++++|+..|++..+..+.+..++..+..++...|++++|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 366677777777666521 0233456677777777777777777777777777777677777777777777777777777
Q ss_pred HHHHHHhc
Q 038748 157 TFDVMEQY 164 (482)
Q Consensus 157 ~~~~~~~~ 164 (482)
.|++..+.
T Consensus 83 ~~~~al~~ 90 (117)
T 3k9i_A 83 LLLKIIAE 90 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77777664
No 191
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.90 E-value=2.1e-05 Score=57.71 Aligned_cols=93 Identities=10% Similarity=-0.082 Sum_probs=63.0
Q ss_pred CHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCC-------Hhh
Q 038748 100 SPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHD-------VFA 172 (482)
Q Consensus 100 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-------~~~ 172 (482)
+...|..+...+...|++++|++.|++.....+.+...+..+..++...|++++|++.|+...+.. |+ ...
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~ 80 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--STAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SSTTSHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCccHHHHHHHH
Confidence 455677777777778888888888888777777677777777778888888888888887777643 33 334
Q ss_pred HHHHHHHHHhcCChHhHHHHHH
Q 038748 173 LNSLLSAICRDGKTIDAWQFLR 194 (482)
Q Consensus 173 ~~~ll~~~~~~g~~~~a~~~~~ 194 (482)
+..+..++...|+.+.|...++
T Consensus 81 ~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHHhHhhhHhHHH
Confidence 4445555555555555544333
No 192
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.89 E-value=7.8e-05 Score=59.16 Aligned_cols=97 Identities=14% Similarity=-0.011 Sum_probs=77.1
Q ss_pred HhhHHHHHHHHhhCCCcHHHHHHHHHHHhc------------------CCCCHHHHHHHHHHHHhhCChhhHHHHHHHHH
Q 038748 101 PYAWNLVVDLLGKNCLFDAMWDAIKSMKKE------------------NVLSLATFASVFSSYVVADRVKDAITTFDVME 162 (482)
Q Consensus 101 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------------------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 162 (482)
...+......+.+.|++++|+..|.+.... .+....+|..+..+|.+.|++++|+..++...
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 355667777888888888888888887775 33345678888888999999999999999888
Q ss_pred hcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhC
Q 038748 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDG 198 (482)
Q Consensus 163 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 198 (482)
+... .+...|..+..++...|++++|...|+....
T Consensus 91 ~~~p-~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 91 KREE-TNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hcCC-cchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 8653 3677888888899999999999998888554
No 193
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.89 E-value=0.00092 Score=64.74 Aligned_cols=174 Identities=8% Similarity=-0.044 Sum_probs=133.5
Q ss_pred cCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCC----------cHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 038748 78 YSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCL----------FDAMWDAIKSMKKENVLSLATFASVFSSYVV 147 (482)
Q Consensus 78 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 147 (482)
....++|++.++.+.. -.+-+..+|+.--..+...|+ ++++++.++.+.+.++-+..+|+.-..++.+
T Consensus 42 ~~~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 42 GELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR 119 (567)
T ss_dssp TCCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 3445778888887776 444556778777777766666 8899999999999888888888888888888
Q ss_pred hC--ChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcC-ChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-------
Q 038748 148 AD--RVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDG-KTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKE------- 217 (482)
Q Consensus 148 ~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~------- 217 (482)
.| +++++++.++++.+... -+..+|+.-..++.+.| .++++.+.++++.+..+-|...|+.....+.+.
T Consensus 120 l~~~~~~~el~~~~k~l~~d~-~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 120 LPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred cccccHHHHHHHHHHHHhhcc-ccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 88 66999999999988764 37788888888888888 788888888887766777888888877776663
Q ss_pred -------CCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCCh
Q 038748 218 -------RDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGI 258 (482)
Q Consensus 218 -------~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 258 (482)
+.++++.+.+++... +.|++..+|+-.-..+... ++.
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~---~~P~~~saW~y~~~ll~~~-~~~ 242 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFF---TDPNDQSAWFYHRWLLGRA-EPH 242 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHH---HCSSCSHHHHHHHHHHSCC-CCC
T ss_pred ccccccHHHHHHHHHHHHHHHh---hCCCCccHHHHHHHHHhcC-CCc
Confidence 456778888877764 3777777887766666655 553
No 194
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.87 E-value=0.0011 Score=64.11 Aligned_cols=176 Identities=5% Similarity=-0.119 Sum_probs=135.9
Q ss_pred hCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCC----------hhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHh
Q 038748 113 KNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADR----------VKDAITTFDVMEQYGCKHDVFALNSLLSAICR 182 (482)
Q Consensus 113 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 182 (482)
.....++|++.++.+...++.+..+|+.--.++...|+ ++++++.++.+.+...+ +..+|+.-..++.+
T Consensus 41 ~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 41 AGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSR 119 (567)
T ss_dssp TTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 33445688999999999998888888887777777777 89999999999987643 77888888888888
Q ss_pred cC--ChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHcc-----
Q 038748 183 DG--KTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKER-DVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG----- 254 (482)
Q Consensus 183 ~g--~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~----- 254 (482)
.| ++++++++++.+.+..+.|..+|+.-..++.+.| .++++++.++++. ...|.+..+|+.....+...
T Consensus 120 l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I---~~~p~n~saW~~r~~ll~~l~~~~~ 196 (567)
T 1dce_A 120 LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLI---TRNFSNYSSWHYRSCLLPQLHPQPD 196 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTT---TTTCCCHHHHHHHHHHHHHHSCCCC
T ss_pred cccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHH---HHCCCCccHHHHHHHHHHhhccccc
Confidence 88 6799999999987767788999998888888888 8899999998886 55888888888877766552
Q ss_pred --------CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 038748 255 --------CDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNL 293 (482)
Q Consensus 255 --------~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 293 (482)
.+.++++++.+++..... +-+...|.-.-..+.+.++.
T Consensus 197 ~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~ 242 (567)
T 1dce_A 197 SGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPH 242 (567)
T ss_dssp SSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCC
T ss_pred ccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCc
Confidence 034577777777776643 23455666555555555553
No 195
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.70 E-value=0.00028 Score=52.03 Aligned_cols=80 Identities=5% Similarity=-0.100 Sum_probs=59.2
Q ss_pred hHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHH
Q 038748 83 PAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVME 162 (482)
Q Consensus 83 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 162 (482)
.|++.|+.... ..+.+...|..+...+...|++++|+..|++.....+.+...|..+..++...|++++|...|+...
T Consensus 3 ~a~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLA--QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHT--TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45666665555 3445677777788888888888888888888887777677777788888888888888888887776
Q ss_pred hc
Q 038748 163 QY 164 (482)
Q Consensus 163 ~~ 164 (482)
+.
T Consensus 81 ~~ 82 (115)
T 2kat_A 81 AA 82 (115)
T ss_dssp HH
T ss_pred Hh
Confidence 53
No 196
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.70 E-value=0.0013 Score=50.33 Aligned_cols=112 Identities=11% Similarity=-0.023 Sum_probs=84.9
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhc----CCChHHH
Q 038748 327 NETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMD----SDDPYVA 402 (482)
Q Consensus 327 ~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a 402 (482)
+++++|+..|++..+.|. ++.. +-..|...+.+++|.++|++..+.| +...+..|...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 567888888888888763 3333 5566666777888888888888865 55667777777776 7888899
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHh----cCChhHHHHHHHHHHHcCC
Q 038748 403 IKFWKYMIENHCSDLSETGNLLVAGLCD----MHMLPEAVKYAKGMAEKGI 449 (482)
Q Consensus 403 ~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~ 449 (482)
.+.|+...+.| +...+..|...|.. .+++++|.++|++..+.|.
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99988888765 34566777777777 7888889988888888774
No 197
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.69 E-value=0.00055 Score=53.12 Aligned_cols=28 Identities=14% Similarity=-0.014 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhhCChhhHHHHHHHHHhc
Q 038748 137 TFASVFSSYVVADRVKDAITTFDVMEQY 164 (482)
Q Consensus 137 ~~~~li~~~~~~~~~~~a~~~~~~~~~~ 164 (482)
.+......+...|++++|+..|++..+.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l 40 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEI 40 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 3455566667777777777777777764
No 198
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.68 E-value=0.00035 Score=54.23 Aligned_cols=99 Identities=16% Similarity=-0.012 Sum_probs=69.6
Q ss_pred hhHHHHHHHHHhcCChHhHHHHHHHhhCCCCC-------CH-----HHHHHHHHHHHhcCCHHHHHHHHHHhHHh----c
Q 038748 171 FALNSLLSAICRDGKTIDAWQFLRVVDGRIKP-------DN-----DTYAILLEGWEKERDVANAKKTFGEMVIE----V 234 (482)
Q Consensus 171 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-------~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~ 234 (482)
..+......+.+.|++++|+..|++...-.+. +. ..|..+..++.+.|++++|+..+++.+.- .
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 34555666777888888888888874331111 22 37888888888888888888888877631 1
Q ss_pred CCCCCChhhH----HHHHHHHHccCCChHHHHHHHHHHHH
Q 038748 235 GWDPDNVPAY----DSYLITLLKGCDGIYETVNSLKRMME 270 (482)
Q Consensus 235 ~~~p~~~~~~----~~l~~~~~~~~~~~~~a~~~~~~m~~ 270 (482)
.+.|++..+| .....++... |++++|+..|++..+
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~l-gr~eEAl~~y~kAle 130 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGL-GRGAEAMPEFKKVVE 130 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred cCCCchHHHHHHHHHhHHHHHHHC-CCHHHHHHHHHHHHh
Confidence 2377777777 7777777777 888888888877665
No 199
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.66 E-value=0.00046 Score=50.85 Aligned_cols=80 Identities=10% Similarity=-0.040 Sum_probs=53.0
Q ss_pred HHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 038748 366 EASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMA 445 (482)
Q Consensus 366 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 445 (482)
.+...|++..+.... +...+..+...|...|++++|.+.|+...+.. +.+...|..+..+|...|++++|...|++..
T Consensus 3 ~a~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQGTD-NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTTCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 455666666654432 55666677777777777777777777777643 2234566677777777777777777777765
Q ss_pred Hc
Q 038748 446 EK 447 (482)
Q Consensus 446 ~~ 447 (482)
+.
T Consensus 81 ~~ 82 (115)
T 2kat_A 81 AA 82 (115)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 200
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.64 E-value=0.0019 Score=49.36 Aligned_cols=111 Identities=9% Similarity=0.047 Sum_probs=64.1
Q ss_pred CChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh----cCCHHH
Q 038748 291 QNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVK----GRKLWE 366 (482)
Q Consensus 291 g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~ 366 (482)
+++++|.+.|.... +.| .++.. |-..|...+.+++|++.|++..+.| +...+..+-..|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa-~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKAC-ELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHH-HTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHH-cCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHH
Confidence 35566666666664 333 22322 4445555556666666666666653 34455555555555 566666
Q ss_pred HHHHHHHHHhCCCccChhhHHHHHHHHhc----CCChHHHHHHHHHHHHcC
Q 038748 367 ASGLFNEMVKNENVLNHENCRAAVRVYMD----SDDPYVAIKFWKYMIENH 413 (482)
Q Consensus 367 a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~ 413 (482)
|..+|++..+.| +...+..|...|.. .+++++|.+.|+...+.|
T Consensus 80 A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 80 AAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 666666666654 34455556666655 566666666666666655
No 201
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.59 E-value=0.00085 Score=46.69 Aligned_cols=80 Identities=13% Similarity=0.071 Sum_probs=51.5
Q ss_pred HhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHH
Q 038748 101 PYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAI 180 (482)
Q Consensus 101 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 180 (482)
...|..+...+...|++++|...|++.....+.+..++..+..++...|++++|...|++..+... .+...+..+..++
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~ 87 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCHHHHHHHHHHH
Confidence 455666666777777777777777777766666666677777777777777777777777666432 2344454444444
Q ss_pred H
Q 038748 181 C 181 (482)
Q Consensus 181 ~ 181 (482)
.
T Consensus 88 ~ 88 (91)
T 1na3_A 88 Q 88 (91)
T ss_dssp H
T ss_pred H
Confidence 3
No 202
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.58 E-value=0.00026 Score=66.88 Aligned_cols=89 Identities=11% Similarity=-0.119 Sum_probs=52.8
Q ss_pred HHhcCChHhHHHHHHHhhC----CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHhHHh-----cCCCCCChhhHHH
Q 038748 180 ICRDGKTIDAWQFLRVVDG----RIKP----DNDTYAILLEGWEKERDVANAKKTFGEMVIE-----VGWDPDNVPAYDS 246 (482)
Q Consensus 180 ~~~~g~~~~a~~~~~~~~~----~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~p~~~~~~~~ 246 (482)
+...|++++|+.++++... -+.+ ...+++.|..+|...|++++|+.++++...- ..-.|+...+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 3456777777777765321 1112 2456777777777777777777777665431 1223444455666
Q ss_pred HHHHHHccCCChHHHHHHHHHHH
Q 038748 247 YLITLLKGCDGIYETVNSLKRMM 269 (482)
Q Consensus 247 l~~~~~~~~~~~~~a~~~~~~m~ 269 (482)
|...+... |++++|+.++++..
T Consensus 399 La~~~~~~-G~~~eA~~~~~~Al 420 (490)
T 3n71_A 399 AGLTNWHA-GHIEVGHGMICKAY 420 (490)
T ss_dssp HHHHHHHT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHC-CCHHHHHHHHHHHH
Confidence 66666666 66666666666544
No 203
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.57 E-value=8e-05 Score=54.49 Aligned_cols=23 Identities=13% Similarity=0.148 Sum_probs=9.0
Q ss_pred HHHHHHHhhCChhhHHHHHHHHH
Q 038748 140 SVFSSYVVADRVKDAITTFDVME 162 (482)
Q Consensus 140 ~li~~~~~~~~~~~a~~~~~~~~ 162 (482)
.+...+...|++++|++.|+...
T Consensus 9 ~~g~~~~~~~~~~~A~~~~~~al 31 (111)
T 2l6j_A 9 EQGNSLFKQGLYREAVHCYDQLI 31 (111)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Confidence 33333333344444444443333
No 204
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.47 E-value=0.00059 Score=48.84 Aligned_cols=67 Identities=15% Similarity=0.107 Sum_probs=54.6
Q ss_pred CCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhc
Q 038748 98 KHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQY 164 (482)
Q Consensus 98 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 164 (482)
+-+...|..+...+...|++++|+..|++..+.++.+..+|..+..+|...|++++|.+.|++..+.
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3466778888888888888888888888888888777778888888888888888888888877653
No 205
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.44 E-value=0.0012 Score=45.92 Aligned_cols=59 Identities=14% Similarity=0.138 Sum_probs=26.0
Q ss_pred HHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 038748 173 LNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMV 231 (482)
Q Consensus 173 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 231 (482)
+..+...+...|++++|...|++.....+.+..++..+..++.+.|++++|...|++..
T Consensus 12 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 70 (91)
T 1na3_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70 (91)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33344444444444444444444322223334444444444444555555555444443
No 206
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.25 E-value=0.00042 Score=53.67 Aligned_cols=108 Identities=9% Similarity=-0.057 Sum_probs=56.4
Q ss_pred HhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 038748 146 VVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKK 225 (482)
Q Consensus 146 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 225 (482)
.+.+.+++|.+.++...+... .+...|+.+-.++...++++.+....+ .+++|+.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P-~~aea~~n~G~~l~~l~~~~~g~~al~------------------------~~~eAi~ 67 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNP-LDADNLTRWGGVLLELSQFHSISDAKQ------------------------MIQEAIT 67 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHSCHHHHHH------------------------HHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHhcccchhhhhHh------------------------HHHHHHH
Confidence 344556666666666665542 255555555555555554432221111 1446666
Q ss_pred HHHHhHHhcCCCCCChhhHHHHHHHHHccCC-----------ChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 038748 226 TFGEMVIEVGWDPDNVPAYDSYLITLLKGCD-----------GIYETVNSLKRMMERGCNPGMTFFKLAF 284 (482)
Q Consensus 226 ~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-----------~~~~a~~~~~~m~~~~~~~~~~~~~~li 284 (482)
.|++.. .+.|+...+|..+..++... | ++++|++.|++..+. .|+...|...+
T Consensus 68 ~le~AL---~ldP~~~~A~~~LG~ay~~l-g~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al 131 (158)
T 1zu2_A 68 KFEEAL---LIDPKKDEAVWCIGNAYTSF-AFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSL 131 (158)
T ss_dssp HHHHHH---HHCTTCHHHHHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HHHHHH---HhCcCcHHHHHHHHHHHHHh-cccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 666654 33565556666666666554 3 566666666666553 34444443333
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.22 E-value=0.0015 Score=46.58 Aligned_cols=65 Identities=23% Similarity=0.207 Sum_probs=40.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHH
Q 038748 202 PDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMME 270 (482)
Q Consensus 202 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~ 270 (482)
.+...+..+..+|...|++++|+..|++..+. .|++..+|..+..++... |++++|++.|++..+
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~-g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVET---DPDYVGTYYHLGKLYERL-DRTDDAIDTYAQGIE 69 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCTHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHh
Confidence 35556666666666666666666666666533 555555666666666666 666666666665543
No 208
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.20 E-value=0.00099 Score=51.56 Aligned_cols=65 Identities=5% Similarity=-0.156 Sum_probs=29.9
Q ss_pred hhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCc----------HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhh
Q 038748 82 GPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLF----------DAMWDAIKSMKKENVLSLATFASVFSSYVVA 148 (482)
Q Consensus 82 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~ 148 (482)
++|.+.++.... -.+.+...|+.+..++...+++ ++|+..|++..+.++....+|..+..+|...
T Consensus 19 eeA~~~~~~Ai~--l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 19 EQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 444444444333 2233444444444444444332 2555555555555444444555555555444
No 209
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.02 E-value=0.052 Score=55.31 Aligned_cols=75 Identities=9% Similarity=0.011 Sum_probs=39.4
Q ss_pred HHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 038748 139 ASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKER 218 (482)
Q Consensus 139 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 218 (482)
..++..+.+.|.+++|+++.+.-. .-...+...|+++.|.++.+.+ .+...|..+...+.+.|
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~~~~~~~-----~~~~~W~~la~~al~~~ 695 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLARDLLTDE-----SAEMKWRALGDASLQRF 695 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHHHHHTTC-----CCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHHHHHHhh-----CcHhHHHHHHHHHHHcC
Confidence 445555555555555554442110 1122334556666666554433 24556666666666666
Q ss_pred CHHHHHHHHHHh
Q 038748 219 DVANAKKTFGEM 230 (482)
Q Consensus 219 ~~~~a~~~~~~~ 230 (482)
+++.|++.|..+
T Consensus 696 ~~~~A~~~y~~~ 707 (814)
T 3mkq_A 696 NFKLAIEAFTNA 707 (814)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHc
Confidence 666666666655
No 210
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.01 E-value=0.022 Score=58.10 Aligned_cols=151 Identities=12% Similarity=0.069 Sum_probs=79.8
Q ss_pred HhhCChhhHHH-HHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 038748 146 VVADRVKDAIT-TFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAK 224 (482)
Q Consensus 146 ~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 224 (482)
...+++++|.+ ++..+ ++......++..+.+.|..+.|.++.+. .. .-.......|+++.|.
T Consensus 610 ~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~--------~~---~~f~~~l~~~~~~~A~ 672 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPD--------QD---QKFELALKVGQLTLAR 672 (814)
T ss_dssp HHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCC--------HH---HHHHHHHHHTCHHHHH
T ss_pred HHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCC--------cc---hheehhhhcCCHHHHH
Confidence 34566666655 33111 1122235566666777777777654421 11 1123345567777777
Q ss_pred HHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 038748 225 KTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMV 304 (482)
Q Consensus 225 ~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 304 (482)
++.+.+. +...|..+...+.+. ++++.|.+.|..+.. |..+...+...|+.+...++-+...
T Consensus 673 ~~~~~~~--------~~~~W~~la~~al~~-~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~ 734 (814)
T 3mkq_A 673 DLLTDES--------AEMKWRALGDASLQR-FNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAE 734 (814)
T ss_dssp HHHTTCC--------CHHHHHHHHHHHHHT-TCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhC--------cHhHHHHHHHHHHHc-CCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHH
Confidence 7654331 455777777777777 777777777776543 3344444555666655554444432
Q ss_pred cccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038748 305 GRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDE 338 (482)
Q Consensus 305 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 338 (482)
..| -++.-..+|.+.|++++|++++.+
T Consensus 735 -~~~------~~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 735 -TTG------KFNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp -HTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred -HcC------chHHHHHHHHHcCCHHHHHHHHHH
Confidence 222 122233334445555555555543
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.84 E-value=0.027 Score=50.23 Aligned_cols=65 Identities=9% Similarity=0.013 Sum_probs=36.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038748 310 RPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK 376 (482)
Q Consensus 310 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 376 (482)
+.+..+|..+...+...|++++|...+++....+ |+...|..+-..+.-.|++++|.+.|++...
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3345555555544555566666666666665543 4544454455555556666666666665555
No 212
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.80 E-value=0.0056 Score=56.82 Aligned_cols=88 Identities=13% Similarity=-0.142 Sum_probs=60.0
Q ss_pred hcCCHHHHHHHHHHHHhC---CCcc----ChhhHHHHHHHHhcCCChHHHHHHHHHHHHc-----C-CCCCh-hhHHHHH
Q 038748 360 KGRKLWEASGLFNEMVKN---ENVL----NHENCRAAVRVYMDSDDPYVAIKFWKYMIEN-----H-CSDLS-ETGNLLV 425 (482)
Q Consensus 360 ~~g~~~~a~~~~~~~~~~---~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~-~~p~~-~~~~~li 425 (482)
..|++++|..++++.++. -+.| ...+++.|..+|...|++++|..++++..+. | -.|+. .+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 467788888888776652 1222 2346777888888888888888888876631 2 12333 5677788
Q ss_pred HHHHhcCChhHHHHHHHHHHHc
Q 038748 426 AGLCDMHMLPEAVKYAKGMAEK 447 (482)
Q Consensus 426 ~~~~~~g~~~~A~~~~~~m~~~ 447 (482)
..|...|++++|+.++++..+-
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHH
Confidence 8888888888888888877654
No 213
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.79 E-value=0.004 Score=57.75 Aligned_cols=87 Identities=10% Similarity=-0.034 Sum_probs=56.9
Q ss_pred hcCCHHHHHHHHHHHHHC---CCCCC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C-Ccc-ChhhHHHHH
Q 038748 325 YSNETGAAMKLLDEMVYN---GAFPD----IQTYNILFEFLVKGRKLWEASGLFNEMVKN-----E-NVL-NHENCRAAV 390 (482)
Q Consensus 325 ~~~~~~~a~~~~~~m~~~---g~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~-~~~-~~~~~~~li 390 (482)
..|++++|+.++++..+. -+-|+ ..+++.+..+|...|++++|..++++.++. | -.| ...+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 456777888777766552 11121 256777777788888888888887776643 2 122 234577777
Q ss_pred HHHhcCCChHHHHHHHHHHHH
Q 038748 391 RVYMDSDDPYVAIKFWKYMIE 411 (482)
Q Consensus 391 ~~~~~~~~~~~a~~~~~~m~~ 411 (482)
..|...|++++|..++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 778888888888887777655
No 214
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.76 E-value=0.0055 Score=43.32 Aligned_cols=58 Identities=7% Similarity=0.099 Sum_probs=37.1
Q ss_pred HHHHhhCCCcHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHhhCChhhHHHHHHHHHhcC
Q 038748 108 VDLLGKNCLFDAMWDAIKSMKKENVLSLA-TFASVFSSYVVADRVKDAITTFDVMEQYG 165 (482)
Q Consensus 108 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 165 (482)
...+...|++++|+..|++..+..+.+.. .+..+..++...|++++|.+.|+...+..
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 34455566666666666666666655555 66666666666666666666666666543
No 215
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.74 E-value=0.0089 Score=55.52 Aligned_cols=91 Identities=11% Similarity=-0.030 Sum_probs=68.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCC---Ccc----ChhhHHHHHHHHhcCCChHHHHHHHHHHHHc-----C-CCCCh-hh
Q 038748 355 FEFLVKGRKLWEASGLFNEMVKNE---NVL----NHENCRAAVRVYMDSDDPYVAIKFWKYMIEN-----H-CSDLS-ET 420 (482)
Q Consensus 355 l~~~~~~g~~~~a~~~~~~~~~~~---~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~-~~p~~-~~ 420 (482)
+..+...|++++|..++++..+.. +.| ...+++.+..+|...|++++|+.++++..+. | -.|+. .+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 444567788999999998887641 122 2346788888999999999999999887631 2 22333 57
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH
Q 038748 421 GNLLVAGLCDMHMLPEAVKYAKGMA 445 (482)
Q Consensus 421 ~~~li~~~~~~g~~~~A~~~~~~m~ 445 (482)
++.|...|...|++++|+.++++..
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 8889999999999999999998874
No 216
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.73 E-value=0.016 Score=40.44 Aligned_cols=68 Identities=10% Similarity=0.003 Sum_probs=56.3
Q ss_pred CCCHhhHHHHHHHHhhCCC---cHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcC
Q 038748 98 KHSPYAWNLVVDLLGKNCL---FDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYG 165 (482)
Q Consensus 98 ~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 165 (482)
+.|+..+..+..++...++ .++|..+|++....++.+..+...+...+.+.|++++|+..|+.+.+..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 4567777777777765544 7899999999999888888888888899999999999999999988864
No 217
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.57 E-value=0.012 Score=54.73 Aligned_cols=89 Identities=8% Similarity=-0.087 Sum_probs=44.0
Q ss_pred HHHhcCChHhHHHHHHHhhC----CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHhHHh-----cCCCCCChhhHH
Q 038748 179 AICRDGKTIDAWQFLRVVDG----RIKP----DNDTYAILLEGWEKERDVANAKKTFGEMVIE-----VGWDPDNVPAYD 245 (482)
Q Consensus 179 ~~~~~g~~~~a~~~~~~~~~----~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~p~~~~~~~ 245 (482)
.+...|++++|++++++... -+.| ...+++.+..+|...|++++|+.++++...- ....|+...+++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 34445566666666655322 1111 1345555566666666666666665554421 122333334455
Q ss_pred HHHHHHHccCCChHHHHHHHHHH
Q 038748 246 SYLITLLKGCDGIYETVNSLKRM 268 (482)
Q Consensus 246 ~l~~~~~~~~~~~~~a~~~~~~m 268 (482)
.+...+... |++++|+.++++.
T Consensus 376 nLa~~~~~~-g~~~eA~~~~~~A 397 (429)
T 3qwp_A 376 KVGKLQLHQ-GMFPQAMKNLRLA 397 (429)
T ss_dssp HHHHHHHHT-TCHHHHHHHHHHH
T ss_pred HHHHHHHhc-CCHHHHHHHHHHH
Confidence 555555555 5555555555544
No 218
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.51 E-value=0.075 Score=47.43 Aligned_cols=75 Identities=8% Similarity=-0.057 Sum_probs=47.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHH
Q 038748 200 IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTF 279 (482)
Q Consensus 200 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 279 (482)
.+.+..+|..+...+...|++++|...+++...- .| +...|..+...+... |++++|.+.|++.... .|...+
T Consensus 273 ~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L---n~-s~~a~~llG~~~~~~-G~~~eA~e~~~~AlrL--~P~~~t 345 (372)
T 3ly7_A 273 LNNLSIIYQIKAVSALVKGKTDESYQAINTGIDL---EM-SWLNYVLLGKVYEMK-GMNREAADAYLTAFNL--RPGANT 345 (372)
T ss_dssp GTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CC-CHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH--SCSHHH
T ss_pred CCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc---CC-CHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhc--CCCcCh
Confidence 3556667777666666667777777777777643 35 455555555666666 7777777777776664 355555
Q ss_pred HH
Q 038748 280 FK 281 (482)
Q Consensus 280 ~~ 281 (482)
|.
T Consensus 346 ~~ 347 (372)
T 3ly7_A 346 LY 347 (372)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 219
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.32 E-value=0.027 Score=39.60 Aligned_cols=51 Identities=18% Similarity=0.197 Sum_probs=21.5
Q ss_pred HhcCChHhHHHHHHHhhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhH
Q 038748 181 CRDGKTIDAWQFLRVVDGRIKPDND-TYAILLEGWEKERDVANAKKTFGEMV 231 (482)
Q Consensus 181 ~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~ 231 (482)
...|++++|...|+......+.+.. .+..+..+|...|++++|...|++..
T Consensus 11 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 62 (99)
T 2kc7_A 11 INQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAI 62 (99)
T ss_dssp HHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3344444444444443222223333 44444444444444444444444443
No 220
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.16 E-value=0.066 Score=45.81 Aligned_cols=84 Identities=6% Similarity=-0.066 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHhCCCccC---hhhHHHHHHHHhc-----CCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc-CChh
Q 038748 365 WEASGLFNEMVKNENVLN---HENCRAAVRVYMD-----SDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDM-HMLP 435 (482)
Q Consensus 365 ~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-g~~~ 435 (482)
..|...+++.++. .|+ ...|..+...|.. -|+.++|.+.|++.++.+..-+..++..+...++.. |+.+
T Consensus 180 ~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 180 HAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 3444445555442 233 3345555555555 366666666666666532111244555555555553 6666
Q ss_pred HHHHHHHHHHHcCCC
Q 038748 436 EAVKYAKGMAEKGIQ 450 (482)
Q Consensus 436 ~A~~~~~~m~~~~~~ 450 (482)
++.+++++.+.....
T Consensus 258 ~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 258 GFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHcCCCC
Confidence 666666666665544
No 221
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.14 E-value=0.052 Score=41.48 Aligned_cols=87 Identities=13% Similarity=0.042 Sum_probs=51.9
Q ss_pred hhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcC---ChHhHHHHHHHhhCCCCC--CHHHHHHHHHHHHhcCCHHHHHH
Q 038748 151 VKDAITTFDVMEQYGCKHDVFALNSLLSAICRDG---KTIDAWQFLRVVDGRIKP--DNDTYAILLEGWEKERDVANAKK 225 (482)
Q Consensus 151 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~ 225 (482)
...+.+-|.+..+.|. ++..+...+..++++++ +.+++..+|+.+-+...| +...+-.+.-+|.+.|++++|.+
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 3344555555544443 56666666666666666 455666666664332222 34455566667777888888888
Q ss_pred HHHHhHHhcCCCCCCh
Q 038748 226 TFGEMVIEVGWDPDNV 241 (482)
Q Consensus 226 ~~~~~~~~~~~~p~~~ 241 (482)
.++.+.+ +.|++.
T Consensus 93 y~~~lL~---ieP~n~ 105 (152)
T 1pc2_A 93 YVRGLLQ---TEPQNN 105 (152)
T ss_dssp HHHHHHH---HCTTCH
T ss_pred HHHHHHh---cCCCCH
Confidence 8877764 366544
No 222
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.93 E-value=0.08 Score=36.84 Aligned_cols=66 Identities=8% Similarity=-0.002 Sum_probs=33.1
Q ss_pred CCHHHHHHHHHHHHhcCC---HHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHc
Q 038748 202 PDNDTYAILLEGWEKERD---VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMER 271 (482)
Q Consensus 202 ~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~ 271 (482)
.|...+..+..++...++ .++|..++++... ..|++..+...+...+... |++++|+..|+.+.+.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~---~dp~~~rA~~~lg~~~~~~-g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQ---LEPYNEAALSLIANDHFIS-FRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH---HCcCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhh
Confidence 344444444444433332 4555555555542 2555555555555555555 5555555555555543
No 223
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.92 E-value=0.45 Score=37.35 Aligned_cols=45 Identities=11% Similarity=0.113 Sum_probs=20.1
Q ss_pred hhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhh
Q 038748 147 VADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVD 197 (482)
Q Consensus 147 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 197 (482)
+.|+++.|.++.+.+ .+...|..|.......|+++-|+..|....
T Consensus 17 ~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp HTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred hcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 344444444444333 133444444444444444444444444433
No 224
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.87 E-value=0.046 Score=41.80 Aligned_cols=84 Identities=14% Similarity=0.158 Sum_probs=66.0
Q ss_pred CHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCC---ChHHHHHHHHHHHHcCCCC--ChhhHHHHHHHHHhcCChhHH
Q 038748 363 KLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSD---DPYVAIKFWKYMIENHCSD--LSETGNLLVAGLCDMHMLPEA 437 (482)
Q Consensus 363 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~A 437 (482)
.+..+.+-|.+....+. ++..+...+..++++.+ ++++++.+++...+.+ .| +...+-.+.-+|.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 45667777777777665 57777778888888888 6779999999998865 34 345666677788999999999
Q ss_pred HHHHHHHHHcC
Q 038748 438 VKYAKGMAEKG 448 (482)
Q Consensus 438 ~~~~~~m~~~~ 448 (482)
.++++.+.+..
T Consensus 91 ~~y~~~lL~ie 101 (152)
T 1pc2_A 91 LKYVRGLLQTE 101 (152)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHhcC
Confidence 99999998765
No 225
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.50 E-value=0.11 Score=37.04 Aligned_cols=65 Identities=2% Similarity=-0.101 Sum_probs=40.0
Q ss_pred CHhhHHHHHHHHhhCCCcHHHHHHHHHHHhc-------CCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhc
Q 038748 100 SPYAWNLVVDLLGKNCLFDAMWDAIKSMKKE-------NVLSLATFASVFSSYVVADRVKDAITTFDVMEQY 164 (482)
Q Consensus 100 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 164 (482)
+...+..+...+.+.|++..|...|+...+. +......+..+..++.+.|+++.|...+++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 4455566666666667777777666665543 2234556666666666666666666666666653
No 226
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.43 E-value=1.5 Score=40.77 Aligned_cols=96 Identities=15% Similarity=0.127 Sum_probs=56.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhhcccCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCH--hh
Q 038748 281 KLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD----THMYNMMISLYCYSNETGAAMKLLDEMVY----NGAFPDI--QT 350 (482)
Q Consensus 281 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~g~~p~~--~~ 350 (482)
..+...+...|++.+|.+++..+..+..-.-+ ...+...++.|...+++.+|..++.+... ....|+. ..
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 44566667777777777777776422111111 34556666777777777777777776532 2122221 23
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038748 351 YNILFEFLVKGRKLWEASGLFNEMVK 376 (482)
Q Consensus 351 ~~~ll~~~~~~g~~~~a~~~~~~~~~ 376 (482)
+...+..+...+++.+|...|.++.+
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 45555556667777777777666654
No 227
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.35 E-value=0.34 Score=35.54 Aligned_cols=93 Identities=14% Similarity=0.072 Sum_probs=61.3
Q ss_pred HhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHh---HHHHHHHhhCCCCC--CHHHHHHHHHHHHhcCCH
Q 038748 146 VVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTID---AWQFLRVVDGRIKP--DNDTYAILLEGWEKERDV 220 (482)
Q Consensus 146 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~---a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~ 220 (482)
........+.+-|......|. ++..+--.+..+++++.+... ++.+++.+-....| .....-.+.-++.+.|++
T Consensus 12 ~~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y 90 (126)
T 1nzn_A 12 VSVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEY 90 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCH
T ss_pred CCHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhH
Confidence 333445555666665555554 666666667777777776555 77777776543323 344555667788899999
Q ss_pred HHHHHHHHHhHHhcCCCCCChh
Q 038748 221 ANAKKTFGEMVIEVGWDPDNVP 242 (482)
Q Consensus 221 ~~a~~~~~~~~~~~~~~p~~~~ 242 (482)
++|.+.++.+.+. .|++..
T Consensus 91 ~~A~~~~~~lL~~---eP~n~Q 109 (126)
T 1nzn_A 91 EKALKYVRGLLQT---EPQNNQ 109 (126)
T ss_dssp HHHHHHHHHHHHH---CTTCHH
T ss_pred HHHHHHHHHHHHh---CCCCHH
Confidence 9999999888754 776544
No 228
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.22 E-value=0.15 Score=36.30 Aligned_cols=62 Identities=10% Similarity=-0.054 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHhhCChhhHHHHHHHHHhcC------CCCCHhhHHHHHHHHHhcCChHhHHHHHHHh
Q 038748 135 LATFASVFSSYVVADRVKDAITTFDVMEQYG------CKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196 (482)
Q Consensus 135 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 196 (482)
...+..+...+.+.|++..|...|+...+.. -.+....+..|..++.+.|+++.|...+++.
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~a 72 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKL 72 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 3445556666666677777776666655421 0122334444555555555555555555443
No 229
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.20 E-value=0.65 Score=34.33 Aligned_cols=66 Identities=15% Similarity=0.016 Sum_probs=36.3
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCC
Q 038748 348 IQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHC 414 (482)
Q Consensus 348 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 414 (482)
...+...+..+...|+-++-.+++.++.. +..|++.....+..+|.+.|+..+|.+++.+.-++|+
T Consensus 91 se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 91 NEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 34444555555566666666666655433 2344555555566666666666666666666655554
No 230
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.98 E-value=0.33 Score=36.68 Aligned_cols=55 Identities=9% Similarity=-0.020 Sum_probs=34.6
Q ss_pred CCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 038748 396 SDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQV 451 (482)
Q Consensus 396 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 451 (482)
.+++++|.++|+.+++.+-.- ...|-....--.+.|+...|.+++.+.+..+.+|
T Consensus 73 i~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HHCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred hcCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 367777777777776542111 4455555555567777777777777777766543
No 231
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.91 E-value=1.3 Score=41.26 Aligned_cols=190 Identities=10% Similarity=0.076 Sum_probs=99.2
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCC---ChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----h
Q 038748 217 ERDVANAKKTFGEMVIEVGWDPD---NVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECL----T 289 (482)
Q Consensus 217 ~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~----~ 289 (482)
.|+++.|++.+..+.+......| .......++..+... ++++...+.+..+.+..... ......+++.+. .
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~-~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~ 106 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASR-NKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKS 106 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHH-SCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhc
Confidence 36777887777777654222222 233455666677777 78877777666554432121 222333333332 2
Q ss_pred cCChhHH--HHHHHHhhcccCCC-----CC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC---HhhHHHH
Q 038748 290 GQNLRGA--EFIWGAMVGRIGFR-----PD---THMYNMMISLYCYSNETGAAMKLLDEMVYN--GAFPD---IQTYNIL 354 (482)
Q Consensus 290 ~g~~~~a--~~~~~~~~~~~~~~-----~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~---~~~~~~l 354 (482)
....+.. ..+.... ..+. .. ......|...|...|++.+|.+++..+... |.... ...+...
T Consensus 107 ~~~~d~~~~~~~i~~l---~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q 183 (445)
T 4b4t_P 107 SKSLDLNTRISVIETI---RVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQ 183 (445)
T ss_dssp HCTTHHHHHHHHHHCC---SSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHH---HHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 2322221 1122111 1111 11 123355667777777777777777776542 22111 2345556
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh----CCCccC--hhhHHHHHHHHhcCCChHHHHHHHHHHHH
Q 038748 355 FEFLVKGRKLWEASGLFNEMVK----NENVLN--HENCRAAVRVYMDSDDPYVAIKFWKYMIE 411 (482)
Q Consensus 355 l~~~~~~g~~~~a~~~~~~~~~----~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 411 (482)
++.|...+++.+|..+++++.. ....|+ ...|...+..+...+++.+|.+.|.++.+
T Consensus 184 ~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 184 MELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 6677777777777777776532 111221 12345556666666777777776666553
No 232
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.70 E-value=0.91 Score=33.57 Aligned_cols=67 Identities=12% Similarity=0.012 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 038748 277 MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAF 345 (482)
Q Consensus 277 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 345 (482)
...+...+..+...|+-++..+++..+.. +.+|+....-.+..+|.+.|+..+|.+++.+.-+.|++
T Consensus 91 se~vd~ALd~lv~~~KkDqLdki~~~~l~--n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 91 NEHVNKALDILVIQGKRDKLEEIGREILK--NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHC----CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhccHhHHHHHHHHHhc--cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 34445555666666666666666666432 33455555666666666666666666666666666553
No 233
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.70 E-value=1.8 Score=37.05 Aligned_cols=18 Identities=6% Similarity=-0.010 Sum_probs=9.7
Q ss_pred HHHHHHHHhcCCCCHHHH
Q 038748 121 WDAIKSMKKENVLSLATF 138 (482)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~ 138 (482)
+.+++-+...++.+....
T Consensus 52 Lk~~e~Ll~~~P~~~~Ll 69 (301)
T 3u64_A 52 LKVYEALHLQNPAHRGLS 69 (301)
T ss_dssp HHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHhhCCCCHHHH
Confidence 455666666665444333
No 234
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=94.42 E-value=0.0088 Score=54.79 Aligned_cols=217 Identities=10% Similarity=0.052 Sum_probs=126.4
Q ss_pred CCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHH
Q 038748 99 HSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLS 178 (482)
Q Consensus 99 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 178 (482)
-|+..|..+|.+..+.|.+++-++.+...++. ..+...=+.|+-+|++.++..+-.+.+ . .|+..-...+.+
T Consensus 81 ~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~-~ke~~IDteLi~ayAk~~rL~elEefl----~---~~N~A~iq~VGD 152 (624)
T 3lvg_A 81 DDPSSYMEVVQAANTSGNWEELVKYLQMARKK-ARESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGD 152 (624)
T ss_dssp SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT-CCSTTTTHHHHHHHHTSCSSSTTTSTT----S---CCSSSCTHHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-hcccccHHHHHHHHHhhCcHHHHHHHH----c---CCCcccHHHHHH
Confidence 35566777778888888887777777665554 323333456777777777765543322 1 255555666667
Q ss_pred HHHhcCChHhHHHHHHHhhC---------------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCC
Q 038748 179 AICRDGKTIDAWQFLRVVDG---------------------RIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWD 237 (482)
Q Consensus 179 ~~~~~g~~~~a~~~~~~~~~---------------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 237 (482)
-|...|.++.|.-+|..+.. .-..++.||-.+-.+|...+.+.-|.-.--.+.- .
T Consensus 153 rcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIv----h 228 (624)
T 3lvg_A 153 RCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV----H 228 (624)
T ss_dssp HHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC----C
T ss_pred HHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcc----c
Confidence 77777777777666655432 1134667888888888888877766544333321 2
Q ss_pred CCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCC------
Q 038748 238 PDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRP------ 311 (482)
Q Consensus 238 p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~------ 311 (482)
|| ....++..|-.. |.+++.+.+++.-... -......|+.|.-.|++- ++++..+.++....+-+++.
T Consensus 229 ad---eL~elv~~YE~~-G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE 302 (624)
T 3lvg_A 229 AD---ELEELINYYQDR-GYFEELITMLEAALGL-ERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAE 302 (624)
T ss_dssp SS---CCSGGGSSSSTT-CCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHT
T ss_pred HH---HHHHHHHHHHhC-CCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 22 122334444455 7777777777765532 123456677766666654 44444444443322222221
Q ss_pred CHHHHHHHHHHHHhcCCHHHHH
Q 038748 312 DTHMYNMMISLYCYSNETGAAM 333 (482)
Q Consensus 312 ~~~~~~~li~~~~~~~~~~~a~ 333 (482)
....|.-++-.|+.-.+++.|.
T Consensus 303 ~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 303 QAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp TTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHhhHHHHHHHHhcchhHHHHH
Confidence 2345677777777777777654
No 235
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.30 E-value=1.5 Score=34.38 Aligned_cols=45 Identities=13% Similarity=0.087 Sum_probs=22.8
Q ss_pred hhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHH
Q 038748 112 GKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVM 161 (482)
Q Consensus 112 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 161 (482)
...|+++.|.++.+++ .+...|..|.......|+++-|.+.|...
T Consensus 16 L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 3445555555554443 23444555555555555555555555444
No 236
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=94.25 E-value=3.1e-05 Score=70.34 Aligned_cols=215 Identities=9% Similarity=0.131 Sum_probs=132.1
Q ss_pred CCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHH
Q 038748 99 HSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLS 178 (482)
Q Consensus 99 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 178 (482)
-.+.+|..+..+..+.+...+|++-|-+ . .|+..|..+|.+..+.|.+++-+..+.-.++.. -++..=+.|+-
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIk--A---~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ 124 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIK--A---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIF 124 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCC--C---SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHh--C---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHH
Confidence 3467899999999999988888654422 1 244558899999999999999999887776653 34455568999
Q ss_pred HHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhc------------------CCCCCC
Q 038748 179 AICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEV------------------GWDPDN 240 (482)
Q Consensus 179 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------------------~~~p~~ 240 (482)
+|++.+++.+.++++. .||..-...+.+-|...|.++.|.-+|..+..-. .-+..+
T Consensus 125 ayAk~~rL~elEefl~------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns 198 (624)
T 3lvg_A 125 ALAKTNRLAELEEFIN------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANS 198 (624)
T ss_dssp HHHTSCSSSTTTSTTS------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCS
T ss_pred HHHhhCcHHHHHHHHc------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999998776544332 4666666777888888888888877776542100 011224
Q ss_pred hhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCC-CCCHHHHHHH
Q 038748 241 VPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGF-RPDTHMYNMM 319 (482)
Q Consensus 241 ~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~l 319 (482)
+.+|..+-.++... +.+.-|.-.--.+.-. +| -...++..|-..|.+++...+++.-+ |. .....+|+-|
T Consensus 199 ~ktWKeV~~ACvd~-~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEagl---glErAHmGmFTEL 269 (624)
T 3lvg_A 199 TRTWKEVCFACVDG-KEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAAL---GLERAHMGMFTEL 269 (624)
T ss_dssp SCSHHHHTHHHHHS-CTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHT---TSTTCCHHHHHHH
T ss_pred hhHHHHHHHHHhCc-hHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHh---CCCchhHHHHHHH
Confidence 44555555555555 5544443222222211 11 11234455556666666666666554 22 2345566666
Q ss_pred HHHHHhcCCHHHHHHHH
Q 038748 320 ISLYCYSNETGAAMKLL 336 (482)
Q Consensus 320 i~~~~~~~~~~~a~~~~ 336 (482)
.-.|++- ++++..+.+
T Consensus 270 aILYsKY-~PeKlmEHl 285 (624)
T 3lvg_A 270 AILYSKF-KPQKMREHL 285 (624)
T ss_dssp HHHHHSS-CTTHHHHHH
T ss_pred HHHHHhc-CHHHHHHHH
Confidence 6666654 344444443
No 237
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.62 E-value=0.33 Score=44.29 Aligned_cols=69 Identities=16% Similarity=0.133 Sum_probs=38.2
Q ss_pred HHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhC------CCCCCHHHHH
Q 038748 139 ASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDG------RIKPDNDTYA 208 (482)
Q Consensus 139 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~------~~~~~~~~~~ 208 (482)
..++..+...|++.++...+..+.... +.+...|..+|.++.+.|+..+|++.|+.+.. |+.|+..+-.
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 344555555666666666655555432 12455566666666666666666666655432 5566555443
No 238
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.14 E-value=0.6 Score=46.21 Aligned_cols=127 Identities=13% Similarity=0.041 Sum_probs=81.8
Q ss_pred HHHHHHHhhCCC-cHHHHHHHHHHHhcCCCCHHHHH-HHHHHHHhhC-ChhhHHHHHHHHHhc------CCCC-CH----
Q 038748 105 NLVVDLLGKNCL-FDAMWDAIKSMKKENVLSLATFA-SVFSSYVVAD-RVKDAITTFDVMEQY------GCKH-DV---- 170 (482)
Q Consensus 105 ~~li~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~-~li~~~~~~~-~~~~a~~~~~~~~~~------~~~~-~~---- 170 (482)
..++..+...++ .+.|..+|+++....+.....+. .++..+...+ +--+|.+++.+..+. ...+ +.
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 344555555666 57899999999988764433333 3333332222 233455555544321 1111 11
Q ss_pred ------hhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 038748 171 ------FALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMV 231 (482)
Q Consensus 171 ------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 231 (482)
...+.-...+...|+++.|+++-++...-.+.+-.+|..|..+|...|+++.|+-.++.+.
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 1222223456678999999999988766567778999999999999999999999998873
No 239
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=92.95 E-value=0.57 Score=34.36 Aligned_cols=77 Identities=16% Similarity=0.037 Sum_probs=33.5
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhh---HHHHHHHHHhcCCCC--CHhhHHHHHHHHHhcCChHhHHHHH
Q 038748 119 AMWDAIKSMKKENVLSLATFASVFSSYVVADRVKD---AITTFDVMEQYGCKH--DVFALNSLLSAICRDGKTIDAWQFL 193 (482)
Q Consensus 119 ~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~---a~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~g~~~~a~~~~ 193 (482)
.+.+-|.+....+.++..+-..+..++++..+... ++.+++.+.+.+ .| .....-.|.-++.+.|++++|.+.+
T Consensus 19 ~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~ 97 (126)
T 1nzn_A 19 KFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYV 97 (126)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 33344444434344444444444555554443333 445555444432 11 1222233334455555555555555
Q ss_pred HHh
Q 038748 194 RVV 196 (482)
Q Consensus 194 ~~~ 196 (482)
+.+
T Consensus 98 ~~l 100 (126)
T 1nzn_A 98 RGL 100 (126)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 240
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=92.89 E-value=2.3 Score=32.14 Aligned_cols=36 Identities=14% Similarity=0.135 Sum_probs=23.6
Q ss_pred CCCHhhHHHHHHHHhhCCCc------HHHHHHHHHHHhcCCC
Q 038748 98 KHSPYAWNLVVDLLGKNCLF------DAMWDAIKSMKKENVL 133 (482)
Q Consensus 98 ~~~~~~~~~li~~~~~~~~~------~~a~~~~~~~~~~~~~ 133 (482)
+-|.++|-..+..+-+.|++ ++..++|++....-+|
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp 51 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPP 51 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCG
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCc
Confidence 34566677777776666777 6667777766665444
No 241
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=92.73 E-value=0.36 Score=33.42 Aligned_cols=59 Identities=17% Similarity=0.267 Sum_probs=30.0
Q ss_pred hHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHH
Q 038748 153 DAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILL 211 (482)
Q Consensus 153 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 211 (482)
+..+-++.+....+.|++.+..+.+++|-+.+++..|..+|+-++........+|..++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~l 86 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 86 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHH
Confidence 44444455555555555555555555555555555555555555443333333344433
No 242
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=92.57 E-value=5.9 Score=41.97 Aligned_cols=129 Identities=5% Similarity=0.034 Sum_probs=60.8
Q ss_pred HHHHHHHHHccCCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHH
Q 038748 244 YDSYLITLLKGCDGIYETVNSLKRMMERGCNPG----MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMM 319 (482)
Q Consensus 244 ~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 319 (482)
|..++..+-+. +.++.+.++-....+....-+ ...|..+++.+...|++++|...+-.+. .... -......|
T Consensus 902 Y~hv~~LFe~~-~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~p-d~~~--r~~cLr~L 977 (1139)
T 4fhn_B 902 YLHLSKKLFEE-SAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLS-TTPL--KKSCLLDF 977 (1139)
T ss_dssp HHHHHHHHHHT-SCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHH-HSSS--CHHHHHHH
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCC-CHHH--HHHHHHHH
Confidence 45555555555 666666666555544321111 1135556666666666666666665553 2221 23334444
Q ss_pred HHHHHhc------------CCHHHHHHHHHHHHHCCCCC-CHhhHHHHHH-HHHhcCCHHHHH-HHHHHHHh
Q 038748 320 ISLYCYS------------NETGAAMKLLDEMVYNGAFP-DIQTYNILFE-FLVKGRKLWEAS-GLFNEMVK 376 (482)
Q Consensus 320 i~~~~~~------------~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~-~~~~~g~~~~a~-~~~~~~~~ 376 (482)
+..+|.. |..+++.+++....+....+ +...|..++. -+...|++.+|- -+|+.+.+
T Consensus 978 V~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~R 1049 (1139)
T 4fhn_B 978 VNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSR 1049 (1139)
T ss_dssp HHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHH
Confidence 4444433 34556666654332211001 1112434443 345566666544 45555543
No 243
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=92.20 E-value=11 Score=38.31 Aligned_cols=258 Identities=7% Similarity=-0.080 Sum_probs=119.3
Q ss_pred HHHhhCCCcHHHHHHHHHHHhcC-CCCHH--HHHHHHHHHHhhCChhhHHHHHHHHHhcCC-------CCCHhhHHHHHH
Q 038748 109 DLLGKNCLFDAMWDAIKSMKKEN-VLSLA--TFASVFSSYVVADRVKDAITTFDVMEQYGC-------KHDVFALNSLLS 178 (482)
Q Consensus 109 ~~~~~~~~~~~a~~~~~~~~~~~-~~~~~--~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~ll~ 178 (482)
-+....|+.++++.+++.....+ ..+.. .=..+.-+.+..|..+++..++.......- .+....-.++--
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 34556677777777776655422 12222 222333344555555566666665554311 011122222323
Q ss_pred HHHh--cCChHhHHHHHHH-hhCCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHc
Q 038748 179 AICR--DGKTIDAWQFLRV-VDGRIKPDNDTYA--ILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLK 253 (482)
Q Consensus 179 ~~~~--~g~~~~a~~~~~~-~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~ 253 (482)
+++- .++- ++.+.+.. +... .+...... .|...++-.|+-+....++..+... ..+++.-...+..+++.
T Consensus 462 Gla~~GS~~e-ev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~---~~e~vrR~aalgLGll~ 536 (963)
T 4ady_A 462 GLAAMGSANI-EVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQET---QHGNITRGLAVGLALIN 536 (963)
T ss_dssp HHHSTTCCCH-HHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHT
T ss_pred HHHhcCCCCH-HHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhcc---CcHHHHHHHHHHHHhhh
Confidence 3333 3333 33333333 3321 11111122 2333344556666666666665532 12222223333334445
Q ss_pred cCCChHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHH
Q 038748 254 GCDGIYETVNSLKRMMERGCNPGMTFFK--LAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGA 331 (482)
Q Consensus 254 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~--~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 331 (482)
. |+.+.+..+++.+.... .|....-. .+.-+|+..|+.....+++..+... ...++.....+.-++...|+.+.
T Consensus 537 ~-g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~ 612 (963)
T 4ady_A 537 Y-GRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTT 612 (963)
T ss_dssp T-TCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSS
T ss_pred C-CChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHH
Confidence 5 77777777777766532 22221111 2234556677777777677776422 12223222222234444566666
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCH-HHHHHHHHHHHh
Q 038748 332 AMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKL-WEASGLFNEMVK 376 (482)
Q Consensus 332 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~ 376 (482)
+.++++.+.+.+ .|....-..+.-+....|.. .++..++..+..
T Consensus 613 v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 613 VPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp HHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 667766555543 34444334444444444443 466667777754
No 244
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=91.90 E-value=1.5 Score=30.43 Aligned_cols=72 Identities=15% Similarity=0.275 Sum_probs=50.1
Q ss_pred HHHHHccCC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHH
Q 038748 248 LITLLKGCD-GIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMIS 321 (482)
Q Consensus 248 ~~~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 321 (482)
...++.... +.-++.+-++.+....+.|++....+.+.+|.+.+++..|.++|+.+..+. .....+|..++.
T Consensus 15 y~~~F~~~~iD~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~--~~~~~iY~~~lq 87 (109)
T 1v54_E 15 WVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHH
T ss_pred HHHHcCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh--cCchhhHHHHHH
Confidence 334444323 556677777777777888888888888999999999999999888884333 333445665553
No 245
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=91.54 E-value=13 Score=37.79 Aligned_cols=20 Identities=25% Similarity=0.300 Sum_probs=9.2
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 038748 322 LYCYSNETGAAMKLLDEMVY 341 (482)
Q Consensus 322 ~~~~~~~~~~a~~~~~~m~~ 341 (482)
+|+..|+.....++++.+.+
T Consensus 569 AyaGTGn~~aIq~LL~~~~~ 588 (963)
T 4ady_A 569 AYAGTGNNSAVKRLLHVAVS 588 (963)
T ss_dssp HTTTSCCHHHHHHHHHHHHH
T ss_pred HhcCCCCHHHHHHHHHHhcc
Confidence 34444454444445554444
No 246
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=91.17 E-value=4.3 Score=43.02 Aligned_cols=147 Identities=12% Similarity=0.016 Sum_probs=97.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCc-----------------
Q 038748 318 MMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENV----------------- 380 (482)
Q Consensus 318 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~----------------- 380 (482)
.++..+...+..+.+.++..... -+...--.+..++...|++++|.++|++.... +.
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~-----~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~-~~~~~~l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLN-----SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLV-LYSHTSQFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCS-CTTCCCSCSSHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcc-----CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhh-hcccchhhhhhcccccccc
Confidence 34555566666666655443322 23333344556677788888888888765221 10
Q ss_pred ------cChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 038748 381 ------LNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLS----ETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQ 450 (482)
Q Consensus 381 ------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 450 (482)
.-..-|.-++..+.+.+.++.+.++-+..++..-.-+. ..|..+++++...|++++|...+-.+.....
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~- 969 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL- 969 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS-
T ss_pred cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH-
Confidence 01124667888888899999999888777754221121 2678889999999999999999988876654
Q ss_pred CCHHHHHHHHHHHHHhccHHHH
Q 038748 451 VTPFALSKLKQILIKARKEAVY 472 (482)
Q Consensus 451 ~~~~~~~~l~~~~~~~g~~~~a 472 (482)
-...+..|+..+++.|..+.-
T Consensus 970 -r~~cLr~LV~~lce~~~~~~L 990 (1139)
T 4fhn_B 970 -KKSCLLDFVNQLTKQGKINQL 990 (1139)
T ss_dssp -CHHHHHHHHHHHHHHCCHHHH
T ss_pred -HHHHHHHHHHHHHhCCChhhh
Confidence 466788888888888776544
No 247
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=90.88 E-value=0.97 Score=44.77 Aligned_cols=129 Identities=13% Similarity=0.098 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHhhCC-hhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCC-hHhHHHHHHH-hhC------CCC-CCH-
Q 038748 136 ATFASVFSSYVVADR-VKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGK-TIDAWQFLRV-VDG------RIK-PDN- 204 (482)
Q Consensus 136 ~~~~~li~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~-~~~a~~~~~~-~~~------~~~-~~~- 204 (482)
.....++..+...++ ++.|..+|+++.+.....+......++..+...++ --+|.+++.+ ++. ... .+.
T Consensus 249 ~L~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~ 328 (754)
T 4gns_B 249 YLMYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDAD 328 (754)
T ss_dssp HHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHH
T ss_pred HHHHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccc
Confidence 344556666666666 58899999999886422222222333333333322 2224444433 321 111 121
Q ss_pred ---------HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHH
Q 038748 205 ---------DTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRM 268 (482)
Q Consensus 205 ---------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m 268 (482)
.....-...+...|+++.|+.+-++.. .+.|++..+|..|..+|... |+++.|+-.++.+
T Consensus 329 ~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV---~~aPseF~tW~~La~vYi~l-~d~e~ALLtLNSc 397 (754)
T 4gns_B 329 SARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTST---ELALDSFESWYNLARCHIKK-EEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCSSCHHHHHHHHHHHHHT-TCHHHHHHHHHHS
T ss_pred cccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHH---hcCchhhHHHHHHHHHHHHh-ccHHHHHHHHhcC
Confidence 122233455677899999999999986 55898999999999999999 9999999999876
No 248
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=90.31 E-value=2.2 Score=38.77 Aligned_cols=68 Identities=12% Similarity=0.041 Sum_probs=41.5
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH-----HcCCCCCHHHH
Q 038748 388 AAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMA-----EKGIQVTPFAL 456 (482)
Q Consensus 388 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~~~~~~~~~~ 456 (482)
.++.++...|+++++...+..+.... +.+...|..+|.+|.+.|+..+|++.|+++. +.|+.|++.+-
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 45555666666766666666665543 2344566666677777777777766666553 34666666543
No 249
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=89.93 E-value=0.89 Score=33.40 Aligned_cols=57 Identities=18% Similarity=0.244 Sum_probs=28.2
Q ss_pred HHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHH
Q 038748 154 AITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAIL 210 (482)
Q Consensus 154 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 210 (482)
..+-++.+....+.|++....+.+++|-+.+|+..|..+|+-++.+..+...+|..+
T Consensus 72 lrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~ 128 (152)
T 2y69_E 72 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYV 128 (152)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHH
Confidence 344444444445555555555555555555555555555555544333333334443
No 250
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=88.72 E-value=3.3 Score=30.48 Aligned_cols=62 Identities=15% Similarity=0.266 Sum_probs=45.0
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHH
Q 038748 257 GIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMI 320 (482)
Q Consensus 257 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li 320 (482)
+.-+..+-++.+....+.|+.......+.+|.+.+++..|.++|+.+..+ +.+...+|..++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K--~~~~~~iY~y~l 129 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVI 129 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCchhhHHHHH
Confidence 45566666777777778888888888888888888888888888887433 333444566555
No 251
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=88.13 E-value=6.3 Score=29.05 Aligned_cols=71 Identities=14% Similarity=0.081 Sum_probs=49.8
Q ss_pred CCccChhhHHHHHHHHhcCCC---hHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 038748 378 ENVLNHENCRAAVRVYMDSDD---PYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448 (482)
Q Consensus 378 ~~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 448 (482)
+-.|+..+--.+..++.+..+ ...++.+++++.+.+..-....+-.|.-|+.+.|++++|.++.+.+.+..
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~e 108 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 108 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 445566665556666666654 45688888888876521123566677788999999999999999888654
No 252
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=87.88 E-value=4.1 Score=30.06 Aligned_cols=67 Identities=12% Similarity=-0.002 Sum_probs=35.7
Q ss_pred CCCHhhHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHH
Q 038748 345 FPDIQTYNILFEFLVKGRK---LWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIE 411 (482)
Q Consensus 345 ~p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 411 (482)
.|+..+--....++.+..+ ..++..+++++.+.+..-.....-.+.-++.+.|++++|.+..+.+.+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3444444344445555443 335666666666544222233344455566666777777776666665
No 253
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=87.61 E-value=8.3 Score=32.49 Aligned_cols=114 Identities=8% Similarity=-0.068 Sum_probs=78.2
Q ss_pred HHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHh----hHHHHHHHHHhc
Q 038748 108 VDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVF----ALNSLLSAICRD 183 (482)
Q Consensus 108 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~ll~~~~~~ 183 (482)
+..+.+.|++++|++....-.+..+.|...-..+++.+|-.|+++.|.+-++...+.. |+.. .|..+|.+
T Consensus 4 ~~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~--p~~~~~a~~yr~lI~a---- 77 (273)
T 1zbp_A 4 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLF--PEYLPGASQLRHLVKA---- 77 (273)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHH----
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--chhhHHHHHHHHHHHH----
Confidence 3456788999999999999999999999999999999999999999999999888753 4332 33333332
Q ss_pred CChHhHHHHHHHhhC-C-----CCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHhHHh
Q 038748 184 GKTIDAWQFLRVVDG-R-----IKPDNDTYAILLEGWE--KERDVANAKKTFGEMVIE 233 (482)
Q Consensus 184 g~~~~a~~~~~~~~~-~-----~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~ 233 (482)
+..-..+-. + +.....-...++.+.. ..|+.++|.++-.+....
T Consensus 78 ------E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 78 ------AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp ------HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 222222221 1 1222333444555444 468999999888887653
No 254
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=85.34 E-value=9.8 Score=28.46 Aligned_cols=66 Identities=12% Similarity=0.009 Sum_probs=32.4
Q ss_pred CCHhhHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHH
Q 038748 346 PDIQTYNILFEFLVKGRK---LWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIE 411 (482)
Q Consensus 346 p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 411 (482)
|+..+--....++.+..+ ..++..+++++.+.+..-.....-.+.-++.+.|++++|.++.+.+.+
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 444443334444555443 334555666555533221222233444556666666666666666665
No 255
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=85.17 E-value=29 Score=33.68 Aligned_cols=271 Identities=11% Similarity=0.083 Sum_probs=136.8
Q ss_pred ccHHHHhhhcCCCCCHHHH-HHHHH--hhcCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHH
Q 038748 52 PTVEDVLDKTLIRVSQETV-EQVLK--FSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMK 128 (482)
Q Consensus 52 ~~~~~~l~~~~~~~~~~~~-~~ll~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 128 (482)
.++...+.+..-.|-...+ ...+. ...+++...+.++. ..+.+...-+....+....|+..+|......+-
T Consensus 56 ~ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~------~~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW 129 (618)
T 1qsa_A 56 VTVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSP------EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELW 129 (618)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCC------SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhcc------CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence 3466666665544443333 22222 12455655555444 224466666777788888888877877777777
Q ss_pred hcCCCCHHHHHHHHHHHHhhCChhhH--HHHHHHHHhcC-----------CCCCHhh-HHHHHHHHHhcCChHhHHHHHH
Q 038748 129 KENVLSLATFASVFSSYVVADRVKDA--ITTFDVMEQYG-----------CKHDVFA-LNSLLSAICRDGKTIDAWQFLR 194 (482)
Q Consensus 129 ~~~~~~~~~~~~li~~~~~~~~~~~a--~~~~~~~~~~~-----------~~~~~~~-~~~ll~~~~~~g~~~~a~~~~~ 194 (482)
..+......+..++..+.+.|.+... ..=++.+...| +.++... ...++..+ .+...+.....
T Consensus 130 ~~~~~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~---~~p~~~~~~~~ 206 (618)
T 1qsa_A 130 LTGKSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLA---NNPNTVLTFAR 206 (618)
T ss_dssp SCSSCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHH---HCGGGHHHHHH
T ss_pred hCCCCCcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHH---hChHhHHHHHh
Confidence 66655555677777777766654332 22222222222 1111111 11111111 11222222111
Q ss_pred HhhCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCCh-hhHHHHHHHHHccCCChHHHHHHHHHHHH
Q 038748 195 VVDGRIKPDND---TYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNV-PAYDSYLITLLKGCDGIYETVNSLKRMME 270 (482)
Q Consensus 195 ~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~-~~~~~l~~~~~~~~~~~~~a~~~~~~m~~ 270 (482)
. ..++.. .+...+.-+.+ .+.+.|...+........+.+... .....+...+... +...++...+.....
T Consensus 207 ~----~~~~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~-~~~~~~~~~~~~~~~ 280 (618)
T 1qsa_A 207 T----TGATDFTRQMAAVAFASVAR-QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGN-DVTDEQAKWRDDAIM 280 (618)
T ss_dssp H----SCCCHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCST-TCCHHHHHHHHHHHH
T ss_pred c----cCCChhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHc-CCChHHHHHHHhccc
Confidence 1 122222 22222333333 377888888888765433332111 1122222222233 435566666666544
Q ss_pred cCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038748 271 RGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVY 341 (482)
Q Consensus 271 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 341 (482)
.. .+.....-.+....+.|+++.|...|..|. ... ........-+..++...|+.++|..+|..+.+
T Consensus 281 ~~--~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~-~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 281 RS--QSTSLIERRVRMALGTGDRRGLNTWLARLP-MEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp TC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-TTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cC--CChHHHHHHHHHHHHCCCHHHHHHHHHHcc-ccc-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 33 333333344444556789999999998884 211 12344445566677788898888888887654
No 256
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=84.53 E-value=8.2 Score=30.87 Aligned_cols=53 Identities=13% Similarity=0.053 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHhCCCcc-ChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCC
Q 038748 364 LWEASGLFNEMVKNENVL-NHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSD 416 (482)
Q Consensus 364 ~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 416 (482)
...+..+|..|...|+.- -+..|......+...|++.+|.++|+.-++.+-.|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 445555555554443322 22334444444445555555555555555444433
No 257
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=83.34 E-value=12 Score=27.95 Aligned_cols=69 Identities=14% Similarity=0.091 Sum_probs=50.3
Q ss_pred ccChhhHHHHHHHHhcCCC---hHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 038748 380 VLNHENCRAAVRVYMDSDD---PYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448 (482)
Q Consensus 380 ~~~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 448 (482)
.|+..+--.+..++.+..+ ..+++.+++.+...+..-.....-.|.-++.+.|++++|.++.+.+.+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e 107 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 107 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 5666666666777777665 45688888888875422233455667788999999999999999998765
No 258
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=82.58 E-value=28 Score=31.50 Aligned_cols=28 Identities=11% Similarity=0.094 Sum_probs=18.2
Q ss_pred hhHHHHHHHHHhcCChHhHHHHHHHhhC
Q 038748 171 FALNSLLSAICRDGKTIDAWQFLRVVDG 198 (482)
Q Consensus 171 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 198 (482)
.....|...|.+.|+.++..+++.....
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 47 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRP 47 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455566777777777777777666544
No 259
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=82.56 E-value=9.8 Score=28.89 Aligned_cols=49 Identities=8% Similarity=0.058 Sum_probs=22.8
Q ss_pred HHHHHHHHHhcCC--CCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCC
Q 038748 120 MWDAIKSMKKENV--LSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKH 168 (482)
Q Consensus 120 a~~~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 168 (482)
+.++|..|..+++ .-+..|......+-..|++++|.++|+.-++.+-+|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4445555544443 233444444444444455555555555444443333
No 260
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=82.07 E-value=5.4 Score=30.77 Aligned_cols=118 Identities=7% Similarity=-0.052 Sum_probs=60.0
Q ss_pred HHHHHHHHHhcCChHhHHHHHHHhhC--CCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhh
Q 038748 173 LNSLLSAICRDGKTIDAWQFLRVVDG--RIKPD-------NDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPA 243 (482)
Q Consensus 173 ~~~ll~~~~~~g~~~~a~~~~~~~~~--~~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~ 243 (482)
+-.-+..+...|.++.|+-+.+.+.. +..|+ ..++..+.+++...|++..|...|++........+.+..+
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~ 102 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV 102 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 33445566666777777666655322 12222 2355667777888888888888888765432222222111
Q ss_pred HHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 038748 244 YDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMV 304 (482)
Q Consensus 244 ~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 304 (482)
...+ . .. ..... ......+...--.+..+|.+.|++++|..+++.+.
T Consensus 103 ~~~~-~--~~--ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 103 RPST-G--NS--ASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp ----------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred cccc-c--cc--CCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 1111 0 00 00000 00112233444446777788888888888888764
No 261
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=81.73 E-value=26 Score=30.69 Aligned_cols=163 Identities=15% Similarity=0.077 Sum_probs=92.1
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHH----HHHHHhcCCCCCHhhHHHHHHHHH
Q 038748 106 LVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITT----FDVMEQYGCKHDVFALNSLLSAIC 181 (482)
Q Consensus 106 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~----~~~~~~~~~~~~~~~~~~ll~~~~ 181 (482)
++..-|.+.+++++|++++..- ...+.+.|+...|.++ ++.+.+.++++|......++..+.
T Consensus 40 Ti~~Ry~~~k~y~eAidLL~~G--------------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 40 LVAARYSKQGNWAAAVDILASV--------------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHhhcCHHHHHHHHHHH--------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4445577788888888876542 2234444555444443 355555677777777777777766
Q ss_pred hcCChH--------hHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHc
Q 038748 182 RDGKTI--------DAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLK 253 (482)
Q Consensus 182 ~~g~~~--------~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~ 253 (482)
....-+ +|+++-........-|......+...|.+.+++.+|+..|- . |-.+ +...+..++..+..
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l---g~~~-s~~~~a~mL~ew~~ 179 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV--L---GTKE-SPEVLARMEYEWYK 179 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT--T---SCTT-HHHHHHHHHHHHHH
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--h---cCCc-hHHHHHHHHHHHHH
Confidence 554321 12222222112245577888888888999999888887762 1 3333 34566555555555
Q ss_pred cCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 038748 254 GCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMV 304 (482)
Q Consensus 254 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 304 (482)
. +...++ +... ...+--|.-.+++..|..+++...
T Consensus 180 ~-~~~~e~--------------dlfi-aRaVL~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 180 Q-DESHTA--------------PLYC-ARAVLPYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp T-SCGGGH--------------HHHH-HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred h-cCCccH--------------HHHH-HHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4 322111 1112 222334455677887777766654
No 262
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=81.46 E-value=8.6 Score=29.64 Aligned_cols=60 Identities=7% Similarity=-0.015 Sum_probs=34.2
Q ss_pred HHHHHHHHHccCCChHHHHHHHHHHHHcC-CCCC-------HHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 038748 244 YDSYLITLLKGCDGIYETVNSLKRMMERG-CNPG-------MTFFKLAFEECLTGQNLRGAEFIWGAMV 304 (482)
Q Consensus 244 ~~~l~~~~~~~~~~~~~a~~~~~~m~~~~-~~~~-------~~~~~~li~~~~~~g~~~~a~~~~~~~~ 304 (482)
+..-+..++.. +.++.|+-+.+.+.... ..|+ ..++..+.+++...|++..|...|++.+
T Consensus 23 l~dqik~L~d~-~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 23 VIDHVRDMAAA-GLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-hhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 34445555566 66666666665544321 1122 1244555667777777777777777754
No 263
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.01 E-value=26 Score=32.25 Aligned_cols=56 Identities=13% Similarity=-0.077 Sum_probs=24.1
Q ss_pred HHHHHHHhcCChHhHHHHHHHhhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 038748 175 SLLSAICRDGKTIDAWQFLRVVDG---RIKPDNDTYAILLEGWEKERDVANAKKTFGEM 230 (482)
Q Consensus 175 ~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 230 (482)
.+...|.+.|+++.|.+.|.++.. +...-...+-.+++.+...+++..+...+.+.
T Consensus 136 ~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 136 NLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp HHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 344444444444444444444322 12222334444444555555555555544444
No 264
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=80.39 E-value=12 Score=25.88 Aligned_cols=13 Identities=8% Similarity=-0.059 Sum_probs=5.5
Q ss_pred HhhCChhhHHHHH
Q 038748 146 VVADRVKDAITTF 158 (482)
Q Consensus 146 ~~~~~~~~a~~~~ 158 (482)
...|++++|..+.
T Consensus 51 mNrG~Yq~Al~l~ 63 (116)
T 2p58_C 51 MNRGDYASALQQG 63 (116)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HcchhHHHHHHhc
Confidence 3344444444433
No 265
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer, alternative splicing, apoptosis, cytoplasm, endoplasmic reticulum, golgi apparatus; NMR {Mus musculus}
Probab=80.26 E-value=20 Score=29.98 Aligned_cols=27 Identities=22% Similarity=0.358 Sum_probs=14.5
Q ss_pred ChhhHHHHHHHHHccCCChHHHHHHHHH
Q 038748 240 NVPAYDSYLITLLKGCDGIYETVNSLKR 267 (482)
Q Consensus 240 ~~~~~~~l~~~~~~~~~~~~~a~~~~~~ 267 (482)
...++..++..+... ..+-+++..|+.
T Consensus 228 G~Is~~Ef~~~~~~~-~~l~~~l~~~d~ 254 (256)
T 2jul_A 228 GVVTIDEFLETCQKD-ENIMNSMQLFEN 254 (256)
T ss_dssp CSBCHHHHHHHHHHC-SSHHHHHHHHHH
T ss_pred CcEeHHHHHHHHHhC-HHHHHHHHhhcc
Confidence 334555555555555 555555555554
No 266
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=79.07 E-value=17 Score=27.54 Aligned_cols=54 Identities=11% Similarity=0.018 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH
Q 038748 400 YVAIKFWKYMIENHCSDLS-ETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTP 453 (482)
Q Consensus 400 ~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 453 (482)
+++.++|..|..+|+.-.. ..|......+...|++++|.++|+.-++.+-+|-.
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 136 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPRE 136 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 3478888888887775544 45667777777888888888888888888777754
No 267
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=77.85 E-value=11 Score=25.94 Aligned_cols=10 Identities=20% Similarity=0.378 Sum_probs=4.0
Q ss_pred hhCChhhHHH
Q 038748 147 VADRVKDAIT 156 (482)
Q Consensus 147 ~~~~~~~a~~ 156 (482)
..|++++|..
T Consensus 51 NrG~Yq~Al~ 60 (115)
T 2uwj_G 51 NQGRYQEALA 60 (115)
T ss_dssp HTTCHHHHHG
T ss_pred cchhHHHHHH
Confidence 3344444433
No 268
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=76.80 E-value=58 Score=31.79 Aligned_cols=80 Identities=10% Similarity=0.065 Sum_probs=39.0
Q ss_pred HHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHh-
Q 038748 247 YLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCY- 325 (482)
Q Consensus 247 l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~- 325 (482)
....++-. |+++.|++++-.. ...+...+...+.. .|-+.....++..- . + .| ..-+..||..|.+
T Consensus 300 Yf~vLlLt-gqFE~AI~~L~~~----~~vdAVH~AIaL~~---~gLL~~~~~lls~~--~-~-~~-~lN~arLI~~Yt~~ 366 (661)
T 2qx5_A 300 YLQTLLLS-GLYGLAIDYTYTF----SEMDAVHLAIGLAS---LKLFKIDSSTRLTK--K-P-KR-DIRFANILANYTKS 366 (661)
T ss_dssp HHHHHHHT-TCHHHHHHHHHTT----CHHHHHHHHHHHHH---TTC----------------------CHHHHHHHHHTT
T ss_pred HHHHHHHH-hhHHHHHHHHHhc----CchhHHHHHHHHHH---cCCccCCCcccccC--C-C-cc-cccHHHHHHHHHHH
Confidence 34555556 8899998877643 23344444444433 33332211111110 0 1 11 2236677777765
Q ss_pred --cCCHHHHHHHHHHH
Q 038748 326 --SNETGAAMKLLDEM 339 (482)
Q Consensus 326 --~~~~~~a~~~~~~m 339 (482)
..+..+|+++|--+
T Consensus 367 F~~td~~~Al~Y~~li 382 (661)
T 2qx5_A 367 FRYSDPRVAVEYLVLI 382 (661)
T ss_dssp TTTTCHHHHHHHHHGG
T ss_pred hhcCCHHHHHHHHHHH
Confidence 46788888877666
No 269
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=75.76 E-value=7.6 Score=30.90 Aligned_cols=19 Identities=16% Similarity=-0.027 Sum_probs=10.6
Q ss_pred HHHHHhcCChHhHHHHHHH
Q 038748 177 LSAICRDGKTIDAWQFLRV 195 (482)
Q Consensus 177 l~~~~~~g~~~~a~~~~~~ 195 (482)
+...+..|+.+-+..+++.
T Consensus 76 l~~A~~~~~~~~~~~Ll~~ 94 (201)
T 3hra_A 76 YLYAGAQGRTEILAYMLKH 94 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHhc
Confidence 4444556666666555544
No 270
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=75.11 E-value=30 Score=29.00 Aligned_cols=20 Identities=10% Similarity=0.106 Sum_probs=8.7
Q ss_pred CCHHHHHHHHHHHHHCCCCC
Q 038748 327 NETGAAMKLLDEMVYNGAFP 346 (482)
Q Consensus 327 ~~~~~a~~~~~~m~~~g~~p 346 (482)
++.....++++.+.+.|..+
T Consensus 193 ~~~~~~~~i~~~Ll~~g~~~ 212 (285)
T 1wdy_A 193 SDDSDVEAITHLLLDHGADV 212 (285)
T ss_dssp SCTTTHHHHHHHHHHTTCCS
T ss_pred cccchHHHHHHHHHHcCCCC
Confidence 33333344444445554433
No 271
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=72.53 E-value=35 Score=27.27 Aligned_cols=52 Identities=12% Similarity=0.109 Sum_probs=30.6
Q ss_pred cHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCC
Q 038748 117 FDAMWDAIKSMKKENV--LSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKH 168 (482)
Q Consensus 117 ~~~a~~~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 168 (482)
...+.++|..|..+++ .-+..|......+...|++++|.++|+.-++.+-+|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4466666666666654 344555555666666666666666666666555444
No 272
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=72.01 E-value=49 Score=28.72 Aligned_cols=108 Identities=11% Similarity=0.040 Sum_probs=57.5
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHH----HHHHHHhcCCCCCHhhHHHHHHHHH
Q 038748 106 LVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAIT----TFDVMEQYGCKHDVFALNSLLSAIC 181 (482)
Q Consensus 106 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~----~~~~~~~~~~~~~~~~~~~ll~~~~ 181 (482)
++..-|.+.+++++|++++..- ...+.+.|+...|-+ +.+...+.+++++......++..+.
T Consensus 38 tl~~Ry~~~~~~~eAidlL~~g--------------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 38 TIANRYVRSKSYEHAIELISQG--------------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCHHHHHHHHHHH--------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4445566677777777765542 222344455444444 3444455566677666666666655
Q ss_pred hcCChH-hHHHHHHHh-------hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 038748 182 RDGKTI-DAWQFLRVV-------DGRIKPDNDTYAILLEGWEKERDVANAKKTF 227 (482)
Q Consensus 182 ~~g~~~-~a~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 227 (482)
....-+ .-.++.+.+ ......|+.....+...|.+.|++.+|+..|
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 432111 111222221 1112346667777777777777777776655
No 273
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=71.71 E-value=45 Score=28.13 Aligned_cols=55 Identities=15% Similarity=-0.021 Sum_probs=37.5
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 038748 357 FLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIEN 412 (482)
Q Consensus 357 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 412 (482)
...+.|+++++++....-++..+. |...-..++..+|-.|+++.|.+-++...+.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 345667777777777776666543 6666667777777777777777777776653
No 274
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=67.90 E-value=92 Score=30.21 Aligned_cols=356 Identities=7% Similarity=-0.023 Sum_probs=175.3
Q ss_pred CchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHH
Q 038748 80 HPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFD 159 (482)
Q Consensus 80 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 159 (482)
.+.+...++.. .++.+.....-+.-+..+++.+++...+.++.. .+.+...--....+....|+-.+|.....
T Consensus 54 ~~~ev~~Fl~~---~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~ 126 (618)
T 1qsa_A 54 PAVTVTNFVRA---NPTLPPARTLQSRFVNELARREDWRGLLAFSPE----KPGTTEAQCNYYYAKWNTGQSEEAWQGAK 126 (618)
T ss_dssp CHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS----CCSSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHH---CCCChhHHHHHHHHHHHHHhCCCHHHHHHhccC----CCCCHHHHHHHHHHHHHcCChhHHHHHHH
Confidence 44544444442 223333344556667778888887777664443 23455555556677777888777776666
Q ss_pred HHHhcCCCCCHhhHHHHHHHHHhcCChHhHH--HHHHH-hhCC-----------CCCCHHH-HHHHHHHHHhcCCHHHHH
Q 038748 160 VMEQYGCKHDVFALNSLLSAICRDGKTIDAW--QFLRV-VDGR-----------IKPDNDT-YAILLEGWEKERDVANAK 224 (482)
Q Consensus 160 ~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~--~~~~~-~~~~-----------~~~~~~~-~~~l~~~~~~~~~~~~a~ 224 (482)
.+=..|. .....+..++..+.+.|.+.... .=++. +..+ ++++... ...++..+.+ ...+.
T Consensus 127 ~lW~~~~-~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~---p~~~~ 202 (618)
T 1qsa_A 127 ELWLTGK-SQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN---PNTVL 202 (618)
T ss_dssp HHHSCSS-CCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC---GGGHH
T ss_pred HHHhCCC-CCcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhC---hHhHH
Confidence 6544442 34556777888887766554322 11111 1111 1111111 1111111111 11111
Q ss_pred HHHHHhHHhcCCCCCCh--hhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----HhcCChhHHHH
Q 038748 225 KTFGEMVIEVGWDPDNV--PAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEEC----LTGQNLRGAEF 298 (482)
Q Consensus 225 ~~~~~~~~~~~~~p~~~--~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~----~~~g~~~~a~~ 298 (482)
..... ..++.. ..+...+..+.+ .+.+.|...+....+... .+......+-... ...+...++..
T Consensus 203 ~~~~~------~~~~~~~~~~~~~~~~rlar--~d~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~ 273 (618)
T 1qsa_A 203 TFART------TGATDFTRQMAAVAFASVAR--QDAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAK 273 (618)
T ss_dssp HHHHH------SCCCHHHHHHHHHHHHHHHH--HCHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHH
T ss_pred HHHhc------cCCChhhHHHHHHHHHHHHh--cCHHHHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHH
Confidence 11110 111111 111122233333 467888888887765432 2332222222222 23343456666
Q ss_pred HHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 038748 299 IWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNE 378 (482)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 378 (482)
.+.... .. ..+.....-.+....+.|+++.|...|..|...... ...-..-+..++...|+.++|..+|+.+...
T Consensus 274 ~~~~~~-~~--~~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~-~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~- 348 (618)
T 1qsa_A 274 WRDDAI-MR--SQSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKE-KDEWRYWQADLLLERGREAEAKEILHQLMQQ- 348 (618)
T ss_dssp HHHHHH-HT--CCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGG-SHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-
T ss_pred HHHhcc-cc--CCChHHHHHHHHHHHHCCCHHHHHHHHHHccccccc-cHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC-
Confidence 666653 22 234434444455555678999998888887653211 2333444666777888988998888888652
Q ss_pred CccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCC-hh-----hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 038748 379 NVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDL-SE-----TGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVT 452 (482)
Q Consensus 379 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~-----~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 452 (482)
. +|-.++. ..+.|..-.. . ...+.+. .. .-..-+..+...|....|...+..+.+. .+
T Consensus 349 ---~--~fYg~lA-a~~Lg~~~~~-~------~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~---~~ 412 (618)
T 1qsa_A 349 ---R--GFYPMVA-AQRIGEEYEL-K------IDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KS 412 (618)
T ss_dssp ---C--SHHHHHH-HHHTTCCCCC-C------CCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CC
T ss_pred ---C--ChHHHHH-HHHcCCCCCC-C------CCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc---CC
Confidence 1 2323221 1222221000 0 0001110 00 1112345567788888888888877653 23
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHH
Q 038748 453 PFALSKLKQILIKARKEAVYEELL 476 (482)
Q Consensus 453 ~~~~~~l~~~~~~~g~~~~a~~~~ 476 (482)
......+.......|.++.++...
T Consensus 413 ~~~~~~la~~a~~~~~~~~~v~~~ 436 (618)
T 1qsa_A 413 KTEQAQLARYAFNNQWWDLSVQAT 436 (618)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHH
Confidence 333444555555667666665444
No 275
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=66.67 E-value=70 Score=28.40 Aligned_cols=26 Identities=8% Similarity=0.229 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhH
Q 038748 206 TYAILLEGWEKERDVANAKKTFGEMV 231 (482)
Q Consensus 206 ~~~~l~~~~~~~~~~~~a~~~~~~~~ 231 (482)
....+|.-|...++.++|...++++.
T Consensus 56 ~~~~ii~EYf~~~d~~Ea~~~l~eL~ 81 (358)
T 3eiq_C 56 TLTPIIQEYFEHGDTNEVAEMLRDLN 81 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTT
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhC
Confidence 46677888888899999988888874
No 276
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=66.37 E-value=41 Score=27.38 Aligned_cols=54 Identities=6% Similarity=-0.039 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH
Q 038748 400 YVAIKFWKYMIENHCSDLS-ETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTP 453 (482)
Q Consensus 400 ~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 453 (482)
+.+..+|..|..+||.-.. ..|......+...|++.+|.++|+.-++.+-+|-.
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 185 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFL 185 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 4667788888877765544 45666667777788888888888888777777644
No 277
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=66.00 E-value=50 Score=27.28 Aligned_cols=88 Identities=13% Similarity=-0.013 Sum_probs=41.0
Q ss_pred HHHHHhhCChhhHHHHHHHHHhc--CCCC----CHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 038748 142 FSSYVVADRVKDAITTFDVMEQY--GCKH----DVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWE 215 (482)
Q Consensus 142 i~~~~~~~~~~~a~~~~~~~~~~--~~~~----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 215 (482)
++.+....++++|.+++++..+. +++. +.......+..-.....-.-+..+.+.+.. ..+.......+..+.
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~--~~~~~~~r~~v~~L~ 102 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS--SNEIVHLKSGTENMI 102 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT--CSSHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCHHHHHHHHHHHH
Confidence 44555556666666665554432 1111 111112222222222222233333444432 444555556666677
Q ss_pred hcCCHHHHHHHHHHhH
Q 038748 216 KERDVANAKKTFGEMV 231 (482)
Q Consensus 216 ~~~~~~~a~~~~~~~~ 231 (482)
+.|+-++|.++|-+..
T Consensus 103 rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 103 KLGLPEQALDLFLQNR 118 (235)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HCCChhHHHHHHHHHH
Confidence 7777777777765543
No 278
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=65.70 E-value=44 Score=25.72 Aligned_cols=56 Identities=4% Similarity=-0.121 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH
Q 038748 400 YVAIKFWKYMIENHCSDLS-ETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFA 455 (482)
Q Consensus 400 ~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 455 (482)
+.+.++|..|..+|+.-.. ..|......+-..|++.+|.++|+.-++.+-+|-...
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~L 133 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLERL 133 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH
Confidence 3466778888877765544 4566666777778888888888888888777776543
No 279
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=65.33 E-value=83 Score=28.79 Aligned_cols=27 Identities=0% Similarity=-0.175 Sum_probs=15.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 038748 420 TGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448 (482)
Q Consensus 420 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 448 (482)
+...|...+. =..+++.+.+.+|+..|
T Consensus 349 ~l~~mA~~l~--~s~~~~E~~L~~lI~~g 375 (429)
T 4b4t_R 349 SLKSMASAFG--VSVAFLDNDLGKFIPNK 375 (429)
T ss_dssp EHHHHHHHHT--SCHHHHHHHHHHHHHHT
T ss_pred eHHHHHHHhC--cCHHHHHHHHHHHHHcC
Confidence 3344444442 24567778888887554
No 280
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=60.77 E-value=39 Score=23.41 Aligned_cols=78 Identities=9% Similarity=-0.096 Sum_probs=41.2
Q ss_pred CHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 038748 363 KLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAK 442 (482)
Q Consensus 363 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 442 (482)
..++|..+-+.+...+. ....-.+-+..+...|++++|..+.+.+ ..||...|-.|- -.+.|..+++...+.
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALc--e~rlGl~s~le~rL~ 92 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGN----PWPALEPWFALC--EWHLGLGAALDRRLA 92 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTC----CCGGGHHHHHHH--HHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHH--HHhcccHHHHHHHHH
Confidence 45666666665555433 1222222233455667777666655433 346665555443 235666666666666
Q ss_pred HHHHcC
Q 038748 443 GMAEKG 448 (482)
Q Consensus 443 ~m~~~~ 448 (482)
++-.+|
T Consensus 93 ~la~sg 98 (115)
T 2uwj_G 93 GLGGSS 98 (115)
T ss_dssp HHHTCS
T ss_pred HHHhCC
Confidence 665555
No 281
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=59.79 E-value=41 Score=23.34 Aligned_cols=78 Identities=10% Similarity=-0.072 Sum_probs=42.1
Q ss_pred CHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 038748 363 KLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAK 442 (482)
Q Consensus 363 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 442 (482)
..++|..+-+.+...+. ....-.+-+..+...|++++|..+.+.+ ..||...|-.|-. .+.|..+++...+.
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL~ 93 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKL----AYPDLEPWLALCE--YRLGLGSALESRLN 93 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTS----CCGGGHHHHHHHH--HHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 45666666666655443 2222222234455667777776665443 3566666655432 35566666666665
Q ss_pred HHHHcC
Q 038748 443 GMAEKG 448 (482)
Q Consensus 443 ~m~~~~ 448 (482)
++-.+|
T Consensus 94 ~la~sg 99 (116)
T 2p58_C 94 RLARSQ 99 (116)
T ss_dssp HHTTCC
T ss_pred HHHhCC
Confidence 665554
No 282
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=59.26 E-value=1e+02 Score=27.81 Aligned_cols=220 Identities=10% Similarity=-0.039 Sum_probs=95.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCC---hhhHHHHHHHHHccCCChHHHHHHHHHHHHc--CCCCCHHHHHHH
Q 038748 209 ILLEGWEKERDVANAKKTFGEMVIEVGWDPDN---VPAYDSYLITLLKGCDGIYETVNSLKRMMER--GCNPGMTFFKLA 283 (482)
Q Consensus 209 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~---~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~l 283 (482)
-++..|...|++.+|..++..+.+...-..+. ...+-.-+..+... +++.++...+...... .+.+++.....+
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~-~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i 182 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHAL-SNLPKARAALTSARTTANAIYCPPKVQGAL 182 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHhhhccCCCCHHHHHHH
Confidence 45555666666666666666555432111111 12233334445555 6666666666554432 121222221111
Q ss_pred ----HHHHH-hcCChhHHHHHHHHhhcccCCC--C---CHHHHHHHHHHHHhcCCHHHHHHHHH-HHHHCCCCCCHhhHH
Q 038748 284 ----FEECL-TGQNLRGAEFIWGAMVGRIGFR--P---DTHMYNMMISLYCYSNETGAAMKLLD-EMVYNGAFPDIQTYN 352 (482)
Q Consensus 284 ----i~~~~-~~g~~~~a~~~~~~~~~~~~~~--~---~~~~~~~li~~~~~~~~~~~a~~~~~-~m~~~g~~p~~~~~~ 352 (482)
...+. ..+++..|...|-+..+...-. | +...|..| .+... ++..+.-.++. .....-..|....+.
T Consensus 183 ~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL-~aLl~-~~r~el~~~l~~~~~~~~~~pei~~l~ 260 (394)
T 3txn_A 183 DLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLL-CKIML-GQSDDVNQLVSGKLAITYSGRDIDAMK 260 (394)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH-HHHHT-TCGGGHHHHHHSHHHHTTCSHHHHHHH
T ss_pred HHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHH-HHHHc-CCHHHHHHHhccccccccCCccHHHHH
Confidence 12234 5677777766665543222101 1 11223222 22222 22222222221 111111234555555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcC----CCC-ChhhHHHHHHH
Q 038748 353 ILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENH----CSD-LSETGNLLVAG 427 (482)
Q Consensus 353 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~----~~p-~~~~~~~li~~ 427 (482)
.++.++ ..+++.+...+++.... .+..|...... ...+++.+...+ +.| ...++..+...
T Consensus 261 ~L~~a~-~~~dl~~f~~iL~~~~~-~l~~D~~l~~h-------------~~~L~~~Ir~~~L~~i~~pYsrIsl~~iA~~ 325 (394)
T 3txn_A 261 SVAEAS-HKRSLADFQAALKEYKK-ELAEDVIVQAH-------------LGTLYDTMLEQNLCRIIEPYSRVQVAHVAES 325 (394)
T ss_dssp HHHHHH-HTTCHHHHHHHHHHSTT-TTTTSHHHHHH-------------HHHHHHHHHHHHHHHHHTTCSEEEHHHHHHH
T ss_pred HHHHHH-HhCCHHHHHHHHHHHHH-HHhcChHHHHH-------------HHHHHHHHHHHHHHHHhHhhceeeHHHHHHH
Confidence 555554 45677666666655432 23334332111 111222222111 122 33566666666
Q ss_pred HHhcCChhHHHHHHHHHHHcC
Q 038748 428 LCDMHMLPEAVKYAKGMAEKG 448 (482)
Q Consensus 428 ~~~~g~~~~A~~~~~~m~~~~ 448 (482)
+.- ..+++...+.+|+..|
T Consensus 326 l~l--s~~evE~~L~~lI~dg 344 (394)
T 3txn_A 326 IQL--PMPQVEKKLSQMILDK 344 (394)
T ss_dssp HTC--CHHHHHHHHHHHHHTT
T ss_pred HCc--CHHHHHHHHHHHHHCC
Confidence 543 6778888888887664
No 283
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=56.91 E-value=12 Score=31.20 Aligned_cols=17 Identities=12% Similarity=0.503 Sum_probs=10.3
Q ss_pred HHHHhccHHHHHHHHHH
Q 038748 462 ILIKARKEAVYEELLKK 478 (482)
Q Consensus 462 ~~~~~g~~~~a~~~~~~ 478 (482)
...+.|+.+.+..++++
T Consensus 231 ~A~~~g~~~~v~~Ll~~ 247 (260)
T 3jxi_A 231 MAAKTGKIGIFQHIIRR 247 (260)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHh
Confidence 34456776666666654
No 284
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=56.85 E-value=32 Score=25.19 Aligned_cols=25 Identities=4% Similarity=0.009 Sum_probs=15.6
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHH
Q 038748 104 WNLVVDLLGKNCLFDAMWDAIKSMK 128 (482)
Q Consensus 104 ~~~li~~~~~~~~~~~a~~~~~~~~ 128 (482)
.+.++.-|...|+.++|...++++.
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~ 34 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELE 34 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 3455666666666666666666654
No 285
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=56.80 E-value=98 Score=26.82 Aligned_cols=16 Identities=13% Similarity=-0.004 Sum_probs=7.4
Q ss_pred HHHhcCChHhHHHHHH
Q 038748 179 AICRDGKTIDAWQFLR 194 (482)
Q Consensus 179 ~~~~~g~~~~a~~~~~ 194 (482)
..+..|..+-+..+++
T Consensus 131 ~A~~~~~~~~~~~ll~ 146 (337)
T 4g8k_A 131 EAAVYGKVKALKFLYK 146 (337)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHHHcCcHHHHHHHHH
Confidence 3344555554444433
No 286
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=56.20 E-value=43 Score=24.54 Aligned_cols=64 Identities=13% Similarity=0.100 Sum_probs=41.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCC--hHHHHHHHHHHHHcCC
Q 038748 350 TYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDD--PYVAIKFWKYMIENHC 414 (482)
Q Consensus 350 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~ 414 (482)
....++.-|...|+.++|...++++...... ...+...+..++-+.++ .+...+++..+.+.|+
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~ 74 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 74 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCC
Confidence 4567788888899999999999988532111 22334445555555432 4567777777777665
No 287
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=56.18 E-value=81 Score=28.67 Aligned_cols=334 Identities=9% Similarity=0.033 Sum_probs=147.7
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHh--hHHHHHHHHHhc
Q 038748 106 LVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVF--ALNSLLSAICRD 183 (482)
Q Consensus 106 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~ 183 (482)
+.+...+..|+.+-+..+++.-..-+..+..-.+ .+...+..|+.+-+. .+.+.|..++.. .-.+.+...+..
T Consensus 49 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~g~~~~v~----~Ll~~ga~~~~~~~~g~t~L~~A~~~ 123 (437)
T 1n11_A 49 TPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQT-PLHCAARIGHTNMVK----LLLENNANPNLATTAGHTPLHIAARE 123 (437)
T ss_dssp CHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCC-HHHHHHHHTCHHHHH----HHHHHTCCTTCCCTTCCCHHHHHHHH
T ss_pred CHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCC-HHHHHHHCCCHHHHH----HHHhCCCCCCCCCCCCCcHHHHHHHc
Confidence 3455566677776665555432111112222222 344445667765443 344445444322 122345556677
Q ss_pred CChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCC--hhhHHHHHHHHHccCCChHHH
Q 038748 184 GKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDN--VPAYDSYLITLLKGCDGIYET 261 (482)
Q Consensus 184 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~--~~~~~~l~~~~~~~~~~~~~a 261 (482)
|+.+.+..+++.-......+..-+ +.+...+..|+.+-+..+++. |..++. ....+. +...+.. |+.+
T Consensus 124 g~~~~v~~Ll~~~~~~~~~~~~g~-t~L~~A~~~g~~~~v~~Ll~~-----g~~~~~~~~~g~t~-L~~A~~~-~~~~-- 193 (437)
T 1n11_A 124 GHVETVLALLEKEASQACMTKKGF-TPLHVAAKYGKVRVAELLLER-----DAHPNAAGKNGLTP-LHVAVHH-NNLD-- 193 (437)
T ss_dssp TCHHHHHHHHHTTCCSCCCCTTSC-CHHHHHHHTTCHHHHHHHHHT-----TCCTTCCCSSCCCH-HHHHHHT-TCHH--
T ss_pred CCHHHHHHHHhCCCCCcCCCCCCC-CHHHHHHHcCCHHHHHHHHhC-----CCCCCCCCCCCCCH-HHHHHHc-CCHH--
Confidence 888777766654222111122222 234445566776655444432 433321 111122 3333444 5543
Q ss_pred HHHHHHHHHcCCCCCHHH--HHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038748 262 VNSLKRMMERGCNPGMTF--FKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEM 339 (482)
Q Consensus 262 ~~~~~~m~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 339 (482)
+++.+.+.|..++... -.+.+...+..|+.+-+..+++.-. ... ..+..-.+.| ...+..|+.+- ++.+
T Consensus 194 --~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~-~~~-~~~~~g~t~L-~~A~~~g~~~~----v~~L 264 (437)
T 1n11_A 194 --IVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGG-SAN-AESVQGVTPL-HLAAQEGHAEM----VALL 264 (437)
T ss_dssp --HHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC-CTT-CCCTTCCCHH-HHHHHTTCHHH----HHHH
T ss_pred --HHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC-CCC-CCCCCCCCHH-HHHHHCCCHHH----HHHH
Confidence 4444555565544321 1233455566777766665554321 100 1111122222 23345566543 3444
Q ss_pred HHCCCCCCH---hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCh---hhHHHHHHHHhcCCChHHHHHHHHHHHHcC
Q 038748 340 VYNGAFPDI---QTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNH---ENCRAAVRVYMDSDDPYVAIKFWKYMIENH 413 (482)
Q Consensus 340 ~~~g~~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 413 (482)
.+.|..++. ...+.+. ..+..|+.+-+..+ .+.|..++. .-.+.| ...+..|+.+ +.+.+.+.|
T Consensus 265 l~~~~~~~~~~~~g~t~L~-~A~~~~~~~~~~~L----l~~g~~~~~~~~~g~t~L-~~A~~~g~~~----~v~~Ll~~g 334 (437)
T 1n11_A 265 LSKQANGNLGNKSGLTPLH-LVAQEGHVPVADVL----IKHGVMVDATTRMGYTPL-HVASHYGNIK----LVKFLLQHQ 334 (437)
T ss_dssp HTTTCCTTCCCTTCCCHHH-HHHHHTCHHHHHHH----HHHTCCTTCCCSSCCCHH-HHHHHSSCSH----HHHHHHHTT
T ss_pred HhcCCCCCCCCCCCCCHHH-HHHHcCCHHHHHHH----HhCCccCCCCCCCCCCHH-HHHHHcCcHH----HHHHHHhcC
Confidence 555544432 2223333 33456666544433 343433322 122233 3334556654 444555666
Q ss_pred CCCChh---hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHHhccHHHHHHHHHHH
Q 038748 414 CSDLSE---TGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFA--LSKLKQILIKARKEAVYEELLKKC 479 (482)
Q Consensus 414 ~~p~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~m 479 (482)
..++.. -++.|..+ +..|..+ +.+.+.+.|..|+... -.+-+....+.|. ..+.++++..
T Consensus 335 ad~n~~~~~g~t~L~~A-~~~g~~~----iv~~Ll~~ga~~~~~~~~g~t~l~~A~~~g~-~~~~~~l~~~ 399 (437)
T 1n11_A 335 ADVNAKTKLGYSPLHQA-AQQGHTD----IVTLLLKNGASPNEVSSDGTTPLAIAKRLGY-ISVTDVLKVV 399 (437)
T ss_dssp CCTTCCCTTSCCHHHHH-HHTTCHH----HHHHHHHTTCCSCCCCSSSCCHHHHHHHTTC-HHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHH-HHCChHH----HHHHHHHCcCCCCCCCCCCCCHHHHHHHcCc-HHHHHHHHhc
Confidence 655442 23344333 4456554 4444556676665321 1112223344554 3445555443
No 288
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=56.04 E-value=56 Score=24.09 Aligned_cols=35 Identities=17% Similarity=0.047 Sum_probs=16.2
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Q 038748 433 MLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKAR 467 (482)
Q Consensus 433 ~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 467 (482)
..-.|.++++.+.+.+...+..|...-++.+.+.|
T Consensus 33 ~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 33 RHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp CSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 34445555555554444444444444444444443
No 289
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=55.89 E-value=57 Score=24.38 Aligned_cols=42 Identities=12% Similarity=0.034 Sum_probs=20.5
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Q 038748 426 AGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKAR 467 (482)
Q Consensus 426 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 467 (482)
..+...+..-.|.++++.+.+.+...+..|...-++.+.+.|
T Consensus 29 ~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 29 EYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 333334444455555555555544445544444444554444
No 290
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=55.24 E-value=90 Score=25.92 Aligned_cols=44 Identities=2% Similarity=0.031 Sum_probs=21.7
Q ss_pred HhcCCHHHHHHHHHHHHhCCCccChhh--HHHHHHHHhcCCChHHH
Q 038748 359 VKGRKLWEASGLFNEMVKNENVLNHEN--CRAAVRVYMDSDDPYVA 402 (482)
Q Consensus 359 ~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~a 402 (482)
+..++.....++++.+.+.|..++... -.+.+...+..|+.+-+
T Consensus 190 ~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v 235 (285)
T 1wdy_A 190 LLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLV 235 (285)
T ss_dssp HHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHH
T ss_pred HHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHH
Confidence 344555555666667777766554321 11233334445555433
No 291
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=54.98 E-value=19 Score=22.58 Aligned_cols=45 Identities=16% Similarity=0.233 Sum_probs=26.0
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhh
Q 038748 104 WNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVA 148 (482)
Q Consensus 104 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~ 148 (482)
++.++..++...-.++++..+++..+.|..+..+|-.-.+.+++.
T Consensus 5 ~~Qll~l~Aed~AieDaiy~L~~aL~~g~I~l~~ylK~vR~LaRe 49 (65)
T 2f6m_A 5 LNQLYNLVAQDYALTDTIEALSRMLHRGTIPLDTFVKQGRELARQ 49 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 445555555555566666666666666666655555555555443
No 292
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=54.80 E-value=74 Score=24.84 Aligned_cols=126 Identities=10% Similarity=0.020 Sum_probs=62.7
Q ss_pred HhcCChhHHHHHHHHhhcccCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh---hHHHHHHHHHh-cC
Q 038748 288 LTGQNLRGAEFIWGAMVGRIGFRPD-THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQ---TYNILFEFLVK-GR 362 (482)
Q Consensus 288 ~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~---~~~~ll~~~~~-~g 362 (482)
++.|+++....++..-. . ..+ ..-++ .+...+..|+.+.-.++.+.+.+.|..++.. -.+.|..++.. ..
T Consensus 14 a~~g~~~~~~~l~~~~~---~-~~~~~~g~T-~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~ 88 (186)
T 3t8k_A 14 AMLGTYEDFLELFEKGY---E-DKESVLKSN-ILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGN 88 (186)
T ss_dssp HHHSCHHHHHHHHHHSS---S-CHHHHHTTT-HHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTT
T ss_pred HHcCCHHHHHHHHhcCc---c-cccccCCCC-HHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCc
Confidence 45577766555554321 0 111 11122 3334455566666666777777777665542 23333333322 23
Q ss_pred CHHHHHHHHHHHHhCCCccChhh---HHHHHHHHhcCCCh-HHHHHHHHHHHH-cCCCCCh
Q 038748 363 KLWEASGLFNEMVKNENVLNHEN---CRAAVRVYMDSDDP-YVAIKFWKYMIE-NHCSDLS 418 (482)
Q Consensus 363 ~~~~a~~~~~~~~~~~~~~~~~~---~~~li~~~~~~~~~-~~a~~~~~~m~~-~~~~p~~ 418 (482)
+.....++.+.+++.|..++... .++.+...+..+.. ..-..+++.+.+ .|..++.
T Consensus 89 ~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~ 149 (186)
T 3t8k_A 89 DITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLI 149 (186)
T ss_dssp CHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTC
T ss_pred chhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcc
Confidence 34455667777777776655432 11222222233322 344556677776 6665554
No 293
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=54.38 E-value=60 Score=24.44 Aligned_cols=43 Identities=12% Similarity=0.080 Sum_probs=21.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Q 038748 425 VAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKAR 467 (482)
Q Consensus 425 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 467 (482)
+..+...+..-.|.++++.+.+.+...+..|...-++.+.+.|
T Consensus 33 L~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 33 VSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 3334444445555666666555554445554444445555444
No 294
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=53.93 E-value=51 Score=25.27 Aligned_cols=71 Identities=13% Similarity=0.112 Sum_probs=38.4
Q ss_pred HHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCChh
Q 038748 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMER--GCNPGMTFFKLAFEECLTGQNLR 294 (482)
Q Consensus 221 ~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g~~~ 294 (482)
+.+.+-+.+..++.|+... ..-..++..+... ++.-.|.++++.+.+. +...+..|...-++.+...|-+.
T Consensus 14 ~~~~~~~~~~L~~~g~r~T--~qR~~IL~~L~~~-~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~ 86 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYT--KQREVLLKTLYHS-DTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVT 86 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCC--HHHHHHHHHHHSC-CSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhC-CCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 3444444444444465552 2344455555555 5666666677666665 54555555555566666655443
No 295
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=52.41 E-value=40 Score=25.92 Aligned_cols=68 Identities=10% Similarity=0.052 Sum_probs=35.6
Q ss_pred HHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHhhHHHHHHHHHhcCCH
Q 038748 296 AEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYN--GAFPDIQTYNILFEFLVKGRKL 364 (482)
Q Consensus 296 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~g~~ 364 (482)
+.+-+.+..++.|+..+.. -..++..+...+..-.|.++++.+.+. +...+..|..--+..+...|-+
T Consensus 16 ~~~~~~~~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 16 LLERFKKILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 3333333334555555443 234445555555556666666666655 4445555555555556555543
No 296
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=52.04 E-value=71 Score=23.82 Aligned_cols=60 Identities=13% Similarity=0.062 Sum_probs=32.5
Q ss_pred HHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCC
Q 038748 126 SMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGK 185 (482)
Q Consensus 126 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 185 (482)
.+.+.|.-.+..-..++..+...+..-.|.++++.+.+.+...+..|.---+..+...|-
T Consensus 12 ~l~~~g~r~T~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 12 TLKETGVRITPQRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHcCCCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 344555433344555555555555556666666666665544555554445555555554
No 297
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=51.68 E-value=74 Score=23.92 Aligned_cols=62 Identities=11% Similarity=0.054 Sum_probs=38.7
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCh
Q 038748 125 KSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKT 186 (482)
Q Consensus 125 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 186 (482)
+.+.+.|.-.+..-..++..+...+..-.|.++++.+.+.+...+..|.--.+..+...|-+
T Consensus 16 ~~l~~~g~r~T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 16 MSIKKNGLKNSKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHHCC--CHHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 34555666555556667777766666777777877777766555666655556666666644
No 298
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=51.25 E-value=1.5e+02 Score=27.29 Aligned_cols=55 Identities=15% Similarity=0.051 Sum_probs=38.2
Q ss_pred hcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCC-----hHHHHHHHHHHHHcCC
Q 038748 360 KGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDD-----PYVAIKFWKYMIENHC 414 (482)
Q Consensus 360 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-----~~~a~~~~~~m~~~~~ 414 (482)
+.++.+.|+.++.+|.+.|..|....-..++.+....|. ...|...++.....|.
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~g~ 326 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGP 326 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHSCH
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHhCC
Confidence 457899999999999999887776666666666666554 3345555666656564
No 299
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=51.17 E-value=26 Score=26.62 Aligned_cols=63 Identities=3% Similarity=-0.002 Sum_probs=30.1
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCC--hhhHHHHHHHHHhcCC
Q 038748 104 WNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADR--VKDAITTFDVMEQYGC 166 (482)
Q Consensus 104 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~~~a~~~~~~~~~~~~ 166 (482)
.+.+|.-|...|+.++|...++++.........+...+..++-+.++ .+.+..++..+...|+
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~ 76 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 76 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCC
Confidence 44566666666777777777766643221222233333333333211 2344555555554443
No 300
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=50.75 E-value=59 Score=26.34 Aligned_cols=17 Identities=6% Similarity=0.094 Sum_probs=7.4
Q ss_pred CChHHHHHHHHHHHHcC
Q 038748 256 DGIYETVNSLKRMMERG 272 (482)
Q Consensus 256 ~~~~~a~~~~~~m~~~~ 272 (482)
|+.+.+..+++.+.+.|
T Consensus 20 g~~~~v~~Ll~~~~~~~ 36 (241)
T 1k1a_A 20 GNLPAVHRLVNLFQQGG 36 (241)
T ss_dssp TCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHhcC
Confidence 44444444444443333
No 301
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=50.65 E-value=73 Score=25.65 Aligned_cols=17 Identities=6% Similarity=0.124 Sum_probs=7.8
Q ss_pred HHHHhcCChHhHHHHHH
Q 038748 178 SAICRDGKTIDAWQFLR 194 (482)
Q Consensus 178 ~~~~~~g~~~~a~~~~~ 194 (482)
...+..|+.+.+..+++
T Consensus 8 ~~A~~~g~~~~v~~Ll~ 24 (232)
T 2rfa_A 8 LLAAKENDVQALSKLLK 24 (232)
T ss_dssp HHHHHTTCHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHH
Confidence 33444555554444443
No 302
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=50.34 E-value=84 Score=24.15 Aligned_cols=52 Identities=12% Similarity=0.045 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhcCC--CCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCH
Q 038748 119 AMWDAIKSMKKENV--LSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDV 170 (482)
Q Consensus 119 ~a~~~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 170 (482)
.+.++|..|..+++ .-+..|..-...+-..|++.+|.++|+.-++.+-.|-.
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 36667777777765 34556666666777777777777777777776655543
No 303
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=50.29 E-value=64 Score=26.01 Aligned_cols=21 Identities=5% Similarity=-0.347 Sum_probs=11.3
Q ss_pred HhcCChhHHHHHHHHHHHcCC
Q 038748 429 CDMHMLPEAVKYAKGMAEKGI 449 (482)
Q Consensus 429 ~~~g~~~~A~~~~~~m~~~~~ 449 (482)
+..|+.+-+..+++.+.+.|.
T Consensus 162 ~~~~~~~~~~~i~~~Ll~~g~ 182 (232)
T 2rfa_A 162 ILQPNKTFACQMYNLLLSYDG 182 (232)
T ss_dssp HTCSCHHHHHHHHHHHHHTTC
T ss_pred HHcCChHHHHHHHHHHHhcCC
Confidence 445555555555555555553
No 304
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=49.80 E-value=63 Score=24.35 Aligned_cols=34 Identities=12% Similarity=0.048 Sum_probs=14.8
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Q 038748 434 LPEAVKYAKGMAEKGIQVTPFALSKLKQILIKAR 467 (482)
Q Consensus 434 ~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 467 (482)
.-.|.++++.+.+.+...+..|...-++.+.+.|
T Consensus 33 h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 33 HISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp SEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 3444445544444444444444333344444433
No 305
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=49.69 E-value=59 Score=25.42 Aligned_cols=39 Identities=10% Similarity=-0.048 Sum_probs=18.3
Q ss_pred HHHHHHHHHHcCCCCCHHHH--HHHHHHHHHhccHHHHHHH
Q 038748 437 AVKYAKGMAEKGIQVTPFAL--SKLKQILIKARKEAVYEEL 475 (482)
Q Consensus 437 A~~~~~~m~~~~~~~~~~~~--~~l~~~~~~~g~~~~a~~~ 475 (482)
-.++.+.+.+.|..++.... .+.+....+.|+.+-+.-+
T Consensus 157 ~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L 197 (201)
T 3hra_A 157 YQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKIL 197 (201)
T ss_dssp HHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHH
Confidence 35555666666655543211 1223334455665544443
No 306
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=49.66 E-value=53 Score=24.56 Aligned_cols=57 Identities=4% Similarity=0.018 Sum_probs=27.8
Q ss_pred HHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Q 038748 409 MIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKAR 467 (482)
Q Consensus 409 m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 467 (482)
+.+.|++++..= ..++..+...+ .-.|.++++.+.+.+...+..|...-++.+.+.|
T Consensus 10 L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 10 LRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp HHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred HHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 334455544321 22233333334 4556666666665555555555545555555554
No 307
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=49.62 E-value=32 Score=28.00 Aligned_cols=51 Identities=10% Similarity=0.104 Sum_probs=31.1
Q ss_pred hhHHHHHHHHHhcCCCCC-HhhHHHHHHHHHhcCChHhHHHHHHH-hhCCCCC
Q 038748 152 KDAITTFDVMEQYGCKHD-VFALNSLLSAICRDGKTIDAWQFLRV-VDGRIKP 202 (482)
Q Consensus 152 ~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~-~~~~~~~ 202 (482)
+....+|..|...|+-.. ...|......+-..|++.+|.++|+. +..+-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 466677777776655433 33456666666677777777777766 4444444
No 308
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=49.24 E-value=1.4e+02 Score=26.24 Aligned_cols=25 Identities=16% Similarity=0.140 Sum_probs=15.3
Q ss_pred ChhhHHHHHHHHhcCCChHHHHHHH
Q 038748 382 NHENCRAAVRVYMDSDDPYVAIKFW 406 (482)
Q Consensus 382 ~~~~~~~li~~~~~~~~~~~a~~~~ 406 (482)
|+.....+...|.+.+++.+|...|
T Consensus 135 dp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 135 DPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHH
Confidence 4455556666666666666666554
No 309
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=49.04 E-value=43 Score=28.46 Aligned_cols=14 Identities=7% Similarity=-0.047 Sum_probs=7.4
Q ss_pred HHHHHHhHHhcCCCC
Q 038748 224 KKTFGEMVIEVGWDP 238 (482)
Q Consensus 224 ~~~~~~~~~~~~~~p 238 (482)
.++++.+.+. |..+
T Consensus 44 ~~~v~~Ll~~-g~~~ 57 (285)
T 3kea_A 44 VRLVCTLLNA-GALK 57 (285)
T ss_dssp HHHHHHHHHT-TGGG
T ss_pred HHHHHHHHhC-CCCC
Confidence 5556666543 5444
No 310
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=48.73 E-value=1.5e+02 Score=26.72 Aligned_cols=300 Identities=10% Similarity=0.024 Sum_probs=134.0
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCH--hhHHHHHHHHHhcC
Q 038748 107 VVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDV--FALNSLLSAICRDG 184 (482)
Q Consensus 107 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~g 184 (482)
.+...+..|+.+-+.-+++.-...+..+..-.+ .+...+..|+.+.+..+++. +..++. ..-.+.+...+..|
T Consensus 83 ~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll~~----~~~~~~~~~~g~t~L~~A~~~g 157 (437)
T 1n11_A 83 PLHCAARIGHTNMVKLLLENNANPNLATTAGHT-PLHIAAREGHVETVLALLEK----EASQACMTKKGFTPLHVAAKYG 157 (437)
T ss_dssp HHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCC-HHHHHHHHTCHHHHHHHHHT----TCCSCCCCTTSCCHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHHhCCCCCCCCCCCCCc-HHHHHHHcCCHHHHHHHHhC----CCCCcCCCCCCCCHHHHHHHcC
Confidence 445556667776555554432111122222222 34445566877666655543 322221 11123456667788
Q ss_pred ChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCC--hhhHHHHHHHHHccCCChHHHH
Q 038748 185 KTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDN--VPAYDSYLITLLKGCDGIYETV 262 (482)
Q Consensus 185 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~--~~~~~~l~~~~~~~~~~~~~a~ 262 (482)
+.+-+..+++.-..-...+..-. +.+...+..|+.+-+.-+ .. .|..+.. ..-++. +...+.. |+.+-
T Consensus 158 ~~~~v~~Ll~~g~~~~~~~~~g~-t~L~~A~~~~~~~~v~~L----l~-~g~~~~~~~~~g~t~-L~~A~~~-~~~~~-- 227 (437)
T 1n11_A 158 KVRVAELLLERDAHPNAAGKNGL-TPLHVAVHHNNLDIVKLL----LP-RGGSPHSPAWNGYTP-LHIAAKQ-NQVEV-- 227 (437)
T ss_dssp CHHHHHHHHHTTCCTTCCCSSCC-CHHHHHHHTTCHHHHHHH----GG-GTCCSCCCCTTCCCH-HHHHHHT-TCHHH--
T ss_pred CHHHHHHHHhCCCCCCCCCCCCC-CHHHHHHHcCCHHHHHHH----Hh-CCCCCCCcCCCCCCH-HHHHHHc-CCHHH--
Confidence 88776666554211111111111 233445566776544333 32 2443321 111222 3334444 66544
Q ss_pred HHHHHHHHcCCCCCHHH--HHHHHHHHHhcCChhHHHHHHHHhhcccCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038748 263 NSLKRMMERGCNPGMTF--FKLAFEECLTGQNLRGAEFIWGAMVGRIGFRP---DTHMYNMMISLYCYSNETGAAMKLLD 337 (482)
Q Consensus 263 ~~~~~m~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~ 337 (482)
++.+.+.|..++... -.+.+...+..|..+-+..+++. +..+ +..-.+.| ...+..|+.+-+ +
T Consensus 228 --~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-----~~~~~~~~~~g~t~L-~~A~~~~~~~~~----~ 295 (437)
T 1n11_A 228 --ARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSK-----QANGNLGNKSGLTPL-HLVAQEGHVPVA----D 295 (437)
T ss_dssp --HHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTT-----TCCTTCCCTTCCCHH-HHHHHHTCHHHH----H
T ss_pred --HHHHHHcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhc-----CCCCCCCCCCCCCHH-HHHHHcCCHHHH----H
Confidence 344445554443221 11234455567776655544432 3222 22222233 334456665544 4
Q ss_pred HHHHCCCCCCH---hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChh---hHHHHHHHHhcCCChHHHHHHHHHHHH
Q 038748 338 EMVYNGAFPDI---QTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHE---NCRAAVRVYMDSDDPYVAIKFWKYMIE 411 (482)
Q Consensus 338 ~m~~~g~~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~ 411 (482)
.+.+.|..++. ...+.|. ..+..|+.+- ++.+.+.|..++.. -.+.|.. .+..|+. ++.+.+.+
T Consensus 296 ~Ll~~g~~~~~~~~~g~t~L~-~A~~~g~~~~----v~~Ll~~gad~n~~~~~g~t~L~~-A~~~g~~----~iv~~Ll~ 365 (437)
T 1n11_A 296 VLIKHGVMVDATTRMGYTPLH-VASHYGNIKL----VKFLLQHQADVNAKTKLGYSPLHQ-AAQQGHT----DIVTLLLK 365 (437)
T ss_dssp HHHHHTCCTTCCCSSCCCHHH-HHHHSSCSHH----HHHHHHTTCCTTCCCTTSCCHHHH-HHHTTCH----HHHHHHHH
T ss_pred HHHhCCccCCCCCCCCCCHHH-HHHHcCcHHH----HHHHHhcCCCCCCCCCCCCCHHHH-HHHCChH----HHHHHHHH
Confidence 44455554432 2233333 3345677654 44455556554432 2233333 3345554 35555667
Q ss_pred cCCCCChh---hHHHHHHHHHhcCChhHHHHHHHHHH
Q 038748 412 NHCSDLSE---TGNLLVAGLCDMHMLPEAVKYAKGMA 445 (482)
Q Consensus 412 ~~~~p~~~---~~~~li~~~~~~g~~~~A~~~~~~m~ 445 (482)
.|..|+.. -.+.+ ....+.|. .+..+++....
T Consensus 366 ~ga~~~~~~~~g~t~l-~~A~~~g~-~~~~~~l~~~~ 400 (437)
T 1n11_A 366 NGASPNEVSSDGTTPL-AIAKRLGY-ISVTDVLKVVT 400 (437)
T ss_dssp TTCCSCCCCSSSCCHH-HHHHHTTC-HHHHHHHHHHC
T ss_pred CcCCCCCCCCCCCCHH-HHHHHcCc-HHHHHHHHhcc
Confidence 77766642 12222 22233343 44555555543
No 311
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=48.58 E-value=1.3e+02 Score=25.94 Aligned_cols=81 Identities=11% Similarity=-0.003 Sum_probs=48.7
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC--hhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 038748 386 CRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHM--LPEAVKYAKGMAEKGIQVTPFALSKLKQIL 463 (482)
Q Consensus 386 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~ 463 (482)
...++.-|...|+.++|.+.++++....+.+ ......+..++-+.++ .+...+++..+.+.|+-+.......+.+.+
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~-e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~Gf~~vl 247 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFHH-ELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGYERIY 247 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGHH-HHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcchH-HHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 4567888988999999999999885211111 1233344444444333 355678888888777765555544444444
Q ss_pred HHhc
Q 038748 464 IKAR 467 (482)
Q Consensus 464 ~~~g 467 (482)
....
T Consensus 248 ~~l~ 251 (307)
T 2zu6_B 248 NEIP 251 (307)
T ss_dssp HHHH
T ss_pred Hhcc
Confidence 3333
No 312
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=48.37 E-value=36 Score=25.81 Aligned_cols=65 Identities=12% Similarity=0.089 Sum_probs=42.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCC--hHHHHHHHHHHHHcCCC
Q 038748 350 TYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDD--PYVAIKFWKYMIENHCS 415 (482)
Q Consensus 350 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~ 415 (482)
....++.-|...|+.++|...++++...... ...+...+..++-+.++ .+.+.+++..+.+.|+-
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 4677888888999999999999998532111 22334445555555332 45677777777776653
No 313
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=48.37 E-value=55 Score=26.41 Aligned_cols=177 Identities=5% Similarity=-0.032 Sum_probs=74.7
Q ss_pred HHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---hhHHHHHHHHH
Q 038748 283 AFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDI---QTYNILFEFLV 359 (482)
Q Consensus 283 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~---~~~~~ll~~~~ 359 (482)
.+...+..|+.+-+..+++.-. ......+..-.+. +...+..|+.+ +++.+.+.|..++. ...+.+ ...+
T Consensus 45 ~L~~A~~~~~~~~v~~Ll~~~~-~~~~~~~~~~~t~-L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l-~~A~ 117 (240)
T 3eu9_A 45 LLHWAAINNRIDLVKYYISKGA-IVDQLGGDLNSTP-LHWATRQGHLS----MVVQLMKYGADPSLIDGEGCSCI-HLAA 117 (240)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTC-CTTCCBTTTTBCH-HHHHHHHTCHH----HHHHHHHTTCCTTCCCTTSCCHH-HHHH
T ss_pred HHHHHHHhCCHHHHHHHHHcCC-cchhhcCCcCCCh-hHHHHHcCCHH----HHHHHHHcCCCCcccCCCCCCHH-HHHH
Confidence 4555666777766655554331 1111111111222 33334456644 34444555655442 222333 3344
Q ss_pred hcCCHHHHHHHHHHHHhCCCccCh---hhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhh---HHHHHHHHHhcCC
Q 038748 360 KGRKLWEASGLFNEMVKNENVLNH---ENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSET---GNLLVAGLCDMHM 433 (482)
Q Consensus 360 ~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~---~~~li~~~~~~g~ 433 (482)
..|+.+ +++.+.+.|..++. .-.+.+..+....+.. ... +.+.+.|..++... -...+...+..|+
T Consensus 118 ~~~~~~----~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~-~~~---~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~ 189 (240)
T 3eu9_A 118 QFGHTS----IVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSV-DPT---RLLLTFNVSVNLGDKYHKNTALHWAVLAGN 189 (240)
T ss_dssp HTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSS-TTH---HHHHHTTCCTTCCCTTTCCCHHHHHHHHTC
T ss_pred HcCHHH----HHHHHHhcCCCccccCCCCCcHHHHHHHhCChH-HHH---HHHHhcCCCcchhhccCCCcHHHHHHHcCC
Confidence 556654 34444445444332 2223333333332222 222 33344444433211 1122333445566
Q ss_pred hhHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHHhccHHHHHHHHHH
Q 038748 434 LPEAVKYAKGMAEKGIQVTPFA--LSKLKQILIKARKEAVYEELLKK 478 (482)
Q Consensus 434 ~~~A~~~~~~m~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~ 478 (482)
.+-+..+ .+.|..++... -.+.+....+.|+.+.+.-+++.
T Consensus 190 ~~~v~~L----l~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~ 232 (240)
T 3eu9_A 190 TTVISLL----LEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEA 232 (240)
T ss_dssp HHHHHHH----HHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHH----HHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHh
Confidence 6544333 34454443211 11234445566776666666554
No 314
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=48.34 E-value=86 Score=25.86 Aligned_cols=28 Identities=11% Similarity=-0.082 Sum_probs=15.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 038748 276 GMTFFKLAFEECLTGQNLRGAEFIWGAM 303 (482)
Q Consensus 276 ~~~~~~~li~~~~~~g~~~~a~~~~~~~ 303 (482)
+.......+..+.+.|+.++|.++|-+.
T Consensus 90 ~~~~~r~~v~~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 90 EIVHLKSGTENMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 3444445555566666666666655443
No 315
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=48.22 E-value=1.5e+02 Score=26.34 Aligned_cols=23 Identities=4% Similarity=0.208 Sum_probs=12.2
Q ss_pred HHHHHHHHhhCChhhHHHHHHHH
Q 038748 139 ASVFSSYVVADRVKDAITTFDVM 161 (482)
Q Consensus 139 ~~li~~~~~~~~~~~a~~~~~~~ 161 (482)
..+|.-|...++.++|...++++
T Consensus 58 ~~ii~EYf~~~d~~Ea~~~l~eL 80 (358)
T 3eiq_C 58 TPIIQEYFEHGDTNEVAEMLRDL 80 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHh
Confidence 34455555555555555555554
No 316
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=47.81 E-value=90 Score=25.05 Aligned_cols=17 Identities=6% Similarity=-0.052 Sum_probs=7.1
Q ss_pred HHHHHhcCChHhHHHHH
Q 038748 177 LSAICRDGKTIDAWQFL 193 (482)
Q Consensus 177 l~~~~~~g~~~~a~~~~ 193 (482)
+...+..|+.+-+..++
T Consensus 46 L~~A~~~~~~~~v~~Ll 62 (240)
T 3eu9_A 46 LHWAAINNRIDLVKYYI 62 (240)
T ss_dssp HHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHH
Confidence 33344444444443333
No 317
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=47.43 E-value=1.1e+02 Score=24.63 Aligned_cols=17 Identities=12% Similarity=0.218 Sum_probs=7.1
Q ss_pred hhCChhhHHHHHHHHHh
Q 038748 147 VADRVKDAITTFDVMEQ 163 (482)
Q Consensus 147 ~~~~~~~a~~~~~~~~~ 163 (482)
..|+.+.+..+++.+.+
T Consensus 18 ~~g~~~~v~~Ll~~~~~ 34 (241)
T 1k1a_A 18 VQGNLPAVHRLVNLFQQ 34 (241)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHh
Confidence 33444444444443333
No 318
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=46.95 E-value=2.2e+02 Score=27.88 Aligned_cols=44 Identities=18% Similarity=0.245 Sum_probs=25.8
Q ss_pred hHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 038748 172 ALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEK 216 (482)
Q Consensus 172 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 216 (482)
+|- +|--|.++|++++|.++.++....+..-...|...+..|+.
T Consensus 155 ~Wa-~IyY~LR~G~~~~A~e~~~~~~~~~~~~d~~F~~~l~~~~~ 198 (661)
T 2qx5_A 155 IWA-LIFYLLRAGLIKEALQVLVENKANIKKVEQSFLTYFKAYAS 198 (661)
T ss_dssp HHH-HHHHHHTTTCHHHHHHHHHHTGGGC-----CHHHHHHHC--
T ss_pred cHH-HHHHHHhcCCHHHHHHHHHHhhhhHhhhhHHHHHHHHHHHh
Confidence 454 66667888888888888877654333333455666666663
No 319
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=45.32 E-value=1.5e+02 Score=25.76 Aligned_cols=36 Identities=11% Similarity=0.193 Sum_probs=26.5
Q ss_pred HhhhcCCCCCHHHHHHHHHhhcCCchhHhHHhhhhh
Q 038748 57 VLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSA 92 (482)
Q Consensus 57 ~l~~~~~~~~~~~~~~ll~~~~~~~~~a~~~~~~~~ 92 (482)
.+...++.+++.....+...+.|+...|+..++...
T Consensus 181 ~~~~~~~~i~~~~~~~i~~~s~G~~r~~~~~l~~~~ 216 (340)
T 1sxj_C 181 VLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCK 216 (340)
T ss_dssp HHHTTTCCBCHHHHHHHHHHHTTCHHHHHHHTTTTT
T ss_pred HHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 334467778888877777788888888888877543
No 320
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=45.11 E-value=68 Score=21.98 Aligned_cols=64 Identities=14% Similarity=0.094 Sum_probs=35.3
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHH
Q 038748 122 DAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAW 190 (482)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 190 (482)
.+++.+.+.++.+......+-. .......+.|.++++.+...|. ..|..++.++...|+..-|.
T Consensus 25 ~vld~L~~~~vlt~~~~e~I~~-~~~~t~~~~ar~Lld~L~~rG~----~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 25 QLWDVLLSRELFRPHMIEDIQR-AGSGSRRDQARQLIIDLETRGS----QALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp TTHHHHHHTTSSCHHHHHHHHT-STTCCHHHHHHHHHHHHTTSCT----THHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHh-ccCCChHHHHHHHHHHHHHcCh----HHHHHHHHHHHHcCcHHHHH
Confidence 3566666666655544443322 0011356677777777766542 35666666666656555443
No 321
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=44.96 E-value=73 Score=23.81 Aligned_cols=56 Identities=5% Similarity=-0.011 Sum_probs=25.8
Q ss_pred HhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcC
Q 038748 128 KKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDG 184 (482)
Q Consensus 128 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 184 (482)
.+.|.-.+..-..++..+...+ .-.|.++++.+.+.+...+..|.---|..+...|
T Consensus 11 ~~~g~r~T~qR~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 11 RQRGYRLTPQRQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp HTTTCCCCHHHHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred HHcCCCcCHHHHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 3344432333444444444444 4455555555555544444444333444444444
No 322
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E
Probab=44.57 E-value=1e+02 Score=23.54 Aligned_cols=25 Identities=16% Similarity=0.384 Sum_probs=11.3
Q ss_pred hhhHHHHHHHHHccCCChHHHHHHHH
Q 038748 241 VPAYDSYLITLLKGCDGIYETVNSLK 266 (482)
Q Consensus 241 ~~~~~~l~~~~~~~~~~~~~a~~~~~ 266 (482)
...+..++..+... ..+-+.+..|+
T Consensus 156 ~i~~~Ef~~~~~~~-~~~~~~l~~~d 180 (183)
T 1s6c_A 156 IVTLDEFLESXQED-DNIMRSLQLFQ 180 (183)
T ss_dssp EECHHHHHHHTTSC-CHHHHHHHHHH
T ss_pred cEeHHHHHHHHhcC-hHHHHHHHHhh
Confidence 33444444444444 44444444444
No 323
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=44.47 E-value=75 Score=23.35 Aligned_cols=59 Identities=12% Similarity=0.150 Sum_probs=31.4
Q ss_pred HHhcCCCCHHHHHHHHHHHHhhC-ChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCC
Q 038748 127 MKKENVLSLATFASVFSSYVVAD-RVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGK 185 (482)
Q Consensus 127 ~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 185 (482)
+.+.|.-.+..-..++..+...+ ..-.|.++++.+.+.+...+..|.---+..+...|-
T Consensus 9 l~~~g~r~T~qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 9 LRKAGLKVTLPRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp HHHTTCCCCHHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHCCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCc
Confidence 44455433344455555555554 556666666666665555555554445555555544
No 324
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=43.34 E-value=1.5e+02 Score=24.97 Aligned_cols=60 Identities=10% Similarity=0.154 Sum_probs=25.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhh
Q 038748 321 SLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHEN 385 (482)
Q Consensus 321 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 385 (482)
...+..|+.+-+.-+++.-..-... +....+..+...+..|+. ++++.+.+.|..++...
T Consensus 166 ~~A~~~g~~~~v~~Ll~~gad~n~~-~~~g~t~~L~~A~~~~~~----~~v~~Ll~~gad~~~~~ 225 (285)
T 3kea_A 166 HITIKNGHVDMMILLLDYMTSTNTN-NSLLFIPDIKLAIDNKDI----EMLQALFKYDINIYSAN 225 (285)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCTT-CCCBCCTTHHHHHHHTCH----HHHHHHTTSCBCSTTTT
T ss_pred HHHHHcChHHHHHHHHHcCCCCCcc-cCCCCChHHHHHHHcCCH----HHHHHHHHcCCCCCCCC
Confidence 3444556666555555443332111 111122212223334443 34455556666665543
No 325
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=43.23 E-value=66 Score=20.91 Aligned_cols=58 Identities=9% Similarity=-0.028 Sum_probs=31.0
Q ss_pred HHHcCCCCChhhHHHHHHHHHhcC-ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Q 038748 409 MIENHCSDLSETGNLLVAGLCDMH-MLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKAR 467 (482)
Q Consensus 409 m~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 467 (482)
+.+.|+..+..- ..++..+...+ ..-.+.++++.+.+.+...+..|....+..+.+.|
T Consensus 8 l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 8 LKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp HHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 445555554322 23334444433 44556666666666655556666666666666555
No 326
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=42.81 E-value=81 Score=23.71 Aligned_cols=60 Identities=8% Similarity=0.088 Sum_probs=32.4
Q ss_pred HHhcCCCCHHHHHHHHHHHHhhC-ChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCh
Q 038748 127 MKKENVLSLATFASVFSSYVVAD-RVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKT 186 (482)
Q Consensus 127 ~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 186 (482)
+.+.|.-.+..-..++..+...+ ..-.|.++++.+.+.+...+..|.---|..+...|-+
T Consensus 8 l~~~g~r~T~qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 8 LKDAGLKVTLPRLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHTTCCCCHHHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHcCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 44455433334445555555554 5556666666666655555555544455555555543
No 327
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=42.61 E-value=17 Score=29.70 Aligned_cols=73 Identities=7% Similarity=-0.111 Sum_probs=35.5
Q ss_pred HHHHHHHcCCCCChh---hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHHhccHHHHHHHHHHH
Q 038748 405 FWKYMIENHCSDLSE---TGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPF--ALSKLKQILIKARKEAVYEELLKKC 479 (482)
Q Consensus 405 ~~~~m~~~~~~p~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~m 479 (482)
+++.+.+.|..++.. -.+. +...++.|+.+-+ +.+.+.|..++.. .-.+.+......|+...+.++.+.+
T Consensus 159 ~~~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~~v----~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~~l 233 (237)
T 3b7b_A 159 IAEILLAAKCDLHAVNIHGDSP-LHIAARENRYDCV----VLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKAL 233 (237)
T ss_dssp HHHHHHTTTCCTTCCCTTCCCH-HHHHHHTTCHHHH----HHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCcCCCCCCH-HHHHHHhCCHhHH----HHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 445555555544432 1222 3333455655433 3334455444321 1112333445667777888888877
Q ss_pred hhC
Q 038748 480 KAH 482 (482)
Q Consensus 480 ~~~ 482 (482)
.++
T Consensus 234 ~ds 236 (237)
T 3b7b_A 234 QDS 236 (237)
T ss_dssp HHC
T ss_pred hcc
Confidence 653
No 328
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=42.28 E-value=1.7e+02 Score=25.78 Aligned_cols=31 Identities=10% Similarity=0.129 Sum_probs=22.2
Q ss_pred HHHHHHHHHhhCChhhHHHHHHHHHhcCCCCC
Q 038748 138 FASVFSSYVVADRVKDAITTFDVMEQYGCKHD 169 (482)
Q Consensus 138 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 169 (482)
...++.++. .++...+..+++.+...|..|.
T Consensus 249 ~~~l~~~~~-~~~~~~~~~~~~~l~~~g~~~~ 279 (373)
T 1jr3_A 249 ALSLVEAMV-EANGERVMALINEAAARGIEWE 279 (373)
T ss_dssp HHHHHHHHH-HTCHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHH-cCCHHHHHHHHHHHHHhCcCHH
Confidence 335555554 4688899999999988886554
No 329
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=42.12 E-value=1.7e+02 Score=25.26 Aligned_cols=149 Identities=11% Similarity=0.066 Sum_probs=66.8
Q ss_pred HHHHHhcCChhHHHHHHHHhhcccCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---hhHHHHHHH
Q 038748 284 FEECLTGQNLRGAEFIWGAMVGRIGFRPD---THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDI---QTYNILFEF 357 (482)
Q Consensus 284 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~---~~~~~ll~~ 357 (482)
+...+..|+.+-+..++++. |..++ ..-.+.+..+... +.......+.+.+.+.|..++. .-.+.| ..
T Consensus 172 L~~A~~~g~~~~v~~LL~~~----gad~n~~d~~g~t~l~~~~~~-~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L-~~ 245 (337)
T 4g8k_A 172 LMDAAEKGHVEVLKILLDEM----GADVNACDNMGRNALIHALLS-SDDSDVEAITHLLLDHGADVNVRGERGKTPL-IL 245 (337)
T ss_dssp HHHHHHHTCHHHHHHHHHHS----CCCTTCCCTTSCCHHHHHHHH-SCTTTHHHHHHHHHHTTCCTTCCCGGGCCHH-HH
T ss_pred HHHHHHCCCHHHHHHHHhcc----CCCcCccCCCCCcHHHHHHHH-cCcccHHHHHHHHHHCCCCCCCcCCCCCCHH-HH
Confidence 33445667776665555432 32222 1122223222222 2222333455556677765543 222333 33
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCccC---hhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh
Q 038748 358 LVKGRKLWEASGLFNEMVKNENVLN---HENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHML 434 (482)
Q Consensus 358 ~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 434 (482)
.+..|..+.+..++.. .|..++ ..-.+.|..+ ++.|+.+ +.+.+++.|..+|..+ .|. ..++.|+.
T Consensus 246 a~~~~~~~~v~~Ll~~---~~~~vn~~d~~G~TpL~~A-~~~g~~~----iv~~Ll~~GAd~n~~~--~L~-~A~~~~~~ 314 (337)
T 4g8k_A 246 AVEKKHLGLVQRLLEQ---EHIEINDTDSDGKTALLLA-VELKLKK----IAELLCKRGASTDCGD--LVM-TARRNYDH 314 (337)
T ss_dssp HHHTTCHHHHHHHHTS---TTCCTTCBCTTSCBHHHHH-HHTTCHH----HHHHHHTTSCSSTTCC--HHH-HHHHTTCH
T ss_pred HHHhhhhHHHHHHHHh---cCCcccCcCCCCCCHHHHH-HHcCCHH----HHHHHHHCCCCCCCCC--HHH-HHHHcCCH
Confidence 4566776655444321 232222 2222233333 3455543 4455566777666544 333 23445554
Q ss_pred hHHHHHHHHHHHcCCCCCH
Q 038748 435 PEAVKYAKGMAEKGIQVTP 453 (482)
Q Consensus 435 ~~A~~~~~~m~~~~~~~~~ 453 (482)
+ +.+-+.+.|-.||.
T Consensus 315 ~----iv~~Ll~~GA~~d~ 329 (337)
T 4g8k_A 315 S----LVKVLLSHGAKEDF 329 (337)
T ss_dssp H----HHHHHHHTTCCC--
T ss_pred H----HHHHHHHCcCCCCC
Confidence 3 44455666766553
No 330
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=41.05 E-value=42 Score=27.25 Aligned_cols=19 Identities=11% Similarity=0.274 Sum_probs=11.1
Q ss_pred HHhcCCHHHHHHHHHHHHh
Q 038748 358 LVKGRKLWEASGLFNEMVK 376 (482)
Q Consensus 358 ~~~~g~~~~a~~~~~~~~~ 376 (482)
....|+.+.+.++.+.+.+
T Consensus 217 A~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 217 ASLNSQVWSALQMSKALQD 235 (237)
T ss_dssp SCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 3455666666666666554
No 331
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=40.87 E-value=1.3e+02 Score=23.68 Aligned_cols=111 Identities=14% Similarity=-0.016 Sum_probs=47.5
Q ss_pred CCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHH
Q 038748 99 HSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLS 178 (482)
Q Consensus 99 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 178 (482)
++...-...+..+++.+..+..-.+. ++... ++...-...+.++.+.+..+ +...+..+.. .++..+-...+.
T Consensus 31 ~~~~vR~~A~~~L~~~~~~~~~~~L~-~~l~~--~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~~ 103 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDERAVEPLI-KALKD--EDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAAV 103 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHH-HHTTC--SCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHH-HHHcC--CCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHHH
Confidence 44455555555555555432222222 22222 24444444455555555432 2222323322 245555555555
Q ss_pred HHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 038748 179 AICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERD 219 (482)
Q Consensus 179 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 219 (482)
++.+.|+.+....+.+.+. .++..+-...+.++.+.|+
T Consensus 104 aL~~~~~~~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~ 141 (211)
T 3ltm_A 104 ALGQIGDERAVEPLIKALK---DEDWFVRIAAAFALGEIGD 141 (211)
T ss_dssp HHHHHCCGGGHHHHHHHTT---CSSHHHHHHHHHHHHHHCC
T ss_pred HHHHhCcHHHHHHHHHHHh---CCCHHHHHHHHHHHHHcCC
Confidence 5555555433333333232 3444444444555554444
No 332
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=40.78 E-value=76 Score=21.77 Aligned_cols=58 Identities=9% Similarity=-0.082 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH-----HHcCCCCCHHHHHHHH
Q 038748 401 VAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGM-----AEKGIQVTPFALSKLK 460 (482)
Q Consensus 401 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-----~~~~~~~~~~~~~~l~ 460 (482)
.|.++.+++...|+.|+..+..-++..|...+- + +.++.++. ...|..|+..+++.+=
T Consensus 27 sae~L~eEfdefGi~~~d~VldKc~ELC~~y~l-d-a~e~VeeWmAFsts~~g~~pT~enL~~FE 89 (101)
T 2keb_A 27 SAQQLAEELQIFGLDCEEALIEKLVELCVQYGQ-N-EEGMVGELIAFCTSTHKVGLTSEILNSFE 89 (101)
T ss_dssp CHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC-C-HHHHHHHHHHHHHHHTCSBCCHHHHHHHH
T ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-C-HHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Confidence 466777777778888888888888877766654 2 44433332 3457778777766554
No 333
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=40.46 E-value=1.1e+02 Score=29.08 Aligned_cols=50 Identities=6% Similarity=0.009 Sum_probs=12.9
Q ss_pred hHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 038748 172 ALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVAN 222 (482)
Q Consensus 172 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 222 (482)
-..-++..|.+.|-.+.|.++++.+....--+...+ ..+..|+++|+++.
T Consensus 518 d~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~~g~~g-eAL~~f~rA~~~~~ 567 (570)
T 3f3f_C 518 DIEWMLSICVEWRLPEIAKEIYTTLGNQMLSAHNII-ESIANFSRAGKYEL 567 (570)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHC------------------------
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHHHHHCccHH-HHHHHHHHcCChhh
Confidence 344444445555555555555544443322333333 33344444444443
No 334
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=39.81 E-value=34 Score=28.36 Aligned_cols=19 Identities=0% Similarity=-0.188 Sum_probs=12.2
Q ss_pred HHhcCChhHHHHHHHHHHH
Q 038748 428 LCDMHMLPEAVKYAKGMAE 446 (482)
Q Consensus 428 ~~~~g~~~~A~~~~~~m~~ 446 (482)
.++.|..+-+..++++-..
T Consensus 232 A~~~g~~~~v~~Ll~~g~~ 250 (260)
T 3jxi_A 232 AAKTGKIGIFQHIIRREIA 250 (260)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHhCCC
Confidence 3566777777777766543
No 335
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=39.61 E-value=62 Score=28.50 Aligned_cols=24 Identities=21% Similarity=0.127 Sum_probs=19.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHh
Q 038748 280 FKLAFEECLTGQNLRGAEFIWGAM 303 (482)
Q Consensus 280 ~~~li~~~~~~g~~~~a~~~~~~~ 303 (482)
...++.-|...|+.++|.+.++++
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el 37 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQEL 37 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHc
Confidence 566777888888888888888877
No 336
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=38.95 E-value=1.9e+02 Score=25.07 Aligned_cols=51 Identities=12% Similarity=-0.041 Sum_probs=31.6
Q ss_pred CHHHHHHHHHHHHhCCCccChh--hHHHHHHHHhcCCChHHHHHHHHHHHHcC
Q 038748 363 KLWEASGLFNEMVKNENVLNHE--NCRAAVRVYMDSDDPYVAIKFWKYMIENH 413 (482)
Q Consensus 363 ~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 413 (482)
+..+..++-..+...++.|... +...-|....+.+++..|..+-+++++.+
T Consensus 185 ~~kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~ 237 (325)
T 3mv2_A 185 NTVRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKII 237 (325)
T ss_dssp CHHHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 4455566666666666655432 23344566677778888777777777754
No 337
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=38.14 E-value=1.9e+02 Score=24.65 Aligned_cols=32 Identities=13% Similarity=0.219 Sum_probs=18.2
Q ss_pred hhcCCCCCHHHHHHHHHhhcCCchhHhHHhhh
Q 038748 59 DKTLIRVSQETVEQVLKFSYSHPGPAVKFFRW 90 (482)
Q Consensus 59 ~~~~~~~~~~~~~~ll~~~~~~~~~a~~~~~~ 90 (482)
.+.|..+++.....+.....|++..+...++.
T Consensus 175 ~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l~~ 206 (319)
T 2chq_A 175 EKEGVKITEDGLEALIYISGGDFRKAINALQG 206 (319)
T ss_dssp HTTCCCBCHHHHHHHHHTTTTCHHHHHHHHHH
T ss_pred HHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 34455566666665555556666665555543
No 338
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=37.96 E-value=82 Score=20.45 Aligned_cols=34 Identities=12% Similarity=0.129 Sum_probs=14.1
Q ss_pred hhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcC
Q 038748 151 VKDAITTFDVMEQYGCKHDVFALNSLLSAICRDG 184 (482)
Q Consensus 151 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 184 (482)
.-.+.++++.+.+.+...+..|..-.+..+...|
T Consensus 33 ~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 33 HVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp SBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 3344444444444333333444333444444333
No 339
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=37.50 E-value=2.1e+02 Score=29.48 Aligned_cols=109 Identities=7% Similarity=-0.028 Sum_probs=64.7
Q ss_pred HHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC----------------
Q 038748 176 LLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPD---------------- 239 (482)
Q Consensus 176 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~---------------- 239 (482)
++..+...|..+-|.++... ++.+...--.+..+|...|++++|...|++.- .|+...
T Consensus 816 l~~~L~~~~~~~~a~eL~~~----~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA--~gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGW----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS--LVLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGG----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC--CTTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHhh----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh--hhcccCcccccchhhhhhccCc
Confidence 55556666666655443322 23344444456667777777777777776653 232211
Q ss_pred ------ChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcC
Q 038748 240 ------NVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGM----TFFKLAFEECLTGQ 291 (482)
Q Consensus 240 ------~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g 291 (482)
....|..++..+-+. +.++.+.++-+..++.--.-|. ..+..++++.+..|
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~-~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEE-SAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred ccccchhHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 112567777777777 9999999888887764322232 35667777766554
No 340
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=37.12 E-value=2e+02 Score=24.78 Aligned_cols=68 Identities=10% Similarity=0.104 Sum_probs=45.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCC--hHHHHHHHHHHHHcCCCCChh
Q 038748 351 YNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDD--PYVAIKFWKYMIENHCSDLSE 419 (482)
Q Consensus 351 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~p~~~ 419 (482)
...++.-|...|+.++|.+.++++..-... ...+...+..+.-+.++ .+...+++..+.+.|+-+...
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q 238 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQ 238 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHH
Confidence 567888898999999999999998532222 22344455555555433 456778888888777744433
No 341
>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein, EF-finger, transport protein; 2.30A {Homo sapiens} SCOP: a.39.1.5
Probab=36.74 E-value=1.6e+02 Score=23.61 Aligned_cols=64 Identities=6% Similarity=0.046 Sum_probs=28.7
Q ss_pred CCHhhHHHHHHHHhhC-CCcHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHhhCChhhHHHHHHHHH
Q 038748 99 HSPYAWNLVVDLLGKN-CLFDAMWDAIKSMKKEN--VLSLATFASVFSSYVVADRVKDAITTFDVME 162 (482)
Q Consensus 99 ~~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 162 (482)
.+..-+..++..+... .....+..+|..+-..+ ..+..-|..++..+......++...+|+.+-
T Consensus 69 I~~~E~~~~l~~l~~~~~~~~~~~~~f~~~D~d~~G~I~~~Ef~~~l~~~~~~~~~~~l~~~F~~~D 135 (224)
T 1s1e_A 69 VNEETFKQIYAQFFPHGDASTYAHYLFNAFDTTQTGSVKFEDFVTALSILLRGTVHEKLRWTFNLYD 135 (224)
T ss_dssp BCHHHHHHHHHTTCTTSCCHHHHHHHHHHHCTTCSSCBCHHHHHHHHHHHHHCCHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHhcCCCCcHHHHHHHHHHhcCCCCCcEeHHHHHHHHHHHccCCHHHHHHHHHHHHc
Confidence 3444444444333222 12334555666654433 3554445444444443333344555555543
No 342
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=36.61 E-value=2.1e+02 Score=24.83 Aligned_cols=42 Identities=7% Similarity=0.071 Sum_probs=25.0
Q ss_pred HHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHh
Q 038748 139 ASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICR 182 (482)
Q Consensus 139 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 182 (482)
..++..+ ..++.+.|..++..+...|..|.. .+..++.....
T Consensus 269 ~~l~~~~-~~~~~~~a~~~l~~l~~~g~~~~~-i~~~l~~~~~~ 310 (353)
T 1sxj_D 269 IEIVEKV-KSGDFDEIKKYVNTFMKSGWSAAS-VVNQLHEYYIT 310 (353)
T ss_dssp HHHHHHH-HSCCHHHHHHHHHHHHHTSCCCTT-HHHHHHHHHHH
T ss_pred HHHHHHH-hcCCHHHHHHHHHHHHHhCCCHHH-HHHHHHHHHHH
Confidence 3344444 357788888888888777766543 33444444443
No 343
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=35.22 E-value=1.6e+02 Score=22.90 Aligned_cols=132 Identities=12% Similarity=0.052 Sum_probs=63.0
Q ss_pred HHHHHHhcCChhHHHHHHHHhhcccCCCCCH---HHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHhh---HHHHH
Q 038748 283 AFEECLTGQNLRGAEFIWGAMVGRIGFRPDT---HMYNMMISLYCY-SNETGAAMKLLDEMVYNGAFPDIQT---YNILF 355 (482)
Q Consensus 283 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~li~~~~~-~~~~~~a~~~~~~m~~~g~~p~~~~---~~~ll 355 (482)
.+...+..|+.+.-.++.+.++ +.|..++. .-++.|..++.. ..+.....++.+.+.+.|..++... .+..+
T Consensus 41 ~Lh~A~~~~~~~~~~~iv~~Ll-~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpL 119 (186)
T 3t8k_A 41 ILYDVLRNNNDEARYKISMFLI-NKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVF 119 (186)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHH-HTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTT
T ss_pred HHHHHHHcCCcchHHHHHHHHH-HCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHH
Confidence 3444555566555455555554 44555432 222333332222 2344455677788888887665432 21222
Q ss_pred HHHHhcCCH-HHHHHHHHHHHh-CCCccChhhHH--HHHHHHhcCCChHHHHHHHHHHHHcCCC
Q 038748 356 EFLVKGRKL-WEASGLFNEMVK-NENVLNHENCR--AAVRVYMDSDDPYVAIKFWKYMIENHCS 415 (482)
Q Consensus 356 ~~~~~~g~~-~~a~~~~~~~~~-~~~~~~~~~~~--~li~~~~~~~~~~~a~~~~~~m~~~~~~ 415 (482)
...+..+.. ..-..+++.+.+ .|..++..... +-+....+.|..+-..-+.+.+.+.+++
T Consensus 120 h~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~~~~~~~ 183 (186)
T 3t8k_A 120 KNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLK 183 (186)
T ss_dssp GGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHHHHHHhcc
Confidence 222233332 344567777777 67665543211 2333344555554443344444444443
No 344
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=33.63 E-value=1.8e+02 Score=23.15 Aligned_cols=53 Identities=15% Similarity=-0.039 Sum_probs=25.6
Q ss_pred cCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCC-----hHHHHHHHHHHHHcCC
Q 038748 361 GRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDD-----PYVAIKFWKYMIENHC 414 (482)
Q Consensus 361 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-----~~~a~~~~~~m~~~~~ 414 (482)
..+.+.|+-++.+|++.| .|....-..++-+....|. ...|...++.....|.
T Consensus 27 GSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 84 (204)
T 2r9g_A 27 GSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGL 84 (204)
T ss_dssp TTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCT
T ss_pred cCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 445666666666666665 4444444444444444443 2233344444444454
No 345
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=33.62 E-value=2.3e+02 Score=24.24 Aligned_cols=19 Identities=11% Similarity=0.062 Sum_probs=12.9
Q ss_pred CChhhHHHHHHHHH-hcCCC
Q 038748 149 DRVKDAITTFDVME-QYGCK 167 (482)
Q Consensus 149 ~~~~~a~~~~~~~~-~~~~~ 167 (482)
++++.+.+.+..+. ..|..
T Consensus 249 ~~~~~~~~~~~~ll~~~g~~ 268 (327)
T 1iqp_A 249 GNFLKAREKLREILLKQGLS 268 (327)
T ss_dssp TCHHHHHHHHHHHHHHHCCC
T ss_pred CCHHHHHHHHHHHHHHcCCC
Confidence 67777777777776 55654
No 346
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=32.99 E-value=2.3e+02 Score=24.26 Aligned_cols=33 Identities=9% Similarity=0.099 Sum_probs=17.2
Q ss_pred hhcCCCCCH-HHHHHHHHhhcCCchhHhHHhhhh
Q 038748 59 DKTLIRVSQ-ETVEQVLKFSYSHPGPAVKFFRWS 91 (482)
Q Consensus 59 ~~~~~~~~~-~~~~~ll~~~~~~~~~a~~~~~~~ 91 (482)
...++.+++ ..+..+.....|+...|+..++.+
T Consensus 186 ~~~~~~~~~~~~~~~l~~~~~gd~R~a~~~L~~~ 219 (324)
T 3u61_B 186 KHEGIAIADMKVVAALVKKNFPDFRKTIGELDSY 219 (324)
T ss_dssp HHHTCCBSCHHHHHHHHHHTCSCTTHHHHHHHHH
T ss_pred HHcCCCCCcHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 344555554 555555555555555555555543
No 347
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=32.81 E-value=86 Score=19.16 Aligned_cols=36 Identities=17% Similarity=0.158 Sum_probs=26.5
Q ss_pred CCCHHHHHHHHHhhcCCchhHhHHhhhhhcCCCCCCC
Q 038748 64 RVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHS 100 (482)
Q Consensus 64 ~~~~~~~~~ll~~~~~~~~~a~~~~~~~~~~~~~~~~ 100 (482)
.++...+..+|..+.|+.+.|+..+-.+... +..|+
T Consensus 22 ~ld~~~I~~vL~a~~gdvd~aI~~LL~m~~~-~~~~~ 57 (59)
T 1wgl_A 22 NMDQEVIRSVLEAQRGNKDAAINSLLQMGEE-PSGPS 57 (59)
T ss_dssp SSCHHHHHHHHTTTTTCHHHHHHHHHHSSCC-CCSCC
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHcCcCC-CCCCC
Confidence 3677788888888888888888888777652 44444
No 348
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=32.80 E-value=67 Score=23.79 Aligned_cols=50 Identities=14% Similarity=0.206 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCh
Q 038748 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKT 186 (482)
Q Consensus 137 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 186 (482)
.-..++..+...+..-.|.++++.+.+.+...+..|.---|..+...|-+
T Consensus 15 qR~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 15 QRAAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp HHHHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCE
Confidence 34455566655556666777777776665555665555555666665543
No 349
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=32.65 E-value=1.7e+02 Score=22.42 Aligned_cols=52 Identities=10% Similarity=-0.116 Sum_probs=34.7
Q ss_pred cCCChHHHHHHHHHHHHcCCCC--ChhhHHHHHH-H-----HHhcCChhHHHHHHHHHHH
Q 038748 395 DSDDPYVAIKFWKYMIENHCSD--LSETGNLLVA-G-----LCDMHMLPEAVKYAKGMAE 446 (482)
Q Consensus 395 ~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~li~-~-----~~~~g~~~~A~~~~~~m~~ 446 (482)
..|++-+|.++|+..-...-.+ +...|..||. . ..+.|+...|..++.+...
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3478888888888776554344 4456666666 2 2356888888888887754
No 350
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=32.61 E-value=2.4e+02 Score=24.35 Aligned_cols=45 Identities=13% Similarity=0.123 Sum_probs=30.6
Q ss_pred cHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHhhCChhhHHHHHHHH
Q 038748 117 FDAMWDAIKSMKKENV--LSLATFASVFSSYVVADRVKDAITTFDVM 161 (482)
Q Consensus 117 ~~~a~~~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 161 (482)
.++.+.-++.-.+.|- --...|.++..-|.+++++++|++++..-
T Consensus 13 ~~r~l~rl~~~I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~g 59 (312)
T 2wpv_A 13 LAKTLQRFENKIKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQG 59 (312)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 4555555555555553 34566888888888889999998887543
No 351
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=32.52 E-value=1.7e+02 Score=27.76 Aligned_cols=86 Identities=9% Similarity=-0.057 Sum_probs=40.1
Q ss_pred hHHHHHHHHHh--cCChHhHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHH
Q 038748 172 ALNSLLSAICR--DGKTIDAWQFLRVVDGRIKP-DNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYL 248 (482)
Q Consensus 172 ~~~~ll~~~~~--~g~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~ 248 (482)
.|..-+..+.. ..+.+......+++...++. +..-..-++..|.+.|-.+.|.++++.+-.+ -+. +...+ .-+
T Consensus 481 LW~vgI~yL~~~~~~~~~~gr~~IselLpr~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k-~l~--~g~~g-eAL 556 (570)
T 3f3f_C 481 LWPVAIGLIALSATGTRSAKKMVIAELLPHYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQ-MLS--AHNII-ESI 556 (570)
T ss_dssp THHHHHHHHHHCSSSCHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC----------------
T ss_pred chhHHHHHHhcCCccchhHHHHHHHHHhccCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH-HHH--CccHH-HHH
Confidence 34444444443 23444555666665443333 4456778899999999999999999988643 222 22344 556
Q ss_pred HHHHccCCChHHHH
Q 038748 249 ITLLKGCDGIYETV 262 (482)
Q Consensus 249 ~~~~~~~~~~~~a~ 262 (482)
..+.+. |+++.+.
T Consensus 557 ~~f~rA-~~~~~Vk 569 (570)
T 3f3f_C 557 ANFSRA-GKYELVK 569 (570)
T ss_dssp --------------
T ss_pred HHHHHc-CChhhcc
Confidence 777777 8877653
No 352
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=32.30 E-value=1.8e+02 Score=22.80 Aligned_cols=18 Identities=11% Similarity=0.171 Sum_probs=7.9
Q ss_pred CCHhhHHHHHHHHHhcCC
Q 038748 168 HDVFALNSLLSAICRDGK 185 (482)
Q Consensus 168 ~~~~~~~~ll~~~~~~g~ 185 (482)
++...-...+..+.+.|.
T Consensus 31 ~~~~vR~~A~~~L~~~~~ 48 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGD 48 (211)
T ss_dssp SSHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHhCC
Confidence 344444444444444444
No 353
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=31.82 E-value=3.3e+02 Score=25.61 Aligned_cols=65 Identities=11% Similarity=0.177 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCH--hhH-HHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038748 313 THMYNMMISLYCYSNETGAAMKLLDEMVYNGA-FPDI--QTY-NILFEFLVKGRKLWEASGLFNEMVKN 377 (482)
Q Consensus 313 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~~--~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~ 377 (482)
...+|.+++.|...+.++.|..+..+..---. .++. .+| ..+...+.-.+++.+|.+.+......
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 66789999999999999999999987742100 0111 122 22334456678999999988887764
No 354
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=31.76 E-value=84 Score=18.72 Aligned_cols=18 Identities=17% Similarity=0.067 Sum_probs=8.5
Q ss_pred HHHHhcc--HHHHHHHHHHH
Q 038748 462 ILIKARK--EAVYEELLKKC 479 (482)
Q Consensus 462 ~~~~~g~--~~~a~~~~~~m 479 (482)
|+.+.|. .+.|.+++.+|
T Consensus 29 Alk~Tg~~Gle~AmewL~k~ 48 (54)
T 2cos_A 29 ALKQTGSRSIEAALEYISKM 48 (54)
T ss_dssp HHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHhCcccHHHHHHHHHHh
Confidence 4444444 45555555444
No 355
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=31.73 E-value=79 Score=23.39 Aligned_cols=45 Identities=11% Similarity=-0.027 Sum_probs=21.8
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 038748 388 AAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMH 432 (482)
Q Consensus 388 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 432 (482)
.++..+...++.-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 344445444455556666666655544444444333344444444
No 356
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=31.39 E-value=3.2e+02 Score=25.29 Aligned_cols=23 Identities=17% Similarity=0.226 Sum_probs=10.4
Q ss_pred HHHHHHHHHhhCChhhHHHHHHH
Q 038748 138 FASVFSSYVVADRVKDAITTFDV 160 (482)
Q Consensus 138 ~~~li~~~~~~~~~~~a~~~~~~ 160 (482)
|..-...+...|++++|.++--.
T Consensus 364 ~~~~F~~l~~~g~y~~AA~~aA~ 386 (494)
T 1bpo_A 364 FARKFNALFAQGNYSEAAKVAAN 386 (494)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHh
Confidence 44344444444555554444433
No 357
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=29.75 E-value=1.3e+02 Score=20.45 Aligned_cols=62 Identities=16% Similarity=0.038 Sum_probs=30.3
Q ss_pred cHHHHhhhcCCCCCHHHHHHHHHh-hcCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHH
Q 038748 53 TVEDVLDKTLIRVSQETVEQVLKF-SYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAM 120 (482)
Q Consensus 53 ~~~~~l~~~~~~~~~~~~~~ll~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 120 (482)
.+...|.+.|+ ++......+... ...+.+.|.++++.+..+ .+.+|..++.++...|...-|
T Consensus 25 ~vld~L~~~~v-lt~~~~e~I~~~~~~t~~~~ar~Lld~L~~r-----G~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 25 QLWDVLLSREL-FRPHMIEDIQRAGSGSRRDQARQLIIDLETR-----GSQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp TTHHHHHHTTS-SCHHHHHHHHTSTTCCHHHHHHHHHHHHTTS-----CTTHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHcCC-CCHHHHHHHHhccCCChHHHHHHHHHHHHHc-----ChHHHHHHHHHHHHcCcHHHH
Confidence 34455554443 344444444432 123455666666655542 235566666666554544433
No 358
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=29.74 E-value=52 Score=23.69 Aligned_cols=54 Identities=6% Similarity=-0.021 Sum_probs=34.4
Q ss_pred hhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHH
Q 038748 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITT 157 (482)
Q Consensus 102 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 157 (482)
..|--.|...+.+++.+-|.++++.+.+.| +...|.+.+-.|...=+++.++++
T Consensus 33 kLykDAietAa~S~d~elaEeLL~yFVe~g--~kEcF~A~LytCYdLlrpDvVLEl 86 (125)
T 3qil_A 33 SLYKDAMQYASESKDTELAEELLQWFLQEE--KRECFGACLFTCYDLLRPDVVLEL 86 (125)
T ss_dssp CCSSHHHHTTTSSCCSHHHHHHHHHHTTSC--SHHHHHHHHHHHTTCSCTTHHHHT
T ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHcC--chHHHHHHHHHHHhccChHHHHHH
Confidence 345556666667777777777777776665 555566666666666566555543
No 359
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=29.73 E-value=97 Score=22.53 Aligned_cols=46 Identities=15% Similarity=0.128 Sum_probs=26.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCH
Q 038748 319 MISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKL 364 (482)
Q Consensus 319 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 364 (482)
++..+...+..-.|.++++.+.+.+...+..|..-.+..+...|-+
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 61 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLV 61 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSE
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCE
Confidence 4444444555566666777666665555555655555666665543
No 360
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=29.46 E-value=85 Score=22.86 Aligned_cols=44 Identities=9% Similarity=-0.120 Sum_probs=20.3
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 038748 389 AVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMH 432 (482)
Q Consensus 389 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 432 (482)
++..+...+..-.|.++++.+.+.+...+..|....+..+...|
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 34444444445555555555555443333333333344444444
No 361
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=29.34 E-value=1.1e+02 Score=19.20 Aligned_cols=51 Identities=14% Similarity=0.060 Sum_probs=36.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccHHH
Q 038748 420 TGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAV 471 (482)
Q Consensus 420 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 471 (482)
.++-++..++...-.++++..++++.+.| ..+...|..-.+.+++..-..+
T Consensus 4 l~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~LaReQF~~R 54 (65)
T 2f6m_A 4 GLNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELARQQFLVR 54 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 35566677777677788888888888887 4677777777777776654433
No 362
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP, structural genomics, PSI; 1.95A {Leishmania major} SCOP: a.39.1.8
Probab=29.33 E-value=2e+02 Score=22.25 Aligned_cols=12 Identities=0% Similarity=0.030 Sum_probs=5.6
Q ss_pred CchHHHHHHHhh
Q 038748 36 PPTIKTLCEIIA 47 (482)
Q Consensus 36 ~~~~~~~~~~l~ 47 (482)
...+..+...+.
T Consensus 26 ~~~l~~~F~~~D 37 (191)
T 1y1x_A 26 NQELMEWFRAVD 37 (191)
T ss_dssp TSCHHHHHHHHC
T ss_pred HHHHHHHHHHHc
Confidence 334555555443
No 363
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=29.12 E-value=64 Score=25.02 Aligned_cols=48 Identities=13% Similarity=0.196 Sum_probs=27.2
Q ss_pred hhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhC
Q 038748 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVAD 149 (482)
Q Consensus 102 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 149 (482)
..++.++..++...-.+.++..+.+....|..+..+|-.-++.+++..
T Consensus 112 ~l~~Qll~l~Aed~AieDaIy~L~~al~~g~I~ld~ylK~vR~LaReQ 159 (174)
T 2p22_A 112 DGLNQLYNLVAQDYALTDTIECLSRMLHRGTIPLDTFVKQGRELARQQ 159 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 345555565555555566666666666666555555555555555443
No 364
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=28.48 E-value=2.9e+02 Score=23.97 Aligned_cols=53 Identities=8% Similarity=0.053 Sum_probs=36.4
Q ss_pred ChHHHHHHHHHHHHcCCCCCh--hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 038748 398 DPYVAIKFWKYMIENHCSDLS--ETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQ 450 (482)
Q Consensus 398 ~~~~a~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 450 (482)
+.....++-..+...++.|.. -+...-+....+.+++..|-.+.+++++.+..
T Consensus 185 ~~kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~ 239 (325)
T 3mv2_A 185 NTVRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISS 239 (325)
T ss_dssp CHHHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred cHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 445555555555555666554 23455566778899999999999999988743
No 365
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=28.18 E-value=1.5e+02 Score=25.89 Aligned_cols=18 Identities=0% Similarity=-0.173 Sum_probs=8.2
Q ss_pred hhhHHHHHHHHHhcCCCC
Q 038748 151 VKDAITTFDVMEQYGCKH 168 (482)
Q Consensus 151 ~~~a~~~~~~~~~~~~~~ 168 (482)
++.+.+.+..+...|..+
T Consensus 279 ~~~~~~~l~~l~~~g~~~ 296 (354)
T 1sxj_E 279 LIECRAVLYDLLAHCIPA 296 (354)
T ss_dssp HHHHHHHHHHHHTTTCCH
T ss_pred HHHHHHHHHHHHHcCCCH
Confidence 344444444444445443
No 366
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=28.18 E-value=1.1e+02 Score=20.22 Aligned_cols=34 Identities=18% Similarity=0.295 Sum_probs=25.5
Q ss_pred CHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHcc
Q 038748 219 DVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG 254 (482)
Q Consensus 219 ~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 254 (482)
..++|...|.+|+...++.|. .+|...+...+..
T Consensus 15 t~eea~~~Fk~LL~e~~V~p~--~tWe~~~~~i~~D 48 (82)
T 2dod_A 15 PLEARMKQFKDMLLERGVSAF--STWEKELHKIVFD 48 (82)
T ss_dssp CHHHHHHHHHHHHHHTTCCSS--SCHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHcCcCCC--CCHHHHHHHHccC
Confidence 457888899999888888884 3677777666655
No 367
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=28.16 E-value=1.1e+02 Score=26.90 Aligned_cols=38 Identities=3% Similarity=-0.108 Sum_probs=26.6
Q ss_pred HHHHhhhcCCCCCHHHHHHHHHhhcCCchhHhHHhhhh
Q 038748 54 VEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWS 91 (482)
Q Consensus 54 ~~~~l~~~~~~~~~~~~~~ll~~~~~~~~~a~~~~~~~ 91 (482)
+...+.+.|+.+++.....++....|+...+...++.+
T Consensus 151 l~~~~~~~g~~i~~~a~~~l~~~~~gdl~~~~~elekl 188 (343)
T 1jr3_D 151 VAARAKQLNLELDDAANQVLCYCYEGNLLALAQALERL 188 (343)
T ss_dssp HHHHHHHTTCEECHHHHHHHHHSSTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHhchHHHHHHHHHHHH
Confidence 33556667777888777777777777777777766644
No 368
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=28.15 E-value=3e+02 Score=24.03 Aligned_cols=26 Identities=12% Similarity=0.203 Sum_probs=22.3
Q ss_pred hHHHHHHHHHccCCChHHHHHHHHHHH
Q 038748 243 AYDSYLITLLKGCDGIYETVNSLKRMM 269 (482)
Q Consensus 243 ~~~~l~~~~~~~~~~~~~a~~~~~~m~ 269 (482)
....++.-|+.. |+.++|.+.++++.
T Consensus 13 ~~~~ll~Ey~~~-~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 13 KSKAIIEEYLHL-NDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHHH-CCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhC-CCHHHHHHHHHHcC
Confidence 467788999999 99999999998874
No 369
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=27.78 E-value=2.8e+02 Score=23.54 Aligned_cols=29 Identities=7% Similarity=0.143 Sum_probs=16.6
Q ss_pred cCCCCCHHHHHHHHHhhcCCchhHhHHhh
Q 038748 61 TLIRVSQETVEQVLKFSYSHPGPAVKFFR 89 (482)
Q Consensus 61 ~~~~~~~~~~~~ll~~~~~~~~~a~~~~~ 89 (482)
.|..+++.....+...+.|++..|...++
T Consensus 182 ~~~~~~~~~~~~l~~~~~G~~r~a~~~l~ 210 (323)
T 1sxj_B 182 EDVKYTNDGLEAIIFTAEGDMRQAINNLQ 210 (323)
T ss_dssp HTCCBCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 45555555555555555666665555554
No 370
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=27.39 E-value=1.5e+02 Score=20.32 Aligned_cols=34 Identities=12% Similarity=0.212 Sum_probs=24.0
Q ss_pred hhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCC
Q 038748 152 KDAITTFDVMEQYGCKHDVFALNSLLSAICRDGK 185 (482)
Q Consensus 152 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 185 (482)
-.|.++.+++...|+.|+..+...++..|...+-
T Consensus 26 Vsae~L~eEfdefGi~~~d~VldKc~ELC~~y~l 59 (101)
T 2keb_A 26 ASAQQLAEELQIFGLDCEEALIEKLVELCVQYGQ 59 (101)
T ss_dssp CCHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC
T ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Confidence 3466667777777777777777777777776653
No 371
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=27.23 E-value=59 Score=24.10 Aligned_cols=13 Identities=8% Similarity=0.176 Sum_probs=6.1
Q ss_pred HHhccHHHHHHHH
Q 038748 464 IKARKEAVYEELL 476 (482)
Q Consensus 464 ~~~g~~~~a~~~~ 476 (482)
.+.|+.+-+.-++
T Consensus 141 ~~~~~~~~v~~Ll 153 (156)
T 1bd8_A 141 LQRGAQDLVDILQ 153 (156)
T ss_dssp HHSCCHHHHHHHH
T ss_pred HHcCcHHHHHHHH
Confidence 3455554444443
No 372
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=27.18 E-value=2.4e+02 Score=22.45 Aligned_cols=32 Identities=6% Similarity=-0.207 Sum_probs=14.1
Q ss_pred CCHHHHHHHHHHHHhCCCccChhhHHHHHHHH
Q 038748 362 RKLWEASGLFNEMVKNENVLNHENCRAAVRVY 393 (482)
Q Consensus 362 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 393 (482)
.+.+.|+-++.+|++.|-.|....-..++-+.
T Consensus 21 SDpDAAly~LaRMl~~GEDp~~IaRRLvi~As 52 (201)
T 3bge_A 21 SAPDAALYWYARILTAGGDPLYVARRLLAIAS 52 (201)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 44455555555555544444333333333333
No 373
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=27.18 E-value=1.7e+02 Score=20.81 Aligned_cols=9 Identities=22% Similarity=0.231 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 038748 331 AAMKLLDEM 339 (482)
Q Consensus 331 ~a~~~~~~m 339 (482)
+|+.-+++.
T Consensus 6 ~al~~L~e~ 14 (119)
T 1wty_A 6 RAVERLKAA 14 (119)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 374
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=27.17 E-value=73 Score=19.49 Aligned_cols=28 Identities=18% Similarity=0.126 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHH-cCCCCChhhHHHHHHHH
Q 038748 400 YVAIKFWKYMIE-NHCSDLSETGNLLVAGL 428 (482)
Q Consensus 400 ~~a~~~~~~m~~-~~~~p~~~~~~~li~~~ 428 (482)
++|.+.|.+|++ .++.|+ -+|...+..+
T Consensus 3 eEae~aF~~lL~~~~V~s~-wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDST-WSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSS-CCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCC-CcHHHHHHHh
Confidence 456666666553 344333 5666666655
No 375
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=27.16 E-value=1.4e+02 Score=19.98 Aligned_cols=61 Identities=11% Similarity=0.091 Sum_probs=35.4
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChH
Q 038748 120 MWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTI 187 (482)
Q Consensus 120 a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 187 (482)
...+++.+.+.++.+..-+..+-.. ....++|..+++.+...| ...|..++.++...+...
T Consensus 24 v~~lld~L~~~~vlt~~~~e~I~~~---~t~~~kar~Lld~l~~kG----~~af~~F~~aL~~~~~~~ 84 (94)
T 2p1h_A 24 TSYIMDHMISDGFLTISEEEKVRNE---PTQQQRAAMLIKMILKKD----NDSYVSFYNALLHEGYKD 84 (94)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHTS---SSHHHHHHHHHHHHTTSC----HHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHcC---CChHHHHHHHHHHHHHcC----HHHHHHHHHHHHHcCHHH
Confidence 3456666666666665555444432 456666777776665533 456666666666655433
No 376
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=26.34 E-value=2.1e+02 Score=21.63 Aligned_cols=49 Identities=4% Similarity=-0.066 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCC
Q 038748 365 WEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCS 415 (482)
Q Consensus 365 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 415 (482)
+.+..++..+.+.|..-|...-..++......| .....+-.++..+|+.
T Consensus 47 ~~i~~vl~~l~~~g~ldD~rfA~~~v~~~~~~g--~G~~~I~~eL~~KGI~ 95 (159)
T 3c1d_A 47 EDYERVIAWCHEHGYLDDSRFVARFIASRSRKG--YGPARIRQELNQKGIS 95 (159)
T ss_dssp HHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHTT--CCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHcCCcCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHcCCC
Confidence 334445555555555433333334444443322 1233444555555553
No 377
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=25.83 E-value=4.2e+02 Score=24.91 Aligned_cols=63 Identities=13% Similarity=0.091 Sum_probs=45.6
Q ss_pred HhhHHHHHHHHHhcCChHhHHHHHHHhhC--CCCCCHH--H-HHHHHHHHHhcCCHHHHHHHHHHhHH
Q 038748 170 VFALNSLLSAICRDGKTIDAWQFLRVVDG--RIKPDND--T-YAILLEGWEKERDVANAKKTFGEMVI 232 (482)
Q Consensus 170 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~~~~~~--~-~~~l~~~~~~~~~~~~a~~~~~~~~~ 232 (482)
...+|.+++.|...+.++.|..+.....- ...+|.. . +..+...+.-.+++.+|.+.+.....
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~r 298 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIR 298 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 45688999999999999999999998752 1112211 2 22345667778999999998888764
No 378
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=25.80 E-value=2.3e+02 Score=21.92 Aligned_cols=51 Identities=4% Similarity=-0.018 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCc
Q 038748 329 TGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENV 380 (482)
Q Consensus 329 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 380 (482)
.+.+..+++.+.+.|.--|...-...+....+.|.+ ....+-.++...|+.
T Consensus 49 ~~~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~-G~~~I~~eL~~KGI~ 99 (177)
T 3e3v_A 49 EDYISEIINKLIDLDLINDKNYAESYVRTMMNTSDK-GPKVIKLNLSKKGID 99 (177)
T ss_dssp HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcccc-cHHHHHHHHHHcCCC
Confidence 344555666666666654444444444444443332 234455555555654
No 379
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=25.26 E-value=2.6e+02 Score=22.28 Aligned_cols=17 Identities=24% Similarity=0.489 Sum_probs=8.2
Q ss_pred CChHHHHHHHHHHHHcC
Q 038748 256 DGIYETVNSLKRMMERG 272 (482)
Q Consensus 256 ~~~~~a~~~~~~m~~~~ 272 (482)
.+.+.|+-++.+|++.|
T Consensus 28 SDpDAAly~LaRml~~G 44 (204)
T 2r9g_A 28 SDVDAALHYLARLVEAG 44 (204)
T ss_dssp TCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHcC
Confidence 44444444444444444
No 380
>3ph0_C ASCG; type III secretion system, chapero; 2.40A {Aeromonas hydrophila}
Probab=24.91 E-value=1.2e+02 Score=18.28 Aligned_cols=13 Identities=23% Similarity=0.289 Sum_probs=6.7
Q ss_pred chhHhHHhhhhhc
Q 038748 81 PGPAVKFFRWSAY 93 (482)
Q Consensus 81 ~~~a~~~~~~~~~ 93 (482)
.++|..+-+|+..
T Consensus 22 H~EA~tIA~~L~~ 34 (61)
T 3ph0_C 22 HQEAASIADWLAQ 34 (61)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 3555555555544
No 381
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=24.78 E-value=4.2e+02 Score=24.52 Aligned_cols=154 Identities=12% Similarity=0.071 Sum_probs=97.7
Q ss_pred CCHHHHHHHHHhhcCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 038748 65 VSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSS 144 (482)
Q Consensus 65 ~~~~~~~~ll~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 144 (482)
++...+.-.+.....+++.|.++-.. .+.+--...|..-...+...|++++|.++--..+..-..+..|.+.+-..
T Consensus 329 v~e~~ivpyi~~~l~n~~lA~~lA~R----~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~giLRt~~Ti~rFk~v 404 (494)
T 1bpo_A 329 VEEENIIPYITNVLQNPDLALRMAVR----NNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSV 404 (494)
T ss_dssp ECTTTHHHHHHHTTCCHHHHHHHHHH----TTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGGSSCSHHHHHHHTTS
T ss_pred EccccchhhhhhccCCHHHHHHHHHh----cCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccccccCHHHHHHHhcC
Confidence 44444444444334677777766653 35555666787778888899999999998887776655777777776665
Q ss_pred HHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 038748 145 YVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAK 224 (482)
Q Consensus 145 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 224 (482)
=...|...-.+..|..+.+.|- .+..----+++.-...|+.+-.++++.+=+ +..+...=. ++ +..+..-|+
T Consensus 405 p~~pgq~splL~YF~~Ll~~g~-Ln~~ESlEl~r~vL~q~r~~llekWl~e~K--L~~SEeLGD-lv----k~~d~~LAl 476 (494)
T 1bpo_A 405 PAQPGQTSPLLQYFGILLDQGQ-LNKYESLELCRPVLQQGRKQLLEKWLKEDK--LECSEELGD-LV----KSVDPTLAL 476 (494)
T ss_dssp CCCTTSCCHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHTC--SCCCHHHHH-HH----HHHCSHHHH
T ss_pred CCCCCCCCHHHHHHHHHhccCc-cchHHhhHHhHHHHhccHHHHHHHHHhcCC--ccccHHhHh-hh----hhcCHHHHH
Confidence 5566777778888888887763 454444446666667777777666665422 333333222 22 344566677
Q ss_pred HHHHHh
Q 038748 225 KTFGEM 230 (482)
Q Consensus 225 ~~~~~~ 230 (482)
.+|.+.
T Consensus 477 ~IY~~a 482 (494)
T 1bpo_A 477 SVYLRA 482 (494)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 776655
No 382
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=24.02 E-value=80 Score=26.32 Aligned_cols=191 Identities=9% Similarity=-0.000 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhhcccCCCC-------CHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCC------
Q 038748 281 KLAFEECLTGQNLRGAEFIWGAMVGRIGFRP-------DTHMYNMMISLYCY--SNETGAAMKLLDEMVYNGAF------ 345 (482)
Q Consensus 281 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-------~~~~~~~li~~~~~--~~~~~~a~~~~~~m~~~g~~------ 345 (482)
.+.+...++.|+.+.+..+++... ..+... +..-++.|..+... .|+.+-+..+++.....+..
T Consensus 14 ~t~L~~A~~~g~~~~v~~Ll~~~~-~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~ 92 (273)
T 2pnn_A 14 RRSIFDAVAQSNCQELESLLPFLQ-RSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNA 92 (273)
T ss_dssp HHHHHHHHHTTCSSTTTTHHHHHH-HSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTC
T ss_pred chHHHHHHHcCCHHHHHHHHHHHh-hcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhc
Q ss_pred ----CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhh----------------HHHHHHHHhcCCChHHHHHH
Q 038748 346 ----PDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHEN----------------CRAAVRVYMDSDDPYVAIKF 405 (482)
Q Consensus 346 ----p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----------------~~~li~~~~~~~~~~~a~~~ 405 (482)
.|....+.|..++.... .++++.+++.|..++... -.+.+...+..|+.+-+.-+
T Consensus 93 ~~~~~d~~g~tpL~~A~~~g~-----~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~L 167 (273)
T 2pnn_A 93 SYTDSYYKGQTALHIAIERRN-----MTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFL 167 (273)
T ss_dssp CCCSTTTTTCCHHHHHHHTTC-----HHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHH
T ss_pred ccccccCCCCCHHHHHHHcCC-----HHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHH
Q ss_pred HH---HHHHcCCCCChhhHHHHHHHHHhcCChhHH----HHHHHHHHHcCCCCC---------HHHHHHHHHHHHHhccH
Q 038748 406 WK---YMIENHCSDLSETGNLLVAGLCDMHMLPEA----VKYAKGMAEKGIQVT---------PFALSKLKQILIKARKE 469 (482)
Q Consensus 406 ~~---~m~~~~~~p~~~~~~~li~~~~~~g~~~~A----~~~~~~m~~~~~~~~---------~~~~~~l~~~~~~~g~~ 469 (482)
++ .-...+. .|..-.+.|..+........+- .++++.+.+.|..++ ...-.+-+....+.|..
T Consensus 168 l~~~~~gad~~~-~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~ 246 (273)
T 2pnn_A 168 LQNSWQPADISA-RDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKI 246 (273)
T ss_dssp HHCSSCCCCTTC-CCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCH
T ss_pred HhcccCCCCcee-eCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChH
Q ss_pred HHHHHHHHH
Q 038748 470 AVYEELLKK 478 (482)
Q Consensus 470 ~~a~~~~~~ 478 (482)
+-+..+++.
T Consensus 247 ~iv~~Ll~~ 255 (273)
T 2pnn_A 247 GVLAYILQR 255 (273)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHC
No 383
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=24.01 E-value=2.7e+02 Score=22.02 Aligned_cols=180 Identities=10% Similarity=0.070 Sum_probs=85.7
Q ss_pred HHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCC---HHHHHHHHHHH
Q 038748 247 YLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD---THMYNMMISLY 323 (482)
Q Consensus 247 l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~li~~~ 323 (482)
.+...+.. |+.+.+..++..-...-...+..-.+ .+...+..|+.+-+..+++. |..++ ..-++.| ...
T Consensus 9 ~l~~A~~~-g~~~~v~~ll~~~~~~~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll~~-----g~~~~~~~~~g~t~L-~~A 80 (231)
T 3aji_A 9 MICNLAYS-GKLDELKERILADKSLATRTDQDSRT-ALHWACSAGHTEIVEFLLQL-----GVPVNDKDDAGWSPL-HIA 80 (231)
T ss_dssp HHHHHHHH-TCHHHHHHHHHHCGGGGGCCCTTSCC-HHHHHHHHTCHHHHHHHHHT-----TCCSCCCCTTSCCHH-HHH
T ss_pred hHHHHHHh-CCHHHHHHHHHhchhhhhcCCCCCCC-HHHHHHHcCcHHHHHHHHHh-----CCCCCCcCCCCCCHH-HHH
Confidence 35555666 88888887776532211122322233 34455667777666555543 33332 2223333 333
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCH---hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhh--HHHHHHHHhcCCC
Q 038748 324 CYSNETGAAMKLLDEMVYNGAFPDI---QTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHEN--CRAAVRVYMDSDD 398 (482)
Q Consensus 324 ~~~~~~~~a~~~~~~m~~~g~~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~~~ 398 (482)
+..|+.+ +++.+.+.|..++. ...+.+. ..+..|+.+-+ +.+.+.|..++... -.+.+...+..|+
T Consensus 81 ~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~-~A~~~~~~~~~----~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 151 (231)
T 3aji_A 81 ASAGXDE----IVKALLVKGAHVNAVNQNGCTPLH-YAASKNRHEIA----VMLLEGGANPDAKDHYDATAMHRAAAKGN 151 (231)
T ss_dssp HHHTCHH----HHHHHHHTTCCTTCCCTTSCCHHH-HHHHTTCHHHH----HHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred HHcCHHH----HHHHHHHcCCCCCCCCCCCCCHHH-HHHHcCCHHHH----HHHHHcCCCCCCcCCCCCcHHHHHHHcCC
Confidence 4556654 44555666655433 2233333 34456776544 44445555443321 1122333344555
Q ss_pred hHHHHHHHHHHHHcCCCCChh---hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 038748 399 PYVAIKFWKYMIENHCSDLSE---TGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVT 452 (482)
Q Consensus 399 ~~~a~~~~~~m~~~~~~p~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 452 (482)
.+ +++.+.+.|..++.. -.+.+ ...+..|..+ +++.+.+.|..++
T Consensus 152 ~~----~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~----~v~~Ll~~ga~~~ 199 (231)
T 3aji_A 152 LK----MVHILLFYKASTNIQDTEGNTPL-HLACDEERVE----EAKFLVTQGASIY 199 (231)
T ss_dssp HH----HHHHHHHTTCCSCCCCTTSCCHH-HHHHHTTCHH----HHHHHHHTTCCSC
T ss_pred HH----HHHHHHhcCCCccccCCCCCCHH-HHHHHCCCHH----HHHHHHHCCCCCC
Confidence 54 444455566555432 22333 3344556654 3444455676554
No 384
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=23.94 E-value=2.4e+02 Score=21.50 Aligned_cols=53 Identities=9% Similarity=-0.064 Sum_probs=39.3
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCC--CHHHHHHHHH------HHHHhccHHHHHHHHHHHh
Q 038748 428 LCDMHMLPEAVKYAKGMAEKGIQV--TPFALSKLKQ------ILIKARKEAVYEELLKKCK 480 (482)
Q Consensus 428 ~~~~g~~~~A~~~~~~m~~~~~~~--~~~~~~~l~~------~~~~~g~~~~a~~~~~~m~ 480 (482)
+...|++-+|-++++..=.....+ ....|..||+ ...+.|+...|..++++..
T Consensus 42 lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al 102 (161)
T 2ijq_A 42 LYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSL 102 (161)
T ss_dssp HHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 345599999999999985443345 5567777777 2456799999999988764
No 385
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=22.88 E-value=2.7e+02 Score=21.58 Aligned_cols=115 Identities=13% Similarity=0.121 Sum_probs=70.4
Q ss_pred CHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 038748 363 KLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAK 442 (482)
Q Consensus 363 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 442 (482)
..+.+..++..+.+.|..-|...-..++....+.|.+ ....+-.++..+|+.++ +....+..+......+.|..+++
T Consensus 48 ~~~~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~-G~~~I~~eL~~KGI~~~--~I~~al~~~~~~de~e~a~~l~~ 124 (177)
T 3e3v_A 48 HEDYISEIINKLIDLDLINDKNYAESYVRTMMNTSDK-GPKVIKLNLSKKGIDDN--IAEDALILYTDKLQVEKGVTLAE 124 (177)
T ss_dssp CHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHTTTCCHH--HHHHHHTTSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcccc-cHHHHHHHHHHcCCCHH--HHHHHHHhCCchhHHHHHHHHHH
Confidence 4566788999999999886766666777777655433 24667778888998543 21222211111122345666666
Q ss_pred HHHHc-CCCCCHHHHHHHHHHHHHhc-cHHHHHHHHHHHh
Q 038748 443 GMAEK-GIQVTPFALSKLKQILIKAR-KEAVYEELLKKCK 480 (482)
Q Consensus 443 ~m~~~-~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~ 480 (482)
+-... .-.++......++..+.+.| .++.+..+++.+.
T Consensus 125 Kk~~~~~~~~~~~~~~K~~~~L~rrGF~~~~I~~vl~~l~ 164 (177)
T 3e3v_A 125 KLANRYSHDSYRNKQNKIKQSLLTKGFSYDIIDTIIQELD 164 (177)
T ss_dssp HHHHHTTTSCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHhhccCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHCc
Confidence 54322 22233456677888888888 5677777777654
No 386
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=22.17 E-value=1.8e+02 Score=20.77 Aligned_cols=41 Identities=5% Similarity=-0.068 Sum_probs=19.5
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038748 336 LDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK 376 (482)
Q Consensus 336 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 376 (482)
|+.+.+..+.|+...--.-+..+...++++.|.++...+..
T Consensus 49 fdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 49 REQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44444444443333322233334455666666666665554
No 387
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=21.88 E-value=4.2e+02 Score=23.48 Aligned_cols=128 Identities=12% Similarity=0.058 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HhhHHHHHHHHHhcCCH--HHHHHHHHHHHhCCCccChhhHHHH
Q 038748 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPD---IQTYNILFEFLVKGRKL--WEASGLFNEMVKNENVLNHENCRAA 389 (482)
Q Consensus 315 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~g~~--~~a~~~~~~~~~~~~~~~~~~~~~l 389 (482)
....+|.-|...|+.++|...++++.. |+ ......++......++. +.+..++..+...++-+.......+
T Consensus 14 ~~~~ii~EY~~~~D~~Ea~~~l~eL~~----p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls~~~~~~Gf 89 (364)
T 3l6a_A 14 LTETVVTEYLNSGNANEAVNGVREMRA----PKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATSDNFMQAF 89 (364)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTC----CGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCC----chhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_pred HHHHhcCCC----hHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 038748 390 VRVYMDSDD----PYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAE 446 (482)
Q Consensus 390 i~~~~~~~~----~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 446 (482)
...+....+ +..|..++.++...-+.-+..+...+...+...+-..-...++..+.+
T Consensus 90 ~~lle~l~Dl~iDiP~a~~~la~f~ar~i~~~~l~~~~l~~~l~~G~~~~l~l~vl~~~~k 150 (364)
T 3l6a_A 90 LNVLDQCPKLEVDIPLVKSYLAQFAARAIISELVSISELAQPLESGTHFPLFLLCLQQLAK 150 (364)
T ss_dssp HHHHHTHHHHHHHCTTHHHHHHHHHHHHHHTTSSCHHHHHHHHGGGTTTTHHHHHHHHHHH
T ss_pred HHHHhhChHhccccccHHHHHHHHHHHHHHcCCCCHHHHHHHhcccchHHHHHHHHHHHHH
No 388
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=21.69 E-value=2.1e+02 Score=22.75 Aligned_cols=19 Identities=16% Similarity=0.129 Sum_probs=9.9
Q ss_pred HHHHhhCCCcHHHHHHHHH
Q 038748 108 VDLLGKNCLFDAMWDAIKS 126 (482)
Q Consensus 108 i~~~~~~~~~~~a~~~~~~ 126 (482)
+...+..|+.+....+++.
T Consensus 10 l~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHh
Confidence 3444455565555555544
No 389
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=21.49 E-value=3.2e+02 Score=21.96 Aligned_cols=32 Identities=13% Similarity=-0.068 Sum_probs=13.7
Q ss_pred CCHHHHHHHHHHHHhCCCccChhhHHHHHHHH
Q 038748 362 RKLWEASGLFNEMVKNENVLNHENCRAAVRVY 393 (482)
Q Consensus 362 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 393 (482)
.+.+.|+-++.+|++.|-.|....-..++-+.
T Consensus 49 SDpDAALywLaRMl~~GEDp~~IaRRLvi~As 80 (213)
T 3ctd_A 49 SDPDATLYWLANMVEAGEDPNFIFRRLLISAC 80 (213)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 34444444444444444444333333333333
No 390
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=21.42 E-value=6.8e+02 Score=25.75 Aligned_cols=116 Identities=12% Similarity=0.008 Sum_probs=77.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCC----
Q 038748 200 IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNP---- 275 (482)
Q Consensus 200 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~---- 275 (482)
..++.... ++..+...|.++-|.++. .+-|.+...-..+..+++.. |++++|.+.|++.-. |+..
T Consensus 808 ~~~~~~~~--l~~~L~~~~~~~~a~eL~-------~~~~~t~~~~yv~gr~~L~~-ge~~~A~~~F~kAA~-gl~~~~~~ 876 (950)
T 4gq2_M 808 TENDLVTE--LVEKLFLFKQYNACMQLI-------GWLNSDPIAVYLKALIYLKS-KEAVKAVRCFKTTSL-VLYSHTSQ 876 (950)
T ss_dssp SSCCHHHH--HHHHHHHTTCHHHHHHHG-------GGCCSSHHHHHHHHHHHHHT-TCHHHHHHHHHTCCC-TTCSSCCS
T ss_pred CCCccHHH--HHHHHHHhcHHHHHHHHH-------hhcCCChHHHHHHHHHHHHc-CCHHHHHHHHHHHhh-hcccCccc
Confidence 34444333 667778888888765543 22333444445678888888 999999999987542 2111
Q ss_pred -------------------CHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCC----HHHHHHHHHHHHhcC
Q 038748 276 -------------------GMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD----THMYNMMISLYCYSN 327 (482)
Q Consensus 276 -------------------~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~ 327 (482)
...-|..++..+-+.+.++.+.++-+..+.... .-| ...|+.++++.+..|
T Consensus 877 ~~~~~~~~~ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~-~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 877 FAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKE-TDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp CGGGHHHHHHHHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC-SCCHHHHHHHHHHHHHHHHHHC
T ss_pred ccchhhhhhccCcccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcc-cCCccchHHHHHHHHHHHhhCC
Confidence 123578899999999999999988887763322 122 346888888877655
No 391
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=21.26 E-value=1.5e+02 Score=18.93 Aligned_cols=34 Identities=15% Similarity=0.314 Sum_probs=24.0
Q ss_pred CHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHcc
Q 038748 219 DVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG 254 (482)
Q Consensus 219 ~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 254 (482)
..++|.+.|.+|+.+.++.|. .+|...+..+...
T Consensus 13 t~eea~~~F~~LL~e~~V~~~--~tWe~~~~~i~~D 46 (71)
T 1uzc_A 13 TKEEAKQAFKELLKEKRVPSN--ASWEQAMKMIIND 46 (71)
T ss_dssp SHHHHHHHHHHHHHHTTCCTT--CCHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHHHcCcCCC--CCHHHHHHHHccC
Confidence 457888888888887777774 3676666655554
No 392
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=21.25 E-value=2.5e+02 Score=25.93 Aligned_cols=61 Identities=13% Similarity=0.052 Sum_probs=42.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCh--------hhHH-HHHHHHhcCCChHHHHHHHHHH
Q 038748 349 QTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNH--------ENCR-AAVRVYMDSDDPYVAIKFWKYM 409 (482)
Q Consensus 349 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--------~~~~-~li~~~~~~~~~~~a~~~~~~m 409 (482)
...+.++..|.+.++...+..+++.+...+..|+. .+|. .+.+.++..+++.+|.+.+...
T Consensus 177 ~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A 246 (455)
T 3t5v_B 177 YLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEA 246 (455)
T ss_dssp HHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHH
Confidence 34677788899999999999999888776653332 2333 2445566678888888776654
No 393
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=21.14 E-value=5.2e+02 Score=24.32 Aligned_cols=34 Identities=6% Similarity=-0.035 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCC
Q 038748 278 TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD 312 (482)
Q Consensus 278 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 312 (482)
.....+-..|.+.|++-.|-+++..+. ..+...+
T Consensus 218 ~~~dLLWryy~k~~~~~~AA~VL~~LA-~s~~~i~ 251 (525)
T 3i5p_A 218 KISNILWVYYSRRSKFFESAEILYRLA-TSNFDIT 251 (525)
T ss_dssp CHHHHHHTHHHHCCSHHHHHHHHHHHH-SSSSCCC
T ss_pred hHHHHHHHHHHHcccHHHHHHHHHHHH-hCCCCCC
Confidence 344556677778888888888888775 3344443
No 394
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=20.65 E-value=2.6e+02 Score=22.68 Aligned_cols=54 Identities=9% Similarity=-0.036 Sum_probs=26.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCH-------hhHHHHHHHHHh--cCCHHHHHHHHHHHH
Q 038748 322 LYCYSNETGAAMKLLDEMVYNGAFPDI-------QTYNILFEFLVK--GRKLWEASGLFNEMV 375 (482)
Q Consensus 322 ~~~~~~~~~~a~~~~~~m~~~g~~p~~-------~~~~~ll~~~~~--~g~~~~a~~~~~~~~ 375 (482)
..+..|+.+.+..+++.+.+.|..++. ...+.|..++.. .|+.+-+..+++.-.
T Consensus 8 ~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~ 70 (256)
T 2etb_A 8 SVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDK 70 (256)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCC
Confidence 344556666665666655555543332 233344333322 255555555554433
No 395
>1zla_K Latent nuclear antigen; latency associated nuclear antigen (LANA), kaposi'S sarcoma herpes virus (KSHV), nucleosome core particle, chromatin; 2.90A {Xenopus laevis}
Probab=20.37 E-value=50 Score=15.32 Aligned_cols=17 Identities=24% Similarity=0.274 Sum_probs=11.0
Q ss_pred CCccccccccCCCCCCC
Q 038748 1 MARNDKRRHHDDPSPDP 17 (482)
Q Consensus 1 ~~r~~~~~~~~~~~~~~ 17 (482)
||.+.-|+++.+....|
T Consensus 1 mappgmrlrsgrstgap 17 (26)
T 1zla_K 1 MAPPGMRLRSGRSTGAP 17 (26)
T ss_pred CCCCcceeecCcccCCc
Confidence 56777777776665444
No 396
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=20.31 E-value=3.5e+02 Score=21.90 Aligned_cols=17 Identities=12% Similarity=0.085 Sum_probs=8.1
Q ss_pred HHHhcCChHhHHHHHHH
Q 038748 179 AICRDGKTIDAWQFLRV 195 (482)
Q Consensus 179 ~~~~~g~~~~a~~~~~~ 195 (482)
.|.+.|.+++|.+++++
T Consensus 123 VCiek~~f~kA~eiLkr 139 (235)
T 3bu8_A 123 ICIKNKEFEKASKILKK 139 (235)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHhcchHHHHHHHHH
Confidence 34444445555444444
No 397
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=20.29 E-value=1.9e+02 Score=21.34 Aligned_cols=118 Identities=8% Similarity=-0.050 Sum_probs=55.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhh---HHHHHHHHhcC
Q 038748 320 ISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHEN---CRAAVRVYMDS 396 (482)
Q Consensus 320 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~---~~~li~~~~~~ 396 (482)
+...++.|+.+.+..+++.-...-...+...++.+. ..+..|+.+ +++.+.+.|..++... .+.+ ...+..
T Consensus 12 l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~-~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~ 85 (165)
T 3twr_A 12 LLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLH-FAAGYNRVS----VVEYLLQHGADVHAKDKGGLVPL-HNACSY 85 (165)
T ss_dssp HHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHH-HHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHH-HHHHHT
T ss_pred HHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHH-HHHHcChHH----HHHHHHhcCCCCCccCCCCCCHH-HHHHHc
Confidence 334556788777666654311110111222223343 345667754 4445555555544322 2233 334455
Q ss_pred CChHHHHHHHHHHHHcCCCCChh---hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 038748 397 DDPYVAIKFWKYMIENHCSDLSE---TGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVT 452 (482)
Q Consensus 397 ~~~~~a~~~~~~m~~~~~~p~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 452 (482)
|+.+ +.+.+.+.|..++.. -++.+.. .+..|+.+- .+.+.+.|..++
T Consensus 86 ~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~-A~~~~~~~~----v~~Ll~~ga~~~ 135 (165)
T 3twr_A 86 GHYE----VAELLVKHGAVVNVADLWKFTPLHE-AAAKGKYEI----CKLLLQHGADPT 135 (165)
T ss_dssp TCHH----HHHHHHHTTCCTTCCCTTCCCHHHH-HHHTTCHHH----HHHHHHTTCCTT
T ss_pred CcHH----HHHHHHhCCCCCCCcCCCCCCHHHH-HHHcCCHHH----HHHHHHcCCCCc
Confidence 6655 445555666655432 2233433 345566553 344445565554
No 398
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=20.13 E-value=1.7e+02 Score=20.92 Aligned_cols=38 Identities=8% Similarity=-0.056 Sum_probs=18.0
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 038748 267 RMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMV 304 (482)
Q Consensus 267 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 304 (482)
.+....+.|+...-..-+..+...++++.|.++...+.
T Consensus 51 kLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~ 88 (118)
T 2yru_A 51 QWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLM 88 (118)
T ss_dssp HHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33333443333322223333445566666666666554
Done!