BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038749
(934 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P69735|RB3GP_RAT Rab3 GTPase-activating protein catalytic subunit (Fragments)
OS=Rattus norvegicus GN=Rab3gap1 PE=1 SV=2
Length = 775
Score = 163 bits (412), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 131/424 (30%), Positives = 201/424 (47%), Gaps = 53/424 (12%)
Query: 402 FCLHSLWFGNCNIRAIAVLWIEFVREIRWYWEESQPLPKMPVNGSIDLSTCLINQKLQML 461
CL + F + ++ +A LW EFV E+R+ WE + +P + +G DL CL++QKLQML
Sbjct: 255 LCLCMINFYHGGLKGVAHLWQEFVLEMRFRWENNFLIPGL-ASGPPDLRCCLLHQKLQML 313
Query: 462 AICIE--KMRELNEEFQDCIGSNDPSPADIKEDGQAVDGSNNLRIPDE-------NFDRN 512
CIE K R+ ++ PAD + G + G ++LR ++ ++D
Sbjct: 314 NCCIERKKARDEGKKTSPSDSMTKAYPADAGKAGGQL-GLDHLRDTEKEKGEAGKSWDSW 372
Query: 513 CDSQ-------LTADGLRESGNAIQRYTMK--PQDVASIDKKPSDFVRRGSAGKVGSMML 563
DS+ A+ LR +G Q T K P+D+A + KP G + G + L
Sbjct: 373 SDSEEEFFECLSDAEDLRGNG---QESTKKGGPKDMAPL--KPE-----GRLHQHGKLTL 422
Query: 564 LKSYQSMHAPFTQDAPLMTEDMHEERLHAVEAFSNSFE---FSAQLERDILLSDMSAFKA 620
L++ + ++ P TQ+ MTED+ EE+ + S E A+++ LLSDM +FKA
Sbjct: 423 LRNGEPLYIPVTQEPAPMTEDLLEEQSEVLAKLGTSAEGAHLRARMQSACLLSDMESFKA 482
Query: 621 ANPDAVFEDFIRWHSPGDWLNDDGKENGPSGIPAVEDLKENWPPQGRLSQRMSEHGNLWR 680
ANP EDF+RW+SP D++ ++ V D K N +G LS RM N+W
Sbjct: 483 ANPGCCLEDFVRWYSPRDYIEEE-----------VTDEKGNVVLKGELSARMKIPSNMWV 531
Query: 681 KIWNEAPAVSASEQKPLLDPNREGEKILHYLETLRPNDLLEQMV-CTAFRASADTLNQTH 739
+ W A V A Q+ L D RE EK+LHYL +P DL ++ C A +
Sbjct: 532 EAWETAKPVPARRQRRLFDDTREAEKVLHYLAMQKPADLARHLLPCVIHAAVLKVKEEES 591
Query: 740 FGALKQMAMKMDQLYITMSSVLKPLQANNLSGDSETIEDLRRLCVVFEHVEKLLTVAASL 799
+ + + Q+ S VL+ S + L + + VE ++ A SL
Sbjct: 592 LENIPSVKKIIKQIIAHSSKVLR--------FPSPEDKKLEEIILQITTVEAIIARARSL 643
Query: 800 HRKF 803
KF
Sbjct: 644 KAKF 647
>sp|Q642R9|RB3GP_XENLA Rab3 GTPase-activating protein catalytic subunit OS=Xenopus laevis
GN=rab3gap1 PE=2 SV=1
Length = 978
Score = 160 bits (406), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 127/417 (30%), Positives = 193/417 (46%), Gaps = 42/417 (10%)
Query: 402 FCLHSLWFGNCNIRAIAVLWIEFVREIRWYWEESQPLPKMPVNGSIDLSTCLINQKLQML 461
CL + F + ++ +A LW EFV E+R+ WE + +P + NGS DL CL++QKLQML
Sbjct: 463 LCLCMVNFYHGGVKGVAHLWQEFVLEMRYRWENNFLIPGL-ANGSPDLKCCLLHQKLQML 521
Query: 462 AICIEKMRELNEEFQ------------DCIGSNDPSPADIKEDGQAVDGSNNLRIPDENF 509
C+E+ + +E + + S+ SP + + V S + E
Sbjct: 522 NCCLERKKARDEGKKGNPLYSSSESSVNKTASDLLSPVEADKSKYEVAKSWDSWSDSEEE 581
Query: 510 DRNCDSQLTADGLRESGNAIQRYTMKPQDVASIDKKPSDFVRRGSAGKVGSMMLLKSYQS 569
C S + L+ESG R K + + KP G + G++MLL S +
Sbjct: 582 FFECHSD--TEELKESGQESAR-KAKEETKENPSPKP-----EGRLHQSGNLMLLNSGEP 633
Query: 570 MHAPFTQDAPLMTEDMHEERLHAVEAFSNSFE---FSAQLERDILLSDMSAFKAANPDAV 626
++ P TQD MT+D+ EE+ + S E A+++ LLSDM +FKAANP
Sbjct: 634 LYIPVTQDPAPMTDDLLEEQSEVLAKLGTSAEGAHLRARMQSACLLSDMESFKAANPGCC 693
Query: 627 FEDFIRWHSPGDWLNDDGKENGPSGIPAVEDLKENWPPQGRLSQRMSEHGNLWRKIWNEA 686
EDF+RW+SP D++ ++ V D K N +G LS RM N+W + W A
Sbjct: 694 LEDFVRWYSPRDYIEEE-----------VMDDKGNKIFKGELSARMKIPNNMWVEAWETA 742
Query: 687 PAVSASEQKPLLDPNREGEKILHYLETLRPNDLLEQMVCTAFRASADTLNQTHFGALKQM 746
+ A Q+ L D +E EK+LHYL +P DL ++ A+ L +
Sbjct: 743 KPIPARRQRRLFDDTKEAEKVLHYLAVQKPADLTRHLLPCVIHAALLKLKEEEAAEDIPS 802
Query: 747 AMKMDQLYITMSSVLKPLQANNLSGDSETIEDLRRLCVVFEHVEKLLTVAASLHRKF 803
K + I+ SS + S D + +ED + +VE + A SL KF
Sbjct: 803 GRKAIKQIISHSSKVLRFP----SPDDKKLED---VISQISNVEAAIARARSLKAKF 852
Score = 84.7 bits (208), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 71/242 (29%), Positives = 113/242 (46%), Gaps = 33/242 (13%)
Query: 10 SVDDEAEEEEFERFDDFTLASSWERFISEIEAICRQW--LADGSKNLLEKGAIQLDSSKN 67
+ D + E E FE DFT AS WERFIS++E + +W + + S EKG + +
Sbjct: 2 AADSDPESEVFE-ITDFTTASEWERFISKVEEVLTEWKLIGETSNKPPEKG----EYTSG 56
Query: 68 LYKAKSELKYFMK-SYCMEYYFEIKKS---------GEFTVWDC-------------TLH 104
+++ K E F + + +++ ++KS GE ++ C H
Sbjct: 57 VWEEKGEEVLFADFRFSIRHHYLVQKSSEKEEKEDTGEDSIPVCMQDLLCTNNDFPPVAH 116
Query: 105 DLQLCFGVKEFLVIAPQSASGVVLDAPEASKLLSAVAIALSNCSSLWPAFVPVHDPSRNA 164
L +G++EF+VI+P A+ V+ + + LLS+V+IAL N P FV VH R
Sbjct: 117 CLVRWYGLREFVVISP-GANDAVISESKCNLLLSSVSIALGNTGCQVPLFVQVHQKWRKL 175
Query: 165 FIGIQNMGTIFTRRFEADRICSQVPVKLMHLEGLYELFVSKFAYSTLDFSMHVFKVRFTM 224
++G + G FE + +VP + HL GL ++F SK +RFT
Sbjct: 176 YVG-ECRGPGVRTDFEMVHL-RKVPNQYTHLSGLLDIFKSKIGCPLTALPPVNIAIRFTY 233
Query: 225 KL 226
L
Sbjct: 234 VL 235
>sp|Q80UJ7|RB3GP_MOUSE Rab3 GTPase-activating protein catalytic subunit OS=Mus musculus
GN=Rab3gap1 PE=2 SV=4
Length = 981
Score = 159 bits (403), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 131/454 (28%), Positives = 207/454 (45%), Gaps = 59/454 (12%)
Query: 376 LPDFAKGQHRSSRSIKGARLESLFAQF--CLHSLWFGNCNIRAIAVLWIEFVREIRWYWE 433
+P G + K A +SL + CL + F + ++ +A LW EFV E+R+ WE
Sbjct: 433 IPAPEAGDYTLYNQFKSAPSDSLTYKLALCLCMINFYHGGLKGVAHLWQEFVLEMRFRWE 492
Query: 434 ESQPLPKMPVNGSIDLSTCLINQKLQMLAICIEKMRELNEEFQDCIGSNDPS--PADIKE 491
+ +P + +GS DL CL++QKLQML CIE+ + +E + + + S P D +
Sbjct: 493 NNFLIPGL-ASGSPDLRCCLLHQKLQMLNCCIERKKARDEGKKTSLSDSTTSAYPGDAGK 551
Query: 492 DGQAVDGSNNLR------------------IPDENFDRNCDSQLTADGLRESGNAIQRYT 533
G + G ++LR +E F+ D++ +ESG
Sbjct: 552 TGGQL-GLDHLRDTEKEKGEVGKSWDSWSDSEEEFFECLSDTEDLKGNGQESGK-----K 605
Query: 534 MKPQDVASIDKKPSDFVRRGSAGKVGSMMLLKSYQSMHAPFTQDAPLMTEDMHEERLHAV 593
P+++A++ KP G + G + LL + + ++ P TQ+ MTED+ EE+ +
Sbjct: 606 GGPKEMANL--KP-----EGRLHQHGKLTLLHNGEPLYIPVTQEPAPMTEDLLEEQSEVL 658
Query: 594 EAFSNSFE---FSAQLERDILLSDMSAFKAANPDAVFEDFIRWHSPGDWLNDDGKENGPS 650
S E A+++ LLSDM +FKAANP EDF+RW+SP D++ ++
Sbjct: 659 AKLGTSAEGAHLRARMQSACLLSDMESFKAANPGCFLEDFVRWYSPRDYIEEE------- 711
Query: 651 GIPAVEDLKENWPPQGRLSQRMSEHGNLWRKIWNEAPAVSASEQKPLLDPNREGEKILHY 710
V D K N +G LS RM N+W + W A V A Q+ L D RE EK+LHY
Sbjct: 712 ----VTDEKGNVVLKGELSARMKIPSNMWVEAWETAKPVPARRQRRLFDDTREAEKVLHY 767
Query: 711 LETLRPNDLLEQMV-CTAFRASADTLNQTHFGALKQMAMKMDQLYITMSSVLKPLQANNL 769
L +P DL ++ C A + + + + Q+ S VL +
Sbjct: 768 LAMQKPADLARHLLPCVIHAAVLKVKEEESLENIPSVKKIIKQIIAHSSKVLHFPNPED- 826
Query: 770 SGDSETIEDLRRLCVVFEHVEKLLTVAASLHRKF 803
+ L + + VE ++ A SL KF
Sbjct: 827 -------KKLEEIILQITTVEAIIARARSLKAKF 853
Score = 84.0 bits (206), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 70/241 (29%), Positives = 107/241 (44%), Gaps = 30/241 (12%)
Query: 10 SVDDEAEEEEFERFDDFTLASSWERFISEIEAICRQWLADGSK--NLLEKGAIQLDSSKN 67
+ D E E E FE DFT AS WERFIS++E + W G LEKG +S
Sbjct: 2 AADSEPESEVFE-ITDFTTASEWERFISKVEEVLNDWKLIGPSLGKPLEKGIF---TSGT 57
Query: 68 LYKAKSELKYFMKSYCMEYYFEIKKSGEFTVWDCTLHDL-------QLC----------- 109
+ E+ + + + +++ +++S + D L D LC
Sbjct: 58 WEERSDEISFADFRFSVTHHYLVQESPDKERKDEELEDAIPQSMQDLLCMNNDFPPRAHC 117
Query: 110 ----FGVKEFLVIAPQSASGVVLDAPEASKLLSAVAIALSNCSSLWPAFVPVHDPSRNAF 165
+G++EF+VIAP + S VL + + LLS+++IAL N P FV +H R +
Sbjct: 118 LVRWYGLREFVVIAPAAHSDAVLSESKCNLLLSSISIALGNTGCQVPLFVQIHHKWRRMY 177
Query: 166 IGIQNMGTIFTRRFEADRICSQVPVKLMHLEGLYELFVSKFAYSTLDFSMHVFKVRFTMK 225
+G + G FE + +VP + HL GL ++F SK +R T
Sbjct: 178 MG-ECQGPGVRTDFEMVHL-RKVPSQYTHLSGLLDIFKSKIGCPLTPLPPVSIAIRLTYV 235
Query: 226 L 226
L
Sbjct: 236 L 236
>sp|Q15042|RB3GP_HUMAN Rab3 GTPase-activating protein catalytic subunit OS=Homo sapiens
GN=RAB3GAP1 PE=1 SV=3
Length = 981
Score = 151 bits (382), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 124/421 (29%), Positives = 196/421 (46%), Gaps = 48/421 (11%)
Query: 402 FCLHSLWFGNCNIRAIAVLWIEFVREIRWYWEESQPLPKMPVNGSIDLSTCLINQKLQML 461
CL + F + ++ +A LW EFV E+R+ WE + +P + +G DL CL++QKLQML
Sbjct: 462 LCLCMINFYHGGLKGVAHLWQEFVLEMRFRWENNFLIPGL-ASGPPDLRCCLLHQKLQML 520
Query: 462 AICIEKMRELNEEFQDCIGS-NDPSPADIKEDGQAVDGSNNLRIPDE-------NFDRNC 513
CIE+ + +E + + P D + G + +NL+ D+ ++D
Sbjct: 521 NCCIERKKARDEGKKTSASDVTNIYPGDAGKAGDQL-VPDNLKETDKEKGEVGKSWDSWS 579
Query: 514 DSQ-----LTADGLRESGNAIQRYTMK--PQDVASIDKKPSDFVRRGSAGKVGSMMLLKS 566
DS+ +D GN Q K P+++A++ +P G + G + LL +
Sbjct: 580 DSEEEFFECLSDTEELKGNG-QESGKKGGPKEMANL--RP-----EGRLYQHGKLTLLHN 631
Query: 567 YQSMHAPFTQDAPLMTEDMHEERLHAVEAFSNSFE---FSAQLERDILLSDMSAFKAANP 623
+ ++ P TQ+ MTED+ EE+ + S E A+++ LLSDM +FKAANP
Sbjct: 632 GEPLYIPVTQEPAPMTEDLLEEQSEVLAKLGTSAEGAHLRARMQSACLLSDMESFKAANP 691
Query: 624 DAVFEDFIRWHSPGDWLNDDGKENGPSGIPAVEDLKENWPPQGRLSQRMSEHGNLWRKIW 683
EDF+RW+SP D++ ++ V D K N +G LS RM N+W + W
Sbjct: 692 GCSLEDFVRWYSPRDYIEEE-----------VIDEKGNVVLKGELSARMKIPSNMWVEAW 740
Query: 684 NEAPAVSASEQKPLLDPNREGEKILHYLETLRPNDLLEQMV-CTAFRASADTLNQTHFGA 742
A + A Q+ L D RE EK+LHYL +P DL ++ C A +
Sbjct: 741 ETAKPIPARRQRRLFDDTREAEKVLHYLAIQKPADLARHLLPCVIHAAVLKVKEEESLEN 800
Query: 743 LKQMAMKMDQLYITMSSVLKPLQANNLSGDSETIEDLRRLCVVFEHVEKLLTVAASLHRK 802
+ + + Q+ S VL + + L + +VE L+ A SL K
Sbjct: 801 ISSVKKIIKQIISHSSKVLHFPNPED--------KKLEEIIHQITNVEALIARARSLKAK 852
Query: 803 F 803
F
Sbjct: 853 F 853
Score = 87.4 bits (215), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 70/241 (29%), Positives = 108/241 (44%), Gaps = 30/241 (12%)
Query: 10 SVDDEAEEEEFERFDDFTLASSWERFISEIEAICRQW--LADGSKNLLEKGAIQLDSSKN 67
+ D E E E FE DFT AS WERFIS++E + W + + LEKG +S
Sbjct: 2 AADSEPESEVFE-ITDFTTASEWERFISKVEEVLNDWKLIGNSLGKPLEKGIF---TSGT 57
Query: 68 LYKAKSELKYFMKSYCMEYYFEIKKSGEFTVWDCTLHD---------------------- 105
+ E+ + + + +++ +++S + D L D
Sbjct: 58 WEEKSDEISFADFKFSVTHHYLVQESTDKEGKDELLEDVVPQSMQDLLGMNNDFPPRAHC 117
Query: 106 LQLCFGVKEFLVIAPQSASGVVLDAPEASKLLSAVAIALSNCSSLWPAFVPVHDPSRNAF 165
L +G++EF+VIAP + S VL + + LLS+V+IAL N P FV +H R +
Sbjct: 118 LVRWYGLREFVVIAPAAHSDAVLSESKCNLLLSSVSIALGNTGCQVPLFVQIHHKWRRMY 177
Query: 166 IGIQNMGTIFTRRFEADRICSQVPVKLMHLEGLYELFVSKFAYSTLDFSMHVFKVRFTMK 225
+G + G FE + +VP + HL GL ++F SK +RFT
Sbjct: 178 VG-ECQGPGVRTDFEMVHL-RKVPNQYTHLSGLLDIFKSKIGCPLTPLPPVSIAIRFTYV 235
Query: 226 L 226
L
Sbjct: 236 L 236
>sp|Q6NUV0|RB3GP_DANRE Rab3 GTPase-activating protein catalytic subunit OS=Danio rerio
GN=rab3gap1 PE=2 SV=2
Length = 969
Score = 149 bits (375), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 117/409 (28%), Positives = 193/409 (47%), Gaps = 37/409 (9%)
Query: 402 FCLHSLWFGNCNIRAIAVLWIEFVREIRWYWEESQPLPKMPVNGSIDLSTCLINQKLQML 461
C+ + F + +RA+A LW EFV E+R+ WE + + + +G DL CL++QKLQML
Sbjct: 463 LCICMVNFHHGGVRAVAHLWQEFVLEMRYRWENNCLIYGL-ASGPPDLRCCLLHQKLQML 521
Query: 462 AICIE--KMRELNEEFQDCIGSNDPSPADIKEDGQAVDGSNNLRIPDENFDRNCDSQLTA 519
CIE K R+ ++ G+ D S +G +G+ +++D DS+
Sbjct: 522 NCCIERKKARDDGKKSSSSDGARDRSRG--APEGAGPEGAGPAEAAGKSWDSWSDSE--- 576
Query: 520 DGLRESGNAIQRYTMKPQDVASIDK-KPSDFVRRGSAGKVGSMMLLKSYQSMHAPFTQDA 578
D E + + ++ + + KP G G+ LL + + ++ P TQ+
Sbjct: 577 DEFFECVSDTEEMKEDKEEAENRSRSKP-----EGRLQPHGTHTLLNTQEPLYIPITQEP 631
Query: 579 PLMTEDMHEERLHAVEAFSNSFE---FSAQLERDILLSDMSAFKAANPDAVFEDFIRWHS 635
MTED+ EE+ + S E A+++ LLSDM +FKAANP DF+RW+S
Sbjct: 632 APMTEDLLEEQSEVLAKLGTSAEGAHLRARMQSACLLSDMESFKAANPGCTLLDFVRWYS 691
Query: 636 PGDWLNDDGKENGPSGIPAVEDLKENWPPQGRLSQRMSEHGNLWRKIWNEAPAVSASEQK 695
P D++ + V D +G LS RM GN+W + W A A A QK
Sbjct: 692 PRDYVEEQ-----------VTDADGRVEVRGELSARMKIPGNMWVEAWETARATPARRQK 740
Query: 696 PLLDPNREGEKILHYLETLRPNDLLEQMVCTAFRASADTLNQTHFGA-LKQMAMKMDQLY 754
L D +E EK+LHYL +P++L ++ A+ + + L + + Q+
Sbjct: 741 RLFDDTKEAEKVLHYLALQKPSELTRHLLPCVLHAALLKIKEEESAEDLPSVRSSLQQIS 800
Query: 755 ITMSSVLKPLQANNLSGDSETIEDLRRLCVVFEHVEKLLTVAASLHRKF 803
+ S +L+ + + + + +ED+ + VE ++ A SL KF
Sbjct: 801 SSASKILR-----HPNPEFKKLEDVISQLMA---VEAVIARARSLKAKF 841
Score = 83.6 bits (205), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 75/264 (28%), Positives = 116/264 (43%), Gaps = 38/264 (14%)
Query: 10 SVDDEAEEEEFERFDDFTLASSWERFISEIEAICRQWLADGSK--NLLEKGAIQLDSSKN 67
+ D + E E FE DFT AS WERFIS +E + W GS+ LEKG +S
Sbjct: 2 AADSDPESEVFE-ITDFTTASEWERFISRVEEVLNDWKLIGSRVGKPLEKGEY---TSGT 57
Query: 68 LYKAKSELKYFMKSYCMEYYFEIKKSGEFT--------VWDCTLHDLQLC---------- 109
++ E+ + + + +++ ++S E + + DL LC
Sbjct: 58 WEESSQEISFADFKFSITHHYLKQESAENDGRDELEEDAYPLAMQDL-LCINNDFPPRAH 116
Query: 110 -----FGVKEFLVIAPQSASGVVLDAPEASKLLSAVAIALSNCSSLWPAFVPVHDPSRNA 164
FGV+EF+VI+P + ++ + S LLS+V+IAL+N P FV + R
Sbjct: 117 CLVRWFGVREFVVISPGANCEAIISESKCSLLLSSVSIALANTGCQVPLFVQIQQKHRKM 176
Query: 165 FIGIQNMGTIFTRRFEADRICSQVPVKLMHLEGLYELFVSKFAYSTLDFSMHVFKVRFTM 224
F G + G FE + +VP + HL GL ++F +K +RFT
Sbjct: 177 FSG-ECQGPGVRSDFEMVHL-RRVPSQYNHLSGLLDIFKNKIGCPLTPLPPINISIRFTY 234
Query: 225 KL------TYKTLPYDDDDDMRGE 242
L ++ P D D + GE
Sbjct: 235 VLQDWQQCSWPQQPPDFDALLAGE 258
>sp|Q9VQ26|RB3GP_DROME Rab3 GTPase-activating protein catalytic subunit OS=Drosophila
melanogaster GN=CG31935 PE=1 SV=2
Length = 916
Score = 144 bits (364), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 165/676 (24%), Positives = 267/676 (39%), Gaps = 122/676 (18%)
Query: 103 LHDLQLCFGVKEFLVIAPQSAS-GVVLDAPEASKLLSAVAIALSNCSSLWPAFVPVHDPS 161
LH L +G++ F+V+ P + + + E + LSAVA+ + SL P FV ++DP
Sbjct: 121 LHILARIYGLRRFIVLHPVNPTLNYMRSTSEFNFFLSAVAVVSAEVQSLVPIFVQIYDPK 180
Query: 162 RNAFIGIQNMGTIFTRRFEADRICSQVPVKLMHLEGLYELFVSKFAYS---------TLD 212
N + G+ + F + + P + L GL LF K S
Sbjct: 181 WNYYTGVA-LAPALRTNFRLIGL-EKAPPECRFLMGLLTLFREKVPTSYTQAAMISVCTT 238
Query: 213 FSMHVFKVRFTMKLTYKTLPYDDDDDMRGEDVENTEPTDFPGGESGTRTQWDDDCPWSEW 272
+++ ++R M + + +D + GE V + E F C
Sbjct: 239 YALDTMRIRMPMYVPFDHGLSSEDIVVDGE-VSHLEVQQF--------------CALPHG 283
Query: 273 YSAEDLVKGFGLVVIWSEKTVEGSFEMAEIENSSPHEAEKWILFPNICFFSLM------H 326
Y E + + LV W E + +F+ + + P +A ++ ++ S + +
Sbjct: 284 YKPESRTEIY-LVYTWPELSEHVAFDSEQRSDFVPAKAPLGKIYLSVEASSYLSCCLRDY 342
Query: 327 LKMSFEAQFMEDFVSVENPGSDNLKSSMVIPSPTIIDRVLKDLFHEGVQLPDFAKGQHRS 386
++ + +E FV G+ + + P I + L +LP A R
Sbjct: 343 QSVAEVTRSLESFVGRNFSGTSSGAEAASNPLDRITEHKLTKRRERSFELPSQAGLTKRL 402
Query: 387 SRSIKGARLESLFAQF------------------------------------CLHSLWFG 410
+ + L L A C S
Sbjct: 403 PGPMTESELSELLAYLFPDMHPEMALFPYAKKNFTDKFDPMRIKSAVPDSLVCRLSCLLA 462
Query: 411 NCN-----IRAIAVLWIEFVREIRWYWEESQPLPKMPVNGSIDLSTCLINQKLQMLAICI 465
C+ + +A +W F R++R W+ S +P + G D TCL++QKLQML +C+
Sbjct: 463 TCHAHLGSVEGMAQVWAAFTRQLRLLWDNSLMVPGISA-GFPDTRTCLLHQKLQMLNVCV 521
Query: 466 EK--MRELNEEFQDCIGSNDPSPADIKEDGQAVDGSNNLRIPDENFDRNCDSQLTADGLR 523
E+ RE N S S + G+A DE +CD LTA
Sbjct: 522 ERRVQREAN--------SKRKSEGMV---GKASSEEEEDEDDDEGEFFDCDD-LTAG--- 566
Query: 524 ESGNAIQRYTMKPQDVASIDKKPSDFVRRGSAGKVGSMMLLKSYQSMHAPFTQDAPLMTE 583
+G+ + A + KP +RR + + +L + + ++ P TQ+ TE
Sbjct: 567 -AGSPTK---------AVLSLKPEGRLRRLNNER----LLEEPDEYLYIPDTQEPVPKTE 612
Query: 584 DMHEERLHAVEAFSNSFEFSAQLERDILLSDMSAFKAANPDAVFEDFIRWHSPGDWLNDD 643
D ++ + + Q+ LLSDM AFKAANP + EDFIRW+SP DW
Sbjct: 613 DQLQDDAEVMLKLGPGSGLTTQMMCTSLLSDMEAFKAANPRGIMEDFIRWYSPKDW---- 668
Query: 644 GKENGPSGIPAVEDLKENWPPQGRLSQRMSEHGNLWRKIWNEAPAVSASEQKPLLDPNRE 703
E E + +LS RM+ GN W+K+W +A AV S QK L D E
Sbjct: 669 -----------EEVTDELGQVKHQLSIRMTTEGNTWQKVWEQAQAVPVSRQKRLFDDTNE 717
Query: 704 GEKILHYLETLRPNDL 719
K+LHYLET + +++
Sbjct: 718 ALKVLHYLETRKMHEI 733
>sp|Q93538|RB3GP_CAEEL Rab3 GTPase-activating protein catalytic subunit OS=Caenorhabditis
elegans GN=rbg-1 PE=3 SV=1
Length = 915
Score = 91.7 bits (226), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 84/323 (26%), Positives = 137/323 (42%), Gaps = 73/323 (22%)
Query: 415 RAIAVLWIEFVREIRWYWEESQPLPKMPVNGSIDLSTCLINQKLQMLAICIEKMRELNEE 474
RA LW+EF+ ++R +E+ + + K V ID C +QK+QML +CI+ ++ +
Sbjct: 484 RAEPQLWVEFLLKLREKYEKMETVEK--VYNGIDHLQCSFSQKMQMLQLCIDARQKRH-- 539
Query: 475 FQDCIGSNDPSPADIKEDGQAVDGSNNLRIPDENFDRNCDSQLTADGLRESGNAIQRYTM 534
+ +D +++ DE FD N A+ + E N R +
Sbjct: 540 -------------------RMLDSAHSANNSDEFFDAN--ESFNAETILEPNNE-GRLKL 577
Query: 535 KPQDVASIDKKPSDFVRRGSAGKVGSMMLLKSYQSMHAPFTQDAPLMTEDMHEERLHAVE 594
++ I P M+ P TQDA +T++M + R +
Sbjct: 578 FGLNLVEIPDVP-----------------------MYIPVTQDACPLTDEMIDARNEHL- 613
Query: 595 AFSNSFEFSAQLERDILLSDMSAFKAANPDAVFEDFIRWHSPGDWLNDDGKENGPSGIPA 654
FS E L+ +++ SDM +FKAAN AVF DF+RWHSP D+ D K N
Sbjct: 614 -FSLDEEDRVHLQMELVKSDMQSFKAANAGAVFADFLRWHSPKDY---DEKTNT------ 663
Query: 655 VEDLKENWPPQGRLSQRMSEHGNLWRKIWNEAPAVSASEQKPLLDPNREGEKILHYLETL 714
+S+RM N+W + W A + + Q + + + E+IL
Sbjct: 664 -------------ISERMLISNNVWVRSWEAALPIPVANQARIFNDTKIAEEILEIFNNA 710
Query: 715 RPNDLLEQMVCTAFRASADTLNQ 737
+ + E M T F A+ + L +
Sbjct: 711 TLDQVREWMKPTVFAATLERLTE 733
>sp|Q54QG5|Y3893_DICDI Probable E3 ubiquitin-protein ligase DDB_G0283893 OS=Dictyostelium
discoideum GN=DDB_G0283893 PE=3 SV=2
Length = 5875
Score = 35.4 bits (80), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 60/123 (48%), Gaps = 13/123 (10%)
Query: 684 NEAPAVSASEQKPLLDPNREGEKILHYLETLRPNDLLEQMVCTAFRASAD--TLNQTHFG 741
N +PA++AS P L+ EK+ + TL D+L + AF D L + +F
Sbjct: 1839 NSSPALTASSSPPSLEFVDWDEKVTSFALTLF--DVLLSSLNNAFTVWIDQPKLLKGYFE 1896
Query: 742 ALKQMAMKMDQ---LYITMSSVLKPLQANNLSGDSETIEDLRRLCVVFEHVEKLLTVAAS 798
L+ +AM Q L+ +S++ PL N TI+ L L ++ E +E +L ++ S
Sbjct: 1897 LLQFIAMGQHQLLKLFNEISNLSSPLLTN------PTIDQLESLNLLVEFIENILDLSKS 1950
Query: 799 LHR 801
L +
Sbjct: 1951 LKK 1953
>sp|Q7S4D8|COG6_NEUCR Conserved oligomeric Golgi complex subunit 6 OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=cog-6 PE=3 SV=2
Length = 713
Score = 34.3 bits (77), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Query: 734 TLNQTHFGALKQMAMKMDQLY----ITMSSVLKPLQANNLSGDSETIEDL-RRLCVVFEH 788
TL + AL+Q + K+D I + LK LQ + L+ S IE+ R CV FEH
Sbjct: 611 TLEEVQPEALRQSSQKLDDFLPSALIDATEKLKNLQDSKLA--SSVIEEAAERFCVDFEH 668
Query: 789 VEKLLTVAASLHRK 802
VE++L A L +
Sbjct: 669 VEEMLLSADELEEQ 682
>sp|Q76N32|CEP68_HUMAN Centrosomal protein of 68 kDa OS=Homo sapiens GN=CEP68 PE=1 SV=2
Length = 757
Score = 33.5 bits (75), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 9/93 (9%)
Query: 670 QRMSEHGNLWRKIWNEAPAVSASEQKPLLDPNREGEKILHYLETLRPNDLLEQMVCTAFR 729
+R+S W + ++ S PL +PN+E E +L Y LRP L + + + R
Sbjct: 265 RRLSFQAEYWACVLPDSLPPSPDRHSPLWNPNKEYEDLLDYTYPLRPGPQLPKHLDS--R 322
Query: 730 ASADTLNQTHFGALKQMAMKMDQLYITMSSVLK 762
AD + L+ + +D ++ +S LK
Sbjct: 323 VPADPV-------LQDSGVDLDSFSVSPASTLK 348
>sp|Q5RCQ2|CEP68_PONAB Centrosomal protein of 68 kDa OS=Pongo abelii GN=CEP68 PE=2 SV=1
Length = 751
Score = 33.5 bits (75), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 9/93 (9%)
Query: 670 QRMSEHGNLWRKIWNEAPAVSASEQKPLLDPNREGEKILHYLETLRPNDLLEQMVCTAFR 729
+R+S W + ++ S PL +PN+E E +L Y LRP L + + + R
Sbjct: 259 RRLSFQAEYWACVLPDSLPPSPDRHSPLWNPNKEYEDLLDYTYPLRPGPQLPKHLDS--R 316
Query: 730 ASADTLNQTHFGALKQMAMKMDQLYITMSSVLK 762
AD + L+ + +D ++ +S LK
Sbjct: 317 VPADPV-------LQDSGVDLDSFSVSPASTLK 342
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.133 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 356,047,938
Number of Sequences: 539616
Number of extensions: 15459936
Number of successful extensions: 34928
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 34872
Number of HSP's gapped (non-prelim): 29
length of query: 934
length of database: 191,569,459
effective HSP length: 127
effective length of query: 807
effective length of database: 123,038,227
effective search space: 99291849189
effective search space used: 99291849189
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 66 (30.0 bits)