Query 038751
Match_columns 915
No_of_seqs 447 out of 3941
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 02:57:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038751.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038751hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 8.2E-87 1.8E-91 785.4 46.1 816 3-881 2-856 (889)
2 PLN03210 Resistant to P. syrin 100.0 6.2E-59 1.3E-63 581.3 45.0 638 168-885 181-907 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 1.9E-43 4.2E-48 379.8 14.2 279 176-461 1-286 (287)
4 PLN00113 leucine-rich repeat r 99.8 7.3E-20 1.6E-24 230.4 11.3 313 533-882 140-486 (968)
5 PLN00113 leucine-rich repeat r 99.8 1.1E-19 2.4E-24 228.8 11.9 310 533-882 118-439 (968)
6 PLN03210 Resistant to P. syrin 99.7 1.1E-17 2.4E-22 210.5 15.9 317 533-885 589-944 (1153)
7 KOG0444 Cytoskeletal regulator 99.7 5.3E-20 1.1E-24 196.7 -6.9 291 533-886 78-377 (1255)
8 KOG4194 Membrane glycoprotein 99.6 8.2E-17 1.8E-21 171.8 1.9 328 533-883 78-428 (873)
9 KOG0472 Leucine-rich repeat pr 99.6 7.7E-18 1.7E-22 172.0 -6.7 187 533-762 114-306 (565)
10 KOG4194 Membrane glycoprotein 99.6 2.3E-16 5.1E-21 168.4 0.9 303 533-879 125-447 (873)
11 KOG0444 Cytoskeletal regulator 99.6 7.4E-17 1.6E-21 172.8 -5.9 261 533-833 103-375 (1255)
12 PRK04841 transcriptional regul 99.5 1.6E-12 3.5E-17 163.1 27.3 294 170-509 13-332 (903)
13 KOG0472 Leucine-rich repeat pr 99.5 3.1E-17 6.7E-22 167.7 -13.1 218 536-796 94-316 (565)
14 KOG0618 Serine/threonine phosp 99.5 5.6E-16 1.2E-20 174.5 -8.9 244 533-795 45-328 (1081)
15 PRK00411 cdc6 cell division co 99.4 8E-11 1.7E-15 132.5 30.5 324 167-505 26-381 (394)
16 KOG4658 Apoptotic ATPase [Sign 99.4 1.4E-13 3E-18 164.5 4.4 286 533-866 545-866 (889)
17 COG2909 MalT ATP-dependent tra 99.3 7.5E-11 1.6E-15 133.6 20.4 292 180-511 24-340 (894)
18 TIGR02928 orc1/cdc6 family rep 99.3 1.4E-09 3E-14 121.2 29.6 303 169-487 13-352 (365)
19 PRK15387 E3 ubiquitin-protein 99.3 6.8E-12 1.5E-16 146.8 10.9 74 802-883 384-457 (788)
20 TIGR03015 pepcterm_ATPase puta 99.3 5.5E-10 1.2E-14 118.7 21.5 182 198-384 43-242 (269)
21 KOG0618 Serine/threonine phosp 99.2 7.3E-13 1.6E-17 149.8 -3.4 328 533-884 68-489 (1081)
22 PF01637 Arch_ATPase: Archaeal 99.1 1.8E-10 4E-15 119.6 11.4 195 173-379 1-233 (234)
23 PRK00080 ruvB Holliday junctio 99.1 4.3E-10 9.4E-15 122.4 14.2 278 170-486 24-311 (328)
24 TIGR00635 ruvB Holliday juncti 99.1 8.1E-10 1.7E-14 119.6 13.7 277 171-486 4-290 (305)
25 COG3899 Predicted ATPase [Gene 99.0 6.2E-09 1.3E-13 125.6 19.5 313 172-508 1-385 (849)
26 PTZ00112 origin recognition co 99.0 9.9E-08 2.1E-12 109.5 26.9 301 170-485 754-1086(1164)
27 PRK15370 E3 ubiquitin-protein 99.0 3.2E-10 7E-15 133.8 6.5 119 731-883 305-427 (754)
28 PRK15387 E3 ubiquitin-protein 99.0 1.5E-09 3.2E-14 127.5 10.6 84 533-635 222-310 (788)
29 PF05729 NACHT: NACHT domain 99.0 6.2E-09 1.3E-13 101.7 12.4 142 199-346 1-162 (166)
30 KOG0617 Ras suppressor protein 99.0 2.2E-11 4.8E-16 110.8 -4.6 82 551-639 28-114 (264)
31 COG2256 MGS1 ATPase related to 98.9 1.8E-08 3.9E-13 105.4 15.0 173 168-376 27-208 (436)
32 KOG0617 Ras suppressor protein 98.8 8.8E-11 1.9E-15 107.0 -5.1 162 683-869 29-194 (264)
33 PRK06893 DNA replication initi 98.8 7.2E-08 1.6E-12 98.9 13.1 153 198-381 39-204 (229)
34 PRK15370 E3 ubiquitin-protein 98.7 9.1E-09 2E-13 121.7 4.3 88 533-635 199-291 (754)
35 PRK13342 recombination factor 98.7 2.5E-07 5.5E-12 103.9 15.4 178 171-382 12-198 (413)
36 PRK07003 DNA polymerase III su 98.6 1.8E-06 4E-11 99.0 20.0 198 171-384 16-225 (830)
37 TIGR03420 DnaA_homol_Hda DnaA 98.6 7.9E-07 1.7E-11 91.7 15.1 171 176-383 22-204 (226)
38 PF13401 AAA_22: AAA domain; P 98.6 9.4E-08 2E-12 89.2 7.0 118 197-316 3-125 (131)
39 PRK05564 DNA polymerase III su 98.6 1.4E-06 3E-11 94.3 16.9 180 171-380 4-190 (313)
40 PRK14961 DNA polymerase III su 98.5 3.3E-06 7.3E-11 93.0 19.0 192 171-379 16-219 (363)
41 COG1474 CDC6 Cdc6-related prot 98.5 7.4E-06 1.6E-10 89.2 21.2 210 170-383 16-241 (366)
42 PRK14949 DNA polymerase III su 98.5 2.2E-06 4.8E-11 100.4 17.4 194 171-380 16-220 (944)
43 PF05496 RuvB_N: Holliday junc 98.5 1.2E-06 2.6E-11 86.1 12.8 182 171-385 24-226 (233)
44 KOG2028 ATPase related to the 98.5 5.9E-07 1.3E-11 92.1 10.7 158 197-376 161-332 (554)
45 PRK14960 DNA polymerase III su 98.5 2.7E-06 5.9E-11 96.7 17.0 194 171-380 15-219 (702)
46 PRK04195 replication factor C 98.5 1.3E-05 2.9E-10 91.9 22.6 247 171-459 14-271 (482)
47 cd00116 LRR_RI Leucine-rich re 98.5 9.3E-09 2E-13 112.4 -3.6 167 687-886 108-293 (319)
48 PRK14963 DNA polymerase III su 98.5 6.8E-07 1.5E-11 101.6 11.1 190 171-377 14-214 (504)
49 PRK12402 replication factor C 98.5 3.5E-06 7.7E-11 92.8 16.4 198 171-379 15-225 (337)
50 PF13191 AAA_16: AAA ATPase do 98.5 2.5E-07 5.5E-12 92.1 6.4 51 172-225 1-51 (185)
51 TIGR02903 spore_lon_C ATP-depe 98.4 5.8E-06 1.3E-10 96.9 17.8 203 171-383 154-398 (615)
52 cd00009 AAA The AAA+ (ATPases 98.4 1.7E-06 3.7E-11 82.4 11.0 125 174-318 1-131 (151)
53 PF13173 AAA_14: AAA domain 98.4 1.2E-06 2.5E-11 81.1 9.4 120 198-339 2-127 (128)
54 PRK12323 DNA polymerase III su 98.4 4.6E-06 1E-10 94.6 15.8 199 171-380 16-225 (700)
55 PRK14957 DNA polymerase III su 98.4 8.1E-06 1.8E-10 93.0 17.3 187 171-384 16-225 (546)
56 PTZ00202 tuzin; Provisional 98.4 1.5E-05 3.2E-10 85.4 17.9 169 166-346 257-433 (550)
57 KOG3207 Beta-tubulin folding c 98.4 1.1E-07 2.3E-12 100.1 1.3 183 682-883 141-338 (505)
58 PRK07994 DNA polymerase III su 98.4 7.1E-06 1.5E-10 94.8 16.2 194 171-380 16-220 (647)
59 PRK06645 DNA polymerase III su 98.4 1.2E-05 2.6E-10 91.0 17.7 194 171-377 21-226 (507)
60 PLN03025 replication factor C 98.4 8.5E-06 1.8E-10 88.4 15.8 183 171-378 13-198 (319)
61 cd00116 LRR_RI Leucine-rich re 98.3 2.2E-08 4.8E-13 109.5 -4.7 147 680-858 158-318 (319)
62 PRK08727 hypothetical protein; 98.3 1.2E-05 2.6E-10 82.7 15.8 148 199-377 42-201 (233)
63 PRK14962 DNA polymerase III su 98.3 1.2E-05 2.6E-10 90.7 17.1 198 171-385 14-224 (472)
64 cd01128 rho_factor Transcripti 98.3 8.5E-07 1.8E-11 91.1 7.2 89 198-287 16-113 (249)
65 PRK00440 rfc replication facto 98.3 1.5E-05 3.3E-10 87.0 17.6 182 171-379 17-202 (319)
66 PRK14956 DNA polymerase III su 98.3 9.6E-06 2.1E-10 89.8 15.8 193 171-379 18-221 (484)
67 PRK13341 recombination factor 98.3 7.6E-06 1.7E-10 96.7 14.8 170 171-376 28-213 (725)
68 KOG4237 Extracellular matrix p 98.3 3E-08 6.5E-13 102.7 -4.6 99 533-638 67-175 (498)
69 PRK07471 DNA polymerase III su 98.3 2.9E-05 6.3E-10 84.8 18.1 197 170-380 18-238 (365)
70 PRK14951 DNA polymerase III su 98.3 1.6E-05 3.5E-10 91.8 16.8 197 171-380 16-225 (618)
71 PRK14958 DNA polymerase III su 98.3 1.6E-05 3.5E-10 90.7 16.5 193 171-379 16-219 (509)
72 PRK07940 DNA polymerase III su 98.3 2.7E-05 5.8E-10 85.8 17.5 190 171-380 5-213 (394)
73 TIGR02397 dnaX_nterm DNA polym 98.3 4.1E-05 8.9E-10 85.0 19.2 182 171-380 14-218 (355)
74 PRK08084 DNA replication initi 98.3 2.2E-05 4.8E-10 80.9 15.7 153 198-381 45-210 (235)
75 PRK05896 DNA polymerase III su 98.3 2.4E-05 5.2E-10 89.2 17.2 196 171-382 16-223 (605)
76 PRK14964 DNA polymerase III su 98.3 2.4E-05 5.1E-10 87.9 17.0 181 171-377 13-214 (491)
77 PRK09112 DNA polymerase III su 98.3 2.8E-05 6.1E-10 84.4 17.2 197 170-381 22-241 (351)
78 PRK08691 DNA polymerase III su 98.3 1.5E-05 3.3E-10 91.7 15.7 194 171-380 16-220 (709)
79 PRK08903 DnaA regulatory inact 98.3 2.1E-05 4.6E-10 81.0 15.5 152 198-384 42-203 (227)
80 TIGR00678 holB DNA polymerase 98.2 3.1E-05 6.7E-10 77.1 15.8 91 276-376 95-187 (188)
81 PRK09087 hypothetical protein; 98.2 1.9E-05 4.1E-10 80.5 14.1 141 198-379 44-194 (226)
82 PF14580 LRR_9: Leucine-rich r 98.2 3.9E-07 8.5E-12 87.7 1.5 131 728-883 17-152 (175)
83 PRK14955 DNA polymerase III su 98.2 2.2E-05 4.8E-10 87.6 15.3 199 171-378 16-226 (397)
84 KOG2227 Pre-initiation complex 98.2 4.3E-05 9.3E-10 81.9 16.3 215 168-384 147-376 (529)
85 PRK09376 rho transcription ter 98.2 2.8E-06 6E-11 90.7 7.5 101 181-287 157-266 (416)
86 KOG4237 Extracellular matrix p 98.2 2E-07 4.3E-12 96.7 -1.2 83 726-810 270-356 (498)
87 PRK14969 DNA polymerase III su 98.2 3.7E-05 8E-10 88.4 16.4 184 171-384 16-225 (527)
88 PRK05642 DNA replication initi 98.2 4.9E-05 1.1E-09 78.2 15.7 153 199-382 46-210 (234)
89 PRK11331 5-methylcytosine-spec 98.1 1.2E-05 2.7E-10 87.9 11.1 120 171-302 175-298 (459)
90 PRK14952 DNA polymerase III su 98.1 9.8E-05 2.1E-09 85.1 18.2 199 171-385 13-225 (584)
91 TIGR01242 26Sp45 26S proteasom 98.1 2.5E-05 5.4E-10 86.5 12.9 182 168-374 119-328 (364)
92 PRK09111 DNA polymerase III su 98.1 6.8E-05 1.5E-09 86.9 16.8 197 171-380 24-233 (598)
93 PF14516 AAA_35: AAA-like doma 98.1 0.00055 1.2E-08 74.4 22.5 202 169-387 9-246 (331)
94 PRK14959 DNA polymerase III su 98.1 8.8E-05 1.9E-09 85.2 16.9 198 171-384 16-225 (624)
95 COG2255 RuvB Holliday junction 98.1 0.00013 2.9E-09 73.3 15.9 182 171-385 26-228 (332)
96 PRK14087 dnaA chromosomal repl 98.1 9.4E-05 2E-09 83.5 17.0 169 198-382 141-321 (450)
97 KOG1259 Nischarin, modulator o 98.1 6.6E-07 1.4E-11 89.3 -0.3 109 725-858 302-410 (490)
98 PF00308 Bac_DnaA: Bacterial d 98.1 9.8E-05 2.1E-09 75.0 15.3 184 174-380 12-208 (219)
99 PRK14954 DNA polymerase III su 98.1 0.00011 2.4E-09 85.3 17.4 203 171-382 16-231 (620)
100 PRK07133 DNA polymerase III su 98.0 0.00018 3.8E-09 84.0 18.5 194 171-381 18-221 (725)
101 PRK14950 DNA polymerase III su 98.0 7.2E-05 1.6E-09 87.6 15.6 194 171-379 16-220 (585)
102 PRK07764 DNA polymerase III su 98.0 0.00013 2.7E-09 87.7 17.7 198 171-384 15-226 (824)
103 PRK14970 DNA polymerase III su 98.0 0.00017 3.6E-09 80.2 17.8 184 171-383 17-213 (367)
104 KOG3207 Beta-tubulin folding c 98.0 1.6E-06 3.6E-11 91.4 0.9 114 726-855 218-334 (505)
105 PF05621 TniB: Bacterial TniB 98.0 0.00019 4.1E-09 74.3 15.8 202 172-378 35-259 (302)
106 PRK14953 DNA polymerase III su 98.0 0.0003 6.5E-09 79.9 19.1 183 171-380 16-220 (486)
107 TIGR00767 rho transcription te 98.0 1.3E-05 2.9E-10 86.1 7.6 89 198-287 168-265 (415)
108 PRK08451 DNA polymerase III su 98.0 0.00031 6.6E-09 79.8 18.3 194 171-380 14-218 (535)
109 KOG1259 Nischarin, modulator o 98.0 1.4E-06 2.9E-11 87.2 -0.5 111 680-831 300-410 (490)
110 CHL00181 cbbX CbbX; Provisiona 97.9 0.00053 1.1E-08 72.6 18.5 135 199-349 60-211 (287)
111 KOG0989 Replication factor C, 97.9 6.3E-05 1.4E-09 76.4 10.8 190 170-380 35-231 (346)
112 COG3903 Predicted ATPase [Gene 97.9 1.1E-05 2.4E-10 85.5 5.5 292 197-509 13-314 (414)
113 PRK14971 DNA polymerase III su 97.9 0.00036 7.7E-09 81.7 18.1 176 171-377 17-219 (614)
114 PRK14948 DNA polymerase III su 97.9 0.00042 9E-09 81.1 18.6 196 171-380 16-222 (620)
115 COG4886 Leucine-rich repeat (L 97.9 6.4E-06 1.4E-10 92.9 3.6 174 551-789 111-290 (394)
116 PF05673 DUF815: Protein of un 97.9 0.00019 4.1E-09 71.9 13.4 123 168-317 24-151 (249)
117 PRK15386 type III secretion pr 97.9 4.1E-05 8.9E-10 82.9 9.4 141 723-881 45-187 (426)
118 KOG0532 Leucine-rich repeat (L 97.9 3.6E-07 7.7E-12 99.2 -6.2 149 727-883 95-246 (722)
119 PRK06305 DNA polymerase III su 97.9 0.00043 9.3E-09 78.2 17.6 183 171-381 17-224 (451)
120 TIGR03345 VI_ClpV1 type VI sec 97.9 0.00017 3.6E-09 87.8 15.3 154 171-346 187-362 (852)
121 KOG2543 Origin recognition com 97.9 0.00081 1.8E-08 70.6 17.8 167 170-346 5-192 (438)
122 TIGR02881 spore_V_K stage V sp 97.9 0.00021 4.6E-09 75.1 14.1 162 172-349 7-193 (261)
123 KOG0532 Leucine-rich repeat (L 97.9 4.7E-07 1E-11 98.3 -6.2 96 535-638 77-177 (722)
124 PF14580 LRR_9: Leucine-rich r 97.8 6.8E-06 1.5E-10 79.2 1.9 126 750-910 16-147 (175)
125 TIGR00362 DnaA chromosomal rep 97.8 0.00068 1.5E-08 76.3 18.2 159 198-378 136-308 (405)
126 PRK06647 DNA polymerase III su 97.8 0.00066 1.4E-08 78.5 17.9 193 171-379 16-219 (563)
127 PRK12422 chromosomal replicati 97.8 0.00044 9.4E-09 77.8 16.1 153 198-372 141-305 (445)
128 PHA02544 44 clamp loader, smal 97.8 0.00029 6.2E-09 76.7 14.4 149 170-345 20-171 (316)
129 PRK03992 proteasome-activating 97.8 0.00015 3.3E-09 80.5 12.4 181 169-374 129-337 (389)
130 PRK14965 DNA polymerase III su 97.8 0.00047 1E-08 80.4 16.8 198 171-384 16-225 (576)
131 TIGR02880 cbbX_cfxQ probable R 97.8 0.00034 7.4E-09 74.1 14.2 133 200-348 60-209 (284)
132 KOG2120 SCF ubiquitin ligase, 97.8 3.5E-07 7.5E-12 91.4 -8.2 131 663-831 238-374 (419)
133 PRK07399 DNA polymerase III su 97.8 0.0019 4E-08 69.3 19.4 196 171-380 4-221 (314)
134 PRK06620 hypothetical protein; 97.8 0.00031 6.8E-09 70.9 12.8 135 199-378 45-187 (214)
135 PRK05707 DNA polymerase III su 97.8 0.00059 1.3E-08 73.5 15.6 97 276-380 105-203 (328)
136 PRK14088 dnaA chromosomal repl 97.8 0.00055 1.2E-08 77.3 16.0 159 198-377 130-302 (440)
137 COG0542 clpA ATP-binding subun 97.7 0.00079 1.7E-08 78.6 16.6 133 172-315 492-642 (786)
138 PRK14086 dnaA chromosomal repl 97.7 0.0012 2.5E-08 75.8 17.7 157 199-377 315-485 (617)
139 PRK05563 DNA polymerase III su 97.7 0.0014 3E-08 76.2 18.7 192 171-378 16-218 (559)
140 KOG4341 F-box protein containi 97.7 4.9E-06 1.1E-10 87.4 -1.9 158 727-908 291-457 (483)
141 TIGR02639 ClpA ATP-dependent C 97.7 0.00037 8E-09 84.2 13.6 155 171-347 182-358 (731)
142 PRK00149 dnaA chromosomal repl 97.7 0.0013 2.7E-08 75.2 17.2 158 198-377 148-319 (450)
143 CHL00095 clpC Clp protease ATP 97.7 0.00047 1E-08 84.4 14.5 154 171-345 179-352 (821)
144 PF00004 AAA: ATPase family as 97.6 0.00025 5.4E-09 65.9 9.1 96 201-316 1-111 (132)
145 PRK08116 hypothetical protein; 97.6 0.00029 6.4E-09 73.8 10.0 104 199-317 115-221 (268)
146 COG4886 Leucine-rich repeat (L 97.6 2.7E-05 5.8E-10 87.8 2.4 146 730-883 140-289 (394)
147 COG0593 DnaA ATPase involved i 97.6 0.0027 5.9E-08 69.2 17.0 164 197-377 112-287 (408)
148 TIGR03689 pup_AAA proteasome A 97.5 0.002 4.3E-08 73.0 16.1 165 171-347 182-378 (512)
149 COG3267 ExeA Type II secretory 97.5 0.0045 9.7E-08 61.9 16.4 183 197-384 50-249 (269)
150 PRK10787 DNA-binding ATP-depen 97.5 0.001 2.3E-08 80.0 14.3 166 170-347 321-506 (784)
151 PRK08769 DNA polymerase III su 97.5 0.0024 5.3E-08 68.2 15.4 95 276-380 112-208 (319)
152 PRK15386 type III secretion pr 97.5 0.00017 3.8E-09 78.1 6.1 117 751-884 50-169 (426)
153 TIGR00763 lon ATP-dependent pr 97.5 0.0045 9.8E-08 75.4 19.0 165 171-347 320-505 (775)
154 PRK06090 DNA polymerase III su 97.5 0.0039 8.4E-08 66.5 16.1 93 276-380 107-201 (319)
155 KOG2982 Uncharacterized conser 97.4 9.7E-05 2.1E-09 74.3 3.7 202 685-909 69-285 (418)
156 PRK10536 hypothetical protein; 97.4 0.0024 5.3E-08 64.9 13.5 134 171-316 55-212 (262)
157 TIGR00602 rad24 checkpoint pro 97.4 0.00071 1.5E-08 78.6 10.9 52 169-221 82-133 (637)
158 KOG1514 Origin recognition com 97.4 0.0052 1.1E-07 69.6 17.1 209 170-385 395-626 (767)
159 PF13177 DNA_pol3_delta2: DNA 97.4 0.002 4.3E-08 62.1 12.3 137 175-335 1-162 (162)
160 smart00382 AAA ATPases associa 97.4 0.00088 1.9E-08 62.9 9.8 87 199-289 3-90 (148)
161 PRK08058 DNA polymerase III su 97.4 0.0029 6.3E-08 68.7 14.8 163 172-346 6-181 (329)
162 TIGR03346 chaperone_ClpB ATP-d 97.3 0.0015 3.3E-08 80.2 13.2 156 171-346 173-348 (852)
163 PF13855 LRR_8: Leucine rich r 97.3 0.00025 5.5E-09 55.7 4.2 59 820-882 1-60 (61)
164 PRK11034 clpA ATP-dependent Cl 97.3 0.0012 2.7E-08 78.7 11.8 154 171-346 186-361 (758)
165 PRK10865 protein disaggregatio 97.3 0.002 4.2E-08 78.9 13.8 138 171-316 568-720 (857)
166 TIGR03346 chaperone_ClpB ATP-d 97.3 0.0027 5.9E-08 78.1 15.0 135 171-316 565-717 (852)
167 PRK06871 DNA polymerase III su 97.3 0.0083 1.8E-07 64.3 16.7 176 180-378 11-201 (325)
168 PRK10865 protein disaggregatio 97.3 0.002 4.2E-08 78.9 13.5 45 171-221 178-222 (857)
169 PRK12377 putative replication 97.3 0.00059 1.3E-08 70.1 7.7 102 198-316 101-205 (248)
170 PTZ00361 26 proteosome regulat 97.3 0.0011 2.4E-08 73.9 10.0 158 171-348 183-368 (438)
171 KOG2120 SCF ubiquitin ligase, 97.3 1E-05 2.3E-10 81.1 -5.3 161 682-882 205-374 (419)
172 TIGR02639 ClpA ATP-dependent C 97.3 0.0026 5.6E-08 77.1 13.7 123 171-304 454-580 (731)
173 TIGR02640 gas_vesic_GvpN gas v 97.2 0.0091 2E-07 62.7 15.9 140 200-346 23-197 (262)
174 PTZ00454 26S protease regulato 97.2 0.0048 1E-07 68.4 14.4 159 169-347 143-329 (398)
175 COG0466 Lon ATP-dependent Lon 97.2 0.0077 1.7E-07 68.7 15.6 166 170-347 322-508 (782)
176 PF13855 LRR_8: Leucine rich r 97.2 0.00026 5.7E-09 55.6 3.0 57 730-787 1-60 (61)
177 PRK08118 topology modulation p 97.2 0.00017 3.7E-09 69.9 1.9 35 199-233 2-37 (167)
178 KOG1909 Ran GTPase-activating 97.2 1.7E-05 3.6E-10 81.7 -5.3 146 683-858 153-309 (382)
179 CHL00176 ftsH cell division pr 97.2 0.004 8.7E-08 73.0 13.5 179 170-373 182-387 (638)
180 PF01695 IstB_IS21: IstB-like 97.1 0.00036 7.7E-09 68.3 3.8 100 198-316 47-149 (178)
181 PRK08181 transposase; Validate 97.1 0.002 4.2E-08 67.2 9.3 101 199-317 107-209 (269)
182 COG1373 Predicted ATPase (AAA+ 97.1 0.01 2.3E-07 66.0 15.5 147 200-379 39-191 (398)
183 PRK06964 DNA polymerase III su 97.1 0.014 3E-07 63.0 15.8 93 276-380 131-225 (342)
184 PRK13531 regulatory ATPase Rav 97.1 0.0015 3.3E-08 72.5 8.5 152 172-346 21-193 (498)
185 PRK07993 DNA polymerase III su 97.1 0.019 4.1E-07 62.2 16.9 181 179-380 10-204 (334)
186 TIGR03345 VI_ClpV1 type VI sec 97.1 0.002 4.3E-08 78.7 10.1 136 171-316 566-718 (852)
187 KOG4341 F-box protein containi 97.1 2.5E-05 5.4E-10 82.3 -5.5 120 751-889 292-419 (483)
188 TIGR01241 FtsH_fam ATP-depende 97.0 0.0083 1.8E-07 69.4 14.5 180 170-374 54-260 (495)
189 PRK06921 hypothetical protein; 97.0 0.0032 6.9E-08 65.9 10.0 99 198-316 117-224 (266)
190 KOG1909 Ran GTPase-activating 97.0 0.00022 4.7E-09 73.8 1.1 219 533-787 30-281 (382)
191 PF02562 PhoH: PhoH-like prote 97.0 0.0014 3E-08 64.9 6.5 131 174-316 3-155 (205)
192 PRK08939 primosomal protein Dn 97.0 0.004 8.6E-08 66.5 10.3 122 175-316 135-260 (306)
193 PRK06526 transposase; Provisio 97.0 0.0016 3.6E-08 67.4 7.0 100 199-317 99-201 (254)
194 PF04665 Pox_A32: Poxvirus A32 97.0 0.0014 3E-08 66.4 6.2 35 200-236 15-49 (241)
195 COG2812 DnaX DNA polymerase II 97.0 0.0031 6.7E-08 70.9 9.6 186 171-375 16-215 (515)
196 COG1484 DnaC DNA replication p 97.0 0.0017 3.7E-08 67.4 6.9 82 198-296 105-186 (254)
197 PRK07261 topology modulation p 97.0 0.0022 4.8E-08 62.4 7.4 34 200-233 2-36 (171)
198 PHA00729 NTP-binding motif con 96.9 0.0065 1.4E-07 60.9 10.3 25 197-221 16-40 (226)
199 PLN03150 hypothetical protein; 96.9 0.00068 1.5E-08 80.4 4.0 79 534-617 419-498 (623)
200 PRK07952 DNA replication prote 96.9 0.0058 1.3E-07 62.7 10.1 103 198-316 99-204 (244)
201 CHL00095 clpC Clp protease ATP 96.9 0.0043 9.2E-08 76.1 10.5 138 171-316 509-661 (821)
202 COG2607 Predicted ATPase (AAA+ 96.8 0.054 1.2E-06 53.7 15.6 108 170-304 59-167 (287)
203 PRK11034 clpA ATP-dependent Cl 96.8 0.01 2.2E-07 71.1 12.8 133 172-315 459-606 (758)
204 smart00763 AAA_PrkA PrkA AAA d 96.8 0.0012 2.6E-08 70.6 4.6 50 172-221 52-101 (361)
205 PRK09183 transposase/IS protei 96.8 0.0054 1.2E-07 64.0 9.3 101 199-317 103-206 (259)
206 KOG2004 Mitochondrial ATP-depe 96.8 0.021 4.5E-07 65.0 13.7 166 170-347 410-596 (906)
207 PRK04132 replication factor C 96.7 0.035 7.5E-07 66.7 16.4 155 206-380 574-731 (846)
208 KOG0991 Replication factor C, 96.7 0.01 2.2E-07 58.0 9.7 149 171-347 27-185 (333)
209 PLN03150 hypothetical protein; 96.7 0.00094 2E-08 79.2 3.4 74 723-796 435-510 (623)
210 TIGR02237 recomb_radB DNA repa 96.7 0.0052 1.1E-07 62.3 8.3 48 197-247 11-58 (209)
211 PRK12608 transcription termina 96.7 0.007 1.5E-07 65.2 9.5 101 179-286 119-229 (380)
212 PRK04296 thymidine kinase; Pro 96.7 0.0038 8.3E-08 62.0 6.7 112 199-317 3-116 (190)
213 TIGR02902 spore_lonB ATP-depen 96.7 0.0071 1.5E-07 70.1 9.9 44 171-220 65-108 (531)
214 PF00158 Sigma54_activat: Sigm 96.6 0.0059 1.3E-07 59.0 7.6 132 173-317 1-144 (168)
215 COG0470 HolB ATPase involved i 96.6 0.011 2.3E-07 64.7 10.5 145 172-336 2-170 (325)
216 PRK06835 DNA replication prote 96.6 0.0047 1E-07 66.5 7.3 102 199-316 184-288 (329)
217 PRK05541 adenylylsulfate kinas 96.6 0.0091 2E-07 58.6 8.9 36 197-234 6-41 (176)
218 PRK09361 radB DNA repair and r 96.6 0.0066 1.4E-07 62.4 8.2 46 197-245 22-67 (225)
219 TIGR01243 CDC48 AAA family ATP 96.6 0.017 3.6E-07 70.3 12.9 182 170-376 177-383 (733)
220 PF07693 KAP_NTPase: KAP famil 96.6 0.095 2.1E-06 57.2 17.6 168 176-346 1-262 (325)
221 COG1875 NYN ribonuclease and A 96.6 0.0058 1.3E-07 64.0 7.3 135 173-316 226-387 (436)
222 PRK13695 putative NTPase; Prov 96.6 0.0031 6.7E-08 61.8 5.1 34 200-234 2-35 (174)
223 PRK11889 flhF flagellar biosyn 96.5 0.023 4.9E-07 61.5 11.7 104 197-302 240-347 (436)
224 KOG2228 Origin recognition com 96.5 0.04 8.6E-07 57.3 12.9 172 171-347 24-219 (408)
225 COG1222 RPT1 ATP-dependent 26S 96.5 0.061 1.3E-06 56.6 14.3 178 171-374 151-357 (406)
226 PF12799 LRR_4: Leucine Rich r 96.5 0.0027 5.9E-08 45.7 3.3 37 556-598 1-37 (44)
227 PRK08699 DNA polymerase III su 96.5 0.039 8.4E-07 59.6 13.7 71 276-346 112-184 (325)
228 PF08423 Rad51: Rad51; InterP 96.5 0.016 3.5E-07 60.4 10.4 89 197-286 37-142 (256)
229 cd01123 Rad51_DMC1_radA Rad51_ 96.5 0.015 3.2E-07 60.3 9.9 89 197-286 18-124 (235)
230 KOG0741 AAA+-type ATPase [Post 96.5 0.067 1.4E-06 58.8 14.7 149 195-370 535-704 (744)
231 PF07728 AAA_5: AAA domain (dy 96.5 0.0014 3.1E-08 61.5 2.1 89 201-302 2-90 (139)
232 KOG1644 U2-associated snRNP A' 96.5 0.0043 9.3E-08 59.5 5.1 126 733-883 22-152 (233)
233 PF13207 AAA_17: AAA domain; P 96.4 0.0025 5.4E-08 58.2 3.1 22 200-221 1-22 (121)
234 PF14532 Sigma54_activ_2: Sigm 96.4 0.0038 8.2E-08 58.5 4.3 108 174-317 1-110 (138)
235 COG2884 FtsE Predicted ATPase 96.4 0.022 4.7E-07 54.3 9.1 123 198-323 28-203 (223)
236 COG1223 Predicted ATPase (AAA+ 96.4 0.037 8.1E-07 55.2 11.1 158 170-348 120-298 (368)
237 PF10443 RNA12: RNA12 protein; 96.3 0.031 6.7E-07 60.9 11.4 203 176-391 1-289 (431)
238 cd01393 recA_like RecA is a b 96.3 0.021 4.5E-07 58.7 10.0 87 197-286 18-123 (226)
239 cd03247 ABCC_cytochrome_bd The 96.3 0.026 5.6E-07 55.5 10.1 117 199-321 29-161 (178)
240 cd00561 CobA_CobO_BtuR ATP:cor 96.3 0.024 5.2E-07 53.7 9.2 117 199-318 3-139 (159)
241 KOG2035 Replication factor C, 96.3 0.018 4E-07 58.0 8.6 207 173-401 15-259 (351)
242 cd01394 radB RadB. The archaea 96.3 0.014 3E-07 59.7 8.1 43 197-241 18-60 (218)
243 KOG1051 Chaperone HSP104 and r 96.3 0.02 4.4E-07 68.2 10.3 122 172-304 563-687 (898)
244 cd03214 ABC_Iron-Siderophores_ 96.2 0.044 9.5E-07 54.0 11.3 119 198-320 25-161 (180)
245 KOG0531 Protein phosphatase 1, 96.2 0.0014 3E-08 74.2 0.5 60 726-787 114-173 (414)
246 cd01120 RecA-like_NTPases RecA 96.2 0.022 4.7E-07 54.9 8.9 40 200-241 1-40 (165)
247 KOG0735 AAA+-type ATPase [Post 96.2 0.029 6.3E-07 63.7 10.6 131 198-346 431-585 (952)
248 PF12799 LRR_4: Leucine Rich r 96.2 0.0029 6.3E-08 45.5 1.9 33 754-787 2-35 (44)
249 cd03228 ABCC_MRP_Like The MRP 96.2 0.03 6.5E-07 54.6 9.7 118 198-322 28-160 (171)
250 PF07724 AAA_2: AAA domain (Cd 96.2 0.0044 9.4E-08 60.1 3.6 41 197-239 2-43 (171)
251 cd01133 F1-ATPase_beta F1 ATP 96.2 0.02 4.3E-07 59.3 8.6 86 199-286 70-172 (274)
252 COG4608 AppF ABC-type oligopep 96.2 0.039 8.5E-07 56.3 10.4 125 198-325 39-178 (268)
253 PF13671 AAA_33: AAA domain; P 96.2 0.026 5.6E-07 53.2 8.8 21 200-220 1-21 (143)
254 KOG1969 DNA replication checkp 96.1 0.014 3.1E-07 66.5 7.9 88 195-302 323-412 (877)
255 PRK15455 PrkA family serine pr 96.1 0.0044 9.6E-08 69.8 3.9 49 172-220 77-125 (644)
256 KOG0733 Nuclear AAA ATPase (VC 96.1 0.026 5.7E-07 63.0 9.6 155 198-374 545-718 (802)
257 CHL00195 ycf46 Ycf46; Provisio 96.1 0.053 1.1E-06 61.7 12.5 159 171-349 228-407 (489)
258 TIGR01243 CDC48 AAA family ATP 96.1 0.09 2E-06 64.0 15.4 180 170-374 452-657 (733)
259 cd03238 ABC_UvrA The excision 96.1 0.033 7.1E-07 54.3 9.4 122 198-331 21-161 (176)
260 TIGR03499 FlhF flagellar biosy 96.1 0.02 4.3E-07 60.7 8.5 87 197-286 193-281 (282)
261 TIGR01650 PD_CobS cobaltochela 96.1 0.17 3.7E-06 53.8 15.3 60 173-245 47-106 (327)
262 PF00448 SRP54: SRP54-type pro 96.1 0.024 5.2E-07 56.4 8.4 88 198-287 1-93 (196)
263 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.0 0.05 1.1E-06 51.3 10.1 105 198-321 26-131 (144)
264 cd03223 ABCD_peroxisomal_ALDP 96.0 0.07 1.5E-06 51.7 11.2 118 198-321 27-152 (166)
265 KOG3665 ZYG-1-like serine/thre 96.0 0.0028 6E-08 75.1 1.6 84 685-787 146-231 (699)
266 COG0542 clpA ATP-binding subun 96.0 0.03 6.5E-07 65.9 9.9 154 171-346 170-345 (786)
267 TIGR02238 recomb_DMC1 meiotic 96.0 0.035 7.5E-07 59.5 9.7 58 197-255 95-156 (313)
268 KOG3665 ZYG-1-like serine/thre 96.0 0.0026 5.6E-08 75.3 1.1 98 533-636 122-229 (699)
269 cd00544 CobU Adenosylcobinamid 96.0 0.021 4.6E-07 55.1 7.3 79 201-286 2-82 (169)
270 COG5238 RNA1 Ran GTPase-activa 95.9 0.0012 2.6E-08 65.9 -1.5 257 533-862 30-317 (388)
271 PRK06696 uridine kinase; Valid 95.9 0.0088 1.9E-07 61.2 4.8 43 176-221 3-45 (223)
272 COG1419 FlhF Flagellar GTP-bin 95.9 0.045 9.7E-07 59.2 10.1 105 197-304 202-310 (407)
273 KOG0733 Nuclear AAA ATPase (VC 95.9 0.029 6.2E-07 62.7 8.8 98 170-287 189-292 (802)
274 KOG0744 AAA+-type ATPase [Post 95.9 0.076 1.6E-06 54.9 11.1 79 198-286 177-259 (423)
275 cd03222 ABC_RNaseL_inhibitor T 95.9 0.054 1.2E-06 52.8 9.7 103 198-321 25-136 (177)
276 PRK14722 flhF flagellar biosyn 95.9 0.025 5.4E-07 61.6 8.0 88 198-287 137-225 (374)
277 cd01131 PilT Pilus retraction 95.9 0.018 3.9E-07 57.6 6.6 111 199-321 2-113 (198)
278 TIGR02012 tigrfam_recA protein 95.9 0.023 5E-07 60.6 7.6 83 197-286 54-142 (321)
279 PF03215 Rad17: Rad17 cell cyc 95.9 0.062 1.3E-06 61.6 11.5 60 171-235 19-78 (519)
280 PRK06762 hypothetical protein; 95.8 0.11 2.3E-06 50.4 11.8 23 198-220 2-24 (166)
281 COG1136 SalX ABC-type antimicr 95.8 0.094 2E-06 52.6 11.3 61 264-324 147-210 (226)
282 KOG0731 AAA+-type ATPase conta 95.8 0.14 2.9E-06 60.1 14.0 184 170-377 310-521 (774)
283 cd03216 ABC_Carb_Monos_I This 95.8 0.042 9.2E-07 53.0 8.7 115 199-320 27-145 (163)
284 cd00983 recA RecA is a bacter 95.8 0.027 5.8E-07 60.1 7.7 83 197-286 54-142 (325)
285 PTZ00494 tuzin-like protein; P 95.8 0.96 2.1E-05 49.4 19.0 168 167-346 367-543 (664)
286 PLN03187 meiotic recombination 95.8 0.035 7.6E-07 60.0 8.7 58 197-255 125-186 (344)
287 PF13604 AAA_30: AAA domain; P 95.8 0.011 2.4E-07 59.0 4.5 23 199-221 19-41 (196)
288 PRK05800 cobU adenosylcobinami 95.8 0.013 2.7E-07 56.9 4.8 80 200-286 3-85 (170)
289 PRK06067 flagellar accessory p 95.8 0.045 9.8E-07 56.5 9.3 86 197-287 24-130 (234)
290 TIGR01817 nifA Nif-specific re 95.7 0.051 1.1E-06 63.7 10.6 134 169-317 194-341 (534)
291 COG0468 RecA RecA/RadA recombi 95.7 0.047 1E-06 56.8 9.1 90 195-286 57-150 (279)
292 cd03246 ABCC_Protease_Secretio 95.7 0.05 1.1E-06 53.2 8.9 116 199-321 29-160 (173)
293 KOG2982 Uncharacterized conser 95.7 0.0054 1.2E-07 62.2 2.0 171 678-877 88-285 (418)
294 PRK09354 recA recombinase A; P 95.7 0.032 6.9E-07 60.0 7.9 83 197-286 59-147 (349)
295 KOG1859 Leucine-rich repeat pr 95.7 0.00029 6.4E-09 79.2 -7.6 87 680-787 202-290 (1096)
296 TIGR02239 recomb_RAD51 DNA rep 95.7 0.058 1.3E-06 58.0 9.8 57 197-254 95-155 (316)
297 PRK05703 flhF flagellar biosyn 95.6 0.079 1.7E-06 59.4 11.1 88 198-287 221-309 (424)
298 PHA02244 ATPase-like protein 95.6 0.055 1.2E-06 58.2 9.2 21 201-221 122-142 (383)
299 COG1618 Predicted nucleotide k 95.6 0.011 2.3E-07 54.8 3.3 24 198-221 5-28 (179)
300 PRK11608 pspF phage shock prot 95.6 0.034 7.3E-07 60.4 7.8 45 172-220 7-51 (326)
301 KOG1859 Leucine-rich repeat pr 95.6 0.00059 1.3E-08 76.9 -5.7 84 681-787 181-265 (1096)
302 PRK07132 DNA polymerase III su 95.6 0.44 9.5E-06 50.7 15.9 152 197-379 17-184 (299)
303 cd03230 ABC_DR_subfamily_A Thi 95.6 0.081 1.8E-06 51.7 9.9 118 198-321 26-159 (173)
304 PRK04301 radA DNA repair and r 95.6 0.082 1.8E-06 57.3 10.8 56 197-253 101-160 (317)
305 PRK12727 flagellar biosynthesi 95.6 0.05 1.1E-06 61.3 9.1 89 197-287 349-438 (559)
306 PRK12724 flagellar biosynthesi 95.5 0.059 1.3E-06 59.2 9.2 24 197-220 222-245 (432)
307 COG0572 Udk Uridine kinase [Nu 95.5 0.025 5.4E-07 56.0 5.8 78 197-278 7-85 (218)
308 COG0714 MoxR-like ATPases [Gen 95.5 0.045 9.7E-07 59.7 8.4 113 172-303 25-138 (329)
309 PRK12723 flagellar biosynthesi 95.5 0.088 1.9E-06 57.9 10.5 90 197-288 173-265 (388)
310 TIGR00708 cobA cob(I)alamin ad 95.5 0.092 2E-06 50.4 9.4 119 198-317 5-140 (173)
311 KOG1644 U2-associated snRNP A' 95.5 0.016 3.4E-07 55.8 4.1 93 722-831 56-151 (233)
312 KOG0730 AAA+-type ATPase [Post 95.5 0.13 2.7E-06 58.6 11.7 174 170-364 433-631 (693)
313 PF00485 PRK: Phosphoribulokin 95.4 0.05 1.1E-06 54.3 8.0 80 200-281 1-87 (194)
314 cd02025 PanK Pantothenate kina 95.4 0.051 1.1E-06 55.2 8.0 74 200-275 1-76 (220)
315 PRK15429 formate hydrogenlyase 95.4 0.055 1.2E-06 65.4 9.6 134 171-317 376-521 (686)
316 PRK05439 pantothenate kinase; 95.4 0.075 1.6E-06 56.5 9.3 81 195-278 83-166 (311)
317 COG0464 SpoVK ATPases of the A 95.4 0.21 4.5E-06 58.0 14.0 158 171-348 242-424 (494)
318 PRK05022 anaerobic nitric oxid 95.4 0.076 1.6E-06 61.6 10.2 132 170-317 186-332 (509)
319 PRK14974 cell division protein 95.4 0.1 2.2E-06 56.4 10.3 89 197-288 139-233 (336)
320 PRK08533 flagellar accessory p 95.3 0.11 2.4E-06 53.3 10.2 48 198-249 24-71 (230)
321 COG1124 DppF ABC-type dipeptid 95.3 0.18 3.8E-06 50.5 10.9 55 269-323 151-208 (252)
322 PLN03186 DNA repair protein RA 95.3 0.09 1.9E-06 56.9 9.7 58 197-255 122-183 (342)
323 cd03115 SRP The signal recogni 95.3 0.11 2.3E-06 50.8 9.6 22 200-221 2-23 (173)
324 KOG1532 GTPase XAB1, interacts 95.3 0.074 1.6E-06 53.5 8.1 28 195-222 16-43 (366)
325 PLN00020 ribulose bisphosphate 95.2 0.038 8.2E-07 59.0 6.4 26 196-221 146-171 (413)
326 COG4618 ArpD ABC-type protease 95.2 0.11 2.4E-06 57.3 10.0 22 199-220 363-384 (580)
327 TIGR02974 phageshock_pspF psp 95.2 0.061 1.3E-06 58.4 8.3 45 173-221 1-45 (329)
328 PTZ00035 Rad51 protein; Provis 95.2 0.12 2.7E-06 56.0 10.6 57 197-254 117-177 (337)
329 TIGR02236 recomb_radA DNA repa 95.2 0.082 1.8E-06 57.2 9.3 56 197-253 94-153 (310)
330 PRK09270 nucleoside triphospha 95.2 0.078 1.7E-06 54.5 8.7 26 196-221 31-56 (229)
331 PRK07667 uridine kinase; Provi 95.2 0.023 5E-07 56.6 4.6 38 180-221 3-40 (193)
332 TIGR00554 panK_bact pantothena 95.2 0.073 1.6E-06 56.1 8.4 80 196-277 60-141 (290)
333 cd03217 ABC_FeS_Assembly ABC-t 95.1 0.092 2E-06 52.7 8.8 119 198-321 26-168 (200)
334 PRK00771 signal recognition pa 95.1 0.1 2.2E-06 58.5 9.7 25 197-221 94-118 (437)
335 PRK12726 flagellar biosynthesi 95.1 0.16 3.5E-06 54.9 10.6 90 197-288 205-296 (407)
336 KOG0734 AAA+-type ATPase conta 95.1 0.042 9E-07 60.4 6.3 53 171-223 304-362 (752)
337 cd01122 GP4d_helicase GP4d_hel 95.1 0.19 4E-06 53.3 11.3 54 198-254 30-83 (271)
338 cd03369 ABCC_NFT1 Domain 2 of 95.0 0.29 6.2E-06 49.4 12.2 53 269-321 135-188 (207)
339 PF13238 AAA_18: AAA domain; P 95.0 0.018 3.8E-07 53.1 2.8 21 201-221 1-21 (129)
340 PTZ00301 uridine kinase; Provi 94.9 0.027 5.8E-07 56.6 4.2 23 198-220 3-25 (210)
341 PF01583 APS_kinase: Adenylyls 94.9 0.031 6.8E-07 52.7 4.3 36 198-235 2-37 (156)
342 TIGR03881 KaiC_arch_4 KaiC dom 94.9 0.15 3.3E-06 52.4 9.9 114 197-315 19-164 (229)
343 PF08298 AAA_PrkA: PrkA AAA do 94.9 0.033 7.2E-07 59.2 4.8 51 170-220 60-110 (358)
344 cd03229 ABC_Class3 This class 94.8 0.093 2E-06 51.5 7.7 24 198-221 26-49 (178)
345 cd00267 ABC_ATPase ABC (ATP-bi 94.8 0.078 1.7E-06 50.8 7.0 116 199-322 26-145 (157)
346 cd01125 repA Hexameric Replica 94.8 0.24 5.3E-06 51.2 11.2 21 200-220 3-23 (239)
347 cd03281 ABC_MSH5_euk MutS5 hom 94.8 0.053 1.1E-06 54.9 6.0 23 198-220 29-51 (213)
348 cd03215 ABC_Carb_Monos_II This 94.8 0.24 5.2E-06 48.8 10.5 23 199-221 27-49 (182)
349 cd02019 NK Nucleoside/nucleoti 94.8 0.02 4.4E-07 46.1 2.3 22 200-221 1-22 (69)
350 TIGR03877 thermo_KaiC_1 KaiC d 94.8 0.19 4.1E-06 51.9 10.2 49 197-249 20-68 (237)
351 PRK06547 hypothetical protein; 94.8 0.036 7.7E-07 53.9 4.4 25 197-221 14-38 (172)
352 PRK10867 signal recognition pa 94.8 0.092 2E-06 58.6 8.2 24 197-220 99-122 (433)
353 PRK05480 uridine/cytidine kina 94.7 0.023 5.1E-07 57.5 3.3 25 197-221 5-29 (209)
354 cd03232 ABC_PDR_domain2 The pl 94.7 0.2 4.2E-06 49.9 9.6 23 198-220 33-55 (192)
355 PRK08233 hypothetical protein; 94.6 0.025 5.4E-07 55.8 3.2 24 198-221 3-26 (182)
356 PRK00889 adenylylsulfate kinas 94.6 0.23 5E-06 48.6 9.9 24 198-221 4-27 (175)
357 TIGR00235 udk uridine kinase. 94.6 0.027 5.8E-07 56.9 3.3 25 197-221 5-29 (207)
358 COG0563 Adk Adenylate kinase a 94.6 0.05 1.1E-06 53.0 5.1 22 200-221 2-23 (178)
359 COG1126 GlnQ ABC-type polar am 94.6 0.34 7.5E-06 47.6 10.5 58 266-323 143-202 (240)
360 TIGR00959 ffh signal recogniti 94.6 0.11 2.4E-06 58.0 8.3 24 197-220 98-121 (428)
361 KOG0531 Protein phosphatase 1, 94.5 0.011 2.5E-07 66.8 0.5 107 722-831 87-197 (414)
362 TIGR00064 ftsY signal recognit 94.5 0.12 2.5E-06 54.4 8.0 88 197-287 71-164 (272)
363 PF00910 RNA_helicase: RNA hel 94.5 0.019 4.2E-07 50.9 1.9 21 201-221 1-21 (107)
364 COG1102 Cmk Cytidylate kinase 94.5 0.079 1.7E-06 49.2 5.7 44 200-256 2-45 (179)
365 KOG0728 26S proteasome regulat 94.5 1 2.3E-05 44.8 13.6 154 172-346 147-330 (404)
366 cd03235 ABC_Metallic_Cations A 94.5 0.4 8.8E-06 48.6 11.8 24 198-221 25-48 (213)
367 cd03244 ABCC_MRP_domain2 Domai 94.5 0.32 6.8E-06 49.7 11.0 23 199-221 31-53 (221)
368 cd03213 ABCG_EPDR ABCG transpo 94.5 0.33 7.1E-06 48.4 10.7 118 198-318 35-172 (194)
369 PF08433 KTI12: Chromatin asso 94.4 0.12 2.5E-06 54.2 7.6 23 199-221 2-24 (270)
370 TIGR02858 spore_III_AA stage I 94.4 0.14 3E-06 53.6 8.1 125 180-321 98-233 (270)
371 cd02028 UMPK_like Uridine mono 94.4 0.067 1.4E-06 52.5 5.5 22 200-221 1-22 (179)
372 PRK10733 hflB ATP-dependent me 94.4 0.25 5.3E-06 59.0 11.2 157 172-348 153-336 (644)
373 cd03283 ABC_MutS-like MutS-lik 94.4 0.24 5.1E-06 49.5 9.4 22 199-220 26-47 (199)
374 PRK05917 DNA polymerase III su 94.4 0.76 1.6E-05 48.3 13.3 59 276-334 94-154 (290)
375 TIGR00150 HI0065_YjeE ATPase, 94.3 0.055 1.2E-06 49.6 4.4 40 178-221 6-45 (133)
376 TIGR00390 hslU ATP-dependent p 94.3 0.1 2.2E-06 57.1 7.2 51 171-221 12-70 (441)
377 PRK14721 flhF flagellar biosyn 94.3 0.18 3.9E-06 56.0 9.2 88 197-286 190-278 (420)
378 cd03245 ABCC_bacteriocin_expor 94.3 0.4 8.6E-06 48.9 11.3 24 198-221 30-53 (220)
379 COG1120 FepC ABC-type cobalami 94.3 0.41 8.8E-06 49.2 10.9 23 198-220 28-50 (258)
380 PRK06217 hypothetical protein; 94.3 0.14 3.1E-06 50.5 7.6 22 200-221 3-24 (183)
381 PF00154 RecA: recA bacterial 94.3 0.089 1.9E-06 56.0 6.4 83 197-286 52-140 (322)
382 PRK06002 fliI flagellum-specif 94.3 0.14 3.1E-06 56.9 8.2 86 198-286 165-263 (450)
383 cd03253 ABCC_ATM1_transporter 94.3 0.37 8.1E-06 49.8 11.0 54 269-322 147-201 (236)
384 PF12775 AAA_7: P-loop contain 94.2 0.031 6.6E-07 58.8 2.8 97 180-295 22-118 (272)
385 TIGR03575 selen_PSTK_euk L-ser 94.2 0.62 1.4E-05 50.3 12.6 21 201-221 2-22 (340)
386 cd03254 ABCC_Glucan_exporter_l 94.2 0.43 9.3E-06 49.0 11.2 53 269-321 149-202 (229)
387 PF03205 MobB: Molybdopterin g 94.2 0.061 1.3E-06 50.2 4.4 39 199-238 1-39 (140)
388 KOG1947 Leucine rich repeat pr 94.2 0.0063 1.4E-07 70.7 -2.8 40 848-887 402-443 (482)
389 PRK13543 cytochrome c biogenes 94.2 0.45 9.8E-06 48.3 11.2 24 198-221 37-60 (214)
390 COG1121 ZnuC ABC-type Mn/Zn tr 94.2 0.24 5.1E-06 50.6 8.9 122 199-320 31-202 (254)
391 PRK09544 znuC high-affinity zi 94.1 0.33 7.1E-06 50.6 10.2 24 198-221 30-53 (251)
392 COG0467 RAD55 RecA-superfamily 94.1 0.091 2E-06 55.2 6.1 50 196-249 21-70 (260)
393 PRK14723 flhF flagellar biosyn 94.1 0.29 6.3E-06 58.1 10.7 88 198-287 185-273 (767)
394 PRK04040 adenylate kinase; Pro 94.1 0.039 8.4E-07 54.5 3.1 22 199-220 3-24 (188)
395 cd03251 ABCC_MsbA MsbA is an e 94.1 0.64 1.4E-05 47.9 12.3 54 269-322 148-202 (234)
396 COG0396 sufC Cysteine desulfur 94.1 0.54 1.2E-05 46.7 10.7 60 268-329 153-216 (251)
397 PRK03839 putative kinase; Prov 94.0 0.036 7.8E-07 54.6 2.8 22 200-221 2-23 (180)
398 cd03240 ABC_Rad50 The catalyti 94.0 0.26 5.6E-06 49.6 8.9 54 269-322 131-188 (204)
399 PF06745 KaiC: KaiC; InterPro 94.0 0.096 2.1E-06 53.7 6.0 86 197-286 18-124 (226)
400 KOG0739 AAA+-type ATPase [Post 94.0 0.86 1.9E-05 46.8 12.2 96 171-287 133-235 (439)
401 cd03233 ABC_PDR_domain1 The pl 94.0 0.47 1E-05 47.6 10.8 24 198-221 33-56 (202)
402 PF07726 AAA_3: ATPase family 94.0 0.026 5.6E-07 50.8 1.5 27 201-229 2-28 (131)
403 PTZ00088 adenylate kinase 1; P 94.0 0.055 1.2E-06 55.1 4.1 20 201-220 9-28 (229)
404 TIGR00382 clpX endopeptidase C 94.0 0.27 5.8E-06 54.6 9.6 50 171-220 77-138 (413)
405 cd02027 APSK Adenosine 5'-phos 94.0 0.14 3.1E-06 48.4 6.6 22 200-221 1-22 (149)
406 TIGR03740 galliderm_ABC gallid 94.0 0.52 1.1E-05 48.2 11.3 52 270-321 135-188 (223)
407 PF12061 DUF3542: Protein of u 94.0 0.09 2E-06 53.8 5.3 76 5-84 297-373 (402)
408 PF13481 AAA_25: AAA domain; P 94.0 0.24 5.2E-06 49.3 8.6 41 199-239 33-81 (193)
409 cd03282 ABC_MSH4_euk MutS4 hom 93.9 0.16 3.4E-06 51.0 7.2 120 198-324 29-158 (204)
410 PRK09580 sufC cysteine desulfu 93.9 0.49 1.1E-05 49.3 11.2 24 198-221 27-50 (248)
411 TIGR01360 aden_kin_iso1 adenyl 93.9 0.042 9.1E-07 54.5 2.9 24 197-220 2-25 (188)
412 PRK10820 DNA-binding transcrip 93.9 0.13 2.9E-06 59.6 7.4 133 171-317 204-349 (520)
413 PRK04328 hypothetical protein; 93.8 0.17 3.7E-06 52.6 7.4 41 197-239 22-62 (249)
414 PRK15453 phosphoribulokinase; 93.8 0.28 6.2E-06 50.8 8.8 76 197-275 4-88 (290)
415 PRK06995 flhF flagellar biosyn 93.8 0.34 7.3E-06 54.8 10.0 88 198-287 256-344 (484)
416 PRK05986 cob(I)alamin adenolsy 93.8 0.31 6.8E-06 47.5 8.5 119 197-317 21-158 (191)
417 cd03252 ABCC_Hemolysin The ABC 93.8 0.83 1.8E-05 47.2 12.5 52 270-321 149-201 (237)
418 TIGR03771 anch_rpt_ABC anchore 93.7 0.52 1.1E-05 48.1 10.8 23 199-221 7-29 (223)
419 PRK10875 recD exonuclease V su 93.7 0.28 6.1E-06 57.5 9.7 53 198-250 167-220 (615)
420 cd01121 Sms Sms (bacterial rad 93.7 0.23 4.9E-06 54.7 8.5 82 197-286 81-167 (372)
421 PRK06731 flhF flagellar biosyn 93.7 0.39 8.4E-06 50.2 9.8 89 198-288 75-165 (270)
422 PF01078 Mg_chelatase: Magnesi 93.7 0.1 2.3E-06 51.4 5.2 42 171-220 3-44 (206)
423 PRK00625 shikimate kinase; Pro 93.7 0.044 9.6E-07 53.2 2.6 21 200-220 2-22 (173)
424 PF03969 AFG1_ATPase: AFG1-lik 93.7 0.12 2.6E-06 56.5 6.2 101 197-315 61-166 (362)
425 PRK05201 hslU ATP-dependent pr 93.6 0.14 3.1E-06 56.0 6.6 51 171-221 15-73 (443)
426 PF13479 AAA_24: AAA domain 93.6 0.19 4.2E-06 50.9 7.3 20 199-218 4-23 (213)
427 PF00006 ATP-synt_ab: ATP synt 93.6 0.16 3.6E-06 51.0 6.6 96 182-286 4-114 (215)
428 TIGR03878 thermo_KaiC_2 KaiC d 93.6 0.23 5E-06 52.0 8.0 40 197-238 35-74 (259)
429 COG4088 Predicted nucleotide k 93.6 0.19 4.2E-06 48.6 6.6 22 199-220 2-23 (261)
430 cd02023 UMPK Uridine monophosp 93.6 0.041 9E-07 55.1 2.3 21 200-220 1-21 (198)
431 TIGR02322 phosphon_PhnN phosph 93.6 0.05 1.1E-06 53.5 2.9 23 199-221 2-24 (179)
432 PRK07276 DNA polymerase III su 93.6 1.6 3.5E-05 46.0 14.1 69 276-345 103-173 (290)
433 PF03308 ArgK: ArgK protein; 93.5 0.13 2.8E-06 52.2 5.6 39 179-221 14-52 (266)
434 PRK07594 type III secretion sy 93.5 0.31 6.7E-06 54.2 9.1 85 198-286 155-254 (433)
435 COG1643 HrpA HrpA-like helicas 93.5 0.45 9.8E-06 57.3 10.9 131 178-319 53-207 (845)
436 cd01135 V_A-ATPase_B V/A-type 93.5 0.32 6.9E-06 50.4 8.5 88 199-286 70-175 (276)
437 PRK10751 molybdopterin-guanine 93.5 0.066 1.4E-06 51.6 3.4 25 197-221 5-29 (173)
438 TIGR01069 mutS2 MutS2 family p 93.4 0.067 1.5E-06 64.6 4.1 24 197-220 321-344 (771)
439 PRK09280 F0F1 ATP synthase sub 93.4 0.28 6E-06 54.9 8.5 87 199-286 145-247 (463)
440 cd03250 ABCC_MRP_domain1 Domai 93.4 1.1 2.4E-05 45.0 12.4 24 198-221 31-54 (204)
441 cd02024 NRK1 Nicotinamide ribo 93.4 0.046 1E-06 53.7 2.2 22 200-221 1-22 (187)
442 PRK08972 fliI flagellum-specif 93.4 0.24 5.2E-06 54.9 7.9 85 198-286 162-261 (444)
443 KOG0924 mRNA splicing factor A 93.4 0.61 1.3E-05 53.0 11.0 116 198-319 371-512 (1042)
444 PRK10463 hydrogenase nickel in 93.4 0.31 6.8E-06 51.0 8.3 27 195-221 101-127 (290)
445 TIGR00764 lon_rel lon-related 93.4 0.19 4.1E-06 59.2 7.6 74 171-255 18-92 (608)
446 PRK08149 ATP synthase SpaL; Va 93.4 0.3 6.5E-06 54.2 8.7 85 198-286 151-250 (428)
447 PRK00131 aroK shikimate kinase 93.3 0.056 1.2E-06 52.8 2.8 24 198-221 4-27 (175)
448 PRK12597 F0F1 ATP synthase sub 93.3 0.2 4.4E-06 56.2 7.3 87 199-286 144-246 (461)
449 TIGR01359 UMP_CMP_kin_fam UMP- 93.3 0.048 1E-06 53.8 2.3 21 200-220 1-21 (183)
450 COG4133 CcmA ABC-type transpor 93.3 1.1 2.3E-05 43.2 10.9 54 264-317 135-190 (209)
451 COG2401 ABC-type ATPase fused 93.3 0.15 3.2E-06 54.7 5.7 156 171-327 371-578 (593)
452 COG1428 Deoxynucleoside kinase 93.3 0.056 1.2E-06 52.8 2.5 24 198-221 4-27 (216)
453 TIGR03498 FliI_clade3 flagella 93.3 0.31 6.8E-06 54.1 8.6 84 199-286 141-239 (418)
454 COG2019 AdkA Archaeal adenylat 93.2 0.07 1.5E-06 49.8 2.9 23 198-220 4-26 (189)
455 cd02029 PRK_like Phosphoribulo 93.2 0.18 4E-06 51.7 6.2 76 200-277 1-84 (277)
456 KOG0727 26S proteasome regulat 93.2 0.19 4E-06 50.0 5.9 52 170-221 154-212 (408)
457 PRK08927 fliI flagellum-specif 93.2 0.35 7.6E-06 53.8 8.8 85 198-286 158-257 (442)
458 PRK00279 adk adenylate kinase; 93.2 0.4 8.7E-06 48.7 8.8 21 200-220 2-22 (215)
459 TIGR03263 guanyl_kin guanylate 93.1 0.066 1.4E-06 52.7 2.9 22 199-220 2-23 (180)
460 COG2842 Uncharacterized ATPase 93.1 2.4 5.3E-05 44.0 14.0 98 199-304 95-192 (297)
461 PLN02348 phosphoribulokinase 93.1 0.36 7.8E-06 52.6 8.6 26 196-221 47-72 (395)
462 cd00227 CPT Chloramphenicol (C 93.1 0.065 1.4E-06 52.5 2.7 23 199-221 3-25 (175)
463 PRK13765 ATP-dependent proteas 93.0 0.15 3.2E-06 59.9 6.0 75 171-255 31-105 (637)
464 TIGR01420 pilT_fam pilus retra 93.0 0.24 5.2E-06 54.2 7.3 110 198-318 122-231 (343)
465 cd04159 Arl10_like Arl10-like 93.0 0.39 8.4E-06 45.6 8.1 21 201-221 2-22 (159)
466 cd02021 GntK Gluconate kinase 93.0 0.062 1.3E-06 51.1 2.4 22 200-221 1-22 (150)
467 COG1703 ArgK Putative periplas 93.0 0.13 2.7E-06 53.1 4.6 65 180-248 37-101 (323)
468 KOG0927 Predicted transporter 93.0 0.87 1.9E-05 50.8 11.2 118 198-317 416-566 (614)
469 PRK14269 phosphate ABC transpo 93.0 1.1 2.5E-05 46.5 12.0 22 199-220 29-50 (246)
470 COG2274 SunT ABC-type bacterio 93.0 0.77 1.7E-05 54.9 11.8 53 269-321 619-673 (709)
471 PF08477 Miro: Miro-like prote 92.9 0.073 1.6E-06 48.1 2.7 22 201-222 2-23 (119)
472 PRK12678 transcription termina 92.9 0.14 2.9E-06 58.0 5.2 99 182-286 405-512 (672)
473 cd01132 F1_ATPase_alpha F1 ATP 92.9 0.36 7.7E-06 50.1 7.9 84 199-286 70-170 (274)
474 KOG2123 Uncharacterized conser 92.9 0.0054 1.2E-07 61.6 -5.1 83 729-832 18-100 (388)
475 COG1936 Predicted nucleotide k 92.9 0.075 1.6E-06 50.1 2.7 20 200-219 2-21 (180)
476 TIGR02655 circ_KaiC circadian 92.9 0.55 1.2E-05 54.1 10.3 48 197-248 262-309 (484)
477 cd03243 ABC_MutS_homologs The 92.9 0.14 3.1E-06 51.4 4.9 22 199-220 30-51 (202)
478 cd00820 PEPCK_HprK Phosphoenol 92.9 0.092 2E-06 46.0 3.0 22 198-219 15-36 (107)
479 cd01136 ATPase_flagellum-secre 92.8 0.55 1.2E-05 50.4 9.4 84 199-286 70-168 (326)
480 COG5635 Predicted NTPase (NACH 92.8 0.17 3.8E-06 62.3 6.5 139 198-341 222-372 (824)
481 KOG3864 Uncharacterized conser 92.8 0.013 2.8E-07 56.4 -2.5 69 816-885 121-190 (221)
482 COG0529 CysC Adenylylsulfate k 92.8 0.094 2E-06 49.5 3.1 24 197-220 22-45 (197)
483 cd02020 CMPK Cytidine monophos 92.8 0.066 1.4E-06 50.6 2.3 21 200-220 1-21 (147)
484 PF00625 Guanylate_kin: Guanyl 92.8 0.096 2.1E-06 51.7 3.5 37 198-236 2-38 (183)
485 TIGR00041 DTMP_kinase thymidyl 92.8 0.4 8.7E-06 47.8 8.0 23 199-221 4-26 (195)
486 PF10236 DAP3: Mitochondrial r 92.8 0.73 1.6E-05 49.5 10.4 49 328-377 258-306 (309)
487 PTZ00185 ATPase alpha subunit; 92.8 0.56 1.2E-05 52.6 9.5 88 199-286 190-298 (574)
488 cd03248 ABCC_TAP TAP, the Tran 92.8 1 2.2E-05 46.2 11.1 24 198-221 40-63 (226)
489 PRK13545 tagH teichoic acids e 92.8 1.2 2.6E-05 50.8 12.3 24 198-221 50-73 (549)
490 smart00534 MUTSac ATPase domai 92.7 0.078 1.7E-06 52.4 2.7 21 200-220 1-21 (185)
491 PRK10078 ribose 1,5-bisphospho 92.7 0.085 1.8E-06 52.2 3.0 23 199-221 3-25 (186)
492 PRK03846 adenylylsulfate kinas 92.7 0.094 2E-06 52.5 3.3 24 197-220 23-46 (198)
493 PRK11388 DNA-binding transcrip 92.7 0.31 6.8E-06 58.5 8.3 47 171-221 325-371 (638)
494 PF03796 DnaB_C: DnaB-like hel 92.6 0.59 1.3E-05 49.1 9.4 55 199-256 20-74 (259)
495 PRK09519 recA DNA recombinatio 92.6 0.31 6.7E-06 58.1 7.8 84 197-287 59-148 (790)
496 PRK13949 shikimate kinase; Pro 92.6 0.08 1.7E-06 51.4 2.6 22 200-221 3-24 (169)
497 PF06309 Torsin: Torsin; Inte 92.6 0.2 4.3E-06 45.0 4.8 50 172-221 26-76 (127)
498 PRK13947 shikimate kinase; Pro 92.6 0.078 1.7E-06 51.7 2.5 21 200-220 3-23 (171)
499 TIGR01447 recD exodeoxyribonuc 92.6 0.47 1E-05 55.6 9.2 23 198-220 160-182 (586)
500 COG1066 Sms Predicted ATP-depe 92.6 0.27 5.9E-06 52.9 6.6 81 198-287 93-178 (456)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=8.2e-87 Score=785.42 Aligned_cols=816 Identities=24% Similarity=0.383 Sum_probs=596.5
Q ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHhhcchhhHHHH
Q 038751 3 DAIVSPLLEQLISISYEEAKQQVRLVAGVGKQVKKLTSNLRAIQAVLNDAEQRQVKEESVRLWLDQLKETSYDIDDVLDE 82 (915)
Q Consensus 3 ~~~v~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~L~~~l~~i~~~l~~a~~~~~~~~~~~~wl~~lr~~ayd~ed~ld~ 82 (915)
+++++..++++.+ .+.++...+.+.++.+..|+++|..+++++.||++++.....+..|.+.+++++|++||.++.
T Consensus 2 ~~~~s~~~~~~~~----~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~~ 77 (889)
T KOG4658|consen 2 GACVSFGVEKLDQ----LLNRESECLDGKDNYILELKENLKALQSALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIWL 77 (889)
T ss_pred CeEEEEehhhHHH----HHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666777777 788888999999999999999999999999999999888889999999999999999999999
Q ss_pred HHHHHHHhhhhhcchhccccCccccccccccccccccchhhHHHHHHHHHHHHHHHHHHhhccccccccccC--C--Ccc
Q 038751 83 WITARLKLQIEDVDENALVHKKPVCSFLLSPCIGFKQVVLRRDIAQKIIEINENLDDIAKQKDVFNFNVIRG--S--TEK 158 (915)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~l~~i~~~~~~~~~~~~~~--~--~~~ 158 (915)
|.......+..+.-.. .....+.. |.| .++++.+..+..+.+++..+.+....++....-. . ...
T Consensus 78 ~~v~~~~~~~~~~l~~----~~~~~~~~---c~~----~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~ 146 (889)
T KOG4658|consen 78 FLVEEIERKANDLLST----RSVERQRL---CLC----GFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDP 146 (889)
T ss_pred HHHHHHHHHHhHHhhh----hHHHHHHH---hhh----hhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccc
Confidence 9988765433222000 00001111 111 3445555555555566555555555554332111 1 111
Q ss_pred ccccccccccccCccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccc-cccCCCeEEEEEeC
Q 038751 159 SERIHSTALINVSDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKD-VIENFDKRIWVCVS 237 (915)
Q Consensus 159 ~~~~~~~~~~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~F~~~~wv~vs 237 (915)
...+...+...... ||.+..++++.+.|...+ ..+++|+||||+||||||+.++|+.. ++.+||.++||+||
T Consensus 147 ~~~~e~~~~~~~~~-VG~e~~~~kl~~~L~~d~------~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VS 219 (889)
T KOG4658|consen 147 REKVETRPIQSESD-VGLETMLEKLWNRLMEDD------VGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVS 219 (889)
T ss_pred hhhcccCCCCcccc-ccHHHHHHHHHHHhccCC------CCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEc
Confidence 12334444444555 999999999999998653 38999999999999999999999988 99999999999999
Q ss_pred CCCCHHHHHHHHHHHhhCCCCCcc--cHHHHHHHHHHHhccCeEEEEEeCCCCCCccChhhhHHhhhcCCCCceEEEEcC
Q 038751 238 DPFDEFRIAKAIIEGLEGSLPNLR--ELNSLLEYIHTSIKEKKFFLILDDVWPDDYSKWEPFHNCLMNGLCGSRILVTTR 315 (915)
Q Consensus 238 ~~~~~~~~~~~i~~~l~~~~~~~~--~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR 315 (915)
+.++...++.+|++.++....... ..+++...|.+.|++|||+|||||||+. .+|+.+..++|...+||+|++|||
T Consensus 220 k~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~--~dw~~I~~~~p~~~~g~KvvlTTR 297 (889)
T KOG4658|consen 220 KEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEE--VDWDKIGVPFPSRENGSKVVLTTR 297 (889)
T ss_pred ccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhccCceEEEEeccccc--ccHHhcCCCCCCccCCeEEEEEec
Confidence 999999999999999986433322 3468899999999999999999999975 469999999999999999999999
Q ss_pred chHHHhh-hcCcCeEeCCCCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCCCchHHHHHHhHhhcCCCHHHHH
Q 038751 316 KETVARM-MESTDVISIKELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKGLPLAAKTIGSLLRFKKTREEWH 394 (915)
Q Consensus 316 ~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~PLai~~~~~~l~~~~~~~~w~ 394 (915)
+..|+.. +++...++++.|+++|||+||++.+|.... ...+.+.++|++|+++|+|+|||+.++|+.|+.+++.++|+
T Consensus 298 s~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~-~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~ 376 (889)
T KOG4658|consen 298 SEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTL-GSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWR 376 (889)
T ss_pred cHhhhhccccCCccccccccCccccHHHHHHhhccccc-cccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHH
Confidence 9999998 787889999999999999999999987643 33445999999999999999999999999999999999999
Q ss_pred HHHhhhccc----cccccccchHHHHHhhcCCChHhhhHHhHhccCCCCcccChHHHHHHHHHcCCcccCC-CccHHHHH
Q 038751 395 IILNSEMWQ----LEEFERGLLAPLLLSYNDLPSAIKRCFLYCAVFPKDYNLDKDELVKLWMAQGYIEQKG-NIEMEMTG 469 (915)
Q Consensus 395 ~~~~~~~~~----~~~~~~~~~~~l~~sy~~L~~~~k~cf~~~s~fp~~~~i~~~~Li~~W~aeg~i~~~~-~~~~e~~~ 469 (915)
++.+...+. .++..+.++++|.+||+.||+++|.||+|||+||+||+|+++.|+.+|+||||+.+.. +.+++++|
T Consensus 377 ~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G 456 (889)
T KOG4658|consen 377 RALNVLKSSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVG 456 (889)
T ss_pred HHHccccccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcch
Confidence 998865544 3344678999999999999999999999999999999999999999999999999844 68899999
Q ss_pred HHHHHHHHHcccccccccCCCCeeEEEechHHHHHHHHHhh-----hhceEEEcC-CCCCCcccccccccceEEEEEEcc
Q 038751 470 EWYFDFLATRSFFQEFDEEKEGTVRCKMHDIVHDFAQYLTR-----KEFAAIEID-GDEKPFLLTNTCQEKLRHLMLVLG 543 (915)
Q Consensus 470 ~~~l~~L~~~sll~~~~~~~~~~~~~~mHdlv~d~a~~~~~-----~e~~~~~~~-~~~~~~~~~~~~~~~~r~Lsl~~~ 543 (915)
+.|+.+|++++|++..+.. ++..+|+|||+|||+|.++|+ .|+.+...+ +....+ ....+..+|++++.++
T Consensus 457 ~~~i~~LV~~~Ll~~~~~~-~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~--~~~~~~~~rr~s~~~~ 533 (889)
T KOG4658|consen 457 YDYIEELVRASLLIEERDE-GRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIP--QVKSWNSVRRMSLMNN 533 (889)
T ss_pred HHHHHHHHHHHHHhhcccc-cceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccc--cccchhheeEEEEecc
Confidence 9999999999999987754 456789999999999999999 676555543 222222 3345578999999999
Q ss_pred ccccCccccCCCCceeEEEeccCCCCceeccccch-hccccCCcceeeecCCCCCccccccccCCCcCCCccc-----Cc
Q 038751 544 FWAKFPFSIFDAKTLHSLILVYSSNNQVAASPVLQ-GLFDQLTCLRALKIEDLPPTIKIPKGLENLIHLRYLK-----LS 617 (915)
Q Consensus 544 ~~~~~~~~~~~~~~Lr~L~l~~~~~~lrv~~~~lp-~~i~~L~~Lr~L~l~~~~~~~~lP~~i~~L~~Lr~L~-----l~ 617 (915)
.+...+ .-..+++|+||.+..+.. .+..++ ..|..|++|++||+++|....+||.+|++|.+||||+ ++
T Consensus 534 ~~~~~~-~~~~~~~L~tLll~~n~~----~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~ 608 (889)
T KOG4658|consen 534 KIEHIA-GSSENPKLRTLLLQRNSD----WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS 608 (889)
T ss_pred chhhcc-CCCCCCccceEEEeecch----hhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc
Confidence 876433 334556899999988741 123333 4477889999999988877778999999999999888 56
Q ss_pred ccCCcCCCCCCCCccCceeecccCCccCCCCcCCCCCcCccccccceeEcCccCCCChhhHhHhhccCCCCCCceEEEEe
Q 038751 618 MVPNGIERLTSLRTLSEFAVARVGGKYSSKSCNLEGLRPLNHLRGFLQISGLGNVTDADEAKNAHLEKKKNLIDLILIFN 697 (915)
Q Consensus 618 ~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~ 697 (915)
.+|.++++|.+|.+|++......... +.....|.+|+ .|.+..-. ..........+.++.+|+.|.....
T Consensus 609 ~LP~~l~~Lk~L~~Lnl~~~~~l~~~----~~i~~~L~~Lr----~L~l~~s~--~~~~~~~l~el~~Le~L~~ls~~~~ 678 (889)
T KOG4658|consen 609 HLPSGLGNLKKLIYLNLEVTGRLESI----PGILLELQSLR----VLRLPRSA--LSNDKLLLKELENLEHLENLSITIS 678 (889)
T ss_pred ccchHHHHHHhhheeccccccccccc----cchhhhccccc----EEEeeccc--cccchhhHHhhhcccchhhheeecc
Confidence 78888999999998887765543311 11222244444 34443321 1222333445566677777666543
Q ss_pred cC---CCCc---hhhhhhhhhHHHHhhHHHHHhhcCCCCCcceEEEeeeCCCCCC-Cccc-----C-ccCccEEEEcCcC
Q 038751 698 ER---EESD---DEKASEEMNEEKEAKHEAVCEALRPPPDIKSLEIMVFKGRTPS-NWIG-----S-LNKLKMLTLNSFV 764 (915)
Q Consensus 698 ~~---~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p-~~~~-----~-l~~L~~L~L~~~~ 764 (915)
.. .... ......................+..+.+|+.|.|.+|.+...+ .|.. . +++|.++.+.+|.
T Consensus 679 s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~ 758 (889)
T KOG4658|consen 679 SVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCH 758 (889)
T ss_pred hhHhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccc
Confidence 32 0000 0000000000000011223345567889999999999876542 2332 2 5677777788887
Q ss_pred CCCCCCCCCCCCCcceeeccccccceEeCccccCCcccccccccccCCCcccccCccccee-eecCcccccccccCCCCc
Q 038751 765 KCEIMPPLGKLPSLEILRIWHMRSVKRVGDEFLGMEISDHIHIHGTSSSSSVIAFPKLQKL-ELTGMDELEEWDFGNDDI 843 (915)
Q Consensus 765 ~~~~l~~l~~Lp~L~~L~L~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~f~~L~~L-~l~~~~~l~~~~~~~~~~ 843 (915)
....+.+....|+|+.|.+.+|..++.+.........+.. ....|+++..+ .+.+.+.++.+...+-
T Consensus 759 ~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~----------~i~~f~~~~~l~~~~~l~~l~~i~~~~l-- 826 (889)
T KOG4658|consen 759 MLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKE----------LILPFNKLEGLRMLCSLGGLPQLYWLPL-- 826 (889)
T ss_pred cccccchhhccCcccEEEEecccccccCCCHHHHhhhccc----------EEecccccccceeeecCCCCceeEeccc--
Confidence 7777766667899999999999877665433222221111 12356666666 4666655555443332
Q ss_pred ccCcccceeecccCccccCCCcCCCCCCCcCeEeEcCC
Q 038751 844 TIMPHIKSLYITYCEKLKSLPELLLRSTTLESLTIFGV 881 (915)
Q Consensus 844 ~~lp~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~c 881 (915)
.+++|+.+.+..||+++.+|. +.++.+.+|
T Consensus 827 -~~~~l~~~~ve~~p~l~~~P~-------~~~~~i~~~ 856 (889)
T KOG4658|consen 827 -SFLKLEELIVEECPKLGKLPL-------LSTLTIVGC 856 (889)
T ss_pred -CccchhheehhcCcccccCcc-------ccccceecc
Confidence 466688888888888877763 445556665
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=6.2e-59 Score=581.28 Aligned_cols=638 Identities=19% Similarity=0.223 Sum_probs=388.7
Q ss_pred cccCccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEe---CCC-----
Q 038751 168 INVSDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCV---SDP----- 239 (915)
Q Consensus 168 ~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v---s~~----- 239 (915)
.+...+|||+..++++..+|.-. .++.++|+||||||+||||||+++|+ ++..+|+..+|+.. +..
T Consensus 181 ~~~~~~vG~~~~l~~l~~lL~l~----~~~~~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~ 254 (1153)
T PLN03210 181 NDFEDFVGIEDHIAKMSSLLHLE----SEEVRMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYS 254 (1153)
T ss_pred cccccccchHHHHHHHHHHHccc----cCceEEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhcc
Confidence 34567999999999999988543 33689999999999999999999999 67788998887642 111
Q ss_pred ------CC-HHHHHHHHHHHhhCCCC-CcccHHHHHHHHHHHhccCeEEEEEeCCCCCCccChhhhHHhhhcCCCCceEE
Q 038751 240 ------FD-EFRIAKAIIEGLEGSLP-NLRELNSLLEYIHTSIKEKKFFLILDDVWPDDYSKWEPFHNCLMNGLCGSRIL 311 (915)
Q Consensus 240 ------~~-~~~~~~~i~~~l~~~~~-~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~ii 311 (915)
++ ...+.++++.++..... .... ...+++.++++|+||||||||+. ..|+.+.......++||+||
T Consensus 255 ~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~----~~~~~~~L~~krvLLVLDdv~~~--~~l~~L~~~~~~~~~GsrII 328 (1153)
T PLN03210 255 SANPDDYNMKLHLQRAFLSEILDKKDIKIYH----LGAMEERLKHRKVLIFIDDLDDQ--DVLDALAGQTQWFGSGSRII 328 (1153)
T ss_pred cccccccchhHHHHHHHHHHHhCCCCcccCC----HHHHHHHHhCCeEEEEEeCCCCH--HHHHHHHhhCccCCCCcEEE
Confidence 11 12344455555433211 1111 14567788999999999999753 57888877666667899999
Q ss_pred EEcCchHHHhhhcCcCeEeCCCCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCCCchHHHHHHhHhhcCCCHH
Q 038751 312 VTTRKETVARMMESTDVISIKELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKGLPLAAKTIGSLLRFKKTRE 391 (915)
Q Consensus 312 vTtR~~~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~PLai~~~~~~l~~~~~~~ 391 (915)
||||+..++..++..++|+++.|++++||+||+++||+... .++++.+++++|+++|+|+|||++++|+.|+.+ +..
T Consensus 329 iTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~--~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~~ 405 (1153)
T PLN03210 329 VITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNS--PPDGFMELASEVALRAGNLPLGLNVLGSYLRGR-DKE 405 (1153)
T ss_pred EEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCC--CcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CHH
Confidence 99999999987777889999999999999999999997643 345688999999999999999999999999865 789
Q ss_pred HHHHHHhhhccccccccccchHHHHHhhcCCCh-HhhhHHhHhccCCCCcccChHHHHHHHHHcCCcccCCCccHHHHHH
Q 038751 392 EWHIILNSEMWQLEEFERGLLAPLLLSYNDLPS-AIKRCFLYCAVFPKDYNLDKDELVKLWMAQGYIEQKGNIEMEMTGE 470 (915)
Q Consensus 392 ~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~-~~k~cf~~~s~fp~~~~i~~~~Li~~W~aeg~i~~~~~~~~e~~~~ 470 (915)
+|..++++..... ...+..+|++||+.|++ ..|.||+++|+||.++.+ ..+..|+|.+.....
T Consensus 406 ~W~~~l~~L~~~~---~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~---~~v~~~l~~~~~~~~---------- 469 (1153)
T PLN03210 406 DWMDMLPRLRNGL---DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKV---NDIKLLLANSDLDVN---------- 469 (1153)
T ss_pred HHHHHHHHHHhCc---cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCH---HHHHHHHHhcCCCch----------
Confidence 9999998765432 34699999999999987 599999999999988655 347788887655321
Q ss_pred HHHHHHHHcccccccccCCCCeeEEEechHHHHHHHHHhhhhce------EEEcCCCCCCcccccccccceEEEEEEccc
Q 038751 471 WYFDFLATRSFFQEFDEEKEGTVRCKMHDIVHDFAQYLTRKEFA------AIEIDGDEKPFLLTNTCQEKLRHLMLVLGF 544 (915)
Q Consensus 471 ~~l~~L~~~sll~~~~~~~~~~~~~~mHdlv~d~a~~~~~~e~~------~~~~~~~~~~~~~~~~~~~~~r~Lsl~~~~ 544 (915)
.-++.|+++||++.... .+.|||++|++|+.++.++.. ..+........+..+.+...++++++....
T Consensus 470 ~~l~~L~~ksLi~~~~~------~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~ 543 (1153)
T PLN03210 470 IGLKNLVDKSLIHVRED------IVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDE 543 (1153)
T ss_pred hChHHHHhcCCEEEcCC------eEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCc
Confidence 12889999999987542 389999999999999887631 111100000001123334567777665444
Q ss_pred ccc---CccccCCCCceeEEEeccCC-------------------CCcee------ccccchhccccCCcceeeecCCCC
Q 038751 545 WAK---FPFSIFDAKTLHSLILVYSS-------------------NNQVA------ASPVLQGLFDQLTCLRALKIEDLP 596 (915)
Q Consensus 545 ~~~---~~~~~~~~~~Lr~L~l~~~~-------------------~~lrv------~~~~lp~~i~~L~~Lr~L~l~~~~ 596 (915)
... .+..+.++++|+.|.+..+. ..||. .+..+|..+ .+.+|++|++.++.
T Consensus 544 ~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~ 622 (1153)
T PLN03210 544 IDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSK 622 (1153)
T ss_pred cceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCcc
Confidence 332 23346667777777665431 01111 233344443 34455555555444
Q ss_pred CccccccccCCCcCCCcccCc------ccCCcCCCCCCCCccCceeecccCCccCCCCcCCCCCcCccccccceeEcCcc
Q 038751 597 PTIKIPKGLENLIHLRYLKLS------MVPNGIERLTSLRTLSEFAVARVGGKYSSKSCNLEGLRPLNHLRGFLQISGLG 670 (915)
Q Consensus 597 ~~~~lP~~i~~L~~Lr~L~l~------~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~ 670 (915)
.. .+|.++..+++|++|+++ .+| .++.+++|++|++..+.... .....+.+|++|+ .|.+.++.
T Consensus 623 l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~-------~lp~si~~L~~L~-~L~L~~c~ 692 (1153)
T PLN03210 623 LE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLV-------ELPSSIQYLNKLE-DLDMSRCE 692 (1153)
T ss_pred cc-ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCcc-------ccchhhhccCCCC-EEeCCCCC
Confidence 33 455555555555555532 122 24445555555443322211 0111222233333 44444433
Q ss_pred CCCChhhHhHhhccCCCCCCceEEEEecCCCCchhhhhhhhhHHHHhhHHHHHhhcCCCCCcceEEEeeeCCCCCCCcc-
Q 038751 671 NVTDADEAKNAHLEKKKNLIDLILIFNEREESDDEKASEEMNEEKEAKHEAVCEALRPPPDIKSLEIMVFKGRTPSNWI- 749 (915)
Q Consensus 671 ~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~- 749 (915)
++.... ..+ ++++|+.|.+++|..... ++ ..+.+|+.|++.++....+|..+
T Consensus 693 ~L~~Lp----~~i-~l~sL~~L~Lsgc~~L~~-------------------~p---~~~~nL~~L~L~~n~i~~lP~~~~ 745 (1153)
T PLN03210 693 NLEILP----TGI-NLKSLYRLNLSGCSRLKS-------------------FP---DISTNISWLDLDETAIEEFPSNLR 745 (1153)
T ss_pred CcCccC----CcC-CCCCCCEEeCCCCCCccc-------------------cc---cccCCcCeeecCCCcccccccccc
Confidence 322211 111 344555555544421100 00 01123334444333333333221
Q ss_pred -----------------------------cCccCccEEEEcCcCCCCCCCC-CCCCCCcceeeccccccceEeCccccCC
Q 038751 750 -----------------------------GSLNKLKMLTLNSFVKCEIMPP-LGKLPSLEILRIWHMRSVKRVGDEFLGM 799 (915)
Q Consensus 750 -----------------------------~~l~~L~~L~L~~~~~~~~l~~-l~~Lp~L~~L~L~~~~~l~~~~~~~~~~ 799 (915)
..+++|+.|+|++|.....+|. +++|++|+.|+|++|..++.+|... ..
T Consensus 746 l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L 824 (1153)
T PLN03210 746 LENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NL 824 (1153)
T ss_pred ccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-Cc
Confidence 0123445555555444443432 4555555555555555555555433 33
Q ss_pred cccccccccccCCCcccc-cCcccceeeecCcccccccccCCCCcccCcccceeecccCccccCCCcCCCCCCCcCeEeE
Q 038751 800 EISDHIHIHGTSSSSSVI-AFPKLQKLELTGMDELEEWDFGNDDITIMPHIKSLYITYCEKLKSLPELLLRSTTLESLTI 878 (915)
Q Consensus 800 ~~l~~l~l~~~~~~~~~~-~f~~L~~L~l~~~~~l~~~~~~~~~~~~lp~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l 878 (915)
..++.|++++|.....++ ..++|+.|++.++ .++.++ .++..+++|+.|++.+|++|..+|..+..+++|+.+++
T Consensus 825 ~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n-~i~~iP---~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l 900 (1153)
T PLN03210 825 ESLESLDLSGCSRLRTFPDISTNISDLNLSRT-GIEEVP---WWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDF 900 (1153)
T ss_pred cccCEEECCCCCccccccccccccCEeECCCC-CCccCh---HHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeec
Confidence 445555555543322211 2235555555543 233332 12446677777777777777777766666777777777
Q ss_pred cCCcchh
Q 038751 879 FGVPIVQ 885 (915)
Q Consensus 879 ~~c~~l~ 885 (915)
++|+.|.
T Consensus 901 ~~C~~L~ 907 (1153)
T PLN03210 901 SDCGALT 907 (1153)
T ss_pred CCCcccc
Confidence 7776664
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=1.9e-43 Score=379.84 Aligned_cols=279 Identities=38% Similarity=0.647 Sum_probs=225.8
Q ss_pred chHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhhC
Q 038751 176 RDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEG 255 (915)
Q Consensus 176 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 255 (915)
||.++++|.+.|.... ++.++|+|+||||+||||||+.++++..++.+|+.++||.++...+...++..|+.+++.
T Consensus 1 re~~~~~l~~~L~~~~----~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNS----NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp -HHHHHHHHHHHHTTT----TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhhCCC----CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccc
Confidence 7899999999998743 478999999999999999999999987789999999999999999999999999999987
Q ss_pred CCC---CcccHHHHHHHHHHHhccCeEEEEEeCCCCCCccChhhhHHhhhcCCCCceEEEEcCchHHHhhhcC-cCeEeC
Q 038751 256 SLP---NLRELNSLLEYIHTSIKEKKFFLILDDVWPDDYSKWEPFHNCLMNGLCGSRILVTTRKETVARMMES-TDVISI 331 (915)
Q Consensus 256 ~~~---~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~~~-~~~~~l 331 (915)
... ...+.++....+.+.++++++||||||||+. ..|+.+...++....|++||||||+..++..+.. ...+++
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l 154 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDE--EDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIEL 154 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SH--HHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEEC
T ss_pred cccccccccccccccccchhhhccccceeeeeeeccc--ccccccccccccccccccccccccccccccccccccccccc
Confidence 633 4467788999999999999999999999864 4788888888877789999999999998877655 679999
Q ss_pred CCCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCCCchHHHHHHhHhhcCCCHHHHHHHHhhhcccccc---cc
Q 038751 332 KELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKGLPLAAKTIGSLLRFKKTREEWHIILNSEMWQLEE---FE 408 (915)
Q Consensus 332 ~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~PLai~~~~~~l~~~~~~~~w~~~~~~~~~~~~~---~~ 408 (915)
++|+.+++++||++.++... ....+.+.+++++|+++|+|+|||++++|++|+.+.+..+|..+++...+...+ ..
T Consensus 155 ~~L~~~ea~~L~~~~~~~~~-~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~ 233 (287)
T PF00931_consen 155 EPLSEEEALELFKKRAGRKE-SESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYD 233 (287)
T ss_dssp SS--HHHHHHHHHHHHTSHS-----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSC
T ss_pred cccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999987654 123345567889999999999999999999997666788999988765544422 34
Q ss_pred ccchHHHHHhhcCCChHhhhHHhHhccCCCCcccChHHHHHHHHHcCCcccCC
Q 038751 409 RGLLAPLLLSYNDLPSAIKRCFLYCAVFPKDYNLDKDELVKLWMAQGYIEQKG 461 (915)
Q Consensus 409 ~~~~~~l~~sy~~L~~~~k~cf~~~s~fp~~~~i~~~~Li~~W~aeg~i~~~~ 461 (915)
..+..++.+||+.||++.|.||+|||+||+++.|+++.|+++|++||||...+
T Consensus 234 ~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~~ 286 (287)
T PF00931_consen 234 RSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSKH 286 (287)
T ss_dssp HHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC---
T ss_pred ccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcccC
Confidence 66999999999999999999999999999999999999999999999998653
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.80 E-value=7.3e-20 Score=230.41 Aligned_cols=313 Identities=20% Similarity=0.166 Sum_probs=175.0
Q ss_pred cceEEEEEEcccccc-CccccCCCCceeEEEeccCCCCceeccccchhccccCCcceeeecCCCCCccccccccCCCcCC
Q 038751 533 EKLRHLMLVLGFWAK-FPFSIFDAKTLHSLILVYSSNNQVAASPVLQGLFDQLTCLRALKIEDLPPTIKIPKGLENLIHL 611 (915)
Q Consensus 533 ~~~r~Lsl~~~~~~~-~~~~~~~~~~Lr~L~l~~~~~~lrv~~~~lp~~i~~L~~Lr~L~l~~~~~~~~lP~~i~~L~~L 611 (915)
..++.|++++|.+.. .|..+..+++|++|.+.+|. ....+|..|+++++|++|++++|.....+|..++++++|
T Consensus 140 ~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~-----l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 214 (968)
T PLN00113 140 PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNV-----LVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSL 214 (968)
T ss_pred CCCCEEECcCCcccccCChHHhcCCCCCEEECccCc-----ccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCc
Confidence 456667776666542 55566667777777776663 234566677777777777777766655667777777777
Q ss_pred CcccCc------ccCCcCCCCCCCCccCceeecccCCccCCCCcCCCCCcCccccccceeEcCccCCCChhhHhHhhccC
Q 038751 612 RYLKLS------MVPNGIERLTSLRTLSEFAVARVGGKYSSKSCNLEGLRPLNHLRGFLQISGLGNVTDADEAKNAHLEK 685 (915)
Q Consensus 612 r~L~l~------~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~ 685 (915)
++|+++ .+|..++++++|++|++..+.... .....+.++++|+ .|.+... ......+..+.+
T Consensus 215 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-------~~p~~l~~l~~L~-~L~L~~n----~l~~~~p~~l~~ 282 (968)
T PLN00113 215 KWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTG-------PIPSSLGNLKNLQ-YLFLYQN----KLSGPIPPSIFS 282 (968)
T ss_pred cEEECcCCccCCcCChhHhcCCCCCEEECcCceecc-------ccChhHhCCCCCC-EEECcCC----eeeccCchhHhh
Confidence 777643 356666777777777665443321 1112223333333 4444331 111223344556
Q ss_pred CCCCCceEEEEecCCCCchhhhhhhhhHHHHhhHHHHHhhcCCCCCcceEEEeeeCCC-CCCCcccCccCccEEEEcCcC
Q 038751 686 KKNLIDLILIFNEREESDDEKASEEMNEEKEAKHEAVCEALRPPPDIKSLEIMVFKGR-TPSNWIGSLNKLKMLTLNSFV 764 (915)
Q Consensus 686 l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~p~~~~~l~~L~~L~L~~~~ 764 (915)
+++|+.|++++|... ...+..+..+++|+.|++.+|... ..|.++..+++|+.|+|++|.
T Consensus 283 l~~L~~L~Ls~n~l~-------------------~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~ 343 (968)
T PLN00113 283 LQKLISLDLSDNSLS-------------------GEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNK 343 (968)
T ss_pred ccCcCEEECcCCeec-------------------cCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCC
Confidence 667777777665421 122334455667777777766554 346666677777777777665
Q ss_pred CCCCCCC-CCCCCCcceeeccccccceEeCccccCCcccccccccccCCC----cccccCcccceeeecCcccccccc--
Q 038751 765 KCEIMPP-LGKLPSLEILRIWHMRSVKRVGDEFLGMEISDHIHIHGTSSS----SSVIAFPKLQKLELTGMDELEEWD-- 837 (915)
Q Consensus 765 ~~~~l~~-l~~Lp~L~~L~L~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~----~~~~~f~~L~~L~l~~~~~l~~~~-- 837 (915)
....+|. ++.+++|+.|++++|.....+|..+.....++.+++.+|... ..+..+++|+.|++.++.-....+
T Consensus 344 l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~ 423 (968)
T PLN00113 344 FSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSE 423 (968)
T ss_pred CcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChh
Confidence 5444443 566777777777766544445555555555555666555332 223345555555555442111110
Q ss_pred -------------------cCCCCcccCcccceeecccCccccCCCcCCCCCCCcCeEeEcCCc
Q 038751 838 -------------------FGNDDITIMPHIKSLYITYCEKLKSLPELLLRSTTLESLTIFGVP 882 (915)
Q Consensus 838 -------------------~~~~~~~~lp~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~c~ 882 (915)
..+..+..+++|+.|++.+|...+.+|..+ ..++|+.|++++|.
T Consensus 424 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~ 486 (968)
T PLN00113 424 FTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQ 486 (968)
T ss_pred HhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCc
Confidence 001112356666666666665555556543 34667777776664
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.80 E-value=1.1e-19 Score=228.80 Aligned_cols=310 Identities=18% Similarity=0.152 Sum_probs=214.8
Q ss_pred cceEEEEEEccccccCccccCCCCceeEEEeccCCCCceeccccchhccccCCcceeeecCCCCCccccccccCCCcCCC
Q 038751 533 EKLRHLMLVLGFWAKFPFSIFDAKTLHSLILVYSSNNQVAASPVLQGLFDQLTCLRALKIEDLPPTIKIPKGLENLIHLR 612 (915)
Q Consensus 533 ~~~r~Lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~lrv~~~~lp~~i~~L~~Lr~L~l~~~~~~~~lP~~i~~L~~Lr 612 (915)
..+|+|++++|.+.. ......+++|++|.+.+|. ....+|..|+++.+|++|++++|.....+|..++++++|+
T Consensus 118 ~~L~~L~Ls~n~l~~-~~p~~~l~~L~~L~Ls~n~-----~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 191 (968)
T PLN00113 118 SSLRYLNLSNNNFTG-SIPRGSIPNLETLDLSNNM-----LSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLE 191 (968)
T ss_pred CCCCEEECcCCcccc-ccCccccCCCCEEECcCCc-----ccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCC
Confidence 567777777666542 1122456777777777664 2346788889999999999988877667888899999999
Q ss_pred cccCc------ccCCcCCCCCCCCccCceeecccCCccCCCCcCCCCCcCccccccceeEcCccCCCChhhHhHhhccCC
Q 038751 613 YLKLS------MVPNGIERLTSLRTLSEFAVARVGGKYSSKSCNLEGLRPLNHLRGFLQISGLGNVTDADEAKNAHLEKK 686 (915)
Q Consensus 613 ~L~l~------~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~l 686 (915)
+|+++ .+|..++++++|++|++..+.... .....+.++++|+ .|.+.+. ......+..+.++
T Consensus 192 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-------~~p~~l~~l~~L~-~L~L~~n----~l~~~~p~~l~~l 259 (968)
T PLN00113 192 FLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSG-------EIPYEIGGLTSLN-HLDLVYN----NLTGPIPSSLGNL 259 (968)
T ss_pred eeeccCCCCcCcCChHHcCcCCccEEECcCCccCC-------cCChhHhcCCCCC-EEECcCc----eeccccChhHhCC
Confidence 99853 467788888999988776554332 1222334444444 5666542 2223345567888
Q ss_pred CCCCceEEEEecCCCCchhhhhhhhhHHHHhhHHHHHhhcCCCCCcceEEEeeeCCC-CCCCcccCccCccEEEEcCcCC
Q 038751 687 KNLIDLILIFNEREESDDEKASEEMNEEKEAKHEAVCEALRPPPDIKSLEIMVFKGR-TPSNWIGSLNKLKMLTLNSFVK 765 (915)
Q Consensus 687 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~p~~~~~l~~L~~L~L~~~~~ 765 (915)
++|+.|+++.|... ...+..+..+++|+.|++++|... .+|.++..+++|+.|++++|..
T Consensus 260 ~~L~~L~L~~n~l~-------------------~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~ 320 (968)
T PLN00113 260 KNLQYLFLYQNKLS-------------------GPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNF 320 (968)
T ss_pred CCCCEEECcCCeee-------------------ccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCcc
Confidence 89999999877522 123344556788999999988765 5688888999999999998876
Q ss_pred CCCCCC-CCCCCCcceeeccccccceEeCccccCCcccccccccccCCC----cccccCcccceeeecCcccccccccCC
Q 038751 766 CEIMPP-LGKLPSLEILRIWHMRSVKRVGDEFLGMEISDHIHIHGTSSS----SSVIAFPKLQKLELTGMDELEEWDFGN 840 (915)
Q Consensus 766 ~~~l~~-l~~Lp~L~~L~L~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~----~~~~~f~~L~~L~l~~~~~l~~~~~~~ 840 (915)
.+.+|. ++.+++|+.|++++|.....+|..+.....++.+++++|... ..+..+++|+.|.+.++.-....+
T Consensus 321 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p--- 397 (968)
T PLN00113 321 TGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIP--- 397 (968)
T ss_pred CCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCC---
Confidence 655554 788999999999998855567777777788889999888543 334567889999888764222221
Q ss_pred CCcccCcccceeecccCccccCCCcCCCCCCCcCeEeEcCCc
Q 038751 841 DDITIMPHIKSLYITYCEKLKSLPELLLRSTTLESLTIFGVP 882 (915)
Q Consensus 841 ~~~~~lp~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~c~ 882 (915)
..+..+++|+.|++.+|.....+|..+..+++|+.|++++|.
T Consensus 398 ~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~ 439 (968)
T PLN00113 398 KSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNN 439 (968)
T ss_pred HHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCc
Confidence 224467777777777776555667666667777777776654
No 6
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.74 E-value=1.1e-17 Score=210.47 Aligned_cols=317 Identities=20% Similarity=0.197 Sum_probs=193.2
Q ss_pred cceEEEEEEccccccCccccCCCCceeEEEeccCCCCceeccccchhccccCCcceeeecCCCCCccccccccCCCcCCC
Q 038751 533 EKLRHLMLVLGFWAKFPFSIFDAKTLHSLILVYSSNNQVAASPVLQGLFDQLTCLRALKIEDLPPTIKIPKGLENLIHLR 612 (915)
Q Consensus 533 ~~~r~Lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~lrv~~~~lp~~i~~L~~Lr~L~l~~~~~~~~lP~~i~~L~~Lr 612 (915)
.++|.|.+.++.+..+|..+ ...+|+.|.+.++ .+..+|..+..+.+|++|+++++.....+| .+.++++|+
T Consensus 589 ~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s------~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le 660 (1153)
T PLN03210 589 PKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGS------KLEKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLE 660 (1153)
T ss_pred cccEEEEecCCCCCCCCCcC-CccCCcEEECcCc------cccccccccccCCCCCEEECCCCCCcCcCC-ccccCCccc
Confidence 45777777766665555544 4566777777665 344556666666666666666554433454 355666666
Q ss_pred cccCc------ccCCcCCCCCCCCccCceeecccCCccCCCCcCCCCCcCccccccceeEcCccCCCChhh---------
Q 038751 613 YLKLS------MVPNGIERLTSLRTLSEFAVARVGGKYSSKSCNLEGLRPLNHLRGFLQISGLGNVTDADE--------- 677 (915)
Q Consensus 613 ~L~l~------~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~--------- 677 (915)
+|+++ .+|..+++|++|+.|++..+...... +..+ ++++|+ .|.+.++..+.....
T Consensus 661 ~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~L----p~~i----~l~sL~-~L~Lsgc~~L~~~p~~~~nL~~L~ 731 (1153)
T PLN03210 661 TLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEIL----PTGI----NLKSLY-RLNLSGCSRLKSFPDISTNISWLD 731 (1153)
T ss_pred EEEecCCCCccccchhhhccCCCCEEeCCCCCCcCcc----CCcC----CCCCCC-EEeCCCCCCccccccccCCcCeee
Confidence 66532 34555666666666655443322110 1011 222233 343433322211100
Q ss_pred -------HhHhhccCCCCCCceEEEEecCCCCchhhhhhhhhHHHHhhHHHHHhhcCCCCCcceEEEeeeCC-CCCCCcc
Q 038751 678 -------AKNAHLEKKKNLIDLILIFNEREESDDEKASEEMNEEKEAKHEAVCEALRPPPDIKSLEIMVFKG-RTPSNWI 749 (915)
Q Consensus 678 -------~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~~p~~~ 749 (915)
..+..+ .+++|+.|.+..+...... .. ...........+++|+.|++++|.. ..+|.++
T Consensus 732 L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l~-----~~-------~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si 798 (1153)
T PLN03210 732 LDETAIEEFPSNL-RLENLDELILCEMKSEKLW-----ER-------VQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSI 798 (1153)
T ss_pred cCCCccccccccc-cccccccccccccchhhcc-----cc-------ccccchhhhhccccchheeCCCCCCccccChhh
Confidence 011111 2334444444332110000 00 0000000112357899999999854 4589999
Q ss_pred cCccCccEEEEcCcCCCCCCCCCCCCCCcceeeccccccceEeCccccCCcccccccccccCC---CcccccCcccceee
Q 038751 750 GSLNKLKMLTLNSFVKCEIMPPLGKLPSLEILRIWHMRSVKRVGDEFLGMEISDHIHIHGTSS---SSSVIAFPKLQKLE 826 (915)
Q Consensus 750 ~~l~~L~~L~L~~~~~~~~l~~l~~Lp~L~~L~L~~~~~l~~~~~~~~~~~~l~~l~l~~~~~---~~~~~~f~~L~~L~ 826 (915)
+++++|+.|+|++|..++.+|....+++|+.|++++|..++.+|.. ..+++.|++++|.+ +..+..+++|+.|+
T Consensus 799 ~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~ 875 (1153)
T PLN03210 799 QNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIEEVPWWIEKFSNLSFLD 875 (1153)
T ss_pred hCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccccccc---ccccCEeECCCCCCccChHHHhcCCCCCEEE
Confidence 9999999999999999999998778999999999999988877653 35678888988854 44567899999999
Q ss_pred ecCcccccccccCCCCcccCcccceeecccCccccCCCcCC-------------CCCCCcCeEeEcCCcchh
Q 038751 827 LTGMDELEEWDFGNDDITIMPHIKSLYITYCEKLKSLPELL-------------LRSTTLESLTIFGVPIVQ 885 (915)
Q Consensus 827 l~~~~~l~~~~~~~~~~~~lp~L~~L~l~~c~~L~~lp~~l-------------~~l~~L~~L~l~~c~~l~ 885 (915)
+.+|+++..++.. +..+++|+.|++.+|++|..++-.- ..+++...+.+.+|.+|.
T Consensus 876 L~~C~~L~~l~~~---~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~ 944 (1153)
T PLN03210 876 MNGCNNLQRVSLN---ISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLD 944 (1153)
T ss_pred CCCCCCcCccCcc---cccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccccccccCCC
Confidence 9999999988654 4588999999999999998654210 123344556777887764
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.73 E-value=5.3e-20 Score=196.66 Aligned_cols=291 Identities=21% Similarity=0.216 Sum_probs=204.3
Q ss_pred cceEEEEEEcccccc--CccccCCCCceeEEEeccCCCCceeccccchhccccCCcceeeecCCCCCccccccc-cCCCc
Q 038751 533 EKLRHLMLVLGFWAK--FPFSIFDAKTLHSLILVYSSNNQVAASPVLQGLFDQLTCLRALKIEDLPPTIKIPKG-LENLI 609 (915)
Q Consensus 533 ~~~r~Lsl~~~~~~~--~~~~~~~~~~Lr~L~l~~~~~~lrv~~~~lp~~i~~L~~Lr~L~l~~~~~~~~lP~~-i~~L~ 609 (915)
+.+|.+.+..|.+.. +|..+.++..|.+|+++.| .+.+.|..+..-+++-+|+|++|.+. .+|.. +-+|+
T Consensus 78 p~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShN------qL~EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLt 150 (1255)
T KOG0444|consen 78 PRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHN------QLREVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLT 150 (1255)
T ss_pred hhhHHHhhhccccccCCCCchhcccccceeeecchh------hhhhcchhhhhhcCcEEEEcccCccc-cCCchHHHhhH
Confidence 345555555555433 6667777777777777766 56667878888888888888887776 77776 46888
Q ss_pred CCCcccC-----cccCCcCCCCCCCCccCceeecccCCccCCCCcCCCCCcCccccccceeEcCccCCCChhhHhHhhcc
Q 038751 610 HLRYLKL-----SMVPNGIERLTSLRTLSEFAVARVGGKYSSKSCNLEGLRPLNHLRGFLQISGLGNVTDADEAKNAHLE 684 (915)
Q Consensus 610 ~Lr~L~l-----~~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~ 684 (915)
.|-+||+ ..+|+.+..|.+||+|.++++... ...+..|+.++.|. .|.+++ -......++..+.
T Consensus 151 DLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~-------hfQLrQLPsmtsL~-vLhms~---TqRTl~N~Ptsld 219 (1255)
T KOG0444|consen 151 DLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLN-------HFQLRQLPSMTSLS-VLHMSN---TQRTLDNIPTSLD 219 (1255)
T ss_pred hHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhh-------HHHHhcCccchhhh-hhhccc---ccchhhcCCCchh
Confidence 8888884 468888888888998887655432 23455556666555 444443 2333445566677
Q ss_pred CCCCCCceEEEEecCCCCchhhhhhhhhHHHHhhHHHHHhhcCCCCCcceEEEeeeCCCCCCCcccCccCccEEEEcCcC
Q 038751 685 KKKNLIDLILIFNEREESDDEKASEEMNEEKEAKHEAVCEALRPPPDIKSLEIMVFKGRTPSNWIGSLNKLKMLTLNSFV 764 (915)
Q Consensus 685 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~ 764 (915)
.+.+|..++++.|.. ..+++.+-.+++|++|++++|..+.+....+...+|++|+|+.|
T Consensus 220 ~l~NL~dvDlS~N~L--------------------p~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrN- 278 (1255)
T KOG0444|consen 220 DLHNLRDVDLSENNL--------------------PIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRN- 278 (1255)
T ss_pred hhhhhhhccccccCC--------------------CcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccc-
Confidence 777888888887742 23566667778888888888887777655566778888888877
Q ss_pred CCCCCCC-CCCCCCcceeeccccccceEeCccccCCcccccccccccCCCcccccCcccceeeecCcccccccccCCCCc
Q 038751 765 KCEIMPP-LGKLPSLEILRIWHMRSVKRVGDEFLGMEISDHIHIHGTSSSSSVIAFPKLQKLELTGMDELEEWDFGNDDI 843 (915)
Q Consensus 765 ~~~~l~~-l~~Lp~L~~L~L~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~ 843 (915)
.+..+|. +..|+.|+.|.+.++. +.. . .++.+++.+.+|+.+...+. +|+-. ++++
T Consensus 279 QLt~LP~avcKL~kL~kLy~n~Nk-L~F-----e-------------GiPSGIGKL~~Levf~aanN-~LElV---PEgl 335 (1255)
T KOG0444|consen 279 QLTVLPDAVCKLTKLTKLYANNNK-LTF-----E-------------GIPSGIGKLIQLEVFHAANN-KLELV---PEGL 335 (1255)
T ss_pred hhccchHHHhhhHHHHHHHhccCc-ccc-----c-------------CCccchhhhhhhHHHHhhcc-ccccC---chhh
Confidence 3445554 6777888877776543 221 1 22344677888888888764 34444 4457
Q ss_pred ccCcccceeecccCccccCCCcCCCCCCCcCeEeEcCCcchhH
Q 038751 844 TIMPHIKSLYITYCEKLKSLPELLLRSTTLESLTIFGVPIVQE 886 (915)
Q Consensus 844 ~~lp~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~c~~l~~ 886 (915)
+.++.|+.|.++ |..|-.+|++|.-++.|+.|+++++|+|.-
T Consensus 336 cRC~kL~kL~L~-~NrLiTLPeaIHlL~~l~vLDlreNpnLVM 377 (1255)
T KOG0444|consen 336 CRCVKLQKLKLD-HNRLITLPEAIHLLPDLKVLDLRENPNLVM 377 (1255)
T ss_pred hhhHHHHHhccc-ccceeechhhhhhcCCcceeeccCCcCccC
Confidence 899999999998 668999999999999999999999999764
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.62 E-value=8.2e-17 Score=171.79 Aligned_cols=328 Identities=16% Similarity=0.169 Sum_probs=208.8
Q ss_pred cceEEEEEEcccccc-CccccCCCCceeEEEeccCCCCceeccccchhccccCCcceeeecCCCCCccccccccCCCcCC
Q 038751 533 EKLRHLMLVLGFWAK-FPFSIFDAKTLHSLILVYSSNNQVAASPVLQGLFDQLTCLRALKIEDLPPTIKIPKGLENLIHL 611 (915)
Q Consensus 533 ~~~r~Lsl~~~~~~~-~~~~~~~~~~Lr~L~l~~~~~~lrv~~~~lp~~i~~L~~Lr~L~l~~~~~~~~lP~~i~~L~~L 611 (915)
...+.|++++|.+.. .+..+.++++|+.+.+.+| .+..+|...+...||+.|+|.+|.++..-.+++..+.-|
T Consensus 78 ~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N------~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~al 151 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKN------ELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPAL 151 (873)
T ss_pred cceeeeeccccccccCcHHHHhcCCcceeeeeccc------hhhhcccccccccceeEEeeeccccccccHHHHHhHhhh
Confidence 567889999998876 4566789999999999888 678899988899999999999887774444568888899
Q ss_pred CcccC-----cccCC-cCCCCCCCCccCceeecccCCccCCCCcCCCCCcCccccccceeEcCccCCCChhhHhHhhccC
Q 038751 612 RYLKL-----SMVPN-GIERLTSLRTLSEFAVARVGGKYSSKSCNLEGLRPLNHLRGFLQISGLGNVTDADEAKNAHLEK 685 (915)
Q Consensus 612 r~L~l-----~~lP~-~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~ 685 (915)
|.||+ +.+|. .+..-.++++|++..+...... ...+..|.+|. .|.+.. +.....-...+++
T Consensus 152 rslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~----~~~F~~lnsL~----tlkLsr----NrittLp~r~Fk~ 219 (873)
T KOG4194|consen 152 RSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLE----TGHFDSLNSLL----TLKLSR----NRITTLPQRSFKR 219 (873)
T ss_pred hhhhhhhchhhcccCCCCCCCCCceEEeeccccccccc----cccccccchhe----eeeccc----CcccccCHHHhhh
Confidence 99994 45653 3556678888887766554321 22334444443 333332 2222333345677
Q ss_pred CCCCCceEEEEecCCC-----CchhhhhhhhhHHHHhhHHHH-HhhcCCCCCcceEEEeeeCCCCC-CCcccCccCccEE
Q 038751 686 KKNLIDLILIFNEREE-----SDDEKASEEMNEEKEAKHEAV-CEALRPPPDIKSLEIMVFKGRTP-SNWIGSLNKLKML 758 (915)
Q Consensus 686 l~~L~~L~L~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~-p~~~~~l~~L~~L 758 (915)
+++|+.|+|..|...- +....+..... ......... -..+-.+.++++|++..|..... -.|+-.|..|+.|
T Consensus 220 L~~L~~LdLnrN~irive~ltFqgL~Sl~nlk-lqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L 298 (873)
T KOG4194|consen 220 LPKLESLDLNRNRIRIVEGLTFQGLPSLQNLK-LQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQL 298 (873)
T ss_pred cchhhhhhccccceeeehhhhhcCchhhhhhh-hhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhh
Confidence 8888888887764320 00000000000 000000000 00112345566666666655444 4677788888888
Q ss_pred EEcCcCCCC-CCCCCCCCCCcceeeccccccceEeCcc-ccCCcccccccccccCCCc----ccccCcccceeeecCccc
Q 038751 759 TLNSFVKCE-IMPPLGKLPSLEILRIWHMRSVKRVGDE-FLGMEISDHIHIHGTSSSS----SVIAFPKLQKLELTGMDE 832 (915)
Q Consensus 759 ~L~~~~~~~-~l~~l~~Lp~L~~L~L~~~~~l~~~~~~-~~~~~~l~~l~l~~~~~~~----~~~~f~~L~~L~l~~~~~ 832 (915)
+|++|.... .+......++|++|+|+++. ++.++.+ |.....++.|.+++|++.. .+.++.+|++|++.+..
T Consensus 299 ~lS~NaI~rih~d~WsftqkL~~LdLs~N~-i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~- 376 (873)
T KOG4194|consen 299 DLSYNAIQRIHIDSWSFTQKLKELDLSSNR-ITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNE- 376 (873)
T ss_pred ccchhhhheeecchhhhcccceeEeccccc-cccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCe-
Confidence 888775333 34445677888888888776 6666544 3456677888888887643 23456777777777642
Q ss_pred ccccccCCC--CcccCcccceeecccCccccCCC-cCCCCCCCcCeEeEcCCcc
Q 038751 833 LEEWDFGND--DITIMPHIKSLYITYCEKLKSLP-ELLLRSTTLESLTIFGVPI 883 (915)
Q Consensus 833 l~~~~~~~~--~~~~lp~L~~L~l~~c~~L~~lp-~~l~~l~~L~~L~l~~c~~ 883 (915)
-+|.++.. .+..||+|++|.+.++ +++.+| ..+..+..|++|++-+++.
T Consensus 377 -ls~~IEDaa~~f~gl~~LrkL~l~gN-qlk~I~krAfsgl~~LE~LdL~~Nai 428 (873)
T KOG4194|consen 377 -LSWCIEDAAVAFNGLPSLRKLRLTGN-QLKSIPKRAFSGLEALEHLDLGDNAI 428 (873)
T ss_pred -EEEEEecchhhhccchhhhheeecCc-eeeecchhhhccCcccceecCCCCcc
Confidence 24554432 2447889999999887 788888 4577788999999888865
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.61 E-value=7.7e-18 Score=172.05 Aligned_cols=187 Identities=21% Similarity=0.140 Sum_probs=129.3
Q ss_pred cceEEEEEEccccccCccccCCCCceeEEEeccCCCCceeccccchhccccCCcceeeecCCCCCccccccccCCCcCCC
Q 038751 533 EKLRHLMLVLGFWAKFPFSIFDAKTLHSLILVYSSNNQVAASPVLQGLFDQLTCLRALKIEDLPPTIKIPKGLENLIHLR 612 (915)
Q Consensus 533 ~~~r~Lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~lrv~~~~lp~~i~~L~~Lr~L~l~~~~~~~~lP~~i~~L~~Lr 612 (915)
..++++.++.+...+.+.+++.+..|..|+..+| .+..+|..++++..|..|++.++... .+|+..-+++.|+
T Consensus 114 ~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N------~i~slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~m~~L~ 186 (565)
T KOG0472|consen 114 ISLVKLDCSSNELKELPDSIGRLLDLEDLDATNN------QISSLPEDMVNLSKLSKLDLEGNKLK-ALPENHIAMKRLK 186 (565)
T ss_pred hhhhhhhccccceeecCchHHHHhhhhhhhcccc------ccccCchHHHHHHHHHHhhccccchh-hCCHHHHHHHHHH
Confidence 4577788888887778888888888888887776 57788999999999999998888877 8888877799999
Q ss_pred ccc-----CcccCCcCCCCCCCCccCceeecccCCccCCCCcCCCCCcCccccccceeEcCccCCCChhhHhHhh-ccCC
Q 038751 613 YLK-----LSMVPNGIERLTSLRTLSEFAVARVGGKYSSKSCNLEGLRPLNHLRGFLQISGLGNVTDADEAKNAH-LEKK 686 (915)
Q Consensus 613 ~L~-----l~~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~-l~~l 686 (915)
+|| +..+|+.++.|.+|..|++..+.... --.+.+...|. ++++.. +..+..++. ++.+
T Consensus 187 ~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~------lPef~gcs~L~----Elh~g~-----N~i~~lpae~~~~L 251 (565)
T KOG0472|consen 187 HLDCNSNLLETLPPELGGLESLELLYLRRNKIRF------LPEFPGCSLLK----ELHVGE-----NQIEMLPAEHLKHL 251 (565)
T ss_pred hcccchhhhhcCChhhcchhhhHHHHhhhccccc------CCCCCccHHHH----HHHhcc-----cHHHhhHHHHhccc
Confidence 998 77899999999999988776544322 11344444444 333321 223334443 4477
Q ss_pred CCCCceEEEEecCCCCchhhhhhhhhHHHHhhHHHHHhhcCCCCCcceEEEeeeCCCCCCCcccCccCccEEEEcC
Q 038751 687 KNLIDLILIFNEREESDDEKASEEMNEEKEAKHEAVCEALRPPPDIKSLEIMVFKGRTPSNWIGSLNKLKMLTLNS 762 (915)
Q Consensus 687 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~ 762 (915)
.+|..|++..|.. .++++.++.+.+|++|++++|..+.+|..++++ .|+.|-+.+
T Consensus 252 ~~l~vLDLRdNkl--------------------ke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leG 306 (565)
T KOG0472|consen 252 NSLLVLDLRDNKL--------------------KEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEG 306 (565)
T ss_pred ccceeeecccccc--------------------ccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcC
Confidence 8888888887743 334445555666677777776666666666655 555555544
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.58 E-value=2.3e-16 Score=168.36 Aligned_cols=303 Identities=19% Similarity=0.191 Sum_probs=193.8
Q ss_pred cceEEEEEEcccccc-CccccCCCCceeEEEeccCCCCceeccccch-hccccCCcceeeecCCCCCccccccccCCCcC
Q 038751 533 EKLRHLMLVLGFWAK-FPFSIFDAKTLHSLILVYSSNNQVAASPVLQ-GLFDQLTCLRALKIEDLPPTIKIPKGLENLIH 610 (915)
Q Consensus 533 ~~~r~Lsl~~~~~~~-~~~~~~~~~~Lr~L~l~~~~~~lrv~~~~lp-~~i~~L~~Lr~L~l~~~~~~~~lP~~i~~L~~ 610 (915)
..+.+|++.+|.+.. ...++..++.||+|+++.| .+.++| .+|..=.+|++|+|..|.+..-=-..+.+|.+
T Consensus 125 ghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN------~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lns 198 (873)
T KOG4194|consen 125 GHLEKLDLRHNLISSVTSEELSALPALRSLDLSRN------LISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNS 198 (873)
T ss_pred cceeEEeeeccccccccHHHHHhHhhhhhhhhhhc------hhhcccCCCCCCCCCceEEeeccccccccccccccccch
Confidence 457777777777665 2345666777888887776 455555 34555567888888777665222233566666
Q ss_pred CCccc-----CcccCCc-CCCCCCCCccCceeecccCCccCCCCcCCCCCcCccccccceeEcCccCCCChhhHhHhhcc
Q 038751 611 LRYLK-----LSMVPNG-IERLTSLRTLSEFAVARVGGKYSSKSCNLEGLRPLNHLRGFLQISGLGNVTDADEAKNAHLE 684 (915)
Q Consensus 611 Lr~L~-----l~~lP~~-i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~ 684 (915)
|-+|. ++.+|.. +.+|+.|+.|++-.+..... .+..+.+|.+|++|+ |.-.++..+ ....+-
T Consensus 199 L~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iriv----e~ltFqgL~Sl~nlk--lqrN~I~kL------~DG~Fy 266 (873)
T KOG4194|consen 199 LLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIV----EGLTFQGLPSLQNLK--LQRNDISKL------DDGAFY 266 (873)
T ss_pred heeeecccCcccccCHHHhhhcchhhhhhccccceeee----hhhhhcCchhhhhhh--hhhcCcccc------cCccee
Confidence 66665 5566654 44488888877654433221 134555555555444 222222222 223455
Q ss_pred CCCCCCceEEEEecCCCCchhhhhhhhhHHHHhhHHHHHhhcCCCCCcceEEEeeeCCCCC-CCcccCccCccEEEEcCc
Q 038751 685 KKKNLIDLILIFNEREESDDEKASEEMNEEKEAKHEAVCEALRPPPDIKSLEIMVFKGRTP-SNWIGSLNKLKMLTLNSF 763 (915)
Q Consensus 685 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-p~~~~~l~~L~~L~L~~~ 763 (915)
.+.++++|+|+.|... .---.++-.+..|+.|+++.|....+ ++.-+..++|+.|+|++|
T Consensus 267 ~l~kme~l~L~~N~l~-------------------~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N 327 (873)
T KOG4194|consen 267 GLEKMEHLNLETNRLQ-------------------AVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSN 327 (873)
T ss_pred eecccceeecccchhh-------------------hhhcccccccchhhhhccchhhhheeecchhhhcccceeEecccc
Confidence 6777888888877421 11123566677888888888876654 333346778888888877
Q ss_pred CCCCCCC--CCCCCCCcceeeccccccceEeCcc-ccCCcccccccccccCCCc-------ccccCcccceeeecCcccc
Q 038751 764 VKCEIMP--PLGKLPSLEILRIWHMRSVKRVGDE-FLGMEISDHIHIHGTSSSS-------SVIAFPKLQKLELTGMDEL 833 (915)
Q Consensus 764 ~~~~~l~--~l~~Lp~L~~L~L~~~~~l~~~~~~-~~~~~~l~~l~l~~~~~~~-------~~~~f~~L~~L~l~~~~~l 833 (915)
. +..++ .+..|..|++|.|+++. ++++-+. |.+..+++.|++.+|.+.. ...++++|++|.+.+. ++
T Consensus 328 ~-i~~l~~~sf~~L~~Le~LnLs~Ns-i~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gN-ql 404 (873)
T KOG4194|consen 328 R-ITRLDEGSFRVLSQLEELNLSHNS-IDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGN-QL 404 (873)
T ss_pred c-cccCChhHHHHHHHhhhhcccccc-hHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCc-ee
Confidence 4 33333 35667788888888776 6665433 4467788888888875533 3457999999999986 57
Q ss_pred cccccCCCCcccCcccceeecccCccccCC-CcCCCCCCCcCeEeEc
Q 038751 834 EEWDFGNDDITIMPHIKSLYITYCEKLKSL-PELLLRSTTLESLTIF 879 (915)
Q Consensus 834 ~~~~~~~~~~~~lp~L~~L~l~~c~~L~~l-p~~l~~l~~L~~L~l~ 879 (915)
+.++.. .+..++.|++|++.+++ +.++ |+.+..+ .|++|.+.
T Consensus 405 k~I~kr--Afsgl~~LE~LdL~~Na-iaSIq~nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 405 KSIPKR--AFSGLEALEHLDLGDNA-IASIQPNAFEPM-ELKELVMN 447 (873)
T ss_pred eecchh--hhccCcccceecCCCCc-ceeecccccccc-hhhhhhhc
Confidence 777643 25589999999999985 4555 6777777 88888764
No 11
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.56 E-value=7.4e-17 Score=172.84 Aligned_cols=261 Identities=23% Similarity=0.210 Sum_probs=187.6
Q ss_pred cceEEEEEEccccccCccccCCCCceeEEEeccCCCCceeccccchhc-cccCCcceeeecCCCCCccccccccCCCcCC
Q 038751 533 EKLRHLMLVLGFWAKFPFSIFDAKTLHSLILVYSSNNQVAASPVLQGL-FDQLTCLRALKIEDLPPTIKIPKGLENLIHL 611 (915)
Q Consensus 533 ~~~r~Lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~lrv~~~~lp~~-i~~L~~Lr~L~l~~~~~~~~lP~~i~~L~~L 611 (915)
..+..|+++.|.+.+.|..+...+++-.|.+++| .|+.+|.. +-+|..|-||||++|... .||+.+..|.+|
T Consensus 103 ~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N------~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~L 175 (1255)
T KOG0444|consen 103 KDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYN------NIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSML 175 (1255)
T ss_pred ccceeeecchhhhhhcchhhhhhcCcEEEEcccC------ccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhh
Confidence 6788899999999999999999999999999998 68889965 569999999999999887 999999999999
Q ss_pred CcccCcccCC------cCCCCCCCCccCceeecccCCccCCCCcCCCCCcCccccccceeEcCccCCCChhhHhHhhccC
Q 038751 612 RYLKLSMVPN------GIERLTSLRTLSEFAVARVGGKYSSKSCNLEGLRPLNHLRGFLQISGLGNVTDADEAKNAHLEK 685 (915)
Q Consensus 612 r~L~l~~lP~------~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~ 685 (915)
++|+++.-|- .+..|++|++|++++....- ...+..+..|.+| + .+.++. +.-...+..+-+
T Consensus 176 qtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl---~N~Ptsld~l~NL---~-dvDlS~-----N~Lp~vPecly~ 243 (1255)
T KOG0444|consen 176 QTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTL---DNIPTSLDDLHNL---R-DVDLSE-----NNLPIVPECLYK 243 (1255)
T ss_pred hhhhcCCChhhHHHHhcCccchhhhhhhcccccchh---hcCCCchhhhhhh---h-hccccc-----cCCCcchHHHhh
Confidence 9999988773 34566777777766544332 1123344444444 4 444432 111234566778
Q ss_pred CCCCCceEEEEecCCCCchhhhhhhhhHHHHhhHHHHHhhcCCCCCcceEEEeeeCCCCCCCcccCccCccEEEEcCcC-
Q 038751 686 KKNLIDLILIFNEREESDDEKASEEMNEEKEAKHEAVCEALRPPPDIKSLEIMVFKGRTPSNWIGSLNKLKMLTLNSFV- 764 (915)
Q Consensus 686 l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~- 764 (915)
+.+|+.|+|+.|.... .--......+|++|+++.|..+.+|+.+..|+.|++|.+.+|+
T Consensus 244 l~~LrrLNLS~N~ite--------------------L~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL 303 (1255)
T KOG0444|consen 244 LRNLRRLNLSGNKITE--------------------LNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKL 303 (1255)
T ss_pred hhhhheeccCcCceee--------------------eeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcc
Confidence 8999999999885321 0001122467899999999999999999999999999998886
Q ss_pred CCCCCCC-CCCCCCcceeeccccccceEeCccccCCcccccccccccC---CCcccccCcccceeeecCcccc
Q 038751 765 KCEIMPP-LGKLPSLEILRIWHMRSVKRVGDEFLGMEISDHIHIHGTS---SSSSVIAFPKLQKLELTGMDEL 833 (915)
Q Consensus 765 ~~~~l~~-l~~Lp~L~~L~L~~~~~l~~~~~~~~~~~~l~~l~l~~~~---~~~~~~~f~~L~~L~l~~~~~l 833 (915)
..+.+|+ +|.|.+|+++...++. ++.+|.+++....++.|.++.|. +++.+.-+|-|+.|++...++|
T Consensus 304 ~FeGiPSGIGKL~~Levf~aanN~-LElVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 304 TFEGIPSGIGKLIQLEVFHAANNK-LELVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred cccCCccchhhhhhhHHHHhhccc-cccCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCc
Confidence 3456665 8999999999998765 88888876654444444444442 2333344444444444444443
No 12
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.52 E-value=1.6e-12 Score=163.11 Aligned_cols=294 Identities=17% Similarity=0.220 Sum_probs=182.7
Q ss_pred cCccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCC-CCCHHHHHHH
Q 038751 170 VSDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSD-PFDEFRIAKA 248 (915)
Q Consensus 170 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~ 248 (915)
...++-|. +|.+.|... ...+++.|+|++|.||||++..+.+. ++.++|+++.. ..+...+...
T Consensus 13 ~~~~~~R~----rl~~~l~~~-----~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~ 77 (903)
T PRK04841 13 LHNTVVRE----RLLAKLSGA-----NNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASY 77 (903)
T ss_pred ccccCcch----HHHHHHhcc-----cCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHH
Confidence 34556665 444444321 25789999999999999999988752 23689999964 4566777788
Q ss_pred HHHHhhCCCCC-------------cccHHHHHHHHHHHhc--cCeEEEEEeCCCCCCccChhhhHHh-hhcCCCCceEEE
Q 038751 249 IIEGLEGSLPN-------------LRELNSLLEYIHTSIK--EKKFFLILDDVWPDDYSKWEPFHNC-LMNGLCGSRILV 312 (915)
Q Consensus 249 i~~~l~~~~~~-------------~~~~~~~~~~l~~~l~--~k~~LlVlDdvw~~~~~~~~~l~~~-l~~~~~gs~iiv 312 (915)
++..+....+. ..+...+...+...+. +.+++|||||++..+......+... +.....+.++||
T Consensus 78 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~ 157 (903)
T PRK04841 78 LIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVV 157 (903)
T ss_pred HHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEE
Confidence 88877532111 0122233333333332 6799999999976543444433333 444456778999
Q ss_pred EcCchH---HHhhhcCcCeEeCC----CCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCCCchHHHHHHhHhh
Q 038751 313 TTRKET---VARMMESTDVISIK----ELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKGLPLAAKTIGSLLR 385 (915)
Q Consensus 313 TtR~~~---v~~~~~~~~~~~l~----~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~PLai~~~~~~l~ 385 (915)
|||... ...........++. +|+.+|+.++|........ . .+...+|++.|+|+|+++..++..++
T Consensus 158 ~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~---~----~~~~~~l~~~t~Gwp~~l~l~~~~~~ 230 (903)
T PRK04841 158 LSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPI---E----AAESSRLCDDVEGWATALQLIALSAR 230 (903)
T ss_pred EeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCC---C----HHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 999742 11111113345566 9999999999987653221 1 23467799999999999998887765
Q ss_pred cCCCHHHHHHHHhhhccccccc-cccchHHHH-HhhcCCChHhhhHHhHhccCCCCcccChHHHHHHHHHcCCcccCCCc
Q 038751 386 FKKTREEWHIILNSEMWQLEEF-ERGLLAPLL-LSYNDLPSAIKRCFLYCAVFPKDYNLDKDELVKLWMAQGYIEQKGNI 463 (915)
Q Consensus 386 ~~~~~~~w~~~~~~~~~~~~~~-~~~~~~~l~-~sy~~L~~~~k~cf~~~s~fp~~~~i~~~~Li~~W~aeg~i~~~~~~ 463 (915)
....... ... +.+... ...+...+. -.|+.||++.+..+...|+++ .|+.+.+-.. ..
T Consensus 231 ~~~~~~~--~~~----~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~---~~~~~l~~~l------~~----- 290 (903)
T PRK04841 231 QNNSSLH--DSA----RRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR---SMNDALIVRV------TG----- 290 (903)
T ss_pred hCCCchh--hhh----HhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc---cCCHHHHHHH------cC-----
Confidence 4322100 000 111111 223555443 348899999999999999996 3343322221 11
Q ss_pred cHHHHHHHHHHHHHHcccccccccCCCCeeEEEechHHHHHHHHHh
Q 038751 464 EMEMTGEWYFDFLATRSFFQEFDEEKEGTVRCKMHDIVHDFAQYLT 509 (915)
Q Consensus 464 ~~e~~~~~~l~~L~~~sll~~~~~~~~~~~~~~mHdlv~d~a~~~~ 509 (915)
.+.+...+++|.+.++|....+..+ .+|+.|++++++++...
T Consensus 291 --~~~~~~~L~~l~~~~l~~~~~~~~~--~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 291 --EENGQMRLEELERQGLFIQRMDDSG--EWFRYHPLFASFLRHRC 332 (903)
T ss_pred --CCcHHHHHHHHHHCCCeeEeecCCC--CEEehhHHHHHHHHHHH
Confidence 1223567999999999754322211 35788999999998765
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.51 E-value=3.1e-17 Score=167.70 Aligned_cols=218 Identities=18% Similarity=0.126 Sum_probs=133.2
Q ss_pred EEEEEEccccccCccccCCCCceeEEEeccCCCCceeccccchhccccCCcceeeecCCCCCccccccccCCCcCCCccc
Q 038751 536 RHLMLVLGFWAKFPFSIFDAKTLHSLILVYSSNNQVAASPVLQGLFDQLTCLRALKIEDLPPTIKIPKGLENLIHLRYLK 615 (915)
Q Consensus 536 r~Lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~lrv~~~~lp~~i~~L~~Lr~L~l~~~~~~~~lP~~i~~L~~Lr~L~ 615 (915)
..+..+.+.+..+|..+..+.+|+.|+++.+ ...++|++|+.+..|..|+..++..+ .+|.+++++.+|..|+
T Consensus 94 ~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n------~~~el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~ 166 (565)
T KOG0472|consen 94 KSLNVSHNKLSELPEQIGSLISLVKLDCSSN------ELKELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLD 166 (565)
T ss_pred HHhhcccchHhhccHHHhhhhhhhhhhcccc------ceeecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhh
Confidence 3344455555555666666666666666555 34556666666666666666666555 6666666666666555
Q ss_pred -----CcccCCcCCCCCCCCccCceeecccCCccCCCCcCCCCCcCccccccceeEcCccCCCChhhHhHhhccCCCCCC
Q 038751 616 -----LSMVPNGIERLTSLRTLSEFAVARVGGKYSSKSCNLEGLRPLNHLRGFLQISGLGNVTDADEAKNAHLEKKKNLI 690 (915)
Q Consensus 616 -----l~~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~l~~L~ 690 (915)
+..+|+..-+++.|++|++-.+--.. -..++..|..|. .|.+.. + .-.+.+.+.+|..|+
T Consensus 167 ~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~t--------lP~~lg~l~~L~-~LyL~~----N--ki~~lPef~gcs~L~ 231 (565)
T KOG0472|consen 167 LEGNKLKALPENHIAMKRLKHLDCNSNLLET--------LPPELGGLESLE-LLYLRR----N--KIRFLPEFPGCSLLK 231 (565)
T ss_pred ccccchhhCCHHHHHHHHHHhcccchhhhhc--------CChhhcchhhhH-HHHhhh----c--ccccCCCCCccHHHH
Confidence 34555555556666666544332221 122222222222 222211 0 011222455666666
Q ss_pred ceEEEEecCCCCchhhhhhhhhHHHHhhHHHHHhhcCCCCCcceEEEeeeCCCCCCCcccCccCccEEEEcCcCCCCCCC
Q 038751 691 DLILIFNEREESDDEKASEEMNEEKEAKHEAVCEALRPPPDIKSLEIMVFKGRTPSNWIGSLNKLKMLTLNSFVKCEIMP 770 (915)
Q Consensus 691 ~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~ 770 (915)
+|++..|. ....-.+.+..+++|..|+++.|.....|+.+..+.+|.+|+++++....-.+
T Consensus 232 Elh~g~N~-------------------i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~ 292 (565)
T KOG0472|consen 232 ELHVGENQ-------------------IEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLPY 292 (565)
T ss_pred HHHhcccH-------------------HHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccccCCc
Confidence 66666552 22222345668899999999999999999999999999999999996555555
Q ss_pred CCCCCCCcceeeccccccceEeCccc
Q 038751 771 PLGKLPSLEILRIWHMRSVKRVGDEF 796 (915)
Q Consensus 771 ~l~~Lp~L~~L~L~~~~~l~~~~~~~ 796 (915)
.+|+| +|+.|-+.|++ ++.+-.++
T Consensus 293 sLgnl-hL~~L~leGNP-lrTiRr~i 316 (565)
T KOG0472|consen 293 SLGNL-HLKFLALEGNP-LRTIRREI 316 (565)
T ss_pred ccccc-eeeehhhcCCc-hHHHHHHH
Confidence 69999 99999999987 55444443
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.46 E-value=5.6e-16 Score=174.50 Aligned_cols=244 Identities=22% Similarity=0.218 Sum_probs=141.6
Q ss_pred cceEEEEEEccccccCccccCCCCceeEEEeccCCCCceeccccchhccccCCcceeeecCCCCCccccccccCCCcCCC
Q 038751 533 EKLRHLMLVLGFWAKFPFSIFDAKTLHSLILVYSSNNQVAASPVLQGLFDQLTCLRALKIEDLPPTIKIPKGLENLIHLR 612 (915)
Q Consensus 533 ~~~r~Lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~lrv~~~~lp~~i~~L~~Lr~L~l~~~~~~~~lP~~i~~L~~Lr 612 (915)
-++..|++++|.+..+|..+..+.+|+.|.++.+ .+...|.+++++.+|+||+|.++... .+|.++..+++|+
T Consensus 45 v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n------~i~~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~ 117 (1081)
T KOG0618|consen 45 VKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRN------YIRSVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQ 117 (1081)
T ss_pred eeeEEeeccccccccCCchhhhHHHHhhcccchh------hHhhCchhhhhhhcchhheeccchhh-cCchhHHhhhccc
Confidence 3488899999988889999999999999999888 57778999999999999999887666 8999999999999
Q ss_pred cccCc-----ccCCcCCCCCCCCccCceeecccCCcc------------CCCCcCCCCCcCccccccceeEcCccCCCCh
Q 038751 613 YLKLS-----MVPNGIERLTSLRTLSEFAVARVGGKY------------SSKSCNLEGLRPLNHLRGFLQISGLGNVTDA 675 (915)
Q Consensus 613 ~L~l~-----~lP~~i~~L~~L~~L~~~~~~~~~~~~------------~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~ 675 (915)
+|+++ ..|.-|..++.+..+...++....... ...+..+.+...+++ .|.+.. +.
T Consensus 118 ~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~---~ldLr~----N~- 189 (1081)
T KOG0618|consen 118 YLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH---QLDLRY----NE- 189 (1081)
T ss_pred ccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe---eeeccc----ch-
Confidence 99943 466666666665555444331100000 000111111222221 111111 00
Q ss_pred hhHhHhhccCCCCCCceEEEEecCCCCchhhhhhhhhHHHHhhHHHHHhhcCCCCCcceEEEeeeCCCCCCCcccCccCc
Q 038751 676 DEAKNAHLEKKKNLIDLILIFNEREESDDEKASEEMNEEKEAKHEAVCEALRPPPDIKSLEIMVFKGRTPSNWIGSLNKL 755 (915)
Q Consensus 676 ~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L 755 (915)
.....+.++.+|+.|....|................... ..........-+.+|+.++++.+....+|+|++.+.+|
T Consensus 190 --~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~-n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nl 266 (1081)
T KOG0618|consen 190 --MEVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADH-NPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANL 266 (1081)
T ss_pred --hhhhhhhhccchhhhhhhhcccceEEecCcchheeeecc-CcceeeccccccccceeeecchhhhhcchHHHHhcccc
Confidence 112334444445544444332211000000000000000 00001222234678999999999999999999999999
Q ss_pred cEEEEcCcCCC----------------------CCCCC-CCCCCCcceeeccccccceEeCcc
Q 038751 756 KMLTLNSFVKC----------------------EIMPP-LGKLPSLEILRIWHMRSVKRVGDE 795 (915)
Q Consensus 756 ~~L~L~~~~~~----------------------~~l~~-l~~Lp~L~~L~L~~~~~l~~~~~~ 795 (915)
+.|....|... +.+|+ ++.+.+|++|+|..+. +..+|+.
T Consensus 267 e~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~-L~~lp~~ 328 (1081)
T KOG0618|consen 267 EALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNN-LPSLPDN 328 (1081)
T ss_pred eEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhcc-ccccchH
Confidence 99988766432 22232 3446666777776654 5555543
No 15
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.44 E-value=8e-11 Score=132.53 Aligned_cols=324 Identities=14% Similarity=0.078 Sum_probs=190.7
Q ss_pred ccccCccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHH
Q 038751 167 LINVSDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIA 246 (915)
Q Consensus 167 ~~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~ 246 (915)
...+..++||++|++++...+..... ......+.|+|++|+|||++++.++++.......-..+++++....+...++
T Consensus 26 ~~~P~~l~~Re~e~~~l~~~l~~~~~--~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~ 103 (394)
T PRK00411 26 DYVPENLPHREEQIEELAFALRPALR--GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIF 103 (394)
T ss_pred CCcCCCCCCHHHHHHHHHHHHHHHhC--CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHH
Confidence 33556899999999999999855322 2234557899999999999999999854322222345677777777888999
Q ss_pred HHHHHHhhCC-CC-CcccHHHHHHHHHHHhc--cCeEEEEEeCCCCCC-ccChhhhHHhhh--cCCCCce--EEEEcCch
Q 038751 247 KAIIEGLEGS-LP-NLRELNSLLEYIHTSIK--EKKFFLILDDVWPDD-YSKWEPFHNCLM--NGLCGSR--ILVTTRKE 317 (915)
Q Consensus 247 ~~i~~~l~~~-~~-~~~~~~~~~~~l~~~l~--~k~~LlVlDdvw~~~-~~~~~~l~~~l~--~~~~gs~--iivTtR~~ 317 (915)
..++.++... .+ .....+++...+.+.+. +++.+||+|+++.-. ....+.+...+. ....+++ +|.++...
T Consensus 104 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~ 183 (394)
T PRK00411 104 SEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDL 183 (394)
T ss_pred HHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCc
Confidence 9999998762 22 22345666677777664 456899999996532 112222332222 1122333 56665554
Q ss_pred HHHhhhc-------CcCeEeCCCCCHHHHHHHHHHhHcCC--CCCCchhHHHHHHHHHHHhcCCCchHHHHHHhHhh---
Q 038751 318 TVARMME-------STDVISIKELSEQECWSLFKRFAFSG--RSPTECEQLEEIGRKIVGKCKGLPLAAKTIGSLLR--- 385 (915)
Q Consensus 318 ~v~~~~~-------~~~~~~l~~L~~~~~~~lf~~~~~~~--~~~~~~~~l~~~~~~i~~~c~G~PLai~~~~~~l~--- 385 (915)
.+..... ....+.+.+++.++..+++..++... .....+..++.+++......|..+.|+..+-.+..
T Consensus 184 ~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~ 263 (394)
T PRK00411 184 TFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAE 263 (394)
T ss_pred chhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 3322211 13468999999999999998876322 11123344555555555556777888776643321
Q ss_pred -c-CC--CHHHHHHHHhhhccccccccccchHHHHHhhcCCChHhhhHHhHhccCCC--CcccChHHHHHH--HHHcCCc
Q 038751 386 -F-KK--TREEWHIILNSEMWQLEEFERGLLAPLLLSYNDLPSAIKRCFLYCAVFPK--DYNLDKDELVKL--WMAQGYI 457 (915)
Q Consensus 386 -~-~~--~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~~~s~fp~--~~~i~~~~Li~~--W~aeg~i 457 (915)
. .. +.++.....+.. -.....-.+..||.+.|..+..++..-+ ...+....+... .+++.+-
T Consensus 264 ~~~~~~I~~~~v~~a~~~~----------~~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~ 333 (394)
T PRK00411 264 REGSRKVTEEDVRKAYEKS----------EIVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELG 333 (394)
T ss_pred HcCCCCcCHHHHHHHHHHH----------HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcC
Confidence 1 11 344554444322 1122345688999988887766553321 134555555543 2332221
Q ss_pred ccCCCccHHHHHHHHHHHHHHcccccccccCC---CCeeEEEechHHHHHH
Q 038751 458 EQKGNIEMEMTGEWYFDFLATRSFFQEFDEEK---EGTVRCKMHDIVHDFA 505 (915)
Q Consensus 458 ~~~~~~~~e~~~~~~l~~L~~~sll~~~~~~~---~~~~~~~mHdlv~d~a 505 (915)
.. ..+ ......|+.+|...|+|.....+. |+.+.++++.---++.
T Consensus 334 ~~--~~~-~~~~~~~l~~L~~~glI~~~~~~~g~~g~~~~~~~~~~~~~~~ 381 (394)
T PRK00411 334 YE--PRT-HTRFYEYINKLDMLGIINTRYSGKGGRGRTRLISLSYDPEDVL 381 (394)
T ss_pred CC--cCc-HHHHHHHHHHHHhcCCeEEEEecCCCCCCeEEEEecCCHHHHH
Confidence 11 011 233466999999999998754321 5556666653333333
No 16
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.39 E-value=1.4e-13 Score=164.48 Aligned_cols=286 Identities=27% Similarity=0.262 Sum_probs=188.4
Q ss_pred cceEEEEEEccc--cccCcc-ccCCCCceeEEEeccCCCCceeccccchhccccCCcceeeecCCCCCccccccccCCCc
Q 038751 533 EKLRHLMLVLGF--WAKFPF-SIFDAKTLHSLILVYSSNNQVAASPVLQGLFDQLTCLRALKIEDLPPTIKIPKGLENLI 609 (915)
Q Consensus 533 ~~~r~Lsl~~~~--~~~~~~-~~~~~~~Lr~L~l~~~~~~lrv~~~~lp~~i~~L~~Lr~L~l~~~~~~~~lP~~i~~L~ 609 (915)
.+++.|-+..+. ....+. .+..++.||+|++++|. .+.++|++|++|.|||||+++++... .+|.++++|+
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~-----~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk 618 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNS-----SLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLK 618 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCC-----ccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHH
Confidence 468888888775 332333 36789999999999987 78889999999999999999999988 9999999999
Q ss_pred CCCcccCc------ccCCcCCCCCCCCccCceeecccCCccCCCCcCCCCCcCccccccceeEcCccC-----C------
Q 038751 610 HLRYLKLS------MVPNGIERLTSLRTLSEFAVARVGGKYSSKSCNLEGLRPLNHLRGFLQISGLGN-----V------ 672 (915)
Q Consensus 610 ~Lr~L~l~------~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~-----~------ 672 (915)
.|.|||+. .+|..+..|++|++|.++...... ....++++.+|++|+ .+.+..... .
T Consensus 619 ~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~-----~~~~l~el~~Le~L~-~ls~~~~s~~~~e~l~~~~~L 692 (889)
T KOG4658|consen 619 KLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSN-----DKLLLKELENLEHLE-NLSITISSVLLLEDLLGMTRL 692 (889)
T ss_pred hhheeccccccccccccchhhhcccccEEEeecccccc-----chhhHHhhhcccchh-hheeecchhHhHhhhhhhHHH
Confidence 99999954 334444559999999887654111 145566666666666 444432111 0
Q ss_pred ----------CChhhHhHhhccCCCCCCceEEEEecCCCCchhhhhhhhhHHHHhhHHHHHhhcC---CCCCcceEEEee
Q 038751 673 ----------TDADEAKNAHLEKKKNLIDLILIFNEREESDDEKASEEMNEEKEAKHEAVCEALR---PPPDIKSLEIMV 739 (915)
Q Consensus 673 ----------~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~L~~L~l~~ 739 (915)
..........+..+.+|+.|.+..+..... .....+... .++++..+.+.+
T Consensus 693 ~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~----------------~~~~~~~~~~~~~f~~l~~~~~~~ 756 (889)
T KOG4658|consen 693 RSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEI----------------VIEWEESLIVLLCFPNLSKVSILN 756 (889)
T ss_pred HHHhHhhhhcccccceeecccccccCcceEEEEcCCCchh----------------hcccccccchhhhHHHHHHHHhhc
Confidence 001112234455677888888887754310 000001111 245677777777
Q ss_pred eCCCCCCCcccCccCccEEEEcCcCCCC-CCCCCCCCCCcceeeccccccceEeCccccCCcccccccccccCCCccccc
Q 038751 740 FKGRTPSNWIGSLNKLKMLTLNSFVKCE-IMPPLGKLPSLEILRIWHMRSVKRVGDEFLGMEISDHIHIHGTSSSSSVIA 818 (915)
Q Consensus 740 ~~~~~~p~~~~~l~~L~~L~L~~~~~~~-~l~~l~~Lp~L~~L~L~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~ 818 (915)
+.....+.|....++|+.|.+..|...+ .+|....+..++.+.+..+. +...+ .. ...++
T Consensus 757 ~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~-~~~l~-~~-----------------~~l~~ 817 (889)
T KOG4658|consen 757 CHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNK-LEGLR-ML-----------------CSLGG 817 (889)
T ss_pred cccccccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccc-cccce-ee-----------------ecCCC
Confidence 8777888898899999999999998766 45555666666654333221 11111 00 01346
Q ss_pred CcccceeeecCcccccccccCC-CCcccCcccceeecccC-ccccCCCcC
Q 038751 819 FPKLQKLELTGMDELEEWDFGN-DDITIMPHIKSLYITYC-EKLKSLPEL 866 (915)
Q Consensus 819 f~~L~~L~l~~~~~l~~~~~~~-~~~~~lp~L~~L~l~~c-~~L~~lp~~ 866 (915)
|+++..+.+.... ++.|.++. .....||.+..+.+.+| +++..+|+.
T Consensus 818 l~~i~~~~l~~~~-l~~~~ve~~p~l~~~P~~~~~~i~~~~~~~~~~~~~ 866 (889)
T KOG4658|consen 818 LPQLYWLPLSFLK-LEELIVEECPKLGKLPLLSTLTIVGCEEKLKEYPDG 866 (889)
T ss_pred CceeEecccCccc-hhheehhcCcccccCccccccceeccccceeecCCc
Confidence 6666666665543 55565443 11347999999999997 888889976
No 17
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.32 E-value=7.5e-11 Score=133.61 Aligned_cols=292 Identities=19% Similarity=0.235 Sum_probs=191.1
Q ss_pred HHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCC-CCHHHHHHHHHHHhhCCCC
Q 038751 180 KNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDP-FDEFRIAKAIIEGLEGSLP 258 (915)
Q Consensus 180 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~ 258 (915)
+.++++.|... .+.+.+.|..++|.|||||+-..+.- ...=..++|.+.... .++..+...++..+..-.+
T Consensus 24 R~rL~~~L~~~-----~~~RL~li~APAGfGKttl~aq~~~~---~~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p 95 (894)
T COG2909 24 RPRLLDRLRRA-----NDYRLILISAPAGFGKTTLLAQWREL---AADGAAVAWLSLDESDNDPARFLSYLIAALQQATP 95 (894)
T ss_pred cHHHHHHHhcC-----CCceEEEEeCCCCCcHHHHHHHHHHh---cCcccceeEeecCCccCCHHHHHHHHHHHHHHhCc
Confidence 34566666432 36899999999999999999888651 122245899998765 6788899999998875333
Q ss_pred Cc-------------ccHHHHHHHHHHHhc--cCeEEEEEeCCCCCCccChhh-hHHhhhcCCCCceEEEEcCchHH---
Q 038751 259 NL-------------RELNSLLEYIHTSIK--EKKFFLILDDVWPDDYSKWEP-FHNCLMNGLCGSRILVTTRKETV--- 319 (915)
Q Consensus 259 ~~-------------~~~~~~~~~l~~~l~--~k~~LlVlDdvw~~~~~~~~~-l~~~l~~~~~gs~iivTtR~~~v--- 319 (915)
+. .+...+.+.+...+. .++..+||||.+-......+. +.-.+.+...+-..|||||+..-
T Consensus 96 ~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~l 175 (894)
T COG2909 96 TLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGL 175 (894)
T ss_pred cccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCcc
Confidence 22 223334444444443 568999999987544334444 55555667789999999998642
Q ss_pred HhhhcCcCeEeCC----CCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCCCchHHHHHHhHhhcCCCHHHHHH
Q 038751 320 ARMMESTDVISIK----ELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKGLPLAAKTIGSLLRFKKTREEWHI 395 (915)
Q Consensus 320 ~~~~~~~~~~~l~----~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~PLai~~~~~~l~~~~~~~~w~~ 395 (915)
++.--.....++. .|+.+|+-++|.......- + +.-.+.+.+..+|.+-|+..++-.++.+.+.+.-..
T Consensus 176 a~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~L---d----~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~ 248 (894)
T COG2909 176 ARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPL---D----AADLKALYDRTEGWAAALQLIALALRNNTSAEQSLR 248 (894)
T ss_pred cceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCC---C----hHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhh
Confidence 2211112333443 5899999999988753222 1 223577899999999999999888874444333332
Q ss_pred HHhhhccccccccccchHH-HHHhhcCCChHhhhHHhHhccCCCCcccChHHHHHHHHHcCCcccCCCccHHHHHHHHHH
Q 038751 396 ILNSEMWQLEEFERGLLAP-LLLSYNDLPSAIKRCFLYCAVFPKDYNLDKDELVKLWMAQGYIEQKGNIEMEMTGEWYFD 474 (915)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~-l~~sy~~L~~~~k~cf~~~s~fp~~~~i~~~~Li~~W~aeg~i~~~~~~~~e~~~~~~l~ 474 (915)
.+. ....-+... ..=-++.||+++|..++.||+++.- -+.|...-. .++-+...++
T Consensus 249 ~Ls-------G~~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~f----~~eL~~~Lt------------g~~ng~amLe 305 (894)
T COG2909 249 GLS-------GAASHLSDYLVEEVLDRLPPELRDFLLQTSVLSRF----NDELCNALT------------GEENGQAMLE 305 (894)
T ss_pred hcc-------chHHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHh----hHHHHHHHh------------cCCcHHHHHH
Confidence 221 111112222 2345789999999999999999652 123333221 2345677899
Q ss_pred HHHHcccccccccCCCCeeEEEechHHHHHHHHHhhh
Q 038751 475 FLATRSFFQEFDEEKEGTVRCKMHDIVHDFAQYLTRK 511 (915)
Q Consensus 475 ~L~~~sll~~~~~~~~~~~~~~mHdlv~d~a~~~~~~ 511 (915)
+|.+++||-..-++. ..+|+.|.++.||.+..-..
T Consensus 306 ~L~~~gLFl~~Ldd~--~~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 306 ELERRGLFLQRLDDE--GQWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred HHHhCCCceeeecCC--CceeehhHHHHHHHHhhhcc
Confidence 999999987543332 24799999999998765443
No 18
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.31 E-value=1.4e-09 Score=121.20 Aligned_cols=303 Identities=12% Similarity=0.087 Sum_probs=175.2
Q ss_pred ccCccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccc-cCC---CeEEEEEeCCCCCHHH
Q 038751 169 NVSDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVI-ENF---DKRIWVCVSDPFDEFR 244 (915)
Q Consensus 169 ~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F---~~~~wv~vs~~~~~~~ 244 (915)
.+..++||++|+++|...|..... ......+.|+|++|+|||++++.++++.... ... -..+|+++....+...
T Consensus 13 ~p~~l~gRe~e~~~l~~~l~~~~~--~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~ 90 (365)
T TIGR02928 13 VPDRIVHRDEQIEELAKALRPILR--GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQ 90 (365)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHH
Confidence 345799999999999999975322 2234578999999999999999999853211 111 1356888877778889
Q ss_pred HHHHHHHHhh---CCCC-CcccHHHHHHHHHHHhc--cCeEEEEEeCCCCCCccChhhhHHhhhc-----CC--CCceEE
Q 038751 245 IAKAIIEGLE---GSLP-NLRELNSLLEYIHTSIK--EKKFFLILDDVWPDDYSKWEPFHNCLMN-----GL--CGSRIL 311 (915)
Q Consensus 245 ~~~~i~~~l~---~~~~-~~~~~~~~~~~l~~~l~--~k~~LlVlDdvw~~~~~~~~~l~~~l~~-----~~--~gs~ii 311 (915)
++..|++++. ...+ ...+..++...+.+.+. +++++||||+++.-. ...+.+...+.. .. ....+|
T Consensus 91 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~-~~~~~~L~~l~~~~~~~~~~~~~v~lI 169 (365)
T TIGR02928 91 VLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLV-GDDDDLLYQLSRARSNGDLDNAKVGVI 169 (365)
T ss_pred HHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhc-cCCcHHHHhHhccccccCCCCCeEEEE
Confidence 9999999984 2221 12234455555655553 568899999996531 111222222211 11 223445
Q ss_pred EEcCchHHHhhhc-----C--cCeEeCCCCCHHHHHHHHHHhHcCC-CCCCchhHHHHHHHHHHHhcCCCchHHHHHHhH
Q 038751 312 VTTRKETVARMME-----S--TDVISIKELSEQECWSLFKRFAFSG-RSPTECEQLEEIGRKIVGKCKGLPLAAKTIGSL 383 (915)
Q Consensus 312 vTtR~~~v~~~~~-----~--~~~~~l~~L~~~~~~~lf~~~~~~~-~~~~~~~~l~~~~~~i~~~c~G~PLai~~~~~~ 383 (915)
.+|........+. . ...+.+.+++.++..+++..++... ......++..+...+++..+.|.|..+..+...
T Consensus 170 ~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~ 249 (365)
T TIGR02928 170 GISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRV 249 (365)
T ss_pred EEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 5554433221111 1 2468999999999999999886411 111222333345556677777888554333221
Q ss_pred -h----hcC---CCHHHHHHHHhhhccccccccccchHHHHHhhcCCChHhhhHHhHhccCC--CCcccChHHHHHHH--
Q 038751 384 -L----RFK---KTREEWHIILNSEMWQLEEFERGLLAPLLLSYNDLPSAIKRCFLYCAVFP--KDYNLDKDELVKLW-- 451 (915)
Q Consensus 384 -l----~~~---~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~~~s~fp--~~~~i~~~~Li~~W-- 451 (915)
. ... -+.++.....+.. -.....-++..||.+.+..+..++..- .+..+...++...+
T Consensus 250 a~~~a~~~~~~~it~~~v~~a~~~~----------~~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~ 319 (365)
T TIGR02928 250 AGEIAEREGAERVTEDHVEKAQEKI----------EKDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKE 319 (365)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHH----------HHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHH
Confidence 1 111 1233333332211 012234567799998887666554221 33446666666633
Q ss_pred HHcCCcccCCCccHHHHHHHHHHHHHHccccccccc
Q 038751 452 MAQGYIEQKGNIEMEMTGEWYFDFLATRSFFQEFDE 487 (915)
Q Consensus 452 ~aeg~i~~~~~~~~e~~~~~~l~~L~~~sll~~~~~ 487 (915)
+++.+ ... .........++..|...|++.....
T Consensus 320 ~~~~~-~~~--~~~~~~~~~~l~~l~~~gli~~~~~ 352 (365)
T TIGR02928 320 VCEDI-GVD--PLTQRRISDLLNELDMLGLVEAEER 352 (365)
T ss_pred HHHhc-CCC--CCcHHHHHHHHHHHHhcCCeEEEEE
Confidence 22211 111 1124566778999999999997643
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.30 E-value=6.8e-12 Score=146.82 Aligned_cols=74 Identities=20% Similarity=0.319 Sum_probs=49.4
Q ss_pred cccccccccCCCcccccCcccceeeecCcccccccccCCCCcccCcccceeecccCccccCCCcCCCCCCCcCeEeEcCC
Q 038751 802 SDHIHIHGTSSSSSVIAFPKLQKLELTGMDELEEWDFGNDDITIMPHIKSLYITYCEKLKSLPELLLRSTTLESLTIFGV 881 (915)
Q Consensus 802 l~~l~l~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~lp~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~c 881 (915)
++.|++++|.+......+++|+.|+++++. +..++. .+.+|+.|++++| ++..+|..+.++++|+.|++++|
T Consensus 384 L~~LdLs~N~Lt~LP~l~s~L~~LdLS~N~-LssIP~------l~~~L~~L~Ls~N-qLt~LP~sl~~L~~L~~LdLs~N 455 (788)
T PRK15387 384 LKELIVSGNRLTSLPVLPSELKELMVSGNR-LTSLPM------LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGN 455 (788)
T ss_pred cceEEecCCcccCCCCcccCCCEEEccCCc-CCCCCc------chhhhhhhhhccC-cccccChHHhhccCCCeEECCCC
Confidence 334444444332212234678888888863 554432 2457888888877 67889988888999999999988
Q ss_pred cc
Q 038751 882 PI 883 (915)
Q Consensus 882 ~~ 883 (915)
|.
T Consensus 456 ~L 457 (788)
T PRK15387 456 PL 457 (788)
T ss_pred CC
Confidence 65
No 20
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.25 E-value=5.5e-10 Score=118.72 Aligned_cols=182 Identities=15% Similarity=0.102 Sum_probs=115.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHH----H
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLRELNSLLEYIHT----S 273 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~----~ 273 (915)
.+++.|+|++|+||||+++.+++.... ..+ ..+|+ +....+..+++..|...++....+ .+.......+.. .
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~-~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~-~~~~~~~~~l~~~l~~~ 118 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQ-ERV-VAAKL-VNTRVDAEDLLRMVAADFGLETEG-RDKAALLRELEDFLIEQ 118 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCC-CCe-EEeee-eCCCCCHHHHHHHHHHHcCCCCCC-CCHHHHHHHHHHHHHHH
Confidence 468999999999999999999985331 111 22333 334567788899998888654332 222223333332 2
Q ss_pred -hccCeEEEEEeCCCCCCccChhhhHHhhhcC---CCCceEEEEcCchHHHhhhc----------CcCeEeCCCCCHHHH
Q 038751 274 -IKEKKFFLILDDVWPDDYSKWEPFHNCLMNG---LCGSRILVTTRKETVARMME----------STDVISIKELSEQEC 339 (915)
Q Consensus 274 -l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~---~~gs~iivTtR~~~v~~~~~----------~~~~~~l~~L~~~~~ 339 (915)
..+++.++|+||+|..+...++.+....... .....|++|.... ....+. ....+++++++.+|.
T Consensus 119 ~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~ 197 (269)
T TIGR03015 119 FAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREET 197 (269)
T ss_pred HhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHHH
Confidence 2678899999999876655666665432211 1223445555432 221111 134678999999999
Q ss_pred HHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCCCchHHHHHHhHh
Q 038751 340 WSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKGLPLAAKTIGSLL 384 (915)
Q Consensus 340 ~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~PLai~~~~~~l 384 (915)
.+++..++..........--.+..+.|++.++|.|..|..++..+
T Consensus 198 ~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 198 REYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 999987764322111111224678889999999999999998776
No 21
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.21 E-value=7.3e-13 Score=149.81 Aligned_cols=328 Identities=20% Similarity=0.169 Sum_probs=198.0
Q ss_pred cceEEEEEEccccccCccccCCCCceeEEEeccCCCCceeccccchhccccCCcceeeecCCCCCccccccccCCCcCCC
Q 038751 533 EKLRHLMLVLGFWAKFPFSIFDAKTLHSLILVYSSNNQVAASPVLQGLFDQLTCLRALKIEDLPPTIKIPKGLENLIHLR 612 (915)
Q Consensus 533 ~~~r~Lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~lrv~~~~lp~~i~~L~~Lr~L~l~~~~~~~~lP~~i~~L~~Lr 612 (915)
..++.+.++.|.+...|.+..++++|++|.+.++ .+..+|.++..+++|+|||++.+... ..|..|..+..+.
T Consensus 68 ~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n------~l~~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~ 140 (1081)
T KOG0618|consen 68 SHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNN------RLQSLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEE 140 (1081)
T ss_pred HHHhhcccchhhHhhCchhhhhhhcchhheeccc------hhhcCchhHHhhhcccccccchhccC-CCchhHHhhhHHH
Confidence 5688899999999889999999999999999888 57889999999999999999887665 5665555444443
Q ss_pred cccCc-------------------------ccCCcCCCCCCCCccCceeecccCCccCCCCcCCCCCcCcccccc-----
Q 038751 613 YLKLS-------------------------MVPNGIERLTSLRTLSEFAVARVGGKYSSKSCNLEGLRPLNHLRG----- 662 (915)
Q Consensus 613 ~L~l~-------------------------~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~----- 662 (915)
.++.+ .++.++.+++. +|++..+.... ..+..+.+|+.|.-
T Consensus 141 ~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~-------~dls~~~~l~~l~c~rn~l 211 (1081)
T KOG0618|consen 141 ELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEV-------LDLSNLANLEVLHCERNQL 211 (1081)
T ss_pred HHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhhh-------hhhhhccchhhhhhhhccc
Confidence 33311 22333444443 23322221110 00011111110000
Q ss_pred -ceeEcCc---------------------------cCCCChhhHhHhhccCCCCCCceEEEEecCCCCchhhhhhh-hhH
Q 038751 663 -FLQISGL---------------------------GNVTDADEAKNAHLEKKKNLIDLILIFNEREESDDEKASEE-MNE 713 (915)
Q Consensus 663 -~L~i~~l---------------------------~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~-~~~ 713 (915)
.+.+.+. .--.+.-...+.++..+.+|+.|....|....-+.+..... +..
T Consensus 212 s~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~ 291 (1081)
T KOG0618|consen 212 SELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVS 291 (1081)
T ss_pred ceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHH
Confidence 1111110 00001112233556666777777776664321111111100 000
Q ss_pred HH--HhhHHHHHhhcCCCCCcceEEEeeeCCCCCCCccc--------------------------CccCccEEEEcCcCC
Q 038751 714 EK--EAKHEAVCEALRPPPDIKSLEIMVFKGRTPSNWIG--------------------------SLNKLKMLTLNSFVK 765 (915)
Q Consensus 714 ~~--~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~--------------------------~l~~L~~L~L~~~~~ 765 (915)
.. ......++..+.+..+|++|++..|....+|..+- .++.|+.|.+.+|..
T Consensus 292 l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~L 371 (1081)
T KOG0618|consen 292 LSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHL 371 (1081)
T ss_pred HHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcc
Confidence 00 00122234455667889999999888766654211 245566677777764
Q ss_pred C-CCCCCCCCCCCcceeeccccccceEeCcccc-CCcccccccccccCC---CcccccCcccceeeecCcccccccccCC
Q 038751 766 C-EIMPPLGKLPSLEILRIWHMRSVKRVGDEFL-GMEISDHIHIHGTSS---SSSVIAFPKLQKLELTGMDELEEWDFGN 840 (915)
Q Consensus 766 ~-~~l~~l~~Lp~L~~L~L~~~~~l~~~~~~~~-~~~~l~~l~l~~~~~---~~~~~~f~~L~~L~l~~~~~l~~~~~~~ 840 (915)
. ..+|.+-++++|+.|+|+++. +..+|.... ....++.|+++||.+ +..+-.++.|++|...+. .+..++
T Consensus 372 td~c~p~l~~~~hLKVLhLsyNr-L~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN-~l~~fP--- 446 (1081)
T KOG0618|consen 372 TDSCFPVLVNFKHLKVLHLSYNR-LNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSN-QLLSFP--- 446 (1081)
T ss_pred cccchhhhccccceeeeeecccc-cccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCC-ceeech---
Confidence 3 367888899999999999876 777776654 567788899999865 345567778888877654 333343
Q ss_pred CCcccCcccceeecccCccccC--CCcCCCCCCCcCeEeEcCCcch
Q 038751 841 DDITIMPHIKSLYITYCEKLKS--LPELLLRSTTLESLTIFGVPIV 884 (915)
Q Consensus 841 ~~~~~lp~L~~L~l~~c~~L~~--lp~~l~~l~~L~~L~l~~c~~l 884 (915)
.+..+|+|+.++++ |..|.. +|..... ++|++|+++|++.+
T Consensus 447 -e~~~l~qL~~lDlS-~N~L~~~~l~~~~p~-p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 447 -ELAQLPQLKVLDLS-CNNLSEVTLPEALPS-PNLKYLDLSGNTRL 489 (1081)
T ss_pred -hhhhcCcceEEecc-cchhhhhhhhhhCCC-cccceeeccCCccc
Confidence 25589999999998 667775 4544332 79999999999853
No 22
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.15 E-value=1.8e-10 Score=119.65 Aligned_cols=195 Identities=22% Similarity=0.209 Sum_probs=100.2
Q ss_pred cccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHH---
Q 038751 173 VRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAI--- 249 (915)
Q Consensus 173 ~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i--- 249 (915)
|+||++|+++|.+.+... ..+.+.|+|+.|+|||+|++.+.+... ...+ .++|+........ .....+
T Consensus 1 F~gR~~el~~l~~~l~~~------~~~~~~l~G~rg~GKTsLl~~~~~~~~-~~~~-~~~y~~~~~~~~~-~~~~~~~~~ 71 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG------PSQHILLYGPRGSGKTSLLKEFINELK-EKGY-KVVYIDFLEESNE-SSLRSFIEE 71 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--------SSEEEEEESTTSSHHHHHHHHHHHCT---EE-CCCHHCCTTBSHH-HHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhh------cCcEEEEEcCCcCCHHHHHHHHHHHhh-hcCC-cEEEEecccchhh-hHHHHHHHH
Confidence 689999999999988643 357899999999999999999988431 1112 3444444343322 222222
Q ss_pred -------HHHhhCCCC----------CcccHHHHHHHHHHHhc--cCeEEEEEeCCCCCC------ccChhhhHHhhhc-
Q 038751 250 -------IEGLEGSLP----------NLRELNSLLEYIHTSIK--EKKFFLILDDVWPDD------YSKWEPFHNCLMN- 303 (915)
Q Consensus 250 -------~~~l~~~~~----------~~~~~~~~~~~l~~~l~--~k~~LlVlDdvw~~~------~~~~~~l~~~l~~- 303 (915)
.+.+....+ ...........+.+.+. +++++||+||+.... ......+...+..
T Consensus 72 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~ 151 (234)
T PF01637_consen 72 TSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSL 151 (234)
T ss_dssp HHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhc
Confidence 111211111 11122223333333332 456999999995432 1111223333433
Q ss_pred -CCCCceEEEEcCchHHHhh--------hcCcCeEeCCCCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCCCc
Q 038751 304 -GLCGSRILVTTRKETVARM--------MESTDVISIKELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKGLP 374 (915)
Q Consensus 304 -~~~gs~iivTtR~~~v~~~--------~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~P 374 (915)
......+|++......... .+....+.+++|+.+++++++....-.. . .. +.-.+..++|+..+||+|
T Consensus 152 ~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~-~~-~~~~~~~~~i~~~~gG~P 228 (234)
T PF01637_consen 152 LSQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-I-KL-PFSDEDIEEIYSLTGGNP 228 (234)
T ss_dssp ---TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC---------HHHHHHHHHHHTT-H
T ss_pred cccCCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-h-cc-cCCHHHHHHHHHHhCCCH
Confidence 1233344444444433322 1224469999999999999999865332 1 11 112344588999999999
Q ss_pred hHHHH
Q 038751 375 LAAKT 379 (915)
Q Consensus 375 Lai~~ 379 (915)
..|..
T Consensus 229 ~~l~~ 233 (234)
T PF01637_consen 229 RYLQE 233 (234)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 98864
No 23
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.14 E-value=4.3e-10 Score=122.39 Aligned_cols=278 Identities=19% Similarity=0.153 Sum_probs=147.5
Q ss_pred cCccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHH
Q 038751 170 VSDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAI 249 (915)
Q Consensus 170 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 249 (915)
-.+|+|++..++.+..++..... .......+.|+|++|+||||||+.+++.. ...+ .++..+ .......+..+
T Consensus 24 ~~~~vG~~~~~~~l~~~l~~~~~-~~~~~~~~ll~GppG~GKT~la~~ia~~l--~~~~---~~~~~~-~~~~~~~l~~~ 96 (328)
T PRK00080 24 LDEFIGQEKVKENLKIFIEAAKK-RGEALDHVLLYGPPGLGKTTLANIIANEM--GVNI---RITSGP-ALEKPGDLAAI 96 (328)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHh-cCCCCCcEEEECCCCccHHHHHHHHHHHh--CCCe---EEEecc-cccChHHHHHH
Confidence 35799999999999888854321 12345678899999999999999999843 2221 122211 11112222233
Q ss_pred HHHhhCCCC-CcccH----HHHHHHHHHHhccCeEEEEEeCCCCCCccChhhhHHhhhcCCCCceEEEEcCchHHHhhhc
Q 038751 250 IEGLEGSLP-NLREL----NSLLEYIHTSIKEKKFFLILDDVWPDDYSKWEPFHNCLMNGLCGSRILVTTRKETVARMME 324 (915)
Q Consensus 250 ~~~l~~~~~-~~~~~----~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~~ 324 (915)
+..+..... -.++. ....+.+...+.+.+..+|+|+..+.. .+ ...+ .+.+-|..|++...+...+.
T Consensus 97 l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~--~~---~~~l---~~~~li~at~~~~~l~~~L~ 168 (328)
T PRK00080 97 LTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAAR--SI---RLDL---PPFTLIGATTRAGLLTSPLR 168 (328)
T ss_pred HHhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCcccc--ce---eecC---CCceEEeecCCcccCCHHHH
Confidence 333221100 00000 011222333334444445555442211 00 0001 12344556666443332221
Q ss_pred --CcCeEeCCCCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCCCchHHHHHHhHhhcCCCHHHHHHHHhhhcc
Q 038751 325 --STDVISIKELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKGLPLAAKTIGSLLRFKKTREEWHIILNSEMW 402 (915)
Q Consensus 325 --~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~PLai~~~~~~l~~~~~~~~w~~~~~~~~~ 402 (915)
....+++++++.++..+++.+.+....-... .+.+..|++.|+|.|-.+..+...+. .|.......
T Consensus 169 sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~----~~~~~~ia~~~~G~pR~a~~~l~~~~------~~a~~~~~~-- 236 (328)
T PRK00080 169 DRFGIVQRLEFYTVEELEKIVKRSARILGVEID----EEGALEIARRSRGTPRIANRLLRRVR------DFAQVKGDG-- 236 (328)
T ss_pred HhcCeeeecCCCCHHHHHHHHHHHHHHcCCCcC----HHHHHHHHHHcCCCchHHHHHHHHHH------HHHHHcCCC--
Confidence 1357899999999999999988754332222 24577899999999976655544332 222211100
Q ss_pred ccc-cccccchHHHHHhhcCCChHhhhHHh-HhccCCCCcccChHHHHHHHHHcCCcccCCCccHHHHHHHHHH-HHHHc
Q 038751 403 QLE-EFERGLLAPLLLSYNDLPSAIKRCFL-YCAVFPKDYNLDKDELVKLWMAQGYIEQKGNIEMEMTGEWYFD-FLATR 479 (915)
Q Consensus 403 ~~~-~~~~~~~~~l~~sy~~L~~~~k~cf~-~~s~fp~~~~i~~~~Li~~W~aeg~i~~~~~~~~e~~~~~~l~-~L~~~ 479 (915)
... ..-......+...+..|++..+..+. ....|+.+ .+..+.+-... | . ..+.++..++ .|++.
T Consensus 237 ~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~~l---g----~----~~~~~~~~~e~~Li~~ 304 (328)
T PRK00080 237 VITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTLAAAL---G----E----ERDTIEDVYEPYLIQQ 304 (328)
T ss_pred CCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHHHHHH---C----C----CcchHHHHhhHHHHHc
Confidence 000 11112334455667788887777775 66777665 46665554332 1 1 1234444556 89999
Q ss_pred ccccccc
Q 038751 480 SFFQEFD 486 (915)
Q Consensus 480 sll~~~~ 486 (915)
+|++...
T Consensus 305 ~li~~~~ 311 (328)
T PRK00080 305 GFIQRTP 311 (328)
T ss_pred CCcccCC
Confidence 9997543
No 24
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.09 E-value=8.1e-10 Score=119.60 Aligned_cols=277 Identities=16% Similarity=0.117 Sum_probs=146.1
Q ss_pred CccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 038751 171 SDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAII 250 (915)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 250 (915)
.+|+|++..++.+..++..... .......+.++|++|+|||+||+.+++.. ...| ..+..+..... ..+...+
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~-~~~~~~~~ll~Gp~G~GKT~la~~ia~~~--~~~~---~~~~~~~~~~~-~~l~~~l 76 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKM-RQEALDHLLLYGPPGLGKTTLAHIIANEM--GVNL---KITSGPALEKP-GDLAAIL 76 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCCHHHHHHHHHHHh--CCCE---EEeccchhcCc-hhHHHHH
Confidence 4699999999999998864322 12345568899999999999999998842 2222 11221111111 1222222
Q ss_pred HHhhCCCC-CcccH----HHHHHHHHHHhccCeEEEEEeCCCCCCccChhhhHHhhhcCCCCceEEEEcCchHHHhhhc-
Q 038751 251 EGLEGSLP-NLREL----NSLLEYIHTSIKEKKFFLILDDVWPDDYSKWEPFHNCLMNGLCGSRILVTTRKETVARMME- 324 (915)
Q Consensus 251 ~~l~~~~~-~~~~~----~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~~- 324 (915)
..+..... -.++. ....+.+...+.+.+..+|+|+.... ..|.. .+ .+.+-|..||+...+...+.
T Consensus 77 ~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~--~~~~~---~~---~~~~li~~t~~~~~l~~~l~s 148 (305)
T TIGR00635 77 TNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSA--RSVRL---DL---PPFTLVGATTRAGMLTSPLRD 148 (305)
T ss_pred HhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccc--cceee---cC---CCeEEEEecCCccccCHHHHh
Confidence 22221100 00000 11223344445555555666654321 11111 11 12445556666543332211
Q ss_pred -CcCeEeCCCCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCCCchHHHHHHhHhhcCCCHHHHHHHHhhhccc
Q 038751 325 -STDVISIKELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKGLPLAAKTIGSLLRFKKTREEWHIILNSEMWQ 403 (915)
Q Consensus 325 -~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~PLai~~~~~~l~~~~~~~~w~~~~~~~~~~ 403 (915)
....+++++++.++..+++.+.+........ .+....|++.|+|.|..+..++..+ |..........
T Consensus 149 R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~----~~al~~ia~~~~G~pR~~~~ll~~~--------~~~a~~~~~~~ 216 (305)
T TIGR00635 149 RFGIILRLEFYTVEELAEIVSRSAGLLNVEIE----PEAALEIARRSRGTPRIANRLLRRV--------RDFAQVRGQKI 216 (305)
T ss_pred hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcC----HHHHHHHHHHhCCCcchHHHHHHHH--------HHHHHHcCCCC
Confidence 1356899999999999999988754322122 2455779999999997765554432 11110000000
Q ss_pred c-ccccccchHHHHHhhcCCChHhhhHHh-HhccCCCCcccChHHHHHHHHHcCCcccCCCccHHHHHHHHHH-HHHHcc
Q 038751 404 L-EEFERGLLAPLLLSYNDLPSAIKRCFL-YCAVFPKDYNLDKDELVKLWMAQGYIEQKGNIEMEMTGEWYFD-FLATRS 480 (915)
Q Consensus 404 ~-~~~~~~~~~~l~~sy~~L~~~~k~cf~-~~s~fp~~~~i~~~~Li~~W~aeg~i~~~~~~~~e~~~~~~l~-~L~~~s 480 (915)
. .+.-......+...|..|+++.+..+. ..+.++.+ .+..+.+-... |- ....++..++ .|++.+
T Consensus 217 it~~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~-~~~~~~ia~~l---g~--------~~~~~~~~~e~~Li~~~ 284 (305)
T TIGR00635 217 INRDIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGG-PVGLKTLAAAL---GE--------DADTIEDVYEPYLLQIG 284 (305)
T ss_pred cCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCC-cccHHHHHHHh---CC--------CcchHHHhhhHHHHHcC
Confidence 0 000011222345567888888777666 55666543 44444433332 11 1234566677 699999
Q ss_pred cccccc
Q 038751 481 FFQEFD 486 (915)
Q Consensus 481 ll~~~~ 486 (915)
|+....
T Consensus 285 li~~~~ 290 (305)
T TIGR00635 285 FLQRTP 290 (305)
T ss_pred CcccCC
Confidence 997443
No 25
>COG3899 Predicted ATPase [General function prediction only]
Probab=99.04 E-value=6.2e-09 Score=125.59 Aligned_cols=313 Identities=15% Similarity=0.143 Sum_probs=186.2
Q ss_pred ccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEE---EEEeCCCC---CHHHH
Q 038751 172 DVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRI---WVCVSDPF---DEFRI 245 (915)
Q Consensus 172 ~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~---wv~vs~~~---~~~~~ 245 (915)
.++||+.|.+.|.+.+..... +...++.|.|.+|||||++++.|..- +.+.+...+ +-....+. .....
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~---g~~~~~lv~G~sGIGKsalv~ev~~~--i~~~~~~~i~~~f~q~~~~ipl~~lvq~ 75 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSK---GRGEVVLVAGESGIGKSALVNEVHKP--ITQQRGYFIKGKFDQFERNIPLSPLVQA 75 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhC---CCeEEEEEeecCCCcHHHHHHHHHHH--HhccceeeeHhhcccccCCCchHHHHHH
Confidence 378999999999999977643 45569999999999999999999873 333221111 11122222 12334
Q ss_pred HHHHHHHhhCCCC--------------------------------C---------cccHHH-----HHHHHHHHh-ccCe
Q 038751 246 AKAIIEGLEGSLP--------------------------------N---------LRELNS-----LLEYIHTSI-KEKK 278 (915)
Q Consensus 246 ~~~i~~~l~~~~~--------------------------------~---------~~~~~~-----~~~~l~~~l-~~k~ 278 (915)
+++++.++..... + ...... ....+.... +.++
T Consensus 76 ~r~l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~p 155 (849)
T COG3899 76 FRDLMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHP 155 (849)
T ss_pred HHHHHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCC
Confidence 4444444411100 0 000000 111222222 4569
Q ss_pred EEEEEeCCCCCCccChhhhHHhhhcCC------CCceEEEEcCch--HHHhhhcCcCeEeCCCCCHHHHHHHHHHhHcCC
Q 038751 279 FFLILDDVWPDDYSKWEPFHNCLMNGL------CGSRILVTTRKE--TVARMMESTDVISIKELSEQECWSLFKRFAFSG 350 (915)
Q Consensus 279 ~LlVlDdvw~~~~~~~~~l~~~l~~~~------~gs~iivTtR~~--~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~ 350 (915)
.++|+||+++.|....+-+........ +..-.+.|.+.. ..-........+.|.||+..+...+........
T Consensus 156 lVi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~ 235 (849)
T COG3899 156 LVIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCT 235 (849)
T ss_pred eEEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCc
Confidence 999999998887777766555444322 011122233322 122222335789999999999999998876432
Q ss_pred CCCCchhHHHHHHHHHHHhcCCCchHHHHHHhHhhcC------CCHHHHHHHHhhhccccccccccchHHHHHhhcCCCh
Q 038751 351 RSPTECEQLEEIGRKIVGKCKGLPLAAKTIGSLLRFK------KTREEWHIILNSEMWQLEEFERGLLAPLLLSYNDLPS 424 (915)
Q Consensus 351 ~~~~~~~~l~~~~~~i~~~c~G~PLai~~~~~~l~~~------~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~ 424 (915)
. ....+..+.|+++..|+|+.+..+-..+... .+...|..-.. .. ......+.+...+..-.+.||.
T Consensus 236 ~-----~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~-~i-~~~~~~~~vv~~l~~rl~kL~~ 308 (849)
T COG3899 236 K-----LLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIA-SL-GILATTDAVVEFLAARLQKLPG 308 (849)
T ss_pred c-----cccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHH-hc-CCchhhHHHHHHHHHHHhcCCH
Confidence 2 2234567889999999999999998888764 22334432111 11 1111112255678889999999
Q ss_pred HhhhHHhHhccCCCCcccChHHHHHHHHHcCCcccCCCccHHHHHHHHHHHHHHcccccccccCC----CCee-EEEech
Q 038751 425 AIKRCFLYCAVFPKDYNLDKDELVKLWMAQGYIEQKGNIEMEMTGEWYFDFLATRSFFQEFDEEK----EGTV-RCKMHD 499 (915)
Q Consensus 425 ~~k~cf~~~s~fp~~~~i~~~~Li~~W~aeg~i~~~~~~~~e~~~~~~l~~L~~~sll~~~~~~~----~~~~-~~~mHd 499 (915)
..|..+...|++. -.|+.+.|...|-. ....++...++.|....++-..+... .... |-..||
T Consensus 309 ~t~~Vl~~AA~iG--~~F~l~~La~l~~~----------~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~ 376 (849)
T COG3899 309 TTREVLKAAACIG--NRFDLDTLAALAED----------SPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHD 376 (849)
T ss_pred HHHHHHHHHHHhC--ccCCHHHHHHHHhh----------chHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHH
Confidence 9999999999995 56677777777632 23455555555555544443221111 1111 336899
Q ss_pred HHHHHHHHH
Q 038751 500 IVHDFAQYL 508 (915)
Q Consensus 500 lv~d~a~~~ 508 (915)
.|++.|-..
T Consensus 377 ~vqqaaY~~ 385 (849)
T COG3899 377 RVQQAAYNL 385 (849)
T ss_pred HHHHHHhcc
Confidence 999888544
No 26
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.03 E-value=9.9e-08 Score=109.47 Aligned_cols=301 Identities=13% Similarity=0.083 Sum_probs=171.3
Q ss_pred cCccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhccccc---ccCCC--eEEEEEeCCCCCHHH
Q 038751 170 VSDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDV---IENFD--KRIWVCVSDPFDEFR 244 (915)
Q Consensus 170 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~~F~--~~~wv~vs~~~~~~~ 244 (915)
+..+.||++|+++|...|...-. +.+...++.|+|++|.|||+.++.|.+.... +...+ .+++|++..-.+...
T Consensus 754 PD~LPhREeEIeeLasfL~paIk-gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~s 832 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIK-QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNA 832 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHh-cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHH
Confidence 45789999999999999976433 2233467889999999999999999874321 11222 356777777778888
Q ss_pred HHHHHHHHhhCCCCC-cccHHHHHHHHHHHh-c--cCeEEEEEeCCCCCCccChhhhHHhhhc-CCCCceEEE--EcCch
Q 038751 245 IAKAIIEGLEGSLPN-LRELNSLLEYIHTSI-K--EKKFFLILDDVWPDDYSKWEPFHNCLMN-GLCGSRILV--TTRKE 317 (915)
Q Consensus 245 ~~~~i~~~l~~~~~~-~~~~~~~~~~l~~~l-~--~k~~LlVlDdvw~~~~~~~~~l~~~l~~-~~~gs~iiv--TtR~~ 317 (915)
++..|.+++.+..+. .....+....+...+ . ....+||||++..-....-+.|...+.. ...+++|+| +|...
T Consensus 833 IYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdl 912 (1164)
T PTZ00112 833 AYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTM 912 (1164)
T ss_pred HHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCch
Confidence 999999988554332 222233444444443 1 2345899999953221111223333332 234555554 33321
Q ss_pred --------HHHhhhcCcCeEeCCCCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCCCchHHHHHHhHhhcCC-
Q 038751 318 --------TVARMMESTDVISIKELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKGLPLAAKTIGSLLRFKK- 388 (915)
Q Consensus 318 --------~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~PLai~~~~~~l~~~~- 388 (915)
.+...++ ...+...|++.++..+++..++......-.+..++-+|+.++...|-.-.|+.++-.+.....
T Consensus 913 DLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgEikeg 991 (1164)
T PTZ00112 913 DLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFENKRG 991 (1164)
T ss_pred hcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhcCC
Confidence 1222222 234778999999999999998864322234556777777777777778888877765553221
Q ss_pred ---CHHHHHHHHhhhccccccccccchHHHHHhhcCCChHhhhHHhHhccCCC---CcccChHHHHHHH--HHc--C-Cc
Q 038751 389 ---TREEWHIILNSEMWQLEEFERGLLAPLLLSYNDLPSAIKRCFLYCAVFPK---DYNLDKDELVKLW--MAQ--G-YI 457 (915)
Q Consensus 389 ---~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~~~s~fp~---~~~i~~~~Li~~W--~ae--g-~i 457 (915)
..++-..+.+.. -...+.-....||.|.|..+..+...-+ ...++...+.... +++ | .+
T Consensus 992 skVT~eHVrkAleei----------E~srI~e~IktLPlHqKLVLlALIlLlk~tg~~~i~TGEVYerYk~Lce~~Gk~i 1061 (1164)
T PTZ00112 992 QKIVPRDITEATNQL----------FDSPLTNAINYLPWPFKMFLTCLIVELRMLNDFIIPYKKVLNRYKVLVETSGKYI 1061 (1164)
T ss_pred CccCHHHHHHHHHHH----------HhhhHHHHHHcCCHHHHHHHHHHHHHHhhcCCCceeHHHHHHHHHHHHHhhhhhc
Confidence 111111111100 0112334556899987776654432211 2235544444432 222 1 11
Q ss_pred ccCCCccHHHHHHHHHHHHHHccccccc
Q 038751 458 EQKGNIEMEMTGEWYFDFLATRSFFQEF 485 (915)
Q Consensus 458 ~~~~~~~~e~~~~~~l~~L~~~sll~~~ 485 (915)
. .... .+ ....|+.+|...|+|...
T Consensus 1062 G-v~pl-Tq-RV~d~L~eL~~LGIIl~e 1086 (1164)
T PTZ00112 1062 G-MCSN-NE-LFKIMLDKLVKMGILLIR 1086 (1164)
T ss_pred C-CCCc-HH-HHHHHHHHHHhcCeEEec
Confidence 1 1111 12 556678888888887654
No 27
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.01 E-value=3.2e-10 Score=133.84 Aligned_cols=119 Identities=15% Similarity=0.174 Sum_probs=65.6
Q ss_pred CcceEEEeeeCCCCCCCcccCccCccEEEEcCcCCCCCCCCCCCCCCcceeeccccccceEeCccccCCccccccccccc
Q 038751 731 DIKSLEIMVFKGRTPSNWIGSLNKLKMLTLNSFVKCEIMPPLGKLPSLEILRIWHMRSVKRVGDEFLGMEISDHIHIHGT 810 (915)
Q Consensus 731 ~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~Lp~L~~L~L~~~~~l~~~~~~~~~~~~l~~l~l~~~ 810 (915)
+|+.|++.+|....+|..+ .++|+.|++++|. +..+|.- -.++|+.|++++|. +..+|..
T Consensus 305 sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N~-Lt~LP~~-l~~sL~~L~Ls~N~-L~~LP~~--------------- 364 (754)
T PRK15370 305 GITHLNVQSNSLTALPETL--PPGLKTLEAGENA-LTSLPAS-LPPELQVLDVSKNQ-ITVLPET--------------- 364 (754)
T ss_pred hHHHHHhcCCccccCCccc--cccceeccccCCc-cccCChh-hcCcccEEECCCCC-CCcCChh---------------
Confidence 4566666666555555433 3566666666663 2233321 12566666666654 4433321
Q ss_pred CCCcccccCcccceeeecCcccccccccCCCCcccCcccceeecccCccccCCCcCCCC----CCCcCeEeEcCCcc
Q 038751 811 SSSSSVIAFPKLQKLELTGMDELEEWDFGNDDITIMPHIKSLYITYCEKLKSLPELLLR----STTLESLTIFGVPI 883 (915)
Q Consensus 811 ~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~lp~L~~L~l~~c~~L~~lp~~l~~----l~~L~~L~l~~c~~ 883 (915)
..++|+.|+++++ .+..++.. -.+.|+.|++++| ++..+|..+.+ ++.+..|++.++|.
T Consensus 365 -------lp~~L~~LdLs~N-~Lt~LP~~-----l~~sL~~LdLs~N-~L~~LP~sl~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 365 -------LPPTITTLDVSRN-ALTNLPEN-----LPAALQIMQASRN-NLVRLPESLPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred -------hcCCcCEEECCCC-cCCCCCHh-----HHHHHHHHhhccC-CcccCchhHHHHhhcCCCccEEEeeCCCc
Confidence 2246777777765 34444311 1236777777776 56677654432 46677788877765
No 28
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.98 E-value=1.5e-09 Score=127.47 Aligned_cols=84 Identities=23% Similarity=0.129 Sum_probs=47.3
Q ss_pred cceEEEEEEccccccCccccCCCCceeEEEeccCCCCceeccccchhccccCCcceeeecCCCCCccccccccCCCcCCC
Q 038751 533 EKLRHLMLVLGFWAKFPFSIFDAKTLHSLILVYSSNNQVAASPVLQGLFDQLTCLRALKIEDLPPTIKIPKGLENLIHLR 612 (915)
Q Consensus 533 ~~~r~Lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~lrv~~~~lp~~i~~L~~Lr~L~l~~~~~~~~lP~~i~~L~~Lr 612 (915)
..++.|++..|.+..+|. ..++|++|.+.+| .+..+|.. ..+|+.|++.+|... .+|... .+|+
T Consensus 222 ~~L~~L~L~~N~Lt~LP~---lp~~Lk~LdLs~N------~LtsLP~l---p~sL~~L~Ls~N~L~-~Lp~lp---~~L~ 285 (788)
T PRK15387 222 AHITTLVIPDNNLTSLPA---LPPELRTLEVSGN------QLTSLPVL---PPGLLELSIFSNPLT-HLPALP---SGLC 285 (788)
T ss_pred cCCCEEEccCCcCCCCCC---CCCCCcEEEecCC------ccCcccCc---ccccceeeccCCchh-hhhhch---hhcC
Confidence 456777777777665553 2466777777766 34555543 346677777776655 555433 2344
Q ss_pred ccc-----CcccCCcCCCCCCCCccCce
Q 038751 613 YLK-----LSMVPNGIERLTSLRTLSEF 635 (915)
Q Consensus 613 ~L~-----l~~lP~~i~~L~~L~~L~~~ 635 (915)
.|+ ++.+|.. +++|+.|++.
T Consensus 286 ~L~Ls~N~Lt~LP~~---p~~L~~LdLS 310 (788)
T PRK15387 286 KLWIFGNQLTSLPVL---PPGLQELSVS 310 (788)
T ss_pred EEECcCCcccccccc---ccccceeECC
Confidence 444 3444432 2456666554
No 29
>PF05729 NACHT: NACHT domain
Probab=98.95 E-value=6.2e-09 Score=101.69 Aligned_cols=142 Identities=18% Similarity=0.303 Sum_probs=87.9
Q ss_pred EEEEEEecCCCcHHHHHHHHhcccccccC----CCeEEEEEeCCCCCHH---HHHHHHHHHhhCCCCCcccHHHHHHHHH
Q 038751 199 QIISLVGMGGIGKTTLAQFAYNDKDVIEN----FDKRIWVCVSDPFDEF---RIAKAIIEGLEGSLPNLRELNSLLEYIH 271 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 271 (915)
+++.|+|.+|+||||+++.++.+...... +...+|++........ .+...|..+..... ..... .+.
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~---~~~~~---~~~ 74 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESI---APIEE---LLQ 74 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccch---hhhHH---HHH
Confidence 57999999999999999998875333222 4456677766544332 33333333332211 11111 122
Q ss_pred HH-hccCeEEEEEeCCCCCCc--c-----ChhhhH-Hhhhc-CCCCceEEEEcCchHH---HhhhcCcCeEeCCCCCHHH
Q 038751 272 TS-IKEKKFFLILDDVWPDDY--S-----KWEPFH-NCLMN-GLCGSRILVTTRKETV---ARMMESTDVISIKELSEQE 338 (915)
Q Consensus 272 ~~-l~~k~~LlVlDdvw~~~~--~-----~~~~l~-~~l~~-~~~gs~iivTtR~~~v---~~~~~~~~~~~l~~L~~~~ 338 (915)
.. -+.++++||+|++.+-.. . .+..+. ..+.. ...+.+++||+|.... .........+++++|++++
T Consensus 75 ~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~ 154 (166)
T PF05729_consen 75 ELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEED 154 (166)
T ss_pred HHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHH
Confidence 22 257899999999854221 1 122323 23333 3578999999998765 3334445689999999999
Q ss_pred HHHHHHHh
Q 038751 339 CWSLFKRF 346 (915)
Q Consensus 339 ~~~lf~~~ 346 (915)
..+++.+.
T Consensus 155 ~~~~~~~~ 162 (166)
T PF05729_consen 155 IKQYLRKY 162 (166)
T ss_pred HHHHHHHH
Confidence 99999765
No 30
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.95 E-value=2.2e-11 Score=110.84 Aligned_cols=82 Identities=21% Similarity=0.350 Sum_probs=68.8
Q ss_pred ccCCCCceeEEEeccCCCCceeccccchhccccCCcceeeecCCCCCccccccccCCCcCCCccc-----CcccCCcCCC
Q 038751 551 SIFDAKTLHSLILVYSSNNQVAASPVLQGLFDQLTCLRALKIEDLPPTIKIPKGLENLIHLRYLK-----LSMVPNGIER 625 (915)
Q Consensus 551 ~~~~~~~Lr~L~l~~~~~~lrv~~~~lp~~i~~L~~Lr~L~l~~~~~~~~lP~~i~~L~~Lr~L~-----l~~lP~~i~~ 625 (915)
.+.++++...|.++.+ .+...|..|..|.+|+.|++.++.+. ++|.+|..|++||+|+ +..+|.|+|.
T Consensus 28 gLf~~s~ITrLtLSHN------Kl~~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~~lprgfgs 100 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHN------KLTVVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLNILPRGFGS 100 (264)
T ss_pred cccchhhhhhhhcccC------ceeecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhhcCccccCC
Confidence 4456677777778777 56678899999999999999988887 9999999999999998 5678999999
Q ss_pred CCCCCccCceeecc
Q 038751 626 LTSLRTLSEFAVAR 639 (915)
Q Consensus 626 L~~L~~L~~~~~~~ 639 (915)
++-|+.|++..++.
T Consensus 101 ~p~levldltynnl 114 (264)
T KOG0617|consen 101 FPALEVLDLTYNNL 114 (264)
T ss_pred Cchhhhhhcccccc
Confidence 99999998765543
No 31
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.93 E-value=1.8e-08 Score=105.39 Aligned_cols=173 Identities=20% Similarity=0.255 Sum_probs=105.9
Q ss_pred cccCccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHH
Q 038751 168 INVSDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAK 247 (915)
Q Consensus 168 ~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 247 (915)
+.+.+++|-...+.++++ .+.+.-...||++|+||||||+.+.. .....|. .++...+-.
T Consensus 27 vGQ~HLlg~~~~lrr~v~---------~~~l~SmIl~GPPG~GKTTlA~liA~--~~~~~f~-----~~sAv~~gv---- 86 (436)
T COG2256 27 VGQEHLLGEGKPLRRAVE---------AGHLHSMILWGPPGTGKTTLARLIAG--TTNAAFE-----ALSAVTSGV---- 86 (436)
T ss_pred cChHhhhCCCchHHHHHh---------cCCCceeEEECCCCCCHHHHHHHHHH--hhCCceE-----EeccccccH----
Confidence 344556666666555554 23567778999999999999999988 3344443 233322222
Q ss_pred HHHHHhhCCCCCcccHHHHHHHHH-HHhccCeEEEEEeCCCCCCccChhhhHHhhhcCCCCceEEE--EcCchH---HHh
Q 038751 248 AIIEGLEGSLPNLRELNSLLEYIH-TSIKEKKFFLILDDVWPDDYSKWEPFHNCLMNGLCGSRILV--TTRKET---VAR 321 (915)
Q Consensus 248 ~i~~~l~~~~~~~~~~~~~~~~l~-~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiv--TtR~~~---v~~ 321 (915)
.++..+.+.-+ ....+++.+|++|.|+.-+..+-+.| ||.-.+|.-|+| ||.++. ...
T Consensus 87 -------------kdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~l---Lp~vE~G~iilIGATTENPsF~ln~A 150 (436)
T COG2256 87 -------------KDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQDAL---LPHVENGTIILIGATTENPSFELNPA 150 (436)
T ss_pred -------------HHHHHHHHHHHHHHhcCCceEEEEehhhhcChhhhhhh---hhhhcCCeEEEEeccCCCCCeeecHH
Confidence 22222222222 22348999999999988777666665 455566887777 555553 122
Q ss_pred hhcCcCeEeCCCCCHHHHHHHHHHhHcCCCCCCc--hhHH-HHHHHHHHHhcCCCchH
Q 038751 322 MMESTDVISIKELSEQECWSLFKRFAFSGRSPTE--CEQL-EEIGRKIVGKCKGLPLA 376 (915)
Q Consensus 322 ~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~--~~~l-~~~~~~i~~~c~G~PLa 376 (915)
......++.+++|+.++..+++.+.+......-. ...+ ++.-.-++..++|--.+
T Consensus 151 LlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~ 208 (436)
T COG2256 151 LLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARR 208 (436)
T ss_pred HhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHH
Confidence 2345779999999999999999884322211111 0111 23445677888876544
No 32
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.83 E-value=8.8e-11 Score=107.00 Aligned_cols=162 Identities=21% Similarity=0.200 Sum_probs=122.0
Q ss_pred ccCCCCCCceEEEEecCCCCchhhhhhhhhHHHHhhHHHHHhhcCCCCCcceEEEeeeCCCCCCCcccCccCccEEEEcC
Q 038751 683 LEKKKNLIDLILIFNEREESDDEKASEEMNEEKEAKHEAVCEALRPPPDIKSLEIMVFKGRTPSNWIGSLNKLKMLTLNS 762 (915)
Q Consensus 683 l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~ 762 (915)
+-++.+++.|.|+.|.. ..++..+..+.+|+.|++++|....+|..+++++.|+.|.+.-
T Consensus 29 Lf~~s~ITrLtLSHNKl--------------------~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgm 88 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKL--------------------TVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGM 88 (264)
T ss_pred ccchhhhhhhhcccCce--------------------eecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecch
Confidence 34456677788887742 2344455667899999999999999999999999999999986
Q ss_pred cCCCCCCCCCCCCCCcceeeccccccc-eEeCccccCCcccccccccccC---CCcccccCcccceeeecCccccccccc
Q 038751 763 FVKCEIMPPLGKLPSLEILRIWHMRSV-KRVGDEFLGMEISDHIHIHGTS---SSSSVIAFPKLQKLELTGMDELEEWDF 838 (915)
Q Consensus 763 ~~~~~~l~~l~~Lp~L~~L~L~~~~~l-~~~~~~~~~~~~l~~l~l~~~~---~~~~~~~f~~L~~L~l~~~~~l~~~~~ 838 (915)
+........+|.+|.|+.|++++++.- .++|..|+.+..++-|+++.|. ++..++.+.+|+.|.+.+.. +-+++.
T Consensus 89 nrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdnd-ll~lpk 167 (264)
T KOG0617|consen 89 NRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDND-LLSLPK 167 (264)
T ss_pred hhhhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCc-hhhCcH
Confidence 644334445999999999999987733 4678888888888888888874 46667788888888887753 334433
Q ss_pred CCCCcccCcccceeecccCccccCCCcCCCC
Q 038751 839 GNDDITIMPHIKSLYITYCEKLKSLPELLLR 869 (915)
Q Consensus 839 ~~~~~~~lp~L~~L~l~~c~~L~~lp~~l~~ 869 (915)
+ ++.+.+|++|.|.++ .|..+|..+.+
T Consensus 168 e---ig~lt~lrelhiqgn-rl~vlppel~~ 194 (264)
T KOG0617|consen 168 E---IGDLTRLRELHIQGN-RLTVLPPELAN 194 (264)
T ss_pred H---HHHHHHHHHHhcccc-eeeecChhhhh
Confidence 2 557888899998877 68888876554
No 33
>PRK06893 DNA replication initiation factor; Validated
Probab=98.77 E-value=7.2e-08 Score=98.92 Aligned_cols=153 Identities=14% Similarity=0.179 Sum_probs=95.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHhccC
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLRELNSLLEYIHTSIKEK 277 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 277 (915)
.+.+.|+|++|+|||+|++.+++.. ......+.|+++... ...... +.+.+. +
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~--~~~~~~~~y~~~~~~---~~~~~~---------------------~~~~~~-~ 91 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHY--LLNQRTAIYIPLSKS---QYFSPA---------------------VLENLE-Q 91 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH--HHcCCCeEEeeHHHh---hhhhHH---------------------HHhhcc-c
Confidence 3578999999999999999999853 222344567766421 000001 111121 2
Q ss_pred eEEEEEeCCCCCC-ccChhh-hHHhhhcC-CCCceEE-EEcCc---------hHHHhhhcCcCeEeCCCCCHHHHHHHHH
Q 038751 278 KFFLILDDVWPDD-YSKWEP-FHNCLMNG-LCGSRIL-VTTRK---------ETVARMMESTDVISIKELSEQECWSLFK 344 (915)
Q Consensus 278 ~~LlVlDdvw~~~-~~~~~~-l~~~l~~~-~~gs~ii-vTtR~---------~~v~~~~~~~~~~~l~~L~~~~~~~lf~ 344 (915)
.-+||+||+|... ...|.. +...+... ..|..+| +|+.. +.+.+.+.....++++++++++.+++++
T Consensus 92 ~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~ 171 (229)
T PRK06893 92 QDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQ 171 (229)
T ss_pred CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHH
Confidence 3489999998632 234553 44434332 2455554 45544 3555556667799999999999999999
Q ss_pred HhHcCCCCCCchhHHHHHHHHHHHhcCCCchHHHHHH
Q 038751 345 RFAFSGRSPTECEQLEEIGRKIVGKCKGLPLAAKTIG 381 (915)
Q Consensus 345 ~~~~~~~~~~~~~~l~~~~~~i~~~c~G~PLai~~~~ 381 (915)
+.++...-.-. +++..-|++++.|..-++..+-
T Consensus 172 ~~a~~~~l~l~----~~v~~~L~~~~~~d~r~l~~~l 204 (229)
T PRK06893 172 RNAYQRGIELS----DEVANFLLKRLDRDMHTLFDAL 204 (229)
T ss_pred HHHHHcCCCCC----HHHHHHHHHhccCCHHHHHHHH
Confidence 98864432111 3556778888988776665443
No 34
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.70 E-value=9.1e-09 Score=121.75 Aligned_cols=88 Identities=19% Similarity=0.289 Sum_probs=60.4
Q ss_pred cceEEEEEEccccccCccccCCCCceeEEEeccCCCCceeccccchhccccCCcceeeecCCCCCccccccccCCCcCCC
Q 038751 533 EKLRHLMLVLGFWAKFPFSIFDAKTLHSLILVYSSNNQVAASPVLQGLFDQLTCLRALKIEDLPPTIKIPKGLENLIHLR 612 (915)
Q Consensus 533 ~~~r~Lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~lrv~~~~lp~~i~~L~~Lr~L~l~~~~~~~~lP~~i~~L~~Lr 612 (915)
..++.|++.+|.+..+|..+. ++|++|.+.+| .+..+|..+. .+|+.|+|++|... .+|..+. .+|+
T Consensus 199 ~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N------~LtsLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~ 265 (754)
T PRK15370 199 EQITTLILDNNELKSLPENLQ--GNIKTLYANSN------QLTSIPATLP--DTIQEMELSINRIT-ELPERLP--SALQ 265 (754)
T ss_pred cCCcEEEecCCCCCcCChhhc--cCCCEEECCCC------ccccCChhhh--ccccEEECcCCccC-cCChhHh--CCCC
Confidence 568888888888877666544 58888888877 4566776554 47888888888776 7787664 4677
Q ss_pred cccC-----cccCCcCCCCCCCCccCce
Q 038751 613 YLKL-----SMVPNGIERLTSLRTLSEF 635 (915)
Q Consensus 613 ~L~l-----~~lP~~i~~L~~L~~L~~~ 635 (915)
+|++ +.+|..+. ++|+.|++.
T Consensus 266 ~L~Ls~N~L~~LP~~l~--~sL~~L~Ls 291 (754)
T PRK15370 266 SLDLFHNKISCLPENLP--EELRYLSVY 291 (754)
T ss_pred EEECcCCccCccccccC--CCCcEEECC
Confidence 7774 34554443 356666554
No 35
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.69 E-value=2.5e-07 Score=103.87 Aligned_cols=178 Identities=19% Similarity=0.223 Sum_probs=104.5
Q ss_pred CccccchHHHHH---HHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHH
Q 038751 171 SDVRGRDEEKNI---LKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAK 247 (915)
Q Consensus 171 ~~~~Gr~~~~~~---l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 247 (915)
.+++|++..+.. +..++... ....+.++|++|+||||+|+.+++. .... |+.++....-.+-.+
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~------~~~~ilL~GppGtGKTtLA~~ia~~--~~~~-----~~~l~a~~~~~~~ir 78 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAG------RLSSMILWGPPGTGKTTLARIIAGA--TDAP-----FEALSAVTSGVKDLR 78 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcC------CCceEEEECCCCCCHHHHHHHHHHH--hCCC-----EEEEecccccHHHHH
Confidence 357888776555 66666432 4556888999999999999999884 2222 233322211111122
Q ss_pred HHHHHhhCCCCCcccHHHHHHHHHHH-hccCeEEEEEeCCCCCCccChhhhHHhhhcCCCCceEEE--EcCchHHH---h
Q 038751 248 AIIEGLEGSLPNLRELNSLLEYIHTS-IKEKKFFLILDDVWPDDYSKWEPFHNCLMNGLCGSRILV--TTRKETVA---R 321 (915)
Q Consensus 248 ~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiv--TtR~~~v~---~ 321 (915)
.++ +..... ..+++.+|++|++|.......+.+...+.. |..+++ ||.++... .
T Consensus 79 ~ii-----------------~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~---~~iilI~att~n~~~~l~~a 138 (413)
T PRK13342 79 EVI-----------------EEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVED---GTITLIGATTENPSFEVNPA 138 (413)
T ss_pred HHH-----------------HHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhc---CcEEEEEeCCCChhhhccHH
Confidence 222 222111 145788999999987655555666555543 455554 34433211 1
Q ss_pred hhcCcCeEeCCCCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCCCchHHHHHHh
Q 038751 322 MMESTDVISIKELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKGLPLAAKTIGS 382 (915)
Q Consensus 322 ~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~PLai~~~~~ 382 (915)
.......+++.+++.++.+.++.+.+....... ..--.+..+.|++.|+|.+..+..+..
T Consensus 139 L~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~-i~i~~~al~~l~~~s~Gd~R~aln~Le 198 (413)
T PRK13342 139 LLSRAQVFELKPLSEEDIEQLLKRALEDKERGL-VELDDEALDALARLANGDARRALNLLE 198 (413)
T ss_pred HhccceeeEeCCCCHHHHHHHHHHHHHHhhcCC-CCCCHHHHHHHHHhCCCCHHHHHHHHH
Confidence 223346899999999999999988653211100 011134567788999999987654433
No 36
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.63 E-value=1.8e-06 Score=99.05 Aligned_cols=198 Identities=15% Similarity=0.183 Sum_probs=116.7
Q ss_pred CccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 038751 171 SDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAII 250 (915)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 250 (915)
.+++|.+..++.|.+++.... -.+.+.++|..|+||||+|+.+.+...-...++ +..+..-...+.|.
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gR-----L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~-------~~PCG~C~sCr~I~ 83 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGR-----LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVT-------SQPCGVCRACREID 83 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCC-------CCCCcccHHHHHHh
Confidence 468999999999999885431 245677999999999999988776321111110 00111111111111
Q ss_pred HH-----hhCCCCCcccHHHHHHHHHHH----hccCeEEEEEeCCCCCCccChhhhHHhhhcCCCCceEEEEcCchH-HH
Q 038751 251 EG-----LEGSLPNLRELNSLLEYIHTS----IKEKKFFLILDDVWPDDYSKWEPFHNCLMNGLCGSRILVTTRKET-VA 320 (915)
Q Consensus 251 ~~-----l~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~-v~ 320 (915)
.. +..+.......+++.+.+... ..++.-++|||+++.-+...++.++..+.......++|+||.+.. +.
T Consensus 84 ~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp 163 (830)
T PRK07003 84 EGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIP 163 (830)
T ss_pred cCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhcc
Confidence 10 000000011122222222221 124556889999977666678888888877777888888887643 32
Q ss_pred hh-hcCcCeEeCCCCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCCCch-HHHHHHhHh
Q 038751 321 RM-MESTDVISIKELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKGLPL-AAKTIGSLL 384 (915)
Q Consensus 321 ~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~PL-ai~~~~~~l 384 (915)
.. ......+++.+++.++..+.+.+.+...+-..+ .+..+.|++.++|... |+..+-..+
T Consensus 164 ~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~id----~eAL~lIA~~A~GsmRdALsLLdQAi 225 (830)
T PRK07003 164 VTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAFE----PQALRLLARAAQGSMRDALSLTDQAI 225 (830)
T ss_pred chhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 22 233568999999999999999887643322222 2445678888988654 555544333
No 37
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.60 E-value=7.9e-07 Score=91.72 Aligned_cols=171 Identities=16% Similarity=0.125 Sum_probs=100.1
Q ss_pred chHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhhC
Q 038751 176 RDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEG 255 (915)
Q Consensus 176 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 255 (915)
.+..++.+.+++... ..+.|.|+|++|+|||+||+.+++.. .......++++++.-.+ ..
T Consensus 22 ~~~~~~~l~~~~~~~------~~~~lll~G~~G~GKT~la~~~~~~~--~~~~~~~~~i~~~~~~~------~~------ 81 (226)
T TIGR03420 22 NAELLAALRQLAAGK------GDRFLYLWGESGSGKSHLLQAACAAA--EERGKSAIYLPLAELAQ------AD------ 81 (226)
T ss_pred cHHHHHHHHHHHhcC------CCCeEEEECCCCCCHHHHHHHHHHHH--HhcCCcEEEEeHHHHHH------hH------
Confidence 344566666665322 34678999999999999999998742 22333455665543211 00
Q ss_pred CCCCcccHHHHHHHHHHHhccCeEEEEEeCCCCCCcc-C-hhhhHHhhhc-CCCCceEEEEcCchH---------HHhhh
Q 038751 256 SLPNLRELNSLLEYIHTSIKEKKFFLILDDVWPDDYS-K-WEPFHNCLMN-GLCGSRILVTTRKET---------VARMM 323 (915)
Q Consensus 256 ~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~-~-~~~l~~~l~~-~~~gs~iivTtR~~~---------v~~~~ 323 (915)
.. +...+.+ .-+||+||++.-... . .+.+...+.. ...+..+|+||+... +...+
T Consensus 82 --------~~----~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~ 148 (226)
T TIGR03420 82 --------PE----VLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRL 148 (226)
T ss_pred --------HH----HHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHH
Confidence 00 1111222 238999999653322 2 2335444433 123457888888532 12222
Q ss_pred cCcCeEeCCCCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCCCchHHHHHHhH
Q 038751 324 ESTDVISIKELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKGLPLAAKTIGSL 383 (915)
Q Consensus 324 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~PLai~~~~~~ 383 (915)
.....+++.++++++...++...+-...-.-. .+..+.|++.+.|.|..+..+...
T Consensus 149 ~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~----~~~l~~L~~~~~gn~r~L~~~l~~ 204 (226)
T TIGR03420 149 AWGLVFQLPPLSDEEKIAALQSRAARRGLQLP----DEVADYLLRHGSRDMGSLMALLDA 204 (226)
T ss_pred hcCeeEecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHhccCCHHHHHHHHHH
Confidence 22468999999999999999875432221112 244566777899999887666433
No 38
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.59 E-value=9.4e-08 Score=89.16 Aligned_cols=118 Identities=18% Similarity=0.216 Sum_probs=78.6
Q ss_pred ceEEEEEEecCCCcHHHHHHHHhcccccc---cCCCeEEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHH
Q 038751 197 AVQIISLVGMGGIGKTTLAQFAYNDKDVI---ENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLRELNSLLEYIHTS 273 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 273 (915)
+.+++.|+|.+|+|||++++.+.++.... ..-..++|+.+....+...+.+.|+.+++.......+..++.+.+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 45789999999999999999998842110 002456799998888999999999999987665555667777888888
Q ss_pred hccCe-EEEEEeCCCCC-CccChhhhHHhhhcCCCCceEEEEcCc
Q 038751 274 IKEKK-FFLILDDVWPD-DYSKWEPFHNCLMNGLCGSRILVTTRK 316 (915)
Q Consensus 274 l~~k~-~LlVlDdvw~~-~~~~~~~l~~~l~~~~~gs~iivTtR~ 316 (915)
+...+ .+||+||+..- +...++.+..... ..+.++|+..+.
T Consensus 83 l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 86554 59999999543 3233333333222 556677776654
No 39
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.58 E-value=1.4e-06 Score=94.34 Aligned_cols=180 Identities=16% Similarity=0.163 Sum_probs=117.8
Q ss_pred CccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcc----cccccCCCeEEEEEe-CCCCCHHHH
Q 038751 171 SDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYND----KDVIENFDKRIWVCV-SDPFDEFRI 245 (915)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~----~~~~~~F~~~~wv~v-s~~~~~~~~ 245 (915)
.+++|.+..++.+..++... .-.+...++|+.|+||||+|+.++.. .....|.|...|... +......+
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~-----~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~- 77 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKN-----RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD- 77 (313)
T ss_pred hhccCcHHHHHHHHHHHHcC-----CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-
Confidence 46789888889999988543 23567889999999999999888763 122356676666542 22222222
Q ss_pred HHHHHHHhhCCCCCcccHHHHHHHHHHHhccCeEEEEEeCCCCCCccChhhhHHhhhcCCCCceEEEEcCchHHH-h-hh
Q 038751 246 AKAIIEGLEGSLPNLRELNSLLEYIHTSIKEKKFFLILDDVWPDDYSKWEPFHNCLMNGLCGSRILVTTRKETVA-R-MM 323 (915)
Q Consensus 246 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~-~-~~ 323 (915)
.+++.+.+... -..+++-++|+|++...+.+.++.+...+.....++.+|++|.+.... . ..
T Consensus 78 ir~~~~~~~~~----------------p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~ 141 (313)
T PRK05564 78 IRNIIEEVNKK----------------PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIK 141 (313)
T ss_pred HHHHHHHHhcC----------------cccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHH
Confidence 22222222111 112455577778776556678899999999888899999988765421 1 12
Q ss_pred cCcCeEeCCCCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCCCchHHHHH
Q 038751 324 ESTDVISIKELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKGLPLAAKTI 380 (915)
Q Consensus 324 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~PLai~~~ 380 (915)
.....+++.++++++....+.+...+ .. .+.++.++..++|.|.-+...
T Consensus 142 SRc~~~~~~~~~~~~~~~~l~~~~~~----~~----~~~~~~l~~~~~g~~~~a~~~ 190 (313)
T PRK05564 142 SRCQIYKLNRLSKEEIEKFISYKYND----IK----EEEKKSAIAFSDGIPGKVEKF 190 (313)
T ss_pred hhceeeeCCCcCHHHHHHHHHHHhcC----CC----HHHHHHHHHHcCCCHHHHHHH
Confidence 23568999999999998888665311 11 123567888999998765443
No 40
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.55 E-value=3.3e-06 Score=93.02 Aligned_cols=192 Identities=18% Similarity=0.218 Sum_probs=110.5
Q ss_pred CccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 038751 171 SDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAII 250 (915)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 250 (915)
.+++|.+..++.+...+... .-.+.+.++|+.|+||||+|+.+.+......... ..++..-...+++.
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~-----~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~-------~~pc~~c~~c~~~~ 83 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLG-----RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGIT-------SNPCRKCIICKEIE 83 (363)
T ss_pred hhccChHHHHHHHHHHHHcC-----CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCCCHHHHHHh
Confidence 46899999999988888543 1346788999999999999999877421111000 00000001111111
Q ss_pred HHhhC-----CCCCcccHHHHHHHHHHHh-----ccCeEEEEEeCCCCCCccChhhhHHhhhcCCCCceEEEEcCch-HH
Q 038751 251 EGLEG-----SLPNLRELNSLLEYIHTSI-----KEKKFFLILDDVWPDDYSKWEPFHNCLMNGLCGSRILVTTRKE-TV 319 (915)
Q Consensus 251 ~~l~~-----~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~v 319 (915)
..... ........++..+ +.+.+ .+++-++|+|++..-....++.+...+.......++|++|.+. .+
T Consensus 84 ~~~~~d~~~~~~~~~~~v~~ir~-i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l 162 (363)
T PRK14961 84 KGLCLDLIEIDAASRTKVEEMRE-ILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKI 162 (363)
T ss_pred cCCCCceEEecccccCCHHHHHH-HHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhh
Confidence 10000 0000011122111 11111 2445699999997655556777877777766677777777543 33
Q ss_pred Hhh-hcCcCeEeCCCCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCCCchHHHH
Q 038751 320 ARM-MESTDVISIKELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKGLPLAAKT 379 (915)
Q Consensus 320 ~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~PLai~~ 379 (915)
... .+....+++.+++.++..+.+...+...+.... .+.++.|++.++|.|..+..
T Consensus 163 ~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i~----~~al~~ia~~s~G~~R~al~ 219 (363)
T PRK14961 163 PKTILSRCLQFKLKIISEEKIFNFLKYILIKESIDTD----EYALKLIAYHAHGSMRDALN 219 (363)
T ss_pred hHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHH
Confidence 322 223568999999999999988876543221121 24456788889998865433
No 41
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=7.4e-06 Score=89.18 Aligned_cols=210 Identities=15% Similarity=0.157 Sum_probs=135.8
Q ss_pred cCccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCC--eEEEEEeCCCCCHHHHHH
Q 038751 170 VSDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFD--KRIWVCVSDPFDEFRIAK 247 (915)
Q Consensus 170 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~vs~~~~~~~~~~ 247 (915)
+..+.+|+.+++++...|...-.+ ....-+.|+|..|+|||+.++.|.+. ++.... .+++|++-...+..+++.
T Consensus 16 P~~l~~Re~ei~~l~~~l~~~~~~--~~p~n~~iyG~~GTGKT~~~~~v~~~--l~~~~~~~~~~yINc~~~~t~~~i~~ 91 (366)
T COG1474 16 PEELPHREEEINQLASFLAPALRG--ERPSNIIIYGPTGTGKTATVKFVMEE--LEESSANVEVVYINCLELRTPYQVLS 91 (366)
T ss_pred cccccccHHHHHHHHHHHHHHhcC--CCCccEEEECCCCCCHhHHHHHHHHH--HHhhhccCceEEEeeeeCCCHHHHHH
Confidence 334999999999999998765432 22334899999999999999999984 333321 278999999999999999
Q ss_pred HHHHHhhCCCCCcccHHHHHHHHHHHh--ccCeEEEEEeCCCCCCccChhhhHHhhhcCCC-CceEE--EEcCchHHHhh
Q 038751 248 AIIEGLEGSLPNLRELNSLLEYIHTSI--KEKKFFLILDDVWPDDYSKWEPFHNCLMNGLC-GSRIL--VTTRKETVARM 322 (915)
Q Consensus 248 ~i~~~l~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~-gs~ii--vTtR~~~v~~~ 322 (915)
.|+++++..........+..+.+.+.+ .++.+++|||++..-....-+.+...+..... .++|+ ..+-+......
T Consensus 92 ~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ 171 (366)
T COG1474 92 KILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDY 171 (366)
T ss_pred HHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHH
Confidence 999999754443445566667777766 36889999999954211111344444443322 34433 33333333222
Q ss_pred hcC-------cCeEeCCCCCHHHHHHHHHHhHcCCCC--CCchhHHHHHHHHHHHhcCCCchHHHHHHhH
Q 038751 323 MES-------TDVISIKELSEQECWSLFKRFAFSGRS--PTECEQLEEIGRKIVGKCKGLPLAAKTIGSL 383 (915)
Q Consensus 323 ~~~-------~~~~~l~~L~~~~~~~lf~~~~~~~~~--~~~~~~l~~~~~~i~~~c~G~PLai~~~~~~ 383 (915)
+.. ...+...|-+.+|-..++..++-..-. ...+..++-+|...++..|-.-.|+..+-.+
T Consensus 172 ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A 241 (366)
T COG1474 172 LDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRA 241 (366)
T ss_pred hhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHH
Confidence 211 234889999999999999988643221 1223445555555556666666666655333
No 42
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.53 E-value=2.2e-06 Score=100.43 Aligned_cols=194 Identities=15% Similarity=0.205 Sum_probs=114.9
Q ss_pred CccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 038751 171 SDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAII 250 (915)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 250 (915)
.+++|.+..++.|.+++... .-.+.+.++|+.|+||||+|+.+++...-...... ..+..-.....|.
T Consensus 16 ddIIGQe~Iv~~LknaI~~~-----rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~-------~pCg~C~sC~~i~ 83 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQ-----RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTA-------TPCGVCSSCVEIA 83 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhC-----CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCC-------CCCCCchHHHHHh
Confidence 46899999999998888543 12456689999999999999999874211111000 0000000011111
Q ss_pred HH-------hhCC-CCCcccHHHHHHHHHH-HhccCeEEEEEeCCCCCCccChhhhHHhhhcCCCCceEEEEcCc-hHHH
Q 038751 251 EG-------LEGS-LPNLRELNSLLEYIHT-SIKEKKFFLILDDVWPDDYSKWEPFHNCLMNGLCGSRILVTTRK-ETVA 320 (915)
Q Consensus 251 ~~-------l~~~-~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~-~~v~ 320 (915)
.. +... .....+..++.+.+.. -..+++-++|+|+++......++.|+..+.......++|++|.+ ..+.
T Consensus 84 ~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl 163 (944)
T PRK14949 84 QGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (944)
T ss_pred cCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhch
Confidence 00 0000 0111112222222221 12467779999999877777788888888776667777776654 3333
Q ss_pred hh-hcCcCeEeCCCCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCCCchHHHHH
Q 038751 321 RM-MESTDVISIKELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKGLPLAAKTI 380 (915)
Q Consensus 321 ~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~PLai~~~ 380 (915)
.. ......+++.+++.++..+++.+.+-...-... .+..+.|++.++|.|.-+..+
T Consensus 164 ~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI~~e----deAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 164 VTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLPFE----AEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred HHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 22 233578999999999999999886543221111 244667889999988655444
No 43
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.53 E-value=1.2e-06 Score=86.09 Aligned_cols=182 Identities=21% Similarity=0.241 Sum_probs=99.0
Q ss_pred CccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 038751 171 SDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAII 250 (915)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 250 (915)
.+|+|.+.-++.+.-++..... ..+...-+..||++|+||||||+-+.+. ....|. +++... ..
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~-r~~~l~h~lf~GPPG~GKTTLA~IIA~e--~~~~~~---~~sg~~-i~--------- 87 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKK-RGEALDHMLFYGPPGLGKTTLARIIANE--LGVNFK---ITSGPA-IE--------- 87 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHC-TTS---EEEEESSTTSSHHHHHHHHHHH--CT--EE---EEECCC------------
T ss_pred HHccCcHHHHhhhHHHHHHHHh-cCCCcceEEEECCCccchhHHHHHHHhc--cCCCeE---eccchh-hh---------
Confidence 5799998887776555543211 2345778899999999999999999984 444442 222211 00
Q ss_pred HHhhCCCCCcccHHHHHHHHHHHhccCeEEEEEeCCCCCCccChhhhHHhhhcCC--------CC-----------ceEE
Q 038751 251 EGLEGSLPNLRELNSLLEYIHTSIKEKKFFLILDDVWPDDYSKWEPFHNCLMNGL--------CG-----------SRIL 311 (915)
Q Consensus 251 ~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~--------~g-----------s~ii 311 (915)
...++...+.. + +++-+|++|+++.-+..+-+.+..++.++. .+ +-|=
T Consensus 88 -----------k~~dl~~il~~-l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTlig 154 (233)
T PF05496_consen 88 -----------KAGDLAAILTN-L-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIG 154 (233)
T ss_dssp -----------SCHHHHHHHHT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEE
T ss_pred -----------hHHHHHHHHHh-c-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEee
Confidence 01112222211 2 234577889998766555555655554321 11 1223
Q ss_pred EEcCchHHHhhhcC--cCeEeCCCCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCCCchHHHHHHhHhh
Q 038751 312 VTTRKETVARMMES--TDVISIKELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKGLPLAAKTIGSLLR 385 (915)
Q Consensus 312 vTtR~~~v~~~~~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~PLai~~~~~~l~ 385 (915)
-|||...+...+.. .-+.+++..+.+|-.++..+.+..-.-. --++.+.+|+++|.|-|--+.-+-+..+
T Consensus 155 ATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~----i~~~~~~~Ia~rsrGtPRiAnrll~rvr 226 (233)
T PF05496_consen 155 ATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIE----IDEDAAEEIARRSRGTPRIANRLLRRVR 226 (233)
T ss_dssp EESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-E----E-HHHHHHHHHCTTTSHHHHHHHHHHHC
T ss_pred eeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCC----cCHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 37776554444333 2345899999999999998876443321 2246688899999999987766555443
No 44
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.51 E-value=5.9e-07 Score=92.07 Aligned_cols=158 Identities=20% Similarity=0.239 Sum_probs=101.6
Q ss_pred ceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHhcc
Q 038751 197 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLRELNSLLEYIHTSIKE 276 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 276 (915)
...-+.+||++|+||||||+.+..... .+ ...||..|....-..-++.|+++-.. ...+..
T Consensus 161 ~ipSmIlWGppG~GKTtlArlia~tsk--~~--SyrfvelSAt~a~t~dvR~ife~aq~---------------~~~l~k 221 (554)
T KOG2028|consen 161 RIPSMILWGPPGTGKTTLARLIASTSK--KH--SYRFVELSATNAKTNDVRDIFEQAQN---------------EKSLTK 221 (554)
T ss_pred CCCceEEecCCCCchHHHHHHHHhhcC--CC--ceEEEEEeccccchHHHHHHHHHHHH---------------HHhhhc
Confidence 677788999999999999999988533 22 25677776644444444455444211 123457
Q ss_pred CeEEEEEeCCCCCCccChhhhHHhhhcCCCCceEEE--EcCchHH---HhhhcCcCeEeCCCCCHHHHHHHHHHhHc--C
Q 038751 277 KKFFLILDDVWPDDYSKWEPFHNCLMNGLCGSRILV--TTRKETV---ARMMESTDVISIKELSEQECWSLFKRFAF--S 349 (915)
Q Consensus 277 k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiv--TtR~~~v---~~~~~~~~~~~l~~L~~~~~~~lf~~~~~--~ 349 (915)
+|.+|++|.|+..+..+-+.| ||.-.+|+.++| ||.++.. +..+....++.|++|+.++...++.+... +
T Consensus 222 rkTilFiDEiHRFNksQQD~f---LP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~raia~l~ 298 (554)
T KOG2028|consen 222 RKTILFIDEIHRFNKSQQDTF---LPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIASLG 298 (554)
T ss_pred ceeEEEeHHhhhhhhhhhhcc---cceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHHHhhc
Confidence 899999999987766666554 566677887777 6666542 22345577999999999999999887432 1
Q ss_pred C-CC---CCchh---HHHHHHHHHHHhcCCCchH
Q 038751 350 G-RS---PTECE---QLEEIGRKIVGKCKGLPLA 376 (915)
Q Consensus 350 ~-~~---~~~~~---~l~~~~~~i~~~c~G~PLa 376 (915)
+ .. +-.++ --..+.+-++..|.|-..+
T Consensus 299 dser~~~~l~n~s~~ve~siidyla~lsdGDaR~ 332 (554)
T KOG2028|consen 299 DSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARA 332 (554)
T ss_pred cccccCCCCCCcchhhhHHHHHHHHHhcCchHHH
Confidence 1 11 11111 2234556667777776543
No 45
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.51 E-value=2.7e-06 Score=96.68 Aligned_cols=194 Identities=14% Similarity=0.140 Sum_probs=115.3
Q ss_pred CccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 038751 171 SDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAII 250 (915)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 250 (915)
.+++|.+...+.|..++.... -.+.+.++|+.|+||||+|+.+.+...-.. |+.. ..++.-...+.|.
T Consensus 15 ddVIGQe~vv~~L~~aI~~gr-----l~HAyLF~GPpGvGKTTlAriLAK~LnC~~------~~~~-~pCg~C~sC~~I~ 82 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGR-----LHHAYLFTGTRGVGKTTIARILAKCLNCET------GVTS-TPCEVCATCKAVN 82 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCc------CCCC-CCCccCHHHHHHh
Confidence 468999999999999986432 247889999999999999998876321110 1110 0111111111111
Q ss_pred HHhhC-----CCCCcccHHHHHHHHHH----HhccCeEEEEEeCCCCCCccChhhhHHhhhcCCCCceEEEEcCch-HHH
Q 038751 251 EGLEG-----SLPNLRELNSLLEYIHT----SIKEKKFFLILDDVWPDDYSKWEPFHNCLMNGLCGSRILVTTRKE-TVA 320 (915)
Q Consensus 251 ~~l~~-----~~~~~~~~~~~~~~l~~----~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~v~ 320 (915)
..-.. ........+++.+.+.. -..++.-++|+|+++.-+....+.+...+.....+.++|++|.+. .+.
T Consensus 83 ~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp 162 (702)
T PRK14960 83 EGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLP 162 (702)
T ss_pred cCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhh
Confidence 10000 00001122222222221 123566789999997766667777888777766677888877653 222
Q ss_pred -hhhcCcCeEeCCCCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCCCchHHHHH
Q 038751 321 -RMMESTDVISIKELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKGLPLAAKTI 380 (915)
Q Consensus 321 -~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~PLai~~~ 380 (915)
........+++.+++.++....+.+.+...+..... +....|++.++|.+..+..+
T Consensus 163 ~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~id~----eAL~~IA~~S~GdLRdALnL 219 (702)
T PRK14960 163 ITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAADQ----DAIWQIAESAQGSLRDALSL 219 (702)
T ss_pred HHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHcCCCHHHHHHH
Confidence 122345789999999999999988776443322222 34566888899977555433
No 46
>PRK04195 replication factor C large subunit; Provisional
Probab=98.49 E-value=1.3e-05 Score=91.88 Aligned_cols=247 Identities=17% Similarity=0.155 Sum_probs=137.8
Q ss_pred CccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 038751 171 SDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAII 250 (915)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 250 (915)
.+++|.+..++.+.+|+..... ....+.+.|+|++|+||||+|+.++++. .|+. +-++.+...+. .....++
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~--g~~~~~lLL~GppG~GKTtla~ala~el----~~~~-ielnasd~r~~-~~i~~~i 85 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLK--GKPKKALLLYGPPGVGKTSLAHALANDY----GWEV-IELNASDQRTA-DVIERVA 85 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhc--CCCCCeEEEECCCCCCHHHHHHHHHHHc----CCCE-EEEcccccccH-HHHHHHH
Confidence 4699999999999999965432 1226789999999999999999999843 2332 23344432222 2223332
Q ss_pred HHhhCCCCCcccHHHHHHHHHHHhccCeEEEEEeCCCCCCc----cChhhhHHhhhcCCCCceEEEEcCch-HHHh-h-h
Q 038751 251 EGLEGSLPNLRELNSLLEYIHTSIKEKKFFLILDDVWPDDY----SKWEPFHNCLMNGLCGSRILVTTRKE-TVAR-M-M 323 (915)
Q Consensus 251 ~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~----~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~-~-~ 323 (915)
....... .....++-+||+|+++.-.. ..+..+...+.. .+..||+|+.+. .... . -
T Consensus 86 ~~~~~~~--------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~~~~~~~k~Lr 149 (482)
T PRK04195 86 GEAATSG--------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTANDPYDPSLRELR 149 (482)
T ss_pred HHhhccC--------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccCccccchhhHh
Confidence 2221110 00113677999999965321 235555555543 233466666432 1111 1 1
Q ss_pred cCcCeEeCCCCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCCCchHHHHHHhHhhcCC---CHHHHHHHHhhh
Q 038751 324 ESTDVISIKELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKGLPLAAKTIGSLLRFKK---TREEWHIILNSE 400 (915)
Q Consensus 324 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~PLai~~~~~~l~~~~---~~~~w~~~~~~~ 400 (915)
.....+++.+++.++....+.+.+...+-... .++...|++.++|-...+......+.... +.+.-..+..
T Consensus 150 sr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~----~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~~~-- 223 (482)
T PRK04195 150 NACLMIEFKRLSTRSIVPVLKRICRKEGIECD----DEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTLGR-- 223 (482)
T ss_pred ccceEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHhhc--
Confidence 23568999999999999988877644332222 24567788889987766544333333221 2233222221
Q ss_pred ccccccccccchHHHHHhhc-CCChHhhhHHhHhccCCCCcccChHHHHHHHHHcCCccc
Q 038751 401 MWQLEEFERGLLAPLLLSYN-DLPSAIKRCFLYCAVFPKDYNLDKDELVKLWMAQGYIEQ 459 (915)
Q Consensus 401 ~~~~~~~~~~~~~~l~~sy~-~L~~~~k~cf~~~s~fp~~~~i~~~~Li~~W~aeg~i~~ 459 (915)
.+....++.++..-+. .-+......+..+ .++. ..+-.|+.|.+...
T Consensus 224 ----~d~~~~if~~l~~i~~~k~~~~a~~~~~~~-------~~~~-~~i~~~l~en~~~~ 271 (482)
T PRK04195 224 ----RDREESIFDALDAVFKARNADQALEASYDV-------DEDP-DDLIEWIDENIPKE 271 (482)
T ss_pred ----CCCCCCHHHHHHHHHCCCCHHHHHHHHHcc-------cCCH-HHHHHHHHhccccc
Confidence 1223346666665554 2222332222211 1222 45778999999764
No 47
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.48 E-value=9.3e-09 Score=112.44 Aligned_cols=167 Identities=17% Similarity=0.178 Sum_probs=98.1
Q ss_pred CCCCceEEEEecCCCCchhhhhhhhhHHHHhhHHHHHhhcCCC-CCcceEEEeeeCCCC-----CCCcccCccCccEEEE
Q 038751 687 KNLIDLILIFNEREESDDEKASEEMNEEKEAKHEAVCEALRPP-PDIKSLEIMVFKGRT-----PSNWIGSLNKLKMLTL 760 (915)
Q Consensus 687 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~-----~p~~~~~l~~L~~L~L 760 (915)
++|+.|++++|.... . ........+... ++|+.|++.+|.... ++.++..+++|++|++
T Consensus 108 ~~L~~L~ls~~~~~~--------~-------~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l 172 (319)
T cd00116 108 SSLQELKLNNNGLGD--------R-------GLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNL 172 (319)
T ss_pred CcccEEEeeCCccch--------H-------HHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEEC
Confidence 568888888775321 0 122233344445 788888888887652 2334446678888888
Q ss_pred cCcCCCC-CCC----CCCCCCCcceeeccccccceEeCccccCCcccccccccccCCCcccccCcccceeeecCcccccc
Q 038751 761 NSFVKCE-IMP----PLGKLPSLEILRIWHMRSVKRVGDEFLGMEISDHIHIHGTSSSSSVIAFPKLQKLELTGMDELEE 835 (915)
Q Consensus 761 ~~~~~~~-~l~----~l~~Lp~L~~L~L~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~f~~L~~L~l~~~~~l~~ 835 (915)
++|...+ .++ .+..+++|++|++++|. +...+.... ...+..+++|+.|++++++ +..
T Consensus 173 ~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l---------------~~~~~~~~~L~~L~ls~n~-l~~ 235 (319)
T cd00116 173 ANNGIGDAGIRALAEGLKANCNLEVLDLNNNG-LTDEGASAL---------------AETLASLKSLEVLNLGDNN-LTD 235 (319)
T ss_pred cCCCCchHHHHHHHHHHHhCCCCCEEeccCCc-cChHHHHHH---------------HHHhcccCCCCEEecCCCc-Cch
Confidence 8875331 111 23456788899888875 322111100 0113467889999998864 333
Q ss_pred cccCC--CC-cccCcccceeecccCcccc-----CCCcCCCCCCCcCeEeEcCCcchhH
Q 038751 836 WDFGN--DD-ITIMPHIKSLYITYCEKLK-----SLPELLLRSTTLESLTIFGVPIVQE 886 (915)
Q Consensus 836 ~~~~~--~~-~~~lp~L~~L~l~~c~~L~-----~lp~~l~~l~~L~~L~l~~c~~l~~ 886 (915)
+.... .. ....+.|++|++.+|. +. .++..+..+++|+++++++|+--.+
T Consensus 236 ~~~~~l~~~~~~~~~~L~~L~l~~n~-i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~ 293 (319)
T cd00116 236 AGAAALASALLSPNISLLTLSLSCND-ITDDGAKDLAEVLAEKESLLELDLRGNKFGEE 293 (319)
T ss_pred HHHHHHHHHHhccCCCceEEEccCCC-CCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence 22110 00 0023789999999884 42 3445555668999999999865433
No 48
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.47 E-value=6.8e-07 Score=101.56 Aligned_cols=190 Identities=18% Similarity=0.185 Sum_probs=112.8
Q ss_pred CccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 038751 171 SDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAII 250 (915)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 250 (915)
.+++|.+...+.|..++.... -.+.+.++|++|+||||+|+.+++.....+.+....|.|.+. +.+.
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~-----l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc--------~~i~ 80 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGR-----LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESC--------LAVR 80 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhh--------HHHh
Confidence 368999988888888886432 346679999999999999999887532222222222332211 0000
Q ss_pred H-------HhhCC-CCCcccHHHHHHHHHH-HhccCeEEEEEeCCCCCCccChhhhHHhhhcCCCCceEEEEcCc-hHHH
Q 038751 251 E-------GLEGS-LPNLRELNSLLEYIHT-SIKEKKFFLILDDVWPDDYSKWEPFHNCLMNGLCGSRILVTTRK-ETVA 320 (915)
Q Consensus 251 ~-------~l~~~-~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~-~~v~ 320 (915)
. .+... .....+..++...+.. -..+++-++|+|+++......++.+...+......+.+|++|.. ..+.
T Consensus 81 ~~~h~dv~el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~ 160 (504)
T PRK14963 81 RGAHPDVLEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMP 160 (504)
T ss_pred cCCCCceEEecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCC
Confidence 0 00000 0011111222222211 12345669999999766556677787777766556666666543 3332
Q ss_pred hhh-cCcCeEeCCCCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCCCchHH
Q 038751 321 RMM-ESTDVISIKELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKGLPLAA 377 (915)
Q Consensus 321 ~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~PLai 377 (915)
..+ .....+++.+++.++....+.+.+...+-... .+.+..|++.++|.+--+
T Consensus 161 ~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~i~----~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 161 PTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGREAE----PEALQLVARLADGAMRDA 214 (504)
T ss_pred hHHhcceEEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 222 23568999999999999999887644332122 245677889999988644
No 49
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.46 E-value=3.5e-06 Score=92.77 Aligned_cols=198 Identities=13% Similarity=0.078 Sum_probs=108.6
Q ss_pred CccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCC-eEEEEEeCCCCCHH-HHHH-
Q 038751 171 SDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFD-KRIWVCVSDPFDEF-RIAK- 247 (915)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~-~~~~- 247 (915)
.+++|++..++.+..++... ..+.+.++|++|+||||+|+.+.+... ...+. ..+.++++...+.. ....
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~GtGKT~la~~~~~~l~-~~~~~~~~~~i~~~~~~~~~~~~~~~ 87 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSP------NLPHLLVQGPPGSGKTAAVRALARELY-GDPWENNFTEFNVADFFDQGKKYLVE 87 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHHHhc-CcccccceEEechhhhhhcchhhhhc
Confidence 46899999999998888543 334578999999999999999887421 11122 22344433211000 0000
Q ss_pred --HHHHHhhCC-CCCcccHHHHHHHHHHH---h--ccCeEEEEEeCCCCCCccChhhhHHhhhcCCCCceEEEEcCchH-
Q 038751 248 --AIIEGLEGS-LPNLRELNSLLEYIHTS---I--KEKKFFLILDDVWPDDYSKWEPFHNCLMNGLCGSRILVTTRKET- 318 (915)
Q Consensus 248 --~i~~~l~~~-~~~~~~~~~~~~~l~~~---l--~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~- 318 (915)
.....+... .......+.....+... . .+.+-+||+||+..-.......+...+......+++|+|+....
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~ 167 (337)
T PRK12402 88 DPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSK 167 (337)
T ss_pred CcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhh
Confidence 000000000 00001112222222221 1 13445899999954433344556666655555677888775432
Q ss_pred HHhhh-cCcCeEeCCCCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCCCchHHHH
Q 038751 319 VARMM-ESTDVISIKELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKGLPLAAKT 379 (915)
Q Consensus 319 v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~PLai~~ 379 (915)
+...+ .....+++.+++.++...++.+.+...+-... .+..+.+++.++|.+-.+..
T Consensus 168 ~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~----~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 168 LIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDYD----DDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred CchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHH
Confidence 21211 22457899999999999998886543322122 34566788888887765543
No 50
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.45 E-value=2.5e-07 Score=92.11 Aligned_cols=51 Identities=25% Similarity=0.300 Sum_probs=33.9
Q ss_pred ccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccc
Q 038751 172 DVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVI 225 (915)
Q Consensus 172 ~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 225 (915)
.|+||+++.+++...|... .....+.+.|+|.+|+|||+|++.++......
T Consensus 1 ~fvgR~~e~~~l~~~l~~~---~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAA---QSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGT---SS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH---HcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 4899999999999999622 23456999999999999999999988854333
No 51
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.43 E-value=5.8e-06 Score=96.85 Aligned_cols=203 Identities=16% Similarity=0.143 Sum_probs=119.8
Q ss_pred CccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCC---CeEEEEEeCCC---CCHHH
Q 038751 171 SDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENF---DKRIWVCVSDP---FDEFR 244 (915)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~vs~~---~~~~~ 244 (915)
++++|++..++.+.+.+... ....+.|+|++|+||||+|+.+++.......+ ....|+.+... .+...
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~------~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~ 227 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASP------FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPRE 227 (615)
T ss_pred HhceeCcHHHHHHHHHHhcC------CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHH
Confidence 36899999999888877432 34569999999999999999998754333333 12345555421 12222
Q ss_pred HHHHH---------------HHHhhCCC----------------CCccc-HHHHHHHHHHHhccCeEEEEEeCCCCCCcc
Q 038751 245 IAKAI---------------IEGLEGSL----------------PNLRE-LNSLLEYIHTSIKEKKFFLILDDVWPDDYS 292 (915)
Q Consensus 245 ~~~~i---------------~~~l~~~~----------------~~~~~-~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~ 292 (915)
+...+ +...+... .+... ....+..+.+.++++++.++-|+.|..+..
T Consensus 228 i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~ 307 (615)
T TIGR02903 228 VTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPN 307 (615)
T ss_pred HhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCcc
Confidence 21111 11111000 00011 123567788888889999998888877777
Q ss_pred ChhhhHHhhhcCCCCceEEE--EcCchHH-Hhh-hcCcCeEeCCCCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHH
Q 038751 293 KWEPFHNCLMNGLCGSRILV--TTRKETV-ARM-MESTDVISIKELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVG 368 (915)
Q Consensus 293 ~~~~l~~~l~~~~~gs~iiv--TtR~~~v-~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~ 368 (915)
.|+.+...+..+.+...|++ ||++... ... ......+.+.+++.++.+.++.+.+..... ... .++.+.|.+
T Consensus 308 ~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v-~ls---~eal~~L~~ 383 (615)
T TIGR02903 308 VPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINV-HLA---AGVEELIAR 383 (615)
T ss_pred cchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHH
Confidence 88888777776655555555 5664321 111 122347789999999999999987642211 111 233344555
Q ss_pred hcCCCchHHHHHHhH
Q 038751 369 KCKGLPLAAKTIGSL 383 (915)
Q Consensus 369 ~c~G~PLai~~~~~~ 383 (915)
.+..-+.|+..++.+
T Consensus 384 ys~~gRraln~L~~~ 398 (615)
T TIGR02903 384 YTIEGRKAVNILADV 398 (615)
T ss_pred CCCcHHHHHHHHHHH
Confidence 554445555555433
No 52
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.42 E-value=1.7e-06 Score=82.41 Aligned_cols=125 Identities=19% Similarity=0.138 Sum_probs=73.1
Q ss_pred ccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 038751 174 RGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGL 253 (915)
Q Consensus 174 ~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 253 (915)
+|++..++.+...+... ..+.+.|+|++|+||||+++.+++... ..-..++++...+..........+...
T Consensus 1 ~~~~~~~~~i~~~~~~~------~~~~v~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~- 71 (151)
T cd00009 1 VGQEEAIEALREALELP------PPKNLLLYGPPGTGKTTLARAIANELF--RPGAPFLYLNASDLLEGLVVAELFGHF- 71 (151)
T ss_pred CchHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHhh--cCCCCeEEEehhhhhhhhHHHHHhhhh-
Confidence 47888889998888543 346789999999999999999998432 212345666665433322221111000
Q ss_pred hCCCCCcccHHHHHHHHHHHhccCeEEEEEeCCCCCCccChhhhHHhhhcC------CCCceEEEEcCchH
Q 038751 254 EGSLPNLRELNSLLEYIHTSIKEKKFFLILDDVWPDDYSKWEPFHNCLMNG------LCGSRILVTTRKET 318 (915)
Q Consensus 254 ~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~------~~gs~iivTtR~~~ 318 (915)
............++.++|+||++.........+...+... ..+..||+||....
T Consensus 72 -----------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 -----------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred -----------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0011111223456789999999743222233344444432 35778888887643
No 53
>PF13173 AAA_14: AAA domain
Probab=98.42 E-value=1.2e-06 Score=81.12 Aligned_cols=120 Identities=26% Similarity=0.324 Sum_probs=77.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHhccC
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLRELNSLLEYIHTSIKEK 277 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 277 (915)
.+++.|.|+.|+||||++++++.+.. ....+++++..+........ .+ +.+.+.+....+
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~----------------~~-~~~~~~~~~~~~ 61 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLAD----------------PD-LLEYFLELIKPG 61 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhh----------------hh-hHHHHHHhhccC
Confidence 36899999999999999999987432 23456777666532211000 00 222333333347
Q ss_pred eEEEEEeCCCCCCccChhhhHHhhhcCCCCceEEEEcCchHHHhh------hcCcCeEeCCCCCHHHH
Q 038751 278 KFFLILDDVWPDDYSKWEPFHNCLMNGLCGSRILVTTRKETVARM------MESTDVISIKELSEQEC 339 (915)
Q Consensus 278 ~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~------~~~~~~~~l~~L~~~~~ 339 (915)
+.+|++|++.. ...|......+.......+|++|+.+...... .+....++|.||+-.|.
T Consensus 62 ~~~i~iDEiq~--~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 62 KKYIFIDEIQY--LPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred CcEEEEehhhh--hccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 78899999954 35677766666665566799999987655432 12245789999998774
No 54
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.42 E-value=4.6e-06 Score=94.61 Aligned_cols=199 Identities=13% Similarity=0.160 Sum_probs=114.8
Q ss_pred CccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 038751 171 SDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAII 250 (915)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 250 (915)
.++||-+..++.|.+++.... -.+.+.++|..|+||||+|+.+.+...-...-.... + .+..+..-...+.|.
T Consensus 16 ddVIGQe~vv~~L~~al~~gR-----LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g-~-~~~PCG~C~sC~~I~ 88 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQR-----LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGG-I-TAQPCGQCRACTEID 88 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHhcCCCcccccc-C-CCCCCcccHHHHHHH
Confidence 468999999999999986432 346778999999999999988876321100000000 0 000111111111111
Q ss_pred HH-----hhCCCCCcccHHHHHHHHHHH----hccCeEEEEEeCCCCCCccChhhhHHhhhcCCCCceEEEEcCc-hHHH
Q 038751 251 EG-----LEGSLPNLRELNSLLEYIHTS----IKEKKFFLILDDVWPDDYSKWEPFHNCLMNGLCGSRILVTTRK-ETVA 320 (915)
Q Consensus 251 ~~-----l~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~-~~v~ 320 (915)
.. +..+......++++.+.+... ..++.-++|+|+++..+...++.+...+.....+.++|++|.+ ..+.
T Consensus 89 aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLl 168 (700)
T PRK12323 89 AGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIP 168 (700)
T ss_pred cCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhh
Confidence 10 000000111233333322221 1356669999999876667788888877776666776665554 3443
Q ss_pred hh-hcCcCeEeCCCCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCCCchHHHHH
Q 038751 321 RM-MESTDVISIKELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKGLPLAAKTI 380 (915)
Q Consensus 321 ~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~PLai~~~ 380 (915)
.. ......+++..++.++..+.+.+.+...+.... .+..+.|++.++|.|.-+..+
T Consensus 169 pTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~d----~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 169 VTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHE----VNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred hHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 22 233578999999999999988876543222121 234467899999999755444
No 55
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.40 E-value=8.1e-06 Score=92.96 Aligned_cols=187 Identities=16% Similarity=0.168 Sum_probs=113.9
Q ss_pred CccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccc-------------------cCCCeE
Q 038751 171 SDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVI-------------------ENFDKR 231 (915)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~F~~~ 231 (915)
.+++|.+..++.+...+... .-.+.+.++|+.|+||||+|+.+++...-. +.|...
T Consensus 16 ~diiGq~~~v~~L~~~i~~~-----rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dl 90 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQ-----KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDL 90 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCce
Confidence 46899999999999888543 134567899999999999999887631100 012122
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHH-HhccCeEEEEEeCCCCCCccChhhhHHhhhcCCCCceE
Q 038751 232 IWVCVSDPFDEFRIAKAIIEGLEGSLPNLRELNSLLEYIHT-SIKEKKFFLILDDVWPDDYSKWEPFHNCLMNGLCGSRI 310 (915)
Q Consensus 232 ~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~i 310 (915)
+++........ .+..++.+.+.. -..+++-++|+|++...+...++.+...+......+.+
T Consensus 91 ieidaas~~gv------------------d~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~f 152 (546)
T PRK14957 91 IEIDAASRTGV------------------EETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKF 152 (546)
T ss_pred EEeecccccCH------------------HHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceE
Confidence 22222111111 122223222221 12356679999999766666778888888876667766
Q ss_pred EEEcCc-hHHHhh-hcCcCeEeCCCCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCCCc-hHHHHHHhHh
Q 038751 311 LVTTRK-ETVARM-MESTDVISIKELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKGLP-LAAKTIGSLL 384 (915)
Q Consensus 311 ivTtR~-~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~P-Lai~~~~~~l 384 (915)
|++|.+ ..+... ......+++.+++.++....+.+.+...+-... .+....|++.++|.+ .|+..+-.++
T Consensus 153 IL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~~e----~~Al~~Ia~~s~GdlR~alnlLek~i 225 (546)
T PRK14957 153 ILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENINSD----EQSLEYIAYHAKGSLRDALSLLDQAI 225 (546)
T ss_pred EEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 655543 333322 334678999999999988888775433221122 234566888899966 4555554433
No 56
>PTZ00202 tuzin; Provisional
Probab=98.39 E-value=1.5e-05 Score=85.44 Aligned_cols=169 Identities=12% Similarity=0.124 Sum_probs=104.6
Q ss_pred cccccCccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHH
Q 038751 166 ALINVSDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRI 245 (915)
Q Consensus 166 ~~~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~ 245 (915)
.+.+...|+||+.|...+...|...+. ...+++.|+|++|+|||||++.+..... + .+++.-.. +..++
T Consensus 257 lPa~~~~FVGReaEla~Lr~VL~~~d~---~~privvLtG~~G~GKTTLlR~~~~~l~----~--~qL~vNpr--g~eEl 325 (550)
T PTZ00202 257 APAVIRQFVSREAEESWVRQVLRRLDT---AHPRIVVFTGFRGCGKSSLCRSAVRKEG----M--PAVFVDVR--GTEDT 325 (550)
T ss_pred CCCCccCCCCcHHHHHHHHHHHhccCC---CCceEEEEECCCCCCHHHHHHHHHhcCC----c--eEEEECCC--CHHHH
Confidence 344567899999999999999965432 2456999999999999999999986321 2 12222222 77999
Q ss_pred HHHHHHHhhCCCCCc--ccHHHHHHHHHHHh-c-cCeEEEEEeCCCCCC-ccChhhhHHhhhcCCCCceEEEEcCchHHH
Q 038751 246 AKAIIEGLEGSLPNL--RELNSLLEYIHTSI-K-EKKFFLILDDVWPDD-YSKWEPFHNCLMNGLCGSRILVTTRKETVA 320 (915)
Q Consensus 246 ~~~i~~~l~~~~~~~--~~~~~~~~~l~~~l-~-~k~~LlVlDdvw~~~-~~~~~~l~~~l~~~~~gs~iivTtR~~~v~ 320 (915)
++.++.+|+...... .-.+.+.+.+.+.- . +++.+||+-=-.-.+ ...+++. ..|.....-|+|++---.+...
T Consensus 326 Lr~LL~ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~-v~la~drr~ch~v~evpleslt 404 (550)
T PTZ00202 326 LRSVVKALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEV-VALACDRRLCHVVIEVPLESLT 404 (550)
T ss_pred HHHHHHHcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHH-HHHHccchhheeeeeehHhhcc
Confidence 999999999732211 11233344443322 2 667777764221010 0112221 2244445667788765544332
Q ss_pred hh---hcCcCeEeCCCCCHHHHHHHHHHh
Q 038751 321 RM---MESTDVISIKELSEQECWSLFKRF 346 (915)
Q Consensus 321 ~~---~~~~~~~~l~~L~~~~~~~lf~~~ 346 (915)
-. +..-..|.+.+++.++|..+-.+.
T Consensus 405 ~~~~~lprldf~~vp~fsr~qaf~y~~h~ 433 (550)
T PTZ00202 405 IANTLLPRLDFYLVPNFSRSQAFAYTQHA 433 (550)
T ss_pred hhcccCccceeEecCCCCHHHHHHHHhhc
Confidence 21 122458899999999998887664
No 57
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=1.1e-07 Score=100.11 Aligned_cols=183 Identities=19% Similarity=0.115 Sum_probs=118.5
Q ss_pred hccCCCCCCceEEEEecCCCCchhhhhhhhhHHHHhhHHHHHhhcCCCCCcceEEEeeeCCCCCCCccc--CccCccEEE
Q 038751 682 HLEKKKNLIDLILIFNEREESDDEKASEEMNEEKEAKHEAVCEALRPPPDIKSLEIMVFKGRTPSNWIG--SLNKLKMLT 759 (915)
Q Consensus 682 ~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~--~l~~L~~L~ 759 (915)
....|++++.|+|+.|-.. .-..+.+-..++|+|+.|+++.|....+-+... .++.|+.|.
T Consensus 141 ~~k~~~~v~~LdLS~NL~~-----------------nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~ 203 (505)
T KOG3207|consen 141 YSKILPNVRDLDLSRNLFH-----------------NWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLV 203 (505)
T ss_pred hhhhCCcceeecchhhhHH-----------------hHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEE
Confidence 4567888999999877422 234455666778999999999887544432222 688899999
Q ss_pred EcCcCC-CCCCCC-CCCCCCcceeeccccccceEeCccccCCcccccccccccCCC-----cccccCcccceeeecCccc
Q 038751 760 LNSFVK-CEIMPP-LGKLPSLEILRIWHMRSVKRVGDEFLGMEISDHIHIHGTSSS-----SSVIAFPKLQKLELTGMDE 832 (915)
Q Consensus 760 L~~~~~-~~~l~~-l~~Lp~L~~L~L~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~-----~~~~~f~~L~~L~l~~~~~ 832 (915)
|+.|.. .+++.. +..+|+|+.|.+.++..+..-.........++.|++++|... ...+.||.|..|.+..+ .
T Consensus 204 l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~t-g 282 (505)
T KOG3207|consen 204 LNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSST-G 282 (505)
T ss_pred eccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhcccc-C
Confidence 998863 233322 457899999999888644333333344566788888887432 23567888888888875 2
Q ss_pred ccccccCCC---C-cccCcccceeecccCccccCCC--cCCCCCCCcCeEeEcCCcc
Q 038751 833 LEEWDFGND---D-ITIMPHIKSLYITYCEKLKSLP--ELLLRSTTLESLTIFGVPI 883 (915)
Q Consensus 833 l~~~~~~~~---~-~~~lp~L~~L~l~~c~~L~~lp--~~l~~l~~L~~L~l~~c~~ 883 (915)
+.++.+.+. + ...||+|+.|++..++ ....+ ..+..+++|+.|.+..++.
T Consensus 283 i~si~~~d~~s~~kt~~f~kL~~L~i~~N~-I~~w~sl~~l~~l~nlk~l~~~~n~l 338 (505)
T KOG3207|consen 283 IASIAEPDVESLDKTHTFPKLEYLNISENN-IRDWRSLNHLRTLENLKHLRITLNYL 338 (505)
T ss_pred cchhcCCCccchhhhcccccceeeecccCc-cccccccchhhccchhhhhhcccccc
Confidence 334332211 1 2378999999998874 33343 2355566777777665544
No 58
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.37 E-value=7.1e-06 Score=94.83 Aligned_cols=194 Identities=14% Similarity=0.205 Sum_probs=115.1
Q ss_pred CccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 038751 171 SDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAII 250 (915)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 250 (915)
.+++|.+..++.|...+... .-.+.+.++|..|+||||+|+.+.+...-...+ .+..+..-...+.|.
T Consensus 16 ~divGQe~vv~~L~~~l~~~-----rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~-------~~~pCg~C~~C~~i~ 83 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLG-----RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGI-------TATPCGECDNCREIE 83 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCC-------CCCCCCCCHHHHHHH
Confidence 46899999999888888543 123567899999999999999987742111000 001111112222221
Q ss_pred HH-------hhCC-CCCcccHHHHHHHHHH-HhccCeEEEEEeCCCCCCccChhhhHHhhhcCCCCceEEEEcCch-HHH
Q 038751 251 EG-------LEGS-LPNLRELNSLLEYIHT-SIKEKKFFLILDDVWPDDYSKWEPFHNCLMNGLCGSRILVTTRKE-TVA 320 (915)
Q Consensus 251 ~~-------l~~~-~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~v~ 320 (915)
.. +... .....+..++.+.+.. -..+++-++|+|+++.-+....+.+...+.......++|++|.+. .+.
T Consensus 84 ~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl 163 (647)
T PRK07994 84 QGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (647)
T ss_pred cCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccc
Confidence 10 0000 0111112222222211 124667799999998777677888888888766677776666553 333
Q ss_pred hh-hcCcCeEeCCCCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCCCchHHHHH
Q 038751 321 RM-MESTDVISIKELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKGLPLAAKTI 380 (915)
Q Consensus 321 ~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~PLai~~~ 380 (915)
.. ......+++.+++.++....+.+.+-..+.... .+....|++.++|.+.-+..+
T Consensus 164 ~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~e----~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 164 VTILSRCLQFHLKALDVEQIRQQLEHILQAEQIPFE----PRALQLLARAADGSMRDALSL 220 (647)
T ss_pred hHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 22 233578999999999999998876532221122 234466888999988755444
No 59
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.36 E-value=1.2e-05 Score=90.98 Aligned_cols=194 Identities=15% Similarity=0.175 Sum_probs=112.7
Q ss_pred CccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCe-EEEEEeCCCCCHHHHHHHH
Q 038751 171 SDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDK-RIWVCVSDPFDEFRIAKAI 249 (915)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~~~~~i 249 (915)
.+++|-+..++.+...+... .-.+.+.++|+.|+||||+|+.+++...-...... ..+..+. .-.....+
T Consensus 21 ~dliGq~~vv~~L~~ai~~~-----ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~----~C~~C~~i 91 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILND-----RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCE----QCTNCISF 91 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCC----CChHHHHH
Confidence 46899998888888877543 12467889999999999999999874221111000 0000000 00111111
Q ss_pred HHHhhC-----CCCCcccHHHHHHHHHHH----hccCeEEEEEeCCCCCCccChhhhHHhhhcCCCCceEEE-EcCchHH
Q 038751 250 IEGLEG-----SLPNLRELNSLLEYIHTS----IKEKKFFLILDDVWPDDYSKWEPFHNCLMNGLCGSRILV-TTRKETV 319 (915)
Q Consensus 250 ~~~l~~-----~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiv-TtR~~~v 319 (915)
...... +.......+++...+... +.+++-++|+|+++.-....++.+...+......+.+|+ ||+...+
T Consensus 92 ~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI 171 (507)
T PRK06645 92 NNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKI 171 (507)
T ss_pred hcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHh
Confidence 110000 000011222232222211 235677999999987666778888888877666667665 4444444
Q ss_pred Hhhh-cCcCeEeCCCCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCCCchHH
Q 038751 320 ARMM-ESTDVISIKELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKGLPLAA 377 (915)
Q Consensus 320 ~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~PLai 377 (915)
...+ .....+++.+++.++....+.+.+...+...+ .+....|++.++|.+.-+
T Consensus 172 ~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie----~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 172 PATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTD----IEALRIIAYKSEGSARDA 226 (507)
T ss_pred hHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 4433 23567999999999999999888754332222 233456888899977544
No 60
>PLN03025 replication factor C subunit; Provisional
Probab=98.36 E-value=8.5e-06 Score=88.39 Aligned_cols=183 Identities=15% Similarity=0.082 Sum_probs=105.8
Q ss_pred CccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCe-EEEEEeCCCCCHHHHHHHH
Q 038751 171 SDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDK-RIWVCVSDPFDEFRIAKAI 249 (915)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~~~~~i 249 (915)
.+++|.++.++.|.+++... ..+-+.++|++|+||||+|+.+++... ...|.. ++=++.++..... ..+.+
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~eln~sd~~~~~-~vr~~ 84 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDG------NMPNLILSGPPGTGKTTSILALAHELL-GPNYKEAVLELNASDDRGID-VVRNK 84 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHHHh-cccCccceeeecccccccHH-HHHHH
Confidence 46889888888887776432 334577999999999999999887421 122221 1112222221211 22222
Q ss_pred HHHhhCCCCCcccHHHHHHHHHHHhccCeEEEEEeCCCCCCccChhhhHHhhhcCCCCceEEEEcCch-HHHhh-hcCcC
Q 038751 250 IEGLEGSLPNLRELNSLLEYIHTSIKEKKFFLILDDVWPDDYSKWEPFHNCLMNGLCGSRILVTTRKE-TVARM-MESTD 327 (915)
Q Consensus 250 ~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~-~~~~~ 327 (915)
+..+...... .-.++.-++++|++..-.....+.+...+......+++|+++... .+... .....
T Consensus 85 i~~~~~~~~~-------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~ 151 (319)
T PLN03025 85 IKMFAQKKVT-------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCA 151 (319)
T ss_pred HHHHHhcccc-------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhh
Confidence 2221110000 001346699999997655445556666665545567777776542 22111 12246
Q ss_pred eEeCCCCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCCCchHHH
Q 038751 328 VISIKELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKGLPLAAK 378 (915)
Q Consensus 328 ~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~PLai~ 378 (915)
.+++.++++++....+...+-..+-.-. .+....|++.++|-.-.+.
T Consensus 152 ~i~f~~l~~~~l~~~L~~i~~~egi~i~----~~~l~~i~~~~~gDlR~al 198 (319)
T PLN03025 152 IVRFSRLSDQEILGRLMKVVEAEKVPYV----PEGLEAIIFTADGDMRQAL 198 (319)
T ss_pred cccCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHH
Confidence 8999999999999998887644332222 2345678888988765443
No 61
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.35 E-value=2.2e-08 Score=109.47 Aligned_cols=147 Identities=18% Similarity=0.165 Sum_probs=75.4
Q ss_pred HhhccCCCCCCceEEEEecCCCCchhhhhhhhhHHHHhhHHHHHhhcCCCCCcceEEEeeeCCCC-----CCCcccCccC
Q 038751 680 NAHLEKKKNLIDLILIFNEREESDDEKASEEMNEEKEAKHEAVCEALRPPPDIKSLEIMVFKGRT-----PSNWIGSLNK 754 (915)
Q Consensus 680 ~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-----~p~~~~~l~~ 754 (915)
...+..+.+|++|+++.|.... . ....+...+...++|+.|++++|.... ++..+..+++
T Consensus 158 ~~~~~~~~~L~~L~l~~n~l~~--------~-------~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~ 222 (319)
T cd00116 158 AKALRANRDLKELNLANNGIGD--------A-------GIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKS 222 (319)
T ss_pred HHHHHhCCCcCEEECcCCCCch--------H-------HHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCC
Confidence 3445566677777777664321 0 122333445555777777877775432 2233445677
Q ss_pred ccEEEEcCcCCCC-CCCCCC-----CCCCcceeeccccccceEeCccccCCcccccccccccCCCcccccCcccceeeec
Q 038751 755 LKMLTLNSFVKCE-IMPPLG-----KLPSLEILRIWHMRSVKRVGDEFLGMEISDHIHIHGTSSSSSVIAFPKLQKLELT 828 (915)
Q Consensus 755 L~~L~L~~~~~~~-~l~~l~-----~Lp~L~~L~L~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~f~~L~~L~l~ 828 (915)
|++|++++|...+ .+..+. ..+.|++|++.+|. ++..+.... ......+++|+.|++.
T Consensus 223 L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~-i~~~~~~~l---------------~~~~~~~~~L~~l~l~ 286 (319)
T cd00116 223 LEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCND-ITDDGAKDL---------------AEVLAEKESLLELDLR 286 (319)
T ss_pred CCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCC-CCcHHHHHH---------------HHHHhcCCCccEEECC
Confidence 7888777764221 111111 23677777777764 221110000 0113356788888888
Q ss_pred CcccccccccC--CCCcccC-cccceeecccCc
Q 038751 829 GMDELEEWDFG--NDDITIM-PHIKSLYITYCE 858 (915)
Q Consensus 829 ~~~~l~~~~~~--~~~~~~l-p~L~~L~l~~c~ 858 (915)
++. +...... ...+..+ +.|++|++.+.|
T Consensus 287 ~N~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 287 GNK-FGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred CCC-CcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 753 3322100 0001234 678888877654
No 62
>PRK08727 hypothetical protein; Validated
Probab=98.35 E-value=1.2e-05 Score=82.67 Aligned_cols=148 Identities=14% Similarity=0.097 Sum_probs=89.0
Q ss_pred EEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHhccCe
Q 038751 199 QIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLRELNSLLEYIHTSIKEKK 278 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 278 (915)
..+.|+|..|+|||+|++.+++. .......+.++++.+ ....+. ..+.. + .+.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~--~~~~~~~~~y~~~~~------~~~~~~-----------------~~~~~-l-~~~ 94 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAA--AEQAGRSSAYLPLQA------AAGRLR-----------------DALEA-L-EGR 94 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEeHHH------hhhhHH-----------------HHHHH-H-hcC
Confidence 45999999999999999999884 333333556766432 111111 11111 1 233
Q ss_pred EEEEEeCCCCCC-ccChhh-hHHhhhc-CCCCceEEEEcCchH---------HHhhhcCcCeEeCCCCCHHHHHHHHHHh
Q 038751 279 FFLILDDVWPDD-YSKWEP-FHNCLMN-GLCGSRILVTTRKET---------VARMMESTDVISIKELSEQECWSLFKRF 346 (915)
Q Consensus 279 ~LlVlDdvw~~~-~~~~~~-l~~~l~~-~~~gs~iivTtR~~~---------v~~~~~~~~~~~l~~L~~~~~~~lf~~~ 346 (915)
-+||+||+.... ...|.. +...+.. ..+|..||+|++... +.+.+.....+++++++.++-.+++.++
T Consensus 95 dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~ 174 (233)
T PRK08727 95 SLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRER 174 (233)
T ss_pred CEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHH
Confidence 589999995321 122332 3332222 134667999998532 2223334568999999999999999987
Q ss_pred HcCCCCCCchhHHHHHHHHHHHhcCCCchHH
Q 038751 347 AFSGRSPTECEQLEEIGRKIVGKCKGLPLAA 377 (915)
Q Consensus 347 ~~~~~~~~~~~~l~~~~~~i~~~c~G~PLai 377 (915)
+...+-.-. +++..-|++.++|-.-.+
T Consensus 175 a~~~~l~l~----~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 175 AQRRGLALD----EAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHcCCCCC----HHHHHHHHHhCCCCHHHH
Confidence 754322122 345566888888766555
No 63
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.35 E-value=1.2e-05 Score=90.70 Aligned_cols=198 Identities=19% Similarity=0.231 Sum_probs=107.3
Q ss_pred CccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 038751 171 SDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAII 250 (915)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 250 (915)
.+++|.+...+.+...+... .-.+.+.++|++|+||||+|+.+++....... .. ..++..-.....+.
T Consensus 14 ~divGq~~i~~~L~~~i~~~-----~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~------~~-~~pc~~c~~c~~i~ 81 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKN-----SISHAYIFAGPRGTGKTTVARILAKSLNCENR------KG-VEPCNECRACRSID 81 (472)
T ss_pred HHccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhccccC------CC-CCCCcccHHHHHHh
Confidence 46899988888887777533 12356889999999999999998774211100 00 00000001111110
Q ss_pred HHhh-----CCCCCcccHHHHHHHHHHH-----hccCeEEEEEeCCCCCCccChhhhHHhhhcCCCCceEEEEcCc-hHH
Q 038751 251 EGLE-----GSLPNLRELNSLLEYIHTS-----IKEKKFFLILDDVWPDDYSKWEPFHNCLMNGLCGSRILVTTRK-ETV 319 (915)
Q Consensus 251 ~~l~-----~~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~-~~v 319 (915)
..-. .+.......+.+. .+.+. ..+++-++|+|+++.-.....+.+...+........+|++|.+ ..+
T Consensus 82 ~g~~~dv~el~aa~~~gid~iR-~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl 160 (472)
T PRK14962 82 EGTFMDVIELDAASNRGIDEIR-KIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKV 160 (472)
T ss_pred cCCCCccEEEeCcccCCHHHHH-HHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhh
Confidence 0000 0000001112211 11111 2345669999999654444556666666654444555555443 333
Q ss_pred Hhhh-cCcCeEeCCCCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcC-CCchHHHHHHhHhh
Q 038751 320 ARMM-ESTDVISIKELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCK-GLPLAAKTIGSLLR 385 (915)
Q Consensus 320 ~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~-G~PLai~~~~~~l~ 385 (915)
...+ .....+++.+++.++....+.+.+...+-... .+....|++.++ +++.|+..+-.+..
T Consensus 161 ~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i~----~eal~~Ia~~s~GdlR~aln~Le~l~~ 224 (472)
T PRK14962 161 PPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEID----REALSFIAKRASGGLRDALTMLEQVWK 224 (472)
T ss_pred hHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 3322 33568999999999999998887643322222 234556777665 55677777765443
No 64
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.34 E-value=8.5e-07 Score=91.08 Aligned_cols=89 Identities=19% Similarity=0.069 Sum_probs=62.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCC--CCHHHHHHHHHHHhhCCCCCcccH------HHHHHH
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDP--FDEFRIAKAIIEGLEGSLPNLREL------NSLLEY 269 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~~~~~i~~~l~~~~~~~~~~------~~~~~~ 269 (915)
-..+.|+|++|+|||||++.++++.... +|+.++|+.+.++ +++.++++.+...+-....+.... ......
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~ 94 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEK 94 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHH
Confidence 3578999999999999999999975444 8999999998777 789999999843332221111111 122222
Q ss_pred HHHH-hccCeEEEEEeCCC
Q 038751 270 IHTS-IKEKKFFLILDDVW 287 (915)
Q Consensus 270 l~~~-l~~k~~LlVlDdvw 287 (915)
.... -.+++.++++|++.
T Consensus 95 a~~~~~~G~~vll~iDei~ 113 (249)
T cd01128 95 AKRLVEHGKDVVILLDSIT 113 (249)
T ss_pred HHHHHHCCCCEEEEEECHH
Confidence 2222 25899999999994
No 65
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.34 E-value=1.5e-05 Score=86.98 Aligned_cols=182 Identities=14% Similarity=0.102 Sum_probs=106.1
Q ss_pred CccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEe--CCCCCHHHHHHH
Q 038751 171 SDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCV--SDPFDEFRIAKA 248 (915)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v--s~~~~~~~~~~~ 248 (915)
.+++|+++.++.+..++... ..+.+.++|..|+||||+|+.+.+... ...+.. .++.+ +..... ...+.
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~------~~~~~ll~G~~G~GKt~~~~~l~~~l~-~~~~~~-~~i~~~~~~~~~~-~~~~~ 87 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEK------NMPHLLFAGPPGTGKTTAALALARELY-GEDWRE-NFLELNASDERGI-DVIRN 87 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHHc-CCcccc-ceEEeccccccch-HHHHH
Confidence 46889999999999988542 334579999999999999999987421 111211 12222 221111 11112
Q ss_pred HHHHhhCCCCCcccHHHHHHHHHHHhccCeEEEEEeCCCCCCccChhhhHHhhhcCCCCceEEEEcCch-HHHh-hhcCc
Q 038751 249 IIEGLEGSLPNLRELNSLLEYIHTSIKEKKFFLILDDVWPDDYSKWEPFHNCLMNGLCGSRILVTTRKE-TVAR-MMEST 326 (915)
Q Consensus 249 i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~-~~~~~ 326 (915)
.+..+....+ .....+-++++|++..-.......+...+......+++|+++... .+.. .....
T Consensus 88 ~i~~~~~~~~--------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~ 153 (319)
T PRK00440 88 KIKEFARTAP--------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRC 153 (319)
T ss_pred HHHHHHhcCC--------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHh
Confidence 2221111100 001235689999985443334556666666555566777776432 1111 11224
Q ss_pred CeEeCCCCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCCCchHHHH
Q 038751 327 DVISIKELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKGLPLAAKT 379 (915)
Q Consensus 327 ~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~PLai~~ 379 (915)
..+++.+++.++....+...+...+-.-. .+....+++.++|.+.-+..
T Consensus 154 ~~~~~~~l~~~ei~~~l~~~~~~~~~~i~----~~al~~l~~~~~gd~r~~~~ 202 (319)
T PRK00440 154 AVFRFSPLKKEAVAERLRYIAENEGIEIT----DDALEAIYYVSEGDMRKAIN 202 (319)
T ss_pred heeeeCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHH
Confidence 57899999999999888887644332222 23456678889998766433
No 66
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.34 E-value=9.6e-06 Score=89.83 Aligned_cols=193 Identities=13% Similarity=0.091 Sum_probs=113.2
Q ss_pred CccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 038751 171 SDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAII 250 (915)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 250 (915)
.+++|.+..+..|..++.... -.+.+.++|+.|+||||+|+.+++...-.. ... ...+..... ...+.
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~r-----i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~-~~~--~~pCg~C~s----C~~i~ 85 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGK-----IGHAYIFFGPRGVGKTTIARILAKRLNCEN-PIG--NEPCNECTS----CLEIT 85 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhcCccc-ccC--ccccCCCcH----HHHHH
Confidence 468999988888888886431 235689999999999999999987421110 000 000111111 11221
Q ss_pred HHhhCC--------CCCcccHHHHHHHHHH-HhccCeEEEEEeCCCCCCccChhhhHHhhhcCCCCceEEEEcCc-hHHH
Q 038751 251 EGLEGS--------LPNLRELNSLLEYIHT-SIKEKKFFLILDDVWPDDYSKWEPFHNCLMNGLCGSRILVTTRK-ETVA 320 (915)
Q Consensus 251 ~~l~~~--------~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~-~~v~ 320 (915)
...... ..+..+..++.+.+.. ...++.-++|+|+++.-..+.++.+...+........+|++|.. ..+.
T Consensus 86 ~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~ 165 (484)
T PRK14956 86 KGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIP 165 (484)
T ss_pred ccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhcc
Confidence 111100 0111122222222221 12356669999999877677788887777665556666655554 3333
Q ss_pred hh-hcCcCeEeCCCCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCCCchHHHH
Q 038751 321 RM-MESTDVISIKELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKGLPLAAKT 379 (915)
Q Consensus 321 ~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~PLai~~ 379 (915)
.. ......+.+.+++.++..+.+.+.+...+.... .+....|++.++|.+.-+..
T Consensus 166 ~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~e----~eAL~~Ia~~S~Gd~RdAL~ 221 (484)
T PRK14956 166 ETILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQYD----QEGLFWIAKKGDGSVRDMLS 221 (484)
T ss_pred HHHHhhhheeeecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCChHHHHHH
Confidence 22 233568999999999999988887643322122 24457788999998865433
No 67
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.30 E-value=7.6e-06 Score=96.69 Aligned_cols=170 Identities=21% Similarity=0.309 Sum_probs=95.7
Q ss_pred CccccchHHHH---HHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHH
Q 038751 171 SDVRGRDEEKN---ILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAK 247 (915)
Q Consensus 171 ~~~~Gr~~~~~---~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 247 (915)
.+++|.+..+. .+.+.+.. +....+.++|++|+||||||+.+++. ...+|.. ++.+. ...
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~------~~~~slLL~GPpGtGKTTLA~aIA~~--~~~~f~~---lna~~-~~i----- 90 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKA------DRVGSLILYGPPGVGKTTLARIIANH--TRAHFSS---LNAVL-AGV----- 90 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhc------CCCceEEEECCCCCCHHHHHHHHHHH--hcCccee---ehhhh-hhh-----
Confidence 45888887664 44455532 24556789999999999999999983 3344411 11110 000
Q ss_pred HHHHHhhCCCCCcccHHHHHHHHHHHh--ccCeEEEEEeCCCCCCccChhhhHHhhhcCCCCceEEEE--cCchH--HHh
Q 038751 248 AIIEGLEGSLPNLRELNSLLEYIHTSI--KEKKFFLILDDVWPDDYSKWEPFHNCLMNGLCGSRILVT--TRKET--VAR 321 (915)
Q Consensus 248 ~i~~~l~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivT--tR~~~--v~~ 321 (915)
.+..+......+.+ .+++.+||+||++.-+...++.+...+. .|+.++++ |.++. +..
T Consensus 91 -------------~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~ 154 (725)
T PRK13341 91 -------------KDLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNK 154 (725)
T ss_pred -------------HHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhh
Confidence 01111112221212 2467799999997655555555554433 35555553 33331 211
Q ss_pred -hhcCcCeEeCCCCCHHHHHHHHHHhHcC------CCCCCchhHHHHHHHHHHHhcCCCchH
Q 038751 322 -MMESTDVISIKELSEQECWSLFKRFAFS------GRSPTECEQLEEIGRKIVGKCKGLPLA 376 (915)
Q Consensus 322 -~~~~~~~~~l~~L~~~~~~~lf~~~~~~------~~~~~~~~~l~~~~~~i~~~c~G~PLa 376 (915)
.......+.+++++.++...++.+.+-. ...... -.+....|++.+.|..-.
T Consensus 155 aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I---~deaL~~La~~s~GD~R~ 213 (725)
T PRK13341 155 ALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDL---EPEAEKHLVDVANGDARS 213 (725)
T ss_pred HhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCC---CHHHHHHHHHhCCCCHHH
Confidence 1223568999999999999999876531 111111 124456677788876543
No 68
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.30 E-value=3e-08 Score=102.67 Aligned_cols=99 Identities=21% Similarity=0.225 Sum_probs=56.0
Q ss_pred cceEEEEEEccccccCc-cccCCCCceeEEEeccCCCCceecccc-chhccccCCcceeeecCC-CCCccccccc-cCCC
Q 038751 533 EKLRHLMLVLGFWAKFP-FSIFDAKTLHSLILVYSSNNQVAASPV-LQGLFDQLTCLRALKIED-LPPTIKIPKG-LENL 608 (915)
Q Consensus 533 ~~~r~Lsl~~~~~~~~~-~~~~~~~~Lr~L~l~~~~~~lrv~~~~-lp~~i~~L~~Lr~L~l~~-~~~~~~lP~~-i~~L 608 (915)
...-.+.+..|.+..+| ..+..+++||.|+++.|. |+. -|+.|..|..|-.|-+-+ +.+. .+|+. +++|
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~------Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL 139 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNN------ISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGL 139 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccc------hhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhH
Confidence 44555666666666544 356667777777776663 332 356666666666655444 4443 66665 5666
Q ss_pred cCCCccc-----CcccCCc-CCCCCCCCccCceeec
Q 038751 609 IHLRYLK-----LSMVPNG-IERLTSLRTLSEFAVA 638 (915)
Q Consensus 609 ~~Lr~L~-----l~~lP~~-i~~L~~L~~L~~~~~~ 638 (915)
..|+.|. +..++.+ +..|++|..|.++.+.
T Consensus 140 ~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~ 175 (498)
T KOG4237|consen 140 SSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNK 175 (498)
T ss_pred HHHHHHhcChhhhcchhHHHHHHhhhcchhcccchh
Confidence 6666665 2333322 4556666666555443
No 69
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.30 E-value=2.9e-05 Score=84.81 Aligned_cols=197 Identities=12% Similarity=0.033 Sum_probs=114.6
Q ss_pred cCccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEE---EEeCCCCCHHHHH
Q 038751 170 VSDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIW---VCVSDPFDEFRIA 246 (915)
Q Consensus 170 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~w---v~vs~~~~~~~~~ 246 (915)
..+++|.+...+.+.+.+.... -...+.++|+.|+||+|+|..+.+..--......... ...-.....-...
T Consensus 18 ~~~iiGq~~~~~~L~~~~~~~r-----l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c 92 (365)
T PRK07471 18 TTALFGHAAAEAALLDAYRSGR-----LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVA 92 (365)
T ss_pred hhhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHH
Confidence 3579999999999998886432 3457889999999999999776553110110000000 0000000000111
Q ss_pred HHHHHHhhCC--------------CCCcccHHHHHHHHHHHh-----ccCeEEEEEeCCCCCCccChhhhHHhhhcCCCC
Q 038751 247 KAIIEGLEGS--------------LPNLRELNSLLEYIHTSI-----KEKKFFLILDDVWPDDYSKWEPFHNCLMNGLCG 307 (915)
Q Consensus 247 ~~i~~~l~~~--------------~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~g 307 (915)
+.|...-..+ ....-.++++. .+.+.+ .+.+.++|+||+...+....+.+...+.....+
T Consensus 93 ~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR-~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~ 171 (365)
T PRK07471 93 RRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVR-ELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPAR 171 (365)
T ss_pred HHHHccCCCCeEEEecccccccccccccccHHHHH-HHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCC
Confidence 1111100000 00111233322 233333 256679999999877777888888888776667
Q ss_pred ceEEEEcCchH-HHhh-hcCcCeEeCCCCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCCCchHHHHH
Q 038751 308 SRILVTTRKET-VARM-MESTDVISIKELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKGLPLAAKTI 380 (915)
Q Consensus 308 s~iivTtR~~~-v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~PLai~~~ 380 (915)
+.+|++|.+.. +... ......+.+.+++.++..+++...... ... +....+++.++|.|+.+..+
T Consensus 172 ~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~----~~~----~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 172 SLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD----LPD----DPRAALAALAEGSVGRALRL 238 (365)
T ss_pred eEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc----CCH----HHHHHHHHHcCCCHHHHHHH
Confidence 77777777653 3222 233568999999999999999876421 111 11256889999999876554
No 70
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.29 E-value=1.6e-05 Score=91.81 Aligned_cols=197 Identities=12% Similarity=0.170 Sum_probs=112.8
Q ss_pred CccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCC--CeEEEEEeCCCCCHHHHHHH
Q 038751 171 SDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENF--DKRIWVCVSDPFDEFRIAKA 248 (915)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~~~~~ 248 (915)
.+++|-+..++.|.+++.... -.+.+.++|..|+||||+|+.+.+...-.+.. ... ....++.-...+.
T Consensus 16 ~dviGQe~vv~~L~~~l~~~r-----l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~----~~~pCg~C~~C~~ 86 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQR-----LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGI----TATPCGVCQACRD 86 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCC----CCCCCCccHHHHH
Confidence 468998888888888886432 34677899999999999998885531110000 000 0011111122222
Q ss_pred HHHHhh-----CCCCCcccHHHHHHHHHHH----hccCeEEEEEeCCCCCCccChhhhHHhhhcCCCCceEEEEcCc-hH
Q 038751 249 IIEGLE-----GSLPNLRELNSLLEYIHTS----IKEKKFFLILDDVWPDDYSKWEPFHNCLMNGLCGSRILVTTRK-ET 318 (915)
Q Consensus 249 i~~~l~-----~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~-~~ 318 (915)
|...-. .+.......+++.+.+... ..++.-++|+|+++.-+...++.+...+.......++|++|.+ ..
T Consensus 87 i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~k 166 (618)
T PRK14951 87 IDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQK 166 (618)
T ss_pred HHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchh
Confidence 211000 0000011222332222211 1244558999999877667777888777766666677766543 33
Q ss_pred HHh-hhcCcCeEeCCCCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCCCchHHHHH
Q 038751 319 VAR-MMESTDVISIKELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKGLPLAAKTI 380 (915)
Q Consensus 319 v~~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~PLai~~~ 380 (915)
+.. .......+++++++.++....+.+.+...+-..+ .+....|++.++|.+.-+..+
T Consensus 167 il~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie----~~AL~~La~~s~GslR~al~l 225 (618)
T PRK14951 167 VPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAE----PQALRLLARAARGSMRDALSL 225 (618)
T ss_pred hhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 332 2334678999999999999998877643332222 234566888899877655443
No 71
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.28 E-value=1.6e-05 Score=90.68 Aligned_cols=193 Identities=12% Similarity=0.120 Sum_probs=110.4
Q ss_pred CccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 038751 171 SDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAII 250 (915)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 250 (915)
.+++|-+..++.+..++.... -.+.+.++|+.|+||||+|+.+.+...-...+. ...++.-...+.|.
T Consensus 16 ~divGq~~v~~~L~~~~~~~~-----l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~-------~~pCg~C~~C~~i~ 83 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQY-----LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVS-------ANPCNDCENCREID 83 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-----CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCC-------cccCCCCHHHHHHh
Confidence 468999999999999995431 245678999999999999988876321111110 00011111111111
Q ss_pred HHhh-----CCCCCcccHHHHHHHHHH----HhccCeEEEEEeCCCCCCccChhhhHHhhhcCCCCceEEEEcCch-HHH
Q 038751 251 EGLE-----GSLPNLRELNSLLEYIHT----SIKEKKFFLILDDVWPDDYSKWEPFHNCLMNGLCGSRILVTTRKE-TVA 320 (915)
Q Consensus 251 ~~l~-----~~~~~~~~~~~~~~~l~~----~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~v~ 320 (915)
..-. .+.......+++.+.+.. -..++.-++|+|+++.-+....+.+...+......+++|++|.+. .+.
T Consensus 84 ~g~~~d~~eidaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~ 163 (509)
T PRK14958 84 EGRFPDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLP 163 (509)
T ss_pred cCCCceEEEEcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhch
Confidence 0000 000001112222222211 113566689999997766667778888887766677777766543 332
Q ss_pred hh-hcCcCeEeCCCCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCCCchHHHH
Q 038751 321 RM-MESTDVISIKELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKGLPLAAKT 379 (915)
Q Consensus 321 ~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~PLai~~ 379 (915)
.. ......+++.+++.++....+.+.+-..+-...+ +....|++.++|.+.-+..
T Consensus 164 ~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~~----~al~~ia~~s~GslR~al~ 219 (509)
T PRK14958 164 VTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFEN----AALDLLARAANGSVRDALS 219 (509)
T ss_pred HHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHcCCcHHHHHH
Confidence 22 2235678999999999888776665333222222 3355688889998765544
No 72
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.28 E-value=2.7e-05 Score=85.75 Aligned_cols=190 Identities=11% Similarity=0.105 Sum_probs=109.7
Q ss_pred CccccchHHHHHHHHHHhccccc----ccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHH
Q 038751 171 SDVRGRDEEKNILKRKLLCESNE----ERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIA 246 (915)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~ 246 (915)
.+++|-+..++.+..++...... ...-.+-+.++|+.|+|||++|+.+.+...-... . + ..++.-...
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~--~--~----~~Cg~C~~C 76 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDP--D--E----PGCGECRAC 76 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCC--C--C----CCCCCCHHH
Confidence 36889999999999988654210 0112467889999999999999887652110000 0 0 000000111
Q ss_pred HHHHHHhhCCCC---------CcccHHHHHHHHHHH----hccCeEEEEEeCCCCCCccChhhhHHhhhcCCCCceEEEE
Q 038751 247 KAIIEGLEGSLP---------NLRELNSLLEYIHTS----IKEKKFFLILDDVWPDDYSKWEPFHNCLMNGLCGSRILVT 313 (915)
Q Consensus 247 ~~i~~~l~~~~~---------~~~~~~~~~~~l~~~----l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivT 313 (915)
+.+.. +..+ .....+++.+.+... ..+++-++|+|++...+....+.+...+.....+..+|++
T Consensus 77 ~~~~~---~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~ 153 (394)
T PRK07940 77 RTVLA---GTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLC 153 (394)
T ss_pred HHHhc---CCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEE
Confidence 11100 0000 001122222211111 1245558888999766666667787777776667777776
Q ss_pred cCch-HHHhh-hcCcCeEeCCCCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCCCchHHHHH
Q 038751 314 TRKE-TVARM-MESTDVISIKELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKGLPLAAKTI 380 (915)
Q Consensus 314 tR~~-~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~PLai~~~ 380 (915)
|.+. .+... ......+.+.+++.++....+.+... .. .+.+..+++.++|.|..+..+
T Consensus 154 a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~-----~~----~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 154 APSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG-----VD----PETARRAARASQGHIGRARRL 213 (394)
T ss_pred ECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC-----CC----HHHHHHHHHHcCCCHHHHHHH
Confidence 6664 33322 23356899999999999988875421 11 234677899999999765444
No 73
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.27 E-value=4.1e-05 Score=84.97 Aligned_cols=182 Identities=15% Similarity=0.164 Sum_probs=108.8
Q ss_pred CccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccc--------------------cCCCe
Q 038751 171 SDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVI--------------------ENFDK 230 (915)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--------------------~~F~~ 230 (915)
.+++|.+..++.+.+++... .-.+.+.++|++|+||||+|+.+.....-. .+++.
T Consensus 14 ~~iig~~~~~~~l~~~~~~~-----~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~ 88 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNG-----RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV 88 (355)
T ss_pred hhccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE
Confidence 46899999999999988543 134678899999999999998886532100 12222
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHH-HhccCeEEEEEeCCCCCCccChhhhHHhhhcCCCCce
Q 038751 231 RIWVCVSDPFDEFRIAKAIIEGLEGSLPNLRELNSLLEYIHT-SIKEKKFFLILDDVWPDDYSKWEPFHNCLMNGLCGSR 309 (915)
Q Consensus 231 ~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~ 309 (915)
.++..+..... .+..++.+.+.. -..+++-++|+|++..-.....+.+...+......+.
T Consensus 89 -~~~~~~~~~~~------------------~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~ 149 (355)
T TIGR02397 89 -IEIDAASNNGV------------------DDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVV 149 (355)
T ss_pred -EEeeccccCCH------------------HHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCcccee
Confidence 22211111111 011112221111 0124455889999854433456667777765556677
Q ss_pred EEEEcCchH-HHhh-hcCcCeEeCCCCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCCCchHHHHH
Q 038751 310 ILVTTRKET-VARM-MESTDVISIKELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKGLPLAAKTI 380 (915)
Q Consensus 310 iivTtR~~~-v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~PLai~~~ 380 (915)
+|++|.+.. +... ......+++.++++++...++...+-..+-... .+.+..+++.++|.|..+...
T Consensus 150 lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~----~~a~~~l~~~~~g~~~~a~~~ 218 (355)
T TIGR02397 150 FILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIE----DEALELIARAADGSLRDALSL 218 (355)
T ss_pred EEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCChHHHHHH
Confidence 777765543 2222 223568899999999999988876643321111 255677889999988765444
No 74
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.27 E-value=2.2e-05 Score=80.90 Aligned_cols=153 Identities=16% Similarity=0.116 Sum_probs=91.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHhccC
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLRELNSLLEYIHTSIKEK 277 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 277 (915)
...+.|+|+.|+|||+|++.+++.. ...-..+.++++..... ...+..+.+ ..
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~--~~~~~~v~y~~~~~~~~--------------------~~~~~~~~~----~~- 97 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAEL--SQRGRAVGYVPLDKRAW--------------------FVPEVLEGM----EQ- 97 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH--HhCCCeEEEEEHHHHhh--------------------hhHHHHHHh----hh-
Confidence 3578999999999999999998842 22223455666543100 001111111 11
Q ss_pred eEEEEEeCCCCCC-ccChhh-hHHhhhcC-CCC-ceEEEEcCchH---------HHhhhcCcCeEeCCCCCHHHHHHHHH
Q 038751 278 KFFLILDDVWPDD-YSKWEP-FHNCLMNG-LCG-SRILVTTRKET---------VARMMESTDVISIKELSEQECWSLFK 344 (915)
Q Consensus 278 ~~LlVlDdvw~~~-~~~~~~-l~~~l~~~-~~g-s~iivTtR~~~---------v~~~~~~~~~~~l~~L~~~~~~~lf~ 344 (915)
--+|++||+.... ...|+. +...+... ..| .++|+||+.+. ..+.+....+++++++++++-.+++.
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~ 177 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQ 177 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHH
Confidence 2378999995422 134543 33333221 233 37999998642 33345556899999999999999998
Q ss_pred HhHcCCCCCCchhHHHHHHHHHHHhcCCCchHHHHHH
Q 038751 345 RFAFSGRSPTECEQLEEIGRKIVGKCKGLPLAAKTIG 381 (915)
Q Consensus 345 ~~~~~~~~~~~~~~l~~~~~~i~~~c~G~PLai~~~~ 381 (915)
+++...+- .. -+++..-|++.+.|..-++..+-
T Consensus 178 ~~a~~~~~-~l---~~~v~~~L~~~~~~d~r~l~~~l 210 (235)
T PRK08084 178 LRARLRGF-EL---PEDVGRFLLKRLDREMRTLFMTL 210 (235)
T ss_pred HHHHHcCC-CC---CHHHHHHHHHhhcCCHHHHHHHH
Confidence 86643221 11 13566778888887776654443
No 75
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.27 E-value=2.4e-05 Score=89.19 Aligned_cols=196 Identities=17% Similarity=0.171 Sum_probs=113.1
Q ss_pred CccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 038751 171 SDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAII 250 (915)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 250 (915)
.+++|++..++.+.+++.... -.+.+.++|+.|+||||+|+.+.+... |.-|... ..++.-...+.+.
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~r-----l~hA~Lf~GP~GvGKTTlA~~lAk~L~------C~~~~~~-~~Cg~C~sCr~i~ 83 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNK-----LTHAYIFSGPRGIGKTSIAKIFAKAIN------CLNPKDG-DCCNSCSVCESIN 83 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHhc------CCCCCCC-CCCcccHHHHHHH
Confidence 478999999999998885432 246788999999999999999876321 1112211 1111222222222
Q ss_pred HHhhCC--------CCCcccHHHHHHHHHHH-hccCeEEEEEeCCCCCCccChhhhHHhhhcCCCCceEEEEcCc-hHHH
Q 038751 251 EGLEGS--------LPNLRELNSLLEYIHTS-IKEKKFFLILDDVWPDDYSKWEPFHNCLMNGLCGSRILVTTRK-ETVA 320 (915)
Q Consensus 251 ~~l~~~--------~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~-~~v~ 320 (915)
...... .....+...+...+... ..+++-++|+|++..-....++.+...+......+.+|++|.. ..+.
T Consensus 84 ~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl 163 (605)
T PRK05896 84 TNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIP 163 (605)
T ss_pred cCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhh
Confidence 111000 01111122222222111 1234447999999765556777888877766666666665543 3332
Q ss_pred hh-hcCcCeEeCCCCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCCCch-HHHHHHh
Q 038751 321 RM-MESTDVISIKELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKGLPL-AAKTIGS 382 (915)
Q Consensus 321 ~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~PL-ai~~~~~ 382 (915)
.. ......+++.+++.++....+...+...+.... .+.+..+++.++|.+. |+..+-.
T Consensus 164 ~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is----~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 164 LTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKIE----DNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred HHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCcHHHHHHHHHH
Confidence 22 233568999999999999888876543221111 2346678888999664 5554444
No 76
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.27 E-value=2.4e-05 Score=87.88 Aligned_cols=181 Identities=19% Similarity=0.172 Sum_probs=110.6
Q ss_pred CccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccc-------------------cCCCeE
Q 038751 171 SDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVI-------------------ENFDKR 231 (915)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~F~~~ 231 (915)
.+++|.+..++.+.+.+... .-.+.+.++|+.|+||||+|+.+.....-. +.+.-+
T Consensus 13 ~dliGQe~vv~~L~~a~~~~-----ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv 87 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLN-----KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDV 87 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCE
Confidence 46899998888888777533 124578999999999999998886521000 011112
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHhccCeEEEEEeCCCCCCccChhhhHHhhhcCCCCceEE
Q 038751 232 IWVCVSDPFDEFRIAKAIIEGLEGSLPNLRELNSLLEYIHTSIKEKKFFLILDDVWPDDYSKWEPFHNCLMNGLCGSRIL 311 (915)
Q Consensus 232 ~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~ii 311 (915)
+.++.+....+.+ .+.+++...- .-..++.-++|+|+++.-+....+.+...+......+++|
T Consensus 88 ~eidaas~~~vdd-IR~Iie~~~~----------------~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fI 150 (491)
T PRK14964 88 IEIDAASNTSVDD-IKVILENSCY----------------LPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFI 150 (491)
T ss_pred EEEecccCCCHHH-HHHHHHHHHh----------------ccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEE
Confidence 2233222222111 1111111100 0013456689999997655566777888887776777777
Q ss_pred EEcCc-hHHHhh-hcCcCeEeCCCCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCCCchHH
Q 038751 312 VTTRK-ETVARM-MESTDVISIKELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKGLPLAA 377 (915)
Q Consensus 312 vTtR~-~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~PLai 377 (915)
++|.. ..+... ......+++.+++.++....+.+.+...+-... .+....|++.++|.+..+
T Consensus 151 latte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i~----~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 151 LATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHD----EESLKLIAENSSGSMRNA 214 (491)
T ss_pred EEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 76643 344332 233678999999999999999887654332222 234566888899887644
No 77
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.27 E-value=2.8e-05 Score=84.39 Aligned_cols=197 Identities=15% Similarity=0.137 Sum_probs=117.0
Q ss_pred cCccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhccccccc--CCCeEEEEEeCCCCCHHHHHH
Q 038751 170 VSDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIE--NFDKRIWVCVSDPFDEFRIAK 247 (915)
Q Consensus 170 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~F~~~~wv~vs~~~~~~~~~~ 247 (915)
...++|.+...+.+...+.... -...+.|+|+.|+||||+|+.+.+..--.. .+... .....+..-...+
T Consensus 22 ~~~l~Gh~~a~~~L~~a~~~gr-----l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~ 93 (351)
T PRK09112 22 NTRLFGHEEAEAFLAQAYREGK-----LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWR 93 (351)
T ss_pred hhhccCcHHHHHHHHHHHHcCC-----CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHH
Confidence 4578999999999999886432 345789999999999999988776321100 01111 0111111112333
Q ss_pred HHHHH-------hhCC--C-----CCcccHHHHHHHHHHHh-----ccCeEEEEEeCCCCCCccChhhhHHhhhcCCCCc
Q 038751 248 AIIEG-------LEGS--L-----PNLRELNSLLEYIHTSI-----KEKKFFLILDDVWPDDYSKWEPFHNCLMNGLCGS 308 (915)
Q Consensus 248 ~i~~~-------l~~~--~-----~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs 308 (915)
.|... +... . ...-.++++. .+.+.+ .+++-++|+|++...+....+.+...+.......
T Consensus 94 ~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR-~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~ 172 (351)
T PRK09112 94 QIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIR-RVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARA 172 (351)
T ss_pred HHHcCCCCCEEEeecccccccccccccCCHHHHH-HHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCc
Confidence 33221 1000 0 0111233332 333333 3566799999998777677778888887755556
Q ss_pred eEEEEcCch-HHHhh-hcCcCeEeCCCCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCCCchHHHHHH
Q 038751 309 RILVTTRKE-TVARM-MESTDVISIKELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKGLPLAAKTIG 381 (915)
Q Consensus 309 ~iivTtR~~-~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~PLai~~~~ 381 (915)
.+|++|..+ .+... ......+++.+++.++...++.+...... .. .+.+..|++.++|.|..+..+.
T Consensus 173 ~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~--~~----~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 173 LFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG--SD----GEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred eEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC--CC----HHHHHHHHHHcCCCHHHHHHHH
Confidence 655555443 22221 22356999999999999999987432111 11 2345678999999998765543
No 78
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.27 E-value=1.5e-05 Score=91.66 Aligned_cols=194 Identities=16% Similarity=0.152 Sum_probs=110.5
Q ss_pred CccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 038751 171 SDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAII 250 (915)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 250 (915)
.+++|.+..++.|..++.... -.+.+.++|+.|+||||+|+.+.+......... + ..+..-...+.|.
T Consensus 16 ddIIGQe~vv~~L~~ai~~~r-----l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~---~----~pCg~C~sCr~i~ 83 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGR-----LHHAYLLTGTRGVGKTTIARILAKSLNCENAQH---G----EPCGVCQSCTQID 83 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCcHHHHHHHHHHHhcccCCCC---C----CCCcccHHHHHHh
Confidence 469999999999999986432 246789999999999999998876321111000 0 0000001111110
Q ss_pred HH-----hhCCCCCcccHHHHHHHHHH----HhccCeEEEEEeCCCCCCccChhhhHHhhhcCCCCceEEEEcCch-HHH
Q 038751 251 EG-----LEGSLPNLRELNSLLEYIHT----SIKEKKFFLILDDVWPDDYSKWEPFHNCLMNGLCGSRILVTTRKE-TVA 320 (915)
Q Consensus 251 ~~-----l~~~~~~~~~~~~~~~~l~~----~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~v~ 320 (915)
.. +..+.......+.+.+.+.. -..+++-++|+|++...+....+.+...+......+++|++|.+. .+.
T Consensus 84 ~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~ 163 (709)
T PRK08691 84 AGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVP 163 (709)
T ss_pred ccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccc
Confidence 00 00000001112222222221 113566789999996555445666777776655567777777543 222
Q ss_pred hh-hcCcCeEeCCCCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCCCchHHHHH
Q 038751 321 RM-MESTDVISIKELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKGLPLAAKTI 380 (915)
Q Consensus 321 ~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~PLai~~~ 380 (915)
.. .+....+++.+++.++....+.+.+-..+-... .+....|++.++|.+.-+..+
T Consensus 164 ~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~id----~eAL~~Ia~~A~GslRdAlnL 220 (709)
T PRK08691 164 VTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYE----PPALQLLGRAAAGSMRDALSL 220 (709)
T ss_pred hHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCcC----HHHHHHHHHHhCCCHHHHHHH
Confidence 11 223457889999999999999877644332222 234567888999988654443
No 79
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.26 E-value=2.1e-05 Score=80.95 Aligned_cols=152 Identities=17% Similarity=0.117 Sum_probs=87.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHhccC
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLRELNSLLEYIHTSIKEK 277 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 277 (915)
.+.+.|+|..|+|||+||+.+++... ...+ ...+++..... .. + ... ..
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~-~~~~-~~~~i~~~~~~------~~----~------------------~~~-~~ 90 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADAS-YGGR-NARYLDAASPL------LA----F------------------DFD-PE 90 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH-hCCC-cEEEEehHHhH------HH----H------------------hhc-cc
Confidence 45788999999999999999988421 2222 23444443211 00 0 011 22
Q ss_pred eEEEEEeCCCCCCccChhhhHHhhhcC-CCCc-eEEEEcCchHHHh--------hhcCcCeEeCCCCCHHHHHHHHHHhH
Q 038751 278 KFFLILDDVWPDDYSKWEPFHNCLMNG-LCGS-RILVTTRKETVAR--------MMESTDVISIKELSEQECWSLFKRFA 347 (915)
Q Consensus 278 ~~LlVlDdvw~~~~~~~~~l~~~l~~~-~~gs-~iivTtR~~~v~~--------~~~~~~~~~l~~L~~~~~~~lf~~~~ 347 (915)
.-+||+||+..-+...-+.+...+... ..+. .||+|++...... .+.....+++.++++++-..++.+.+
T Consensus 91 ~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~ 170 (227)
T PRK08903 91 AELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAA 170 (227)
T ss_pred CCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHH
Confidence 347899999543333333344444332 2344 4677776543221 22234689999999988777776643
Q ss_pred cCCCCCCchhHHHHHHHHHHHhcCCCchHHHHHHhHh
Q 038751 348 FSGRSPTECEQLEEIGRKIVGKCKGLPLAAKTIGSLL 384 (915)
Q Consensus 348 ~~~~~~~~~~~l~~~~~~i~~~c~G~PLai~~~~~~l 384 (915)
-..+- ... ++..+.+++.+.|.+..+..+...+
T Consensus 171 ~~~~v-~l~---~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 171 AERGL-QLA---DEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHcCC-CCC---HHHHHHHHHhccCCHHHHHHHHHHH
Confidence 22111 111 2456667888999999887765554
No 80
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.25 E-value=3.1e-05 Score=77.09 Aligned_cols=91 Identities=15% Similarity=0.140 Sum_probs=64.5
Q ss_pred cCeEEEEEeCCCCCCccChhhhHHhhhcCCCCceEEEEcCch-HHHhh-hcCcCeEeCCCCCHHHHHHHHHHhHcCCCCC
Q 038751 276 EKKFFLILDDVWPDDYSKWEPFHNCLMNGLCGSRILVTTRKE-TVARM-MESTDVISIKELSEQECWSLFKRFAFSGRSP 353 (915)
Q Consensus 276 ~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 353 (915)
+.+-++|+||+..-....++.+...+......+.+|++|++. .+... ......+++.+++.++..+.+.+. + .
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~--g-i-- 169 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ--G-I-- 169 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc--C-C--
Confidence 456689999996655556777888887766677777777654 22221 123468999999999999998886 1 1
Q ss_pred CchhHHHHHHHHHHHhcCCCchH
Q 038751 354 TECEQLEEIGRKIVGKCKGLPLA 376 (915)
Q Consensus 354 ~~~~~l~~~~~~i~~~c~G~PLa 376 (915)
. .+.+..|++.++|.|..
T Consensus 170 -~----~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 170 -S----EEAAELLLALAGGSPGA 187 (188)
T ss_pred -C----HHHHHHHHHHcCCCccc
Confidence 1 24577899999998864
No 81
>PRK09087 hypothetical protein; Validated
Probab=98.23 E-value=1.9e-05 Score=80.49 Aligned_cols=141 Identities=16% Similarity=0.189 Sum_probs=86.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHhccC
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLRELNSLLEYIHTSIKEK 277 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 277 (915)
.+.+.|+|+.|+|||+|++.+++... ..+++.. .+..+++..+ .+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~-------~~~i~~~------~~~~~~~~~~---------------------~~- 88 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSD-------ALLIHPN------EIGSDAANAA---------------------AE- 88 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcC-------CEEecHH------HcchHHHHhh---------------------hc-
Confidence 35689999999999999999887421 1233221 1111111111 11
Q ss_pred eEEEEEeCCCCCCccChhhhHHhhhc-CCCCceEEEEcCch---------HHHhhhcCcCeEeCCCCCHHHHHHHHHHhH
Q 038751 278 KFFLILDDVWPDDYSKWEPFHNCLMN-GLCGSRILVTTRKE---------TVARMMESTDVISIKELSEQECWSLFKRFA 347 (915)
Q Consensus 278 ~~LlVlDdvw~~~~~~~~~l~~~l~~-~~~gs~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 347 (915)
-+|++||+.... ..-+.+...+.. ...|..||+|++.+ ...+.+....++++++++.++-.+++.+++
T Consensus 89 -~~l~iDDi~~~~-~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~ 166 (226)
T PRK09087 89 -GPVLIEDIDAGG-FDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLF 166 (226)
T ss_pred -CeEEEECCCCCC-CCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHH
Confidence 278889995321 112334443332 23467799988742 334445567899999999999999999887
Q ss_pred cCCCCCCchhHHHHHHHHHHHhcCCCchHHHH
Q 038751 348 FSGRSPTECEQLEEIGRKIVGKCKGLPLAAKT 379 (915)
Q Consensus 348 ~~~~~~~~~~~l~~~~~~i~~~c~G~PLai~~ 379 (915)
-...-.-. +++..-|++++.|..-++..
T Consensus 167 ~~~~~~l~----~ev~~~La~~~~r~~~~l~~ 194 (226)
T PRK09087 167 ADRQLYVD----PHVVYYLVSRMERSLFAAQT 194 (226)
T ss_pred HHcCCCCC----HHHHHHHHHHhhhhHHHHHH
Confidence 54322111 35566677878877776654
No 82
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.23 E-value=3.9e-07 Score=87.75 Aligned_cols=131 Identities=19% Similarity=0.281 Sum_probs=50.2
Q ss_pred CCCCcceEEEeeeCCCCCCCccc-CccCccEEEEcCcCCCCCCCCCCCCCCcceeeccccccceEeCccccCCccccccc
Q 038751 728 PPPDIKSLEIMVFKGRTPSNWIG-SLNKLKMLTLNSFVKCEIMPPLGKLPSLEILRIWHMRSVKRVGDEFLGMEISDHIH 806 (915)
Q Consensus 728 ~~~~L~~L~l~~~~~~~~p~~~~-~l~~L~~L~L~~~~~~~~l~~l~~Lp~L~~L~L~~~~~l~~~~~~~~~~~~l~~l~ 806 (915)
.+.+++.|++.|+....+. .++ .+.+|+.|+|++| ....++.+..|++|++|+++++. ++.++..+.
T Consensus 17 n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N-~I~~l~~l~~L~~L~~L~L~~N~-I~~i~~~l~--------- 84 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNN-QITKLEGLPGLPRLKTLDLSNNR-ISSISEGLD--------- 84 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS---S--TT----TT--EEE--SS----S-CHHHH---------
T ss_pred ccccccccccccccccccc-chhhhhcCCCEEECCCC-CCccccCccChhhhhhcccCCCC-CCccccchH---------
Confidence 4557899999999887764 465 6889999999998 55567788889999999998876 655543211
Q ss_pred ccccCCCcccccCcccceeeecCcccccccccCCCCcccCcccceeecccCccccCCCc----CCCCCCCcCeEeEcCCc
Q 038751 807 IHGTSSSSSVIAFPKLQKLELTGMDELEEWDFGNDDITIMPHIKSLYITYCEKLKSLPE----LLLRSTTLESLTIFGVP 882 (915)
Q Consensus 807 l~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~lp~L~~L~l~~c~~L~~lp~----~l~~l~~L~~L~l~~c~ 882 (915)
..||+|+.|.+.+. ++..+.... .+..+|+|+.|++.++|--. -+. .+..+|+|+.||-....
T Consensus 85 ----------~~lp~L~~L~L~~N-~I~~l~~l~-~L~~l~~L~~L~L~~NPv~~-~~~YR~~vi~~lP~Lk~LD~~~V~ 151 (175)
T PF14580_consen 85 ----------KNLPNLQELYLSNN-KISDLNELE-PLSSLPKLRVLSLEGNPVCE-KKNYRLFVIYKLPSLKVLDGQDVT 151 (175)
T ss_dssp ----------HH-TT--EEE-TTS----SCCCCG-GGGG-TT--EEE-TT-GGGG-STTHHHHHHHH-TT-SEETTEETT
T ss_pred ----------HhCCcCCEEECcCC-cCCChHHhH-HHHcCCCcceeeccCCcccc-hhhHHHHHHHHcChhheeCCEEcc
Confidence 25889999999875 344443211 25578999999999987533 332 35568888888876554
Q ss_pred c
Q 038751 883 I 883 (915)
Q Consensus 883 ~ 883 (915)
.
T Consensus 152 ~ 152 (175)
T PF14580_consen 152 E 152 (175)
T ss_dssp S
T ss_pred H
Confidence 3
No 83
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.21 E-value=2.2e-05 Score=87.63 Aligned_cols=199 Identities=14% Similarity=0.155 Sum_probs=111.6
Q ss_pred CccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEE-eCCCCCHHHHHHHH
Q 038751 171 SDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVC-VSDPFDEFRIAKAI 249 (915)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~-vs~~~~~~~~~~~i 249 (915)
.+++|.+..++.+..++... .-.+.+.++|+.|+||||+|+.+.+...-........|.. +...+..-...+.+
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~-----~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~ 90 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMG-----RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDF 90 (397)
T ss_pred hhccChHHHHHHHHHHHHhC-----CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHH
Confidence 46899988888888888542 1245688999999999999988876322111111111110 01111111222222
Q ss_pred HHHhhCC-----CCCcccHHHHHHHHHHH----hccCeEEEEEeCCCCCCccChhhhHHhhhcCCCCceEEEEc-CchHH
Q 038751 250 IEGLEGS-----LPNLRELNSLLEYIHTS----IKEKKFFLILDDVWPDDYSKWEPFHNCLMNGLCGSRILVTT-RKETV 319 (915)
Q Consensus 250 ~~~l~~~-----~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTt-R~~~v 319 (915)
......+ .......+++.+..... ..+++-++|+|++..-....++.+...+......+.+|++| +...+
T Consensus 91 ~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl 170 (397)
T PRK14955 91 DAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKI 170 (397)
T ss_pred hcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHh
Confidence 2110000 00111133333222111 13456688999996655557788888887766677766655 33333
Q ss_pred Hhhh-cCcCeEeCCCCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCCCchHHH
Q 038751 320 ARMM-ESTDVISIKELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKGLPLAAK 378 (915)
Q Consensus 320 ~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~PLai~ 378 (915)
...+ .....+++.++++++....+...+-..+.... .+.+..|++.++|.+--+.
T Consensus 171 ~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~i~----~~al~~l~~~s~g~lr~a~ 226 (397)
T PRK14955 171 PATIASRCQRFNFKRIPLEEIQQQLQGICEAEGISVD----ADALQLIGRKAQGSMRDAQ 226 (397)
T ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHH
Confidence 3222 22457899999999998888776532221122 3456778899999775443
No 84
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.21 E-value=4.3e-05 Score=81.90 Aligned_cols=215 Identities=15% Similarity=0.142 Sum_probs=133.9
Q ss_pred cccCccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHH
Q 038751 168 INVSDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAK 247 (915)
Q Consensus 168 ~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 247 (915)
..+..++||+.|+..+..++...-. ....+-+.|.|.+|.|||.+...++.+......=.++++++...-.....++.
T Consensus 147 ~~p~~l~gRe~e~~~v~~F~~~hle--~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~ 224 (529)
T KOG2227|consen 147 APPGTLKGRELEMDIVREFFSLHLE--LNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFK 224 (529)
T ss_pred CCCCCccchHHHHHHHHHHHHhhhh--cccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHH
Confidence 3456799999999999999875432 33567799999999999999999998643222223456776665566778888
Q ss_pred HHHHHhhCCCCCcccHHHHHHHHHHHhccC--eEEEEEeCCCCCCccChhhhHHhhhc-CCCCceEEEEcCch--HHH--
Q 038751 248 AIIEGLEGSLPNLRELNSLLEYIHTSIKEK--KFFLILDDVWPDDYSKWEPFHNCLMN-GLCGSRILVTTRKE--TVA-- 320 (915)
Q Consensus 248 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k--~~LlVlDdvw~~~~~~~~~l~~~l~~-~~~gs~iivTtR~~--~v~-- 320 (915)
.|...+...........+..+.+.++.++. .+|+|+|.+..-....-..+...|.+ .-.++++|+.---. +..
T Consensus 225 kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR 304 (529)
T KOG2227|consen 225 KIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDR 304 (529)
T ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHH
Confidence 888877322111112244556666666433 68999998843211222233333333 23566665532211 111
Q ss_pred ---hh---h-cCcCeEeCCCCCHHHHHHHHHHhHcCCCCC-CchhHHHHHHHHHHHhcCCCchHHHHHHhHh
Q 038751 321 ---RM---M-ESTDVISIKELSEQECWSLFKRFAFSGRSP-TECEQLEEIGRKIVGKCKGLPLAAKTIGSLL 384 (915)
Q Consensus 321 ---~~---~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~-~~~~~l~~~~~~i~~~c~G~PLai~~~~~~l 384 (915)
+. . .....+..+|.+.++..++|..+.-..... ..+..++-.|++++...|.+--|+.+.-+.+
T Consensus 305 ~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~ai 376 (529)
T KOG2227|consen 305 FLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRAI 376 (529)
T ss_pred HhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 11 1 124578899999999999999987543322 2334666666776666677777776665444
No 85
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.20 E-value=2.8e-06 Score=90.70 Aligned_cols=101 Identities=15% Similarity=0.043 Sum_probs=66.4
Q ss_pred HHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCC--CHHHHHHHHHHHhhCCCC
Q 038751 181 NILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPF--DEFRIAKAIIEGLEGSLP 258 (915)
Q Consensus 181 ~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~~~~~i~~~l~~~~~ 258 (915)
-++++.+..-. .-+...|+|++|+||||||+.+|++.... +|+.++||.+.++. ++.++++.|...+-....
T Consensus 157 ~rvID~l~PIG-----kGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~ 230 (416)
T PRK09376 157 TRIIDLIAPIG-----KGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTF 230 (416)
T ss_pred eeeeeeecccc-----cCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECC
Confidence 35566665432 23567899999999999999999975544 89999999999987 777888887632221222
Q ss_pred CcccHH------HHHHHHHHH-hccCeEEEEEeCCC
Q 038751 259 NLRELN------SLLEYIHTS-IKEKKFFLILDDVW 287 (915)
Q Consensus 259 ~~~~~~------~~~~~l~~~-l~~k~~LlVlDdvw 287 (915)
+..... ...+.-... -.+++.+|++|++.
T Consensus 231 d~~~~~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsIt 266 (416)
T PRK09376 231 DEPAERHVQVAEMVIEKAKRLVEHGKDVVILLDSIT 266 (416)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEChH
Confidence 211111 111111111 25799999999994
No 86
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.20 E-value=2e-07 Score=96.72 Aligned_cols=83 Identities=14% Similarity=0.199 Sum_probs=58.8
Q ss_pred cCCCCCcceEEEeeeCCCCC-CCcccCccCccEEEEcCcCCCCCCC--CCCCCCCcceeeccccccceEe-CccccCCcc
Q 038751 726 LRPPPDIKSLEIMVFKGRTP-SNWIGSLNKLKMLTLNSFVKCEIMP--PLGKLPSLEILRIWHMRSVKRV-GDEFLGMEI 801 (915)
Q Consensus 726 l~~~~~L~~L~l~~~~~~~~-p~~~~~l~~L~~L~L~~~~~~~~l~--~l~~Lp~L~~L~L~~~~~l~~~-~~~~~~~~~ 801 (915)
+..+++|++|++++|..+.+ +.|+..+..|+.|.|..|. ++.+. .+..+..|+.|+|.++. ++.+ |..|.....
T Consensus 270 f~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~-l~~v~~~~f~~ls~L~tL~L~~N~-it~~~~~aF~~~~~ 347 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNK-LEFVSSGMFQGLSGLKTLSLYDNQ-ITTVAPGAFQTLFS 347 (498)
T ss_pred HhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcch-HHHHHHHhhhccccceeeeecCCe-eEEEecccccccce
Confidence 45678999999999988776 7788888999999998774 33222 25678889999999887 5555 444444455
Q ss_pred ccccccccc
Q 038751 802 SDHIHIHGT 810 (915)
Q Consensus 802 l~~l~l~~~ 810 (915)
+..+.+-+|
T Consensus 348 l~~l~l~~N 356 (498)
T KOG4237|consen 348 LSTLNLLSN 356 (498)
T ss_pred eeeeehccC
Confidence 555555443
No 87
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.17 E-value=3.7e-05 Score=88.45 Aligned_cols=184 Identities=15% Similarity=0.170 Sum_probs=110.4
Q ss_pred CccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhccccccc-------------------CCCeE
Q 038751 171 SDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIE-------------------NFDKR 231 (915)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~ 231 (915)
.+++|-+..++.+..++.... -.+.+.++|+.|+||||+|+.+.+...-.. .|...
T Consensus 16 ~divGq~~v~~~L~~~i~~~~-----~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~ 90 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQR-----LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDL 90 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 468999999999988886432 235678999999999999998876321110 11111
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHH----hccCeEEEEEeCCCCCCccChhhhHHhhhcCCCC
Q 038751 232 IWVCVSDPFDEFRIAKAIIEGLEGSLPNLRELNSLLEYIHTS----IKEKKFFLILDDVWPDDYSKWEPFHNCLMNGLCG 307 (915)
Q Consensus 232 ~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~g 307 (915)
+++..+.. ...+++.+.+... ..+++-++|+|++........+.+...+......
T Consensus 91 ~ei~~~~~---------------------~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~ 149 (527)
T PRK14969 91 IEVDAASN---------------------TQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEH 149 (527)
T ss_pred eEeecccc---------------------CCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCC
Confidence 22211111 1122222222111 1356679999999765555677777777776666
Q ss_pred ceEEEEcCch-HHHhh-hcCcCeEeCCCCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCCCch-HHHHHHhHh
Q 038751 308 SRILVTTRKE-TVARM-MESTDVISIKELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKGLPL-AAKTIGSLL 384 (915)
Q Consensus 308 s~iivTtR~~-~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~PL-ai~~~~~~l 384 (915)
+.+|++|.+. .+... ......+++.+++.++....+.+.+...+-... .+....|++.++|.+. |+..+-.++
T Consensus 150 ~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~~~----~~al~~la~~s~Gslr~al~lldqai 225 (527)
T PRK14969 150 VKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPFD----ATALQLLARAAAGSMRDALSLLDQAI 225 (527)
T ss_pred EEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 7777666443 22211 222468999999999999888776533221112 2345668888999775 444443333
No 88
>PRK05642 DNA replication initiation factor; Validated
Probab=98.17 E-value=4.9e-05 Score=78.20 Aligned_cols=153 Identities=16% Similarity=0.207 Sum_probs=93.0
Q ss_pred EEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHhccCe
Q 038751 199 QIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLRELNSLLEYIHTSIKEKK 278 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 278 (915)
..+.|+|..|+|||+|++.+++.. ...-..++|++..+ +... .. .+.+.+.+-.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~--~~~~~~v~y~~~~~------~~~~--------------~~----~~~~~~~~~d 99 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRF--EQRGEPAVYLPLAE------LLDR--------------GP----ELLDNLEQYE 99 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH--HhCCCcEEEeeHHH------HHhh--------------hH----HHHHhhhhCC
Confidence 568999999999999999998742 22223466776542 1111 01 1222232222
Q ss_pred EEEEEeCCCCC-CccChhh-hHHhhhc-CCCCceEEEEcCchH---------HHhhhcCcCeEeCCCCCHHHHHHHHHHh
Q 038751 279 FFLILDDVWPD-DYSKWEP-FHNCLMN-GLCGSRILVTTRKET---------VARMMESTDVISIKELSEQECWSLFKRF 346 (915)
Q Consensus 279 ~LlVlDdvw~~-~~~~~~~-l~~~l~~-~~~gs~iivTtR~~~---------v~~~~~~~~~~~l~~L~~~~~~~lf~~~ 346 (915)
+||+||+... ....|.. +...+.. ...|..||+|++... ..+.+....+++++++++++-.++++.+
T Consensus 100 -~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~k 178 (234)
T PRK05642 100 -LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLR 178 (234)
T ss_pred -EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHH
Confidence 6789999532 1234544 4444432 234678899888533 1222334578999999999999999876
Q ss_pred HcCCCCCCchhHHHHHHHHHHHhcCCCchHHHHHHh
Q 038751 347 AFSGRSPTECEQLEEIGRKIVGKCKGLPLAAKTIGS 382 (915)
Q Consensus 347 ~~~~~~~~~~~~l~~~~~~i~~~c~G~PLai~~~~~ 382 (915)
+....- ..+ +++..-|++++.|..-.+..+-.
T Consensus 179 a~~~~~-~l~---~ev~~~L~~~~~~d~r~l~~~l~ 210 (234)
T PRK05642 179 ASRRGL-HLT---DEVGHFILTRGTRSMSALFDLLE 210 (234)
T ss_pred HHHcCC-CCC---HHHHHHHHHhcCCCHHHHHHHHH
Confidence 644321 111 36677788888887766554433
No 89
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.14 E-value=1.2e-05 Score=87.87 Aligned_cols=120 Identities=16% Similarity=0.159 Sum_probs=77.7
Q ss_pred CccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 038751 171 SDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAII 250 (915)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 250 (915)
.++++.+...+.+...|... +.|.++|++|+|||++|+.+++.......|+.+.||.+++.++..++...+.
T Consensus 175 ~d~~i~e~~le~l~~~L~~~--------~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~r 246 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK--------KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYR 246 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC--------CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccC
Confidence 45788899999999999743 4588899999999999999988654455778889999999888777654331
Q ss_pred HHhhCCCCCcccH-HHHHHHHHHHhc--cCeEEEEEeCCCCCCccC-hhhhHHhhh
Q 038751 251 EGLEGSLPNLREL-NSLLEYIHTSIK--EKKFFLILDDVWPDDYSK-WEPFHNCLM 302 (915)
Q Consensus 251 ~~l~~~~~~~~~~-~~~~~~l~~~l~--~k~~LlVlDdvw~~~~~~-~~~l~~~l~ 302 (915)
- ...+..-. ....+.+.+... ++++++|+|++-..+.+. +..+...+.
T Consensus 247 P----~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~lLE 298 (459)
T PRK11331 247 P----NGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLME 298 (459)
T ss_pred C----CCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhhhcc
Confidence 1 00011101 112222333222 468999999995444222 344444333
No 90
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.11 E-value=9.8e-05 Score=85.12 Aligned_cols=199 Identities=14% Similarity=0.146 Sum_probs=115.9
Q ss_pred CccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 038751 171 SDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAII 250 (915)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 250 (915)
.+++|.+..++.|..++... .-.+.+.++|+.|+||||+|+.+.+...-....+ + ..++.-...+.|.
T Consensus 13 ~eivGq~~i~~~L~~~i~~~-----r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~---~----~pCg~C~~C~~i~ 80 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAG-----RINHAYLFSGPRGCGKTSSARILARSLNCAQGPT---A----TPCGVCESCVALA 80 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCC---C----CcccccHHHHHhh
Confidence 46899999999999998643 1345678999999999999998876321111000 0 0111111111111
Q ss_pred HH---------hhC-CCCCcccHHHHHHHHHHH-hccCeEEEEEeCCCCCCccChhhhHHhhhcCCCCceEEEEcCc-hH
Q 038751 251 EG---------LEG-SLPNLRELNSLLEYIHTS-IKEKKFFLILDDVWPDDYSKWEPFHNCLMNGLCGSRILVTTRK-ET 318 (915)
Q Consensus 251 ~~---------l~~-~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~-~~ 318 (915)
.. +.. ...+..+..++.+.+... ..+++-++|+|+++.-.....+.|...+........+|++|.. ..
T Consensus 81 ~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~k 160 (584)
T PRK14952 81 PNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEK 160 (584)
T ss_pred cccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHh
Confidence 10 000 001112222222222211 1345668999999776667788888888876667776665543 33
Q ss_pred HHhh-hcCcCeEeCCCCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCCCch-HHHHHHhHhh
Q 038751 319 VARM-MESTDVISIKELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKGLPL-AAKTIGSLLR 385 (915)
Q Consensus 319 v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~PL-ai~~~~~~l~ 385 (915)
+... ......+++.+++.++..+.+.+.+...+...+ .+....|++.++|.+- |+..+-.++.
T Consensus 161 ll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~----~~al~~Ia~~s~GdlR~aln~Ldql~~ 225 (584)
T PRK14952 161 VLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVD----DAVYPLVIRAGGGSPRDTLSVLDQLLA 225 (584)
T ss_pred hHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 3332 233678999999999998888776543322122 2345668888999774 5555555443
No 91
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.11 E-value=2.5e-05 Score=86.50 Aligned_cols=182 Identities=14% Similarity=0.136 Sum_probs=100.5
Q ss_pred cccCccccchHHHHHHHHHHhccccc-------ccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCC
Q 038751 168 INVSDVRGRDEEKNILKRKLLCESNE-------ERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPF 240 (915)
Q Consensus 168 ~~~~~~~Gr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~ 240 (915)
....++.|+++++++|.+.+...-.. +-...+-+.++|++|+|||++|+.+++. ....| +.+..
T Consensus 119 ~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~--l~~~~-----~~v~~-- 189 (364)
T TIGR01242 119 VSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNATF-----IRVVG-- 189 (364)
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--CCCCE-----Eecch--
Confidence 34457899999999999887532110 1123456899999999999999999984 33333 22211
Q ss_pred CHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHhccCeEEEEEeCCCCC-----------CccChhhhHHhhh---c--C
Q 038751 241 DEFRIAKAIIEGLEGSLPNLRELNSLLEYIHTSIKEKKFFLILDDVWPD-----------DYSKWEPFHNCLM---N--G 304 (915)
Q Consensus 241 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~-----------~~~~~~~l~~~l~---~--~ 304 (915)
..+. ....+ .....+...+...-...+.+|++||++.- +......+...+. . .
T Consensus 190 --~~l~----~~~~g-----~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~ 258 (364)
T TIGR01242 190 --SELV----RKYIG-----EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDP 258 (364)
T ss_pred --HHHH----HHhhh-----HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCC
Confidence 1111 11100 00111112222222346789999998531 0111222333332 1 1
Q ss_pred CCCceEEEEcCchHHH-----hhhcCcCeEeCCCCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCCCc
Q 038751 305 LCGSRILVTTRKETVA-----RMMESTDVISIKELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKGLP 374 (915)
Q Consensus 305 ~~gs~iivTtR~~~v~-----~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~P 374 (915)
..+.+||.||...... +.......+.+...+.++..++|..++....-. ..-. ...+++.+.|..
T Consensus 259 ~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~-~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 259 RGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLA-EDVD----LEAIAKMTEGAS 328 (364)
T ss_pred CCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCC-ccCC----HHHHHHHcCCCC
Confidence 3466788888754321 111224578999999999999999877543211 1112 245666777754
No 92
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.10 E-value=6.8e-05 Score=86.90 Aligned_cols=197 Identities=15% Similarity=0.153 Sum_probs=113.7
Q ss_pred CccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCe--EEEEEeCCCCCHHHHHHH
Q 038751 171 SDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDK--RIWVCVSDPFDEFRIAKA 248 (915)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~--~~wv~vs~~~~~~~~~~~ 248 (915)
.+++|.+..++.+.+.+.... -...+.++|+.|+||||+|+.+.+...-...... ..+ ..+..-.-.+.
T Consensus 24 ~dliGq~~~v~~L~~~~~~gr-----i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~----~~cg~c~~C~~ 94 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGR-----IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTI----DLCGVGEHCQA 94 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCcc----ccCcccHHHHH
Confidence 478999999999999886432 3457889999999999999998773211111000 000 00111111122
Q ss_pred HHHHhhCC-----CCCcccHHHHH---HHHHH-HhccCeEEEEEeCCCCCCccChhhhHHhhhcCCCCceEEEEcC-chH
Q 038751 249 IIEGLEGS-----LPNLRELNSLL---EYIHT-SIKEKKFFLILDDVWPDDYSKWEPFHNCLMNGLCGSRILVTTR-KET 318 (915)
Q Consensus 249 i~~~l~~~-----~~~~~~~~~~~---~~l~~-~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR-~~~ 318 (915)
|...-..+ .......+++. +.+.. -..+++-++|+|++..-+....+.+...+.....++++|++|. ...
T Consensus 95 i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~k 174 (598)
T PRK09111 95 IMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRK 174 (598)
T ss_pred HhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhh
Confidence 22111000 00111223322 22211 1124556899999966555567778877777666777766553 333
Q ss_pred HHhh-hcCcCeEeCCCCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCCCchHHHHH
Q 038751 319 VARM-MESTDVISIKELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKGLPLAAKTI 380 (915)
Q Consensus 319 v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~PLai~~~ 380 (915)
+... ......+++.+++.++....+.+.+-..+.... .+....|++.++|.+.-+...
T Consensus 175 ll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~----~eAl~lIa~~a~Gdlr~al~~ 233 (598)
T PRK09111 175 VPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVE----DEALALIARAAEGSVRDGLSL 233 (598)
T ss_pred hhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 3322 223568999999999999999887643322222 244667889999988765443
No 93
>PF14516 AAA_35: AAA-like domain
Probab=98.08 E-value=0.00055 Score=74.39 Aligned_cols=202 Identities=13% Similarity=0.129 Sum_probs=121.4
Q ss_pred ccCccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCC-----CCHH
Q 038751 169 NVSDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDP-----FDEF 243 (915)
Q Consensus 169 ~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-----~~~~ 243 (915)
+.+-+|.|...-+++.+.+..+ -..+.|.|+-.+|||+|...+.+..+. ..+ ..+++++..- .+..
T Consensus 9 ~~~~Yi~R~~~e~~~~~~i~~~-------G~~~~I~apRq~GKTSll~~l~~~l~~-~~~-~~v~id~~~~~~~~~~~~~ 79 (331)
T PF14516_consen 9 DSPFYIERPPAEQECYQEIVQP-------GSYIRIKAPRQMGKTSLLLRLLERLQQ-QGY-RCVYIDLQQLGSAIFSDLE 79 (331)
T ss_pred CCCcccCchHHHHHHHHHHhcC-------CCEEEEECcccCCHHHHHHHHHHHHHH-CCC-EEEEEEeecCCCcccCCHH
Confidence 4456788986777777777542 257899999999999999888874332 233 4567776542 3456
Q ss_pred HHHHHHHHHhhCCCCC-----------cccHHHHHHHHHHHh---ccCeEEEEEeCCCCCC--ccChhhhHHhhhc----
Q 038751 244 RIAKAIIEGLEGSLPN-----------LRELNSLLEYIHTSI---KEKKFFLILDDVWPDD--YSKWEPFHNCLMN---- 303 (915)
Q Consensus 244 ~~~~~i~~~l~~~~~~-----------~~~~~~~~~~l~~~l---~~k~~LlVlDdvw~~~--~~~~~~l~~~l~~---- 303 (915)
++++.+...+.....- ..........+.+++ .+++.+|++|++..-- ....+.+...+..
T Consensus 80 ~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~ 159 (331)
T PF14516_consen 80 QFLRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQ 159 (331)
T ss_pred HHHHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHh
Confidence 6666666655432211 112223334444433 2689999999985311 1122334443332
Q ss_pred CC----CCceEEEEcCchH---HHhh----hcCcCeEeCCCCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCC
Q 038751 304 GL----CGSRILVTTRKET---VARM----MESTDVISIKELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKG 372 (915)
Q Consensus 304 ~~----~gs~iivTtR~~~---v~~~----~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G 372 (915)
.. -.+-.++...+.+ .... ......++|++++.+|...|+.++... ... ...++|...+||
T Consensus 160 ~~~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~----~~~----~~~~~l~~~tgG 231 (331)
T PF14516_consen 160 RKNNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE----FSQ----EQLEQLMDWTGG 231 (331)
T ss_pred cccCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc----CCH----HHHHHHHHHHCC
Confidence 11 0111122222111 1111 122458999999999999999876422 111 127789999999
Q ss_pred CchHHHHHHhHhhcC
Q 038751 373 LPLAAKTIGSLLRFK 387 (915)
Q Consensus 373 ~PLai~~~~~~l~~~ 387 (915)
+|..+..++..+..+
T Consensus 232 hP~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 232 HPYLVQKACYLLVEE 246 (331)
T ss_pred CHHHHHHHHHHHHHc
Confidence 999999999999753
No 94
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.08 E-value=8.8e-05 Score=85.16 Aligned_cols=198 Identities=15% Similarity=0.196 Sum_probs=113.4
Q ss_pred CccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 038751 171 SDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAII 250 (915)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 250 (915)
.+++|-+..++.|.+.+... .-...+.++|+.|+||||+|+.+.+...-....+ ...++.-...+.|.
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~-----ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~-------~~pCg~C~sC~~i~ 83 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQEN-----RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPT-------GEPCNTCEQCRKVT 83 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHhccccCCCC-------CCCCcccHHHHHHh
Confidence 46889888888888877542 1246788999999999999998877422111000 00111112222221
Q ss_pred HHhhCC--------CCCcccHHHHHHHHHH-HhccCeEEEEEeCCCCCCccChhhhHHhhhcCCCCceEEEEcCc-hHHH
Q 038751 251 EGLEGS--------LPNLRELNSLLEYIHT-SIKEKKFFLILDDVWPDDYSKWEPFHNCLMNGLCGSRILVTTRK-ETVA 320 (915)
Q Consensus 251 ~~l~~~--------~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~-~~v~ 320 (915)
.....+ .....+...+.+.+.. -..+++-++|+|++..-....++.|...+........+|++|.. ..+.
T Consensus 84 ~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll 163 (624)
T PRK14959 84 QGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFP 163 (624)
T ss_pred cCCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhh
Confidence 110000 0001111122111111 12356679999999765556677787777665455666666654 3333
Q ss_pred hh-hcCcCeEeCCCCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCCCc-hHHHHHHhHh
Q 038751 321 RM-MESTDVISIKELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKGLP-LAAKTIGSLL 384 (915)
Q Consensus 321 ~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~P-Lai~~~~~~l 384 (915)
.. ......+++.+++.++....+...+........ .+.+..|++.++|.+ .|+..+..++
T Consensus 164 ~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~id----~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 164 VTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDYD----PAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred HHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 22 223468899999999999988876643322122 244667888899854 6777766554
No 95
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.08 E-value=0.00013 Score=73.30 Aligned_cols=182 Identities=19% Similarity=0.203 Sum_probs=106.2
Q ss_pred CccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 038751 171 SDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAII 250 (915)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 250 (915)
.+|+|.++-++++.=++..... ..+.+--|.++|++|.||||||.-+++. ...++.. +.+....
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~-r~e~lDHvLl~GPPGlGKTTLA~IIA~E--mgvn~k~----tsGp~le--------- 89 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKK-RGEALDHVLLFGPPGLGKTTLAHIIANE--LGVNLKI----TSGPALE--------- 89 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHh-cCCCcCeEEeeCCCCCcHHHHHHHHHHH--hcCCeEe----ccccccc---------
Confidence 4799999888888777765443 4556788999999999999999999984 3333321 1111111
Q ss_pred HHhhCCCCCcccHHHHHHHHHHHhccCeEEEEEeCCCCCCccChhhhHHhhhc--------CCCCceE-----------E
Q 038751 251 EGLEGSLPNLRELNSLLEYIHTSIKEKKFFLILDDVWPDDYSKWEPFHNCLMN--------GLCGSRI-----------L 311 (915)
Q Consensus 251 ~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~--------~~~gs~i-----------i 311 (915)
....+...|.. | ...=++++|.++.-.+..-+-+..++.+ .++++|. =
T Consensus 90 -----------K~gDlaaiLt~-L-e~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIG 156 (332)
T COG2255 90 -----------KPGDLAAILTN-L-EEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIG 156 (332)
T ss_pred -----------ChhhHHHHHhc-C-CcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEee
Confidence 11111111111 1 1223556677654433222222222221 1223333 2
Q ss_pred EEcCchHHHhhhcC--cCeEeCCCCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCCCchHHHHHHhHhh
Q 038751 312 VTTRKETVARMMES--TDVISIKELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKGLPLAAKTIGSLLR 385 (915)
Q Consensus 312 vTtR~~~v~~~~~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~PLai~~~~~~l~ 385 (915)
-|||.-.+...+.. .-+.+++.-+.+|-.++..+.+..-.-... ++-+.+|+++..|-|.-+.-+-+..+
T Consensus 157 ATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~----~~~a~eIA~rSRGTPRIAnRLLrRVR 228 (332)
T COG2255 157 ATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEID----EEAALEIARRSRGTPRIANRLLRRVR 228 (332)
T ss_pred eccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCC----hHHHHHHHHhccCCcHHHHHHHHHHH
Confidence 38886544443322 457899999999999999887743322222 34577899999999987655544443
No 96
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.08 E-value=9.4e-05 Score=83.46 Aligned_cols=169 Identities=20% Similarity=0.124 Sum_probs=101.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHhccC
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLRELNSLLEYIHTSIKEK 277 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 277 (915)
..-+.|+|..|+|||+|++.+.+.......-..+++++ ..++...+...+.... + ....+.+.+. .
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~------~~~f~~~~~~~l~~~~------~-~~~~~~~~~~-~ 206 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS------GDEFARKAVDILQKTH------K-EIEQFKNEIC-Q 206 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE------HHHHHHHHHHHHHHhh------h-HHHHHHHHhc-c
Confidence 34588999999999999999988321111112334443 3456677766664310 1 1223333333 3
Q ss_pred eEEEEEeCCCCCCc-cCh-hhhHHhhhcC-CCCceEEEEcCchH---------HHhhhcCcCeEeCCCCCHHHHHHHHHH
Q 038751 278 KFFLILDDVWPDDY-SKW-EPFHNCLMNG-LCGSRILVTTRKET---------VARMMESTDVISIKELSEQECWSLFKR 345 (915)
Q Consensus 278 ~~LlVlDdvw~~~~-~~~-~~l~~~l~~~-~~gs~iivTtR~~~---------v~~~~~~~~~~~l~~L~~~~~~~lf~~ 345 (915)
.-+||+||+..... ..+ +.+...+... ..|..||+|+.... +...+...-++.+++++.++-.+++.+
T Consensus 207 ~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~ 286 (450)
T PRK14087 207 NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKK 286 (450)
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHH
Confidence 34888999954321 122 3344444332 34557888876432 223344466889999999999999998
Q ss_pred hHcCCCCCCchhHHHHHHHHHHHhcCCCchHHHHHHh
Q 038751 346 FAFSGRSPTECEQLEEIGRKIVGKCKGLPLAAKTIGS 382 (915)
Q Consensus 346 ~~~~~~~~~~~~~l~~~~~~i~~~c~G~PLai~~~~~ 382 (915)
++-..+-. ..--+++..-|++.++|.|-.+..+..
T Consensus 287 ~~~~~gl~--~~l~~evl~~Ia~~~~gd~R~L~gaL~ 321 (450)
T PRK14087 287 EIKNQNIK--QEVTEEAINFISNYYSDDVRKIKGSVS 321 (450)
T ss_pred HHHhcCCC--CCCCHHHHHHHHHccCCCHHHHHHHHH
Confidence 87432210 012246678899999999988765543
No 97
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.08 E-value=6.6e-07 Score=89.35 Aligned_cols=109 Identities=22% Similarity=0.311 Sum_probs=51.3
Q ss_pred hcCCCCCcceEEEeeeCCCCCCCcccCccCccEEEEcCcCCCCCCCCCCCCCCcceeeccccccceEeCccccCCccccc
Q 038751 725 ALRPPPDIKSLEIMVFKGRTPSNWIGSLNKLKMLTLNSFVKCEIMPPLGKLPSLEILRIWHMRSVKRVGDEFLGMEISDH 804 (915)
Q Consensus 725 ~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~Lp~L~~L~L~~~~~l~~~~~~~~~~~~l~~ 804 (915)
+..-.|.++.|+++.|.....-+ +..+++|+.|+|++|...+.-.+-..|-|.+.|.|.++. ++.++
T Consensus 302 SvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~-iE~LS----------- 368 (490)
T KOG1259|consen 302 SVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNK-IETLS----------- 368 (490)
T ss_pred hhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhh-Hhhhh-----------
Confidence 33444555555555554433332 445555555555555432222222334445555554432 22221
Q ss_pred ccccccCCCcccccCcccceeeecCcccccccccCCCCcccCcccceeecccCc
Q 038751 805 IHIHGTSSSSSVIAFPKLQKLELTGMDELEEWDFGNDDITIMPHIKSLYITYCE 858 (915)
Q Consensus 805 l~l~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~lp~L~~L~l~~c~ 858 (915)
+++.+=+|..|++++. +++...... +++++|+|+.|.+.++|
T Consensus 369 ----------GL~KLYSLvnLDl~~N-~Ie~ldeV~-~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 369 ----------GLRKLYSLVNLDLSSN-QIEELDEVN-HIGNLPCLETLRLTGNP 410 (490)
T ss_pred ----------hhHhhhhheecccccc-chhhHHHhc-ccccccHHHHHhhcCCC
Confidence 1223445555555553 222222111 25677777777777776
No 98
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.07 E-value=9.8e-05 Score=75.01 Aligned_cols=184 Identities=13% Similarity=0.156 Sum_probs=100.9
Q ss_pred ccc-hHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 038751 174 RGR-DEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEG 252 (915)
Q Consensus 174 ~Gr-~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 252 (915)
+|- .+..-.....+.... +.....+.|+|..|+|||.|.+++++.......=..+++++ ..++...+...
T Consensus 12 ~g~~N~~a~~~~~~ia~~~---~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~------~~~f~~~~~~~ 82 (219)
T PF00308_consen 12 VGESNELAYAAAKAIAENP---GERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS------AEEFIREFADA 82 (219)
T ss_dssp -TTTTHHHHHHHHHHHHST---TTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE------HHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHhcC---CCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec------HHHHHHHHHHH
Confidence 464 233334444444332 22344578999999999999999998432111112345653 34566666666
Q ss_pred hhCCCCCcccHHHHHHHHHHHhccCeEEEEEeCCCCCC-ccChhh-hHHhhhc-CCCCceEEEEcCch---------HHH
Q 038751 253 LEGSLPNLRELNSLLEYIHTSIKEKKFFLILDDVWPDD-YSKWEP-FHNCLMN-GLCGSRILVTTRKE---------TVA 320 (915)
Q Consensus 253 l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~-~~~~~~-l~~~l~~-~~~gs~iivTtR~~---------~v~ 320 (915)
+... ..+ .+...+.+ -=+|++||++.-. ...|.. +...+.. ...|-+||+|++.. ...
T Consensus 83 ~~~~-----~~~----~~~~~~~~-~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~ 152 (219)
T PF00308_consen 83 LRDG-----EIE----EFKDRLRS-ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLR 152 (219)
T ss_dssp HHTT-----SHH----HHHHHHCT-SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHH
T ss_pred HHcc-----cch----hhhhhhhc-CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhh
Confidence 5431 122 23333432 3388999995422 122332 3333332 13567899999653 233
Q ss_pred hhhcCcCeEeCCCCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCCCchHHHHH
Q 038751 321 RMMESTDVISIKELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKGLPLAAKTI 380 (915)
Q Consensus 321 ~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~PLai~~~ 380 (915)
+.+...-+++++++++++-..++.+++...+-. --++++.-|++.+.+..-.+..+
T Consensus 153 SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~----l~~~v~~~l~~~~~~~~r~L~~~ 208 (219)
T PF00308_consen 153 SRLSWGLVVELQPPDDEDRRRILQKKAKERGIE----LPEEVIEYLARRFRRDVRELEGA 208 (219)
T ss_dssp HHHHCSEEEEE----HHHHHHHHHHHHHHTT------S-HHHHHHHHHHTTSSHHHHHHH
T ss_pred hhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCC----CcHHHHHHHHHhhcCCHHHHHHH
Confidence 344556789999999999999999887543322 12355666777777665555443
No 99
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.06 E-value=0.00011 Score=85.33 Aligned_cols=203 Identities=14% Similarity=0.177 Sum_probs=112.9
Q ss_pred CccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEE-eCCCCCHHHHHHHH
Q 038751 171 SDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVC-VSDPFDEFRIAKAI 249 (915)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~-vs~~~~~~~~~~~i 249 (915)
.+++|.+..++.+.+.+... .-...+.++|+.|+||||+|+.+.+...-...++.-.|-. +...+..-...+.+
T Consensus 16 ~eivGQe~i~~~L~~~i~~~-----ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~ 90 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMD-----RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDF 90 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHH
Confidence 46899998888888888543 1345688999999999999988876321111111001110 00111111222222
Q ss_pred HHHhhCC-----CCCcccHHHHHHHHHHH----hccCeEEEEEeCCCCCCccChhhhHHhhhcCCCCceEEEEcC-chHH
Q 038751 250 IEGLEGS-----LPNLRELNSLLEYIHTS----IKEKKFFLILDDVWPDDYSKWEPFHNCLMNGLCGSRILVTTR-KETV 319 (915)
Q Consensus 250 ~~~l~~~-----~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR-~~~v 319 (915)
...-..+ .......+++.+.+... ..+.+-++|+|+++.......+.|...+......+.+|++|. ...+
T Consensus 91 ~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kL 170 (620)
T PRK14954 91 DAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKI 170 (620)
T ss_pred hccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhh
Confidence 1110000 00111133333322222 234556889999966555567778887777656666665553 3333
Q ss_pred Hhh-hcCcCeEeCCCCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCCCch-HHHHHHh
Q 038751 320 ARM-MESTDVISIKELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKGLPL-AAKTIGS 382 (915)
Q Consensus 320 ~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~PL-ai~~~~~ 382 (915)
... ......+++.+++.++....+.+.+...+.... .+.+..|++.++|..- |+..+-.
T Consensus 171 l~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I~----~eal~~La~~s~Gdlr~al~eLeK 231 (620)
T PRK14954 171 PATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQID----ADALQLIARKAQGSMRDAQSILDQ 231 (620)
T ss_pred hHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHhCCCHHHHHHHHHH
Confidence 322 234678999999999988888775533221112 2456778899999554 4444443
No 100
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.04 E-value=0.00018 Score=84.03 Aligned_cols=194 Identities=17% Similarity=0.186 Sum_probs=109.7
Q ss_pred CccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccC---C-CeEEEE-EeCCCCCHHHH
Q 038751 171 SDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIEN---F-DKRIWV-CVSDPFDEFRI 245 (915)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~---F-~~~~wv-~vs~~~~~~~~ 245 (915)
.+++|.+..++.+...+... .-.+.+.++|+.|+||||+|+.++...--... + .|.... +....++..
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~-----rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvi-- 90 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSN-----KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDII-- 90 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEE--
Confidence 46899999899999988643 23567789999999999999888763111000 0 000000 000000000
Q ss_pred HHHHHHHhhC-CCCCcccHHHHHHHHHHH-hccCeEEEEEeCCCCCCccChhhhHHhhhcCCCCceEEEEc-CchHHHhh
Q 038751 246 AKAIIEGLEG-SLPNLRELNSLLEYIHTS-IKEKKFFLILDDVWPDDYSKWEPFHNCLMNGLCGSRILVTT-RKETVARM 322 (915)
Q Consensus 246 ~~~i~~~l~~-~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTt-R~~~v~~~ 322 (915)
.+.+ ......+..++.+.+... ..+++-++|+|++..-....++.+...+......+.+|++| +...+...
T Consensus 91 ------eidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~T 164 (725)
T PRK07133 91 ------EMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLT 164 (725)
T ss_pred ------EEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHH
Confidence 0000 000111122222222211 13566699999997655567778887777665566655555 44444322
Q ss_pred -hcCcCeEeCCCCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCCCch-HHHHHH
Q 038751 323 -MESTDVISIKELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKGLPL-AAKTIG 381 (915)
Q Consensus 323 -~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~PL-ai~~~~ 381 (915)
......+++.+++.++....+...+...+-... .+.+..|++.++|.+. |+..+-
T Consensus 165 I~SRcq~ieF~~L~~eeI~~~L~~il~kegI~id----~eAl~~LA~lS~GslR~AlslLe 221 (725)
T PRK07133 165 ILSRVQRFNFRRISEDEIVSRLEFILEKENISYE----KNALKLIAKLSSGSLRDALSIAE 221 (725)
T ss_pred HHhhceeEEccCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHH
Confidence 333568999999999999888775533221111 2346678889988765 444443
No 101
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.04 E-value=7.2e-05 Score=87.65 Aligned_cols=194 Identities=14% Similarity=0.159 Sum_probs=112.4
Q ss_pred CccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 038751 171 SDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAII 250 (915)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 250 (915)
.+++|.+..++.|..++.... -.+.+.++|+.|+||||+|+.+.+......... ....++.-...+.|.
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~-----i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~------~~~~c~~c~~c~~i~ 84 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGR-----VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDP------KGRPCGTCEMCRAIA 84 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCC------CCCCCccCHHHHHHh
Confidence 478999999999988885431 245678999999999999999876321100000 001112223333333
Q ss_pred HHhhCC-----CCCcccHHHHHHHH---HH-HhccCeEEEEEeCCCCCCccChhhhHHhhhcCCCCceEEEEcCc-hHHH
Q 038751 251 EGLEGS-----LPNLRELNSLLEYI---HT-SIKEKKFFLILDDVWPDDYSKWEPFHNCLMNGLCGSRILVTTRK-ETVA 320 (915)
Q Consensus 251 ~~l~~~-----~~~~~~~~~~~~~l---~~-~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~-~~v~ 320 (915)
...... .......+++.+.+ .. -..+++-++|+|++..-..+..+.|...+......+.+|++|.. ..+.
T Consensus 85 ~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll 164 (585)
T PRK14950 85 EGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVP 164 (585)
T ss_pred cCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhh
Confidence 221110 00111222222211 11 01245668999999654445567777777665566677666643 3332
Q ss_pred hh-hcCcCeEeCCCCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCCCchHHHH
Q 038751 321 RM-MESTDVISIKELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKGLPLAAKT 379 (915)
Q Consensus 321 ~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~PLai~~ 379 (915)
.. ......+++.+++.++....+.+.+...+.... .+.+..|++.++|.+..+..
T Consensus 165 ~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i~----~eal~~La~~s~Gdlr~al~ 220 (585)
T PRK14950 165 ATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLE----PGALEAIARAATGSMRDAEN 220 (585)
T ss_pred HHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHH
Confidence 22 223568899999999999888877643322122 24567788999998865443
No 102
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.04 E-value=0.00013 Score=87.68 Aligned_cols=198 Identities=14% Similarity=0.149 Sum_probs=113.8
Q ss_pred CccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 038751 171 SDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAII 250 (915)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 250 (915)
.+++|.+..++.|..++.... -.+.+.++|+.|+||||+|+.+.+...-...... ..+..-...+.|.
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~r-----i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~-------~pCg~C~sC~~~~ 82 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGR-----INHAYLFSGPRGCGKTSSARILARSLNCVEGPTS-------TPCGECDSCVALA 82 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCC-------CCCcccHHHHHHH
Confidence 468999999999999886431 2356889999999999999988764211111000 0000001111111
Q ss_pred HH-------hhCCCCCcccHHHHHH---HHH-HHhccCeEEEEEeCCCCCCccChhhhHHhhhcCCCCceEEEEcCc-hH
Q 038751 251 EG-------LEGSLPNLRELNSLLE---YIH-TSIKEKKFFLILDDVWPDDYSKWEPFHNCLMNGLCGSRILVTTRK-ET 318 (915)
Q Consensus 251 ~~-------l~~~~~~~~~~~~~~~---~l~-~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~-~~ 318 (915)
.. +..+......++++.+ .+. .-..++.-++|||++.......++.|+..+..-...+.+|++|.+ ..
T Consensus 83 ~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~k 162 (824)
T PRK07764 83 PGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDK 162 (824)
T ss_pred cCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhh
Confidence 00 0000000011222222 111 112355668899999776677788888888876667777766643 34
Q ss_pred HHhh-hcCcCeEeCCCCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCCCchH-HHHHHhHh
Q 038751 319 VARM-MESTDVISIKELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKGLPLA-AKTIGSLL 384 (915)
Q Consensus 319 v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~PLa-i~~~~~~l 384 (915)
+... ......|++..++.++...++.+.+-..+-... .+....|++.++|.+.. +..+-.++
T Consensus 163 Ll~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~id----~eal~lLa~~sgGdlR~Al~eLEKLi 226 (824)
T PRK07764 163 VIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPVE----PGVLPLVIRAGGGSVRDSLSVLDQLL 226 (824)
T ss_pred hhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 4332 233678999999999998888776532221112 23346688899997743 34443333
No 103
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.03 E-value=0.00017 Score=80.22 Aligned_cols=184 Identities=17% Similarity=0.219 Sum_probs=105.6
Q ss_pred CccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccc------cCCCeEEEEEeCCCCCHHH
Q 038751 171 SDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVI------ENFDKRIWVCVSDPFDEFR 244 (915)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~------~~F~~~~wv~vs~~~~~~~ 244 (915)
.+++|.+...+.+.+.+... .-.+.+.++|+.|+||||+|+.+.+..... ..|...+ +....
T Consensus 17 ~~iig~~~~~~~l~~~i~~~-----~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~-~~l~~------ 84 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENN-----HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNI-FELDA------ 84 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcce-EEecc------
Confidence 46899999999999988543 134688899999999999999887632110 1121111 01110
Q ss_pred HHHHHHHHhhCCCCCcccHHHHHHHHHH----HhccCeEEEEEeCCCCCCccChhhhHHhhhcCCCCceEEEEcCc-hHH
Q 038751 245 IAKAIIEGLEGSLPNLRELNSLLEYIHT----SIKEKKFFLILDDVWPDDYSKWEPFHNCLMNGLCGSRILVTTRK-ETV 319 (915)
Q Consensus 245 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~----~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~-~~v 319 (915)
......+++...+.+ -..+++-++++|++.......++.+...+......+.+|++|.. ..+
T Consensus 85 -------------~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl 151 (367)
T PRK14970 85 -------------ASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKI 151 (367)
T ss_pred -------------ccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccC
Confidence 000111222221111 11245558999998544444566666666554445566655532 222
Q ss_pred Hh-hhcCcCeEeCCCCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCCCch-HHHHHHhH
Q 038751 320 AR-MMESTDVISIKELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKGLPL-AAKTIGSL 383 (915)
Q Consensus 320 ~~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~PL-ai~~~~~~ 383 (915)
.. .......+++.++++++....+...+...+-... .+.+..++..++|.+- ++..+-.+
T Consensus 152 ~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i~----~~al~~l~~~~~gdlr~~~~~lekl 213 (367)
T PRK14970 152 IPTILSRCQIFDFKRITIKDIKEHLAGIAVKEGIKFE----DDALHIIAQKADGALRDALSIFDRV 213 (367)
T ss_pred CHHHHhcceeEecCCccHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 21 1223458999999999999988876643322122 2456678888998665 44444333
No 104
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=1.6e-06 Score=91.37 Aligned_cols=114 Identities=21% Similarity=0.283 Sum_probs=60.6
Q ss_pred cCCCCCcceEEEeeeCCCC-CCCcccCccCccEEEEcCcCCCC--CCCCCCCCCCcceeeccccccceEeCccccCCccc
Q 038751 726 LRPPPDIKSLEIMVFKGRT-PSNWIGSLNKLKMLTLNSFVKCE--IMPPLGKLPSLEILRIWHMRSVKRVGDEFLGMEIS 802 (915)
Q Consensus 726 l~~~~~L~~L~l~~~~~~~-~p~~~~~l~~L~~L~L~~~~~~~--~l~~l~~Lp~L~~L~L~~~~~l~~~~~~~~~~~~l 802 (915)
+..+|+|+.|.+.+|.+.. .......++.|+.|+|++|.... ..+..+.||.|..|+++.|. +..+-. ...+.
T Consensus 218 ~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tg-i~si~~--~d~~s- 293 (505)
T KOG3207|consen 218 LLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTG-IASIAE--PDVES- 293 (505)
T ss_pred HHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccC-cchhcC--CCccc-
Confidence 3445667777776664211 11112246677777777765443 34556777777777777654 322211 00000
Q ss_pred ccccccccCCCcccccCcccceeeecCcccccccccCCCCcccCcccceeecc
Q 038751 803 DHIHIHGTSSSSSVIAFPKLQKLELTGMDELEEWDFGNDDITIMPHIKSLYIT 855 (915)
Q Consensus 803 ~~l~l~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~lp~L~~L~l~ 855 (915)
......||+|++|.+... +...|..... +..+++|..|.+.
T Consensus 294 ----------~~kt~~f~kL~~L~i~~N-~I~~w~sl~~-l~~l~nlk~l~~~ 334 (505)
T KOG3207|consen 294 ----------LDKTHTFPKLEYLNISEN-NIRDWRSLNH-LRTLENLKHLRIT 334 (505)
T ss_pred ----------hhhhcccccceeeecccC-ccccccccch-hhccchhhhhhcc
Confidence 011236788888877765 3444543221 3456666766665
No 105
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.00 E-value=0.00019 Score=74.32 Aligned_cols=202 Identities=22% Similarity=0.209 Sum_probs=120.4
Q ss_pred ccccch---HHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhccccc-----ccCCCeEEEEEeCCCCCHH
Q 038751 172 DVRGRD---EEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDV-----IENFDKRIWVCVSDPFDEF 243 (915)
Q Consensus 172 ~~~Gr~---~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-----~~~F~~~~wv~vs~~~~~~ 243 (915)
.++|.. +.++++.+.|..+ .....+-+.|||.+|.|||++++++....-. ...+ .++.|.....++..
T Consensus 35 rWIgY~~A~~~L~~L~~Ll~~P---~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~-PVv~vq~P~~p~~~ 110 (302)
T PF05621_consen 35 RWIGYPRAKEALDRLEELLEYP---KRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERI-PVVYVQMPPEPDER 110 (302)
T ss_pred CeecCHHHHHHHHHHHHHHhCC---cccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccc-cEEEEecCCCCChH
Confidence 345542 3456666666554 2445677999999999999999998864211 1112 46677788899999
Q ss_pred HHHHHHHHHhhCCCCCcccHHHHHHHHHHHhcc-CeEEEEEeCCCCCC---ccChhhhHHhhh---cCCCCceEEEEcCc
Q 038751 244 RIAKAIIEGLEGSLPNLRELNSLLEYIHTSIKE-KKFFLILDDVWPDD---YSKWEPFHNCLM---NGLCGSRILVTTRK 316 (915)
Q Consensus 244 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~-k~~LlVlDdvw~~~---~~~~~~l~~~l~---~~~~gs~iivTtR~ 316 (915)
.+...|+.+++...........+.....+.++. +--+||+|++++.- ...-..+...+. +.-.=+-|.+-|+.
T Consensus 111 ~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~ 190 (302)
T PF05621_consen 111 RFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTRE 190 (302)
T ss_pred HHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHH
Confidence 999999999998765555555555555455532 34488999996521 112223333333 22334556666654
Q ss_pred hHHHhh-----hcCcCeEeCCCCCH-HHHHHHHHHhH--cCCCCCCchhHHHHHHHHHHHhcCCCchHHH
Q 038751 317 ETVARM-----MESTDVISIKELSE-QECWSLFKRFA--FSGRSPTECEQLEEIGRKIVGKCKGLPLAAK 378 (915)
Q Consensus 317 ~~v~~~-----~~~~~~~~l~~L~~-~~~~~lf~~~~--~~~~~~~~~~~l~~~~~~i~~~c~G~PLai~ 378 (915)
---+-. .+...++.+..... ++...|+.... ..-..++. -...++++.|...++|+.=-+.
T Consensus 191 A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~-l~~~~la~~i~~~s~G~iG~l~ 259 (302)
T PF05621_consen 191 AYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSN-LASPELARRIHERSEGLIGELS 259 (302)
T ss_pred HHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCC-CCCHHHHHHHHHHcCCchHHHH
Confidence 322211 11245677777765 44455554321 11122222 1336788999999999865443
No 106
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.00 E-value=0.0003 Score=79.94 Aligned_cols=183 Identities=16% Similarity=0.183 Sum_probs=106.7
Q ss_pred CccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhccccc---cc----------------CCCeE
Q 038751 171 SDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDV---IE----------------NFDKR 231 (915)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~----------------~F~~~ 231 (915)
.+++|.+...+.+..++.... -.+.+.++|+.|+||||+|+.++....- .. .|...
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~-----i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~ 90 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQR-----VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDL 90 (486)
T ss_pred HHccChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcE
Confidence 468899999999988885431 3456778999999999999888763110 00 01111
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHH-HhccCeEEEEEeCCCCCCccChhhhHHhhhcCCCCceE
Q 038751 232 IWVCVSDPFDEFRIAKAIIEGLEGSLPNLRELNSLLEYIHT-SIKEKKFFLILDDVWPDDYSKWEPFHNCLMNGLCGSRI 310 (915)
Q Consensus 232 ~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~i 310 (915)
.++..+.. .+..+...+.+.+.. -..+++-++|+|+++.-.....+.+...+........+
T Consensus 91 ~eidaas~------------------~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~ 152 (486)
T PRK14953 91 IEIDAASN------------------RGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIF 152 (486)
T ss_pred EEEeCccC------------------CCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEE
Confidence 11111110 111111222222211 11356679999999655445566777777665555666
Q ss_pred EEEc-CchHHHhh-hcCcCeEeCCCCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCCCchHHHHH
Q 038751 311 LVTT-RKETVARM-MESTDVISIKELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKGLPLAAKTI 380 (915)
Q Consensus 311 ivTt-R~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~PLai~~~ 380 (915)
|++| +...+... ......+.+.+++.++....+.+.+-..+-..+ .+.+..|++.++|.+..+...
T Consensus 153 Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~id----~~al~~La~~s~G~lr~al~~ 220 (486)
T PRK14953 153 ILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEYE----EKALDLLAQASEGGMRDAASL 220 (486)
T ss_pred EEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 6555 33333322 223568999999999999888876543322122 234566788899977655443
No 107
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.99 E-value=1.3e-05 Score=86.13 Aligned_cols=89 Identities=16% Similarity=0.078 Sum_probs=62.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCC--CCHHHHHHHHHHHhhCCCCCcccH------HHHHHH
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDP--FDEFRIAKAIIEGLEGSLPNLREL------NSLLEY 269 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~~~~~i~~~l~~~~~~~~~~------~~~~~~ 269 (915)
-..+.|+|++|+|||||++.+++.... ++|+..+||.+.++ .++.++++.+...+-....+.... ..+.+.
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~~-nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~ 246 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAITR-NHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEK 246 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhcc-cCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHH
Confidence 467899999999999999999996433 37999999999876 789999999855443222221111 112222
Q ss_pred HHHH-hccCeEEEEEeCCC
Q 038751 270 IHTS-IKEKKFFLILDDVW 287 (915)
Q Consensus 270 l~~~-l~~k~~LlVlDdvw 287 (915)
.... -.+++.+|++|++.
T Consensus 247 Ae~~~~~GkdVVLlIDEit 265 (415)
T TIGR00767 247 AKRLVEHKKDVVILLDSIT 265 (415)
T ss_pred HHHHHHcCCCeEEEEEChh
Confidence 2222 25899999999994
No 108
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.97 E-value=0.00031 Score=79.84 Aligned_cols=194 Identities=14% Similarity=0.152 Sum_probs=111.8
Q ss_pred CccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 038751 171 SDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAII 250 (915)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 250 (915)
.+++|-+...+.+...+... .-.++..++|+.|+||||+|+.+.+..--...-+. ..+..-...+.+.
T Consensus 14 deiiGqe~v~~~L~~~I~~g-----rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~-------~pC~~C~~C~~~~ 81 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNN-----RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSS-------TPCDTCIQCQSAL 81 (535)
T ss_pred HHccCcHHHHHHHHHHHHcC-----CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCC-------CCCcccHHHHHHh
Confidence 46899998889998888543 23457789999999999999877653110000000 0000000001110
Q ss_pred HHhh-----CCCCCcccHHHHHHHHHHH----hccCeEEEEEeCCCCCCccChhhhHHhhhcCCCCceEEEEcCch-HHH
Q 038751 251 EGLE-----GSLPNLRELNSLLEYIHTS----IKEKKFFLILDDVWPDDYSKWEPFHNCLMNGLCGSRILVTTRKE-TVA 320 (915)
Q Consensus 251 ~~l~-----~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~v~ 320 (915)
.... .........+++.+.+... ..+++-++|+|++.....+..+.+...+......+++|++|.+. .+.
T Consensus 82 ~~~h~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~ 161 (535)
T PRK08451 82 ENRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLP 161 (535)
T ss_pred hcCCCeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCc
Confidence 0000 0000001123333322211 12456689999997766667778888887766677777777653 222
Q ss_pred h-hhcCcCeEeCCCCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCCCchHHHHH
Q 038751 321 R-MMESTDVISIKELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKGLPLAAKTI 380 (915)
Q Consensus 321 ~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~PLai~~~ 380 (915)
. .......+++.+++.++....+.+.+...+-... .+.+..|++.++|.+.-+..+
T Consensus 162 ~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~----~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 162 ATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSYE----PEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred hHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCcHHHHHHH
Confidence 1 1223568999999999999988776543322222 245667888899988655444
No 109
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.96 E-value=1.4e-06 Score=87.15 Aligned_cols=111 Identities=24% Similarity=0.277 Sum_probs=89.4
Q ss_pred HhhccCCCCCCceEEEEecCCCCchhhhhhhhhHHHHhhHHHHHhhcCCCCCcceEEEeeeCCCCCCCcccCccCccEEE
Q 038751 680 NAHLEKKKNLIDLILIFNEREESDDEKASEEMNEEKEAKHEAVCEALRPPPDIKSLEIMVFKGRTPSNWIGSLNKLKMLT 759 (915)
Q Consensus 680 ~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~ 759 (915)
...+.-.+.++.|+++.|... ....|..+++|..|++++|..+.+..|-..+-|+++|.
T Consensus 300 DESvKL~Pkir~L~lS~N~i~---------------------~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 300 DESVKLAPKLRRLILSQNRIR---------------------TVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLK 358 (490)
T ss_pred hhhhhhccceeEEecccccee---------------------eehhhhhcccceEeecccchhHhhhhhHhhhcCEeeee
Confidence 345666778899999988532 23457778999999999999999999999999999999
Q ss_pred EcCcCCCCCCCCCCCCCCcceeeccccccceEeCccccCCcccccccccccCCCcccccCcccceeeecCcc
Q 038751 760 LNSFVKCEIMPPLGKLPSLEILRIWHMRSVKRVGDEFLGMEISDHIHIHGTSSSSSVIAFPKLQKLELTGMD 831 (915)
Q Consensus 760 L~~~~~~~~l~~l~~Lp~L~~L~L~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~f~~L~~L~l~~~~ 831 (915)
|+.| .++++..++.|-+|.+|+++++. ++.+..- .+++.+|.|+.|.+.+.|
T Consensus 359 La~N-~iE~LSGL~KLYSLvnLDl~~N~-Ie~ldeV------------------~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 359 LAQN-KIETLSGLRKLYSLVNLDLSSNQ-IEELDEV------------------NHIGNLPCLETLRLTGNP 410 (490)
T ss_pred hhhh-hHhhhhhhHhhhhheeccccccc-hhhHHHh------------------cccccccHHHHHhhcCCC
Confidence 9988 66788889999999999999876 4444321 126799999999999876
No 110
>CHL00181 cbbX CbbX; Provisional
Probab=97.94 E-value=0.00053 Score=72.64 Aligned_cols=135 Identities=14% Similarity=0.116 Sum_probs=74.1
Q ss_pred EEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHhccCe
Q 038751 199 QIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLRELNSLLEYIHTSIKEKK 278 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 278 (915)
..+.++|++|+||||+|+.+++.....+.-....|+.++. .+ +.....+.. .......+.+. ..
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~----~~----l~~~~~g~~-----~~~~~~~l~~a---~g 123 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTR----DD----LVGQYIGHT-----APKTKEVLKKA---MG 123 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecH----HH----HHHHHhccc-----hHHHHHHHHHc---cC
Confidence 3578999999999999999977321111112222555542 12 222221111 11122223322 23
Q ss_pred EEEEEeCCCCC---------CccChhhhHHhhhcCCCCceEEEEcCchHHHhhh--------cCcCeEeCCCCCHHHHHH
Q 038751 279 FFLILDDVWPD---------DYSKWEPFHNCLMNGLCGSRILVTTRKETVARMM--------ESTDVISIKELSEQECWS 341 (915)
Q Consensus 279 ~LlVlDdvw~~---------~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~--------~~~~~~~l~~L~~~~~~~ 341 (915)
-+|++|++..- ..+..+.+...+.....+.+||+++....+.... .....+.+++++.+|..+
T Consensus 124 gVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~ 203 (287)
T CHL00181 124 GVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQ 203 (287)
T ss_pred CEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHH
Confidence 48999999531 1112233444444444556777777654432211 124589999999999999
Q ss_pred HHHHhHcC
Q 038751 342 LFKRFAFS 349 (915)
Q Consensus 342 lf~~~~~~ 349 (915)
++...+-.
T Consensus 204 I~~~~l~~ 211 (287)
T CHL00181 204 IAKIMLEE 211 (287)
T ss_pred HHHHHHHH
Confidence 98887643
No 111
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.94 E-value=6.3e-05 Score=76.38 Aligned_cols=190 Identities=16% Similarity=0.158 Sum_probs=116.8
Q ss_pred cCccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEE-EEeCCCCCHHHHHHH
Q 038751 170 VSDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIW-VCVSDPFDEFRIAKA 248 (915)
Q Consensus 170 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~w-v~vs~~~~~~~~~~~ 248 (915)
-.+++|-+..++.+.+.+.. ....+...+|++|.|||+-|..++...--...|.+++- .++|...... +.+.
T Consensus 35 ~de~~gQe~vV~~L~~a~~~------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis-vvr~ 107 (346)
T KOG0989|consen 35 FDELAGQEHVVQVLKNALLR------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS-VVRE 107 (346)
T ss_pred HHhhcchHHHHHHHHHHHhh------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc-chhh
Confidence 45789999999999988865 25678899999999999999888764333455665542 2333322111 0000
Q ss_pred HHHHhhCCCCCcccHHHHHHHHHHHh--ccCe-EEEEEeCCCCCCccChhhhHHhhhcCCCCceEEEEcCc-hHHHhhh-
Q 038751 249 IIEGLEGSLPNLRELNSLLEYIHTSI--KEKK-FFLILDDVWPDDYSKWEPFHNCLMNGLCGSRILVTTRK-ETVARMM- 323 (915)
Q Consensus 249 i~~~l~~~~~~~~~~~~~~~~l~~~l--~~k~-~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~-~~v~~~~- 323 (915)
=+ .+...+.....+.. ..++ -.+|||++.....+.|..++..+......++.|+.+.. ..+...+
T Consensus 108 Ki----------k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~ 177 (346)
T KOG0989|consen 108 KI----------KNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLV 177 (346)
T ss_pred hh----------cCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHH
Confidence 00 00111111010000 1133 47889999877788999999999887777776655543 2222222
Q ss_pred cCcCeEeCCCCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCCCc-hHHHHH
Q 038751 324 ESTDVISIKELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKGLP-LAAKTI 380 (915)
Q Consensus 324 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~P-Lai~~~ 380 (915)
....-++.++|.+++...-++..+-..+-..+. +..+.|++.++|-- -|+.++
T Consensus 178 SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~----~al~~I~~~S~GdLR~Ait~L 231 (346)
T KOG0989|consen 178 SRCQKFRFKKLKDEDIVDRLEKIASKEGVDIDD----DALKLIAKISDGDLRRAITTL 231 (346)
T ss_pred hhHHHhcCCCcchHHHHHHHHHHHHHhCCCCCH----HHHHHHHHHcCCcHHHHHHHH
Confidence 224578999999999998888877554443333 34566888898854 344443
No 112
>COG3903 Predicted ATPase [General function prediction only]
Probab=97.93 E-value=1.1e-05 Score=85.55 Aligned_cols=292 Identities=20% Similarity=0.173 Sum_probs=171.6
Q ss_pred ceEEEEEEecCCCcHHHHHHHHhcccccccCCC-eEEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHhc
Q 038751 197 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENFD-KRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLRELNSLLEYIHTSIK 275 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 275 (915)
..+-+.++|.|||||||++-.+.. +...|. .+.+|....-.+...+.-.+...++.... ..+.....+.....
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~---~g~~~~~~~~~~~~ 86 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQ---PGDSAVDTLVRRIG 86 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhcccccc---cchHHHHHHHHHHh
Confidence 468899999999999999988776 455675 45555555555555565555554554322 12334445666777
Q ss_pred cCeEEEEEeCCCCCCccChhhhHHhhhcCCCCceEEEEcCchHHHhhhcCcCeEeCCCCCHH-HHHHHHHHhHcCCCCC-
Q 038751 276 EKKFFLILDDVWPDDYSKWEPFHNCLMNGLCGSRILVTTRKETVARMMESTDVISIKELSEQ-ECWSLFKRFAFSGRSP- 353 (915)
Q Consensus 276 ~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~~~~~~~~l~~L~~~-~~~~lf~~~~~~~~~~- 353 (915)
+++.++|+||.-+- ...-..+...+..+...-.|+.|+|..... .......+.+|+.. ++.++|..++......
T Consensus 87 ~rr~llvldncehl-~~~~a~~i~all~~~~~~~~~atsre~~l~---~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f 162 (414)
T COG3903 87 DRRALLVLDNCEHL-LDACAALIVALLGACPRLAILATSREAILV---AGEVHRRVPSLSLFDEAIELFVCRAVLVALSF 162 (414)
T ss_pred hhhHHHHhcCcHHH-HHHHHHHHHHHHccchhhhhHHHhHhhhcc---cccccccCCccccCCchhHHHHHHHHHhccce
Confidence 89999999997210 011122344455555566788888865432 23456677777764 7888887765433221
Q ss_pred CchhHHHHHHHHHHHhcCCCchHHHHHHhHhhcCCCHHHHHHHHhhhccccc-------cccccchHHHHHhhcCCChHh
Q 038751 354 TECEQLEEIGRKIVGKCKGLPLAAKTIGSLLRFKKTREEWHIILNSEMWQLE-------EFERGLLAPLLLSYNDLPSAI 426 (915)
Q Consensus 354 ~~~~~l~~~~~~i~~~c~G~PLai~~~~~~l~~~~~~~~w~~~~~~~~~~~~-------~~~~~~~~~l~~sy~~L~~~~ 426 (915)
.....-......|.++..|.|++|...+...+.-.. .+-...++.....+. .-.......+.+||.-|..-.
T Consensus 163 ~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~-~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe 241 (414)
T COG3903 163 WLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSP-DEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWE 241 (414)
T ss_pred eecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCH-HHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHH
Confidence 111222355778999999999999999988875322 222222211111111 112347788999999999988
Q ss_pred hhHHhHhccCCCCcccChHHHHHHHHHcCCcccCCCccHHHHHHHHHHHHHHcccccccccCCCCeeEEEechHHHHHHH
Q 038751 427 KRCFLYCAVFPKDYNLDKDELVKLWMAQGYIEQKGNIEMEMTGEWYFDFLATRSFFQEFDEEKEGTVRCKMHDIVHDFAQ 506 (915)
Q Consensus 427 k~cf~~~s~fp~~~~i~~~~Li~~W~aeg~i~~~~~~~~e~~~~~~l~~L~~~sll~~~~~~~~~~~~~~mHdlv~d~a~ 506 (915)
+-.|.-++.|.-.|... ...|.+-|-.... +......-+..+++.+++...+.. +..+ |+.-+-+|.++.
T Consensus 242 ~~~~~rLa~~~g~f~~~----l~~~~a~g~~~~~----~~y~~~~a~~ll~~kslv~a~~~~-~~a~-~Rl~eT~r~Yal 311 (414)
T COG3903 242 RALFGRLAVFVGGFDLG----LALAVAAGADVDV----PRYLVLLALTLLVDKSLVVALDLL-GRAR-YRLLETGRRYAL 311 (414)
T ss_pred HHHhcchhhhhhhhccc----HHHHHhcCCcccc----chHHHHHHHHHHhhccchhhhhhh-hHHH-HHHHHHHHHHHH
Confidence 88999999997765433 3445444422100 111222235667777776544332 1111 334444455544
Q ss_pred HHh
Q 038751 507 YLT 509 (915)
Q Consensus 507 ~~~ 509 (915)
.+-
T Consensus 312 aeL 314 (414)
T COG3903 312 AEL 314 (414)
T ss_pred HHH
Confidence 433
No 113
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.91 E-value=0.00036 Score=81.68 Aligned_cols=176 Identities=15% Similarity=0.161 Sum_probs=109.4
Q ss_pred CccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccc---------------------cccCCC
Q 038751 171 SDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKD---------------------VIENFD 229 (915)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~---------------------~~~~F~ 229 (915)
.+++|.+...+.+..++... .-.+.+.++|+.|+||||+|+.+..... ...+|+
T Consensus 17 ~~viGq~~~~~~L~~~i~~~-----~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n 91 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATN-----KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN 91 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc
Confidence 46899999999999988643 2346688999999999999988766321 011232
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHH----hccCeEEEEEeCCCCCCccChhhhHHhhhcCC
Q 038751 230 KRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLRELNSLLEYIHTS----IKEKKFFLILDDVWPDDYSKWEPFHNCLMNGL 305 (915)
Q Consensus 230 ~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~ 305 (915)
. ..+..+... ..+++...+.+. ..+++-++|+|++..-+...++.|...+....
T Consensus 92 ~-~~ld~~~~~---------------------~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp 149 (614)
T PRK14971 92 I-HELDAASNN---------------------SVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPP 149 (614)
T ss_pred e-EEecccccC---------------------CHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCC
Confidence 1 111111111 122222222111 12445588999997666667788888888766
Q ss_pred CCceEEEEc-CchHHHhh-hcCcCeEeCCCCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCCCchHH
Q 038751 306 CGSRILVTT-RKETVARM-MESTDVISIKELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKGLPLAA 377 (915)
Q Consensus 306 ~gs~iivTt-R~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~PLai 377 (915)
.++.+|++| ....+... ......+++.+++.++....+.+.+...+-... .+.+..|++.++|..--+
T Consensus 150 ~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~----~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 150 SYAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAE----PEALNVIAQKADGGMRDA 219 (614)
T ss_pred CCeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 677766655 43443332 233678999999999999888876543322122 234667888899866543
No 114
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.91 E-value=0.00042 Score=81.10 Aligned_cols=196 Identities=14% Similarity=0.190 Sum_probs=112.2
Q ss_pred CccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 038751 171 SDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAII 250 (915)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 250 (915)
.+++|.+...+.|..++.... -.+.+.++|+.|+||||+|+.+++...-.. .+.. ....+..-...+.+.
T Consensus 16 ~~liGq~~i~~~L~~~l~~~r-----l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~-~~~~----~~~~Cg~C~~C~~i~ 85 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNR-----IAPAYLFTGPRGTGKTSSARILAKSLNCLN-SDKP----TPEPCGKCELCRAIA 85 (620)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCChHHHHHHHHHHhcCCC-cCCC----CCCCCcccHHHHHHh
Confidence 468999999999988886431 235678999999999999999877421111 1000 001122222333332
Q ss_pred HHhhCC-----CCCcccHHHHHHHHHHH----hccCeEEEEEeCCCCCCccChhhhHHhhhcCCCCceEEEEcCch-HHH
Q 038751 251 EGLEGS-----LPNLRELNSLLEYIHTS----IKEKKFFLILDDVWPDDYSKWEPFHNCLMNGLCGSRILVTTRKE-TVA 320 (915)
Q Consensus 251 ~~l~~~-----~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~v~ 320 (915)
...... .......+++.+.+... ..+++-++|+|++..-..+.++.|...+........+|++|.+. .+.
T Consensus 86 ~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~ll 165 (620)
T PRK14948 86 AGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVL 165 (620)
T ss_pred cCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhh
Confidence 221110 00111223333322211 12455689999997655566777887777655566666655443 232
Q ss_pred hh-hcCcCeEeCCCCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCCCchHHHHH
Q 038751 321 RM-MESTDVISIKELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKGLPLAAKTI 380 (915)
Q Consensus 321 ~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~PLai~~~ 380 (915)
.. ......+++..++.++....+.+.+...+.... .+.+..|++.++|.+..+...
T Consensus 166 pTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~is----~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 166 PTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIE----PEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred HHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 22 233567889999999988888776543221111 234677888999987655433
No 115
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.91 E-value=6.4e-06 Score=92.87 Aligned_cols=174 Identities=25% Similarity=0.277 Sum_probs=96.3
Q ss_pred ccCCCCceeEEEeccCCCCceeccccchhccccCC-cceeeecCCCCCccccccccCCCcCCCccc-----CcccCCcCC
Q 038751 551 SIFDAKTLHSLILVYSSNNQVAASPVLQGLFDQLT-CLRALKIEDLPPTIKIPKGLENLIHLRYLK-----LSMVPNGIE 624 (915)
Q Consensus 551 ~~~~~~~Lr~L~l~~~~~~lrv~~~~lp~~i~~L~-~Lr~L~l~~~~~~~~lP~~i~~L~~Lr~L~-----l~~lP~~i~ 624 (915)
.+..++.+..|.+.++ .+..+|..++.+. +|++|+++.+... .+|..++++++|+.|+ +..+|...+
T Consensus 111 ~~~~~~~l~~L~l~~n------~i~~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~ 183 (394)
T COG4886 111 ELLELTNLTSLDLDNN------NITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSDLPKLLS 183 (394)
T ss_pred hhhcccceeEEecCCc------ccccCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhhhhhhhhh
Confidence 3444456666666655 4566666666664 7777777766665 6666666666676666 334444444
Q ss_pred CCCCCCccCceeecccCCccCCCCcCCCCCcCccccccceeEcCccCCCChhhHhHhhccCCCCCCceEEEEecCCCCch
Q 038751 625 RLTSLRTLSEFAVARVGGKYSSKSCNLEGLRPLNHLRGFLQISGLGNVTDADEAKNAHLEKKKNLIDLILIFNEREESDD 704 (915)
Q Consensus 625 ~L~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~ 704 (915)
.+++|+.|++.... +..++. ....+..|++|.++.|..
T Consensus 184 ~~~~L~~L~ls~N~------------i~~l~~-------------------------~~~~~~~L~~l~~~~N~~----- 221 (394)
T COG4886 184 NLSNLNNLDLSGNK------------ISDLPP-------------------------EIELLSALEELDLSNNSI----- 221 (394)
T ss_pred hhhhhhheeccCCc------------cccCch-------------------------hhhhhhhhhhhhhcCCcc-----
Confidence 55555555543221 111111 011223355555554421
Q ss_pred hhhhhhhhHHHHhhHHHHHhhcCCCCCcceEEEeeeCCCCCCCcccCccCccEEEEcCcCCCCCCCCCCCCCCcceeecc
Q 038751 705 EKASEEMNEEKEAKHEAVCEALRPPPDIKSLEIMVFKGRTPSNWIGSLNKLKMLTLNSFVKCEIMPPLGKLPSLEILRIW 784 (915)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~Lp~L~~L~L~ 784 (915)
...+..+....++..|.+.++....+|.+++.+++|+.|++++|. ...++.++.+.+|++|+++
T Consensus 222 ---------------~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~-i~~i~~~~~~~~l~~L~~s 285 (394)
T COG4886 222 ---------------IELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQ-ISSISSLGSLTNLRELDLS 285 (394)
T ss_pred ---------------eecchhhhhcccccccccCCceeeeccchhccccccceecccccc-ccccccccccCccCEEecc
Confidence 111223334455555555555555556677777778888777763 3445557777778888777
Q ss_pred ccccc
Q 038751 785 HMRSV 789 (915)
Q Consensus 785 ~~~~l 789 (915)
++...
T Consensus 286 ~n~~~ 290 (394)
T COG4886 286 GNSLS 290 (394)
T ss_pred Ccccc
Confidence 76533
No 116
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.91 E-value=0.00019 Score=71.88 Aligned_cols=123 Identities=22% Similarity=0.292 Sum_probs=73.1
Q ss_pred cccCccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHH
Q 038751 168 INVSDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAK 247 (915)
Q Consensus 168 ~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 247 (915)
+.-++++|.+.+++.|++-...-.. .....-+.+||..|+|||++++.+.+...-++ .--|.|..
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt~~Fl~--G~pannvLL~G~rGtGKSSlVkall~~y~~~G----LRlIev~k--------- 88 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENTEQFLQ--GLPANNVLLWGARGTGKSSLVKALLNEYADQG----LRLIEVSK--------- 88 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHc--CCCCcceEEecCCCCCHHHHHHHHHHHHhhcC----ceEEEECH---------
Confidence 4456799999998888865433221 12345577899999999999999887322211 11222222
Q ss_pred HHHHHhhCCCCCcccHHHHHHHHHHHhccCeEEEEEeCCC-CCCccChhhhHHhhhcC---C-CCceEEEEcCch
Q 038751 248 AIIEGLEGSLPNLRELNSLLEYIHTSIKEKKFFLILDDVW-PDDYSKWEPFHNCLMNG---L-CGSRILVTTRKE 317 (915)
Q Consensus 248 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw-~~~~~~~~~l~~~l~~~---~-~gs~iivTtR~~ 317 (915)
.+..++..+.+.++. ...||+|++||+- ++....+..++..|..+ . ....|..||-..
T Consensus 89 ----------~~L~~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRR 151 (249)
T PF05673_consen 89 ----------EDLGDLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRR 151 (249)
T ss_pred ----------HHhccHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchh
Confidence 223344444554442 3579999999983 23334567777777653 1 233444455433
No 117
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.90 E-value=4.1e-05 Score=82.91 Aligned_cols=141 Identities=19% Similarity=0.272 Sum_probs=92.5
Q ss_pred HhhcCCCCCcceEEEeeeCCCCCCCcccCccCccEEEEcCcCCCCCCCCCCCCCCcceeeccccccceEeCccccCCccc
Q 038751 723 CEALRPPPDIKSLEIMVFKGRTPSNWIGSLNKLKMLTLNSFVKCEIMPPLGKLPSLEILRIWHMRSVKRVGDEFLGMEIS 802 (915)
Q Consensus 723 ~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~Lp~L~~L~L~~~~~l~~~~~~~~~~~~l 802 (915)
...+..+.+++.|++++|....+|. ...+|+.|.+++|..+..+|..- .++|++|++++|..+..+|.. +
T Consensus 45 ~~r~~~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L-P~nLe~L~Ls~Cs~L~sLP~s------L 114 (426)
T PRK15386 45 TPQIEEARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI-PEGLEKLTVCHCPEISGLPES------V 114 (426)
T ss_pred HHHHHHhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh-hhhhhheEccCcccccccccc------c
Confidence 3345556889999999998888883 34579999999998888777421 358999999999878777654 4
Q ss_pred ccccccccCCCcccccC-cccceeeecCcccccccccCCCCcccC-cccceeecccCccccCCCcCCCCCCCcCeEeEcC
Q 038751 803 DHIHIHGTSSSSSVIAF-PKLQKLELTGMDELEEWDFGNDDITIM-PHIKSLYITYCEKLKSLPELLLRSTTLESLTIFG 880 (915)
Q Consensus 803 ~~l~l~~~~~~~~~~~f-~~L~~L~l~~~~~l~~~~~~~~~~~~l-p~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~ 880 (915)
+.|++.++.... ++.+ ++|+.|.+.+......+... . .+ ++|+.|.+.+|..+ .+|..+. .+|+.|.+..
T Consensus 115 e~L~L~~n~~~~-L~~LPssLk~L~I~~~n~~~~~~lp-~---~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~ 186 (426)
T PRK15386 115 RSLEIKGSATDS-IKNVPNGLTSLSINSYNPENQARID-N---LISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHI 186 (426)
T ss_pred ceEEeCCCCCcc-cccCcchHhheeccccccccccccc-c---ccCCcccEEEecCCCcc-cCccccc--ccCcEEEecc
Confidence 555555443322 3334 47788877543222112111 0 23 57888888888644 4555443 4777777766
Q ss_pred C
Q 038751 881 V 881 (915)
Q Consensus 881 c 881 (915)
+
T Consensus 187 n 187 (426)
T PRK15386 187 E 187 (426)
T ss_pred c
Confidence 4
No 118
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.90 E-value=3.6e-07 Score=99.18 Aligned_cols=149 Identities=20% Similarity=0.233 Sum_probs=106.1
Q ss_pred CCCCCcceEEEeeeCCCCCCCcccCccCccEEEEcCcCCCCCCCCCCCCCCcceeeccccccceEeCccccCCccccccc
Q 038751 727 RPPPDIKSLEIMVFKGRTPSNWIGSLNKLKMLTLNSFVKCEIMPPLGKLPSLEILRIWHMRSVKRVGDEFLGMEISDHIH 806 (915)
Q Consensus 727 ~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~Lp~L~~L~L~~~~~l~~~~~~~~~~~~l~~l~ 806 (915)
+.+-.|+.|.++.|....+|..+.++..|+.|+|+.|......+.+..|| |+.|-++++. ++.+|.++.....+..++
T Consensus 95 ~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNk-l~~lp~~ig~~~tl~~ld 172 (722)
T KOG0532|consen 95 CAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNK-LTSLPEEIGLLPTLAHLD 172 (722)
T ss_pred HHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCc-cccCCcccccchhHHHhh
Confidence 33445666777777777778778888888888888775443334466665 7787777654 777777776666666677
Q ss_pred ccccC---CCcccccCcccceeeecCcccccccccCCCCcccCcccceeecccCccccCCCcCCCCCCCcCeEeEcCCcc
Q 038751 807 IHGTS---SSSSVIAFPKLQKLELTGMDELEEWDFGNDDITIMPHIKSLYITYCEKLKSLPELLLRSTTLESLTIFGVPI 883 (915)
Q Consensus 807 l~~~~---~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~lp~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~c~~ 883 (915)
.+.|. ++..++.+.+|+.|.+.... +..++-+ +..+ .|..|+++ |.++..||-.+.+|+.|++|-+.++|.
T Consensus 173 ~s~nei~slpsql~~l~slr~l~vrRn~-l~~lp~E---l~~L-pLi~lDfS-cNkis~iPv~fr~m~~Lq~l~LenNPL 246 (722)
T KOG0532|consen 173 VSKNEIQSLPSQLGYLTSLRDLNVRRNH-LEDLPEE---LCSL-PLIRLDFS-CNKISYLPVDFRKMRHLQVLQLENNPL 246 (722)
T ss_pred hhhhhhhhchHHhhhHHHHHHHHHhhhh-hhhCCHH---HhCC-ceeeeecc-cCceeecchhhhhhhhheeeeeccCCC
Confidence 76663 34556778888888887653 3344322 3344 48889988 779999999999999999999999875
No 119
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.88 E-value=0.00043 Score=78.21 Aligned_cols=183 Identities=17% Similarity=0.195 Sum_probs=106.7
Q ss_pred CccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccc---------------------cCCC
Q 038751 171 SDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVI---------------------ENFD 229 (915)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---------------------~~F~ 229 (915)
.+++|.+..++.+.+++.... -.+.+.++|+.|+||||+|+.+.+...-. .+++
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~-----i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d 91 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNR-----AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD 91 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc
Confidence 478999999999998885431 24678899999999999998886632110 0111
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHH-HhccCeEEEEEeCCCCCCccChhhhHHhhhcCCCCc
Q 038751 230 KRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLRELNSLLEYIHT-SIKEKKFFLILDDVWPDDYSKWEPFHNCLMNGLCGS 308 (915)
Q Consensus 230 ~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs 308 (915)
. +++..... .+..+..++.+.+.. -..+++-++|+|++........+.+...+.......
T Consensus 92 ~-~~i~g~~~------------------~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~ 152 (451)
T PRK06305 92 V-LEIDGASH------------------RGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHV 152 (451)
T ss_pred e-EEeecccc------------------CCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCc
Confidence 1 11110000 011111112221111 113566788999985544445666777776655566
Q ss_pred eEEEEcCc-hHHHhh-hcCcCeEeCCCCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCCCch-HHHHHH
Q 038751 309 RILVTTRK-ETVARM-MESTDVISIKELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKGLPL-AAKTIG 381 (915)
Q Consensus 309 ~iivTtR~-~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~PL-ai~~~~ 381 (915)
.+|++|.. ..+... ......+++.++++++....+.+.+-..+-... .+.+..|++.++|.+. |+..+-
T Consensus 153 ~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i~----~~al~~L~~~s~gdlr~a~~~Le 224 (451)
T PRK06305 153 KFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIETS----REALLPIARAAQGSLRDAESLYD 224 (451)
T ss_pred eEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHH
Confidence 77766643 222221 223568999999999998888776533221121 2456778889999664 444443
No 120
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.88 E-value=0.00017 Score=87.83 Aligned_cols=154 Identities=18% Similarity=0.189 Sum_probs=85.2
Q ss_pred CccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccc---c-CCCeEEE-EEeCCCCCHHHH
Q 038751 171 SDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVI---E-NFDKRIW-VCVSDPFDEFRI 245 (915)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~-~F~~~~w-v~vs~~~~~~~~ 245 (915)
..++||+.++.++++.|... ...-+.++|++|+||||+|+.++....-. . -....+| +..+.
T Consensus 187 d~~iGr~~ei~~~i~~l~r~------~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~------- 253 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRR------RQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGL------- 253 (852)
T ss_pred CcccCCHHHHHHHHHHHhcC------CcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhh-------
Confidence 46899999999999999654 23345699999999999999888732101 0 1122333 22221
Q ss_pred HHHHHHHhhCCCCCcccH-HHHHHHHHHHh-ccCeEEEEEeCCCCCCc-----cChh---hhHHhhhcCCCCceEEEEcC
Q 038751 246 AKAIIEGLEGSLPNLREL-NSLLEYIHTSI-KEKKFFLILDDVWPDDY-----SKWE---PFHNCLMNGLCGSRILVTTR 315 (915)
Q Consensus 246 ~~~i~~~l~~~~~~~~~~-~~~~~~l~~~l-~~k~~LlVlDdvw~~~~-----~~~~---~l~~~l~~~~~gs~iivTtR 315 (915)
+ ..+... ..+. +.+...+.+.- .+++.+|++|+++.-.. ..-+ .+...+..+ .-++|-||.
T Consensus 254 ---l---~ag~~~-~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G--~l~~IgaTT 324 (852)
T TIGR03345 254 ---L---QAGASV-KGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARG--ELRTIAATT 324 (852)
T ss_pred ---h---hccccc-chHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCC--CeEEEEecC
Confidence 0 000000 0111 11222222221 24689999999864211 1122 133333221 345666666
Q ss_pred chHHHhh-------hcCcCeEeCCCCCHHHHHHHHHHh
Q 038751 316 KETVARM-------MESTDVISIKELSEQECWSLFKRF 346 (915)
Q Consensus 316 ~~~v~~~-------~~~~~~~~l~~L~~~~~~~lf~~~ 346 (915)
.++.... ......+.+++++.++..+++...
T Consensus 325 ~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~ 362 (852)
T TIGR03345 325 WAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGL 362 (852)
T ss_pred HHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHH
Confidence 5433211 123468999999999999997543
No 121
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.87 E-value=0.00081 Score=70.55 Aligned_cols=167 Identities=17% Similarity=0.229 Sum_probs=107.0
Q ss_pred cCccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHH
Q 038751 170 VSDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAI 249 (915)
Q Consensus 170 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 249 (915)
++.+.+|+.++..+...+...+ ..-+..|.|+|.+|.|||.+.+.+.+... ...+|+++-+.++.+-++..|
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~---~~~PS~~~iyG~sgTGKT~~~r~~l~~~n-----~~~vw~n~~ecft~~~lle~I 76 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNS---CTIPSIVHIYGHSGTGKTYLVRQLLRKLN-----LENVWLNCVECFTYAILLEKI 76 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCC---cccceeEEEeccCCCchhHHHHHHHhhcC-----CcceeeehHHhccHHHHHHHH
Confidence 4678999999999999886542 12456679999999999999999998542 136899999999999999999
Q ss_pred HHHhhCCCCCc-------ccHHHHHHHHHH--Hhc--cCeEEEEEeCCCCCCccChhh-hHHh---hhc-CCCCceEEEE
Q 038751 250 IEGLEGSLPNL-------RELNSLLEYIHT--SIK--EKKFFLILDDVWPDDYSKWEP-FHNC---LMN-GLCGSRILVT 313 (915)
Q Consensus 250 ~~~l~~~~~~~-------~~~~~~~~~l~~--~l~--~k~~LlVlDdvw~~~~~~~~~-l~~~---l~~-~~~gs~iivT 313 (915)
+.+......+. ......+..+.+ ... ++.++||||++.. ..+.+. +... +.. .....-+|++
T Consensus 77 L~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~--lrD~~a~ll~~l~~L~el~~~~~i~iil 154 (438)
T KOG2543|consen 77 LNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADA--LRDMDAILLQCLFRLYELLNEPTIVIIL 154 (438)
T ss_pred HHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHh--hhccchHHHHHHHHHHHHhCCCceEEEE
Confidence 99985221111 112223333333 222 4589999999842 223333 1111 111 1223444555
Q ss_pred cCchHHHhh---hcC--cCeEeCCCCCHHHHHHHHHHh
Q 038751 314 TRKETVARM---MES--TDVISIKELSEQECWSLFKRF 346 (915)
Q Consensus 314 tR~~~v~~~---~~~--~~~~~l~~L~~~~~~~lf~~~ 346 (915)
+-....... +++ ..++....-+.+|...++.+.
T Consensus 155 s~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 155 SAPSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred eccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 543322222 233 346677888999999988653
No 122
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.87 E-value=0.00021 Score=75.10 Aligned_cols=162 Identities=14% Similarity=0.126 Sum_probs=81.2
Q ss_pred ccccchHHHHHHHHHHhcc--------cc-cccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCH
Q 038751 172 DVRGRDEEKNILKRKLLCE--------SN-EERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDE 242 (915)
Q Consensus 172 ~~~Gr~~~~~~l~~~L~~~--------~~-~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 242 (915)
.++|.+..+++|.+..... .+ ...+...-+.++|++|+||||+|+.+++.....+.-....++.++.
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~---- 82 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVER---- 82 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecH----
Confidence 4788877666665432211 00 0123456678999999999999999976321111111122333322
Q ss_pred HHHHHHHHHHhhCCCCCcccHHHHHHHHHHHhccCeEEEEEeCCCCCC--------ccChhhhHHhhhcCCCCceEEEEc
Q 038751 243 FRIAKAIIEGLEGSLPNLRELNSLLEYIHTSIKEKKFFLILDDVWPDD--------YSKWEPFHNCLMNGLCGSRILVTT 314 (915)
Q Consensus 243 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~--------~~~~~~l~~~l~~~~~gs~iivTt 314 (915)
.++.. .. .+ .....+...+.+. ..-+|++|++..-. .+..+.+...+........+|+++
T Consensus 83 ~~l~~----~~----~g-~~~~~~~~~~~~a---~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~ 150 (261)
T TIGR02881 83 ADLVG----EY----IG-HTAQKTREVIKKA---LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAG 150 (261)
T ss_pred HHhhh----hh----cc-chHHHHHHHHHhc---cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecC
Confidence 11111 11 01 0111222222222 23488999996411 112333444444433334555665
Q ss_pred CchHHHh-------hhcC-cCeEeCCCCCHHHHHHHHHHhHcC
Q 038751 315 RKETVAR-------MMES-TDVISIKELSEQECWSLFKRFAFS 349 (915)
Q Consensus 315 R~~~v~~-------~~~~-~~~~~l~~L~~~~~~~lf~~~~~~ 349 (915)
....... .... ...+++++++.++..+++.+.+..
T Consensus 151 ~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~ 193 (261)
T TIGR02881 151 YSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKE 193 (261)
T ss_pred CcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHH
Confidence 4432211 1111 346889999999999999877643
No 123
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.86 E-value=4.7e-07 Score=98.26 Aligned_cols=96 Identities=23% Similarity=0.248 Sum_probs=76.8
Q ss_pred eEEEEEEccccccCccccCCCCceeEEEeccCCCCceeccccchhccccCCcceeeecCCCCCccccccccCCCcCCCcc
Q 038751 535 LRHLMLVLGFWAKFPFSIFDAKTLHSLILVYSSNNQVAASPVLQGLFDQLTCLRALKIEDLPPTIKIPKGLENLIHLRYL 614 (915)
Q Consensus 535 ~r~Lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~lrv~~~~lp~~i~~L~~Lr~L~l~~~~~~~~lP~~i~~L~~Lr~L 614 (915)
.-..+++.|.+..+|.....+..|.++++..|. +..+|..+++|..|.||||+.+..+ .+|..++.|. |+.|
T Consensus 77 t~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~------~r~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvl 148 (722)
T KOG0532|consen 77 TVFADLSRNRFSELPEEACAFVSLESLILYHNC------IRTIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVL 148 (722)
T ss_pred hhhhhccccccccCchHHHHHHHHHHHHHHhcc------ceecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeE
Confidence 344677777777788888888999999998773 5569999999999999999999888 8999998874 5555
Q ss_pred c-----CcccCCcCCCCCCCCccCceeec
Q 038751 615 K-----LSMVPNGIERLTSLRTLSEFAVA 638 (915)
Q Consensus 615 ~-----l~~lP~~i~~L~~L~~L~~~~~~ 638 (915)
- +..+|.+|+-+..|.+|+.+.+.
T Consensus 149 i~sNNkl~~lp~~ig~~~tl~~ld~s~ne 177 (722)
T KOG0532|consen 149 IVSNNKLTSLPEEIGLLPTLAHLDVSKNE 177 (722)
T ss_pred EEecCccccCCcccccchhHHHhhhhhhh
Confidence 3 67788888877888888765443
No 124
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.84 E-value=6.8e-06 Score=79.21 Aligned_cols=126 Identities=23% Similarity=0.434 Sum_probs=48.0
Q ss_pred cCccCccEEEEcCcCCCCCCCCCC-CCCCcceeeccccccceEeCccccCCcccccccccccCCCcccccCcccceeeec
Q 038751 750 GSLNKLKMLTLNSFVKCEIMPPLG-KLPSLEILRIWHMRSVKRVGDEFLGMEISDHIHIHGTSSSSSVIAFPKLQKLELT 828 (915)
Q Consensus 750 ~~l~~L~~L~L~~~~~~~~l~~l~-~Lp~L~~L~L~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~f~~L~~L~l~ 828 (915)
.+..+++.|+|.++ ....+..++ .+.+|+.|++++|. ++.++. +..+++|+.|.+.
T Consensus 16 ~n~~~~~~L~L~~n-~I~~Ie~L~~~l~~L~~L~Ls~N~-I~~l~~---------------------l~~L~~L~~L~L~ 72 (175)
T PF14580_consen 16 NNPVKLRELNLRGN-QISTIENLGATLDKLEVLDLSNNQ-ITKLEG---------------------LPGLPRLKTLDLS 72 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS---S--TT-------------------------TT--EEE--
T ss_pred cccccccccccccc-ccccccchhhhhcCCCEEECCCCC-CccccC---------------------ccChhhhhhcccC
Confidence 35567899999988 444566676 58899999999886 555532 3478999999998
Q ss_pred CcccccccccCCCCc-ccCcccceeecccCccccCCC--cCCCCCCCcCeEeEcCCcchhHhhccCCCCCc--ccccCCC
Q 038751 829 GMDELEEWDFGNDDI-TIMPHIKSLYITYCEKLKSLP--ELLLRSTTLESLTIFGVPIVQESFKRRTEKDW--SKISHIP 903 (915)
Q Consensus 829 ~~~~l~~~~~~~~~~-~~lp~L~~L~l~~c~~L~~lp--~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~--~~i~~ip 903 (915)
+. .+..+.. .+ ..+|+|++|++.++ ++..+- ..+..+++|+.|++.++|--.. ++| .-|.++|
T Consensus 73 ~N-~I~~i~~---~l~~~lp~L~~L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-------~~YR~~vi~~lP 140 (175)
T PF14580_consen 73 NN-RISSISE---GLDKNLPNLQELYLSNN-KISDLNELEPLSSLPKLRVLSLEGNPVCEK-------KNYRLFVIYKLP 140 (175)
T ss_dssp SS----S-CH---HHHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGS-------TTHHHHHHHH-T
T ss_pred CC-CCCcccc---chHHhCCcCCEEECcCC-cCCChHHhHHHHcCCCcceeeccCCcccch-------hhHHHHHHHHcC
Confidence 85 3544421 12 26899999999987 666654 3456789999999999997321 233 2348999
Q ss_pred cceeccc
Q 038751 904 NIKIQNI 910 (915)
Q Consensus 904 ~v~~~~~ 910 (915)
++++-|.
T Consensus 141 ~Lk~LD~ 147 (175)
T PF14580_consen 141 SLKVLDG 147 (175)
T ss_dssp T-SEETT
T ss_pred hhheeCC
Confidence 8887653
No 125
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.83 E-value=0.00068 Score=76.35 Aligned_cols=159 Identities=16% Similarity=0.196 Sum_probs=92.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcccccccCC--CeEEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHhc
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYNDKDVIENF--DKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLRELNSLLEYIHTSIK 275 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 275 (915)
...+.|+|..|+|||+|++.+++. ..... ..+++++. .++...+...+... ..+. +.+.++
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~--l~~~~~~~~v~yi~~------~~~~~~~~~~~~~~-----~~~~----~~~~~~ 198 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNE--ILENNPNAKVVYVSS------EKFTNDFVNALRNN-----KMEE----FKEKYR 198 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HHHhCCCCcEEEEEH------HHHHHHHHHHHHcC-----CHHH----HHHHHH
Confidence 356889999999999999999984 32222 23456643 34444555554321 1222 233333
Q ss_pred cCeEEEEEeCCCCCCcc-Ch-hhhHHhhhcC-CCCceEEEEcCch-H--------HHhhhcCcCeEeCCCCCHHHHHHHH
Q 038751 276 EKKFFLILDDVWPDDYS-KW-EPFHNCLMNG-LCGSRILVTTRKE-T--------VARMMESTDVISIKELSEQECWSLF 343 (915)
Q Consensus 276 ~k~~LlVlDdvw~~~~~-~~-~~l~~~l~~~-~~gs~iivTtR~~-~--------v~~~~~~~~~~~l~~L~~~~~~~lf 343 (915)
+ .-+||+||++..... .+ +.+...+... ..|..+|+|+... . +.+.+.....+.+++.+.++-..++
T Consensus 199 ~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il 277 (405)
T TIGR00362 199 S-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAIL 277 (405)
T ss_pred h-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHH
Confidence 2 338899999642211 11 2233333321 2355688887642 2 1122233457999999999999999
Q ss_pred HHhHcCCCCCCchhHHHHHHHHHHHhcCCCchHHH
Q 038751 344 KRFAFSGRSPTECEQLEEIGRKIVGKCKGLPLAAK 378 (915)
Q Consensus 344 ~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~PLai~ 378 (915)
.+++......-. +++...|++.+.|..-.+.
T Consensus 278 ~~~~~~~~~~l~----~e~l~~ia~~~~~~~r~l~ 308 (405)
T TIGR00362 278 QKKAEEEGLELP----DEVLEFIAKNIRSNVRELE 308 (405)
T ss_pred HHHHHHcCCCCC----HHHHHHHHHhcCCCHHHHH
Confidence 988754322111 3556678888888766443
No 126
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.81 E-value=0.00066 Score=78.51 Aligned_cols=193 Identities=14% Similarity=0.114 Sum_probs=111.1
Q ss_pred CccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 038751 171 SDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAII 250 (915)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 250 (915)
.+++|-+..++.+..++... .-.+.+.++|+.|+||||+|+.+++...-...... ..+... ...+.|.
T Consensus 16 ~diiGqe~iv~~L~~~i~~~-----~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~---~pC~~C----~~C~~i~ 83 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESN-----KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTP---MPCGEC----SSCKSID 83 (563)
T ss_pred HHccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCC---CCCccc----hHHHHHH
Confidence 46899999999999988643 23467889999999999999998774211110000 000000 0111111
Q ss_pred HHhhC-----CCCCcccHHHHHHHH---HH-HhccCeEEEEEeCCCCCCccChhhhHHhhhcCCCCceEEEEcCc-hHHH
Q 038751 251 EGLEG-----SLPNLRELNSLLEYI---HT-SIKEKKFFLILDDVWPDDYSKWEPFHNCLMNGLCGSRILVTTRK-ETVA 320 (915)
Q Consensus 251 ~~l~~-----~~~~~~~~~~~~~~l---~~-~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~-~~v~ 320 (915)
..-.. ........+++.+.. .. -..+++-++|+|++..-+...++.+...+......+.+|++|.. ..+.
T Consensus 84 ~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~ 163 (563)
T PRK06647 84 NDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLP 163 (563)
T ss_pred cCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhH
Confidence 10000 000011222222222 11 12356668999999765556677787777766667777766654 3332
Q ss_pred hh-hcCcCeEeCCCCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCCCchHHHH
Q 038751 321 RM-MESTDVISIKELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKGLPLAAKT 379 (915)
Q Consensus 321 ~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~PLai~~ 379 (915)
.. ......+++.+++.++....+.+.+...+-... .+.+..|++.++|.+..+..
T Consensus 164 ~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~id----~eAl~lLa~~s~GdlR~als 219 (563)
T PRK06647 164 ATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKYE----DEALKWIAYKSTGSVRDAYT 219 (563)
T ss_pred HHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHH
Confidence 22 223557899999999998888877643332222 24456688889998754433
No 127
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.81 E-value=0.00044 Score=77.83 Aligned_cols=153 Identities=18% Similarity=0.153 Sum_probs=86.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHhccC
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLRELNSLLEYIHTSIKEK 277 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 277 (915)
..-+.|+|+.|+|||+|++.+++.. ......+++++. ..+...+...+... .. ..++..+. .
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l--~~~~~~v~yi~~------~~f~~~~~~~l~~~-----~~----~~f~~~~~-~ 202 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHAL--RESGGKILYVRS------ELFTEHLVSAIRSG-----EM----QRFRQFYR-N 202 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHH--HHcCCCEEEeeH------HHHHHHHHHHHhcc-----hH----HHHHHHcc-c
Confidence 3568899999999999999999843 222233455542 34444555554321 11 22333333 3
Q ss_pred eEEEEEeCCCCCCccC--hhhhHHhhhc-CCCCceEEEEcCch-H--------HHhhhcCcCeEeCCCCCHHHHHHHHHH
Q 038751 278 KFFLILDDVWPDDYSK--WEPFHNCLMN-GLCGSRILVTTRKE-T--------VARMMESTDVISIKELSEQECWSLFKR 345 (915)
Q Consensus 278 ~~LlVlDdvw~~~~~~--~~~l~~~l~~-~~~gs~iivTtR~~-~--------v~~~~~~~~~~~l~~L~~~~~~~lf~~ 345 (915)
.-+|++||+....... .+.+...+.. ...|..||+||... . +.+.+.....+++.+++.++-..++.+
T Consensus 203 ~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~ 282 (445)
T PRK12422 203 VDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLER 282 (445)
T ss_pred CCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHH
Confidence 3488889985432111 2223333321 12355788888642 1 222233456899999999999999988
Q ss_pred hHcCCCCCCchhHHHHHHHHHHHhcCC
Q 038751 346 FAFSGRSPTECEQLEEIGRKIVGKCKG 372 (915)
Q Consensus 346 ~~~~~~~~~~~~~l~~~~~~i~~~c~G 372 (915)
++-..+-.-. .++..-|+..+.|
T Consensus 283 k~~~~~~~l~----~evl~~la~~~~~ 305 (445)
T PRK12422 283 KAEALSIRIE----ETALDFLIEALSS 305 (445)
T ss_pred HHHHcCCCCC----HHHHHHHHHhcCC
Confidence 7754322111 2344445555553
No 128
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.81 E-value=0.00029 Score=76.74 Aligned_cols=149 Identities=14% Similarity=0.149 Sum_probs=86.5
Q ss_pred cCccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHH
Q 038751 170 VSDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAI 249 (915)
Q Consensus 170 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 249 (915)
-.+++|.+...+.+..++... .-..++.++|++|+||||+|+.+++. .... ...++.+. .. ....+..
T Consensus 20 ~~~~~~~~~~~~~l~~~~~~~-----~~~~~lll~G~~G~GKT~la~~l~~~--~~~~---~~~i~~~~-~~-~~~i~~~ 87 (316)
T PHA02544 20 IDECILPAADKETFKSIVKKG-----RIPNMLLHSPSPGTGKTTVAKALCNE--VGAE---VLFVNGSD-CR-IDFVRNR 87 (316)
T ss_pred HHHhcCcHHHHHHHHHHHhcC-----CCCeEEEeeCcCCCCHHHHHHHHHHH--hCcc---ceEeccCc-cc-HHHHHHH
Confidence 357899999999999988632 23567888999999999999999874 2211 23334433 11 1111111
Q ss_pred HHHhhCCCCCcccHHHHHHHHHHHhccCeEEEEEeCCCCC-CccChhhhHHhhhcCCCCceEEEEcCchH-HHh-hhcCc
Q 038751 250 IEGLEGSLPNLRELNSLLEYIHTSIKEKKFFLILDDVWPD-DYSKWEPFHNCLMNGLCGSRILVTTRKET-VAR-MMEST 326 (915)
Q Consensus 250 ~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~-~~~~~~~l~~~l~~~~~gs~iivTtR~~~-v~~-~~~~~ 326 (915)
+..+... ..+.+.+-++|+||+... ..+..+.+...+.....++++|+||.... +.. .....
T Consensus 88 l~~~~~~---------------~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~ 152 (316)
T PHA02544 88 LTRFAST---------------VSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRC 152 (316)
T ss_pred HHHHHHh---------------hcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhc
Confidence 1111000 001134558899999543 22233345554555566778898887542 111 11223
Q ss_pred CeEeCCCCCHHHHHHHHHH
Q 038751 327 DVISIKELSEQECWSLFKR 345 (915)
Q Consensus 327 ~~~~l~~L~~~~~~~lf~~ 345 (915)
..+.+...+.++..+++..
T Consensus 153 ~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 153 RVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred eEEEeCCCCHHHHHHHHHH
Confidence 5677777888877666543
No 129
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.81 E-value=0.00015 Score=80.54 Aligned_cols=181 Identities=13% Similarity=0.164 Sum_probs=98.5
Q ss_pred ccCccccchHHHHHHHHHHhccccc-------ccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCC
Q 038751 169 NVSDVRGRDEEKNILKRKLLCESNE-------ERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFD 241 (915)
Q Consensus 169 ~~~~~~Gr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 241 (915)
...++.|++++++++.+.+..+-.. +-...+-|.++|++|+|||++|+.+++. .... |+.++.
T Consensus 129 ~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~--~~~~-----~i~v~~--- 198 (389)
T PRK03992 129 TYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNAT-----FIRVVG--- 198 (389)
T ss_pred CHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHH--hCCC-----EEEeeh---
Confidence 3457899999999998876432110 1124566899999999999999999883 2222 233321
Q ss_pred HHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHhccCeEEEEEeCCCCC-----------CccChhhhHHhhhc-----CC
Q 038751 242 EFRIAKAIIEGLEGSLPNLRELNSLLEYIHTSIKEKKFFLILDDVWPD-----------DYSKWEPFHNCLMN-----GL 305 (915)
Q Consensus 242 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~-----------~~~~~~~l~~~l~~-----~~ 305 (915)
.++ .....+. ....+...+...-...+.+|++||+..- +......+...+.. ..
T Consensus 199 -~~l----~~~~~g~-----~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~ 268 (389)
T PRK03992 199 -SEL----VQKFIGE-----GARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPR 268 (389)
T ss_pred -HHH----hHhhccc-----hHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCC
Confidence 111 1111110 1111112222222356789999998431 01112223333321 12
Q ss_pred CCceEEEEcCchHHHh-h-h---cCcCeEeCCCCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCCCc
Q 038751 306 CGSRILVTTRKETVAR-M-M---ESTDVISIKELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKGLP 374 (915)
Q Consensus 306 ~gs~iivTtR~~~v~~-~-~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~P 374 (915)
.+..||.||....... . . .....+.+.+.+.++-.++|+.+.....- ...-.+ ..+++.+.|.-
T Consensus 269 ~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~-~~~~~~----~~la~~t~g~s 337 (389)
T PRK03992 269 GNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNL-ADDVDL----EELAELTEGAS 337 (389)
T ss_pred CCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCC-CCcCCH----HHHHHHcCCCC
Confidence 3556777777543221 1 1 12457999999999999999887643221 111223 34556666643
No 130
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.81 E-value=0.00047 Score=80.44 Aligned_cols=198 Identities=15% Similarity=0.207 Sum_probs=111.3
Q ss_pred CccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 038751 171 SDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAII 250 (915)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 250 (915)
.+++|.+..++.+...+... .-.+.+.++|+.|+||||+|+.+.+...-....+ ...++.-...+.|.
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~-----~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~-------~~~c~~c~~c~~i~ 83 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTG-----RVAHAFLFTGARGVGKTSTARILAKALNCEQGLT-------AEPCNVCPPCVEIT 83 (576)
T ss_pred HHccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCC-------CCCCCccHHHHHHh
Confidence 47899998889998888543 1246678999999999999988876321111000 00111111111111
Q ss_pred HHh-------hC-CCCCcccHHHHHHHHHHH-hccCeEEEEEeCCCCCCccChhhhHHhhhcCCCCceEEEEcC-chHHH
Q 038751 251 EGL-------EG-SLPNLRELNSLLEYIHTS-IKEKKFFLILDDVWPDDYSKWEPFHNCLMNGLCGSRILVTTR-KETVA 320 (915)
Q Consensus 251 ~~l-------~~-~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR-~~~v~ 320 (915)
..- .+ ......+..++.+.+... ..+++-++|+|++..-+....+.+...+......+.+|++|. ...+.
T Consensus 84 ~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~ 163 (576)
T PRK14965 84 EGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVP 163 (576)
T ss_pred cCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhh
Confidence 100 00 001111222222222111 124555899999976555667778888877666777666554 34444
Q ss_pred hh-hcCcCeEeCCCCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCCCc-hHHHHHHhHh
Q 038751 321 RM-MESTDVISIKELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKGLP-LAAKTIGSLL 384 (915)
Q Consensus 321 ~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~P-Lai~~~~~~l 384 (915)
.. ......+++.+++.++....+...+-..+-... .+....|++.++|.. .|+..+-.++
T Consensus 164 ~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i~----~~al~~la~~a~G~lr~al~~Ldqli 225 (576)
T PRK14965 164 ITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISIS----DAALALVARKGDGSMRDSLSTLDQVL 225 (576)
T ss_pred HHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 32 233568899999999988888765433222122 234566888898865 4555554443
No 131
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.80 E-value=0.00034 Score=74.13 Aligned_cols=133 Identities=16% Similarity=0.120 Sum_probs=72.8
Q ss_pred EEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHhccCeE
Q 038751 200 IISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLRELNSLLEYIHTSIKEKKF 279 (915)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~ 279 (915)
-+.++|++|+||||+|+.++......+.....-|+.++. .+ ++..+.+.. .......+.+. ..-
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~~----l~~~~~g~~-----~~~~~~~~~~a---~~g 123 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----DD----LVGQYIGHT-----APKTKEILKRA---MGG 123 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----HH----HhHhhcccc-----hHHHHHHHHHc---cCc
Confidence 478999999999999977766321112222223454442 12 222222211 11122223322 235
Q ss_pred EEEEeCCCCC---------CccChhhhHHhhhcCCCCceEEEEcCchHHHhhh--------cCcCeEeCCCCCHHHHHHH
Q 038751 280 FLILDDVWPD---------DYSKWEPFHNCLMNGLCGSRILVTTRKETVARMM--------ESTDVISIKELSEQECWSL 342 (915)
Q Consensus 280 LlVlDdvw~~---------~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~--------~~~~~~~l~~L~~~~~~~l 342 (915)
+|++|++..- ..+.++.+...+.....+.+||+++......... .....+++++++.+|...+
T Consensus 124 vL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I 203 (284)
T TIGR02880 124 VLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVI 203 (284)
T ss_pred EEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHH
Confidence 8899998521 0122344555555555566777776544322211 1135799999999999999
Q ss_pred HHHhHc
Q 038751 343 FKRFAF 348 (915)
Q Consensus 343 f~~~~~ 348 (915)
+...+-
T Consensus 204 ~~~~l~ 209 (284)
T TIGR02880 204 AGLMLK 209 (284)
T ss_pred HHHHHH
Confidence 888753
No 132
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=3.5e-07 Score=91.40 Aligned_cols=131 Identities=17% Similarity=0.159 Sum_probs=85.7
Q ss_pred ceeEcCccCCCChhhHhHhhccCCCCCCceEEEEecCCCCchhhhhhhhhHHHHhhHHHHHhhcCCCCCcceEEEeeeCC
Q 038751 663 FLQISGLGNVTDADEAKNAHLEKKKNLIDLILIFNEREESDDEKASEEMNEEKEAKHEAVCEALRPPPDIKSLEIMVFKG 742 (915)
Q Consensus 663 ~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 742 (915)
.+.++.+.++.. .+....+.+|+.|.+|+|+||.... . .......+. -++|..|+++||.-
T Consensus 238 ~lnlsm~sG~t~--n~~~ll~~scs~L~~LNlsWc~l~~----------~-----~Vtv~V~hi--se~l~~LNlsG~rr 298 (419)
T KOG2120|consen 238 RLNLSMCSGFTE--NALQLLLSSCSRLDELNLSWCFLFT----------E-----KVTVAVAHI--SETLTQLNLSGYRR 298 (419)
T ss_pred eeccccccccch--hHHHHHHHhhhhHhhcCchHhhccc----------h-----hhhHHHhhh--chhhhhhhhhhhHh
Confidence 455555554433 3344557889999999999997431 0 111111122 36799999999864
Q ss_pred CCCCCccc----CccCccEEEEcCcCCCCC--CCCCCCCCCcceeeccccccceEeCccccCCcccccccccccCCCccc
Q 038751 743 RTPSNWIG----SLNKLKMLTLNSFVKCEI--MPPLGKLPSLEILRIWHMRSVKRVGDEFLGMEISDHIHIHGTSSSSSV 816 (915)
Q Consensus 743 ~~~p~~~~----~l~~L~~L~L~~~~~~~~--l~~l~~Lp~L~~L~L~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~ 816 (915)
.-.-+-+. .+++|..|+|++|..++. +-.+-+++.|++|.++.|..+ +|..+.. +
T Consensus 299 nl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~-----------------l 359 (419)
T KOG2120|consen 299 NLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI--IPETLLE-----------------L 359 (419)
T ss_pred hhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC--ChHHeee-----------------e
Confidence 32222222 789999999999986653 334678999999999999843 2322222 3
Q ss_pred ccCcccceeeecCcc
Q 038751 817 IAFPKLQKLELTGMD 831 (915)
Q Consensus 817 ~~f~~L~~L~l~~~~ 831 (915)
...|+|.+|++.+|-
T Consensus 360 ~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 360 NSKPSLVYLDVFGCV 374 (419)
T ss_pred ccCcceEEEEecccc
Confidence 478889999988874
No 133
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.77 E-value=0.0019 Score=69.33 Aligned_cols=196 Identities=13% Similarity=0.122 Sum_probs=112.9
Q ss_pred CccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhccccc-------------ccCCCeEEEEEeC
Q 038751 171 SDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDV-------------IENFDKRIWVCVS 237 (915)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-------------~~~F~~~~wv~vs 237 (915)
.+++|.+..++.+...+.... -.+...++|+.|+||+++|..+.+..-- ...++-..|+.-.
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~r-----l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~ 78 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNR-----IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPT 78 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecc
Confidence 468999999999999885431 2478999999999999999776543110 1122333444211
Q ss_pred CCCCHHHHHHHHHHHhh--CCCCCcccHHHHHHHHHHHh-----ccCeEEEEEeCCCCCCccChhhhHHhhhcCCCCceE
Q 038751 238 DPFDEFRIAKAIIEGLE--GSLPNLRELNSLLEYIHTSI-----KEKKFFLILDDVWPDDYSKWEPFHNCLMNGLCGSRI 310 (915)
Q Consensus 238 ~~~~~~~~~~~i~~~l~--~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~i 310 (915)
...+-..+...-++..+ ......-.++++ +.+.+.+ .+++-++|+|++...+....+.+...+.... .+.+
T Consensus 79 ~~~~g~~~~~~~~~~~~~~~~~~~~I~id~i-r~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~f 156 (314)
T PRK07399 79 YQHQGKLITASEAEEAGLKRKAPPQIRLEQI-REIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTL 156 (314)
T ss_pred ccccccccchhhhhhccccccccccCcHHHH-HHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeE
Confidence 00000000001111111 111111122332 2233333 3566789999996666667778888887655 4456
Q ss_pred EEEcCch-HHHhh-hcCcCeEeCCCCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCCCchHHHHH
Q 038751 311 LVTTRKE-TVARM-MESTDVISIKELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKGLPLAAKTI 380 (915)
Q Consensus 311 ivTtR~~-~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~PLai~~~ 380 (915)
|++|.+. .+... ......+++.++++++..+.+.+...... .. .....++..++|.|..+...
T Consensus 157 ILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~---~~----~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 157 ILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI---LN----INFPELLALAQGSPGAAIAN 221 (314)
T ss_pred EEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc---ch----hHHHHHHHHcCCCHHHHHHH
Confidence 6555543 33222 23467999999999999999988642111 01 11356788899999766543
No 134
>PRK06620 hypothetical protein; Validated
Probab=97.77 E-value=0.00031 Score=70.93 Aligned_cols=135 Identities=14% Similarity=0.043 Sum_probs=79.4
Q ss_pred EEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHhccCe
Q 038751 199 QIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLRELNSLLEYIHTSIKEKK 278 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 278 (915)
+.+.|+|++|+|||+|++.+++... . .++. ..+.. + +.. ...
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~--~-----~~~~--~~~~~---------------------~-------~~~-~~~ 86 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN--A-----YIIK--DIFFN---------------------E-------EIL-EKY 86 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC--C-----EEcc--hhhhc---------------------h-------hHH-hcC
Confidence 6689999999999999999877431 1 1111 00000 0 011 123
Q ss_pred EEEEEeCCCCCCccChhhhHHhhhc-CCCCceEEEEcCchH-------HHhhhcCcCeEeCCCCCHHHHHHHHHHhHcCC
Q 038751 279 FFLILDDVWPDDYSKWEPFHNCLMN-GLCGSRILVTTRKET-------VARMMESTDVISIKELSEQECWSLFKRFAFSG 350 (915)
Q Consensus 279 ~LlVlDdvw~~~~~~~~~l~~~l~~-~~~gs~iivTtR~~~-------v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~ 350 (915)
-++++||++.. .. ..+...+.. ...|..||+|++.+. ..+.+....+++++++++++-..++.+.+...
T Consensus 87 d~lliDdi~~~--~~-~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~ 163 (214)
T PRK06620 87 NAFIIEDIENW--QE-PALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSIS 163 (214)
T ss_pred CEEEEeccccc--hH-HHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHc
Confidence 47889999521 10 122222221 145678999998543 22334446689999999999888888776422
Q ss_pred CCCCchhHHHHHHHHHHHhcCCCchHHH
Q 038751 351 RSPTECEQLEEIGRKIVGKCKGLPLAAK 378 (915)
Q Consensus 351 ~~~~~~~~l~~~~~~i~~~c~G~PLai~ 378 (915)
+- .. -+++..-|++.+.|.--.+.
T Consensus 164 ~l-~l---~~ev~~~L~~~~~~d~r~l~ 187 (214)
T PRK06620 164 SV-TI---SRQIIDFLLVNLPREYSKII 187 (214)
T ss_pred CC-CC---CHHHHHHHHHHccCCHHHHH
Confidence 11 11 13566678888877655543
No 135
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.77 E-value=0.00059 Score=73.54 Aligned_cols=97 Identities=9% Similarity=0.085 Sum_probs=68.2
Q ss_pred cCeEEEEEeCCCCCCccChhhhHHhhhcCCCCceEEEEcCchH-HHhh-hcCcCeEeCCCCCHHHHHHHHHHhHcCCCCC
Q 038751 276 EKKFFLILDDVWPDDYSKWEPFHNCLMNGLCGSRILVTTRKET-VARM-MESTDVISIKELSEQECWSLFKRFAFSGRSP 353 (915)
Q Consensus 276 ~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~-v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 353 (915)
+++-++|+|++...+.+..+.+...+.....++.+|+||.+.. +... ......+.+.+++.+++.+.+...... .
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~-~-- 181 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPE-S-- 181 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhccc-C--
Confidence 4444667899987777788888888887777788888887753 2222 233568999999999999988765311 1
Q ss_pred CchhHHHHHHHHHHHhcCCCchHHHHH
Q 038751 354 TECEQLEEIGRKIVGKCKGLPLAAKTI 380 (915)
Q Consensus 354 ~~~~~l~~~~~~i~~~c~G~PLai~~~ 380 (915)
. .+.+..++..++|.|..+..+
T Consensus 182 -~----~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 182 -D----ERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred -C----hHHHHHHHHHcCCCHHHHHHH
Confidence 1 123456788999999866554
No 136
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.76 E-value=0.00055 Score=77.25 Aligned_cols=159 Identities=15% Similarity=0.158 Sum_probs=94.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcccccccCC-C-eEEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHhc
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYNDKDVIENF-D-KRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLRELNSLLEYIHTSIK 275 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~-~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 275 (915)
..-+.|+|.+|+|||+|++.+++. ..... . .++|++. .++...+...+... ..+ .+.+.+.
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~--l~~~~~~~~v~yi~~------~~f~~~~~~~~~~~-----~~~----~f~~~~~ 192 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYITS------EKFLNDLVDSMKEG-----KLN----EFREKYR 192 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHH--HHHhCCCCeEEEEEH------HHHHHHHHHHHhcc-----cHH----HHHHHHH
Confidence 345899999999999999999984 33322 2 4556654 34566665555321 122 2333333
Q ss_pred cCeEEEEEeCCCCC-CccCh-hhhHHhhhc-CCCCceEEEEcC-chHH--------HhhhcCcCeEeCCCCCHHHHHHHH
Q 038751 276 EKKFFLILDDVWPD-DYSKW-EPFHNCLMN-GLCGSRILVTTR-KETV--------ARMMESTDVISIKELSEQECWSLF 343 (915)
Q Consensus 276 ~k~~LlVlDdvw~~-~~~~~-~~l~~~l~~-~~~gs~iivTtR-~~~v--------~~~~~~~~~~~l~~L~~~~~~~lf 343 (915)
.+.-+|++||+... +...+ +.+...+.. ...|..||+||. .+.- .+.+....++++++.+.+.-.+++
T Consensus 193 ~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL 272 (440)
T PRK14088 193 KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIA 272 (440)
T ss_pred hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHH
Confidence 34568999999632 11112 233333322 123457888885 3321 112333558899999999999999
Q ss_pred HHhHcCCCCCCchhHHHHHHHHHHHhcCCCchHH
Q 038751 344 KRFAFSGRSPTECEQLEEIGRKIVGKCKGLPLAA 377 (915)
Q Consensus 344 ~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~PLai 377 (915)
++++....-.- + .++...|++.+.|..-.+
T Consensus 273 ~~~~~~~~~~l-~---~ev~~~Ia~~~~~~~R~L 302 (440)
T PRK14088 273 RKMLEIEHGEL-P---EEVLNFVAENVDDNLRRL 302 (440)
T ss_pred HHHHHhcCCCC-C---HHHHHHHHhccccCHHHH
Confidence 98875322211 1 356677888887765444
No 137
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=0.00079 Score=78.64 Aligned_cols=133 Identities=19% Similarity=0.295 Sum_probs=86.5
Q ss_pred ccccchHHHHHHHHHHhcccc---cccCceEEEEEEecCCCcHHHHHHHHhcccccccCC---CeEEEEEeCCCCCHHHH
Q 038751 172 DVRGRDEEKNILKRKLLCESN---EERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENF---DKRIWVCVSDPFDEFRI 245 (915)
Q Consensus 172 ~~~Gr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~vs~~~~~~~~ 245 (915)
.++|-+..++.+.+.+..... +.+....+...+|+.|||||.||+.+... -| +..+-+..|.. .
T Consensus 492 rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~-----Lfg~e~aliR~DMSEy-----~ 561 (786)
T COG0542 492 RVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEA-----LFGDEQALIRIDMSEY-----M 561 (786)
T ss_pred ceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHH-----hcCCCccceeechHHH-----H
Confidence 588999999998888865432 23556778899999999999999888762 24 22333333331 1
Q ss_pred HHHHHHHhhCCCCCcccHHHHHHHHHHHhccCeE-EEEEeCCCCCCccChhhhHHhhhcCC-----------CCceEEEE
Q 038751 246 AKAIIEGLEGSLPNLRELNSLLEYIHTSIKEKKF-FLILDDVWPDDYSKWEPFHNCLMNGL-----------CGSRILVT 313 (915)
Q Consensus 246 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~-LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iivT 313 (915)
-+.-+..|-+..++...-++ ...|-+.++.++| +|.||++.-.+++..+.|...|..+. +.+-||+|
T Consensus 562 EkHsVSrLIGaPPGYVGyee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImT 640 (786)
T COG0542 562 EKHSVSRLIGAPPGYVGYEE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMT 640 (786)
T ss_pred HHHHHHHHhCCCCCCceecc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEe
Confidence 22334455565555433232 3345556667888 77789997777777888888777652 24566777
Q ss_pred cC
Q 038751 314 TR 315 (915)
Q Consensus 314 tR 315 (915)
|-
T Consensus 641 SN 642 (786)
T COG0542 641 SN 642 (786)
T ss_pred cc
Confidence 75
No 138
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.72 E-value=0.0012 Score=75.77 Aligned_cols=157 Identities=11% Similarity=0.127 Sum_probs=92.4
Q ss_pred EEEEEEecCCCcHHHHHHHHhcccccccCC--CeEEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHhcc
Q 038751 199 QIISLVGMGGIGKTTLAQFAYNDKDVIENF--DKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLRELNSLLEYIHTSIKE 276 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 276 (915)
..+.|+|..|+|||.|++.+++. ....+ ..+++++. .++...+...+... .. ..+.+.+.+
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~--a~~~~~g~~V~Yita------eef~~el~~al~~~-----~~----~~f~~~y~~ 377 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHY--ARRLYPGTRVRYVSS------EEFTNEFINSIRDG-----KG----DSFRRRYRE 377 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEeeH------HHHHHHHHHHHHhc-----cH----HHHHHHhhc
Confidence 34899999999999999999984 32222 23455543 34444544443221 11 123333332
Q ss_pred CeEEEEEeCCCCCCc-cChh-hhHHhhhcC-CCCceEEEEcCch---------HHHhhhcCcCeEeCCCCCHHHHHHHHH
Q 038751 277 KKFFLILDDVWPDDY-SKWE-PFHNCLMNG-LCGSRILVTTRKE---------TVARMMESTDVISIKELSEQECWSLFK 344 (915)
Q Consensus 277 k~~LlVlDdvw~~~~-~~~~-~l~~~l~~~-~~gs~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~ 344 (915)
.=+|||||+..... ..|. .|...+... ..|..|||||+.. .+.+.+...-++.+++.+.+.-.+++.
T Consensus 378 -~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~ 456 (617)
T PRK14086 378 -MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILR 456 (617)
T ss_pred -CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHH
Confidence 24788999964321 2232 233333322 3356788888853 223334556789999999999999999
Q ss_pred HhHcCCCCCCchhHHHHHHHHHHHhcCCCchHH
Q 038751 345 RFAFSGRSPTECEQLEEIGRKIVGKCKGLPLAA 377 (915)
Q Consensus 345 ~~~~~~~~~~~~~~l~~~~~~i~~~c~G~PLai 377 (915)
+++....-... ++++.-|++++.+..-.+
T Consensus 457 kka~~r~l~l~----~eVi~yLa~r~~rnvR~L 485 (617)
T PRK14086 457 KKAVQEQLNAP----PEVLEFIASRISRNIREL 485 (617)
T ss_pred HHHHhcCCCCC----HHHHHHHHHhccCCHHHH
Confidence 88754332222 355666777776654443
No 139
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.72 E-value=0.0014 Score=76.18 Aligned_cols=192 Identities=17% Similarity=0.166 Sum_probs=108.7
Q ss_pred CccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 038751 171 SDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAII 250 (915)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 250 (915)
.+++|.+...+.+.+++.... -.+.+.++|+.|+||||+|+.+.+...-...- ...+++.-...+.|.
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~-------~~~pC~~C~~C~~i~ 83 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGK-----ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPP-------DGEPCNECEICKAIT 83 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCC-------CCCCCCccHHHHHHh
Confidence 479999999999999886532 34667889999999999998886531111000 001111112222221
Q ss_pred HHhhCC-----CCCcccHHHHHHHHHHH----hccCeEEEEEeCCCCCCccChhhhHHhhhcCCCCceEEEEcCc-hHHH
Q 038751 251 EGLEGS-----LPNLRELNSLLEYIHTS----IKEKKFFLILDDVWPDDYSKWEPFHNCLMNGLCGSRILVTTRK-ETVA 320 (915)
Q Consensus 251 ~~l~~~-----~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~-~~v~ 320 (915)
.....+ .......+++.+.+... ..++.-++|+|++..-....++.+...+........+|++|.. ..+.
T Consensus 84 ~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~ 163 (559)
T PRK05563 84 NGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIP 163 (559)
T ss_pred cCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCc
Confidence 111000 00011122222222111 1356668899999765555677777777665556666655543 3332
Q ss_pred hh-hcCcCeEeCCCCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCCCchHHH
Q 038751 321 RM-MESTDVISIKELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKGLPLAAK 378 (915)
Q Consensus 321 ~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~PLai~ 378 (915)
.. ......+++.+++.++....+...+-..+-... .+.+..|++.++|.+..+.
T Consensus 164 ~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~----~~al~~ia~~s~G~~R~al 218 (559)
T PRK05563 164 ATILSRCQRFDFKRISVEDIVERLKYILDKEGIEYE----DEALRLIARAAEGGMRDAL 218 (559)
T ss_pred HHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHH
Confidence 22 223567889999999998888876643221122 2445667888888776443
No 140
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.68 E-value=4.9e-06 Score=87.40 Aligned_cols=158 Identities=17% Similarity=0.220 Sum_probs=97.6
Q ss_pred CCCCCcceEEEeeeCCC-CCCCc-cc-CccCccEEEEcCcCCCCCCC--CC-CCCCCcceeeccccccceEeCccccCCc
Q 038751 727 RPPPDIKSLEIMVFKGR-TPSNW-IG-SLNKLKMLTLNSFVKCEIMP--PL-GKLPSLEILRIWHMRSVKRVGDEFLGME 800 (915)
Q Consensus 727 ~~~~~L~~L~l~~~~~~-~~p~~-~~-~l~~L~~L~L~~~~~~~~l~--~l-~~Lp~L~~L~L~~~~~l~~~~~~~~~~~ 800 (915)
..+..|+.|..+++... ..+-| ++ ..++|+.|.++.|....... .+ .+.+.|+.+++..|.....- .+...
T Consensus 291 ~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~--tL~sl- 367 (483)
T KOG4341|consen 291 CGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG--TLASL- 367 (483)
T ss_pred hhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh--hHhhh-
Confidence 34556677777666532 11211 12 56788888888887544321 22 35677888888776532211 12222
Q ss_pred ccccccccccCCCcccccCcccceeeecCcccccccccC--CCCcccCcccceeecccCccccC-CCcCCCCCCCcCeEe
Q 038751 801 ISDHIHIHGTSSSSSVIAFPKLQKLELTGMDELEEWDFG--NDDITIMPHIKSLYITYCEKLKS-LPELLLRSTTLESLT 877 (915)
Q Consensus 801 ~l~~l~l~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~--~~~~~~lp~L~~L~l~~c~~L~~-lp~~l~~l~~L~~L~ 877 (915)
....|.|+.|.++.|.....-.+. ...-.++..|+.|.+++||.+.. .-+.+..++.|+.++
T Consensus 368 ---------------s~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~ 432 (483)
T KOG4341|consen 368 ---------------SRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIE 432 (483)
T ss_pred ---------------ccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceee
Confidence 237889999999887654433110 11123678899999999987654 234566788999999
Q ss_pred EcCCcchhHhhccCCCCCcccccCCCcceec
Q 038751 878 IFGVPIVQESFKRRTEKDWSKISHIPNIKIQ 908 (915)
Q Consensus 878 l~~c~~l~~~~~~~~~~~~~~i~~ip~v~~~ 908 (915)
+.+|..+.+.-.. +..+|+|++.++
T Consensus 433 l~~~q~vtk~~i~------~~~~~lp~i~v~ 457 (483)
T KOG4341|consen 433 LIDCQDVTKEAIS------RFATHLPNIKVH 457 (483)
T ss_pred eechhhhhhhhhH------HHHhhCccceeh
Confidence 9999887553211 346888888876
No 141
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.67 E-value=0.00037 Score=84.23 Aligned_cols=155 Identities=21% Similarity=0.240 Sum_probs=85.3
Q ss_pred CccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccc---cccCC-CeEEEEEeCCCCCHHHHH
Q 038751 171 SDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKD---VIENF-DKRIWVCVSDPFDEFRIA 246 (915)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~---~~~~F-~~~~wv~vs~~~~~~~~~ 246 (915)
+.++||+++++++++.|.... ..-+.++|++|+|||++|+.++.... +...+ ...+|. ++ ...+.
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~------~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~-~~----~~~l~ 250 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRK------KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS-LD----MGSLL 250 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCC------CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE-ec----HHHHh
Confidence 368999999999999996542 23467999999999999998887421 11111 233442 11 11111
Q ss_pred HHHHHHhhCCCCCcccHHHHHHHHHHHh-ccCeEEEEEeCCCCCC---------ccChhhhHHhhhcCCCCc-eEEEEcC
Q 038751 247 KAIIEGLEGSLPNLRELNSLLEYIHTSI-KEKKFFLILDDVWPDD---------YSKWEPFHNCLMNGLCGS-RILVTTR 315 (915)
Q Consensus 247 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdvw~~~---------~~~~~~l~~~l~~~~~gs-~iivTtR 315 (915)
.+.. ...+.++....+.+.+ +.++.+|++|+++.-. .+.-+.+...+. .|. ++|-+|.
T Consensus 251 -------a~~~-~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~---~g~i~~IgaTt 319 (731)
T TIGR02639 251 -------AGTK-YRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALS---SGKLRCIGSTT 319 (731)
T ss_pred -------hhcc-ccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHh---CCCeEEEEecC
Confidence 0000 0012222222222222 3467899999985311 011122333332 333 4555555
Q ss_pred chHHHh-------hhcCcCeEeCCCCCHHHHHHHHHHhH
Q 038751 316 KETVAR-------MMESTDVISIKELSEQECWSLFKRFA 347 (915)
Q Consensus 316 ~~~v~~-------~~~~~~~~~l~~L~~~~~~~lf~~~~ 347 (915)
.++... .......+++++++.++..++++...
T Consensus 320 ~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 320 YEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 432211 11224589999999999999998643
No 142
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.67 E-value=0.0013 Score=75.17 Aligned_cols=158 Identities=16% Similarity=0.163 Sum_probs=93.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcccccccCC--CeEEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHhc
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYNDKDVIENF--DKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLRELNSLLEYIHTSIK 275 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 275 (915)
..-+.|+|..|+|||+|++.+++. ....+ -.+++++.. ++...+...+... ..+ .+.+.++
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~v~yi~~~------~~~~~~~~~~~~~-----~~~----~~~~~~~ 210 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNY--ILEKNPNAKVVYVTSE------KFTNDFVNALRNN-----TME----EFKEKYR 210 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEEEHH------HHHHHHHHHHHcC-----cHH----HHHHHHh
Confidence 356899999999999999999984 33333 234555443 3344444444221 112 2333333
Q ss_pred cCeEEEEEeCCCCCCccC--hhhhHHhhhc-CCCCceEEEEcCchH---------HHhhhcCcCeEeCCCCCHHHHHHHH
Q 038751 276 EKKFFLILDDVWPDDYSK--WEPFHNCLMN-GLCGSRILVTTRKET---------VARMMESTDVISIKELSEQECWSLF 343 (915)
Q Consensus 276 ~k~~LlVlDdvw~~~~~~--~~~l~~~l~~-~~~gs~iivTtR~~~---------v~~~~~~~~~~~l~~L~~~~~~~lf 343 (915)
+.-+||+||++...... .+.+...+.. ...|..||+||.... +.+.+....++++++.+.++-..++
T Consensus 211 -~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il 289 (450)
T PRK00149 211 -SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAIL 289 (450)
T ss_pred -cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHH
Confidence 34489999995421111 1233333322 123556888887532 1223334568999999999999999
Q ss_pred HHhHcCCCCCCchhHHHHHHHHHHHhcCCCchHH
Q 038751 344 KRFAFSGRSPTECEQLEEIGRKIVGKCKGLPLAA 377 (915)
Q Consensus 344 ~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~PLai 377 (915)
.+++....- ..+ +++...|++.+.|..-.+
T Consensus 290 ~~~~~~~~~-~l~---~e~l~~ia~~~~~~~R~l 319 (450)
T PRK00149 290 KKKAEEEGI-DLP---DEVLEFIAKNITSNVREL 319 (450)
T ss_pred HHHHHHcCC-CCC---HHHHHHHHcCcCCCHHHH
Confidence 998754221 111 355677888888877654
No 143
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.66 E-value=0.00047 Score=84.37 Aligned_cols=154 Identities=19% Similarity=0.182 Sum_probs=85.8
Q ss_pred CccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccc---cccCC-CeEEEEEeCCCCCHHHHH
Q 038751 171 SDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKD---VIENF-DKRIWVCVSDPFDEFRIA 246 (915)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~---~~~~F-~~~~wv~vs~~~~~~~~~ 246 (915)
..++||+++++++++.|.... ..-+.++|++|+|||++|+.++.... +.... ...+|. + +...+
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~------~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l- 246 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRT------KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLL- 246 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccc------cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHH-
Confidence 358999999999999997542 23457999999999999988877421 11111 234452 1 11111
Q ss_pred HHHHHHhhCCCCCcccHHHHHH-HHHHHhccCeEEEEEeCCCCC-------CccCh-hhhHHhhhcCCCCceEEEEcCch
Q 038751 247 KAIIEGLEGSLPNLRELNSLLE-YIHTSIKEKKFFLILDDVWPD-------DYSKW-EPFHNCLMNGLCGSRILVTTRKE 317 (915)
Q Consensus 247 ~~i~~~l~~~~~~~~~~~~~~~-~l~~~l~~k~~LlVlDdvw~~-------~~~~~-~~l~~~l~~~~~gs~iivTtR~~ 317 (915)
+.+.... .+.++... .+.+.-..++.+|++|+++.- ..... +.+...+..+ .-++|.+|..+
T Consensus 247 ------~ag~~~~-ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg--~l~~IgaTt~~ 317 (821)
T CHL00095 247 ------LAGTKYR-GEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARG--ELQCIGATTLD 317 (821)
T ss_pred ------hccCCCc-cHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCC--CcEEEEeCCHH
Confidence 1111111 12222222 222222356889999998521 00111 1233223221 24566666655
Q ss_pred HHHhh-------hcCcCeEeCCCCCHHHHHHHHHH
Q 038751 318 TVARM-------MESTDVISIKELSEQECWSLFKR 345 (915)
Q Consensus 318 ~v~~~-------~~~~~~~~l~~L~~~~~~~lf~~ 345 (915)
+.... .....++.+...+.++...++..
T Consensus 318 ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~ 352 (821)
T CHL00095 318 EYRKHIEKDPALERRFQPVYVGEPSVEETIEILFG 352 (821)
T ss_pred HHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHH
Confidence 44221 12245788999999998888764
No 144
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.63 E-value=0.00025 Score=65.90 Aligned_cols=96 Identities=23% Similarity=0.137 Sum_probs=52.7
Q ss_pred EEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHhccC-eE
Q 038751 201 ISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLRELNSLLEYIHTSIKEK-KF 279 (915)
Q Consensus 201 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k-~~ 279 (915)
|.|+|++|+||||+|+.++++. . + ..+.++.+. +... ........+...+.+.-+.. +.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l--~--~-~~~~i~~~~--------------~~~~-~~~~~~~~i~~~~~~~~~~~~~~ 60 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL--G--F-PFIEIDGSE--------------LISS-YAGDSEQKIRDFFKKAKKSAKPC 60 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT--T--S-EEEEEETTH--------------HHTS-STTHHHHHHHHHHHHHHHTSTSE
T ss_pred CEEECcCCCCeeHHHHHHHhhc--c--c-ccccccccc--------------cccc-cccccccccccccccccccccce
Confidence 5799999999999999999853 2 1 123444332 1100 11122233333344433333 89
Q ss_pred EEEEeCCCCCCccC-----------hhhhHHhhhcCCC---CceEEEEcCc
Q 038751 280 FLILDDVWPDDYSK-----------WEPFHNCLMNGLC---GSRILVTTRK 316 (915)
Q Consensus 280 LlVlDdvw~~~~~~-----------~~~l~~~l~~~~~---gs~iivTtR~ 316 (915)
+|++||+..-.... ...+...+..... +..||.||..
T Consensus 61 vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~ 111 (132)
T PF00004_consen 61 VLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNS 111 (132)
T ss_dssp EEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESS
T ss_pred eeeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCC
Confidence 99999995422222 3344455554332 3466667765
No 145
>PRK08116 hypothetical protein; Validated
Probab=97.60 E-value=0.00029 Score=73.81 Aligned_cols=104 Identities=28% Similarity=0.262 Sum_probs=60.8
Q ss_pred EEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHhccCe
Q 038751 199 QIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLRELNSLLEYIHTSIKEKK 278 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 278 (915)
..+.++|..|+|||+||..+++.. ..+-..++++++ .+++..+........ .....+ +.+.+.+-.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l--~~~~~~v~~~~~------~~ll~~i~~~~~~~~--~~~~~~----~~~~l~~~d 180 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANEL--IEKGVPVIFVNF------PQLLNRIKSTYKSSG--KEDENE----IIRSLVNAD 180 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH--HHcCCeEEEEEH------HHHHHHHHHHHhccc--cccHHH----HHHHhcCCC
Confidence 358899999999999999999953 223334566653 345555544443211 111222 223344334
Q ss_pred EEEEEeCCCCCCccChhh--hHHhhhcC-CCCceEEEEcCch
Q 038751 279 FFLILDDVWPDDYSKWEP--FHNCLMNG-LCGSRILVTTRKE 317 (915)
Q Consensus 279 ~LlVlDdvw~~~~~~~~~--l~~~l~~~-~~gs~iivTtR~~ 317 (915)
||||||+..+....|.. +...+... ..|..+|+||...
T Consensus 181 -lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 181 -LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred -EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 89999996544445544 33333322 3566799999753
No 146
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.60 E-value=2.7e-05 Score=87.83 Aligned_cols=146 Identities=21% Similarity=0.266 Sum_probs=106.8
Q ss_pred CCcceEEEeeeCCCCCCCcccCccCccEEEEcCcCCCCCCCCC-CCCCCcceeeccccccceEeCccccCCccccccccc
Q 038751 730 PDIKSLEIMVFKGRTPSNWIGSLNKLKMLTLNSFVKCEIMPPL-GKLPSLEILRIWHMRSVKRVGDEFLGMEISDHIHIH 808 (915)
Q Consensus 730 ~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l-~~Lp~L~~L~L~~~~~l~~~~~~~~~~~~l~~l~l~ 808 (915)
++|+.|++.++....+|..+..+++|+.|++++|... .+|.. +.+++|+.|+++++. +..++........+..+.++
T Consensus 140 ~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~ 217 (394)
T COG4886 140 SNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNK-ISDLPPEIELLSALEELDLS 217 (394)
T ss_pred hhcccccccccchhhhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCc-cccCchhhhhhhhhhhhhhc
Confidence 3899999999998888877889999999999988544 44444 488999999998876 77787765444557778888
Q ss_pred ccCC---CcccccCcccceeeecCcccccccccCCCCcccCcccceeecccCccccCCCcCCCCCCCcCeEeEcCCcc
Q 038751 809 GTSS---SSSVIAFPKLQKLELTGMDELEEWDFGNDDITIMPHIKSLYITYCEKLKSLPELLLRSTTLESLTIFGVPI 883 (915)
Q Consensus 809 ~~~~---~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~lp~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~c~~ 883 (915)
+|.. +.....+.++..|.+.+.. +... ...++.+++|+.|++++| .+..++. +..+.+|+.|++++...
T Consensus 218 ~N~~~~~~~~~~~~~~l~~l~l~~n~-~~~~---~~~~~~l~~l~~L~~s~n-~i~~i~~-~~~~~~l~~L~~s~n~~ 289 (394)
T COG4886 218 NNSIIELLSSLSNLKNLSGLELSNNK-LEDL---PESIGNLSNLETLDLSNN-QISSISS-LGSLTNLRELDLSGNSL 289 (394)
T ss_pred CCcceecchhhhhcccccccccCCce-eeec---cchhccccccceeccccc-ccccccc-ccccCccCEEeccCccc
Confidence 8843 3334556666666644432 2221 112457888999999977 7888887 88899999999998644
No 147
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.57 E-value=0.0027 Score=69.17 Aligned_cols=164 Identities=18% Similarity=0.184 Sum_probs=95.1
Q ss_pred ceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHhcc
Q 038751 197 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLRELNSLLEYIHTSIKE 276 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 276 (915)
....+.|||..|.|||.|++++.+ ....+......++++. ......++..+.. .-.+.+++..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign--~~~~~~~~a~v~y~~s----e~f~~~~v~a~~~---------~~~~~Fk~~y-- 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGN--EALANGPNARVVYLTS----EDFTNDFVKALRD---------NEMEKFKEKY-- 174 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHH--HHHhhCCCceEEeccH----HHHHHHHHHHHHh---------hhHHHHHHhh--
Confidence 467899999999999999999999 4445554333333332 3344444444332 1223444444
Q ss_pred CeEEEEEeCCCCCC-ccChh-hhHHhhhc-CCCCceEEEEcCch---------HHHhhhcCcCeEeCCCCCHHHHHHHHH
Q 038751 277 KKFFLILDDVWPDD-YSKWE-PFHNCLMN-GLCGSRILVTTRKE---------TVARMMESTDVISIKELSEQECWSLFK 344 (915)
Q Consensus 277 k~~LlVlDdvw~~~-~~~~~-~l~~~l~~-~~~gs~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~ 344 (915)
.-=++++||++--. .+.|+ .+...|.. ...|-.||+|++.. .+.+.+...-++++.+.+.+....++.
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~ 254 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILR 254 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHH
Confidence 23388899996421 11222 24333332 12344899999753 234445667799999999999999999
Q ss_pred HhHcCCCCCCchhHHHHHHHHHHHhcCCCchHH
Q 038751 345 RFAFSGRSPTECEQLEEIGRKIVGKCKGLPLAA 377 (915)
Q Consensus 345 ~~~~~~~~~~~~~~l~~~~~~i~~~c~G~PLai 377 (915)
+++....-.-.+..+.-+++.+-+-..-+.-|+
T Consensus 255 kka~~~~~~i~~ev~~~la~~~~~nvReLegaL 287 (408)
T COG0593 255 KKAEDRGIEIPDEVLEFLAKRLDRNVRELEGAL 287 (408)
T ss_pred HHHHhcCCCCCHHHHHHHHHHhhccHHHHHHHH
Confidence 877544432333333444444333333333333
No 148
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.54 E-value=0.002 Score=72.98 Aligned_cols=165 Identities=15% Similarity=0.196 Sum_probs=89.4
Q ss_pred CccccchHHHHHHHHHHhcccc-------cccCceEEEEEEecCCCcHHHHHHHHhcccccccC-----CCeEEEEEeCC
Q 038751 171 SDVRGRDEEKNILKRKLLCESN-------EERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIEN-----FDKRIWVCVSD 238 (915)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-----F~~~~wv~vs~ 238 (915)
.++.|.+.+++++.+.+..+-. .+-...+-+.++|++|+|||++|+.+++.. ... +....++.+..
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL--~~~i~~~~~~~~~fl~v~~ 259 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSL--AQRIGAETGDKSYFLNIKG 259 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhh--ccccccccCCceeEEeccc
Confidence 4688899999998887642110 011234568999999999999999999842 222 12234444432
Q ss_pred CCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHh-ccCeEEEEEeCCCCCC-------ccCh-----hhhHHhhhcC-
Q 038751 239 PFDEFRIAKAIIEGLEGSLPNLRELNSLLEYIHTSI-KEKKFFLILDDVWPDD-------YSKW-----EPFHNCLMNG- 304 (915)
Q Consensus 239 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdvw~~~-------~~~~-----~~l~~~l~~~- 304 (915)
. + ++....+. .......+.+..++.. .+++.+|+||+++.-- .... ..+...+...
T Consensus 260 ~----e----Ll~kyvGe--te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~ 329 (512)
T TIGR03689 260 P----E----LLNKYVGE--TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVE 329 (512)
T ss_pred h----h----hcccccch--HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccc
Confidence 1 1 11111000 0011112222222221 3578999999995310 0111 2233333221
Q ss_pred -CCCceEEEEcCchHHHh-h-h---cCcCeEeCCCCCHHHHHHHHHHhH
Q 038751 305 -LCGSRILVTTRKETVAR-M-M---ESTDVISIKELSEQECWSLFKRFA 347 (915)
Q Consensus 305 -~~gs~iivTtR~~~v~~-~-~---~~~~~~~l~~L~~~~~~~lf~~~~ 347 (915)
..+..||.||..+.... . . .-...++++..+.++..++|..+.
T Consensus 330 ~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 330 SLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred cCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 23445566665543222 1 1 124568999999999999999876
No 149
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.53 E-value=0.0045 Score=61.92 Aligned_cols=183 Identities=17% Similarity=0.197 Sum_probs=107.9
Q ss_pred ceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeC-CCCCHHHHHHHHHHHhhCCCCC--cccHHHHHHHHHHH
Q 038751 197 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVS-DPFDEFRIAKAIIEGLEGSLPN--LRELNSLLEYIHTS 273 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs-~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~l~~~ 273 (915)
+.+++.|+|.-|.|||.+++....... + +.++=|.+. +......+...|+..+..+..- ....++..+.+...
T Consensus 50 ~qg~~~vtGevGsGKTv~~Ral~~s~~--~--d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al 125 (269)
T COG3267 50 GQGILAVTGEVGSGKTVLRRALLASLN--E--DQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAAL 125 (269)
T ss_pred CCceEEEEecCCCchhHHHHHHHHhcC--C--CceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHH
Confidence 567999999999999999995443211 1 122223343 3466778888888888763211 11233334444443
Q ss_pred h-ccCe-EEEEEeCCCCCCccChhhhHHhhhcCCCC---ceEEEEcCc--------hHHHhhhcCcCe-EeCCCCCHHHH
Q 038751 274 I-KEKK-FFLILDDVWPDDYSKWEPFHNCLMNGLCG---SRILVTTRK--------ETVARMMESTDV-ISIKELSEQEC 339 (915)
Q Consensus 274 l-~~k~-~LlVlDdvw~~~~~~~~~l~~~l~~~~~g---s~iivTtR~--------~~v~~~~~~~~~-~~l~~L~~~~~ 339 (915)
. ++++ ..+++||.........+.++-.......+ -+|++.-.. ......-..... |++.|++.++.
T Consensus 126 ~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~t 205 (269)
T COG3267 126 VKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAET 205 (269)
T ss_pred HHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChHHH
Confidence 3 4677 89999999765555555555433221112 234443321 111111112334 99999999999
Q ss_pred HHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCCCchHHHHHHhHh
Q 038751 340 WSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKGLPLAAKTIGSLL 384 (915)
Q Consensus 340 ~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~PLai~~~~~~l 384 (915)
..+++.+..+...+..- --.+....|.....|.|.+|..++...
T Consensus 206 ~~yl~~~Le~a~~~~~l-~~~~a~~~i~~~sqg~P~lin~~~~~A 249 (269)
T COG3267 206 GLYLRHRLEGAGLPEPL-FSDDALLLIHEASQGIPRLINNLATLA 249 (269)
T ss_pred HHHHHHHHhccCCCccc-CChhHHHHHHHHhccchHHHHHHHHHH
Confidence 99988876554322111 112344568888999999998886553
No 150
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.52 E-value=0.001 Score=79.99 Aligned_cols=166 Identities=19% Similarity=0.217 Sum_probs=91.6
Q ss_pred cCccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHH
Q 038751 170 VSDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAI 249 (915)
Q Consensus 170 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 249 (915)
+.+.+|.++.+++|+++|............++.++|++|+||||+|+.++.. ....| +-+..+...+..++...-
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~--l~~~~---~~i~~~~~~d~~~i~g~~ 395 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKA--TGRKY---VRMALGGVRDEAEIRGHR 395 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHH--hCCCE---EEEEcCCCCCHHHhccch
Confidence 3468999999999999886432111223457999999999999999999873 33333 223344433433322111
Q ss_pred HHHhhCCCCCcccHHHHHHHHHHHhccCeEEEEEeCCCCCCccC----hhhhHHhhhcCC---------------CCceE
Q 038751 250 IEGLEGSLPNLRELNSLLEYIHTSIKEKKFFLILDDVWPDDYSK----WEPFHNCLMNGL---------------CGSRI 310 (915)
Q Consensus 250 ~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~----~~~l~~~l~~~~---------------~gs~i 310 (915)
+...+.. ...+.+.+...- ...-+++||++....... .+.+...+.... ....+
T Consensus 396 -~~~~g~~-----~G~~~~~l~~~~-~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~ 468 (784)
T PRK10787 396 -RTYIGSM-----PGKLIQKMAKVG-VKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMF 468 (784)
T ss_pred -hccCCCC-----CcHHHHHHHhcC-CCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEE
Confidence 1111111 122333443322 234478899985432221 244554443211 23334
Q ss_pred EEEcCchHHHhh-hcCcCeEeCCCCCHHHHHHHHHHhH
Q 038751 311 LVTTRKETVARM-MESTDVISIKELSEQECWSLFKRFA 347 (915)
Q Consensus 311 ivTtR~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~ 347 (915)
|.|+....+... .+...++++.+++.++-.++.+++.
T Consensus 469 i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 469 VATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 445543322221 2335688999999999888887765
No 151
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.50 E-value=0.0024 Score=68.17 Aligned_cols=95 Identities=11% Similarity=0.101 Sum_probs=67.0
Q ss_pred cCeEEEEEeCCCCCCccChhhhHHhhhcCCCCceEEEEcCchH-HHh-hhcCcCeEeCCCCCHHHHHHHHHHhHcCCCCC
Q 038751 276 EKKFFLILDDVWPDDYSKWEPFHNCLMNGLCGSRILVTTRKET-VAR-MMESTDVISIKELSEQECWSLFKRFAFSGRSP 353 (915)
Q Consensus 276 ~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~-v~~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 353 (915)
+++-++|+|++...+...-+.+...+.....++.+|++|.+.. +.. .......+.+.+++.+++...+....
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~------ 185 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG------ 185 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC------
Confidence 4566899999966665667778888887777888887777543 322 22336688999999999998887531
Q ss_pred CchhHHHHHHHHHHHhcCCCchHHHHH
Q 038751 354 TECEQLEEIGRKIVGKCKGLPLAAKTI 380 (915)
Q Consensus 354 ~~~~~l~~~~~~i~~~c~G~PLai~~~ 380 (915)
.. ...+..++..++|.|+.+..+
T Consensus 186 ~~----~~~a~~~~~l~~G~p~~A~~~ 208 (319)
T PRK08769 186 VS----ERAAQEALDAARGHPGLAAQW 208 (319)
T ss_pred CC----hHHHHHHHHHcCCCHHHHHHH
Confidence 11 122566789999999876554
No 152
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.46 E-value=0.00017 Score=78.14 Aligned_cols=117 Identities=17% Similarity=0.236 Sum_probs=71.1
Q ss_pred CccCccEEEEcCcCCCCCCCCCCCCC-CcceeeccccccceEeCccccCCcccccccccccCCCcccccCcccceeeecC
Q 038751 751 SLNKLKMLTLNSFVKCEIMPPLGKLP-SLEILRIWHMRSVKRVGDEFLGMEISDHIHIHGTSSSSSVIAFPKLQKLELTG 829 (915)
Q Consensus 751 ~l~~L~~L~L~~~~~~~~l~~l~~Lp-~L~~L~L~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~f~~L~~L~l~~ 829 (915)
.+.++++|++++| .+..+| .+| +|++|.+++|..++.+|..+ ..+|+.|.+++|..... -.++|+.|.+.+
T Consensus 50 ~~~~l~~L~Is~c-~L~sLP---~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~s--LP~sLe~L~L~~ 121 (426)
T PRK15386 50 EARASGRLYIKDC-DIESLP---VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISG--LPESVRSLEIKG 121 (426)
T ss_pred HhcCCCEEEeCCC-CCcccC---CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccc--cccccceEEeCC
Confidence 5789999999999 677777 354 69999999999988887543 23566666666532221 223566666542
Q ss_pred cccccccccCCCCcccCcccceeecccCccc--cCCCcCCCCCCCcCeEeEcCCcch
Q 038751 830 MDELEEWDFGNDDITIMPHIKSLYITYCEKL--KSLPELLLRSTTLESLTIFGVPIV 884 (915)
Q Consensus 830 ~~~l~~~~~~~~~~~~lp~L~~L~l~~c~~L--~~lp~~l~~l~~L~~L~l~~c~~l 884 (915)
..+..+.. -.++|+.|.+.++... ..+|..+ .++|++|.+.+|..+
T Consensus 122 -n~~~~L~~------LPssLk~L~I~~~n~~~~~~lp~~L--PsSLk~L~Is~c~~i 169 (426)
T PRK15386 122 -SATDSIKN------VPNGLTSLSINSYNPENQARIDNLI--SPSLKTLSLTGCSNI 169 (426)
T ss_pred -CCCccccc------CcchHhheecccccccccccccccc--CCcccEEEecCCCcc
Confidence 22222210 1236677776443211 1222111 258999999999864
No 153
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.46 E-value=0.0045 Score=75.41 Aligned_cols=165 Identities=18% Similarity=0.222 Sum_probs=86.4
Q ss_pred CccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 038751 171 SDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAII 250 (915)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 250 (915)
.+++|.+..+++|.+++............++.++|++|+|||++|+.+.+. ....|- -++++...+..++...
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~--l~~~~~---~i~~~~~~~~~~i~g~-- 392 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKA--LNRKFV---RFSLGGVRDEAEIRGH-- 392 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHH--hcCCeE---EEeCCCcccHHHHcCC--
Confidence 458899999999998775332111223357999999999999999999983 333332 2233332333222110
Q ss_pred HHhhCCCCCcccHHHHHHHHHHHhccCeEEEEEeCCCCCCccC----hhhhHHhhhc--------C-------CCCceEE
Q 038751 251 EGLEGSLPNLRELNSLLEYIHTSIKEKKFFLILDDVWPDDYSK----WEPFHNCLMN--------G-------LCGSRIL 311 (915)
Q Consensus 251 ~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~----~~~l~~~l~~--------~-------~~gs~ii 311 (915)
.....+ .....+.+.+..... ++-+|+||++....... .+.+...+.. . ..+..+|
T Consensus 393 ---~~~~~g-~~~g~i~~~l~~~~~-~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I 467 (775)
T TIGR00763 393 ---RRTYVG-AMPGRIIQGLKKAKT-KNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFI 467 (775)
T ss_pred ---CCceeC-CCCchHHHHHHHhCc-CCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEEE
Confidence 000011 111223344443322 33478999985432211 1223333321 0 0223344
Q ss_pred EEcCchH-HHh-hhcCcCeEeCCCCCHHHHHHHHHHhH
Q 038751 312 VTTRKET-VAR-MMESTDVISIKELSEQECWSLFKRFA 347 (915)
Q Consensus 312 vTtR~~~-v~~-~~~~~~~~~l~~L~~~~~~~lf~~~~ 347 (915)
.||.... +.. .......+++.+++.++-.+++.++.
T Consensus 468 ~TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 468 ATANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred EecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHHH
Confidence 4554321 111 12334688999999988888886653
No 154
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.45 E-value=0.0039 Score=66.54 Aligned_cols=93 Identities=11% Similarity=0.083 Sum_probs=68.5
Q ss_pred cCeEEEEEeCCCCCCccChhhhHHhhhcCCCCceEEEEcCchH-HH-hhhcCcCeEeCCCCCHHHHHHHHHHhHcCCCCC
Q 038751 276 EKKFFLILDDVWPDDYSKWEPFHNCLMNGLCGSRILVTTRKET-VA-RMMESTDVISIKELSEQECWSLFKRFAFSGRSP 353 (915)
Q Consensus 276 ~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~-v~-~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 353 (915)
+++-++|+|++...+....+.+...+.....++.+|++|.++. +. ...+....+.+.+++.+++.+.+.... .
T Consensus 107 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~---~-- 181 (319)
T PRK06090 107 NGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQG---I-- 181 (319)
T ss_pred CCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCHHHHHHHHHHcC---C--
Confidence 4456889999977677788889998988878888888777643 33 333446789999999999999886542 1
Q ss_pred CchhHHHHHHHHHHHhcCCCchHHHHH
Q 038751 354 TECEQLEEIGRKIVGKCKGLPLAAKTI 380 (915)
Q Consensus 354 ~~~~~l~~~~~~i~~~c~G~PLai~~~ 380 (915)
. .+..+++.++|.|+.+..+
T Consensus 182 ~-------~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 182 T-------VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred c-------hHHHHHHHcCCCHHHHHHH
Confidence 1 1345788899999987655
No 155
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.45 E-value=9.7e-05 Score=74.35 Aligned_cols=202 Identities=15% Similarity=0.170 Sum_probs=124.8
Q ss_pred CCCCCCceEEEEecCCCCchhhhhhhhhHHHHhhHHHHHhhcCCCCCcceEEEeeeCCCCCCCcc-cCccCccEEEEcCc
Q 038751 685 KKKNLIDLILIFNEREESDDEKASEEMNEEKEAKHEAVCEALRPPPDIKSLEIMVFKGRTPSNWI-GSLNKLKMLTLNSF 763 (915)
Q Consensus 685 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~-~~l~~L~~L~L~~~ 763 (915)
.+++++.|+|.||... .-.++..-+..+|.|+.|+++.|.....-..+ ..+.||+.|.|.+.
T Consensus 69 ~~~~v~elDL~~N~iS-----------------dWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT 131 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLIS-----------------DWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGT 131 (418)
T ss_pred Hhhhhhhhhcccchhc-----------------cHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCC
Confidence 4578999999999643 33445556677899999999988754332222 25679999999877
Q ss_pred C-CCCCCC-CCCCCCCcceeeccccccceEe--Ccccc--CCcccccccccccCC------CcccccCcccceeeecCcc
Q 038751 764 V-KCEIMP-PLGKLPSLEILRIWHMRSVKRV--GDEFL--GMEISDHIHIHGTSS------SSSVIAFPKLQKLELTGMD 831 (915)
Q Consensus 764 ~-~~~~l~-~l~~Lp~L~~L~L~~~~~l~~~--~~~~~--~~~~l~~l~l~~~~~------~~~~~~f~~L~~L~l~~~~ 831 (915)
. .+.... .+..+|.++.|+++.++ +..+ +.+-. ....+.+++..+|.. ..-..-||++..+-+-.+|
T Consensus 132 ~L~w~~~~s~l~~lP~vtelHmS~N~-~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~P 210 (418)
T KOG2982|consen 132 GLSWTQSTSSLDDLPKVTELHMSDNS-LRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGP 210 (418)
T ss_pred CCChhhhhhhhhcchhhhhhhhccch-hhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCc
Confidence 5 233332 36789999999998875 2221 11111 122445556555521 1122368888888887775
Q ss_pred cccccccCCCCcccCcccceeecccCccccCCC--cCCCCCCCcCeEeEcCCcchhHhhccCCCCCcccccCCCcceecc
Q 038751 832 ELEEWDFGNDDITIMPHIKSLYITYCEKLKSLP--ELLLRSTTLESLTIFGVPIVQESFKRRTEKDWSKISHIPNIKIQN 909 (915)
Q Consensus 832 ~l~~~~~~~~~~~~lp~L~~L~l~~c~~L~~lp--~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~ip~v~~~~ 909 (915)
++...-+.+ ...+|.+-.|++... ++.+.. +.+..+++|..|.+.+.|....- +.++.-+--|+++|+|..-+
T Consensus 211 -lK~~s~ek~-se~~p~~~~LnL~~~-~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l--~~~err~llIaRL~~v~vLN 285 (418)
T KOG2982|consen 211 -LKTESSEKG-SEPFPSLSCLNLGAN-NIDSWASVDALNGFPQLVDLRVSENPLSDPL--RGGERRFLLIARLTKVQVLN 285 (418)
T ss_pred -ccchhhccc-CCCCCcchhhhhccc-ccccHHHHHHHcCCchhheeeccCCcccccc--cCCcceEEEEeeccceEEec
Confidence 444432221 235677766666644 444432 34667888999999998876441 22334455678888887654
No 156
>PRK10536 hypothetical protein; Provisional
Probab=97.43 E-value=0.0024 Score=64.91 Aligned_cols=134 Identities=17% Similarity=0.182 Sum_probs=74.4
Q ss_pred CccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEE----eCC-----CCC
Q 038751 171 SDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVC----VSD-----PFD 241 (915)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~----vs~-----~~~ 241 (915)
..+.+|......++.++.. ..+|.++|++|+|||+||.++..+.-..+.|+..+-+. +++ +-+
T Consensus 55 ~~i~p~n~~Q~~~l~al~~--------~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~ 126 (262)
T PRK10536 55 SPILARNEAQAHYLKAIES--------KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGD 126 (262)
T ss_pred ccccCCCHHHHHHHHHHhc--------CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCC
Confidence 4577888899999998853 24899999999999999988776432234454433221 111 011
Q ss_pred HHH----HHHHHHHHhhCCCCCcccHHHHHH----HH----HHHhccCeE---EEEEeCCCCCCccChhhhHHhhhcCCC
Q 038751 242 EFR----IAKAIIEGLEGSLPNLRELNSLLE----YI----HTSIKEKKF---FLILDDVWPDDYSKWEPFHNCLMNGLC 306 (915)
Q Consensus 242 ~~~----~~~~i~~~l~~~~~~~~~~~~~~~----~l----~~~l~~k~~---LlVlDdvw~~~~~~~~~l~~~l~~~~~ 306 (915)
..+ .++-+.+.+..-. +....+.... .+ -.+++++.+ +||+|++.+.+. ..+...+...+.
T Consensus 127 ~~eK~~p~~~pi~D~L~~~~-~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~---~~~k~~ltR~g~ 202 (262)
T PRK10536 127 IAEKFAPYFRPVYDVLVRRL-GASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTA---AQMKMFLTRLGE 202 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCH---HHHHHHHhhcCC
Confidence 111 1222222221100 0011111110 00 134566655 999999976554 444445555678
Q ss_pred CceEEEEcCc
Q 038751 307 GSRILVTTRK 316 (915)
Q Consensus 307 gs~iivTtR~ 316 (915)
+|++|+|=-.
T Consensus 203 ~sk~v~~GD~ 212 (262)
T PRK10536 203 NVTVIVNGDI 212 (262)
T ss_pred CCEEEEeCCh
Confidence 9999987654
No 157
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.43 E-value=0.00071 Score=78.62 Aligned_cols=52 Identities=15% Similarity=0.222 Sum_probs=40.8
Q ss_pred ccCccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcc
Q 038751 169 NVSDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 169 ~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
.-.+++|.++.++++..++..... .....+++.|+|++|+||||+++.++..
T Consensus 82 ~ldel~~~~~ki~~l~~~l~~~~~-~~~~~~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 82 TQHELAVHKKKIEEVETWLKAQVL-ENAPKRILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred CHHHhcCcHHHHHHHHHHHHhccc-ccCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 345799999999999999865432 1223468999999999999999999874
No 158
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.42 E-value=0.0052 Score=69.65 Aligned_cols=209 Identities=14% Similarity=0.102 Sum_probs=134.2
Q ss_pred cCccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccc------cccCCCeEEEEEeCCCCCHH
Q 038751 170 VSDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKD------VIENFDKRIWVCVSDPFDEF 243 (915)
Q Consensus 170 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~------~~~~F~~~~wv~vs~~~~~~ 243 (915)
+..+-+|+.|..+|.+.+...-.. .+..+.+.|.|.+|.|||+.+..|.+..+ .-..|+ .+.|+.-.-..+.
T Consensus 395 p~sLpcRe~E~~~I~~f~~~~i~~-~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~ 472 (767)
T KOG1514|consen 395 PESLPCRENEFSEIEDFLRSFISD-QGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPR 472 (767)
T ss_pred cccccchhHHHHHHHHHHHhhcCC-CCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHH
Confidence 345789999999999988654331 23445999999999999999999987422 112343 3455555556789
Q ss_pred HHHHHHHHHhhCCCCCcccHHHHHHHHHHHhc-----cCeEEEEEeCCCCCCccChhhhHHhhhc-CCCCceEEEEcCc-
Q 038751 244 RIAKAIIEGLEGSLPNLRELNSLLEYIHTSIK-----EKKFFLILDDVWPDDYSKWEPFHNCLMN-GLCGSRILVTTRK- 316 (915)
Q Consensus 244 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~-----~k~~LlVlDdvw~~~~~~~~~l~~~l~~-~~~gs~iivTtR~- 316 (915)
+++..|..++.+.... .....+.|..++. .+..++++|++..---..-+-+...|.+ ..++||++|.+=.
T Consensus 473 ~~Y~~I~~~lsg~~~~---~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaN 549 (767)
T KOG1514|consen 473 EIYEKIWEALSGERVT---WDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIAN 549 (767)
T ss_pred HHHHHHHHhcccCccc---HHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecc
Confidence 9999999999874322 2333444544442 4568888898732100112234444544 3578887665432
Q ss_pred -hH---------HHhhhcCcCeEeCCCCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCCCchHHHHHHhHhh
Q 038751 317 -ET---------VARMMESTDVISIKELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKGLPLAAKTIGSLLR 385 (915)
Q Consensus 317 -~~---------v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~PLai~~~~~~l~ 385 (915)
.. ++..+ ....+.++|-+.++-.++...+..+.. .......+-+|++|+...|-.-.|+...-++..
T Consensus 550 TmdlPEr~l~nrvsSRl-g~tRi~F~pYth~qLq~Ii~~RL~~~~-~f~~~aielvarkVAavSGDaRraldic~RA~E 626 (767)
T KOG1514|consen 550 TMDLPERLLMNRVSSRL-GLTRICFQPYTHEQLQEIISARLKGLD-AFENKAIELVARKVAAVSGDARRALDICRRAAE 626 (767)
T ss_pred cccCHHHHhccchhhhc-cceeeecCCCCHHHHHHHHHHhhcchh-hcchhHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 11 11111 134788899999999999988875542 234456677788888888888888777655543
No 159
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.41 E-value=0.002 Score=62.05 Aligned_cols=137 Identities=17% Similarity=0.137 Sum_probs=76.6
Q ss_pred cchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccc------------------cCCCeEEEEEe
Q 038751 175 GRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVI------------------ENFDKRIWVCV 236 (915)
Q Consensus 175 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~------------------~~F~~~~wv~v 236 (915)
|-++..+.+.+.+... .-...+.++|+.|+||+++|..+.+..--. +...-..|+.-
T Consensus 1 gq~~~~~~L~~~~~~~-----~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~ 75 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG-----RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKP 75 (162)
T ss_dssp S-HHHHHHHHHHHHCT-----C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEET
T ss_pred CcHHHHHHHHHHHHcC-----CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEec
Confidence 4455666666666433 234578999999999999997775531111 11222233322
Q ss_pred CCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHh-----ccCeEEEEEeCCCCCCccChhhhHHhhhcCCCCceEE
Q 038751 237 SDPFDEFRIAKAIIEGLEGSLPNLRELNSLLEYIHTSI-----KEKKFFLILDDVWPDDYSKWEPFHNCLMNGLCGSRIL 311 (915)
Q Consensus 237 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~ii 311 (915)
.... ..-..+++. .+.+.+ .++.=++|+||+.....+.++.++..+.....++.+|
T Consensus 76 ~~~~------------------~~i~i~~ir-~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fi 136 (162)
T PF13177_consen 76 DKKK------------------KSIKIDQIR-EIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFI 136 (162)
T ss_dssp TTSS------------------SSBSHHHHH-HHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEE
T ss_pred cccc------------------chhhHHHHH-HHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEE
Confidence 2210 011223333 222222 2456689999998777788899999999888899999
Q ss_pred EEcCchH-HH-hhhcCcCeEeCCCCC
Q 038751 312 VTTRKET-VA-RMMESTDVISIKELS 335 (915)
Q Consensus 312 vTtR~~~-v~-~~~~~~~~~~l~~L~ 335 (915)
++|.+.. +. ........+.+.+++
T Consensus 137 L~t~~~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 137 LITNNPSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp EEES-GGGS-HHHHTTSEEEEE----
T ss_pred EEECChHHChHHHHhhceEEecCCCC
Confidence 9998754 22 222334566666654
No 160
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.41 E-value=0.00088 Score=62.88 Aligned_cols=87 Identities=22% Similarity=0.130 Sum_probs=45.5
Q ss_pred EEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHhccC-
Q 038751 199 QIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLRELNSLLEYIHTSIKEK- 277 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k- 277 (915)
..+.|+|++|+||||+|+.++... ......++.+..+........... ....... ............+.......
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 78 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALAREL--GPPGGGVIYIDGEDILEEVLDQLL-LIIVGGK-KASGSGELRLRLALALARKLK 78 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhcc--CCCCCCEEEECCEEccccCHHHHH-hhhhhcc-CCCCCHHHHHHHHHHHHHhcC
Confidence 578999999999999999998842 222223455554443222222111 0111111 11112222233333333333
Q ss_pred eEEEEEeCCCCC
Q 038751 278 KFFLILDDVWPD 289 (915)
Q Consensus 278 ~~LlVlDdvw~~ 289 (915)
..+|++|+++..
T Consensus 79 ~~viiiDei~~~ 90 (148)
T smart00382 79 PDVLILDEITSL 90 (148)
T ss_pred CCEEEEECCccc
Confidence 489999999653
No 161
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.40 E-value=0.0029 Score=68.74 Aligned_cols=163 Identities=12% Similarity=0.102 Sum_probs=91.2
Q ss_pred cccc-chHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 038751 172 DVRG-RDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAII 250 (915)
Q Consensus 172 ~~~G-r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 250 (915)
.++| -+...+.+...+... .-.+...++|+.|+||||+|+.+.+..--....... .++.-...+.+.
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~-----~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~-------~cg~C~~c~~~~ 73 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKN-----RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVE-------PCGTCTNCKRID 73 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC-------CCCcCHHHHHHh
Confidence 3556 555667777776432 235678999999999999998875531111100000 000001111110
Q ss_pred HHhhC------CCCCcccHHHHHHHHHHH----hccCeEEEEEeCCCCCCccChhhhHHhhhcCCCCceEEEEcCchH-H
Q 038751 251 EGLEG------SLPNLRELNSLLEYIHTS----IKEKKFFLILDDVWPDDYSKWEPFHNCLMNGLCGSRILVTTRKET-V 319 (915)
Q Consensus 251 ~~l~~------~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~-v 319 (915)
..-.. ........+++.+.+... ..+.+-++|+|++...+.+..+.+...+.....++.+|++|.+.. +
T Consensus 74 ~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~l 153 (329)
T PRK08058 74 SGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQI 153 (329)
T ss_pred cCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhC
Confidence 00000 000011223333322211 234556799999976666667778888887777888888877543 2
Q ss_pred Hh-hhcCcCeEeCCCCCHHHHHHHHHHh
Q 038751 320 AR-MMESTDVISIKELSEQECWSLFKRF 346 (915)
Q Consensus 320 ~~-~~~~~~~~~l~~L~~~~~~~lf~~~ 346 (915)
.. .......+++.+++.++....+...
T Consensus 154 l~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 154 LPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred cHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 22 2233678999999999998888654
No 162
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.35 E-value=0.0015 Score=80.20 Aligned_cols=156 Identities=19% Similarity=0.171 Sum_probs=83.3
Q ss_pred CccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhccccccc----CCCeEEEEEeCCCCCHHHHH
Q 038751 171 SDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIE----NFDKRIWVCVSDPFDEFRIA 246 (915)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~ 246 (915)
..++||+.++++++..|... ...-+.++|++|+|||++|+.+.....-.. .....+|.. +...+.
T Consensus 173 ~~~igr~~ei~~~~~~l~r~------~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l-----~~~~l~ 241 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRR------TKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLAL-----DMGALI 241 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcC------CCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEe-----eHHHHh
Confidence 35899999999999999654 234456899999999999988877421110 012233321 111111
Q ss_pred HHHHHHhhCCCCCcccHHHHHHHHHHHh-c-cCeEEEEEeCCCCCC-----ccChhhhHHhhh-cCCCC-ceEEEEcCch
Q 038751 247 KAIIEGLEGSLPNLRELNSLLEYIHTSI-K-EKKFFLILDDVWPDD-----YSKWEPFHNCLM-NGLCG-SRILVTTRKE 317 (915)
Q Consensus 247 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~-~k~~LlVlDdvw~~~-----~~~~~~l~~~l~-~~~~g-s~iivTtR~~ 317 (915)
.+.... .+.+.....+.+.+ + +++.+|++|+++.-. ...-+ ....|. ....| -++|-+|..+
T Consensus 242 -------a~~~~~-g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d-~~~~Lk~~l~~g~i~~IgaTt~~ 312 (852)
T TIGR03346 242 -------AGAKYR-GEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMD-AGNMLKPALARGELHCIGATTLD 312 (852)
T ss_pred -------hcchhh-hhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhH-HHHHhchhhhcCceEEEEeCcHH
Confidence 011000 12222222222222 2 468999999996321 01111 111111 12233 3555555544
Q ss_pred HHHhh-------hcCcCeEeCCCCCHHHHHHHHHHh
Q 038751 318 TVARM-------MESTDVISIKELSEQECWSLFKRF 346 (915)
Q Consensus 318 ~v~~~-------~~~~~~~~l~~L~~~~~~~lf~~~ 346 (915)
+.... ......+.+...+.++...++...
T Consensus 313 e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~ 348 (852)
T TIGR03346 313 EYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGL 348 (852)
T ss_pred HHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHH
Confidence 43221 122457889999999999988764
No 163
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.34 E-value=0.00025 Score=55.66 Aligned_cols=59 Identities=24% Similarity=0.412 Sum_probs=48.6
Q ss_pred cccceeeecCcccccccccCCCCcccCcccceeecccCccccCCC-cCCCCCCCcCeEeEcCCc
Q 038751 820 PKLQKLELTGMDELEEWDFGNDDITIMPHIKSLYITYCEKLKSLP-ELLLRSTTLESLTIFGVP 882 (915)
Q Consensus 820 ~~L~~L~l~~~~~l~~~~~~~~~~~~lp~L~~L~l~~c~~L~~lp-~~l~~l~~L~~L~l~~c~ 882 (915)
|+|++|++.++ ++..++. +.+..+++|+.|++++| ++..+| ..+.++++|++|++++|+
T Consensus 1 p~L~~L~l~~n-~l~~i~~--~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPP--DSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSS-TESEECT--TTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCC-CCCccCH--HHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCc
Confidence 68999999987 5666653 34668999999999977 678887 467899999999999985
No 164
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.34 E-value=0.0012 Score=78.72 Aligned_cols=154 Identities=18% Similarity=0.201 Sum_probs=85.1
Q ss_pred CccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccC-----CCeEEEEEeCCCCCHHHH
Q 038751 171 SDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIEN-----FDKRIWVCVSDPFDEFRI 245 (915)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-----F~~~~wv~vs~~~~~~~~ 245 (915)
..++||+.+++++++.|.... ..-+.++|++|+|||++|+.++... +... .++.+|.. +...
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~------~~n~LLvGppGvGKT~lae~la~~i-~~~~vP~~l~~~~~~~l-----~~~~- 252 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRR------KNNPLLVGESGVGKTAIAEGLAWRI-VQGDVPEVMADCTIYSL-----DIGS- 252 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccC------CCCeEEECCCCCCHHHHHHHHHHHH-HhcCCCchhcCCeEEec-----cHHH-
Confidence 358999999999999997642 2335689999999999999988632 1111 13444421 1111
Q ss_pred HHHHHHHhhCCCCCcccHHHHHHHHHHHh-ccCeEEEEEeCCCCC------CccChhh---hHHhhhcCCCCceEEEEcC
Q 038751 246 AKAIIEGLEGSLPNLRELNSLLEYIHTSI-KEKKFFLILDDVWPD------DYSKWEP---FHNCLMNGLCGSRILVTTR 315 (915)
Q Consensus 246 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdvw~~------~~~~~~~---l~~~l~~~~~gs~iivTtR 315 (915)
+ +.+... ..+.+.....+.+.+ +..+.+|++|+++.- .....+. +...+.. ..-++|-+|.
T Consensus 253 ---l---laG~~~-~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~--g~i~vIgATt 323 (758)
T PRK11034 253 ---L---LAGTKY-RGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS--GKIRVIGSTT 323 (758)
T ss_pred ---H---hcccch-hhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC--CCeEEEecCC
Confidence 1 111110 112222222222222 345779999999531 1111111 2222221 1234555555
Q ss_pred chHHHhh-------hcCcCeEeCCCCCHHHHHHHHHHh
Q 038751 316 KETVARM-------MESTDVISIKELSEQECWSLFKRF 346 (915)
Q Consensus 316 ~~~v~~~-------~~~~~~~~l~~L~~~~~~~lf~~~ 346 (915)
.++.... ......+.+++++.++..+++...
T Consensus 324 ~~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~ 361 (758)
T PRK11034 324 YQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGL 361 (758)
T ss_pred hHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHH
Confidence 4443211 122458999999999999999864
No 165
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.33 E-value=0.002 Score=78.93 Aligned_cols=138 Identities=17% Similarity=0.272 Sum_probs=77.9
Q ss_pred CccccchHHHHHHHHHHhcccc---cccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHH
Q 038751 171 SDVRGRDEEKNILKRKLLCESN---EERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAK 247 (915)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 247 (915)
..++|.+..++.+...+..... ..+....++.++|+.|+|||++|+.+.+. .-..-...+.+..+.-.. .
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~--l~~~~~~~i~id~se~~~-----~ 640 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANF--MFDSDDAMVRIDMSEFME-----K 640 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHH--hhcCCCcEEEEEhHHhhh-----h
Confidence 4588999999998888864321 01223457899999999999999998863 211112234444433211 1
Q ss_pred HHHHHhhCCCCCcccHHHHHHHHHHHhccC-eEEEEEeCCCCCCccChhhhHHhhhcCC-----------CCceEEEEcC
Q 038751 248 AIIEGLEGSLPNLRELNSLLEYIHTSIKEK-KFFLILDDVWPDDYSKWEPFHNCLMNGL-----------CGSRILVTTR 315 (915)
Q Consensus 248 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k-~~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iivTtR 315 (915)
.....+.+..++....+. ...+.+.++.+ .-+|+|||+...++..++.+...+..+. ..+.||+||.
T Consensus 641 ~~~~~LiG~~pgy~g~~~-~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN 719 (857)
T PRK10865 641 HSVSRLVGAPPGYVGYEE-GGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSN 719 (857)
T ss_pred hhHHHHhCCCCcccccch-hHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEEeCC
Confidence 112223333222111111 11233333323 3589999997666777777777775441 2334788887
Q ss_pred c
Q 038751 316 K 316 (915)
Q Consensus 316 ~ 316 (915)
.
T Consensus 720 ~ 720 (857)
T PRK10865 720 L 720 (857)
T ss_pred c
Confidence 5
No 166
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.33 E-value=0.0027 Score=78.07 Aligned_cols=135 Identities=19% Similarity=0.279 Sum_probs=80.0
Q ss_pred CccccchHHHHHHHHHHhccccc---ccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHH
Q 038751 171 SDVRGRDEEKNILKRKLLCESNE---ERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAK 247 (915)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 247 (915)
..++|.+..++.+.+.+.....+ ......++.++|+.|+|||++|+.+... ....-...+.++.+...+...
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~--l~~~~~~~i~~d~s~~~~~~~--- 639 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEF--LFDDEDAMVRIDMSEYMEKHS--- 639 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhhcccch---
Confidence 45899999999999998754211 1223567889999999999999998873 211112233444443222111
Q ss_pred HHHHHhhCCCCCc---ccHHHHHHHHHHHhccCe-EEEEEeCCCCCCccChhhhHHhhhcCC-----------CCceEEE
Q 038751 248 AIIEGLEGSLPNL---RELNSLLEYIHTSIKEKK-FFLILDDVWPDDYSKWEPFHNCLMNGL-----------CGSRILV 312 (915)
Q Consensus 248 ~i~~~l~~~~~~~---~~~~~~~~~l~~~l~~k~-~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iiv 312 (915)
...+.+..++. .+...+. +.++.++ .+|+||++...++..++.+...+..+. ..+.||+
T Consensus 640 --~~~l~g~~~g~~g~~~~g~l~----~~v~~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~ 713 (852)
T TIGR03346 640 --VARLIGAPPGYVGYEEGGQLT----EAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIM 713 (852)
T ss_pred --HHHhcCCCCCccCcccccHHH----HHHHcCCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEE
Confidence 11222222221 1222233 3332333 489999998777778888888776542 3445888
Q ss_pred EcCc
Q 038751 313 TTRK 316 (915)
Q Consensus 313 TtR~ 316 (915)
||..
T Consensus 714 TSn~ 717 (852)
T TIGR03346 714 TSNL 717 (852)
T ss_pred eCCc
Confidence 8875
No 167
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.32 E-value=0.0083 Score=64.25 Aligned_cols=176 Identities=9% Similarity=-0.036 Sum_probs=101.5
Q ss_pred HHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCC---Ce-----EEEEEeCCCCCHHHHHHHHHH
Q 038751 180 KNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENF---DK-----RIWVCVSDPFDEFRIAKAIIE 251 (915)
Q Consensus 180 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~-----~~wv~vs~~~~~~~~~~~i~~ 251 (915)
-+.+.+.+... .-...+.+.|+.|+||+++|+.+..-.--.... .| +-++..+..+|...+.
T Consensus 11 ~~~l~~~~~~~-----rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~----- 80 (325)
T PRK06871 11 YQQITQAFQQG-----LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILE----- 80 (325)
T ss_pred HHHHHHHHHcC-----CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEc-----
Confidence 44555555432 234678899999999999998876531110100 00 0011111111111000
Q ss_pred HhhCCCCCcccHHHHHHHHHHHh-----ccCeEEEEEeCCCCCCccChhhhHHhhhcCCCCceEEEEcCch-HHHhh-hc
Q 038751 252 GLEGSLPNLRELNSLLEYIHTSI-----KEKKFFLILDDVWPDDYSKWEPFHNCLMNGLCGSRILVTTRKE-TVARM-ME 324 (915)
Q Consensus 252 ~l~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~-~~ 324 (915)
......-.++++.+ +.+.+ .+++-++|+|++...+....+.+...+.....++.+|++|.+. .+... ..
T Consensus 81 ---p~~~~~I~id~iR~-l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~S 156 (325)
T PRK06871 81 ---PIDNKDIGVDQVRE-INEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYS 156 (325)
T ss_pred ---cccCCCCCHHHHHH-HHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHh
Confidence 00000112333332 22222 3566688899997777778888988888888888888888764 33322 33
Q ss_pred CcCeEeCCCCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCCCchHHH
Q 038751 325 STDVISIKELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKGLPLAAK 378 (915)
Q Consensus 325 ~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~PLai~ 378 (915)
....+.+.++++++..+.+...... .. ..+...++.++|.|..+.
T Consensus 157 RC~~~~~~~~~~~~~~~~L~~~~~~-----~~----~~~~~~~~l~~g~p~~A~ 201 (325)
T PRK06871 157 RCQTWLIHPPEEQQALDWLQAQSSA-----EI----SEILTALRINYGRPLLAL 201 (325)
T ss_pred hceEEeCCCCCHHHHHHHHHHHhcc-----Ch----HHHHHHHHHcCCCHHHHH
Confidence 3678999999999999988876411 11 124556788999997443
No 168
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.32 E-value=0.002 Score=78.93 Aligned_cols=45 Identities=29% Similarity=0.291 Sum_probs=37.5
Q ss_pred CccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcc
Q 038751 171 SDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
..++||+.+++++++.|... ...-+.++|++|+||||+|+.+...
T Consensus 178 ~~vigr~~ei~~~i~iL~r~------~~~n~lL~G~pGvGKT~l~~~la~~ 222 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRR------TKNNPVLIGEPGVGKTAIVEGLAQR 222 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcC------CcCceEEECCCCCCHHHHHHHHHHH
Confidence 35999999999999999754 2344669999999999999888774
No 169
>PRK12377 putative replication protein; Provisional
Probab=97.31 E-value=0.00059 Score=70.12 Aligned_cols=102 Identities=18% Similarity=0.155 Sum_probs=57.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHhccC
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLRELNSLLEYIHTSIKEK 277 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 277 (915)
...+.++|.+|+|||+||..+++.. ......++++++. +++..+-..... ...... .+ +.+ .+
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l--~~~g~~v~~i~~~------~l~~~l~~~~~~----~~~~~~---~l-~~l-~~ 163 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRL--LAKGRSVIVVTVP------DVMSRLHESYDN----GQSGEK---FL-QEL-CK 163 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH--HHcCCCeEEEEHH------HHHHHHHHHHhc----cchHHH---HH-HHh-cC
Confidence 3578999999999999999999853 3333445676554 344444333211 111111 22 222 34
Q ss_pred eEEEEEeCCCCCCccChhh--hHHhhhcC-CCCceEEEEcCc
Q 038751 278 KFFLILDDVWPDDYSKWEP--FHNCLMNG-LCGSRILVTTRK 316 (915)
Q Consensus 278 ~~LlVlDdvw~~~~~~~~~--l~~~l~~~-~~gs~iivTtR~ 316 (915)
-=|||+||+.......|.. +...+... .+.--+||||-.
T Consensus 164 ~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 164 VDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred CCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 5699999995544444543 33333332 223346777763
No 170
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.28 E-value=0.0011 Score=73.90 Aligned_cols=158 Identities=15% Similarity=0.150 Sum_probs=87.9
Q ss_pred CccccchHHHHHHHHHHhcccc-------cccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHH
Q 038751 171 SDVRGRDEEKNILKRKLLCESN-------EERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEF 243 (915)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 243 (915)
.++.|.+.++++|.+.+.-.-. -+-...+-+.++|++|+|||++|+.+++. ....| +.+..+.
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~e--l~~~f---i~V~~se----- 252 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANE--TSATF---LRVVGSE----- 252 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHh--hCCCE---EEEecch-----
Confidence 4678999998888887742111 01123456789999999999999999983 33333 2221111
Q ss_pred HHHHHHHHHhhCCCCCcccHHHHHHHHHHHhccCeEEEEEeCCCCC--------Ccc---ChhhhHHhh---hc--CCCC
Q 038751 244 RIAKAIIEGLEGSLPNLRELNSLLEYIHTSIKEKKFFLILDDVWPD--------DYS---KWEPFHNCL---MN--GLCG 307 (915)
Q Consensus 244 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~--------~~~---~~~~l~~~l---~~--~~~g 307 (915)
+. ....+ .....+...+.....+.+.+|+||++..- ... ....+...+ .. ...+
T Consensus 253 -L~----~k~~G-----e~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~ 322 (438)
T PTZ00361 253 -LI----QKYLG-----DGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGD 322 (438)
T ss_pred -hh----hhhcc-----hHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCC
Confidence 11 11111 01111222222333467889999987320 000 011122222 11 1345
Q ss_pred ceEEEEcCchHHHhh-h----cCcCeEeCCCCCHHHHHHHHHHhHc
Q 038751 308 SRILVTTRKETVARM-M----ESTDVISIKELSEQECWSLFKRFAF 348 (915)
Q Consensus 308 s~iivTtR~~~v~~~-~----~~~~~~~l~~L~~~~~~~lf~~~~~ 348 (915)
.+||.||........ + .....+++...+.++..++|..+..
T Consensus 323 V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~ 368 (438)
T PTZ00361 323 VKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTS 368 (438)
T ss_pred eEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHh
Confidence 678888876543332 1 1245789999999999999987753
No 171
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=1e-05 Score=81.10 Aligned_cols=161 Identities=19% Similarity=0.209 Sum_probs=97.5
Q ss_pred hccCCCCCCceEEEEecCCCCchhhhhhhhhHHHHhhHHHHHhhcCCCCCcceEEEeeeCCCCC---CCcccCccCccEE
Q 038751 682 HLEKKKNLIDLILIFNEREESDDEKASEEMNEEKEAKHEAVCEALRPPPDIKSLEIMVFKGRTP---SNWIGSLNKLKML 758 (915)
Q Consensus 682 ~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~---p~~~~~l~~L~~L 758 (915)
.++.|.+|+.|.|.++. .++.+...+..-.+|+.|+++++.|..- ---+.+++.|..|
T Consensus 205 iLs~C~kLk~lSlEg~~-------------------LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 205 ILSQCSKLKNLSLEGLR-------------------LDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred HHHHHHhhhhccccccc-------------------cCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 35556667777776654 2233444555667777788877765321 1123477888888
Q ss_pred EEcCcCCCCCC-CC-CC-CCCCcceeeccccccceEeCccccCCcccccccccccCCCcccccCcccceeeecCcccccc
Q 038751 759 TLNSFVKCEIM-PP-LG-KLPSLEILRIWHMRSVKRVGDEFLGMEISDHIHIHGTSSSSSVIAFPKLQKLELTGMDELEE 835 (915)
Q Consensus 759 ~L~~~~~~~~l-~~-l~-~Lp~L~~L~L~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~f~~L~~L~l~~~~~l~~ 835 (915)
+|++|...... .. .. -=++|+.|+|+||...-... .+.+| ...+|+|..|+++++..++.
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~s-------h~~tL----------~~rcp~l~~LDLSD~v~l~~ 328 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKS-------HLSTL----------VRRCPNLVHLDLSDSVMLKN 328 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhh-------HHHHH----------HHhCCceeeeccccccccCc
Confidence 88888643321 11 11 12567778887765221111 11111 34688999999998877665
Q ss_pred cccCCCCcccCcccceeecccCccccCCCc---CCCCCCCcCeEeEcCCc
Q 038751 836 WDFGNDDITIMPHIKSLYITYCEKLKSLPE---LLLRSTTLESLTIFGVP 882 (915)
Q Consensus 836 ~~~~~~~~~~lp~L~~L~l~~c~~L~~lp~---~l~~l~~L~~L~l~~c~ 882 (915)
-.+.. +-.|+.|++|.++.|..+ +|+ .+...|+|.+|++.||-
T Consensus 329 ~~~~~--~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 329 DCFQE--FFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred hHHHH--HHhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEecccc
Confidence 33221 447899999999999643 343 24567889999999873
No 172
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.27 E-value=0.0026 Score=77.06 Aligned_cols=123 Identities=15% Similarity=0.209 Sum_probs=71.5
Q ss_pred CccccchHHHHHHHHHHhcccc---cccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHH
Q 038751 171 SDVRGRDEEKNILKRKLLCESN---EERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAK 247 (915)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 247 (915)
..++|.+..++.+.+.+..... ..+....++.++|+.|+|||+||+.+++. . +...+.++.++..+...
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~--l---~~~~~~~d~se~~~~~~--- 525 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEA--L---GVHLERFDMSEYMEKHT--- 525 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHH--h---cCCeEEEeCchhhhccc---
Confidence 3578888888888888764311 01224557899999999999999999873 2 22345555544222111
Q ss_pred HHHHHhhCCCCCcccHHHHHHHHHHHhccCe-EEEEEeCCCCCCccChhhhHHhhhcC
Q 038751 248 AIIEGLEGSLPNLRELNSLLEYIHTSIKEKK-FFLILDDVWPDDYSKWEPFHNCLMNG 304 (915)
Q Consensus 248 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~-~LlVlDdvw~~~~~~~~~l~~~l~~~ 304 (915)
...+-+..++....++ ...+.+.++.++ -+++||++...+++.++.+...+..+
T Consensus 526 --~~~lig~~~gyvg~~~-~~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~g 580 (731)
T TIGR02639 526 --VSRLIGAPPGYVGFEQ-GGLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDYA 580 (731)
T ss_pred --HHHHhcCCCCCcccch-hhHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhccC
Confidence 1112222222111111 112333343344 49999999877777777777776654
No 173
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.24 E-value=0.0091 Score=62.69 Aligned_cols=140 Identities=13% Similarity=0.110 Sum_probs=71.5
Q ss_pred EEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHH--------HHh----hCCCCCcccHHHHH
Q 038751 200 IISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAII--------EGL----EGSLPNLRELNSLL 267 (915)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~--------~~l----~~~~~~~~~~~~~~ 267 (915)
-|.+.|++|+|||++|+.+.+ .... ....++.....+..+++.... .++ .... +.....-.-
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~--~lg~---~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 96 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVAR--KRDR---PVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLE-DIVRQNWVD 96 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHH--HhCC---CEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhh-cccceeecC
Confidence 466899999999999999986 2222 234556665555555443211 000 0000 000000000
Q ss_pred HHHHHHhccCeEEEEEeCCCCCCccChhhhHHhhhcC----------------CCCceEEEEcCchHHH-------hhhc
Q 038751 268 EYIHTSIKEKKFFLILDDVWPDDYSKWEPFHNCLMNG----------------LCGSRILVTTRKETVA-------RMME 324 (915)
Q Consensus 268 ~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~----------------~~gs~iivTtR~~~v~-------~~~~ 324 (915)
..+.... .+...+++|++...+++.+..+...+..+ .++.+||.|+....-+ ....
T Consensus 97 g~l~~A~-~~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l~~aL~~ 175 (262)
T TIGR02640 97 NRLTLAV-REGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHETQDALLD 175 (262)
T ss_pred chHHHHH-HcCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceecccHHHHh
Confidence 0111111 23468999999766566666666655432 1256788888753211 0111
Q ss_pred CcCeEeCCCCCHHHHHHHHHHh
Q 038751 325 STDVISIKELSEQECWSLFKRF 346 (915)
Q Consensus 325 ~~~~~~l~~L~~~~~~~lf~~~ 346 (915)
....+.+...+.++-.+++.++
T Consensus 176 R~~~i~i~~P~~~~e~~Il~~~ 197 (262)
T TIGR02640 176 RLITIFMDYPDIDTETAILRAK 197 (262)
T ss_pred hcEEEECCCCCHHHHHHHHHHh
Confidence 1234556666666666666554
No 174
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.24 E-value=0.0048 Score=68.39 Aligned_cols=159 Identities=15% Similarity=0.168 Sum_probs=87.6
Q ss_pred ccCccccchHHHHHHHHHHhcccc-------cccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCC
Q 038751 169 NVSDVRGRDEEKNILKRKLLCESN-------EERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFD 241 (915)
Q Consensus 169 ~~~~~~Gr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 241 (915)
.-.++.|.+..+++|.+.+..+-. -+-...+-|.++|++|+|||++|+.+++. ....| +.+..+
T Consensus 143 ~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~--l~~~f---i~i~~s---- 213 (398)
T PTZ00454 143 TYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHH--TTATF---IRVVGS---- 213 (398)
T ss_pred CHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE---EEEehH----
Confidence 345688999888888876642110 01124567889999999999999999984 22222 222111
Q ss_pred HHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHhccCeEEEEEeCCCCC------Ccc----Ch-hhhHHhh---hc--CC
Q 038751 242 EFRIAKAIIEGLEGSLPNLRELNSLLEYIHTSIKEKKFFLILDDVWPD------DYS----KW-EPFHNCL---MN--GL 305 (915)
Q Consensus 242 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~------~~~----~~-~~l~~~l---~~--~~ 305 (915)
.+ .....+. ....+.+.+.......+.+|++|++..- ... .. ..+...+ .. ..
T Consensus 214 --~l----~~k~~ge-----~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~ 282 (398)
T PTZ00454 214 --EF----VQKYLGE-----GPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQT 282 (398)
T ss_pred --HH----HHHhcch-----hHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCC
Confidence 11 1111110 1112222333333567899999997421 000 01 1122222 21 22
Q ss_pred CCceEEEEcCchHHHhh--h---cCcCeEeCCCCCHHHHHHHHHHhH
Q 038751 306 CGSRILVTTRKETVARM--M---ESTDVISIKELSEQECWSLFKRFA 347 (915)
Q Consensus 306 ~gs~iivTtR~~~v~~~--~---~~~~~~~l~~L~~~~~~~lf~~~~ 347 (915)
.+..||.||........ . .-...+.+...+.++-..+|....
T Consensus 283 ~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~ 329 (398)
T PTZ00454 283 TNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTIT 329 (398)
T ss_pred CCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHH
Confidence 45678888876543221 1 124578899999998888887664
No 175
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.22 E-value=0.0077 Score=68.69 Aligned_cols=166 Identities=18% Similarity=0.216 Sum_probs=97.1
Q ss_pred cCccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHH
Q 038751 170 VSDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAI 249 (915)
Q Consensus 170 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 249 (915)
+.+.+|-++.+++|++.|.-..-...-.-+++.+||++|+|||+|++.+++ .....| +-++++.-.|..++-..=
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~--al~Rkf---vR~sLGGvrDEAEIRGHR 396 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKF---VRISLGGVRDEAEIRGHR 396 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHH--HhCCCE---EEEecCccccHHHhcccc
Confidence 456899999999999999654321233447999999999999999999998 455555 334555555554442111
Q ss_pred HHHhhCCCCCcccHHHHHHHHHHHhccCeEEEEEeCCCCCCcc----ChhhhHHhhhcCC-------------CCceE-E
Q 038751 250 IEGLEGSLPNLRELNSLLEYIHTSIKEKKFFLILDDVWPDDYS----KWEPFHNCLMNGL-------------CGSRI-L 311 (915)
Q Consensus 250 ~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~----~~~~l~~~l~~~~-------------~gs~i-i 311 (915)
...-+.. ...+.+.+++. +.++-+++||.+.-...+ .-..+...|.+.. -=|.| .
T Consensus 397 -----RTYIGam-PGrIiQ~mkka-~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmF 469 (782)
T COG0466 397 -----RTYIGAM-PGKIIQGMKKA-GVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMF 469 (782)
T ss_pred -----ccccccC-ChHHHHHHHHh-CCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEE
Confidence 1111111 12334444333 456779999998421111 1112333232211 12333 3
Q ss_pred EEcCch-H-HH-hhhcCcCeEeCCCCCHHHHHHHHHHhH
Q 038751 312 VTTRKE-T-VA-RMMESTDVISIKELSEQECWSLFKRFA 347 (915)
Q Consensus 312 vTtR~~-~-v~-~~~~~~~~~~l~~L~~~~~~~lf~~~~ 347 (915)
|||-+. + +. ..++...++++.+-+++|-.++-+++.
T Consensus 470 iaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 470 IATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred EeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 444432 2 22 234557899999999999888887764
No 176
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.21 E-value=0.00026 Score=55.56 Aligned_cols=57 Identities=23% Similarity=0.338 Sum_probs=45.9
Q ss_pred CCcceEEEeeeCCCCCC-CcccCccCccEEEEcCcCCCCCCC--CCCCCCCcceeeccccc
Q 038751 730 PDIKSLEIMVFKGRTPS-NWIGSLNKLKMLTLNSFVKCEIMP--PLGKLPSLEILRIWHMR 787 (915)
Q Consensus 730 ~~L~~L~l~~~~~~~~p-~~~~~l~~L~~L~L~~~~~~~~l~--~l~~Lp~L~~L~L~~~~ 787 (915)
|+|+.|++.+|....+| .++..+++|++|++++|.. ..++ .+..+|+|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l-~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNL-TSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSE-SEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCcc-CccCHHHHcCCCCCCEEeCcCCc
Confidence 57899999999877775 5788899999999998754 3333 37899999999998875
No 177
>PRK08118 topology modulation protein; Reviewed
Probab=97.17 E-value=0.00017 Score=69.85 Aligned_cols=35 Identities=34% Similarity=0.592 Sum_probs=27.6
Q ss_pred EEEEEEecCCCcHHHHHHHHhcccccc-cCCCeEEE
Q 038751 199 QIISLVGMGGIGKTTLAQFAYNDKDVI-ENFDKRIW 233 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~w 233 (915)
+.|.|+|++|+||||||+.+++..... -+||..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 358999999999999999999864433 45677765
No 178
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.17 E-value=1.7e-05 Score=81.74 Aligned_cols=146 Identities=18% Similarity=0.129 Sum_probs=73.8
Q ss_pred ccCCCCCCceEEEEecCCCCchhhhhhhhhHHHHhhHHHHHhhcCCCCCcceEEEeeeCCCCC-----CCcccCccCccE
Q 038751 683 LEKKKNLIDLILIFNEREESDDEKASEEMNEEKEAKHEAVCEALRPPPDIKSLEIMVFKGRTP-----SNWIGSLNKLKM 757 (915)
Q Consensus 683 l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-----p~~~~~l~~L~~ 757 (915)
..+.+.|+.+....|...+. ....+-..++.+++|+.+.+..|....- -..+..+++|+.
T Consensus 153 ~~~~~~Lrv~i~~rNrlen~---------------ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~Lev 217 (382)
T KOG1909|consen 153 AASKPKLRVFICGRNRLENG---------------GATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEV 217 (382)
T ss_pred cCCCcceEEEEeeccccccc---------------cHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCccee
Confidence 34556677777766653321 2223344555667777777776653211 111235777777
Q ss_pred EEEcCcCCCC----C-CCCCCCCCCcceeeccccccceEeCccccCCcccccccccccCCCcccccCcccceeeecCccc
Q 038751 758 LTLNSFVKCE----I-MPPLGKLPSLEILRIWHMRSVKRVGDEFLGMEISDHIHIHGTSSSSSVIAFPKLQKLELTGMDE 832 (915)
Q Consensus 758 L~L~~~~~~~----~-l~~l~~Lp~L~~L~L~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~f~~L~~L~l~~~~~ 832 (915)
|+|.+|.... . -..+..+|+|++|++++|. ++.-+..-+... -...+|+|+.|.+.++.-
T Consensus 218 Ldl~DNtft~egs~~LakaL~s~~~L~El~l~dcl-l~~~Ga~a~~~a--------------l~~~~p~L~vl~l~gNeI 282 (382)
T KOG1909|consen 218 LDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL-LENEGAIAFVDA--------------LKESAPSLEVLELAGNEI 282 (382)
T ss_pred eecccchhhhHHHHHHHHHhcccchheeecccccc-cccccHHHHHHH--------------HhccCCCCceeccCcchh
Confidence 7777664221 0 1124566777777777775 332221111000 012477777777776531
Q ss_pred ccc-cccCCCCcccCcccceeecccCc
Q 038751 833 LEE-WDFGNDDITIMPHIKSLYITYCE 858 (915)
Q Consensus 833 l~~-~~~~~~~~~~lp~L~~L~l~~c~ 858 (915)
-.. .......+...|.|..|++++|.
T Consensus 283 t~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 283 TRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred HHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 100 00000112356778888887773
No 179
>CHL00176 ftsH cell division protein; Validated
Probab=97.17 E-value=0.004 Score=73.05 Aligned_cols=179 Identities=16% Similarity=0.184 Sum_probs=95.9
Q ss_pred cCccccchHHHHHHHHH---Hhccccc---ccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHH
Q 038751 170 VSDVRGRDEEKNILKRK---LLCESNE---ERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEF 243 (915)
Q Consensus 170 ~~~~~Gr~~~~~~l~~~---L~~~~~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 243 (915)
-.++.|.++.++++.+. +...... +....+-|.++|++|+|||+||+.+++.. .. -|+.++..
T Consensus 182 f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~--~~-----p~i~is~s---- 250 (638)
T CHL00176 182 FRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA--EV-----PFFSISGS---- 250 (638)
T ss_pred HHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh--CC-----CeeeccHH----
Confidence 34688887665555444 3322110 11234568999999999999999998742 11 23333321
Q ss_pred HHHHHHHHHhhCCCCCcccHHHHHHHHHHHhccCeEEEEEeCCCCCC----------ccChhh-hHHhh---hc--CCCC
Q 038751 244 RIAKAIIEGLEGSLPNLRELNSLLEYIHTSIKEKKFFLILDDVWPDD----------YSKWEP-FHNCL---MN--GLCG 307 (915)
Q Consensus 244 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~----------~~~~~~-l~~~l---~~--~~~g 307 (915)
++. ....+ .....+...+.......+.+|++||+..-. ...+.. +...+ .. ...+
T Consensus 251 ~f~----~~~~g-----~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ 321 (638)
T CHL00176 251 EFV----EMFVG-----VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKG 321 (638)
T ss_pred HHH----HHhhh-----hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCC
Confidence 111 11100 011223344555556788999999994210 011112 22222 11 2345
Q ss_pred ceEEEEcCchHHHh-h-h---cCcCeEeCCCCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCCC
Q 038751 308 SRILVTTRKETVAR-M-M---ESTDVISIKELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKGL 373 (915)
Q Consensus 308 s~iivTtR~~~v~~-~-~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~ 373 (915)
..||.||....... . . .-...+.+...+.++-.++++.++..... .. ......+++.+.|.
T Consensus 322 ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~-~~----d~~l~~lA~~t~G~ 387 (638)
T CHL00176 322 VIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL-SP----DVSLELIARRTPGF 387 (638)
T ss_pred eeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc-ch----hHHHHHHHhcCCCC
Confidence 56777776644322 1 1 12467889999999999999887643211 11 12345677777773
No 180
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.14 E-value=0.00036 Score=68.28 Aligned_cols=100 Identities=23% Similarity=0.330 Sum_probs=51.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHhccC
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLRELNSLLEYIHTSIKEK 277 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 277 (915)
..-+.++|..|+|||.||..+.+.. ....+ .+.|++++ +++.. +..... ....+.. +. .+. +
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~-~~~g~-~v~f~~~~------~L~~~----l~~~~~-~~~~~~~---~~-~l~-~ 108 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEA-IRKGY-SVLFITAS------DLLDE----LKQSRS-DGSYEEL---LK-RLK-R 108 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHH-HHTT---EEEEEHH------HHHHH----HHCCHC-CTTHCHH---HH-HHH-T
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHh-ccCCc-ceeEeecC------ceecc----cccccc-ccchhhh---cC-ccc-c
Confidence 3569999999999999999988742 22233 35666543 34433 332211 1122222 22 222 2
Q ss_pred eEEEEEeCCCCCCccChhh--hHHhhhcC-CCCceEEEEcCc
Q 038751 278 KFFLILDDVWPDDYSKWEP--FHNCLMNG-LCGSRILVTTRK 316 (915)
Q Consensus 278 ~~LlVlDdvw~~~~~~~~~--l~~~l~~~-~~gs~iivTtR~ 316 (915)
-=||||||+.......|.. +...+... .++ .+||||..
T Consensus 109 ~dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~-~tIiTSN~ 149 (178)
T PF01695_consen 109 VDLLILDDLGYEPLSEWEAELLFEIIDERYERK-PTIITSNL 149 (178)
T ss_dssp SSCEEEETCTSS---HHHHHCTHHHHHHHHHT--EEEEEESS
T ss_pred ccEecccccceeeecccccccchhhhhHhhccc-CeEeeCCC
Confidence 3478899996544444432 22222221 223 57788874
No 181
>PRK08181 transposase; Validated
Probab=97.13 E-value=0.002 Score=67.22 Aligned_cols=101 Identities=23% Similarity=0.149 Sum_probs=55.7
Q ss_pred EEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHhccCe
Q 038751 199 QIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLRELNSLLEYIHTSIKEKK 278 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 278 (915)
.-+.++|++|+|||.||..+.+.. ......+.|+++ .+++..+..... ....+.. +... .+.
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a--~~~g~~v~f~~~------~~L~~~l~~a~~-----~~~~~~~---l~~l--~~~ 168 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLAL--IENGWRVLFTRT------TDLVQKLQVARR-----ELQLESA---IAKL--DKF 168 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHH--HHcCCceeeeeH------HHHHHHHHHHHh-----CCcHHHH---HHHH--hcC
Confidence 348999999999999999998742 222334556543 345554433211 1122222 2222 234
Q ss_pred EEEEEeCCCCCCccChh--hhHHhhhcCCCCceEEEEcCch
Q 038751 279 FFLILDDVWPDDYSKWE--PFHNCLMNGLCGSRILVTTRKE 317 (915)
Q Consensus 279 ~LlVlDdvw~~~~~~~~--~l~~~l~~~~~gs~iivTtR~~ 317 (915)
=|||+||+.......|. .+...+.....+..+||||..+
T Consensus 169 dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 169 DLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred CEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 59999999644333332 2444443322223688888754
No 182
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.11 E-value=0.01 Score=66.00 Aligned_cols=147 Identities=20% Similarity=0.213 Sum_probs=87.0
Q ss_pred EEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHhccCeE
Q 038751 200 IISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLRELNSLLEYIHTSIKEKKF 279 (915)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~ 279 (915)
++.|+|+-++||||+++.+... ..+. .+++..-+......-+.+. ...+...-..++.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~--~~~~---~iy~~~~d~~~~~~~l~d~-----------------~~~~~~~~~~~~~ 96 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKG--LLEE---IIYINFDDLRLDRIELLDL-----------------LRAYIELKEREKS 96 (398)
T ss_pred EEEEECCccccHHHHHHHHHhh--CCcc---eEEEEecchhcchhhHHHH-----------------HHHHHHhhccCCc
Confidence 9999999999999999776652 2121 4555544321111111111 1111111122778
Q ss_pred EEEEeCCCCCCccChhhhHHhhhcCCCCceEEEEcCchHHH-----hhh-cCcCeEeCCCCCHHHHHHHHHHhHcCCCCC
Q 038751 280 FLILDDVWPDDYSKWEPFHNCLMNGLCGSRILVTTRKETVA-----RMM-ESTDVISIKELSEQECWSLFKRFAFSGRSP 353 (915)
Q Consensus 280 LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~-----~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 353 (915)
+++||.|.. ...|......+....+. +|++|+-+.... ... +....+++-||+-.|...+-...
T Consensus 97 yifLDEIq~--v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~~~~------- 166 (398)
T COG1373 97 YIFLDEIQN--VPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLKGEE------- 166 (398)
T ss_pred eEEEecccC--chhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhcccc-------
Confidence 999999954 46798877777776555 888888875433 222 33668999999999987654300
Q ss_pred CchhHHHHHHHHHHHhcCCCchHHHH
Q 038751 354 TECEQLEEIGRKIVGKCKGLPLAAKT 379 (915)
Q Consensus 354 ~~~~~l~~~~~~i~~~c~G~PLai~~ 379 (915)
........ .-+-.-..||.|-++..
T Consensus 167 ~~~~~~~~-~f~~Yl~~GGfP~~v~~ 191 (398)
T COG1373 167 IEPSKLEL-LFEKYLETGGFPESVKA 191 (398)
T ss_pred cchhHHHH-HHHHHHHhCCCcHHHhC
Confidence 00111111 22233457899988754
No 183
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.10 E-value=0.014 Score=63.02 Aligned_cols=93 Identities=10% Similarity=0.118 Sum_probs=66.5
Q ss_pred cCeEEEEEeCCCCCCccChhhhHHhhhcCCCCceEEEEcCch-HHHh-hhcCcCeEeCCCCCHHHHHHHHHHhHcCCCCC
Q 038751 276 EKKFFLILDDVWPDDYSKWEPFHNCLMNGLCGSRILVTTRKE-TVAR-MMESTDVISIKELSEQECWSLFKRFAFSGRSP 353 (915)
Q Consensus 276 ~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 353 (915)
+++-++|+|++...+.+.++.+...+.....++.+|++|.++ .+.. .......+.+.+++.++..+.+.... .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~---~-- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG---V-- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC---C--
Confidence 455688999998777788899999998887888777766654 3332 23345789999999999999887752 1
Q ss_pred CchhHHHHHHHHHHHhcCCCchHHHHH
Q 038751 354 TECEQLEEIGRKIVGKCKGLPLAAKTI 380 (915)
Q Consensus 354 ~~~~~l~~~~~~i~~~c~G~PLai~~~ 380 (915)
.. ...++..++|.|..+..+
T Consensus 206 ~~-------~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 206 AD-------ADALLAEAGGAPLAALAL 225 (342)
T ss_pred Ch-------HHHHHHHcCCCHHHHHHH
Confidence 11 122567789999865544
No 184
>PRK13531 regulatory ATPase RavA; Provisional
Probab=97.10 E-value=0.0015 Score=72.52 Aligned_cols=152 Identities=14% Similarity=0.162 Sum_probs=84.8
Q ss_pred ccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHH-H
Q 038751 172 DVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAI-I 250 (915)
Q Consensus 172 ~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i-~ 250 (915)
.++||++.++.+...+....+ |.|.|++|+|||++|+.+.......+.|... -+.++ ...+++..+ +
T Consensus 21 ~i~gre~vI~lll~aalag~h--------VLL~GpPGTGKT~LAraLa~~~~~~~~F~~~-~~~ft---tp~DLfG~l~i 88 (498)
T PRK13531 21 GLYERSHAIRLCLLAALSGES--------VFLLGPPGIAKSLIARRLKFAFQNARAFEYL-MTRFS---TPEEVFGPLSI 88 (498)
T ss_pred hccCcHHHHHHHHHHHccCCC--------EEEECCCChhHHHHHHHHHHHhcccCcceee-eeeec---CcHHhcCcHHH
Confidence 489999999999999876533 8899999999999999998732222233311 11111 122322211 1
Q ss_pred HHhhCCCCCcccHHHHHHHHHHHhcc---CeEEEEEeCCCCCCccChhhhHHhhhcCC---------CCceEEEEcCchH
Q 038751 251 EGLEGSLPNLRELNSLLEYIHTSIKE---KKFFLILDDVWPDDYSKWEPFHNCLMNGL---------CGSRILVTTRKET 318 (915)
Q Consensus 251 ~~l~~~~~~~~~~~~~~~~l~~~l~~---k~~LlVlDdvw~~~~~~~~~l~~~l~~~~---------~gs~iivTtR~~~ 318 (915)
..... .+ .+.+..++ .--++++|+++...+.....+...+.... -..++++++.++-
T Consensus 89 ~~~~~-------~g----~f~r~~~G~L~~A~lLfLDEI~rasp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~L 157 (498)
T PRK13531 89 QALKD-------EG----RYQRLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNEL 157 (498)
T ss_pred hhhhh-------cC----chhhhcCCccccccEEeecccccCCHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCC
Confidence 11100 00 01111111 11289999999877777777777664321 1235666555532
Q ss_pred HH------hhhcC-cCeEeCCCCCH-HHHHHHHHHh
Q 038751 319 VA------RMMES-TDVISIKELSE-QECWSLFKRF 346 (915)
Q Consensus 319 v~------~~~~~-~~~~~l~~L~~-~~~~~lf~~~ 346 (915)
.. ..+.. .-.+.++++++ ++..+++...
T Consensus 158 PE~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 158 PEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred cccCCchHHhHhhEEEEEECCCCCchHHHHHHHHcc
Confidence 11 11111 33688899975 4447777653
No 185
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.10 E-value=0.019 Score=62.20 Aligned_cols=181 Identities=9% Similarity=-0.003 Sum_probs=103.0
Q ss_pred HHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhccccc---ccCCCeE-----EEEEeCCCCCHHHHHHHHH
Q 038751 179 EKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDV---IENFDKR-----IWVCVSDPFDEFRIAKAII 250 (915)
Q Consensus 179 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~~F~~~-----~wv~vs~~~~~~~~~~~i~ 250 (915)
.-+++.+.+..+ .-...+.+.|+.|+||+++|..+....-- ...-.|. -++..+..+|...+..
T Consensus 10 ~~~~l~~~~~~~-----rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p--- 81 (334)
T PRK07993 10 DYEQLVGSYQAG-----RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTP--- 81 (334)
T ss_pred HHHHHHHHHHcC-----CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEec---
Confidence 345566666432 24578889999999999999776542110 0000010 0111111122111100
Q ss_pred HHhhCCCCCcccHHHHHHHHHHH----hccCeEEEEEeCCCCCCccChhhhHHhhhcCCCCceEEEEcCchH-HHhh-hc
Q 038751 251 EGLEGSLPNLRELNSLLEYIHTS----IKEKKFFLILDDVWPDDYSKWEPFHNCLMNGLCGSRILVTTRKET-VARM-ME 324 (915)
Q Consensus 251 ~~l~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~-v~~~-~~ 324 (915)
......-.++++.+..... ..+++-++|+|++...+.+.-+.+...+.....++.+|++|.+.. +... .+
T Consensus 82 ----~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrS 157 (334)
T PRK07993 82 ----EKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRS 157 (334)
T ss_pred ----ccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHh
Confidence 0000012233333322211 135667999999976666778888888888778888888877643 3322 33
Q ss_pred CcCeEeCCCCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCCCchHHHHH
Q 038751 325 STDVISIKELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKGLPLAAKTI 380 (915)
Q Consensus 325 ~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~PLai~~~ 380 (915)
....+.+.++++++....+.... + .. .+.+..+++.++|.|..+..+
T Consensus 158 RCq~~~~~~~~~~~~~~~L~~~~-~----~~----~~~a~~~~~la~G~~~~Al~l 204 (334)
T PRK07993 158 RCRLHYLAPPPEQYALTWLSREV-T----MS----QDALLAALRLSAGAPGAALAL 204 (334)
T ss_pred ccccccCCCCCHHHHHHHHHHcc-C----CC----HHHHHHHHHHcCCCHHHHHHH
Confidence 45688999999999988886542 1 11 122567888999999755433
No 186
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.08 E-value=0.002 Score=78.65 Aligned_cols=136 Identities=22% Similarity=0.272 Sum_probs=79.1
Q ss_pred CccccchHHHHHHHHHHhcccc---cccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHH
Q 038751 171 SDVRGRDEEKNILKRKLLCESN---EERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAK 247 (915)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 247 (915)
..++|.+..++.+.+.+..... ..+....++.++|+.|+|||.||+.+... .-+.....+-++++...+ .
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~--l~~~~~~~~~~dmse~~~-----~ 638 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAEL--LYGGEQNLITINMSEFQE-----A 638 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHH--HhCCCcceEEEeHHHhhh-----h
Confidence 4689999999999998864311 12345568999999999999999888663 211112222223222111 1
Q ss_pred HHHHHhhCCCCCc---ccHHHHHHHHHHHhccCeEEEEEeCCCCCCccChhhhHHhhhcCC-----------CCceEEEE
Q 038751 248 AIIEGLEGSLPNL---RELNSLLEYIHTSIKEKKFFLILDDVWPDDYSKWEPFHNCLMNGL-----------CGSRILVT 313 (915)
Q Consensus 248 ~i~~~l~~~~~~~---~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iivT 313 (915)
.-...+.+..++. .....+...+++ ...-+|+||++...++..++.+...+..+. ..+-||+|
T Consensus 639 ~~~~~l~g~~~gyvg~~~~g~L~~~v~~---~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~T 715 (852)
T TIGR03345 639 HTVSRLKGSPPGYVGYGEGGVLTEAVRR---KPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLT 715 (852)
T ss_pred hhhccccCCCCCcccccccchHHHHHHh---CCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEe
Confidence 1112222332222 122223333332 345699999997667777777777776553 45667777
Q ss_pred cCc
Q 038751 314 TRK 316 (915)
Q Consensus 314 tR~ 316 (915)
|..
T Consensus 716 SNl 718 (852)
T TIGR03345 716 SNA 718 (852)
T ss_pred CCC
Confidence 764
No 187
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.05 E-value=2.5e-05 Score=82.28 Aligned_cols=120 Identities=18% Similarity=0.249 Sum_probs=83.6
Q ss_pred CccCccEEEEcCcCCCCCCC--CC-CCCCCcceeeccccccceEeCccccCCcccccccccccCCCcccccCcccceeee
Q 038751 751 SLNKLKMLTLNSFVKCEIMP--PL-GKLPSLEILRIWHMRSVKRVGDEFLGMEISDHIHIHGTSSSSSVIAFPKLQKLEL 827 (915)
Q Consensus 751 ~l~~L~~L~L~~~~~~~~l~--~l-~~Lp~L~~L~L~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~f~~L~~L~l 827 (915)
.+..|+.|+.++|......+ .+ .+.++|++|.+.+|..+...+....+ .+.+.|+.|.+
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~------------------rn~~~Le~l~~ 353 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLG------------------RNCPHLERLDL 353 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhh------------------cCChhhhhhcc
Confidence 57788888888887654332 23 35789999999999876655443332 37889999999
Q ss_pred cCcccccccccCCCCcccCcccceeecccCccccCC-----CcCCCCCCCcCeEeEcCCcchhHhhc
Q 038751 828 TGMDELEEWDFGNDDITIMPHIKSLYITYCEKLKSL-----PELLLRSTTLESLTIFGVPIVQESFK 889 (915)
Q Consensus 828 ~~~~~l~~~~~~~~~~~~lp~L~~L~l~~c~~L~~l-----p~~l~~l~~L~~L~l~~c~~l~~~~~ 889 (915)
.++.....-++..- -.+.|.|+.|.+++|.....- ..+-..+..|..+++.+||.+.+...
T Consensus 354 e~~~~~~d~tL~sl-s~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~L 419 (483)
T KOG4341|consen 354 EECGLITDGTLASL-SRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATL 419 (483)
T ss_pred cccceehhhhHhhh-ccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHH
Confidence 88754332222111 127899999999999766543 34445677899999999999877643
No 188
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.05 E-value=0.0083 Score=69.38 Aligned_cols=180 Identities=17% Similarity=0.139 Sum_probs=93.0
Q ss_pred cCccccchHHHHHHHHHHh---cccc---cccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHH
Q 038751 170 VSDVRGRDEEKNILKRKLL---CESN---EERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEF 243 (915)
Q Consensus 170 ~~~~~Gr~~~~~~l~~~L~---~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 243 (915)
-.+++|-+..++++.+.+. .... .+....+-+.++|++|+|||++|+.+++.. ... ++.++. .
T Consensus 54 ~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~--~~~-----~~~i~~----~ 122 (495)
T TIGR01241 54 FKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA--GVP-----FFSISG----S 122 (495)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc--CCC-----eeeccH----H
Confidence 3468888776666555443 2110 012234458899999999999999998742 222 232321 1
Q ss_pred HHHHHHHHHhhCCCCCcccHHHHHHHHHHHhccCeEEEEEeCCCCCC----------ccChhh----hHHhhhc--CCCC
Q 038751 244 RIAKAIIEGLEGSLPNLRELNSLLEYIHTSIKEKKFFLILDDVWPDD----------YSKWEP----FHNCLMN--GLCG 307 (915)
Q Consensus 244 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~----------~~~~~~----l~~~l~~--~~~g 307 (915)
++. ....+ .....+...+.......+.+|++||+..-. ...+.. +...+.. ...+
T Consensus 123 ~~~----~~~~g-----~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~ 193 (495)
T TIGR01241 123 DFV----EMFVG-----VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTG 193 (495)
T ss_pred HHH----HHHhc-----ccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCC
Confidence 111 11111 111223334444445677899999984310 001111 2212211 2234
Q ss_pred ceEEEEcCchHHH-----hhhcCcCeEeCCCCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCCCc
Q 038751 308 SRILVTTRKETVA-----RMMESTDVISIKELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKGLP 374 (915)
Q Consensus 308 s~iivTtR~~~v~-----~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~P 374 (915)
..||.||..+... +...-...+.+...+.++-.++|..+...... ....+ ...+++.+.|.-
T Consensus 194 v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~-~~~~~----l~~la~~t~G~s 260 (495)
T TIGR01241 194 VIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKL-APDVD----LKAVARRTPGFS 260 (495)
T ss_pred eEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCC-Ccchh----HHHHHHhCCCCC
Confidence 4566666654311 11122457889999998888888876533211 11112 235777777743
No 189
>PRK06921 hypothetical protein; Provisional
Probab=97.04 E-value=0.0032 Score=65.92 Aligned_cols=99 Identities=21% Similarity=0.287 Sum_probs=54.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcccccccC-CCeEEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHhcc
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYNDKDVIEN-FDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLRELNSLLEYIHTSIKE 276 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 276 (915)
...+.++|..|+|||+||..+++. +... -..+++++.. +++..+...+ +.....+.. +.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~--l~~~~g~~v~y~~~~------~l~~~l~~~~----------~~~~~~~~~-~~- 176 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANE--LMRKKGVPVLYFPFV------EGFGDLKDDF----------DLLEAKLNR-MK- 176 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HhhhcCceEEEEEHH------HHHHHHHHHH----------HHHHHHHHH-hc-
Confidence 456899999999999999999984 3222 3445676642 2333332221 111122222 22
Q ss_pred CeEEEEEeCCCC-----CCccChhh--hHHhhhcC-CCCceEEEEcCc
Q 038751 277 KKFFLILDDVWP-----DDYSKWEP--FHNCLMNG-LCGSRILVTTRK 316 (915)
Q Consensus 277 k~~LlVlDdvw~-----~~~~~~~~--l~~~l~~~-~~gs~iivTtR~ 316 (915)
+-=|||+||+.. +....|.. +...+... ..+..+||||..
T Consensus 177 ~~dlLiIDDl~~~~~g~e~~t~~~~~~lf~iin~R~~~~k~tIitsn~ 224 (266)
T PRK06921 177 KVEVLFIDDLFKPVNGKPRATEWQIEQMYSVLNYRYLNHKPILISSEL 224 (266)
T ss_pred CCCEEEEeccccccCCCccCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 345999999932 22334543 44333322 234567888864
No 190
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.03 E-value=0.00022 Score=73.76 Aligned_cols=219 Identities=20% Similarity=0.135 Sum_probs=121.4
Q ss_pred cceEEEEEEcccccc-----CccccCCCCceeEEEeccCCC-Ccee----ccccchhccccCCcceeeecCCCCCccccc
Q 038751 533 EKLRHLMLVLGFWAK-----FPFSIFDAKTLHSLILVYSSN-NQVA----ASPVLQGLFDQLTCLRALKIEDLPPTIKIP 602 (915)
Q Consensus 533 ~~~r~Lsl~~~~~~~-----~~~~~~~~~~Lr~L~l~~~~~-~lrv----~~~~lp~~i~~L~~Lr~L~l~~~~~~~~lP 602 (915)
..+..+.+++|.+.. .-..+.+.+.||.-.+++-+. .++. .+..+.+.+-...+|++|||++|-..-.-|
T Consensus 30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~ 109 (382)
T KOG1909|consen 30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGI 109 (382)
T ss_pred CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccch
Confidence 567888888887653 233455566777777665331 1111 233344555666789999999886543333
Q ss_pred cccCCCcCCCcccCcccCCcCCCCCCCCccCceeecccCCccCCCCcCCC----------CCcCccccccceeEcC--cc
Q 038751 603 KGLENLIHLRYLKLSMVPNGIERLTSLRTLSEFAVARVGGKYSSKSCNLE----------GLRPLNHLRGFLQISG--LG 670 (915)
Q Consensus 603 ~~i~~L~~Lr~L~l~~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~----------~L~~L~~L~~~L~i~~--l~ 670 (915)
..+..| |.++++|++|.+.+++.+... +..+. ...+-..|+ .+.... ++
T Consensus 110 ~~l~~l--------------l~s~~~L~eL~L~N~Glg~~a----g~~l~~al~~l~~~kk~~~~~~Lr-v~i~~rNrle 170 (382)
T KOG1909|consen 110 RGLEEL--------------LSSCTDLEELYLNNCGLGPEA----GGRLGRALFELAVNKKAASKPKLR-VFICGRNRLE 170 (382)
T ss_pred HHHHHH--------------HHhccCHHHHhhhcCCCChhH----HHHHHHHHHHHHHHhccCCCcceE-EEEeeccccc
Confidence 332211 333455555544443322110 11100 011111122 222211 11
Q ss_pred CCCChhhHhHhhccCCCCCCceEEEEecCCCCchhhhhhhhhHHHHhhHHHHHhhcCCCCCcceEEEeeeCCCC-----C
Q 038751 671 NVTDADEAKNAHLEKKKNLIDLILIFNEREESDDEKASEEMNEEKEAKHEAVCEALRPPPDIKSLEIMVFKGRT-----P 745 (915)
Q Consensus 671 ~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-----~ 745 (915)
+ .........+...+.|+.+.+..|.... . ......+.+..+++|+.|++..|.++. +
T Consensus 171 n--~ga~~~A~~~~~~~~leevr~~qN~I~~----------e-----G~~al~eal~~~~~LevLdl~DNtft~egs~~L 233 (382)
T KOG1909|consen 171 N--GGATALAEAFQSHPTLEEVRLSQNGIRP----------E-----GVTALAEALEHCPHLEVLDLRDNTFTLEGSVAL 233 (382)
T ss_pred c--ccHHHHHHHHHhccccceEEEecccccC----------c-----hhHHHHHHHHhCCcceeeecccchhhhHHHHHH
Confidence 1 1123344556677889999999886431 0 223456788889999999999997642 1
Q ss_pred CCcccCccCccEEEEcCcCCCC--CC---CC-CCCCCCcceeeccccc
Q 038751 746 SNWIGSLNKLKMLTLNSFVKCE--IM---PP-LGKLPSLEILRIWHMR 787 (915)
Q Consensus 746 p~~~~~l~~L~~L~L~~~~~~~--~l---~~-l~~Lp~L~~L~L~~~~ 787 (915)
...+..+++|+.|.+++|..-. .. .. -...|+|++|.+.+|.
T Consensus 234 akaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNe 281 (382)
T KOG1909|consen 234 AKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNE 281 (382)
T ss_pred HHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcch
Confidence 2223356799999999995321 11 01 1348999999999876
No 191
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.01 E-value=0.0014 Score=64.88 Aligned_cols=131 Identities=23% Similarity=0.252 Sum_probs=63.4
Q ss_pred ccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeC----CCC-----CH--
Q 038751 174 RGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVS----DPF-----DE-- 242 (915)
Q Consensus 174 ~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs----~~~-----~~-- 242 (915)
..+..+....++.|. ...++.+.|++|.|||.||-...-+.-..+.|+..+++.-. +.. +.
T Consensus 3 ~p~~~~Q~~~~~al~--------~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~e 74 (205)
T PF02562_consen 3 KPKNEEQKFALDALL--------NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEE 74 (205)
T ss_dssp ---SHHHHHHHHHHH--------H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS------
T ss_pred cCCCHHHHHHHHHHH--------hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHH
Confidence 345667777888886 24689999999999999997776654445788887776421 110 00
Q ss_pred --HHHHHHHHHHhhCCCCCcccHHHHHHHH------HHHhccC---eEEEEEeCCCCCCccChhhhHHhhhcCCCCceEE
Q 038751 243 --FRIAKAIIEGLEGSLPNLRELNSLLEYI------HTSIKEK---KFFLILDDVWPDDYSKWEPFHNCLMNGLCGSRIL 311 (915)
Q Consensus 243 --~~~~~~i~~~l~~~~~~~~~~~~~~~~l------~~~l~~k---~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~ii 311 (915)
...+.-+...+..-. .....+.+.+.= -.+++|+ .-+||+|++.+..+.+ +...+-..+.|||||
T Consensus 75 K~~p~~~p~~d~l~~~~-~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~---~k~ilTR~g~~skii 150 (205)
T PF02562_consen 75 KMEPYLRPIYDALEELF-GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEE---LKMILTRIGEGSKII 150 (205)
T ss_dssp ---TTTHHHHHHHTTTS--TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHH---HHHHHTTB-TT-EEE
T ss_pred HHHHHHHHHHHHHHHHh-ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHH---HHHHHcccCCCcEEE
Confidence 001112222221111 111222222100 0233444 3599999997655444 444455667899999
Q ss_pred EEcCc
Q 038751 312 VTTRK 316 (915)
Q Consensus 312 vTtR~ 316 (915)
++=-.
T Consensus 151 ~~GD~ 155 (205)
T PF02562_consen 151 ITGDP 155 (205)
T ss_dssp EEE--
T ss_pred EecCc
Confidence 98653
No 192
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.98 E-value=0.004 Score=66.50 Aligned_cols=122 Identities=16% Similarity=0.165 Sum_probs=70.3
Q ss_pred cchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhh
Q 038751 175 GRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLE 254 (915)
Q Consensus 175 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 254 (915)
+|....+...+++..-.. ....+-+.++|..|+|||.||..+++... +..+ .+.+++++ .++..+-....
T Consensus 135 ~~~~~~~~~~~fi~~~~~--~~~~~gl~L~G~~G~GKThLa~Aia~~l~-~~g~-~v~~~~~~------~l~~~lk~~~~ 204 (306)
T PRK08939 135 DRLDALMAALDFLEAYPP--GEKVKGLYLYGDFGVGKSYLLAAIANELA-KKGV-SSTLLHFP------EFIRELKNSIS 204 (306)
T ss_pred HHHHHHHHHHHHHHHhhc--cCCCCeEEEECCCCCCHHHHHHHHHHHHH-HcCC-CEEEEEHH------HHHHHHHHHHh
Confidence 454455555566543221 11345689999999999999999998532 2233 35566554 45555544432
Q ss_pred CCCCCcccHHHHHHHHHHHhccCeEEEEEeCCCCCCccChhh--hHHhh-hcC-CCCceEEEEcCc
Q 038751 255 GSLPNLRELNSLLEYIHTSIKEKKFFLILDDVWPDDYSKWEP--FHNCL-MNG-LCGSRILVTTRK 316 (915)
Q Consensus 255 ~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~--l~~~l-~~~-~~gs~iivTtR~ 316 (915)
.. ... +.+.. + .+-=||||||+..+....|.. +...+ ... ..+..+|+||--
T Consensus 205 ~~-----~~~---~~l~~-l-~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 205 DG-----SVK---EKIDA-V-KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred cC-----cHH---HHHHH-h-cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 11 122 22222 2 244589999997666667764 44433 322 245568888863
No 193
>PRK06526 transposase; Provisional
Probab=96.97 E-value=0.0016 Score=67.42 Aligned_cols=100 Identities=16% Similarity=0.116 Sum_probs=52.9
Q ss_pred EEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHhccCe
Q 038751 199 QIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLRELNSLLEYIHTSIKEKK 278 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 278 (915)
.-+.++|++|+|||+||..+..... +..+. +.|+ +..++...+..... . ......+.+. .+.
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~-~~g~~-v~f~------t~~~l~~~l~~~~~----~----~~~~~~l~~l--~~~ 160 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRAC-QAGHR-VLFA------TAAQWVARLAAAHH----A----GRLQAELVKL--GRY 160 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHH-HCCCc-hhhh------hHHHHHHHHHHHHh----c----CcHHHHHHHh--ccC
Confidence 4589999999999999999877432 22222 3333 23344444432211 1 1122223332 234
Q ss_pred EEEEEeCCCCCCccChh--hhHHhhhcC-CCCceEEEEcCch
Q 038751 279 FFLILDDVWPDDYSKWE--PFHNCLMNG-LCGSRILVTTRKE 317 (915)
Q Consensus 279 ~LlVlDdvw~~~~~~~~--~l~~~l~~~-~~gs~iivTtR~~ 317 (915)
-+||+||+.......+. .+...+... ..+ .+|+||..+
T Consensus 161 dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~-s~IitSn~~ 201 (254)
T PRK06526 161 PLLIVDEVGYIPFEPEAANLFFQLVSSRYERA-SLIVTSNKP 201 (254)
T ss_pred CEEEEcccccCCCCHHHHHHHHHHHHHHHhcC-CEEEEcCCC
Confidence 58999999643322232 233433322 234 488888754
No 194
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.97 E-value=0.0014 Score=66.39 Aligned_cols=35 Identities=26% Similarity=0.366 Sum_probs=28.3
Q ss_pred EEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEe
Q 038751 200 IISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCV 236 (915)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 236 (915)
.++|+|..|+|||||+..+.. .....|+.+.+++-
T Consensus 15 r~viIG~sGSGKT~li~~lL~--~~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLY--YLRHKFDHIFLITP 49 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHH--hhcccCCEEEEEec
Confidence 577999999999999988887 46678877766644
No 195
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.97 E-value=0.0031 Score=70.91 Aligned_cols=186 Identities=17% Similarity=0.178 Sum_probs=116.0
Q ss_pred CccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 038751 171 SDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAII 250 (915)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 250 (915)
++++|-+.-...|...+.... -..--...|+-|+||||+|+-++....-. -| ....+++.-...+.|-
T Consensus 16 ~evvGQe~v~~~L~nal~~~r-----i~hAYlfsG~RGvGKTt~Ari~AkalNC~------~~-~~~ePC~~C~~Ck~I~ 83 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGR-----IAHAYLFSGPRGVGKTTIARILAKALNCE------NG-PTAEPCGKCISCKEIN 83 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCc-----chhhhhhcCCCCcCchhHHHHHHHHhcCC------CC-CCCCcchhhhhhHhhh
Confidence 467999999999998886542 24556788999999999998887632111 11 1222333333333333
Q ss_pred HHhhCCCCCc--------ccHHHHHHHHHHHh----ccCeEEEEEeCCCCCCccChhhhHHhhhcCCCCceEEEEcCch-
Q 038751 251 EGLEGSLPNL--------RELNSLLEYIHTSI----KEKKFFLILDDVWPDDYSKWEPFHNCLMNGLCGSRILVTTRKE- 317 (915)
Q Consensus 251 ~~l~~~~~~~--------~~~~~~~~~l~~~l----~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~- 317 (915)
.. ...+. ..+++..+.+.+.. +++.=+.|+|+|+--....|+.+...+.......+.|+.|.++
T Consensus 84 ~g---~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~ 160 (515)
T COG2812 84 EG---SLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQ 160 (515)
T ss_pred cC---CcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcC
Confidence 22 11111 11222222222211 3555689999998777788999988888877788877777764
Q ss_pred HHHh-hhcCcCeEeCCCCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCCCch
Q 038751 318 TVAR-MMESTDVISIKELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKGLPL 375 (915)
Q Consensus 318 ~v~~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~PL 375 (915)
.+.. .......+.++.++.++....+...+....-..+... ...|++..+|...
T Consensus 161 Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e~~a----L~~ia~~a~Gs~R 215 (515)
T COG2812 161 KIPNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIEEDA----LSLIARAAEGSLR 215 (515)
T ss_pred cCchhhhhccccccccCCCHHHHHHHHHHHHHhcCCccCHHH----HHHHHHHcCCChh
Confidence 3332 3445779999999999999998887755443333333 3446666777554
No 196
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.95 E-value=0.0017 Score=67.40 Aligned_cols=82 Identities=23% Similarity=0.301 Sum_probs=49.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHhccC
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLRELNSLLEYIHTSIKEK 277 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 277 (915)
..-+.++|.+|+|||.||.++.+... +..+ .+.++++. ++...+...... +.....|.+.++ +
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g~-sv~f~~~~------el~~~Lk~~~~~--------~~~~~~l~~~l~-~ 167 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELL-KAGI-SVLFITAP------DLLSKLKAAFDE--------GRLEEKLLRELK-K 167 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHH-HcCC-eEEEEEHH------HHHHHHHHHHhc--------CchHHHHHHHhh-c
Confidence 34589999999999999999998643 3333 34566554 455555444322 112223333232 2
Q ss_pred eEEEEEeCCCCCCccChhh
Q 038751 278 KFFLILDDVWPDDYSKWEP 296 (915)
Q Consensus 278 ~~LlVlDdvw~~~~~~~~~ 296 (915)
-=||||||+.......|..
T Consensus 168 ~dlLIiDDlG~~~~~~~~~ 186 (254)
T COG1484 168 VDLLIIDDIGYEPFSQEEA 186 (254)
T ss_pred CCEEEEecccCccCCHHHH
Confidence 3389999997655556653
No 197
>PRK07261 topology modulation protein; Provisional
Probab=96.95 E-value=0.0022 Score=62.42 Aligned_cols=34 Identities=26% Similarity=0.437 Sum_probs=24.0
Q ss_pred EEEEEecCCCcHHHHHHHHhccccc-ccCCCeEEE
Q 038751 200 IISLVGMGGIGKTTLAQFAYNDKDV-IENFDKRIW 233 (915)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F~~~~w 233 (915)
.|.|+|++|+||||||+.+...... .-+.|...|
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~ 36 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHF 36 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEe
Confidence 4889999999999999998764221 123455555
No 198
>PHA00729 NTP-binding motif containing protein
Probab=96.91 E-value=0.0065 Score=60.87 Aligned_cols=25 Identities=32% Similarity=0.303 Sum_probs=21.8
Q ss_pred ceEEEEEEecCCCcHHHHHHHHhcc
Q 038751 197 AVQIISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
+...|.|+|.+|+||||||..+.+.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 4567899999999999999998873
No 199
>PLN03150 hypothetical protein; Provisional
Probab=96.90 E-value=0.00068 Score=80.40 Aligned_cols=79 Identities=24% Similarity=0.191 Sum_probs=57.7
Q ss_pred ceEEEEEEcccccc-CccccCCCCceeEEEeccCCCCceeccccchhccccCCcceeeecCCCCCccccccccCCCcCCC
Q 038751 534 KLRHLMLVLGFWAK-FPFSIFDAKTLHSLILVYSSNNQVAASPVLQGLFDQLTCLRALKIEDLPPTIKIPKGLENLIHLR 612 (915)
Q Consensus 534 ~~r~Lsl~~~~~~~-~~~~~~~~~~Lr~L~l~~~~~~lrv~~~~lp~~i~~L~~Lr~L~l~~~~~~~~lP~~i~~L~~Lr 612 (915)
.++.|++.++.+.. .|..+..+++|+.|.+.+|. ....+|..++.|.+|++|+|++|.....+|..+++|.+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~-----l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~ 493 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNS-----IRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR 493 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCc-----ccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCC
Confidence 36667777766653 66677778888888887774 2346777788888888888888777767787788888888
Q ss_pred cccCc
Q 038751 613 YLKLS 617 (915)
Q Consensus 613 ~L~l~ 617 (915)
+|+++
T Consensus 494 ~L~Ls 498 (623)
T PLN03150 494 ILNLN 498 (623)
T ss_pred EEECc
Confidence 88754
No 200
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.89 E-value=0.0058 Score=62.72 Aligned_cols=103 Identities=15% Similarity=0.151 Sum_probs=57.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHhccC
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLRELNSLLEYIHTSIKEK 277 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 277 (915)
...+.++|.+|+|||+||..+++... ..-..++++++ .++...+-..... .....+. +.+.+. +
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~--~~g~~v~~it~------~~l~~~l~~~~~~---~~~~~~~----~l~~l~-~ 162 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELL--LRGKSVLIITV------ADIMSAMKDTFSN---SETSEEQ----LLNDLS-N 162 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEEH------HHHHHHHHHHHhh---ccccHHH----HHHHhc-c
Confidence 35789999999999999999998532 22234556643 3444444333321 1111222 223343 3
Q ss_pred eEEEEEeCCCCCCccChhh--hHHhhhcC-CCCceEEEEcCc
Q 038751 278 KFFLILDDVWPDDYSKWEP--FHNCLMNG-LCGSRILVTTRK 316 (915)
Q Consensus 278 ~~LlVlDdvw~~~~~~~~~--l~~~l~~~-~~gs~iivTtR~ 316 (915)
.=+||+||+.......|.. +...+... ...-.+||||..
T Consensus 163 ~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 163 VDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 4488889997655555664 33333322 223457777753
No 201
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.86 E-value=0.0043 Score=76.13 Aligned_cols=138 Identities=17% Similarity=0.235 Sum_probs=78.3
Q ss_pred CccccchHHHHHHHHHHhcccc---cccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHH
Q 038751 171 SDVRGRDEEKNILKRKLLCESN---EERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAK 247 (915)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 247 (915)
..++|-+..++.+.+.+..... ..+....++.++|+.|+|||+||+.+.+. .-+.-...+-+..+...+...+.
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~--l~~~~~~~~~~d~s~~~~~~~~~- 585 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASY--FFGSEDAMIRLDMSEYMEKHTVS- 585 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHH--hcCCccceEEEEchhccccccHH-
Confidence 4689999999999888853221 12233456789999999999999888762 11111223334444322211111
Q ss_pred HHHHHhhCCCCCcccHHHHHHHHHHHhccCe-EEEEEeCCCCCCccChhhhHHhhhcCC-----------CCceEEEEcC
Q 038751 248 AIIEGLEGSLPNLRELNSLLEYIHTSIKEKK-FFLILDDVWPDDYSKWEPFHNCLMNGL-----------CGSRILVTTR 315 (915)
Q Consensus 248 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~-~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iivTtR 315 (915)
.+.+..++....++ ...+.+.++.++ -+++||++...++..++.+...+..+. ..+.||+||.
T Consensus 586 ----~l~g~~~gyvg~~~-~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn 660 (821)
T CHL00095 586 ----KLIGSPPGYVGYNE-GGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSN 660 (821)
T ss_pred ----HhcCCCCcccCcCc-cchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEeCC
Confidence 12222222111111 112334444455 488899997777777888887776542 3556777776
Q ss_pred c
Q 038751 316 K 316 (915)
Q Consensus 316 ~ 316 (915)
.
T Consensus 661 ~ 661 (821)
T CHL00095 661 L 661 (821)
T ss_pred c
Confidence 4
No 202
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.84 E-value=0.054 Score=53.67 Aligned_cols=108 Identities=24% Similarity=0.359 Sum_probs=66.0
Q ss_pred cCccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHH
Q 038751 170 VSDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAI 249 (915)
Q Consensus 170 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 249 (915)
-..++|.+..++.+++--..-.. .....-|.+||.-|+||+.|++++.+. +....-. -|-|..
T Consensus 59 L~~l~Gvd~qk~~L~~NT~~F~~--G~pANnVLLwGaRGtGKSSLVKA~~~e--~~~~glr--LVEV~k----------- 121 (287)
T COG2607 59 LADLVGVDRQKEALVRNTEQFAE--GLPANNVLLWGARGTGKSSLVKALLNE--YADEGLR--LVEVDK----------- 121 (287)
T ss_pred HHHHhCchHHHHHHHHHHHHHHc--CCcccceEEecCCCCChHHHHHHHHHH--HHhcCCe--EEEEcH-----------
Confidence 34689999888888765433221 123345789999999999999999883 3333322 222222
Q ss_pred HHHhhCCCCCcccHHHHHHHHHHHhccCeEEEEEeCCC-CCCccChhhhHHhhhcC
Q 038751 250 IEGLEGSLPNLRELNSLLEYIHTSIKEKKFFLILDDVW-PDDYSKWEPFHNCLMNG 304 (915)
Q Consensus 250 ~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw-~~~~~~~~~l~~~l~~~ 304 (915)
.+..++..+.+.|+. ...||.|..||+- ++....+..++..+..+
T Consensus 122 --------~dl~~Lp~l~~~Lr~--~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ 167 (287)
T COG2607 122 --------EDLATLPDLVELLRA--RPEKFILFCDDLSFEEGDDAYKALKSALEGG 167 (287)
T ss_pred --------HHHhhHHHHHHHHhc--CCceEEEEecCCCCCCCchHHHHHHHHhcCC
Confidence 111222223333332 3679999999983 33445677788887754
No 203
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.81 E-value=0.01 Score=71.06 Aligned_cols=133 Identities=17% Similarity=0.221 Sum_probs=75.9
Q ss_pred ccccchHHHHHHHHHHhcccc---cccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHH
Q 038751 172 DVRGRDEEKNILKRKLLCESN---EERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKA 248 (915)
Q Consensus 172 ~~~Gr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 248 (915)
.++|-++.++.|.+.+..... ........+.++|++|+|||++|+.+... ... ..+.++.+...... .
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~--l~~---~~i~id~se~~~~~----~ 529 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA--LGI---ELLRFDMSEYMERH----T 529 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHH--hCC---CcEEeechhhcccc----c
Confidence 478989888888888763211 01234567899999999999999998773 222 23344444322111 1
Q ss_pred HHHHhhCCCCCcccHHHHHHHHHHHhccC-eEEEEEeCCCCCCccChhhhHHhhhcCC-----------CCceEEEEcC
Q 038751 249 IIEGLEGSLPNLRELNSLLEYIHTSIKEK-KFFLILDDVWPDDYSKWEPFHNCLMNGL-----------CGSRILVTTR 315 (915)
Q Consensus 249 i~~~l~~~~~~~~~~~~~~~~l~~~l~~k-~~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iivTtR 315 (915)
+..+-+..++....+ ....+.+.+..+ .-+|+||++....++.++.+...+..+. ..+-||+||.
T Consensus 530 -~~~LiG~~~gyvg~~-~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN 606 (758)
T PRK11034 530 -VSRLIGAPPGYVGFD-QGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTN 606 (758)
T ss_pred -HHHHcCCCCCccccc-ccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCC
Confidence 122223222211100 111233333333 4599999997766777777777666431 2344777775
No 204
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.81 E-value=0.0012 Score=70.62 Aligned_cols=50 Identities=22% Similarity=0.243 Sum_probs=42.7
Q ss_pred ccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcc
Q 038751 172 DVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 172 ~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
+++|-++.++++++++.....+.+...+++.++|++|+||||||+.+.+.
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~ 101 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRG 101 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 69999999999999997765433445689999999999999999999874
No 205
>PRK09183 transposase/IS protein; Provisional
Probab=96.80 E-value=0.0054 Score=64.05 Aligned_cols=101 Identities=19% Similarity=0.201 Sum_probs=52.5
Q ss_pred EEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHhccCe
Q 038751 199 QIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLRELNSLLEYIHTSIKEKK 278 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 278 (915)
..+.|+|++|+|||+||..+..... ...+ .+.+++ ..++...+...... . .+...+.+.+ .+.
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~-~~G~-~v~~~~------~~~l~~~l~~a~~~-----~---~~~~~~~~~~-~~~ 165 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAV-RAGI-KVRFTT------AADLLLQLSTAQRQ-----G---RYKTTLQRGV-MAP 165 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHH-HcCC-eEEEEe------HHHHHHHHHHHHHC-----C---cHHHHHHHHh-cCC
Confidence 4577999999999999999876422 2222 233443 22333333222111 0 1222232322 344
Q ss_pred EEEEEeCCCCCCccChh--hhHHhhhcC-CCCceEEEEcCch
Q 038751 279 FFLILDDVWPDDYSKWE--PFHNCLMNG-LCGSRILVTTRKE 317 (915)
Q Consensus 279 ~LlVlDdvw~~~~~~~~--~l~~~l~~~-~~gs~iivTtR~~ 317 (915)
-++|+||+.......+. .+...+... ..++ +|+||...
T Consensus 166 dlLiiDdlg~~~~~~~~~~~lf~li~~r~~~~s-~iiTsn~~ 206 (259)
T PRK09183 166 RLLIIDEIGYLPFSQEEANLFFQVIAKRYEKGS-MILTSNLP 206 (259)
T ss_pred CEEEEcccccCCCChHHHHHHHHHHHHHHhcCc-EEEecCCC
Confidence 59999999653333333 244433322 2344 78888743
No 206
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.76 E-value=0.021 Score=64.98 Aligned_cols=166 Identities=15% Similarity=0.183 Sum_probs=93.0
Q ss_pred cCccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHH
Q 038751 170 VSDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAI 249 (915)
Q Consensus 170 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 249 (915)
+.+.+|.++-+++|++++.-..-.++-+-+++..+|++|||||.+|+.++. .....| +-++|+.-.|+.++-..-
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~--ALnRkF---fRfSvGG~tDvAeIkGHR 484 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIAR--ALNRKF---FRFSVGGMTDVAEIKGHR 484 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHH--HhCCce---EEEeccccccHHhhcccc
Confidence 456789999999999998654322344568999999999999999999988 444444 234667666665542211
Q ss_pred HHHhhCCCCCcccHHHHHHHHHHHhccCeEEEEEeCCCCCCc----cChhhhHHhhhcC-------------CCCceEEE
Q 038751 250 IEGLEGSLPNLRELNSLLEYIHTSIKEKKFFLILDDVWPDDY----SKWEPFHNCLMNG-------------LCGSRILV 312 (915)
Q Consensus 250 ~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~----~~~~~l~~~l~~~-------------~~gs~iiv 312 (915)
- ..-+.+ ...+++.|++. +..+-|+.+|.|..--. +.-..+...|.+. --=|+|++
T Consensus 485 R-----TYVGAM-PGkiIq~LK~v-~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLF 557 (906)
T KOG2004|consen 485 R-----TYVGAM-PGKIIQCLKKV-KTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLF 557 (906)
T ss_pred e-----eeeccC-ChHHHHHHHhh-CCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheEE
Confidence 1 111111 23344444443 34456888898832100 0011222222211 11355554
Q ss_pred EcCchHHH----hhhcCcCeEeCCCCCHHHHHHHHHHhH
Q 038751 313 TTRKETVA----RMMESTDVISIKELSEQECWSLFKRFA 347 (915)
Q Consensus 313 TtR~~~v~----~~~~~~~~~~l~~L~~~~~~~lf~~~~ 347 (915)
...-..+. ...+....|++.+...+|-.++-.++.
T Consensus 558 icTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 558 ICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred EEeccccccCChhhhhhhheeeccCccHHHHHHHHHHhh
Confidence 32211111 112335678888888777777666554
No 207
>PRK04132 replication factor C small subunit; Provisional
Probab=96.74 E-value=0.035 Score=66.75 Aligned_cols=155 Identities=12% Similarity=0.038 Sum_probs=96.7
Q ss_pred cCCCcHHHHHHHHhcccccccCCC-eEEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHhccCeEEEEEe
Q 038751 206 MGGIGKTTLAQFAYNDKDVIENFD-KRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLRELNSLLEYIHTSIKEKKFFLILD 284 (915)
Q Consensus 206 ~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlD 284 (915)
+.++||||+|+.++++. ..+.++ .++-++.++..... ..++++..+....+- -..+.-++|+|
T Consensus 574 Ph~lGKTT~A~ala~~l-~g~~~~~~~lElNASd~rgid-~IR~iIk~~a~~~~~--------------~~~~~KVvIID 637 (846)
T PRK04132 574 PTVLHNTTAALALAREL-FGENWRHNFLELNASDERGIN-VIREKVKEFARTKPI--------------GGASFKIIFLD 637 (846)
T ss_pred CCcccHHHHHHHHHHhh-hcccccCeEEEEeCCCcccHH-HHHHHHHHHHhcCCc--------------CCCCCEEEEEE
Confidence 77899999999998842 112222 35566667644443 333444333211110 01245799999
Q ss_pred CCCCCCccChhhhHHhhhcCCCCceEEEEcCch-HHHhhh-cCcCeEeCCCCCHHHHHHHHHHhHcCCCCCCchhHHHHH
Q 038751 285 DVWPDDYSKWEPFHNCLMNGLCGSRILVTTRKE-TVARMM-ESTDVISIKELSEQECWSLFKRFAFSGRSPTECEQLEEI 362 (915)
Q Consensus 285 dvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~ 362 (915)
+++..+....+.++..+......+++|+++.+. .+...+ .....+++.+++.++....+...+...+-... .+.
T Consensus 638 EaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i~----~e~ 713 (846)
T PRK04132 638 EADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELT----EEG 713 (846)
T ss_pred CcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCCC----HHH
Confidence 998776667888888887655667777766654 332222 33578999999999998888776533221111 235
Q ss_pred HHHHHHhcCCCchHHHHH
Q 038751 363 GRKIVGKCKGLPLAAKTI 380 (915)
Q Consensus 363 ~~~i~~~c~G~PLai~~~ 380 (915)
...|++.++|.+..+..+
T Consensus 714 L~~Ia~~s~GDlR~AIn~ 731 (846)
T PRK04132 714 LQAILYIAEGDMRRAINI 731 (846)
T ss_pred HHHHHHHcCCCHHHHHHH
Confidence 677899999988655443
No 208
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.73 E-value=0.01 Score=58.01 Aligned_cols=149 Identities=14% Similarity=0.171 Sum_probs=79.0
Q ss_pred CccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCC-CeEEEEEeCCCCCHHHHHHHH
Q 038751 171 SDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENF-DKRIWVCVSDPFDEFRIAKAI 249 (915)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~vs~~~~~~~~~~~i 249 (915)
.++||-++.++++.-... +++.+-+.|.||+|+||||-+..+++.. ....+ +.+.=.+.
T Consensus 27 ~dIVGNe~tv~rl~via~------~gnmP~liisGpPG~GKTTsi~~LAr~L-LG~~~ke~vLELNA------------- 86 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAK------EGNMPNLIISGPPGTGKTTSILCLAREL-LGDSYKEAVLELNA------------- 86 (333)
T ss_pred HHhhCCHHHHHHHHHHHH------cCCCCceEeeCCCCCchhhHHHHHHHHH-hChhhhhHhhhccC-------------
Confidence 468999998888877663 3467889999999999999887776621 11111 11111122
Q ss_pred HHHhhCCCCCcccHHHHHHHHHHHh-------ccCeEEEEEeCCCCCCccChhhhHHhhhcCCCCceEEEEcC-chHHHh
Q 038751 250 IEGLEGSLPNLRELNSLLEYIHTSI-------KEKKFFLILDDVWPDDYSKWEPFHNCLMNGLCGSRILVTTR-KETVAR 321 (915)
Q Consensus 250 ~~~l~~~~~~~~~~~~~~~~l~~~l-------~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR-~~~v~~ 321 (915)
.+....+-+...++-+. .++.-.+|||...+.....-..++....--.+.+|..+... +..+-.
T Consensus 87 --------SdeRGIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~gAQQAlRRtMEiyS~ttRFalaCN~s~KIiE 158 (333)
T KOG0991|consen 87 --------SDERGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAGAQQALRRTMEIYSNTTRFALACNQSEKIIE 158 (333)
T ss_pred --------ccccccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhHHHHHHHHHHHHHcccchhhhhhcchhhhhh
Confidence 22223333334443322 24556889999965444444455555443333333332221 111111
Q ss_pred hhcC-cCeEeCCCCCHHHHHHHHHHhH
Q 038751 322 MMES-TDVISIKELSEQECWSLFKRFA 347 (915)
Q Consensus 322 ~~~~-~~~~~l~~L~~~~~~~lf~~~~ 347 (915)
.... .-..+...|++.+...=+...+
T Consensus 159 PIQSRCAiLRysklsd~qiL~Rl~~v~ 185 (333)
T KOG0991|consen 159 PIQSRCAILRYSKLSDQQILKRLLEVA 185 (333)
T ss_pred hHHhhhHhhhhcccCHHHHHHHHHHHH
Confidence 1111 2245556677766655554444
No 209
>PLN03150 hypothetical protein; Provisional
Probab=96.73 E-value=0.00094 Score=79.20 Aligned_cols=74 Identities=23% Similarity=0.242 Sum_probs=57.7
Q ss_pred HhhcCCCCCcceEEEeeeCCC-CCCCcccCccCccEEEEcCcCCCCCCCC-CCCCCCcceeeccccccceEeCccc
Q 038751 723 CEALRPPPDIKSLEIMVFKGR-TPSNWIGSLNKLKMLTLNSFVKCEIMPP-LGKLPSLEILRIWHMRSVKRVGDEF 796 (915)
Q Consensus 723 ~~~l~~~~~L~~L~l~~~~~~-~~p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~Lp~L~~L~L~~~~~l~~~~~~~ 796 (915)
+..+..+++|+.|++++|... .+|..++.+++|+.|+|++|.....+|. +++|++|++|+|++|.....+|..+
T Consensus 435 p~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l 510 (623)
T PLN03150 435 PNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510 (623)
T ss_pred CHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHH
Confidence 445667888999999988775 5787888899999999998876666665 7889999999998887445565543
No 210
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.72 E-value=0.0052 Score=62.28 Aligned_cols=48 Identities=17% Similarity=0.215 Sum_probs=36.1
Q ss_pred ceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHH
Q 038751 197 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAK 247 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 247 (915)
.-+++.|+|++|+|||++|.++... ....-..++|++... +....+.+
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~--~~~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVN--AARQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCC-CCHHHHHH
Confidence 4589999999999999999887763 223346789999876 66555443
No 211
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.72 E-value=0.007 Score=65.17 Aligned_cols=101 Identities=13% Similarity=0.020 Sum_probs=64.6
Q ss_pred HHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhccccccc-CCCe-EEEEEeCCC-CCHHHHHHHHHHHhhC
Q 038751 179 EKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIE-NFDK-RIWVCVSDP-FDEFRIAKAIIEGLEG 255 (915)
Q Consensus 179 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F~~-~~wv~vs~~-~~~~~~~~~i~~~l~~ 255 (915)
-..++++.+..-. .-..+.|+|.+|+|||||++.+.+. +.. +=+. ++|+.+.+. ..+.++.+.+...+..
T Consensus 119 ~~~RvID~l~PiG-----kGQR~LIvG~pGtGKTTLl~~la~~--i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vva 191 (380)
T PRK12608 119 LSMRVVDLVAPIG-----KGQRGLIVAPPRAGKTVLLQQIAAA--VAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYA 191 (380)
T ss_pred hhHhhhhheeecC-----CCceEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEe
Confidence 3456888887542 2245689999999999999998873 222 2233 477777665 5678888888776665
Q ss_pred CCCCcccHH-----HHHHHHHHHh--ccCeEEEEEeCC
Q 038751 256 SLPNLRELN-----SLLEYIHTSI--KEKKFFLILDDV 286 (915)
Q Consensus 256 ~~~~~~~~~-----~~~~~l~~~l--~~k~~LlVlDdv 286 (915)
...+..... .....+.+++ ++++.+||+|++
T Consensus 192 st~de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsl 229 (380)
T PRK12608 192 STFDRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSL 229 (380)
T ss_pred ecCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCc
Confidence 432222111 1122222333 589999999998
No 212
>PRK04296 thymidine kinase; Provisional
Probab=96.67 E-value=0.0038 Score=61.97 Aligned_cols=112 Identities=14% Similarity=0.037 Sum_probs=59.9
Q ss_pred EEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhhCCCCC--cccHHHHHHHHHHHhcc
Q 038751 199 QIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPN--LRELNSLLEYIHTSIKE 276 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~l~~~l~~ 276 (915)
.++.|+|..|.||||+|..+... ...+-..++.+. ..++.......+..+++..... ....+++...+.+ ..+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~--~~~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~ 77 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYN--YEERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGE 77 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHH--HHHcCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCC
Confidence 47889999999999999777663 222323333331 2222222233445555432221 2234445555544 233
Q ss_pred CeEEEEEeCCCCCCccChhhhHHhhhcCCCCceEEEEcCch
Q 038751 277 KKFFLILDDVWPDDYSKWEPFHNCLMNGLCGSRILVTTRKE 317 (915)
Q Consensus 277 k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~ 317 (915)
+.-+||+|.+.--+.++...+...+ ...|..||+|.+..
T Consensus 78 ~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~ 116 (190)
T PRK04296 78 KIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDT 116 (190)
T ss_pred CCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCc
Confidence 4458999999432222122222222 34578899998874
No 213
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.67 E-value=0.0071 Score=70.07 Aligned_cols=44 Identities=27% Similarity=0.409 Sum_probs=35.5
Q ss_pred CccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhc
Q 038751 171 SDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
.+++|.+..++.+...+... ...-|.|+|++|+|||++|+.+++
T Consensus 65 ~~iiGqs~~i~~l~~al~~~------~~~~vLi~Ge~GtGKt~lAr~i~~ 108 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALCGP------NPQHVIIYGPPGVGKTAAARLVLE 108 (531)
T ss_pred HHeeCcHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHH
Confidence 36899999999998877543 234567999999999999999976
No 214
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.64 E-value=0.0059 Score=58.99 Aligned_cols=132 Identities=17% Similarity=0.190 Sum_probs=65.7
Q ss_pred cccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCC-CCHHHHHHHHHH
Q 038751 173 VRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDP-FDEFRIAKAIIE 251 (915)
Q Consensus 173 ~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~ 251 (915)
++|....++++++.+..... ...-|.|+|..|+||+.+|+.+.+... . ...-||.+.-. .+...+-..+.-
T Consensus 1 liG~s~~m~~~~~~~~~~a~----~~~pVlI~GE~GtGK~~lA~~IH~~s~--r--~~~pfi~vnc~~~~~~~~e~~LFG 72 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAAS----SDLPVLITGETGTGKELLARAIHNNSP--R--KNGPFISVNCAALPEELLESELFG 72 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTT----STS-EEEECSTTSSHHHHHHHHHHCST--T--TTS-EEEEETTTS-HHHHHHHHHE
T ss_pred CEeCCHHHHHHHHHHHHHhC----CCCCEEEEcCCCCcHHHHHHHHHHhhh--c--ccCCeEEEehhhhhcchhhhhhhc
Confidence 47888888888888866543 224466999999999999999988321 1 11233444332 233322222211
Q ss_pred HhhCCCCCcccHHHHHHHHHHHhccCeEEEEEeCCCCCCccChhhhHHhhhcCC-----------CCceEEEEcCch
Q 038751 252 GLEGSLPNLRELNSLLEYIHTSIKEKKFFLILDDVWPDDYSKWEPFHNCLMNGL-----------CGSRILVTTRKE 317 (915)
Q Consensus 252 ~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iivTtR~~ 317 (915)
.-.+...+..... ...+... ..=-|+||++..-....-..+...+..+. ...|||.||...
T Consensus 73 ~~~~~~~~~~~~~--~G~l~~A---~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~~ 144 (168)
T PF00158_consen 73 HEKGAFTGARSDK--KGLLEQA---NGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSKD 144 (168)
T ss_dssp BCSSSSTTTSSEB--EHHHHHT---TTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS-
T ss_pred ccccccccccccc--CCceeec---cceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecCcC
Confidence 1111111111100 0122222 22367889986554444555666555321 246888888753
No 215
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.61 E-value=0.011 Score=64.69 Aligned_cols=145 Identities=17% Similarity=0.078 Sum_probs=83.2
Q ss_pred ccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhccccccc-------------------CCCeEE
Q 038751 172 DVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIE-------------------NFDKRI 232 (915)
Q Consensus 172 ~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~~ 232 (915)
.++|-+....++..+...... ....+.++|++|+||||+|..+.+..--.. ..+.+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~----~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~l 77 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGR----LPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFL 77 (325)
T ss_pred CcccchhHHHHHHHHHHhcCC----CCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceE
Confidence 356777778888888764321 234599999999999999988877421100 112233
Q ss_pred EEEeCCCCC---HHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHhccCeEEEEEeCCCCCCccChhhhHHhhhcCCCCce
Q 038751 233 WVCVSDPFD---EFRIAKAIIEGLEGSLPNLRELNSLLEYIHTSIKEKKFFLILDDVWPDDYSKWEPFHNCLMNGLCGSR 309 (915)
Q Consensus 233 wv~vs~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~ 309 (915)
.+.-+.... ..+..+++.+....... .++.-++++|++.......-+.+...+......+.
T Consensus 78 el~~s~~~~~~i~~~~vr~~~~~~~~~~~----------------~~~~kviiidead~mt~~A~nallk~lEep~~~~~ 141 (325)
T COG0470 78 ELNPSDLRKIDIIVEQVRELAEFLSESPL----------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTR 141 (325)
T ss_pred EecccccCCCcchHHHHHHHHHHhccCCC----------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeE
Confidence 333333322 12222222222211100 25677999999965555555667777777777888
Q ss_pred EEEEcCch-HHHhhh-cCcCeEeCCCCCH
Q 038751 310 ILVTTRKE-TVARMM-ESTDVISIKELSE 336 (915)
Q Consensus 310 iivTtR~~-~v~~~~-~~~~~~~l~~L~~ 336 (915)
+|++|... .+.... .....+++.+.+.
T Consensus 142 ~il~~n~~~~il~tI~SRc~~i~f~~~~~ 170 (325)
T COG0470 142 FILITNDPSKILPTIRSRCQRIRFKPPSR 170 (325)
T ss_pred EEEEcCChhhccchhhhcceeeecCCchH
Confidence 88888743 222222 2245677777333
No 216
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.61 E-value=0.0047 Score=66.48 Aligned_cols=102 Identities=18% Similarity=0.261 Sum_probs=55.6
Q ss_pred EEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHhccCe
Q 038751 199 QIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLRELNSLLEYIHTSIKEKK 278 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 278 (915)
.-+.++|..|+|||+||..+++.. ...-..++++++.. ++..+...-.. ...+.... + +.+. .-
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l--~~~g~~V~y~t~~~------l~~~l~~~~~~---~~~~~~~~---~-~~l~-~~ 247 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKEL--LDRGKSVIYRTADE------LIEILREIRFN---NDKELEEV---Y-DLLI-NC 247 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHH--HHCCCeEEEEEHHH------HHHHHHHHHhc---cchhHHHH---H-HHhc-cC
Confidence 569999999999999999998843 22223456665542 33333221111 11111111 2 2222 22
Q ss_pred EEEEEeCCCCCCccChhh--hHHhhhcC-CCCceEEEEcCc
Q 038751 279 FFLILDDVWPDDYSKWEP--FHNCLMNG-LCGSRILVTTRK 316 (915)
Q Consensus 279 ~LlVlDdvw~~~~~~~~~--l~~~l~~~-~~gs~iivTtR~ 316 (915)
=|||+||+.......|.. +...+... ..+-.+||||..
T Consensus 248 DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 248 DLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred CEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 389999996554444433 33333332 235568888874
No 217
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.61 E-value=0.0091 Score=58.61 Aligned_cols=36 Identities=28% Similarity=0.504 Sum_probs=28.0
Q ss_pred ceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEE
Q 038751 197 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWV 234 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 234 (915)
...+|.++|+.|+||||+|+.+++ .....+...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~--~l~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYE--RLKLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEEE
Confidence 456999999999999999999987 444455555555
No 218
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.61 E-value=0.0066 Score=62.36 Aligned_cols=46 Identities=22% Similarity=0.212 Sum_probs=34.4
Q ss_pred ceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHH
Q 038751 197 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRI 245 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~ 245 (915)
.-.++.|+|.+|+|||++|.+++.. ....-..++|++.. .++...+
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~--~~~~~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVE--AAKNGKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEECC-CCCHHHH
Confidence 4579999999999999999888763 22234668899887 5555443
No 219
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.59 E-value=0.017 Score=70.34 Aligned_cols=182 Identities=16% Similarity=0.143 Sum_probs=93.9
Q ss_pred cCccccchHHHHHHHHHHhccccc-------ccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCH
Q 038751 170 VSDVRGRDEEKNILKRKLLCESNE-------ERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDE 242 (915)
Q Consensus 170 ~~~~~Gr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 242 (915)
-.++.|.+..+++|.+++...-.. +-...+-|.++|++|+|||+||+.+++. ....| +.++..
T Consensus 177 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~--~~~~~-----i~i~~~--- 246 (733)
T TIGR01243 177 YEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANE--AGAYF-----ISINGP--- 246 (733)
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHH--hCCeE-----EEEecH---
Confidence 345889999999988876432110 1123456889999999999999999883 22222 222210
Q ss_pred HHHHHHHHHHhhCCCCCcccHHHHHHHHHHHhccCeEEEEEeCCCCCCc------c-----ChhhhHHhhhcC-CCCceE
Q 038751 243 FRIAKAIIEGLEGSLPNLRELNSLLEYIHTSIKEKKFFLILDDVWPDDY------S-----KWEPFHNCLMNG-LCGSRI 310 (915)
Q Consensus 243 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~------~-----~~~~l~~~l~~~-~~gs~i 310 (915)
++ .... .+ .....+...+.......+.+|++||+..... . ....+...+... ..+..+
T Consensus 247 -~i----~~~~----~g-~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vi 316 (733)
T TIGR01243 247 -EI----MSKY----YG-ESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVI 316 (733)
T ss_pred -HH----hccc----cc-HHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEE
Confidence 11 1100 11 1112233333344456678999999842100 0 112233333322 233344
Q ss_pred EE-EcCchH-HHhhh----cCcCeEeCCCCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCCCchH
Q 038751 311 LV-TTRKET-VARMM----ESTDVISIKELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKGLPLA 376 (915)
Q Consensus 311 iv-TtR~~~-v~~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~PLa 376 (915)
|+ ||.... +...+ .-...+.+...+.++-.+++....-... ...... ...+++.+.|.--+
T Consensus 317 vI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~-l~~d~~----l~~la~~t~G~~ga 383 (733)
T TIGR01243 317 VIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMP-LAEDVD----LDKLAEVTHGFVGA 383 (733)
T ss_pred EEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCC-CccccC----HHHHHHhCCCCCHH
Confidence 44 444332 11111 1134677888888888888875542211 111112 35577778876543
No 220
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.57 E-value=0.095 Score=57.23 Aligned_cols=168 Identities=14% Similarity=0.171 Sum_probs=94.5
Q ss_pred chHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccc--cCC---CeEEEEEeCCCCCHHHHHHHHH
Q 038751 176 RDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVI--ENF---DKRIWVCVSDPFDEFRIAKAII 250 (915)
Q Consensus 176 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~F---~~~~wv~vs~~~~~~~~~~~i~ 250 (915)
|+.-.+.+.+.+...+ .....+|+|.|.=|+||||+.+.+.+...-. ..+ ..-+|-......-...++..|.
T Consensus 1 ~~~~a~~la~~I~~~~---~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~~~~~~~~i~fn~w~~~~~~~~~~~~~~~l~ 77 (325)
T PF07693_consen 1 RKPYAKALAEIIKNPD---SDDPFVIGLYGEWGSGKSSFLNMLKEELKEDNKEKYIFIYFNAWEYDGEDDLWASFLEELF 77 (325)
T ss_pred ChHHHHHHHHHHhccC---CCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccceeeEEEccccCCCcchHHHHHHHHHH
Confidence 3445677777776542 2467899999999999999999988743222 111 1222433332333445555555
Q ss_pred HHhhCCCCC--------------------------c----------------------------------------ccHH
Q 038751 251 EGLEGSLPN--------------------------L----------------------------------------RELN 264 (915)
Q Consensus 251 ~~l~~~~~~--------------------------~----------------------------------------~~~~ 264 (915)
.++...... . .+.+
T Consensus 78 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (325)
T PF07693_consen 78 DQLEKHFGSKKIKLYAKKKLKSLKIKFKIKINLSKAIPLALIGLPALILAVAIAKLKAELKNAFKSLEEKFLKKLKKEVE 157 (325)
T ss_pred HHHHHhcCccchhHHHhhhhhhhhceeeeeeecceeehHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhHHHH
Confidence 555321000 0 0011
Q ss_pred HHHHHHHHHh--ccCeEEEEEeCCCCCCccChhhhHHhhhc--CCCCceEEEEcCchHHHhhhcC---------------
Q 038751 265 SLLEYIHTSI--KEKKFFLILDDVWPDDYSKWEPFHNCLMN--GLCGSRILVTTRKETVARMMES--------------- 325 (915)
Q Consensus 265 ~~~~~l~~~l--~~k~~LlVlDdvw~~~~~~~~~l~~~l~~--~~~gs~iivTtR~~~v~~~~~~--------------- 325 (915)
+....+.+.+ .++|.++|+||+..-+++....+...+.. ..++..+|+..-.+.++.....
T Consensus 158 ~~~~~~~~~l~~~~~~iViiIDdLDR~~~~~i~~~l~~ik~~~~~~~i~~Il~~D~~~l~~ai~~~~~~~~~~~~~~~yL 237 (325)
T PF07693_consen 158 ELISKIKKKLKESKKRIVIIIDDLDRCSPEEIVELLEAIKLLLDFPNIIFILAFDPEILEKAIEKNYGEGFDEIDGREYL 237 (325)
T ss_pred HHHHHHHHhhhcCCceEEEEEcchhcCCcHHHHHHHHHHHHhcCCCCeEEEEEecHHHHHHHHHhhcCcccccccHHHHH
Confidence 1223344444 35799999999976544433344333332 2367777777776655543211
Q ss_pred ----cCeEeCCCCCHHHHHHHHHHh
Q 038751 326 ----TDVISIKELSEQECWSLFKRF 346 (915)
Q Consensus 326 ----~~~~~l~~L~~~~~~~lf~~~ 346 (915)
..++.+++.+..+...+|...
T Consensus 238 eKiiq~~~~lP~~~~~~~~~~~~~~ 262 (325)
T PF07693_consen 238 EKIIQVPFSLPPPSPSDLERYLNEL 262 (325)
T ss_pred HhhcCeEEEeCCCCHHHHHHHHHHH
Confidence 236777888877766666554
No 221
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.57 E-value=0.0058 Score=63.96 Aligned_cols=135 Identities=27% Similarity=0.285 Sum_probs=74.4
Q ss_pred cccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcc-cccccCCCeEE----EEEeCCCC-------
Q 038751 173 VRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYND-KDVIENFDKRI----WVCVSDPF------- 240 (915)
Q Consensus 173 ~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~~~~F~~~~----wv~vs~~~------- 240 (915)
+-+|..+..-.+++|+.+ ....|.+.|.+|.|||.||-++.=. ...++.|...+ -+.++++.
T Consensus 226 i~prn~eQ~~ALdlLld~------dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~e 299 (436)
T COG1875 226 IRPRNAEQRVALDLLLDD------DIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTE 299 (436)
T ss_pred cCcccHHHHHHHHHhcCC------CCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCch
Confidence 445788888888888765 5789999999999999998543221 12234444322 23343321
Q ss_pred --CHHHHHHHHHHHhhCC-CCCcccHHHHHHHHH---------HHhccC---eEEEEEeCCCCCCccChhhhHHhhhcCC
Q 038751 241 --DEFRIAKAIIEGLEGS-LPNLRELNSLLEYIH---------TSIKEK---KFFLILDDVWPDDYSKWEPFHNCLMNGL 305 (915)
Q Consensus 241 --~~~~~~~~i~~~l~~~-~~~~~~~~~~~~~l~---------~~l~~k---~~LlVlDdvw~~~~~~~~~l~~~l~~~~ 305 (915)
.+.--.+.|..-+..- ..+......+...+. .+++++ +-++|+|.+.+-.+. +++..+...+
T Consensus 300 EeKm~PWmq~i~DnLE~L~~~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTph---eikTiltR~G 376 (436)
T COG1875 300 EEKMGPWMQAIFDNLEVLFSPNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTPH---ELKTILTRAG 376 (436)
T ss_pred hhhccchHHHHHhHHHHHhcccccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCHH---HHHHHHHhcc
Confidence 1122233333333210 011111122222211 123444 358999999764443 4555566778
Q ss_pred CCceEEEEcCc
Q 038751 306 CGSRILVTTRK 316 (915)
Q Consensus 306 ~gs~iivTtR~ 316 (915)
.||||+.|---
T Consensus 377 ~GsKIVl~gd~ 387 (436)
T COG1875 377 EGSKIVLTGDP 387 (436)
T ss_pred CCCEEEEcCCH
Confidence 99999988753
No 222
>PRK13695 putative NTPase; Provisional
Probab=96.55 E-value=0.0031 Score=61.81 Aligned_cols=34 Identities=26% Similarity=0.263 Sum_probs=24.0
Q ss_pred EEEEEecCCCcHHHHHHHHhcccccccCCCeEEEE
Q 038751 200 IISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWV 234 (915)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 234 (915)
.|+|+|.+|+|||||++.+++.... ..+....|+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~-~G~~~~g~~ 35 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKE-EGYKVGGFY 35 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEE
Confidence 3789999999999999998774322 234444454
No 223
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.54 E-value=0.023 Score=61.49 Aligned_cols=104 Identities=13% Similarity=0.131 Sum_probs=54.2
Q ss_pred ceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCC-CCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHhc
Q 038751 197 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDP-FDEFRIAKAIIEGLEGSLPNLRELNSLLEYIHTSIK 275 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 275 (915)
..++|+++|++|+||||++..++.... ...+ .+..++.... ....+-++...+.++.......+...+.+.+...-.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~-~~Gk-kVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~ 317 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFH-GKKK-TVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE 317 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHH-HcCC-cEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHh
Confidence 458999999999999999988876322 2222 3445544321 123333444444443332222345555555544322
Q ss_pred c-CeEEEEEeCCCCCC--ccChhhhHHhhh
Q 038751 276 E-KKFFLILDDVWPDD--YSKWEPFHNCLM 302 (915)
Q Consensus 276 ~-k~~LlVlDdvw~~~--~~~~~~l~~~l~ 302 (915)
. +.=+|++|-.-... ......+...+.
T Consensus 318 ~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk 347 (436)
T PRK11889 318 EARVDYILIDTAGKNYRASETVEEMIETMG 347 (436)
T ss_pred ccCCCEEEEeCccccCcCHHHHHHHHHHHh
Confidence 1 23477888774322 223444444443
No 224
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.53 E-value=0.04 Score=57.29 Aligned_cols=172 Identities=20% Similarity=0.210 Sum_probs=96.9
Q ss_pred CccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcc-cccccCCCeEEEEEeCCCCCH-HHHHHH
Q 038751 171 SDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYND-KDVIENFDKRIWVCVSDPFDE-FRIAKA 248 (915)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~~~~F~~~~wv~vs~~~~~-~~~~~~ 248 (915)
..++|-.++..++-.++....- -++..-|.|+|+.|.|||+|.-.+..+ .+..++| .-|........ +-.+++
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~--~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~---l~v~Lng~~~~dk~al~~ 98 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTIL--HGESNSVIIIGPRGSGKTILIDTRLSDIQENGENF---LLVRLNGELQTDKIALKG 98 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHH--hcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeE---EEEEECccchhhHHHHHH
Confidence 3588999999999988876543 224456789999999999999777665 1233333 34445444333 234566
Q ss_pred HHHHhhCC----CCCc----ccHHHHHHHHHHHh--ccCeEEEEEeCCCCCCccChhhhH-Hhhh---c-CCCCceEEEE
Q 038751 249 IIEGLEGS----LPNL----RELNSLLEYIHTSI--KEKKFFLILDDVWPDDYSKWEPFH-NCLM---N-GLCGSRILVT 313 (915)
Q Consensus 249 i~~~l~~~----~~~~----~~~~~~~~~l~~~l--~~k~~LlVlDdvw~~~~~~~~~l~-~~l~---~-~~~gs~iivT 313 (915)
|.+|+... .... +....+...+...- .+-++.+|+|...-.-+..-..+. ..|. . ..+-+-|-+|
T Consensus 99 I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~T 178 (408)
T KOG2228|consen 99 ITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVT 178 (408)
T ss_pred HHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEee
Confidence 66665432 1111 22333333333211 234578888876322111111222 2222 1 2345677789
Q ss_pred cCchHHH-------hhhcCcCeEeCCCCCHHHHHHHHHHhH
Q 038751 314 TRKETVA-------RMMESTDVISIKELSEQECWSLFKRFA 347 (915)
Q Consensus 314 tR~~~v~-------~~~~~~~~~~l~~L~~~~~~~lf~~~~ 347 (915)
||-.... +...-..++-+++++-++...++++..
T Consensus 179 trld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 179 TRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred ccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 9964322 222223356677888999999998876
No 225
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.53 E-value=0.061 Score=56.57 Aligned_cols=178 Identities=16% Similarity=0.160 Sum_probs=99.1
Q ss_pred CccccchHHHHHHHHHHhccccc-------ccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHH
Q 038751 171 SDVRGRDEEKNILKRKLLCESNE-------ERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEF 243 (915)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 243 (915)
.++=|-++++++|.+...-+-.. +=..++=|.+||++|.|||-||++|++. ....| +.|..
T Consensus 151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~--T~AtF-----Irvvg----- 218 (406)
T COG1222 151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQ--TDATF-----IRVVG----- 218 (406)
T ss_pred hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhc--cCceE-----EEecc-----
Confidence 45778898888888876432110 1234677889999999999999999994 33333 33332
Q ss_pred HHHHHHHHHhhCCCCCcccHHHHHHHHHHHhc-cCeEEEEEeCCCC-----------CCccChhhhHHhhh---cC--CC
Q 038751 244 RIAKAIIEGLEGSLPNLRELNSLLEYIHTSIK-EKKFFLILDDVWP-----------DDYSKWEPFHNCLM---NG--LC 306 (915)
Q Consensus 244 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdvw~-----------~~~~~~~~l~~~l~---~~--~~ 306 (915)
.++++..-+ +...++..+.+.-+ ..+..|++|.+.. .+.+.-..+...|. .. ..
T Consensus 219 ---SElVqKYiG------EGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~ 289 (406)
T COG1222 219 ---SELVQKYIG------EGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRG 289 (406)
T ss_pred ---HHHHHHHhc------cchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCC
Confidence 122222222 12334445555444 4588999998842 11122223333332 22 24
Q ss_pred CceEEEEcCchHHHhh-----hcCcCeEeCCCCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCCCc
Q 038751 307 GSRILVTTRKETVARM-----MESTDVISIKELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKGLP 374 (915)
Q Consensus 307 gs~iivTtR~~~v~~~-----~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~P 374 (915)
.-|||..|...++... ..-...+++..-+.+.-.++|+-++-.-. ....-+++. +++.|.|.-
T Consensus 290 nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~-l~~dvd~e~----la~~~~g~s 357 (406)
T COG1222 290 NVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMN-LADDVDLEL----LARLTEGFS 357 (406)
T ss_pred CeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhcc-CccCcCHHH----HHHhcCCCc
Confidence 5589988876554332 22256778875555555667766553221 122234444 555566654
No 226
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.52 E-value=0.0027 Score=45.67 Aligned_cols=37 Identities=24% Similarity=0.268 Sum_probs=25.5
Q ss_pred CceeEEEeccCCCCceeccccchhccccCCcceeeecCCCCCc
Q 038751 556 KTLHSLILVYSSNNQVAASPVLQGLFDQLTCLRALKIEDLPPT 598 (915)
Q Consensus 556 ~~Lr~L~l~~~~~~lrv~~~~lp~~i~~L~~Lr~L~l~~~~~~ 598 (915)
++|++|.+.++ .+..+|..|++|++|++|++++|+.+
T Consensus 1 ~~L~~L~l~~N------~i~~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNN------QITDLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSS------S-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCC------CCcccCchHhCCCCCCEEEecCCCCC
Confidence 35777777777 56677777777888888887777665
No 227
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.52 E-value=0.039 Score=59.56 Aligned_cols=71 Identities=7% Similarity=0.040 Sum_probs=48.2
Q ss_pred cCeEEEEEeCCCCCCccChhhhHHhhhcCCCCceEEEEcCchH-HHhhh-cCcCeEeCCCCCHHHHHHHHHHh
Q 038751 276 EKKFFLILDDVWPDDYSKWEPFHNCLMNGLCGSRILVTTRKET-VARMM-ESTDVISIKELSEQECWSLFKRF 346 (915)
Q Consensus 276 ~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~-v~~~~-~~~~~~~l~~L~~~~~~~lf~~~ 346 (915)
+++-++|+|++..-+...-+.+...+.....+..+|++|.+.. +...+ .....+.+.+++.++..+.+...
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc
Confidence 3444556688866666666677777776555676777777653 33332 23568899999999998888664
No 228
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.51 E-value=0.016 Score=60.36 Aligned_cols=89 Identities=25% Similarity=0.294 Sum_probs=53.7
Q ss_pred ceEEEEEEecCCCcHHHHHHHHhccccccc----CCCeEEEEEeCCCCCHHHHHHHHHHHhhCCC------------CCc
Q 038751 197 AVQIISLVGMGGIGKTTLAQFAYNDKDVIE----NFDKRIWVCVSDPFDEFRIAKAIIEGLEGSL------------PNL 260 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~------------~~~ 260 (915)
.-.+.-|+|.+|+|||.|+..++-...... .=..++|++....|...++. +|++....+. .+.
T Consensus 37 ~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~~ 115 (256)
T PF08423_consen 37 TGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFDL 115 (256)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SSH
T ss_pred CCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCCH
Confidence 346899999999999999977654333222 12368999999999887775 4666543221 111
Q ss_pred ccHHHHHHHHHHHh-ccCeEEEEEeCC
Q 038751 261 RELNSLLEYIHTSI-KEKKFFLILDDV 286 (915)
Q Consensus 261 ~~~~~~~~~l~~~l-~~k~~LlVlDdv 286 (915)
.+...+...+...+ .++--|||+|.+
T Consensus 116 ~~l~~~L~~l~~~l~~~~ikLIVIDSI 142 (256)
T PF08423_consen 116 EELLELLEQLPKLLSESKIKLIVIDSI 142 (256)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETS
T ss_pred HHHHHHHHHHHhhccccceEEEEecch
Confidence 22222333333333 344558888887
No 229
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.48 E-value=0.015 Score=60.26 Aligned_cols=89 Identities=21% Similarity=0.200 Sum_probs=53.4
Q ss_pred ceEEEEEEecCCCcHHHHHHHHhcccccccC----CCeEEEEEeCCCCCHHHHHHHHHHHhhCCC------------CCc
Q 038751 197 AVQIISLVGMGGIGKTTLAQFAYNDKDVIEN----FDKRIWVCVSDPFDEFRIAKAIIEGLEGSL------------PNL 260 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~------------~~~ 260 (915)
.-.++.|+|.+|+|||+||.+++........ -..++|++....++..++. ++++...... .+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~~~ 96 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLV-QIAERFGLDPEEVLDNIYVARAYNS 96 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHH-HHHHHhccChHhHhcCEEEEecCCH
Confidence 4589999999999999999888643222221 3578999988877765443 3334332211 111
Q ss_pred ccHHHHHHHHHHHhc-c-CeEEEEEeCC
Q 038751 261 RELNSLLEYIHTSIK-E-KKFFLILDDV 286 (915)
Q Consensus 261 ~~~~~~~~~l~~~l~-~-k~~LlVlDdv 286 (915)
.+...+...+...+. . +.-+||+|-+
T Consensus 97 ~~l~~~l~~l~~~l~~~~~~~liVIDSi 124 (235)
T cd01123 97 DHQLQLLEELEAILIESSRIKLVIVDSV 124 (235)
T ss_pred HHHHHHHHHHHHHHhhcCCeeEEEEeCc
Confidence 122233344444442 3 5668888887
No 230
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.47 E-value=0.067 Score=58.82 Aligned_cols=149 Identities=18% Similarity=0.256 Sum_probs=88.2
Q ss_pred cCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHh
Q 038751 195 RNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLRELNSLLEYIHTSI 274 (915)
Q Consensus 195 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 274 (915)
......+.+.|++|+|||+||..++.+ ..|+.+--++-... ++ ..+......+...+....
T Consensus 535 ~s~lvSvLl~Gp~~sGKTaLAA~iA~~----S~FPFvKiiSpe~m-------------iG--~sEsaKc~~i~k~F~DAY 595 (744)
T KOG0741|consen 535 RSPLVSVLLEGPPGSGKTALAAKIALS----SDFPFVKIISPEDM-------------IG--LSESAKCAHIKKIFEDAY 595 (744)
T ss_pred cCcceEEEEecCCCCChHHHHHHHHhh----cCCCeEEEeChHHc-------------cC--ccHHHHHHHHHHHHHHhh
Confidence 446777889999999999999988763 56775433322111 11 011112223344455555
Q ss_pred ccCeEEEEEeCCCCCCccChh------------hhHHhhhcC-CCCceE--EEEcCchHHHhhhcC----cCeEeCCCCC
Q 038751 275 KEKKFFLILDDVWPDDYSKWE------------PFHNCLMNG-LCGSRI--LVTTRKETVARMMES----TDVISIKELS 335 (915)
Q Consensus 275 ~~k~~LlVlDdvw~~~~~~~~------------~l~~~l~~~-~~gs~i--ivTtR~~~v~~~~~~----~~~~~l~~L~ 335 (915)
+..--.||+||+. ..-+|- .+...+... .+|-|. +-||....+.+.|+- ...+.++.++
T Consensus 596 kS~lsiivvDdiE--rLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~ 673 (744)
T KOG0741|consen 596 KSPLSIIVVDDIE--RLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLT 673 (744)
T ss_pred cCcceEEEEcchh--hhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccC
Confidence 6777899999982 222332 233333332 344443 446666777777654 4588999998
Q ss_pred H-HHHHHHHHHhH-cCCCCCCchhHHHHHHHHHHHhc
Q 038751 336 E-QECWSLFKRFA-FSGRSPTECEQLEEIGRKIVGKC 370 (915)
Q Consensus 336 ~-~~~~~lf~~~~-~~~~~~~~~~~l~~~~~~i~~~c 370 (915)
. ++..+.++..- |. +.....++++...+|
T Consensus 674 ~~~~~~~vl~~~n~fs------d~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 674 TGEQLLEVLEELNIFS------DDEVRAIAEQLLSKK 704 (744)
T ss_pred chHHHHHHHHHccCCC------cchhHHHHHHHhccc
Confidence 7 77777776643 22 234556666766666
No 231
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.47 E-value=0.0014 Score=61.52 Aligned_cols=89 Identities=24% Similarity=0.215 Sum_probs=49.2
Q ss_pred EEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHhccCeEE
Q 038751 201 ISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLRELNSLLEYIHTSIKEKKFF 280 (915)
Q Consensus 201 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~L 280 (915)
|.++|++|+|||+||+.+++- .. ....-+.++...+..++....--. ... ....+ ..+...+ .+..+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~--~~---~~~~~i~~~~~~~~~dl~g~~~~~-~~~-~~~~~-~~l~~a~-----~~~~i 68 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAAL--LG---RPVIRINCSSDTTEEDLIGSYDPS-NGQ-FEFKD-GPLVRAM-----RKGGI 68 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHH--HT---CEEEEEE-TTTSTHHHHHCEEET--TTT-TCEEE--CCCTTH-----HEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHH--hh---cceEEEEeccccccccceeeeeec-ccc-ccccc-ccccccc-----cceeE
Confidence 679999999999999999873 21 123346777777777665433211 000 00000 0000001 17889
Q ss_pred EEEeCCCCCCccChhhhHHhhh
Q 038751 281 LILDDVWPDDYSKWEPFHNCLM 302 (915)
Q Consensus 281 lVlDdvw~~~~~~~~~l~~~l~ 302 (915)
+|||++...+.+.+..+...+.
T Consensus 69 l~lDEin~a~~~v~~~L~~ll~ 90 (139)
T PF07728_consen 69 LVLDEINRAPPEVLESLLSLLE 90 (139)
T ss_dssp EEESSCGG--HHHHHTTHHHHS
T ss_pred EEECCcccCCHHHHHHHHHHHh
Confidence 9999996545555555555444
No 232
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.46 E-value=0.0043 Score=59.53 Aligned_cols=126 Identities=20% Similarity=0.269 Sum_probs=82.7
Q ss_pred ceEEEeeeCCCCCCCccc-CccCccEEEEcCcCCCCCCCCCCCCCCcceeeccccccceEeCccccCCcccccccccccC
Q 038751 733 KSLEIMVFKGRTPSNWIG-SLNKLKMLTLNSFVKCEIMPPLGKLPSLEILRIWHMRSVKRVGDEFLGMEISDHIHIHGTS 811 (915)
Q Consensus 733 ~~L~l~~~~~~~~p~~~~-~l~~L~~L~L~~~~~~~~l~~l~~Lp~L~~L~L~~~~~l~~~~~~~~~~~~l~~l~l~~~~ 811 (915)
+.+++.++.+...-. ++ .+.+...++|++|. +..++.+..++.|..|.+.++. +..+...+.
T Consensus 22 ~e~~LR~lkip~ien-lg~~~d~~d~iDLtdNd-l~~l~~lp~l~rL~tLll~nNr-It~I~p~L~-------------- 84 (233)
T KOG1644|consen 22 RELDLRGLKIPVIEN-LGATLDQFDAIDLTDND-LRKLDNLPHLPRLHTLLLNNNR-ITRIDPDLD-------------- 84 (233)
T ss_pred cccccccccccchhh-ccccccccceecccccc-hhhcccCCCccccceEEecCCc-ceeeccchh--------------
Confidence 445566655433222 22 35577788898874 4455667788999999997765 777766543
Q ss_pred CCcccccCcccceeeecCcccccccccCCCCcccCcccceeecccCccccCCC----cCCCCCCCcCeEeEcCCcc
Q 038751 812 SSSSVIAFPKLQKLELTGMDELEEWDFGNDDITIMPHIKSLYITYCEKLKSLP----ELLLRSTTLESLTIFGVPI 883 (915)
Q Consensus 812 ~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~lp~L~~L~l~~c~~L~~lp----~~l~~l~~L~~L~l~~c~~ 883 (915)
..+|+|+.|.+.+.+ +..+.-... +..+|+|++|.+.++|- ..-+ -.+..+|+|+.||+.+-..
T Consensus 85 -----~~~p~l~~L~LtnNs-i~~l~dl~p-La~~p~L~~Ltll~Npv-~~k~~YR~yvl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 85 -----TFLPNLKTLILTNNS-IQELGDLDP-LASCPKLEYLTLLGNPV-EHKKNYRLYVLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred -----hhccccceEEecCcc-hhhhhhcch-hccCCccceeeecCCch-hcccCceeEEEEecCcceEeehhhhhH
Confidence 368889999998853 333331111 55889999999988863 3332 2356788999999987643
No 233
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.38 E-value=0.0025 Score=58.17 Aligned_cols=22 Identities=36% Similarity=0.448 Sum_probs=20.2
Q ss_pred EEEEEecCCCcHHHHHHHHhcc
Q 038751 200 IISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
||.|+|++|+||||+|+.+.+.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999873
No 234
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.37 E-value=0.0038 Score=58.47 Aligned_cols=108 Identities=16% Similarity=0.132 Sum_probs=62.4
Q ss_pred ccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhccccc-ccCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 038751 174 RGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDV-IENFDKRIWVCVSDPFDEFRIAKAIIEG 252 (915)
Q Consensus 174 ~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 252 (915)
||+-...+++.+.+..-.. ...-|.|+|..|+||+++|+.++..... ...|... .... .+
T Consensus 1 vG~S~~~~~l~~~l~~~a~----~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~---~~~~-~~----------- 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAK----SSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVI---DCAS-LP----------- 61 (138)
T ss_dssp --SCHHHHHHHHHHHHHHC----SSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCC---CHHC-TC-----------
T ss_pred CCCCHHHHHHHHHHHHHhC----CCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEe---chhh-Cc-----------
Confidence 4666777777777765432 3345789999999999999988874321 1122211 0010 00
Q ss_pred hhCCCCCcccHHHHHHHHHHHhccCeEEEEEeCCCCCCccChhhhHHhhhcC-CCCceEEEEcCch
Q 038751 253 LEGSLPNLRELNSLLEYIHTSIKEKKFFLILDDVWPDDYSKWEPFHNCLMNG-LCGSRILVTTRKE 317 (915)
Q Consensus 253 l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~-~~gs~iivTtR~~ 317 (915)
.+.+.+ .+.--|+++|+..-+.+....+...+... ....|+|.||+.+
T Consensus 62 --------------~~~l~~---a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 62 --------------AELLEQ---AKGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQD 110 (138)
T ss_dssp --------------HHHHHH---CTTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-
T ss_pred --------------HHHHHH---cCCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence 111111 14446789998655555556666666643 5678999999854
No 235
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.37 E-value=0.022 Score=54.33 Aligned_cols=123 Identities=22% Similarity=0.216 Sum_probs=71.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEe---------------------CC------------------
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCV---------------------SD------------------ 238 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v---------------------s~------------------ 238 (915)
-..+.|+|++|.|||||.+.+|...+.. ...+|+.- =|
T Consensus 28 Gef~fl~GpSGAGKSTllkLi~~~e~pt---~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL 104 (223)
T COG2884 28 GEFVFLTGPSGAGKSTLLKLIYGEERPT---RGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPL 104 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhhcCC---CceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhhh
Confidence 4689999999999999999999854321 22333320 00
Q ss_pred ---CCCHHHHHHHHHHHh---hCC-----CC-CcccHHHHHHHHHHHhccCeEEEEEeCCC-CCC-ccChhhhHHhhhcC
Q 038751 239 ---PFDEFRIAKAIIEGL---EGS-----LP-NLRELNSLLEYIHTSIKEKKFFLILDDVW-PDD-YSKWEPFHNCLMNG 304 (915)
Q Consensus 239 ---~~~~~~~~~~i~~~l---~~~-----~~-~~~~~~~~~~~l~~~l~~k~~LlVlDdvw-~~~-~~~~~~l~~~l~~~ 304 (915)
.....++-+...+.+ +.. .+ ..+..++-.-.+.+.+-+++-+++-|.-- +-| ...|+-+.-.-.-+
T Consensus 105 ~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeein 184 (223)
T COG2884 105 RVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEIN 184 (223)
T ss_pred hccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHh
Confidence 111222322222222 211 11 22333444556778888899999999641 112 23455444333346
Q ss_pred CCCceEEEEcCchHHHhhh
Q 038751 305 LCGSRILVTTRKETVARMM 323 (915)
Q Consensus 305 ~~gs~iivTtR~~~v~~~~ 323 (915)
..|+.||++|-+...-..+
T Consensus 185 r~GtTVl~ATHd~~lv~~~ 203 (223)
T COG2884 185 RLGTTVLMATHDLELVNRM 203 (223)
T ss_pred hcCcEEEEEeccHHHHHhc
Confidence 7899999999998876655
No 236
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.36 E-value=0.037 Score=55.20 Aligned_cols=158 Identities=17% Similarity=0.160 Sum_probs=87.5
Q ss_pred cCccccchHHHH---HHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHH
Q 038751 170 VSDVRGRDEEKN---ILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIA 246 (915)
Q Consensus 170 ~~~~~Gr~~~~~---~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~ 246 (915)
-++++|.++.+. -|++.|..++.-++=.++-|..+|++|.|||.+|+++.+... -.| +.+. ..
T Consensus 120 ~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~k--vp~-----l~vk-------at 185 (368)
T COG1223 120 LDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAK--VPL-----LLVK-------AT 185 (368)
T ss_pred HhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccC--Cce-----EEec-------hH
Confidence 356899876653 456667655433344578899999999999999999999532 222 1111 11
Q ss_pred HHHHHHhhCCCCCcccHHHHHHHH-HHHhccCeEEEEEeCCCCC--------CccChhhhHHhh----hc--CCCCceEE
Q 038751 247 KAIIEGLEGSLPNLRELNSLLEYI-HTSIKEKKFFLILDDVWPD--------DYSKWEPFHNCL----MN--GLCGSRIL 311 (915)
Q Consensus 247 ~~i~~~l~~~~~~~~~~~~~~~~l-~~~l~~k~~LlVlDdvw~~--------~~~~~~~l~~~l----~~--~~~gs~ii 311 (915)
+-|-+..+ +....++.+ .+.-+..++++.+|.+..- -..+...+..+| .. .+.|...|
T Consensus 186 ~liGehVG-------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtI 258 (368)
T COG1223 186 ELIGEHVG-------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTI 258 (368)
T ss_pred HHHHHHhh-------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEE
Confidence 11111111 112222222 2333567899999987310 011122222222 21 23465566
Q ss_pred EEcCchHHHhhh-c--CcCeEeCCCCCHHHHHHHHHHhHc
Q 038751 312 VTTRKETVARMM-E--STDVISIKELSEQECWSLFKRFAF 348 (915)
Q Consensus 312 vTtR~~~v~~~~-~--~~~~~~l~~L~~~~~~~lf~~~~~ 348 (915)
-.|.+++..... . -..-++..--+++|-.+++...+-
T Consensus 259 aaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k 298 (368)
T COG1223 259 AATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAK 298 (368)
T ss_pred eecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHH
Confidence 666665544321 1 134677777788888888887763
No 237
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.34 E-value=0.031 Score=60.87 Aligned_cols=203 Identities=13% Similarity=0.146 Sum_probs=117.9
Q ss_pred chHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHH-HHHhcccccccCCCeEEEEEeCC---CCCHHHHHHHHHH
Q 038751 176 RDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLA-QFAYNDKDVIENFDKRIWVCVSD---PFDEFRIAKAIIE 251 (915)
Q Consensus 176 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~~~wv~vs~---~~~~~~~~~~i~~ 251 (915)
|.+..++|..||....+ ..|.|.|+-|+||+.|+ .++.++.. .+..+.+.+ ..+...+...++.
T Consensus 1 R~e~~~~L~~wL~e~~~------TFIvV~GPrGSGK~elV~d~~L~~r~------~vL~IDC~~i~~ar~D~~~I~~lA~ 68 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPN------TFIVVQGPRGSGKRELVMDHVLKDRK------NVLVIDCDQIVKARGDAAFIKNLAS 68 (431)
T ss_pred CchHHHHHHHHHhcCCC------eEEEEECCCCCCccHHHHHHHHhCCC------CEEEEEChHhhhccChHHHHHHHHH
Confidence 56778999999976543 79999999999999999 77776422 134444322 1233344444444
Q ss_pred Hhh-----------------------CCCCCc-ccH-HHHHH-------HHHH-------------------Hhc---cC
Q 038751 252 GLE-----------------------GSLPNL-REL-NSLLE-------YIHT-------------------SIK---EK 277 (915)
Q Consensus 252 ~l~-----------------------~~~~~~-~~~-~~~~~-------~l~~-------------------~l~---~k 277 (915)
+++ +...+. ... .++.+ .|++ ++. .+
T Consensus 69 qvGY~PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~ 148 (431)
T PF10443_consen 69 QVGYFPVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPER 148 (431)
T ss_pred hcCCCcchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCcc
Confidence 442 211111 111 11111 1221 111 23
Q ss_pred eEEEEEeCCCCCC---ccChhhhHH---hhhcCCCCceEEEEcCchHHHh----hhc--CcCeEeCCCCCHHHHHHHHHH
Q 038751 278 KFFLILDDVWPDD---YSKWEPFHN---CLMNGLCGSRILVTTRKETVAR----MME--STDVISIKELSEQECWSLFKR 345 (915)
Q Consensus 278 ~~LlVlDdvw~~~---~~~~~~l~~---~l~~~~~gs~iivTtR~~~v~~----~~~--~~~~~~l~~L~~~~~~~lf~~ 345 (915)
+-+||+|+.-... .-.|+.+.. .+- ..+=.+||++|-+..... .+. ..+.+.|...+.+.|..+...
T Consensus 149 ~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv-~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~ 227 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEENDFIYDKLAEWAASLV-QNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLS 227 (431)
T ss_pred CCEEEEcchhccCcccchHHHHHHHHHHHHH-hcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHH
Confidence 5689999984321 112222221 111 234458888888765444 332 246889999999999999998
Q ss_pred hHcCCCCC------------Cch----hHHHHHHHHHHHhcCCCchHHHHHHhHhhcCCCHH
Q 038751 346 FAFSGRSP------------TEC----EQLEEIGRKIVGKCKGLPLAAKTIGSLLRFKKTRE 391 (915)
Q Consensus 346 ~~~~~~~~------------~~~----~~l~~~~~~i~~~c~G~PLai~~~~~~l~~~~~~~ 391 (915)
+....... ... .....-....+...||--.=+..+++.++...+++
T Consensus 228 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~ 289 (431)
T PF10443_consen 228 QLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPE 289 (431)
T ss_pred HhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHH
Confidence 87543110 000 11223345677889999999999999998766554
No 238
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.33 E-value=0.021 Score=58.71 Aligned_cols=87 Identities=16% Similarity=0.145 Sum_probs=52.6
Q ss_pred ceEEEEEEecCCCcHHHHHHHHhcccccccCC------CeEEEEEeCCCCCHHHHHHHHHHHhhCCC---------CCcc
Q 038751 197 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENF------DKRIWVCVSDPFDEFRIAKAIIEGLEGSL---------PNLR 261 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F------~~~~wv~vs~~~~~~~~~~~i~~~l~~~~---------~~~~ 261 (915)
.-.++.|+|.+|+|||+||..++.... ..- ..++|+.....++...+. .+.+...... ....
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~--~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~ 94 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQ--LPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARPY 94 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhh--cccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeCC
Confidence 457999999999999999988765321 122 457899988777765543 3333322110 0112
Q ss_pred cHHHHHHHHHHHhc----cCeEEEEEeCC
Q 038751 262 ELNSLLEYIHTSIK----EKKFFLILDDV 286 (915)
Q Consensus 262 ~~~~~~~~l~~~l~----~k~~LlVlDdv 286 (915)
+.+++...+.+... .+.-++|+|.+
T Consensus 95 ~~~~~~~~l~~~~~~~~~~~~~lvVIDsi 123 (226)
T cd01393 95 NGEQQLEIVEELERIMSSGRVDLVVVDSV 123 (226)
T ss_pred CHHHHHHHHHHHHHHhhcCCeeEEEEcCc
Confidence 34444444444432 34458888987
No 239
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.31 E-value=0.026 Score=55.48 Aligned_cols=117 Identities=16% Similarity=0.065 Sum_probs=60.7
Q ss_pred EEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhhC--C-------------CCCcccH
Q 038751 199 QIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEG--S-------------LPNLREL 263 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~--~-------------~~~~~~~ 263 (915)
.+++|+|..|.|||||++.+..-.. .-...+++.-. +.......+.+.++- + .......
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~---~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G 102 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGDLK---PQQGEITLDGV---PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGG 102 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCC---CCCCEEEECCE---EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCHH
Confidence 5799999999999999999987421 11223332111 111110111111110 0 0011112
Q ss_pred HHHHHHHHHHhccCeEEEEEeCCCC-CCccChhhhHHhhhcCCCCceEEEEcCchHHHh
Q 038751 264 NSLLEYIHTSIKEKKFFLILDDVWP-DDYSKWEPFHNCLMNGLCGSRILVTTRKETVAR 321 (915)
Q Consensus 264 ~~~~~~l~~~l~~k~~LlVlDdvw~-~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~ 321 (915)
+...-.+.+.+-.++-++++|+... -|....+.+...+.....+..||++|.+.....
T Consensus 103 ~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 161 (178)
T cd03247 103 ERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE 161 (178)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 2223345566667888999998743 122233344444443334677888888776554
No 240
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.30 E-value=0.024 Score=53.70 Aligned_cols=117 Identities=15% Similarity=0.109 Sum_probs=63.0
Q ss_pred EEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEe---CCCCCHHHHHHHHHHHh-----hCCC----CC-ccc---
Q 038751 199 QIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCV---SDPFDEFRIAKAIIEGL-----EGSL----PN-LRE--- 262 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v---s~~~~~~~~~~~i~~~l-----~~~~----~~-~~~--- 262 (915)
..|-|++..|.||||+|-...-. .....+ .+.+|-+ ........+++.+- .+ +... .+ ..+
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~r-a~~~g~-~v~~vQFlKg~~~~gE~~~l~~l~-~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALR-ALGHGY-RVGVVQFLKGGWKYGELKALERLP-NIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH-HHHCCC-eEEEEEEeCCCCccCHHHHHHhCC-CcEEEECCCCCccCCCChHHHHHH
Confidence 57889999999999999554432 112222 2333333 22334444444430 01 0000 00 011
Q ss_pred HHHHHHHHHHHhcc-CeEEEEEeCCCC---CCccChhhhHHhhhcCCCCceEEEEcCchH
Q 038751 263 LNSLLEYIHTSIKE-KKFFLILDDVWP---DDYSKWEPFHNCLMNGLCGSRILVTTRKET 318 (915)
Q Consensus 263 ~~~~~~~l~~~l~~-k~~LlVlDdvw~---~~~~~~~~l~~~l~~~~~gs~iivTtR~~~ 318 (915)
.....+..++.+.. .-=|+|||++-. -..-..+.+...+.....+..+|+|.|+..
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 11222333344443 445999999832 223355677777777777889999999853
No 241
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.29 E-value=0.018 Score=57.95 Aligned_cols=207 Identities=12% Similarity=0.154 Sum_probs=111.9
Q ss_pred cccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHH----hcccccccCCCeEEEEEeCCC---------
Q 038751 173 VRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFA----YNDKDVIENFDKRIWVCVSDP--------- 239 (915)
Q Consensus 173 ~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v----~~~~~~~~~F~~~~wv~vs~~--------- 239 (915)
+.++++....+...... +...-..++|++|.||-|.+..+ |.--..+-.-+.+.|.+-|..
T Consensus 15 l~~~~e~~~~Lksl~~~------~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS 88 (351)
T KOG2035|consen 15 LIYHEELANLLKSLSST------GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSS 88 (351)
T ss_pred cccHHHHHHHHHHhccc------CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecc
Confidence 56666666666665532 24677889999999999877544 442111223345556544332
Q ss_pred -C-----------CHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHhccCeE-EEEEeCCCCCCccChhhhHHhhhcCCC
Q 038751 240 -F-----------DEFRIAKAIIEGLEGSLPNLRELNSLLEYIHTSIKEKKF-FLILDDVWPDDYSKWEPFHNCLMNGLC 306 (915)
Q Consensus 240 -~-----------~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~-LlVlDdvw~~~~~~~~~l~~~l~~~~~ 306 (915)
+ ...-+.++|+.+.....+- +.-..+.| ++|+-.+..-..+.-..++.....-..
T Consensus 89 ~yHlEitPSDaG~~DRvViQellKevAQt~qi------------e~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~ 156 (351)
T KOG2035|consen 89 NYHLEITPSDAGNYDRVVIQELLKEVAQTQQI------------ETQGQRPFKVVVINEADELTRDAQHALRRTMEKYSS 156 (351)
T ss_pred cceEEeChhhcCcccHHHHHHHHHHHHhhcch------------hhccccceEEEEEechHhhhHHHHHHHHHHHHHHhc
Confidence 1 1122233333332211000 00012344 555655543333445566666666566
Q ss_pred CceEEEEcCch--HHHhhhcCcCeEeCCCCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCCCchHHHHHHhHh
Q 038751 307 GSRILVTTRKE--TVARMMESTDVISIKELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKGLPLAAKTIGSLL 384 (915)
Q Consensus 307 gs~iivTtR~~--~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~PLai~~~~~~l 384 (915)
.+|+|+...+- -+...-...-.+++...+++|....+++.+-..+- .. | ++++++|+++++|.-.-+..+--.+
T Consensus 157 ~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l-~l-p--~~~l~rIa~kS~~nLRrAllmlE~~ 232 (351)
T KOG2035|consen 157 NCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGL-QL-P--KELLKRIAEKSNRNLRRALLMLEAV 232 (351)
T ss_pred CceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcc-cC-c--HHHHHHHHHHhcccHHHHHHHHHHH
Confidence 77887744321 11111122457899999999999999887644332 11 2 6788999999988654333333333
Q ss_pred hcCC----------CHHHHHHHHhhhc
Q 038751 385 RFKK----------TREEWHIILNSEM 401 (915)
Q Consensus 385 ~~~~----------~~~~w~~~~~~~~ 401 (915)
+-+. ..-+|.-.+.+..
T Consensus 233 ~~~n~~~~a~~~~i~~~dWe~~i~e~a 259 (351)
T KOG2035|consen 233 RVNNEPFTANSQVIPKPDWEIYIQEIA 259 (351)
T ss_pred HhccccccccCCCCCCccHHHHHHHHH
Confidence 2211 2357887765443
No 242
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.27 E-value=0.014 Score=59.67 Aligned_cols=43 Identities=16% Similarity=0.104 Sum_probs=31.5
Q ss_pred ceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCC
Q 038751 197 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFD 241 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 241 (915)
.-.++.|+|.+|+||||+|.+++.. ....-..++|++....+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~--~~~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVE--TAGQGKKVAYIDTEGLSS 60 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCCCCH
Confidence 4589999999999999999888763 222234577887765554
No 243
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.25 E-value=0.02 Score=68.22 Aligned_cols=122 Identities=17% Similarity=0.234 Sum_probs=75.1
Q ss_pred ccccchHHHHHHHHHHhcccccccC--ceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHH
Q 038751 172 DVRGRDEEKNILKRKLLCESNEERN--AVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAI 249 (915)
Q Consensus 172 ~~~Gr~~~~~~l~~~L~~~~~~~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 249 (915)
.++|-++.+..|.+.+.....+-.. ..-.+.+.|+.|+|||-||+.+.. .+-+..+..+-++.+. ...
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~--~~Fgse~~~IriDmse------~~e-- 632 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAE--YVFGSEENFIRLDMSE------FQE-- 632 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHH--HHcCCccceEEechhh------hhh--
Confidence 4788888888888888765432122 567888999999999999998876 3333334444444443 222
Q ss_pred HHHhhCCCCCcccHHHHHHHHHHHhccCeE-EEEEeCCCCCCccChhhhHHhhhcC
Q 038751 250 IEGLEGSLPNLRELNSLLEYIHTSIKEKKF-FLILDDVWPDDYSKWEPFHNCLMNG 304 (915)
Q Consensus 250 ~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~-LlVlDdvw~~~~~~~~~l~~~l~~~ 304 (915)
...+.+..++... .+-...|.+.++.++| +|+||||...++.....+...+..+
T Consensus 633 vskligsp~gyvG-~e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD~G 687 (898)
T KOG1051|consen 633 VSKLIGSPPGYVG-KEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLDRG 687 (898)
T ss_pred hhhccCCCccccc-chhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHhcC
Confidence 3334333332221 1223466677777877 5557999766665666566666654
No 244
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.25 E-value=0.044 Score=53.97 Aligned_cols=119 Identities=16% Similarity=0.143 Sum_probs=65.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEE---eCCCCCHHHHHH------HHHHHhhCC-----C-CCccc
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVC---VSDPFDEFRIAK------AIIEGLEGS-----L-PNLRE 262 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~---vs~~~~~~~~~~------~i~~~l~~~-----~-~~~~~ 262 (915)
-.+++|+|..|.|||||++.++... ......+++. +. ..+...... ++++.++.. . ...+.
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~---~~~~G~v~~~g~~~~-~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~ 100 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLL---KPSSGEILLDGKDLA-SLSPKELARKIAYVPQALELLGLAHLADRPFNELSG 100 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEECC-cCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCH
Confidence 3689999999999999999998732 2233444432 21 112222111 134443321 1 11122
Q ss_pred HHHHHHHHHHHhccCeEEEEEeCCCC-CCccChhhhHHhhhcC-CC-CceEEEEcCchHHH
Q 038751 263 LNSLLEYIHTSIKEKKFFLILDDVWP-DDYSKWEPFHNCLMNG-LC-GSRILVTTRKETVA 320 (915)
Q Consensus 263 ~~~~~~~l~~~l~~k~~LlVlDdvw~-~~~~~~~~l~~~l~~~-~~-gs~iivTtR~~~v~ 320 (915)
.+...-.+.+.+-..+-++++|+.-. -+....+.+...+... .. |..||++|.+....
T Consensus 101 G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 101 GERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 23333345666777888999998732 2233344455555432 22 66788888776544
No 245
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=96.23 E-value=0.0014 Score=74.18 Aligned_cols=60 Identities=23% Similarity=0.232 Sum_probs=34.0
Q ss_pred cCCCCCcceEEEeeeCCCCCCCcccCccCccEEEEcCcCCCCCCCCCCCCCCcceeeccccc
Q 038751 726 LRPPPDIKSLEIMVFKGRTPSNWIGSLNKLKMLTLNSFVKCEIMPPLGKLPSLEILRIWHMR 787 (915)
Q Consensus 726 l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~Lp~L~~L~L~~~~ 787 (915)
+..+++|+.|++++|....+.. +..++.|+.|++++| .+..++.+..+++|+.++++++.
T Consensus 114 l~~~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L~l~~N-~i~~~~~~~~l~~L~~l~l~~n~ 173 (414)
T KOG0531|consen 114 LSSLVNLQVLDLSFNKITKLEG-LSTLTLLKELNLSGN-LISDISGLESLKSLKLLDLSYNR 173 (414)
T ss_pred hhhhhcchheeccccccccccc-hhhccchhhheeccC-cchhccCCccchhhhcccCCcch
Confidence 4445666666666666555533 344555666666665 33444445556666666666554
No 246
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.20 E-value=0.022 Score=54.93 Aligned_cols=40 Identities=28% Similarity=0.316 Sum_probs=29.2
Q ss_pred EEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCC
Q 038751 200 IISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFD 241 (915)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 241 (915)
++.|+|.+|+||||++..+.... ...-..++|+.......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~--~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI--ATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH--HhcCCEEEEEECCcchH
Confidence 36899999999999999887742 22334577887766544
No 247
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.20 E-value=0.029 Score=63.72 Aligned_cols=131 Identities=17% Similarity=0.085 Sum_probs=71.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCC--CCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHhc
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDP--FDEFRIAKAIIEGLEGSLPNLRELNSLLEYIHTSIK 275 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 275 (915)
..-|.|.|..|+|||+||+.+++... +.+.-.+..|+++.- ...+++++. +...+.+.+.
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~-----------------l~~vfse~~~ 492 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKF-----------------LNNVFSEALW 492 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHH-----------------HHHHHHHHHh
Confidence 45689999999999999999998543 444444555655541 111111111 2223345556
Q ss_pred cCeEEEEEeCCCC------CCccChhh----hHHhh----h-cCCCCceEEE--EcCchH-HHhhh----cCcCeEeCCC
Q 038751 276 EKKFFLILDDVWP------DDYSKWEP----FHNCL----M-NGLCGSRILV--TTRKET-VARMM----ESTDVISIKE 333 (915)
Q Consensus 276 ~k~~LlVlDdvw~------~~~~~~~~----l~~~l----~-~~~~gs~iiv--TtR~~~-v~~~~----~~~~~~~l~~ 333 (915)
..+-+|||||+.- .+..+|+. +..++ . ....+.+|.+ |..... ....+ -....+.|.+
T Consensus 493 ~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~a 572 (952)
T KOG0735|consen 493 YAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPA 572 (952)
T ss_pred hCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCC
Confidence 7899999999842 11223332 11112 1 1234555333 332211 11111 1134678888
Q ss_pred CCHHHHHHHHHHh
Q 038751 334 LSEQECWSLFKRF 346 (915)
Q Consensus 334 L~~~~~~~lf~~~ 346 (915)
+..++-.++++..
T Consensus 573 p~~~~R~~IL~~~ 585 (952)
T KOG0735|consen 573 PAVTRRKEILTTI 585 (952)
T ss_pred cchhHHHHHHHHH
Confidence 8888777776654
No 248
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.20 E-value=0.0029 Score=45.54 Aligned_cols=33 Identities=33% Similarity=0.524 Sum_probs=15.4
Q ss_pred CccEEEEcCcCCCCCCCC-CCCCCCcceeeccccc
Q 038751 754 KLKMLTLNSFVKCEIMPP-LGKLPSLEILRIWHMR 787 (915)
Q Consensus 754 ~L~~L~L~~~~~~~~l~~-l~~Lp~L~~L~L~~~~ 787 (915)
+|++|++++| ....+|+ +++|++|++|++++|+
T Consensus 2 ~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 2 NLEELDLSNN-QITDLPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp T-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSSC
T ss_pred cceEEEccCC-CCcccCchHhCCCCCCEEEecCCC
Confidence 4555555554 2223444 5555555555555543
No 249
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.18 E-value=0.03 Score=54.61 Aligned_cols=118 Identities=19% Similarity=0.132 Sum_probs=61.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCC--CCCHHHHHHHHHHHhhC--CCCC----------cccH
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSD--PFDEFRIAKAIIEGLEG--SLPN----------LREL 263 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~--~~~~~~~~~~i~~~l~~--~~~~----------~~~~ 263 (915)
-.+++|+|..|.|||||.+.++.-. ......+++.-.. ....... ...+.- +.+. .+..
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~~---~~~~G~i~~~g~~~~~~~~~~~----~~~i~~~~~~~~~~~~t~~e~lLS~G 100 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLY---DPTSGEILIDGVDLRDLDLESL----RKNIAYVPQDPFLFSGTIRENILSGG 100 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCC---CCCCCEEEECCEEhhhcCHHHH----HhhEEEEcCCchhccchHHHHhhCHH
Confidence 3689999999999999999998732 1223333322110 0011111 111110 0000 1111
Q ss_pred HHHHHHHHHHhccCeEEEEEeCCCC-CCccChhhhHHhhhcCCCCceEEEEcCchHHHhh
Q 038751 264 NSLLEYIHTSIKEKKFFLILDDVWP-DDYSKWEPFHNCLMNGLCGSRILVTTRKETVARM 322 (915)
Q Consensus 264 ~~~~~~l~~~l~~k~~LlVlDdvw~-~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~ 322 (915)
+...-.+.+.+-.++-++++|+-.. -|......+...+.....+..||++|.+......
T Consensus 101 ~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 160 (171)
T cd03228 101 QRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD 160 (171)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh
Confidence 2222235566667788999998743 2223344455555443345678888887766543
No 250
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=96.17 E-value=0.0044 Score=60.12 Aligned_cols=41 Identities=24% Similarity=0.215 Sum_probs=29.2
Q ss_pred ceEEEEEEecCCCcHHHHHHHHhcccccc-cCCCeEEEEEeCCC
Q 038751 197 AVQIISLVGMGGIGKTTLAQFAYNDKDVI-ENFDKRIWVCVSDP 239 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~vs~~ 239 (915)
...++.++|+.|+|||.||+.+.+- .. +.....+-++.+.-
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~--l~~~~~~~~~~~d~s~~ 43 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAEL--LFVGSERPLIRIDMSEY 43 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHH--HT-SSCCEEEEEEGGGH
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHH--hccCCccchHHHhhhcc
Confidence 3568899999999999999998873 33 33445555666553
No 251
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.17 E-value=0.02 Score=59.32 Aligned_cols=86 Identities=17% Similarity=0.144 Sum_probs=53.4
Q ss_pred EEEEEEecCCCcHHHHHHHHhcccccccCC-CeEEEEEeCCCCC-HHHHHHHHHHHhhCC-------CCCcccHH-----
Q 038751 199 QIISLVGMGGIGKTTLAQFAYNDKDVIENF-DKRIWVCVSDPFD-EFRIAKAIIEGLEGS-------LPNLRELN----- 264 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~vs~~~~-~~~~~~~i~~~l~~~-------~~~~~~~~----- 264 (915)
+.++|.|.+|+|||||++.+++ .++.+| +.++++-+++... +.++.+++...-... ..+.....
T Consensus 70 Qr~~If~~~G~GKTtLa~~i~~--~i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~~ 147 (274)
T cd01133 70 GKIGLFGGAGVGKTVLIMELIN--NIAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARVA 147 (274)
T ss_pred CEEEEecCCCCChhHHHHHHHH--HHHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 5689999999999999999998 444455 4566777776543 445555554321111 11111111
Q ss_pred HHHHHHHHHh--c-cCeEEEEEeCC
Q 038751 265 SLLEYIHTSI--K-EKKFFLILDDV 286 (915)
Q Consensus 265 ~~~~~l~~~l--~-~k~~LlVlDdv 286 (915)
...-.+.+++ + ++.+|+++||+
T Consensus 148 ~~a~~~AEyfr~~~g~~Vl~~~Dsl 172 (274)
T cd01133 148 LTGLTMAEYFRDEEGQDVLLFIDNI 172 (274)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEeCh
Confidence 1222344555 3 89999999998
No 252
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.16 E-value=0.039 Score=56.26 Aligned_cols=125 Identities=18% Similarity=0.155 Sum_probs=71.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCC-----CCCHHHHHHHHHHHhhCC------CCCcccHHHH
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSD-----PFDEFRIAKAIIEGLEGS------LPNLRELNSL 266 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-----~~~~~~~~~~i~~~l~~~------~~~~~~~~~~ 266 (915)
-.+++|||.+|+||||+++.+..= ...-...++..-.+ .....+-..++++..+.. .+..-+..+.
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~L---~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQr 115 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILGL---EEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQR 115 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHcC---cCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhh
Confidence 468999999999999999999862 22223333333211 112334455555555432 1222223333
Q ss_pred HH-HHHHHhccCeEEEEEeCCCCC-CccChhhhHHhhhc--CCCCceEEEEcCchHHHhhhcC
Q 038751 267 LE-YIHTSIKEKKFFLILDDVWPD-DYSKWEPFHNCLMN--GLCGSRILVTTRKETVARMMES 325 (915)
Q Consensus 267 ~~-~l~~~l~~k~~LlVlDdvw~~-~~~~~~~l~~~l~~--~~~gs~iivTtR~~~v~~~~~~ 325 (915)
++ .+.+.+.-++-++|.|..-+. +...-.++...+.. ...|-..+..|-+-.+++.+..
T Consensus 116 QRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isd 178 (268)
T COG4608 116 QRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISD 178 (268)
T ss_pred hhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcc
Confidence 33 456788889999999986321 11112233333332 2356778888888888776543
No 253
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.15 E-value=0.026 Score=53.17 Aligned_cols=21 Identities=43% Similarity=0.513 Sum_probs=19.3
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 038751 200 IISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~ 220 (915)
+|.++|++|+||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999999875
No 254
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.14 E-value=0.014 Score=66.46 Aligned_cols=88 Identities=18% Similarity=0.257 Sum_probs=58.8
Q ss_pred cCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHh
Q 038751 195 RNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLRELNSLLEYIHTSI 274 (915)
Q Consensus 195 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 274 (915)
....++..++|++|+||||||+-++++. .| .++=|++|+.-....+-..|...+.... .+
T Consensus 323 RP~kKilLL~GppGlGKTTLAHViAkqa----GY-sVvEINASDeRt~~~v~~kI~~avq~~s---------------~l 382 (877)
T KOG1969|consen 323 RPPKKILLLCGPPGLGKTTLAHVIAKQA----GY-SVVEINASDERTAPMVKEKIENAVQNHS---------------VL 382 (877)
T ss_pred CCccceEEeecCCCCChhHHHHHHHHhc----Cc-eEEEecccccccHHHHHHHHHHHHhhcc---------------cc
Confidence 4567899999999999999999998743 23 3556777877766666655554443221 12
Q ss_pred --ccCeEEEEEeCCCCCCccChhhhHHhhh
Q 038751 275 --KEKKFFLILDDVWPDDYSKWEPFHNCLM 302 (915)
Q Consensus 275 --~~k~~LlVlDdvw~~~~~~~~~l~~~l~ 302 (915)
.+++.-||+|.+.-......+.+...+.
T Consensus 383 ~adsrP~CLViDEIDGa~~~~Vdvilslv~ 412 (877)
T KOG1969|consen 383 DADSRPVCLVIDEIDGAPRAAVDVILSLVK 412 (877)
T ss_pred ccCCCcceEEEecccCCcHHHHHHHHHHHH
Confidence 2678889999995443334555555444
No 255
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.14 E-value=0.0044 Score=69.76 Aligned_cols=49 Identities=22% Similarity=0.243 Sum_probs=41.0
Q ss_pred ccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhc
Q 038751 172 DVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 172 ~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
+++|-++.+++|++.|.....+.+...+++.++|++|+||||||+.+.+
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~ 125 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKS 125 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHH
Confidence 5899999999999999544332344568999999999999999999987
No 256
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.12 E-value=0.026 Score=62.98 Aligned_cols=155 Identities=19% Similarity=0.301 Sum_probs=87.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHhccC
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLRELNSLLEYIHTSIKEK 277 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 277 (915)
..=|.+||++|+|||-||++|+| +.+-+| ++|-.+ + ++..--+ .....+.+.+.+.-...
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVAN--Eag~NF-----isVKGP----E----LlNkYVG-----ESErAVR~vFqRAR~sa 604 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVAN--EAGANF-----ISVKGP----E----LLNKYVG-----ESERAVRQVFQRARASA 604 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhh--hccCce-----EeecCH----H----HHHHHhh-----hHHHHHHHHHHHhhcCC
Confidence 45688999999999999999999 444455 333321 1 1111111 11223344444555678
Q ss_pred eEEEEEeCCCC-----CCccChh------hhHHhhhc--CCCCceEEEEcCchHHHhh--hcC---cCeEeCCCCCHHHH
Q 038751 278 KFFLILDDVWP-----DDYSKWE------PFHNCLMN--GLCGSRILVTTRKETVARM--MES---TDVISIKELSEQEC 339 (915)
Q Consensus 278 ~~LlVlDdvw~-----~~~~~~~------~l~~~l~~--~~~gs~iivTtR~~~v~~~--~~~---~~~~~l~~L~~~~~ 339 (915)
+++|+||.+.. .+...|. ++..-+.. ...|.-||-.|..+++-.. +.. ....-++.-+.+|-
T Consensus 605 PCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR 684 (802)
T KOG0733|consen 605 PCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEER 684 (802)
T ss_pred CeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHH
Confidence 99999999842 1112222 22222222 2356666666665544332 122 45677777888888
Q ss_pred HHHHHHhHcCCCCC-CchhHHHHHHHHHHHhcCCCc
Q 038751 340 WSLFKRFAFSGRSP-TECEQLEEIGRKIVGKCKGLP 374 (915)
Q Consensus 340 ~~lf~~~~~~~~~~-~~~~~l~~~~~~i~~~c~G~P 374 (915)
.++++...-....+ ..+-+++++|+. .+|.|.-
T Consensus 685 ~~ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gft 718 (802)
T KOG0733|consen 685 VAILKTITKNTKPPLSSDVDLDEIARN--TKCEGFT 718 (802)
T ss_pred HHHHHHHhccCCCCCCcccCHHHHhhc--ccccCCc
Confidence 89998877532222 223457776654 3555544
No 257
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.11 E-value=0.053 Score=61.68 Aligned_cols=159 Identities=21% Similarity=0.187 Sum_probs=81.5
Q ss_pred CccccchHHHHHHHHHHhc---c-cccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHH
Q 038751 171 SDVRGRDEEKNILKRKLLC---E-SNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIA 246 (915)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~---~-~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~ 246 (915)
.++.|.+..++.+.+.... . ...+-...+-|.++|++|+|||.+|+.+.+. ....| +-+..+.
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e--~~~~~---~~l~~~~-------- 294 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIAND--WQLPL---LRLDVGK-------- 294 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEEhHH--------
Confidence 4577876655555442211 0 0001224567889999999999999999884 22222 1122111
Q ss_pred HHHHHHhhCCCCCcccHHHHHHHHHHHhccCeEEEEEeCCCCC--------CccCh----hhhHHhhhcCCCCceEEEEc
Q 038751 247 KAIIEGLEGSLPNLRELNSLLEYIHTSIKEKKFFLILDDVWPD--------DYSKW----EPFHNCLMNGLCGSRILVTT 314 (915)
Q Consensus 247 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~--------~~~~~----~~l~~~l~~~~~gs~iivTt 314 (915)
+.....+. ....+.+.+...-...+++|++|++... +...- ..+...+.....+.-||.||
T Consensus 295 ------l~~~~vGe-se~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTT 367 (489)
T CHL00195 295 ------LFGGIVGE-SESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATA 367 (489)
T ss_pred ------hcccccCh-HHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEec
Confidence 11111111 1112222333222357899999998421 00001 11222222233344456677
Q ss_pred CchHH-H----hhhcCcCeEeCCCCCHHHHHHHHHHhHcC
Q 038751 315 RKETV-A----RMMESTDVISIKELSEQECWSLFKRFAFS 349 (915)
Q Consensus 315 R~~~v-~----~~~~~~~~~~l~~L~~~~~~~lf~~~~~~ 349 (915)
..... . +...-...+.++.-+.++-.++|+.+...
T Consensus 368 N~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~ 407 (489)
T CHL00195 368 NNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQK 407 (489)
T ss_pred CChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhh
Confidence 65431 1 11122567889888999999999877644
No 258
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.11 E-value=0.09 Score=64.03 Aligned_cols=180 Identities=18% Similarity=0.194 Sum_probs=94.4
Q ss_pred cCccccchHHHHHHHHHHhccccc-------ccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCH
Q 038751 170 VSDVRGRDEEKNILKRKLLCESNE-------ERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDE 242 (915)
Q Consensus 170 ~~~~~Gr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 242 (915)
-.++.|.+..++.+.+.+.-+-.. +-...+-|.++|++|+|||++|+.+++. ....| +.+...
T Consensus 452 ~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e--~~~~f-----i~v~~~--- 521 (733)
T TIGR01243 452 WSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATE--SGANF-----IAVRGP--- 521 (733)
T ss_pred hhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE-----EEEehH---
Confidence 345788888777777765421110 1123455889999999999999999984 33232 222210
Q ss_pred HHHHHHHHHHhhCCCCCcccHHHHHHHHHHHhccCeEEEEEeCCCCC------C--cc----ChhhhHHhhhc--CCCCc
Q 038751 243 FRIAKAIIEGLEGSLPNLRELNSLLEYIHTSIKEKKFFLILDDVWPD------D--YS----KWEPFHNCLMN--GLCGS 308 (915)
Q Consensus 243 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~------~--~~----~~~~l~~~l~~--~~~gs 308 (915)
+++... .+ .....+...+...-...+.+|++|++..- . .. ....+...+.. ...+.
T Consensus 522 -----~l~~~~----vG-ese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v 591 (733)
T TIGR01243 522 -----EILSKW----VG-ESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNV 591 (733)
T ss_pred -----HHhhcc----cC-cHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCE
Confidence 111111 11 11122333333333567899999998421 0 00 11122222332 12344
Q ss_pred eEEEEcCchHHHhh--h---cCcCeEeCCCCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCCCc
Q 038751 309 RILVTTRKETVARM--M---ESTDVISIKELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKGLP 374 (915)
Q Consensus 309 ~iivTtR~~~v~~~--~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~P 374 (915)
-||.||..+..... + .-...+.+...+.++-.++|+.+.-... .....++ ..+++.+.|.-
T Consensus 592 ~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~-~~~~~~l----~~la~~t~g~s 657 (733)
T TIGR01243 592 VVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMP-LAEDVDL----EELAEMTEGYT 657 (733)
T ss_pred EEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCC-CCccCCH----HHHHHHcCCCC
Confidence 56667765543221 1 2256788888899998889876543221 1122233 34566677654
No 259
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.11 E-value=0.033 Score=54.29 Aligned_cols=122 Identities=14% Similarity=0.160 Sum_probs=64.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcc---cccccC---CC--eEEEEEeCCCCCHHHHHHHHHHHhhCCCC------C-ccc
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYND---KDVIEN---FD--KRIWVCVSDPFDEFRIAKAIIEGLEGSLP------N-LRE 262 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~---~~~~~~---F~--~~~wv~vs~~~~~~~~~~~i~~~l~~~~~------~-~~~ 262 (915)
-.+++|+|+.|+|||||.+.+..+ ..+... |. ...|+ .+ .+.++.++.... . .+.
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LSg 90 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLSG 90 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCCH
Confidence 368999999999999999988532 111111 11 12232 22 344555543211 1 111
Q ss_pred HHHHHHHHHHHhccC--eEEEEEeCCCC-CCccChhhhHHhhhcC-CCCceEEEEcCchHHHhhhcCcCeEeC
Q 038751 263 LNSLLEYIHTSIKEK--KFFLILDDVWP-DDYSKWEPFHNCLMNG-LCGSRILVTTRKETVARMMESTDVISI 331 (915)
Q Consensus 263 ~~~~~~~l~~~l~~k--~~LlVlDdvw~-~~~~~~~~l~~~l~~~-~~gs~iivTtR~~~v~~~~~~~~~~~l 331 (915)
.+...-.+.+.+-.+ +-++++|+.-. -+....+.+...+... ..|..||++|.+...... ...++.+
T Consensus 91 Gq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~--~d~i~~l 161 (176)
T cd03238 91 GELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSS--ADWIIDF 161 (176)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh--CCEEEEE
Confidence 222233345555566 77888998732 2223333444444432 246778888888766543 3344444
No 260
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.10 E-value=0.02 Score=60.69 Aligned_cols=87 Identities=20% Similarity=0.169 Sum_probs=46.0
Q ss_pred ceEEEEEEecCCCcHHHHHHHHhcccccc-cCCCeEEEEEeCCC-CCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHh
Q 038751 197 AVQIISLVGMGGIGKTTLAQFAYNDKDVI-ENFDKRIWVCVSDP-FDEFRIAKAIIEGLEGSLPNLRELNSLLEYIHTSI 274 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 274 (915)
..+++.|+|++|+||||++..++.....+ +.+ .+..|+.... ....+.+....+.++.......+...+...+.+.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~-~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~- 270 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNK-KVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRL- 270 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCC-eEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHc-
Confidence 45799999999999999998877643222 222 3455554331 1222333333333333322223344454444433
Q ss_pred ccCeEEEEEeCC
Q 038751 275 KEKKFFLILDDV 286 (915)
Q Consensus 275 ~~k~~LlVlDdv 286 (915)
.+ .=+|++|..
T Consensus 271 ~~-~d~vliDt~ 281 (282)
T TIGR03499 271 RD-KDLILIDTA 281 (282)
T ss_pred cC-CCEEEEeCC
Confidence 32 346777753
No 261
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=96.09 E-value=0.17 Score=53.84 Aligned_cols=60 Identities=10% Similarity=0.072 Sum_probs=38.6
Q ss_pred cccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHH
Q 038751 173 VRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRI 245 (915)
Q Consensus 173 ~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~ 245 (915)
++=..+....++..+... +-|.|.|.+|+||||+|+.++.. .... .+.|..+...+..++
T Consensus 47 y~f~~~~~~~vl~~l~~~--------~~ilL~G~pGtGKTtla~~lA~~--l~~~---~~rV~~~~~l~~~Dl 106 (327)
T TIGR01650 47 YLFDKATTKAICAGFAYD--------RRVMVQGYHGTGKSTHIEQIAAR--LNWP---CVRVNLDSHVSRIDL 106 (327)
T ss_pred ccCCHHHHHHHHHHHhcC--------CcEEEEeCCCChHHHHHHHHHHH--HCCC---eEEEEecCCCChhhc
Confidence 443444556677777432 35899999999999999999873 3222 235556555554444
No 262
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.06 E-value=0.024 Score=56.35 Aligned_cols=88 Identities=18% Similarity=0.110 Sum_probs=49.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCC-CCCHHHHHHHHHHHhhCCCC---CcccH-HHHHHHHHH
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSD-PFDEFRIAKAIIEGLEGSLP---NLREL-NSLLEYIHT 272 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~---~~~~~-~~~~~~l~~ 272 (915)
++||.+||+.|+||||.+-+++.....+ =..+..++... .....+-++...+.++.... ...+. +.+.+.+.+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~ 78 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEK 78 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHH
Confidence 3789999999999998876666532222 33466676643 24556777777887775421 12222 223333433
Q ss_pred HhccCeEEEEEeCCC
Q 038751 273 SIKEKKFFLILDDVW 287 (915)
Q Consensus 273 ~l~~k~~LlVlDdvw 287 (915)
.-.++.=+|++|-.-
T Consensus 79 ~~~~~~D~vlIDT~G 93 (196)
T PF00448_consen 79 FRKKGYDLVLIDTAG 93 (196)
T ss_dssp HHHTTSSEEEEEE-S
T ss_pred HhhcCCCEEEEecCC
Confidence 322233477788664
No 263
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.04 E-value=0.05 Score=51.26 Aligned_cols=105 Identities=16% Similarity=0.137 Sum_probs=58.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHhccC
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLRELNSLLEYIHTSIKEK 277 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 277 (915)
-.+++|+|..|.|||||++.+..-.. .....+|+.-.. .+.-. +..+..+...-.+.+.+-.+
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~~~~-------------~i~~~-~~lS~G~~~rv~laral~~~ 88 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGELE---PDEGIVTWGSTV-------------KIGYF-EQLSGGEKMRLALAKLLLEN 88 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCC---CCceEEEECCeE-------------EEEEE-ccCCHHHHHHHHHHHHHhcC
Confidence 36899999999999999999987421 223334332100 00000 00122222333455666677
Q ss_pred eEEEEEeCCCC-CCccChhhhHHhhhcCCCCceEEEEcCchHHHh
Q 038751 278 KFFLILDDVWP-DDYSKWEPFHNCLMNGLCGSRILVTTRKETVAR 321 (915)
Q Consensus 278 ~~LlVlDdvw~-~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~ 321 (915)
+-++++|+.-. -|......+...+... +..||++|.+.....
T Consensus 89 p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~ 131 (144)
T cd03221 89 PNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLD 131 (144)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHH
Confidence 78999998732 2233344455555443 246777777655443
No 264
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.99 E-value=0.07 Score=51.70 Aligned_cols=118 Identities=13% Similarity=0.013 Sum_probs=61.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHhccccc-ccC--CC---eEEEEEeCCCCCHHHHHHHHHHHhhC-CCCCcccHHHHHHHH
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYNDKDV-IEN--FD---KRIWVCVSDPFDEFRIAKAIIEGLEG-SLPNLRELNSLLEYI 270 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~--F~---~~~wv~vs~~~~~~~~~~~i~~~l~~-~~~~~~~~~~~~~~l 270 (915)
-.+++|+|..|.|||||++.+..-... .+. ++ ...+ +.+...... ..+.+.+.. .....+..+...-.+
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~--~~q~~~~~~--~tv~~nl~~~~~~~LS~G~~~rv~l 102 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLF--LPQRPYLPL--GTLREQLIYPWDDVLSGGEQQRLAF 102 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEE--ECCCCcccc--ccHHHHhhccCCCCCCHHHHHHHHH
Confidence 357999999999999999999874221 111 11 1222 233221110 122222211 112222333334445
Q ss_pred HHHhccCeEEEEEeCCCC-CCccChhhhHHhhhcCCCCceEEEEcCchHHHh
Q 038751 271 HTSIKEKKFFLILDDVWP-DDYSKWEPFHNCLMNGLCGSRILVTTRKETVAR 321 (915)
Q Consensus 271 ~~~l~~k~~LlVlDdvw~-~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~ 321 (915)
.+.+-.++=++++|+--. -|......+...+... +..||++|.+.....
T Consensus 103 aral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~ 152 (166)
T cd03223 103 ARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWK 152 (166)
T ss_pred HHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHh
Confidence 666667788899998632 1222333444444433 356777777766543
No 265
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=95.99 E-value=0.0028 Score=75.09 Aligned_cols=84 Identities=18% Similarity=0.182 Sum_probs=56.3
Q ss_pred CCCCCCceEEEEecCCCCchhhhhhhhhHHHHhhHHHHHhhcCCCCCcceEEEeeeCCCCCCCcccCccCccEEEEcCcC
Q 038751 685 KKKNLIDLILIFNEREESDDEKASEEMNEEKEAKHEAVCEALRPPPDIKSLEIMVFKGRTPSNWIGSLNKLKMLTLNSFV 764 (915)
Q Consensus 685 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~ 764 (915)
.++.|++|.+++-.. ...++.....++|||..|+|++.+...+ ..++.|+||+.|.+.+-.
T Consensus 146 ~LPsL~sL~i~~~~~------------------~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe 206 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQF------------------DNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLE 206 (699)
T ss_pred hCcccceEEecCcee------------------cchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCC
Confidence 357788888875431 2233445556788888888888876666 446688888888886553
Q ss_pred CC--CCCCCCCCCCCcceeeccccc
Q 038751 765 KC--EIMPPLGKLPSLEILRIWHMR 787 (915)
Q Consensus 765 ~~--~~l~~l~~Lp~L~~L~L~~~~ 787 (915)
.. ..+-.+.+|.+|+.|+++.-.
T Consensus 207 ~e~~~~l~~LF~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 207 FESYQDLIDLFNLKKLRVLDISRDK 231 (699)
T ss_pred CCchhhHHHHhcccCCCeeeccccc
Confidence 22 234456778888888887644
No 266
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.99 E-value=0.03 Score=65.87 Aligned_cols=154 Identities=21% Similarity=0.252 Sum_probs=83.4
Q ss_pred CccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCC-----CeEEEEEeCCCCCHHHH
Q 038751 171 SDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENF-----DKRIWVCVSDPFDEFRI 245 (915)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-----~~~~wv~vs~~~~~~~~ 245 (915)
+.++||++|++++++.|..... +- -.++|.+|||||++|.-++.. -+.+.- +..++.
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~K----NN--PvLiGEpGVGKTAIvEGLA~r-Iv~g~VP~~L~~~~i~s----------- 231 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTK----NN--PVLVGEPGVGKTAIVEGLAQR-IVNGDVPESLKDKRIYS----------- 231 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCC----CC--CeEecCCCCCHHHHHHHHHHH-HhcCCCCHHHcCCEEEE-----------
Confidence 3489999999999999987532 12 246899999999998554441 111111 111111
Q ss_pred HHHHHHHhhCCCCCcccHHHHHHHHHHHh-ccCeEEEEEeCCCC------C---CccChhhhHHhhhcCCCCceEEEEcC
Q 038751 246 AKAIIEGLEGSLPNLRELNSLLEYIHTSI-KEKKFFLILDDVWP------D---DYSKWEPFHNCLMNGLCGSRILVTTR 315 (915)
Q Consensus 246 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdvw~------~---~~~~~~~l~~~l~~~~~gs~iivTtR 315 (915)
-++..-..+.... .+.++....+.+.+ +.++..|++|.++. . ..+.-+-++.+|..+. -++|-.|.
T Consensus 232 -LD~g~LvAGakyR-GeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGe--L~~IGATT 307 (786)
T COG0542 232 -LDLGSLVAGAKYR-GEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGE--LRCIGATT 307 (786)
T ss_pred -ecHHHHhcccccc-CcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCC--eEEEEecc
Confidence 0111112222111 23344444444444 34589999999864 1 0112222444443321 24444444
Q ss_pred chHHHhh-------hcCcCeEeCCCCCHHHHHHHHHHh
Q 038751 316 KETVARM-------MESTDVISIKELSEQECWSLFKRF 346 (915)
Q Consensus 316 ~~~v~~~-------~~~~~~~~l~~L~~~~~~~lf~~~ 346 (915)
..+--.. -.....+.++..+.+++..+++-.
T Consensus 308 ~~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGl 345 (786)
T COG0542 308 LDEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGL 345 (786)
T ss_pred HHHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHH
Confidence 3332221 123568889999999999988653
No 267
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.97 E-value=0.035 Score=59.52 Aligned_cols=58 Identities=21% Similarity=0.188 Sum_probs=41.2
Q ss_pred ceEEEEEEecCCCcHHHHHHHHhcccccc----cCCCeEEEEEeCCCCCHHHHHHHHHHHhhC
Q 038751 197 AVQIISLVGMGGIGKTTLAQFAYNDKDVI----ENFDKRIWVCVSDPFDEFRIAKAIIEGLEG 255 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 255 (915)
.-+++-|+|++|+|||+|+..++-..... +.=..++||+....|+..++.+ +++.++.
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~ 156 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGV 156 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCC
Confidence 45899999999999999997765322221 1113688999999888887754 5565543
No 268
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=95.96 E-value=0.0026 Score=75.35 Aligned_cols=98 Identities=20% Similarity=0.222 Sum_probs=66.0
Q ss_pred cceEEEEEEcccccc--Cccc-cCCCCceeEEEeccCCCCceeccccchhccccCCcceeeecCCCCCccccccccCCCc
Q 038751 533 EKLRHLMLVLGFWAK--FPFS-IFDAKTLHSLILVYSSNNQVAASPVLQGLFDQLTCLRALKIEDLPPTIKIPKGLENLI 609 (915)
Q Consensus 533 ~~~r~Lsl~~~~~~~--~~~~-~~~~~~Lr~L~l~~~~~~lrv~~~~lp~~i~~L~~Lr~L~l~~~~~~~~lP~~i~~L~ 609 (915)
..+++|++.+...-. .+.. ..-+|.||+|.+.+-. ....++-....++++|+.|||++++.+ .+ .+|++|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~----~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~Lk 195 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQ----FDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGISRLK 195 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCce----ecchhHHHHhhccCccceeecCCCCcc-Cc-HHHhccc
Confidence 789999998754321 2222 3458999999997742 012234455678999999999998876 44 6788888
Q ss_pred CCCcccCcccCC-------cCCCCCCCCccCcee
Q 038751 610 HLRYLKLSMVPN-------GIERLTSLRTLSEFA 636 (915)
Q Consensus 610 ~Lr~L~l~~lP~-------~i~~L~~L~~L~~~~ 636 (915)
||+.|.+..++- .+.+|++|+.|+++.
T Consensus 196 nLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~ 229 (699)
T KOG3665|consen 196 NLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISR 229 (699)
T ss_pred cHHHHhccCCCCCchhhHHHHhcccCCCeeeccc
Confidence 888887555441 355666666666553
No 269
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.96 E-value=0.021 Score=55.15 Aligned_cols=79 Identities=16% Similarity=0.238 Sum_probs=44.4
Q ss_pred EEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHhcc--Ce
Q 038751 201 ISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLRELNSLLEYIHTSIKE--KK 278 (915)
Q Consensus 201 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~--k~ 278 (915)
+.|.|.+|+|||++|.++... ....++++.-.+.++. ++.+.|.+........-... +....+.+.+.. +.
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~-----~~~~~~y~at~~~~d~-em~~rI~~H~~~R~~~w~t~-E~~~~l~~~l~~~~~~ 74 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE-----LGGPVTYIATAEAFDD-EMAERIARHRKRRPAHWRTI-ETPRDLVSALKELDPG 74 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh-----cCCCeEEEEccCcCCH-HHHHHHHHHHHhCCCCceEe-ecHHHHHHHHHhcCCC
Confidence 679999999999999888652 2235677777776655 34444443322222221111 122223333321 23
Q ss_pred EEEEEeCC
Q 038751 279 FFLILDDV 286 (915)
Q Consensus 279 ~LlVlDdv 286 (915)
-.+++|.+
T Consensus 75 ~~VLIDcl 82 (169)
T cd00544 75 DVVLIDCL 82 (169)
T ss_pred CEEEEEcH
Confidence 37999987
No 270
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.94 E-value=0.0012 Score=65.88 Aligned_cols=257 Identities=18% Similarity=0.086 Sum_probs=135.4
Q ss_pred cceEEEEEEcccccc-----CccccCCCCceeEEEeccCCCCcee-----ccccchhccccCCcceeeecCCCCCccccc
Q 038751 533 EKLRHLMLVLGFWAK-----FPFSIFDAKTLHSLILVYSSNNQVA-----ASPVLQGLFDQLTCLRALKIEDLPPTIKIP 602 (915)
Q Consensus 533 ~~~r~Lsl~~~~~~~-----~~~~~~~~~~Lr~L~l~~~~~~lrv-----~~~~lp~~i~~L~~Lr~L~l~~~~~~~~lP 602 (915)
..+..+++++|.+.. +...+.+-.+||...+++.+...-+ .+..+.+.+-++++|+..+|++|......|
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~ 109 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP 109 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence 456677777777642 2233455667777766654321111 344466777888999999999887766666
Q ss_pred cccCCCcCCCcccCcccCCcCCCCCCCCccCceeecccCCccCCCCcCCCCCcCccccccceeEcCccCCCChhhHhHhh
Q 038751 603 KGLENLIHLRYLKLSMVPNGIERLTSLRTLSEFAVARVGGKYSSKSCNLEGLRPLNHLRGFLQISGLGNVTDADEAKNAH 682 (915)
Q Consensus 603 ~~i~~L~~Lr~L~l~~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~ 682 (915)
..++.+ |++-+.|.+|.+.+++.+.. .+..|+ +.|.+| +....
T Consensus 110 e~L~d~--------------is~~t~l~HL~l~NnGlGp~----aG~rig--kal~~l-----------------a~nKK 152 (388)
T COG5238 110 EELGDL--------------ISSSTDLVHLKLNNNGLGPI----AGGRIG--KALFHL-----------------AYNKK 152 (388)
T ss_pred hHHHHH--------------HhcCCCceeEEeecCCCCcc----chhHHH--HHHHHH-----------------HHHhh
Confidence 655432 55667777776554443221 011111 011111 11122
Q ss_pred ccCCCCCCceEEEEecCCCCchhhhhhhhhHHHHhhHHHHHhhcCCCCCcceEEEeeeCCCCCCCc--------ccCccC
Q 038751 683 LEKKKNLIDLILIFNEREESDDEKASEEMNEEKEAKHEAVCEALRPPPDIKSLEIMVFKGRTPSNW--------IGSLNK 754 (915)
Q Consensus 683 l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~--------~~~l~~ 754 (915)
..+.+.|+......|..... ........+..+.+|+.+.+..|.+. |.. +..+++
T Consensus 153 aa~kp~Le~vicgrNRleng---------------s~~~~a~~l~sh~~lk~vki~qNgIr--pegv~~L~~~gl~y~~~ 215 (388)
T COG5238 153 AADKPKLEVVICGRNRLENG---------------SKELSAALLESHENLKEVKIQQNGIR--PEGVTMLAFLGLFYSHS 215 (388)
T ss_pred hccCCCceEEEeccchhccC---------------cHHHHHHHHHhhcCceeEEeeecCcC--cchhHHHHHHHHHHhCc
Confidence 34556677766665543210 11122233455567777777766542 221 125778
Q ss_pred ccEEEEcCcCCCCC----C-CCCCCCCCcceeeccccccceEeC-ccccCCcccccccccccCCCcccccCcccceeeec
Q 038751 755 LKMLTLNSFVKCEI----M-PPLGKLPSLEILRIWHMRSVKRVG-DEFLGMEISDHIHIHGTSSSSSVIAFPKLQKLELT 828 (915)
Q Consensus 755 L~~L~L~~~~~~~~----l-~~l~~Lp~L~~L~L~~~~~l~~~~-~~~~~~~~l~~l~l~~~~~~~~~~~f~~L~~L~l~ 828 (915)
|+.|+|.+|..... + ..+..++.|..|.+..|- +..-+ ..+...- .-..+|+|..|.+.
T Consensus 216 LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCl-ls~~G~~~v~~~f--------------~e~~~p~l~~L~~~ 280 (388)
T COG5238 216 LEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCL-LSNEGVKSVLRRF--------------NEKFVPNLMPLPGD 280 (388)
T ss_pred ceeeeccccchhhhhHHHHHHHhcccchhhhccccchh-hccccHHHHHHHh--------------hhhcCCCccccccc
Confidence 88888877642210 0 013456778888888775 22211 1111100 01357778777776
Q ss_pred Cccccc-ccc------cCCCCcccCcccceeecccCccccC
Q 038751 829 GMDELE-EWD------FGNDDITIMPHIKSLYITYCEKLKS 862 (915)
Q Consensus 829 ~~~~l~-~~~------~~~~~~~~lp~L~~L~l~~c~~L~~ 862 (915)
+...-. .+. +.. .++|-|..|.+.++ .++.
T Consensus 281 Yne~~~~~i~~~~l~~~e~---~~~p~L~~le~ngN-r~~E 317 (388)
T COG5238 281 YNERRGGIILDISLNEFEQ---DAVPLLVDLERNGN-RIKE 317 (388)
T ss_pred hhhhcCceeeeechhhhhh---cccHHHHHHHHccC-cchh
Confidence 642111 111 222 27888988888876 3443
No 271
>PRK06696 uridine kinase; Validated
Probab=95.93 E-value=0.0088 Score=61.21 Aligned_cols=43 Identities=21% Similarity=0.220 Sum_probs=33.9
Q ss_pred chHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcc
Q 038751 176 RDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 176 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
|.+-+++|.+.+.... .+...+|+|.|.+|+||||||+.+.+.
T Consensus 3 ~~~~~~~la~~~~~~~---~~~~~iI~I~G~sgsGKSTlA~~L~~~ 45 (223)
T PRK06696 3 RKQLIKELAEHILTLN---LTRPLRVAIDGITASGKTTFADELAEE 45 (223)
T ss_pred HHHHHHHHHHHHHHhC---CCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 5666777777776531 336789999999999999999999873
No 272
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.93 E-value=0.045 Score=59.20 Aligned_cols=105 Identities=21% Similarity=0.208 Sum_probs=62.1
Q ss_pred ceEEEEEEecCCCcHH-HHHHHHhcccccccCCCeEEEEEeCCC-CCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHh
Q 038751 197 AVQIISLVGMGGIGKT-TLAQFAYNDKDVIENFDKRIWVCVSDP-FDEFRIAKAIIEGLEGSLPNLRELNSLLEYIHTSI 274 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKT-tLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 274 (915)
+.++|.+||+.|+||| |||+..+.-.. ...=..++.|+.... ....+-++.-.+-++.+.....+..++...+...
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~-~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l- 279 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVM-LKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEAL- 279 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHh-hccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHh-
Confidence 3689999999999997 66766665321 122245667766543 4556666666666766555555556665555443
Q ss_pred ccCeEEEEEeCCCCC--CccChhhhHHhhhcC
Q 038751 275 KEKKFFLILDDVWPD--DYSKWEPFHNCLMNG 304 (915)
Q Consensus 275 ~~k~~LlVlDdvw~~--~~~~~~~l~~~l~~~ 304 (915)
++. =+|.+|-+... +......+...+...
T Consensus 280 ~~~-d~ILVDTaGrs~~D~~~i~el~~~~~~~ 310 (407)
T COG1419 280 RDC-DVILVDTAGRSQYDKEKIEELKELIDVS 310 (407)
T ss_pred hcC-CEEEEeCCCCCccCHHHHHHHHHHHhcc
Confidence 233 36667877532 223444455555443
No 273
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.92 E-value=0.029 Score=62.70 Aligned_cols=98 Identities=19% Similarity=0.261 Sum_probs=63.2
Q ss_pred cCccccchHHHHHHHHHHhccccc------ccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHH
Q 038751 170 VSDVRGRDEEKNILKRKLLCESNE------ERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEF 243 (915)
Q Consensus 170 ~~~~~Gr~~~~~~l~~~L~~~~~~------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 243 (915)
-.++=|.++.+.++.+++..-... +-...+=|.++|++|+|||.||++++++. .-. ++.++.
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel--~vP-----f~~isA----- 256 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL--GVP-----FLSISA----- 256 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc--CCc-----eEeecc-----
Confidence 346788898888888877542210 22346678899999999999999999843 222 333332
Q ss_pred HHHHHHHHHhhCCCCCcccHHHHHHHHHHHhccCeEEEEEeCCC
Q 038751 244 RIAKAIIEGLEGSLPNLRELNSLLEYIHTSIKEKKFFLILDDVW 287 (915)
Q Consensus 244 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw 287 (915)
-+|+....+ ...+.+.+.+.+.....++++++|++.
T Consensus 257 ---peivSGvSG-----ESEkkiRelF~~A~~~aPcivFiDeID 292 (802)
T KOG0733|consen 257 ---PEIVSGVSG-----ESEKKIRELFDQAKSNAPCIVFIDEID 292 (802)
T ss_pred ---hhhhcccCc-----ccHHHHHHHHHHHhccCCeEEEeeccc
Confidence 123333322 223445555556667789999999984
No 274
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.91 E-value=0.076 Score=54.85 Aligned_cols=79 Identities=16% Similarity=0.317 Sum_probs=46.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHhccccc--ccCCCeEEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHhc
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYNDKDV--IENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLRELNSLLEYIHTSIK 275 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~--~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 275 (915)
-++|.++|++|.|||+|++..++.-.+ .+.+....-+-++.. .++...... ...-+..+.+.+.+.++
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh----sLFSKWFsE------SgKlV~kmF~kI~ELv~ 246 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH----SLFSKWFSE------SGKLVAKMFQKIQELVE 246 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh----HHHHHHHhh------hhhHHHHHHHHHHHHHh
Confidence 589999999999999999999986433 344544444444321 222221111 11234455666666665
Q ss_pred cCe--EEEEEeCC
Q 038751 276 EKK--FFLILDDV 286 (915)
Q Consensus 276 ~k~--~LlVlDdv 286 (915)
++. +.+.+|.|
T Consensus 247 d~~~lVfvLIDEV 259 (423)
T KOG0744|consen 247 DRGNLVFVLIDEV 259 (423)
T ss_pred CCCcEEEEEeHHH
Confidence 554 34446888
No 275
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.87 E-value=0.054 Score=52.85 Aligned_cols=103 Identities=17% Similarity=0.053 Sum_probs=56.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEE------eCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHH
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVC------VSDPFDEFRIAKAIIEGLEGSLPNLRELNSLLEYIH 271 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~------vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 271 (915)
-.+++|+|..|.|||||++.+..-.. .....+++. +.+... .+..+...-.+.
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~q~~~------------------LSgGq~qrv~la 83 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQLI---PNGDNDEWDGITPVYKPQYID------------------LSGGELQRVAIA 83 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCCC---CCCcEEEECCEEEEEEcccCC------------------CCHHHHHHHHHH
Confidence 35899999999999999999887321 222223221 111111 122223333455
Q ss_pred HHhccCeEEEEEeCCCC-CCccChhhhHHhhhcC-CC-CceEEEEcCchHHHh
Q 038751 272 TSIKEKKFFLILDDVWP-DDYSKWEPFHNCLMNG-LC-GSRILVTTRKETVAR 321 (915)
Q Consensus 272 ~~l~~k~~LlVlDdvw~-~~~~~~~~l~~~l~~~-~~-gs~iivTtR~~~v~~ 321 (915)
+.+..++-++++|+.-. -+......+...+... .. +..||++|.+.....
T Consensus 84 ral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~ 136 (177)
T cd03222 84 AALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLD 136 (177)
T ss_pred HHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH
Confidence 66667788999998732 1222233344444332 22 256777777655444
No 276
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.86 E-value=0.025 Score=61.60 Aligned_cols=88 Identities=14% Similarity=0.130 Sum_probs=50.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCC-CCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHhcc
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSD-PFDEFRIAKAIIEGLEGSLPNLRELNSLLEYIHTSIKE 276 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 276 (915)
-+++.++|+.|+||||++.++......+.....+..++... .....+-++...+.++.......+..++...+.+ +.+
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~-l~~ 215 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAE-LRN 215 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHH-hcC
Confidence 46899999999999999988876322121123455555333 2344555666566665443322333334444433 334
Q ss_pred CeEEEEEeCCC
Q 038751 277 KKFFLILDDVW 287 (915)
Q Consensus 277 k~~LlVlDdvw 287 (915)
+ =++++|..-
T Consensus 216 ~-DlVLIDTaG 225 (374)
T PRK14722 216 K-HMVLIDTIG 225 (374)
T ss_pred C-CEEEEcCCC
Confidence 4 466699884
No 277
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.86 E-value=0.018 Score=57.60 Aligned_cols=111 Identities=15% Similarity=0.233 Sum_probs=57.7
Q ss_pred EEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHH-HHHHHHHHHhhCCCCCcccHHHHHHHHHHHhccC
Q 038751 199 QIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEF-RIAKAIIEGLEGSLPNLRELNSLLEYIHTSIKEK 277 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~-~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 277 (915)
++|.|+|+.|+||||++..+... ...+....+++ +.++.... .-...++.+-. -..+.....+.++..+...
T Consensus 2 GlilI~GptGSGKTTll~~ll~~--~~~~~~~~i~t-~e~~~E~~~~~~~~~i~q~~----vg~~~~~~~~~i~~aLr~~ 74 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDY--INKNKTHHILT-IEDPIEFVHESKRSLINQRE----VGLDTLSFENALKAALRQD 74 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH--hhhcCCcEEEE-EcCCccccccCccceeeecc----cCCCccCHHHHHHHHhcCC
Confidence 47899999999999999887663 22233334443 22221100 00001111100 0111233455677777667
Q ss_pred eEEEEEeCCCCCCccChhhhHHhhhcCCCCceEEEEcCchHHHh
Q 038751 278 KFFLILDDVWPDDYSKWEPFHNCLMNGLCGSRILVTTRKETVAR 321 (915)
Q Consensus 278 ~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~ 321 (915)
+=.+++|++- +.+.+... +.....|-.++.|+-..++..
T Consensus 75 pd~ii~gEir--d~e~~~~~---l~~a~~G~~v~~t~Ha~~~~~ 113 (198)
T cd01131 75 PDVILVGEMR--DLETIRLA---LTAAETGHLVMSTLHTNSAAK 113 (198)
T ss_pred cCEEEEcCCC--CHHHHHHH---HHHHHcCCEEEEEecCCcHHH
Confidence 7799999994 33333332 222234556777766554443
No 278
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.86 E-value=0.023 Score=60.57 Aligned_cols=83 Identities=20% Similarity=0.219 Sum_probs=53.5
Q ss_pred ceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhhCCC-----CCcccHHHHHHHHH
Q 038751 197 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSL-----PNLRELNSLLEYIH 271 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l~ 271 (915)
.-+++-|+|++|+||||||.++... ....-..++|+...+.++.. .+++++.+. ......++....+.
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~--~~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~~ 126 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIAE 126 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 4579999999999999999877663 22333567899887766653 234443321 11233455555555
Q ss_pred HHhc-cCeEEEEEeCC
Q 038751 272 TSIK-EKKFFLILDDV 286 (915)
Q Consensus 272 ~~l~-~k~~LlVlDdv 286 (915)
..++ +..-+||+|-+
T Consensus 127 ~li~~~~~~lIVIDSv 142 (321)
T TIGR02012 127 TLVRSGAVDIIVVDSV 142 (321)
T ss_pred HHhhccCCcEEEEcch
Confidence 5553 45669999987
No 279
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=95.85 E-value=0.062 Score=61.57 Aligned_cols=60 Identities=18% Similarity=0.281 Sum_probs=43.7
Q ss_pred CccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEE
Q 038751 171 SDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVC 235 (915)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 235 (915)
.+++--.+-++++..||..... +....+++.+.|++|+||||.++.++++ -.|+.+-|.+
T Consensus 19 ~eLavhkkKv~eV~~wl~~~~~-~~~~~~iLlLtGP~G~GKtttv~~La~e----lg~~v~Ew~n 78 (519)
T PF03215_consen 19 DELAVHKKKVEEVRSWLEEMFS-GSSPKRILLLTGPSGCGKTTTVKVLAKE----LGFEVQEWIN 78 (519)
T ss_pred HHhhccHHHHHHHHHHHHHHhc-cCCCcceEEEECCCCCCHHHHHHHHHHH----hCCeeEEecC
Confidence 3455556678888888865332 2334579999999999999999999884 2466777864
No 280
>PRK06762 hypothetical protein; Provisional
Probab=95.84 E-value=0.11 Score=50.41 Aligned_cols=23 Identities=35% Similarity=0.469 Sum_probs=21.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
..+|.|+|++|+||||+|+.+.+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~ 24 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQE 24 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999887
No 281
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.82 E-value=0.094 Score=52.60 Aligned_cols=61 Identities=13% Similarity=0.091 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhccCeEEEEEeCCC-CCCccChhhhHHhhhcC--CCCceEEEEcCchHHHhhhc
Q 038751 264 NSLLEYIHTSIKEKKFFLILDDVW-PDDYSKWEPFHNCLMNG--LCGSRILVTTRKETVARMME 324 (915)
Q Consensus 264 ~~~~~~l~~~l~~k~~LlVlDdvw-~~~~~~~~~l~~~l~~~--~~gs~iivTtR~~~v~~~~~ 324 (915)
++-.-.+.+.+-..+-+|+.|+-- +-|...=+.+...+... ..|..||+.|-++.+|..+.
T Consensus 147 qqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~d 210 (226)
T COG1136 147 QQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYAD 210 (226)
T ss_pred HHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCC
Confidence 344446778888888899999751 11222333455555543 45888999999999998653
No 282
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.81 E-value=0.14 Score=60.12 Aligned_cols=184 Identities=17% Similarity=0.143 Sum_probs=102.1
Q ss_pred cCccccchH---HHHHHHHHHhccccc---ccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHH
Q 038751 170 VSDVRGRDE---EKNILKRKLLCESNE---ERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEF 243 (915)
Q Consensus 170 ~~~~~Gr~~---~~~~l~~~L~~~~~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 243 (915)
-.++.|-++ |+.++++.|..+... +..-++=+.++|++|+|||-||++++.... +-|++++..
T Consensus 310 FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAg-------VPF~svSGS---- 378 (774)
T KOG0731|consen 310 FKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG-------VPFFSVSGS---- 378 (774)
T ss_pred cccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccC-------CceeeechH----
Confidence 346788765 556666667655432 233467788999999999999999998543 334555531
Q ss_pred HHHHHHHHHhhCCCCCcccHHHHHHHHHHHhccCeEEEEEeCCCCCC---------------ccChhhhHHhhhcCCC--
Q 038751 244 RIAKAIIEGLEGSLPNLRELNSLLEYIHTSIKEKKFFLILDDVWPDD---------------YSKWEPFHNCLMNGLC-- 306 (915)
Q Consensus 244 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~---------------~~~~~~l~~~l~~~~~-- 306 (915)
+.++.+.+. +.. .+.+.+...=...+..+.+|++.... ...++++..-+.....
T Consensus 379 ----EFvE~~~g~--~as---rvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~ 449 (774)
T KOG0731|consen 379 ----EFVEMFVGV--GAS---RVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSK 449 (774)
T ss_pred ----HHHHHhccc--chH---HHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCC
Confidence 222222221 111 11122222224568889989873211 0112222222222222
Q ss_pred CceEEEEcCchHHHhh--h---cCcCeEeCCCCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCCCchHH
Q 038751 307 GSRILVTTRKETVARM--M---ESTDVISIKELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKGLPLAA 377 (915)
Q Consensus 307 gs~iivTtR~~~v~~~--~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~PLai 377 (915)
+.-++-+|...++... + .-...+.++.-+...-.++|.-++-.-... .+..++++ |+...-|.+=|.
T Consensus 450 ~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~---~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 450 GVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD---DEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred cEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC---cchhhHHH-HHhcCCCCcHHH
Confidence 2233334554443321 1 225678888888889999998887443221 34456666 888888887653
No 283
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.81 E-value=0.042 Score=53.04 Aligned_cols=115 Identities=16% Similarity=0.130 Sum_probs=62.2
Q ss_pred EEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCC--CCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHhcc
Q 038751 199 QIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSD--PFDEFRIAKAIIEGLEGSLPNLRELNSLLEYIHTSIKE 276 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~--~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 276 (915)
.+++|+|..|.|||||.+.+..-. ......+++.-.. ..+..+..+ +.++- ..+.+..+...-.+.+.+-.
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~---~~~~G~v~~~g~~~~~~~~~~~~~---~~i~~-~~qLS~G~~qrl~laral~~ 99 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLY---KPDSGEILVDGKEVSFASPRDARR---AGIAM-VYQLSVGERQMVEIARALAR 99 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEECCcCCHHHHHh---cCeEE-EEecCHHHHHHHHHHHHHhc
Confidence 579999999999999999998732 2334444442211 111111111 11111 01122223333445566667
Q ss_pred CeEEEEEeCCCC-CCccChhhhHHhhhcC-CCCceEEEEcCchHHH
Q 038751 277 KKFFLILDDVWP-DDYSKWEPFHNCLMNG-LCGSRILVTTRKETVA 320 (915)
Q Consensus 277 k~~LlVlDdvw~-~~~~~~~~l~~~l~~~-~~gs~iivTtR~~~v~ 320 (915)
++-++++|+.-. -|......+...+... ..|..||++|.+....
T Consensus 100 ~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~ 145 (163)
T cd03216 100 NARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEV 145 (163)
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 788999998732 2233344455555432 3466788888876543
No 284
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.78 E-value=0.027 Score=60.11 Aligned_cols=83 Identities=20% Similarity=0.211 Sum_probs=53.6
Q ss_pred ceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhhCCC-----CCcccHHHHHHHHH
Q 038751 197 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSL-----PNLRELNSLLEYIH 271 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l~ 271 (915)
.-+++-|+|++|+||||||.+++.. ....-..++||+....++.. .+++++.+. ....+.++....+.
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~--~~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~~ 126 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAE--AQKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIAD 126 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHHH
Confidence 4578999999999999999887653 22334568899887776653 233343221 11223455555555
Q ss_pred HHhc-cCeEEEEEeCC
Q 038751 272 TSIK-EKKFFLILDDV 286 (915)
Q Consensus 272 ~~l~-~k~~LlVlDdv 286 (915)
..++ +..-+||+|-|
T Consensus 127 ~li~s~~~~lIVIDSv 142 (325)
T cd00983 127 SLVRSGAVDLIVVDSV 142 (325)
T ss_pred HHHhccCCCEEEEcch
Confidence 5553 45668999987
No 285
>PTZ00494 tuzin-like protein; Provisional
Probab=95.78 E-value=0.96 Score=49.38 Aligned_cols=168 Identities=14% Similarity=0.147 Sum_probs=104.6
Q ss_pred ccccCccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHH
Q 038751 167 LINVSDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIA 246 (915)
Q Consensus 167 ~~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~ 246 (915)
......++.|+.|-..+.+.|.+.+ ..+++++.+.|.-|+||++|.+.....+.+ ..++|.+... ++-+
T Consensus 367 ~a~~~~~V~R~~eE~~vRqvL~qld---~aHPRIvV~TG~~GcGKSslcRsAvrkE~~-----paV~VDVRg~---EDtL 435 (664)
T PTZ00494 367 AAAEAFEVRREDEEALVRSVLTQMA---PSHPRIVALAGGSGGGRCVPCRRAVRVEGV-----ALVHVDVGGT---EDTL 435 (664)
T ss_pred ccccccccchhhHHHHHHHHHhhcc---CCCCcEEEEecCCCCCchHHHHHHHHHcCC-----CeEEEEecCC---cchH
Confidence 3456678999988888877776654 347899999999999999999888764322 3567777653 4568
Q ss_pred HHHHHHhhCCCCCc--ccHHHHHHHHHH---HhccCeEEEEEeCCCCCC-ccChhhhHHhhhcCCCCceEEEEcCchHHH
Q 038751 247 KAIIEGLEGSLPNL--RELNSLLEYIHT---SIKEKKFFLILDDVWPDD-YSKWEPFHNCLMNGLCGSRILVTTRKETVA 320 (915)
Q Consensus 247 ~~i~~~l~~~~~~~--~~~~~~~~~l~~---~l~~k~~LlVlDdvw~~~-~~~~~~l~~~l~~~~~gs~iivTtR~~~v~ 320 (915)
+.|++.++.+..+. +-++-+.+.... ...++.-+||+-=-.-.+ ...+++. ..|.....-++|++---.+.+.
T Consensus 436 rsVVKALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~-vaLacDrRlCHvv~EVplESLT 514 (664)
T PTZ00494 436 RSVVRALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEV-VSLVSDCQACHIVLAVPMKALT 514 (664)
T ss_pred HHHHHHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHH-HHHHccchhheeeeechHhhhc
Confidence 88999998765442 223333333332 234565666664220000 0112221 1244445567787755544432
Q ss_pred hh---hcCcCeEeCCCCCHHHHHHHHHHh
Q 038751 321 RM---MESTDVISIKELSEQECWSLFKRF 346 (915)
Q Consensus 321 ~~---~~~~~~~~l~~L~~~~~~~lf~~~ 346 (915)
.. +.....|.+.+++.++|.++-.+.
T Consensus 515 ~~n~~LPRLDFy~VPnFSr~QAf~YtqH~ 543 (664)
T PTZ00494 515 PLNVSSRRLDFYCIPPFSRRQAFAYAEHT 543 (664)
T ss_pred hhhccCccceeEecCCcCHHHHHHHHhcc
Confidence 22 122468899999999999887664
No 286
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.77 E-value=0.035 Score=59.98 Aligned_cols=58 Identities=22% Similarity=0.141 Sum_probs=41.7
Q ss_pred ceEEEEEEecCCCcHHHHHHHHhcccccc----cCCCeEEEEEeCCCCCHHHHHHHHHHHhhC
Q 038751 197 AVQIISLVGMGGIGKTTLAQFAYNDKDVI----ENFDKRIWVCVSDPFDEFRIAKAIIEGLEG 255 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 255 (915)
.-+++-|+|.+|+|||+|+..++-..... +.-..++||+....|.+.++.+ +++.++.
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~ 186 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGM 186 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCC
Confidence 45889999999999999997775322221 1124689999999999888655 5555543
No 287
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.77 E-value=0.011 Score=59.02 Aligned_cols=23 Identities=35% Similarity=0.421 Sum_probs=20.2
Q ss_pred EEEEEEecCCCcHHHHHHHHhcc
Q 038751 199 QIISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
+++.|.|.+|.||||+++.+...
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~ 41 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEA 41 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHH
T ss_pred eEEEEEECCCCCHHHHHHHHHHH
Confidence 67889999999999999888763
No 288
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.77 E-value=0.013 Score=56.86 Aligned_cols=80 Identities=18% Similarity=0.228 Sum_probs=43.2
Q ss_pred EEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhhCCCCCc---ccHHHHHHHHHHHhcc
Q 038751 200 IISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNL---RELNSLLEYIHTSIKE 276 (915)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~l~~~l~~ 276 (915)
++.|.|.+|+||||+|..+.... .. ..+++.....++ .+..+.|..........- .....+...+.....+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~--~~---~~~~iat~~~~~-~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~~ 76 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS--GL---QVLYIATAQPFD-DEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAAP 76 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc--CC---CcEeCcCCCCCh-HHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcCC
Confidence 58999999999999999887631 11 234444444333 345555544433221111 1112244444443332
Q ss_pred CeEEEEEeCC
Q 038751 277 KKFFLILDDV 286 (915)
Q Consensus 277 k~~LlVlDdv 286 (915)
.-++++|.+
T Consensus 77 -~~~VlID~L 85 (170)
T PRK05800 77 -GRCVLVDCL 85 (170)
T ss_pred -CCEEEehhH
Confidence 337888986
No 289
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.76 E-value=0.045 Score=56.50 Aligned_cols=86 Identities=23% Similarity=0.208 Sum_probs=53.3
Q ss_pred ceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhhCCC-------------------
Q 038751 197 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSL------------------- 257 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~------------------- 257 (915)
.-.++.|+|.+|+|||+||.++... ..+ +=..++|++..+. ..++.+.+ ++++-..
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~-~~~-~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~~ 98 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYG-ALK-QGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEGF 98 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHH-HHh-CCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEecccccc
Confidence 4578999999999999999887542 122 2346788888653 44555543 2232110
Q ss_pred -CCcccHHHHHHHHHHHhcc-CeEEEEEeCCC
Q 038751 258 -PNLRELNSLLEYIHTSIKE-KKFFLILDDVW 287 (915)
Q Consensus 258 -~~~~~~~~~~~~l~~~l~~-k~~LlVlDdvw 287 (915)
......+.+...+...+.. +.-++|+|.+-
T Consensus 99 ~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 99 EWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred ccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 0112235566666666653 55689999873
No 290
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=95.73 E-value=0.051 Score=63.66 Aligned_cols=134 Identities=13% Similarity=0.073 Sum_probs=73.5
Q ss_pred ccCccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccc-cccCCCeEEEEEeCCCCCHHHHHH
Q 038751 169 NVSDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKD-VIENFDKRIWVCVSDPFDEFRIAK 247 (915)
Q Consensus 169 ~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~F~~~~wv~vs~~~~~~~~~~ 247 (915)
....++|....++++.+.+..... ...-|.|+|..|+|||++|+.+++... ..+ ..+.|+++.-. ...+.
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a~----~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~---pfv~i~c~~~~--~~~~~ 264 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVAR----SNSTVLLRGESGTGKELIAKAIHYLSPRAKR---PFVKVNCAALS--ETLLE 264 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHhC----cCCCEEEECCCCccHHHHHHHHHHhCCCCCC---CeEEeecCCCC--HHHHH
Confidence 345799999999999988865432 234578999999999999999987421 111 22334443321 12222
Q ss_pred HHHHHhhCCCCCc-c-cHHHHHHHHHHHhccCeEEEEEeCCCCCCccChhhhHHhhhcCC-----------CCceEEEEc
Q 038751 248 AIIEGLEGSLPNL-R-ELNSLLEYIHTSIKEKKFFLILDDVWPDDYSKWEPFHNCLMNGL-----------CGSRILVTT 314 (915)
Q Consensus 248 ~i~~~l~~~~~~~-~-~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iivTt 314 (915)
. .+.+...+. . ........+. ....=.|+||++..-.......+...+..+. ...+||.||
T Consensus 265 ~---~lfg~~~~~~~~~~~~~~g~~~---~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s 338 (534)
T TIGR01817 265 S---ELFGHEKGAFTGAIAQRKGRFE---LADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAAT 338 (534)
T ss_pred H---HHcCCCCCccCCCCcCCCCccc---ccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeC
Confidence 2 121211110 0 0000000000 1223468899996655556666776665432 124888887
Q ss_pred Cch
Q 038751 315 RKE 317 (915)
Q Consensus 315 R~~ 317 (915)
...
T Consensus 339 ~~~ 341 (534)
T TIGR01817 339 NRD 341 (534)
T ss_pred CCC
Confidence 643
No 291
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.72 E-value=0.047 Score=56.83 Aligned_cols=90 Identities=21% Similarity=0.154 Sum_probs=58.2
Q ss_pred cCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhhC----CCCCcccHHHHHHHH
Q 038751 195 RNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEG----SLPNLRELNSLLEYI 270 (915)
Q Consensus 195 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~----~~~~~~~~~~~~~~l 270 (915)
=+.-+++=|+|+.|.||||+|.+++-. .+..-..++|++..+.+++..+..--...+.. .........++.+.+
T Consensus 57 l~~g~ItEiyG~~gsGKT~lal~~~~~--aq~~g~~a~fIDtE~~l~p~r~~~l~~~~~d~l~v~~~~~~e~q~~i~~~~ 134 (279)
T COG0468 57 LPRGRITEIYGPESSGKTTLALQLVAN--AQKPGGKAAFIDTEHALDPERAKQLGVDLLDNLLVSQPDTGEQQLEIAEKL 134 (279)
T ss_pred cccceEEEEecCCCcchhhHHHHHHHH--hhcCCCeEEEEeCCCCCCHHHHHHHHHhhhcceeEecCCCHHHHHHHHHHH
Confidence 346689999999999999999776663 33334478999999999987764433321211 112222233444445
Q ss_pred HHHhccCeEEEEEeCC
Q 038751 271 HTSIKEKKFFLILDDV 286 (915)
Q Consensus 271 ~~~l~~k~~LlVlDdv 286 (915)
.+....+--|+|+|-+
T Consensus 135 ~~~~~~~i~LvVVDSv 150 (279)
T COG0468 135 ARSGAEKIDLLVVDSV 150 (279)
T ss_pred HHhccCCCCEEEEecC
Confidence 4554445679999987
No 292
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.71 E-value=0.05 Score=53.17 Aligned_cols=116 Identities=15% Similarity=0.158 Sum_probs=59.5
Q ss_pred EEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCC--CCCHHHHHHHHHHHhhC--CCCC----------cccHH
Q 038751 199 QIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSD--PFDEFRIAKAIIEGLEG--SLPN----------LRELN 264 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~--~~~~~~~~~~i~~~l~~--~~~~----------~~~~~ 264 (915)
.+++|+|..|.|||||.+.+..-. ......+++.-.. ........ ..+.- +.+. .+..+
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~~----~~i~~~~q~~~~~~~tv~~~lLS~G~ 101 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGLL---RPTSGRVRLDGADISQWDPNELG----DHVGYLPQDDELFSGSIAENILSGGQ 101 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcc---CCCCCeEEECCEEcccCCHHHHH----hheEEECCCCccccCcHHHHCcCHHH
Confidence 589999999999999999998732 1222333321110 01111111 11110 0000 11122
Q ss_pred HHHHHHHHHhccCeEEEEEeCCCC-CCccChhhhHHhhhcC-CCCceEEEEcCchHHHh
Q 038751 265 SLLEYIHTSIKEKKFFLILDDVWP-DDYSKWEPFHNCLMNG-LCGSRILVTTRKETVAR 321 (915)
Q Consensus 265 ~~~~~l~~~l~~k~~LlVlDdvw~-~~~~~~~~l~~~l~~~-~~gs~iivTtR~~~v~~ 321 (915)
...-.+.+.+-.++-++++|+... -|......+...+... ..|..||++|.+.....
T Consensus 102 ~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 160 (173)
T cd03246 102 RQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA 160 (173)
T ss_pred HHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 223345566667777999998743 1222333344444432 24667888888776554
No 293
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.69 E-value=0.0054 Score=62.16 Aligned_cols=171 Identities=20% Similarity=0.210 Sum_probs=95.8
Q ss_pred HhHhhccCCCCCCceEEEEecCCCCchhhhhhhhhHHHHhhHHHHHhhc-CCCCCcceEEEeeeCC--CCCCCcccCccC
Q 038751 678 AKNAHLEKKKNLIDLILIFNEREESDDEKASEEMNEEKEAKHEAVCEAL-RPPPDIKSLEIMVFKG--RTPSNWIGSLNK 754 (915)
Q Consensus 678 ~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~--~~~p~~~~~l~~ 754 (915)
.....+.++++|+.|+|++|+... .+.++ .|..+|+.|.+.|... ...-+.+..+|.
T Consensus 88 eI~~ile~lP~l~~LNls~N~L~s--------------------~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 88 EIGAILEQLPALTTLNLSCNSLSS--------------------DIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred HHHHHHhcCccceEeeccCCcCCC--------------------ccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 345568899999999999986432 23445 3778999999876542 122334457888
Q ss_pred ccEEEEcCcCC----C-----CCCC----CCCCCCCcceeeccccccceEeCccccCCccccccccccc-----CCCccc
Q 038751 755 LKMLTLNSFVK----C-----EIMP----PLGKLPSLEILRIWHMRSVKRVGDEFLGMEISDHIHIHGT-----SSSSSV 816 (915)
Q Consensus 755 L~~L~L~~~~~----~-----~~l~----~l~~Lp~L~~L~L~~~~~l~~~~~~~~~~~~l~~l~l~~~-----~~~~~~ 816 (915)
++.|+++.|.. . +... .+..+|++..+.+.-|.-.+.+| ++..+-+..+ ....+.
T Consensus 148 vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fp-------nv~sv~v~e~PlK~~s~ek~s 220 (418)
T KOG2982|consen 148 VTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFP-------NVNSVFVCEGPLKTESSEKGS 220 (418)
T ss_pred hhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcc-------cchheeeecCcccchhhcccC
Confidence 88888887621 1 1111 12334444443333332111111 1111222222 111123
Q ss_pred ccCcccceeeecCcccccccccCCCCcccCcccceeecccCccccCCCcC------CCCCCCcCeEe
Q 038751 817 IAFPKLQKLELTGMDELEEWDFGNDDITIMPHIKSLYITYCEKLKSLPEL------LLRSTTLESLT 877 (915)
Q Consensus 817 ~~f~~L~~L~l~~~~~l~~~~~~~~~~~~lp~L~~L~l~~c~~L~~lp~~------l~~l~~L~~L~ 877 (915)
..||.+-.|.+... ++.+|.-.. .+..||+|..|.+.+.|.+..+-.+ +..+++++.|+
T Consensus 221 e~~p~~~~LnL~~~-~idswasvD-~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN 285 (418)
T KOG2982|consen 221 EPFPSLSCLNLGAN-NIDSWASVD-ALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLN 285 (418)
T ss_pred CCCCcchhhhhccc-ccccHHHHH-HHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEec
Confidence 35777777777653 566665321 1458999999999999987766422 34455555554
No 294
>PRK09354 recA recombinase A; Provisional
Probab=95.68 E-value=0.032 Score=60.01 Aligned_cols=83 Identities=19% Similarity=0.221 Sum_probs=54.7
Q ss_pred ceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhhCCC-----CCcccHHHHHHHHH
Q 038751 197 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSL-----PNLRELNSLLEYIH 271 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l~ 271 (915)
.-+++-|+|++|+||||||.+++... ...-..++||.....++.. .+++++.+. ......++....+.
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~--~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~~ 131 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEA--QKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIAD 131 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 45799999999999999998776532 2334568899988877753 344444321 11223555555555
Q ss_pred HHhc-cCeEEEEEeCC
Q 038751 272 TSIK-EKKFFLILDDV 286 (915)
Q Consensus 272 ~~l~-~k~~LlVlDdv 286 (915)
..++ +..-+||+|-|
T Consensus 132 ~li~s~~~~lIVIDSv 147 (349)
T PRK09354 132 TLVRSGAVDLIVVDSV 147 (349)
T ss_pred HHhhcCCCCEEEEeCh
Confidence 5553 45668999987
No 295
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=95.67 E-value=0.00029 Score=79.19 Aligned_cols=87 Identities=22% Similarity=0.111 Sum_probs=57.1
Q ss_pred HhhccCCCCCCceEEEEecCCCCchhhhhhhhhHHHHhhHHHHHhhcCCCCCcceEEEeeeCCCCCCCcccCccCccEEE
Q 038751 680 NAHLEKKKNLIDLILIFNEREESDDEKASEEMNEEKEAKHEAVCEALRPPPDIKSLEIMVFKGRTPSNWIGSLNKLKMLT 759 (915)
Q Consensus 680 ~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~ 759 (915)
...+..+++|++|+|++|.... ++..-..-..|..|.++||....+-. +.+|.+|+.|+
T Consensus 202 v~~Lr~l~~LkhLDlsyN~L~~--------------------vp~l~~~gc~L~~L~lrnN~l~tL~g-ie~LksL~~LD 260 (1096)
T KOG1859|consen 202 VDNLRRLPKLKHLDLSYNCLRH--------------------VPQLSMVGCKLQLLNLRNNALTTLRG-IENLKSLYGLD 260 (1096)
T ss_pred hHHHHhcccccccccccchhcc--------------------ccccchhhhhheeeeecccHHHhhhh-HHhhhhhhccc
Confidence 3467778888888888874321 11111112347888888876655543 56888888888
Q ss_pred EcCcCCC--CCCCCCCCCCCcceeeccccc
Q 038751 760 LNSFVKC--EIMPPLGKLPSLEILRIWHMR 787 (915)
Q Consensus 760 L~~~~~~--~~l~~l~~Lp~L~~L~L~~~~ 787 (915)
+++|... ..+.+++.|..|..|.|.||+
T Consensus 261 lsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 261 LSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred hhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 8876433 256667788888888888876
No 296
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.66 E-value=0.058 Score=58.02 Aligned_cols=57 Identities=21% Similarity=0.177 Sum_probs=39.6
Q ss_pred ceEEEEEEecCCCcHHHHHHHHhcccccc---c-CCCeEEEEEeCCCCCHHHHHHHHHHHhh
Q 038751 197 AVQIISLVGMGGIGKTTLAQFAYNDKDVI---E-NFDKRIWVCVSDPFDEFRIAKAIIEGLE 254 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~-~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 254 (915)
.-.++.|+|.+|+|||||+..++...... + .-..++|++....+...++ .++.+.++
T Consensus 95 ~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~ 155 (316)
T TIGR02239 95 TGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYG 155 (316)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcC
Confidence 56899999999999999998876532221 1 1135789999888887763 44455443
No 297
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.62 E-value=0.079 Score=59.45 Aligned_cols=88 Identities=14% Similarity=0.102 Sum_probs=46.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCC-CHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHhcc
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPF-DEFRIAKAIIEGLEGSLPNLRELNSLLEYIHTSIKE 276 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 276 (915)
.+++.++|++|+||||++..+.........-..++.|+....- ...+.++...+.++.......+..++...+.+. .
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~-~- 298 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQL-R- 298 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHh-C-
Confidence 4699999999999999987765532211222345566653321 112223333333333222223334455555443 2
Q ss_pred CeEEEEEeCCC
Q 038751 277 KKFFLILDDVW 287 (915)
Q Consensus 277 k~~LlVlDdvw 287 (915)
..=+|++|..-
T Consensus 299 ~~DlVlIDt~G 309 (424)
T PRK05703 299 DCDVILIDTAG 309 (424)
T ss_pred CCCEEEEeCCC
Confidence 34578889764
No 298
>PHA02244 ATPase-like protein
Probab=95.61 E-value=0.055 Score=58.25 Aligned_cols=21 Identities=29% Similarity=0.365 Sum_probs=19.1
Q ss_pred EEEEecCCCcHHHHHHHHhcc
Q 038751 201 ISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 201 i~I~G~gGiGKTtLa~~v~~~ 221 (915)
|.|+|++|+|||+||+.++..
T Consensus 122 VLL~GppGtGKTtLA~aLA~~ 142 (383)
T PHA02244 122 VFLKGGAGSGKNHIAEQIAEA 142 (383)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999999873
No 299
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.60 E-value=0.011 Score=54.77 Aligned_cols=24 Identities=33% Similarity=0.368 Sum_probs=21.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcc
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
.--|.|.|++|+||||+++++.+.
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~ 28 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEK 28 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHH
Confidence 346899999999999999999874
No 300
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=95.59 E-value=0.034 Score=60.39 Aligned_cols=45 Identities=13% Similarity=0.107 Sum_probs=36.7
Q ss_pred ccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhc
Q 038751 172 DVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 172 ~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
.++|+...++++.+.+..... ...-|.|+|..|+||+++|+.+..
T Consensus 7 ~liG~S~~~~~~~~~i~~~a~----~~~pVlI~GE~GtGK~~lA~~iH~ 51 (326)
T PRK11608 7 NLLGEANSFLEVLEQVSRLAP----LDKPVLIIGERGTGKELIASRLHY 51 (326)
T ss_pred ccEECCHHHHHHHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHHH
Confidence 589999999999888866543 234578999999999999999876
No 301
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=95.58 E-value=0.00059 Score=76.88 Aligned_cols=84 Identities=21% Similarity=0.144 Sum_probs=60.6
Q ss_pred hhccCCCCCCceEEEEecCCCCchhhhhhhhhHHHHhhHHHHHhhcCCCCCcceEEEeeeCCCCCCCccc-CccCccEEE
Q 038751 681 AHLEKKKNLIDLILIFNEREESDDEKASEEMNEEKEAKHEAVCEALRPPPDIKSLEIMVFKGRTPSNWIG-SLNKLKMLT 759 (915)
Q Consensus 681 ~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~-~l~~L~~L~ 759 (915)
..+.-++.|+.|+|+.|... ....+..++.|++|+|+.|....+|..-. .++ |..|.
T Consensus 181 ~SLqll~ale~LnLshNk~~---------------------~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~ 238 (1096)
T KOG1859|consen 181 ESLQLLPALESLNLSHNKFT---------------------KVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLN 238 (1096)
T ss_pred HHHHHHHHhhhhccchhhhh---------------------hhHHHHhcccccccccccchhccccccchhhhh-heeee
Confidence 44556678888999887421 12366778889999998888777775322 444 88898
Q ss_pred EcCcCCCCCCCCCCCCCCcceeeccccc
Q 038751 760 LNSFVKCEIMPPLGKLPSLEILRIWHMR 787 (915)
Q Consensus 760 L~~~~~~~~l~~l~~Lp~L~~L~L~~~~ 787 (915)
|.|| -++.+-.+.+|.+|+.|++++|-
T Consensus 239 lrnN-~l~tL~gie~LksL~~LDlsyNl 265 (1096)
T KOG1859|consen 239 LRNN-ALTTLRGIENLKSLYGLDLSYNL 265 (1096)
T ss_pred eccc-HHHhhhhHHhhhhhhccchhHhh
Confidence 8887 45566667788889999998764
No 302
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=95.58 E-value=0.44 Score=50.65 Aligned_cols=152 Identities=14% Similarity=0.075 Sum_probs=88.9
Q ss_pred ceEEEEEEecCCCcHHHHHHHHhccc---c---cc--cCCCeEEEEEe-CCCCCHHHHHHHHHHHhhCCCCCcccHHHHH
Q 038751 197 AVQIISLVGMGGIGKTTLAQFAYNDK---D---VI--ENFDKRIWVCV-SDPFDEFRIAKAIIEGLEGSLPNLRELNSLL 267 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~---~---~~--~~F~~~~wv~v-s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 267 (915)
-.++..++|..|.||+++|..+.+.. . +. .|=+...++.. +.... .+++.
T Consensus 17 l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~---------------------vd~Ir 75 (299)
T PRK07132 17 ISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLS---------------------KSEFL 75 (299)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCC---------------------HHHHH
Confidence 35777899999999999998776531 0 01 11112222221 11111 22222
Q ss_pred HHHHHH----h-ccCeEEEEEeCCCCCCccChhhhHHhhhcCCCCceEEEEcCch-HHHhh-hcCcCeEeCCCCCHHHHH
Q 038751 268 EYIHTS----I-KEKKFFLILDDVWPDDYSKWEPFHNCLMNGLCGSRILVTTRKE-TVARM-MESTDVISIKELSEQECW 340 (915)
Q Consensus 268 ~~l~~~----l-~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~-~~~~~~~~l~~L~~~~~~ 340 (915)
+..... . .+.+-++|+||+........+.+...+.....++.+|++|.+. .+... ......+++.++++++..
T Consensus 76 ~l~~~~~~~~~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~ 155 (299)
T PRK07132 76 SAINKLYFSSFVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKIL 155 (299)
T ss_pred HHHHHhccCCcccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHH
Confidence 222221 0 1467788999986555556777888888877888887766543 33322 344678999999999998
Q ss_pred HHHHHhHcCCCCCCchhHHHHHHHHHHHhcCCCchHHHH
Q 038751 341 SLFKRFAFSGRSPTECEQLEEIGRKIVGKCKGLPLAAKT 379 (915)
Q Consensus 341 ~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~PLai~~ 379 (915)
..+.... . . ++.+..++...+|.--|+..
T Consensus 156 ~~l~~~~---~--~-----~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 156 AKLLSKN---K--E-----KEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred HHHHHcC---C--C-----hhHHHHHHHHcCCHHHHHHH
Confidence 8776641 1 1 12355566666763344444
No 303
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.58 E-value=0.081 Score=51.66 Aligned_cols=118 Identities=22% Similarity=0.121 Sum_probs=61.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhhC--CC----CC--------cccH
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEG--SL----PN--------LREL 263 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~--~~----~~--------~~~~ 263 (915)
-.+++|+|..|.|||||++.++... ......+++.-..-.+.. ..+...+.- +. .. ....
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G 99 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLL---KPDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLSGG 99 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcCHH
Confidence 3589999999999999999998742 122333333211000000 011111110 00 00 1111
Q ss_pred HHHHHHHHHHhccCeEEEEEeCCCC-CCccChhhhHHhhhcC-CCCceEEEEcCchHHHh
Q 038751 264 NSLLEYIHTSIKEKKFFLILDDVWP-DDYSKWEPFHNCLMNG-LCGSRILVTTRKETVAR 321 (915)
Q Consensus 264 ~~~~~~l~~~l~~k~~LlVlDdvw~-~~~~~~~~l~~~l~~~-~~gs~iivTtR~~~v~~ 321 (915)
+...-.+.+.+..++=++++|+.-. -|......+...+... ..|..||++|.+.....
T Consensus 100 ~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~ 159 (173)
T cd03230 100 MKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAE 159 (173)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH
Confidence 2222345666777888999998732 1222333444444432 23677888888776554
No 304
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.58 E-value=0.082 Score=57.27 Aligned_cols=56 Identities=23% Similarity=0.301 Sum_probs=39.8
Q ss_pred ceEEEEEEecCCCcHHHHHHHHhcccccccC----CCeEEEEEeCCCCCHHHHHHHHHHHh
Q 038751 197 AVQIISLVGMGGIGKTTLAQFAYNDKDVIEN----FDKRIWVCVSDPFDEFRIAKAIIEGL 253 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~~~~~i~~~l 253 (915)
.-.++-|+|++|+|||+++.+++-....... =..++||+....++..++.+ +++.+
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~ 160 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEAL 160 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHc
Confidence 4678999999999999999877653222111 13789999998888777654 34444
No 305
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.56 E-value=0.05 Score=61.33 Aligned_cols=89 Identities=17% Similarity=0.103 Sum_probs=46.6
Q ss_pred ceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCC-CCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHhc
Q 038751 197 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSD-PFDEFRIAKAIIEGLEGSLPNLRELNSLLEYIHTSIK 275 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 275 (915)
..++|+|+|.+|+||||++.++......+.....+..++... .....+.++...+.++.......+...+...+.+. .
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l-~ 427 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERL-R 427 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHh-c
Confidence 357999999999999999988765322121123344444322 11222333333333332222223334455444433 3
Q ss_pred cCeEEEEEeCCC
Q 038751 276 EKKFFLILDDVW 287 (915)
Q Consensus 276 ~k~~LlVlDdvw 287 (915)
..=+|++|..-
T Consensus 428 -~~DLVLIDTaG 438 (559)
T PRK12727 428 -DYKLVLIDTAG 438 (559)
T ss_pred -cCCEEEecCCC
Confidence 34588888874
No 306
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.51 E-value=0.059 Score=59.16 Aligned_cols=24 Identities=29% Similarity=0.289 Sum_probs=21.1
Q ss_pred ceEEEEEEecCCCcHHHHHHHHhc
Q 038751 197 AVQIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
...++.++|++|+||||++.+++.
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999988876
No 307
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.50 E-value=0.025 Score=56.01 Aligned_cols=78 Identities=21% Similarity=0.207 Sum_probs=43.8
Q ss_pred ceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHH-HHHHHHhhCCCCCcccHHHHHHHHHHHhc
Q 038751 197 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIA-KAIIEGLEGSLPNLRELNSLLEYIHTSIK 275 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~-~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 275 (915)
.+.+|+|.|.+|+||||+|+.++. ..+.++ .+-++...-+...+.. ..--....-..+..-+.+-+.+.|...++
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~--~~~~~~--~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L~~ 82 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSE--QLGVEK--VVVISLDDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKDLKQ 82 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHH--HhCcCc--ceEeeccccccchhhcCHhhcCCcCccChhhhcHHHHHHHHHHHHc
Confidence 568999999999999999999988 333331 1222221111110000 00000111123445667777788888877
Q ss_pred cCe
Q 038751 276 EKK 278 (915)
Q Consensus 276 ~k~ 278 (915)
+++
T Consensus 83 g~~ 85 (218)
T COG0572 83 GKP 85 (218)
T ss_pred CCc
Confidence 777
No 308
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=95.48 E-value=0.045 Score=59.73 Aligned_cols=113 Identities=16% Similarity=0.095 Sum_probs=68.7
Q ss_pred ccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHHH
Q 038751 172 DVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIE 251 (915)
Q Consensus 172 ~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 251 (915)
.++|+++....+...+... +-+.+.|.+|+|||+||+.+... .. -...+|.+.......+++....-
T Consensus 25 ~~~g~~~~~~~~l~a~~~~--------~~vll~G~PG~gKT~la~~lA~~--l~---~~~~~i~~t~~l~p~d~~G~~~~ 91 (329)
T COG0714 25 VVVGDEEVIELALLALLAG--------GHVLLEGPPGVGKTLLARALARA--LG---LPFVRIQCTPDLLPSDLLGTYAY 91 (329)
T ss_pred eeeccHHHHHHHHHHHHcC--------CCEEEECCCCccHHHHHHHHHHH--hC---CCeEEEecCCCCCHHHhcCchhH
Confidence 3888888888888777654 34789999999999999999873 22 23466777777777666544433
Q ss_pred HhhCCCCCcccHHHHHHHHHH-HhccCeEEEEEeCCCCCCccChhhhHHhhhc
Q 038751 252 GLEGSLPNLRELNSLLEYIHT-SIKEKKFFLILDDVWPDDYSKWEPFHNCLMN 303 (915)
Q Consensus 252 ~l~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~ 303 (915)
.......... ..... .....+.++++|.++...+.....+...+..
T Consensus 92 ~~~~~~~~~~------~~~~gpl~~~~~~ill~DEInra~p~~q~aLl~~l~e 138 (329)
T COG0714 92 AALLLEPGEF------RFVPGPLFAAVRVILLLDEINRAPPEVQNALLEALEE 138 (329)
T ss_pred hhhhccCCeE------EEecCCcccccceEEEEeccccCCHHHHHHHHHHHhC
Confidence 2211000000 00000 0011115889999987776666666665554
No 309
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.47 E-value=0.088 Score=57.95 Aligned_cols=90 Identities=14% Similarity=0.117 Sum_probs=51.6
Q ss_pred ceEEEEEEecCCCcHHHHHHHHhcccccc--cCCCeEEEEEeCCC-CCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHH
Q 038751 197 AVQIISLVGMGGIGKTTLAQFAYNDKDVI--ENFDKRIWVCVSDP-FDEFRIAKAIIEGLEGSLPNLRELNSLLEYIHTS 273 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 273 (915)
..++|.++|+.|+||||.+.+++...... .+=..++.+++... ......++...+.++.........+.+...+.+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 45799999999999999998777632221 11123445554432 1223335555555554333333445555555443
Q ss_pred hccCeEEEEEeCCCC
Q 038751 274 IKEKKFFLILDDVWP 288 (915)
Q Consensus 274 l~~k~~LlVlDdvw~ 288 (915)
...=+|++|....
T Consensus 253 --~~~DlVLIDTaGr 265 (388)
T PRK12723 253 --KDFDLVLVDTIGK 265 (388)
T ss_pred --CCCCEEEEcCCCC
Confidence 3456888998854
No 310
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.47 E-value=0.092 Score=50.39 Aligned_cols=119 Identities=15% Similarity=0.044 Sum_probs=63.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcccccccCCCeEE--EEEeCCCCCHHHHHHHHHHHh---hCC----CCC-ccc---HH
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRI--WVCVSDPFDEFRIAKAIIEGL---EGS----LPN-LRE---LN 264 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~--wv~vs~~~~~~~~~~~i~~~l---~~~----~~~-~~~---~~ 264 (915)
...|-|++..|.||||.|-...-. .....+.+.+ |+.-.........++...-.+ +.. ..+ ..+ ..
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~r-a~~~g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~ 83 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALR-ALGHGKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIAK 83 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHH-HHHCCCeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHHH
Confidence 467889999999999999554432 1222232211 333332334444444420000 010 001 011 12
Q ss_pred HHHHHHHHHhcc-CeEEEEEeCCCC---CCccChhhhHHhhhcCCCCceEEEEcCch
Q 038751 265 SLLEYIHTSIKE-KKFFLILDDVWP---DDYSKWEPFHNCLMNGLCGSRILVTTRKE 317 (915)
Q Consensus 265 ~~~~~l~~~l~~-k~~LlVlDdvw~---~~~~~~~~l~~~l~~~~~gs~iivTtR~~ 317 (915)
...+..++.+.. +-=|+|||.+-. ...-..+.+...+.....+..||+|-|+.
T Consensus 84 ~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 84 AAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 233334444544 445999999821 12234556777777777788999999975
No 311
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.46 E-value=0.016 Score=55.79 Aligned_cols=93 Identities=19% Similarity=0.223 Sum_probs=68.6
Q ss_pred HHhhcCCCCCcceEEEeeeCCCCCCCccc-CccCccEEEEcCcCC--CCCCCCCCCCCCcceeeccccccceEeCccccC
Q 038751 722 VCEALRPPPDIKSLEIMVFKGRTPSNWIG-SLNKLKMLTLNSFVK--CEIMPPLGKLPSLEILRIWHMRSVKRVGDEFLG 798 (915)
Q Consensus 722 ~~~~l~~~~~L~~L~l~~~~~~~~p~~~~-~l~~L~~L~L~~~~~--~~~l~~l~~Lp~L~~L~L~~~~~l~~~~~~~~~ 798 (915)
.+..+..++.|..|.+.+|..+.+-.-+. .+++|..|.|.+|.. +..+.++..+|.|++|.+-+++ ++.... +.
T Consensus 56 ~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Np-v~~k~~--YR 132 (233)
T KOG1644|consen 56 KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNP-VEHKKN--YR 132 (233)
T ss_pred hcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCc-hhcccC--ce
Confidence 35667888999999999999888744344 789999999998864 4578889999999999998877 221110 11
Q ss_pred CcccccccccccCCCcccccCcccceeeecCcc
Q 038751 799 MEISDHIHIHGTSSSSSVIAFPKLQKLELTGMD 831 (915)
Q Consensus 799 ~~~l~~l~l~~~~~~~~~~~f~~L~~L~l~~~~ 831 (915)
. .-+..+|+|+.|++.+..
T Consensus 133 ~--------------yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 133 L--------------YVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred e--------------EEEEecCcceEeehhhhh
Confidence 0 013478999999998754
No 312
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.45 E-value=0.13 Score=58.56 Aligned_cols=174 Identities=19% Similarity=0.197 Sum_probs=85.9
Q ss_pred cCccccchHHHHHHHHHHhcccc-------cccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCH
Q 038751 170 VSDVRGRDEEKNILKRKLLCESN-------EERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDE 242 (915)
Q Consensus 170 ~~~~~Gr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 242 (915)
-+++=|-++-+.++.+...-+.. -+-...+-|..+|++|+|||++|+.+.+. ....| +.+..+
T Consensus 433 W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne--~~~nF-----lsvkgp--- 502 (693)
T KOG0730|consen 433 WDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANE--AGMNF-----LSVKGP--- 502 (693)
T ss_pred hhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhh--hcCCe-----eeccCH---
Confidence 34566676666665544432211 02235678899999999999999999993 34444 223221
Q ss_pred HHHHHHHHHHhhCCCCCcccHHHHHHHHHHHhccCeEEEEEeCCCCC-------CccChhhhHHhhh----cCCCCceEE
Q 038751 243 FRIAKAIIEGLEGSLPNLRELNSLLEYIHTSIKEKKFFLILDDVWPD-------DYSKWEPFHNCLM----NGLCGSRIL 311 (915)
Q Consensus 243 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~-------~~~~~~~l~~~l~----~~~~gs~ii 311 (915)
+++....+ .....+.+.+.+.=+-.+.+|.||.+..- ....-+.+...+. .......|+
T Consensus 503 -----EL~sk~vG-----eSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ 572 (693)
T KOG0730|consen 503 -----ELFSKYVG-----ESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVL 572 (693)
T ss_pred -----HHHHHhcC-----chHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEE
Confidence 11111111 11122333333333445688888887321 0011222222222 112222333
Q ss_pred E---EcCchHHHh-hhc---CcCeEeCCCCCHHHHHHHHHHhHcCCCCCCchhHHHHHHH
Q 038751 312 V---TTRKETVAR-MME---STDVISIKELSEQECWSLFKRFAFSGRSPTECEQLEEIGR 364 (915)
Q Consensus 312 v---TtR~~~v~~-~~~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~ 364 (915)
| |.|...+-. .+. ....+.++.-+.+.-.++|+.++-.-.- .+.-+++++|+
T Consensus 573 ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~-~~~vdl~~La~ 631 (693)
T KOG0730|consen 573 VIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPF-SEDVDLEELAQ 631 (693)
T ss_pred EEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCC-CccccHHHHHH
Confidence 3 223222221 122 2557777777778888899888744322 22234555443
No 313
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.44 E-value=0.05 Score=54.27 Aligned_cols=80 Identities=21% Similarity=0.249 Sum_probs=43.4
Q ss_pred EEEEEecCCCcHHHHHHHHhcccccccCCC---eEEEEEeCCCCCHHHHHHHHHHHhh----CCCCCcccHHHHHHHHHH
Q 038751 200 IISLVGMGGIGKTTLAQFAYNDKDVIENFD---KRIWVCVSDPFDEFRIAKAIIEGLE----GSLPNLRELNSLLEYIHT 272 (915)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~---~~~wv~vs~~~~~~~~~~~i~~~l~----~~~~~~~~~~~~~~~l~~ 272 (915)
||+|.|.+|+||||+|+.+...... ..+. ....++............. -.... -..+..-+.+.+.+.|..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~-~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~p~a~d~~~l~~~l~~ 78 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNK-RGIPAMEMDIILSLDDFYDDYHLRDR-KGRGENRYNFDHPDAFDFDLLKEDLKA 78 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTT-CTTTCCCSEEEEEGGGGBHHHHHHHH-HHHCTTTSSTTSGGGBSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCc-cCcCccceeEEEeecccccccchhhH-hhccccccCCCCccccCHHHHHHHHHH
Confidence 6999999999999999998873211 1222 1333333332222222221 11111 122344567777777777
Q ss_pred HhccCeEEE
Q 038751 273 SIKEKKFFL 281 (915)
Q Consensus 273 ~l~~k~~Ll 281 (915)
..+++..-+
T Consensus 79 L~~g~~i~~ 87 (194)
T PF00485_consen 79 LKNGGSIEI 87 (194)
T ss_dssp HHTTSCEEE
T ss_pred HhCCCcccc
Confidence 666665443
No 314
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.41 E-value=0.051 Score=55.23 Aligned_cols=74 Identities=14% Similarity=0.083 Sum_probs=39.8
Q ss_pred EEEEEecCCCcHHHHHHHHhccccccc-CC-CeEEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHhc
Q 038751 200 IISLVGMGGIGKTTLAQFAYNDKDVIE-NF-DKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLRELNSLLEYIHTSIK 275 (915)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F-~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 275 (915)
+|+|.|.+|+||||+|+.+... ... .. ..+..++...-+............-....++.-+.+.+.+.+.....
T Consensus 1 IigI~G~sGSGKTTla~~L~~~--l~~~~~~~~v~vi~~D~f~~~~~~~~~~~~~~~~g~p~~~d~~~l~~~L~~l~~ 76 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQAL--LSRWPDHPNVELITTDGFLYPNKELIERGLMDRKGFPESYDMEALLKFLKDIKS 76 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHH--HhhcCCCCcEEEEecCcccCcHHHHHHhhhhhcCCCcccCCHHHHHHHHHHHHC
Confidence 5899999999999999998873 221 01 12344555444333332222211101123444566666666655544
No 315
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=95.40 E-value=0.055 Score=65.38 Aligned_cols=134 Identities=14% Similarity=0.161 Sum_probs=73.4
Q ss_pred CccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHH-H
Q 038751 171 SDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKA-I 249 (915)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~-i 249 (915)
..++|+...++++.+.+..... ...-|.|+|..|+|||++|+.+++... +.. ...+.+++..-. ...+.. +
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~----~~~pVLI~GE~GTGK~~lA~~ih~~s~-r~~-~~~v~i~c~~~~--~~~~~~~l 447 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQ----SDSTVLILGETGTGKELIARAIHNLSG-RNN-RRMVKMNCAAMP--AGLLESDL 447 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhC----CCCCEEEECCCCcCHHHHHHHHHHhcC-CCC-CCeEEEecccCC--hhHhhhhh
Confidence 4689999988888877764432 234588999999999999999987421 111 123344444321 122222 1
Q ss_pred HHHhhCCCCCcccHHHHHHHHHHHhccCeEEEEEeCCCCCCccChhhhHHhhhcCC-----------CCceEEEEcCch
Q 038751 250 IEGLEGSLPNLRELNSLLEYIHTSIKEKKFFLILDDVWPDDYSKWEPFHNCLMNGL-----------CGSRILVTTRKE 317 (915)
Q Consensus 250 ~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iivTtR~~ 317 (915)
.....+...+.. ......+. ....=.|+||||..-.......+...+..+. .+.|||.||...
T Consensus 448 fg~~~~~~~g~~--~~~~g~le---~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~ 521 (686)
T PRK15429 448 FGHERGAFTGAS--AQRIGRFE---LADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRD 521 (686)
T ss_pred cCcccccccccc--cchhhHHH---hcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCC
Confidence 111111111100 01111121 1223469999997655555666766665431 245888888654
No 316
>PRK05439 pantothenate kinase; Provisional
Probab=95.38 E-value=0.075 Score=56.46 Aligned_cols=81 Identities=16% Similarity=0.170 Sum_probs=46.0
Q ss_pred cCceEEEEEEecCCCcHHHHHHHHhcccccccC--CCeEEEEEeCCCCCHHHHHHHHHHHh-hCCCCCcccHHHHHHHHH
Q 038751 195 RNAVQIISLVGMGGIGKTTLAQFAYNDKDVIEN--FDKRIWVCVSDPFDEFRIAKAIIEGL-EGSLPNLRELNSLLEYIH 271 (915)
Q Consensus 195 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~--F~~~~wv~vs~~~~~~~~~~~i~~~l-~~~~~~~~~~~~~~~~l~ 271 (915)
.+..-+|+|.|.+|+||||+|+.+.. ..... -..+.-++...-+...+.+..- ..+ ....++.-+.+.+...|.
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~--~l~~~~~~~~v~vi~~DdFy~~~~~l~~~-~l~~~kg~Pes~D~~~l~~~L~ 159 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQA--LLSRWPEHPKVELVTTDGFLYPNAVLEER-GLMKRKGFPESYDMRALLRFLS 159 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH--HHHhhCCCCceEEEeccccccCHHHHhhh-hccccCCCcccccHHHHHHHHH
Confidence 34678999999999999999988876 22221 1234445544433333222211 001 112344556677777777
Q ss_pred HHhccCe
Q 038751 272 TSIKEKK 278 (915)
Q Consensus 272 ~~l~~k~ 278 (915)
....++.
T Consensus 160 ~Lk~G~~ 166 (311)
T PRK05439 160 DVKSGKP 166 (311)
T ss_pred HHHcCCC
Confidence 6666654
No 317
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.38 E-value=0.21 Score=58.01 Aligned_cols=158 Identities=16% Similarity=0.134 Sum_probs=84.9
Q ss_pred CccccchHHHHHHHHHH---hccccc----ccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHH
Q 038751 171 SDVRGRDEEKNILKRKL---LCESNE----ERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEF 243 (915)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L---~~~~~~----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 243 (915)
.++.|.+...+.+.+.+ ...... +-...+.+.++|++|.|||.||+++++ ....+|-.+ ...
T Consensus 242 ~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~--~~~~~fi~v-----~~~---- 310 (494)
T COG0464 242 DDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVAL--ESRSRFISV-----KGS---- 310 (494)
T ss_pred ehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHh--hCCCeEEEe-----eCH----
Confidence 34556555554444443 222110 124566899999999999999999998 333444322 210
Q ss_pred HHHHHHHHHhhCCCCCcccHHHHHHHHHHHhccCeEEEEEeCCCC-----CCc------cChhhhHHhhhcC--CCCceE
Q 038751 244 RIAKAIIEGLEGSLPNLRELNSLLEYIHTSIKEKKFFLILDDVWP-----DDY------SKWEPFHNCLMNG--LCGSRI 310 (915)
Q Consensus 244 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~-----~~~------~~~~~l~~~l~~~--~~gs~i 310 (915)
+++... .+ .....+...+....+..+..|++|++.. ... ....++...+... ..+..|
T Consensus 311 ----~l~sk~----vG-esek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~v 381 (494)
T COG0464 311 ----ELLSKW----VG-ESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLV 381 (494)
T ss_pred ----HHhccc----cc-hHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEE
Confidence 111111 11 1122233344444467899999999832 110 1222233333222 233334
Q ss_pred EEEcCchHHHhh--h---cCcCeEeCCCCCHHHHHHHHHHhHc
Q 038751 311 LVTTRKETVARM--M---ESTDVISIKELSEQECWSLFKRFAF 348 (915)
Q Consensus 311 ivTtR~~~v~~~--~---~~~~~~~l~~L~~~~~~~lf~~~~~ 348 (915)
|-||-.+..... . .-...+.+.+-+.++..+.|+.+.-
T Consensus 382 i~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~ 424 (494)
T COG0464 382 IAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLR 424 (494)
T ss_pred EecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhc
Confidence 445544432221 1 2256888999999999999998875
No 318
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=95.37 E-value=0.076 Score=61.62 Aligned_cols=132 Identities=14% Similarity=0.167 Sum_probs=74.5
Q ss_pred cCccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHH
Q 038751 170 VSDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAI 249 (915)
Q Consensus 170 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 249 (915)
...++|+...++++.+.+..... ...-|.|+|..|+|||++|+.+.+... ..-...+.|+++.-.+ ..+..
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~----~~~pVlI~Ge~GtGK~~~A~~ih~~s~--r~~~p~v~v~c~~~~~--~~~e~- 256 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAA----SDLNVLILGETGVGKELVARAIHAASP--RADKPLVYLNCAALPE--SLAES- 256 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhC----CCCcEEEECCCCccHHHHHHHHHHhCC--cCCCCeEEEEcccCCh--HHHHH-
Confidence 45799999999999988876543 334678999999999999999987422 1111234455544321 22221
Q ss_pred HHHhhCC----CCCcccHHHHHHHHHHHhccCeEEEEEeCCCCCCccChhhhHHhhhcCC-----------CCceEEEEc
Q 038751 250 IEGLEGS----LPNLRELNSLLEYIHTSIKEKKFFLILDDVWPDDYSKWEPFHNCLMNGL-----------CGSRILVTT 314 (915)
Q Consensus 250 ~~~l~~~----~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iivTt 314 (915)
.+.+. ..+... + ....+.. ...=.|+||++..-.......+...+..+. ...|||.||
T Consensus 257 --~lfG~~~g~~~ga~~-~-~~g~~~~---a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t 329 (509)
T PRK05022 257 --ELFGHVKGAFTGAIS-N-RSGKFEL---ADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAAT 329 (509)
T ss_pred --HhcCccccccCCCcc-c-CCcchhh---cCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEec
Confidence 22221 111100 0 0001111 122247899996655555666766665432 145888888
Q ss_pred Cch
Q 038751 315 RKE 317 (915)
Q Consensus 315 R~~ 317 (915)
...
T Consensus 330 ~~~ 332 (509)
T PRK05022 330 NRD 332 (509)
T ss_pred CCC
Confidence 654
No 319
>PRK14974 cell division protein FtsY; Provisional
Probab=95.35 E-value=0.1 Score=56.35 Aligned_cols=89 Identities=17% Similarity=0.137 Sum_probs=46.8
Q ss_pred ceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCC--CHHHHHHHHHHHhhCCCC---CcccHHH-HHHHH
Q 038751 197 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPF--DEFRIAKAIIEGLEGSLP---NLRELNS-LLEYI 270 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~~~~~i~~~l~~~~~---~~~~~~~-~~~~l 270 (915)
...+|.++|++|+||||++.+++.... ...+ .++.+. .+.+ ...+.++...+.++.... ...+... +.+.+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~-~~g~-~V~li~-~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai 215 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLK-KNGF-SVVIAA-GDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAI 215 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH-HcCC-eEEEec-CCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHH
Confidence 468999999999999998877775322 2223 233343 2222 233445555666554321 1122222 22333
Q ss_pred HHHhccCeEEEEEeCCCC
Q 038751 271 HTSIKEKKFFLILDDVWP 288 (915)
Q Consensus 271 ~~~l~~k~~LlVlDdvw~ 288 (915)
...-....=+|++|....
T Consensus 216 ~~~~~~~~DvVLIDTaGr 233 (336)
T PRK14974 216 EHAKARGIDVVLIDTAGR 233 (336)
T ss_pred HHHHhCCCCEEEEECCCc
Confidence 322222223889998854
No 320
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.34 E-value=0.11 Score=53.27 Aligned_cols=48 Identities=17% Similarity=0.096 Sum_probs=31.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHH
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAI 249 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 249 (915)
-.++.|.|.+|+||||+|.++... ..+.. ..+++++... +..++.+.+
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~-~~~~g-~~~~yi~~e~--~~~~~~~~~ 71 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYG-FLQNG-YSVSYVSTQL--TTTEFIKQM 71 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH-HHhCC-CcEEEEeCCC--CHHHHHHHH
Confidence 458999999999999998655442 11222 3456666433 455666665
No 321
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.32 E-value=0.18 Score=50.53 Aligned_cols=55 Identities=22% Similarity=0.199 Sum_probs=32.3
Q ss_pred HHHHHhccCeEEEEEeCCCCC-CccChhhhHHhhhc--CCCCceEEEEcCchHHHhhh
Q 038751 269 YIHTSIKEKKFFLILDDVWPD-DYSKWEPFHNCLMN--GLCGSRILVTTRKETVARMM 323 (915)
Q Consensus 269 ~l~~~l~~k~~LlVlDdvw~~-~~~~~~~l~~~l~~--~~~gs~iivTtR~~~v~~~~ 323 (915)
.+.+.|.-++-+||+|..-+. |...-..+...|.. ...+--+|+.|-+-.+...+
T Consensus 151 aIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~ 208 (252)
T COG1124 151 AIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHM 208 (252)
T ss_pred HHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHH
Confidence 466778888889999987321 11111123333332 23466788888887766654
No 322
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.27 E-value=0.09 Score=56.93 Aligned_cols=58 Identities=19% Similarity=0.162 Sum_probs=41.2
Q ss_pred ceEEEEEEecCCCcHHHHHHHHhcccccc---c-CCCeEEEEEeCCCCCHHHHHHHHHHHhhC
Q 038751 197 AVQIISLVGMGGIGKTTLAQFAYNDKDVI---E-NFDKRIWVCVSDPFDEFRIAKAIIEGLEG 255 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~-~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 255 (915)
.-.++-|+|.+|+|||+||..++-..... + .-..++|++....|...++. +|++.++.
T Consensus 122 ~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~~ 183 (342)
T PLN03186 122 TGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFGL 183 (342)
T ss_pred CceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcCC
Confidence 46789999999999999997766432221 1 11268999999999887764 55665543
No 323
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.27 E-value=0.11 Score=50.80 Aligned_cols=22 Identities=45% Similarity=0.511 Sum_probs=19.5
Q ss_pred EEEEEecCCCcHHHHHHHHhcc
Q 038751 200 IISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
++.++|++|+||||++..+...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~ 23 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALY 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6789999999999999888763
No 324
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=95.26 E-value=0.074 Score=53.53 Aligned_cols=28 Identities=39% Similarity=0.405 Sum_probs=23.6
Q ss_pred cCceEEEEEEecCCCcHHHHHHHHhccc
Q 038751 195 RNAVQIISLVGMGGIGKTTLAQFAYNDK 222 (915)
Q Consensus 195 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 222 (915)
.+....|.++||+|.||||+.|.++.+.
T Consensus 16 ~~~p~~ilVvGMAGSGKTTF~QrL~~hl 43 (366)
T KOG1532|consen 16 IQRPVIILVVGMAGSGKTTFMQRLNSHL 43 (366)
T ss_pred ccCCcEEEEEecCCCCchhHHHHHHHHH
Confidence 3456788999999999999999988753
No 325
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.24 E-value=0.038 Score=59.01 Aligned_cols=26 Identities=19% Similarity=0.383 Sum_probs=23.7
Q ss_pred CceEEEEEEecCCCcHHHHHHHHhcc
Q 038751 196 NAVQIISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 196 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
..++.+.|||++|+|||.+|+.+++.
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~e 171 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKK 171 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 45789999999999999999999994
No 326
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=95.23 E-value=0.11 Score=57.26 Aligned_cols=22 Identities=32% Similarity=0.625 Sum_probs=19.9
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 038751 199 QIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
.+++|+|++|.||||||+.+..
T Consensus 363 ~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 363 EALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred ceEEEECCCCccHHHHHHHHHc
Confidence 5799999999999999999865
No 327
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=95.22 E-value=0.061 Score=58.37 Aligned_cols=45 Identities=13% Similarity=0.062 Sum_probs=34.2
Q ss_pred cccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcc
Q 038751 173 VRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 173 ~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
++|+...++++.+.+..... .-.-|.|+|..|+||+++|+.+.+.
T Consensus 1 liG~S~~m~~~~~~~~~~a~----~~~pVLI~GE~GtGK~~lAr~iH~~ 45 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAP----LDRPVLIIGERGTGKELIAARLHYL 45 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhC----CCCCEEEECCCCChHHHHHHHHHHh
Confidence 46777777777777765432 2344789999999999999998763
No 328
>PTZ00035 Rad51 protein; Provisional
Probab=95.22 E-value=0.12 Score=56.04 Aligned_cols=57 Identities=23% Similarity=0.192 Sum_probs=39.1
Q ss_pred ceEEEEEEecCCCcHHHHHHHHhcccccc----cCCCeEEEEEeCCCCCHHHHHHHHHHHhh
Q 038751 197 AVQIISLVGMGGIGKTTLAQFAYNDKDVI----ENFDKRIWVCVSDPFDEFRIAKAIIEGLE 254 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 254 (915)
.-.++.|+|.+|+|||||+..++-..+.. +.=..++|++....++..++ .++.+.++
T Consensus 117 ~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g 177 (337)
T PTZ00035 117 TGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFG 177 (337)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhC
Confidence 56899999999999999998876432211 11135679998887777764 44455543
No 329
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.21 E-value=0.082 Score=57.20 Aligned_cols=56 Identities=21% Similarity=0.235 Sum_probs=39.5
Q ss_pred ceEEEEEEecCCCcHHHHHHHHhccccccc----CCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 038751 197 AVQIISLVGMGGIGKTTLAQFAYNDKDVIE----NFDKRIWVCVSDPFDEFRIAKAIIEGL 253 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l 253 (915)
.-.++-|+|.+|+|||+++.+++....... .=..++||+....|+..++. ++++.+
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~ 153 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEAR 153 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHc
Confidence 458899999999999999987765422210 11268999999888877654 444444
No 330
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.21 E-value=0.078 Score=54.46 Aligned_cols=26 Identities=35% Similarity=0.483 Sum_probs=23.2
Q ss_pred CceEEEEEEecCCCcHHHHHHHHhcc
Q 038751 196 NAVQIISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 196 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
+...+|+|.|+.|.|||||++.+..-
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~ 56 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEAL 56 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999988873
No 331
>PRK07667 uridine kinase; Provisional
Probab=95.19 E-value=0.023 Score=56.59 Aligned_cols=38 Identities=21% Similarity=0.205 Sum_probs=29.3
Q ss_pred HHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcc
Q 038751 180 KNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 180 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
.+.|.+.+.... +...+|+|.|.+|+||||+|+.+...
T Consensus 3 ~~~~~~~~~~~~----~~~~iIgI~G~~gsGKStla~~L~~~ 40 (193)
T PRK07667 3 TNELINIMKKHK----ENRFILGIDGLSRSGKTTFVANLKEN 40 (193)
T ss_pred HHHHHHHHHhcC----CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 456666665432 35589999999999999999998873
No 332
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.18 E-value=0.073 Score=56.13 Aligned_cols=80 Identities=16% Similarity=0.142 Sum_probs=43.6
Q ss_pred CceEEEEEEecCCCcHHHHHHHHhcccccccCC--CeEEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHH
Q 038751 196 NAVQIISLVGMGGIGKTTLAQFAYNDKDVIENF--DKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLRELNSLLEYIHTS 273 (915)
Q Consensus 196 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 273 (915)
....+|+|.|..|+||||+|+.+..- ..... ..+..++...-....+.....-..-....++.-+.+.+...+...
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~l--l~~~~~~g~V~vi~~D~f~~~~~~l~~~g~~~~~g~P~s~D~~~l~~~L~~L 137 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQAL--LSRWPEHRKVELITTDGFLHPNQVLKERNLMKKKGFPESYDMHRLVKFLSDL 137 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH--HhhcCCCCceEEEecccccccHHHHHHcCCccccCCChhccHHHHHHHHHHH
Confidence 35689999999999999999877541 21111 123444444433323322221100011234556667777777666
Q ss_pred hccC
Q 038751 274 IKEK 277 (915)
Q Consensus 274 l~~k 277 (915)
..++
T Consensus 138 k~g~ 141 (290)
T TIGR00554 138 KSGK 141 (290)
T ss_pred HCCC
Confidence 5554
No 333
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=95.13 E-value=0.092 Score=52.68 Aligned_cols=119 Identities=15% Similarity=0.078 Sum_probs=61.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHhccc--c-cccC--CC--------------e-EEEEEeCCCCCH--HHHHHHHHHHhhC
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYNDK--D-VIEN--FD--------------K-RIWVCVSDPFDE--FRIAKAIIEGLEG 255 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~--~-~~~~--F~--------------~-~~wv~vs~~~~~--~~~~~~i~~~l~~ 255 (915)
-.+++|+|..|.|||||.+.+.... . ..+. |+ . +.++ .+.... .....+++....
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v--~q~~~~~~~~~~~~~l~~~~- 102 (200)
T cd03217 26 GEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLA--FQYPPEIPGVKNADFLRYVN- 102 (200)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEe--ecChhhccCccHHHHHhhcc-
Confidence 3689999999999999999887741 0 1110 00 0 1122 121110 011111111110
Q ss_pred CCCCcccHHHHHHHHHHHhccCeEEEEEeCCCC-CCccChhhhHHhhhcC-CCCceEEEEcCchHHHh
Q 038751 256 SLPNLRELNSLLEYIHTSIKEKKFFLILDDVWP-DDYSKWEPFHNCLMNG-LCGSRILVTTRKETVAR 321 (915)
Q Consensus 256 ~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~-~~~~~~~~l~~~l~~~-~~gs~iivTtR~~~v~~ 321 (915)
...+..+...-.+.+.+-.++-++++|+.-. -|......+...+... ..|..||++|.+.....
T Consensus 103 --~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~ 168 (200)
T cd03217 103 --EGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLD 168 (200)
T ss_pred --ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHH
Confidence 1122223333345666677788999998732 2233344444444432 23667888888776555
No 334
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.11 E-value=0.1 Score=58.50 Aligned_cols=25 Identities=44% Similarity=0.396 Sum_probs=22.0
Q ss_pred ceEEEEEEecCCCcHHHHHHHHhcc
Q 038751 197 AVQIISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
...+|.++|..|+||||+|..++..
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~ 118 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARY 118 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4689999999999999999888764
No 335
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.07 E-value=0.16 Score=54.94 Aligned_cols=90 Identities=18% Similarity=0.050 Sum_probs=53.5
Q ss_pred ceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCC-CCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHhc
Q 038751 197 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDP-FDEFRIAKAIIEGLEGSLPNLRELNSLLEYIHTSIK 275 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 275 (915)
..+++.++|+.|+||||++..+......+ -..+.+|+.... ....+-++...+.++.......+..++...+...-.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~--g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~ 282 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQ--NRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTY 282 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHh
Confidence 46899999999999999998877632212 234556665432 233455555555555432223455555555544321
Q ss_pred -cCeEEEEEeCCCC
Q 038751 276 -EKKFFLILDDVWP 288 (915)
Q Consensus 276 -~k~~LlVlDdvw~ 288 (915)
+..=+|++|-.-.
T Consensus 283 ~~~~D~VLIDTAGr 296 (407)
T PRK12726 283 VNCVDHILIDTVGR 296 (407)
T ss_pred cCCCCEEEEECCCC
Confidence 3345788898743
No 336
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.07 E-value=0.042 Score=60.40 Aligned_cols=53 Identities=28% Similarity=0.277 Sum_probs=39.0
Q ss_pred Cccccch---HHHHHHHHHHhccccc---ccCceEEEEEEecCCCcHHHHHHHHhcccc
Q 038751 171 SDVRGRD---EEKNILKRKLLCESNE---ERNAVQIISLVGMGGIGKTTLAQFAYNDKD 223 (915)
Q Consensus 171 ~~~~Gr~---~~~~~l~~~L~~~~~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 223 (915)
.++-|-| .|+++|+++|..+... +..=++=|.++|++|.|||-||++|+....
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~ 362 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAG 362 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccC
Confidence 4566765 4678888888765431 122356788999999999999999998543
No 337
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.05 E-value=0.19 Score=53.28 Aligned_cols=54 Identities=19% Similarity=0.140 Sum_probs=36.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhh
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLE 254 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 254 (915)
-.++.|.|.+|+||||++..+..... ..+=..++|++... ...++...+...+.
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~-~~~g~~vl~iS~E~--~~~~~~~r~~~~~~ 83 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLI-TQHGVRVGTISLEE--PVVRTARRLLGQYA 83 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH-HhcCceEEEEEccc--CHHHHHHHHHHHHh
Confidence 45888999999999999988766321 22124577887765 45666666655543
No 338
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=95.04 E-value=0.29 Score=49.44 Aligned_cols=53 Identities=15% Similarity=0.214 Sum_probs=32.0
Q ss_pred HHHHHhccCeEEEEEeCCCC-CCccChhhhHHhhhcCCCCceEEEEcCchHHHh
Q 038751 269 YIHTSIKEKKFFLILDDVWP-DDYSKWEPFHNCLMNGLCGSRILVTTRKETVAR 321 (915)
Q Consensus 269 ~l~~~l~~k~~LlVlDdvw~-~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~ 321 (915)
.+.+.+-.++-++++|+... -+....+.+...+.....|..||++|.+.....
T Consensus 135 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~ 188 (207)
T cd03369 135 CLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTII 188 (207)
T ss_pred HHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHh
Confidence 34555666778999998743 223334445555554334667778887766554
No 339
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=94.97 E-value=0.018 Score=53.08 Aligned_cols=21 Identities=38% Similarity=0.529 Sum_probs=19.1
Q ss_pred EEEEecCCCcHHHHHHHHhcc
Q 038751 201 ISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 201 i~I~G~gGiGKTtLa~~v~~~ 221 (915)
|.|.|.+|+||||+|+.+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999998873
No 340
>PTZ00301 uridine kinase; Provisional
Probab=94.95 E-value=0.027 Score=56.60 Aligned_cols=23 Identities=26% Similarity=0.497 Sum_probs=21.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
..+|+|.|.+|+||||||+.+.+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHH
Confidence 57899999999999999998876
No 341
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=94.92 E-value=0.031 Score=52.68 Aligned_cols=36 Identities=31% Similarity=0.238 Sum_probs=26.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEE
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVC 235 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 235 (915)
..||+|.|.+|.||||||+.+.+ +....-..+.++.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~--~L~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALER--RLFARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHH--HHHHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEec
Confidence 36899999999999999999988 3433334445543
No 342
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=94.90 E-value=0.15 Score=52.41 Aligned_cols=114 Identities=17% Similarity=0.169 Sum_probs=61.5
Q ss_pred ceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhhCCC-------------------
Q 038751 197 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSL------------------- 257 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~------------------- 257 (915)
.-.++.|.|.+|+||||||..+.... . ..-..++|++.... ...+.+. +++++...
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~-~-~~g~~~~~is~e~~--~~~i~~~-~~~~g~~~~~~~~~~~l~i~d~~~~~~ 93 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKG-L-RDGDPVIYVTTEES--RESIIRQ-AAQFGMDFEKAIEEGKLVIIDALMKEK 93 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHH-H-hcCCeEEEEEccCC--HHHHHHH-HHHhCCCHHHHhhcCCEEEEEcccccc
Confidence 45789999999999999998765421 1 22346788877543 3333332 22222100
Q ss_pred -----CCcccHHHHHHHHHHHhcc---CeEEEEEeCCCC---CCccChhhhHHhhhc--CCCCceEEEEcC
Q 038751 258 -----PNLRELNSLLEYIHTSIKE---KKFFLILDDVWP---DDYSKWEPFHNCLMN--GLCGSRILVTTR 315 (915)
Q Consensus 258 -----~~~~~~~~~~~~l~~~l~~---k~~LlVlDdvw~---~~~~~~~~l~~~l~~--~~~gs~iivTtR 315 (915)
....+.+++...+.+..+. +.-.+|+|.+.. +++..-..+...+.. ...|..+|+|+.
T Consensus 94 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~vvIDsl~~l~~~~~~~~r~~~~~l~~~l~~~~~tvil~~~ 164 (229)
T TIGR03881 94 EDEWSLRELSIEELLNKVIEAKKYLGYGHARLVIDSMSAFWLDKPAMARKYSYYLKRVLNRWNFTILLTSQ 164 (229)
T ss_pred ccccccccCCHHHHHHHHHHHHHhhccCceEEEecCchhhhccChHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 0012455666666665532 345789998732 121111122112221 235778888876
No 343
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=94.87 E-value=0.033 Score=59.21 Aligned_cols=51 Identities=22% Similarity=0.261 Sum_probs=45.1
Q ss_pred cCccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhc
Q 038751 170 VSDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 170 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
...++|-++.++++++.+...+.+.+..-+++.++|+.|.||||||..+.+
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~ 110 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKR 110 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999887765667789999999999999999988876
No 344
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.84 E-value=0.093 Score=51.53 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=21.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcc
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
-.+++|+|..|.|||||++.+...
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999999863
No 345
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.83 E-value=0.078 Score=50.83 Aligned_cols=116 Identities=19% Similarity=0.153 Sum_probs=61.9
Q ss_pred EEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCC--CHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHhcc
Q 038751 199 QIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPF--DEFRIAKAIIEGLEGSLPNLRELNSLLEYIHTSIKE 276 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 276 (915)
.+++|+|..|.|||||++.+.... ......+++.-.... ...... ..+.-. ++....+...-.+.+.+..
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~---~~~~G~i~~~~~~~~~~~~~~~~----~~i~~~-~qlS~G~~~r~~l~~~l~~ 97 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLL---KPTSGEILIDGKDIAKLPLEELR----RRIGYV-PQLSGGQRQRVALARALLL 97 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---CCCccEEEECCEEcccCCHHHHH----hceEEE-eeCCHHHHHHHHHHHHHhc
Confidence 689999999999999999998742 223444444322111 111111 111110 0122223333345566666
Q ss_pred CeEEEEEeCCCC-CCccChhhhHHhhhcC-CCCceEEEEcCchHHHhh
Q 038751 277 KKFFLILDDVWP-DDYSKWEPFHNCLMNG-LCGSRILVTTRKETVARM 322 (915)
Q Consensus 277 k~~LlVlDdvw~-~~~~~~~~l~~~l~~~-~~gs~iivTtR~~~v~~~ 322 (915)
.+-++++|+.-. -|......+...+... ..+..+|++|.+......
T Consensus 98 ~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 98 NPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 788999998742 1222333444444331 225678888877665543
No 346
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=94.82 E-value=0.24 Score=51.21 Aligned_cols=21 Identities=33% Similarity=0.449 Sum_probs=18.2
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 038751 200 IISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~ 220 (915)
+..|+|++|+|||+||..++-
T Consensus 3 ~~ll~g~~G~GKS~lal~la~ 23 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLAL 23 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHH
Confidence 567999999999999977765
No 347
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.80 E-value=0.053 Score=54.86 Aligned_cols=23 Identities=17% Similarity=0.202 Sum_probs=20.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
.+++.|+|+.|.||||+.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 48889999999999999988874
No 348
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.78 E-value=0.24 Score=48.81 Aligned_cols=23 Identities=30% Similarity=0.560 Sum_probs=20.9
Q ss_pred EEEEEEecCCCcHHHHHHHHhcc
Q 038751 199 QIISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
.+++|+|..|.|||||++.+..-
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~ 49 (182)
T cd03215 27 EIVGIAGLVGNGQTELAEALFGL 49 (182)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 57999999999999999999874
No 349
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.77 E-value=0.02 Score=46.06 Aligned_cols=22 Identities=36% Similarity=0.528 Sum_probs=19.6
Q ss_pred EEEEEecCCCcHHHHHHHHhcc
Q 038751 200 IISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
+|.|.|..|+||||+++.+.+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999988873
No 350
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=94.76 E-value=0.19 Score=51.91 Aligned_cols=49 Identities=16% Similarity=0.317 Sum_probs=34.0
Q ss_pred ceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHH
Q 038751 197 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAI 249 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 249 (915)
.-.++.|.|.+|+|||++|.++... .. ..-..++||+... +..++.+.+
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~-~~-~~ge~~lyvs~ee--~~~~i~~~~ 68 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWN-GL-QMGEPGIYVALEE--HPVQVRRNM 68 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH-HH-HcCCcEEEEEeeC--CHHHHHHHH
Confidence 4589999999999999999775442 12 2245678888765 455555543
No 351
>PRK06547 hypothetical protein; Provisional
Probab=94.76 E-value=0.036 Score=53.85 Aligned_cols=25 Identities=32% Similarity=0.328 Sum_probs=22.6
Q ss_pred ceEEEEEEecCCCcHHHHHHHHhcc
Q 038751 197 AVQIISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
...+|.|.|++|+||||+|+.+.+.
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 6789999999999999999999773
No 352
>PRK10867 signal recognition particle protein; Provisional
Probab=94.75 E-value=0.092 Score=58.65 Aligned_cols=24 Identities=38% Similarity=0.468 Sum_probs=20.0
Q ss_pred ceEEEEEEecCCCcHHHHHHHHhc
Q 038751 197 AVQIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
...+|.++|.+|+||||.|..++.
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 468999999999999997766554
No 353
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.75 E-value=0.023 Score=57.50 Aligned_cols=25 Identities=40% Similarity=0.575 Sum_probs=22.6
Q ss_pred ceEEEEEEecCCCcHHHHHHHHhcc
Q 038751 197 AVQIISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
...+|+|+|.+|+||||||+.++..
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 5689999999999999999999873
No 354
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.66 E-value=0.2 Score=49.94 Aligned_cols=23 Identities=35% Similarity=0.465 Sum_probs=21.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
-.+++|+|..|.|||||++.+..
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 33 GTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 36899999999999999999986
No 355
>PRK08233 hypothetical protein; Provisional
Probab=94.64 E-value=0.025 Score=55.80 Aligned_cols=24 Identities=33% Similarity=0.487 Sum_probs=21.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcc
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
..+|+|.|.+|+||||||+.+...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 478999999999999999999873
No 356
>PRK00889 adenylylsulfate kinase; Provisional
Probab=94.62 E-value=0.23 Score=48.56 Aligned_cols=24 Identities=29% Similarity=0.407 Sum_probs=21.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcc
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
..+|+|+|.+|+||||+|+.+...
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~ 27 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEK 27 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 469999999999999999999874
No 357
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.61 E-value=0.027 Score=56.90 Aligned_cols=25 Identities=40% Similarity=0.489 Sum_probs=22.3
Q ss_pred ceEEEEEEecCCCcHHHHHHHHhcc
Q 038751 197 AVQIISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
...+|+|+|++|+||||||+.+...
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999999863
No 358
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.60 E-value=0.05 Score=53.03 Aligned_cols=22 Identities=36% Similarity=0.437 Sum_probs=19.8
Q ss_pred EEEEEecCCCcHHHHHHHHhcc
Q 038751 200 IISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
.|.|.|.+|.||||+|+.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999884
No 359
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.60 E-value=0.34 Score=47.58 Aligned_cols=58 Identities=12% Similarity=0.090 Sum_probs=33.8
Q ss_pred HHHHHHHHhccCeEEEEEeCCCC-CCccChhhhHHhhhc-CCCCceEEEEcCchHHHhhh
Q 038751 266 LLEYIHTSIKEKKFFLILDDVWP-DDYSKWEPFHNCLMN-GLCGSRILVTTRKETVARMM 323 (915)
Q Consensus 266 ~~~~l~~~l~~k~~LlVlDdvw~-~~~~~~~~l~~~l~~-~~~gs~iivTtR~~~v~~~~ 323 (915)
-.-.|.+.|.=++-++.+|..-+ -|++...++...+.. ...|-..|+.|-...-|+.+
T Consensus 143 QRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~V 202 (240)
T COG1126 143 QRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREV 202 (240)
T ss_pred HHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHh
Confidence 33456777877888999999833 133333444443333 34566666666665555543
No 360
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.59 E-value=0.11 Score=57.97 Aligned_cols=24 Identities=33% Similarity=0.387 Sum_probs=20.6
Q ss_pred ceEEEEEEecCCCcHHHHHHHHhc
Q 038751 197 AVQIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
.+.++.++|.+|+||||.|..++.
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~ 121 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAY 121 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 468999999999999999866655
No 361
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=94.55 E-value=0.011 Score=66.77 Aligned_cols=107 Identities=17% Similarity=0.198 Sum_probs=79.3
Q ss_pred HHhhcCCCCCcceEEEeeeCCCCCCCcccCccCccEEEEcCcCCCCCCCCCCCCCCcceeeccccccceEeCccccCCcc
Q 038751 722 VCEALRPPPDIKSLEIMVFKGRTPSNWIGSLNKLKMLTLNSFVKCEIMPPLGKLPSLEILRIWHMRSVKRVGDEFLGMEI 801 (915)
Q Consensus 722 ~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~Lp~L~~L~L~~~~~l~~~~~~~~~~~~ 801 (915)
....+..+.+|+.|++.++....+...+..+++|+.|+|++| .+..+..+..++.|+.|++.+|. +..++. +.....
T Consensus 87 ~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N-~I~~i~~l~~l~~L~~L~l~~N~-i~~~~~-~~~l~~ 163 (414)
T KOG0531|consen 87 ILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFN-KITKLEGLSTLTLLKELNLSGNL-ISDISG-LESLKS 163 (414)
T ss_pred hhcccccccceeeeeccccchhhcccchhhhhcchheecccc-ccccccchhhccchhhheeccCc-chhccC-Cccchh
Confidence 345588899999999999998877765778999999999998 56677788889999999999987 555542 223455
Q ss_pred cccccccccCCCc--c--cccCcccceeeecCcc
Q 038751 802 SDHIHIHGTSSSS--S--VIAFPKLQKLELTGMD 831 (915)
Q Consensus 802 l~~l~l~~~~~~~--~--~~~f~~L~~L~l~~~~ 831 (915)
++.+++++|.+.. . ...+.+|+.+.+.+..
T Consensus 164 L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 164 LKLLDLSYNRIVDIENDELSELISLEELDLGGNS 197 (414)
T ss_pred hhcccCCcchhhhhhhhhhhhccchHHHhccCCc
Confidence 6666776665432 2 2567777777776653
No 362
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.54 E-value=0.12 Score=54.41 Aligned_cols=88 Identities=15% Similarity=0.141 Sum_probs=46.5
Q ss_pred ceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCH--HHHHHHHHHHhhCCC---CCcccH-HHHHHHH
Q 038751 197 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDE--FRIAKAIIEGLEGSL---PNLREL-NSLLEYI 270 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~--~~~~~~i~~~l~~~~---~~~~~~-~~~~~~l 270 (915)
..++|.++|++|+||||++..++... ...-..++++.... +.. .+-++...+..+... ....+. ......+
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l--~~~g~~V~li~~D~-~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l 147 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKL--KKQGKSVLLAAGDT-FRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAI 147 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH--HhcCCEEEEEeCCC-CCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHH
Confidence 46899999999999999987776532 22223455555432 322 233344444443221 111122 2222334
Q ss_pred HHHhccCeEEEEEeCCC
Q 038751 271 HTSIKEKKFFLILDDVW 287 (915)
Q Consensus 271 ~~~l~~k~~LlVlDdvw 287 (915)
.....+..=++++|-.-
T Consensus 148 ~~~~~~~~D~ViIDT~G 164 (272)
T TIGR00064 148 QKAKARNIDVVLIDTAG 164 (272)
T ss_pred HHHHHCCCCEEEEeCCC
Confidence 43333444578888764
No 363
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.54 E-value=0.019 Score=50.90 Aligned_cols=21 Identities=48% Similarity=0.564 Sum_probs=18.8
Q ss_pred EEEEecCCCcHHHHHHHHhcc
Q 038751 201 ISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 201 i~I~G~gGiGKTtLa~~v~~~ 221 (915)
|.|+|.+|+|||++|+.++.+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKD 21 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 579999999999999998774
No 364
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=94.52 E-value=0.079 Score=49.23 Aligned_cols=44 Identities=25% Similarity=0.302 Sum_probs=31.9
Q ss_pred EEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhhCC
Q 038751 200 IISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGS 256 (915)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 256 (915)
+|.|-|++|+||||+|+.+.++.-. -.|+.+ .++++|++..+.+
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl-------~~vsaG------~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGL-------KLVSAG------TIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCC-------ceeecc------HHHHHHHHHcCCC
Confidence 6899999999999999999884221 112222 5788888877654
No 365
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=94.51 E-value=1 Score=44.82 Aligned_cols=154 Identities=14% Similarity=0.151 Sum_probs=84.2
Q ss_pred ccccc-hHHHHHHHHHHhccccc-------ccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHH
Q 038751 172 DVRGR-DEEKNILKRKLLCESNE-------ERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEF 243 (915)
Q Consensus 172 ~~~Gr-~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 243 (915)
+++|+ ++.+++|.+.+.-+... +-.+++-+.++|++|.|||-||+.|+++ ..+-|+.||..
T Consensus 147 eMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahh-------t~c~firvsgs---- 215 (404)
T KOG0728|consen 147 EMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH-------TDCTFIRVSGS---- 215 (404)
T ss_pred HHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhh-------cceEEEEechH----
Confidence 45664 66677766655432210 1235677889999999999999999984 23567777752
Q ss_pred HHHHHHHHHhhCCCCCcccHHHHHHHHHHHh-ccCeEEEEEeCCCCC-----------CccChhhhHHh---hhc--CCC
Q 038751 244 RIAKAIIEGLEGSLPNLRELNSLLEYIHTSI-KEKKFFLILDDVWPD-----------DYSKWEPFHNC---LMN--GLC 306 (915)
Q Consensus 244 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdvw~~-----------~~~~~~~l~~~---l~~--~~~ 306 (915)
++.+. .-+. ....+..+.-.. ...+-.|++|.+.+. +.+....+... +.. ..+
T Consensus 216 elvqk----~ige------gsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatk 285 (404)
T KOG0728|consen 216 ELVQK----YIGE------GSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATK 285 (404)
T ss_pred HHHHH----Hhhh------hHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhcccccccc
Confidence 22211 1111 111222221111 346788888987431 11111222222 221 235
Q ss_pred CceEEEEcCchHHHhh-----hcCcCeEeCCCCCHHHHHHHHHHh
Q 038751 307 GSRILVTTRKETVARM-----MESTDVISIKELSEQECWSLFKRF 346 (915)
Q Consensus 307 gs~iivTtR~~~v~~~-----~~~~~~~~l~~L~~~~~~~lf~~~ 346 (915)
.-+||+.|..-++... .....-++..+-+++.-.++++-+
T Consensus 286 nikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkih 330 (404)
T KOG0728|consen 286 NIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIH 330 (404)
T ss_pred ceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHh
Confidence 5678887765443321 122557788888887777777654
No 366
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=94.51 E-value=0.4 Score=48.58 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=21.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcc
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
-.+++|+|..|.|||||++.+...
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~G~ 48 (213)
T cd03235 25 GEFLAIVGPNGAGKSTLLKAILGL 48 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCC
Confidence 358999999999999999998764
No 367
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=94.49 E-value=0.32 Score=49.70 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=20.7
Q ss_pred EEEEEEecCCCcHHHHHHHHhcc
Q 038751 199 QIISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
.+++|+|..|.|||||++.+...
T Consensus 31 e~~~i~G~nGsGKSTLl~~l~G~ 53 (221)
T cd03244 31 EKVGIVGRTGSGKSSLLLALFRL 53 (221)
T ss_pred CEEEEECCCCCCHHHHHHHHHcC
Confidence 58999999999999999998763
No 368
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=94.46 E-value=0.33 Score=48.39 Aligned_cols=118 Identities=14% Similarity=0.105 Sum_probs=58.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEE---------------EeCCCCC---HHHHHHHHHHHhhCCCCC
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWV---------------CVSDPFD---EFRIAKAIIEGLEGSLPN 259 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv---------------~vs~~~~---~~~~~~~i~~~l~~~~~~ 259 (915)
-.+++|.|..|.|||||.+.+..-.. .......+++ .+.+... ...+...+.-.... ..
T Consensus 35 Ge~~~l~G~nGsGKStLl~~i~Gl~~-~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~--~~ 111 (194)
T cd03213 35 GELTAIMGPSGAGKSTLLNALAGRRT-GLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKL--RG 111 (194)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC-CCCCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHh--cc
Confidence 36899999999999999999877320 0111121111 1111111 11122221110000 01
Q ss_pred cccHHHHHHHHHHHhccCeEEEEEeCCCC-CCccChhhhHHhhhcC-CCCceEEEEcCchH
Q 038751 260 LRELNSLLEYIHTSIKEKKFFLILDDVWP-DDYSKWEPFHNCLMNG-LCGSRILVTTRKET 318 (915)
Q Consensus 260 ~~~~~~~~~~l~~~l~~k~~LlVlDdvw~-~~~~~~~~l~~~l~~~-~~gs~iivTtR~~~ 318 (915)
.+..+...-.+.+.+-.++-++++|+.-. -|......+...+... ..|..||++|.+..
T Consensus 112 LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 172 (194)
T cd03213 112 LSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPS 172 (194)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch
Confidence 12222223345566667778999998732 1223344455545432 24667888887753
No 369
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.43 E-value=0.12 Score=54.17 Aligned_cols=23 Identities=35% Similarity=0.293 Sum_probs=18.0
Q ss_pred EEEEEEecCCCcHHHHHHHHhcc
Q 038751 199 QIISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
..|.|.|.+|+||||+|+.+...
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~ 24 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKY 24 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Confidence 46899999999999999988874
No 370
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=94.41 E-value=0.14 Score=53.62 Aligned_cols=125 Identities=17% Similarity=0.068 Sum_probs=63.4
Q ss_pred HHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEE---eCCCCCHHHHHHHHHHHhhCC
Q 038751 180 KNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVC---VSDPFDEFRIAKAIIEGLEGS 256 (915)
Q Consensus 180 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~---vs~~~~~~~~~~~i~~~l~~~ 256 (915)
.+.++..|... +...-+.|+|..|.|||||.+.+.... . .....+++. +....... ++......-
T Consensus 98 ~~~~l~~l~~~-----~~~~~~~i~g~~g~GKttl~~~l~~~~--~-~~~G~i~~~g~~v~~~d~~~----ei~~~~~~~ 165 (270)
T TIGR02858 98 ADKLLPYLVRN-----NRVLNTLIISPPQCGKTTLLRDLARIL--S-TGISQLGLRGKKVGIVDERS----EIAGCVNGV 165 (270)
T ss_pred HHHHHHHHHhC-----CCeeEEEEEcCCCCCHHHHHHHHhCcc--C-CCCceEEECCEEeecchhHH----HHHHHhccc
Confidence 44455555422 235679999999999999999998732 2 222333331 11111112 222222110
Q ss_pred -CC------CcccHHHHHHHHHHHh-ccCeEEEEEeCCCCCCccChhhhHHhhhcCCCCceEEEEcCchHHHh
Q 038751 257 -LP------NLRELNSLLEYIHTSI-KEKKFFLILDDVWPDDYSKWEPFHNCLMNGLCGSRILVTTRKETVAR 321 (915)
Q Consensus 257 -~~------~~~~~~~~~~~l~~~l-~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~ 321 (915)
.. +..+...-...+...+ ...+-++++|.+- ..+.+..+...+ ..|..||+||-...+..
T Consensus 166 ~q~~~~~r~~v~~~~~k~~~~~~~i~~~~P~villDE~~--~~e~~~~l~~~~---~~G~~vI~ttH~~~~~~ 233 (270)
T TIGR02858 166 PQHDVGIRTDVLDGCPKAEGMMMLIRSMSPDVIVVDEIG--REEDVEALLEAL---HAGVSIIATAHGRDVED 233 (270)
T ss_pred ccccccccccccccchHHHHHHHHHHhCCCCEEEEeCCC--cHHHHHHHHHHH---hCCCEEEEEechhHHHH
Confidence 00 0000000111222222 2578899999983 333344444444 35778999998766543
No 371
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.39 E-value=0.067 Score=52.50 Aligned_cols=22 Identities=36% Similarity=0.575 Sum_probs=19.9
Q ss_pred EEEEEecCCCcHHHHHHHHhcc
Q 038751 200 IISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
+|+|.|.+|+||||||+.+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~ 22 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQ 22 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998873
No 372
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=94.39 E-value=0.25 Score=58.95 Aligned_cols=157 Identities=18% Similarity=0.170 Sum_probs=80.5
Q ss_pred ccccchHHHHHHHHHHhc---cccc---ccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHH
Q 038751 172 DVRGRDEEKNILKRKLLC---ESNE---ERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRI 245 (915)
Q Consensus 172 ~~~Gr~~~~~~l~~~L~~---~~~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~ 245 (915)
++.|.+...+++.+.+.. .... +..-.+-|.++|++|+|||++|+.+.+. ....| +.++.+. +
T Consensus 153 di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~--~~~~f---~~is~~~------~ 221 (644)
T PRK10733 153 DVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE--AKVPF---FTISGSD------F 221 (644)
T ss_pred HHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHH--cCCCE---EEEehHH------h
Confidence 567776665555544422 1100 0112334899999999999999999873 22222 2222221 1
Q ss_pred HHHHHHHhhCCCCCcccHHHHHHHHHHHhccCeEEEEEeCCCCCC----------ccChhhhHH-h---hhc--CCCCce
Q 038751 246 AKAIIEGLEGSLPNLRELNSLLEYIHTSIKEKKFFLILDDVWPDD----------YSKWEPFHN-C---LMN--GLCGSR 309 (915)
Q Consensus 246 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~----------~~~~~~l~~-~---l~~--~~~gs~ 309 (915)
.....+ .....+...+.......+.+|++|+++.-. ...+..... . +.. ...+.-
T Consensus 222 ----~~~~~g-----~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vi 292 (644)
T PRK10733 222 ----VEMFVG-----VGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGII 292 (644)
T ss_pred ----HHhhhc-----ccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCee
Confidence 111111 011223333333444578899999984310 011112222 1 221 123445
Q ss_pred EEEEcCchHHHhh--h---cCcCeEeCCCCCHHHHHHHHHHhHc
Q 038751 310 ILVTTRKETVARM--M---ESTDVISIKELSEQECWSLFKRFAF 348 (915)
Q Consensus 310 iivTtR~~~v~~~--~---~~~~~~~l~~L~~~~~~~lf~~~~~ 348 (915)
+|.||..++.... . .....+.+...+.++-.+++..+..
T Consensus 293 vIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~ 336 (644)
T PRK10733 293 VIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMR 336 (644)
T ss_pred EEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhh
Confidence 5557776553321 1 1245788888888888888877653
No 373
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=94.36 E-value=0.24 Score=49.54 Aligned_cols=22 Identities=23% Similarity=0.125 Sum_probs=20.2
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 038751 199 QIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
+++.|+|+.|.|||||.+.+..
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHH
Confidence 7899999999999999988865
No 374
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=94.36 E-value=0.76 Score=48.32 Aligned_cols=59 Identities=14% Similarity=0.048 Sum_probs=41.3
Q ss_pred cCeEEEEEeCCCCCCccChhhhHHhhhcCCCCceEEEEcCch-HHHhh-hcCcCeEeCCCC
Q 038751 276 EKKFFLILDDVWPDDYSKWEPFHNCLMNGLCGSRILVTTRKE-TVARM-MESTDVISIKEL 334 (915)
Q Consensus 276 ~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~-~~~~~~~~l~~L 334 (915)
++.-++|+|++.....+.++.+...+.....++.+|++|.+. .+... ......+.+.++
T Consensus 94 ~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~SRcq~~~~~~~ 154 (290)
T PRK05917 94 SPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSRSLSIHIPME 154 (290)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHhcceEEEccch
Confidence 555688999997777778899999998877788877777764 33322 233456666655
No 375
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.35 E-value=0.055 Score=49.57 Aligned_cols=40 Identities=23% Similarity=0.189 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcc
Q 038751 178 EEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 178 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
++.+++-+.|...-. .-.+|.+.|.-|+||||+++.+++.
T Consensus 6 ~~t~~l~~~l~~~l~----~~~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 6 KAMDKFGKAFAKPLD----FGTVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred HHHHHHHHHHHHhCC----CCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 344555555543211 3358999999999999999999885
No 376
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.35 E-value=0.1 Score=57.08 Aligned_cols=51 Identities=22% Similarity=0.259 Sum_probs=36.5
Q ss_pred CccccchHHHHHHHHHHhcc--------cccccCceEEEEEEecCCCcHHHHHHHHhcc
Q 038751 171 SDVRGRDEEKNILKRKLLCE--------SNEERNAVQIISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~--------~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
..++|.++.++.+.-.+... .....-..+-|.++|++|+|||++|+.+...
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~ 70 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKL 70 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 45889888888887666531 0001113467889999999999999999873
No 377
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.34 E-value=0.18 Score=55.99 Aligned_cols=88 Identities=18% Similarity=0.253 Sum_probs=46.1
Q ss_pred ceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCC-CCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHhc
Q 038751 197 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSD-PFDEFRIAKAIIEGLEGSLPNLRELNSLLEYIHTSIK 275 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 275 (915)
...+++++|+.|+||||++..+.........-+.+..++... .....+-+....+.++.......+..++...+.. ++
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~-l~ 268 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHE-LR 268 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHH-hc
Confidence 347999999999999999987765311112223344444332 1233333444444444433333333444333332 33
Q ss_pred cCeEEEEEeCC
Q 038751 276 EKKFFLILDDV 286 (915)
Q Consensus 276 ~k~~LlVlDdv 286 (915)
++ -++++|-.
T Consensus 269 ~~-d~VLIDTa 278 (420)
T PRK14721 269 GK-HMVLIDTV 278 (420)
T ss_pred CC-CEEEecCC
Confidence 33 35666765
No 378
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=94.32 E-value=0.4 Score=48.93 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=21.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcc
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
-.+++|+|+.|.|||||++.+..-
T Consensus 30 G~~~~i~G~nGsGKSTLl~~i~G~ 53 (220)
T cd03245 30 GEKVAIIGRVGSGKSTLLKLLAGL 53 (220)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999998763
No 379
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=94.28 E-value=0.41 Score=49.21 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=21.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
-.+++|+|+.|+|||||.+.++.
T Consensus 28 G~i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 28 GEITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 47899999999999999999977
No 380
>PRK06217 hypothetical protein; Validated
Probab=94.28 E-value=0.14 Score=50.51 Aligned_cols=22 Identities=32% Similarity=0.398 Sum_probs=20.0
Q ss_pred EEEEEecCCCcHHHHHHHHhcc
Q 038751 200 IISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
.|.|.|.+|+||||+|+.+.+.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999874
No 381
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=94.27 E-value=0.089 Score=55.99 Aligned_cols=83 Identities=20% Similarity=0.169 Sum_probs=49.9
Q ss_pred ceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhhCCCC-----CcccHHHHHHHHH
Q 038751 197 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLP-----NLRELNSLLEYIH 271 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 271 (915)
.-+++-|+|+.|+||||||..+... ....-..++||.....++.. .++.++.+.. .....++......
T Consensus 52 ~G~ivEi~G~~ssGKttLaL~~ia~--~q~~g~~~a~ID~e~~ld~~-----~a~~lGvdl~rllv~~P~~~E~al~~~e 124 (322)
T PF00154_consen 52 RGRIVEIYGPESSGKTTLALHAIAE--AQKQGGICAFIDAEHALDPE-----YAESLGVDLDRLLVVQPDTGEQALWIAE 124 (322)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH--HHHTT-EEEEEESSS---HH-----HHHHTT--GGGEEEEE-SSHHHHHHHHH
T ss_pred cCceEEEeCCCCCchhhhHHHHHHh--hhcccceeEEecCcccchhh-----HHHhcCccccceEEecCCcHHHHHHHHH
Confidence 3479999999999999999887763 33344578999998876653 3334443211 1123445555555
Q ss_pred HHhc-cCeEEEEEeCC
Q 038751 272 TSIK-EKKFFLILDDV 286 (915)
Q Consensus 272 ~~l~-~k~~LlVlDdv 286 (915)
..++ +..-++|+|-|
T Consensus 125 ~lirsg~~~lVVvDSv 140 (322)
T PF00154_consen 125 QLIRSGAVDLVVVDSV 140 (322)
T ss_dssp HHHHTTSESEEEEE-C
T ss_pred HHhhcccccEEEEecC
Confidence 5554 34458899988
No 382
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=94.26 E-value=0.14 Score=56.93 Aligned_cols=86 Identities=15% Similarity=0.084 Sum_probs=48.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhhCC------CCCcccHH-----HH
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGS------LPNLRELN-----SL 266 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~------~~~~~~~~-----~~ 266 (915)
-..++|+|..|+|||||++.+..... ....++|..-...-++.++....+...... ..+..... ..
T Consensus 165 Gqri~I~G~SGsGKTTLL~~Ia~l~~---pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~ 241 (450)
T PRK06002 165 GQRIGIFAGSGVGKSTLLAMLARADA---FDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLT 241 (450)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC---CCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHH
Confidence 35789999999999999998876321 223444443333445555444443332111 11111111 12
Q ss_pred HHHHHHHh--ccCeEEEEEeCC
Q 038751 267 LEYIHTSI--KEKKFFLILDDV 286 (915)
Q Consensus 267 ~~~l~~~l--~~k~~LlVlDdv 286 (915)
.-.+.+++ +++.+|+++||+
T Consensus 242 a~~iAEyfrd~G~~Vll~~Dsl 263 (450)
T PRK06002 242 ATAIAEYFRDRGENVLLIVDSV 263 (450)
T ss_pred HHHHHHHHHHcCCCEEEeccch
Confidence 22344444 588999999998
No 383
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.26 E-value=0.37 Score=49.75 Aligned_cols=54 Identities=17% Similarity=0.122 Sum_probs=33.2
Q ss_pred HHHHHhccCeEEEEEeCCCC-CCccChhhhHHhhhcCCCCceEEEEcCchHHHhh
Q 038751 269 YIHTSIKEKKFFLILDDVWP-DDYSKWEPFHNCLMNGLCGSRILVTTRKETVARM 322 (915)
Q Consensus 269 ~l~~~l~~k~~LlVlDdvw~-~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~ 322 (915)
.+.+.+-.++-+++||+... -+......+...+.....|..||++|.+......
T Consensus 147 ~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~ 201 (236)
T cd03253 147 AIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVN 201 (236)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHh
Confidence 34566667888999998743 2233344455555443336678888887765543
No 384
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.21 E-value=0.031 Score=58.76 Aligned_cols=97 Identities=25% Similarity=0.216 Sum_probs=47.6
Q ss_pred HHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhhCCCCC
Q 038751 180 KNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPN 259 (915)
Q Consensus 180 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~ 259 (915)
...+++.+... -+-+.++|+.|+|||++++....... ...| ...-++.+...+...++ .++++-.....+
T Consensus 22 ~~~ll~~l~~~-------~~pvLl~G~~GtGKT~li~~~l~~l~-~~~~-~~~~~~~s~~Tts~~~q-~~ie~~l~k~~~ 91 (272)
T PF12775_consen 22 YSYLLDLLLSN-------GRPVLLVGPSGTGKTSLIQNFLSSLD-SDKY-LVITINFSAQTTSNQLQ-KIIESKLEKRRG 91 (272)
T ss_dssp HHHHHHHHHHC-------TEEEEEESSTTSSHHHHHHHHHHCST-TCCE-EEEEEES-TTHHHHHHH-HCCCTTECECTT
T ss_pred HHHHHHHHHHc-------CCcEEEECCCCCchhHHHHhhhccCC-cccc-ceeEeeccCCCCHHHHH-HHHhhcEEcCCC
Confidence 34555555532 24468999999999999988776311 1111 23345555544333332 222211100000
Q ss_pred cccHHHHHHHHHHHhccCeEEEEEeCCCCCCccChh
Q 038751 260 LRELNSLLEYIHTSIKEKKFFLILDDVWPDDYSKWE 295 (915)
Q Consensus 260 ~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~ 295 (915)
. . ..--.+|+.++++||+--...+.|.
T Consensus 92 ~-~--------~gP~~~k~lv~fiDDlN~p~~d~yg 118 (272)
T PF12775_consen 92 R-V--------YGPPGGKKLVLFIDDLNMPQPDKYG 118 (272)
T ss_dssp E-E--------EEEESSSEEEEEEETTT-S---TTS
T ss_pred C-C--------CCCCCCcEEEEEecccCCCCCCCCC
Confidence 0 0 0001368899999999544444444
No 385
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=94.18 E-value=0.62 Score=50.26 Aligned_cols=21 Identities=33% Similarity=0.396 Sum_probs=18.6
Q ss_pred EEEEecCCCcHHHHHHHHhcc
Q 038751 201 ISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 201 i~I~G~gGiGKTtLa~~v~~~ 221 (915)
+.+.|++|.||||+++.+.+.
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~ 22 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSAT 22 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999998864
No 386
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.18 E-value=0.43 Score=49.04 Aligned_cols=53 Identities=15% Similarity=0.171 Sum_probs=31.8
Q ss_pred HHHHHhccCeEEEEEeCCCC-CCccChhhhHHhhhcCCCCceEEEEcCchHHHh
Q 038751 269 YIHTSIKEKKFFLILDDVWP-DDYSKWEPFHNCLMNGLCGSRILVTTRKETVAR 321 (915)
Q Consensus 269 ~l~~~l~~k~~LlVlDdvw~-~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~ 321 (915)
.|.+.+-.++-++++|+... -|....+.+...+.....|..||++|.+.....
T Consensus 149 ~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 202 (229)
T cd03254 149 AIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIK 202 (229)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHh
Confidence 34455667788999998743 222333344444444334667888887766554
No 387
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.17 E-value=0.061 Score=50.24 Aligned_cols=39 Identities=21% Similarity=0.260 Sum_probs=27.5
Q ss_pred EEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCC
Q 038751 199 QIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSD 238 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 238 (915)
++|.|+|..|+|||||++.+.+.. .+..+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l-~~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINEL-KRRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHH-HHTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH-hHcCCceEEEEEccC
Confidence 479999999999999999999852 234555555666655
No 388
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.17 E-value=0.0063 Score=70.66 Aligned_cols=40 Identities=15% Similarity=0.330 Sum_probs=23.3
Q ss_pred ccceeecccCccccCCC-cCCC-CCCCcCeEeEcCCcchhHh
Q 038751 848 HIKSLYITYCEKLKSLP-ELLL-RSTTLESLTIFGVPIVQES 887 (915)
Q Consensus 848 ~L~~L~l~~c~~L~~lp-~~l~-~l~~L~~L~l~~c~~l~~~ 887 (915)
.|+.|.+..|.....-- .... .+..+..+++.+|+.+...
T Consensus 402 ~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~ 443 (482)
T KOG1947|consen 402 SLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLK 443 (482)
T ss_pred ccceEecccCccccccchHHHhhhhhccccCCccCcccccch
Confidence 37778888776544211 0011 1566778888888776543
No 389
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.16 E-value=0.45 Score=48.25 Aligned_cols=24 Identities=29% Similarity=0.288 Sum_probs=21.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcc
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
-.+++|+|..|.|||||++.+...
T Consensus 37 Ge~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 37 GEALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 357999999999999999999764
No 390
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=94.16 E-value=0.24 Score=50.65 Aligned_cols=122 Identities=15% Similarity=0.129 Sum_probs=67.0
Q ss_pred EEEEEEecCCCcHHHHHHHHhcccc-----cc------cCC---CeEEEEEeCCCC------CH----------------
Q 038751 199 QIISLVGMGGIGKTTLAQFAYNDKD-----VI------ENF---DKRIWVCVSDPF------DE---------------- 242 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~~~-----~~------~~F---~~~~wv~vs~~~------~~---------------- 242 (915)
..++|+|+.|.|||||.+.+..-.. +. ..+ ..++||+-...+ .+
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~ 110 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFR 110 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccc
Confidence 6899999999999999999977211 00 001 245566421111 11
Q ss_pred ------HHHHHHHHHHhhCC-----CCCcccHHHHHH-HHHHHhccCeEEEEEeCCCC-CCccChhhhHHhhhc-CCCCc
Q 038751 243 ------FRIAKAIIEGLEGS-----LPNLRELNSLLE-YIHTSIKEKKFFLILDDVWP-DDYSKWEPFHNCLMN-GLCGS 308 (915)
Q Consensus 243 ------~~~~~~i~~~l~~~-----~~~~~~~~~~~~-~l~~~l~~k~~LlVlDdvw~-~~~~~~~~l~~~l~~-~~~gs 308 (915)
.+...+.++.++.. ....-+..+.++ .|.+.|..++=|++||.--. -|...-..+...+.. ...|.
T Consensus 111 ~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~ 190 (254)
T COG1121 111 RLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGK 190 (254)
T ss_pred cccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCC
Confidence 13333444444321 111222333433 45688889999999997532 122223334444443 12388
Q ss_pred eEEEEcCchHHH
Q 038751 309 RILVTTRKETVA 320 (915)
Q Consensus 309 ~iivTtR~~~v~ 320 (915)
-||++|-+-...
T Consensus 191 tIl~vtHDL~~v 202 (254)
T COG1121 191 TVLMVTHDLGLV 202 (254)
T ss_pred EEEEEeCCcHHh
Confidence 888888875433
No 391
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=94.11 E-value=0.33 Score=50.64 Aligned_cols=24 Identities=33% Similarity=0.538 Sum_probs=21.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcc
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
-.+++|+|..|.|||||++.++.-
T Consensus 30 Ge~~~I~G~NGsGKSTLl~~i~Gl 53 (251)
T PRK09544 30 GKILTLLGPNGAGKSTLVRVVLGL 53 (251)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999999864
No 392
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=94.10 E-value=0.091 Score=55.21 Aligned_cols=50 Identities=14% Similarity=0.171 Sum_probs=37.9
Q ss_pred CceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHH
Q 038751 196 NAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAI 249 (915)
Q Consensus 196 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 249 (915)
..-+++.|+|.+|+|||++|.++.. +...+...++||+..+ +...+.+.+
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~--~~~~~ge~vlyvs~~e--~~~~l~~~~ 70 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLY--EGAREGEPVLYVSTEE--SPEELLENA 70 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHH--HHHhcCCcEEEEEecC--CHHHHHHHH
Confidence 3568999999999999999988776 3445578899998887 344444443
No 393
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.09 E-value=0.29 Score=58.13 Aligned_cols=88 Identities=17% Similarity=0.177 Sum_probs=48.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCC-CCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHhcc
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSD-PFDEFRIAKAIIEGLEGSLPNLRELNSLLEYIHTSIKE 276 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 276 (915)
.+||.++|+.|+||||.+.++.........-..+..++... .....+.++...+.++.......+..++.+.+.+ +++
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~-~~~ 263 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAA-LGD 263 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHH-hcC
Confidence 47999999999999999888776321111112445554332 1224455555555555433333344555444443 333
Q ss_pred CeEEEEEeCCC
Q 038751 277 KKFFLILDDVW 287 (915)
Q Consensus 277 k~~LlVlDdvw 287 (915)
+ =+|++|-.-
T Consensus 264 ~-D~VLIDTAG 273 (767)
T PRK14723 264 K-HLVLIDTVG 273 (767)
T ss_pred C-CEEEEeCCC
Confidence 3 366667664
No 394
>PRK04040 adenylate kinase; Provisional
Probab=94.08 E-value=0.039 Score=54.52 Aligned_cols=22 Identities=32% Similarity=0.620 Sum_probs=20.6
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 038751 199 QIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
.+|.|+|++|+||||+++.+.+
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~ 24 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALE 24 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 6899999999999999999887
No 395
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.06 E-value=0.64 Score=47.93 Aligned_cols=54 Identities=15% Similarity=0.088 Sum_probs=32.2
Q ss_pred HHHHHhccCeEEEEEeCCCC-CCccChhhhHHhhhcCCCCceEEEEcCchHHHhh
Q 038751 269 YIHTSIKEKKFFLILDDVWP-DDYSKWEPFHNCLMNGLCGSRILVTTRKETVARM 322 (915)
Q Consensus 269 ~l~~~l~~k~~LlVlDdvw~-~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~ 322 (915)
.+.+.+-.++=+++||+.-. -|....+.+...+.....|..||++|.+......
T Consensus 148 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 202 (234)
T cd03251 148 AIARALLKDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIEN 202 (234)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh
Confidence 34455556777999998732 2233344455555443346678888887665543
No 396
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.05 E-value=0.54 Score=46.68 Aligned_cols=60 Identities=13% Similarity=0.089 Sum_probs=35.6
Q ss_pred HHHHHHhccCeEEEEEeCCCCCCccChhhh---HHhhhc-CCCCceEEEEcCchHHHhhhcCcCeE
Q 038751 268 EYIHTSIKEKKFFLILDDVWPDDYSKWEPF---HNCLMN-GLCGSRILVTTRKETVARMMESTDVI 329 (915)
Q Consensus 268 ~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l---~~~l~~-~~~gs~iivTtR~~~v~~~~~~~~~~ 329 (915)
..+.+.+-=++-+.|||...+ --+.+.+ ...+.. ...|+-+++.|-.+.++....+..++
T Consensus 153 ~EilQ~~~lePkl~ILDE~DS--GLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vh 216 (251)
T COG0396 153 NEILQLLLLEPKLAILDEPDS--GLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVH 216 (251)
T ss_pred HHHHHHHhcCCCEEEecCCCc--CccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEE
Confidence 344444445677999998843 2233333 222222 23577788888888888877554433
No 397
>PRK03839 putative kinase; Provisional
Probab=94.04 E-value=0.036 Score=54.60 Aligned_cols=22 Identities=36% Similarity=0.685 Sum_probs=20.0
Q ss_pred EEEEEecCCCcHHHHHHHHhcc
Q 038751 200 IISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
.|.|+|++|+||||+|+.+++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999884
No 398
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=94.03 E-value=0.26 Score=49.56 Aligned_cols=54 Identities=15% Similarity=0.116 Sum_probs=32.5
Q ss_pred HHHHHhccCeEEEEEeCCCC-CCccChh-hhHHhhhcCC-C-CceEEEEcCchHHHhh
Q 038751 269 YIHTSIKEKKFFLILDDVWP-DDYSKWE-PFHNCLMNGL-C-GSRILVTTRKETVARM 322 (915)
Q Consensus 269 ~l~~~l~~k~~LlVlDdvw~-~~~~~~~-~l~~~l~~~~-~-gs~iivTtR~~~v~~~ 322 (915)
.+.+.+..++-++++|+.-. -++.... .+...+.... . |..||++|.+......
T Consensus 131 ala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~ 188 (204)
T cd03240 131 ALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDA 188 (204)
T ss_pred HHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhh
Confidence 34566667888999999843 1222334 4545554432 2 5668888887766543
No 399
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=94.01 E-value=0.096 Score=53.75 Aligned_cols=86 Identities=23% Similarity=0.336 Sum_probs=51.5
Q ss_pred ceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhhCC---------------CCC--
Q 038751 197 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGS---------------LPN-- 259 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~---------------~~~-- 259 (915)
.-.++.|.|.+|+|||+||.++... ..+..=+.++||+.... ..++.+.+- .++-+ ...
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~-~~~~~ge~vlyvs~ee~--~~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~~~ 93 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYN-GLKNFGEKVLYVSFEEP--PEELIENMK-SFGWDLEEYEDSGKLKIIDAFPERI 93 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH-HHHHHT--EEEEESSS---HHHHHHHHH-TTTS-HHHHHHTTSEEEEESSGGGS
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHH-hhhhcCCcEEEEEecCC--HHHHHHHHH-HcCCcHHHHhhcCCEEEEecccccc
Confidence 4578999999999999999775542 12221245778887653 344444432 33211 001
Q ss_pred ---cccHHHHHHHHHHHhcc-CeEEEEEeCC
Q 038751 260 ---LRELNSLLEYIHTSIKE-KKFFLILDDV 286 (915)
Q Consensus 260 ---~~~~~~~~~~l~~~l~~-k~~LlVlDdv 286 (915)
..+.+.+...+.+.++. +...+|+|.+
T Consensus 94 ~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsl 124 (226)
T PF06745_consen 94 GWSPNDLEELLSKIREAIEELKPDRVVIDSL 124 (226)
T ss_dssp T-TSCCHHHHHHHHHHHHHHHTSSEEEEETH
T ss_pred cccccCHHHHHHHHHHHHHhcCCCEEEEECH
Confidence 23567777777776653 4579999986
No 400
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.01 E-value=0.86 Score=46.76 Aligned_cols=96 Identities=24% Similarity=0.359 Sum_probs=59.5
Q ss_pred CccccchHHHHHHHHHHhcccc------cccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHH
Q 038751 171 SDVRGRDEEKNILKRKLLCESN------EERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFR 244 (915)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 244 (915)
+++.|-+..++.+.+...-+-. +....-+-|.++|++|.||+.||++|+.... .. |.+||..
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAn--ST-----FFSvSSS----- 200 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEAN--ST-----FFSVSSS----- 200 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcC--Cc-----eEEeehH-----
Confidence 3577888888887776543211 1334568899999999999999999998532 22 2344432
Q ss_pred HHHHHHHHhhCCCCCcccHHHHHHHHHHHh-ccCeEEEEEeCCC
Q 038751 245 IAKAIIEGLEGSLPNLRELNSLLEYIHTSI-KEKKFFLILDDVW 287 (915)
Q Consensus 245 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdvw 287 (915)
+++....+ +.+.++..|.+.. .+|+-.|++|.+.
T Consensus 201 ---DLvSKWmG------ESEkLVknLFemARe~kPSIIFiDEiD 235 (439)
T KOG0739|consen 201 ---DLVSKWMG------ESEKLVKNLFEMARENKPSIIFIDEID 235 (439)
T ss_pred ---HHHHHHhc------cHHHHHHHHHHHHHhcCCcEEEeehhh
Confidence 12222212 1234555555444 4688899999884
No 401
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.00 E-value=0.47 Score=47.64 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=21.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcc
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
-.+++|+|..|+|||||++.+..-
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (202)
T cd03233 33 GEMVLVLGRPGSGCSTLLKALANR 56 (202)
T ss_pred CcEEEEECCCCCCHHHHHHHhccc
Confidence 368999999999999999998764
No 402
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.00 E-value=0.026 Score=50.75 Aligned_cols=27 Identities=37% Similarity=0.496 Sum_probs=18.5
Q ss_pred EEEEecCCCcHHHHHHHHhcccccccCCC
Q 038751 201 ISLVGMGGIGKTTLAQFAYNDKDVIENFD 229 (915)
Q Consensus 201 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~ 229 (915)
|.|+|.+|+||||+|+.+.. .....|.
T Consensus 2 vLleg~PG~GKT~la~~lA~--~~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALAR--SLGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHH--HTT--EE
T ss_pred EeeECCCccHHHHHHHHHHH--HcCCcee
Confidence 67999999999999999998 4556664
No 403
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.00 E-value=0.055 Score=55.14 Aligned_cols=20 Identities=40% Similarity=0.619 Sum_probs=18.8
Q ss_pred EEEEecCCCcHHHHHHHHhc
Q 038751 201 ISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 201 i~I~G~gGiGKTtLa~~v~~ 220 (915)
|.|.|++|+||||+|+.+.+
T Consensus 9 Ivl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 88999999999999999877
No 404
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=93.97 E-value=0.27 Score=54.60 Aligned_cols=50 Identities=28% Similarity=0.305 Sum_probs=34.7
Q ss_pred CccccchHHHHHHHHHHh----cc----cccc----cCceEEEEEEecCCCcHHHHHHHHhc
Q 038751 171 SDVRGRDEEKNILKRKLL----CE----SNEE----RNAVQIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~----~~----~~~~----~~~~~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
..++|.++.++.+...+. .. .... .-....|.++|++|+|||++|+.+..
T Consensus 77 ~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~ 138 (413)
T TIGR00382 77 EYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLAR 138 (413)
T ss_pred ceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHH
Confidence 458999988888766551 00 0000 01135789999999999999999986
No 405
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=93.96 E-value=0.14 Score=48.44 Aligned_cols=22 Identities=36% Similarity=0.578 Sum_probs=19.7
Q ss_pred EEEEEecCCCcHHHHHHHHhcc
Q 038751 200 IISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
||.|+|.+|+||||+|+.+...
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~ 22 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEK 22 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 5789999999999999998773
No 406
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=93.96 E-value=0.52 Score=48.19 Aligned_cols=52 Identities=13% Similarity=0.112 Sum_probs=31.4
Q ss_pred HHHHhccCeEEEEEeCCCC-CCccChhhhHHhhhcC-CCCceEEEEcCchHHHh
Q 038751 270 IHTSIKEKKFFLILDDVWP-DDYSKWEPFHNCLMNG-LCGSRILVTTRKETVAR 321 (915)
Q Consensus 270 l~~~l~~k~~LlVlDdvw~-~~~~~~~~l~~~l~~~-~~gs~iivTtR~~~v~~ 321 (915)
+.+.+-..+-++++|+.-. -|....+.+...+... ..|..||++|.+.....
T Consensus 135 laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~ 188 (223)
T TIGR03740 135 IAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQ 188 (223)
T ss_pred HHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHH
Confidence 4455566778999998732 2233344455544432 24667888888876553
No 407
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=93.96 E-value=0.09 Score=53.79 Aligned_cols=76 Identities=21% Similarity=0.310 Sum_probs=56.3
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH-hhcccccHHHHHHHHHHHHhhcchhhHHHHH
Q 038751 5 IVSPLLEQLISISYEEAKQQVRLVAGVGKQVKKLTSNLRAIQAVLNDA-EQRQVKEESVRLWLDQLKETSYDIDDVLDEW 83 (915)
Q Consensus 5 ~v~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~L~~~l~~i~~~l~~a-~~~~~~~~~~~~wl~~lr~~ayd~ed~ld~~ 83 (915)
.|..++.++-.+ .......+.-++.+++-++.+++.+|.||+.. +.....-+....++.++-..||++|+++|-+
T Consensus 297 yVdFlL~NLkdf----q~rysdSlaflKnQiqvIQ~elesLqpFLk~V~ee~~nkh~~~ed~a~~ii~kAyevEYVVDaC 372 (402)
T PF12061_consen 297 YVDFLLKNLKDF----QGRYSDSLAFLKNQIQVIQTELESLQPFLKHVVEEPHNKHDTNEDCATQIIRKAYEVEYVVDAC 372 (402)
T ss_pred HHHHHHhhHHHH----hccccchHHHHHHHHHHHHHHHHHhhHHHHHHHhccchhhhhhhhHHHHHHHHHhheeeeeehh
Confidence 455666666662 22223345567899999999999999999986 4433333448899999999999999999975
Q ss_pred H
Q 038751 84 I 84 (915)
Q Consensus 84 ~ 84 (915)
.
T Consensus 373 i 373 (402)
T PF12061_consen 373 I 373 (402)
T ss_pred h
Confidence 3
No 408
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=93.95 E-value=0.24 Score=49.34 Aligned_cols=41 Identities=24% Similarity=0.349 Sum_probs=26.6
Q ss_pred EEEEEEecCCCcHHHHHHHHhcccccccCC--------CeEEEEEeCCC
Q 038751 199 QIISLVGMGGIGKTTLAQFAYNDKDVIENF--------DKRIWVCVSDP 239 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--------~~~~wv~vs~~ 239 (915)
.++.|+|++|+||||++..+.........| ..+.|++....
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 478899999999999997776643322222 25677777664
No 409
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.95 E-value=0.16 Score=50.95 Aligned_cols=120 Identities=13% Similarity=0.175 Sum_probs=58.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHH---HHHHHHHh
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLRELNSL---LEYIHTSI 274 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~---~~~l~~~l 274 (915)
.+++.|.|+.|.||||+.+.+.... +..+. ..+|+... ..-.+...|...+.....-....... ...+...+
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~-~la~~--G~~vpa~~--~~l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~il 103 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLA-IMAQI--GCFVPAEY--ATLPIFNRLLSRLSNDDSMERNLSTFASEMSETAYIL 103 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HHHHc--CCCcchhh--cCccChhheeEecCCccccchhhhHHHHHHHHHHHHH
Confidence 3789999999999999998876431 11111 11111111 00122223333232211101111111 11122222
Q ss_pred --ccCeEEEEEeCCCCC-CccCh----hhhHHhhhcCCCCceEEEEcCchHHHhhhc
Q 038751 275 --KEKKFFLILDDVWPD-DYSKW----EPFHNCLMNGLCGSRILVTTRKETVARMME 324 (915)
Q Consensus 275 --~~k~~LlVlDdvw~~-~~~~~----~~l~~~l~~~~~gs~iivTtR~~~v~~~~~ 324 (915)
..++-|+++|+.... ++.+- ..+...+.. .|+.+|++|-..+.+..+.
T Consensus 104 ~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~--~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 104 DYADGDSLVLIDELGRGTSSADGFAISLAILECLIK--KESTVFFATHFRDIAAILG 158 (204)
T ss_pred HhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh--cCCEEEEECChHHHHHHhh
Confidence 356789999997431 11111 122222322 3789999999988877654
No 410
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=93.90 E-value=0.49 Score=49.29 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=21.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcc
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
-.+++|+|..|.|||||++.+..-
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (248)
T PRK09580 27 GEVHAIMGPNGSGKSTLSATLAGR 50 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCC
Confidence 358999999999999999998874
No 411
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=93.88 E-value=0.042 Score=54.53 Aligned_cols=24 Identities=33% Similarity=0.367 Sum_probs=21.7
Q ss_pred ceEEEEEEecCCCcHHHHHHHHhc
Q 038751 197 AVQIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
+.++|.|+|++|+||||+|+.+..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999886
No 412
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=93.87 E-value=0.13 Score=59.62 Aligned_cols=133 Identities=14% Similarity=0.083 Sum_probs=70.5
Q ss_pred CccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 038751 171 SDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAII 250 (915)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 250 (915)
.+++|....++++++.+..... .-.-|.|+|..|+||+++|+.+..... + .-...+.++++.-. ...+..
T Consensus 204 ~~~ig~s~~~~~~~~~~~~~A~----~~~pvlI~GE~GtGK~~lA~aiH~~s~-r-~~~pfv~inca~~~--~~~~e~-- 273 (520)
T PRK10820 204 SQIVAVSPKMRQVVEQARKLAM----LDAPLLITGDTGTGKDLLAYACHLRSP-R-GKKPFLALNCASIP--DDVVES-- 273 (520)
T ss_pred cceeECCHHHHHHHHHHHHHhC----CCCCEEEECCCCccHHHHHHHHHHhCC-C-CCCCeEEeccccCC--HHHHHH--
Confidence 4689998888888877754322 123378999999999999999865311 1 11122344444422 222222
Q ss_pred HHhhCCCCCc-cc-HHHHHHHHHHHhccCeEEEEEeCCCCCCccChhhhHHhhhcCC-----------CCceEEEEcCch
Q 038751 251 EGLEGSLPNL-RE-LNSLLEYIHTSIKEKKFFLILDDVWPDDYSKWEPFHNCLMNGL-----------CGSRILVTTRKE 317 (915)
Q Consensus 251 ~~l~~~~~~~-~~-~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iivTtR~~ 317 (915)
.+.+..++. .. .+.....+. ....=.|+||++..-.......+...+..+. ...|||.||...
T Consensus 274 -elFG~~~~~~~~~~~~~~g~~e---~a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~~ 349 (520)
T PRK10820 274 -ELFGHAPGAYPNALEGKKGFFE---QANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKN 349 (520)
T ss_pred -HhcCCCCCCcCCcccCCCChhh---hcCCCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCCC
Confidence 122211110 00 000000011 1122357899997655555566766665431 124788877654
No 413
>PRK04328 hypothetical protein; Provisional
Probab=93.83 E-value=0.17 Score=52.64 Aligned_cols=41 Identities=17% Similarity=0.290 Sum_probs=30.1
Q ss_pred ceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCC
Q 038751 197 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDP 239 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 239 (915)
.-.++.|.|.+|+|||+||.++... .. ..-..++|++....
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~-~~-~~ge~~lyis~ee~ 62 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWN-GL-QMGEPGVYVALEEH 62 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH-HH-hcCCcEEEEEeeCC
Confidence 4578999999999999999776543 12 22356788887763
No 414
>PRK15453 phosphoribulokinase; Provisional
Probab=93.83 E-value=0.28 Score=50.84 Aligned_cols=76 Identities=17% Similarity=0.085 Sum_probs=42.8
Q ss_pred ceEEEEEEecCCCcHHHHHHHHhcccccccCCC-eEEEEEeCCCC--CHHHHHHHHHH--Hhh--CCC--CCcccHHHHH
Q 038751 197 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENFD-KRIWVCVSDPF--DEFRIAKAIIE--GLE--GSL--PNLRELNSLL 267 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~--~~~~~~~~i~~--~l~--~~~--~~~~~~~~~~ 267 (915)
...+|+|.|.+|+||||+|+.+.+. .+ +.. ..+.++...-. +....-..+.. .-+ -+. ++..+.+.+.
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~i--f~-~~~~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf~PdAnd~dlL~ 80 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKI--FR-RENINAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHFGPEANLFDELE 80 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH--Hh-hcCCCeEEEecccccccChhhHhhhhHHHHhcCCCCCCCCCCcccHHHHH
Confidence 4579999999999999999988752 21 111 13333333222 33233222211 111 122 5566777788
Q ss_pred HHHHHHhc
Q 038751 268 EYIHTSIK 275 (915)
Q Consensus 268 ~~l~~~l~ 275 (915)
+.++.+.+
T Consensus 81 ~~l~~l~~ 88 (290)
T PRK15453 81 QLFREYGE 88 (290)
T ss_pred HHHHHHhc
Confidence 88877654
No 415
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.77 E-value=0.34 Score=54.81 Aligned_cols=88 Identities=14% Similarity=0.155 Sum_probs=45.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCC-CCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHhcc
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSD-PFDEFRIAKAIIEGLEGSLPNLRELNSLLEYIHTSIKE 276 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 276 (915)
.+|++++|+.|+||||++.+++.....+..-..+..|+... .....+-++...+.++.......+..+....+ ..+++
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL-~~L~d 334 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLAL-SELRN 334 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHH-HhccC
Confidence 47999999999999999988876322222122344554432 12233444444444443322222222222222 22333
Q ss_pred CeEEEEEeCCC
Q 038751 277 KKFFLILDDVW 287 (915)
Q Consensus 277 k~~LlVlDdvw 287 (915)
+ ..+++|-.-
T Consensus 335 ~-d~VLIDTaG 344 (484)
T PRK06995 335 K-HIVLIDTIG 344 (484)
T ss_pred C-CeEEeCCCC
Confidence 3 467777763
No 416
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=93.76 E-value=0.31 Score=47.54 Aligned_cols=119 Identities=15% Similarity=-0.014 Sum_probs=63.6
Q ss_pred ceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEe---CCCCCHHHHHHHHH--HHh--hCCC-----CCccc--
Q 038751 197 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCV---SDPFDEFRIAKAII--EGL--EGSL-----PNLRE-- 262 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v---s~~~~~~~~~~~i~--~~l--~~~~-----~~~~~-- 262 (915)
....|.|+|..|-||||.|..+.-. .....+. +..|-+ .........++.+- ... +... ....+
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~r-a~g~G~~-V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~ 98 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALR-AVGHGKK-VGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIA 98 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHH-HHHCCCe-EEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHH
Confidence 3468999999999999999555432 1112222 222222 22334444444320 000 0000 00011
Q ss_pred -HHHHHHHHHHHhcc-CeEEEEEeCCCC---CCccChhhhHHhhhcCCCCceEEEEcCch
Q 038751 263 -LNSLLEYIHTSIKE-KKFFLILDDVWP---DDYSKWEPFHNCLMNGLCGSRILVTTRKE 317 (915)
Q Consensus 263 -~~~~~~~l~~~l~~-k~~LlVlDdvw~---~~~~~~~~l~~~l~~~~~gs~iivTtR~~ 317 (915)
.....+..++.+.. +-=++|||.+-. ...-..+++...+.....+..||+|=|+.
T Consensus 99 ~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 99 AAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 12233344455544 445999999821 22234667777787777788999999975
No 417
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=93.76 E-value=0.83 Score=47.19 Aligned_cols=52 Identities=13% Similarity=0.253 Sum_probs=32.1
Q ss_pred HHHHhccCeEEEEEeCCCC-CCccChhhhHHhhhcCCCCceEEEEcCchHHHh
Q 038751 270 IHTSIKEKKFFLILDDVWP-DDYSKWEPFHNCLMNGLCGSRILVTTRKETVAR 321 (915)
Q Consensus 270 l~~~l~~k~~LlVlDdvw~-~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~ 321 (915)
+.+.+-.++-++++|+... -|......+...+.....|..||++|.+.....
T Consensus 149 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~ 201 (237)
T cd03252 149 IARALIHNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVK 201 (237)
T ss_pred HHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHH
Confidence 4455556778999999743 223334445555544334677888888876654
No 418
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=93.74 E-value=0.52 Score=48.14 Aligned_cols=23 Identities=35% Similarity=0.527 Sum_probs=21.0
Q ss_pred EEEEEEecCCCcHHHHHHHHhcc
Q 038751 199 QIISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
.+++|+|..|.|||||++.+..-
T Consensus 7 e~~~l~G~nGsGKSTLl~~l~G~ 29 (223)
T TIGR03771 7 ELLGLLGPNGAGKTTLLRAILGL 29 (223)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999998764
No 419
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=93.72 E-value=0.28 Score=57.55 Aligned_cols=53 Identities=19% Similarity=0.111 Sum_probs=31.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHhccccc-ccCCCeEEEEEeCCCCCHHHHHHHHH
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYNDKDV-IENFDKRIWVCVSDPFDEFRIAKAII 250 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F~~~~wv~vs~~~~~~~~~~~i~ 250 (915)
.++..|.|.+|.||||++..+...... ...=...+.+......-...+.+.+.
T Consensus 167 ~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~ 220 (615)
T PRK10875 167 RRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLG 220 (615)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHH
Confidence 368899999999999999887763111 11112355555554444444444443
No 420
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=93.72 E-value=0.23 Score=54.66 Aligned_cols=82 Identities=24% Similarity=0.238 Sum_probs=46.9
Q ss_pred ceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhhCCCCC-----cccHHHHHHHHH
Q 038751 197 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPN-----LRELNSLLEYIH 271 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~ 271 (915)
.-.++.|.|.+|+|||||+.+++... ...-..++|++.... ...+. .-++.++..... ..+.+.+.+.+.
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~--a~~g~~VlYvs~EEs--~~qi~-~Ra~rlg~~~~~l~l~~e~~le~I~~~i~ 155 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARL--AKRGGKVLYVSGEES--PEQIK-LRADRLGISTENLYLLAETNLEDILASIE 155 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH--HhcCCeEEEEECCcC--HHHHH-HHHHHcCCCcccEEEEccCcHHHHHHHHH
Confidence 34789999999999999998887632 222245778776543 22222 223344332111 123344433332
Q ss_pred HHhccCeEEEEEeCC
Q 038751 272 TSIKEKKFFLILDDV 286 (915)
Q Consensus 272 ~~l~~k~~LlVlDdv 286 (915)
..+.-+||+|.+
T Consensus 156 ---~~~~~lVVIDSI 167 (372)
T cd01121 156 ---ELKPDLVIIDSI 167 (372)
T ss_pred ---hcCCcEEEEcch
Confidence 235667888887
No 421
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.71 E-value=0.39 Score=50.17 Aligned_cols=89 Identities=13% Similarity=0.135 Sum_probs=46.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCC-CHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHhc-
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPF-DEFRIAKAIIEGLEGSLPNLRELNSLLEYIHTSIK- 275 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~- 275 (915)
..+++++|.+|+||||+++.+.... ...=..+.+++..... ....-++...+.++.......+.+.+.+.+...-+
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l--~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~ 152 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQF--HGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEE 152 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHH--HHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhc
Confidence 3689999999999999998876532 1111235555554221 12222233333332221222344445444443322
Q ss_pred cCeEEEEEeCCCC
Q 038751 276 EKKFFLILDDVWP 288 (915)
Q Consensus 276 ~k~~LlVlDdvw~ 288 (915)
.+.=++++|..-.
T Consensus 153 ~~~D~ViIDt~Gr 165 (270)
T PRK06731 153 ARVDYILIDTAGK 165 (270)
T ss_pred CCCCEEEEECCCC
Confidence 2445888898754
No 422
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=93.69 E-value=0.1 Score=51.42 Aligned_cols=42 Identities=33% Similarity=0.384 Sum_probs=30.8
Q ss_pred CccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhc
Q 038751 171 SDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
++++|-+..+..+.-.... .+-+.++|.+|+|||++|+.+-.
T Consensus 3 ~dI~GQe~aKrAL~iAAaG--------~h~lLl~GppGtGKTmlA~~l~~ 44 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAAG--------GHHLLLIGPPGTGKTMLARRLPS 44 (206)
T ss_dssp CCSSSTHHHHHHHHHHHHC--------C--EEEES-CCCTHHHHHHHHHH
T ss_pred hhhcCcHHHHHHHHHHHcC--------CCCeEEECCCCCCHHHHHHHHHH
Confidence 4688988777777665543 24688999999999999998854
No 423
>PRK00625 shikimate kinase; Provisional
Probab=93.68 E-value=0.044 Score=53.22 Aligned_cols=21 Identities=29% Similarity=0.414 Sum_probs=19.2
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 038751 200 IISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~ 220 (915)
.|.++|++|+||||+++.+.+
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999977
No 424
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=93.66 E-value=0.12 Score=56.50 Aligned_cols=101 Identities=16% Similarity=0.145 Sum_probs=54.9
Q ss_pred ceEEEEEEecCCCcHHHHHHHHhcccccc----cCCCeEEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHH
Q 038751 197 AVQIISLVGMGGIGKTTLAQFAYNDKDVI----ENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLRELNSLLEYIHT 272 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~ 272 (915)
..+=+-|||..|.|||.|+-.+|+...++ -||. ....++-+.+..-...... ...+.+
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh--------------~Fm~~vh~~l~~~~~~~~~----l~~va~ 122 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFH--------------EFMLDVHSRLHQLRGQDDP----LPQVAD 122 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCCcccccccccc--------------HHHHHHHHHHHHHhCCCcc----HHHHHH
Confidence 45779999999999999999999864332 2332 2333333333221111111 223344
Q ss_pred HhccCeEEEEEeCCCCCCccChhhhHHhhhc-CCCCceEEEEcC
Q 038751 273 SIKEKKFFLILDDVWPDDYSKWEPFHNCLMN-GLCGSRILVTTR 315 (915)
Q Consensus 273 ~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~-~~~gs~iivTtR 315 (915)
.+.++..||.||+..-.+..+---+...|.. ...|..+|.||-
T Consensus 123 ~l~~~~~lLcfDEF~V~DiaDAmil~rLf~~l~~~gvvlVaTSN 166 (362)
T PF03969_consen 123 ELAKESRLLCFDEFQVTDIADAMILKRLFEALFKRGVVLVATSN 166 (362)
T ss_pred HHHhcCCEEEEeeeeccchhHHHHHHHHHHHHHHCCCEEEecCC
Confidence 5556667999999865544332223333332 245654544444
No 425
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=93.64 E-value=0.14 Score=56.01 Aligned_cols=51 Identities=22% Similarity=0.294 Sum_probs=37.1
Q ss_pred CccccchHHHHHHHHHHhcc-------cc-cccCceEEEEEEecCCCcHHHHHHHHhcc
Q 038751 171 SDVRGRDEEKNILKRKLLCE-------SN-EERNAVQIISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~-------~~-~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
..++|.++.++.+..++... .. ...-..+.|.++|++|+|||++|+.+...
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~ 73 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKL 73 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 45889999888888877531 00 00112467899999999999999998873
No 426
>PF13479 AAA_24: AAA domain
Probab=93.63 E-value=0.19 Score=50.87 Aligned_cols=20 Identities=45% Similarity=0.401 Sum_probs=17.9
Q ss_pred EEEEEEecCCCcHHHHHHHH
Q 038751 199 QIISLVGMGGIGKTTLAQFA 218 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v 218 (915)
-.+.|+|.+|+||||+|..+
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred eEEEEECCCCCCHHHHHHhC
Confidence 45789999999999999876
No 427
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=93.63 E-value=0.16 Score=51.01 Aligned_cols=96 Identities=18% Similarity=0.149 Sum_probs=55.0
Q ss_pred HHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCC-CCHHHHHHHHHHHhhCC----
Q 038751 182 ILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDP-FDEFRIAKAIIEGLEGS---- 256 (915)
Q Consensus 182 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~---- 256 (915)
+.++.|..-. .-..+.|.|.+|+|||+|++.+.+.. .-+..+++.+++. ....++.+++...-...
T Consensus 4 r~ID~l~Pig-----~Gqr~~I~g~~g~GKt~Ll~~i~~~~----~~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~v 74 (215)
T PF00006_consen 4 RAIDLLFPIG-----RGQRIGIFGGAGVGKTVLLQEIANNQ----DADVVVYALIGERGREVTEFIEELKGEGALERTVV 74 (215)
T ss_dssp HHHHHHSCEE-----TTSEEEEEESTTSSHHHHHHHHHHHC----TTTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEE
T ss_pred ceeccccccc-----cCCEEEEEcCcccccchhhHHHHhcc----cccceeeeeccccchhHHHHHHHHhhccccccccc
Confidence 3455555432 12468899999999999999988753 2244577878765 34455555553321110
Q ss_pred ---CCCcccHHH-----HHHHHHHHh--ccCeEEEEEeCC
Q 038751 257 ---LPNLRELNS-----LLEYIHTSI--KEKKFFLILDDV 286 (915)
Q Consensus 257 ---~~~~~~~~~-----~~~~l~~~l--~~k~~LlVlDdv 286 (915)
..+...... ..-.+.+++ +++..|+++||+
T Consensus 75 v~~t~~~~~~~r~~~~~~a~t~AEyfrd~G~dVlli~Dsl 114 (215)
T PF00006_consen 75 VAATSDEPPAARYRAPYTALTIAEYFRDQGKDVLLIIDSL 114 (215)
T ss_dssp EEEETTS-HHHHHHHHHHHHHHHHHHHHTTSEEEEEEETH
T ss_pred ccccchhhHHHHhhhhccchhhhHHHhhcCCceeehhhhh
Confidence 111111111 112223333 689999999998
No 428
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=93.62 E-value=0.23 Score=51.98 Aligned_cols=40 Identities=18% Similarity=0.282 Sum_probs=29.4
Q ss_pred ceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCC
Q 038751 197 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSD 238 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 238 (915)
.-+++.|.|.+|+|||++|.++.... .+ .=..+++++...
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~-a~-~Ge~vlyis~Ee 74 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQ-AS-RGNPVLFVTVES 74 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH-Hh-CCCcEEEEEecC
Confidence 45789999999999999998765431 12 234678888864
No 429
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=93.60 E-value=0.19 Score=48.60 Aligned_cols=22 Identities=41% Similarity=0.495 Sum_probs=19.7
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 038751 199 QIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
+.|.+.|.+|+||||+|+++..
T Consensus 2 pLiIlTGyPgsGKTtfakeLak 23 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAK 23 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHH
Confidence 4578999999999999999887
No 430
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=93.58 E-value=0.041 Score=55.14 Aligned_cols=21 Identities=43% Similarity=0.569 Sum_probs=19.4
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 038751 200 IISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~ 220 (915)
+|+|.|.+|+||||||+.+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999876
No 431
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.57 E-value=0.05 Score=53.50 Aligned_cols=23 Identities=39% Similarity=0.625 Sum_probs=20.4
Q ss_pred EEEEEEecCCCcHHHHHHHHhcc
Q 038751 199 QIISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
.++.|+|++|+||||+++.+...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999998763
No 432
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=93.56 E-value=1.6 Score=45.99 Aligned_cols=69 Identities=14% Similarity=0.138 Sum_probs=48.7
Q ss_pred cCeEEEEEeCCCCCCccChhhhHHhhhcCCCCceEEEEcCch-HHHhh-hcCcCeEeCCCCCHHHHHHHHHH
Q 038751 276 EKKFFLILDDVWPDDYSKWEPFHNCLMNGLCGSRILVTTRKE-TVARM-MESTDVISIKELSEQECWSLFKR 345 (915)
Q Consensus 276 ~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~-~~~~~~~~l~~L~~~~~~~lf~~ 345 (915)
+++-++|+||+........+.+...+.....++.+|++|.+. .+... ......+++.+ +.++..+.+..
T Consensus 103 ~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRcq~i~f~~-~~~~~~~~L~~ 173 (290)
T PRK07276 103 GKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHFPK-NEAYLIQLLEQ 173 (290)
T ss_pred CCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcceeeeCCC-cHHHHHHHHHH
Confidence 566689999997777778888999888877778777777664 33332 23356777866 66666666654
No 433
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=93.51 E-value=0.13 Score=52.24 Aligned_cols=39 Identities=26% Similarity=0.406 Sum_probs=28.8
Q ss_pred HHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcc
Q 038751 179 EKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 179 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
+..++++.+.... ++..+|+|.|++|+|||||...+...
T Consensus 14 ~~~~ll~~l~~~~----g~a~~iGiTG~PGaGKSTli~~l~~~ 52 (266)
T PF03308_consen 14 EARELLKRLYPHT----GRAHVIGITGPPGAGKSTLIDALIRE 52 (266)
T ss_dssp HHHHHHHHHGGGT----T-SEEEEEEE-TTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhc----CCceEEEeeCCCCCcHHHHHHHHHHH
Confidence 5666777776542 36789999999999999999877664
No 434
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=93.51 E-value=0.31 Score=54.23 Aligned_cols=85 Identities=16% Similarity=0.227 Sum_probs=50.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCC-CCHHHHHHHHHHHhhCC-------CCCcccHHH----
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDP-FDEFRIAKAIIEGLEGS-------LPNLRELNS---- 265 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~-------~~~~~~~~~---- 265 (915)
-..++|+|..|+|||||++.+.+.. +.+..+++.+++. ..+.+++.+....-... ..+......
T Consensus 155 GqrigI~G~sG~GKSTLL~~I~~~~----~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~a~ 230 (433)
T PRK07594 155 GQRVGIFSAPGVGKSTLLAMLCNAP----DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRAL 230 (433)
T ss_pred CCEEEEECCCCCCccHHHHHhcCCC----CCCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHHHH
Confidence 3578999999999999999988742 3455666666554 33445555543211000 111111111
Q ss_pred -HHHHHHHHh--ccCeEEEEEeCC
Q 038751 266 -LLEYIHTSI--KEKKFFLILDDV 286 (915)
Q Consensus 266 -~~~~l~~~l--~~k~~LlVlDdv 286 (915)
..-.+.+++ +++++|+++||+
T Consensus 231 ~~a~tiAEyfrd~G~~VLl~~Dsl 254 (433)
T PRK07594 231 FVATTIAEFFRDNGKRVVLLADSL 254 (433)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeCH
Confidence 122344555 588999999999
No 435
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=93.49 E-value=0.45 Score=57.31 Aligned_cols=131 Identities=15% Similarity=0.163 Sum_probs=75.1
Q ss_pred HHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhhCCC
Q 038751 178 EEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSL 257 (915)
Q Consensus 178 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~ 257 (915)
..+.+|.+.+. +..|+.|+|..|.||||-.-+++-+.-. .....+=++-........+.+.+.++++...
T Consensus 53 ~~~~~i~~ai~--------~~~vvii~getGsGKTTqlP~~lle~g~--~~~g~I~~tQPRRlAArsvA~RvAeel~~~~ 122 (845)
T COG1643 53 AVRDEILKAIE--------QNQVVIIVGETGSGKTTQLPQFLLEEGL--GIAGKIGCTQPRRLAARSVAERVAEELGEKL 122 (845)
T ss_pred HHHHHHHHHHH--------hCCEEEEeCCCCCChHHHHHHHHHhhhc--ccCCeEEecCchHHHHHHHHHHHHHHhCCCc
Confidence 46778888875 3478999999999999998666553221 1122333333333455677888888887542
Q ss_pred CC-------------------cccHHHHHHHHH-HHhccCeEEEEEeCCCCCCccChhhhHHhhhc---C-CCCceEEEE
Q 038751 258 PN-------------------LRELNSLLEYIH-TSIKEKKFFLILDDVWPDDYSKWEPFHNCLMN---G-LCGSRILVT 313 (915)
Q Consensus 258 ~~-------------------~~~~~~~~~~l~-~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~---~-~~gs~iivT 313 (915)
.+ ......+...+. ..+-.+=-.||+|.+++.+ -+-|-+...+.. . ...-||||+
T Consensus 123 G~~VGY~iRfe~~~s~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERS-l~tDilLgllk~~~~~rr~DLKiIim 201 (845)
T COG1643 123 GETVGYSIRFESKVSPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHERS-LNTDILLGLLKDLLARRRDDLKLIIM 201 (845)
T ss_pred CceeeEEEEeeccCCCCceeEEeccHHHHHHHhhCcccccCCEEEEcchhhhh-HHHHHHHHHHHHHHhhcCCCceEEEE
Confidence 21 122233444433 2222344489999997543 222333333322 2 234899999
Q ss_pred cCchHH
Q 038751 314 TRKETV 319 (915)
Q Consensus 314 tR~~~v 319 (915)
|-.-+.
T Consensus 202 SATld~ 207 (845)
T COG1643 202 SATLDA 207 (845)
T ss_pred ecccCH
Confidence 986443
No 436
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=93.48 E-value=0.32 Score=50.45 Aligned_cols=88 Identities=17% Similarity=0.133 Sum_probs=54.4
Q ss_pred EEEEEEecCCCcHHHHHHHHhccccc--ccCCCeEEEEEeCCCC-CHHHHHHHHHHHhhCC-------CCCcccHH----
Q 038751 199 QIISLVGMGGIGKTTLAQFAYNDKDV--IENFDKRIWVCVSDPF-DEFRIAKAIIEGLEGS-------LPNLRELN---- 264 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~~~~--~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~---- 264 (915)
+.++|.|-.|+|||+|+..+.++... +++-+.++++-+++.. +..++..++...-... ..+.....
T Consensus 70 QR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~a 149 (276)
T cd01135 70 QKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERIIT 149 (276)
T ss_pred CEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHHH
Confidence 45799999999999999888775321 2234678888888764 4455666554432111 01111111
Q ss_pred -HHHHHHHHHh--c-cCeEEEEEeCC
Q 038751 265 -SLLEYIHTSI--K-EKKFFLILDDV 286 (915)
Q Consensus 265 -~~~~~l~~~l--~-~k~~LlVlDdv 286 (915)
...-.+.+++ + ++++|+++||+
T Consensus 150 ~~~a~aiAEyfrd~~g~~VLl~~D~l 175 (276)
T cd01135 150 PRMALTTAEYLAYEKGKHVLVILTDM 175 (276)
T ss_pred HHHHHHHHHHHHhccCCeEEEEEcCh
Confidence 1223345555 2 78999999998
No 437
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=93.47 E-value=0.066 Score=51.58 Aligned_cols=25 Identities=24% Similarity=0.407 Sum_probs=22.3
Q ss_pred ceEEEEEEecCCCcHHHHHHHHhcc
Q 038751 197 AVQIISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
...+++|+|..|+|||||++.+...
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 4679999999999999999998874
No 438
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=93.45 E-value=0.067 Score=64.62 Aligned_cols=24 Identities=17% Similarity=0.134 Sum_probs=21.0
Q ss_pred ceEEEEEEecCCCcHHHHHHHHhc
Q 038751 197 AVQIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
+.+++.|+|+.|.||||+.+.+..
T Consensus 321 ~~~~liItGpNg~GKSTlLK~i~~ 344 (771)
T TIGR01069 321 EKRVLAITGPNTGGKTVTLKTLGL 344 (771)
T ss_pred CceEEEEECCCCCCchHHHHHHHH
Confidence 347899999999999999988865
No 439
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=93.44 E-value=0.28 Score=54.92 Aligned_cols=87 Identities=18% Similarity=0.132 Sum_probs=52.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCC-CHHHHHHHHHHHhhCC-------CCCcccHH-----H
Q 038751 199 QIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPF-DEFRIAKAIIEGLEGS-------LPNLRELN-----S 265 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~-----~ 265 (915)
+.++|.|.+|+|||||+..+...... .+=+.++++-+++.. .+.++.+++...-... ..+..... .
T Consensus 145 QR~gIfa~~GvGKt~Ll~~i~~~~~~-~~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~~ 223 (463)
T PRK09280 145 GKIGLFGGAGVGKTVLIQELINNIAK-EHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVAL 223 (463)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHHh-cCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHH
Confidence 56899999999999999887653221 111457777776654 4455666655432111 11111111 1
Q ss_pred HHHHHHHHh---ccCeEEEEEeCC
Q 038751 266 LLEYIHTSI---KEKKFFLILDDV 286 (915)
Q Consensus 266 ~~~~l~~~l---~~k~~LlVlDdv 286 (915)
..-.+.+++ +++++||++||+
T Consensus 224 ~a~tiAEyfrd~~G~~VLll~Dsl 247 (463)
T PRK09280 224 TGLTMAEYFRDVEGQDVLLFIDNI 247 (463)
T ss_pred HHHHHHHHHHHhcCCceEEEecch
Confidence 223355665 679999999998
No 440
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=93.43 E-value=1.1 Score=45.01 Aligned_cols=24 Identities=25% Similarity=0.455 Sum_probs=21.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcc
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
-.+++|+|..|.|||||++.+..-
T Consensus 31 G~~~~i~G~nG~GKSTLl~~i~G~ 54 (204)
T cd03250 31 GELVAIVGPVGSGKSSLLSALLGE 54 (204)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCc
Confidence 368999999999999999998774
No 441
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=93.43 E-value=0.046 Score=53.65 Aligned_cols=22 Identities=36% Similarity=0.505 Sum_probs=19.9
Q ss_pred EEEEEecCCCcHHHHHHHHhcc
Q 038751 200 IISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
+|+|.|.+|+||||+|+.+...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999873
No 442
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=93.41 E-value=0.24 Score=54.91 Aligned_cols=85 Identities=15% Similarity=0.130 Sum_probs=51.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCC-HHHHHHHHHHHhhCC-------CCCcccHH-----
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFD-EFRIAKAIIEGLEGS-------LPNLRELN----- 264 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~i~~~l~~~-------~~~~~~~~----- 264 (915)
-..++|+|..|+|||||++.+.+.. ..+.++.+-+++... +.++.+.++..-... ..+.....
T Consensus 162 GqrigI~G~sG~GKSTLL~~I~~~~----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~ 237 (444)
T PRK08972 162 GQRMGLFAGSGVGKSVLLGMMTRGT----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGC 237 (444)
T ss_pred CCEEEEECCCCCChhHHHHHhccCC----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHH
Confidence 3578999999999999999998632 225566666766543 344555544331111 11111111
Q ss_pred HHHHHHHHHh--ccCeEEEEEeCC
Q 038751 265 SLLEYIHTSI--KEKKFFLILDDV 286 (915)
Q Consensus 265 ~~~~~l~~~l--~~k~~LlVlDdv 286 (915)
...-.+.+++ +++++|+++||+
T Consensus 238 ~~A~tiAEyfrd~G~~VLl~~Dsl 261 (444)
T PRK08972 238 ETATTIAEYFRDQGLNVLLLMDSL 261 (444)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcCh
Confidence 1122344555 589999999998
No 443
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=93.40 E-value=0.61 Score=52.98 Aligned_cols=116 Identities=22% Similarity=0.299 Sum_probs=66.6
Q ss_pred eEEEEEEecCCCcHHH-HHHHHhcccccccCCCeEEEEEeCCCCCH--HHHHHHHHHHhhCCCCC----------c----
Q 038751 198 VQIISLVGMGGIGKTT-LAQFAYNDKDVIENFDKRIWVCVSDPFDE--FRIAKAIIEGLEGSLPN----------L---- 260 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTt-La~~v~~~~~~~~~F~~~~wv~vs~~~~~--~~~~~~i~~~l~~~~~~----------~---- 260 (915)
-.||.|||..|.|||| |||.+|.+ .|...-.|-+.|+-.+ ..+.+.+.+.+++.... .
T Consensus 371 n~vvvivgETGSGKTTQl~QyL~ed-----GY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGYsIRFEdvT~~~ 445 (1042)
T KOG0924|consen 371 NQVVVIVGETGSGKTTQLAQYLYED-----GYADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGYSIRFEDVTSED 445 (1042)
T ss_pred CcEEEEEecCCCCchhhhHHHHHhc-----ccccCCeeeecCchHHHHHHHHHHHHHHhCCccccccceEEEeeecCCCc
Confidence 4789999999999986 66888874 2322224455555443 45667777777543211 1
Q ss_pred ------ccHHHHHHHHHHHhccCeEEEEEeCCCCCCccChhhhHHhhh---cCCCCceEEEEcCchHH
Q 038751 261 ------RELNSLLEYIHTSIKEKKFFLILDDVWPDDYSKWEPFHNCLM---NGLCGSRILVTTRKETV 319 (915)
Q Consensus 261 ------~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~---~~~~gs~iivTtR~~~v 319 (915)
.+.--+.+.|.+..-.|--.||+|.+++.. ..-+.+...+. .....-|+||||-..+.
T Consensus 446 T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERs-lNtDilfGllk~~larRrdlKliVtSATm~a 512 (1042)
T KOG0924|consen 446 TKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERS-LNTDILFGLLKKVLARRRDLKLIVTSATMDA 512 (1042)
T ss_pred eeEEEeccchHHHHHhhhhhhhheeEEEechhhhcc-cchHHHHHHHHHHHHhhccceEEEeeccccH
Confidence 111222333333333455689999997532 23333333333 23457799999986543
No 444
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=93.37 E-value=0.31 Score=51.03 Aligned_cols=27 Identities=30% Similarity=0.303 Sum_probs=23.8
Q ss_pred cCceEEEEEEecCCCcHHHHHHHHhcc
Q 038751 195 RNAVQIISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 195 ~~~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
..+..+|.|+|.+|.|||||+..+.+.
T Consensus 101 ~~~~~~v~l~G~pGsGKTTLl~~l~~~ 127 (290)
T PRK10463 101 ARKQLVLNLVSSPGSGKTTLLTETLMR 127 (290)
T ss_pred hcCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999999988873
No 445
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=93.37 E-value=0.19 Score=59.22 Aligned_cols=74 Identities=18% Similarity=0.228 Sum_probs=49.2
Q ss_pred CccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhccccccc-CCCeEEEEEeCCCCCHHHHHHHH
Q 038751 171 SDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIE-NFDKRIWVCVSDPFDEFRIAKAI 249 (915)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F~~~~wv~vs~~~~~~~~~~~i 249 (915)
++++|.++.++.+...+... +-+.++|++|+||||+|+.+.+. ... .|...+++ .....+...+++.+
T Consensus 18 ~~viG~~~a~~~l~~a~~~~--------~~~ll~G~pG~GKT~la~~la~~--l~~~~~~~~~~~-~n~~~~~~~~~~~v 86 (608)
T TIGR00764 18 DQVIGQEEAVEIIKKAAKQK--------RNVLLIGEPGVGKSMLAKAMAEL--LPDEELEDILVY-PNPEDPNMPRIVEV 86 (608)
T ss_pred hhccCHHHHHHHHHHHHHcC--------CCEEEECCCCCCHHHHHHHHHHH--cCchhheeEEEE-eCCCCCchHHHHHH
Confidence 46889988888777777532 24569999999999999999873 322 33333332 22234555667777
Q ss_pred HHHhhC
Q 038751 250 IEGLEG 255 (915)
Q Consensus 250 ~~~l~~ 255 (915)
..+++.
T Consensus 87 ~~~~g~ 92 (608)
T TIGR00764 87 PAGEGR 92 (608)
T ss_pred HHhhch
Confidence 776654
No 446
>PRK08149 ATP synthase SpaL; Validated
Probab=93.36 E-value=0.3 Score=54.25 Aligned_cols=85 Identities=12% Similarity=0.209 Sum_probs=50.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCC-CCHHHHHHHHHHHhhCC-------CCCcccHH-----
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDP-FDEFRIAKAIIEGLEGS-------LPNLRELN----- 264 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~-------~~~~~~~~----- 264 (915)
-..++|+|..|+|||||++.+++... -+.++...+... .++.++........... ..+.....
T Consensus 151 Gq~i~I~G~sG~GKTTLl~~i~~~~~----~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a~ 226 (428)
T PRK08149 151 GQRMGIFASAGCGKTSLMNMLIEHSE----ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNAA 226 (428)
T ss_pred CCEEEEECCCCCChhHHHHHHhcCCC----CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhHH
Confidence 35789999999999999999987422 233333444433 34555655555533211 11111111
Q ss_pred HHHHHHHHHh--ccCeEEEEEeCC
Q 038751 265 SLLEYIHTSI--KEKKFFLILDDV 286 (915)
Q Consensus 265 ~~~~~l~~~l--~~k~~LlVlDdv 286 (915)
.....+.+++ +++++||++||+
T Consensus 227 ~~a~tiAE~fr~~G~~Vll~~Dsl 250 (428)
T PRK08149 227 LVATTVAEYFRDQGKRVVLFIDSM 250 (428)
T ss_pred HHHHHHHHHHHHcCCCEEEEccch
Confidence 1223344444 589999999998
No 447
>PRK00131 aroK shikimate kinase; Reviewed
Probab=93.35 E-value=0.056 Score=52.83 Aligned_cols=24 Identities=29% Similarity=0.445 Sum_probs=21.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcc
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
...|.|+|++|+||||+|+.+...
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~ 27 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKR 27 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Confidence 458999999999999999999873
No 448
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=93.34 E-value=0.2 Score=56.18 Aligned_cols=87 Identities=15% Similarity=0.117 Sum_probs=54.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCC-CHHHHHHHHHHHhhCC-------CCCcccHH-----H
Q 038751 199 QIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPF-DEFRIAKAIIEGLEGS-------LPNLRELN-----S 265 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~-----~ 265 (915)
+.++|.|.+|+|||||+..+.+... +.+-+.++++-+++.. .+.++...+...-... ..+..... .
T Consensus 144 QR~gIfa~~G~GKt~Ll~~~~~~~~-~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~~ 222 (461)
T PRK12597 144 GKTGLFGGAGVGKTVLMMELIFNIS-KQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVVL 222 (461)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHH-hhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHHH
Confidence 5689999999999999988777432 2355778888777654 3455555554322111 11111111 2
Q ss_pred HHHHHHHHh---ccCeEEEEEeCC
Q 038751 266 LLEYIHTSI---KEKKFFLILDDV 286 (915)
Q Consensus 266 ~~~~l~~~l---~~k~~LlVlDdv 286 (915)
....+.+++ +++++|+++||+
T Consensus 223 ~a~tiAEyfrd~~G~~VLl~~Dsl 246 (461)
T PRK12597 223 TGLTIAEYLRDEEKEDVLLFIDNI 246 (461)
T ss_pred HHHHHHHHHHHhcCCceEEEeccc
Confidence 233455666 379999999999
No 449
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=93.32 E-value=0.048 Score=53.84 Aligned_cols=21 Identities=24% Similarity=0.301 Sum_probs=19.4
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 038751 200 IISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~ 220 (915)
||.|+|++|+||||+|+.+..
T Consensus 1 ~i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999877
No 450
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=93.32 E-value=1.1 Score=43.22 Aligned_cols=54 Identities=15% Similarity=0.119 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhccCeEEEEEeCCCCC-CccChhhhHHhhh-cCCCCceEEEEcCch
Q 038751 264 NSLLEYIHTSIKEKKFFLILDDVWPD-DYSKWEPFHNCLM-NGLCGSRILVTTRKE 317 (915)
Q Consensus 264 ~~~~~~l~~~l~~k~~LlVlDdvw~~-~~~~~~~l~~~l~-~~~~gs~iivTtR~~ 317 (915)
.+..-.+.+..-.++-|-+||..... |.+.-..+...+. +...|..||.||-.+
T Consensus 135 QqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~ 190 (209)
T COG4133 135 QQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQP 190 (209)
T ss_pred HHHHHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCc
Confidence 33444566666788889999998532 2222223333333 346788889888765
No 451
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=93.30 E-value=0.15 Score=54.68 Aligned_cols=156 Identities=16% Similarity=0.228 Sum_probs=79.2
Q ss_pred CccccchHHHHHHHHHHhcccc-----------cccCceEEEEEEecCCCcHHHHHHHHhcccccc--cCC---CeEE--
Q 038751 171 SDVRGRDEEKNILKRKLLCESN-----------EERNAVQIISLVGMGGIGKTTLAQFAYNDKDVI--ENF---DKRI-- 232 (915)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~-----------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~F---~~~~-- 232 (915)
-+..|-..+...|.+.+..... -.-..-.++.|+|.+|+||||+.+++....... ..| ...+
T Consensus 371 ld~~~lp~e~~~IleSFGv~~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~v 450 (593)
T COG2401 371 LDIKGLPNEFQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEV 450 (593)
T ss_pred eecccCChHHHHHHHHhcchheeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceec
Confidence 3456666777777776643211 011234589999999999999998886531111 011 0111
Q ss_pred -------EEEeC--CCCCHHHHHHHHHHHhhC-------------C--------CCCcccHHHHHHHHHHHhccCeEEEE
Q 038751 233 -------WVCVS--DPFDEFRIAKAIIEGLEG-------------S--------LPNLRELNSLLEYIHTSIKEKKFFLI 282 (915)
Q Consensus 233 -------wv~vs--~~~~~~~~~~~i~~~l~~-------------~--------~~~~~~~~~~~~~l~~~l~~k~~LlV 282 (915)
.+.-+ ..++...+++++....+. . ..+..+.+.-...|.+.+.+++-+++
T Consensus 451 p~nt~~a~iPge~Ep~f~~~tilehl~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~ 530 (593)
T COG2401 451 PKNTVSALIPGEYEPEFGEVTILEHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLL 530 (593)
T ss_pred cccchhhccCcccccccCchhHHHHHhhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEE
Confidence 11111 122322333333332221 0 00112222233456677788888999
Q ss_pred EeCCCCCCccChhh--hHHhhhcC--CCCceEEEEcCchHHHhhhcCcC
Q 038751 283 LDDVWPDDYSKWEP--FHNCLMNG--LCGSRILVTTRKETVARMMESTD 327 (915)
Q Consensus 283 lDdvw~~~~~~~~~--l~~~l~~~--~~gs~iivTtR~~~v~~~~~~~~ 327 (915)
.|..... .+.... +...+... ..|.-+++.|+.+++.+.+.+..
T Consensus 531 iDEF~Ah-LD~~TA~rVArkiselaRe~giTlivvThrpEv~~AL~PD~ 578 (593)
T COG2401 531 IDEFAAH-LDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPDT 578 (593)
T ss_pred hhhhhhh-cCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCce
Confidence 9987321 111111 22223332 35777888888888877765543
No 452
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=93.28 E-value=0.056 Score=52.83 Aligned_cols=24 Identities=42% Similarity=0.512 Sum_probs=22.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcc
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
..+|+|-||=|+||||||+.+.+.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~ 27 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEH 27 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHH
Confidence 478999999999999999999884
No 453
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=93.25 E-value=0.31 Score=54.15 Aligned_cols=84 Identities=18% Similarity=0.192 Sum_probs=47.2
Q ss_pred EEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCC-CCCHHHHHHHHHHHhhCC-------CCCcccHHH-----
Q 038751 199 QIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSD-PFDEFRIAKAIIEGLEGS-------LPNLRELNS----- 265 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~-------~~~~~~~~~----- 265 (915)
..++|+|..|+|||||++.+..... . +..+.+.+.+ .-.+.++.+..+..-... ..+......
T Consensus 141 q~i~I~G~sG~GKTtLl~~I~~~~~---~-~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~~ 216 (418)
T TIGR03498 141 QRLGIFAGSGVGKSTLLSMLARNTD---A-DVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAAY 216 (418)
T ss_pred cEEEEECCCCCChHHHHHHHhCCCC---C-CEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHHH
Confidence 5789999999999999998887422 1 2223333333 333444555443322111 111111111
Q ss_pred HHHHHHHHh--ccCeEEEEEeCC
Q 038751 266 LLEYIHTSI--KEKKFFLILDDV 286 (915)
Q Consensus 266 ~~~~l~~~l--~~k~~LlVlDdv 286 (915)
..-.+.+++ +++.+|+++||+
T Consensus 217 ~a~~iAEyfrd~G~~Vll~~Dsl 239 (418)
T TIGR03498 217 TATAIAEYFRDQGKDVLLLMDSV 239 (418)
T ss_pred HHHHHHHHHHHcCCCEEEeccch
Confidence 222344555 588999999998
No 454
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=93.24 E-value=0.07 Score=49.80 Aligned_cols=23 Identities=30% Similarity=0.651 Sum_probs=20.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
.+++.|+|.+|+||||+.+.+..
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~ 26 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALK 26 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHH
Confidence 68999999999999999987766
No 455
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=93.19 E-value=0.18 Score=51.74 Aligned_cols=76 Identities=21% Similarity=0.132 Sum_probs=42.1
Q ss_pred EEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCC--CHHHHHHHHHHHh----hCCC--CCcccHHHHHHHHH
Q 038751 200 IISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPF--DEFRIAKAIIEGL----EGSL--PNLRELNSLLEYIH 271 (915)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~~~~~i~~~l----~~~~--~~~~~~~~~~~~l~ 271 (915)
+|+|.|.+|+||||+|+.+.+.. +..=..++.++...-+ +....-..+.... .-+. ++.-+.+.+.+.++
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l--~~~g~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l~ 78 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIF--AREGIHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELFR 78 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH--HhcCCceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHHH
Confidence 58999999999999999887632 1111123344332222 2222222222221 1122 55667777888887
Q ss_pred HHhccC
Q 038751 272 TSIKEK 277 (915)
Q Consensus 272 ~~l~~k 277 (915)
.+.+++
T Consensus 79 ~L~~g~ 84 (277)
T cd02029 79 TYGETG 84 (277)
T ss_pred HHHcCC
Confidence 776654
No 456
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=93.18 E-value=0.19 Score=49.95 Aligned_cols=52 Identities=25% Similarity=0.287 Sum_probs=36.6
Q ss_pred cCccccchHHHHHHHHHHhccccc-------ccCceEEEEEEecCCCcHHHHHHHHhcc
Q 038751 170 VSDVRGRDEEKNILKRKLLCESNE-------ERNAVQIISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 170 ~~~~~Gr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
-.++-|-+..+++|.+...-+-.. +-+..+-|.++|++|+|||.||++|+++
T Consensus 154 y~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~ 212 (408)
T KOG0727|consen 154 YADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANH 212 (408)
T ss_pred ccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhc
Confidence 345677777777777665322110 1234667889999999999999999995
No 457
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=93.17 E-value=0.35 Score=53.83 Aligned_cols=85 Identities=15% Similarity=0.117 Sum_probs=50.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCC-HHHHHHHHHHHhhCC-------CCCcccHH-----
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFD-EFRIAKAIIEGLEGS-------LPNLRELN----- 264 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~i~~~l~~~-------~~~~~~~~----- 264 (915)
-..++|+|..|+|||||++.+++... -+..+.+-+++... +.++....+..-+.. ..+.....
T Consensus 158 Gqri~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a~ 233 (442)
T PRK08927 158 GQRMGIFAGSGVGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQAA 233 (442)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHHH
Confidence 46789999999999999999987422 24455566666543 334444443322111 11111111
Q ss_pred HHHHHHHHHh--ccCeEEEEEeCC
Q 038751 265 SLLEYIHTSI--KEKKFFLILDDV 286 (915)
Q Consensus 265 ~~~~~l~~~l--~~k~~LlVlDdv 286 (915)
...-.+.+++ +++.+|+++||+
T Consensus 234 ~~a~tiAEyfrd~G~~Vll~~Dsl 257 (442)
T PRK08927 234 YLTLAIAEYFRDQGKDVLCLMDSV 257 (442)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeCc
Confidence 1222344555 589999999999
No 458
>PRK00279 adk adenylate kinase; Reviewed
Probab=93.15 E-value=0.4 Score=48.68 Aligned_cols=21 Identities=38% Similarity=0.496 Sum_probs=19.0
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 038751 200 IISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~ 220 (915)
.|.|+|++|+||||+|+.+..
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~ 22 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAE 22 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999876
No 459
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=93.12 E-value=0.066 Score=52.70 Aligned_cols=22 Identities=32% Similarity=0.563 Sum_probs=20.6
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 038751 199 QIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
++|+|+|+.|+||||||+.+.+
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~ 23 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLE 23 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHc
Confidence 5799999999999999999987
No 460
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=93.11 E-value=2.4 Score=43.98 Aligned_cols=98 Identities=15% Similarity=0.239 Sum_probs=62.7
Q ss_pred EEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHhccCe
Q 038751 199 QIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLRELNSLLEYIHTSIKEKK 278 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 278 (915)
+.+.|+|+.|+|||+-++.+++.. +...-+..+..+....+...+.......... ........+...+.+..
T Consensus 95 ~l~~vyg~~g~gKt~a~~~y~~s~------p~~~l~~~~p~~~a~~~i~~i~~~~~~~~~~--~~~d~~~~~~~~l~~~~ 166 (297)
T COG2842 95 SLVVVYGYAGLGKTQAAKNYAPSN------PNALLIEADPSYTALVLILIICAAAFGATDG--TINDLTERLMIRLRDTV 166 (297)
T ss_pred ceEEEeccccchhHHHHHhhcccC------ccceeecCChhhHHHHHHHHHHHHHhcccch--hHHHHHHHHHHHHccCc
Confidence 488999999999999999998831 2233345566666666666666555443222 23334444555557788
Q ss_pred EEEEEeCCCCCCccChhhhHHhhhcC
Q 038751 279 FFLILDDVWPDDYSKWEPFHNCLMNG 304 (915)
Q Consensus 279 ~LlVlDdvw~~~~~~~~~l~~~l~~~ 304 (915)
-+++.|+...-....++.++......
T Consensus 167 ~~iivDEA~~L~~~ale~lr~i~d~~ 192 (297)
T COG2842 167 RLIIVDEADRLPYRALEELRRIHDKT 192 (297)
T ss_pred ceeeeehhhccChHHHHHHHHHHHhh
Confidence 88899988554455566665554443
No 461
>PLN02348 phosphoribulokinase
Probab=93.11 E-value=0.36 Score=52.61 Aligned_cols=26 Identities=23% Similarity=0.316 Sum_probs=23.1
Q ss_pred CceEEEEEEecCCCcHHHHHHHHhcc
Q 038751 196 NAVQIISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 196 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
+..-+|+|.|.+|+||||+|+.+.+.
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~ 72 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSV 72 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999999998873
No 462
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=93.05 E-value=0.065 Score=52.47 Aligned_cols=23 Identities=30% Similarity=0.362 Sum_probs=20.9
Q ss_pred EEEEEEecCCCcHHHHHHHHhcc
Q 038751 199 QIISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
++|.+.|++|+||||+|+.+...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~ 25 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSV 25 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999999873
No 463
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=93.02 E-value=0.15 Score=59.89 Aligned_cols=75 Identities=15% Similarity=0.149 Sum_probs=54.3
Q ss_pred CccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 038751 171 SDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAII 250 (915)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 250 (915)
.+++|.++.++.+...+... +.+.++|.+|+||||+|+.+.+.. -..+|+..+|..- ...+...+++.+.
T Consensus 31 ~~vigq~~a~~~L~~~~~~~--------~~~l~~G~~G~GKttla~~l~~~l-~~~~~~~~~~~~n-p~~~~~~~~~~v~ 100 (637)
T PRK13765 31 DQVIGQEHAVEVIKKAAKQR--------RHVMMIGSPGTGKSMLAKAMAELL-PKEELQDILVYPN-PEDPNNPKIRTVP 100 (637)
T ss_pred HHcCChHHHHHHHHHHHHhC--------CeEEEECCCCCcHHHHHHHHHHHc-ChHhHHHheEeeC-CCcchHHHHHHHH
Confidence 46899988888887766432 358899999999999999988742 2334577778655 3446677777777
Q ss_pred HHhhC
Q 038751 251 EGLEG 255 (915)
Q Consensus 251 ~~l~~ 255 (915)
.+++.
T Consensus 101 ~~~G~ 105 (637)
T PRK13765 101 AGKGK 105 (637)
T ss_pred HhcCH
Confidence 66543
No 464
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=93.02 E-value=0.24 Score=54.25 Aligned_cols=110 Identities=16% Similarity=0.200 Sum_probs=58.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHhccC
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLRELNSLLEYIHTSIKEK 277 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 277 (915)
...|.|.|+.|.||||+.+.+.+. +..+...+++. +.++... ..... ..+-.......+.....+.++..+...
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~--i~~~~~~~i~t-iEdp~E~--~~~~~-~~~i~q~evg~~~~~~~~~l~~~lr~~ 195 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDY--INKNAAGHIIT-IEDPIEY--VHRNK-RSLINQREVGLDTLSFANALRAALRED 195 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh--hCcCCCCEEEE-EcCChhh--hccCc-cceEEccccCCCCcCHHHHHHHhhccC
Confidence 367999999999999999988763 33344445553 3332111 00000 000000000111123456677778888
Q ss_pred eEEEEEeCCCCCCccChhhhHHhhhcCCCCceEEEEcCchH
Q 038751 278 KFFLILDDVWPDDYSKWEPFHNCLMNGLCGSRILVTTRKET 318 (915)
Q Consensus 278 ~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~ 318 (915)
+=.|++|.+- +.+.+... +.....|-.|+.|.-..+
T Consensus 196 pd~i~vgEir--d~~~~~~~---l~aa~tGh~v~~T~Ha~~ 231 (343)
T TIGR01420 196 PDVILIGEMR--DLETVELA---LTAAETGHLVFGTLHTNS 231 (343)
T ss_pred CCEEEEeCCC--CHHHHHHH---HHHHHcCCcEEEEEcCCC
Confidence 8899999994 33444332 222334555555554433
No 465
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=93.01 E-value=0.39 Score=45.62 Aligned_cols=21 Identities=43% Similarity=0.589 Sum_probs=19.2
Q ss_pred EEEEecCCCcHHHHHHHHhcc
Q 038751 201 ISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 201 i~I~G~gGiGKTtLa~~v~~~ 221 (915)
|+|+|..|+|||||.+.+...
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 689999999999999998775
No 466
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=93.01 E-value=0.062 Score=51.09 Aligned_cols=22 Identities=32% Similarity=0.551 Sum_probs=19.5
Q ss_pred EEEEEecCCCcHHHHHHHHhcc
Q 038751 200 IISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
++.|+|++|+||||+|+.+.+.
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 3789999999999999998873
No 467
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=92.99 E-value=0.13 Score=53.10 Aligned_cols=65 Identities=23% Similarity=0.197 Sum_probs=40.6
Q ss_pred HHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHH
Q 038751 180 KNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKA 248 (915)
Q Consensus 180 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 248 (915)
-.+++..+... .++..+|+|.|.||+|||||...+.....-+++--.++=|.-|.+++-=.++.+
T Consensus 37 a~~ll~~l~p~----tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGD 101 (323)
T COG1703 37 ARELLRALYPR----TGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGD 101 (323)
T ss_pred HHHHHHHHhhc----CCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCcccccc
Confidence 34566666544 347789999999999999999877764433444333334444555544344433
No 468
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=92.97 E-value=0.87 Score=50.85 Aligned_cols=118 Identities=14% Similarity=0.131 Sum_probs=61.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcccccc-c--------CCC-----------eEEEEE--eC---CCCCHHHHHHHHHHH
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYNDKDVI-E--------NFD-----------KRIWVC--VS---DPFDEFRIAKAIIEG 252 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~--------~F~-----------~~~wv~--vs---~~~~~~~~~~~i~~~ 252 (915)
-..|++||+.|+|||||.+.++.+..-. + +|. ...|.. +- ......+..+.|+..
T Consensus 416 ~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgr 495 (614)
T KOG0927|consen 416 DSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGR 495 (614)
T ss_pred ccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHH
Confidence 3578999999999999999998873211 1 111 001100 00 001334455555555
Q ss_pred hhCCCC-C------cccHHHHHHHHHHHhccCeEEEEEeCCCC-CCccChhhhHHhhhcCCCCceEEEEcCch
Q 038751 253 LEGSLP-N------LRELNSLLEYIHTSIKEKKFFLILDDVWP-DDYSKWEPFHNCLMNGLCGSRILVTTRKE 317 (915)
Q Consensus 253 l~~~~~-~------~~~~~~~~~~l~~~l~~k~~LlVlDdvw~-~~~~~~~~l~~~l~~~~~gs~iivTtR~~ 317 (915)
.+.... . ..+.++..-.+.+..-..+-+||||.--+ -+....+.+..++.... |. +|++|.+.
T Consensus 496 fgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~~-Gg-vv~vSHDf 566 (614)
T KOG0927|consen 496 FGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEFP-GG-VVLVSHDF 566 (614)
T ss_pred hCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhccC-Cc-eeeeechh
Confidence 543311 1 12222222233444456788999998743 23344555555555433 43 56666553
No 469
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.96 E-value=1.1 Score=46.48 Aligned_cols=22 Identities=32% Similarity=0.558 Sum_probs=20.4
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 038751 199 QIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
.+++|+|..|.|||||.+.+..
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G 50 (246)
T PRK14269 29 KITALIGASGCGKSTFLRCFNR 50 (246)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5799999999999999999876
No 470
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=92.96 E-value=0.77 Score=54.89 Aligned_cols=53 Identities=17% Similarity=0.162 Sum_probs=32.4
Q ss_pred HHHHHhccCeEEEEEeCCCCC-CccChhhhHHhhhcC-CCCceEEEEcCchHHHh
Q 038751 269 YIHTSIKEKKFFLILDDVWPD-DYSKWEPFHNCLMNG-LCGSRILVTTRKETVAR 321 (915)
Q Consensus 269 ~l~~~l~~k~~LlVlDdvw~~-~~~~~~~l~~~l~~~-~~gs~iivTtR~~~v~~ 321 (915)
.|.+.+-.++-+++||+.-+. |.+.-..+...+... ...+.|+||-|...+..
T Consensus 619 alARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~ 673 (709)
T COG2274 619 ALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRS 673 (709)
T ss_pred HHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhh
Confidence 456777889999999987321 122222355555543 34567778877765543
No 471
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=92.94 E-value=0.073 Score=48.15 Aligned_cols=22 Identities=32% Similarity=0.540 Sum_probs=19.6
Q ss_pred EEEEecCCCcHHHHHHHHhccc
Q 038751 201 ISLVGMGGIGKTTLAQFAYNDK 222 (915)
Q Consensus 201 i~I~G~gGiGKTtLa~~v~~~~ 222 (915)
|.|+|..|+|||||.+.+....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7899999999999999988753
No 472
>PRK12678 transcription termination factor Rho; Provisional
Probab=92.93 E-value=0.14 Score=57.98 Aligned_cols=99 Identities=16% Similarity=0.074 Sum_probs=52.2
Q ss_pred HHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEE-EEEeCCCCC-HHHHHHHHHHHhhCCCCC
Q 038751 182 ILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRI-WVCVSDPFD-EFRIAKAIIEGLEGSLPN 259 (915)
Q Consensus 182 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~-wv~vs~~~~-~~~~~~~i~~~l~~~~~~ 259 (915)
++++.|..-. .-....|+|.+|+|||||++.+.+... ..+-++.+ .+-|.+... +.++.+.+--.+-....+
T Consensus 405 RvIDll~PIG-----kGQR~LIvgpp~aGKTtLL~~IAn~i~-~n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D 478 (672)
T PRK12678 405 RVIDLIMPIG-----KGQRGLIVSPPKAGKTTILQNIANAIT-TNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFD 478 (672)
T ss_pred eeeeeecccc-----cCCEeEEeCCCCCCHHHHHHHHHHHHh-hcCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCC
Confidence 5566665432 235678999999999999999988321 12334443 344444332 223322220001111111
Q ss_pred cc-c----HHHHHHHHHHHh--ccCeEEEEEeCC
Q 038751 260 LR-E----LNSLLEYIHTSI--KEKKFFLILDDV 286 (915)
Q Consensus 260 ~~-~----~~~~~~~l~~~l--~~k~~LlVlDdv 286 (915)
.. . ...+.-.+.+++ .++.+||++|++
T Consensus 479 ~p~~~~~~~a~~ai~~Ae~fre~G~dVlillDSl 512 (672)
T PRK12678 479 RPPSDHTTVAELAIERAKRLVELGKDVVVLLDSI 512 (672)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCc
Confidence 11 1 122233344555 689999999998
No 473
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=92.91 E-value=0.36 Score=50.09 Aligned_cols=84 Identities=19% Similarity=0.132 Sum_probs=48.1
Q ss_pred EEEEEEecCCCcHHHHH-HHHhcccccccCCCeE-EEEEeCCCC-CHHHHHHHHHHHhhCC-------CCCcccHHH---
Q 038751 199 QIISLVGMGGIGKTTLA-QFAYNDKDVIENFDKR-IWVCVSDPF-DEFRIAKAIIEGLEGS-------LPNLRELNS--- 265 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~~-~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~--- 265 (915)
+.++|.|.+|+|||+|| ..+.+.. +-+.+ +++-+++.. .+.++.+++...-... ..+......
T Consensus 70 Qr~~Ifg~~g~GKt~L~l~~i~~~~----~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~a 145 (274)
T cd01132 70 QRELIIGDRQTGKTAIAIDTIINQK----GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYLA 145 (274)
T ss_pred CEEEeeCCCCCCccHHHHHHHHHhc----CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHHH
Confidence 56899999999999996 6666521 23444 666676654 3455555554322111 111111111
Q ss_pred --HHHHHHHHh--ccCeEEEEEeCC
Q 038751 266 --LLEYIHTSI--KEKKFFLILDDV 286 (915)
Q Consensus 266 --~~~~l~~~l--~~k~~LlVlDdv 286 (915)
..-.+.+++ +++..|+++||+
T Consensus 146 ~~~a~aiAE~fr~~G~~Vlvl~Dsl 170 (274)
T cd01132 146 PYTGCAMGEYFMDNGKHALIIYDDL 170 (274)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEcCh
Confidence 122333444 588999999999
No 474
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.91 E-value=0.0054 Score=61.58 Aligned_cols=83 Identities=18% Similarity=0.157 Sum_probs=54.0
Q ss_pred CCCcceEEEeeeCCCCCCCcccCccCccEEEEcCcCCCCCCCCCCCCCCcceeeccccccceEeCccccCCccccccccc
Q 038751 729 PPDIKSLEIMVFKGRTPSNWIGSLNKLKMLTLNSFVKCEIMPPLGKLPSLEILRIWHMRSVKRVGDEFLGMEISDHIHIH 808 (915)
Q Consensus 729 ~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~Lp~L~~L~L~~~~~l~~~~~~~~~~~~l~~l~l~ 808 (915)
+.+.++|+.+||....+. ....++.|+.|.|+-| ....+.++..+.+|++|.|..+. +..+..-++
T Consensus 18 l~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvN-kIssL~pl~rCtrLkElYLRkN~-I~sldEL~Y----------- 83 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVN-KISSLAPLQRCTRLKELYLRKNC-IESLDELEY----------- 83 (388)
T ss_pred HHHhhhhcccCCCccHHH-HHHhcccceeEEeecc-ccccchhHHHHHHHHHHHHHhcc-cccHHHHHH-----------
Confidence 345667777777654332 2336788899998877 55677778888889999888765 444433222
Q ss_pred ccCCCcccccCcccceeeecCccc
Q 038751 809 GTSSSSSVIAFPKLQKLELTGMDE 832 (915)
Q Consensus 809 ~~~~~~~~~~f~~L~~L~l~~~~~ 832 (915)
+.++|+|+.|.|...|.
T Consensus 84 -------LknlpsLr~LWL~ENPC 100 (388)
T KOG2123|consen 84 -------LKNLPSLRTLWLDENPC 100 (388)
T ss_pred -------HhcCchhhhHhhccCCc
Confidence 24677777777766553
No 475
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=92.90 E-value=0.075 Score=50.12 Aligned_cols=20 Identities=35% Similarity=0.707 Sum_probs=18.3
Q ss_pred EEEEEecCCCcHHHHHHHHh
Q 038751 200 IISLVGMGGIGKTTLAQFAY 219 (915)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~ 219 (915)
.|+|.|.+|+||||+++.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 48999999999999998886
No 476
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=92.88 E-value=0.55 Score=54.10 Aligned_cols=48 Identities=21% Similarity=0.271 Sum_probs=33.0
Q ss_pred ceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHH
Q 038751 197 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKA 248 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 248 (915)
.-.++.|.|++|+|||||+.++.... ..+=+.+++++..+ +..++.+.
T Consensus 262 ~gs~~li~G~~G~GKt~l~~~f~~~~--~~~ge~~~y~s~eE--s~~~i~~~ 309 (484)
T TIGR02655 262 KDSIILATGATGTGKTLLVSKFLENA--CANKERAILFAYEE--SRAQLLRN 309 (484)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEEEeeC--CHHHHHHH
Confidence 45789999999999999998776632 22334567776655 44444444
No 477
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=92.87 E-value=0.14 Score=51.38 Aligned_cols=22 Identities=18% Similarity=0.122 Sum_probs=20.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 038751 199 QIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
.+++|+|+.|.||||+.+.+..
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 6899999999999999999874
No 478
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=92.86 E-value=0.092 Score=45.98 Aligned_cols=22 Identities=36% Similarity=0.333 Sum_probs=19.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHh
Q 038751 198 VQIISLVGMGGIGKTTLAQFAY 219 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~ 219 (915)
-..++|+|++|+|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 3679999999999999999876
No 479
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=92.84 E-value=0.55 Score=50.38 Aligned_cols=84 Identities=14% Similarity=0.146 Sum_probs=48.4
Q ss_pred EEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCC-CCCHHHHHHHHHHHhhCC-------CCCcccHH-----H
Q 038751 199 QIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSD-PFDEFRIAKAIIEGLEGS-------LPNLRELN-----S 265 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~-------~~~~~~~~-----~ 265 (915)
..++|+|..|+|||||.+.+.+... -+..+..-+.. .-+..++.......-... ..+..... .
T Consensus 70 qri~I~G~sG~GKTtLl~~Ia~~~~----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~~ 145 (326)
T cd01136 70 QRLGIFAGSGVGKSTLLGMIARGTT----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAAY 145 (326)
T ss_pred cEEEEECCCCCChHHHHHHHhCCCC----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHHH
Confidence 5789999999999999999887422 13334444443 334555555554432211 11111111 1
Q ss_pred HHHHHHHHh--ccCeEEEEEeCC
Q 038751 266 LLEYIHTSI--KEKKFFLILDDV 286 (915)
Q Consensus 266 ~~~~l~~~l--~~k~~LlVlDdv 286 (915)
..-.+.+++ +++.+|+++||+
T Consensus 146 ~a~~~AEyfr~~g~~Vll~~Dsl 168 (326)
T cd01136 146 TATAIAEYFRDQGKDVLLLMDSL 168 (326)
T ss_pred HHHHHHHHHHHcCCCeEEEeccc
Confidence 222333444 588999999998
No 480
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=92.82 E-value=0.17 Score=62.25 Aligned_cols=139 Identities=19% Similarity=0.164 Sum_probs=71.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcccccccCC---CeEEEEEeCCC----CCHH--HHHHHHHHHhhCCCCCcccHHHHHH
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYNDKDVIENF---DKRIWVCVSDP----FDEF--RIAKAIIEGLEGSLPNLRELNSLLE 268 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~vs~~----~~~~--~~~~~i~~~l~~~~~~~~~~~~~~~ 268 (915)
..-+.|+|.+|.||||+.+.+.-.. ..+.+ +..+++.+... .... .+..-+...+... .. ..+...
T Consensus 222 ~~~~~Ilg~pGsGKTtfl~~lA~~~-~~~~~~~~~vpi~~~l~~~~~~~~~~~q~~~~~~l~~~~~~~-~~---~~~~~~ 296 (824)
T COG5635 222 YAKLLILGAPGSGKTTFLQRLALWL-AQRTLEPEDVPIFLLLNAFALARKFEKQLSLIDYLAEELFSQ-GI---AKQLIE 296 (824)
T ss_pred hhheeeecCCCCCceehHHHHHHHh-ccCcCCcccCceeeechhHHHhhhhHhhccHHHHHHHHHhcc-CC---cchhhH
Confidence 3478999999999999997765431 11222 33444443311 1111 1111122222111 11 122222
Q ss_pred HHHHHhccCeEEEEEeCCCCCCccChhhh---HHhhhcCCCCceEEEEcCchHHHhhhcCcCeEeCCCCCHHHHHH
Q 038751 269 YIHTSIKEKKFFLILDDVWPDDYSKWEPF---HNCLMNGLCGSRILVTTRKETVARMMESTDVISIKELSEQECWS 341 (915)
Q Consensus 269 ~l~~~l~~k~~LlVlDdvw~~~~~~~~~l---~~~l~~~~~gs~iivTtR~~~v~~~~~~~~~~~l~~L~~~~~~~ 341 (915)
...+.++..++++++|.+.......-... ...+...-+.+.+|+|+|....-........+++..+.++....
T Consensus 297 ~~~e~l~~g~~llLlDGlDe~~~~~~~~~~~~i~~f~~~~~~~~~iltcR~~~~~~~~~~f~~~ei~~~~~~~i~~ 372 (824)
T COG5635 297 AHQELLKTGKLLLLLDGLDELEPKNQRALIREINKFLQEYPDAQVLLTCRPDTYKEEFKGFAVFEIYKFLDLQINQ 372 (824)
T ss_pred HHHHHHhccchhhHhhccchhhhhhHHHHHHHHHHHhhhccCCeEEEEeccchhhhhhhhhhhccchhhhHHHHHH
Confidence 23577888999999999854222211111 11122234578999999876544443334456666666655443
No 481
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.79 E-value=0.013 Score=56.40 Aligned_cols=69 Identities=17% Similarity=0.427 Sum_probs=55.7
Q ss_pred cccCcccceeeecCcccccccccCCCCcccCcccceeecccCccccCCC-cCCCCCCCcCeEeEcCCcchh
Q 038751 816 VIAFPKLQKLELTGMDELEEWDFGNDDITIMPHIKSLYITYCEKLKSLP-ELLLRSTTLESLTIFGVPIVQ 885 (915)
Q Consensus 816 ~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~lp~L~~L~l~~c~~L~~lp-~~l~~l~~L~~L~l~~c~~l~ 885 (915)
+..+++++.|.+.+|..+..|..+--. +-+|+|+.|+|++|+.+++-- .++..+++|+.|.|++.|.+.
T Consensus 121 L~~l~~i~~l~l~~ck~~dD~~L~~l~-~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v~ 190 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDDWCLERLG-GLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYVA 190 (221)
T ss_pred HhccchhhhheeccccchhhHHHHHhc-ccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhhh
Confidence 347889999999999999999854221 268999999999999988643 457788999999999987653
No 482
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=92.79 E-value=0.094 Score=49.54 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=22.1
Q ss_pred ceEEEEEEecCCCcHHHHHHHHhc
Q 038751 197 AVQIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
...||+..|.+|.||||+|..++.
T Consensus 22 ~~~viW~TGLSGsGKSTiA~ale~ 45 (197)
T COG0529 22 KGAVIWFTGLSGSGKSTIANALEE 45 (197)
T ss_pred CCeEEEeecCCCCCHHHHHHHHHH
Confidence 457999999999999999999987
No 483
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=92.79 E-value=0.066 Score=50.56 Aligned_cols=21 Identities=38% Similarity=0.594 Sum_probs=19.5
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 038751 200 IISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~ 220 (915)
+|.|+|.+|+||||+|+.+..
T Consensus 1 ~I~i~G~~GsGKst~a~~la~ 21 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAK 21 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999887
No 484
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=92.77 E-value=0.096 Score=51.69 Aligned_cols=37 Identities=30% Similarity=0.387 Sum_probs=27.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEe
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCV 236 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 236 (915)
.++|.|+|+.|+|||||++.+.. .....|...++.+.
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~--~~~~~~~~~v~~TT 38 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQ--EFPDKFGRVVSHTT 38 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHH--HSTTTEEEEEEEES
T ss_pred CCEEEEECCCCCCHHHHHHHHHH--hcccccccceeecc
Confidence 36899999999999999999987 34456654444443
No 485
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=92.77 E-value=0.4 Score=47.80 Aligned_cols=23 Identities=35% Similarity=0.446 Sum_probs=21.0
Q ss_pred EEEEEEecCCCcHHHHHHHHhcc
Q 038751 199 QIISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
..|+|.|..|+||||+++.+.+.
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~ 26 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKL 26 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999874
No 486
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=92.76 E-value=0.73 Score=49.51 Aligned_cols=49 Identities=27% Similarity=0.257 Sum_probs=31.8
Q ss_pred eEeCCCCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCCCchHH
Q 038751 328 VISIKELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKGLPLAA 377 (915)
Q Consensus 328 ~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~PLai 377 (915)
++++++++.+|+..++.-..-..--.. ...-+...+++.-..+|+|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~-~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRS-RVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCcccc-CCCCHHHHHHHHHhcCCCHHHh
Confidence 789999999999999887653322111 0122334556666678988644
No 487
>PTZ00185 ATPase alpha subunit; Provisional
Probab=92.75 E-value=0.56 Score=52.62 Aligned_cols=88 Identities=15% Similarity=0.137 Sum_probs=51.6
Q ss_pred EEEEEEecCCCcHHHHH-HHHhccccc-----ccCCCeEEEEEeCCCCCHHHHHHHHHHHhhC-CC-------CCcccHH
Q 038751 199 QIISLVGMGGIGKTTLA-QFAYNDKDV-----IENFDKRIWVCVSDPFDEFRIAKAIIEGLEG-SL-------PNLRELN 264 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa-~~v~~~~~~-----~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~-~~-------~~~~~~~ 264 (915)
+.++|.|..|+|||+|| ..+.+...+ .++-+.++++-+++......-+...+++-+. .. .+.....
T Consensus 190 QR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~~~ 269 (574)
T PTZ00185 190 QRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPAGL 269 (574)
T ss_pred CEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCHHH
Confidence 46789999999999997 666664322 1244567888888875443333333333321 10 1111111
Q ss_pred H-----HHHHHHHHh--ccCeEEEEEeCC
Q 038751 265 S-----LLEYIHTSI--KEKKFFLILDDV 286 (915)
Q Consensus 265 ~-----~~~~l~~~l--~~k~~LlVlDdv 286 (915)
+ ..-.+.+++ +++..|+|+||+
T Consensus 270 r~~Apy~a~tiAEYFrd~GkdVLiv~DDL 298 (574)
T PTZ00185 270 QYLAPYSGVTMGEYFMNRGRHCLCVYDDL 298 (574)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEcCc
Confidence 1 122334444 588999999999
No 488
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=92.75 E-value=1 Score=46.18 Aligned_cols=24 Identities=33% Similarity=0.441 Sum_probs=21.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcc
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
-.+++|+|..|.|||||++.+..-
T Consensus 40 Ge~~~i~G~nGsGKSTLl~~l~Gl 63 (226)
T cd03248 40 GEVTALVGPSGSGKSTVVALLENF 63 (226)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999998764
No 489
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=92.75 E-value=1.2 Score=50.82 Aligned_cols=24 Identities=29% Similarity=0.591 Sum_probs=21.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcc
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
-.+++|+|..|.|||||++.+..-
T Consensus 50 GEivgIiGpNGSGKSTLLkiLaGL 73 (549)
T PRK13545 50 GEIVGIIGLNGSGKSTLSNLIAGV 73 (549)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 368999999999999999999874
No 490
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=92.72 E-value=0.078 Score=52.42 Aligned_cols=21 Identities=19% Similarity=0.135 Sum_probs=18.6
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 038751 200 IISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~ 220 (915)
++.|+|+.|.||||+.+.+.-
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 478999999999999998873
No 491
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=92.69 E-value=0.085 Score=52.23 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=20.5
Q ss_pred EEEEEEecCCCcHHHHHHHHhcc
Q 038751 199 QIISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
.++.|+|+.|+|||||++.+...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 46899999999999999999773
No 492
>PRK03846 adenylylsulfate kinase; Provisional
Probab=92.67 E-value=0.094 Score=52.51 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=22.0
Q ss_pred ceEEEEEEecCCCcHHHHHHHHhc
Q 038751 197 AVQIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
...+|+|+|++|+||||||+.+..
T Consensus 23 ~~~~i~i~G~~GsGKSTla~~l~~ 46 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALEE 46 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999887
No 493
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=92.66 E-value=0.31 Score=58.50 Aligned_cols=47 Identities=21% Similarity=0.168 Sum_probs=36.6
Q ss_pred CccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcc
Q 038751 171 SDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
+.++|....++++.+.+..... ...-|.|+|..|+||+++|+.+.+.
T Consensus 325 ~~l~g~s~~~~~~~~~~~~~a~----~~~pvli~Ge~GtGK~~~A~~ih~~ 371 (638)
T PRK11388 325 DHMPQDSPQMRRLIHFGRQAAK----SSFPVLLCGEEGVGKALLAQAIHNE 371 (638)
T ss_pred cceEECCHHHHHHHHHHHHHhC----cCCCEEEECCCCcCHHHHHHHHHHh
Confidence 4588998888888887765432 2233789999999999999999874
No 494
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=92.62 E-value=0.59 Score=49.06 Aligned_cols=55 Identities=16% Similarity=0.267 Sum_probs=38.8
Q ss_pred EEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhhCC
Q 038751 199 QIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGS 256 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 256 (915)
.++.|-|.+|+|||++|..++.+...... ..++|++. +-+..++...++....+.
T Consensus 20 ~L~vi~a~pg~GKT~~~l~ia~~~a~~~~-~~vly~Sl--Em~~~~l~~R~la~~s~v 74 (259)
T PF03796_consen 20 ELTVIAARPGVGKTAFALQIALNAALNGG-YPVLYFSL--EMSEEELAARLLARLSGV 74 (259)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTTS-SEEEEEES--SS-HHHHHHHHHHHHHTS
T ss_pred cEEEEEecccCCchHHHHHHHHHHHHhcC-CeEEEEcC--CCCHHHHHHHHHHHhhcc
Confidence 57889999999999999888775443322 45666554 457778888888877653
No 495
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=92.60 E-value=0.31 Score=58.12 Aligned_cols=84 Identities=18% Similarity=0.138 Sum_probs=55.0
Q ss_pred ceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhhCCCC-----CcccHHHHHHHHH
Q 038751 197 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLP-----NLRELNSLLEYIH 271 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 271 (915)
.-+++-|+|.+|+||||||.+++.... ..=..++|+.....++.. .+++++.+.. .....+.....+.
T Consensus 59 ~GsiteI~G~~GsGKTtLal~~~~~a~--~~G~~v~yId~E~t~~~~-----~A~~lGvDl~~llv~~~~~~E~~l~~i~ 131 (790)
T PRK09519 59 RGRVIEIYGPESSGKTTVALHAVANAQ--AAGGVAAFIDAEHALDPD-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 131 (790)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCcEEEECCccchhHH-----HHHHcCCChhHeEEecCCCHHHHHHHHH
Confidence 458899999999999999977654322 223567899988877743 5566654321 1223344555555
Q ss_pred HHhc-cCeEEEEEeCCC
Q 038751 272 TSIK-EKKFFLILDDVW 287 (915)
Q Consensus 272 ~~l~-~k~~LlVlDdvw 287 (915)
..++ ++.-|||+|-+-
T Consensus 132 ~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 132 MLIRSGALDIVVIDSVA 148 (790)
T ss_pred HHhhcCCCeEEEEcchh
Confidence 5554 456689999873
No 496
>PRK13949 shikimate kinase; Provisional
Probab=92.60 E-value=0.08 Score=51.37 Aligned_cols=22 Identities=45% Similarity=0.501 Sum_probs=20.0
Q ss_pred EEEEEecCCCcHHHHHHHHhcc
Q 038751 200 IISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
.|.|+|++|+||||+++.+++.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999873
No 497
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=92.59 E-value=0.2 Score=45.03 Aligned_cols=50 Identities=14% Similarity=0.248 Sum_probs=33.8
Q ss_pred ccccchHHHHHHHHHHhccc-ccccCceEEEEEEecCCCcHHHHHHHHhcc
Q 038751 172 DVRGRDEEKNILKRKLLCES-NEERNAVQIISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 172 ~~~Gr~~~~~~l~~~L~~~~-~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
.++|-.-..+.+++.+..-- +......-|++.+|.+|+|||.+++.+++.
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 46666655555555553311 113456789999999999999988777664
No 498
>PRK13947 shikimate kinase; Provisional
Probab=92.57 E-value=0.078 Score=51.66 Aligned_cols=21 Identities=38% Similarity=0.506 Sum_probs=19.4
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 038751 200 IISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~ 220 (915)
-|.|+|++|+||||+|+.+.+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~ 23 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVAT 23 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 388999999999999999987
No 499
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=92.56 E-value=0.47 Score=55.60 Aligned_cols=23 Identities=26% Similarity=0.192 Sum_probs=19.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
.++..|.|.+|.||||++..+..
T Consensus 160 ~~~~vitGgpGTGKTt~v~~ll~ 182 (586)
T TIGR01447 160 SNFSLITGGPGTGKTTTVARLLL 182 (586)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHH
Confidence 36889999999999999887765
No 500
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=92.55 E-value=0.27 Score=52.92 Aligned_cols=81 Identities=20% Similarity=0.271 Sum_probs=49.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhhCCCCC-----cccHHHHHHHHHH
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPN-----LRELNSLLEYIHT 272 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~~ 272 (915)
-.+|.|-|.+|+|||||.-++..+ ....- .+.+|+-.+...-.+ --++.++....+ ..+++.+...+.+
T Consensus 93 Gs~iLIgGdPGIGKSTLLLQva~~--lA~~~-~vLYVsGEES~~Qik---lRA~RL~~~~~~l~l~aEt~~e~I~~~l~~ 166 (456)
T COG1066 93 GSVILIGGDPGIGKSTLLLQVAAR--LAKRG-KVLYVSGEESLQQIK---LRADRLGLPTNNLYLLAETNLEDIIAELEQ 166 (456)
T ss_pred ccEEEEccCCCCCHHHHHHHHHHH--HHhcC-cEEEEeCCcCHHHHH---HHHHHhCCCccceEEehhcCHHHHHHHHHh
Confidence 478999999999999999888874 32222 567776555332222 223344432222 2344444444443
Q ss_pred HhccCeEEEEEeCCC
Q 038751 273 SIKEKKFFLILDDVW 287 (915)
Q Consensus 273 ~l~~k~~LlVlDdvw 287 (915)
.++-++|+|-+.
T Consensus 167 ---~~p~lvVIDSIQ 178 (456)
T COG1066 167 ---EKPDLVVIDSIQ 178 (456)
T ss_pred ---cCCCEEEEeccc
Confidence 578899999884
Done!