Query 038749
Match_columns 934
No_of_seqs 139 out of 157
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 02:55:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038749.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038749hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2390 Uncharacterized conser 100.0 1E-106 3E-111 903.9 29.4 624 153-932 1-667 (669)
2 PF13890 Rab3-GTPase_cat: Rab3 100.0 1.5E-64 3.3E-69 502.8 14.3 157 546-713 5-164 (164)
3 PF04799 Fzo_mitofusin: fzo-li 58.4 12 0.00027 39.0 4.1 66 745-817 102-167 (171)
4 COG4026 Uncharacterized protei 38.0 2.1E+02 0.0046 31.3 9.5 106 707-820 96-207 (290)
5 PF11855 DUF3375: Protein of u 23.0 3.1E+02 0.0066 33.1 8.7 69 692-761 90-164 (478)
6 PF10212 TTKRSYEDQ: Predicted 21.3 2.3E+02 0.0051 34.5 7.1 23 773-795 128-150 (518)
7 PF07425 Pardaxin: Pardaxin; 20.9 63 0.0014 24.3 1.5 24 127-150 9-32 (33)
8 PRK13266 Thf1-like protein; Re 14.1 1.1E+03 0.025 25.9 9.6 105 702-815 93-210 (225)
9 PF08700 Vps51: Vps51/Vps67; 12.0 3.3E+02 0.0072 24.4 4.2 12 757-768 38-49 (87)
10 KOG4558 Uncharacterized conser 11.9 80 0.0017 34.0 0.2 18 619-637 39-56 (251)
No 1
>KOG2390 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.2e-106 Score=903.85 Aligned_cols=624 Identities=21% Similarity=0.247 Sum_probs=456.7
Q ss_pred eeeeecCCccceeEeEecCCceeeEEeeeeeccccCCCcccchhhhHHHHHhhcCCcccccCcceeEEEEEEEEEEeeCC
Q 038749 153 AFVPVHDPSRNAFIGIQNMGTIFTRRFEADRICSQVPVKLMHLEGLYELFVSKFAYSTLDFSMHVFKVRFTMKLTYKTLP 232 (934)
Q Consensus 153 ~FVqV~dp~r~~y~Gv~~~~~v~~~rFe~~~i~~~vP~~~~hLsGLLdlFksKl~~~~~d~~~~~v~V~iS~r~TY~l~~ 232 (934)
+||+|++.|+ .|+|..+.+ ++.|.++|+. .+++|++||+++|++|+|++..+.+. +. ||+++.
T Consensus 1 vf~~i~~~w~---~~e~~~~~v-~t~~~~vhlr----~~~~~~~~l~~l~k~~~~~~l~~~~e----es-----t~v~p~ 63 (669)
T KOG2390|consen 1 VFCYIKDQWL---SGEASDGNV-TTNFSSVHLR----RRHCSMTDLLYLFKEHLGASISAFHE----ES-----THVVPL 63 (669)
T ss_pred CeEEEeecee---eeeeccCCc-ccceeeEEec----chhhhhhhhhhhhhhhcCCCccccch----hh-----hhhhhh
Confidence 5999999999 999999999 9999999973 78899999999999999999988865 22 888887
Q ss_pred CCCCccccCccccCCCCCCCCCCCCCcccCCCCCCCCCccccccccccceEEEEecCCcccccccccccccCCCcccccc
Q 038749 233 YDDDDDMRGEDVENTEPTDFPGGESGTRTQWDDDCPWSEWYSAEDLVKGFGLVVIWSEKTVEGSFEMAEIENSSPHEAEK 312 (934)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~d~~~~~fGa~~DPi~el~L~atWP~l~~~~~~d~~~~sdLdP~~Ap~ 312 (934)
++..++.... .. .+| ++|+||..++.
T Consensus 64 ~q~~f~~~~~------------~~--------------~~~----------------------------~sd~d~~~~~~ 89 (669)
T KOG2390|consen 64 KQSKFFRNHT------------VE--------------TFG----------------------------HSDFDINYSSY 89 (669)
T ss_pred Hhhhhhhccc------------hh--------------hcc----------------------------cccCCccchhh
Confidence 7654444110 00 022 68999999999
Q ss_pred eEEeeeehh---h---cch--hhhhhhhhhhcccccc-------------------ccCCCCccc---ccc--cCCC--C
Q 038749 313 WILFPNICF---F---SLM--HLKMSFEAQFMEDFVS-------------------VENPGSDNL---KSS--MVIP--S 358 (934)
Q Consensus 313 W~l~~~~~f---~---s~L--a~~~s~~~~~~ed~v~-------------------~~~~s~~~l---~~s--~~ip--~ 358 (934)
|.++++-+= + .++ ++..........|++. ...++...+ +++ ...+ +
T Consensus 90 ~~~~v~~~~~pl~~v~d~~~~~~~e~~rk~~~~d~~~S~~~~~~~e~~~l~~af~k~t~~a~~e~k~g~h~~~ed~vs~~ 169 (669)
T KOG2390|consen 90 WNIKVKSTKSPLLGVLDEILGVYREDTRKAIRSDLNCSLILGKHYEQKELPNAFQKLTINSASEVKIGKHAETEDSVTNG 169 (669)
T ss_pred hhhhhhhccCccccchhhHHHHhHhhhhhhhHHHHhhhhhcccchhhcccchHHHhhccccccchhhccccccccccccc
Confidence 999988761 1 111 1111111122222210 000110000 111 1111 2
Q ss_pred hHHHHHHHHhhcCCCCCCCCccccccCccccccCCCCcChHHHHHHHhhhccCCChHHHHHHHHHHHHHHHHHHHhCCCC
Q 038749 359 PTIIDRVLKDLFHEGVQLPDFAKGQHRSSRSIKGARLESLFAQFCLHSLWFGNCNIRAIAVLWIEFVREIRWYWEESQPL 438 (934)
Q Consensus 359 p~vL~~IL~~LFpda~~~~~~~~~~~~l~~~iKsAP~dSL~~rlal~~~~~~~~~~~~vA~LW~efV~ELR~~WE~~~~i 438 (934)
|......++++|..+..+..+..-..++..+.+.||++| .|+++.|+.+.|+..+|++|.++|.|+|++|.++.+|
T Consensus 170 ~aL~~~~~~f~~~~a~sd~es~~~~~n~~n~~~~ap~~s----~~Ll~~~~~~~t~~~~a~~w~a~v~e~r~~w~~~s~i 245 (669)
T KOG2390|consen 170 PALMKSWVNFIFNEAESDNESLAHELNMLNAASMAPNQS----DDLLVNNVKLDTLFNYANPWSANVFEARYKWAKKSTI 245 (669)
T ss_pred chhhhcCccccchhccCCccccchhhhhhhHhhcCCCch----hHHHHHhhhccchhhhhhHHHHHHHHHHHHHhhcCcC
Confidence 323333333344333322111122456788999999999 6777777788899999999999999999999999999
Q ss_pred CCCCCCCCCCCchhhHHHHHHHHHHHHHHHH-hhhhhhhccCCCCCCCCCcccccccccCCCCCCCCCCcccccccCccc
Q 038749 439 PKMPVNGSIDLSTCLINQKLQMLAICIEKMR-ELNEEFQDCIGSNDPSPADIKEDGQAVDGSNNLRIPDENFDRNCDSQL 517 (934)
Q Consensus 439 Pg~~~~~~pDl~~CLLhQKLQMLN~CI~rk~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ef~~~~~~~~ 517 (934)
|+.+..+.||+++||||||||||||||+||+ .|++..+....+.+ -...+..++ -+.++++.+||.+. ..
T Consensus 246 pw~~a~~~PDlR~CLLHQ~LQmlNcCveRk~~~rea~ek~~ayG~~-----gkA~s~~~E--~d~ddsE~eff~ld-a~- 316 (669)
T KOG2390|consen 246 PWRLAIALPDLRVCLLHQPLQMLNCCVERKLKLREAYEKMEAYGID-----GKACSFSQE--MDMDDSEKEFFMLD-AH- 316 (669)
T ss_pred CcccccCCCcchhhhhcchHHHHHHHHHHHHHHHHhhhhhhhhcch-----hhhccchhh--cccccchhHHHHHH-HH-
Confidence 9999999999999999999999999999999 66665433221110 011111111 11247778899853 11
Q ss_pred ccccCcCccchhcccccCCccccccCCCCCccccccccCccCceecccC-CCccccCCCCCCCCCCHHHHHHHHHHHHHc
Q 038749 518 TADGLRESGNAIQRYTMKPQDVASIDKKPSDFVRRGSAGKVGSMMLLKS-YQSMHAPFTQDAPLMTEDMHEERLHAVEAF 596 (934)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~G~~~~~~~~~Ll~~-~e~l~~P~tQ~~~p~TeD~l~e~~~~l~~l 596 (934)
+.+++.+.| +...++| +|++..+++++||++ |+|||||+||||+|||||||+|++|+|++|
T Consensus 317 ----sagns~e~k---------a~l~l~p-----egrlr~l~nltLLe~pdEplYiPvTQEp~plTEDli~e~~Evllkl 378 (669)
T KOG2390|consen 317 ----SAGNSDEFK---------AELILEP-----EGRLRLLFNLTLLEIPDEPLYIPVTQEPCPLTEDLIDERNEVLLKL 378 (669)
T ss_pred ----hccCCchhh---------hhhccCc-----cchhhhhcCeeeeccCCCceeecccCCCCCCcHHHHHHHHHHHHhc
Confidence 112222221 1222444 577777999999998 999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHHhhhhhhhhcCCCcchhhhhhccCCCCcccCCCCCCCCCCCCccccccCCCCCCccccccccccC
Q 038749 597 SNSFEFSAQLERDILLSDMSAFKAANPDAVFEDFIRWHSPGDWLNDDGKENGPSGIPAVEDLKENWPPQGRLSQRMSEHG 676 (934)
Q Consensus 597 g~~~~~r~~mqs~~LlSDM~aFKaANpg~~~eDFVRW~SPrDwi~~~~~~~~~~~~~~~~~~~~~~~~~g~LS~RM~~~~ 676 (934)
|++..++.|||+.+|||||+|||||||||+||||||||||+|| ++.+++.++ +.+|+||.||+++|
T Consensus 379 G~g~~L~~qm~~~~llsdmeSfkAANPgcilEDFvRWhSPkDw--eevsdEkgn------------~vkgqLS~RM~ieg 444 (669)
T KOG2390|consen 379 GEGDRLHLQMELVKLLSDMESFKAANPGCILEDFVRWHSPKDW--EEVSDEKGN------------PVKGQLSERMLIEG 444 (669)
T ss_pred CccchhHHHHHHHHHHHHHHHHhcCCCCccHHHhhhhcCCcch--hhhcccccc------------cchhhhhhhhcccc
Confidence 9988899999999999999999999999999999999999999 455444332 67899999999999
Q ss_pred chHHHHhhhCCCCCccccCCCCCchhHHHHHHHHHhhCChhhHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHH
Q 038749 677 NLWRKIWNEAPAVSASEQKPLLDPNREGEKILHYLETLRPNDLLEQMVCTAFRASADTLNQTHFGALKQMAMKMDQLYIT 756 (934)
Q Consensus 677 N~W~~~W~~A~p~pa~~Qk~LFD~~~eaEkvLh~Le~~~p~~l~~qll~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~ 756 (934)
|+|+++|++|+|+||++|+||||+|+||||||||||+++++||++||++++||+|+.+|.. .+++...+.+...|+.+.
T Consensus 445 N~W~e~WEtAkpiPv~rQarLFDDt~eaekiLhYLe~~k~ael~e~l~~~l~haa~lkl~e-sL~n~e~~~k~~~qi~k~ 523 (669)
T KOG2390|consen 445 NVWVESWETAKPIPVARQARLFDDTKEAEKILHYLENAKLAELREWLKPTLFHAALLKLTE-SLGNSEEKQKQRTQIAKI 523 (669)
T ss_pred chHHHHHHhcCCCchhhccccccchHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH-hhcchHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999887 555555555555555555
Q ss_pred HHhhhcccccCCCCCCchhHHHHHHHHHhHHHHHHHHHHHHHHhhhcC---CCh--hHHHHHHhhc--cccccCCCCCcc
Q 038749 757 MSSVLKPLQANNLSGDSETIEDLRRLCVVFEHVEKLLTVAASLHRKFL---QAP--RISEAIFSDF--YDFYLPKMGRGS 829 (934)
Q Consensus 757 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~vE~~i~~a~SL~~Kf~---~~~--~~~~~~~~~~--~~~~~~~~g~g~ 829 (934)
++.+ |++++ +.+ ++|..||..|+.||+++.++.+|+. |. +.+ ..+++ ++ + ++|... |.
T Consensus 524 ls~~---c~~~~-~~d----~eL~~ic~qie~ve~m~~R~~qlk~-fem~~~yps~sslq~-vk-L~~~evl~~----d~ 588 (669)
T KOG2390|consen 524 LSNA---CLNNT-PMD----NELSKICSQIEMVENMKVRLMQLKE-FEMHPPYPSESSLQS-VK-LVNIEVLNL----DE 588 (669)
T ss_pred HHHH---HcCCC-ccc----hhHHHHHHHHHHHHHHHHHHHHHHH-HHhcCCCCCccchhh-hh-cccHhhhcc----Cc
Confidence 5555 67765 232 4677788899999999999999999 53 222 34555 44 4 566655 77
Q ss_pred cccchhHhHHHHHHhhhhhhhhhhccCCCCCcchhhhhhhccCCCCCCCCCcceeEEEeecccCCCCCCCCCCCcccccc
Q 038749 830 GQEDVQMEFDMKLQLRNHERQLVSNMFMPPTANQSWRKVLSMGNLLNGHEPILREIIFSSSDHVNGGHYAPSTPRAYQQE 909 (934)
Q Consensus 830 ~~~~~~~~f~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~P~~rE~ilr~~~~~~~~~~~a~~~~~~~~~ 909 (934)
.++||+|.|+.++-.. ...+--| ++- ..+.+.++|+.||+|+|+.. .|.+.+.+..+
T Consensus 589 ~~tiv~rrf~~ag~g~------L~r~~~p-------rlq---n~v~de~~~~ske~ipRtt~----~~~t~~ks~~l--- 645 (669)
T KOG2390|consen 589 EPTIVIRRFDPAGIGK------LDRLTEP-------RLQ---NGVRDEYIFNSKESIPRTTT----IPMTHRKSADL--- 645 (669)
T ss_pred ccceeeeccccccchH------HHhhccH-------hhh---ccCcccccccccCccccccC----Ccccccchhhc---
Confidence 7899999999988211 0002111 111 22578999999999999765 24666677662
Q ss_pred ccceeeEEeecccceeeeeeeec
Q 038749 910 IETYRMYICGTSNDLRVALSVTS 932 (934)
Q Consensus 910 ~~p~Rmy~~~t~~e~r~a~~~~s 932 (934)
-||+||...|...+|++|||||
T Consensus 646 -~pq~mrs~~t~e~~rl~gafss 667 (669)
T KOG2390|consen 646 -SPQDMRSLYTSEANRLNGAFSS 667 (669)
T ss_pred -CCCCcchhhhhhhhhhcccccC
Confidence 3889999999999999999998
No 2
>PF13890 Rab3-GTPase_cat: Rab3 GTPase-activating protein catalytic subunit
Probab=100.00 E-value=1.5e-64 Score=502.82 Aligned_cols=157 Identities=46% Similarity=0.788 Sum_probs=147.9
Q ss_pred CCccccccccCccCceecccCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCchH---HHHHHHHHHHHhhhhhhhhcC
Q 038749 546 PSDFVRRGSAGKVGSMMLLKSYQSMHAPFTQDAPLMTEDMHEERLHAVEAFSNSFE---FSAQLERDILLSDMSAFKAAN 622 (934)
Q Consensus 546 ~~~~~r~G~~~~~~~~~Ll~~~e~l~~P~tQ~~~p~TeD~l~e~~~~l~~lg~~~~---~r~~mqs~~LlSDM~aFKaAN 622 (934)
.++..|+|+++++++++||++|+|||+|+||+++|||||||+||+++|.+||++.+ +|+||||++||||||||||||
T Consensus 5 ~~~~~~~G~~~~~~~~~Ll~~gepl~~P~tQ~~~p~TeD~l~e~~e~l~~lg~~~~~~~~r~~mQs~~LlSDM~aFKAAN 84 (164)
T PF13890_consen 5 GEDSKPEGRLKPHGNLRLLETGEPLYIPITQEPPPMTEDMLEEQEEELLKLGTSAEGSELRARMQSASLLSDMQAFKAAN 84 (164)
T ss_pred cccccCCcccccCCCceeeCCCCEeecCCCCCCCCCcHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34567899999999999999999999999999999999999999999999999876 999999999999999999999
Q ss_pred CCcchhhhhhccCCCCcccCCCCCCCCCCCCccccccCCCCCCccccccccccCchHHHHhhhCCCCCccccCCCCCchh
Q 038749 623 PDAVFEDFIRWHSPGDWLNDDGKENGPSGIPAVEDLKENWPPQGRLSQRMSEHGNLWRKIWNEAPAVSASEQKPLLDPNR 702 (934)
Q Consensus 623 pg~~~eDFVRW~SPrDwi~~~~~~~~~~~~~~~~~~~~~~~~~g~LS~RM~~~~N~W~~~W~~A~p~pa~~Qk~LFD~~~ 702 (934)
|||||||||||||||||+++++.+++ +++..+|+||+||+++||+|+++|++|+|+||++||||||+++
T Consensus 85 pg~vfeDFVRW~SPrDw~~~~~~~~~-----------~~~~~~g~LS~RM~~~~N~W~~~W~~A~p~pa~~Qk~LFD~~~ 153 (164)
T PF13890_consen 85 PGCVFEDFVRWYSPRDWIEEEVDDEK-----------GNFAPEGYLSERMRIPGNIWRELWESAKPVPASRQKRLFDPTK 153 (164)
T ss_pred CCcchHhhhhccCCCCcCcCcccccc-----------cCCCCCCCccHHHcCCCChHHHHHhcCCCCChhhccccCChHH
Confidence 99999999999999999988765542 2358899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhh
Q 038749 703 EGEKILHYLET 713 (934)
Q Consensus 703 eaEkvLh~Le~ 713 (934)
|||||||||||
T Consensus 154 eaEkvlhyLEt 164 (164)
T PF13890_consen 154 EAEKVLHYLET 164 (164)
T ss_pred HHHHHHHHHhC
Confidence 99999999997
No 3
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=58.45 E-value=12 Score=38.97 Aligned_cols=66 Identities=11% Similarity=0.193 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHhhhcccccCCCCCCchhHHHHHHHHHhHHHHHHHHHHHHHHhhhcCCChhHHHHHHhhc
Q 038749 745 QMAMKMDQLYITMSSVLKPLQANNLSGDSETIEDLRRLCVVFEHVEKLLTVAASLHRKFLQAPRISEAIFSDF 817 (934)
Q Consensus 745 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~vE~~i~~a~SL~~Kf~~~~~~~~~~~~~~ 817 (934)
+|.+.|...+.+++...... ..+.+++|+++...++.+|.+...+..|+.|...-...++.|-+.|
T Consensus 102 QVqqeL~~tf~rL~~~Vd~~-------~~eL~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~~eL~~F~~~y 167 (171)
T PF04799_consen 102 QVQQELSSTFARLCQQVDQT-------KNELEDEIKQLEKEIQRLEEIQSKSKTLRNKANWLESELERFQEQY 167 (171)
T ss_dssp --------HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455555555544433211 1467889999999999999999999999999988778888888776
No 4
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=37.99 E-value=2.1e+02 Score=31.34 Aligned_cols=106 Identities=14% Similarity=0.090 Sum_probs=65.5
Q ss_pred HHHHHhhCChhhHHHHHHHHHHHHHHHHhhhh-ccc----chHHHHHHHHHHHHHHHhhhcccccCCCCCCchhHHHHHH
Q 038749 707 ILHYLETLRPNDLLEQMVCTAFRASADTLNQT-HFG----ALKQMAMKMDQLYITMSSVLKPLQANNLSGDSETIEDLRR 781 (934)
Q Consensus 707 vLh~Le~~~p~~l~~qll~~~~~~a~~~l~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 781 (934)
+=|-+|.+.|.-+-..+-++++.|.+.+|..- .|. ....++.+++........+++.+ ..++..+..
T Consensus 96 iGHDvEhiD~elvrkEl~nAlvRAGLktL~~v~~~~d~ke~~ee~kekl~E~~~EkeeL~~el--------eele~e~ee 167 (290)
T COG4026 96 IGHDVEHIDVELVRKELKNALVRAGLKTLQRVPEYMDLKEDYEELKEKLEELQKEKEELLKEL--------EELEAEYEE 167 (290)
T ss_pred CCCCccccCHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHH
Confidence 67889999999999999999999999998752 232 23344555555555444443321 123334444
Q ss_pred HHHhHHHHHHHHHHHHHHhhhcCCChhHHH-HHHhhcccc
Q 038749 782 LCVVFEHVEKLLTVAASLHRKFLQAPRISE-AIFSDFYDF 820 (934)
Q Consensus 782 l~~~~e~vE~~i~~a~SL~~Kf~~~~~~~~-~~~~~~~~~ 820 (934)
+-..+..+|.-.++.+.-.+|+++....++ +|-...+++
T Consensus 168 ~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~ 207 (290)
T COG4026 168 VQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGV 207 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcccc
Confidence 444456667777788888888876554443 333333443
No 5
>PF11855 DUF3375: Protein of unknown function (DUF3375); InterPro: IPR021804 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 479 to 499 amino acids in length.
Probab=22.97 E-value=3.1e+02 Score=33.15 Aligned_cols=69 Identities=14% Similarity=0.204 Sum_probs=39.9
Q ss_pred cccCCCCCchhHHHHHHHHHhhCC-hhhHHHH-HHHHHHHHHHHHhhh-h---cccchHHHHHHHHHHHHHHHhhh
Q 038749 692 SEQKPLLDPNREGEKILHYLETLR-PNDLLEQ-MVCTAFRASADTLNQ-T---HFGALKQMAMKMDQLYITMSSVL 761 (934)
Q Consensus 692 ~~Qk~LFD~~~eaEkvLh~Le~~~-p~~l~~q-ll~~~~~~a~~~l~~-~---~~~~~~~~~~~~~~~~~~~~~~~ 761 (934)
..-...|+-|..|+|+|.|++.+. +.-+.-. =+.+++ ..+..|.. + .-..+..+...++++-..+..+-
T Consensus 90 ~~~e~~y~lT~~a~~Al~~l~~L~~~~~~~TeSRl~tv~-~~l~~la~~~~~Dp~~Ri~~Le~e~~~i~~EI~~l~ 164 (478)
T PF11855_consen 90 GSDEEHYELTPAAEKALRFLERLEERRFVGTESRLNTVF-DALRQLAEGTDPDPERRIAELEREIAEIDAEIDRLE 164 (478)
T ss_pred CCCCeeEEeCHHHHHHHHHHHHcCCCcccccHHHHHHHH-HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334689999999999999999974 3322111 111222 22222221 1 23356677777777766666653
No 6
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=21.28 E-value=2.3e+02 Score=34.52 Aligned_cols=23 Identities=30% Similarity=0.605 Sum_probs=17.5
Q ss_pred chhHHHHHHHHHhHHHHHHHHHH
Q 038749 773 SETIEDLRRLCVVFEHVEKLLTV 795 (934)
Q Consensus 773 ~~~~~~~~~l~~~~e~vE~~i~~ 795 (934)
.++..++.++..+|+.+...|..
T Consensus 128 ~~l~~~~~~~~~~fek~~~yi~~ 150 (518)
T PF10212_consen 128 MELHSDMKRLTAVFEKLQTYISL 150 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 36777888888888888877663
No 7
>PF07425 Pardaxin: Pardaxin; InterPro: IPR009990 This family consists of several Pardaxin proteins. Pardaxin, a 33-amino-acid pore-forming polypeptide toxin isolated from the Red Sea Moses sole Pardachirus marmoratus, has a helix-hinge-helix structure. This is a common structural motif found both in antibacterial peptides that can act selectively on bacterial membranes (e.g., cecropin), and in cytotoxic peptides that can lyse both mammalian and bacterial cells (e.g., melittin). Pardaxin possesses a high antibacterial activity with a significantly reduced haemolytic activity towards human red blood cells compared with melittin []. Pardaxin has also been found to have a shark repellent action [].; GO: 0005576 extracellular region; PDB: 1XC0_A 2KNS_A.
Probab=20.88 E-value=63 Score=24.33 Aligned_cols=24 Identities=38% Similarity=0.469 Sum_probs=20.4
Q ss_pred ccChhhhhhHhhHHHHHHHhCCCC
Q 038749 127 VLDAPEASKLLSAVAIALSNCSSL 150 (934)
Q Consensus 127 i~seSe~~~LLSSvtIAl~N~~C~ 150 (934)
|++..-.++|||++.-||+.+|.+
T Consensus 9 iissplfktllsavgsalsssggq 32 (33)
T PF07425_consen 9 IISSPLFKTLLSAVGSALSSSGGQ 32 (33)
T ss_dssp HCCTTTCHHHHHHHHHHCTTTCCG
T ss_pred HHccHHHHHHHHHHHHHHhcccCC
Confidence 557778899999999999998863
No 8
>PRK13266 Thf1-like protein; Reviewed
Probab=14.14 E-value=1.1e+03 Score=25.89 Aligned_cols=105 Identities=20% Similarity=0.253 Sum_probs=58.9
Q ss_pred hHHHHHHHHHhhCChhhHHHHHHHH------HHHHHH-HHhhhhc--ccchHHHHHHHHHHHHHHHhhhcccccCCCCCC
Q 038749 702 REGEKILHYLETLRPNDLLEQMVCT------AFRASA-DTLNQTH--FGALKQMAMKMDQLYITMSSVLKPLQANNLSGD 772 (934)
Q Consensus 702 ~eaEkvLh~Le~~~p~~l~~qll~~------~~~~a~-~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 (934)
..|++...|....++.+|..++... .+.+.+ .+..... |..+=.+ = ++.-+..+ ++.-..+.
T Consensus 93 ~dA~~l~~~a~~~s~~~i~~~l~~~~~~~~~~l~~~l~~ia~~~~f~YSRl~AI--G---L~~LLe~a----~~~~~~d~ 163 (225)
T PRK13266 93 QDAERLLELAKGKSLKEILSWLTQKALGEPGGLLATLLAIANNSKFKYSRLFAI--G---LYTLLEEA----QPDLVKDE 163 (225)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHhccccccchhHHHHHHHHhcCCCCchHHHHHH--H---HHHHHHhc----CcccccCH
Confidence 5788889999999999988877643 122222 2222222 2222111 0 11111111 11000122
Q ss_pred chhHHHHHHHHHh----HHHHHHHHHHHHHHhhhcCCChhHHHHHHh
Q 038749 773 SETIEDLRRLCVV----FEHVEKLLTVAASLHRKFLQAPRISEAIFS 815 (934)
Q Consensus 773 ~~~~~~~~~l~~~----~e~vE~~i~~a~SL~~Kf~~~~~~~~~~~~ 815 (934)
++..+.+.+||.. .+.||+-+..-+|+..|+.++.++++.++.
T Consensus 164 ~~~~~~l~~l~~~L~ls~~kv~KDL~lYrsnLeKm~Qa~el~ee~~~ 210 (225)
T PRK13266 164 EKLNEALKDISEGLGLSKEKVEKDLDLYRSNLEKMEQALELIEETLE 210 (225)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHhhHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3344566777755 578888888899999999888888776553
No 9
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=12.03 E-value=3.3e+02 Score=24.37 Aligned_cols=12 Identities=25% Similarity=0.238 Sum_probs=4.4
Q ss_pred HHhhhcccccCC
Q 038749 757 MSSVLKPLQANN 768 (934)
Q Consensus 757 ~~~~~~~~~~~~ 768 (934)
...-++.+.+.|
T Consensus 38 ~~~eLr~~V~~n 49 (87)
T PF08700_consen 38 KDEELRKLVYEN 49 (87)
T ss_pred HHHHHHHHHHhh
Confidence 333333333434
No 10
>KOG4558 consensus Uncharacterized conserved protein [Function unknown]
Probab=11.88 E-value=80 Score=33.96 Aligned_cols=18 Identities=39% Similarity=0.898 Sum_probs=15.1
Q ss_pred hhcCCCcchhhhhhccCCC
Q 038749 619 KAANPDAVFEDFIRWHSPG 637 (934)
Q Consensus 619 KaANpg~~~eDFVRW~SPr 637 (934)
|..|.-+||-||| ||+||
T Consensus 39 ~PrnRTVvfRgF~-~h~~R 56 (251)
T KOG4558|consen 39 YPRNRTVVFRGFV-WHKPR 56 (251)
T ss_pred CcccceEEEecce-ecCCC
Confidence 4456679999999 99999
Done!