Query 038749
Match_columns 934
No_of_seqs 139 out of 157
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 04:09:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038749.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038749hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1t3j_A Mitofusin 1; coiled coi 53.8 7.7 0.00026 35.6 3.0 66 745-817 29-94 (96)
2 3g80_A Protein B2; RNA-binding 31.9 1E+02 0.0034 27.8 6.4 61 738-802 25-86 (97)
3 2kwt_A Protease NS2-3; NS2 dom 27.6 19 0.00064 26.9 0.9 15 33-47 12-26 (33)
4 1xc0_A Pardaxin P-4, PA4; BEND 23.7 40 0.0014 24.3 1.9 24 127-150 9-32 (33)
5 2az0_A B2 protein; protein-RNA 19.7 1.7E+02 0.0059 25.2 5.3 58 739-802 4-62 (73)
6 2xns_C RGS14, regulator of G-p 16.9 31 0.0011 26.4 0.2 8 627-634 33-40 (40)
7 4f0h_B Ribulose bisphosphate c 9.9 1.9E+02 0.0066 28.1 3.4 48 578-625 11-78 (138)
8 2ljw_A ALR2454 protein; novel 9.2 2.8E+02 0.0096 25.9 4.1 41 569-609 33-77 (110)
9 1rbl_M Ribulose 1,5 bisphospha 8.3 1.9E+02 0.0066 26.9 2.7 21 578-598 17-37 (109)
10 1svd_M Ribulose bisphosphate c 8.2 2.1E+02 0.0073 26.7 2.9 21 578-598 19-39 (110)
No 1
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=53.83 E-value=7.7 Score=35.58 Aligned_cols=66 Identities=20% Similarity=0.249 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHhhhcccccCCCCCCchhHHHHHHHHHhHHHHHHHHHHHHHHhhhcCCChhHHHHHHhhc
Q 038749 745 QMAMKMDQLYITMSSVLKPLQANNLSGDSETIEDLRRLCVVFEHVEKLLTVAASLHRKFLQAPRISEAIFSDF 817 (934)
Q Consensus 745 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~vE~~i~~a~SL~~Kf~~~~~~~~~~~~~~ 817 (934)
+|.+.|...++.++....-.+ .+.+++|++|-+.+..+|.+...+.-|+.|..--...++.|-+.|
T Consensus 29 QVQqELs~tfarLc~~Vd~t~-------~eL~~EI~~L~~eI~~LE~iqs~aK~LRnKA~~L~~eLe~F~~~y 94 (96)
T 1t3j_A 29 QVQQEMATTFARLCQQVDMTQ-------KHLEEEIARLSKEIDQLEKMQNNSKLLRNKAVQLESELENFSKQF 94 (96)
T ss_dssp ------CCHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 455555555555544432211 367888999999999999999999999999977677778777765
No 2
>3g80_A Protein B2; RNA-binding, viral protein, suppressor of RNAI, RNA interference; 2.50A {Nodamura virus}
Probab=31.93 E-value=1e+02 Score=27.80 Aligned_cols=61 Identities=23% Similarity=0.321 Sum_probs=46.3
Q ss_pred hcccchHHHHHHHHHHHHHHHhhhcccccCCCCCCchhHHHHHHHHHhHHHHHHHHHHH-HHHhhh
Q 038749 738 THFGALKQMAMKMDQLYITMSSVLKPLQANNLSGDSETIEDLRRLCVVFEHVEKLLTVA-ASLHRK 802 (934)
Q Consensus 738 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~vE~~i~~a-~SL~~K 802 (934)
+.|+-++.+-.+|+|+++.+..++.++-. ++.+..+||+.+|.-...+|..+.++ +||..|
T Consensus 25 s~yeLIq~lP~~l~qv~q~~v~ai~sl~~----qDpnV~kDLdn~~acL~k~~~t~~rat~SLL~K 86 (97)
T 3g80_A 25 CAYELIKSLPAKLEQLAQETQATIQTLMI----ADPNVNKDLRAFCEFLTVQHQRAYRATNSLLIK 86 (97)
T ss_dssp CHHHHHHTHHHHHHHHHHHHHHHHHTCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhccc----cCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 35677788888999988888776544321 22578899999999999999988875 688766
No 3
>2kwt_A Protease NS2-3; NS2 domain, membrane protein, viral prote; NMR {Hepatitis c virus}
Probab=27.61 E-value=19 Score=26.92 Aligned_cols=15 Identities=33% Similarity=0.696 Sum_probs=13.2
Q ss_pred hHHHHHHHHHHHHhh
Q 038749 33 ERFISEIEAICRQWL 47 (934)
Q Consensus 33 ErFia~lEeil~~W~ 47 (934)
.=||+|.|+.+|.|-
T Consensus 12 qYfi~R~EA~l~vWv 26 (33)
T 2kwt_A 12 QYFITRAEAHLQVWI 26 (33)
T ss_dssp HHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHhhC
Confidence 359999999999994
No 4
>1xc0_A Pardaxin P-4, PA4; BEND-helix-BEND-helix motif, signaling protein; NMR {Synthetic} SCOP: j.6.1.1 PDB: 2kns_A
Probab=23.71 E-value=40 Score=24.33 Aligned_cols=24 Identities=38% Similarity=0.469 Sum_probs=20.6
Q ss_pred ccChhhhhhHhhHHHHHHHhCCCC
Q 038749 127 VLDAPEASKLLSAVAIALSNCSSL 150 (934)
Q Consensus 127 i~seSe~~~LLSSvtIAl~N~~C~ 150 (934)
|++..-.++|||++.-||+.+|.+
T Consensus 9 iissplfktllsavgsalsssggq 32 (33)
T 1xc0_A 9 IISSPLFKTLLSAVGSALSSSGGQ 32 (33)
T ss_dssp HTTTTTHHHHHHHHHHHTTTTTTC
T ss_pred HHccHHHHHHHHHHHHHhhcccCC
Confidence 557778899999999999998864
No 5
>2az0_A B2 protein; protein-RNA complex, four-helix bundle, viral protein/RNA complex; HET: 5BU; 2.60A {Flock house virus} SCOP: a.30.8.1 PDB: 2az2_A* 2b9z_A
Probab=19.70 E-value=1.7e+02 Score=25.23 Aligned_cols=58 Identities=12% Similarity=0.197 Sum_probs=42.0
Q ss_pred cccchHHHHHHHHHHHHHHHhhhcccccCCCCCCchhHHHHHHHHHhHHHHHHHHHHH-HHHhhh
Q 038749 739 HFGALKQMAMKMDQLYITMSSVLKPLQANNLSGDSETIEDLRRLCVVFEHVEKLLTVA-ASLHRK 802 (934)
Q Consensus 739 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~vE~~i~~a-~SL~~K 802 (934)
.|+-++.+-.+|+|+++.+.++ ++|. -.....+||+.+|.-...+|..+.++ +||..|
T Consensus 4 ~yeLiq~lP~~l~q~~q~v~~~--t~qd----a~pnV~kDLdn~~acL~k~~~t~~rat~sLL~K 62 (73)
T 2az0_A 4 KLALIQELPDRIQTAVEAAMGM--SYQD----APNNVRRDLDNLHACLNKAKLTVSRMVTSLLEK 62 (73)
T ss_dssp HHHHHHTHHHHHHHHHHTGGGS--CCSS----SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHhc----cCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3455666777888887776655 4554 12467889999998899999888874 677765
No 6
>2xns_C RGS14, regulator of G-protein signaling 14; hydrolase-peptide complex, ADP-ribosylation, arginine finger binding, lipoprotein, nucleotide-binding; HET: GDP SRT; 3.41A {Homo sapiens}
Probab=16.85 E-value=31 Score=26.39 Aligned_cols=8 Identities=50% Similarity=1.211 Sum_probs=6.0
Q ss_pred hhhhhhcc
Q 038749 627 FEDFIRWH 634 (934)
Q Consensus 627 ~eDFVRW~ 634 (934)
+.||.||+
T Consensus 33 l~df~r~~ 40 (40)
T 2xns_C 33 LRDFDRWF 40 (40)
T ss_dssp HHHHTCC-
T ss_pred hHHHHhcC
Confidence 78888885
No 7
>4f0h_B Ribulose bisphosphate carboxylase small chain; alpha beta domain, catalytic domain TIM barrel, carboxylase/oxygenase, nitrosylation; 1.96A {Galdieria sulphuraria} PDB: 4f0k_B 4f0m_B 1iwa_B 1bwv_S*
Probab=9.93 E-value=1.9e+02 Score=28.06 Aligned_cols=48 Identities=10% Similarity=0.096 Sum_probs=33.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCchH--------HH--HHH----------HHHHHHhhhhhhhhcCCCc
Q 038749 578 APLMTEDMHEERLHAVEAFSNSFE--------FS--AQL----------ERDILLSDMSAFKAANPDA 625 (934)
Q Consensus 578 ~~p~TeD~l~e~~~~l~~lg~~~~--------~r--~~m----------qs~~LlSDM~aFKaANpg~ 625 (934)
-||||+|+|.+|-+.+++-|=... .| -+- -.+..|...++-++|+|++
T Consensus 11 LP~ltd~qI~kQI~YlL~qGw~~~iEf~d~~~~r~~yW~mWkLPmFg~~d~~~Vl~Ele~C~k~~p~~ 78 (138)
T 4f0h_B 11 LPDLTDEQIKKQIDYMISKKLAIGIEYTNDIHPRNSFWEMWGLPLFEVTDPAPVLFEINACRKAKSNF 78 (138)
T ss_dssp SCCCCHHHHHHHHHHHHHTTCEEEEEEESCCCTTCCCCEESSCCBCSCCSHHHHHHHHHHHHHHTTTS
T ss_pred CCCCCHHHHHHHHHHHHhCCCEEEEEeCCCCCCcCCEEeecCCCCcCCCCHHHHHHHHHHHHHHCCCC
Confidence 589999999999999997653210 00 000 1357788888888888884
No 8
>2ljw_A ALR2454 protein; novel fold, structural genomics, northeast structural genomi consortium, NESG, PSI-biology, protein structure initiative function; NMR {Nostoc SP}
Probab=9.20 E-value=2.8e+02 Score=25.94 Aligned_cols=41 Identities=15% Similarity=0.156 Sum_probs=28.9
Q ss_pred ccccCCCCCCCCCCHHHHHHH----HHHHHHcCCchHHHHHHHHH
Q 038749 569 SMHAPFTQDAPLMTEDMHEER----LHAVEAFSNSFEFSAQLERD 609 (934)
Q Consensus 569 ~l~~P~tQ~~~p~TeD~l~e~----~~~l~~lg~~~~~r~~mqs~ 609 (934)
.|..=..|..-||||..-.++ ++.|.+.|....+|+.++.+
T Consensus 33 VMW~yLeQ~SFPltE~eY~~hL~~va~~L~~wG~~~~Vr~~l~~t 77 (110)
T 2ljw_A 33 VMWKYLEQASFPMNETEYQEHLDSVANYLHALGGAVQVKTFITQT 77 (110)
T ss_dssp EEEEETTSTTCSSCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHC
T ss_pred eehHhhccCCCCCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHhC
Confidence 344456799999999985555 45566789877788766543
No 9
>1rbl_M Ribulose 1,5 bisphosphate carboxylase/oxygenase ( chain); lyase(carbon-carbon), lyase; HET: CAP; 2.20A {Synechococcus elongatus} SCOP: d.73.1.1 PDB: 1rsc_M*
Probab=8.34 E-value=1.9e+02 Score=26.93 Aligned_cols=21 Identities=5% Similarity=0.061 Sum_probs=17.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCC
Q 038749 578 APLMTEDMHEERLHAVEAFSN 598 (934)
Q Consensus 578 ~~p~TeD~l~e~~~~l~~lg~ 598 (934)
-||||+++|.+|-+.+.+-|=
T Consensus 17 LP~lt~eqI~kQI~Yll~qGw 37 (109)
T 1rbl_M 17 LPPLSDRQIAAQIEYMIEQGF 37 (109)
T ss_dssp SSCCCHHHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHCCC
Confidence 479999999999999987663
No 10
>1svd_M Ribulose bisphosphate carboxylase small chain; beta-alpha-barrel, lyase; 1.80A {Halothiobacillus neapolitanus} SCOP: d.73.1.1
Probab=8.17 E-value=2.1e+02 Score=26.69 Aligned_cols=21 Identities=14% Similarity=0.079 Sum_probs=18.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCC
Q 038749 578 APLMTEDMHEERLHAVEAFSN 598 (934)
Q Consensus 578 ~~p~TeD~l~e~~~~l~~lg~ 598 (934)
-||||+++|.+|-+.+.+-|=
T Consensus 19 LP~lt~eqI~kQV~Yll~qGw 39 (110)
T 1svd_M 19 LPPMNAERIRAQIKYAIAQGW 39 (110)
T ss_dssp SCCCCHHHHHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHHHHCCC
Confidence 479999999999999997664
Done!