Query 038749
Match_columns 934
No_of_seqs 139 out of 157
Neff 5.2
Searched_HMMs 13730
Date Mon Mar 25 04:09:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038749.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/038749hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1lrza1 a.2.7.4 (A:245-309) Me 14.8 1.8E+02 0.013 22.7 6.4 59 744-804 6-64 (65)
2 d1s3aa1 c.47.1.22 (A:15-99) NA 12.7 46 0.0033 27.2 2.3 30 597-631 14-43 (85)
3 d1gk8i_ d.73.1.1 (I:) Ribulose 9.4 81 0.0059 27.9 2.8 21 578-598 18-38 (126)
4 d1s7oa_ a.4.13.3 (A:) Hypothet 9.1 4.8E+02 0.035 21.6 8.3 32 706-737 25-62 (106)
5 d1wdds_ d.73.1.1 (S:) Ribulose 8.0 99 0.0072 27.2 2.8 21 578-598 18-38 (122)
6 d1svdm1 d.73.1.1 (M:3-110) Rib 7.8 1.1E+02 0.0078 26.4 2.9 21 578-598 17-37 (108)
7 d1rbli_ d.73.1.1 (I:) Ribulose 6.7 1.2E+02 0.0088 26.1 2.7 21 578-598 17-37 (109)
8 d1bxni_ d.73.1.1 (I:) Ribulose 6.7 1.2E+02 0.0087 26.9 2.7 47 578-624 11-77 (129)
9 d1bwvs_ d.73.1.1 (S:) Ribulose 5.7 1.5E+02 0.011 26.4 2.9 47 578-624 11-77 (138)
10 d1m1eb_ a.161.1.1 (B:) beta-ca 5.4 68 0.0049 25.7 0.2 31 590-631 15-48 (70)
No 1
>d1lrza1 a.2.7.4 (A:245-309) Methicillin resistance protein FemA probable tRNA-binding arm {Staphylococcus aureus [TaxId: 1280]}
Probab=14.77 E-value=1.8e+02 Score=22.65 Aligned_cols=59 Identities=14% Similarity=0.172 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHhhhcccccCCCCCCchhHHHHHHHHHhHHHHHHHHHHHHHHhhhcC
Q 038749 744 KQMAMKMDQLYITMSSVLKPLQANNLSGDSETIEDLRRLCVVFEHVEKLLTVAASLHRKFL 804 (934)
Q Consensus 744 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~vE~~i~~a~SL~~Kf~ 804 (934)
..+....+++-..+..+-..|.-+ ++..+....+++|-.-+++.+.=|..|..|..|.+
T Consensus 6 ~~L~~~~~~L~~~i~k~~~~lekn--P~skK~~nk~~el~~Q~~s~~~ki~Ea~~li~k~G 64 (65)
T d1lrza1 6 KELNEERDILNKDLNKALKDIEKR--PENKKAHNKRDNLQQQLDANEQKIEEGKRLQEEHG 64 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 334444444444444443333322 45677888899998889999999999999988865
No 2
>d1s3aa1 c.47.1.22 (A:15-99) NADH-ubiquinone oxidoreductase b8 subunit, CI-B8 {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.69 E-value=46 Score=27.19 Aligned_cols=30 Identities=20% Similarity=0.087 Sum_probs=21.4
Q ss_pred CCchHHHHHHHHHHHHhhhhhhhhcCCCcchhhhh
Q 038749 597 SNSFEFSAQLERDILLSDMSAFKAANPDAVFEDFI 631 (934)
Q Consensus 597 g~~~~~r~~mqs~~LlSDM~aFKaANpg~~~eDFV 631 (934)
|.|.++|. -|.++-..||++||.+.|.=+.
T Consensus 14 ~sS~G~R~-----Fi~~~l~~~~~~NP~v~i~v~~ 43 (85)
T d1s3aa1 14 PGSQGVRD-----FIEKRYVELKKANPDLPILIRE 43 (85)
T ss_dssp CCCHHHHH-----HHHHTHHHHHHHSTTCCEEEEC
T ss_pred CCcHHHHH-----HHHHhHHHHHHHCCCceEEEEE
Confidence 45566885 4555667799999998876543
No 3
>d1gk8i_ d.73.1.1 (I:) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=9.36 E-value=81 Score=27.94 Aligned_cols=21 Identities=14% Similarity=0.167 Sum_probs=18.6
Q ss_pred CCCCCHHHHHHHHHHHHHcCC
Q 038749 578 APLMTEDMHEERLHAVEAFSN 598 (934)
Q Consensus 578 ~~p~TeD~l~e~~~~l~~lg~ 598 (934)
-||||+|+|..|-+.+.+-|=
T Consensus 18 LPpLtdeqI~kQI~Y~i~~GW 38 (126)
T d1gk8i_ 18 LPPLTDEQIAAQVDYIVANGW 38 (126)
T ss_dssp SSCCCHHHHHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHHHhcCC
Confidence 589999999999999998774
No 4
>d1s7oa_ a.4.13.3 (A:) Hypothetical protein SPy1201 {Streptococcus pyogenes [TaxId: 1314]}
Probab=9.15 E-value=4.8e+02 Score=21.60 Aligned_cols=32 Identities=13% Similarity=0.270 Sum_probs=23.6
Q ss_pred HHHHHHhhCChhhHHHHH------HHHHHHHHHHHhhh
Q 038749 706 KILHYLETLRPNDLLEQM------VCTAFRASADTLNQ 737 (934)
Q Consensus 706 kvLh~Le~~~p~~l~~ql------l~~~~~~a~~~l~~ 737 (934)
-+|+|++.++..|+...| +...++-|...|.+
T Consensus 25 ~~L~y~~~ls~~EIA~~lgiS~~aV~~~l~RA~~~L~~ 62 (106)
T d1s7oa_ 25 IELYYADDYSLAEIADEFGVSRQAVYDNIKRTEKILET 62 (106)
T ss_dssp HHHHHHTCCCHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 379999999999998874 44556666666653
No 5
>d1wdds_ d.73.1.1 (S:) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Rice (Oryza sativa) [TaxId: 4530]}
Probab=8.02 E-value=99 Score=27.22 Aligned_cols=21 Identities=10% Similarity=-0.024 Sum_probs=18.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCC
Q 038749 578 APLMTEDMHEERLHAVEAFSN 598 (934)
Q Consensus 578 ~~p~TeD~l~e~~~~l~~lg~ 598 (934)
-||||+++|..|-+.|.+-|=
T Consensus 18 LP~ltd~qI~~QI~yll~qGw 38 (122)
T d1wdds_ 18 LPPLTVEDLLKQIEYLLRSKW 38 (122)
T ss_dssp SSCCCHHHHHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHHHHCCC
Confidence 589999999999999998774
No 6
>d1svdm1 d.73.1.1 (M:3-110) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Halothiobacillus neapolitanus [TaxId: 927]}
Probab=7.78 E-value=1.1e+02 Score=26.44 Aligned_cols=21 Identities=14% Similarity=0.079 Sum_probs=18.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCC
Q 038749 578 APLMTEDMHEERLHAVEAFSN 598 (934)
Q Consensus 578 ~~p~TeD~l~e~~~~l~~lg~ 598 (934)
-||||+++|.+|-+-|.+-|=
T Consensus 17 LP~Ltde~I~~QV~yll~qGw 37 (108)
T d1svdm1 17 LPPMNAERIRAQIKYAIAQGW 37 (108)
T ss_dssp SCCCCHHHHHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHHHHCCC
Confidence 589999999999999987664
No 7
>d1rbli_ d.73.1.1 (I:) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Synechococcus sp., strain pcc 6301 [TaxId: 1131]}
Probab=6.69 E-value=1.2e+02 Score=26.10 Aligned_cols=21 Identities=5% Similarity=0.061 Sum_probs=18.0
Q ss_pred CCCCCHHHHHHHHHHHHHcCC
Q 038749 578 APLMTEDMHEERLHAVEAFSN 598 (934)
Q Consensus 578 ~~p~TeD~l~e~~~~l~~lg~ 598 (934)
-||||+++|.+|-+.|.+-|=
T Consensus 17 LP~Ltd~~I~~QV~yll~qGw 37 (109)
T d1rbli_ 17 LPPLSDRQIAAQIEYMIEQGF 37 (109)
T ss_dssp SSCCCHHHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHhCCC
Confidence 589999999999999987664
No 8
>d1bxni_ d.73.1.1 (I:) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Alcaligenes eutrophus [TaxId: 106590]}
Probab=6.67 E-value=1.2e+02 Score=26.91 Aligned_cols=47 Identities=11% Similarity=0.119 Sum_probs=33.6
Q ss_pred CCCCCHHHHHHHHHHHHHcCCchH--------HH--HH-------H---HHHHHHhhhhhhhhcCCC
Q 038749 578 APLMTEDMHEERLHAVEAFSNSFE--------FS--AQ-------L---ERDILLSDMSAFKAANPD 624 (934)
Q Consensus 578 ~~p~TeD~l~e~~~~l~~lg~~~~--------~r--~~-------m---qs~~LlSDM~aFKaANpg 624 (934)
-||||+++|.+|-+.|++-|-... .| -+ . -.+..|+..++.++++||
T Consensus 11 LP~Ltd~~I~~QV~yll~qG~~i~iE~ad~r~~r~~yW~mw~lPmf~~~d~~~Vl~ele~c~~e~p~ 77 (129)
T d1bxni_ 11 LPELTDEQITKQLEYCLNQGWAVGLEYTDDPHPRNTYWEMFGLPMFDLRDAAGILMEINNARNTFPN 77 (129)
T ss_dssp SSCCCHHHHHHHHHHHHHHTCEEEEEEESCCCTTCCCCEESSSCBTTCCCHHHHHHHHHHHHHHCSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCEeeEEEecCcCcccchhhccccccccCCCHHHHHHHHHHHHHHCCc
Confidence 589999999999999997654221 00 00 0 136788889999999998
No 9
>d1bwvs_ d.73.1.1 (S:) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Galdieria partita [TaxId: 83374]}
Probab=5.72 E-value=1.5e+02 Score=26.45 Aligned_cols=47 Identities=11% Similarity=0.157 Sum_probs=32.0
Q ss_pred CCCCCHHHHHHHHHHHHHcCCchH--------HHH------------HHHHHHHHhhhhhhhhcCCC
Q 038749 578 APLMTEDMHEERLHAVEAFSNSFE--------FSA------------QLERDILLSDMSAFKAANPD 624 (934)
Q Consensus 578 ~~p~TeD~l~e~~~~l~~lg~~~~--------~r~------------~mqs~~LlSDM~aFKaANpg 624 (934)
-||||+++|.+|-+-|.+-|=... .|. --..+..|+..++.++++|+
T Consensus 11 LP~LtdeqI~~QV~yll~qGw~~~iE~~d~~~~r~~yW~mwklPmf~~~d~~~Vl~Ele~C~k~~p~ 77 (138)
T d1bwvs_ 11 LPDLTDEQIKKQIDYMISKKLAIGIEYTNDIHPRNAYWEIWGLPLFDVTDPAAVLFEINACRKARSN 77 (138)
T ss_dssp SCCCCHHHHHHHHHHHHHTTCEEEEEEESCCCTTCCCCEECSSCBCSCCCHHHHHHHHHHHHHHCTT
T ss_pred CCCCCHHHHHHHHHHHHcCCCEeeeEeccccccccchhhccccccccCCCHHHHHHHHHHHHHHCCc
Confidence 589999999999999986553210 000 00135678888888888888
No 10
>d1m1eb_ a.161.1.1 (B:) beta-catenin-interacting protein ICAT {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.44 E-value=68 Score=25.69 Aligned_cols=31 Identities=13% Similarity=0.171 Sum_probs=22.3
Q ss_pred HHHHHHcCCchHHHHHHHHHHHHhhhhhhhhcCCCcc---hhhhh
Q 038749 590 LHAVEAFSNSFEFSAQLERDILLSDMSAFKAANPDAV---FEDFI 631 (934)
Q Consensus 590 ~~~l~~lg~~~~~r~~mqs~~LlSDM~aFKaANpg~~---~eDFV 631 (934)
.-+|.+||. .|--+=++|.++|.|++ |..|=
T Consensus 15 L~aLrKLGe-----------kLtp~ee~FL~~na~a~~~~lsqfe 48 (70)
T d1m1eb_ 15 LLMLRKMGS-----------NLTASEEEFLRTYAGVVNSQLSQLP 48 (70)
T ss_dssp HHHHHHTTC-----------CCCHHHHHHHHHTHHHHHHHHTC--
T ss_pred HHHHHHhcc-----------cCChhHHHHHHHhhHHHHHHHHhhh
Confidence 345567774 66677789999999998 77774
Done!