Query 038751
Match_columns 915
No_of_seqs 447 out of 3941
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 04:13:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038751.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038751hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 2.3E-48 8E-53 453.3 23.1 316 174-514 131-473 (549)
2 1vt4_I APAF-1 related killer D 100.0 7.4E-39 2.5E-43 374.4 21.3 286 172-506 129-437 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 2.3E-37 8E-42 400.4 25.2 313 167-512 120-452 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 3.9E-34 1.4E-38 338.9 28.4 306 169-509 122-449 (591)
5 3rgz_A Protein brassinosteroid 99.8 4.5E-22 1.5E-26 242.4 7.8 335 533-906 294-766 (768)
6 4ecn_A Leucine-rich repeat pro 99.8 1.5E-20 5.1E-25 227.3 13.7 326 533-883 448-839 (876)
7 4eco_A Uncharacterized protein 99.8 1.1E-20 3.7E-25 224.7 11.8 327 533-883 206-599 (636)
8 3t6q_A CD180 antigen; protein- 99.8 1.3E-19 4.5E-24 215.4 19.5 334 532-883 32-461 (606)
9 4fmz_A Internalin; leucine ric 99.8 9.1E-20 3.1E-24 200.6 16.1 294 533-882 44-344 (347)
10 4ecn_A Leucine-rich repeat pro 99.8 1.1E-20 3.9E-25 228.3 9.1 293 545-882 437-787 (876)
11 3rgz_A Protein brassinosteroid 99.8 2.5E-20 8.4E-25 227.0 10.1 320 532-883 268-692 (768)
12 3vq2_A TLR4, TOLL-like recepto 99.8 2.5E-19 8.5E-24 213.0 18.6 357 533-912 32-485 (606)
13 3o6n_A APL1; leucine-rich repe 99.8 1.7E-19 5.8E-24 201.8 15.8 297 532-883 44-351 (390)
14 3vq2_A TLR4, TOLL-like recepto 99.8 6E-19 2.1E-23 209.7 21.2 336 533-912 56-509 (606)
15 4eco_A Uncharacterized protein 99.8 1E-19 3.6E-24 216.3 12.8 308 532-885 248-633 (636)
16 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 5.5E-19 1.9E-23 207.7 17.3 327 533-883 52-509 (562)
17 1o6v_A Internalin A; bacterial 99.8 1.4E-18 4.8E-23 199.1 20.0 291 533-883 68-365 (466)
18 2z7x_B TOLL-like receptor 1, v 99.8 3.2E-19 1.1E-23 207.8 14.9 97 533-638 21-126 (520)
19 2z81_A CD282 antigen, TOLL-lik 99.8 7.7E-19 2.6E-23 206.1 17.7 99 533-638 26-134 (549)
20 3v47_A TOLL-like receptor 5B a 99.8 1.5E-18 5.2E-23 198.5 19.4 319 532-883 29-407 (455)
21 2z7x_B TOLL-like receptor 1, v 99.8 1.2E-18 4.2E-23 202.8 18.8 140 536-699 3-150 (520)
22 3oja_B Anopheles plasmodium-re 99.8 4.2E-19 1.4E-23 209.8 14.2 296 533-883 51-357 (597)
23 1o6v_A Internalin A; bacterial 99.8 1.2E-18 4E-23 199.7 17.5 294 531-883 88-387 (466)
24 3t6q_A CD180 antigen; protein- 99.8 1E-18 3.4E-23 207.8 16.3 179 727-913 322-513 (606)
25 4fmz_A Internalin; leucine ric 99.8 1.2E-18 3.9E-23 191.8 15.0 300 552-913 40-346 (347)
26 2id5_A Lingo-1, leucine rich r 99.8 1.7E-18 5.7E-23 199.3 16.6 288 533-883 32-332 (477)
27 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 6.3E-18 2.2E-22 198.6 20.2 341 534-913 32-510 (562)
28 4fcg_A Uncharacterized protein 99.8 2.4E-18 8.2E-23 187.0 15.0 230 533-880 81-310 (328)
29 2z63_A TOLL-like receptor 4, v 99.8 6.5E-18 2.2E-22 199.2 17.8 97 533-635 28-132 (570)
30 2z81_A CD282 antigen, TOLL-lik 99.8 5E-18 1.7E-22 199.2 16.6 148 726-883 357-509 (549)
31 3bz5_A Internalin-J, INLJ; leu 99.7 1.6E-17 5.4E-22 188.8 19.2 289 533-882 42-350 (457)
32 3j0a_A TOLL-like receptor 5; m 99.7 1.3E-17 4.3E-22 205.3 19.3 152 531-698 22-185 (844)
33 2z63_A TOLL-like receptor 4, v 99.7 1.9E-18 6.3E-23 203.9 9.0 151 728-882 371-529 (570)
34 1ziw_A TOLL-like receptor 3; i 99.7 3.2E-17 1.1E-21 197.5 17.1 151 533-699 25-183 (680)
35 2id5_A Lingo-1, leucine rich r 99.7 5.8E-17 2E-21 186.4 17.4 310 536-912 14-332 (477)
36 3bz5_A Internalin-J, INLJ; leu 99.7 1.9E-16 6.5E-21 179.9 20.0 272 532-864 63-355 (457)
37 3v47_A TOLL-like receptor 5B a 99.7 3.1E-17 1.1E-21 187.5 12.7 348 537-912 14-407 (455)
38 3j0a_A TOLL-like receptor 5; m 99.7 2.7E-16 9.2E-21 193.5 21.3 304 536-882 7-373 (844)
39 3o6n_A APL1; leucine-rich repe 99.7 8.6E-17 3E-21 179.8 14.0 299 553-912 42-351 (390)
40 1w5s_A Origin recognition comp 99.7 6.2E-16 2.1E-20 174.3 21.0 302 169-487 20-373 (412)
41 1ziw_A TOLL-like receptor 3; i 99.7 1.5E-16 5E-21 191.7 16.0 98 534-636 249-362 (680)
42 4fcg_A Uncharacterized protein 99.7 2.4E-16 8.4E-21 171.1 16.0 89 532-635 103-191 (328)
43 2ft3_A Biglycan; proteoglycan, 99.7 8.2E-17 2.8E-21 175.6 11.7 93 533-635 33-131 (332)
44 2qen_A Walker-type ATPase; unk 99.7 6.9E-15 2.4E-19 161.7 25.5 293 168-506 9-349 (350)
45 3oja_B Anopheles plasmodium-re 99.7 1.7E-16 5.9E-21 187.4 13.4 299 553-912 48-357 (597)
46 1xku_A Decorin; proteoglycan, 99.7 9.6E-17 3.3E-21 175.0 10.3 284 534-881 32-329 (330)
47 1ogq_A PGIP-2, polygalacturona 99.7 3.1E-17 1.1E-21 177.1 4.4 100 533-637 50-159 (313)
48 2ft3_A Biglycan; proteoglycan, 99.6 3.8E-16 1.3E-20 170.3 12.5 97 533-638 54-158 (332)
49 1ogq_A PGIP-2, polygalacturona 99.6 6.7E-17 2.3E-21 174.5 5.2 243 556-884 50-304 (313)
50 2fna_A Conserved hypothetical 99.6 2.2E-14 7.6E-19 158.0 25.5 292 169-505 11-356 (357)
51 3g06_A SSPH2 (leucine-rich rep 99.6 4E-15 1.4E-19 174.1 19.5 252 534-884 41-297 (622)
52 1xku_A Decorin; proteoglycan, 99.6 2.5E-15 8.7E-20 163.6 16.2 285 555-910 30-329 (330)
53 3qfl_A MLA10; coiled-coil, (CC 99.6 7.5E-16 2.6E-20 136.7 8.0 81 4-88 1-83 (115)
54 1jl5_A Outer protein YOPM; leu 99.6 2.4E-15 8.4E-20 170.6 14.5 258 533-829 11-286 (454)
55 4g8a_A TOLL-like receptor 4; l 99.6 2.8E-15 9.7E-20 179.0 15.7 98 533-637 52-158 (635)
56 1jl5_A Outer protein YOPM; leu 99.6 1.9E-14 6.6E-19 163.2 18.4 278 533-883 111-408 (454)
57 2z80_A TOLL-like receptor 2, v 99.6 1.5E-15 5E-20 167.2 7.7 265 538-883 36-313 (353)
58 3zyi_A Leucine-rich repeat-con 99.6 5E-14 1.7E-18 160.5 18.6 110 748-882 191-301 (452)
59 3zyj_A Leucine-rich repeat-con 99.5 6.7E-14 2.3E-18 158.8 18.8 110 748-882 180-290 (440)
60 2z66_A Variable lymphocyte rec 99.5 9.5E-15 3.2E-19 157.3 6.1 194 533-787 28-234 (306)
61 2z80_A TOLL-like receptor 2, v 99.5 3.1E-14 1.1E-18 156.6 8.7 244 533-814 52-315 (353)
62 1fnn_A CDC6P, cell division co 99.5 9E-12 3.1E-16 138.9 28.4 323 170-512 16-387 (389)
63 2qby_B CDC6 homolog 3, cell di 99.5 4.7E-12 1.6E-16 140.9 25.8 297 170-487 19-341 (384)
64 3g06_A SSPH2 (leucine-rich rep 99.5 8E-13 2.7E-17 154.6 19.9 252 556-912 40-296 (622)
65 4g8a_A TOLL-like receptor 4; l 99.5 9.5E-14 3.3E-18 165.8 12.4 150 729-882 419-578 (635)
66 1z7x_W Ribonuclease inhibitor; 99.5 3.7E-16 1.3E-20 178.9 -9.3 81 801-883 314-410 (461)
67 2z66_A Variable lymphocyte rec 99.4 5E-14 1.7E-18 151.6 6.5 196 531-787 50-259 (306)
68 1ozn_A Reticulon 4 receptor; N 99.4 3.5E-14 1.2E-18 151.1 5.1 189 536-787 14-212 (285)
69 2v1u_A Cell division control p 99.4 1.2E-11 4.2E-16 137.7 26.1 296 170-487 18-353 (387)
70 3oja_A Leucine-rich immune mol 99.4 1.1E-13 3.8E-18 158.5 9.4 55 555-617 33-88 (487)
71 3zyj_A Leucine-rich repeat-con 99.4 3.1E-13 1.1E-17 153.3 12.5 68 726-794 203-272 (440)
72 3o53_A Protein LRIM1, AGAP0063 99.4 6.8E-15 2.3E-19 159.1 -1.3 271 552-888 30-303 (317)
73 3o53_A Protein LRIM1, AGAP0063 99.4 5.5E-15 1.9E-19 159.8 -2.9 242 579-886 28-277 (317)
74 3zyi_A Leucine-rich repeat-con 99.4 2.9E-13 9.8E-18 154.2 10.0 215 533-787 75-301 (452)
75 1wwl_A Monocyte differentiatio 99.4 5.1E-14 1.7E-18 151.8 1.3 131 725-883 168-308 (312)
76 3oja_A Leucine-rich immune mol 99.4 5.2E-14 1.8E-18 161.3 1.2 72 533-616 34-106 (487)
77 2qby_A CDC6 homolog 1, cell di 99.4 2.5E-11 8.6E-16 135.0 22.7 296 169-486 18-349 (386)
78 1ozn_A Reticulon 4 receptor; N 99.4 4.6E-13 1.6E-17 142.3 7.5 193 532-787 31-236 (285)
79 2xwt_C Thyrotropin receptor; s 99.3 4.7E-12 1.6E-16 130.7 12.8 157 682-884 75-239 (239)
80 3ogk_B Coronatine-insensitive 99.3 6.2E-14 2.1E-18 165.9 -3.4 314 533-882 164-524 (592)
81 1h6u_A Internalin H; cell adhe 99.3 4.2E-12 1.4E-16 136.3 11.1 189 533-794 41-234 (308)
82 2ast_B S-phase kinase-associat 99.3 1.1E-13 3.8E-18 151.0 -2.9 247 535-868 49-314 (336)
83 3ogk_B Coronatine-insensitive 99.3 7E-14 2.4E-18 165.5 -5.0 316 534-882 139-499 (592)
84 1p9a_G Platelet glycoprotein I 99.3 1.3E-11 4.3E-16 131.3 12.6 158 681-883 49-207 (290)
85 1h6u_A Internalin H; cell adhe 99.3 5.8E-12 2E-16 135.3 9.5 187 553-831 38-228 (308)
86 1wwl_A Monocyte differentiatio 99.3 2.6E-12 9E-17 138.3 6.5 195 533-787 95-307 (312)
87 1njg_A DNA polymerase III subu 99.3 8.7E-11 3E-15 121.5 16.8 198 171-384 23-231 (250)
88 4ay9_X Follicle-stimulating ho 99.2 1.4E-11 4.9E-16 134.9 10.8 232 536-856 12-255 (350)
89 2ast_B S-phase kinase-associat 99.2 6.4E-13 2.2E-17 145.0 -0.5 237 557-881 48-303 (336)
90 1z7x_W Ribonuclease inhibitor; 99.2 3.3E-14 1.1E-18 162.7 -12.1 320 533-883 56-439 (461)
91 2ca6_A RAN GTPase-activating p 99.2 3.5E-13 1.2E-17 150.1 -3.8 131 730-883 159-315 (386)
92 2z62_A TOLL-like receptor 4, v 99.2 1.6E-11 5.6E-16 129.6 8.6 197 533-787 28-235 (276)
93 4ezg_A Putative uncharacterize 99.2 3.7E-11 1.3E-15 119.7 10.5 145 729-882 43-192 (197)
94 4glp_A Monocyte differentiatio 99.2 2.9E-11 1E-15 130.0 9.7 86 683-787 220-305 (310)
95 2o6q_A Variable lymphocyte rec 99.2 3.3E-11 1.1E-15 126.7 9.8 189 534-787 17-216 (270)
96 2z62_A TOLL-like receptor 4, v 99.2 2.2E-11 7.5E-16 128.7 7.8 155 683-881 72-234 (276)
97 4ay9_X Follicle-stimulating ho 99.2 7.5E-11 2.6E-15 129.1 11.7 233 559-880 12-255 (350)
98 2xwt_C Thyrotropin receptor; s 99.2 7.6E-11 2.6E-15 121.5 10.5 107 727-859 124-238 (239)
99 2chg_A Replication factor C sm 99.2 6.8E-10 2.3E-14 112.9 17.5 185 171-381 17-204 (226)
100 1p9a_G Platelet glycoprotein I 99.1 3.5E-11 1.2E-15 127.8 7.7 91 533-633 10-106 (290)
101 2p1m_B Transport inhibitor res 99.1 6E-13 2.1E-17 157.5 -6.8 316 533-884 156-519 (594)
102 3rfs_A Internalin B, repeat mo 99.1 3.9E-11 1.3E-15 126.3 7.9 192 533-794 41-240 (272)
103 4glp_A Monocyte differentiatio 99.1 1.7E-10 5.8E-15 124.0 11.4 175 684-882 114-305 (310)
104 3rfs_A Internalin B, repeat mo 99.1 1.9E-10 6.6E-15 121.0 11.5 151 726-882 59-216 (272)
105 1h6t_A Internalin B; cell adhe 99.1 7.6E-11 2.6E-15 125.3 7.7 147 726-883 64-212 (291)
106 2ca6_A RAN GTPase-activating p 99.1 1.2E-12 4E-17 145.9 -8.5 92 681-787 181-285 (386)
107 2p1m_B Transport inhibitor res 99.1 2.6E-13 9E-18 160.6 -14.8 180 681-883 283-493 (594)
108 1m9s_A Internalin B; cell inva 99.1 2E-10 6.9E-15 134.2 9.7 61 725-787 148-208 (605)
109 1h6t_A Internalin B; cell adhe 99.1 2E-10 6.9E-15 122.0 8.5 61 725-787 151-211 (291)
110 2o6q_A Variable lymphocyte rec 99.0 5.9E-10 2E-14 117.1 11.1 172 687-882 37-216 (270)
111 1m9s_A Internalin B; cell inva 99.0 2.3E-10 8E-15 133.6 8.5 147 726-883 61-209 (605)
112 1hqc_A RUVB; extended AAA-ATPa 99.0 2.2E-09 7.5E-14 116.1 13.5 267 171-484 12-324 (324)
113 1sxj_B Activator 1 37 kDa subu 99.0 3.4E-09 1.2E-13 114.5 13.9 186 171-382 21-211 (323)
114 3m19_A Variable lymphocyte rec 98.9 5.5E-09 1.9E-13 108.3 13.9 150 729-883 34-191 (251)
115 1xeu_A Internalin C; cellular 98.9 2.1E-09 7.2E-14 112.2 10.5 144 728-883 39-184 (263)
116 2ell_A Acidic leucine-rich nuc 98.9 1.2E-09 4.2E-14 105.6 7.8 132 727-883 21-159 (168)
117 3goz_A Leucine-rich repeat-con 98.9 3.5E-11 1.2E-15 132.5 -4.2 243 576-882 13-295 (362)
118 3e6j_A Variable lymphocyte rec 98.9 5.8E-09 2E-13 106.4 12.2 129 729-883 39-171 (229)
119 1dce_A Protein (RAB geranylger 98.9 3.4E-11 1.2E-15 139.9 -5.8 121 730-877 441-566 (567)
120 4ezg_A Putative uncharacterize 98.9 8.2E-10 2.8E-14 109.9 4.5 149 580-787 39-192 (197)
121 3m19_A Variable lymphocyte rec 98.9 1.8E-08 6E-13 104.5 14.7 172 730-913 14-192 (251)
122 3te6_A Regulatory protein SIR3 98.9 3.8E-08 1.3E-12 103.8 17.1 208 172-384 21-283 (318)
123 2v9t_B SLIT homolog 2 protein 98.9 7.8E-09 2.7E-13 104.7 11.0 130 730-883 32-164 (220)
124 1dce_A Protein (RAB geranylger 98.9 2.1E-11 7.3E-16 141.5 -9.2 99 726-826 459-566 (567)
125 1a9n_A U2A', U2A'; complex (nu 98.8 3.1E-09 1.1E-13 103.5 6.2 136 726-885 15-154 (176)
126 3cvr_A Invasion plasmid antige 98.8 3.8E-09 1.3E-13 122.0 7.7 83 534-634 60-147 (571)
127 2o6s_A Variable lymphocyte rec 98.8 2.6E-08 8.8E-13 99.9 12.6 129 729-882 27-159 (208)
128 2je0_A Acidic leucine-rich nuc 98.8 1.8E-09 6E-14 102.1 3.2 129 727-880 14-149 (149)
129 1xeu_A Internalin C; cellular 98.8 6.7E-09 2.3E-13 108.4 7.8 61 725-787 123-183 (263)
130 1iqp_A RFCS; clamp loader, ext 98.8 3.6E-08 1.2E-12 106.6 13.3 185 171-384 25-215 (327)
131 3goz_A Leucine-rich repeat-con 98.8 3E-10 1E-14 125.0 -4.0 92 681-787 160-264 (362)
132 3cvr_A Invasion plasmid antige 98.7 1.1E-08 3.8E-13 118.1 8.7 137 729-883 99-242 (571)
133 3e6j_A Variable lymphocyte rec 98.7 6.6E-08 2.3E-12 98.5 12.7 151 731-912 20-171 (229)
134 2v70_A SLIT-2, SLIT homolog 2 98.7 8.3E-08 2.8E-12 97.1 11.8 144 733-883 14-165 (220)
135 1jr3_A DNA polymerase III subu 98.7 2.6E-07 9.1E-12 101.8 16.2 195 171-381 16-221 (373)
136 2v9t_B SLIT homolog 2 protein 98.6 3.4E-07 1.2E-11 92.5 13.3 149 733-912 14-164 (220)
137 4b8c_D Glucose-repressible alc 98.6 2.6E-08 8.8E-13 119.4 5.5 83 533-617 173-255 (727)
138 2xot_A Amphoterin-induced prot 98.6 1.3E-07 4.4E-12 103.7 10.6 152 729-883 38-201 (361)
139 1w8a_A SLIT protein; signaling 98.6 1.8E-07 6.2E-12 92.3 10.4 125 733-882 11-137 (192)
140 2o6s_A Variable lymphocyte rec 98.6 5.8E-08 2E-12 97.3 6.8 154 687-871 28-189 (208)
141 2chq_A Replication factor C sm 98.6 3.4E-07 1.2E-11 98.5 13.1 182 171-381 17-204 (319)
142 1jbk_A CLPB protein; beta barr 98.5 3.5E-07 1.2E-11 90.1 11.8 151 171-343 22-194 (195)
143 2wfh_A SLIT homolog 2 protein 98.5 2.3E-07 7.8E-12 91.6 10.2 124 733-883 13-138 (193)
144 2ell_A Acidic leucine-rich nuc 98.5 2E-08 6.8E-13 96.9 2.3 143 685-867 22-166 (168)
145 2xot_A Amphoterin-induced prot 98.5 3.9E-08 1.3E-12 107.9 4.1 149 688-859 40-201 (361)
146 4b8c_D Glucose-repressible alc 98.5 1.3E-07 4.3E-12 113.4 8.0 114 743-883 214-328 (727)
147 3sb4_A Hypothetical leucine ri 98.5 1.5E-07 5E-12 101.9 7.3 125 726-877 198-327 (329)
148 3pfi_A Holliday junction ATP-d 98.5 3.5E-06 1.2E-10 91.3 17.6 179 170-381 28-227 (338)
149 2o6r_A Variable lymphocyte rec 98.4 9.8E-07 3.4E-11 85.7 11.8 125 732-883 9-136 (177)
150 3bos_A Putative DNA replicatio 98.4 1.1E-06 3.8E-11 90.1 12.3 174 171-381 28-217 (242)
151 1sxj_D Activator 1 41 kDa subu 98.4 3E-06 1E-10 92.4 15.2 195 170-380 36-234 (353)
152 3pvs_A Replication-associated 98.4 4.7E-06 1.6E-10 93.0 15.8 177 171-380 26-214 (447)
153 2v70_A SLIT-2, SLIT homolog 2 98.3 1.2E-06 3.9E-11 88.6 9.8 127 729-859 31-165 (220)
154 2z4s_A Chromosomal replication 98.3 4.8E-06 1.6E-10 93.2 14.2 161 198-379 130-304 (440)
155 2wfh_A SLIT homolog 2 protein 98.3 2.1E-06 7.1E-11 84.6 9.9 108 729-859 30-138 (193)
156 3uk6_A RUVB-like 2; hexameric 98.3 1.1E-05 3.8E-10 88.5 16.2 199 170-380 43-302 (368)
157 3h4m_A Proteasome-activating n 98.2 2E-05 6.9E-10 83.0 17.2 187 169-380 15-230 (285)
158 2qz4_A Paraplegin; AAA+, SPG7, 98.2 1.5E-05 5E-10 82.8 15.1 188 170-380 5-221 (262)
159 1sxj_E Activator 1 40 kDa subu 98.2 3.7E-06 1.3E-10 91.8 11.0 196 171-381 14-237 (354)
160 2je0_A Acidic leucine-rich nuc 98.2 3.9E-07 1.3E-11 85.8 2.5 98 533-637 17-123 (149)
161 2ra8_A Uncharacterized protein 98.2 7.4E-08 2.5E-12 104.7 -2.9 142 725-883 167-319 (362)
162 1a9n_A U2A', U2A'; complex (nu 98.2 1.9E-06 6.5E-11 83.6 7.3 108 749-883 15-125 (176)
163 3sb4_A Hypothetical leucine ri 98.2 7.2E-06 2.5E-10 88.4 12.1 99 729-853 225-327 (329)
164 3syl_A Protein CBBX; photosynt 98.2 1.5E-05 5.2E-10 85.0 14.4 161 172-348 32-218 (309)
165 1ds9_A Outer arm dynein; leuci 98.2 6.1E-08 2.1E-12 96.3 -4.4 38 748-786 43-80 (198)
166 1a5t_A Delta prime, HOLB; zinc 98.2 2.2E-05 7.5E-10 84.6 15.3 170 177-380 8-204 (334)
167 1sxj_A Activator 1 95 kDa subu 98.1 1.2E-05 4.1E-10 92.1 13.7 197 170-382 38-254 (516)
168 3u61_B DNA polymerase accessor 98.1 1.6E-05 5.5E-10 85.5 14.0 179 170-378 25-213 (324)
169 1w8a_A SLIT protein; signaling 98.1 7.4E-06 2.5E-10 80.6 10.2 107 730-859 29-138 (192)
170 1d2n_A N-ethylmaleimide-sensit 98.1 4.9E-05 1.7E-09 79.3 16.7 174 171-372 33-228 (272)
171 2o6r_A Variable lymphocyte rec 98.1 8.5E-06 2.9E-10 79.0 9.3 108 729-860 27-137 (177)
172 2r9u_A Variable lymphocyte rec 98.1 1E-05 3.4E-10 78.2 9.5 58 733-793 15-73 (174)
173 2p65_A Hypothetical protein PF 98.1 1.1E-05 3.6E-10 78.9 9.8 45 171-221 22-66 (187)
174 1ds9_A Outer arm dynein; leuci 98.1 3.6E-08 1.2E-12 98.0 -8.3 127 725-877 43-180 (198)
175 1l8q_A Chromosomal replication 98.0 3.9E-05 1.3E-09 82.4 14.0 155 198-376 37-203 (324)
176 3g39_A Variable lymphocyte rec 98.0 1.4E-05 4.8E-10 76.8 9.2 54 732-787 11-65 (170)
177 3n70_A Transport activator; si 98.0 7.2E-06 2.5E-10 76.5 6.1 115 172-317 2-116 (145)
178 3eie_A Vacuolar protein sortin 98.0 0.0002 6.8E-09 76.6 18.2 186 169-381 16-228 (322)
179 1sxj_C Activator 1 40 kDa subu 98.0 7.2E-05 2.4E-09 80.9 14.7 176 171-378 25-209 (340)
180 2w58_A DNAI, primosome compone 98.0 2E-05 6.8E-10 78.2 9.2 100 199-316 55-158 (202)
181 2r9u_A Variable lymphocyte rec 97.9 9.1E-06 3.1E-10 78.5 6.2 93 536-637 15-115 (174)
182 3d8b_A Fidgetin-like protein 1 97.9 0.00014 4.6E-09 79.1 15.1 188 170-382 83-296 (357)
183 1xwi_A SKD1 protein; VPS4B, AA 97.9 0.00053 1.8E-08 73.2 19.3 189 169-382 10-224 (322)
184 2qp9_X Vacuolar protein sortin 97.9 0.00017 5.8E-09 78.2 15.2 186 170-381 50-261 (355)
185 3ec2_A DNA replication protein 97.8 2.9E-05 9.8E-10 75.4 8.0 120 177-316 20-142 (180)
186 3b9p_A CG5977-PA, isoform A; A 97.8 0.00062 2.1E-08 71.9 18.9 185 170-381 20-233 (297)
187 3g39_A Variable lymphocyte rec 97.8 1.6E-05 5.5E-10 76.4 5.8 94 535-637 11-112 (170)
188 3co5_A Putative two-component 97.8 2E-05 7E-10 73.2 5.7 111 171-316 4-115 (143)
189 2gno_A DNA polymerase III, gam 97.8 9.3E-05 3.2E-09 78.0 11.3 147 176-347 2-152 (305)
190 2ifg_A High affinity nerve gro 97.8 6.3E-05 2.2E-09 81.6 10.3 58 734-793 12-72 (347)
191 1qvr_A CLPB protein; coiled co 97.8 0.00013 4.5E-09 89.0 13.6 154 171-346 170-344 (854)
192 2zan_A Vacuolar protein sortin 97.7 0.00061 2.1E-08 76.2 17.9 190 169-381 132-345 (444)
193 3e4g_A ATP synthase subunit S, 97.7 7.4E-06 2.5E-10 77.9 1.5 85 817-908 82-172 (176)
194 4fcw_A Chaperone protein CLPB; 97.7 0.00016 5.5E-09 77.0 11.7 135 172-316 18-169 (311)
195 3cf0_A Transitional endoplasmi 97.7 0.00061 2.1E-08 72.0 15.9 182 170-376 14-223 (301)
196 3e4g_A ATP synthase subunit S, 97.7 6.2E-06 2.1E-10 78.4 0.1 87 753-862 61-154 (176)
197 3vfd_A Spastin; ATPase, microt 97.7 0.0011 3.7E-08 72.9 18.1 188 169-380 113-325 (389)
198 3pxg_A Negative regulator of g 97.6 0.00029 9.9E-09 79.4 13.2 145 171-347 180-338 (468)
199 2c9o_A RUVB-like 1; hexameric 97.6 0.00027 9.3E-09 79.5 11.9 98 279-381 297-410 (456)
200 2bjv_A PSP operon transcriptio 97.6 0.00017 5.8E-09 74.9 9.5 158 171-343 6-190 (265)
201 4b4t_J 26S protease regulatory 97.6 0.0017 5.7E-08 70.2 17.3 183 168-375 145-355 (405)
202 3hu3_A Transitional endoplasmi 97.6 0.00063 2.2E-08 76.6 14.7 185 171-380 204-414 (489)
203 4fdw_A Leucine rich hypothetic 97.6 0.00089 3E-08 73.8 15.7 138 730-899 248-394 (401)
204 1ofh_A ATP-dependent HSL prote 97.5 0.00084 2.9E-08 71.3 14.7 153 171-345 15-213 (310)
205 1in4_A RUVB, holliday junction 97.5 0.00075 2.6E-08 72.5 14.2 178 171-381 25-223 (334)
206 2kjq_A DNAA-related protein; s 97.5 9.2E-05 3.1E-09 69.1 6.0 86 199-316 37-124 (149)
207 4b4t_K 26S protease regulatory 97.5 0.0011 3.7E-08 72.7 14.5 182 168-374 169-379 (428)
208 1ojl_A Transcriptional regulat 97.5 0.00026 9E-09 74.8 9.1 158 171-344 2-187 (304)
209 3pxi_A Negative regulator of g 97.4 0.00061 2.1E-08 82.0 12.7 156 171-347 491-675 (758)
210 4b4t_L 26S protease subunit RP 97.4 0.0024 8.2E-08 70.1 16.0 181 169-374 179-387 (437)
211 1lv7_A FTSH; alpha/beta domain 97.4 0.0021 7.2E-08 66.1 14.6 187 169-380 10-224 (257)
212 1r6b_X CLPA protein; AAA+, N-t 97.4 0.0008 2.7E-08 81.1 12.9 157 171-347 186-362 (758)
213 4b4t_H 26S protease regulatory 97.3 0.0038 1.3E-07 68.3 16.4 180 170-374 208-415 (467)
214 2ifg_A High affinity nerve gro 97.3 0.00018 6E-09 78.1 6.1 93 538-637 13-113 (347)
215 3pxi_A Negative regulator of g 97.2 0.0014 4.8E-08 78.9 13.0 149 171-347 180-338 (758)
216 2ra8_A Uncharacterized protein 97.2 3.9E-05 1.3E-09 83.2 -0.6 167 723-912 132-319 (362)
217 4b4t_M 26S protease regulatory 97.2 0.0013 4.4E-08 72.1 11.5 180 169-374 179-387 (434)
218 2ce7_A Cell division protein F 97.2 0.0065 2.2E-07 67.8 16.6 180 170-374 15-221 (476)
219 4b4t_I 26S protease regulatory 97.1 0.0061 2.1E-07 66.0 14.6 181 168-374 179-388 (437)
220 2r44_A Uncharacterized protein 97.0 0.0029 9.9E-08 67.9 11.7 152 171-349 27-200 (331)
221 1r6b_X CLPA protein; AAA+, N-t 97.0 0.0016 5.3E-08 78.6 10.2 135 171-316 458-607 (758)
222 3un9_A NLR family member X1; l 97.0 8.9E-06 3E-10 89.0 -8.8 164 687-883 72-251 (372)
223 3m6a_A ATP-dependent protease 97.0 0.0023 7.7E-08 73.4 10.6 165 171-347 81-266 (543)
224 2qgz_A Helicase loader, putati 97.0 0.00081 2.8E-08 71.1 6.4 56 178-237 135-190 (308)
225 2r62_A Cell division protease 96.9 0.00028 9.5E-09 73.3 2.4 158 170-347 10-196 (268)
226 4fdw_A Leucine rich hypothetic 96.9 0.0034 1.2E-07 69.1 11.0 101 725-829 175-280 (401)
227 1qvr_A CLPB protein; coiled co 96.9 0.0026 9E-08 77.4 10.6 135 172-316 559-710 (854)
228 4fs7_A Uncharacterized protein 96.7 0.0079 2.7E-07 66.2 12.5 58 549-615 64-123 (394)
229 3cf2_A TER ATPase, transitiona 96.7 0.0044 1.5E-07 73.3 10.6 182 170-376 203-409 (806)
230 2vhj_A Ntpase P4, P4; non- hyd 96.7 0.00097 3.3E-08 69.4 4.1 68 198-287 123-192 (331)
231 1um8_A ATP-dependent CLP prote 96.6 0.022 7.5E-07 62.1 14.9 50 172-221 22-95 (376)
232 2cvh_A DNA repair and recombin 96.5 0.009 3.1E-07 59.5 10.2 84 198-287 20-115 (220)
233 3t15_A Ribulose bisphosphate c 96.5 0.0073 2.5E-07 63.3 9.6 25 197-221 35-59 (293)
234 2x8a_A Nuclear valosin-contain 96.4 0.038 1.3E-06 57.1 14.3 156 170-347 9-191 (274)
235 3un9_A NLR family member X1; l 96.4 0.00023 7.8E-09 77.7 -3.0 67 683-764 179-250 (372)
236 4fs7_A Uncharacterized protein 96.3 0.016 5.4E-07 63.8 11.2 124 727-879 250-374 (394)
237 1g8p_A Magnesium-chelatase 38 96.2 0.014 4.7E-07 63.0 10.3 46 170-221 23-68 (350)
238 2dhr_A FTSH; AAA+ protein, hex 96.2 0.038 1.3E-06 61.9 14.0 177 169-374 29-236 (499)
239 1ixz_A ATP-dependent metallopr 96.2 0.02 6.8E-07 58.5 10.6 180 170-374 15-221 (254)
240 1ypw_A Transitional endoplasmi 96.1 0.0093 3.2E-07 71.7 8.6 158 170-347 203-385 (806)
241 1jr3_D DNA polymerase III, del 96.1 0.059 2E-06 57.8 14.1 157 197-379 17-183 (343)
242 3hr8_A Protein RECA; alpha and 96.0 0.017 5.7E-07 61.8 9.2 84 197-287 60-149 (356)
243 1iy2_A ATP-dependent metallopr 96.0 0.057 2E-06 55.9 13.2 180 169-374 38-245 (278)
244 1n0w_A DNA repair protein RAD5 96.0 0.02 6.8E-07 58.0 9.6 89 198-287 24-129 (243)
245 2w0m_A SSO2452; RECA, SSPF, un 96.0 0.017 5.9E-07 58.0 9.0 114 199-317 24-168 (235)
246 2b8t_A Thymidine kinase; deoxy 95.9 0.0056 1.9E-07 60.8 4.3 112 198-317 12-126 (223)
247 1v5w_A DMC1, meiotic recombina 95.8 0.034 1.2E-06 59.6 10.6 57 197-254 121-181 (343)
248 2i1q_A DNA repair and recombin 95.8 0.023 7.8E-07 60.5 9.2 89 197-286 97-213 (322)
249 2z43_A DNA repair and recombin 95.7 0.027 9.4E-07 59.8 9.5 88 198-286 107-212 (324)
250 1ye8_A Protein THEP1, hypothet 95.7 0.036 1.2E-06 53.0 9.4 22 200-221 2-23 (178)
251 3io5_A Recombination and repai 95.7 0.032 1.1E-06 57.8 9.3 83 200-287 30-121 (333)
252 1g5t_A COB(I)alamin adenosyltr 95.7 0.012 4.2E-07 56.5 5.8 118 198-317 28-163 (196)
253 1xp8_A RECA protein, recombina 95.6 0.03 1E-06 60.2 9.2 83 198-287 74-162 (366)
254 1mv5_A LMRA, multidrug resista 95.2 0.15 5.3E-06 51.4 12.6 23 198-220 28-50 (243)
255 2px0_A Flagellar biosynthesis 95.2 0.043 1.5E-06 57.2 8.6 87 197-286 104-191 (296)
256 2pze_A Cystic fibrosis transme 95.2 0.15 5E-06 51.0 12.1 23 199-221 35-57 (229)
257 2cbz_A Multidrug resistance-as 95.2 0.077 2.6E-06 53.3 10.1 23 199-221 32-54 (237)
258 2zr9_A Protein RECA, recombina 95.2 0.042 1.4E-06 58.9 8.4 83 198-287 61-149 (349)
259 1rz3_A Hypothetical protein rb 95.1 0.019 6.5E-07 56.3 5.3 42 176-220 3-44 (201)
260 3rw6_A Nuclear RNA export fact 95.1 0.0092 3.1E-07 61.1 3.0 84 533-623 170-265 (267)
261 1u94_A RECA protein, recombina 95.1 0.04 1.4E-06 59.1 8.0 82 198-286 63-150 (356)
262 3tqc_A Pantothenate kinase; bi 94.8 0.07 2.4E-06 56.0 8.7 45 174-220 70-114 (321)
263 3nbx_X ATPase RAVA; AAA+ ATPas 94.7 0.022 7.7E-07 63.9 5.1 42 172-221 23-64 (500)
264 1cr0_A DNA primase/helicase; R 94.7 0.076 2.6E-06 55.6 9.0 38 199-237 36-73 (296)
265 3rw6_A Nuclear RNA export fact 94.7 0.0078 2.7E-07 61.6 1.2 60 728-788 168-232 (267)
266 1pzn_A RAD51, DNA repair and r 94.6 0.12 4.2E-06 55.3 10.4 90 197-287 130-241 (349)
267 4a74_A DNA repair and recombin 94.5 0.13 4.3E-06 51.4 9.6 47 197-243 24-74 (231)
268 3c8u_A Fructokinase; YP_612366 94.4 0.028 9.7E-07 55.4 4.5 37 180-220 8-44 (208)
269 1io0_A Tropomodulin; LRR prote 94.4 0.0029 9.8E-08 61.4 -2.8 99 674-787 23-134 (185)
270 3lda_A DNA repair protein RAD5 94.4 0.15 5.2E-06 55.4 10.5 56 198-254 178-237 (400)
271 3ice_A Transcription terminati 94.4 0.027 9.3E-07 59.8 4.3 97 181-286 162-270 (422)
272 1qhx_A CPT, protein (chloramph 94.3 0.019 6.4E-07 55.0 2.7 22 199-220 4-25 (178)
273 2pjz_A Hypothetical protein ST 94.2 0.21 7.1E-06 50.9 10.5 22 199-220 31-52 (263)
274 3lw7_A Adenylate kinase relate 94.2 0.022 7.6E-07 54.2 3.0 20 199-218 2-21 (179)
275 1zp6_A Hypothetical protein AT 94.1 0.026 9E-07 54.7 3.5 24 198-221 9-32 (191)
276 3kb2_A SPBC2 prophage-derived 94.1 0.021 7.2E-07 54.2 2.7 22 199-220 2-23 (173)
277 1odf_A YGR205W, hypothetical 3 94.1 0.039 1.3E-06 57.3 4.9 81 196-276 29-117 (290)
278 1gvn_B Zeta; postsegregational 94.0 0.047 1.6E-06 56.8 5.4 25 196-220 31-55 (287)
279 2orw_A Thymidine kinase; TMTK, 94.0 0.011 3.6E-07 57.1 0.2 22 199-220 4-25 (184)
280 3vaa_A Shikimate kinase, SK; s 93.9 0.024 8.3E-07 55.4 2.8 23 198-220 25-47 (199)
281 1ly1_A Polynucleotide kinase; 93.9 0.028 9.7E-07 53.8 3.2 22 199-220 3-24 (181)
282 1kgd_A CASK, peripheral plasma 93.9 0.025 8.6E-07 54.3 2.7 22 199-220 6-27 (180)
283 3bh0_A DNAB-like replicative h 93.8 0.29 1E-05 51.5 11.2 52 198-253 68-119 (315)
284 1vma_A Cell division protein F 93.8 0.18 6.3E-06 52.6 9.4 88 197-287 103-196 (306)
285 3uie_A Adenylyl-sulfate kinase 93.8 0.031 1.1E-06 54.7 3.4 25 197-221 24-48 (200)
286 3hws_A ATP-dependent CLP prote 93.8 0.04 1.4E-06 59.7 4.5 50 172-221 16-74 (363)
287 4gt6_A Cell surface protein; l 93.7 0.51 1.8E-05 51.4 13.5 108 749-883 261-369 (394)
288 2p5t_B PEZT; postsegregational 93.7 0.049 1.7E-06 55.6 4.7 40 180-220 15-54 (253)
289 1kag_A SKI, shikimate kinase I 93.6 0.027 9.4E-07 53.5 2.4 22 199-220 5-26 (173)
290 3trf_A Shikimate kinase, SK; a 93.5 0.031 1.1E-06 53.8 2.7 23 198-220 5-27 (185)
291 2rhm_A Putative kinase; P-loop 93.4 0.042 1.4E-06 53.2 3.5 23 198-220 5-27 (193)
292 1nks_A Adenylate kinase; therm 93.4 0.039 1.3E-06 53.4 3.3 22 199-220 2-23 (194)
293 2ga8_A Hypothetical 39.9 kDa p 93.4 0.069 2.3E-06 56.5 5.2 45 174-220 2-46 (359)
294 4gp7_A Metallophosphoesterase; 93.4 0.04 1.4E-06 52.3 3.2 23 198-220 9-31 (171)
295 1ex7_A Guanylate kinase; subst 93.3 0.027 9.4E-07 54.1 1.9 22 199-220 2-23 (186)
296 1knq_A Gluconate kinase; ALFA/ 93.3 0.043 1.5E-06 52.3 3.2 23 198-220 8-30 (175)
297 1zuh_A Shikimate kinase; alpha 93.2 0.038 1.3E-06 52.3 2.7 24 197-220 6-29 (168)
298 2dr3_A UPF0273 protein PH0284; 93.2 0.17 5.9E-06 51.0 7.8 39 198-238 23-61 (247)
299 4a1f_A DNAB helicase, replicat 93.1 0.21 7.1E-06 52.8 8.5 53 198-254 46-98 (338)
300 4eun_A Thermoresistant glucoki 93.1 0.04 1.4E-06 53.9 2.8 23 198-220 29-51 (200)
301 1sky_E F1-ATPase, F1-ATP synth 93.1 0.13 4.6E-06 56.4 7.1 98 183-286 141-254 (473)
302 3dm5_A SRP54, signal recogniti 93.1 0.6 2.1E-05 51.1 12.3 24 197-220 99-122 (443)
303 3cf2_A TER ATPase, transitiona 93.1 0.51 1.8E-05 55.8 12.5 100 168-287 474-580 (806)
304 3t61_A Gluconokinase; PSI-biol 93.0 0.037 1.3E-06 54.2 2.4 23 198-220 18-40 (202)
305 1uf9_A TT1252 protein; P-loop, 93.0 0.053 1.8E-06 53.0 3.5 24 197-220 7-30 (203)
306 2bdt_A BH3686; alpha-beta prot 93.0 0.051 1.7E-06 52.5 3.3 22 199-220 3-24 (189)
307 3asz_A Uridine kinase; cytidin 93.0 0.051 1.7E-06 53.6 3.4 24 197-220 5-28 (211)
308 2qt1_A Nicotinamide riboside k 93.0 0.056 1.9E-06 53.1 3.7 24 197-220 20-43 (207)
309 3tau_A Guanylate kinase, GMP k 93.0 0.045 1.6E-06 53.9 2.9 24 198-221 8-31 (208)
310 3tr0_A Guanylate kinase, GMP k 93.0 0.048 1.6E-06 53.5 3.1 22 199-220 8-29 (205)
311 1kht_A Adenylate kinase; phosp 92.9 0.046 1.6E-06 52.8 2.9 22 199-220 4-25 (192)
312 3iij_A Coilin-interacting nucl 92.8 0.038 1.3E-06 52.9 2.2 23 198-220 11-33 (180)
313 3a00_A Guanylate kinase, GMP k 92.8 0.039 1.4E-06 53.2 2.3 22 199-220 2-23 (186)
314 3jvv_A Twitching mobility prot 92.8 0.21 7.3E-06 53.4 8.1 111 199-321 124-235 (356)
315 2ck3_D ATP synthase subunit be 92.8 0.5 1.7E-05 51.8 11.0 99 182-286 142-262 (482)
316 1xjc_A MOBB protein homolog; s 92.8 0.049 1.7E-06 51.2 2.7 25 197-221 3-27 (169)
317 2ze6_A Isopentenyl transferase 92.7 0.053 1.8E-06 55.2 3.2 23 199-221 2-24 (253)
318 2qor_A Guanylate kinase; phosp 92.7 0.043 1.5E-06 53.9 2.4 24 197-220 11-34 (204)
319 1ukz_A Uridylate kinase; trans 92.7 0.061 2.1E-06 52.7 3.5 24 197-220 14-37 (203)
320 2if2_A Dephospho-COA kinase; a 92.7 0.054 1.8E-06 53.1 3.1 22 199-220 2-23 (204)
321 2jaq_A Deoxyguanosine kinase; 92.7 0.052 1.8E-06 53.1 2.9 21 200-220 2-22 (205)
322 1lvg_A Guanylate kinase, GMP k 92.6 0.045 1.5E-06 53.4 2.3 22 199-220 5-26 (198)
323 2j41_A Guanylate kinase; GMP, 92.6 0.054 1.9E-06 53.1 2.9 22 199-220 7-28 (207)
324 1cke_A CK, MSSA, protein (cyti 92.6 0.054 1.9E-06 54.1 2.9 22 199-220 6-27 (227)
325 3fwy_A Light-independent proto 92.6 0.061 2.1E-06 56.5 3.4 24 197-220 47-70 (314)
326 1via_A Shikimate kinase; struc 92.5 0.047 1.6E-06 52.0 2.4 22 199-220 5-26 (175)
327 1tev_A UMP-CMP kinase; ploop, 92.5 0.06 2.1E-06 52.2 3.2 23 198-220 3-25 (196)
328 1y63_A LMAJ004144AAA protein; 92.5 0.056 1.9E-06 52.0 2.9 23 198-220 10-32 (184)
329 2r2a_A Uncharacterized protein 92.5 0.17 5.8E-06 49.1 6.3 20 199-218 6-25 (199)
330 2c95_A Adenylate kinase 1; tra 92.5 0.058 2E-06 52.4 3.0 23 198-220 9-31 (196)
331 2hf9_A Probable hydrogenase ni 92.5 0.11 3.7E-06 51.8 5.0 25 197-221 37-61 (226)
332 1jjv_A Dephospho-COA kinase; P 92.5 0.065 2.2E-06 52.6 3.4 22 199-220 3-24 (206)
333 2ffh_A Protein (FFH); SRP54, s 92.5 0.44 1.5E-05 52.0 10.2 24 198-221 98-121 (425)
334 3a4m_A L-seryl-tRNA(SEC) kinas 92.5 0.062 2.1E-06 55.0 3.2 23 198-220 4-26 (260)
335 2yvu_A Probable adenylyl-sulfa 92.4 0.073 2.5E-06 51.2 3.6 25 197-221 12-36 (186)
336 3ney_A 55 kDa erythrocyte memb 92.4 0.058 2E-06 52.2 2.7 24 197-220 18-41 (197)
337 2xxa_A Signal recognition part 92.4 0.49 1.7E-05 52.0 10.5 24 197-220 99-122 (433)
338 1fx0_B ATP synthase beta chain 92.3 0.34 1.2E-05 53.3 9.0 99 182-286 154-275 (498)
339 3e70_C DPA, signal recognition 92.3 0.53 1.8E-05 49.6 10.3 25 197-221 128-152 (328)
340 2iyv_A Shikimate kinase, SK; t 92.3 0.046 1.6E-06 52.5 1.9 22 199-220 3-24 (184)
341 3cm0_A Adenylate kinase; ATP-b 92.3 0.075 2.6E-06 51.1 3.4 22 199-220 5-26 (186)
342 3umf_A Adenylate kinase; rossm 92.2 0.075 2.6E-06 52.4 3.4 26 196-221 27-52 (217)
343 1qf9_A UMP/CMP kinase, protein 92.2 0.074 2.5E-06 51.4 3.3 23 198-220 6-28 (194)
344 1htw_A HI0065; nucleotide-bind 92.2 0.08 2.7E-06 49.4 3.3 23 198-220 33-55 (158)
345 2wsm_A Hydrogenase expression/ 92.1 0.1 3.4E-06 51.8 4.3 40 176-221 14-53 (221)
346 1e6c_A Shikimate kinase; phosp 92.1 0.054 1.8E-06 51.4 2.1 22 199-220 3-24 (173)
347 1znw_A Guanylate kinase, GMP k 92.1 0.072 2.5E-06 52.4 3.1 23 198-220 20-42 (207)
348 2bwj_A Adenylate kinase 5; pho 92.1 0.072 2.5E-06 51.8 3.1 23 198-220 12-34 (199)
349 3aez_A Pantothenate kinase; tr 92.1 0.079 2.7E-06 55.7 3.5 24 197-220 89-112 (312)
350 3kl4_A SRP54, signal recogniti 92.1 0.41 1.4E-05 52.3 9.3 25 197-221 96-120 (433)
351 2plr_A DTMP kinase, probable t 92.0 0.076 2.6E-06 52.3 3.2 23 199-221 5-27 (213)
352 2pt5_A Shikimate kinase, SK; a 92.0 0.073 2.5E-06 50.2 2.9 21 200-220 2-22 (168)
353 2bbw_A Adenylate kinase 4, AK4 91.9 0.075 2.6E-06 53.9 3.1 23 198-220 27-49 (246)
354 2grj_A Dephospho-COA kinase; T 91.9 0.093 3.2E-06 50.8 3.5 25 196-220 10-34 (192)
355 3tlx_A Adenylate kinase 2; str 91.9 0.13 4.3E-06 52.1 4.7 24 197-220 28-51 (243)
356 1io0_A Tropomodulin; LRR prote 91.9 0.014 4.7E-07 56.5 -2.4 94 679-787 57-162 (185)
357 1rj9_A FTSY, signal recognitio 91.9 0.075 2.6E-06 55.6 3.0 24 197-220 101-124 (304)
358 2pez_A Bifunctional 3'-phospho 91.9 0.085 2.9E-06 50.4 3.2 23 198-220 5-27 (179)
359 2cdn_A Adenylate kinase; phosp 91.9 0.078 2.7E-06 51.8 3.0 23 198-220 20-42 (201)
360 1z6g_A Guanylate kinase; struc 91.8 0.064 2.2E-06 53.3 2.3 22 199-220 24-45 (218)
361 1uj2_A Uridine-cytidine kinase 91.8 0.083 2.9E-06 53.8 3.2 24 197-220 21-44 (252)
362 1j8m_F SRP54, signal recogniti 91.8 0.39 1.3E-05 49.9 8.4 88 198-287 98-190 (297)
363 3upu_A ATP-dependent DNA helic 91.7 0.16 5.4E-06 56.8 5.7 23 199-221 46-68 (459)
364 2pbr_A DTMP kinase, thymidylat 91.7 0.082 2.8E-06 51.2 2.9 21 200-220 2-22 (195)
365 3l0o_A Transcription terminati 91.7 0.53 1.8E-05 50.0 9.1 54 180-239 162-216 (427)
366 2vli_A Antibiotic resistance p 91.7 0.061 2.1E-06 51.6 2.0 23 198-220 5-27 (183)
367 2jeo_A Uridine-cytidine kinase 91.6 0.091 3.1E-06 53.2 3.3 23 198-220 25-47 (245)
368 4e22_A Cytidylate kinase; P-lo 91.6 0.085 2.9E-06 53.7 3.1 23 198-220 27-49 (252)
369 3cmu_A Protein RECA, recombina 91.6 0.29 9.8E-06 63.4 8.4 83 197-286 1426-1514(2050)
370 2f1r_A Molybdopterin-guanine d 91.6 0.058 2E-06 51.1 1.6 23 199-221 3-25 (171)
371 1aky_A Adenylate kinase; ATP:A 91.6 0.081 2.8E-06 52.6 2.8 23 198-220 4-26 (220)
372 1gtv_A TMK, thymidylate kinase 91.6 0.055 1.9E-06 53.4 1.6 22 200-221 2-23 (214)
373 3llm_A ATP-dependent RNA helic 91.6 0.81 2.8E-05 45.7 10.3 31 180-218 66-96 (235)
374 2z0h_A DTMP kinase, thymidylat 91.5 0.2 7E-06 48.4 5.7 22 200-221 2-23 (197)
375 1s96_A Guanylate kinase, GMP k 91.5 0.085 2.9E-06 52.3 2.9 24 198-221 16-39 (219)
376 1nn5_A Similar to deoxythymidy 91.4 0.094 3.2E-06 51.7 3.1 24 198-221 9-32 (215)
377 2ged_A SR-beta, signal recogni 91.4 0.14 4.9E-06 49.3 4.3 25 197-221 47-71 (193)
378 2wwf_A Thymidilate kinase, put 91.3 0.096 3.3E-06 51.5 3.1 24 198-221 10-33 (212)
379 2f6r_A COA synthase, bifunctio 91.3 0.11 3.9E-06 53.6 3.7 24 197-220 74-97 (281)
380 1sq5_A Pantothenate kinase; P- 91.2 0.21 7.2E-06 52.4 5.7 24 197-220 79-102 (308)
381 1zd8_A GTP:AMP phosphotransfer 91.2 0.1 3.4E-06 52.2 3.1 23 198-220 7-29 (227)
382 1m7g_A Adenylylsulfate kinase; 91.1 0.11 3.9E-06 51.1 3.4 24 198-221 25-48 (211)
383 3e1s_A Exodeoxyribonuclease V, 91.1 0.31 1.1E-05 55.8 7.5 23 199-221 205-227 (574)
384 1ls1_A Signal recognition part 91.1 0.52 1.8E-05 48.9 8.6 24 198-221 98-121 (295)
385 2j37_W Signal recognition part 91.1 1.2 4E-05 49.9 11.8 25 196-220 99-123 (504)
386 2i3b_A HCR-ntpase, human cance 91.0 0.091 3.1E-06 50.7 2.4 22 200-221 3-24 (189)
387 2zts_A Putative uncharacterize 91.0 0.36 1.2E-05 48.7 7.2 49 198-249 30-78 (251)
388 3fb4_A Adenylate kinase; psych 91.0 0.1 3.6E-06 51.5 2.9 21 200-220 2-22 (216)
389 3p32_A Probable GTPase RV1496/ 91.0 0.21 7E-06 53.7 5.5 37 180-220 65-101 (355)
390 2yhs_A FTSY, cell division pro 91.0 0.54 1.9E-05 52.0 8.8 42 197-241 292-333 (503)
391 2pcj_A ABC transporter, lipopr 90.9 0.12 4E-06 51.5 3.2 22 199-220 31-52 (224)
392 1q57_A DNA primase/helicase; d 90.9 0.7 2.4E-05 52.3 10.1 54 198-254 242-295 (503)
393 3b9q_A Chloroplast SRP recepto 90.9 0.12 4.3E-06 53.9 3.5 25 197-221 99-123 (302)
394 3be4_A Adenylate kinase; malar 90.9 0.11 3.7E-06 51.5 3.0 22 199-220 6-27 (217)
395 3tif_A Uncharacterized ABC tra 90.9 0.11 3.8E-06 52.1 3.1 22 199-220 32-53 (235)
396 3hjn_A DTMP kinase, thymidylat 90.8 0.36 1.2E-05 46.8 6.5 49 200-250 2-50 (197)
397 1zak_A Adenylate kinase; ATP:A 90.8 0.093 3.2E-06 52.2 2.4 23 198-220 5-27 (222)
398 1g41_A Heat shock protein HSLU 90.8 0.17 5.7E-06 55.6 4.5 51 171-221 15-73 (444)
399 2v54_A DTMP kinase, thymidylat 90.8 0.11 3.8E-06 50.7 2.9 23 199-221 5-27 (204)
400 2onk_A Molybdate/tungstate ABC 90.8 0.11 3.8E-06 52.2 2.9 22 199-220 25-46 (240)
401 3dl0_A Adenylate kinase; phosp 90.8 0.11 3.9E-06 51.3 2.9 21 200-220 2-22 (216)
402 3nwj_A ATSK2; P loop, shikimat 90.7 0.089 3E-06 53.2 2.2 22 199-220 49-70 (250)
403 1vht_A Dephospho-COA kinase; s 90.7 0.13 4.4E-06 50.9 3.4 23 198-220 4-26 (218)
404 1np6_A Molybdopterin-guanine d 90.7 0.11 3.9E-06 49.1 2.7 25 197-221 5-29 (174)
405 2ehv_A Hypothetical protein PH 90.5 0.12 4.3E-06 52.2 3.1 23 198-220 30-52 (251)
406 1tue_A Replication protein E1; 90.5 0.16 5.5E-06 49.0 3.6 37 180-221 45-81 (212)
407 3b85_A Phosphate starvation-in 90.5 0.11 3.8E-06 50.9 2.5 23 199-221 23-45 (208)
408 3k1j_A LON protease, ATP-depen 90.4 0.19 6.3E-06 58.4 4.7 43 171-221 41-83 (604)
409 2q6t_A DNAB replication FORK h 90.4 0.85 2.9E-05 50.6 9.9 54 198-254 200-253 (444)
410 3lnc_A Guanylate kinase, GMP k 90.4 0.086 2.9E-06 52.8 1.7 22 199-220 28-50 (231)
411 3r20_A Cytidylate kinase; stru 90.3 0.13 4.5E-06 51.2 2.9 23 198-220 9-31 (233)
412 1ny5_A Transcriptional regulat 90.2 1.1 3.7E-05 48.6 10.5 46 172-221 138-183 (387)
413 3b5x_A Lipid A export ATP-bind 90.2 1.1 3.7E-05 51.7 11.0 23 198-220 369-391 (582)
414 3d3q_A TRNA delta(2)-isopenten 90.2 0.14 4.8E-06 53.9 3.2 22 199-220 8-29 (340)
415 3ake_A Cytidylate kinase; CMP 90.2 0.14 4.6E-06 50.2 2.9 21 200-220 4-24 (208)
416 3gfo_A Cobalt import ATP-bindi 90.2 0.14 4.7E-06 52.7 3.1 22 199-220 35-56 (275)
417 1b0u_A Histidine permease; ABC 90.1 0.14 4.8E-06 52.3 3.1 22 199-220 33-54 (262)
418 1oix_A RAS-related protein RAB 90.0 0.15 5.2E-06 49.2 3.1 25 197-221 28-52 (191)
419 2zej_A Dardarin, leucine-rich 90.0 0.14 4.9E-06 49.0 2.8 22 200-221 4-25 (184)
420 2r6a_A DNAB helicase, replicat 90.0 0.66 2.3E-05 51.6 8.7 51 198-251 203-253 (454)
421 1ji0_A ABC transporter; ATP bi 89.9 0.15 5.2E-06 51.3 3.1 22 199-220 33-54 (240)
422 2wji_A Ferrous iron transport 89.9 0.19 6.6E-06 47.0 3.6 23 199-221 4-26 (165)
423 1e4v_A Adenylate kinase; trans 89.9 0.16 5.3E-06 50.2 3.1 21 200-220 2-22 (214)
424 4g1u_C Hemin import ATP-bindin 89.9 0.15 5.2E-06 52.1 3.1 22 199-220 38-59 (266)
425 2og2_A Putative signal recogni 89.8 0.17 5.7E-06 54.1 3.5 25 197-221 156-180 (359)
426 1sgw_A Putative ABC transporte 89.8 0.13 4.6E-06 50.6 2.5 22 199-220 36-57 (214)
427 2olj_A Amino acid ABC transpor 89.8 0.16 5.4E-06 51.9 3.1 22 199-220 51-72 (263)
428 1g6h_A High-affinity branched- 89.8 0.16 5.3E-06 51.8 3.1 22 199-220 34-55 (257)
429 2ff7_A Alpha-hemolysin translo 89.7 0.16 5.5E-06 51.3 3.1 22 199-220 36-57 (247)
430 2xb4_A Adenylate kinase; ATP-b 89.7 0.16 5.4E-06 50.6 2.9 21 200-220 2-22 (223)
431 3crm_A TRNA delta(2)-isopenten 89.7 0.17 5.7E-06 53.0 3.2 22 199-220 6-27 (323)
432 3a8t_A Adenylate isopentenyltr 89.6 0.19 6.4E-06 52.8 3.6 23 198-220 40-62 (339)
433 2r9v_A ATP synthase subunit al 89.6 0.43 1.5E-05 52.6 6.5 96 182-286 164-276 (515)
434 2d2e_A SUFC protein; ABC-ATPas 89.6 0.16 5.6E-06 51.4 3.1 22 199-220 30-51 (250)
435 2vp4_A Deoxynucleoside kinase; 89.6 0.18 6.2E-06 50.4 3.3 24 197-220 19-42 (230)
436 2qe7_A ATP synthase subunit al 89.5 0.42 1.4E-05 52.7 6.2 96 182-286 151-263 (502)
437 1vpl_A ABC transporter, ATP-bi 89.5 0.17 5.9E-06 51.4 3.1 22 199-220 42-63 (256)
438 2zu0_C Probable ATP-dependent 89.4 0.17 5.9E-06 51.8 3.1 22 199-220 47-68 (267)
439 3sr0_A Adenylate kinase; phosp 89.4 0.17 5.9E-06 49.4 2.9 22 200-221 2-23 (206)
440 2ixe_A Antigen peptide transpo 89.4 0.17 5.9E-06 51.9 3.1 22 199-220 46-67 (271)
441 3exa_A TRNA delta(2)-isopenten 89.4 0.18 6.3E-06 52.2 3.2 23 198-220 3-25 (322)
442 2dyk_A GTP-binding protein; GT 89.3 0.2 6.8E-06 46.4 3.2 23 199-221 2-24 (161)
443 2ghi_A Transport protein; mult 89.3 0.18 6E-06 51.5 3.1 22 199-220 47-68 (260)
444 1ak2_A Adenylate kinase isoenz 89.3 0.17 5.9E-06 50.7 2.9 23 198-220 16-38 (233)
445 2qi9_C Vitamin B12 import ATP- 89.3 0.18 6.2E-06 50.9 3.1 22 199-220 27-48 (249)
446 3zvl_A Bifunctional polynucleo 89.2 0.18 6.3E-06 55.4 3.3 25 197-221 257-281 (416)
447 1ltq_A Polynucleotide kinase; 89.1 0.19 6.4E-06 52.6 3.2 22 199-220 3-24 (301)
448 3dzd_A Transcriptional regulat 89.1 0.58 2E-05 50.4 7.1 47 171-221 129-175 (368)
449 2eyu_A Twitching motility prot 89.1 0.19 6.7E-06 51.2 3.1 109 198-320 25-136 (261)
450 2yz2_A Putative ABC transporte 89.1 0.19 6.5E-06 51.5 3.1 22 199-220 34-55 (266)
451 1zu4_A FTSY; GTPase, signal re 89.1 0.21 7.2E-06 52.6 3.5 25 197-221 104-128 (320)
452 2nq2_C Hypothetical ABC transp 89.0 0.19 6.6E-06 50.9 3.0 23 199-221 32-54 (253)
453 3end_A Light-independent proto 89.0 0.21 7E-06 52.5 3.4 41 196-238 39-79 (307)
454 2ihy_A ABC transporter, ATP-bi 89.0 0.19 6.5E-06 51.8 3.1 22 199-220 48-69 (279)
455 1yrb_A ATP(GTP)binding protein 89.0 0.23 7.8E-06 50.7 3.7 24 197-220 13-36 (262)
456 1q3t_A Cytidylate kinase; nucl 89.0 0.19 6.5E-06 50.4 3.0 25 196-220 14-38 (236)
457 1a7j_A Phosphoribulokinase; tr 89.0 0.11 3.7E-06 54.0 1.1 24 197-220 4-27 (290)
458 3cmu_A Protein RECA, recombina 88.9 0.66 2.3E-05 60.1 8.4 84 197-287 382-471 (2050)
459 1tq4_A IIGP1, interferon-induc 88.9 0.3 1E-05 53.2 4.6 24 197-220 68-91 (413)
460 4eaq_A DTMP kinase, thymidylat 88.8 0.36 1.2E-05 48.1 4.9 24 198-221 26-49 (229)
461 2v9p_A Replication protein E1; 88.8 0.21 7E-06 52.0 3.1 23 198-220 126-148 (305)
462 3foz_A TRNA delta(2)-isopenten 88.7 0.24 8.1E-06 51.2 3.5 24 197-220 9-32 (316)
463 3bgw_A DNAB-like replicative h 88.7 1.4 4.7E-05 48.7 9.9 52 198-253 197-248 (444)
464 3mfy_A V-type ATP synthase alp 88.7 0.95 3.2E-05 50.4 8.3 59 182-249 216-275 (588)
465 2wjg_A FEOB, ferrous iron tran 88.7 0.26 8.9E-06 47.1 3.6 24 198-221 7-30 (188)
466 2f9l_A RAB11B, member RAS onco 88.7 0.24 8.1E-06 48.1 3.3 24 198-221 5-28 (199)
467 3sop_A Neuronal-specific septi 88.6 0.21 7.2E-06 51.2 3.1 21 200-220 4-24 (270)
468 3f9v_A Minichromosome maintena 88.5 0.17 6E-06 58.3 2.6 50 172-221 296-350 (595)
469 2ce2_X GTPase HRAS; signaling 88.5 0.22 7.6E-06 46.2 2.9 22 200-221 5-26 (166)
470 1tf7_A KAIC; homohexamer, hexa 88.4 0.29 9.9E-06 55.7 4.3 24 198-221 281-304 (525)
471 2v3c_C SRP54, signal recogniti 88.3 0.27 9.2E-06 54.1 3.8 25 197-221 98-122 (432)
472 1svm_A Large T antigen; AAA+ f 88.3 0.35 1.2E-05 52.1 4.6 24 197-220 168-191 (377)
473 3cmw_A Protein RECA, recombina 88.2 0.63 2.1E-05 59.5 7.5 81 199-286 384-470 (1706)
474 1nlf_A Regulatory protein REPA 88.2 0.24 8.2E-06 51.1 3.2 22 199-220 31-52 (279)
475 3vr4_D V-type sodium ATPase su 88.2 0.59 2E-05 50.9 6.3 98 182-286 140-257 (465)
476 1z2a_A RAS-related protein RAB 88.2 0.29 9.8E-06 45.6 3.5 24 198-221 5-28 (168)
477 2qmh_A HPR kinase/phosphorylas 88.1 0.26 9E-06 47.2 3.1 22 199-220 35-56 (205)
478 2fz4_A DNA repair protein RAD2 88.1 1.4 4.9E-05 43.9 8.8 100 201-314 111-226 (237)
479 3nh6_A ATP-binding cassette SU 88.1 0.2 6.8E-06 52.3 2.4 23 198-220 80-102 (306)
480 2iw3_A Elongation factor 3A; a 87.9 2.1 7.3E-05 51.6 11.5 120 199-322 462-610 (986)
481 3vkw_A Replicase large subunit 87.8 1 3.5E-05 49.1 7.9 26 195-220 158-183 (446)
482 3q72_A GTP-binding protein RAD 87.8 0.26 8.8E-06 45.9 2.9 22 200-221 4-25 (166)
483 2nzj_A GTP-binding protein REM 87.8 0.34 1.2E-05 45.5 3.7 24 198-221 4-27 (175)
484 4edh_A DTMP kinase, thymidylat 87.7 0.72 2.5E-05 45.2 6.2 24 198-221 6-29 (213)
485 2gj8_A MNME, tRNA modification 87.7 0.27 9.4E-06 46.4 3.0 23 199-221 5-27 (172)
486 3fvq_A Fe(3+) IONS import ATP- 87.6 0.27 9.4E-06 52.3 3.2 22 199-220 31-52 (359)
487 1nij_A Hypothetical protein YJ 87.6 0.29 1E-05 51.6 3.4 25 197-221 3-27 (318)
488 2lkc_A Translation initiation 87.6 0.36 1.2E-05 45.6 3.8 25 197-221 7-31 (178)
489 2bbs_A Cystic fibrosis transme 87.6 0.28 9.6E-06 50.8 3.2 23 199-221 65-87 (290)
490 2ocp_A DGK, deoxyguanosine kin 87.5 0.3 1E-05 49.1 3.4 23 199-221 3-25 (241)
491 4akg_A Glutathione S-transfera 87.5 2.3 7.9E-05 57.2 12.4 127 201-347 1270-1431(2695)
492 3gqb_B V-type ATP synthase bet 87.4 0.44 1.5E-05 51.9 4.7 100 182-286 136-260 (464)
493 1svi_A GTP-binding protein YSX 87.4 0.34 1.2E-05 46.6 3.6 25 197-221 22-46 (195)
494 3con_A GTPase NRAS; structural 87.4 0.26 8.9E-06 47.2 2.7 23 199-221 22-44 (190)
495 2ck3_A ATP synthase subunit al 87.3 0.65 2.2E-05 51.3 6.0 100 182-286 151-271 (510)
496 1fzq_A ADP-ribosylation factor 87.3 0.37 1.3E-05 45.8 3.8 25 197-221 15-39 (181)
497 1z08_A RAS-related protein RAB 87.3 0.34 1.2E-05 45.2 3.4 25 197-221 5-29 (170)
498 3kta_A Chromosome segregation 87.3 0.32 1.1E-05 46.4 3.2 22 199-220 27-48 (182)
499 2erx_A GTP-binding protein DI- 87.2 0.29 1E-05 45.8 2.9 23 199-221 4-26 (172)
500 2hxs_A RAB-26, RAS-related pro 87.2 0.43 1.5E-05 45.0 4.1 25 197-221 5-29 (178)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=2.3e-48 Score=453.27 Aligned_cols=316 Identities=20% Similarity=0.251 Sum_probs=256.2
Q ss_pred ccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhc--ccccccCCCeEEEEEeCCCC--CHHHHHHHH
Q 038751 174 RGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYN--DKDVIENFDKRIWVCVSDPF--DEFRIAKAI 249 (915)
Q Consensus 174 ~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~--~~~~~~~F~~~~wv~vs~~~--~~~~~~~~i 249 (915)
+||+.++++|.++|.... ++..++|+|+||||+||||||+++|+ +.+++.+|+.++||++++.+ +...+++.|
T Consensus 131 ~GR~~~~~~l~~~L~~~~---~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~i 207 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC---DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDI 207 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT---TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhccc---CCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHH
Confidence 599999999999996542 33579999999999999999999998 67899999999999999985 899999999
Q ss_pred HHHhhCCCC-------CcccHHHHHHHHHHHhccC-eEEEEEeCCCCCCccChhhhHHhhhcCCCCceEEEEcCchHHHh
Q 038751 250 IEGLEGSLP-------NLRELNSLLEYIHTSIKEK-KFFLILDDVWPDDYSKWEPFHNCLMNGLCGSRILVTTRKETVAR 321 (915)
Q Consensus 250 ~~~l~~~~~-------~~~~~~~~~~~l~~~l~~k-~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~ 321 (915)
+.+++.... +..+.+.+...+++.++++ ||||||||||+.+...|. . .+||+||||||+..++.
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~-------~-~~gs~ilvTTR~~~v~~ 279 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWA-------Q-ELRLRCLVTTRDVEISN 279 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHH-------H-HTTCEEEEEESBGGGGG
T ss_pred HHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhhccc-------c-cCCCEEEEEcCCHHHHH
Confidence 999986421 2234567889999999996 999999999974321122 1 27999999999999998
Q ss_pred hhcC-cCeEeCCCCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCCCchHHHHHHhHhhcCCCHHHHHHHHhhh
Q 038751 322 MMES-TDVISIKELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKGLPLAAKTIGSLLRFKKTREEWHIILNSE 400 (915)
Q Consensus 322 ~~~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~PLai~~~~~~l~~~~~~~~w~~~~~~~ 400 (915)
.++. ..++++++|++++||+||.+++|... .++.+.+++++|+++|+|+||||+++|+.++.+ + .+|...+.+.
T Consensus 280 ~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~---~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~-w~~~~~l~~~ 354 (549)
T 2a5y_B 280 AASQTCEFIEVTSLEIDECYDFLEAYGMPMP---VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-T-FEKMAQLNNK 354 (549)
T ss_dssp GCCSCEEEEECCCCCHHHHHHHHHHTSCCCC-----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-S-HHHHHHHHHH
T ss_pred HcCCCCeEEECCCCCHHHHHHHHHHHhcCCC---CchhHHHHHHHHHHHhCCChHHHHHHHHHhccc-h-HHHHHHhHHH
Confidence 8763 46899999999999999999987643 246788999999999999999999999999755 2 2333334333
Q ss_pred ccccccccccchHHHHHhhcCCChHhhhHHh-----------HhccCCCCcccChHHHHHHHHHc--CCcccCC-CccHH
Q 038751 401 MWQLEEFERGLLAPLLLSYNDLPSAIKRCFL-----------YCAVFPKDYNLDKDELVKLWMAQ--GYIEQKG-NIEME 466 (915)
Q Consensus 401 ~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~-----------~~s~fp~~~~i~~~~Li~~W~ae--g~i~~~~-~~~~e 466 (915)
.+.. ...++.+++.+||++||+++|.||+ |||+||+++.|+ +++|+|+ ||+...+ +.+.+
T Consensus 355 l~~~--~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~ 428 (549)
T 2a5y_B 355 LESR--GLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDD 428 (549)
T ss_dssp HHHH--CSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTH
T ss_pred hhcc--cHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHH
Confidence 3322 2456889999999999999999999 999999999999 8999999 9998776 66788
Q ss_pred HHHHHHHHHHHHcccccccccCCCCeeEEEechHHHHHHHHHhhhhce
Q 038751 467 MTGEWYFDFLATRSFFQEFDEEKEGTVRCKMHDIVHDFAQYLTRKEFA 514 (915)
Q Consensus 467 ~~~~~~l~~L~~~sll~~~~~~~~~~~~~~mHdlv~d~a~~~~~~e~~ 514 (915)
++++ ||++|+++|||++...+ ...+|+|||+||++|++++.++++
T Consensus 429 ~~~~-~l~~L~~rsLl~~~~~~--~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 429 EVAD-RLKRLSKRGALLSGKRM--PVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp HHHH-HHHHTTTBSSCSEEECS--SSCEEECCHHHHHHHHTTSCTHHH
T ss_pred HHHH-HHHHHHHcCCeeEecCC--CceEEEeChHHHHHHHHHHHHHHH
Confidence 8888 99999999999987653 345699999999999998887654
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=7.4e-39 Score=374.45 Aligned_cols=286 Identities=18% Similarity=0.194 Sum_probs=228.5
Q ss_pred ccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCe-EEEEEeCCCCCHHHHHHHHH
Q 038751 172 DVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDK-RIWVCVSDPFDEFRIAKAII 250 (915)
Q Consensus 172 ~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~~~~~i~ 250 (915)
..+||++++++|.++|...+ ..++|+|+||||+||||||+++|++.+++.+|+. ++||++++.++...++..|+
T Consensus 129 ~~VGRe~eLeeL~elL~~~d-----~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll 203 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLELR-----PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHCC-----SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhccC-----CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 35999999999999997531 3689999999999999999999998788899986 99999999999988888888
Q ss_pred HHhhCCC------CC-----cccHHHHHHHHHHHh---ccCeEEEEEeCCCCCCccChhhhHHhhhcCCCCceEEEEcCc
Q 038751 251 EGLEGSL------PN-----LRELNSLLEYIHTSI---KEKKFFLILDDVWPDDYSKWEPFHNCLMNGLCGSRILVTTRK 316 (915)
Q Consensus 251 ~~l~~~~------~~-----~~~~~~~~~~l~~~l---~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~ 316 (915)
+.+.... .+ ..+.+++...+++.+ .++|+||||||||+ .+.|+.+ + .||+||||||+
T Consensus 204 ~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd--~eqLe~f----~---pGSRILVTTRd 274 (1221)
T 1vt4_I 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN--AKAWNAF----N---LSCKILLTTRF 274 (1221)
T ss_dssp HHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCC--HHHHHHH----H---SSCCEEEECSC
T ss_pred HHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcCh--HHHHHhh----C---CCeEEEEeccC
Confidence 7653211 01 123455666777766 68999999999986 3445443 2 68999999999
Q ss_pred hHHHhhhcCcCeEeCC------CCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCCCchHHHHHHhHhhcCC-C
Q 038751 317 ETVARMMESTDVISIK------ELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKGLPLAAKTIGSLLRFKK-T 389 (915)
Q Consensus 317 ~~v~~~~~~~~~~~l~------~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~PLai~~~~~~l~~~~-~ 389 (915)
+.++..+.....++++ +|+++|||+||++.. +... .++..+| |+|+||||+++|+.|+.+. +
T Consensus 275 ~~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~~-------eeL~~eI---CgGLPLALkLaGs~Lr~k~~s 343 (1221)
T 1vt4_I 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCRP-------QDLPREV---LTTNPRRLSIIAESIRDGLAT 343 (1221)
T ss_dssp SHHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCCT-------TTHHHHH---CCCCHHHHHHHHHHHHHSCSS
T ss_pred hHHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHc-CCCH-------HHHHHHH---hCCCHHHHHHHHHHHhCCCCC
Confidence 9988755444456666 999999999999984 3221 1223333 9999999999999999875 6
Q ss_pred HHHHHHHHhhhccccccccccchHHHHHhhcCCChHh-hhHHhHhccCCCCcccChHHHHHHHHHcCCcccCCCccHHHH
Q 038751 390 REEWHIILNSEMWQLEEFERGLLAPLLLSYNDLPSAI-KRCFLYCAVFPKDYNLDKDELVKLWMAQGYIEQKGNIEMEMT 468 (915)
Q Consensus 390 ~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~-k~cf~~~s~fp~~~~i~~~~Li~~W~aeg~i~~~~~~~~e~~ 468 (915)
...|... ....+..+|.+||+.||++. |.||+|||+||+++.|+.+.++.+|+++| ++.
T Consensus 344 ~eeW~~~----------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG----------eed 403 (1221)
T 1vt4_I 344 WDNWKHV----------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI----------KSD 403 (1221)
T ss_dssp HHHHHHC----------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC----------SHH
T ss_pred HHHHhcC----------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC----------HHH
Confidence 7788653 13468999999999999999 99999999999999999999999999887 235
Q ss_pred HHHHHHHHHHcccccccccCCCCeeEEEechHHHHHHH
Q 038751 469 GEWYFDFLATRSFFQEFDEEKEGTVRCKMHDIVHDFAQ 506 (915)
Q Consensus 469 ~~~~l~~L~~~sll~~~~~~~~~~~~~~mHdlv~d~a~ 506 (915)
++.+|++|+++|||+.... ..+|+|||++++++.
T Consensus 404 Ae~~L~eLvdRSLLq~d~~----~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 404 VMVVVNKLHKYSLVEKQPK----ESTISIPSIYLELKV 437 (1221)
T ss_dssp HHHHHHHHHTSSSSSBCSS----SSEEBCCCHHHHHHH
T ss_pred HHHHHHHHHhhCCEEEeCC----CCEEEehHHHHHHhc
Confidence 7889999999999998422 236899999999653
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2.3e-37 Score=400.39 Aligned_cols=313 Identities=21% Similarity=0.263 Sum_probs=248.6
Q ss_pred ccccCccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhccccc-ccCC-CeEEEEEeCCCCC--H
Q 038751 167 LINVSDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDV-IENF-DKRIWVCVSDPFD--E 242 (915)
Q Consensus 167 ~~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F-~~~~wv~vs~~~~--~ 242 (915)
+..+..|+||++++++|.++|.... +..++|+|+||||+||||||+++|++.+. ..+| +.++||++++..+ .
T Consensus 120 p~~~~~~vgR~~~~~~l~~~l~~~~----~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 195 (1249)
T 3sfz_A 120 PQRPVIFVTRKKLVHAIQQKLWKLN----GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGL 195 (1249)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHTTT----TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHH
T ss_pred CCCCceeccHHHHHHHHHHHHhhcc----CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHH
Confidence 3455679999999999999997543 36799999999999999999999997543 4556 5777999998544 3
Q ss_pred HHHHHHHHHHhhCCC----CCcccHHHHHHHHHHHhccC--eEEEEEeCCCCCCccChhhhHHhhhcCCCCceEEEEcCc
Q 038751 243 FRIAKAIIEGLEGSL----PNLRELNSLLEYIHTSIKEK--KFFLILDDVWPDDYSKWEPFHNCLMNGLCGSRILVTTRK 316 (915)
Q Consensus 243 ~~~~~~i~~~l~~~~----~~~~~~~~~~~~l~~~l~~k--~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~ 316 (915)
...+..++..+.... ....+.+.+...++..+.++ |+||||||||+. ..|.. ..+|++||||||+
T Consensus 196 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~--~~~~~-------~~~~~~ilvTtR~ 266 (1249)
T 3sfz_A 196 LMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP--WVLKA-------FDNQCQILLTTRD 266 (1249)
T ss_dssp HHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH--HHHTT-------TCSSCEEEEEESS
T ss_pred HHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH--HHHHh-------hcCCCEEEEEcCC
Confidence 445667777776532 22356788889999999877 999999999853 23332 3678999999999
Q ss_pred hHHHhh-hcCcCeEeCCC-CCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCCCchHHHHHHhHhhcCCCHHHHH
Q 038751 317 ETVARM-MESTDVISIKE-LSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKGLPLAAKTIGSLLRFKKTREEWH 394 (915)
Q Consensus 317 ~~v~~~-~~~~~~~~l~~-L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~PLai~~~~~~l~~~~~~~~w~ 394 (915)
+.++.. +.....+++++ |+++++|+||...++... +.+.+++++|+++|+|+||||+.+|++|+.+. ..|.
T Consensus 267 ~~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~-----~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~ 339 (1249)
T 3sfz_A 267 KSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKK-----EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWA 339 (1249)
T ss_dssp TTTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCS-----TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHH
T ss_pred HHHHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCCh-----hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHH
Confidence 999854 45577899996 999999999999885432 23345688999999999999999999998765 3576
Q ss_pred HHHhhhcccc----c----cccccchHHHHHhhcCCChHhhhHHhHhccCCCCcccChHHHHHHHHHcCCcccCCCccHH
Q 038751 395 IILNSEMWQL----E----EFERGLLAPLLLSYNDLPSAIKRCFLYCAVFPKDYNLDKDELVKLWMAQGYIEQKGNIEME 466 (915)
Q Consensus 395 ~~~~~~~~~~----~----~~~~~~~~~l~~sy~~L~~~~k~cf~~~s~fp~~~~i~~~~Li~~W~aeg~i~~~~~~~~e 466 (915)
..++...... . ...+.+..++.+||+.||+++|.||+|||+||+++.|+++.++.+|.++ +
T Consensus 340 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~-----------~ 408 (1249)
T 3sfz_A 340 YYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE-----------T 408 (1249)
T ss_dssp HHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC-----------H
T ss_pred HHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC-----------H
Confidence 6665432211 1 1113588999999999999999999999999999999999999999654 4
Q ss_pred HHHHHHHHHHHHcccccccccCCCCeeEEEechHHHHHHHHHhhhh
Q 038751 467 MTGEWYFDFLATRSFFQEFDEEKEGTVRCKMHDIVHDFAQYLTRKE 512 (915)
Q Consensus 467 ~~~~~~l~~L~~~sll~~~~~~~~~~~~~~mHdlv~d~a~~~~~~e 512 (915)
+.++.++++|+++|||+.... ++..+|+|||+||++|+..+.++
T Consensus 409 ~~~~~~l~~L~~~sl~~~~~~--~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 409 EEVEDILQEFVNKSLLFCNRN--GKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHHHHHHHHTTSCEEEES--SSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHHhccceEEecC--CCceEEEecHHHHHHHHhhhhHH
Confidence 778899999999999997543 34567999999999999987765
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=3.9e-34 Score=338.91 Aligned_cols=306 Identities=22% Similarity=0.270 Sum_probs=234.0
Q ss_pred ccCccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhccccc-ccCC-CeEEEEEeCCCCCHHHHH
Q 038751 169 NVSDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDV-IENF-DKRIWVCVSDPFDEFRIA 246 (915)
Q Consensus 169 ~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F-~~~~wv~vs~~~~~~~~~ 246 (915)
.+..||||+.++++|.++|.... +..++|+|+||||+||||||+.++++.++ ..+| +.++|++++.. +...++
T Consensus 122 ~~~~~vGR~~~l~~L~~~L~~~~----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~ 196 (591)
T 1z6t_A 122 RPVVFVTRKKLVNAIQQKLSKLK----GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLL 196 (591)
T ss_dssp CCSSCCCCHHHHHHHHHHHTTST----TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHH
T ss_pred CCCeecccHHHHHHHHHHHhccc----CCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHH
Confidence 34579999999999999997532 35789999999999999999999997655 7889 58999999875 344444
Q ss_pred HHH---HHHhhCC----CCCcccHHHHHHHHHHHhcc--CeEEEEEeCCCCCCccChhhhHHhhhcCCCCceEEEEcCch
Q 038751 247 KAI---IEGLEGS----LPNLRELNSLLEYIHTSIKE--KKFFLILDDVWPDDYSKWEPFHNCLMNGLCGSRILVTTRKE 317 (915)
Q Consensus 247 ~~i---~~~l~~~----~~~~~~~~~~~~~l~~~l~~--k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~ 317 (915)
..+ +..+... .....+.+.+...+...+.+ +++||||||+|+. ..+ .....|++||||||+.
T Consensus 197 ~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~-----~~l----~~l~~~~~ilvTsR~~ 267 (591)
T 1z6t_A 197 MKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS-----WVL----KAFDSQCQILLTTRDK 267 (591)
T ss_dssp HHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH-----HHH----HTTCSSCEEEEEESCG
T ss_pred HHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH-----HHH----HHhcCCCeEEEECCCc
Confidence 444 3344321 12234567778888888866 7899999999852 222 2225689999999999
Q ss_pred HHHhhhcCcCeEeC---CCCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCCCchHHHHHHhHhhcCCCHHHHH
Q 038751 318 TVARMMESTDVISI---KELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKGLPLAAKTIGSLLRFKKTREEWH 394 (915)
Q Consensus 318 ~v~~~~~~~~~~~l---~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~PLai~~~~~~l~~~~~~~~w~ 394 (915)
.++..+. ...+++ ++|+.+|+++||...++... ....+.+.+|+++|+|+|||+..+|+.++.+. ..|.
T Consensus 268 ~~~~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~~-----~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w~ 339 (591)
T 1z6t_A 268 SVTDSVM-GPKYVVPVESSLGKEKGLEILSLFVNMKK-----ADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRWE 339 (591)
T ss_dssp GGGTTCC-SCEEEEECCSSCCHHHHHHHHHHHHTSCG-----GGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCHH
T ss_pred HHHHhcC-CCceEeecCCCCCHHHHHHHHHHHhCCCc-----ccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hhHH
Confidence 8876543 233443 69999999999999986421 12235678999999999999999999998764 3687
Q ss_pred HHHhhhcccc--------ccccccchHHHHHhhcCCChHhhhHHhHhccCCCCcccChHHHHHHHHHcCCcccCCCccHH
Q 038751 395 IILNSEMWQL--------EEFERGLLAPLLLSYNDLPSAIKRCFLYCAVFPKDYNLDKDELVKLWMAQGYIEQKGNIEME 466 (915)
Q Consensus 395 ~~~~~~~~~~--------~~~~~~~~~~l~~sy~~L~~~~k~cf~~~s~fp~~~~i~~~~Li~~W~aeg~i~~~~~~~~e 466 (915)
.+++...... ......+..++..||+.||++.|.||++||+||+++.|+.+.+..+|.++ .
T Consensus 340 ~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~-----------~ 408 (591)
T 1z6t_A 340 YYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME-----------T 408 (591)
T ss_dssp HHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC-----------H
T ss_pred HHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC-----------H
Confidence 7665432211 11123688899999999999999999999999999999999999999543 3
Q ss_pred HHHHHHHHHHHHcccccccccCCCCeeEEEechHHHHHHHHHh
Q 038751 467 MTGEWYFDFLATRSFFQEFDEEKEGTVRCKMHDIVHDFAQYLT 509 (915)
Q Consensus 467 ~~~~~~l~~L~~~sll~~~~~~~~~~~~~~mHdlv~d~a~~~~ 509 (915)
+.+..++++|+++|||+.... +...+|+||++||++++...
T Consensus 409 ~~~~~~l~~L~~~~Ll~~~~~--~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 409 EEVEDILQEFVNKSLLFCDRN--GKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp HHHHHHHHHHHHTTSSEEEEE--TTEEEEECCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCcCeEEecC--CCccEEEEcHHHHHHHHhhh
Confidence 457889999999999986543 34457999999999999874
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.85 E-value=4.5e-22 Score=242.36 Aligned_cols=335 Identities=18% Similarity=0.132 Sum_probs=190.3
Q ss_pred cceEEEEEEcccccc-CccccCCCCceeEEEeccCCCCceeccccchhc-cccCCcceeeecCCCCCccccccccCC---
Q 038751 533 EKLRHLMLVLGFWAK-FPFSIFDAKTLHSLILVYSSNNQVAASPVLQGL-FDQLTCLRALKIEDLPPTIKIPKGLEN--- 607 (915)
Q Consensus 533 ~~~r~Lsl~~~~~~~-~~~~~~~~~~Lr~L~l~~~~~~lrv~~~~lp~~-i~~L~~Lr~L~l~~~~~~~~lP~~i~~--- 607 (915)
..+++|++.+|.+.. .|..+..+++|++|.+.+|. ....+|.. ++++.+|++|++++|.....+|..+.+
T Consensus 294 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~-----l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~ 368 (768)
T 3rgz_A 294 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN-----FSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSA 368 (768)
T ss_dssp TTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSE-----EEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTT
T ss_pred CcCCEEECcCCcCCCccchHHhcCCCccEEECCCCc-----ccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhc
Confidence 456666666665542 45555666666666666552 11134433 555555555555554443344444444
Q ss_pred ------------------------CcCCCcccCc------ccCCcCCCCCCCCccCceeecccCCccCCCCcCCCCCcCc
Q 038751 608 ------------------------LIHLRYLKLS------MVPNGIERLTSLRTLSEFAVARVGGKYSSKSCNLEGLRPL 657 (915)
Q Consensus 608 ------------------------L~~Lr~L~l~------~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L 657 (915)
+.+|++|++. .+|..++++++|++|++..+.... .....+.++
T Consensus 369 ~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-------~~p~~l~~l 441 (768)
T 3rgz_A 369 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG-------TIPSSLGSL 441 (768)
T ss_dssp TCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEES-------CCCGGGGGC
T ss_pred CCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccC-------cccHHHhcC
Confidence 4445555432 344555556666666554433221 111223333
Q ss_pred cccccceeEcCccCCCChhhHhHhhccCCCCCCceEEEEecCCCCchhhhhhhhhHHHHhhHHHHHhhcCCCCCcceEEE
Q 038751 658 NHLRGFLQISGLGNVTDADEAKNAHLEKKKNLIDLILIFNEREESDDEKASEEMNEEKEAKHEAVCEALRPPPDIKSLEI 737 (915)
Q Consensus 658 ~~L~~~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l 737 (915)
++|+ .|.+... ......+..+..+++|+.|+++.|.... ..+..+..+++|+.|++
T Consensus 442 ~~L~-~L~L~~n----~l~~~~p~~~~~l~~L~~L~L~~N~l~~-------------------~~p~~l~~l~~L~~L~L 497 (768)
T 3rgz_A 442 SKLR-DLKLWLN----MLEGEIPQELMYVKTLETLILDFNDLTG-------------------EIPSGLSNCTNLNWISL 497 (768)
T ss_dssp TTCC-EEECCSS----CCCSCCCGGGGGCTTCCEEECCSSCCCS-------------------CCCGGGGGCTTCCEEEC
T ss_pred CCCC-EEECCCC----cccCcCCHHHcCCCCceEEEecCCcccC-------------------cCCHHHhcCCCCCEEEc
Confidence 3333 4444432 1222334456667777777777765321 12344566788888888
Q ss_pred eeeCCC-CCCCcccCccCccEEEEcCcCCCCCCCC-CCCCCCcceeeccccccceEeCcccc------------------
Q 038751 738 MVFKGR-TPSNWIGSLNKLKMLTLNSFVKCEIMPP-LGKLPSLEILRIWHMRSVKRVGDEFL------------------ 797 (915)
Q Consensus 738 ~~~~~~-~~p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~Lp~L~~L~L~~~~~l~~~~~~~~------------------ 797 (915)
++|... .+|.|++.+++|++|+|++|...+.+|. ++.+++|++|++++|.-...+|..+.
T Consensus 498 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~ 577 (768)
T 3rgz_A 498 SNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVY 577 (768)
T ss_dssp CSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEE
T ss_pred cCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccc
Confidence 888776 5688888888888888888876655553 78888888888888764434443322
Q ss_pred ----------------------------------------------------CCcccccccccccCC----CcccccCcc
Q 038751 798 ----------------------------------------------------GMEISDHIHIHGTSS----SSSVIAFPK 821 (915)
Q Consensus 798 ----------------------------------------------------~~~~l~~l~l~~~~~----~~~~~~f~~ 821 (915)
....++.+++++|.. +..++.+++
T Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~ 657 (768)
T 3rgz_A 578 IKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPY 657 (768)
T ss_dssp EECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTT
T ss_pred cccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhcccc
Confidence 123455667777643 345567788
Q ss_pred cceeeecCcccccccccCCCCcccCcccceeecccCccccCCCcCCCCCCCcCeEeEcCCcch-----------------
Q 038751 822 LQKLELTGMDELEEWDFGNDDITIMPHIKSLYITYCEKLKSLPELLLRSTTLESLTIFGVPIV----------------- 884 (915)
Q Consensus 822 L~~L~l~~~~~l~~~~~~~~~~~~lp~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~c~~l----------------- 884 (915)
|+.|+++++.-...+ +..++.+++|+.|++++|...+.+|..+.++++|++|++++|+..
T Consensus 658 L~~L~Ls~N~l~g~i---p~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~ 734 (768)
T 3rgz_A 658 LFILNLGHNDISGSI---PDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKF 734 (768)
T ss_dssp CCEEECCSSCCCSCC---CGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGG
T ss_pred CCEEeCcCCccCCCC---ChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHh
Confidence 888888776422233 233668888999999988666688888888889999988876321
Q ss_pred ----------hHhhccCCCCCcccccCCCcce
Q 038751 885 ----------QESFKRRTEKDWSKISHIPNIK 906 (915)
Q Consensus 885 ----------~~~~~~~~~~~~~~i~~ip~v~ 906 (915)
...|....+++|++|+|+|.+.
T Consensus 735 ~gN~~Lcg~~l~~C~~~~~~~~~~~~~~~~~~ 766 (768)
T 3rgz_A 735 LNNPGLCGYPLPRCDPSNADGYAHHQRSHHHH 766 (768)
T ss_dssp CSCTEEESTTSCCCCSCC--------------
T ss_pred cCCchhcCCCCcCCCCCccCCCCCCCCccccC
Confidence 0136667888999999999775
No 6
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.83 E-value=1.5e-20 Score=227.25 Aligned_cols=326 Identities=13% Similarity=0.097 Sum_probs=209.4
Q ss_pred cceEEEEEEcccccc------------------CccccC--CCCceeEEEeccCCCCceeccccchhccccCCcceeeec
Q 038751 533 EKLRHLMLVLGFWAK------------------FPFSIF--DAKTLHSLILVYSSNNQVAASPVLQGLFDQLTCLRALKI 592 (915)
Q Consensus 533 ~~~r~Lsl~~~~~~~------------------~~~~~~--~~~~Lr~L~l~~~~~~lrv~~~~lp~~i~~L~~Lr~L~l 592 (915)
..++.|++++|.+.. +|..+. .+++|++|.+.+|. ....+|..|++|++|++|++
T Consensus 448 ~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~-----l~~~iP~~l~~L~~L~~L~L 522 (876)
T 4ecn_A 448 TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCP-----NMTQLPDFLYDLPELQSLNI 522 (876)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCT-----TCCSCCGGGGGCSSCCEEEC
T ss_pred CCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCC-----CCccChHHHhCCCCCCEEEC
Confidence 678888888888876 777777 88888888888875 45667888888888888888
Q ss_pred CCCC-Ccc-ccccccCCCc-------CCCccc-----CcccCC--cCCCCCCCCccCceeecccCCccCCCCcCCCCCcC
Q 038751 593 EDLP-PTI-KIPKGLENLI-------HLRYLK-----LSMVPN--GIERLTSLRTLSEFAVARVGGKYSSKSCNLEGLRP 656 (915)
Q Consensus 593 ~~~~-~~~-~lP~~i~~L~-------~Lr~L~-----l~~lP~--~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~ 656 (915)
++|. ... .+|..+++|. +|++|+ ++.+|. .++++++|++|++..+... .+..+.+
T Consensus 523 s~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~---------~lp~~~~ 593 (876)
T 4ecn_A 523 ACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR---------HLEAFGT 593 (876)
T ss_dssp TTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC---------BCCCCCT
T ss_pred cCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc---------cchhhcC
Confidence 8876 554 5777776665 777777 446777 6778888888776544322 1113334
Q ss_pred ccccccceeEcCccCCCChhhHhHhhccCCCC-CCceEEEEecCCCCchhhhhhh---hhHHH--HhhHHHHHhh----c
Q 038751 657 LNHLRGFLQISGLGNVTDADEAKNAHLEKKKN-LIDLILIFNEREESDDEKASEE---MNEEK--EAKHEAVCEA----L 726 (915)
Q Consensus 657 L~~L~~~L~i~~l~~~~~~~~~~~~~l~~l~~-L~~L~L~~~~~~~~~~~~~~~~---~~~~~--~~~~~~~~~~----l 726 (915)
+++|+ .|.+.+.. .. ..+..+.++++ |+.|+|+.|............. ..... .......+.. +
T Consensus 594 L~~L~-~L~Ls~N~----l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l 667 (876)
T 4ecn_A 594 NVKLT-DLKLDYNQ----IE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSM 667 (876)
T ss_dssp TSEES-EEECCSSC----CS-CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCT
T ss_pred CCcce-EEECcCCc----cc-cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhh
Confidence 44444 45544311 11 23334555666 6666666654321100000000 00000 0000000011 1
Q ss_pred C--CCCCcceEEEeeeCCCCCCCccc-CccCccEEEEcCcCCCCCCCC-C--------CCCCCcceeeccccccceEeCc
Q 038751 727 R--PPPDIKSLEIMVFKGRTPSNWIG-SLNKLKMLTLNSFVKCEIMPP-L--------GKLPSLEILRIWHMRSVKRVGD 794 (915)
Q Consensus 727 ~--~~~~L~~L~l~~~~~~~~p~~~~-~l~~L~~L~L~~~~~~~~l~~-l--------~~Lp~L~~L~L~~~~~l~~~~~ 794 (915)
. ..++|+.|++++|....+|.++. .+++|+.|+|++|... .+|. + +++++|++|+|++|. +..+|.
T Consensus 668 ~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~-L~~lp~ 745 (876)
T 4ecn_A 668 DDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNK-LTSLSD 745 (876)
T ss_dssp TTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSC-CCCCCG
T ss_pred ccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCC-CccchH
Confidence 1 23478888888888888887665 7889999999888543 4443 2 234489999999886 678888
Q ss_pred ccc--CCcccccccccccCC---CcccccCcccceeeecCccccc---ccccCCCCcccCcccceeecccCccccCCCcC
Q 038751 795 EFL--GMEISDHIHIHGTSS---SSSVIAFPKLQKLELTGMDELE---EWDFGNDDITIMPHIKSLYITYCEKLKSLPEL 866 (915)
Q Consensus 795 ~~~--~~~~l~~l~l~~~~~---~~~~~~f~~L~~L~l~~~~~l~---~~~~~~~~~~~lp~L~~L~l~~c~~L~~lp~~ 866 (915)
.+. ....++.|++++|.+ +..+..+++|+.|++++++.+. .....+..+..+++|+.|++++| .++.+|..
T Consensus 746 ~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N-~L~~Ip~~ 824 (876)
T 4ecn_A 746 DFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN-DIRKVDEK 824 (876)
T ss_dssp GGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS-CCCBCCSC
T ss_pred HhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCC-CCCccCHh
Confidence 776 778899999988854 3456678899999997744111 11122334668899999999998 45889987
Q ss_pred CCCCCCcCeEeEcCCcc
Q 038751 867 LLRSTTLESLTIFGVPI 883 (915)
Q Consensus 867 l~~l~~L~~L~l~~c~~ 883 (915)
+. ++|+.|+|++||.
T Consensus 825 l~--~~L~~LdLs~N~l 839 (876)
T 4ecn_A 825 LT--PQLYILDIADNPN 839 (876)
T ss_dssp CC--SSSCEEECCSCTT
T ss_pred hc--CCCCEEECCCCCC
Confidence 65 6999999999975
No 7
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.82 E-value=1.1e-20 Score=224.75 Aligned_cols=327 Identities=12% Similarity=0.103 Sum_probs=193.2
Q ss_pred cceEEEEEEcccccc------------------CccccC--CCCceeEEEeccCCCCceeccccchhccccCCcceeeec
Q 038751 533 EKLRHLMLVLGFWAK------------------FPFSIF--DAKTLHSLILVYSSNNQVAASPVLQGLFDQLTCLRALKI 592 (915)
Q Consensus 533 ~~~r~Lsl~~~~~~~------------------~~~~~~--~~~~Lr~L~l~~~~~~lrv~~~~lp~~i~~L~~Lr~L~l 592 (915)
..+++|++++|.+.. +|..+. ++++|++|.+.+|. ....+|..|+++++|++|++
T Consensus 206 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~-----l~~~~p~~l~~l~~L~~L~L 280 (636)
T 4eco_A 206 TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCP-----NLTKLPTFLKALPEMQLINV 280 (636)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCT-----TCSSCCTTTTTCSSCCEEEC
T ss_pred cCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCc-----CCccChHHHhcCCCCCEEEC
Confidence 567788888877776 677777 78888888887775 44567777777777777777
Q ss_pred CCCC-Ccc-ccccccCCC------cCCCccc-----CcccCC--cCCCCCCCCccCceeecccCCccCCCCcCCCCCcCc
Q 038751 593 EDLP-PTI-KIPKGLENL------IHLRYLK-----LSMVPN--GIERLTSLRTLSEFAVARVGGKYSSKSCNLEGLRPL 657 (915)
Q Consensus 593 ~~~~-~~~-~lP~~i~~L------~~Lr~L~-----l~~lP~--~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L 657 (915)
++|. .+. .+|..+++| ++|++|+ ++.+|. .++++++|++|++..+.... .+..+.++
T Consensus 281 s~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g--------~ip~~~~l 352 (636)
T 4eco_A 281 ACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEG--------KLPAFGSE 352 (636)
T ss_dssp TTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEE--------ECCCCEEE
T ss_pred cCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCcc--------chhhhCCC
Confidence 7776 554 577777766 7777777 446676 67777777777665443321 11133334
Q ss_pred cccccceeEcCccCCCChhhHhHhhccCCCC-CCceEEEEecCCCCchhhhhh---hhhHH---HHhhHHHHHhhcC---
Q 038751 658 NHLRGFLQISGLGNVTDADEAKNAHLEKKKN-LIDLILIFNEREESDDEKASE---EMNEE---KEAKHEAVCEALR--- 727 (915)
Q Consensus 658 ~~L~~~L~i~~l~~~~~~~~~~~~~l~~l~~-L~~L~L~~~~~~~~~~~~~~~---~~~~~---~~~~~~~~~~~l~--- 727 (915)
++|+ .|.+.+. ... ..+..+.++++ |+.|+++.|........-... ..... ........+..+.
T Consensus 353 ~~L~-~L~L~~N----~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~ 426 (636)
T 4eco_A 353 IKLA-SLNLAYN----QIT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLD 426 (636)
T ss_dssp EEES-EEECCSS----EEE-ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTC
T ss_pred CCCC-EEECCCC----ccc-cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccc
Confidence 4444 4444331 111 22333455555 666665555422100000000 00000 0000111122233
Q ss_pred ----CCCCcceEEEeeeCCCCCCCccc-CccCccEEEEcCcCCCCCCCC-C--------CCCCCcceeeccccccceEeC
Q 038751 728 ----PPPDIKSLEIMVFKGRTPSNWIG-SLNKLKMLTLNSFVKCEIMPP-L--------GKLPSLEILRIWHMRSVKRVG 793 (915)
Q Consensus 728 ----~~~~L~~L~l~~~~~~~~p~~~~-~l~~L~~L~L~~~~~~~~l~~-l--------~~Lp~L~~L~L~~~~~l~~~~ 793 (915)
.+++|+.|++++|....+|.++. .+++|++|+|++|... .+|. . .++++|++|+|++|. ++.+|
T Consensus 427 ~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp 504 (636)
T 4eco_A 427 PTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNK-LTKLS 504 (636)
T ss_dssp SSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSC-CCBCC
T ss_pred cccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCc-CCccC
Confidence 44577777777777777766543 5778888888777543 4443 1 123378888887776 56777
Q ss_pred cccc--CCcccccccccccCCC---cccccCcccceeeecCcccc---cccccCCCCcccCcccceeecccCccccCCCc
Q 038751 794 DEFL--GMEISDHIHIHGTSSS---SSVIAFPKLQKLELTGMDEL---EEWDFGNDDITIMPHIKSLYITYCEKLKSLPE 865 (915)
Q Consensus 794 ~~~~--~~~~l~~l~l~~~~~~---~~~~~f~~L~~L~l~~~~~l---~~~~~~~~~~~~lp~L~~L~l~~c~~L~~lp~ 865 (915)
..+. ....++.|++++|.+. ..+..+++|+.|+++++..+ ......+..+..+++|+.|++++| .++.+|.
T Consensus 505 ~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~ip~ 583 (636)
T 4eco_A 505 DDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN-DIRKVNE 583 (636)
T ss_dssp GGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS-CCCBCCS
T ss_pred hhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCC-cCCccCH
Confidence 7766 6777888888877543 34556778888888653311 111112233567888888888888 4588887
Q ss_pred CCCCCCCcCeEeEcCCcc
Q 038751 866 LLLRSTTLESLTIFGVPI 883 (915)
Q Consensus 866 ~l~~l~~L~~L~l~~c~~ 883 (915)
.+. ++|+.|++++||.
T Consensus 584 ~~~--~~L~~L~Ls~N~l 599 (636)
T 4eco_A 584 KIT--PNISVLDIKDNPN 599 (636)
T ss_dssp CCC--TTCCEEECCSCTT
T ss_pred hHh--CcCCEEECcCCCC
Confidence 655 7888888888865
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.82 E-value=1.3e-19 Score=215.41 Aligned_cols=334 Identities=13% Similarity=0.064 Sum_probs=195.4
Q ss_pred ccceEEEEEEccccccC-ccccCCCCceeEEEeccCCCCceeccccchhccccCCcceeeecCCCCCccccccccCCCcC
Q 038751 532 QEKLRHLMLVLGFWAKF-PFSIFDAKTLHSLILVYSSNNQVAASPVLQGLFDQLTCLRALKIEDLPPTIKIPKGLENLIH 610 (915)
Q Consensus 532 ~~~~r~Lsl~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~lrv~~~~lp~~i~~L~~Lr~L~l~~~~~~~~lP~~i~~L~~ 610 (915)
...+++|++++|.+... +..+.++++|++|.+.+|. .....|..|+++.+|++|++++|......|..++++++
T Consensus 32 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-----i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 106 (606)
T 3t6q_A 32 PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQ-----IYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKA 106 (606)
T ss_dssp CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCC-----CCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTT
T ss_pred CCcCcEEEccCCccCcCChhHhccCccceEEECCCCc-----cceeChhhccCccccCeeeCCCCcccccChhhhccccc
Confidence 36899999999998874 6688999999999999984 22334788999999999999999888566888999999
Q ss_pred CCcccCc-----cc-CCcCCCCCCCCccCceeecccCCccCCCCcCCCCCcCccccccceeEcCccCCCChhhHhHhhcc
Q 038751 611 LRYLKLS-----MV-PNGIERLTSLRTLSEFAVARVGGKYSSKSCNLEGLRPLNHLRGFLQISGLGNVTDADEAKNAHLE 684 (915)
Q Consensus 611 Lr~L~l~-----~l-P~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~ 684 (915)
|++|+++ .+ |..++++++|++|++..+..... .+.....+++|+ .|.+.+- ......+..+.
T Consensus 107 L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~-------~~~~~~~l~~L~-~L~L~~n----~l~~~~~~~~~ 174 (606)
T 3t6q_A 107 LKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSI-------KLPKGFPTEKLK-VLDFQNN----AIHYLSKEDMS 174 (606)
T ss_dssp CCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCC-------CCCTTCCCTTCC-EEECCSS----CCCEECHHHHH
T ss_pred ccEeeccccCcccCCcchhccCCcccEEECCCCccccc-------CcccccCCcccC-EEEcccC----cccccChhhhh
Confidence 9999954 44 56688999999998876544321 112222244444 5555441 12222234456
Q ss_pred CCCCCC--ceEEEEecCCCCchhhhhh-------------------hh-----------------------hHHH-----
Q 038751 685 KKKNLI--DLILIFNEREESDDEKASE-------------------EM-----------------------NEEK----- 715 (915)
Q Consensus 685 ~l~~L~--~L~L~~~~~~~~~~~~~~~-------------------~~-----------------------~~~~----- 715 (915)
.+.+|+ .|+++.|............ .. ....
T Consensus 175 ~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~ 254 (606)
T 3t6q_A 175 SLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEM 254 (606)
T ss_dssp TTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGS
T ss_pred hhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcC
Confidence 666777 4555444322100000000 00 0000
Q ss_pred ---------HhhHHHHHhhcCCCCCcceEEEeeeCCCCCCCcccCccCccEEEEcCcCCCCCCC-CCCCCCCcceeeccc
Q 038751 716 ---------EAKHEAVCEALRPPPDIKSLEIMVFKGRTPSNWIGSLNKLKMLTLNSFVKCEIMP-PLGKLPSLEILRIWH 785 (915)
Q Consensus 716 ---------~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~-~l~~Lp~L~~L~L~~ 785 (915)
..........+..+++|+.|++++|....+|.++..+++|++|++++|......| .++.+++|++|++++
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 334 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKG 334 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCS
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCC
Confidence 0000000112455678888888888888888888888888888888775443322 356666777777766
Q ss_pred cccceEeCcc-ccCCcccccccccccCCCc------ccccCcccceeeecCccccccccc--------------------
Q 038751 786 MRSVKRVGDE-FLGMEISDHIHIHGTSSSS------SVIAFPKLQKLELTGMDELEEWDF-------------------- 838 (915)
Q Consensus 786 ~~~l~~~~~~-~~~~~~l~~l~l~~~~~~~------~~~~f~~L~~L~l~~~~~l~~~~~-------------------- 838 (915)
|.....++.. +.....++.+++++|.... .+..+++|+.|++.++. +..+..
T Consensus 335 n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~ 413 (606)
T 3t6q_A 335 NTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE-PLSLKTEAFKECPQLELLDLAFTRLK 413 (606)
T ss_dssp CSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCS-CEEECTTTTTTCTTCSEEECTTCCEE
T ss_pred CCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCc-CCcCCHHHhcCCccCCeEECCCCcCC
Confidence 6533344433 3345556666666654322 23455666666665542 111100
Q ss_pred ---CCCCcccCcccceeecccCccccCCCcCCCCCCCcCeEeEcCCcc
Q 038751 839 ---GNDDITIMPHIKSLYITYCEKLKSLPELLLRSTTLESLTIFGVPI 883 (915)
Q Consensus 839 ---~~~~~~~lp~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~c~~ 883 (915)
.+..+..+++|+.|++++|..-...|..+..+++|++|++++|+.
T Consensus 414 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 461 (606)
T 3t6q_A 414 VKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHF 461 (606)
T ss_dssp CCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBC
T ss_pred CcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCC
Confidence 001133455555555555533223344455566666666666543
No 9
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.82 E-value=9.1e-20 Score=200.60 Aligned_cols=294 Identities=18% Similarity=0.224 Sum_probs=170.7
Q ss_pred cceEEEEEEccccccCccccCCCCceeEEEeccCCCCceeccccchhccccCCcceeeecCCCCCccccccccCCCcCCC
Q 038751 533 EKLRHLMLVLGFWAKFPFSIFDAKTLHSLILVYSSNNQVAASPVLQGLFDQLTCLRALKIEDLPPTIKIPKGLENLIHLR 612 (915)
Q Consensus 533 ~~~r~Lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~lrv~~~~lp~~i~~L~~Lr~L~l~~~~~~~~lP~~i~~L~~Lr 612 (915)
..+++|++.++.+...+ .+..+++|++|.+.+| .+..+|. ++++++|++|++++|... .+| .+.++++|+
T Consensus 44 ~~L~~L~l~~~~i~~~~-~~~~~~~L~~L~l~~n------~i~~~~~-~~~l~~L~~L~L~~n~i~-~~~-~~~~l~~L~ 113 (347)
T 4fmz_A 44 ESITKLVVAGEKVASIQ-GIEYLTNLEYLNLNGN------QITDISP-LSNLVKLTNLYIGTNKIT-DIS-ALQNLTNLR 113 (347)
T ss_dssp TTCSEEECCSSCCCCCT-TGGGCTTCCEEECCSS------CCCCCGG-GTTCTTCCEEECCSSCCC-CCG-GGTTCTTCS
T ss_pred ccccEEEEeCCccccch-hhhhcCCccEEEccCC------ccccchh-hhcCCcCCEEEccCCccc-Cch-HHcCCCcCC
Confidence 67888888888776544 4777888888888887 3555665 888888888888888765 554 588888888
Q ss_pred cccCc-----ccCCcCCCCCCCCccCceeecccCCccCCCCcCCCCCcCccccccceeEcCccCCCChhhHhHhhccCCC
Q 038751 613 YLKLS-----MVPNGIERLTSLRTLSEFAVARVGGKYSSKSCNLEGLRPLNHLRGFLQISGLGNVTDADEAKNAHLEKKK 687 (915)
Q Consensus 613 ~L~l~-----~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~l~ 687 (915)
+|+++ .+|. +..+++|++|++..+.... .+..+..+++|+ .|.+.+..- ... ..+..++
T Consensus 114 ~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~--------~~~~~~~l~~L~-~L~l~~~~~-~~~-----~~~~~l~ 177 (347)
T 4fmz_A 114 ELYLNEDNISDISP-LANLTKMYSLNLGANHNLS--------DLSPLSNMTGLN-YLTVTESKV-KDV-----TPIANLT 177 (347)
T ss_dssp EEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCC--------CCGGGTTCTTCC-EEECCSSCC-CCC-----GGGGGCT
T ss_pred EEECcCCcccCchh-hccCCceeEEECCCCCCcc--------cccchhhCCCCc-EEEecCCCc-CCc-----hhhccCC
Confidence 88844 3444 6777788887765543222 222344444444 566554321 111 1166777
Q ss_pred CCCceEEEEecCCCCchhhhhhhhhHHHHhhHHHHHhhcCCCCCcceEEEeeeCCCCCCCcccCccCccEEEEcCcCCCC
Q 038751 688 NLIDLILIFNEREESDDEKASEEMNEEKEAKHEAVCEALRPPPDIKSLEIMVFKGRTPSNWIGSLNKLKMLTLNSFVKCE 767 (915)
Q Consensus 688 ~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~ 767 (915)
+|+.|++++|.... ...+..+++|+.|++.+|.....+. +..+++|++|++++|. ..
T Consensus 178 ~L~~L~l~~n~l~~---------------------~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~-l~ 234 (347)
T 4fmz_A 178 DLYSLSLNYNQIED---------------------ISPLASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNK-IT 234 (347)
T ss_dssp TCSEEECTTSCCCC---------------------CGGGGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSC-CC
T ss_pred CCCEEEccCCcccc---------------------cccccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCc-cC
Confidence 88888887765321 1114556778888888877666554 6678888888888774 33
Q ss_pred CCCCCCCCCCcceeeccccccceEeCccccCCcccccccccccCCCc--ccccCcccceeeecCcccccccccCCCCccc
Q 038751 768 IMPPLGKLPSLEILRIWHMRSVKRVGDEFLGMEISDHIHIHGTSSSS--SVIAFPKLQKLELTGMDELEEWDFGNDDITI 845 (915)
Q Consensus 768 ~l~~l~~Lp~L~~L~L~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~--~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~ 845 (915)
.+++++.+++|++|++++|. +..++ .+.....++.+++++|.... ....+++|+.|++.++. +..... ..+..
T Consensus 235 ~~~~~~~l~~L~~L~l~~n~-l~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~-l~~~~~--~~l~~ 309 (347)
T 4fmz_A 235 DLSPLANLSQLTWLEIGTNQ-ISDIN-AVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQ-LGNEDM--EVIGG 309 (347)
T ss_dssp CCGGGTTCTTCCEEECCSSC-CCCCG-GGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC-CCGGGH--HHHHT
T ss_pred CCcchhcCCCCCEEECCCCc-cCCCh-hHhcCCCcCEEEccCCccCCChhhcCCCCCCEEECcCCc-CCCcCh--hHhhc
Confidence 44557788888888888775 44432 22233333334443332211 12344455555554442 211110 11224
Q ss_pred CcccceeecccCccccCCCcCCCCCCCcCeEeEcCCc
Q 038751 846 MPHIKSLYITYCEKLKSLPELLLRSTTLESLTIFGVP 882 (915)
Q Consensus 846 lp~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~c~ 882 (915)
+++|+.|++++|+ +..+|. +..+++|++|++++|+
T Consensus 310 l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 310 LTNLTTLFLSQNH-ITDIRP-LASLSKMDSADFANQV 344 (347)
T ss_dssp CTTCSEEECCSSS-CCCCGG-GGGCTTCSEESSSCC-
T ss_pred cccCCEEEccCCc-cccccC-hhhhhccceeehhhhc
Confidence 4555555555542 333333 3444555555555443
No 10
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.81 E-value=1.1e-20 Score=228.30 Aligned_cols=293 Identities=15% Similarity=0.120 Sum_probs=193.2
Q ss_pred cccCccccCCCCceeEEEeccCCCCceecccc------------------chhccc--cCCcceeeecCCCCCccccccc
Q 038751 545 WAKFPFSIFDAKTLHSLILVYSSNNQVAASPV------------------LQGLFD--QLTCLRALKIEDLPPTIKIPKG 604 (915)
Q Consensus 545 ~~~~~~~~~~~~~Lr~L~l~~~~~~lrv~~~~------------------lp~~i~--~L~~Lr~L~l~~~~~~~~lP~~ 604 (915)
+..+|..+.++++|++|.+.+|. +.. +|..++ +|++|++|+|++|.....+|..
T Consensus 437 L~~IP~~l~~L~~L~~L~Ls~N~------Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~ 510 (876)
T 4ecn_A 437 ITFISKAIQRLTKLQIIYFANSP------FTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF 510 (876)
T ss_dssp EEEECGGGGGCTTCCEEEEESCC------CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGG
T ss_pred ccchhHHHhcCCCCCEEECcCCc------CCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHH
Confidence 33368889999999999999984 444 899988 9999999999999877799999
Q ss_pred cCCCcCCCcccCcc--------cCCcCCCCC-------CCCccCceeecccCCccCCCCcCCCCCcCccccccceeEcCc
Q 038751 605 LENLIHLRYLKLSM--------VPNGIERLT-------SLRTLSEFAVARVGGKYSSKSCNLEGLRPLNHLRGFLQISGL 669 (915)
Q Consensus 605 i~~L~~Lr~L~l~~--------lP~~i~~L~-------~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l 669 (915)
+++|++|++|+++. +|..+++++ +|++|++..+..... +. ...+.++++|+ .|.+.+.
T Consensus 511 l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~i-----p~-~~~l~~L~~L~-~L~Ls~N 583 (876)
T 4ecn_A 511 LYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEF-----PA-SASLQKMVKLG-LLDCVHN 583 (876)
T ss_dssp GGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBC-----CC-HHHHTTCTTCC-EEECTTS
T ss_pred HhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCcc-----CC-hhhhhcCCCCC-EEECCCC
Confidence 99999999999653 555555555 899998765543320 11 00244445555 6666542
Q ss_pred cCCCChhhHhHhhccCCCCCCceEEEEecCCCCchhhhhhhhhHHHHhhHHHHHhhcCCCCC-cceEEEeeeCCCCCCCc
Q 038751 670 GNVTDADEAKNAHLEKKKNLIDLILIFNEREESDDEKASEEMNEEKEAKHEAVCEALRPPPD-IKSLEIMVFKGRTPSNW 748 (915)
Q Consensus 670 ~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~p~~ 748 (915)
. .. ..+ .+.++++|+.|+|+.|... .++..+..+++ |+.|++++|....+|.+
T Consensus 584 ~----l~-~lp-~~~~L~~L~~L~Ls~N~l~--------------------~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~ 637 (876)
T 4ecn_A 584 K----VR-HLE-AFGTNVKLTDLKLDYNQIE--------------------EIPEDFCAFTDQVEGLGFSHNKLKYIPNI 637 (876)
T ss_dssp C----CC-BCC-CCCTTSEESEEECCSSCCS--------------------CCCTTSCEECTTCCEEECCSSCCCSCCSC
T ss_pred C----cc-cch-hhcCCCcceEEECcCCccc--------------------cchHHHhhccccCCEEECcCCCCCcCchh
Confidence 2 22 223 6888999999999988632 23445667788 99999999988888988
Q ss_pred ccCcc--CccEEEEcCcCCCCCCCCCC------CCCCcceeeccccccceEeCcccc-CCcccccccccccCCCc---cc
Q 038751 749 IGSLN--KLKMLTLNSFVKCEIMPPLG------KLPSLEILRIWHMRSVKRVGDEFL-GMEISDHIHIHGTSSSS---SV 816 (915)
Q Consensus 749 ~~~l~--~L~~L~L~~~~~~~~l~~l~------~Lp~L~~L~L~~~~~l~~~~~~~~-~~~~l~~l~l~~~~~~~---~~ 816 (915)
+..++ +|+.|+|++|.....+|.+. .+++|++|+|++|. +..+|..+. ....++.|++++|.+.. ..
T Consensus 638 ~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~-L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~ 716 (876)
T 4ecn_A 638 FNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNE-IQKFPTELFATGSPISTIILSNNLMTSIPENS 716 (876)
T ss_dssp CCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSC-CCSCCHHHHHTTCCCSEEECCSCCCSCCCTTS
T ss_pred hhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCc-CCccCHHHHccCCCCCEEECCCCcCCccChHH
Confidence 77654 49999998887655444332 34567777777665 445555544 44566666666664331 10
Q ss_pred --------ccCcccceeeecCcccccccccCCCCcc--cCcccceeecccCccccCCCcCCCCCCCcCeEeEcCCc
Q 038751 817 --------IAFPKLQKLELTGMDELEEWDFGNDDIT--IMPHIKSLYITYCEKLKSLPELLLRSTTLESLTIFGVP 882 (915)
Q Consensus 817 --------~~f~~L~~L~l~~~~~l~~~~~~~~~~~--~lp~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~c~ 882 (915)
..+++|+.|+++++ ++..++ ..+. .+++|+.|++++| .+..+|..+.++++|+.|++++|+
T Consensus 717 ~~~~~~~l~nl~~L~~L~Ls~N-~L~~lp---~~l~~~~l~~L~~L~Ls~N-~L~~lp~~l~~L~~L~~L~Ls~N~ 787 (876)
T 4ecn_A 717 LKPKDGNYKNTYLLTTIDLRFN-KLTSLS---DDFRATTLPYLSNMDVSYN-CFSSFPTQPLNSSQLKAFGIRHQR 787 (876)
T ss_dssp SSCTTSCCTTGGGCCEEECCSS-CCCCCC---GGGSTTTCTTCCEEECCSS-CCSSCCCGGGGCTTCCEEECCCCB
T ss_pred hccccccccccCCccEEECCCC-CCccch---HHhhhccCCCcCEEEeCCC-CCCccchhhhcCCCCCEEECCCCC
Confidence 01226666666665 333332 1122 5566666666655 344566556666666666665543
No 11
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.81 E-value=2.5e-20 Score=227.01 Aligned_cols=320 Identities=18% Similarity=0.119 Sum_probs=218.7
Q ss_pred ccceEEEEEEccccc-cCccccCCC-CceeEEEeccCCCCceeccccchhccccCCcceeeecCCCCCccccccc-cCCC
Q 038751 532 QEKLRHLMLVLGFWA-KFPFSIFDA-KTLHSLILVYSSNNQVAASPVLQGLFDQLTCLRALKIEDLPPTIKIPKG-LENL 608 (915)
Q Consensus 532 ~~~~r~Lsl~~~~~~-~~~~~~~~~-~~Lr~L~l~~~~~~lrv~~~~lp~~i~~L~~Lr~L~l~~~~~~~~lP~~-i~~L 608 (915)
...+++|++.+|.+. ..|..+... ++|++|.+.+|. ....+|..|+++.+|++|++++|.....+|.. ++++
T Consensus 268 l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~-----l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l 342 (768)
T 3rgz_A 268 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNH-----FYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKM 342 (768)
T ss_dssp CTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSE-----EEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTC
T ss_pred cCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCc-----CCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcC
Confidence 378999999999876 467777664 999999999984 23368899999999999999999877688877 9999
Q ss_pred cCCCcccCc------ccCCcCCCCC-CCCccCceeecccCCccCCC-------------------CcCCCCCcCcccccc
Q 038751 609 IHLRYLKLS------MVPNGIERLT-SLRTLSEFAVARVGGKYSSK-------------------SCNLEGLRPLNHLRG 662 (915)
Q Consensus 609 ~~Lr~L~l~------~lP~~i~~L~-~L~~L~~~~~~~~~~~~~~~-------------------~~~l~~L~~L~~L~~ 662 (915)
++|++|+++ .+|..+.+++ +|++|++..+.......... +.....+.++++|+
T Consensus 343 ~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~- 421 (768)
T 3rgz_A 343 RGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELV- 421 (768)
T ss_dssp TTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCC-
T ss_pred CCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCC-
Confidence 999999954 5677777776 88888766543321100000 00011122222222
Q ss_pred ceeEcCccCCCChhhHhHhhccCCCCCCceEEEEecCCCCchhhhhhhhhHHHHhhHHHHHhhcCCCCCcceEEEeeeCC
Q 038751 663 FLQISGLGNVTDADEAKNAHLEKKKNLIDLILIFNEREESDDEKASEEMNEEKEAKHEAVCEALRPPPDIKSLEIMVFKG 742 (915)
Q Consensus 663 ~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 742 (915)
.|.+.+. ......+..+.++++|+.|+++.|.... ..+..+..+++|+.|++.+|..
T Consensus 422 ~L~Ls~N----~l~~~~p~~l~~l~~L~~L~L~~n~l~~-------------------~~p~~~~~l~~L~~L~L~~N~l 478 (768)
T 3rgz_A 422 SLHLSFN----YLSGTIPSSLGSLSKLRDLKLWLNMLEG-------------------EIPQELMYVKTLETLILDFNDL 478 (768)
T ss_dssp EEECCSS----EEESCCCGGGGGCTTCCEEECCSSCCCS-------------------CCCGGGGGCTTCCEEECCSSCC
T ss_pred EEECcCC----cccCcccHHHhcCCCCCEEECCCCcccC-------------------cCCHHHcCCCCceEEEecCCcc
Confidence 3333321 1112233445556666666666554221 1234455678888888888877
Q ss_pred C-CCCCcccCccCccEEEEcCcCCCCCCCC-CCCCCCcceeeccccccceEeCccccCCcccccccccccCCCc------
Q 038751 743 R-TPSNWIGSLNKLKMLTLNSFVKCEIMPP-LGKLPSLEILRIWHMRSVKRVGDEFLGMEISDHIHIHGTSSSS------ 814 (915)
Q Consensus 743 ~-~~p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~Lp~L~~L~L~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~------ 814 (915)
. .+|.++..+++|++|+|++|...+.+|. ++.+++|++|+|++|.-...+|..+.....++.+++++|....
T Consensus 479 ~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~ 558 (768)
T 3rgz_A 479 TGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 558 (768)
T ss_dssp CSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGG
T ss_pred cCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHH
Confidence 6 5688888888999999988876656654 7888899999998888666788888778888888888763321
Q ss_pred --------------------------------------------------------------------ccccCcccceee
Q 038751 815 --------------------------------------------------------------------SVIAFPKLQKLE 826 (915)
Q Consensus 815 --------------------------------------------------------------------~~~~f~~L~~L~ 826 (915)
.+..+++|+.|+
T Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~Ld 638 (768)
T 3rgz_A 559 FKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLD 638 (768)
T ss_dssp GTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEE
T ss_pred hcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEE
Confidence 112345677777
Q ss_pred ecCcccccccccCCCCcccCcccceeecccCccccCCCcCCCCCCCcCeEeEcCCcc
Q 038751 827 LTGMDELEEWDFGNDDITIMPHIKSLYITYCEKLKSLPELLLRSTTLESLTIFGVPI 883 (915)
Q Consensus 827 l~~~~~l~~~~~~~~~~~~lp~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~c~~ 883 (915)
++++.-...+ +..++.+++|+.|++++|...+.+|..+.++++|+.|++++|..
T Consensus 639 Ls~N~l~g~i---p~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l 692 (768)
T 3rgz_A 639 MSYNMLSGYI---PKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL 692 (768)
T ss_dssp CCSSCCBSCC---CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC
T ss_pred CcCCcccccC---CHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcc
Confidence 7765322222 23366888999999998866668898888899999999998854
No 12
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.81 E-value=2.5e-19 Score=213.01 Aligned_cols=357 Identities=14% Similarity=0.133 Sum_probs=176.3
Q ss_pred cceEEEEEEccccccCc-cccCCCCceeEEEeccCCCCceeccccc-hhccccCCcceeeecCCCCCccccccccCCCcC
Q 038751 533 EKLRHLMLVLGFWAKFP-FSIFDAKTLHSLILVYSSNNQVAASPVL-QGLFDQLTCLRALKIEDLPPTIKIPKGLENLIH 610 (915)
Q Consensus 533 ~~~r~Lsl~~~~~~~~~-~~~~~~~~Lr~L~l~~~~~~lrv~~~~l-p~~i~~L~~Lr~L~l~~~~~~~~lP~~i~~L~~ 610 (915)
..+++|+++++.+...+ ..+.++++|++|.+.+|. +..+ |..|+++++|++|++++|......|..+++|++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~------l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 105 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCE------IETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTS 105 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC------CCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTT
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCc------ccccCHHHhhchhhcCEeECCCCcccccChhhcCCccc
Confidence 67888888888776643 367788888888888773 3333 456777777777777777666334666777777
Q ss_pred CCcccCc-----ccC-CcCCCCCCCCccCceeecccCCccCCCCcCCCCCcCccccccceeEcCcc--CC----------
Q 038751 611 LRYLKLS-----MVP-NGIERLTSLRTLSEFAVARVGGKYSSKSCNLEGLRPLNHLRGFLQISGLG--NV---------- 672 (915)
Q Consensus 611 Lr~L~l~-----~lP-~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~--~~---------- 672 (915)
|++|+++ .+| ..++++++|++|++..+...... .+..+..+++| + .|.+.+.. .+
T Consensus 106 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~---lp~~~~~l~~L---~-~L~Ls~n~l~~~~~~~~~~l~~ 178 (606)
T 3vq2_A 106 LENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCK---LPAYFSNLTNL---V-HVDLSYNYIQTITVNDLQFLRE 178 (606)
T ss_dssp CCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCC---CCGGGGTCTTC---C-EEECCSSCCCEECTTTTHHHHH
T ss_pred CCEEEccCCccccccccccCCCCCCCEEeCCCCccccee---chHhHhhcCCC---C-EEEccCCcceecChhhhhhhhc
Confidence 7777643 333 44666777777765544332100 01122222222 2 23222210 00
Q ss_pred ------------CChhhHhHhhccCCCCCCceEEEEecCCC-------------------------Cc-----hhhhhhh
Q 038751 673 ------------TDADEAKNAHLEKKKNLIDLILIFNEREE-------------------------SD-----DEKASEE 710 (915)
Q Consensus 673 ------------~~~~~~~~~~l~~l~~L~~L~L~~~~~~~-------------------------~~-----~~~~~~~ 710 (915)
+.... .........+|+.|++++|.... .. .......
T Consensus 179 L~~~l~~L~l~~n~l~~-~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~ 257 (606)
T 3vq2_A 179 NPQVNLSLDMSLNPIDF-IQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEG 257 (606)
T ss_dssp CTTCCCEEECTTCCCCE-ECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTT
T ss_pred cccccceeeccCCCcce-eCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhh
Confidence 00000 00011111245555555543210 00 0000000
Q ss_pred hhHH--------HHhhHHHHHhhcCCCCCcceEEEeeeCCCCCCCcccCccCccEEEEcCcCCCCCCCCCCCCCCcceee
Q 038751 711 MNEE--------KEAKHEAVCEALRPPPDIKSLEIMVFKGRTPSNWIGSLNKLKMLTLNSFVKCEIMPPLGKLPSLEILR 782 (915)
Q Consensus 711 ~~~~--------~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~Lp~L~~L~ 782 (915)
.... ...........+..+++|+.|++.++....+| ++..+++|++|++++|.. +.+|.+ .+++|++|+
T Consensus 258 l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l-~~lp~~-~l~~L~~L~ 334 (606)
T 3vq2_A 258 LCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQL-KQFPTL-DLPFLKSLT 334 (606)
T ss_dssp GGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCC-SSCCCC-CCSSCCEEE
T ss_pred hhhccHhheeccccccccccccccccCCCCCEEEecCccchhhh-hccccccCCEEEcccccC-cccccC-CCCccceee
Confidence 0000 00000000111344567777777777766666 566677777777777654 556655 666666666
Q ss_pred ccccccceEe------------------------CccccCCcccccccccccCC---CcccccCcccceeeecCcccccc
Q 038751 783 IWHMRSVKRV------------------------GDEFLGMEISDHIHIHGTSS---SSSVIAFPKLQKLELTGMDELEE 835 (915)
Q Consensus 783 L~~~~~l~~~------------------------~~~~~~~~~l~~l~l~~~~~---~~~~~~f~~L~~L~l~~~~~l~~ 835 (915)
+++|..+..+ +..+.....++.+++++|.. +..+..+++|+.|++.++.-...
T Consensus 335 l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~ 414 (606)
T 3vq2_A 335 LTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRV 414 (606)
T ss_dssp EESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEEST
T ss_pred ccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCc
Confidence 6665433333 22223333444444444422 12233445555555554421111
Q ss_pred cccCCCCcccCcccceeecccCccccCCCcCCCCCCCcCeEeEcCCcchhHhhccCCCCCcccccCCCcceeccccc
Q 038751 836 WDFGNDDITIMPHIKSLYITYCEKLKSLPELLLRSTTLESLTIFGVPIVQESFKRRTEKDWSKISHIPNIKIQNIVF 912 (915)
Q Consensus 836 ~~~~~~~~~~lp~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~ip~v~~~~~~~ 912 (915)
.+. ..+..+++|+.|++++|......|..+.++++|++|++++|...... ....+.....+..+.+.+|.+
T Consensus 415 ~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~~l~~L~~L~Ls~n~l 485 (606)
T 3vq2_A 415 TEF--SAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNT----LSNVFANTTNLTFLDLSKCQL 485 (606)
T ss_dssp TTT--TTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGE----ECSCCTTCTTCCEEECTTSCC
T ss_pred cCh--hhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcc----hHHhhccCCCCCEEECCCCcC
Confidence 110 12446677777777777554456666777777777777777442111 112233445555555555543
No 13
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.81 E-value=1.7e-19 Score=201.79 Aligned_cols=297 Identities=18% Similarity=0.112 Sum_probs=221.2
Q ss_pred ccceEEEEEEccccccCccc-cCCCCceeEEEeccCCCCceeccccch-hccccCCcceeeecCCCCCccccccccCCCc
Q 038751 532 QEKLRHLMLVLGFWAKFPFS-IFDAKTLHSLILVYSSNNQVAASPVLQ-GLFDQLTCLRALKIEDLPPTIKIPKGLENLI 609 (915)
Q Consensus 532 ~~~~r~Lsl~~~~~~~~~~~-~~~~~~Lr~L~l~~~~~~lrv~~~~lp-~~i~~L~~Lr~L~l~~~~~~~~lP~~i~~L~ 609 (915)
...++++++.++.+..+|.. +..+++|++|.+.++. +..+| ..|+++++|++|+++++......|..+++++
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~------i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 117 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ------IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP 117 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSC------CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCc------ccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCC
Confidence 37889999999988876655 5789999999999883 45555 5899999999999999988744456689999
Q ss_pred CCCccc-----CcccCCcC-CCCCCCCccCceeecccCCccCCCCcCCCCCcCccccccceeEcCccCCCChhhHhHhhc
Q 038751 610 HLRYLK-----LSMVPNGI-ERLTSLRTLSEFAVARVGGKYSSKSCNLEGLRPLNHLRGFLQISGLGNVTDADEAKNAHL 683 (915)
Q Consensus 610 ~Lr~L~-----l~~lP~~i-~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l 683 (915)
+|++|+ ++.+|.++ +++++|++|++..+..... .+..+ .++++|+ .|.+.+-. ... ..+
T Consensus 118 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~---~~l~~L~-~L~l~~n~----l~~---~~~ 182 (390)
T 3o6n_A 118 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERI----EDDTF---QATTSLQ-NLQLSSNR----LTH---VDL 182 (390)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBC----CTTTT---SSCTTCC-EEECCSSC----CSB---CCG
T ss_pred CCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCcc----Chhhc---cCCCCCC-EEECCCCc----CCc---ccc
Confidence 999998 45677774 8899999998876543321 02223 3444444 56665421 111 135
Q ss_pred cCCCCCCceEEEEecCCCCchhhhhhhhhHHHHhhHHHHHhhcCCCCCcceEEEeeeCCCCCCCcccCccCccEEEEcCc
Q 038751 684 EKKKNLIDLILIFNEREESDDEKASEEMNEEKEAKHEAVCEALRPPPDIKSLEIMVFKGRTPSNWIGSLNKLKMLTLNSF 763 (915)
Q Consensus 684 ~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~ 763 (915)
..+++|+.|+++.|.. ..+..+++|+.|++++|....+|.. .+++|+.|++++|
T Consensus 183 ~~l~~L~~L~l~~n~l------------------------~~~~~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~n 236 (390)
T 3o6n_A 183 SLIPSLFHANVSYNLL------------------------STLAIPIAVEELDASHNSINVVRGP--VNVELTILKLQHN 236 (390)
T ss_dssp GGCTTCSEEECCSSCC------------------------SEEECCSSCSEEECCSSCCCEEECC--CCSSCCEEECCSS
T ss_pred ccccccceeecccccc------------------------cccCCCCcceEEECCCCeeeecccc--ccccccEEECCCC
Confidence 6678899999987742 2344567899999999887766653 3578999999988
Q ss_pred CCCCCCCCCCCCCCcceeeccccccceEeCccccCCcccccccccccCCCc---ccccCcccceeeecCcccccccccCC
Q 038751 764 VKCEIMPPLGKLPSLEILRIWHMRSVKRVGDEFLGMEISDHIHIHGTSSSS---SVIAFPKLQKLELTGMDELEEWDFGN 840 (915)
Q Consensus 764 ~~~~~l~~l~~Lp~L~~L~L~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~---~~~~f~~L~~L~l~~~~~l~~~~~~~ 840 (915)
.. ..++.++.+++|++|++++|.--...+..+.....++.|++++|.... ....+++|+.|+++++ .+..++.
T Consensus 237 ~l-~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n-~l~~~~~-- 312 (390)
T 3o6n_A 237 NL-TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHN-HLLHVER-- 312 (390)
T ss_dssp CC-CCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSS-CCCCCGG--
T ss_pred CC-cccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCC-cceecCc--
Confidence 53 445778889999999999987434446667778889999999886543 3457899999999997 4555432
Q ss_pred CCcccCcccceeecccCccccCCCcCCCCCCCcCeEeEcCCcc
Q 038751 841 DDITIMPHIKSLYITYCEKLKSLPELLLRSTTLESLTIFGVPI 883 (915)
Q Consensus 841 ~~~~~lp~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~c~~ 883 (915)
.+..+++|+.|++.+| .+..+| +..+++|+.|++++||-
T Consensus 313 -~~~~l~~L~~L~L~~N-~i~~~~--~~~~~~L~~L~l~~N~~ 351 (390)
T 3o6n_A 313 -NQPQFDRLENLYLDHN-SIVTLK--LSTHHTLKNLTLSHNDW 351 (390)
T ss_dssp -GHHHHTTCSEEECCSS-CCCCCC--CCTTCCCSEEECCSSCE
T ss_pred -cccccCcCCEEECCCC-ccceeC--chhhccCCEEEcCCCCc
Confidence 2557899999999999 577787 66789999999999875
No 14
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.80 E-value=6e-19 Score=209.67 Aligned_cols=336 Identities=17% Similarity=0.098 Sum_probs=211.9
Q ss_pred cceEEEEEEccccccC-ccccCCCCceeEEEeccCCCCceeccccc-hhccccCCcceeeecCCCCCccccccccCCCcC
Q 038751 533 EKLRHLMLVLGFWAKF-PFSIFDAKTLHSLILVYSSNNQVAASPVL-QGLFDQLTCLRALKIEDLPPTIKIPKGLENLIH 610 (915)
Q Consensus 533 ~~~r~Lsl~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~lrv~~~~l-p~~i~~L~~Lr~L~l~~~~~~~~lP~~i~~L~~ 610 (915)
..+++|++++|.+... +..+.++++|++|.+.+|. +..+ |..|+++.+|++|++++|......|..++++.+
T Consensus 56 ~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~------l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 129 (606)
T 3vq2_A 56 SELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP------IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLIT 129 (606)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC------CCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTT
T ss_pred ccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCc------ccccChhhcCCcccCCEEEccCCccccccccccCCCCC
Confidence 6788888888877654 4567788888888888773 4444 777888888888888887776333366788888
Q ss_pred CCcccCc-------ccCCcCCCCCCCCccCceeecccCCccCCCCcCCCCCcCcc------------------------c
Q 038751 611 LRYLKLS-------MVPNGIERLTSLRTLSEFAVARVGGKYSSKSCNLEGLRPLN------------------------H 659 (915)
Q Consensus 611 Lr~L~l~-------~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~------------------------~ 659 (915)
|++|+++ .+|..++++++|++|++..+...... ...+..+.+|+ +
T Consensus 130 L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~ 205 (606)
T 3vq2_A 130 LKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTIT----VNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIK 205 (606)
T ss_dssp CCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEEC----TTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCE
T ss_pred CCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecC----hhhhhhhhccccccceeeccCCCcceeCcccccCce
Confidence 8888743 35677778888888776544322110 00111111110 1
Q ss_pred cccceeEcCcc------------------------------------------------------CCCChhhHhHhhccC
Q 038751 660 LRGFLQISGLG------------------------------------------------------NVTDADEAKNAHLEK 685 (915)
Q Consensus 660 L~~~L~i~~l~------------------------------------------------------~~~~~~~~~~~~l~~ 685 (915)
|+ .|.+.+.. ..+......+ .+..
T Consensus 206 L~-~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~-~~~~ 283 (606)
T 3vq2_A 206 LH-ELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIV-KFHC 283 (606)
T ss_dssp EE-EEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGG-SCGG
T ss_pred ee-eeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheecccccccccccc-cccc
Confidence 22 22222210 0001111111 2555
Q ss_pred CCCCCceEEEEecCCCCchhhhhhhhhHHHHhhHHHHHhhcCCCCCcceEEEeeeCCCCCCCcccCccCccEEEEcCcCC
Q 038751 686 KKNLIDLILIFNEREESDDEKASEEMNEEKEAKHEAVCEALRPPPDIKSLEIMVFKGRTPSNWIGSLNKLKMLTLNSFVK 765 (915)
Q Consensus 686 l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~ 765 (915)
+++|+.|+++.+.... +..+..+++|+.|++.+|....+|.+ .+++|++|++++|..
T Consensus 284 l~~L~~L~l~~~~~~~---------------------l~~l~~~~~L~~L~l~~n~l~~lp~~--~l~~L~~L~l~~n~~ 340 (606)
T 3vq2_A 284 LANVSAMSLAGVSIKY---------------------LEDVPKHFKWQSLSIIRCQLKQFPTL--DLPFLKSLTLTMNKG 340 (606)
T ss_dssp GTTCSEEEEESCCCCC---------------------CCCCCTTCCCSEEEEESCCCSSCCCC--CCSSCCEEEEESCSS
T ss_pred CCCCCEEEecCccchh---------------------hhhccccccCCEEEcccccCcccccC--CCCccceeeccCCcC
Confidence 6677777777664321 11456667788888888877777754 666666666666532
Q ss_pred CCCC-------------------------CCCCCCCCcceeeccccccceEeCccccCCcccccccccccCCC-----cc
Q 038751 766 CEIM-------------------------PPLGKLPSLEILRIWHMRSVKRVGDEFLGMEISDHIHIHGTSSS-----SS 815 (915)
Q Consensus 766 ~~~l-------------------------~~l~~Lp~L~~L~L~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~-----~~ 815 (915)
...+ ..++.+++|++|++++|. +..++..+.....++.+++++|... ..
T Consensus 341 ~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 419 (606)
T 3vq2_A 341 SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEELQHLDFQHSTLKRVTEFSA 419 (606)
T ss_dssp CEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCS-EEEECCCCTTCTTCCEEECTTSEEESTTTTTT
T ss_pred ccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCc-cccchhhccCCCCCCeeECCCCccCCccChhh
Confidence 2211 123456777777777766 6778877778889999999998543 24
Q ss_pred cccCcccceeeecCcccccccccCCCCcccCcccceeecccCcccc-CCCcCCCCCCCcCeEeEcCCcchhHhhccCCCC
Q 038751 816 VIAFPKLQKLELTGMDELEEWDFGNDDITIMPHIKSLYITYCEKLK-SLPELLLRSTTLESLTIFGVPIVQESFKRRTEK 894 (915)
Q Consensus 816 ~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~lp~L~~L~l~~c~~L~-~lp~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~ 894 (915)
+..+++|+.|+++++. +.... +..+..+++|+.|++++|.... .+|..+.++++|++|++++|... .....
T Consensus 420 ~~~l~~L~~L~l~~n~-l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~-----~~~~~ 491 (606)
T 3vq2_A 420 FLSLEKLLYLDISYTN-TKIDF--DGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLE-----QISWG 491 (606)
T ss_dssp TTTCTTCCEEECTTSC-CEECC--TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCC-----EECTT
T ss_pred hhccccCCEEECcCCC-CCccc--hhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCC-----ccChh
Confidence 5678999999999875 32221 2336689999999999995444 27888999999999999999542 11222
Q ss_pred CcccccCCCcceeccccc
Q 038751 895 DWSKISHIPNIKIQNIVF 912 (915)
Q Consensus 895 ~~~~i~~ip~v~~~~~~~ 912 (915)
.+....++..+.+.+|.+
T Consensus 492 ~~~~l~~L~~L~Ls~N~l 509 (606)
T 3vq2_A 492 VFDTLHRLQLLNMSHNNL 509 (606)
T ss_dssp TTTTCTTCCEEECCSSCC
T ss_pred hhcccccCCEEECCCCcC
Confidence 344556666666666654
No 15
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.80 E-value=1e-19 Score=216.30 Aligned_cols=308 Identities=13% Similarity=0.093 Sum_probs=196.3
Q ss_pred ccceEEEEEEcccccc-CccccCCCCceeEEEeccCCCCceeccc--cchhccccC------CcceeeecCCCCCccccc
Q 038751 532 QEKLRHLMLVLGFWAK-FPFSIFDAKTLHSLILVYSSNNQVAASP--VLQGLFDQL------TCLRALKIEDLPPTIKIP 602 (915)
Q Consensus 532 ~~~~r~Lsl~~~~~~~-~~~~~~~~~~Lr~L~l~~~~~~lrv~~~--~lp~~i~~L------~~Lr~L~l~~~~~~~~lP 602 (915)
...+++|++.+|.+.. .|..+.++++|++|.+.+|. .+. .+|..+++| ++|++|++++|... .+|
T Consensus 248 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-----~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip 321 (636)
T 4eco_A 248 LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNR-----GISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFP 321 (636)
T ss_dssp CTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCT-----TSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCC
T ss_pred cCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCC-----CCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccC
Confidence 4678999999887543 78888899999999998874 133 366666655 66666666666665 666
Q ss_pred c--ccCCCcCCCcccC-----c-ccCCcCCCCCCCCccCceeecccCCccCCCCcCCCCCcC-cc---------------
Q 038751 603 K--GLENLIHLRYLKL-----S-MVPNGIERLTSLRTLSEFAVARVGGKYSSKSCNLEGLRP-LN--------------- 658 (915)
Q Consensus 603 ~--~i~~L~~Lr~L~l-----~-~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~-L~--------------- 658 (915)
. .++++++|++|++ . .+| .++++++|++|++..+..... +..+..+.+ |+
T Consensus 322 ~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~l-----p~~l~~l~~~L~~L~Ls~N~l~~lp~~ 395 (636)
T 4eco_A 322 VETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEI-----PANFCGFTEQVENLSFAHNKLKYIPNI 395 (636)
T ss_dssp CHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEEC-----CTTSEEECTTCCEEECCSSCCSSCCSC
T ss_pred chhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccc-----cHhhhhhcccCcEEEccCCcCcccchh
Confidence 6 6666666666663 2 445 455555555555443322110 111111111 11
Q ss_pred -------ccccceeEcCccCCCChhhHhHhhcc-------CCCCCCceEEEEecCCCCchhhhhhhhhHHHHhhHHHHH-
Q 038751 659 -------HLRGFLQISGLGNVTDADEAKNAHLE-------KKKNLIDLILIFNEREESDDEKASEEMNEEKEAKHEAVC- 723 (915)
Q Consensus 659 -------~L~~~L~i~~l~~~~~~~~~~~~~l~-------~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 723 (915)
+|+ .|.+.. +......+..+. .+.+|+.|+++.|.... ++
T Consensus 396 ~~~~~l~~L~-~L~Ls~----N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~--------------------lp~ 450 (636)
T 4eco_A 396 FDAKSVSVMS-AIDFSY----NEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISK--------------------FPK 450 (636)
T ss_dssp CCTTCSSCEE-EEECCS----SCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCS--------------------CCT
T ss_pred hhhcccCccC-EEECcC----CcCCCcchhhhcccccccccCCCCCEEECcCCccCc--------------------CCH
Confidence 122 333322 112222223343 55577777777765321 11
Q ss_pred hhcCCCCCcceEEEeeeCCCCCCCcccC--------ccCccEEEEcCcCCCCCCCC-CC--CCCCcceeeccccccceEe
Q 038751 724 EALRPPPDIKSLEIMVFKGRTPSNWIGS--------LNKLKMLTLNSFVKCEIMPP-LG--KLPSLEILRIWHMRSVKRV 792 (915)
Q Consensus 724 ~~l~~~~~L~~L~l~~~~~~~~p~~~~~--------l~~L~~L~L~~~~~~~~l~~-l~--~Lp~L~~L~L~~~~~l~~~ 792 (915)
..+..+++|+.|++++|....+|.+... +++|++|+|++|... .+|. ++ .+++|++|+|++|. +..+
T Consensus 451 ~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~-l~~i 528 (636)
T 4eco_A 451 ELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNS-FSKF 528 (636)
T ss_dssp HHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSC-CSSC
T ss_pred HHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCC-CCCc
Confidence 1123478999999999998888765442 239999999999654 5654 55 89999999999987 5568
Q ss_pred CccccCCcccccccccc------cC----CCcccccCcccceeeecCcccccccccCCCCcccCcccceeecccCccccC
Q 038751 793 GDEFLGMEISDHIHIHG------TS----SSSSVIAFPKLQKLELTGMDELEEWDFGNDDITIMPHIKSLYITYCEKLKS 862 (915)
Q Consensus 793 ~~~~~~~~~l~~l~l~~------~~----~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~lp~L~~L~l~~c~~L~~ 862 (915)
|..+.....++.|++++ |. .+..+..+++|+.|+++++. +..++.. -+++|+.|++++|+. ..
T Consensus 529 p~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~ip~~-----~~~~L~~L~Ls~N~l-~~ 601 (636)
T 4eco_A 529 PTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND-IRKVNEK-----ITPNISVLDIKDNPN-IS 601 (636)
T ss_dssp CCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-CCBCCSC-----CCTTCCEEECCSCTT-CE
T ss_pred ChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCc-CCccCHh-----HhCcCCEEECcCCCC-cc
Confidence 98888889999999954 32 24456689999999999975 4555422 348999999999964 33
Q ss_pred CC---------cCCCCCCCcCeEeEcCCcchh
Q 038751 863 LP---------ELLLRSTTLESLTIFGVPIVQ 885 (915)
Q Consensus 863 lp---------~~l~~l~~L~~L~l~~c~~l~ 885 (915)
++ .....+...+..++++||.|.
T Consensus 602 ~~~~~~~~~~~~~~~~l~~~~~~~i~~C~~L~ 633 (636)
T 4eco_A 602 IDLSYVCPYIEAGMYMLFYDKTQDIRGCDALD 633 (636)
T ss_dssp EECTTTHHHHHTTCCEEECCTTSEEESCGGGC
T ss_pred ccHHhcchhhhcccceeecCCccccCCCcccc
Confidence 22 122233445677899998863
No 16
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.79 E-value=5.5e-19 Score=207.69 Aligned_cols=327 Identities=18% Similarity=0.098 Sum_probs=202.1
Q ss_pred cceEEEEEEccccccCc-cccCCCCceeEEEeccCCCCceeccccc-hhccccCCcceeeecCCCCCccccccccCCCcC
Q 038751 533 EKLRHLMLVLGFWAKFP-FSIFDAKTLHSLILVYSSNNQVAASPVL-QGLFDQLTCLRALKIEDLPPTIKIPKGLENLIH 610 (915)
Q Consensus 533 ~~~r~Lsl~~~~~~~~~-~~~~~~~~Lr~L~l~~~~~~lrv~~~~l-p~~i~~L~~Lr~L~l~~~~~~~~lP~~i~~L~~ 610 (915)
..+++|++++|.+...+ ..+..+++|++|.+.+|. +..+ |..|+++++|++|++++|... .+|.. .+.+
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~------l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~ 122 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNR------IRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMAS 122 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCC------CCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTT
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCC------CCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--cccc
Confidence 78999999999988755 578999999999999884 4445 678999999999999999887 88887 8999
Q ss_pred CCcccC-----ccc--CCcCCCCCCCCccCceeecccCCccCCCCcCCCCCcCccccccceeEcCccC----C-------
Q 038751 611 LRYLKL-----SMV--PNGIERLTSLRTLSEFAVARVGGKYSSKSCNLEGLRPLNHLRGFLQISGLGN----V------- 672 (915)
Q Consensus 611 Lr~L~l-----~~l--P~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~----~------- 672 (915)
|++|++ ..+ |..++++++|++|++..+.... ..+..+.+| +|+ .|.+.+... .
T Consensus 123 L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~-------~~~~~l~~L-~L~-~L~L~~n~l~~~~~~~~~l~~ 193 (562)
T 3a79_B 123 LRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ-------LDLLPVAHL-HLS-CILLDLVSYHIKGGETESLQI 193 (562)
T ss_dssp CSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT-------TTTGGGTTS-CEE-EEEEEESSCCCCSSSCCEEEE
T ss_pred CCEEECCCCCccccCchHhhcccCcccEEecCCCcccc-------Cchhhhhhc-eee-EEEeecccccccccCcccccc
Confidence 999984 344 3678899999999877644322 122333333 112 222221000 0
Q ss_pred -------------------------------------CC----hhhHhHhhccC--------------------------
Q 038751 673 -------------------------------------TD----ADEAKNAHLEK-------------------------- 685 (915)
Q Consensus 673 -------------------------------------~~----~~~~~~~~l~~-------------------------- 685 (915)
+. ........+..
T Consensus 194 l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~ 273 (562)
T 3a79_B 194 PNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFF 273 (562)
T ss_dssp CCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHH
T ss_pred cCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhh
Confidence 00 00000011111
Q ss_pred -CCCCCceEEEEecCCCCchhhh-------hhhh-------h--HHHHhhHHHHHhh------------------cCCCC
Q 038751 686 -KKNLIDLILIFNEREESDDEKA-------SEEM-------N--EEKEAKHEAVCEA------------------LRPPP 730 (915)
Q Consensus 686 -l~~L~~L~L~~~~~~~~~~~~~-------~~~~-------~--~~~~~~~~~~~~~------------------l~~~~ 730 (915)
..+|+.|+++.|......+... .... . ..........+.. ...++
T Consensus 274 ~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~ 353 (562)
T 3a79_B 274 WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPS 353 (562)
T ss_dssp TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCC
T ss_pred hcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCC
Confidence 1256666666554221000000 0000 0 0000000000000 04567
Q ss_pred CcceEEEeeeCCCC-CCCcccCccCccEEEEcCcCCCCCCC----CCCCCCCcceeeccccccceEeCcc-ccCCccccc
Q 038751 731 DIKSLEIMVFKGRT-PSNWIGSLNKLKMLTLNSFVKCEIMP----PLGKLPSLEILRIWHMRSVKRVGDE-FLGMEISDH 804 (915)
Q Consensus 731 ~L~~L~l~~~~~~~-~p~~~~~l~~L~~L~L~~~~~~~~l~----~l~~Lp~L~~L~L~~~~~l~~~~~~-~~~~~~l~~ 804 (915)
+|+.|++++|.... .|.+++.+++|+.|+|++|.. ..++ .++.+++|++|++++|.-...++.. +.....++.
T Consensus 354 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~ 432 (562)
T 3a79_B 354 SFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGL-KNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILV 432 (562)
T ss_dssp CCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCC-CBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCE
T ss_pred CceEEECCCCccccchhhhhcccCCCCEEECCCCCc-CCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCE
Confidence 78888888777665 577777888888888887743 3332 3677888888888887633326554 445677888
Q ss_pred ccccccCCCcc-cccC-cccceeeecCcccccccccCCCCcccCcccceeecccCccccCCCcC-CCCCCCcCeEeEcCC
Q 038751 805 IHIHGTSSSSS-VIAF-PKLQKLELTGMDELEEWDFGNDDITIMPHIKSLYITYCEKLKSLPEL-LLRSTTLESLTIFGV 881 (915)
Q Consensus 805 l~l~~~~~~~~-~~~f-~~L~~L~l~~~~~l~~~~~~~~~~~~lp~L~~L~l~~c~~L~~lp~~-l~~l~~L~~L~l~~c 881 (915)
+++++|..... ...+ ++|+.|+++++ .+..++. .+..+++|+.|++++| ++..+|.. +..+++|+.|++++|
T Consensus 433 L~l~~n~l~~~~~~~l~~~L~~L~L~~N-~l~~ip~---~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N 507 (562)
T 3a79_B 433 LNLSSNMLTGSVFRCLPPKVKVLDLHNN-RIMSIPK---DVTHLQALQELNVASN-QLKSVPDGVFDRLTSLQYIWLHDN 507 (562)
T ss_dssp EECCSSCCCGGGGSSCCTTCSEEECCSS-CCCCCCT---TTTSSCCCSEEECCSS-CCCCCCTTSTTTCTTCCCEECCSC
T ss_pred EECCCCCCCcchhhhhcCcCCEEECCCC-cCcccCh---hhcCCCCCCEEECCCC-CCCCCCHHHHhcCCCCCEEEecCC
Confidence 88888876432 2334 58888888876 4555432 2447888999999888 67788876 788888999998887
Q ss_pred cc
Q 038751 882 PI 883 (915)
Q Consensus 882 ~~ 883 (915)
|-
T Consensus 508 ~~ 509 (562)
T 3a79_B 508 PW 509 (562)
T ss_dssp CB
T ss_pred Cc
Confidence 63
No 17
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.79 E-value=1.4e-18 Score=199.09 Aligned_cols=291 Identities=20% Similarity=0.223 Sum_probs=187.8
Q ss_pred cceEEEEEEccccccCccccCCCCceeEEEeccCCCCceeccccchhccccCCcceeeecCCCCCccccccccCCCcCCC
Q 038751 533 EKLRHLMLVLGFWAKFPFSIFDAKTLHSLILVYSSNNQVAASPVLQGLFDQLTCLRALKIEDLPPTIKIPKGLENLIHLR 612 (915)
Q Consensus 533 ~~~r~Lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~lrv~~~~lp~~i~~L~~Lr~L~l~~~~~~~~lP~~i~~L~~Lr 612 (915)
..+++|+++++.+...+. +..+++|++|.+.++ .+..++. ++++.+|++|++++|... .+|. +.++++|+
T Consensus 68 ~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n------~l~~~~~-~~~l~~L~~L~L~~n~l~-~~~~-~~~l~~L~ 137 (466)
T 1o6v_A 68 NNLTQINFSNNQLTDITP-LKNLTKLVDILMNNN------QIADITP-LANLTNLTGLTLFNNQIT-DIDP-LKNLTNLN 137 (466)
T ss_dssp TTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS------CCCCCGG-GTTCTTCCEEECCSSCCC-CCGG-GTTCTTCS
T ss_pred cCCCEEECCCCccCCchh-hhccccCCEEECCCC------ccccChh-hcCCCCCCEEECCCCCCC-CChH-HcCCCCCC
Confidence 556666666666554443 666666666666665 2344444 666667777776666554 4444 66666666
Q ss_pred cccC-----cccCCcCCCCCCCCccCceeecccCCccCCCCcCCCCCcCccccccceeEcCccCCCChhhHhHhhccCCC
Q 038751 613 YLKL-----SMVPNGIERLTSLRTLSEFAVARVGGKYSSKSCNLEGLRPLNHLRGFLQISGLGNVTDADEAKNAHLEKKK 687 (915)
Q Consensus 613 ~L~l-----~~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~l~ 687 (915)
+|++ +.+| .++.+++|++|.+.. .. ..+..+.++++|+ .|.+.+.. +... ..+..++
T Consensus 138 ~L~l~~n~l~~~~-~~~~l~~L~~L~l~~-~~---------~~~~~~~~l~~L~-~L~l~~n~-l~~~-----~~l~~l~ 199 (466)
T 1o6v_A 138 RLELSSNTISDIS-ALSGLTSLQQLSFGN-QV---------TDLKPLANLTTLE-RLDISSNK-VSDI-----SVLAKLT 199 (466)
T ss_dssp EEEEEEEEECCCG-GGTTCTTCSEEEEEE-SC---------CCCGGGTTCTTCC-EEECCSSC-CCCC-----GGGGGCT
T ss_pred EEECCCCccCCCh-hhccCCcccEeecCC-cc---------cCchhhccCCCCC-EEECcCCc-CCCC-----hhhccCC
Confidence 6663 2333 356666666665431 11 1112233444444 55554422 1111 2366777
Q ss_pred CCCceEEEEecCCCCchhhhhhhhhHHHHhhHHHHHhhcCCCCCcceEEEeeeCCCCCCCcccCccCccEEEEcCcCCCC
Q 038751 688 NLIDLILIFNEREESDDEKASEEMNEEKEAKHEAVCEALRPPPDIKSLEIMVFKGRTPSNWIGSLNKLKMLTLNSFVKCE 767 (915)
Q Consensus 688 ~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~ 767 (915)
+|+.|+++.|.... ...+..+++|+.|++++|....++ ++..+++|++|++++|.. .
T Consensus 200 ~L~~L~l~~n~l~~---------------------~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l-~ 256 (466)
T 1o6v_A 200 NLESLIATNNQISD---------------------ITPLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQI-S 256 (466)
T ss_dssp TCSEEECCSSCCCC---------------------CGGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCC-C
T ss_pred CCCEEEecCCcccc---------------------cccccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCcc-c
Confidence 78888887765321 011344678888888888776664 467888999999988854 3
Q ss_pred CCCCCCCCCCcceeeccccccceEeCccccCCcccccccccccCCCc--ccccCcccceeeecCcccccccccCCCCccc
Q 038751 768 IMPPLGKLPSLEILRIWHMRSVKRVGDEFLGMEISDHIHIHGTSSSS--SVIAFPKLQKLELTGMDELEEWDFGNDDITI 845 (915)
Q Consensus 768 ~l~~l~~Lp~L~~L~L~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~--~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~ 845 (915)
.+++++.+++|++|++++|. +..++. +.....++.|++++|.... .+..+++|+.|+++++. +..+.. +..
T Consensus 257 ~~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~-l~~~~~----~~~ 329 (466)
T 1o6v_A 257 NLAPLSGLTKLTELKLGANQ-ISNISP-LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNN-ISDISP----VSS 329 (466)
T ss_dssp CCGGGTTCTTCSEEECCSSC-CCCCGG-GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSC-CSCCGG----GGG
T ss_pred cchhhhcCCCCCEEECCCCc-cCcccc-ccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCc-CCCchh----hcc
Confidence 44558888999999998876 555554 5667788888888886543 35678899999998874 443321 447
Q ss_pred CcccceeecccCccccCCCcCCCCCCCcCeEeEcCCcc
Q 038751 846 MPHIKSLYITYCEKLKSLPELLLRSTTLESLTIFGVPI 883 (915)
Q Consensus 846 lp~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~c~~ 883 (915)
+++|+.|++.+| .+..+| .+.++++|+.|++++|+.
T Consensus 330 l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n~l 365 (466)
T 1o6v_A 330 LTKLQRLFFYNN-KVSDVS-SLANLTNINWLSAGHNQI 365 (466)
T ss_dssp CTTCCEEECCSS-CCCCCG-GGTTCTTCCEEECCSSCC
T ss_pred CccCCEeECCCC-ccCCch-hhccCCCCCEEeCCCCcc
Confidence 899999999988 577775 577899999999999865
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.79 E-value=3.2e-19 Score=207.76 Aligned_cols=97 Identities=19% Similarity=0.184 Sum_probs=77.7
Q ss_pred cceEEEEEEccccccCc-cccCCCCceeEEEeccCCCCceeccccc-hhccccCCcceeeecCCCCCccccccccCCCcC
Q 038751 533 EKLRHLMLVLGFWAKFP-FSIFDAKTLHSLILVYSSNNQVAASPVL-QGLFDQLTCLRALKIEDLPPTIKIPKGLENLIH 610 (915)
Q Consensus 533 ~~~r~Lsl~~~~~~~~~-~~~~~~~~Lr~L~l~~~~~~lrv~~~~l-p~~i~~L~~Lr~L~l~~~~~~~~lP~~i~~L~~ 610 (915)
..+++|++++|.+...+ ..+..+++|++|.+.+|. +..+ |..|+++++|++|++++|... .+|.. .+.+
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~------l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~ 91 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNR------IQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVN 91 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSC------CCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCc------cCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCC
Confidence 78999999999887644 578889999999999884 4444 778999999999999988877 78877 8889
Q ss_pred CCcccCc-----c--cCCcCCCCCCCCccCceeec
Q 038751 611 LRYLKLS-----M--VPNGIERLTSLRTLSEFAVA 638 (915)
Q Consensus 611 Lr~L~l~-----~--lP~~i~~L~~L~~L~~~~~~ 638 (915)
|++|+++ . +|..++++++|++|++..+.
T Consensus 92 L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~ 126 (520)
T 2z7x_B 92 LKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH 126 (520)
T ss_dssp CSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS
T ss_pred ccEEeccCCccccccchhhhccCCcceEEEecCcc
Confidence 9998843 3 46678888888888876654
No 19
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.79 E-value=7.7e-19 Score=206.15 Aligned_cols=99 Identities=24% Similarity=0.224 Sum_probs=70.1
Q ss_pred cceEEEEEEccccccC-ccccCCCCceeEEEeccCCCCceeccccc-hhccccCCcceeeecCCCCCcccccc-ccCCCc
Q 038751 533 EKLRHLMLVLGFWAKF-PFSIFDAKTLHSLILVYSSNNQVAASPVL-QGLFDQLTCLRALKIEDLPPTIKIPK-GLENLI 609 (915)
Q Consensus 533 ~~~r~Lsl~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~lrv~~~~l-p~~i~~L~~Lr~L~l~~~~~~~~lP~-~i~~L~ 609 (915)
..+++|++++|.+... +..+..+++|++|.+.+|. +..+ |..|+++.+|++|++++|... .+|. .+++++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~------i~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~ 98 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR------INTIEGDAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLS 98 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSC------CCEECTTTTTTCTTCCEEECTTSCCC-SCCHHHHTTCT
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCC------cCccChhhccccccCCEEECCCCccC-ccCHHHhccCC
Confidence 6788888888887653 4567888888888888874 3333 366778888888888877766 4444 477888
Q ss_pred CCCcccCc-------ccCCcCCCCCCCCccCceeec
Q 038751 610 HLRYLKLS-------MVPNGIERLTSLRTLSEFAVA 638 (915)
Q Consensus 610 ~Lr~L~l~-------~lP~~i~~L~~L~~L~~~~~~ 638 (915)
+|++|+++ ..|..++++++|++|++..+.
T Consensus 99 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~ 134 (549)
T 2z81_A 99 SLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVE 134 (549)
T ss_dssp TCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESS
T ss_pred CCcEEECCCCcccccchhhhhhccCCccEEECCCCc
Confidence 88888743 234567777777777766543
No 20
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.79 E-value=1.5e-18 Score=198.50 Aligned_cols=319 Identities=18% Similarity=0.151 Sum_probs=206.9
Q ss_pred ccceEEEEEEccccccC-ccccCCCCceeEEEeccCCCCceeccccc-hhccccCCcceeeecCCCCCccccccccCCCc
Q 038751 532 QEKLRHLMLVLGFWAKF-PFSIFDAKTLHSLILVYSSNNQVAASPVL-QGLFDQLTCLRALKIEDLPPTIKIPKGLENLI 609 (915)
Q Consensus 532 ~~~~r~Lsl~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~lrv~~~~l-p~~i~~L~~Lr~L~l~~~~~~~~lP~~i~~L~ 609 (915)
...+++|+++++.+... +..+..+++|++|.+.++. ....+ |..|+++++|++|++++|......|..+++|+
T Consensus 29 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-----~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 103 (455)
T 3v47_A 29 PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQT-----PGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLA 103 (455)
T ss_dssp CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCS-----TTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCT
T ss_pred CCccCEEEecCCccCcCChhHhccCccccEEECcCCc-----ccceECcccccccccCCEEeCCCCccCccChhhccCcc
Confidence 37899999999988764 6778999999999999884 22233 56789999999999999888755688899999
Q ss_pred CCCcccCcc------cCCc--CCCCCCCCccCceeecccCCccCCCCcCCCCCcCccccccceeEcCccCCCChhhH---
Q 038751 610 HLRYLKLSM------VPNG--IERLTSLRTLSEFAVARVGGKYSSKSCNLEGLRPLNHLRGFLQISGLGNVTDADEA--- 678 (915)
Q Consensus 610 ~Lr~L~l~~------lP~~--i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~--- 678 (915)
+|++|+++. .|.. ++++++|++|++..+...... +.. .+.++++|+ .|.+.+..-.......
T Consensus 104 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~----~~~--~~~~l~~L~-~L~L~~n~l~~~~~~~l~~ 176 (455)
T 3v47_A 104 NLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQ----PAS--FFLNMRRFH-VLDLTFNKVKSICEEDLLN 176 (455)
T ss_dssp TCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCC----CCG--GGGGCTTCC-EEECTTCCBSCCCTTTSGG
T ss_pred cCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccC----ccc--ccCCCCccc-EEeCCCCcccccChhhhhc
Confidence 999998653 2333 788899999887765543210 111 033334444 4554431100000000
Q ss_pred ---------------------------hHhhccCCCCCCceEEEEecCCCCchhhhhhhhhHHHHhhHHHHHhhcCCCCC
Q 038751 679 ---------------------------KNAHLEKKKNLIDLILIFNEREESDDEKASEEMNEEKEAKHEAVCEALRPPPD 731 (915)
Q Consensus 679 ---------------------------~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 731 (915)
....+..+++|+.|++++|.... .....+......++
T Consensus 177 l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~----------------~~~~~~~~~~~~~~ 240 (455)
T 3v47_A 177 FQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKE----------------SMAKRFFDAIAGTK 240 (455)
T ss_dssp GTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCH----------------HHHHHHHHHTTTCC
T ss_pred cccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccc----------------cchhhhhccccccc
Confidence 00112233566777776664321 11111222223466
Q ss_pred cceEEEeeeCCCCC-----------CCccc--CccCccEEEEcCcCCCCCCC-CCCCCCCcceeeccccccceEe-Cccc
Q 038751 732 IKSLEIMVFKGRTP-----------SNWIG--SLNKLKMLTLNSFVKCEIMP-PLGKLPSLEILRIWHMRSVKRV-GDEF 796 (915)
Q Consensus 732 L~~L~l~~~~~~~~-----------p~~~~--~l~~L~~L~L~~~~~~~~l~-~l~~Lp~L~~L~L~~~~~l~~~-~~~~ 796 (915)
|+.|++.++..... +..+. ..++|++|++++|.....+| .++.+++|++|++++|. +..+ +..+
T Consensus 241 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~ 319 (455)
T 3v47_A 241 IQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNE-INKIDDNAF 319 (455)
T ss_dssp EEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSC-CCEECTTTT
T ss_pred eeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCc-ccccChhHh
Confidence 77777766532211 01111 23678888888886555444 37788888888888887 4444 4556
Q ss_pred cCCcccccccccccCCCc----ccccCcccceeeecCcccccccccCCCCcccCcccceeecccCccccCCCcC-CCCCC
Q 038751 797 LGMEISDHIHIHGTSSSS----SVIAFPKLQKLELTGMDELEEWDFGNDDITIMPHIKSLYITYCEKLKSLPEL-LLRST 871 (915)
Q Consensus 797 ~~~~~l~~l~l~~~~~~~----~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~lp~L~~L~l~~c~~L~~lp~~-l~~l~ 871 (915)
.....++.|++++|.... .+..+++|+.|+++++. +..+. +..+..+++|++|++++| ++..+|.. +..++
T Consensus 320 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~--~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~ 395 (455)
T 3v47_A 320 WGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNH-IRALG--DQSFLGLPNLKELALDTN-QLKSVPDGIFDRLT 395 (455)
T ss_dssp TTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSC-CCEEC--TTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCT
T ss_pred cCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCc-ccccC--hhhccccccccEEECCCC-ccccCCHhHhccCC
Confidence 677788888888886533 35678999999999873 44432 233668999999999998 67888864 57899
Q ss_pred CcCeEeEcCCcc
Q 038751 872 TLESLTIFGVPI 883 (915)
Q Consensus 872 ~L~~L~l~~c~~ 883 (915)
+|++|++++||-
T Consensus 396 ~L~~L~l~~N~l 407 (455)
T 3v47_A 396 SLQKIWLHTNPW 407 (455)
T ss_dssp TCCEEECCSSCB
T ss_pred cccEEEccCCCc
Confidence 999999998754
No 21
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.79 E-value=1.2e-18 Score=202.83 Aligned_cols=140 Identities=16% Similarity=0.059 Sum_probs=102.6
Q ss_pred EEEEEEccccccCccccCCCCceeEEEeccCCCCceeccccc-hhccccCCcceeeecCCCCCccccccccCCCcCCCcc
Q 038751 536 RHLMLVLGFWAKFPFSIFDAKTLHSLILVYSSNNQVAASPVL-QGLFDQLTCLRALKIEDLPPTIKIPKGLENLIHLRYL 614 (915)
Q Consensus 536 r~Lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~lrv~~~~l-p~~i~~L~~Lr~L~l~~~~~~~~lP~~i~~L~~Lr~L 614 (915)
++++++++.+..+|..+. ++|+.|.+++|. +..+ |..|+++.+|++|++++|......|..+++|++|++|
T Consensus 3 ~~l~ls~n~l~~ip~~~~--~~L~~L~Ls~n~------i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 74 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS--QKTTILNISQNY------ISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYL 74 (520)
T ss_dssp CEEECTTSCCSSCCCSCC--TTCSEEECCSSC------CCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEE
T ss_pred ceEecCCCCccccccccc--ccccEEECCCCc------ccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEE
Confidence 578888888887787665 899999999984 4444 4789999999999999999885558899999999999
Q ss_pred c-----CcccCCcCCCCCCCCccCceeecccCCccCCCCcCCCCCcCccccccceeEcCccCCCChhhHhHhhccCCCCC
Q 038751 615 K-----LSMVPNGIERLTSLRTLSEFAVARVGGKYSSKSCNLEGLRPLNHLRGFLQISGLGNVTDADEAKNAHLEKKKNL 689 (915)
Q Consensus 615 ~-----l~~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~l~~L 689 (915)
+ ++.+|.. .+++|++|++..+.... ......+.++++|+ .|.+.+.. ... ..+..+++|
T Consensus 75 ~Ls~N~l~~lp~~--~l~~L~~L~L~~N~l~~------~~~p~~~~~l~~L~-~L~L~~n~----l~~---~~~~~l~~L 138 (520)
T 2z7x_B 75 DLSHNKLVKISCH--PTVNLKHLDLSFNAFDA------LPICKEFGNMSQLK-FLGLSTTH----LEK---SSVLPIAHL 138 (520)
T ss_dssp ECCSSCCCEEECC--CCCCCSEEECCSSCCSS------CCCCGGGGGCTTCC-EEEEEESS----CCG---GGGGGGTTS
T ss_pred ecCCCceeecCcc--ccCCccEEeccCCcccc------ccchhhhccCCcce-EEEecCcc----cch---hhccccccc
Confidence 9 4567776 89999999887665432 11113344455555 66666521 111 235566677
Q ss_pred --CceEEEEecC
Q 038751 690 --IDLILIFNER 699 (915)
Q Consensus 690 --~~L~L~~~~~ 699 (915)
+.|++++|..
T Consensus 139 ~L~~L~l~~n~l 150 (520)
T 2z7x_B 139 NISKVLLVLGET 150 (520)
T ss_dssp CEEEEEEEECTT
T ss_pred eeeEEEeecccc
Confidence 9999998764
No 22
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.78 E-value=4.2e-19 Score=209.82 Aligned_cols=296 Identities=17% Similarity=0.122 Sum_probs=215.7
Q ss_pred cceEEEEEEccccccCccc-cCCCCceeEEEeccCCCCceeccccch-hccccCCcceeeecCCCCCccccccccCCCcC
Q 038751 533 EKLRHLMLVLGFWAKFPFS-IFDAKTLHSLILVYSSNNQVAASPVLQ-GLFDQLTCLRALKIEDLPPTIKIPKGLENLIH 610 (915)
Q Consensus 533 ~~~r~Lsl~~~~~~~~~~~-~~~~~~Lr~L~l~~~~~~lrv~~~~lp-~~i~~L~~Lr~L~l~~~~~~~~lP~~i~~L~~ 610 (915)
..++.+++.++.+..+|.. +..+++|++|.+.++. +..+| ..|+.+.+|++|+|++|......|..++++++
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~------l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 124 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ------IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL 124 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSC------CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCC------CCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCC
Confidence 5778899988887766654 5678999999999884 44454 58999999999999999887444455799999
Q ss_pred CCccc-----CcccCCc-CCCCCCCCccCceeecccCCccCCCCcCCCCCcCccccccceeEcCccCCCChhhHhHhhcc
Q 038751 611 LRYLK-----LSMVPNG-IERLTSLRTLSEFAVARVGGKYSSKSCNLEGLRPLNHLRGFLQISGLGNVTDADEAKNAHLE 684 (915)
Q Consensus 611 Lr~L~-----l~~lP~~-i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~ 684 (915)
|++|+ ++.+|.+ ++++++|++|++..+.... .....+.+++.|+ .|.+.+.. ... ..+.
T Consensus 125 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~-------~~~~~~~~l~~L~-~L~L~~N~----l~~---~~~~ 189 (597)
T 3oja_B 125 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER-------IEDDTFQATTSLQ-NLQLSSNR----LTH---VDLS 189 (597)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB-------CCTTTTTTCTTCC-EEECTTSC----CSB---CCGG
T ss_pred CCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCC-------CChhhhhcCCcCc-EEECcCCC----CCC---cChh
Confidence 99998 4567776 4889999999887654432 1112234444444 56665421 111 1255
Q ss_pred CCCCCCceEEEEecCCCCchhhhhhhhhHHHHhhHHHHHhhcCCCCCcceEEEeeeCCCCCCCcccCccCccEEEEcCcC
Q 038751 685 KKKNLIDLILIFNEREESDDEKASEEMNEEKEAKHEAVCEALRPPPDIKSLEIMVFKGRTPSNWIGSLNKLKMLTLNSFV 764 (915)
Q Consensus 685 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~ 764 (915)
.+++|+.|++++|.. ..+..+++|+.|++++|....+|..+ .++|+.|+|++|.
T Consensus 190 ~l~~L~~L~l~~n~l------------------------~~l~~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~ 243 (597)
T 3oja_B 190 LIPSLFHANVSYNLL------------------------STLAIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNN 243 (597)
T ss_dssp GCTTCSEEECCSSCC------------------------SEEECCTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSC
T ss_pred hhhhhhhhhcccCcc------------------------ccccCCchhheeeccCCccccccccc--CCCCCEEECCCCC
Confidence 677889998887742 23455678999999888877665443 4689999998885
Q ss_pred CCCCCCCCCCCCCcceeeccccccceEeCccccCCcccccccccccCCCc---ccccCcccceeeecCcccccccccCCC
Q 038751 765 KCEIMPPLGKLPSLEILRIWHMRSVKRVGDEFLGMEISDHIHIHGTSSSS---SVIAFPKLQKLELTGMDELEEWDFGND 841 (915)
Q Consensus 765 ~~~~l~~l~~Lp~L~~L~L~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~---~~~~f~~L~~L~l~~~~~l~~~~~~~~ 841 (915)
. ..++.++.+++|++|+|++|.--...+..+.....++.|++++|.+.. ....+|+|+.|+++++. +..++ .
T Consensus 244 l-~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~-l~~i~---~ 318 (597)
T 3oja_B 244 L-TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH-LLHVE---R 318 (597)
T ss_dssp C-CCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSC-CCCCG---G
T ss_pred C-CCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCC-CCccC---c
Confidence 3 345778888999999998887444456677778888888888886543 34568999999999874 44443 2
Q ss_pred CcccCcccceeecccCccccCCCcCCCCCCCcCeEeEcCCcc
Q 038751 842 DITIMPHIKSLYITYCEKLKSLPELLLRSTTLESLTIFGVPI 883 (915)
Q Consensus 842 ~~~~lp~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~c~~ 883 (915)
.+..+++|+.|++++| .+..+| +..+++|+.|++++||-
T Consensus 319 ~~~~l~~L~~L~L~~N-~l~~~~--~~~~~~L~~L~l~~N~~ 357 (597)
T 3oja_B 319 NQPQFDRLENLYLDHN-SIVTLK--LSTHHTLKNLTLSHNDW 357 (597)
T ss_dssp GHHHHTTCSEEECCSS-CCCCCC--CCTTCCCSEEECCSSCE
T ss_pred ccccCCCCCEEECCCC-CCCCcC--hhhcCCCCEEEeeCCCC
Confidence 2568999999999999 577776 66789999999999875
No 23
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.78 E-value=1.2e-18 Score=199.73 Aligned_cols=294 Identities=18% Similarity=0.185 Sum_probs=222.4
Q ss_pred cccceEEEEEEccccccCccccCCCCceeEEEeccCCCCceeccccchhccccCCcceeeecCCCCCccccccccCCCcC
Q 038751 531 CQEKLRHLMLVLGFWAKFPFSIFDAKTLHSLILVYSSNNQVAASPVLQGLFDQLTCLRALKIEDLPPTIKIPKGLENLIH 610 (915)
Q Consensus 531 ~~~~~r~Lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~lrv~~~~lp~~i~~L~~Lr~L~l~~~~~~~~lP~~i~~L~~ 610 (915)
....+++|++.++.+...+. +..+++|++|.+.+| .+..+|. ++++++|++|++++|... .+| .++++.+
T Consensus 88 ~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n------~l~~~~~-~~~l~~L~~L~l~~n~l~-~~~-~~~~l~~ 157 (466)
T 1o6v_A 88 NLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNN------QITDIDP-LKNLTNLNRLELSSNTIS-DIS-ALSGLTS 157 (466)
T ss_dssp TCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS------CCCCCGG-GTTCTTCSEEEEEEEEEC-CCG-GGTTCTT
T ss_pred ccccCCEEECCCCccccChh-hcCCCCCCEEECCCC------CCCCChH-HcCCCCCCEEECCCCccC-CCh-hhccCCc
Confidence 34789999999998886655 899999999999988 4556665 899999999999988766 565 4899999
Q ss_pred CCcccCc----ccCCcCCCCCCCCccCceeecccCCccCCCCcCCCCCcCccccccceeEcCccCCCChhhHhHhhccCC
Q 038751 611 LRYLKLS----MVPNGIERLTSLRTLSEFAVARVGGKYSSKSCNLEGLRPLNHLRGFLQISGLGNVTDADEAKNAHLEKK 686 (915)
Q Consensus 611 Lr~L~l~----~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~l 686 (915)
|++|++. .++ .++++++|++|++..+.... +..+.++++|+ .|.+.+..- .. . ..+..+
T Consensus 158 L~~L~l~~~~~~~~-~~~~l~~L~~L~l~~n~l~~---------~~~l~~l~~L~-~L~l~~n~l-~~---~--~~~~~l 220 (466)
T 1o6v_A 158 LQQLSFGNQVTDLK-PLANLTTLERLDISSNKVSD---------ISVLAKLTNLE-SLIATNNQI-SD---I--TPLGIL 220 (466)
T ss_dssp CSEEEEEESCCCCG-GGTTCTTCCEEECCSSCCCC---------CGGGGGCTTCS-EEECCSSCC-CC---C--GGGGGC
T ss_pred ccEeecCCcccCch-hhccCCCCCEEECcCCcCCC---------ChhhccCCCCC-EEEecCCcc-cc---c--cccccc
Confidence 9999853 333 37888999999876554322 23344555555 666665321 11 1 126678
Q ss_pred CCCCceEEEEecCCCCchhhhhhhhhHHHHhhHHHHHhhcCCCCCcceEEEeeeCCCCCCCcccCccCccEEEEcCcCCC
Q 038751 687 KNLIDLILIFNEREESDDEKASEEMNEEKEAKHEAVCEALRPPPDIKSLEIMVFKGRTPSNWIGSLNKLKMLTLNSFVKC 766 (915)
Q Consensus 687 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~ 766 (915)
++|+.|+++.|.... +..+..+++|+.|++++|.....+. +..+++|+.|++++|..
T Consensus 221 ~~L~~L~l~~n~l~~---------------------~~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l- 277 (466)
T 1o6v_A 221 TNLDELSLNGNQLKD---------------------IGTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQI- 277 (466)
T ss_dssp TTCCEEECCSSCCCC---------------------CGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCC-
T ss_pred CCCCEEECCCCCccc---------------------chhhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCcc-
Confidence 899999999886432 1345668899999999998877765 77899999999998853
Q ss_pred CCCCCCCCCCCcceeeccccccceEeCccccCCcccccccccccCCCc--ccccCcccceeeecCcccccccccCCCCcc
Q 038751 767 EIMPPLGKLPSLEILRIWHMRSVKRVGDEFLGMEISDHIHIHGTSSSS--SVIAFPKLQKLELTGMDELEEWDFGNDDIT 844 (915)
Q Consensus 767 ~~l~~l~~Lp~L~~L~L~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~--~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~ 844 (915)
..+++++.+++|++|++++|. +..++. +.....++.|++++|.... ....+++|+.|++.++ .+.... .+.
T Consensus 278 ~~~~~~~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n-~l~~~~----~l~ 350 (466)
T 1o6v_A 278 SNISPLAGLTALTNLELNENQ-LEDISP-ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNN-KVSDVS----SLA 350 (466)
T ss_dssp CCCGGGTTCTTCSEEECCSSC-CSCCGG-GGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSS-CCCCCG----GGT
T ss_pred CccccccCCCccCeEEcCCCc-ccCchh-hcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCC-ccCCch----hhc
Confidence 445568899999999999986 555544 5567789999999986543 3568999999999987 354442 256
Q ss_pred cCcccceeecccCccccCCCcCCCCCCCcCeEeEcCCcc
Q 038751 845 IMPHIKSLYITYCEKLKSLPELLLRSTTLESLTIFGVPI 883 (915)
Q Consensus 845 ~lp~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~c~~ 883 (915)
.+++|+.|++.+|. +..++. +..+++|+.|++++|+-
T Consensus 351 ~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~~ 387 (466)
T 1o6v_A 351 NLTNINWLSAGHNQ-ISDLTP-LANLTRITQLGLNDQAW 387 (466)
T ss_dssp TCTTCCEEECCSSC-CCBCGG-GTTCTTCCEEECCCEEE
T ss_pred cCCCCCEEeCCCCc-cCccch-hhcCCCCCEEeccCCcc
Confidence 89999999999995 555554 78899999999999854
No 24
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.78 E-value=1e-18 Score=207.76 Aligned_cols=179 Identities=14% Similarity=0.102 Sum_probs=105.6
Q ss_pred CCCCCcceEEEeeeCCC-CC-CCcccCccCccEEEEcCcCCCCC---CCCCCCCCCcceeeccccccceEeCccccCCcc
Q 038751 727 RPPPDIKSLEIMVFKGR-TP-SNWIGSLNKLKMLTLNSFVKCEI---MPPLGKLPSLEILRIWHMRSVKRVGDEFLGMEI 801 (915)
Q Consensus 727 ~~~~~L~~L~l~~~~~~-~~-p~~~~~l~~L~~L~L~~~~~~~~---l~~l~~Lp~L~~L~L~~~~~l~~~~~~~~~~~~ 801 (915)
..+++|+.|++.+|... .+ +..+..+++|++|++++|..... ...++.+++|++|++++|.-....+..+.....
T Consensus 322 ~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 401 (606)
T 3t6q_A 322 SNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQ 401 (606)
T ss_dssp GGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTT
T ss_pred hccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCcc
Confidence 34455555555555433 22 23355566666666665543222 223566677777777666532233444555666
Q ss_pred cccccccccCCCc-----ccccCcccceeeecCcccccccccCCCCcccCcccceeecccCccccC-C--CcCCCCCCCc
Q 038751 802 SDHIHIHGTSSSS-----SVIAFPKLQKLELTGMDELEEWDFGNDDITIMPHIKSLYITYCEKLKS-L--PELLLRSTTL 873 (915)
Q Consensus 802 l~~l~l~~~~~~~-----~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~lp~L~~L~l~~c~~L~~-l--p~~l~~l~~L 873 (915)
++.+++++|.... .+..+++|+.|++.++. +.... +..+..+++|++|++++|+.-.. + +..+..+++|
T Consensus 402 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L 478 (606)
T 3t6q_A 402 LELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSL-LDISS--EQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRL 478 (606)
T ss_dssp CSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCC-CBTTC--TTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTC
T ss_pred CCeEECCCCcCCCcccchhhhCcccCCEEECCCCc-cCCcC--HHHHhCCCCCCEEECCCCCCCccccccchhhccCCCc
Confidence 7777777764321 24567778888887763 22221 22356899999999999954331 2 3567889999
Q ss_pred CeEeEcCCcchhHhhccCCCCCcccccCCCcceecccccc
Q 038751 874 ESLTIFGVPIVQESFKRRTEKDWSKISHIPNIKIQNIVFR 913 (915)
Q Consensus 874 ~~L~l~~c~~l~~~~~~~~~~~~~~i~~ip~v~~~~~~~~ 913 (915)
++|++++|... ......+.....+..+.+.+|.+.
T Consensus 479 ~~L~Ls~n~l~-----~~~~~~~~~l~~L~~L~Ls~N~l~ 513 (606)
T 3t6q_A 479 EILVLSFCDLS-----SIDQHAFTSLKMMNHVDLSHNRLT 513 (606)
T ss_dssp CEEECTTSCCC-----EECTTTTTTCTTCCEEECCSSCCC
T ss_pred cEEECCCCccC-----ccChhhhccccCCCEEECCCCccC
Confidence 99999999542 112233455566666777766553
No 25
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.78 E-value=1.2e-18 Score=191.76 Aligned_cols=300 Identities=18% Similarity=0.233 Sum_probs=222.8
Q ss_pred cCCCCceeEEEeccCCCCceeccccchhccccCCcceeeecCCCCCccccccccCCCcCCCcccCc-----ccCCcCCCC
Q 038751 552 IFDAKTLHSLILVYSSNNQVAASPVLQGLFDQLTCLRALKIEDLPPTIKIPKGLENLIHLRYLKLS-----MVPNGIERL 626 (915)
Q Consensus 552 ~~~~~~Lr~L~l~~~~~~lrv~~~~lp~~i~~L~~Lr~L~l~~~~~~~~lP~~i~~L~~Lr~L~l~-----~lP~~i~~L 626 (915)
...+++|++|.+.++ .+..+|. ++.+++|++|++++|... .+|. +.++++|++|+++ .+| .+.++
T Consensus 40 ~~~l~~L~~L~l~~~------~i~~~~~-~~~~~~L~~L~l~~n~i~-~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l 109 (347)
T 4fmz_A 40 QEELESITKLVVAGE------KVASIQG-IEYLTNLEYLNLNGNQIT-DISP-LSNLVKLTNLYIGTNKITDIS-ALQNL 109 (347)
T ss_dssp HHHHTTCSEEECCSS------CCCCCTT-GGGCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSSCCCCCG-GGTTC
T ss_pred chhcccccEEEEeCC------ccccchh-hhhcCCccEEEccCCccc-cchh-hhcCCcCCEEEccCCcccCch-HHcCC
Confidence 346789999999987 4566664 899999999999999877 6776 9999999999954 343 58889
Q ss_pred CCCCccCceeecccCCccCCCCcCCCCCcCccccccceeEcCccCCCChhhHhHhhccCCCCCCceEEEEecCCCCchhh
Q 038751 627 TSLRTLSEFAVARVGGKYSSKSCNLEGLRPLNHLRGFLQISGLGNVTDADEAKNAHLEKKKNLIDLILIFNEREESDDEK 706 (915)
Q Consensus 627 ~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~ 706 (915)
++|++|++..+.... +..+..+++|+ .|.+.+...... ...+..+++|+.|+++.|....
T Consensus 110 ~~L~~L~l~~n~i~~---------~~~~~~l~~L~-~L~l~~n~~~~~-----~~~~~~l~~L~~L~l~~~~~~~----- 169 (347)
T 4fmz_A 110 TNLRELYLNEDNISD---------ISPLANLTKMY-SLNLGANHNLSD-----LSPLSNMTGLNYLTVTESKVKD----- 169 (347)
T ss_dssp TTCSEEECTTSCCCC---------CGGGTTCTTCC-EEECTTCTTCCC-----CGGGTTCTTCCEEECCSSCCCC-----
T ss_pred CcCCEEECcCCcccC---------chhhccCCcee-EEECCCCCCccc-----ccchhhCCCCcEEEecCCCcCC-----
Confidence 999999876544332 22244555555 677766443332 2237888999999999876432
Q ss_pred hhhhhhHHHHhhHHHHHhhcCCCCCcceEEEeeeCCCCCCCcccCccCccEEEEcCcCCCCCCCCCCCCCCcceeecccc
Q 038751 707 ASEEMNEEKEAKHEAVCEALRPPPDIKSLEIMVFKGRTPSNWIGSLNKLKMLTLNSFVKCEIMPPLGKLPSLEILRIWHM 786 (915)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~Lp~L~~L~L~~~ 786 (915)
...+..+++|+.|++++|....++. +..+++|+.|++++|. ...++.++.+++|++|++++|
T Consensus 170 ----------------~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~~~~L~~L~l~~n 231 (347)
T 4fmz_A 170 ----------------VTPIANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQ-ITDITPVANMTRLNSLKIGNN 231 (347)
T ss_dssp ----------------CGGGGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSC-CCCCGGGGGCTTCCEEECCSS
T ss_pred ----------------chhhccCCCCCEEEccCCccccccc-ccCCCccceeecccCC-CCCCchhhcCCcCCEEEccCC
Confidence 1125568999999999998877766 7789999999999985 344555889999999999998
Q ss_pred ccceEeCccccCCcccccccccccCCCc--ccccCcccceeeecCcccccccccCCCCcccCcccceeecccCccccCCC
Q 038751 787 RSVKRVGDEFLGMEISDHIHIHGTSSSS--SVIAFPKLQKLELTGMDELEEWDFGNDDITIMPHIKSLYITYCEKLKSLP 864 (915)
Q Consensus 787 ~~l~~~~~~~~~~~~l~~l~l~~~~~~~--~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~lp~L~~L~l~~c~~L~~lp 864 (915)
. +..++. +.....++.+++++|.... .+..+++|+.|++.++ .+..++. +..+++|+.|++++|+.....|
T Consensus 232 ~-l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n-~l~~~~~----~~~l~~L~~L~L~~n~l~~~~~ 304 (347)
T 4fmz_A 232 K-ITDLSP-LANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSN-QISDISV----LNNLSQLNSLFLNNNQLGNEDM 304 (347)
T ss_dssp C-CCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS-CCCCCGG----GGGCTTCSEEECCSSCCCGGGH
T ss_pred c-cCCCcc-hhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCC-ccCCChh----hcCCCCCCEEECcCCcCCCcCh
Confidence 7 666655 6677889999999986543 4668899999999987 4555532 5589999999999996544556
Q ss_pred cCCCCCCCcCeEeEcCCcchhHhhccCCCCCcccccCCCcceecccccc
Q 038751 865 ELLLRSTTLESLTIFGVPIVQESFKRRTEKDWSKISHIPNIKIQNIVFR 913 (915)
Q Consensus 865 ~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~ip~v~~~~~~~~ 913 (915)
..+..+++|++|++++|+.. . . ..+.....+..+.+.+|.+.
T Consensus 305 ~~l~~l~~L~~L~L~~n~l~-~-----~-~~~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 305 EVIGGLTNLTTLFLSQNHIT-D-----I-RPLASLSKMDSADFANQVIK 346 (347)
T ss_dssp HHHHTCTTCSEEECCSSSCC-C-----C-GGGGGCTTCSEESSSCC---
T ss_pred hHhhccccCCEEEccCCccc-c-----c-cChhhhhccceeehhhhccc
Confidence 77888999999999999752 1 0 11445566777777777664
No 26
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.77 E-value=1.7e-18 Score=199.35 Aligned_cols=288 Identities=19% Similarity=0.164 Sum_probs=183.7
Q ss_pred cceEEEEEEccccccC-ccccCCCCceeEEEeccCCCCceeccccc-hhccccCCcceeeecCCCCCccccccc-cCCCc
Q 038751 533 EKLRHLMLVLGFWAKF-PFSIFDAKTLHSLILVYSSNNQVAASPVL-QGLFDQLTCLRALKIEDLPPTIKIPKG-LENLI 609 (915)
Q Consensus 533 ~~~r~Lsl~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~lrv~~~~l-p~~i~~L~~Lr~L~l~~~~~~~~lP~~-i~~L~ 609 (915)
..++.|++++|.+... +..+..+++|++|.+.+|. +..+ |..|+++.+|++|+|+++... .+|.. +.++.
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~------i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~ 104 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENI------VSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLS 104 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSC------CCEECTTTTTTCTTCCEEECCSSCCC-SCCTTSSTTCT
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCc------cCEeChhhhhCCccCCEEECCCCcCC-ccCcccccCCC
Confidence 6788888888887764 4567888888888888773 4434 677888888888888888776 66654 68888
Q ss_pred CCCcccCcc------cCCcCCCCCCCCccCceeecccCCccCCCCcCCCCCcCccccccceeEcCccCCCChhhHhHhhc
Q 038751 610 HLRYLKLSM------VPNGIERLTSLRTLSEFAVARVGGKYSSKSCNLEGLRPLNHLRGFLQISGLGNVTDADEAKNAHL 683 (915)
Q Consensus 610 ~Lr~L~l~~------lP~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l 683 (915)
+|++|+++. .|..+.++++|++|++..+.... .....+.++.+|+ .|.+.+. .........+
T Consensus 105 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~-------~~~~~~~~l~~L~-~L~l~~n----~l~~~~~~~l 172 (477)
T 2id5_A 105 NLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVY-------ISHRAFSGLNSLE-QLTLEKC----NLTSIPTEAL 172 (477)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCE-------ECTTSSTTCTTCC-EEEEESC----CCSSCCHHHH
T ss_pred CCCEEECCCCccccCChhHccccccCCEEECCCCccce-------eChhhccCCCCCC-EEECCCC----cCcccChhHh
Confidence 888888543 24557778888888765443221 1112233333344 5555442 1112222345
Q ss_pred cCCCCCCceEEEEecCCCCchhhhhhhhhHHHHhhHHHHHhhcCCCCCcceEEEeeeCCC-CCCCcccCccCccEEEEcC
Q 038751 684 EKKKNLIDLILIFNEREESDDEKASEEMNEEKEAKHEAVCEALRPPPDIKSLEIMVFKGR-TPSNWIGSLNKLKMLTLNS 762 (915)
Q Consensus 684 ~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~p~~~~~l~~L~~L~L~~ 762 (915)
.++++|+.|+++.|.... .....+..+++|+.|++.+|... .+|.......+|++|+|++
T Consensus 173 ~~l~~L~~L~l~~n~i~~-------------------~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 233 (477)
T 2id5_A 173 SHLHGLIVLRLRHLNINA-------------------IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITH 233 (477)
T ss_dssp TTCTTCCEEEEESCCCCE-------------------ECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEES
T ss_pred cccCCCcEEeCCCCcCcE-------------------eChhhcccCcccceeeCCCCccccccCcccccCccccEEECcC
Confidence 667777777777664321 01124555677777777776532 2344444455777777777
Q ss_pred cCCCCCCC--CCCCCCCcceeeccccccceEeCccccCCcccccccccccCCCcccccCcccceeeecCcccccccccCC
Q 038751 763 FVKCEIMP--PLGKLPSLEILRIWHMRSVKRVGDEFLGMEISDHIHIHGTSSSSSVIAFPKLQKLELTGMDELEEWDFGN 840 (915)
Q Consensus 763 ~~~~~~l~--~l~~Lp~L~~L~L~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~ 840 (915)
|. +..+| .++.+++|++|+|++|. +..++... +..+++|+.|++.++. +..+. +
T Consensus 234 n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~-------------------~~~l~~L~~L~L~~n~-l~~~~--~ 289 (477)
T 2id5_A 234 CN-LTAVPYLAVRHLVYLRFLNLSYNP-ISTIEGSM-------------------LHELLRLQEIQLVGGQ-LAVVE--P 289 (477)
T ss_dssp SC-CCSCCHHHHTTCTTCCEEECCSSC-CCEECTTS-------------------CTTCTTCCEEECCSSC-CSEEC--T
T ss_pred Cc-ccccCHHHhcCccccCeeECCCCc-CCccChhh-------------------ccccccCCEEECCCCc-cceEC--H
Confidence 63 33444 25677777777777765 44444322 3467888888888763 43332 2
Q ss_pred CCcccCcccceeecccCccccCCCc-CCCCCCCcCeEeEcCCcc
Q 038751 841 DDITIMPHIKSLYITYCEKLKSLPE-LLLRSTTLESLTIFGVPI 883 (915)
Q Consensus 841 ~~~~~lp~L~~L~l~~c~~L~~lp~-~l~~l~~L~~L~l~~c~~ 883 (915)
..+..+++|+.|++++| .+..+|. .+..+++|++|+++++|-
T Consensus 290 ~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 290 YAFRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDSNPL 332 (477)
T ss_dssp TTBTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCSSCE
T ss_pred HHhcCcccCCEEECCCC-cCceeCHhHcCCCcccCEEEccCCCc
Confidence 33567889999999988 6777775 457788899999988763
No 27
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.77 E-value=6.3e-18 Score=198.60 Aligned_cols=341 Identities=15% Similarity=0.087 Sum_probs=219.6
Q ss_pred ceEEEEEEccccccCccccCCCCceeEEEeccCCCCceeccccch-hccccCCcceeeecCCCCCccccccccCCCcCCC
Q 038751 534 KLRHLMLVLGFWAKFPFSIFDAKTLHSLILVYSSNNQVAASPVLQ-GLFDQLTCLRALKIEDLPPTIKIPKGLENLIHLR 612 (915)
Q Consensus 534 ~~r~Lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~lrv~~~~lp-~~i~~L~~Lr~L~l~~~~~~~~lP~~i~~L~~Lr 612 (915)
..++++++++.++.+|..+. ++|++|++++|. +..+| ..|+++++|++|++++|......|..+.+|++|+
T Consensus 32 ~~~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~------i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 103 (562)
T 3a79_B 32 LESMVDYSNRNLTHVPKDLP--PRTKALSLSQNS------ISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLE 103 (562)
T ss_dssp -CCEEECTTSCCCSCCTTSC--TTCCEEECCSSC------CCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCC
T ss_pred CCcEEEcCCCCCccCCCCCC--CCcCEEECCCCC------ccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCC
Confidence 34889999998887776654 899999999984 55555 7899999999999999988844577899999999
Q ss_pred ccc-----CcccCCcCCCCCCCCccCceeecccCCccCCCCcCCCCCcCccccccceeEcCccCCCChhhHhHhhccCCC
Q 038751 613 YLK-----LSMVPNGIERLTSLRTLSEFAVARVGGKYSSKSCNLEGLRPLNHLRGFLQISGLGNVTDADEAKNAHLEKKK 687 (915)
Q Consensus 613 ~L~-----l~~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~l~ 687 (915)
+|+ ++.+|.. .+++|++|++..+..... .....+.++++|+ .|.+.+-. +. . ..+..+.
T Consensus 104 ~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l------~~p~~~~~l~~L~-~L~L~~n~-l~---~---~~~~~l~ 167 (562)
T 3a79_B 104 YLDVSHNRLQNISCC--PMASLRHLDLSFNDFDVL------PVCKEFGNLTKLT-FLGLSAAK-FR---Q---LDLLPVA 167 (562)
T ss_dssp EEECTTSCCCEECSC--CCTTCSEEECCSSCCSBC------CCCGGGGGCTTCC-EEEEECSB-CC---T---TTTGGGT
T ss_pred EEECCCCcCCccCcc--ccccCCEEECCCCCcccc------CchHhhcccCccc-EEecCCCc-cc---c---Cchhhhh
Confidence 999 4567876 899999998876654321 1112344455555 67666521 11 1 2244445
Q ss_pred CC--CceEEEEecC--CCCchhh--h-----------------------------------------hhhhhH-------
Q 038751 688 NL--IDLILIFNER--EESDDEK--A-----------------------------------------SEEMNE------- 713 (915)
Q Consensus 688 ~L--~~L~L~~~~~--~~~~~~~--~-----------------------------------------~~~~~~------- 713 (915)
+| +.|+++.|.. ....... . ......
T Consensus 168 ~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~ 247 (562)
T 3a79_B 168 HLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTR 247 (562)
T ss_dssp TSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHS
T ss_pred hceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhc
Confidence 55 9999988754 1100000 0 000000
Q ss_pred -------------HHHhhHHHHHhhcCCCCCcceEEEeeeCCC-CCCCcc------------------------------
Q 038751 714 -------------EKEAKHEAVCEALRPPPDIKSLEIMVFKGR-TPSNWI------------------------------ 749 (915)
Q Consensus 714 -------------~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~p~~~------------------------------ 749 (915)
.........+..+. .++|+.|++.+|... .+|.++
T Consensus 248 l~~L~~L~L~~~~l~~~~~~~~~~~~~-~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~ 326 (562)
T 3a79_B 248 GPTLLNVTLQHIETTWKCSVKLFQFFW-PRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYS 326 (562)
T ss_dssp CSSCEEEEEEEEEECHHHHHHHHHHHT-TSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHH
T ss_pred cCcceEEEecCCcCcHHHHHHHHHhhh-cccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhh
Confidence 00000011111111 237788888777654 455544
Q ss_pred -----------------------cCccCccEEEEcCcCCCCCC-CCCCCCCCcceeeccccccceEeC---ccccCCccc
Q 038751 750 -----------------------GSLNKLKMLTLNSFVKCEIM-PPLGKLPSLEILRIWHMRSVKRVG---DEFLGMEIS 802 (915)
Q Consensus 750 -----------------------~~l~~L~~L~L~~~~~~~~l-~~l~~Lp~L~~L~L~~~~~l~~~~---~~~~~~~~l 802 (915)
..+++|++|++++|...+.+ ..++.+++|++|++++|. ++.++ ..+.....+
T Consensus 327 ~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~l~~L 405 (562)
T 3a79_B 327 VFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG-LKNFFKVALMTKNMSSL 405 (562)
T ss_dssp HHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSC-CCBTTHHHHTTTTCTTC
T ss_pred hhccCcceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCC-cCCcccchhhhcCCCCC
Confidence 45677888888777654433 346788888888888875 55443 345566778
Q ss_pred ccccccccCCCc-----ccccCcccceeeecCcccccccccCCCCcccC-cccceeecccCccccCCCcCCCCCCCcCeE
Q 038751 803 DHIHIHGTSSSS-----SVIAFPKLQKLELTGMDELEEWDFGNDDITIM-PHIKSLYITYCEKLKSLPELLLRSTTLESL 876 (915)
Q Consensus 803 ~~l~l~~~~~~~-----~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~l-p~L~~L~l~~c~~L~~lp~~l~~l~~L~~L 876 (915)
+.+++++|.... ....+++|+.|+++++. +..... ..+ ++|+.|++++| ++..+|..+..+++|++|
T Consensus 406 ~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~-----~~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L 478 (562)
T 3a79_B 406 ETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNM-LTGSVF-----RCLPPKVKVLDLHNN-RIMSIPKDVTHLQALQEL 478 (562)
T ss_dssp CEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSC-CCGGGG-----SSCCTTCSEEECCSS-CCCCCCTTTTSSCCCSEE
T ss_pred CEEECCCCcCCCccChhhhcCcccCCEEECCCCC-CCcchh-----hhhcCcCCEEECCCC-cCcccChhhcCCCCCCEE
Confidence 888888876543 24456888888888764 322211 134 69999999999 788999988899999999
Q ss_pred eEcCCcchhHhhccCCCC-CcccccCCCcceecccccc
Q 038751 877 TIFGVPIVQESFKRRTEK-DWSKISHIPNIKIQNIVFR 913 (915)
Q Consensus 877 ~l~~c~~l~~~~~~~~~~-~~~~i~~ip~v~~~~~~~~ 913 (915)
++++|..- . ..+ .+....++..+.+.+|.+.
T Consensus 479 ~L~~N~l~-~-----l~~~~~~~l~~L~~L~l~~N~~~ 510 (562)
T 3a79_B 479 NVASNQLK-S-----VPDGVFDRLTSLQYIWLHDNPWD 510 (562)
T ss_dssp ECCSSCCC-C-----CCTTSTTTCTTCCCEECCSCCBC
T ss_pred ECCCCCCC-C-----CCHHHHhcCCCCCEEEecCCCcC
Confidence 99998542 1 111 2444556666777776553
No 28
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.76 E-value=2.4e-18 Score=186.96 Aligned_cols=230 Identities=20% Similarity=0.215 Sum_probs=143.5
Q ss_pred cceEEEEEEccccccCccccCCCCceeEEEeccCCCCceeccccchhccccCCcceeeecCCCCCccccccccCCCcCCC
Q 038751 533 EKLRHLMLVLGFWAKFPFSIFDAKTLHSLILVYSSNNQVAASPVLQGLFDQLTCLRALKIEDLPPTIKIPKGLENLIHLR 612 (915)
Q Consensus 533 ~~~r~Lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~lrv~~~~lp~~i~~L~~Lr~L~l~~~~~~~~lP~~i~~L~~Lr 612 (915)
..++.|++.++.+..+|..+..+++|++|.+.+| .+..+|..++++.+|++|++++|... .+|..+++|++|+
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n------~l~~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~ 153 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAA------GLMELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLR 153 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESS------CCCCCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCC
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCC------CccchhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCC
Confidence 4567777777776666666666777777777666 34456666777777777777666655 5555555555555
Q ss_pred cccCcccCCcCCCCCCCCccCceeecccCCccCCCCcCCCCCcCccccccceeEcCccCCCChhhHhHhhccCCCCCCce
Q 038751 613 YLKLSMVPNGIERLTSLRTLSEFAVARVGGKYSSKSCNLEGLRPLNHLRGFLQISGLGNVTDADEAKNAHLEKKKNLIDL 692 (915)
Q Consensus 613 ~L~l~~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L 692 (915)
+|+++ .+.... .....+... .+ ...+.++
T Consensus 154 ~L~L~------------------~n~~~~-------~~p~~~~~~-------~~-------------~~~~~~l------ 182 (328)
T 4fcg_A 154 ELSIR------------------ACPELT-------ELPEPLAST-------DA-------------SGEHQGL------ 182 (328)
T ss_dssp EEEEE------------------EETTCC-------CCCSCSEEE-------C--------------CCCEEES------
T ss_pred EEECC------------------CCCCcc-------ccChhHhhc-------cc-------------hhhhccC------
Confidence 55433 222111 000000000 00 0012233
Q ss_pred EEEEecCCCCchhhhhhhhhHHHHhhHHHHHhhcCCCCCcceEEEeeeCCCCCCCcccCccCccEEEEcCcCCCCCCCCC
Q 038751 693 ILIFNEREESDDEKASEEMNEEKEAKHEAVCEALRPPPDIKSLEIMVFKGRTPSNWIGSLNKLKMLTLNSFVKCEIMPPL 772 (915)
Q Consensus 693 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l 772 (915)
++|+.|++++|....+|.+++.+++|++|+|++|......+.+
T Consensus 183 -------------------------------------~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l 225 (328)
T 4fcg_A 183 -------------------------------------VNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAI 225 (328)
T ss_dssp -------------------------------------TTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGG
T ss_pred -------------------------------------CCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhh
Confidence 4455555555555566666777777777777777544433446
Q ss_pred CCCCCcceeeccccccceEeCccccCCcccccccccccCCCcccccCcccceeeecCcccccccccCCCCcccCccccee
Q 038751 773 GKLPSLEILRIWHMRSVKRVGDEFLGMEISDHIHIHGTSSSSSVIAFPKLQKLELTGMDELEEWDFGNDDITIMPHIKSL 852 (915)
Q Consensus 773 ~~Lp~L~~L~L~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~lp~L~~L 852 (915)
+.+++|++|++++|.....+|.. +..+++|+.|++.+|.....++. .+..+++|+.|
T Consensus 226 ~~l~~L~~L~Ls~n~~~~~~p~~--------------------~~~l~~L~~L~L~~n~~~~~~p~---~~~~l~~L~~L 282 (328)
T 4fcg_A 226 HHLPKLEELDLRGCTALRNYPPI--------------------FGGRAPLKRLILKDCSNLLTLPL---DIHRLTQLEKL 282 (328)
T ss_dssp GGCTTCCEEECTTCTTCCBCCCC--------------------TTCCCCCCEEECTTCTTCCBCCT---TGGGCTTCCEE
T ss_pred ccCCCCCEEECcCCcchhhhHHH--------------------hcCCCCCCEEECCCCCchhhcch---hhhcCCCCCEE
Confidence 77777777777777655544432 23677788888877765555542 25688999999
Q ss_pred ecccCccccCCCcCCCCCCCcCeEeEcC
Q 038751 853 YITYCEKLKSLPELLLRSTTLESLTIFG 880 (915)
Q Consensus 853 ~l~~c~~L~~lp~~l~~l~~L~~L~l~~ 880 (915)
++++|+.++.+|..+.++++|+.+.+..
T Consensus 283 ~L~~n~~~~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 283 DLRGCVNLSRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp ECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred eCCCCCchhhccHHHhhccCceEEeCCH
Confidence 9999999999999999999999998874
No 29
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.75 E-value=6.5e-18 Score=199.22 Aligned_cols=97 Identities=21% Similarity=0.241 Sum_probs=53.0
Q ss_pred cceEEEEEEccccccC-ccccCCCCceeEEEeccCCCCceeccccc-hhccccCCcceeeecCCCCCccccccccCCCcC
Q 038751 533 EKLRHLMLVLGFWAKF-PFSIFDAKTLHSLILVYSSNNQVAASPVL-QGLFDQLTCLRALKIEDLPPTIKIPKGLENLIH 610 (915)
Q Consensus 533 ~~~r~Lsl~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~lrv~~~~l-p~~i~~L~~Lr~L~l~~~~~~~~lP~~i~~L~~ 610 (915)
..+++|+++++.+... +..+..+++|++|++.+|. +..+ |..|+++.+|++|+++++......|..++++.+
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~------i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 101 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE------IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 101 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCC------CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTT
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCc------CCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccc
Confidence 5677888887776653 3466777788888877763 2223 244555555555555555544222244555555
Q ss_pred CCcccCc-----ccCC-cCCCCCCCCccCce
Q 038751 611 LRYLKLS-----MVPN-GIERLTSLRTLSEF 635 (915)
Q Consensus 611 Lr~L~l~-----~lP~-~i~~L~~L~~L~~~ 635 (915)
|++|+++ .+|. .++++++|++|++.
T Consensus 102 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~ 132 (570)
T 2z63_A 102 LQKLVAVETNLASLENFPIGHLKTLKELNVA 132 (570)
T ss_dssp CCEEECTTSCCCCSTTCSCTTCTTCCEEECC
T ss_pred cccccccccccccCCCccccccccccEEecC
Confidence 5555522 2222 24444555554443
No 30
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.75 E-value=5e-18 Score=199.17 Aligned_cols=148 Identities=18% Similarity=0.226 Sum_probs=107.3
Q ss_pred cCCCCCcceEEEeeeCCCCCC---CcccCccCccEEEEcCcCCCCCCC-CCCCCCCcceeeccccccceEeCccccCCcc
Q 038751 726 LRPPPDIKSLEIMVFKGRTPS---NWIGSLNKLKMLTLNSFVKCEIMP-PLGKLPSLEILRIWHMRSVKRVGDEFLGMEI 801 (915)
Q Consensus 726 l~~~~~L~~L~l~~~~~~~~p---~~~~~l~~L~~L~L~~~~~~~~l~-~l~~Lp~L~~L~L~~~~~l~~~~~~~~~~~~ 801 (915)
+..+++|+.|++++|....+| ..+..+++|++|+|++|... .+| .++.+++|++|++++|. ++.++..+. ..
T Consensus 357 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~-l~~l~~~~~--~~ 432 (549)
T 2z81_A 357 KGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTG-IRVVKTCIP--QT 432 (549)
T ss_dssp TTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSC-CSCCCTTSC--TT
T ss_pred hhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCC-cccccchhc--CC
Confidence 456677888888877766554 24567788888888887433 444 36777888888888876 555554332 46
Q ss_pred cccccccccCCCcccccCcccceeeecCcccccccccCCCCcccCcccceeecccCccccCCC-cCCCCCCCcCeEeEcC
Q 038751 802 SDHIHIHGTSSSSSVIAFPKLQKLELTGMDELEEWDFGNDDITIMPHIKSLYITYCEKLKSLP-ELLLRSTTLESLTIFG 880 (915)
Q Consensus 802 l~~l~l~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~lp~L~~L~l~~c~~L~~lp-~~l~~l~~L~~L~l~~ 880 (915)
++.|++++|.+......+++|++|+++++ .+..++. ...+++|+.|++++| .+..+| ..+..+++|+.|++++
T Consensus 433 L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N-~l~~ip~----~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~ 506 (549)
T 2z81_A 433 LEVLDVSNNNLDSFSLFLPRLQELYISRN-KLKTLPD----ASLFPVLLVMKISRN-QLKSVPDGIFDRLTSLQKIWLHT 506 (549)
T ss_dssp CSEEECCSSCCSCCCCCCTTCCEEECCSS-CCSSCCC----GGGCTTCCEEECCSS-CCCCCCTTGGGGCTTCCEEECCS
T ss_pred ceEEECCCCChhhhcccCChhcEEECCCC-ccCcCCC----cccCccCCEEecCCC-ccCCcCHHHHhcCcccCEEEecC
Confidence 78888888877766678889999999887 4554432 246899999999988 566665 4578899999999988
Q ss_pred Ccc
Q 038751 881 VPI 883 (915)
Q Consensus 881 c~~ 883 (915)
||-
T Consensus 507 N~~ 509 (549)
T 2z81_A 507 NPW 509 (549)
T ss_dssp SCB
T ss_pred CCc
Confidence 763
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.75 E-value=1.6e-17 Score=188.81 Aligned_cols=289 Identities=17% Similarity=0.117 Sum_probs=201.8
Q ss_pred cceEEEEEEccccccCccccCCCCceeEEEeccCCCCceeccccchhccccCCcceeeecCCCCCccccccccCCCcCCC
Q 038751 533 EKLRHLMLVLGFWAKFPFSIFDAKTLHSLILVYSSNNQVAASPVLQGLFDQLTCLRALKIEDLPPTIKIPKGLENLIHLR 612 (915)
Q Consensus 533 ~~~r~Lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~lrv~~~~lp~~i~~L~~Lr~L~l~~~~~~~~lP~~i~~L~~Lr 612 (915)
..+++|+++++.+...| .+..+++|++|.+.+| .+..+| ++.+++|++|++++|... .+| ++++++|+
T Consensus 42 ~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n------~l~~~~--~~~l~~L~~L~Ls~N~l~-~~~--~~~l~~L~ 109 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSN------NITTLD--LSQNTNLTYLACDSNKLT-NLD--VTPLTKLT 109 (457)
T ss_dssp TTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSS------CCSCCC--CTTCTTCSEEECCSSCCS-CCC--CTTCTTCC
T ss_pred CCCCEEEccCCCcccCh-hhcccCCCCEEEccCC------cCCeEc--cccCCCCCEEECcCCCCc-eee--cCCCCcCC
Confidence 67889999988887665 6888899999999888 455565 889999999999988876 565 88899999
Q ss_pred cccC-----cccCCcCCCCCCCCccCceeecccCCccCCCCcCCCCCcCccccccceeEcCccCCCChhhHhHhhccCCC
Q 038751 613 YLKL-----SMVPNGIERLTSLRTLSEFAVARVGGKYSSKSCNLEGLRPLNHLRGFLQISGLGNVTDADEAKNAHLEKKK 687 (915)
Q Consensus 613 ~L~l-----~~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~l~ 687 (915)
+|++ +.+| ++++++|++|++..+.... .. +.+++.|+ .|.+.....+... .+..++
T Consensus 110 ~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~-------l~---l~~l~~L~-~L~l~~n~~~~~~------~~~~l~ 170 (457)
T 3bz5_A 110 YLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTE-------ID---VSHNTQLT-ELDCHLNKKITKL------DVTPQT 170 (457)
T ss_dssp EEECCSSCCSCCC--CTTCTTCCEEECTTSCCSC-------CC---CTTCTTCC-EEECTTCSCCCCC------CCTTCT
T ss_pred EEECCCCcCCeec--CCCCCcCCEEECCCCccce-------ec---cccCCcCC-EEECCCCCccccc------ccccCC
Confidence 9984 4454 7788888888766543322 12 33444444 5666543222221 366778
Q ss_pred CCCceEEEEecCCCCchhhhhhhhhHHHHhhHHHHHhhcCCCCCcceEEEeeeCCCCCCCcccCccCccEEEEcCcCCCC
Q 038751 688 NLIDLILIFNEREESDDEKASEEMNEEKEAKHEAVCEALRPPPDIKSLEIMVFKGRTPSNWIGSLNKLKMLTLNSFVKCE 767 (915)
Q Consensus 688 ~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~ 767 (915)
+|+.|++++|.... + .+..+++|+.|++.+|....++ ++.+++|+.|++++|...
T Consensus 171 ~L~~L~ls~n~l~~---------------------l-~l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~- 225 (457)
T 3bz5_A 171 QLTTLDCSFNKITE---------------------L-DVSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLT- 225 (457)
T ss_dssp TCCEEECCSSCCCC---------------------C-CCTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCS-
T ss_pred cCCEEECCCCccce---------------------e-ccccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCccc-
Confidence 89999988875331 1 1566788889998888877764 678888999999888543
Q ss_pred CCCCCCCCCCcceeeccccccceEeCcccc-C-------CcccccccccccCCCc--ccccCcccceeeecCcccccccc
Q 038751 768 IMPPLGKLPSLEILRIWHMRSVKRVGDEFL-G-------MEISDHIHIHGTSSSS--SVIAFPKLQKLELTGMDELEEWD 837 (915)
Q Consensus 768 ~l~~l~~Lp~L~~L~L~~~~~l~~~~~~~~-~-------~~~l~~l~l~~~~~~~--~~~~f~~L~~L~l~~~~~l~~~~ 837 (915)
.+| ++.+++|++|++++|. ++.++.... . ...++.+++++|.... ....+++|+.|+++++..+..++
T Consensus 226 ~ip-~~~l~~L~~L~l~~N~-l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~ 303 (457)
T 3bz5_A 226 EID-VTPLTQLTYFDCSVNP-LTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLD 303 (457)
T ss_dssp CCC-CTTCTTCSEEECCSSC-CSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEE
T ss_pred ccC-ccccCCCCEEEeeCCc-CCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceec
Confidence 365 7888889999988876 554442211 1 1134556666664332 24567999999999987665554
Q ss_pred cCC-----CCcccCcccceeecccCccccCCCcCCCCCCCcCeEeEcCCc
Q 038751 838 FGN-----DDITIMPHIKSLYITYCEKLKSLPELLLRSTTLESLTIFGVP 882 (915)
Q Consensus 838 ~~~-----~~~~~lp~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~c~ 882 (915)
... -++..+++|+.|++++| ++..+| +.++++|+.|+++++.
T Consensus 304 ~~~~~L~~L~l~~~~~L~~L~L~~N-~l~~l~--l~~l~~L~~L~l~~N~ 350 (457)
T 3bz5_A 304 CQAAGITELDLSQNPKLVYLYLNNT-ELTELD--VSHNTKLKSLSCVNAH 350 (457)
T ss_dssp CTTCCCSCCCCTTCTTCCEEECTTC-CCSCCC--CTTCTTCSEEECCSSC
T ss_pred cCCCcceEechhhcccCCEEECCCC-cccccc--cccCCcCcEEECCCCC
Confidence 211 12446788888888877 577775 7889999999998874
No 32
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.75 E-value=1.3e-17 Score=205.29 Aligned_cols=152 Identities=20% Similarity=0.143 Sum_probs=107.9
Q ss_pred cccceEEEEEEcccccc-CccccCCCCceeEEEeccCCCCceeccccc-hhccccCCcceeeecCCCCCccccccccCCC
Q 038751 531 CQEKLRHLMLVLGFWAK-FPFSIFDAKTLHSLILVYSSNNQVAASPVL-QGLFDQLTCLRALKIEDLPPTIKIPKGLENL 608 (915)
Q Consensus 531 ~~~~~r~Lsl~~~~~~~-~~~~~~~~~~Lr~L~l~~~~~~lrv~~~~l-p~~i~~L~~Lr~L~l~~~~~~~~lP~~i~~L 608 (915)
....+++|++++|.+.. .+..+.++++|++|++.+|. .+..+ |..|+++++|++|+|++|......|..+++|
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~-----~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l 96 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQY-----TPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGL 96 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTC-----CCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSC
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCC-----CccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCC
Confidence 34789999999998876 46789999999999999985 34455 7889999999999999999885668999999
Q ss_pred cCCCcccCcc------cCCc--CCCCCCCCccCceeecccCCccCCCCcCCCCCcCccccccceeEcCccCCCChhhHhH
Q 038751 609 IHLRYLKLSM------VPNG--IERLTSLRTLSEFAVARVGGKYSSKSCNLEGLRPLNHLRGFLQISGLGNVTDADEAKN 680 (915)
Q Consensus 609 ~~Lr~L~l~~------lP~~--i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~ 680 (915)
.+|++|+++. +|.. +++|++|++|++..+..... .....+.+|++|+ .|.+.+.. ......
T Consensus 97 ~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~------~~~~~~~~L~~L~-~L~Ls~N~----i~~~~~ 165 (844)
T 3j0a_A 97 FHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSL------YLHPSFGKLNSLK-SIDFSSNQ----IFLVCE 165 (844)
T ss_dssp SSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCC------CCCGGGGTCSSCC-EEEEESSC----CCCCCS
T ss_pred cccCEeeCcCCCCCcccccCccccccCCCCEEECCCCccccc------ccchhHhhCCCCC-EEECCCCc----CCeeCH
Confidence 9999999543 3544 88999999998876654331 1112344555555 66665521 111111
Q ss_pred hhccCC--CCCCceEEEEec
Q 038751 681 AHLEKK--KNLIDLILIFNE 698 (915)
Q Consensus 681 ~~l~~l--~~L~~L~L~~~~ 698 (915)
..+..+ ++|+.|+++.|.
T Consensus 166 ~~l~~l~~~~L~~L~L~~n~ 185 (844)
T 3j0a_A 166 HELEPLQGKTLSFFSLAANS 185 (844)
T ss_dssp GGGHHHHHCSSCCCEECCSB
T ss_pred HHcccccCCccceEECCCCc
Confidence 223333 567777777664
No 33
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.73 E-value=1.9e-18 Score=203.92 Aligned_cols=151 Identities=20% Similarity=0.228 Sum_probs=102.3
Q ss_pred CCCCcceEEEeeeCCCCCCCcccCccCccEEEEcCcCCCCCCC--CCCCCCCcceeeccccccceEeCccccCCcccccc
Q 038751 728 PPPDIKSLEIMVFKGRTPSNWIGSLNKLKMLTLNSFVKCEIMP--PLGKLPSLEILRIWHMRSVKRVGDEFLGMEISDHI 805 (915)
Q Consensus 728 ~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~--~l~~Lp~L~~L~L~~~~~l~~~~~~~~~~~~l~~l 805 (915)
.+++|+.|++++|....+|..+..+++|++|++++|......+ .++.+++|++|++++|......+..+.....++.|
T Consensus 371 ~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 450 (570)
T 2z63_A 371 GTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 450 (570)
T ss_dssp TCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEE
T ss_pred ccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEE
Confidence 4556666666666555555446677777777777775443333 46778888888888876444445556667778888
Q ss_pred cccccCCC-----cccccCcccceeeecCcccccccccCCCCcccCcccceeecccCccccCCC-cCCCCCCCcCeEeEc
Q 038751 806 HIHGTSSS-----SSVIAFPKLQKLELTGMDELEEWDFGNDDITIMPHIKSLYITYCEKLKSLP-ELLLRSTTLESLTIF 879 (915)
Q Consensus 806 ~l~~~~~~-----~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~lp~L~~L~l~~c~~L~~lp-~~l~~l~~L~~L~l~ 879 (915)
++++|... ..+..+++|+.|++.++. +..+. +..+..+++|+.|++++| ++..+| ..+.++++|+.|+++
T Consensus 451 ~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~-l~~~~--~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~ 526 (570)
T 2z63_A 451 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLS--PTAFNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLH 526 (570)
T ss_dssp ECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEEC--TTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECC
T ss_pred ECcCCcCccccchhhhhcccCCCEEECCCCc-cccCC--hhhhhcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEec
Confidence 88887543 455678888888888763 33332 223557888888888888 566665 457788888888888
Q ss_pred CCc
Q 038751 880 GVP 882 (915)
Q Consensus 880 ~c~ 882 (915)
+||
T Consensus 527 ~N~ 529 (570)
T 2z63_A 527 TNP 529 (570)
T ss_dssp SSC
T ss_pred CCc
Confidence 865
No 34
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.72 E-value=3.2e-17 Score=197.52 Aligned_cols=151 Identities=18% Similarity=0.162 Sum_probs=102.0
Q ss_pred cceEEEEEEccccccCcc-ccCCCCceeEEEeccCCCCceeccccchhccccCCcceeeecCCCCCcccccc-ccCCCcC
Q 038751 533 EKLRHLMLVLGFWAKFPF-SIFDAKTLHSLILVYSSNNQVAASPVLQGLFDQLTCLRALKIEDLPPTIKIPK-GLENLIH 610 (915)
Q Consensus 533 ~~~r~Lsl~~~~~~~~~~-~~~~~~~Lr~L~l~~~~~~lrv~~~~lp~~i~~L~~Lr~L~l~~~~~~~~lP~-~i~~L~~ 610 (915)
..+++|+++++.+...+. .+.++++|++|.+.++. .....|..|+++++|++|+++++... .+|. .++++++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-----l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~ 98 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT-----ISKLEPELCQKLPMLKVLNLQHNELS-QLSDKTFAFCTN 98 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSC-----CCCCCTTHHHHCTTCCEEECCSSCCC-CCCTTTTTTCTT
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCc-----cCccCHHHHhcccCcCEEECCCCccC-ccChhhhccCCC
Confidence 789999999998877554 58899999999999884 22334778899999999999998877 7776 5899999
Q ss_pred CCcccCc-----ccC-CcCCCCCCCCccCceeecccCCccCCCCcCCCCCcCccccccceeEcCccCCCChhhHhHhhcc
Q 038751 611 LRYLKLS-----MVP-NGIERLTSLRTLSEFAVARVGGKYSSKSCNLEGLRPLNHLRGFLQISGLGNVTDADEAKNAHLE 684 (915)
Q Consensus 611 Lr~L~l~-----~lP-~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~ 684 (915)
|++|+++ .+| ..++++++|++|++..+.... .....+.++++|+ .|.+.+.. +...... .....
T Consensus 99 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-------~~~~~~~~l~~L~-~L~L~~n~-l~~~~~~-~~~~~ 168 (680)
T 1ziw_A 99 LTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS-------TKLGTQVQLENLQ-ELLLSNNK-IQALKSE-ELDIF 168 (680)
T ss_dssp CSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSC-------CCCCSSSCCTTCC-EEECCSSC-CCCBCHH-HHGGG
T ss_pred CCEEECCCCccCccChhHccccCCCCEEECCCCcccc-------cCchhhcccccCC-EEEccCCc-ccccCHH-Hhhcc
Confidence 9999854 455 458899999999877654332 1222333444444 56555421 1111110 11122
Q ss_pred CCCCCCceEEEEecC
Q 038751 685 KKKNLIDLILIFNER 699 (915)
Q Consensus 685 ~l~~L~~L~L~~~~~ 699 (915)
.+++|+.|++++|..
T Consensus 169 ~~~~L~~L~L~~n~l 183 (680)
T 1ziw_A 169 ANSSLKKLELSSNQI 183 (680)
T ss_dssp TTCEESEEECTTCCC
T ss_pred ccccccEEECCCCcc
Confidence 446778888776643
No 35
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.71 E-value=5.8e-17 Score=186.43 Aligned_cols=310 Identities=17% Similarity=0.145 Sum_probs=177.4
Q ss_pred EEEEEEccccccCccccCCCCceeEEEeccCCCCceeccccc-hhccccCCcceeeecCCCCCccccccccCCCcCCCcc
Q 038751 536 RHLMLVLGFWAKFPFSIFDAKTLHSLILVYSSNNQVAASPVL-QGLFDQLTCLRALKIEDLPPTIKIPKGLENLIHLRYL 614 (915)
Q Consensus 536 r~Lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~lrv~~~~l-p~~i~~L~~Lr~L~l~~~~~~~~lP~~i~~L~~Lr~L 614 (915)
+.+..++..+..+|..+. ++++.|++.++. +..+ |..|+++++|++|+|+++......|..+.+|++|++|
T Consensus 14 ~~v~c~~~~l~~ip~~~~--~~l~~L~L~~n~------l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 85 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGIP--TETRLLDLGKNR------IKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTL 85 (477)
T ss_dssp TEEECCSCCCSSCCSCCC--TTCSEEECCSSC------CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CEEEeCCCCcCcCCCCCC--CCCcEEECCCCc------cceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEE
Confidence 445555666665666543 689999999884 5555 5789999999999999998875558889999999999
Q ss_pred cC-----cccCCc-CCCCCCCCccCceeecccCCccCCCCcCCCCCcCccccccceeEcCccCCCChhhHhHhhccCCCC
Q 038751 615 KL-----SMVPNG-IERLTSLRTLSEFAVARVGGKYSSKSCNLEGLRPLNHLRGFLQISGLGNVTDADEAKNAHLEKKKN 688 (915)
Q Consensus 615 ~l-----~~lP~~-i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~l~~ 688 (915)
++ +.+|.+ +.++++|++|++..+..... ....+.. +++|+ .|.+.+- .........+.++++
T Consensus 86 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~----~~~~~~~---l~~L~-~L~l~~n----~l~~~~~~~~~~l~~ 153 (477)
T 2id5_A 86 GLRSNRLKLIPLGVFTGLSNLTKLDISENKIVIL----LDYMFQD---LYNLK-SLEVGDN----DLVYISHRAFSGLNS 153 (477)
T ss_dssp ECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEE----CTTTTTT---CTTCC-EEEECCT----TCCEECTTSSTTCTT
T ss_pred ECCCCcCCccCcccccCCCCCCEEECCCCccccC----ChhHccc---cccCC-EEECCCC----ccceeChhhccCCCC
Confidence 85 456654 57788888887654332210 0112222 22222 3444321 111111223444555
Q ss_pred CCceEEEEecCCCCchhhhhhhhhHHHHhhHHHHHhhcCCCCCcceEEEeeeCCCCCC-CcccCccCccEEEEcCcCCCC
Q 038751 689 LIDLILIFNEREESDDEKASEEMNEEKEAKHEAVCEALRPPPDIKSLEIMVFKGRTPS-NWIGSLNKLKMLTLNSFVKCE 767 (915)
Q Consensus 689 L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p-~~~~~l~~L~~L~L~~~~~~~ 767 (915)
|+.|+++.|.... . ....+..+++|+.|++.+|....++ ..+..+++|++|++++|...+
T Consensus 154 L~~L~l~~n~l~~----------------~---~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~ 214 (477)
T 2id5_A 154 LEQLTLEKCNLTS----------------I---PTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLD 214 (477)
T ss_dssp CCEEEEESCCCSS----------------C---CHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCC
T ss_pred CCEEECCCCcCcc----------------c---ChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCcccc
Confidence 5555555543211 0 0112333455555555555443332 234445555555555544333
Q ss_pred CCCC-CCCCCCcceeeccccccceEeCccccCCcccccccccccCCCcccccCcccceeeecCcccccccccCCCCcccC
Q 038751 768 IMPP-LGKLPSLEILRIWHMRSVKRVGDEFLGMEISDHIHIHGTSSSSSVIAFPKLQKLELTGMDELEEWDFGNDDITIM 846 (915)
Q Consensus 768 ~l~~-l~~Lp~L~~L~L~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~l 846 (915)
.+|. ....++|++|++++|. ++.++.. .+..+++|+.|+++++. +..+. ...+..+
T Consensus 215 ~~~~~~~~~~~L~~L~l~~n~-l~~~~~~-------------------~~~~l~~L~~L~Ls~n~-l~~~~--~~~~~~l 271 (477)
T 2id5_A 215 TMTPNCLYGLNLTSLSITHCN-LTAVPYL-------------------AVRHLVYLRFLNLSYNP-ISTIE--GSMLHEL 271 (477)
T ss_dssp EECTTTTTTCCCSEEEEESSC-CCSCCHH-------------------HHTTCTTCCEEECCSSC-CCEEC--TTSCTTC
T ss_pred ccCcccccCccccEEECcCCc-ccccCHH-------------------HhcCccccCeeECCCCc-CCccC--hhhcccc
Confidence 3322 2233355555555443 3322211 13478999999999874 44443 2335689
Q ss_pred cccceeecccCccccCCCcCCCCCCCcCeEeEcCCcchhHhhccCCCCCcccccCCCcceeccccc
Q 038751 847 PHIKSLYITYCEKLKSLPELLLRSTTLESLTIFGVPIVQESFKRRTEKDWSKISHIPNIKIQNIVF 912 (915)
Q Consensus 847 p~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~ip~v~~~~~~~ 912 (915)
++|+.|++.+|..-...|..+..+++|++|++++|..- . .....+.....+..+.+.+|.+
T Consensus 272 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~----~~~~~~~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 272 LRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT-T----LEESVFHSVGNLETLILDSNPL 332 (477)
T ss_dssp TTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCS-C----CCGGGBSCGGGCCEEECCSSCE
T ss_pred ccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCc-e----eCHhHcCCCcccCEEEccCCCc
Confidence 99999999999543344778889999999999998431 1 1111223344555566665544
No 36
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.71 E-value=1.9e-16 Score=179.89 Aligned_cols=272 Identities=16% Similarity=0.126 Sum_probs=188.9
Q ss_pred ccceEEEEEEccccccCccccCCCCceeEEEeccCCCCceeccccchhccccCCcceeeecCCCCCccccccccCCCcCC
Q 038751 532 QEKLRHLMLVLGFWAKFPFSIFDAKTLHSLILVYSSNNQVAASPVLQGLFDQLTCLRALKIEDLPPTIKIPKGLENLIHL 611 (915)
Q Consensus 532 ~~~~r~Lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~lrv~~~~lp~~i~~L~~Lr~L~l~~~~~~~~lP~~i~~L~~L 611 (915)
...+++|++++|.+...+ +..+++|++|.+.+| .+..+| ++++++|++|++++|... .+| ++++++|
T Consensus 63 l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N------~l~~~~--~~~l~~L~~L~L~~N~l~-~l~--~~~l~~L 129 (457)
T 3bz5_A 63 LTGLTKLICTSNNITTLD--LSQNTNLTYLACDSN------KLTNLD--VTPLTKLTYLNCDTNKLT-KLD--VSQNPLL 129 (457)
T ss_dssp CTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSS------CCSCCC--CTTCTTCCEEECCSSCCS-CCC--CTTCTTC
T ss_pred cCCCCEEEccCCcCCeEc--cccCCCCCEEECcCC------CCceee--cCCCCcCCEEECCCCcCC-eec--CCCCCcC
Confidence 378999999999988654 889999999999998 455565 899999999999999887 566 8999999
Q ss_pred CcccCc-----ccCCcCCCCCCCCccCceeecccCCccCCCCcCCCCCcCccccccceeEcCccCCCChhhHhHhhccCC
Q 038751 612 RYLKLS-----MVPNGIERLTSLRTLSEFAVARVGGKYSSKSCNLEGLRPLNHLRGFLQISGLGNVTDADEAKNAHLEKK 686 (915)
Q Consensus 612 r~L~l~-----~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~l 686 (915)
++|+++ .+| ++++++|++|++..+.... ... +..+++|+ .|.+.+.. +.. . .+..+
T Consensus 130 ~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~------~~~---~~~l~~L~-~L~ls~n~-l~~----l--~l~~l 190 (457)
T 3bz5_A 130 TYLNCARNTLTEID--VSHNTQLTELDCHLNKKIT------KLD---VTPQTQLT-TLDCSFNK-ITE----L--DVSQN 190 (457)
T ss_dssp CEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCC------CCC---CTTCTTCC-EEECCSSC-CCC----C--CCTTC
T ss_pred CEEECCCCccceec--cccCCcCCEEECCCCCccc------ccc---cccCCcCC-EEECCCCc-cce----e--ccccC
Confidence 999854 443 7888999999876553322 123 33444444 56665421 111 1 27788
Q ss_pred CCCCceEEEEecCCCCchhhhhhhhhHHHHhhHHHHHhhcCCCCCcceEEEeeeCCCCCCCcccCccCccEEEEcCcCCC
Q 038751 687 KNLIDLILIFNEREESDDEKASEEMNEEKEAKHEAVCEALRPPPDIKSLEIMVFKGRTPSNWIGSLNKLKMLTLNSFVKC 766 (915)
Q Consensus 687 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~ 766 (915)
++|+.|+++.|.... . .+..+++|+.|++++|....+| ++.+++|+.|++++|...
T Consensus 191 ~~L~~L~l~~N~l~~----------------~------~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~ 246 (457)
T 3bz5_A 191 KLLNRLNCDTNNITK----------------L------DLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLT 246 (457)
T ss_dssp TTCCEEECCSSCCSC----------------C------CCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCS
T ss_pred CCCCEEECcCCcCCe----------------e------ccccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCC
Confidence 899999999886432 1 3667899999999999988888 778999999999998543
Q ss_pred CCCCCCCCCCCc----------ceeeccccccceEeCccccCCcccccccccccCCCccc-ccCcccceeeecCcccccc
Q 038751 767 EIMPPLGKLPSL----------EILRIWHMRSVKRVGDEFLGMEISDHIHIHGTSSSSSV-IAFPKLQKLELTGMDELEE 835 (915)
Q Consensus 767 ~~l~~l~~Lp~L----------~~L~L~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~-~~f~~L~~L~l~~~~~l~~ 835 (915)
. +| .+.+++| +.|++++|..+..+|. .....++.+++++|.....+ ..+++|+.|++.++++++.
T Consensus 247 ~-~~-~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~--~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~ 322 (457)
T 3bz5_A 247 E-LD-VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQA--EGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVY 322 (457)
T ss_dssp C-CC-CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEEC--TTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCE
T ss_pred C-cC-HHHCCCCCEEeccCCCCCEEECCCCccCCcccc--cccccCCEEECCCCcccceeccCCCcceEechhhcccCCE
Confidence 3 33 3445544 5566666665566652 34577889999988643321 2344555555555555444
Q ss_pred cccCC-----CCcccCcccceeecccCccccCCC
Q 038751 836 WDFGN-----DDITIMPHIKSLYITYCEKLKSLP 864 (915)
Q Consensus 836 ~~~~~-----~~~~~lp~L~~L~l~~c~~L~~lp 864 (915)
+.... -+++.+++|+.|+++++ ++..+|
T Consensus 323 L~L~~N~l~~l~l~~l~~L~~L~l~~N-~l~~l~ 355 (457)
T 3bz5_A 323 LYLNNTELTELDVSHNTKLKSLSCVNA-HIQDFS 355 (457)
T ss_dssp EECTTCCCSCCCCTTCTTCSEEECCSS-CCCBCT
T ss_pred EECCCCcccccccccCCcCcEEECCCC-CCCCcc
Confidence 33211 12558899999999987 555554
No 37
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.70 E-value=3.1e-17 Score=187.52 Aligned_cols=348 Identities=14% Similarity=0.133 Sum_probs=209.5
Q ss_pred EEEEEccccccCccccCCCCceeEEEeccCCCCceeccccc-hhccccCCcceeeecCCCCCcccc-ccccCCCcCCCcc
Q 038751 537 HLMLVLGFWAKFPFSIFDAKTLHSLILVYSSNNQVAASPVL-QGLFDQLTCLRALKIEDLPPTIKI-PKGLENLIHLRYL 614 (915)
Q Consensus 537 ~Lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~lrv~~~~l-p~~i~~L~~Lr~L~l~~~~~~~~l-P~~i~~L~~Lr~L 614 (915)
.+...+..+..+|. -.++|++|+++++. +..+ |..|+++++|++|+++++.....+ |..+.++++|++|
T Consensus 14 ~~~c~~~~l~~lp~---l~~~l~~L~Ls~n~------i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L 84 (455)
T 3v47_A 14 NAICINRGLHQVPE---LPAHVNYVDLSLNS------IAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIIL 84 (455)
T ss_dssp EEECCSSCCSSCCC---CCTTCCEEECCSSC------CCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEE
T ss_pred ccCcCCCCcccCCC---CCCccCEEEecCCc------cCcCChhHhccCccccEEECcCCcccceECcccccccccCCEE
Confidence 34444555555555 23789999999984 4444 788999999999999998776455 5669999999999
Q ss_pred cCc-----cc-CCcCCCCCCCCccCceeecccCCccCCCCcCCCCCcCccccccceeEcCccCCCChhhHhHhh-ccCCC
Q 038751 615 KLS-----MV-PNGIERLTSLRTLSEFAVARVGGKYSSKSCNLEGLRPLNHLRGFLQISGLGNVTDADEAKNAH-LEKKK 687 (915)
Q Consensus 615 ~l~-----~l-P~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~-l~~l~ 687 (915)
+++ .+ |..++++++|++|++..+...... ..-..+.++++|+ .|.+.+.. .....+.. +.+++
T Consensus 85 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-----~~~~~~~~l~~L~-~L~L~~n~----l~~~~~~~~~~~l~ 154 (455)
T 3v47_A 85 KLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAV-----LSGNFFKPLTSLE-MLVLRDNN----IKKIQPASFFLNMR 154 (455)
T ss_dssp ECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHH-----HHSSTTTTCTTCC-EEECCSSB----CCSCCCCGGGGGCT
T ss_pred eCCCCccCccChhhccCcccCCEEeCCCCCCCccc-----cCcccccCcccCC-EEECCCCc----cCccCcccccCCCC
Confidence 954 33 677999999999988755432200 0001134444444 66665422 11121222 67889
Q ss_pred CCCceEEEEecCCCCchhhhhhhhh---------------HH-HHhhHHHHHhhcCCCCCcceEEEeeeCCCC-CCCccc
Q 038751 688 NLIDLILIFNEREESDDEKASEEMN---------------EE-KEAKHEAVCEALRPPPDIKSLEIMVFKGRT-PSNWIG 750 (915)
Q Consensus 688 ~L~~L~L~~~~~~~~~~~~~~~~~~---------------~~-~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~p~~~~ 750 (915)
+|+.|+++.|........... ... .. ...........+..+++|+.|++++|.... .|.++.
T Consensus 155 ~L~~L~L~~n~l~~~~~~~l~-~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~ 233 (455)
T 3v47_A 155 RFHVLDLTFNKVKSICEEDLL-NFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFF 233 (455)
T ss_dssp TCCEEECTTCCBSCCCTTTSG-GGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHH
T ss_pred cccEEeCCCCcccccChhhhh-ccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhh
Confidence 999999988753321000000 000 00 000000001112223445555555544321 122222
Q ss_pred ---CccCccEEEEcCcCCCCCC------CC-----CC--CCCCcceeeccccccceEeCccccCCcccccccccccCCCc
Q 038751 751 ---SLNKLKMLTLNSFVKCEIM------PP-----LG--KLPSLEILRIWHMRSVKRVGDEFLGMEISDHIHIHGTSSSS 814 (915)
Q Consensus 751 ---~l~~L~~L~L~~~~~~~~l------~~-----l~--~Lp~L~~L~L~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~ 814 (915)
..++|+.|++++|...... +. +. ..++|++|++++|.-....+..+.....++.|++++|....
T Consensus 234 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 313 (455)
T 3v47_A 234 DAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINK 313 (455)
T ss_dssp HHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCE
T ss_pred ccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccc
Confidence 1245555555554322111 00 11 23689999999988555556667778899999999987643
Q ss_pred ----ccccCcccceeeecCcccccccccCCCCcccCcccceeecccCccccCCCcCCCCCCCcCeEeEcCCcchhHhhcc
Q 038751 815 ----SVIAFPKLQKLELTGMDELEEWDFGNDDITIMPHIKSLYITYCEKLKSLPELLLRSTTLESLTIFGVPIVQESFKR 890 (915)
Q Consensus 815 ----~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~lp~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~c~~l~~~~~~ 890 (915)
.+..+++|+.|+++++. +..+. +..+..+++|+.|++++|..-...|..+..+++|++|++++|..- .
T Consensus 314 ~~~~~~~~l~~L~~L~Ls~N~-l~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-----~ 385 (455)
T 3v47_A 314 IDDNAFWGLTHLLKLNLSQNF-LGSID--SRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK-----S 385 (455)
T ss_dssp ECTTTTTTCTTCCEEECCSSC-CCEEC--GGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS-----C
T ss_pred cChhHhcCcccCCEEECCCCc-cCCcC--hhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccc-----c
Confidence 45678999999999873 44432 223568999999999999543344788999999999999998542 1
Q ss_pred CCCCCcccccCCCcceeccccc
Q 038751 891 RTEKDWSKISHIPNIKIQNIVF 912 (915)
Q Consensus 891 ~~~~~~~~i~~ip~v~~~~~~~ 912 (915)
.....+.....+..+.+.+|.+
T Consensus 386 ~~~~~~~~l~~L~~L~l~~N~l 407 (455)
T 3v47_A 386 VPDGIFDRLTSLQKIWLHTNPW 407 (455)
T ss_dssp CCTTTTTTCTTCCEEECCSSCB
T ss_pred CCHhHhccCCcccEEEccCCCc
Confidence 1112234455666666766654
No 38
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.70 E-value=2.7e-16 Score=193.45 Aligned_cols=304 Identities=16% Similarity=0.120 Sum_probs=188.4
Q ss_pred EEEEEEccccccCccccCCCCceeEEEeccCCCCceecccc-chhccccCCcceeeecCCCCCcccc-ccccCCCcCCCc
Q 038751 536 RHLMLVLGFWAKFPFSIFDAKTLHSLILVYSSNNQVAASPV-LQGLFDQLTCLRALKIEDLPPTIKI-PKGLENLIHLRY 613 (915)
Q Consensus 536 r~Lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~lrv~~~~-lp~~i~~L~~Lr~L~l~~~~~~~~l-P~~i~~L~~Lr~ 613 (915)
+..+.+++.+...|. -.++|++|++++|. +.. .|..|+++.+|++|++++|.....+ |..+.+|++|++
T Consensus 7 ~~~dcs~~~L~~vP~---lp~~l~~LdLs~N~------i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~ 77 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ---VLNTTERLLLSFNY------IRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRI 77 (844)
T ss_dssp EEEEESCCCSSCCCS---SCTTCCEEEEESCC------CCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCE
T ss_pred eEEEccCCCCCCCCC---CCCCcCEEECCCCc------CCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCE
Confidence 345555666666665 45899999999984 444 4688999999999999998655566 778999999999
Q ss_pred ccCc-----cc-CCcCCCCCCCCccCceeecccCCccCCCCcCCCC--CcCccccccceeEcCccCCCChhhHhHhhccC
Q 038751 614 LKLS-----MV-PNGIERLTSLRTLSEFAVARVGGKYSSKSCNLEG--LRPLNHLRGFLQISGLGNVTDADEAKNAHLEK 685 (915)
Q Consensus 614 L~l~-----~l-P~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~--L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~ 685 (915)
|+++ .+ |..++++++|++|++..+..... .+.. +.+|++|+ .|.+....- .. ......+.+
T Consensus 78 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~-------~~~~~~~~~L~~L~-~L~Ls~N~l-~~--~~~~~~~~~ 146 (844)
T 3j0a_A 78 LDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDA-------VLKDGYFRNLKALT-RLDLSKNQI-RS--LYLHPSFGK 146 (844)
T ss_dssp EECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSC-------CSTTCCCSSCSSCC-EEEEESCCC-CC--CCCCGGGGT
T ss_pred EECCCCcCcccCHhHccCCcccCEeeCcCCCCCcc-------cccCccccccCCCC-EEECCCCcc-cc--cccchhHhh
Confidence 9954 33 77899999999998876644321 1111 44455555 677765221 11 111245789
Q ss_pred CCCCCceEEEEecCCCCchhhhhhhhhHHHHhhHHHHHhhcCCC--CCcceEEEeeeCCCC-CCCcccCccC------cc
Q 038751 686 KKNLIDLILIFNEREESDDEKASEEMNEEKEAKHEAVCEALRPP--PDIKSLEIMVFKGRT-PSNWIGSLNK------LK 756 (915)
Q Consensus 686 l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~-~p~~~~~l~~------L~ 756 (915)
+++|+.|+++.|...... ...+.++ ++|+.|++.+|.... .|..++.+++ |+
T Consensus 147 L~~L~~L~Ls~N~i~~~~-------------------~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~ 207 (844)
T 3j0a_A 147 LNSLKSIDFSSNQIFLVC-------------------EHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLE 207 (844)
T ss_dssp CSSCCEEEEESSCCCCCC-------------------SGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBS
T ss_pred CCCCCEEECCCCcCCeeC-------------------HHHcccccCCccceEECCCCccccccccchhhcCCccccCcee
Confidence 999999999988643210 0011111 567777776665433 2333333333 66
Q ss_pred EEEEcCcCCCCCCCC-------------------------------------CCC--CCCcceeeccccccceEeCcccc
Q 038751 757 MLTLNSFVKCEIMPP-------------------------------------LGK--LPSLEILRIWHMRSVKRVGDEFL 797 (915)
Q Consensus 757 ~L~L~~~~~~~~l~~-------------------------------------l~~--Lp~L~~L~L~~~~~l~~~~~~~~ 797 (915)
.|++++|......+. +.. .++|+.|++++|.-....+..+.
T Consensus 208 ~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~ 287 (844)
T 3j0a_A 208 ILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFE 287 (844)
T ss_dssp EEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSS
T ss_pred EEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhh
Confidence 777766532111110 111 25677777777653333344455
Q ss_pred CCcccccccccccCCC----cccccCcccceeeecCcccccccccCCCCcccCcccceeecccCccccCCCc-CCCCCCC
Q 038751 798 GMEISDHIHIHGTSSS----SSVIAFPKLQKLELTGMDELEEWDFGNDDITIMPHIKSLYITYCEKLKSLPE-LLLRSTT 872 (915)
Q Consensus 798 ~~~~l~~l~l~~~~~~----~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~lp~L~~L~l~~c~~L~~lp~-~l~~l~~ 872 (915)
....++.|++++|... ..+..+++|+.|+++++. +..+. +..+..+++|+.|++++| .+..+|. .+.++++
T Consensus 288 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~--~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~ 363 (844)
T 3j0a_A 288 TLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNL-LGELY--SSNFYGLPKVAYIDLQKN-HIAIIQDQTFKFLEK 363 (844)
T ss_dssp SCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCC-CSCCC--SCSCSSCTTCCEEECCSC-CCCCCCSSCSCSCCC
T ss_pred cCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCC-CCccC--HHHhcCCCCCCEEECCCC-CCCccChhhhcCCCC
Confidence 5667777777776543 234567777777777753 33221 223556777788887777 4566553 4666777
Q ss_pred cCeEeEcCCc
Q 038751 873 LESLTIFGVP 882 (915)
Q Consensus 873 L~~L~l~~c~ 882 (915)
|+.|++++|.
T Consensus 364 L~~L~Ls~N~ 373 (844)
T 3j0a_A 364 LQTLDLRDNA 373 (844)
T ss_dssp CCEEEEETCC
T ss_pred CCEEECCCCC
Confidence 7788777764
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.69 E-value=8.6e-17 Score=179.76 Aligned_cols=299 Identities=13% Similarity=0.085 Sum_probs=213.4
Q ss_pred CCCCceeEEEeccCCCCceeccccchhc-cccCCcceeeecCCCCCccccccccCCCcCCCcccCc-----ccCC-cCCC
Q 038751 553 FDAKTLHSLILVYSSNNQVAASPVLQGL-FDQLTCLRALKIEDLPPTIKIPKGLENLIHLRYLKLS-----MVPN-GIER 625 (915)
Q Consensus 553 ~~~~~Lr~L~l~~~~~~lrv~~~~lp~~-i~~L~~Lr~L~l~~~~~~~~lP~~i~~L~~Lr~L~l~-----~lP~-~i~~ 625 (915)
..+++++.|.+.++ .+..+|.. +.++++|++|+++++......|..+.++++|++|+++ .+|+ .+++
T Consensus 42 ~~l~~l~~l~l~~~------~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 115 (390)
T 3o6n_A 42 ITLNNQKIVTFKNS------TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQN 115 (390)
T ss_dssp GGGCCCSEEEEESC------EESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred cccCCceEEEecCC------chhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcC
Confidence 45789999999887 56778765 6899999999999998873344589999999999954 4544 4789
Q ss_pred CCCCCccCceeecccCCccCCCCcCCCCCcCccccccceeEcCccCCCChhhHhHhhccCCCCCCceEEEEecCCCCchh
Q 038751 626 LTSLRTLSEFAVARVGGKYSSKSCNLEGLRPLNHLRGFLQISGLGNVTDADEAKNAHLEKKKNLIDLILIFNEREESDDE 705 (915)
Q Consensus 626 L~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~ 705 (915)
+++|++|++..+..... +.. .+.++++|+ .|.+.+. ......+..+.++++|+.|+++.|....
T Consensus 116 l~~L~~L~L~~n~l~~l-----~~~--~~~~l~~L~-~L~L~~n----~l~~~~~~~~~~l~~L~~L~l~~n~l~~---- 179 (390)
T 3o6n_A 116 VPLLTVLVLERNDLSSL-----PRG--IFHNTPKLT-TLSMSNN----NLERIEDDTFQATTSLQNLQLSSNRLTH---- 179 (390)
T ss_dssp CTTCCEEECCSSCCCCC-----CTT--TTTTCTTCC-EEECCSS----CCCBCCTTTTSSCTTCCEEECCSSCCSB----
T ss_pred CCCCCEEECCCCccCcC-----CHH--HhcCCCCCc-EEECCCC----ccCccChhhccCCCCCCEEECCCCcCCc----
Confidence 99999998876543321 111 123444444 5666542 2222233457888999999999886431
Q ss_pred hhhhhhhHHHHhhHHHHHhhcCCCCCcceEEEeeeCCCCCCCcccCccCccEEEEcCcCCCCCCCCCCCCCCcceeeccc
Q 038751 706 KASEEMNEEKEAKHEAVCEALRPPPDIKSLEIMVFKGRTPSNWIGSLNKLKMLTLNSFVKCEIMPPLGKLPSLEILRIWH 785 (915)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~Lp~L~~L~L~~ 785 (915)
. .+..+++|+.|++.++....+ ...++|+.|++++|... .+|. ..+++|++|++++
T Consensus 180 ------------~------~~~~l~~L~~L~l~~n~l~~~----~~~~~L~~L~l~~n~l~-~~~~-~~~~~L~~L~l~~ 235 (390)
T 3o6n_A 180 ------------V------DLSLIPSLFHANVSYNLLSTL----AIPIAVEELDASHNSIN-VVRG-PVNVELTILKLQH 235 (390)
T ss_dssp ------------C------CGGGCTTCSEEECCSSCCSEE----ECCSSCSEEECCSSCCC-EEEC-CCCSSCCEEECCS
T ss_pred ------------c------ccccccccceeeccccccccc----CCCCcceEEECCCCeee-eccc-cccccccEEECCC
Confidence 0 234468899999998865433 34568999999988543 3332 3468999999999
Q ss_pred cccceEeCccccCCcccccccccccCCC----cccccCcccceeeecCcccccccccCCCCcccCcccceeecccCcccc
Q 038751 786 MRSVKRVGDEFLGMEISDHIHIHGTSSS----SSVIAFPKLQKLELTGMDELEEWDFGNDDITIMPHIKSLYITYCEKLK 861 (915)
Q Consensus 786 ~~~l~~~~~~~~~~~~l~~l~l~~~~~~----~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~lp~L~~L~l~~c~~L~ 861 (915)
|. +... ..+.....++.|++++|... ..+..+++|+.|++.++ .+..++.. ...+|+|+.|++++| .+.
T Consensus 236 n~-l~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~---~~~l~~L~~L~L~~n-~l~ 308 (390)
T 3o6n_A 236 NN-LTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLY---GQPIPTLKVLDLSHN-HLL 308 (390)
T ss_dssp SC-CCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSS-CCCEEECS---SSCCTTCCEEECCSS-CCC
T ss_pred CC-Cccc-HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCC-cCcccCcc---cCCCCCCCEEECCCC-cce
Confidence 87 5444 34556778999999998654 34567899999999986 45555432 347899999999999 688
Q ss_pred CCCcCCCCCCCcCeEeEcCCcchhHhhccCCCCCcccccCCCcceeccccc
Q 038751 862 SLPELLLRSTTLESLTIFGVPIVQESFKRRTEKDWSKISHIPNIKIQNIVF 912 (915)
Q Consensus 862 ~lp~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~ip~v~~~~~~~ 912 (915)
.+|..+..+++|++|++++|+... .+......+..+.+.+|.+
T Consensus 309 ~~~~~~~~l~~L~~L~L~~N~i~~--------~~~~~~~~L~~L~l~~N~~ 351 (390)
T 3o6n_A 309 HVERNQPQFDRLENLYLDHNSIVT--------LKLSTHHTLKNLTLSHNDW 351 (390)
T ss_dssp CCGGGHHHHTTCSEEECCSSCCCC--------CCCCTTCCCSEEECCSSCE
T ss_pred ecCccccccCcCCEEECCCCccce--------eCchhhccCCEEEcCCCCc
Confidence 999888889999999999997521 1233455666677776654
No 40
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.69 E-value=6.2e-16 Score=174.26 Aligned_cols=302 Identities=12% Similarity=0.034 Sum_probs=183.1
Q ss_pred ccCccccchHHHHHHHHHH-hcccccccCceEEEEE--EecCCCcHHHHHHHHhcccccc---cCCC-eEEEEEeCCCCC
Q 038751 169 NVSDVRGRDEEKNILKRKL-LCESNEERNAVQIISL--VGMGGIGKTTLAQFAYNDKDVI---ENFD-KRIWVCVSDPFD 241 (915)
Q Consensus 169 ~~~~~~Gr~~~~~~l~~~L-~~~~~~~~~~~~vi~I--~G~gGiGKTtLa~~v~~~~~~~---~~F~-~~~wv~vs~~~~ 241 (915)
.+..++||+.+++++.+.+ .....+.....+.+.| +|++|+||||||+.+++..... ..|. .++|+++....+
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPN 99 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCS
T ss_pred CCCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCC
Confidence 3467999999999999998 5322100013456666 9999999999999999843211 1122 357888777788
Q ss_pred HHHHHHHHHHHhhCCCCC-cccHHHHHHHHHHHhc--cCeEEEEEeCCCCCC------ccChhhhHHhhhcC---C--CC
Q 038751 242 EFRIAKAIIEGLEGSLPN-LRELNSLLEYIHTSIK--EKKFFLILDDVWPDD------YSKWEPFHNCLMNG---L--CG 307 (915)
Q Consensus 242 ~~~~~~~i~~~l~~~~~~-~~~~~~~~~~l~~~l~--~k~~LlVlDdvw~~~------~~~~~~l~~~l~~~---~--~g 307 (915)
...++..++.+++...+. ..+...+...+.+.+. +++++||+||+|+-. ...+..+...+... . .+
T Consensus 100 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 179 (412)
T 1w5s_A 100 LYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNR 179 (412)
T ss_dssp HHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCB
T ss_pred HHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCce
Confidence 899999999998764332 2334556666666664 679999999997522 12233333333322 1 34
Q ss_pred ceEEEEcCchHHHhhh--------cC-cCeEeCCCCCHHHHHHHHHHhH---cCCCCCCchhHHHHHHHHHHHhcC----
Q 038751 308 SRILVTTRKETVARMM--------ES-TDVISIKELSEQECWSLFKRFA---FSGRSPTECEQLEEIGRKIVGKCK---- 371 (915)
Q Consensus 308 s~iivTtR~~~v~~~~--------~~-~~~~~l~~L~~~~~~~lf~~~~---~~~~~~~~~~~l~~~~~~i~~~c~---- 371 (915)
..+|+||+...+...+ .. ...+++.+++.++++++|..++ +... ... .+....|++.|+
T Consensus 180 v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~--~~~---~~~~~~i~~~~~~~~~ 254 (412)
T 1w5s_A 180 IGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDT--VWE---PRHLELISDVYGEDKG 254 (412)
T ss_dssp EEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTT--SCC---HHHHHHHHHHHCGGGT
T ss_pred EEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCC--CCC---hHHHHHHHHHHHHhcc
Confidence 4588888765533211 11 2239999999999999997653 3211 111 245677888899
Q ss_pred --CCchHHHHHHhHhh-----cC---CCHHHHHHHHhhhccccccccccchHHHHHhhcCCChHhhhHHhHhccCC--CC
Q 038751 372 --GLPLAAKTIGSLLR-----FK---KTREEWHIILNSEMWQLEEFERGLLAPLLLSYNDLPSAIKRCFLYCAVFP--KD 439 (915)
Q Consensus 372 --G~PLai~~~~~~l~-----~~---~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~~~s~fp--~~ 439 (915)
|.|..+..++.... .. -+.+.+........ . ...+.-++..||++.+.++..++.+. .+
T Consensus 255 ~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~-------~--~~~~~~~l~~l~~~~~~~l~aia~l~~~~~ 325 (412)
T 1w5s_A 255 GDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENE-------A--ASIQTHELEALSIHELIILRLIAEATLGGM 325 (412)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC---------------CCSSSSSCHHHHHHHHHHHHHHHTTC
T ss_pred CCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh-------c--cchHHHHHHcCCHHHHHHHHHHHHHHhcCC
Confidence 99976665543321 01 12333333322110 0 22334467889999999999888753 23
Q ss_pred cccChHHHHHHHH--H-cCCcccCCCccHHHHHHHHHHHHHHccccccccc
Q 038751 440 YNLDKDELVKLWM--A-QGYIEQKGNIEMEMTGEWYFDFLATRSFFQEFDE 487 (915)
Q Consensus 440 ~~i~~~~Li~~W~--a-eg~i~~~~~~~~e~~~~~~l~~L~~~sll~~~~~ 487 (915)
..+....+...+. + .-. . ....+ ......++++|+..++|.....
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~-~-~~~~~-~~~~~~~l~~L~~~gli~~~~~ 373 (412)
T 1w5s_A 326 EWINAGLLRQRYEDASLTMY-N-VKPRG-YTQYHIYLKHLTSLGLVDAKPS 373 (412)
T ss_dssp SSBCHHHHHHHHHHHHHHHS-C-CCCCC-HHHHHHHHHHHHHTTSEEEECC
T ss_pred CCccHHHHHHHHHHHHHhhc-C-CCCCC-HHHHHHHHHHHHhCCCEEeecc
Confidence 3455666555442 2 111 0 01111 3445678999999999987643
No 41
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.68 E-value=1.5e-16 Score=191.74 Aligned_cols=98 Identities=20% Similarity=0.160 Sum_probs=64.5
Q ss_pred ceEEEEEEccccccC-ccccCCCCceeEEEeccCCCCceeccccchhccccCCcceeeecCCCCCcc-----cccc----
Q 038751 534 KLRHLMLVLGFWAKF-PFSIFDAKTLHSLILVYSSNNQVAASPVLQGLFDQLTCLRALKIEDLPPTI-----KIPK---- 603 (915)
Q Consensus 534 ~~r~Lsl~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~lrv~~~~lp~~i~~L~~Lr~L~l~~~~~~~-----~lP~---- 603 (915)
.++.|++++|.+... +..+..+++|++|.+.+|. .....|..|+++.+|++|+++++.... .+|.
T Consensus 249 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-----l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~ 323 (680)
T 1ziw_A 249 NLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNN-----IQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDF 323 (680)
T ss_dssp CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCC-----BSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTT
T ss_pred CCCEEECCCCCcCccCcccccCcccccEeeCCCCc-----cCccChhhhcCCCCccEEeccchhhhcccccccccccChh
Confidence 478888887776653 4557778888888887774 223345678888888888887543221 3443
Q ss_pred ccCCCcCCCcccCc-----ccC-CcCCCCCCCCccCcee
Q 038751 604 GLENLIHLRYLKLS-----MVP-NGIERLTSLRTLSEFA 636 (915)
Q Consensus 604 ~i~~L~~Lr~L~l~-----~lP-~~i~~L~~L~~L~~~~ 636 (915)
.+..+++|++|+++ .++ ..+..+++|++|++..
T Consensus 324 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 362 (680)
T 1ziw_A 324 SFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSN 362 (680)
T ss_dssp TTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTT
T ss_pred hcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCC
Confidence 57778888888743 333 3467788888877654
No 42
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.68 E-value=2.4e-16 Score=171.09 Aligned_cols=89 Identities=20% Similarity=0.247 Sum_probs=69.5
Q ss_pred ccceEEEEEEccccccCccccCCCCceeEEEeccCCCCceeccccchhccccCCcceeeecCCCCCccccccccCCCcCC
Q 038751 532 QEKLRHLMLVLGFWAKFPFSIFDAKTLHSLILVYSSNNQVAASPVLQGLFDQLTCLRALKIEDLPPTIKIPKGLENLIHL 611 (915)
Q Consensus 532 ~~~~r~Lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~lrv~~~~lp~~i~~L~~Lr~L~l~~~~~~~~lP~~i~~L~~L 611 (915)
...+++|++++|.+..+|..+..+++|++|.+.+| .+..+|..|+++.+|++|++++|.....+|..++..
T Consensus 103 l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n------~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~--- 173 (328)
T 4fcg_A 103 LSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARN------PLRALPASIASLNRLRELSIRACPELTELPEPLAST--- 173 (328)
T ss_dssp GTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESC------CCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEE---
T ss_pred CCCCCEEECCCCCccchhHHHhccCCCCEEECCCC------ccccCcHHHhcCcCCCEEECCCCCCccccChhHhhc---
Confidence 46899999999999888888999999999999998 456889999999999999999987776788766541
Q ss_pred CcccCcccCCcCCCCCCCCccCce
Q 038751 612 RYLKLSMVPNGIERLTSLRTLSEF 635 (915)
Q Consensus 612 r~L~l~~lP~~i~~L~~L~~L~~~ 635 (915)
.++..++.+++|++|++.
T Consensus 174 ------~~~~~~~~l~~L~~L~L~ 191 (328)
T 4fcg_A 174 ------DASGEHQGLVNLQSLRLE 191 (328)
T ss_dssp ------C-CCCEEESTTCCEEEEE
T ss_pred ------cchhhhccCCCCCEEECc
Confidence 122234445555555543
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.68 E-value=8.2e-17 Score=175.61 Aligned_cols=93 Identities=22% Similarity=0.106 Sum_probs=62.4
Q ss_pred cceEEEEEEccccccCccccCCCCceeEEEeccCCCCceeccccc-hhccccCCcceeeecCCCCCccccccccCCCcCC
Q 038751 533 EKLRHLMLVLGFWAKFPFSIFDAKTLHSLILVYSSNNQVAASPVL-QGLFDQLTCLRALKIEDLPPTIKIPKGLENLIHL 611 (915)
Q Consensus 533 ~~~r~Lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~lrv~~~~l-p~~i~~L~~Lr~L~l~~~~~~~~lP~~i~~L~~L 611 (915)
..++.+++.++.+..+|..+. ++|++|.+.++. +..+ |..|+++.+|++|+++++......|..++++++|
T Consensus 33 c~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~------i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 104 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNND------ISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKL 104 (332)
T ss_dssp EETTEEECCSSCCSSCCSCCC--TTCCEEECCSSC------CCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTC
T ss_pred ccCCEEECCCCCccccCCCCC--CCCeEEECCCCc------CCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCC
Confidence 356677777777666665543 578888887773 4444 4578888888888888877764446778888888
Q ss_pred CcccC-----cccCCcCCCCCCCCccCce
Q 038751 612 RYLKL-----SMVPNGIERLTSLRTLSEF 635 (915)
Q Consensus 612 r~L~l-----~~lP~~i~~L~~L~~L~~~ 635 (915)
++|++ ..+|..+. ++|++|++.
T Consensus 105 ~~L~L~~n~l~~l~~~~~--~~L~~L~l~ 131 (332)
T 2ft3_A 105 QKLYISKNHLVEIPPNLP--SSLVELRIH 131 (332)
T ss_dssp CEEECCSSCCCSCCSSCC--TTCCEEECC
T ss_pred CEEECCCCcCCccCcccc--ccCCEEECC
Confidence 88874 34555444 566666554
No 44
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.67 E-value=6.9e-15 Score=161.68 Aligned_cols=293 Identities=14% Similarity=0.104 Sum_probs=181.2
Q ss_pred cccCccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCC------C
Q 038751 168 INVSDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPF------D 241 (915)
Q Consensus 168 ~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~------~ 241 (915)
..+..++||+++++++.+++.. + +++.|+|++|+|||||++++++.. . .+|+++.... +
T Consensus 9 ~~~~~~~gR~~el~~L~~~l~~-------~-~~v~i~G~~G~GKT~Ll~~~~~~~------~-~~~~~~~~~~~~~~~~~ 73 (350)
T 2qen_A 9 TRREDIFDREEESRKLEESLEN-------Y-PLTLLLGIRRVGKSSLLRAFLNER------P-GILIDCRELYAERGHIT 73 (350)
T ss_dssp CSGGGSCSCHHHHHHHHHHHHH-------C-SEEEEECCTTSSHHHHHHHHHHHS------S-EEEEEHHHHHHTTTCBC
T ss_pred CChHhcCChHHHHHHHHHHHhc-------C-CeEEEECCCcCCHHHHHHHHHHHc------C-cEEEEeecccccccCCC
Confidence 3456799999999999998853 1 689999999999999999998742 1 6777765432 5
Q ss_pred HHHHHHHHHHHhhC-----------------CCC-CcccHHHHHHHHHHHhcc-CeEEEEEeCCCCCCc-------cChh
Q 038751 242 EFRIAKAIIEGLEG-----------------SLP-NLRELNSLLEYIHTSIKE-KKFFLILDDVWPDDY-------SKWE 295 (915)
Q Consensus 242 ~~~~~~~i~~~l~~-----------------~~~-~~~~~~~~~~~l~~~l~~-k~~LlVlDdvw~~~~-------~~~~ 295 (915)
...+++.+.+.+.. ..+ ...+..++.+.+.+.... ++++||+||+++.+. ..+.
T Consensus 74 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~ 153 (350)
T 2qen_A 74 REELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLA 153 (350)
T ss_dssp HHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHH
Confidence 66666666665432 000 113455666666665543 499999999975321 1122
Q ss_pred hhHHhhhcCCCCceEEEEcCchHH-Hhh---------h-cC-cCeEeCCCCCHHHHHHHHHHhHcCCCCCCchhHHHHHH
Q 038751 296 PFHNCLMNGLCGSRILVTTRKETV-ARM---------M-ES-TDVISIKELSEQECWSLFKRFAFSGRSPTECEQLEEIG 363 (915)
Q Consensus 296 ~l~~~l~~~~~gs~iivTtR~~~v-~~~---------~-~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~ 363 (915)
.+...... ..+.++|+|++.... ... . +. ...+++.+|+.+|+.+++.......+.... .+.+
T Consensus 154 ~L~~~~~~-~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~----~~~~ 228 (350)
T 2qen_A 154 LFAYAYDS-LPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVP----ENEI 228 (350)
T ss_dssp HHHHHHHH-CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCC----HHHH
T ss_pred HHHHHHHh-cCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCC----HHHH
Confidence 23332222 257789999887643 221 1 11 247999999999999999875422111111 2456
Q ss_pred HHHHHhcCCCchHHHHHHhHhhcCCCHHHHHH-HHhhhccccccccccchHHHHHhhcCC---ChHhhhHHhHhccCCCC
Q 038751 364 RKIVGKCKGLPLAAKTIGSLLRFKKTREEWHI-ILNSEMWQLEEFERGLLAPLLLSYNDL---PSAIKRCFLYCAVFPKD 439 (915)
Q Consensus 364 ~~i~~~c~G~PLai~~~~~~l~~~~~~~~w~~-~~~~~~~~~~~~~~~~~~~l~~sy~~L---~~~~k~cf~~~s~fp~~ 439 (915)
..|++.|+|+|+++..++..+....+...+.. +.+ .+...+.-.+..+ ++..+..+..+|. +
T Consensus 229 ~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~l~~l~~~~~~~~~~l~~la~---g 294 (350)
T 2qen_A 229 EEAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLE-----------VAKGLIMGELEELRRRSPRYVDILRAIAL---G 294 (350)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHH-----------HHHHHHHHHHHHHHHHCHHHHHHHHHHHT---T
T ss_pred HHHHHHhCCCHHHHHHHHHHHhccccHhHHHHHHHH-----------HHHHHHHHHHHHHHhCChhHHHHHHHHHh---C
Confidence 78999999999999998876432222222211 111 0111111112222 7888999999987 2
Q ss_pred cccChHHHHHHHHHcCCcccCCCccHHHHHHHHHHHHHHcccccccccCCCCeeEEEechHHHHHHH
Q 038751 440 YNLDKDELVKLWMAQGYIEQKGNIEMEMTGEWYFDFLATRSFFQEFDEEKEGTVRCKMHDIVHDFAQ 506 (915)
Q Consensus 440 ~~i~~~~Li~~W~aeg~i~~~~~~~~e~~~~~~l~~L~~~sll~~~~~~~~~~~~~~mHdlv~d~a~ 506 (915)
.++...+.....+. . ++.+ ......+++.|++.++|..... .+...|++++++.+
T Consensus 295 -~~~~~~l~~~~~~~-~----~~~~-~~~~~~~l~~L~~~gli~~~~~-----~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 295 -YNRWSLIRDYLAVK-G----TKIP-EPRLYALLENLKKMNWIVEEDN-----TYKIADPVVATVLR 349 (350)
T ss_dssp -CCSHHHHHHHHHHT-T----CCCC-HHHHHHHHHHHHHTTSEEEETT-----EEEESSHHHHHHHT
T ss_pred -CCCHHHHHHHHHHH-h----CCCC-HHHHHHHHHHHHhCCCEEecCC-----EEEEecHHHHHHHc
Confidence 24555555543221 1 0112 3456789999999999986531 34456888888753
No 45
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.67 E-value=1.7e-16 Score=187.43 Aligned_cols=299 Identities=13% Similarity=0.092 Sum_probs=212.7
Q ss_pred CCCCceeEEEeccCCCCceeccccchhc-cccCCcceeeecCCCCCccccccccCCCcCCCcccC-----cccCCc-CCC
Q 038751 553 FDAKTLHSLILVYSSNNQVAASPVLQGL-FDQLTCLRALKIEDLPPTIKIPKGLENLIHLRYLKL-----SMVPNG-IER 625 (915)
Q Consensus 553 ~~~~~Lr~L~l~~~~~~lrv~~~~lp~~-i~~L~~Lr~L~l~~~~~~~~lP~~i~~L~~Lr~L~l-----~~lP~~-i~~ 625 (915)
..+++++.|.+.++ .+..+|.. ++++++|++|+++++......|..++++.+|++|++ +.+|+. +++
T Consensus 48 l~l~~l~~l~l~~~------~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 121 (597)
T 3oja_B 48 ITLNNQKIVTFKNS------TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQN 121 (597)
T ss_dssp GGGCCCSEEEESSC------EESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred ccCCCceEEEeeCC------CCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcC
Confidence 35688999999887 56667754 689999999999999888444558999999999995 455554 689
Q ss_pred CCCCCccCceeecccCCccCCCCcCCCCCcCccccccceeEcCccCCCChhhHhHhhccCCCCCCceEEEEecCCCCchh
Q 038751 626 LTSLRTLSEFAVARVGGKYSSKSCNLEGLRPLNHLRGFLQISGLGNVTDADEAKNAHLEKKKNLIDLILIFNEREESDDE 705 (915)
Q Consensus 626 L~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~ 705 (915)
+++|++|++..+..... ....+. ++++|+ .|.+.+. ......+..+.++++|+.|+++.|....
T Consensus 122 l~~L~~L~L~~n~l~~l----~~~~~~---~l~~L~-~L~Ls~N----~l~~~~~~~~~~l~~L~~L~L~~N~l~~---- 185 (597)
T 3oja_B 122 VPLLTVLVLERNDLSSL----PRGIFH---NTPKLT-TLSMSNN----NLERIEDDTFQATTSLQNLQLSSNRLTH---- 185 (597)
T ss_dssp CTTCCEEECCSSCCCCC----CTTTTT---TCTTCC-EEECCSS----CCCBCCTTTTTTCTTCCEEECTTSCCSB----
T ss_pred CCCCCEEEeeCCCCCCC----CHHHhc---cCCCCC-EEEeeCC----cCCCCChhhhhcCCcCcEEECcCCCCCC----
Confidence 99999998876544321 011223 444444 5666542 2223334457888999999998875431
Q ss_pred hhhhhhhHHHHhhHHHHHhhcCCCCCcceEEEeeeCCCCCCCcccCccCccEEEEcCcCCCCCCCCCCCCCCcceeeccc
Q 038751 706 KASEEMNEEKEAKHEAVCEALRPPPDIKSLEIMVFKGRTPSNWIGSLNKLKMLTLNSFVKCEIMPPLGKLPSLEILRIWH 785 (915)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~Lp~L~~L~L~~ 785 (915)
. .+..+++|+.|++++|.... +...++|+.|++++|... .++. ...++|+.|+|++
T Consensus 186 ------------~------~~~~l~~L~~L~l~~n~l~~----l~~~~~L~~L~ls~n~l~-~~~~-~~~~~L~~L~L~~ 241 (597)
T 3oja_B 186 ------------V------DLSLIPSLFHANVSYNLLST----LAIPIAVEELDASHNSIN-VVRG-PVNVELTILKLQH 241 (597)
T ss_dssp ------------C------CGGGCTTCSEEECCSSCCSE----EECCTTCSEEECCSSCCC-EEEC-SCCSCCCEEECCS
T ss_pred ------------c------ChhhhhhhhhhhcccCcccc----ccCCchhheeeccCCccc-cccc-ccCCCCCEEECCC
Confidence 0 23446889999998886543 345678999999988543 2322 1247899999999
Q ss_pred cccceEeCccccCCcccccccccccCCC----cccccCcccceeeecCcccccccccCCCCcccCcccceeecccCcccc
Q 038751 786 MRSVKRVGDEFLGMEISDHIHIHGTSSS----SSVIAFPKLQKLELTGMDELEEWDFGNDDITIMPHIKSLYITYCEKLK 861 (915)
Q Consensus 786 ~~~l~~~~~~~~~~~~l~~l~l~~~~~~----~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~lp~L~~L~l~~c~~L~ 861 (915)
|. +... ..+.....++.|++++|.+. ..+..+++|+.|+++++ .+..++.. +..+|+|+.|++++| .+.
T Consensus 242 n~-l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~---~~~l~~L~~L~Ls~N-~l~ 314 (597)
T 3oja_B 242 NN-LTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLY---GQPIPTLKVLDLSHN-HLL 314 (597)
T ss_dssp SC-CCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTS-CCCEEECS---SSCCTTCCEEECCSS-CCC
T ss_pred CC-CCCC-hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCC-CCCCCCcc---cccCCCCcEEECCCC-CCC
Confidence 87 4443 45667788999999998763 35668899999999986 45555432 347999999999999 577
Q ss_pred CCCcCCCCCCCcCeEeEcCCcchhHhhccCCCCCcccccCCCcceeccccc
Q 038751 862 SLPELLLRSTTLESLTIFGVPIVQESFKRRTEKDWSKISHIPNIKIQNIVF 912 (915)
Q Consensus 862 ~lp~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~ip~v~~~~~~~ 912 (915)
.+|..+..+++|+.|++++|+.. +.+......+..+.+.+|.+
T Consensus 315 ~i~~~~~~l~~L~~L~L~~N~l~--------~~~~~~~~~L~~L~l~~N~~ 357 (597)
T 3oja_B 315 HVERNQPQFDRLENLYLDHNSIV--------TLKLSTHHTLKNLTLSHNDW 357 (597)
T ss_dssp CCGGGHHHHTTCSEEECCSSCCC--------CCCCCTTCCCSEEECCSSCE
T ss_pred ccCcccccCCCCCEEECCCCCCC--------CcChhhcCCCCEEEeeCCCC
Confidence 99988888999999999999752 11233445566666666544
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.67 E-value=9.6e-17 Score=174.96 Aligned_cols=284 Identities=15% Similarity=0.099 Sum_probs=143.8
Q ss_pred ceEEEEEEccccccCccccCCCCceeEEEeccCCCCceeccccchh-ccccCCcceeeecCCCCCccccccccCCCcCCC
Q 038751 534 KLRHLMLVLGFWAKFPFSIFDAKTLHSLILVYSSNNQVAASPVLQG-LFDQLTCLRALKIEDLPPTIKIPKGLENLIHLR 612 (915)
Q Consensus 534 ~~r~Lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~lrv~~~~lp~-~i~~L~~Lr~L~l~~~~~~~~lP~~i~~L~~Lr 612 (915)
.++.+++.++.+..+|..+. ++|++|.+.++ .+..+|. .|+++.+|++|+++++......|..+.++++|+
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n------~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 103 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNN------KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLE 103 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCC--TTCCEEECCSS------CCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCC
T ss_pred CCeEEEecCCCccccCccCC--CCCeEEECCCC------cCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCC
Confidence 45666666666655554433 56777777776 3444543 677778888888877776634467777777777
Q ss_pred cccCc-----ccCCcCCCCCCCCccCceeecccCCccCCCCcCCCCCcCccccccceeEcCccCCCChhhHhHhhccCCC
Q 038751 613 YLKLS-----MVPNGIERLTSLRTLSEFAVARVGGKYSSKSCNLEGLRPLNHLRGFLQISGLGNVTDADEAKNAHLEKKK 687 (915)
Q Consensus 613 ~L~l~-----~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~l~ 687 (915)
+|+++ .+|..+. ++|++|++..+.... .....+.++++|+ .|.+....- . ........+.+++
T Consensus 104 ~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~~-------~~~~~~~~l~~L~-~L~l~~n~l-~-~~~~~~~~~~~l~ 171 (330)
T 1xku_A 104 RLYLSKNQLKELPEKMP--KTLQELRVHENEITK-------VRKSVFNGLNQMI-VVELGTNPL-K-SSGIENGAFQGMK 171 (330)
T ss_dssp EEECCSSCCSBCCSSCC--TTCCEEECCSSCCCB-------BCHHHHTTCTTCC-EEECCSSCC-C-GGGBCTTGGGGCT
T ss_pred EEECCCCcCCccChhhc--ccccEEECCCCcccc-------cCHhHhcCCcccc-EEECCCCcC-C-ccCcChhhccCCC
Confidence 77743 4444443 456665544322111 0000111222222 333322110 0 0011122344455
Q ss_pred CCCceEEEEecCCCCchhhhhhhhhHHHHhhHHHHHhhcCCCCCcceEEEeeeCCCCC-CCcccCccCccEEEEcCcCCC
Q 038751 688 NLIDLILIFNEREESDDEKASEEMNEEKEAKHEAVCEALRPPPDIKSLEIMVFKGRTP-SNWIGSLNKLKMLTLNSFVKC 766 (915)
Q Consensus 688 ~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-p~~~~~l~~L~~L~L~~~~~~ 766 (915)
+|+.|+++.|.... ++..+ +++|+.|++++|..... |.++..+++|++|+|++|...
T Consensus 172 ~L~~L~l~~n~l~~--------------------l~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 229 (330)
T 1xku_A 172 KLSYIRIADTNITT--------------------IPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS 229 (330)
T ss_dssp TCCEEECCSSCCCS--------------------CCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCC
T ss_pred CcCEEECCCCcccc--------------------CCccc--cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCc
Confidence 55555555443211 00011 14555555555544433 344455555555555555322
Q ss_pred CCCC-CCCCCCCcceeeccccccceEeCccccCCcccccccccccCCCcccccCcccceeeecCcccccccccCCC----
Q 038751 767 EIMP-PLGKLPSLEILRIWHMRSVKRVGDEFLGMEISDHIHIHGTSSSSSVIAFPKLQKLELTGMDELEEWDFGND---- 841 (915)
Q Consensus 767 ~~l~-~l~~Lp~L~~L~L~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~---- 841 (915)
...+ .++.+++|++|++++|. +..+|. .+..+++|+.|++.++. +..++...-
T Consensus 230 ~~~~~~~~~l~~L~~L~L~~N~-l~~lp~--------------------~l~~l~~L~~L~l~~N~-i~~~~~~~f~~~~ 287 (330)
T 1xku_A 230 AVDNGSLANTPHLRELHLNNNK-LVKVPG--------------------GLADHKYIQVVYLHNNN-ISAIGSNDFCPPG 287 (330)
T ss_dssp EECTTTGGGSTTCCEEECCSSC-CSSCCT--------------------TTTTCSSCCEEECCSSC-CCCCCTTSSSCSS
T ss_pred eeChhhccCCCCCCEEECCCCc-CccCCh--------------------hhccCCCcCEEECCCCc-CCccChhhcCCcc
Confidence 2222 24455555555555543 333332 23467888888888763 444431110
Q ss_pred CcccCcccceeecccCcccc--CCCcCCCCCCCcCeEeEcCC
Q 038751 842 DITIMPHIKSLYITYCEKLK--SLPELLLRSTTLESLTIFGV 881 (915)
Q Consensus 842 ~~~~lp~L~~L~l~~c~~L~--~lp~~l~~l~~L~~L~l~~c 881 (915)
.....+.|+.|++.+++... .-|..+..+++|+.++++++
T Consensus 288 ~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 288 YNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp CCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred cccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 01135788889998886422 34566777888999988876
No 47
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.65 E-value=3.1e-17 Score=177.09 Aligned_cols=100 Identities=21% Similarity=0.134 Sum_probs=82.2
Q ss_pred cceEEEEEEccccc---cCccccCCCCceeEEEecc-CCCCceeccccchhccccCCcceeeecCCCCCccccccccCCC
Q 038751 533 EKLRHLMLVLGFWA---KFPFSIFDAKTLHSLILVY-SSNNQVAASPVLQGLFDQLTCLRALKIEDLPPTIKIPKGLENL 608 (915)
Q Consensus 533 ~~~r~Lsl~~~~~~---~~~~~~~~~~~Lr~L~l~~-~~~~lrv~~~~lp~~i~~L~~Lr~L~l~~~~~~~~lP~~i~~L 608 (915)
..+++|+++++.+. ..|..+..+++|++|.+.+ +. ....+|..|+++++|++|+++++.....+|..+.++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~-----l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l 124 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINN-----LVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI 124 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETT-----EESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCc-----ccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCC
Confidence 57899999998886 3678889999999999985 53 344688899999999999999888876889899999
Q ss_pred cCCCcccCc------ccCCcCCCCCCCCccCceee
Q 038751 609 IHLRYLKLS------MVPNGIERLTSLRTLSEFAV 637 (915)
Q Consensus 609 ~~Lr~L~l~------~lP~~i~~L~~L~~L~~~~~ 637 (915)
++|++|+++ .+|..++++++|++|++..+
T Consensus 125 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 159 (313)
T 1ogq_A 125 KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN 159 (313)
T ss_dssp TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS
T ss_pred CCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCC
Confidence 999999854 46777888888888876544
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.65 E-value=3.8e-16 Score=170.34 Aligned_cols=97 Identities=21% Similarity=0.208 Sum_probs=79.3
Q ss_pred cceEEEEEEccccccC-ccccCCCCceeEEEeccCCCCceeccccc-hhccccCCcceeeecCCCCCccccccccCCCcC
Q 038751 533 EKLRHLMLVLGFWAKF-PFSIFDAKTLHSLILVYSSNNQVAASPVL-QGLFDQLTCLRALKIEDLPPTIKIPKGLENLIH 610 (915)
Q Consensus 533 ~~~r~Lsl~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~lrv~~~~l-p~~i~~L~~Lr~L~l~~~~~~~~lP~~i~~L~~ 610 (915)
..++.|+++++.+... +..+..+++|++|.+.+|. +..+ |..|+++++|++|+++++... .+|..+. .+
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~------l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~ 124 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK------ISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SS 124 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC------CCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TT
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCc------cCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--cc
Confidence 6899999999988765 4578999999999999884 4444 788999999999999999887 8998876 79
Q ss_pred CCcccC-----cccCCc-CCCCCCCCccCceeec
Q 038751 611 LRYLKL-----SMVPNG-IERLTSLRTLSEFAVA 638 (915)
Q Consensus 611 Lr~L~l-----~~lP~~-i~~L~~L~~L~~~~~~ 638 (915)
|++|++ ..+|.. +.++++|++|++..+.
T Consensus 125 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~ 158 (332)
T 2ft3_A 125 LVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNP 158 (332)
T ss_dssp CCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCC
T ss_pred CCEEECCCCccCccCHhHhCCCccCCEEECCCCc
Confidence 999984 455554 7788888888766443
No 49
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.64 E-value=6.7e-17 Score=174.48 Aligned_cols=243 Identities=16% Similarity=0.113 Sum_probs=159.3
Q ss_pred CceeEEEeccCCCCceeccc--cchhccccCCcceeeecCC-CCCccccccccCCCcCCCcccC-----c-ccCCcCCCC
Q 038751 556 KTLHSLILVYSSNNQVAASP--VLQGLFDQLTCLRALKIED-LPPTIKIPKGLENLIHLRYLKL-----S-MVPNGIERL 626 (915)
Q Consensus 556 ~~Lr~L~l~~~~~~lrv~~~--~lp~~i~~L~~Lr~L~l~~-~~~~~~lP~~i~~L~~Lr~L~l-----~-~lP~~i~~L 626 (915)
.+++.|.+.++. ... .+|..|+++++|++|++++ +.....+|..++++++|++|++ + .+|..++++
T Consensus 50 ~~l~~L~L~~~~-----l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l 124 (313)
T 1ogq_A 50 YRVNNLDLSGLN-----LPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI 124 (313)
T ss_dssp CCEEEEEEECCC-----CSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGC
T ss_pred ceEEEEECCCCC-----ccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCC
Confidence 579999999884 223 6899999999999999995 6666688999999999999984 3 567778888
Q ss_pred CCCCccCceeecccCCccCCCCcCCCCCcCccccccceeEcCccCCCChhhHhHhhccCCCCCCceEEEEecCCCCchhh
Q 038751 627 TSLRTLSEFAVARVGGKYSSKSCNLEGLRPLNHLRGFLQISGLGNVTDADEAKNAHLEKKKNLIDLILIFNEREESDDEK 706 (915)
Q Consensus 627 ~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~ 706 (915)
++|++|++..+.... ..+..+.++++|+.|+++.|....
T Consensus 125 ~~L~~L~Ls~N~l~~------------------------------------~~p~~~~~l~~L~~L~L~~N~l~~----- 163 (313)
T 1ogq_A 125 KTLVTLDFSYNALSG------------------------------------TLPPSISSLPNLVGITFDGNRISG----- 163 (313)
T ss_dssp TTCCEEECCSSEEES------------------------------------CCCGGGGGCTTCCEEECCSSCCEE-----
T ss_pred CCCCEEeCCCCccCC------------------------------------cCChHHhcCCCCCeEECcCCcccC-----
Confidence 888888765433221 011223445556666665553210
Q ss_pred hhhhhhHHHHhhHHHHHhhcCCCC-CcceEEEeeeCCC-CCCCcccCccCccEEEEcCcCCCCCCC-CCCCCCCcceeec
Q 038751 707 ASEEMNEEKEAKHEAVCEALRPPP-DIKSLEIMVFKGR-TPSNWIGSLNKLKMLTLNSFVKCEIMP-PLGKLPSLEILRI 783 (915)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~-~~p~~~~~l~~L~~L~L~~~~~~~~l~-~l~~Lp~L~~L~L 783 (915)
..+..+..++ +|+.|++++|... ..|..+..++ |+.|+|++|.....+| .++.+++|++|++
T Consensus 164 --------------~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 228 (313)
T 1ogq_A 164 --------------AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHL 228 (313)
T ss_dssp --------------ECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEEC
T ss_pred --------------cCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEEC
Confidence 1122334444 6777777766554 4566666665 8888887775443333 3677888888888
Q ss_pred cccccceEeCccccCCcccccccccccCCCcccccCcccceeeecCcccccccccCCCCcccCcccceeecccCccccCC
Q 038751 784 WHMRSVKRVGDEFLGMEISDHIHIHGTSSSSSVIAFPKLQKLELTGMDELEEWDFGNDDITIMPHIKSLYITYCEKLKSL 863 (915)
Q Consensus 784 ~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~lp~L~~L~l~~c~~L~~l 863 (915)
++|. +...... ...+++|++|+++++.-...+ +..+..+++|+.|++++|...+.+
T Consensus 229 ~~N~-l~~~~~~--------------------~~~l~~L~~L~Ls~N~l~~~~---p~~l~~l~~L~~L~Ls~N~l~~~i 284 (313)
T 1ogq_A 229 AKNS-LAFDLGK--------------------VGLSKNLNGLDLRNNRIYGTL---PQGLTQLKFLHSLNVSFNNLCGEI 284 (313)
T ss_dssp CSSE-ECCBGGG--------------------CCCCTTCCEEECCSSCCEECC---CGGGGGCTTCCEEECCSSEEEEEC
T ss_pred CCCc-eeeecCc--------------------ccccCCCCEEECcCCcccCcC---ChHHhcCcCCCEEECcCCcccccC
Confidence 7765 2211111 235677888888776321122 223557788888888888655577
Q ss_pred CcCCCCCCCcCeEeEcCCcch
Q 038751 864 PELLLRSTTLESLTIFGVPIV 884 (915)
Q Consensus 864 p~~l~~l~~L~~L~l~~c~~l 884 (915)
|.. ..+++|+.|++.++|.+
T Consensus 285 p~~-~~l~~L~~l~l~~N~~l 304 (313)
T 1ogq_A 285 PQG-GNLQRFDVSAYANNKCL 304 (313)
T ss_dssp CCS-TTGGGSCGGGTCSSSEE
T ss_pred CCC-ccccccChHHhcCCCCc
Confidence 765 67888888888888764
No 50
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.64 E-value=2.2e-14 Score=158.05 Aligned_cols=292 Identities=13% Similarity=0.093 Sum_probs=175.2
Q ss_pred ccCccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCC-----CCHH
Q 038751 169 NVSDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDP-----FDEF 243 (915)
Q Consensus 169 ~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-----~~~~ 243 (915)
.+..++||+++++.+.+ +.. +++.|+|++|+|||||++.+.+.. .. ..+|+.+... .+..
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~---------~~v~i~G~~G~GKT~L~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~ 75 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA---------PITLVLGLRRTGKSSIIKIGINEL--NL---PYIYLDLRKFEERNYISYK 75 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS---------SEEEEEESTTSSHHHHHHHHHHHH--TC---CEEEEEGGGGTTCSCCCHH
T ss_pred CHHHhcChHHHHHHHHH-hcC---------CcEEEECCCCCCHHHHHHHHHHhc--CC---CEEEEEchhhccccCCCHH
Confidence 45679999999999999 731 589999999999999999998742 22 2578887643 3445
Q ss_pred HHHHHHHHHhhC-------------CC-----C-----------CcccHHHHHHHHHHHhccCeEEEEEeCCCCCCc---
Q 038751 244 RIAKAIIEGLEG-------------SL-----P-----------NLRELNSLLEYIHTSIKEKKFFLILDDVWPDDY--- 291 (915)
Q Consensus 244 ~~~~~i~~~l~~-------------~~-----~-----------~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~--- 291 (915)
.++..+.+.+.. .. + .......+...+.+..+ ++++||+||+++.+.
T Consensus 76 ~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~ 154 (357)
T 2fna_A 76 DFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRG 154 (357)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTT
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCc
Confidence 555555444310 00 0 01234455555544322 499999999976321
Q ss_pred cChhhhHHhhhcCCCCceEEEEcCchHH-Hhh---------hc-C-cCeEeCCCCCHHHHHHHHHHhHcC-CCCCCchhH
Q 038751 292 SKWEPFHNCLMNGLCGSRILVTTRKETV-ARM---------ME-S-TDVISIKELSEQECWSLFKRFAFS-GRSPTECEQ 358 (915)
Q Consensus 292 ~~~~~l~~~l~~~~~gs~iivTtR~~~v-~~~---------~~-~-~~~~~l~~L~~~~~~~lf~~~~~~-~~~~~~~~~ 358 (915)
..|-.+...+.....+.++|+|++.... ... .. . ...+++.+|+.+++.+++...... ..... .
T Consensus 155 ~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~---~ 231 (357)
T 2fna_A 155 VNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFK---D 231 (357)
T ss_dssp CCCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCC---C
T ss_pred hhHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCC---c
Confidence 2333322333222346789999997653 211 11 1 257899999999999999875421 11111 1
Q ss_pred HHHHHHHHHHhcCCCchHHHHHHhHhhcCCCHHHHHHHHhhhccccccccccchHHHH-Hhhc--CCChHhhhHHhHhcc
Q 038751 359 LEEIGRKIVGKCKGLPLAAKTIGSLLRFKKTREEWHIILNSEMWQLEEFERGLLAPLL-LSYN--DLPSAIKRCFLYCAV 435 (915)
Q Consensus 359 l~~~~~~i~~~c~G~PLai~~~~~~l~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~-~sy~--~L~~~~k~cf~~~s~ 435 (915)
...|++.|+|+|+++..++..+....+...|..-.- ......+...+. +.++ .||+..+..+..+|+
T Consensus 232 ----~~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~l~~~~~~~l~~la~ 301 (357)
T 2fna_A 232 ----YEVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTL------EYAKKLILKEFENFLHGREIARKRYLNIMRTLSK 301 (357)
T ss_dssp ----HHHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHH------HHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTT
T ss_pred ----HHHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHH------HHHHHHHHHHHHHHhhccccccHHHHHHHHHHHc
Confidence 167899999999999999877653333333321110 000000111111 2221 688899999999998
Q ss_pred CCCCcccChHHHHHHHH-HcCCcccCCCccHHHHHHHHHHHHHHcccccccccCCCCeeEEEechHHHHHH
Q 038751 436 FPKDYNLDKDELVKLWM-AQGYIEQKGNIEMEMTGEWYFDFLATRSFFQEFDEEKEGTVRCKMHDIVHDFA 505 (915)
Q Consensus 436 fp~~~~i~~~~Li~~W~-aeg~i~~~~~~~~e~~~~~~l~~L~~~sll~~~~~~~~~~~~~~mHdlv~d~a 505 (915)
+. +...+....- ..|. ..+ ......+++.|++.++|..... .|...|++++++.
T Consensus 302 ---g~--~~~~l~~~~~~~~g~-----~~~-~~~~~~~L~~L~~~gli~~~~~-----~y~f~~~~~~~~l 356 (357)
T 2fna_A 302 ---CG--KWSDVKRALELEEGI-----EIS-DSEIYNYLTQLTKHSWIIKEGE-----KYCPSEPLISLAF 356 (357)
T ss_dssp ---CB--CHHHHHHHHHHHHCS-----CCC-HHHHHHHHHHHHHTTSEEESSS-----CEEESSHHHHHHT
T ss_pred ---CC--CHHHHHHHHHHhcCC-----CCC-HHHHHHHHHHHHhCCCEEecCC-----EEEecCHHHHHhh
Confidence 21 4444443211 1121 011 3456678999999999986532 2445688998764
No 51
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.63 E-value=4e-15 Score=174.11 Aligned_cols=252 Identities=17% Similarity=0.104 Sum_probs=139.4
Q ss_pred ceEEEEEEccccccCccccCCCCceeEEEeccCCCCceeccccchhccccCCcceeeecCCCCCccccccccCCCcCCCc
Q 038751 534 KLRHLMLVLGFWAKFPFSIFDAKTLHSLILVYSSNNQVAASPVLQGLFDQLTCLRALKIEDLPPTIKIPKGLENLIHLRY 613 (915)
Q Consensus 534 ~~r~Lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~lrv~~~~lp~~i~~L~~Lr~L~l~~~~~~~~lP~~i~~L~~Lr~ 613 (915)
.++.|+++++.+..+|..+. ++|++|.+.+| .+..+|. .+.+|++|++++|... .+|. .+.+|++
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N------~l~~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~ 105 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDN------NLTSLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLE 105 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC--TTCSEEEECSC------CCSCCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCE
T ss_pred CCcEEEecCCCcCccChhhC--CCCcEEEecCC------CCCCCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCE
Confidence 46667777777766665554 67777777777 3555665 4677777887777765 6666 5666777
Q ss_pred ccCc-----ccCCcCCCCCCCCccCceeecccCCccCCCCcCCCCCcCccccccceeEcCccCCCChhhHhHhhccCCCC
Q 038751 614 LKLS-----MVPNGIERLTSLRTLSEFAVARVGGKYSSKSCNLEGLRPLNHLRGFLQISGLGNVTDADEAKNAHLEKKKN 688 (915)
Q Consensus 614 L~l~-----~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~l~~ 688 (915)
|+++ .+|. .+++|++|++..+..... + ..+++ |+ .|.+.+.. +... + ....+
T Consensus 106 L~Ls~N~l~~l~~---~l~~L~~L~L~~N~l~~l-----p---~~l~~---L~-~L~Ls~N~-l~~l----~---~~~~~ 162 (622)
T 3g06_A 106 LSIFSNPLTHLPA---LPSGLCKLWIFGNQLTSL-----P---VLPPG---LQ-ELSVSDNQ-LASL----P---ALPSE 162 (622)
T ss_dssp EEECSCCCCCCCC---CCTTCCEEECCSSCCSCC-----C---CCCTT---CC-EEECCSSC-CSCC----C---CCCTT
T ss_pred EECcCCcCCCCCC---CCCCcCEEECCCCCCCcC-----C---CCCCC---CC-EEECcCCc-CCCc----C---CccCC
Confidence 7633 3343 345555555432221110 0 00111 11 22222210 0000 0 01233
Q ss_pred CCceEEEEecCCCCchhhhhhhhhHHHHhhHHHHHhhcCCCCCcceEEEeeeCCCCCCCcccCccCccEEEEcCcCCCCC
Q 038751 689 LIDLILIFNEREESDDEKASEEMNEEKEAKHEAVCEALRPPPDIKSLEIMVFKGRTPSNWIGSLNKLKMLTLNSFVKCEI 768 (915)
Q Consensus 689 L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~ 768 (915)
|+.|+++.|.... +. ..+++|+.|++++|....+|.. +++|+.|++++|. +..
T Consensus 163 L~~L~L~~N~l~~--------------------l~---~~~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~-l~~ 215 (622)
T 3g06_A 163 LCKLWAYNNQLTS--------------------LP---MLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNR-LTS 215 (622)
T ss_dssp CCEEECCSSCCSC--------------------CC---CCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSC-CSS
T ss_pred CCEEECCCCCCCC--------------------Cc---ccCCCCcEEECCCCCCCCCCCc---cchhhEEECcCCc-ccc
Confidence 4444444442110 00 2234455555555554444432 2445555555442 223
Q ss_pred CCCCCCCCCcceeeccccccceEeCccccCCcccccccccccCCCcccccCcccceeeecCcccccccccCCCCcccCcc
Q 038751 769 MPPLGKLPSLEILRIWHMRSVKRVGDEFLGMEISDHIHIHGTSSSSSVIAFPKLQKLELTGMDELEEWDFGNDDITIMPH 848 (915)
Q Consensus 769 l~~l~~Lp~L~~L~L~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~lp~ 848 (915)
+|. .+++|++|++++| .+..-...+++|+.|+++++ .+..++. .+++
T Consensus 216 l~~--~~~~L~~L~Ls~N------------------------~L~~lp~~l~~L~~L~Ls~N-~L~~lp~------~~~~ 262 (622)
T 3g06_A 216 LPA--LPSGLKELIVSGN------------------------RLTSLPVLPSELKELMVSGN-RLTSLPM------LPSG 262 (622)
T ss_dssp CCC--CCTTCCEEECCSS------------------------CCSCCCCCCTTCCEEECCSS-CCSCCCC------CCTT
T ss_pred cCC--CCCCCCEEEccCC------------------------ccCcCCCCCCcCcEEECCCC-CCCcCCc------cccc
Confidence 332 1345555555544 33322246789999999987 4655542 5789
Q ss_pred cceeecccCccccCCCcCCCCCCCcCeEeEcCCcch
Q 038751 849 IKSLYITYCEKLKSLPELLLRSTTLESLTIFGVPIV 884 (915)
Q Consensus 849 L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~c~~l 884 (915)
|+.|++++| ++..+|..+.++++|+.|++++|+..
T Consensus 263 L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 263 LLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp CCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCCCC
T ss_pred CcEEeCCCC-CCCcCCHHHhhccccCEEEecCCCCC
Confidence 999999998 67899999999999999999999753
No 52
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.63 E-value=2.5e-15 Score=163.64 Aligned_cols=285 Identities=14% Similarity=0.121 Sum_probs=187.1
Q ss_pred CCceeEEEeccCCCCceeccccchhccccCCcceeeecCCCCCcccccc-ccCCCcCCCcccCc-----cc-CCcCCCCC
Q 038751 555 AKTLHSLILVYSSNNQVAASPVLQGLFDQLTCLRALKIEDLPPTIKIPK-GLENLIHLRYLKLS-----MV-PNGIERLT 627 (915)
Q Consensus 555 ~~~Lr~L~l~~~~~~lrv~~~~lp~~i~~L~~Lr~L~l~~~~~~~~lP~-~i~~L~~Lr~L~l~-----~l-P~~i~~L~ 627 (915)
..+++.+.+.++ .+..+|..+. .+|++|+++++... .+|. .+.++++|++|+++ .+ |..+++++
T Consensus 30 ~c~l~~l~~~~~------~l~~lp~~~~--~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 100 (330)
T 1xku_A 30 QCHLRVVQCSDL------GLEKVPKDLP--PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLV 100 (330)
T ss_dssp EEETTEEECTTS------CCCSCCCSCC--TTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCT
T ss_pred cCCCeEEEecCC------CccccCccCC--CCCeEEECCCCcCC-EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCC
Confidence 346888888776 4667787664 68999999999887 5554 79999999999954 44 67789999
Q ss_pred CCCccCceeecccCCccCCCCcCCCCCcCccccccceeEcCccCCCChhhHhHhhccCCCCCCceEEEEecCCCCchhhh
Q 038751 628 SLRTLSEFAVARVGGKYSSKSCNLEGLRPLNHLRGFLQISGLGNVTDADEAKNAHLEKKKNLIDLILIFNEREESDDEKA 707 (915)
Q Consensus 628 ~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~ 707 (915)
+|++|++..+..... +..+ .++ |+ .|.+.+. .........+.++++|+.|+++.|....
T Consensus 101 ~L~~L~Ls~n~l~~l-----~~~~--~~~---L~-~L~l~~n----~l~~~~~~~~~~l~~L~~L~l~~n~l~~------ 159 (330)
T 1xku_A 101 KLERLYLSKNQLKEL-----PEKM--PKT---LQ-ELRVHEN----EITKVRKSVFNGLNQMIVVELGTNPLKS------ 159 (330)
T ss_dssp TCCEEECCSSCCSBC-----CSSC--CTT---CC-EEECCSS----CCCBBCHHHHTTCTTCCEEECCSSCCCG------
T ss_pred CCCEEECCCCcCCcc-----Chhh--ccc---cc-EEECCCC----cccccCHhHhcCCccccEEECCCCcCCc------
Confidence 999998765443221 1111 123 33 4555431 1222233456778888888888775321
Q ss_pred hhhhhHHHHhhHHHHHhhcCCCCCcceEEEeeeCCCCCCCcccCccCccEEEEcCcCCCCCC-CCCCCCCCcceeecccc
Q 038751 708 SEEMNEEKEAKHEAVCEALRPPPDIKSLEIMVFKGRTPSNWIGSLNKLKMLTLNSFVKCEIM-PPLGKLPSLEILRIWHM 786 (915)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l-~~l~~Lp~L~~L~L~~~ 786 (915)
.......+..+++|+.|++.+|....+|..+. ++|++|++++|...... ..++.+++|++|++++|
T Consensus 160 -----------~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 226 (330)
T 1xku_A 160 -----------SGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN 226 (330)
T ss_dssp -----------GGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSS
T ss_pred -----------cCcChhhccCCCCcCEEECCCCccccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCC
Confidence 00112345567888888888888777776553 78888888888544332 24778888888888887
Q ss_pred ccceEeCccccCCcccccccccccCCCcccccCcccceeeecCcccccccccCCCCcccCcccceeecccCccccCCCcC
Q 038751 787 RSVKRVGDEFLGMEISDHIHIHGTSSSSSVIAFPKLQKLELTGMDELEEWDFGNDDITIMPHIKSLYITYCEKLKSLPEL 866 (915)
Q Consensus 787 ~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~lp~L~~L~l~~c~~L~~lp~~ 866 (915)
. ++.++... +..+++|+.|+++++ .+..++ ..+..+++|+.|++.+| .+..+|..
T Consensus 227 ~-l~~~~~~~-------------------~~~l~~L~~L~L~~N-~l~~lp---~~l~~l~~L~~L~l~~N-~i~~~~~~ 281 (330)
T 1xku_A 227 S-ISAVDNGS-------------------LANTPHLRELHLNNN-KLVKVP---GGLADHKYIQVVYLHNN-NISAIGSN 281 (330)
T ss_dssp C-CCEECTTT-------------------GGGSTTCCEEECCSS-CCSSCC---TTTTTCSSCCEEECCSS-CCCCCCTT
T ss_pred c-CceeChhh-------------------ccCCCCCCEEECCCC-cCccCC---hhhccCCCcCEEECCCC-cCCccChh
Confidence 6 55444321 347889999999987 355443 23568999999999998 57888743
Q ss_pred CC-------CCCCcCeEeEcCCcchhHhhccCCCCCcccccCCCcceeccc
Q 038751 867 LL-------RSTTLESLTIFGVPIVQESFKRRTEKDWSKISHIPNIKIQNI 910 (915)
Q Consensus 867 l~-------~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~ip~v~~~~~ 910 (915)
.. ..++|+.|+++++|...... ....+.....+..+.+.+|
T Consensus 282 ~f~~~~~~~~~~~l~~l~l~~N~~~~~~i---~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 282 DFCPPGYNTKKASYSGVSLFSNPVQYWEI---QPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp SSSCSSCCTTSCCCSEEECCSSSSCGGGS---CGGGGTTCCCGGGEEC---
T ss_pred hcCCcccccccccccceEeecCccccccc---CccccccccceeEEEeccc
Confidence 22 24789999999998632211 1123444555555655554
No 53
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.61 E-value=7.5e-16 Score=136.70 Aligned_cols=81 Identities=27% Similarity=0.457 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhc--ccccHHHHHHHHHHHHhhcchhhHHH
Q 038751 4 AIVSPLLEQLISISYEEAKQQVRLVAGVGKQVKKLTSNLRAIQAVLNDAEQR--QVKEESVRLWLDQLKETSYDIDDVLD 81 (915)
Q Consensus 4 ~~v~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~L~~~l~~i~~~l~~a~~~--~~~~~~~~~wl~~lr~~ayd~ed~ld 81 (915)
|+|+++++|+++ ++.+|+.++.||++++++|+++|++|++||.||+.+ +..++.++.|+++||++|||+|||||
T Consensus 1 a~v~~ll~KL~~----ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD 76 (115)
T 3qfl_A 1 AAISNLIPKLGE----LLTEEFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVD 76 (115)
T ss_dssp CTTCSHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHH----HHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 578889999999 889999999999999999999999999999999987 56789999999999999999999999
Q ss_pred HHHHHHH
Q 038751 82 EWITARL 88 (915)
Q Consensus 82 ~~~~~~~ 88 (915)
+|.++..
T Consensus 77 ~f~~~~~ 83 (115)
T 3qfl_A 77 KFLVQVD 83 (115)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9999763
No 54
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.61 E-value=2.4e-15 Score=170.60 Aligned_cols=258 Identities=16% Similarity=0.088 Sum_probs=113.3
Q ss_pred cceEEEEEEccccccCccccCCCCceeEEEeccCCCCceeccccchhccccCCcc-------------eeeecCCCCCcc
Q 038751 533 EKLRHLMLVLGFWAKFPFSIFDAKTLHSLILVYSSNNQVAASPVLQGLFDQLTCL-------------RALKIEDLPPTI 599 (915)
Q Consensus 533 ~~~r~Lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~lrv~~~~lp~~i~~L~~L-------------r~L~l~~~~~~~ 599 (915)
..++.+.++++.+..+|.++.++++|++|.+.++. ....+|..++++.+| ++|+++++...
T Consensus 11 ~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~-----~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~- 84 (454)
T 1jl5_A 11 TFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSE-----WERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS- 84 (454)
T ss_dssp -----------------------CCHHHHHHHHHH-----HHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCS-
T ss_pred ccchhhhcccCchhhCChhHhcccchhhhhccCCc-----ccccCCcccccchhcchhhhhhhhccCCCEEEecCCccc-
Confidence 57888888888887788889999999999888774 334677788877765 77777777655
Q ss_pred ccccccCCCcCCCccc-----CcccCCcCCCCCCCCccCceeecccCCccCCCCcCCCCCcCccccccceeEcCccCCCC
Q 038751 600 KIPKGLENLIHLRYLK-----LSMVPNGIERLTSLRTLSEFAVARVGGKYSSKSCNLEGLRPLNHLRGFLQISGLGNVTD 674 (915)
Q Consensus 600 ~lP~~i~~L~~Lr~L~-----l~~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~ 674 (915)
.+|.. ..+|++|+ ++.+|.. +++|++|++..+.... +..+. ++|+ .|.+.+..
T Consensus 85 ~lp~~---~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~---------l~~~~--~~L~-~L~L~~n~---- 142 (454)
T 1jl5_A 85 SLPEL---PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKA---------LSDLP--PLLE-YLGVSNNQ---- 142 (454)
T ss_dssp CCCSC---CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSC---------CCSCC--TTCC-EEECCSSC----
T ss_pred cCCCC---cCCCCEEEccCCcCCccccc---cCCCcEEECCCCccCc---------ccCCC--CCCC-EEECcCCC----
Confidence 55552 24566665 3334432 2455555443221111 11110 1222 23332210
Q ss_pred hhhHhHhhccCCCCCCceEEEEecCCCCchhhhhhhhhHHHHhhHHHHHhhcCCCCCcceEEEeeeCCCCCCCcccCccC
Q 038751 675 ADEAKNAHLEKKKNLIDLILIFNEREESDDEKASEEMNEEKEAKHEAVCEALRPPPDIKSLEIMVFKGRTPSNWIGSLNK 754 (915)
Q Consensus 675 ~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~ 754 (915)
... .+ .+.++++|+.|++++|...........-+........... +..+..+++|+.|++.+|....+|... ++
T Consensus 143 l~~-lp-~~~~l~~L~~L~l~~N~l~~lp~~~~~L~~L~L~~n~l~~-l~~~~~l~~L~~L~l~~N~l~~l~~~~---~~ 216 (454)
T 1jl5_A 143 LEK-LP-ELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEE-LPELQNLPFLTAIYADNNSLKKLPDLP---LS 216 (454)
T ss_dssp CSS-CC-CCTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSS-CCCCTTCTTCCEEECCSSCCSSCCCCC---TT
T ss_pred CCC-Cc-ccCCCCCCCEEECCCCcCcccCCCcccccEEECcCCcCCc-CccccCCCCCCEEECCCCcCCcCCCCc---Cc
Confidence 000 11 2444444444444444221100000000000000000000 123556677777777777666665432 47
Q ss_pred ccEEEEcCcCCCCCCCCCCCCCCcceeeccccccceEeCccccCCcccccccccccCCCcccccCcccceeeecC
Q 038751 755 LKMLTLNSFVKCEIMPPLGKLPSLEILRIWHMRSVKRVGDEFLGMEISDHIHIHGTSSSSSVIAFPKLQKLELTG 829 (915)
Q Consensus 755 L~~L~L~~~~~~~~l~~l~~Lp~L~~L~L~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~f~~L~~L~l~~ 829 (915)
|++|++++|.. ..+|.++.+++|++|++++|. ++.+|.. ...++.+++++|....-...+++|+.|++++
T Consensus 217 L~~L~l~~n~l-~~lp~~~~l~~L~~L~l~~N~-l~~l~~~---~~~L~~L~l~~N~l~~l~~~~~~L~~L~ls~ 286 (454)
T 1jl5_A 217 LESIVAGNNIL-EELPELQNLPFLTTIYADNNL-LKTLPDL---PPSLEALNVRDNYLTDLPELPQSLTFLDVSE 286 (454)
T ss_dssp CCEEECCSSCC-SSCCCCTTCTTCCEEECCSSC-CSSCCSC---CTTCCEEECCSSCCSCCCCCCTTCCEEECCS
T ss_pred ccEEECcCCcC-CcccccCCCCCCCEEECCCCc-CCccccc---ccccCEEECCCCcccccCcccCcCCEEECcC
Confidence 77777777743 366777788888888887765 4444432 2445555555554333222334455555444
No 55
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.61 E-value=2.8e-15 Score=179.03 Aligned_cols=98 Identities=21% Similarity=0.268 Sum_probs=70.7
Q ss_pred cceEEEEEEccccccCc-cccCCCCceeEEEeccCCCCceeccccch-hccccCCcceeeecCCCCCcccccc-ccCCCc
Q 038751 533 EKLRHLMLVLGFWAKFP-FSIFDAKTLHSLILVYSSNNQVAASPVLQ-GLFDQLTCLRALKIEDLPPTIKIPK-GLENLI 609 (915)
Q Consensus 533 ~~~r~Lsl~~~~~~~~~-~~~~~~~~Lr~L~l~~~~~~lrv~~~~lp-~~i~~L~~Lr~L~l~~~~~~~~lP~-~i~~L~ 609 (915)
..+++|++++|.++.++ ..+.++++|++|++++| .+..+| ..|++|++|++|+|++|... .+|. .+.+|.
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N------~i~~i~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~f~~L~ 124 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC------EIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLS 124 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC------CCCEECTTTTTTCTTCCEEECTTCCCC-EECGGGGTTCT
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCC------cCCCcChhHhcCCCCCCEEEccCCcCC-CCCHHHhcCCC
Confidence 67899999999887754 46888999999999887 355554 45777888888888777766 5654 367777
Q ss_pred CCCccc-----CcccCCc-CCCCCCCCccCceee
Q 038751 610 HLRYLK-----LSMVPNG-IERLTSLRTLSEFAV 637 (915)
Q Consensus 610 ~Lr~L~-----l~~lP~~-i~~L~~L~~L~~~~~ 637 (915)
+|++|+ ++.+|.. +++|++|++|++..+
T Consensus 125 ~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N 158 (635)
T 4g8a_A 125 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 158 (635)
T ss_dssp TCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSS
T ss_pred CCCEEECCCCcCCCCChhhhhcCcccCeeccccC
Confidence 777777 3445543 677777777766544
No 56
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.58 E-value=1.9e-14 Score=163.22 Aligned_cols=278 Identities=15% Similarity=0.137 Sum_probs=156.2
Q ss_pred cceEEEEEEccccccCccccCCCCceeEEEeccCCCCceeccccchhccccCCcceeeecCCCCCccccccccCCCcCCC
Q 038751 533 EKLRHLMLVLGFWAKFPFSIFDAKTLHSLILVYSSNNQVAASPVLQGLFDQLTCLRALKIEDLPPTIKIPKGLENLIHLR 612 (915)
Q Consensus 533 ~~~r~Lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~lrv~~~~lp~~i~~L~~Lr~L~l~~~~~~~~lP~~i~~L~~Lr 612 (915)
..+++|++++|.+..++.. .++|++|.+.+| .+..+| .|+++.+|++|++++|... .+|..+ .+|+
T Consensus 111 ~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n------~l~~lp-~~~~l~~L~~L~l~~N~l~-~lp~~~---~~L~ 176 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKALSDL---PPLLEYLGVSNN------QLEKLP-ELQNSSFLKIIDVDNNSLK-KLPDLP---PSLE 176 (454)
T ss_dssp TTCCEEECCSSCCSCCCSC---CTTCCEEECCSS------CCSSCC-CCTTCTTCCEEECCSSCCS-CCCCCC---TTCC
T ss_pred CCCcEEECCCCccCcccCC---CCCCCEEECcCC------CCCCCc-ccCCCCCCCEEECCCCcCc-ccCCCc---cccc
Confidence 4556666665555432211 146666666665 344566 4777777777777777665 566544 3666
Q ss_pred ccc-----CcccCCcCCCCCCCCccCceeecccCCccCCCCcCCCCCcCccccccceeEcCccCCCChhhHhHhhccCCC
Q 038751 613 YLK-----LSMVPNGIERLTSLRTLSEFAVARVGGKYSSKSCNLEGLRPLNHLRGFLQISGLGNVTDADEAKNAHLEKKK 687 (915)
Q Consensus 613 ~L~-----l~~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~l~ 687 (915)
+|+ ++.+| .++++++|++|++..+.... +... ...|+ .|.+.+.. +. ..+ .+..++
T Consensus 177 ~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~---------l~~~--~~~L~-~L~l~~n~-l~----~lp-~~~~l~ 237 (454)
T 1jl5_A 177 FIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKK---------LPDL--PLSLE-SIVAGNNI-LE----ELP-ELQNLP 237 (454)
T ss_dssp EEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS---------CCCC--CTTCC-EEECCSSC-CS----SCC-CCTTCT
T ss_pred EEECcCCcCCcCc-cccCCCCCCEEECCCCcCCc---------CCCC--cCccc-EEECcCCc-CC----ccc-ccCCCC
Confidence 666 34455 46777777777655432221 1111 01233 44444321 11 111 366777
Q ss_pred CCCceEEEEecCCCCchhhhhhhhhHHHHhhHHHHHhhcCCCCCcceEEEeeeCCCCCCCcccCccCccEEEEcCcCCCC
Q 038751 688 NLIDLILIFNEREESDDEKASEEMNEEKEAKHEAVCEALRPPPDIKSLEIMVFKGRTPSNWIGSLNKLKMLTLNSFVKCE 767 (915)
Q Consensus 688 ~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~ 767 (915)
+|+.|+++.|.... +. ..+++|+.|++.+|....+|.+ +++|+.|++++|...
T Consensus 238 ~L~~L~l~~N~l~~--------------------l~---~~~~~L~~L~l~~N~l~~l~~~---~~~L~~L~ls~N~l~- 290 (454)
T 1jl5_A 238 FLTTIYADNNLLKT--------------------LP---DLPPSLEALNVRDNYLTDLPEL---PQSLTFLDVSENIFS- 290 (454)
T ss_dssp TCCEEECCSSCCSS--------------------CC---SCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCS-
T ss_pred CCCEEECCCCcCCc--------------------cc---ccccccCEEECCCCcccccCcc---cCcCCEEECcCCccC-
Confidence 88888887764321 00 1236788888888877777664 367888888877432
Q ss_pred CCCCCCCCCCcceeeccccccceEeCccccCCcccccccccccCCCcccccCcccceeeecCcccccccccCCCCcccCc
Q 038751 768 IMPPLGKLPSLEILRIWHMRSVKRVGDEFLGMEISDHIHIHGTSSSSSVIAFPKLQKLELTGMDELEEWDFGNDDITIMP 847 (915)
Q Consensus 768 ~l~~l~~Lp~L~~L~L~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~lp 847 (915)
.+|.+ .++|++|++++|. +..++.. ...++.+++++|....-...+++|+.|++.++ .+..++. .++
T Consensus 291 ~l~~~--~~~L~~L~l~~N~-l~~i~~~---~~~L~~L~Ls~N~l~~lp~~~~~L~~L~L~~N-~l~~lp~------~l~ 357 (454)
T 1jl5_A 291 GLSEL--PPNLYYLNASSNE-IRSLCDL---PPSLEELNVSNNKLIELPALPPRLERLIASFN-HLAEVPE------LPQ 357 (454)
T ss_dssp EESCC--CTTCCEEECCSSC-CSEECCC---CTTCCEEECCSSCCSCCCCCCTTCCEEECCSS-CCSCCCC------CCT
T ss_pred cccCc--CCcCCEEECcCCc-CCcccCC---cCcCCEEECCCCccccccccCCcCCEEECCCC-ccccccc------hhh
Confidence 23322 2678888888775 5555421 24677788888776553345688888888876 3444432 467
Q ss_pred ccceeecccCcccc--CCCcCCCCC-------------CCcCeEeEcCCcc
Q 038751 848 HIKSLYITYCEKLK--SLPELLLRS-------------TTLESLTIFGVPI 883 (915)
Q Consensus 848 ~L~~L~l~~c~~L~--~lp~~l~~l-------------~~L~~L~l~~c~~ 883 (915)
+|+.|++++|.-.. .+|.++.++ ++|+.|++++|+.
T Consensus 358 ~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l 408 (454)
T 1jl5_A 358 NLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPL 408 (454)
T ss_dssp TCCEEECCSSCCSSCCCCCTTCCEEECCC----------------------
T ss_pred hccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcC
Confidence 88888888885433 467777666 7888888888754
No 57
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.57 E-value=1.5e-15 Score=167.20 Aligned_cols=265 Identities=15% Similarity=0.103 Sum_probs=161.4
Q ss_pred EEEEccccccCccccCCCCceeEEEeccCCCCceeccccchh-ccccCCcceeeecCCCCCccccccccCCCcCCCcccC
Q 038751 538 LMLVLGFWAKFPFSIFDAKTLHSLILVYSSNNQVAASPVLQG-LFDQLTCLRALKIEDLPPTIKIPKGLENLIHLRYLKL 616 (915)
Q Consensus 538 Lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~lrv~~~~lp~-~i~~L~~Lr~L~l~~~~~~~~lP~~i~~L~~Lr~L~l 616 (915)
.+.+++.++.+|..+. ++|++|.+.++ .+..+|. .|+++++|++|+++++......|..+.++++|++|++
T Consensus 36 c~~~~~~l~~iP~~~~--~~L~~L~l~~n------~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (353)
T 2z80_A 36 CKGSSGSLNSIPSGLT--EAVKSLDLSNN------RITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDL 107 (353)
T ss_dssp EECCSTTCSSCCTTCC--TTCCEEECTTS------CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred eeCCCCCccccccccc--ccCcEEECCCC------cCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEEC
Confidence 4555566665665444 47888888877 3455554 6788888888888887766334556788888888874
Q ss_pred c-----ccCCc-CCCCCCCCccCceeecccCCccCCCCcCCCCCcCccccccceeEcCccCCCChhhHhHhhccCCCCCC
Q 038751 617 S-----MVPNG-IERLTSLRTLSEFAVARVGGKYSSKSCNLEGLRPLNHLRGFLQISGLGNVTDADEAKNAHLEKKKNLI 690 (915)
Q Consensus 617 ~-----~lP~~-i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~l~~L~ 690 (915)
+ .+|.. ++++++|++|++..+.. ..+.. ...+.++++|+
T Consensus 108 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l------------~~l~~-----------------------~~~~~~l~~L~ 152 (353)
T 2z80_A 108 SYNYLSNLSSSWFKPLSSLTFLNLLGNPY------------KTLGE-----------------------TSLFSHLTKLQ 152 (353)
T ss_dssp CSSCCSSCCHHHHTTCTTCSEEECTTCCC------------SSSCS-----------------------SCSCTTCTTCC
T ss_pred CCCcCCcCCHhHhCCCccCCEEECCCCCC------------cccCc-----------------------hhhhccCCCCc
Confidence 3 44544 56666666665432211 10000 01244556777
Q ss_pred ceEEEEecCCCCchhhhhhhhhHHHHhhHHHHHhhcCCCCCcceEEEeeeCCCCC-CCcccCccCccEEEEcCcCCCCCC
Q 038751 691 DLILIFNEREESDDEKASEEMNEEKEAKHEAVCEALRPPPDIKSLEIMVFKGRTP-SNWIGSLNKLKMLTLNSFVKCEIM 769 (915)
Q Consensus 691 ~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-p~~~~~l~~L~~L~L~~~~~~~~l 769 (915)
.|+++.|.... ......+..+++|+.|++++|..... |.++..+++|++|++++|.. ..+
T Consensus 153 ~L~l~~n~~~~------------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l-~~~ 213 (353)
T 2z80_A 153 ILRVGNMDTFT------------------KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH-ILL 213 (353)
T ss_dssp EEEEEESSSCC------------------EECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCS-TTH
T ss_pred EEECCCCcccc------------------ccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcc-ccc
Confidence 77777763111 00112445567788888887766554 67777888888888887753 333
Q ss_pred CC--CCCCCCcceeeccccccceEeCccccCCcccccccccccCCCcccccCcccceeeecCccccccccc--CCCCccc
Q 038751 770 PP--LGKLPSLEILRIWHMRSVKRVGDEFLGMEISDHIHIHGTSSSSSVIAFPKLQKLELTGMDELEEWDF--GNDDITI 845 (915)
Q Consensus 770 ~~--l~~Lp~L~~L~L~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~--~~~~~~~ 845 (915)
|. ++.+++|++|++++|. ++.++...... ....+.++.+.+.++. +..-.+ .+..+..
T Consensus 214 ~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~----------------~~~~~~l~~l~L~~~~-l~~~~l~~l~~~l~~ 275 (353)
T 2z80_A 214 LEIFVDVTSSVECLELRDTD-LDTFHFSELST----------------GETNSLIKKFTFRNVK-ITDESLFQVMKLLNQ 275 (353)
T ss_dssp HHHHHHHTTTEEEEEEESCB-CTTCCCC----------------------CCCCCCEEEEESCB-CCHHHHHHHHHHHHT
T ss_pred hhhhhhhcccccEEECCCCc-ccccccccccc----------------ccccchhhcccccccc-ccCcchhhhHHHHhc
Confidence 32 3457888888888765 33222111100 1234556666666542 211100 0112457
Q ss_pred CcccceeecccCccccCCCcCC-CCCCCcCeEeEcCCcc
Q 038751 846 MPHIKSLYITYCEKLKSLPELL-LRSTTLESLTIFGVPI 883 (915)
Q Consensus 846 lp~L~~L~l~~c~~L~~lp~~l-~~l~~L~~L~l~~c~~ 883 (915)
+++|+.|++++| ++..+|..+ ..+++|++|++++||-
T Consensus 276 l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 276 ISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNPW 313 (353)
T ss_dssp CTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCCc
Confidence 899999999998 688999875 7899999999999864
No 58
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.56 E-value=5e-14 Score=160.47 Aligned_cols=110 Identities=22% Similarity=0.230 Sum_probs=71.8
Q ss_pred cccCccCccEEEEcCcCCCCCCCCCCCCCCcceeeccccccceEeCccccCCcccccccccccCCCcccccCcccceeee
Q 038751 748 WIGSLNKLKMLTLNSFVKCEIMPPLGKLPSLEILRIWHMRSVKRVGDEFLGMEISDHIHIHGTSSSSSVIAFPKLQKLEL 827 (915)
Q Consensus 748 ~~~~l~~L~~L~L~~~~~~~~l~~l~~Lp~L~~L~L~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~f~~L~~L~l 827 (915)
.+..+++|++|+|++| .+..+|.+..+++|++|+|++|. +..++... +..+++|+.|++
T Consensus 191 ~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~-------------------~~~l~~L~~L~L 249 (452)
T 3zyi_A 191 AFEGLFNLKYLNLGMC-NIKDMPNLTPLVGLEELEMSGNH-FPEIRPGS-------------------FHGLSSLKKLWV 249 (452)
T ss_dssp TTTTCTTCCEEECTTS-CCSSCCCCTTCTTCCEEECTTSC-CSEECGGG-------------------GTTCTTCCEEEC
T ss_pred hccCCCCCCEEECCCC-cccccccccccccccEEECcCCc-CcccCccc-------------------ccCccCCCEEEe
Confidence 4556777777777777 34456777778888888887775 44443221 236677777777
Q ss_pred cCcccccccccCCCCcccCcccceeecccCccccCCCc-CCCCCCCcCeEeEcCCc
Q 038751 828 TGMDELEEWDFGNDDITIMPHIKSLYITYCEKLKSLPE-LLLRSTTLESLTIFGVP 882 (915)
Q Consensus 828 ~~~~~l~~~~~~~~~~~~lp~L~~L~l~~c~~L~~lp~-~l~~l~~L~~L~l~~c~ 882 (915)
.++. +..+. +..+..+++|+.|++++| ++..+|. .+..+++|+.|++++||
T Consensus 250 ~~n~-l~~~~--~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 250 MNSQ-VSLIE--RNAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp TTSC-CCEEC--TTTTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred CCCc-CceEC--HHHhcCCCCCCEEECCCC-cCCccChHHhccccCCCEEEccCCC
Confidence 7653 33332 222456788888888877 5667764 35667888888887765
No 59
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.55 E-value=6.7e-14 Score=158.81 Aligned_cols=110 Identities=18% Similarity=0.242 Sum_probs=66.9
Q ss_pred cccCccCccEEEEcCcCCCCCCCCCCCCCCcceeeccccccceEeCccccCCcccccccccccCCCcccccCcccceeee
Q 038751 748 WIGSLNKLKMLTLNSFVKCEIMPPLGKLPSLEILRIWHMRSVKRVGDEFLGMEISDHIHIHGTSSSSSVIAFPKLQKLEL 827 (915)
Q Consensus 748 ~~~~l~~L~~L~L~~~~~~~~l~~l~~Lp~L~~L~L~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~f~~L~~L~l 827 (915)
.+..+++|++|+|++| .+..+|.+..+++|++|+|++|. +..++... +..+++|+.|++
T Consensus 180 ~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~-------------------~~~l~~L~~L~L 238 (440)
T 3zyj_A 180 AFEGLSNLRYLNLAMC-NLREIPNLTPLIKLDELDLSGNH-LSAIRPGS-------------------FQGLMHLQKLWM 238 (440)
T ss_dssp TTTTCSSCCEEECTTS-CCSSCCCCTTCSSCCEEECTTSC-CCEECTTT-------------------TTTCTTCCEEEC
T ss_pred hhhcccccCeecCCCC-cCccccccCCCcccCEEECCCCc-cCccChhh-------------------hccCccCCEEEC
Confidence 4556677777777766 34456667777777777777764 44443221 235666777777
Q ss_pred cCcccccccccCCCCcccCcccceeecccCccccCCCc-CCCCCCCcCeEeEcCCc
Q 038751 828 TGMDELEEWDFGNDDITIMPHIKSLYITYCEKLKSLPE-LLLRSTTLESLTIFGVP 882 (915)
Q Consensus 828 ~~~~~l~~~~~~~~~~~~lp~L~~L~l~~c~~L~~lp~-~l~~l~~L~~L~l~~c~ 882 (915)
.++ .+..+. +..+..+++|+.|++++| ++..+|. .+..+++|+.|+++++|
T Consensus 239 ~~n-~l~~~~--~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 239 IQS-QIQVIE--RNAFDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp TTC-CCCEEC--TTSSTTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred CCC-ceeEEC--hhhhcCCCCCCEEECCCC-CCCccChhHhccccCCCEEEcCCCC
Confidence 665 233332 222446777777777776 5666663 34567777777777655
No 60
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.50 E-value=9.5e-15 Score=157.27 Aligned_cols=194 Identities=15% Similarity=0.066 Sum_probs=109.8
Q ss_pred cceEEEEEEccccccCccc-cCCCCceeEEEeccCCCCceecccc---chhccccCCcceeeecCCCCCccccccccCCC
Q 038751 533 EKLRHLMLVLGFWAKFPFS-IFDAKTLHSLILVYSSNNQVAASPV---LQGLFDQLTCLRALKIEDLPPTIKIPKGLENL 608 (915)
Q Consensus 533 ~~~r~Lsl~~~~~~~~~~~-~~~~~~Lr~L~l~~~~~~lrv~~~~---lp~~i~~L~~Lr~L~l~~~~~~~~lP~~i~~L 608 (915)
..+++|++.++.+..++.. +..+++|++|.+.++. +.. .|..+..+.+|++|+++++... .+|..+.++
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~------l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l 100 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNG------LSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGL 100 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC------CCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETC
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCc------cCcccCcccccccccccCEEECCCCccc-cChhhcCCC
Confidence 4566666666666554443 4566666666666552 222 2455556666666666666554 566666666
Q ss_pred cCCCcccCcc-----cCC--cCCCCCCCCccCceeecccCCccCCCCcCCCCCcCccccccceeEcCccCCCChhhHhHh
Q 038751 609 IHLRYLKLSM-----VPN--GIERLTSLRTLSEFAVARVGGKYSSKSCNLEGLRPLNHLRGFLQISGLGNVTDADEAKNA 681 (915)
Q Consensus 609 ~~Lr~L~l~~-----lP~--~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~ 681 (915)
++|++|+++. +|. .+..+++|++|++..+. .......
T Consensus 101 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~------------------------------------l~~~~~~ 144 (306)
T 2z66_A 101 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH------------------------------------TRVAFNG 144 (306)
T ss_dssp TTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSC------------------------------------CEECSTT
T ss_pred CCCCEEECCCCcccccccchhhhhccCCCEEECCCCc------------------------------------CCccchh
Confidence 6666666432 221 33444444444332111 1111122
Q ss_pred hccCCCCCCceEEEEecCCCCchhhhhhhhhHHHHhhHHHHHhhcCCCCCcceEEEeeeCCCCC-CCcccCccCccEEEE
Q 038751 682 HLEKKKNLIDLILIFNEREESDDEKASEEMNEEKEAKHEAVCEALRPPPDIKSLEIMVFKGRTP-SNWIGSLNKLKMLTL 760 (915)
Q Consensus 682 ~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-p~~~~~l~~L~~L~L 760 (915)
.+.++++|+.|++++|... ....+..+..+++|+.|++++|....+ |.++..+++|++|+|
T Consensus 145 ~~~~l~~L~~L~l~~n~l~------------------~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 206 (306)
T 2z66_A 145 IFNGLSSLEVLKMAGNSFQ------------------ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 206 (306)
T ss_dssp TTTTCTTCCEEECTTCEEG------------------GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred hcccCcCCCEEECCCCccc------------------cccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEEC
Confidence 3455666777777655311 001233455677788888877776655 667777888888888
Q ss_pred cCcCCCCCCC-CCCCCCCcceeeccccc
Q 038751 761 NSFVKCEIMP-PLGKLPSLEILRIWHMR 787 (915)
Q Consensus 761 ~~~~~~~~l~-~l~~Lp~L~~L~L~~~~ 787 (915)
++|......+ .++.+++|++|++++|.
T Consensus 207 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 234 (306)
T 2z66_A 207 SHNNFFSLDTFPYKCLNSLQVLDYSLNH 234 (306)
T ss_dssp TTSCCSBCCSGGGTTCTTCCEEECTTSC
T ss_pred CCCccCccChhhccCcccCCEeECCCCC
Confidence 8775433222 36777888888888775
No 61
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.48 E-value=3.1e-14 Score=156.56 Aligned_cols=244 Identities=17% Similarity=0.165 Sum_probs=167.0
Q ss_pred cceEEEEEEccccccCcc-ccCCCCceeEEEeccCCCCceeccccc-hhccccCCcceeeecCCCCCccccccc-cCCCc
Q 038751 533 EKLRHLMLVLGFWAKFPF-SIFDAKTLHSLILVYSSNNQVAASPVL-QGLFDQLTCLRALKIEDLPPTIKIPKG-LENLI 609 (915)
Q Consensus 533 ~~~r~Lsl~~~~~~~~~~-~~~~~~~Lr~L~l~~~~~~lrv~~~~l-p~~i~~L~~Lr~L~l~~~~~~~~lP~~-i~~L~ 609 (915)
..+++|+++++.+...+. .+..+++|++|.+.+|. +..+ |..|+++.+|++|++++|... .+|.. +++++
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~------l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~ 124 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG------INTIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLS 124 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC------CCEECTTTTTTCTTCCEEECCSSCCS-SCCHHHHTTCT
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCc------cCccCHhhcCCCCCCCEEECCCCcCC-cCCHhHhCCCc
Confidence 689999999998887555 78999999999999884 4444 567999999999999999887 77776 89999
Q ss_pred CCCcccC-----cccCC--cCCCCCCCCccCceeecccCCccCCCCcCCCCCcCccccccceeEcCccCCCChhhHhHhh
Q 038751 610 HLRYLKL-----SMVPN--GIERLTSLRTLSEFAVARVGGKYSSKSCNLEGLRPLNHLRGFLQISGLGNVTDADEAKNAH 682 (915)
Q Consensus 610 ~Lr~L~l-----~~lP~--~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~ 682 (915)
+|++|++ ..+|. .+.++++|++|++..+.... ......+.++++|+ .|.+.+. ......+..
T Consensus 125 ~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~------~~~~~~~~~l~~L~-~L~l~~n----~l~~~~~~~ 193 (353)
T 2z80_A 125 SLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFT------KIQRKDFAGLTFLE-ELEIDAS----DLQSYEPKS 193 (353)
T ss_dssp TCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCC------EECTTTTTTCCEEE-EEEEEET----TCCEECTTT
T ss_pred cCCEEECCCCCCcccCchhhhccCCCCcEEECCCCcccc------ccCHHHccCCCCCC-EEECCCC----CcCccCHHH
Confidence 9999994 55666 57889999999887653222 11122334444444 5666542 222233456
Q ss_pred ccCCCCCCceEEEEecCCCCchhhhhhhhhHHHHhhHHHHHhhcCCCCCcceEEEeeeCCCCCCC-cc---cCccCccEE
Q 038751 683 LEKKKNLIDLILIFNEREESDDEKASEEMNEEKEAKHEAVCEALRPPPDIKSLEIMVFKGRTPSN-WI---GSLNKLKML 758 (915)
Q Consensus 683 l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~-~~---~~l~~L~~L 758 (915)
+.++++|+.|+++.|.... ..... +..+++|+.|++++|....++. .+ .....++.+
T Consensus 194 l~~l~~L~~L~l~~n~l~~----------------~~~~~---~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l 254 (353)
T 2z80_A 194 LKSIQNVSHLILHMKQHIL----------------LLEIF---VDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKF 254 (353)
T ss_dssp TTTCSEEEEEEEECSCSTT----------------HHHHH---HHHTTTEEEEEEESCBCTTCCCC------CCCCCCEE
T ss_pred HhccccCCeecCCCCcccc----------------chhhh---hhhcccccEEECCCCccccccccccccccccchhhcc
Confidence 7888999999999886321 11111 2236889999999988765431 11 235567777
Q ss_pred EEcCcCCCC----CCC-CCCCCCCcceeeccccccceEeCccc-cCCcccccccccccCCCc
Q 038751 759 TLNSFVKCE----IMP-PLGKLPSLEILRIWHMRSVKRVGDEF-LGMEISDHIHIHGTSSSS 814 (915)
Q Consensus 759 ~L~~~~~~~----~l~-~l~~Lp~L~~L~L~~~~~l~~~~~~~-~~~~~l~~l~l~~~~~~~ 814 (915)
+|.++.... .+| .++.+++|++|++++|. ++.+|... .....++.+++++|....
T Consensus 255 ~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 255 TFRNVKITDESLFQVMKLLNQISGLLELEFSRNQ-LKSVPDGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp EEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ccccccccCcchhhhHHHHhcccCCCEEECCCCC-CCccCHHHHhcCCCCCEEEeeCCCccC
Confidence 776654221 122 25667788888887775 66777664 456677778887776553
No 62
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.48 E-value=9e-12 Score=138.87 Aligned_cols=323 Identities=13% Similarity=0.063 Sum_probs=196.0
Q ss_pred cCccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCC-CeEEEEEeCCCCCHHHHHHH
Q 038751 170 VSDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENF-DKRIWVCVSDPFDEFRIAKA 248 (915)
Q Consensus 170 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~vs~~~~~~~~~~~ 248 (915)
+..++||+.+++++.+++.....+..+..+.+.|+|++|+||||||+.+++. ..... ...+|++++...+...++..
T Consensus 16 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~ 93 (389)
T 1fnn_A 16 PKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWEL--YKDKTTARFVYINGFIYRNFTAIIGE 93 (389)
T ss_dssp CSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHH--HTTSCCCEEEEEETTTCCSHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHH--HhhhcCeeEEEEeCccCCCHHHHHHH
Confidence 3679999999999999987532211223348999999999999999999874 32221 24678887788888899999
Q ss_pred HHHHhhCCCCC-cccHHHHHHHHHHHhc--cCeEEEEEeCCCCCCccChhhhHHhhhcCC----CCceEEEEcCchHHHh
Q 038751 249 IIEGLEGSLPN-LRELNSLLEYIHTSIK--EKKFFLILDDVWPDDYSKWEPFHNCLMNGL----CGSRILVTTRKETVAR 321 (915)
Q Consensus 249 i~~~l~~~~~~-~~~~~~~~~~l~~~l~--~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~----~gs~iivTtR~~~v~~ 321 (915)
++..++...+. ......+...+...+. +++.+||+||++..+......+...+.... .+..||++|+......
T Consensus 94 l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~ 173 (389)
T 1fnn_A 94 IARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLN 173 (389)
T ss_dssp HHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHH
T ss_pred HHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHH
Confidence 99988654322 2245556666666553 568899999997654444555554443211 4677888887664433
Q ss_pred hhc-------CcCeEeCCCCCHHHHHHHHHHhHcCCC-CCCchhHHHHHHHHHHHhc---------CCCchHHHHHHhHh
Q 038751 322 MME-------STDVISIKELSEQECWSLFKRFAFSGR-SPTECEQLEEIGRKIVGKC---------KGLPLAAKTIGSLL 384 (915)
Q Consensus 322 ~~~-------~~~~~~l~~L~~~~~~~lf~~~~~~~~-~~~~~~~l~~~~~~i~~~c---------~G~PLai~~~~~~l 384 (915)
.+. ....+.+.+++.++..+++...+.... ..... .+..+.|++.+ +|.|..+..+....
T Consensus 174 ~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a 250 (389)
T 1fnn_A 174 NLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYS---EDILQMIADITGAQTPLDTNRGDARLAIDILYRS 250 (389)
T ss_dssp TSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSC---HHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHH
T ss_pred HhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCC---HHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHH
Confidence 221 123799999999999999988753200 01111 24556778888 78876554443322
Q ss_pred h------cC--CCHHHHHHHHhhhccccccccccchHHHHHhhcCCChHhhhHHhHhccCC---CCcccChHHHHHHHHH
Q 038751 385 R------FK--KTREEWHIILNSEMWQLEEFERGLLAPLLLSYNDLPSAIKRCFLYCAVFP---KDYNLDKDELVKLWMA 453 (915)
Q Consensus 385 ~------~~--~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~~~s~fp---~~~~i~~~~Li~~W~a 453 (915)
. .. -+.+.......... ...+.-.+..||.+.+.++..++.+. .+-.+....+...+..
T Consensus 251 ~~~a~~~~~~~i~~~~v~~~~~~~~----------~~~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~ 320 (389)
T 1fnn_A 251 AYAAQQNGRKHIAPEDVRKSSKEVL----------FGISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKI 320 (389)
T ss_dssp HHHHHHTTCSSCCHHHHHHHHHHHS----------CCCCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHH
T ss_pred HHHHHHhCCCCcCHHHHHHHHHHHh----------hhhHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHH
Confidence 1 11 12233322222110 11123346678888888888777654 2224566666665533
Q ss_pred ----cCCcccCCCccHHHHHHHHHHHHHHccccccccc--CC---CCeeEEE----echHHHHHHHHHhhhh
Q 038751 454 ----QGYIEQKGNIEMEMTGEWYFDFLATRSFFQEFDE--EK---EGTVRCK----MHDIVHDFAQYLTRKE 512 (915)
Q Consensus 454 ----eg~i~~~~~~~~e~~~~~~l~~L~~~sll~~~~~--~~---~~~~~~~----mHdlv~d~a~~~~~~e 512 (915)
.|... .+ ......++++|...++|..... +. |+...++ .|+++..+...+..+|
T Consensus 321 ~~~~~~~~~----~~-~~~~~~~l~~L~~~gli~~~~~~~~~g~~g~~~~~~l~~~~~~v~~~~~~~~~~~~ 387 (389)
T 1fnn_A 321 VCEEYGERP----RV-HSQLWSYLNDLREKGIVETRQNKRGEGVRGRTTLISIGTEPLDTLEAVITKLIKEE 387 (389)
T ss_dssp HHHHTTCCC----CC-HHHHHHHHHHHHHTTSSEEEEC---------CEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCC----CC-HHHHHHHHHHHHhCCCeEEeeeccCCCCCCceeEEEeCCCHHHHHHHHHHHHHHHh
Confidence 22111 11 3456678999999999998654 11 3333333 4566666665555443
No 63
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.48 E-value=4.7e-12 Score=140.88 Aligned_cols=297 Identities=11% Similarity=0.012 Sum_probs=180.6
Q ss_pred cCccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccc----cC--CCeEEEEEeCCCC-CH
Q 038751 170 VSDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVI----EN--FDKRIWVCVSDPF-DE 242 (915)
Q Consensus 170 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~--F~~~~wv~vs~~~-~~ 242 (915)
+..++||+++++++.+++..... ....+.+.|+|++|+||||||+.+++...-. .. ....+|++++... +.
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~--~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 96 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVK--NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTP 96 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHT--TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCH
T ss_pred CCCCCChHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCH
Confidence 36799999999999988865322 2245689999999999999999998842111 11 2356788877766 88
Q ss_pred HHHHHHHHHHhhCCCCC--cccHHHHHHHHHHHhccCeEEEEEeCCCCCCccChhhh-HHhhhcCCCCceEEEEcCchHH
Q 038751 243 FRIAKAIIEGLEGSLPN--LRELNSLLEYIHTSIKEKKFFLILDDVWPDDYSKWEPF-HNCLMNGLCGSRILVTTRKETV 319 (915)
Q Consensus 243 ~~~~~~i~~~l~~~~~~--~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l-~~~l~~~~~gs~iivTtR~~~v 319 (915)
..++..++.++.+.... ......+...+.+.+..++.+||+||++.-....+... ...+.....+..||+||+....
T Consensus 97 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~~ 176 (384)
T 2qby_B 97 QAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDINV 176 (384)
T ss_dssp HHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTTT
T ss_pred HHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCch
Confidence 88999999888543221 22345566777777776666999999965322221222 3333332267789999986532
Q ss_pred Hh----hh--cCcCeEeCCCCCHHHHHHHHHHhHcC-CCCCCchhHHHHHHHHHHHhcC---CCch-HHHHHHhHh--h-
Q 038751 320 AR----MM--ESTDVISIKELSEQECWSLFKRFAFS-GRSPTECEQLEEIGRKIVGKCK---GLPL-AAKTIGSLL--R- 385 (915)
Q Consensus 320 ~~----~~--~~~~~~~l~~L~~~~~~~lf~~~~~~-~~~~~~~~~l~~~~~~i~~~c~---G~PL-ai~~~~~~l--~- 385 (915)
.. .+ .....+.+++++.++..++|..++.. -......+ +..+.|++.++ |.|. |+..+-.+. .
T Consensus 177 ~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~ 253 (384)
T 2qby_B 177 RDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDD---EILSYIAAISAKEHGDARKAVNLLFRAAQLAS 253 (384)
T ss_dssp TTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCS---HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT
T ss_pred HhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCH---HHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc
Confidence 11 11 11248999999999999999987531 11111112 33455666676 8887 333332222 1
Q ss_pred c--CCCHHHHHHHHhhhccccccccccchHHHHHhhcCCChHhhhHHhHhccCCCCcccChHHHHHHHHHcCCcccCCCc
Q 038751 386 F--KKTREEWHIILNSEMWQLEEFERGLLAPLLLSYNDLPSAIKRCFLYCAVFPKDYNLDKDELVKLWMAQGYIEQKGNI 463 (915)
Q Consensus 386 ~--~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~~~s~fp~~~~i~~~~Li~~W~aeg~i~~~~~~ 463 (915)
. .-+.+++..+++... ...+.-+++.|+++.+..+..++....+-.+. +.....--..| +.+ .
T Consensus 254 ~~~~i~~~~v~~~~~~~~----------~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~-~~~~~~~~~~g-~~~---~ 318 (384)
T 2qby_B 254 GGGIIRKEHVDKAIVDYE----------QERLIEAVKALPFHYKLALRSLIESEDVMSAH-KMYTDLCNKFK-QKP---L 318 (384)
T ss_dssp SSSCCCHHHHHHHHHHHH----------HHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHH-HHHHHHHHHTT-CCC---C
T ss_pred CCCccCHHHHHHHHHHHh----------cchHHHHHHcCCHHHHHHHHHHHHhcccChHH-HHHHHHHHHcC-CCC---C
Confidence 1 125666666654321 13456678899998888877777611101111 11111111223 111 1
Q ss_pred cHHHHHHHHHHHHHHccccccccc
Q 038751 464 EMEMTGEWYFDFLATRSFFQEFDE 487 (915)
Q Consensus 464 ~~e~~~~~~l~~L~~~sll~~~~~ 487 (915)
.......++..|...|++.....
T Consensus 319 -~~~~~~~~l~~L~~~gli~~~~~ 341 (384)
T 2qby_B 319 -SYRRFSDIISELDMFGIVKIRII 341 (384)
T ss_dssp -CHHHHHHHHHHHHHTTSEEEEEE
T ss_pred -CHHHHHHHHHHHHhCCCEEEEec
Confidence 23556778999999999987543
No 64
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.47 E-value=8e-13 Score=154.65 Aligned_cols=252 Identities=17% Similarity=0.136 Sum_probs=148.1
Q ss_pred CceeEEEeccCCCCceeccccchhccccCCcceeeecCCCCCccccccccCCCcCCCcccCc-----ccCCcCCCCCCCC
Q 038751 556 KTLHSLILVYSSNNQVAASPVLQGLFDQLTCLRALKIEDLPPTIKIPKGLENLIHLRYLKLS-----MVPNGIERLTSLR 630 (915)
Q Consensus 556 ~~Lr~L~l~~~~~~lrv~~~~lp~~i~~L~~Lr~L~l~~~~~~~~lP~~i~~L~~Lr~L~l~-----~lP~~i~~L~~L~ 630 (915)
.++++|.+.++ .+..+|..+. .+|++|++++|... .+|. .+.+|++|+++ .+|. .+++|+
T Consensus 40 ~~l~~L~ls~n------~L~~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~ 104 (622)
T 3g06_A 40 NGNAVLNVGES------GLTTLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTSLPV---LPPGLL 104 (622)
T ss_dssp HCCCEEECCSS------CCSCCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSCCCC---CCTTCC
T ss_pred CCCcEEEecCC------CcCccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCC
Confidence 35889999887 5677888776 89999999999877 7887 57888888844 4554 556677
Q ss_pred ccCceeecccCCccCCCCcCCCCCcCccccccceeEcCccCCCChhhHhHhhccCCCCCCceEEEEecCCCCchhhhhhh
Q 038751 631 TLSEFAVARVGGKYSSKSCNLEGLRPLNHLRGFLQISGLGNVTDADEAKNAHLEKKKNLIDLILIFNEREESDDEKASEE 710 (915)
Q Consensus 631 ~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~ 710 (915)
+|++..+.... +.. .+.+|+.|+++.|....
T Consensus 105 ~L~Ls~N~l~~---------l~~-------------------------------~l~~L~~L~L~~N~l~~--------- 135 (622)
T 3g06_A 105 ELSIFSNPLTH---------LPA-------------------------------LPSGLCKLWIFGNQLTS--------- 135 (622)
T ss_dssp EEEECSCCCCC---------CCC-------------------------------CCTTCCEEECCSSCCSC---------
T ss_pred EEECcCCcCCC---------CCC-------------------------------CCCCcCEEECCCCCCCc---------
Confidence 77654332211 000 12234444444332110
Q ss_pred hhHHHHhhHHHHHhhcCCCCCcceEEEeeeCCCCCCCcccCccCccEEEEcCcCCCCCCCCCCCCCCcceeeccccccce
Q 038751 711 MNEEKEAKHEAVCEALRPPPDIKSLEIMVFKGRTPSNWIGSLNKLKMLTLNSFVKCEIMPPLGKLPSLEILRIWHMRSVK 790 (915)
Q Consensus 711 ~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~Lp~L~~L~L~~~~~l~ 790 (915)
++ ..+++|+.|++++|....+|. .+++|+.|++++|. +..+| ..+++|++|++++|. ++
T Consensus 136 -----------lp---~~l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N~-l~~l~--~~~~~L~~L~Ls~N~-l~ 194 (622)
T 3g06_A 136 -----------LP---VLPPGLQELSVSDNQLASLPA---LPSELCKLWAYNNQ-LTSLP--MLPSGLQELSVSDNQ-LA 194 (622)
T ss_dssp -----------CC---CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-CSCCC--CCCTTCCEEECCSSC-CS
T ss_pred -----------CC---CCCCCCCEEECcCCcCCCcCC---ccCCCCEEECCCCC-CCCCc--ccCCCCcEEECCCCC-CC
Confidence 00 012445555555554444443 23445555555442 22233 334555555555543 33
Q ss_pred EeCccccCCcccccccccccCCCcccccCcccceeeecCcccccccccCCCCcccCcccceeecccCccccCCCcCCCCC
Q 038751 791 RVGDEFLGMEISDHIHIHGTSSSSSVIAFPKLQKLELTGMDELEEWDFGNDDITIMPHIKSLYITYCEKLKSLPELLLRS 870 (915)
Q Consensus 791 ~~~~~~~~~~~l~~l~l~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~lp~L~~L~l~~c~~L~~lp~~l~~l 870 (915)
.++.. ...++.|++++|.+......+++|+.|+++++ .+..++ ..+++|+.|++++| ++..+|. .+
T Consensus 195 ~l~~~---~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N-~L~~lp------~~l~~L~~L~Ls~N-~L~~lp~---~~ 260 (622)
T 3g06_A 195 SLPTL---PSELYKLWAYNNRLTSLPALPSGLKELIVSGN-RLTSLP------VLPSELKELMVSGN-RLTSLPM---LP 260 (622)
T ss_dssp CCCCC---CTTCCEEECCSSCCSSCCCCCTTCCEEECCSS-CCSCCC------CCCTTCCEEECCSS-CCSCCCC---CC
T ss_pred CCCCc---cchhhEEECcCCcccccCCCCCCCCEEEccCC-ccCcCC------CCCCcCcEEECCCC-CCCcCCc---cc
Confidence 33322 23444555555544433345789999999987 455554 26799999999998 7889998 57
Q ss_pred CCcCeEeEcCCcchhHhhccCCCCCcccccCCCcceeccccc
Q 038751 871 TTLESLTIFGVPIVQESFKRRTEKDWSKISHIPNIKIQNIVF 912 (915)
Q Consensus 871 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~ip~v~~~~~~~ 912 (915)
++|+.|++++|.. .. ..+.+....++..+.+.+|.+
T Consensus 261 ~~L~~L~Ls~N~L-~~-----lp~~l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 261 SGLLSLSVYRNQL-TR-----LPESLIHLSSETTVNLEGNPL 296 (622)
T ss_dssp TTCCEEECCSSCC-CS-----CCGGGGGSCTTCEEECCSCCC
T ss_pred ccCcEEeCCCCCC-Cc-----CCHHHhhccccCEEEecCCCC
Confidence 8999999999954 21 112234445555566666654
No 65
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.47 E-value=9.5e-14 Score=165.76 Aligned_cols=150 Identities=13% Similarity=0.091 Sum_probs=100.9
Q ss_pred CCCcceEEEeeeCCCCC--CCcccCccCccEEEEcCcCCCCCCC-CCCCCCCcceeeccccccce-EeCccccCCccccc
Q 038751 729 PPDIKSLEIMVFKGRTP--SNWIGSLNKLKMLTLNSFVKCEIMP-PLGKLPSLEILRIWHMRSVK-RVGDEFLGMEISDH 804 (915)
Q Consensus 729 ~~~L~~L~l~~~~~~~~--p~~~~~l~~L~~L~L~~~~~~~~l~-~l~~Lp~L~~L~L~~~~~l~-~~~~~~~~~~~l~~ 804 (915)
+++|+.+++.++..... +..+..+++|+.++++.|......+ .+..+++|++|++++|.... ..+..+.....++.
T Consensus 419 l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~ 498 (635)
T 4g8a_A 419 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 498 (635)
T ss_dssp CTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCE
T ss_pred cccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCE
Confidence 44555555544332221 2234466777777777665333333 35678889999998886444 35666677788999
Q ss_pred ccccccCCCc----ccccCcccceeeecCcccccccccCCCCcccCcccceeecccCccccCC-CcCCCCC-CCcCeEeE
Q 038751 805 IHIHGTSSSS----SVIAFPKLQKLELTGMDELEEWDFGNDDITIMPHIKSLYITYCEKLKSL-PELLLRS-TTLESLTI 878 (915)
Q Consensus 805 l~l~~~~~~~----~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~lp~L~~L~l~~c~~L~~l-p~~l~~l-~~L~~L~l 878 (915)
|++++|.+.. .+..+++|+.|+++++ ++..+. +..+..+++|+.|++++|. +..+ |..+.++ ++|+.|++
T Consensus 499 L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N-~l~~l~--~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~l~~~L~~L~L 574 (635)
T 4g8a_A 499 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHN-NFFSLD--TFPYKCLNSLQVLDYSLNH-IMTSKKQELQHFPSSLAFLNL 574 (635)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCBCC--CGGGTTCTTCCEEECTTSC-CCBCCSSCTTCCCTTCCEEEC
T ss_pred EECCCCccCCcChHHHcCCCCCCEEECCCC-cCCCCC--hhHHhCCCCCCEEECCCCc-CCCCCHHHHHhhhCcCCEEEe
Confidence 9999886533 4567889999999886 354443 2235578999999999984 5555 5677777 68999999
Q ss_pred cCCc
Q 038751 879 FGVP 882 (915)
Q Consensus 879 ~~c~ 882 (915)
+++|
T Consensus 575 ~~Np 578 (635)
T 4g8a_A 575 TQND 578 (635)
T ss_dssp TTCC
T ss_pred eCCC
Confidence 8754
No 66
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.46 E-value=3.7e-16 Score=178.90 Aligned_cols=81 Identities=16% Similarity=0.261 Sum_probs=47.3
Q ss_pred ccccccccccCCCcc--------cccCcccceeeecCcccccccccCC--CCcc-cCcccceeecccCcccc-----CCC
Q 038751 801 ISDHIHIHGTSSSSS--------VIAFPKLQKLELTGMDELEEWDFGN--DDIT-IMPHIKSLYITYCEKLK-----SLP 864 (915)
Q Consensus 801 ~l~~l~l~~~~~~~~--------~~~f~~L~~L~l~~~~~l~~~~~~~--~~~~-~lp~L~~L~l~~c~~L~-----~lp 864 (915)
.++.|++++|..... +..+++|+.|+++++ .+....... ..+. ..++|+.|++++| .+. .+|
T Consensus 314 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~ 391 (461)
T 1z7x_W 314 QLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLA 391 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHH
T ss_pred cceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCC-CCChhhHHHHH
Confidence 455556655544321 223466666666665 232211000 0000 2568888888888 455 577
Q ss_pred cCCCCCCCcCeEeEcCCcc
Q 038751 865 ELLLRSTTLESLTIFGVPI 883 (915)
Q Consensus 865 ~~l~~l~~L~~L~l~~c~~ 883 (915)
..+..+++|++|++++|+.
T Consensus 392 ~~l~~~~~L~~L~l~~N~i 410 (461)
T 1z7x_W 392 ATLLANHSLRELDLSNNCL 410 (461)
T ss_dssp HHHHHCCCCCEEECCSSSC
T ss_pred HHHHhCCCccEEECCCCCC
Confidence 7777788899999988864
No 67
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.44 E-value=5e-14 Score=151.59 Aligned_cols=196 Identities=19% Similarity=0.105 Sum_probs=141.9
Q ss_pred cccceEEEEEEccccccC---ccccCCCCceeEEEeccCCCCceeccccchhccccCCcceeeecCCCCCccccc--ccc
Q 038751 531 CQEKLRHLMLVLGFWAKF---PFSIFDAKTLHSLILVYSSNNQVAASPVLQGLFDQLTCLRALKIEDLPPTIKIP--KGL 605 (915)
Q Consensus 531 ~~~~~r~Lsl~~~~~~~~---~~~~~~~~~Lr~L~l~~~~~~lrv~~~~lp~~i~~L~~Lr~L~l~~~~~~~~lP--~~i 605 (915)
....+++|++.+|.+... +..+..+++|++|.+.++ .+..+|..+..+.+|++|+++++... .+| ..+
T Consensus 50 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n------~i~~l~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~ 122 (306)
T 2z66_A 50 KLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN------GVITMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVF 122 (306)
T ss_dssp TCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC------SEEEEEEEEETCTTCCEEECTTSEEE-SSTTTTTT
T ss_pred ccccCCEEECCCCccCcccCcccccccccccCEEECCCC------ccccChhhcCCCCCCCEEECCCCccc-ccccchhh
Confidence 346899999999987643 456677999999999998 46678888999999999999998776 555 478
Q ss_pred CCCcCCCcccCcc------cCCcCCCCCCCCccCceeecccCCccCCCCcCCCCCcCccccccceeEcCccCCCChhhHh
Q 038751 606 ENLIHLRYLKLSM------VPNGIERLTSLRTLSEFAVARVGGKYSSKSCNLEGLRPLNHLRGFLQISGLGNVTDADEAK 679 (915)
Q Consensus 606 ~~L~~Lr~L~l~~------lP~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~ 679 (915)
.++++|++|+++. .|..+..+++|++|++..+.... ...
T Consensus 123 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-----------------------------------~~~ 167 (306)
T 2z66_A 123 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE-----------------------------------NFL 167 (306)
T ss_dssp TTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGG-----------------------------------GEE
T ss_pred hhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccc-----------------------------------ccc
Confidence 9999999999654 23446667777777654322110 011
Q ss_pred HhhccCCCCCCceEEEEecCCCCchhhhhhhhhHHHHhhHHHHHhhcCCCCCcceEEEeeeCCCCCCC-cccCccCccEE
Q 038751 680 NAHLEKKKNLIDLILIFNEREESDDEKASEEMNEEKEAKHEAVCEALRPPPDIKSLEIMVFKGRTPSN-WIGSLNKLKML 758 (915)
Q Consensus 680 ~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~-~~~~l~~L~~L 758 (915)
+..+..+++|+.|++++|.... ..+..+..+++|+.|++++|....+|. .+..+++|+.|
T Consensus 168 ~~~~~~l~~L~~L~Ls~n~l~~-------------------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 228 (306)
T 2z66_A 168 PDIFTELRNLTFLDLSQCQLEQ-------------------LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL 228 (306)
T ss_dssp CSCCTTCTTCCEEECTTSCCCE-------------------ECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEE
T ss_pred hhHHhhCcCCCEEECCCCCcCC-------------------cCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEe
Confidence 2234556677777777664321 112345667889999999988777654 67789999999
Q ss_pred EEcCcCCCCCCC-CCCCCC-Ccceeeccccc
Q 038751 759 TLNSFVKCEIMP-PLGKLP-SLEILRIWHMR 787 (915)
Q Consensus 759 ~L~~~~~~~~l~-~l~~Lp-~L~~L~L~~~~ 787 (915)
+|++|......| .++.+| +|++|++++|+
T Consensus 229 ~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 229 DYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp ECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred ECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 999997555444 477785 89999999887
No 68
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.44 E-value=3.5e-14 Score=151.09 Aligned_cols=189 Identities=16% Similarity=0.050 Sum_probs=106.1
Q ss_pred EEEEEEccccccCccccCCCCceeEEEeccCCCCceeccccch-hccccCCcceeeecCCCCCccccccccCCCcCCCcc
Q 038751 536 RHLMLVLGFWAKFPFSIFDAKTLHSLILVYSSNNQVAASPVLQ-GLFDQLTCLRALKIEDLPPTIKIPKGLENLIHLRYL 614 (915)
Q Consensus 536 r~Lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~lrv~~~~lp-~~i~~L~~Lr~L~l~~~~~~~~lP~~i~~L~~Lr~L 614 (915)
+.++..++.+..+|..+ .++|+.|.+.++ .+..+| ..|+++.+|++|+++++......|..+.++++|++|
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n------~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 85 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGN------RISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQL 85 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTS------CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeCC------cCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEE
Confidence 45666666666555433 468888888887 345555 568888888888888887763446677778888887
Q ss_pred cCccc-------CCcCCCCCCCCccCceeecccCCccCCCCcCCCCCcCccccccceeEcCccCCCChhhHhHhhccCCC
Q 038751 615 KLSMV-------PNGIERLTSLRTLSEFAVARVGGKYSSKSCNLEGLRPLNHLRGFLQISGLGNVTDADEAKNAHLEKKK 687 (915)
Q Consensus 615 ~l~~l-------P~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~l~ 687 (915)
+++.. |..+..+++|++|++..+... ...+..+.+++
T Consensus 86 ~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~------------------------------------~~~~~~~~~l~ 129 (285)
T 1ozn_A 86 DLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ------------------------------------ELGPGLFRGLA 129 (285)
T ss_dssp ECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCC------------------------------------CCCTTTTTTCT
T ss_pred eCCCCCCccccCHHHhcCCcCCCEEECCCCcCC------------------------------------EECHhHhhCCc
Confidence 75542 223444444444443221110 01112244455
Q ss_pred CCCceEEEEecCCCCchhhhhhhhhHHHHhhHHHHHhhcCCCCCcceEEEeeeCCCCCCC-cccCccCccEEEEcCcCCC
Q 038751 688 NLIDLILIFNEREESDDEKASEEMNEEKEAKHEAVCEALRPPPDIKSLEIMVFKGRTPSN-WIGSLNKLKMLTLNSFVKC 766 (915)
Q Consensus 688 ~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~-~~~~l~~L~~L~L~~~~~~ 766 (915)
+|+.|+++.|.... .....+..+++|+.|++++|....+|. ++..+++|+.|+|++|...
T Consensus 130 ~L~~L~l~~n~l~~-------------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 190 (285)
T 1ozn_A 130 ALQYLYLQDNALQA-------------------LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 190 (285)
T ss_dssp TCCEEECCSSCCCC-------------------CCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCEEECCCCcccc-------------------cCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccc
Confidence 56666665553221 001123445666666666665554443 3556666666666666433
Q ss_pred CC-CCCCCCCCCcceeeccccc
Q 038751 767 EI-MPPLGKLPSLEILRIWHMR 787 (915)
Q Consensus 767 ~~-l~~l~~Lp~L~~L~L~~~~ 787 (915)
.. ...++.+++|++|++++|.
T Consensus 191 ~~~~~~~~~l~~L~~L~l~~n~ 212 (285)
T 1ozn_A 191 HVHPHAFRDLGRLMTLYLFANN 212 (285)
T ss_dssp EECTTTTTTCTTCCEEECCSSC
T ss_pred ccCHhHccCcccccEeeCCCCc
Confidence 33 2235566666666666654
No 69
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.44 E-value=1.2e-11 Score=137.66 Aligned_cols=296 Identities=13% Similarity=0.020 Sum_probs=179.8
Q ss_pred cCccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccc----cCCCeEEEEEeCCCCCHHHH
Q 038751 170 VSDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVI----ENFDKRIWVCVSDPFDEFRI 245 (915)
Q Consensus 170 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~~ 245 (915)
+..++||+.+++++.+++..... ....+.+.|+|++|+||||+|+.+++..... +.-...+|+++....+...+
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~--~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 95 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALR--GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRV 95 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTS--SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHH
Confidence 46799999999999998854311 2245678999999999999999998742111 00124678888888888999
Q ss_pred HHHHHHHhhCCCCC-cccHHHHHHHHHHHh--ccCeEEEEEeCCCCCCcc--ChhhhHHhhhcC-----CCCceEEEEcC
Q 038751 246 AKAIIEGLEGSLPN-LRELNSLLEYIHTSI--KEKKFFLILDDVWPDDYS--KWEPFHNCLMNG-----LCGSRILVTTR 315 (915)
Q Consensus 246 ~~~i~~~l~~~~~~-~~~~~~~~~~l~~~l--~~k~~LlVlDdvw~~~~~--~~~~l~~~l~~~-----~~gs~iivTtR 315 (915)
+..++.+++...+. ......+...+...+ .+++.+||+||++.-... ..+.+...+... ..+..+|.||+
T Consensus 96 ~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~ 175 (387)
T 2v1u_A 96 ASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITN 175 (387)
T ss_dssp HHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECS
T ss_pred HHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEEC
Confidence 99999998654332 223555666666666 356899999999643221 223333333221 34567888887
Q ss_pred chHHHhh-----hcC-c-CeEeCCCCCHHHHHHHHHHhHc---CCCCCCchhHHHHHHHHHHHhcC---CCchHHH-HHH
Q 038751 316 KETVARM-----MES-T-DVISIKELSEQECWSLFKRFAF---SGRSPTECEQLEEIGRKIVGKCK---GLPLAAK-TIG 381 (915)
Q Consensus 316 ~~~v~~~-----~~~-~-~~~~l~~L~~~~~~~lf~~~~~---~~~~~~~~~~l~~~~~~i~~~c~---G~PLai~-~~~ 381 (915)
....... ... . ..+.+.+++.++..+++...+. ... ...+ +..+.+++.++ |.|..+. .+.
T Consensus 176 ~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~--~~~~---~~~~~l~~~~~~~~G~~r~~~~~l~ 250 (387)
T 2v1u_A 176 SLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPG--VLDP---DVVPLCAALAAREHGDARRALDLLR 250 (387)
T ss_dssp CSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTT--TBCS---SHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred CCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCC--CCCH---HHHHHHHHHHHHhccCHHHHHHHHH
Confidence 6532111 111 2 4789999999999999988743 221 1112 23455667777 9994433 222
Q ss_pred hHhh-----cC--CCHHHHHHHHhhhccccccccccchHHHHHhhcCCChHhhhHHhHhc-cCCCCcccChHHHHHHH--
Q 038751 382 SLLR-----FK--KTREEWHIILNSEMWQLEEFERGLLAPLLLSYNDLPSAIKRCFLYCA-VFPKDYNLDKDELVKLW-- 451 (915)
Q Consensus 382 ~~l~-----~~--~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~~~s-~fp~~~~i~~~~Li~~W-- 451 (915)
.+.. .. -+.+++...+.... ...+.-++..|+++.+..+..++ ++...-.+....+.+..
T Consensus 251 ~a~~~a~~~~~~~i~~~~v~~a~~~~~----------~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~ 320 (387)
T 2v1u_A 251 VAGEIAERRREERVRREHVYSARAEIE----------RDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKE 320 (387)
T ss_dssp HHHHHHHHTTCSCBCHHHHHHHHHHHH----------HHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCcCHHHHHHHHHHHh----------hchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHH
Confidence 2211 11 14556655544321 12355677899998888777666 44322244445443432
Q ss_pred --HHcCCcccCCCccHHHHHHHHHHHHHHccccccccc
Q 038751 452 --MAQGYIEQKGNIEMEMTGEWYFDFLATRSFFQEFDE 487 (915)
Q Consensus 452 --~aeg~i~~~~~~~~e~~~~~~l~~L~~~sll~~~~~ 487 (915)
-..| +. .........+++.|...|++.....
T Consensus 321 ~~~~~~-~~----~~~~~~~~~~l~~L~~~gli~~~~~ 353 (387)
T 2v1u_A 321 LTSTLG-LE----HVTLRRVSGIISELDMLGIVKSRVV 353 (387)
T ss_dssp HHHHTT-CC----CCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHhcC-CC----CCCHHHHHHHHHHHHhCCCeEEEee
Confidence 1223 11 1124566788999999999988543
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.44 E-value=1.1e-13 Score=158.53 Aligned_cols=55 Identities=24% Similarity=0.181 Sum_probs=31.5
Q ss_pred CCceeEEEeccCCCCceeccccc-hhccccCCcceeeecCCCCCccccccccCCCcCCCcccCc
Q 038751 555 AKTLHSLILVYSSNNQVAASPVL-QGLFDQLTCLRALKIEDLPPTIKIPKGLENLIHLRYLKLS 617 (915)
Q Consensus 555 ~~~Lr~L~l~~~~~~lrv~~~~l-p~~i~~L~~Lr~L~l~~~~~~~~lP~~i~~L~~Lr~L~l~ 617 (915)
+++|++|.+.+|. +..+ |..|+++++|++|+|++|... .+|. ++++++|++|+++
T Consensus 33 ~~~L~~L~Ls~n~------l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~-l~~l~~L~~L~Ls 88 (487)
T 3oja_A 33 AWNVKELDLSGNP------LSQISAADLAPFTKLELLNLSSNVLY-ETLD-LESLSTLRTLDLN 88 (487)
T ss_dssp GGGCCEEECCSSC------CCCCCGGGGTTCTTCCEEECTTSCCE-EEEE-CTTCTTCCEEECC
T ss_pred CCCccEEEeeCCc------CCCCCHHHHhCCCCCCEEEeeCCCCC-CCcc-cccCCCCCEEEec
Confidence 3467777776663 3333 456667777777777666654 2222 5555566655544
No 71
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.43 E-value=3.1e-13 Score=153.29 Aligned_cols=68 Identities=16% Similarity=0.086 Sum_probs=40.9
Q ss_pred cCCCCCcceEEEeeeCCCCC-CCcccCccCccEEEEcCcCCCCCCC-CCCCCCCcceeeccccccceEeCc
Q 038751 726 LRPPPDIKSLEIMVFKGRTP-SNWIGSLNKLKMLTLNSFVKCEIMP-PLGKLPSLEILRIWHMRSVKRVGD 794 (915)
Q Consensus 726 l~~~~~L~~L~l~~~~~~~~-p~~~~~l~~L~~L~L~~~~~~~~l~-~l~~Lp~L~~L~L~~~~~l~~~~~ 794 (915)
+..+++|+.|++++|....+ |..+..+++|++|+|++|......+ .++.+++|++|+|++|. ++.++.
T Consensus 203 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~ 272 (440)
T 3zyj_A 203 LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNN-LTLLPH 272 (440)
T ss_dssp CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSC-CCCCCT
T ss_pred cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCC-CCccCh
Confidence 45566677777776665544 5556667777777777664333222 35666777777776664 444443
No 72
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.43 E-value=6.8e-15 Score=159.10 Aligned_cols=271 Identities=14% Similarity=0.058 Sum_probs=144.8
Q ss_pred cCCCCceeEEEeccCCCCceeccccc-hhccccCCcceeeecCCCCCccccccccCCCcCCCcccCcccC-CcCCCCCCC
Q 038751 552 IFDAKTLHSLILVYSSNNQVAASPVL-QGLFDQLTCLRALKIEDLPPTIKIPKGLENLIHLRYLKLSMVP-NGIERLTSL 629 (915)
Q Consensus 552 ~~~~~~Lr~L~l~~~~~~lrv~~~~l-p~~i~~L~~Lr~L~l~~~~~~~~lP~~i~~L~~Lr~L~l~~lP-~~i~~L~~L 629 (915)
+..+++|++|.+.++. +..+ |..|+++++|++|++++|... .+|. +.++++|++|+++... .++...++|
T Consensus 30 ~~~~~~L~~L~L~~n~------l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~-~~~l~~L~~L~Ls~n~l~~l~~~~~L 101 (317)
T 3o53_A 30 RQSAWNVKELDLSGNP------LSQISAADLAPFTKLELLNLSSNVLY-ETLD-LESLSTLRTLDLNNNYVQELLVGPSI 101 (317)
T ss_dssp HTTGGGCSEEECTTSC------CCCCCHHHHTTCTTCCEEECTTSCCE-EEEE-ETTCTTCCEEECCSSEEEEEEECTTC
T ss_pred hccCCCCCEEECcCCc------cCcCCHHHhhCCCcCCEEECCCCcCC-cchh-hhhcCCCCEEECcCCccccccCCCCc
Confidence 3456678888887773 3333 467788888888888887765 3443 7778888888755432 122334666
Q ss_pred CccCceeecccCCccCCCCcCCCCCcCccccccceeEcCccCCCChhhHhHhhccCCCCCCceEEEEecCCCCchhhhhh
Q 038751 630 RTLSEFAVARVGGKYSSKSCNLEGLRPLNHLRGFLQISGLGNVTDADEAKNAHLEKKKNLIDLILIFNEREESDDEKASE 709 (915)
Q Consensus 630 ~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~ 709 (915)
++|++..+.... .....+.+|+ .|.+.+ +.........+..+++|+.|++++|.....
T Consensus 102 ~~L~l~~n~l~~-------~~~~~~~~L~----~L~l~~----N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~------- 159 (317)
T 3o53_A 102 ETLHAANNNISR-------VSCSRGQGKK----NIYLAN----NKITMLRDLDEGCRSRVQYLDLKLNEIDTV------- 159 (317)
T ss_dssp CEEECCSSCCSE-------EEECCCSSCE----EEECCS----SCCCSGGGBCTGGGSSEEEEECTTSCCCEE-------
T ss_pred CEEECCCCccCC-------cCccccCCCC----EEECCC----CCCCCccchhhhccCCCCEEECCCCCCCcc-------
Confidence 666654332221 0111122222 333332 111122223344555666666655532210
Q ss_pred hhhHHHHhhHHHHHhhc-CCCCCcceEEEeeeCCCCCCCcccCccCccEEEEcCcCCCCCCCCCCCCCCcceeecccccc
Q 038751 710 EMNEEKEAKHEAVCEAL-RPPPDIKSLEIMVFKGRTPSNWIGSLNKLKMLTLNSFVKCEIMPPLGKLPSLEILRIWHMRS 788 (915)
Q Consensus 710 ~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~Lp~L~~L~L~~~~~ 788 (915)
.+..+ ..+++|+.|++++|....+|... .+++|++|+|++|......+.++.+++|++|++++|.
T Consensus 160 ------------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~- 225 (317)
T 3o53_A 160 ------------NFAELAASSDTLEHLNLQYNFIYDVKGQV-VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK- 225 (317)
T ss_dssp ------------EGGGGGGGTTTCCEEECTTSCCCEEECCC-CCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSC-
T ss_pred ------------cHHHHhhccCcCCEEECCCCcCccccccc-ccccCCEEECCCCcCCcchhhhcccCcccEEECcCCc-
Confidence 01111 12455666666666554444322 3556666666665433333335556666666666554
Q ss_pred ceEeCccccCCcccccccccccCCCcccccCcccceeeecCcccccccccCCCCcccCcccceeecccCccccCCCcCCC
Q 038751 789 VKRVGDEFLGMEISDHIHIHGTSSSSSVIAFPKLQKLELTGMDELEEWDFGNDDITIMPHIKSLYITYCEKLKSLPELLL 868 (915)
Q Consensus 789 l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~lp~L~~L~l~~c~~L~~lp~~l~ 868 (915)
++.+|.. +..+++|+.|++.+++-..... +..+..+++|+.|.+.+|+.+...+..-.
T Consensus 226 l~~l~~~--------------------~~~l~~L~~L~l~~N~~~~~~~--~~~~~~~~~L~~l~l~~~~~l~~~~~~~~ 283 (317)
T 3o53_A 226 LVLIEKA--------------------LRFSQNLEHFDLRGNGFHCGTL--RDFFSKNQRVQTVAKQTVKKLTGQNEEEC 283 (317)
T ss_dssp CCEECTT--------------------CCCCTTCCEEECTTCCCBHHHH--HHHHHTCHHHHHHHHHHHHHHHSSSSCCC
T ss_pred ccchhhH--------------------hhcCCCCCEEEccCCCccCcCH--HHHHhccccceEEECCCchhccCCchhcc
Confidence 4444432 3467899999998875221111 11145789999999998888887654433
Q ss_pred CCCCcCeEeEcCCcchhHhh
Q 038751 869 RSTTLESLTIFGVPIVQESF 888 (915)
Q Consensus 869 ~l~~L~~L~l~~c~~l~~~~ 888 (915)
..+.+....-..|..+...+
T Consensus 284 ~~~~~~~~~~~cc~~l~~~~ 303 (317)
T 3o53_A 284 TVPTLGHYGAYCCEDLPAPF 303 (317)
T ss_dssp SSTTCEEETTEEEBCCTTTH
T ss_pred CCCceecccceeeccCChhH
Confidence 33444443344466655443
No 73
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.42 E-value=5.5e-15 Score=159.82 Aligned_cols=242 Identities=13% Similarity=0.084 Sum_probs=157.4
Q ss_pred hccccCCcceeeecCCCCCccccccccCCCcCCCcccCcc-----cCCcCCCCCCCCccCceeecccCCccCCCCcCCCC
Q 038751 579 GLFDQLTCLRALKIEDLPPTIKIPKGLENLIHLRYLKLSM-----VPNGIERLTSLRTLSEFAVARVGGKYSSKSCNLEG 653 (915)
Q Consensus 579 ~~i~~L~~Lr~L~l~~~~~~~~lP~~i~~L~~Lr~L~l~~-----lP~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~ 653 (915)
..+..+++|++|+++++......|..+.++++|++|+++. .++ +..+++|++|++..+.. .+
T Consensus 28 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l------------~~ 94 (317)
T 3o53_A 28 SLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYV------------QE 94 (317)
T ss_dssp HHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEE------------EE
T ss_pred HHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCcc------------cc
Confidence 4456678999999999988745557899999999999653 333 78888899887764432 22
Q ss_pred CcCccccccceeEcCccCCCChhhHhHhhccCCCCCCceEEEEecCCCCchhhhhhhhhHHHHhhHHHHHhhcCCCCCcc
Q 038751 654 LRPLNHLRGFLQISGLGNVTDADEAKNAHLEKKKNLIDLILIFNEREESDDEKASEEMNEEKEAKHEAVCEALRPPPDIK 733 (915)
Q Consensus 654 L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~ 733 (915)
+.....|+ .|.+.+. ..... ....+++|+.|+++.|.... .....+..+++|+
T Consensus 95 l~~~~~L~-~L~l~~n----~l~~~---~~~~~~~L~~L~l~~N~l~~-------------------~~~~~~~~l~~L~ 147 (317)
T 3o53_A 95 LLVGPSIE-TLHAANN----NISRV---SCSRGQGKKNIYLANNKITM-------------------LRDLDEGCRSRVQ 147 (317)
T ss_dssp EEECTTCC-EEECCSS----CCSEE---EECCCSSCEEEECCSSCCCS-------------------GGGBCTGGGSSEE
T ss_pred ccCCCCcC-EEECCCC----ccCCc---CccccCCCCEEECCCCCCCC-------------------ccchhhhccCCCC
Confidence 22223333 4444331 11111 12234567777777665321 0112334456777
Q ss_pred eEEEeeeCCCCC-CCcc-cCccCccEEEEcCcCCCCCCCCCCCCCCcceeeccccccceEeCccccCCcccccccccccC
Q 038751 734 SLEIMVFKGRTP-SNWI-GSLNKLKMLTLNSFVKCEIMPPLGKLPSLEILRIWHMRSVKRVGDEFLGMEISDHIHIHGTS 811 (915)
Q Consensus 734 ~L~l~~~~~~~~-p~~~-~~l~~L~~L~L~~~~~~~~l~~l~~Lp~L~~L~L~~~~~l~~~~~~~~~~~~l~~l~l~~~~ 811 (915)
.|++++|..... |..+ ..+++|++|+|++|. ...++....+++|++|++++|. ++.++..
T Consensus 148 ~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~---------------- 209 (317)
T 3o53_A 148 YLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKGQVVFAKLKTLDLSSNK-LAFMGPE---------------- 209 (317)
T ss_dssp EEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEECCCCCTTCCEEECCSSC-CCEECGG----------------
T ss_pred EEECCCCCCCcccHHHHhhccCcCCEEECCCCc-CcccccccccccCCEEECCCCc-CCcchhh----------------
Confidence 777777766543 3333 356777777777764 3344555567777777777765 5555443
Q ss_pred CCcccccCcccceeeecCcccccccccCCCCcccCcccceeecccCccc-cCCCcCCCCCCCcCeEeEcCCcchhH
Q 038751 812 SSSSVIAFPKLQKLELTGMDELEEWDFGNDDITIMPHIKSLYITYCEKL-KSLPELLLRSTTLESLTIFGVPIVQE 886 (915)
Q Consensus 812 ~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~lp~L~~L~l~~c~~L-~~lp~~l~~l~~L~~L~l~~c~~l~~ 886 (915)
+..+++|+.|+++++ .+..++ ..+..+++|+.|++++|+.. ..+|..+..+++|+.|++.+|+.+..
T Consensus 210 ----~~~l~~L~~L~L~~N-~l~~l~---~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~ 277 (317)
T 3o53_A 210 ----FQSAAGVTWISLRNN-KLVLIE---KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTG 277 (317)
T ss_dssp ----GGGGTTCSEEECTTS-CCCEEC---TTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred ----hcccCcccEEECcCC-cccchh---hHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccC
Confidence 347889999999987 455543 23568899999999999755 46788888899999999998776644
No 74
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.41 E-value=2.9e-13 Score=154.20 Aligned_cols=215 Identities=23% Similarity=0.203 Sum_probs=122.4
Q ss_pred cceEEEEEEccccccC-ccccCCCCceeEEEeccCCCCceeccccc-hhccccCCcceeeecCCCCCccccccc-cCCCc
Q 038751 533 EKLRHLMLVLGFWAKF-PFSIFDAKTLHSLILVYSSNNQVAASPVL-QGLFDQLTCLRALKIEDLPPTIKIPKG-LENLI 609 (915)
Q Consensus 533 ~~~r~Lsl~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~lrv~~~~l-p~~i~~L~~Lr~L~l~~~~~~~~lP~~-i~~L~ 609 (915)
..+++|++++|.+... +..+..+++|++|.+.+|. +..+ |..|+++.+|++|+|++|... .+|.. +.+++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~------i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~ 147 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS------IRQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLS 147 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSC------CCEECTTTTTTCTTCCEEECCSSCCS-BCCTTTSSSCT
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCc------cCCcChhhccCcccCCEEECCCCcCC-ccChhhhcccC
Confidence 5678888887777653 4567778888888887773 3333 367778888888888887766 55544 77788
Q ss_pred CCCcccCc-----ccCC-cCCCCCCCCccCceeecccCCccCCCCcCCCCCcCccccccceeEcCccCCCChhhHhHhhc
Q 038751 610 HLRYLKLS-----MVPN-GIERLTSLRTLSEFAVARVGGKYSSKSCNLEGLRPLNHLRGFLQISGLGNVTDADEAKNAHL 683 (915)
Q Consensus 610 ~Lr~L~l~-----~lP~-~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l 683 (915)
+|++|+++ .+|. .+.++++|++|++..+.... ......+.++.+|+ .|.+.+.. +.. ...+
T Consensus 148 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~------~i~~~~~~~l~~L~-~L~L~~n~-l~~-----~~~~ 214 (452)
T 3zyi_A 148 KLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLE------YISEGAFEGLFNLK-YLNLGMCN-IKD-----MPNL 214 (452)
T ss_dssp TCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCC------EECTTTTTTCTTCC-EEECTTSC-CSS-----CCCC
T ss_pred CCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCcc------ccChhhccCCCCCC-EEECCCCc-ccc-----cccc
Confidence 88888743 3443 46677777777665433222 01111122233333 44443311 111 1235
Q ss_pred cCCCCCCceEEEEecCCCCchhhhhhhhhHHHHhhHHHHHhhcCCCCCcceEEEeeeCCCCC-CCcccCccCccEEEEcC
Q 038751 684 EKKKNLIDLILIFNEREESDDEKASEEMNEEKEAKHEAVCEALRPPPDIKSLEIMVFKGRTP-SNWIGSLNKLKMLTLNS 762 (915)
Q Consensus 684 ~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-p~~~~~l~~L~~L~L~~ 762 (915)
..+++|+.|+|+.|.... .....+..+++|+.|++.+|....+ |..+..+++|+.|+|++
T Consensus 215 ~~l~~L~~L~Ls~N~l~~-------------------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 275 (452)
T 3zyi_A 215 TPLVGLEELEMSGNHFPE-------------------IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAH 275 (452)
T ss_dssp TTCTTCCEEECTTSCCSE-------------------ECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred cccccccEEECcCCcCcc-------------------cCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCC
Confidence 556666666666554221 1123445556666666666655443 44555666666666666
Q ss_pred cCCCCCCCC--CCCCCCcceeeccccc
Q 038751 763 FVKCEIMPP--LGKLPSLEILRIWHMR 787 (915)
Q Consensus 763 ~~~~~~l~~--l~~Lp~L~~L~L~~~~ 787 (915)
|.. ..+|. +..+++|++|+|++|+
T Consensus 276 N~l-~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 276 NNL-SSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp SCC-SCCCTTSSTTCTTCCEEECCSSC
T ss_pred CcC-CccChHHhccccCCCEEEccCCC
Confidence 633 23332 4556666666666654
No 75
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.38 E-value=5.1e-14 Score=151.82 Aligned_cols=131 Identities=15% Similarity=0.122 Sum_probs=71.2
Q ss_pred hcCCCCCcceEEEeeeCCCC---CCCcc--cCccCccEEEEcCcCCCC--CCCC--CCCCCCcceeeccccccceEeC-c
Q 038751 725 ALRPPPDIKSLEIMVFKGRT---PSNWI--GSLNKLKMLTLNSFVKCE--IMPP--LGKLPSLEILRIWHMRSVKRVG-D 794 (915)
Q Consensus 725 ~l~~~~~L~~L~l~~~~~~~---~p~~~--~~l~~L~~L~L~~~~~~~--~l~~--l~~Lp~L~~L~L~~~~~l~~~~-~ 794 (915)
.+..+++|+.|++++|.... +|..+ ..+++|++|+|++|.... .++. +..+++|++|++++|. +...+ .
T Consensus 168 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~ 246 (312)
T 1wwl_A 168 QVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNS-LRDAAGA 246 (312)
T ss_dssp TCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSC-CCSSCCC
T ss_pred HhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCc-CCcccch
Confidence 34455566666666554322 12222 456666666666663221 1110 2345666666666654 22221 1
Q ss_pred cccCCcccccccccccCCCcccccCcccceeeecCcccccccccCCCCcccCcccceeecccCccccCCCcCCCCCCCcC
Q 038751 795 EFLGMEISDHIHIHGTSSSSSVIAFPKLQKLELTGMDELEEWDFGNDDITIMPHIKSLYITYCEKLKSLPELLLRSTTLE 874 (915)
Q Consensus 795 ~~~~~~~l~~l~l~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~lp~L~~L~l~~c~~L~~lp~~l~~l~~L~ 874 (915)
.. ...+++|+.|+++++. +..++. .+ +++|+.|++++| ++..+|. +..+++|+
T Consensus 247 ~~-------------------~~~l~~L~~L~Ls~N~-l~~ip~---~~--~~~L~~L~Ls~N-~l~~~p~-~~~l~~L~ 299 (312)
T 1wwl_A 247 PS-------------------CDWPSQLNSLNLSFTG-LKQVPK---GL--PAKLSVLDLSYN-RLDRNPS-PDELPQVG 299 (312)
T ss_dssp SC-------------------CCCCTTCCEEECTTSC-CSSCCS---SC--CSEEEEEECCSS-CCCSCCC-TTTSCEEE
T ss_pred hh-------------------hhhcCCCCEEECCCCc-cChhhh---hc--cCCceEEECCCC-CCCCChh-HhhCCCCC
Confidence 00 1245667777776652 333321 12 267888888877 5777776 77788888
Q ss_pred eEeEcCCcc
Q 038751 875 SLTIFGVPI 883 (915)
Q Consensus 875 ~L~l~~c~~ 883 (915)
+|++++++.
T Consensus 300 ~L~L~~N~l 308 (312)
T 1wwl_A 300 NLSLKGNPF 308 (312)
T ss_dssp EEECTTCTT
T ss_pred EEeccCCCC
Confidence 888887754
No 76
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.38 E-value=5.2e-14 Score=161.28 Aligned_cols=72 Identities=14% Similarity=0.051 Sum_probs=40.5
Q ss_pred cceEEEEEEccccccC-ccccCCCCceeEEEeccCCCCceeccccchhccccCCcceeeecCCCCCccccccccCCCcCC
Q 038751 533 EKLRHLMLVLGFWAKF-PFSIFDAKTLHSLILVYSSNNQVAASPVLQGLFDQLTCLRALKIEDLPPTIKIPKGLENLIHL 611 (915)
Q Consensus 533 ~~~r~Lsl~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~lrv~~~~lp~~i~~L~~Lr~L~l~~~~~~~~lP~~i~~L~~L 611 (915)
..++.|++++|.+... |..+..+++|++|.+++|. +...+. ++.+++|++|++++|... .+|. .++|
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~------l~~~~~-l~~l~~L~~L~Ls~N~l~-~l~~----~~~L 101 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV------LYETLD-LESLSTLRTLDLNNNYVQ-ELLV----GPSI 101 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSC------CEEEEE-CTTCTTCCEEECCSSEEE-EEEE----CTTC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCC------CCCCcc-cccCCCCCEEEecCCcCC-CCCC----CCCc
Confidence 3566666666666543 3456666666666666663 332332 666666666666666544 3332 2455
Q ss_pred CcccC
Q 038751 612 RYLKL 616 (915)
Q Consensus 612 r~L~l 616 (915)
++|++
T Consensus 102 ~~L~L 106 (487)
T 3oja_A 102 ETLHA 106 (487)
T ss_dssp CEEEC
T ss_pred CEEEC
Confidence 55553
No 77
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.37 E-value=2.5e-11 Score=135.05 Aligned_cols=296 Identities=11% Similarity=0.094 Sum_probs=175.0
Q ss_pred ccCccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCC---CeEEEEEeCCCCCHHHH
Q 038751 169 NVSDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENF---DKRIWVCVSDPFDEFRI 245 (915)
Q Consensus 169 ~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~vs~~~~~~~~ 245 (915)
.+..++||+.+++.+.+++..... ....+.+.|+|++|+||||||+.+++. ....+ ...+|+++....+...+
T Consensus 18 ~p~~~~gr~~e~~~l~~~l~~~~~--~~~~~~vli~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~i~~~~~~~~~~~ 93 (386)
T 2qby_A 18 IPDELPHREDQIRKIASILAPLYR--EEKPNNIFIYGLTGTGKTAVVKFVLSK--LHKKFLGKFKHVYINTRQIDTPYRV 93 (386)
T ss_dssp CCSCCTTCHHHHHHHHHSSGGGGG--TCCCCCEEEEECTTSSHHHHHHHHHHH--HHHHTCSSCEEEEEEHHHHCSHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHc--CCCCCeEEEECCCCCCHHHHHHHHHHH--HHHHhcCCceEEEEECCCCCCHHHH
Confidence 346799999999999998864321 224568999999999999999999884 33322 24678887776777788
Q ss_pred HHHHHHHhhCCCCC-cccHHHHHHHHHHHhc--cCeEEEEEeCCCCCC----ccChhhhHHhhhc-CCCCceEEEEcCch
Q 038751 246 AKAIIEGLEGSLPN-LRELNSLLEYIHTSIK--EKKFFLILDDVWPDD----YSKWEPFHNCLMN-GLCGSRILVTTRKE 317 (915)
Q Consensus 246 ~~~i~~~l~~~~~~-~~~~~~~~~~l~~~l~--~k~~LlVlDdvw~~~----~~~~~~l~~~l~~-~~~gs~iivTtR~~ 317 (915)
+..++.+++...+. .....++...+.+.+. +++.+||+||++... ...+..+...+.. ...+..+|+||+..
T Consensus 94 ~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~ 173 (386)
T 2qby_A 94 LADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDV 173 (386)
T ss_dssp HHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCG
T ss_pred HHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCC
Confidence 88888777543221 2234555566666554 458999999996421 2233334333322 23355678888765
Q ss_pred HHHhhhc-----C--cCeEeCCCCCHHHHHHHHHHhHcCCC-CCCchhHHHHHHHHHHHhcC---CCchHHHHHHhHhh-
Q 038751 318 TVARMME-----S--TDVISIKELSEQECWSLFKRFAFSGR-SPTECEQLEEIGRKIVGKCK---GLPLAAKTIGSLLR- 385 (915)
Q Consensus 318 ~v~~~~~-----~--~~~~~l~~L~~~~~~~lf~~~~~~~~-~~~~~~~l~~~~~~i~~~c~---G~PLai~~~~~~l~- 385 (915)
.....+. . ...+.+++++.++..+++...+.... ..... .++.+.+++.++ |.|..+..+.....
T Consensus 174 ~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~ 250 (386)
T 2qby_A 174 KFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLP---DNVIKLCAALAAREHGDARRALDLLRVSGE 250 (386)
T ss_dssp GGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSC---HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred ChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4322211 1 24899999999999999987642111 11111 234555666666 99985443322211
Q ss_pred -----c--CCCHHHHHHHHhhhccccccccccchHHHHHhhcCCChHhhhHHhHhccCCC-C-cccChHHHHHHH--HH-
Q 038751 386 -----F--KKTREEWHIILNSEMWQLEEFERGLLAPLLLSYNDLPSAIKRCFLYCAVFPK-D-YNLDKDELVKLW--MA- 453 (915)
Q Consensus 386 -----~--~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~~~s~fp~-~-~~i~~~~Li~~W--~a- 453 (915)
. .-+.++...++... ....+.-++..+|++.+..+..++.+-+ + ..+....+.+.. ++
T Consensus 251 ~a~~~~~~~i~~~~v~~a~~~~----------~~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~ 320 (386)
T 2qby_A 251 IAERMKDTKVKEEYVYMAKEEI----------ERDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICK 320 (386)
T ss_dssp HHHHTTCSSCCHHHHHHHHHHH----------HHHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHH
T ss_pred HHHhcCCCccCHHHHHHHHHHH----------hhchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHH
Confidence 1 11445555444322 1234556678899888887777764211 1 123343332222 11
Q ss_pred -cCCcccCCCccHHHHHHHHHHHHHHcccccccc
Q 038751 454 -QGYIEQKGNIEMEMTGEWYFDFLATRSFFQEFD 486 (915)
Q Consensus 454 -eg~i~~~~~~~~e~~~~~~l~~L~~~sll~~~~ 486 (915)
.| +.+ . .......+++.|...|++....
T Consensus 321 ~~g-~~~---~-~~~~~~~~l~~L~~~gli~~~~ 349 (386)
T 2qby_A 321 KLG-VEA---V-TQRRVSDIINELDMVGILTAKV 349 (386)
T ss_dssp HHT-CCC---C-CHHHHHHHHHHHHHHTSEEEEE
T ss_pred hcC-CCC---C-CHHHHHHHHHHHHhCCCEEEEe
Confidence 12 111 1 1245567899999999998653
No 78
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.37 E-value=4.6e-13 Score=142.34 Aligned_cols=193 Identities=21% Similarity=0.188 Sum_probs=142.0
Q ss_pred ccceEEEEEEccccccCc-cccCCCCceeEEEeccCCCCceeccccc-hhccccCCcceeeecCCCC-Ccccc-ccccCC
Q 038751 532 QEKLRHLMLVLGFWAKFP-FSIFDAKTLHSLILVYSSNNQVAASPVL-QGLFDQLTCLRALKIEDLP-PTIKI-PKGLEN 607 (915)
Q Consensus 532 ~~~~r~Lsl~~~~~~~~~-~~~~~~~~Lr~L~l~~~~~~lrv~~~~l-p~~i~~L~~Lr~L~l~~~~-~~~~l-P~~i~~ 607 (915)
...+++|+++++.+...+ ..+..+++|++|.+.++. +..+ |..|+++.+|++|++++++ .. .+ |..+.+
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~------l~~~~~~~~~~l~~L~~L~l~~n~~l~-~~~~~~~~~ 103 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV------LARIDAAAFTGLALLEQLDLSDNAQLR-SVDPATFHG 103 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC------CCEECTTTTTTCTTCCEEECCSCTTCC-CCCTTTTTT
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCc------cceeCHhhcCCccCCCEEeCCCCCCcc-ccCHHHhcC
Confidence 478999999999887655 468899999999999884 4444 7889999999999999997 55 55 778999
Q ss_pred CcCCCcccCc-----cc-CCcCCCCCCCCccCceeecccCCccCCCCcCCCCCcCccccccceeEcCccCCCChhhHhHh
Q 038751 608 LIHLRYLKLS-----MV-PNGIERLTSLRTLSEFAVARVGGKYSSKSCNLEGLRPLNHLRGFLQISGLGNVTDADEAKNA 681 (915)
Q Consensus 608 L~~Lr~L~l~-----~l-P~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~ 681 (915)
+.+|++|+++ .+ |..+.++++|++|++..+.... + ...
T Consensus 104 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~------------~------------------------~~~ 147 (285)
T 1ozn_A 104 LGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA------------L------------------------PDD 147 (285)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC------------C------------------------CTT
T ss_pred CcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccc------------c------------------------CHh
Confidence 9999999954 33 3446778888887654322110 0 011
Q ss_pred hccCCCCCCceEEEEecCCCCchhhhhhhhhHHHHhhHHHHHhhcCCCCCcceEEEeeeCCCCC-CCcccCccCccEEEE
Q 038751 682 HLEKKKNLIDLILIFNEREESDDEKASEEMNEEKEAKHEAVCEALRPPPDIKSLEIMVFKGRTP-SNWIGSLNKLKMLTL 760 (915)
Q Consensus 682 ~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-p~~~~~l~~L~~L~L 760 (915)
.+.++++|+.|+++.|.... .....+..+++|+.|++.+|..... |.++..+++|+.|+|
T Consensus 148 ~~~~l~~L~~L~l~~n~l~~-------------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 208 (285)
T 1ozn_A 148 TFRDLGNLTHLFLHGNRISS-------------------VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL 208 (285)
T ss_dssp TTTTCTTCCEEECCSSCCCE-------------------ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred HhccCCCccEEECCCCcccc-------------------cCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeC
Confidence 24456677777777664321 0012355678899999998887665 778889999999999
Q ss_pred cCcCCCCCCCC--CCCCCCcceeeccccc
Q 038751 761 NSFVKCEIMPP--LGKLPSLEILRIWHMR 787 (915)
Q Consensus 761 ~~~~~~~~l~~--l~~Lp~L~~L~L~~~~ 787 (915)
++|.... +++ ++.+++|++|++++++
T Consensus 209 ~~n~l~~-~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 209 FANNLSA-LPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp CSSCCSC-CCHHHHTTCTTCCEEECCSSC
T ss_pred CCCcCCc-CCHHHcccCcccCEEeccCCC
Confidence 9985443 443 7889999999999886
No 79
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.34 E-value=4.7e-12 Score=130.67 Aligned_cols=157 Identities=14% Similarity=0.075 Sum_probs=106.3
Q ss_pred hccCCCCCCceEEEE-ecCCCCchhhhhhhhhHHHHhhHHHHHhhcCCCCCcceEEEeeeCCCCCCCcccCccCcc---E
Q 038751 682 HLEKKKNLIDLILIF-NEREESDDEKASEEMNEEKEAKHEAVCEALRPPPDIKSLEIMVFKGRTPSNWIGSLNKLK---M 757 (915)
Q Consensus 682 ~l~~l~~L~~L~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~---~ 757 (915)
.+.++++|+.|+++. |.... .....+..+++|+.|++.+|....+|. +..+++|+ .
T Consensus 75 ~f~~l~~L~~L~l~~~n~l~~-------------------i~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~ 134 (239)
T 2xwt_C 75 SFYNLSKVTHIEIRNTRNLTY-------------------IDPDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFI 134 (239)
T ss_dssp TEESCTTCCEEEEEEETTCCE-------------------ECTTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEE
T ss_pred HcCCCcCCcEEECCCCCCeeE-------------------cCHHHhCCCCCCCEEeCCCCCCccccc-cccccccccccE
Confidence 355667788888876 43211 001234456778888888887777776 66666676 8
Q ss_pred EEEcCcCCCCCCCC--CCCCCCcc-eeeccccccceEeCccccCCcccccccccccCCCcccccCcccceeeecCccccc
Q 038751 758 LTLNSFVKCEIMPP--LGKLPSLE-ILRIWHMRSVKRVGDEFLGMEISDHIHIHGTSSSSSVIAFPKLQKLELTGMDELE 834 (915)
Q Consensus 758 L~L~~~~~~~~l~~--l~~Lp~L~-~L~L~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~f~~L~~L~l~~~~~l~ 834 (915)
|++++|.....+|. ++.+++|+ +|+++++. ++.++...+ ..++|+.|++.++..+.
T Consensus 135 L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~-l~~i~~~~~--------------------~~~~L~~L~L~~n~~l~ 193 (239)
T 2xwt_C 135 LEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG-FTSVQGYAF--------------------NGTKLDAVYLNKNKYLT 193 (239)
T ss_dssp EEEESCTTCCEECTTTTTTTBSSEEEEECCSCC-CCEECTTTT--------------------TTCEEEEEECTTCTTCC
T ss_pred EECCCCcchhhcCcccccchhcceeEEEcCCCC-CcccCHhhc--------------------CCCCCCEEEcCCCCCcc
Confidence 88887744444443 67788888 88887765 556664322 22689999999876566
Q ss_pred ccccCCCCcccC-cccceeecccCccccCCCcCCCCCCCcCeEeEcCCcch
Q 038751 835 EWDFGNDDITIM-PHIKSLYITYCEKLKSLPELLLRSTTLESLTIFGVPIV 884 (915)
Q Consensus 835 ~~~~~~~~~~~l-p~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~c~~l 884 (915)
.++. ..+..+ ++|+.|+++++ .+..+|.. .+++|+.|++.++..|
T Consensus 194 ~i~~--~~~~~l~~~L~~L~l~~N-~l~~l~~~--~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 194 VIDK--DAFGGVYSGPSLLDVSQT-SVTALPSK--GLEHLKELIARNTWTL 239 (239)
T ss_dssp EECT--TTTTTCSBCCSEEECTTC-CCCCCCCT--TCTTCSEEECTTC---
T ss_pred cCCH--HHhhccccCCcEEECCCC-ccccCChh--HhccCceeeccCccCC
Confidence 5542 224577 89999999987 67888876 5789999999988653
No 80
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.32 E-value=6.2e-14 Score=165.89 Aligned_cols=314 Identities=11% Similarity=0.004 Sum_probs=166.8
Q ss_pred cceEEEEEEccccccC-----ccccCCCCceeEEEeccCCCCceeccccchhccccCCcceeeecCCCCCccccccccCC
Q 038751 533 EKLRHLMLVLGFWAKF-----PFSIFDAKTLHSLILVYSSNNQVAASPVLQGLFDQLTCLRALKIEDLPPTIKIPKGLEN 607 (915)
Q Consensus 533 ~~~r~Lsl~~~~~~~~-----~~~~~~~~~Lr~L~l~~~~~~lrv~~~~lp~~i~~L~~Lr~L~l~~~~~~~~lP~~i~~ 607 (915)
..+++|++.++.+... +.....+++|++|.+.++.-. .+....++..+.++++|++|++.+|... .+|..+.+
T Consensus 164 ~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~-~~~~~~l~~~~~~~~~L~~L~L~~~~~~-~l~~~~~~ 241 (592)
T 3ogk_B 164 RKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFA-KISPKDLETIARNCRSLVSVKVGDFEIL-ELVGFFKA 241 (592)
T ss_dssp TTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCS-SCCHHHHHHHHHHCTTCCEEECSSCBGG-GGHHHHHH
T ss_pred CCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCC-ccCHHHHHHHHhhCCCCcEEeccCccHH-HHHHHHhh
Confidence 5677888877764321 122345778888888766310 0111345666677888888888877665 67777778
Q ss_pred CcCCCcccCc---------ccCCcCCCCCCCCccCceeecccCCccCCCCcCCCCCcCccccccceeEcCccCCCChhhH
Q 038751 608 LIHLRYLKLS---------MVPNGIERLTSLRTLSEFAVARVGGKYSSKSCNLEGLRPLNHLRGFLQISGLGNVTDADEA 678 (915)
Q Consensus 608 L~~Lr~L~l~---------~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~ 678 (915)
+++|++|++. ..+..+..+++|+.|.+..+... .....+..+++|+ .|.+.+.. +. ...
T Consensus 242 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~--------~l~~~~~~~~~L~-~L~Ls~~~-l~--~~~ 309 (592)
T 3ogk_B 242 AANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN--------EMPILFPFAAQIR-KLDLLYAL-LE--TED 309 (592)
T ss_dssp CTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT--------TGGGGGGGGGGCC-EEEETTCC-CC--HHH
T ss_pred hhHHHhhcccccccccchHHHHHHhhccccccccCccccchh--------HHHHHHhhcCCCc-EEecCCCc-CC--HHH
Confidence 8888887753 22334566666666644332111 1111123344444 56665533 21 122
Q ss_pred hHhhccCCCCCCceEEEEecCCCCchhhhhhhhhHHHHhhHHHHHhhcCCCCCcceEEEee----------eCCCC---C
Q 038751 679 KNAHLEKKKNLIDLILIFNEREESDDEKASEEMNEEKEAKHEAVCEALRPPPDIKSLEIMV----------FKGRT---P 745 (915)
Q Consensus 679 ~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~----------~~~~~---~ 745 (915)
....+..+++|+.|+++.+. ...........+++|++|++.+ +.... +
T Consensus 310 ~~~~~~~~~~L~~L~L~~~~-------------------~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~ 370 (592)
T 3ogk_B 310 HCTLIQKCPNLEVLETRNVI-------------------GDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGL 370 (592)
T ss_dssp HHHHHTTCTTCCEEEEEGGG-------------------HHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHH
T ss_pred HHHHHHhCcCCCEEeccCcc-------------------CHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHH
Confidence 22335667777777777221 1111222223456677777773 22211 1
Q ss_pred CCcccCccCccEEEEcCcCCCC-CCCCCCC-CCCcceeeccc---cccceEeCcc------ccCCcccccccccccC--C
Q 038751 746 SNWIGSLNKLKMLTLNSFVKCE-IMPPLGK-LPSLEILRIWH---MRSVKRVGDE------FLGMEISDHIHIHGTS--S 812 (915)
Q Consensus 746 p~~~~~l~~L~~L~L~~~~~~~-~l~~l~~-Lp~L~~L~L~~---~~~l~~~~~~------~~~~~~l~~l~l~~~~--~ 812 (915)
+.....+++|++|+++.+.... .+..++. +++|+.|++.+ |+.++..|.+ +.+...++.|+++.|. .
T Consensus 371 ~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l 450 (592)
T 3ogk_B 371 IALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGL 450 (592)
T ss_dssp HHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGC
T ss_pred HHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCc
Confidence 1122346777777774332111 1112333 66777777763 3334332211 2234456666664322 1
Q ss_pred Cc-----ccccCcccceeeecCcccccccccCCCCcccCcccceeecccCccccC--CCcCCCCCCCcCeEeEcCCc
Q 038751 813 SS-----SVIAFPKLQKLELTGMDELEEWDFGNDDITIMPHIKSLYITYCEKLKS--LPELLLRSTTLESLTIFGVP 882 (915)
Q Consensus 813 ~~-----~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~lp~L~~L~l~~c~~L~~--lp~~l~~l~~L~~L~l~~c~ 882 (915)
.. ....+++|+.|++.++. +....+.. -+..+++|++|+|++|+ +.. ++..+..+++|++|++++|.
T Consensus 451 ~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~-~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 451 TDLGLSYIGQYSPNVRWMLLGYVG-ESDEGLME-FSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp CHHHHHHHHHSCTTCCEEEECSCC-SSHHHHHH-HHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred cHHHHHHHHHhCccceEeeccCCC-CCHHHHHH-HHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc
Confidence 11 11247788888888764 33211110 02367888888888886 432 45445567888888888887
No 81
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.31 E-value=4.2e-12 Score=136.32 Aligned_cols=189 Identities=17% Similarity=0.134 Sum_probs=128.3
Q ss_pred cceEEEEEEccccccCccccCCCCceeEEEeccCCCCceeccccchhccccCCcceeeecCCCCCccccccccCCCcCCC
Q 038751 533 EKLRHLMLVLGFWAKFPFSIFDAKTLHSLILVYSSNNQVAASPVLQGLFDQLTCLRALKIEDLPPTIKIPKGLENLIHLR 612 (915)
Q Consensus 533 ~~~r~Lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~lrv~~~~lp~~i~~L~~Lr~L~l~~~~~~~~lP~~i~~L~~Lr 612 (915)
..+++|++.++.+..++ .+..+++|++|.+.+| .+..+|. ++++++|++|++++|... .+| .+.++.+|+
T Consensus 41 ~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n------~i~~~~~-~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~ 110 (308)
T 1h6u_A 41 DGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDN------QITDLAP-LKNLTKITELELSGNPLK-NVS-AIAGLQSIK 110 (308)
T ss_dssp HTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSS------CCCCCGG-GTTCCSCCEEECCSCCCS-CCG-GGTTCTTCC
T ss_pred CCcCEEEeeCCCccCch-hhhccCCCCEEEccCC------cCCCChh-HccCCCCCEEEccCCcCC-Cch-hhcCCCCCC
Confidence 56788888877776544 5777888888888777 4555665 788888888888887765 444 577777777
Q ss_pred cccCcc-----cCCcCCCCCCCCccCceeecccCCccCCCCcCCCCCcCccccccceeEcCccCCCChhhHhHhhccCCC
Q 038751 613 YLKLSM-----VPNGIERLTSLRTLSEFAVARVGGKYSSKSCNLEGLRPLNHLRGFLQISGLGNVTDADEAKNAHLEKKK 687 (915)
Q Consensus 613 ~L~l~~-----lP~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~l~ 687 (915)
+|+++. +|. +..+++|++|++ .+.. +... ..+..++
T Consensus 111 ~L~l~~n~l~~~~~-l~~l~~L~~L~l--------------------------------~~n~-l~~~-----~~l~~l~ 151 (308)
T 1h6u_A 111 TLDLTSTQITDVTP-LAGLSNLQVLYL--------------------------------DLNQ-ITNI-----SPLAGLT 151 (308)
T ss_dssp EEECTTSCCCCCGG-GTTCTTCCEEEC--------------------------------CSSC-CCCC-----GGGGGCT
T ss_pred EEECCCCCCCCchh-hcCCCCCCEEEC--------------------------------CCCc-cCcC-----ccccCCC
Confidence 777443 222 444444444433 2210 0111 0155677
Q ss_pred CCCceEEEEecCCCCchhhhhhhhhHHHHhhHHHHHhhcCCCCCcceEEEeeeCCCCCCCcccCccCccEEEEcCcCCCC
Q 038751 688 NLIDLILIFNEREESDDEKASEEMNEEKEAKHEAVCEALRPPPDIKSLEIMVFKGRTPSNWIGSLNKLKMLTLNSFVKCE 767 (915)
Q Consensus 688 ~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~ 767 (915)
+|+.|+++.|.... +..+..+++|+.|++++|....+|. +..+++|++|+|++|. ..
T Consensus 152 ~L~~L~l~~n~l~~---------------------~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~-l~ 208 (308)
T 1h6u_A 152 NLQYLSIGNAQVSD---------------------LTPLANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQ-IS 208 (308)
T ss_dssp TCCEEECCSSCCCC---------------------CGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSC-CC
T ss_pred CccEEEccCCcCCC---------------------ChhhcCCCCCCEEECCCCccCcChh-hcCCCCCCEEEccCCc-cC
Confidence 88888888775321 1126678899999999998877765 7789999999999985 44
Q ss_pred CCCCCCCCCCcceeeccccccceEeCc
Q 038751 768 IMPPLGKLPSLEILRIWHMRSVKRVGD 794 (915)
Q Consensus 768 ~l~~l~~Lp~L~~L~L~~~~~l~~~~~ 794 (915)
.++++..+++|++|++++|+ +...+.
T Consensus 209 ~~~~l~~l~~L~~L~l~~N~-i~~~~~ 234 (308)
T 1h6u_A 209 DVSPLANTSNLFIVTLTNQT-ITNQPV 234 (308)
T ss_dssp BCGGGTTCTTCCEEEEEEEE-EECCCE
T ss_pred ccccccCCCCCCEEEccCCe-eecCCe
Confidence 55568899999999999887 554443
No 82
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.29 E-value=1.1e-13 Score=151.02 Aligned_cols=247 Identities=15% Similarity=0.124 Sum_probs=137.1
Q ss_pred eEEEEEEccccccCccccCCC--CceeEEEeccCCCCceeccccchhccccCCcceeeecCCCCCccc-cccccCCCcCC
Q 038751 535 LRHLMLVLGFWAKFPFSIFDA--KTLHSLILVYSSNNQVAASPVLQGLFDQLTCLRALKIEDLPPTIK-IPKGLENLIHL 611 (915)
Q Consensus 535 ~r~Lsl~~~~~~~~~~~~~~~--~~Lr~L~l~~~~~~lrv~~~~lp~~i~~L~~Lr~L~l~~~~~~~~-lP~~i~~L~~L 611 (915)
++++++.++.+. +..+..+ ++++.|.+.++ .+...+..+.++.+|++|++++|..... +|..+.++++|
T Consensus 49 ~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n------~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L 120 (336)
T 2ast_B 49 WQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRS------FMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKL 120 (336)
T ss_dssp SSEEECTTCBCC--HHHHHHHHHTTCSEEECTTC------EECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCC
T ss_pred heeeccccccCC--HHHHHhhhhccceEEEcCCc------cccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCC
Confidence 445555554443 2333333 56666666655 2333444456677777777776654322 56666666666
Q ss_pred CcccCcccC------CcCCCCCCCCccCceeecccCCccCCCCcCCCCCcCccccccceeEcCccCCCChhhHhHhhccC
Q 038751 612 RYLKLSMVP------NGIERLTSLRTLSEFAVARVGGKYSSKSCNLEGLRPLNHLRGFLQISGLGNVTDADEAKNAHLEK 685 (915)
Q Consensus 612 r~L~l~~lP------~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~ 685 (915)
++|+++... ..++++++|++ |.+.+...+.. ......+.+
T Consensus 121 ~~L~L~~~~l~~~~~~~l~~~~~L~~--------------------------------L~L~~~~~l~~--~~l~~~~~~ 166 (336)
T 2ast_B 121 QNLSLEGLRLSDPIVNTLAKNSNLVR--------------------------------LNLSGCSGFSE--FALQTLLSS 166 (336)
T ss_dssp SEEECTTCBCCHHHHHHHTTCTTCSE--------------------------------EECTTCBSCCH--HHHHHHHHH
T ss_pred CEEeCcCcccCHHHHHHHhcCCCCCE--------------------------------EECCCCCCCCH--HHHHHHHhc
Confidence 666654321 12222333333 33333221111 123344666
Q ss_pred CCCCCceEEEEe-cCCCCchhhhhhhhhHHHHhhHHHHHhhcCCCC-CcceEEEeeeC--C--CCCCCcccCccCccEEE
Q 038751 686 KKNLIDLILIFN-EREESDDEKASEEMNEEKEAKHEAVCEALRPPP-DIKSLEIMVFK--G--RTPSNWIGSLNKLKMLT 759 (915)
Q Consensus 686 l~~L~~L~L~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~--~--~~~p~~~~~l~~L~~L~ 759 (915)
+++|+.|++++| ... ...+...+..++ +|++|++++|. . ..+|..+..+++|++|+
T Consensus 167 ~~~L~~L~l~~~~~l~------------------~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~ 228 (336)
T 2ast_B 167 CSRLDELNLSWCFDFT------------------EKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 228 (336)
T ss_dssp CTTCCEEECCCCTTCC------------------HHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEE
T ss_pred CCCCCEEcCCCCCCcC------------------hHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEe
Confidence 778888888877 321 111233344466 88888888874 2 23455666788999999
Q ss_pred EcCcCCC--CCCCCCCCCCCcceeeccccccceEeCccccCCcccccccccccCCCcccccCcccceeeecCcccccccc
Q 038751 760 LNSFVKC--EIMPPLGKLPSLEILRIWHMRSVKRVGDEFLGMEISDHIHIHGTSSSSSVIAFPKLQKLELTGMDELEEWD 837 (915)
Q Consensus 760 L~~~~~~--~~l~~l~~Lp~L~~L~L~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~ 837 (915)
+++|... ..++.++.+++|++|++++|..+. +..+. .+..+++|+.|++.+| +....
T Consensus 229 l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~-----------------~l~~~~~L~~L~l~~~--i~~~~ 287 (336)
T 2ast_B 229 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDII--PETLL-----------------ELGEIPTLKTLQVFGI--VPDGT 287 (336)
T ss_dssp CTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCC--GGGGG-----------------GGGGCTTCCEEECTTS--SCTTC
T ss_pred CCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCC--HHHHH-----------------HHhcCCCCCEEeccCc--cCHHH
Confidence 9888743 345567888999999998886221 11111 1346888888888887 22211
Q ss_pred cCCCCcccC-cccceeecccCccccC-CCcCCC
Q 038751 838 FGNDDITIM-PHIKSLYITYCEKLKS-LPELLL 868 (915)
Q Consensus 838 ~~~~~~~~l-p~L~~L~l~~c~~L~~-lp~~l~ 868 (915)
+..+ .+|..|++.+| .+.. .|..+.
T Consensus 288 -----~~~l~~~l~~L~l~~n-~l~~~~~~~~~ 314 (336)
T 2ast_B 288 -----LQLLKEALPHLQINCS-HFTTIARPTIG 314 (336)
T ss_dssp -----HHHHHHHSTTSEESCC-CSCCTTCSSCS
T ss_pred -----HHHHHhhCcceEEecc-cCccccCCccc
Confidence 2233 24666777655 4544 444443
No 83
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.29 E-value=7e-14 Score=165.47 Aligned_cols=316 Identities=14% Similarity=0.098 Sum_probs=198.0
Q ss_pred ceEEEEEEcccc-cc--CccccCCCCceeEEEeccCCCCcee-ccccchhccccCCcceeeecCCCCCc----ccccccc
Q 038751 534 KLRHLMLVLGFW-AK--FPFSIFDAKTLHSLILVYSSNNQVA-ASPVLQGLFDQLTCLRALKIEDLPPT----IKIPKGL 605 (915)
Q Consensus 534 ~~r~Lsl~~~~~-~~--~~~~~~~~~~Lr~L~l~~~~~~lrv-~~~~lp~~i~~L~~Lr~L~l~~~~~~----~~lP~~i 605 (915)
.+++|++.++.. .. ++.....+++|++|.+.+|. +.. ....++..+..+++|++|+++.+... ..+|..+
T Consensus 139 ~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~--~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~ 216 (592)
T 3ogk_B 139 DLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESS--FSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIA 216 (592)
T ss_dssp GCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCE--EECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHH
T ss_pred cCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECcccc--ccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHH
Confidence 488888887652 11 22233478999999998873 100 11125556678899999999888765 2566667
Q ss_pred CCCcCCCcccCcc-----cCCcCCCCCCCCccCceeecccCCccCCCCcCCCCCcCccccccceeEcCccCCCChhhHhH
Q 038751 606 ENLIHLRYLKLSM-----VPNGIERLTSLRTLSEFAVARVGGKYSSKSCNLEGLRPLNHLRGFLQISGLGNVTDADEAKN 680 (915)
Q Consensus 606 ~~L~~Lr~L~l~~-----lP~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~ 680 (915)
.++++|++|+++. +|..+.++++|++|.+........ .......+..+.+|. .+.+.... ....+
T Consensus 217 ~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~~~~L~-~L~l~~~~-----~~~l~ 286 (592)
T 3ogk_B 217 RNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIG----MPEKYMNLVFPRKLC-RLGLSYMG-----PNEMP 286 (592)
T ss_dssp HHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTT----CTTSSSCCCCCTTCC-EEEETTCC-----TTTGG
T ss_pred hhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccc----hHHHHHHhhcccccc-ccCccccc-----hhHHH
Confidence 7889999998654 455677888999987654221110 012233444555555 56665431 12344
Q ss_pred hhccCCCCCCceEEEEecCCCCchhhhhhhhhHHHHhhHHHHHhhcCCCCCcceEEEeeeCCC-CCCCcccCccCccEEE
Q 038751 681 AHLEKKKNLIDLILIFNEREESDDEKASEEMNEEKEAKHEAVCEALRPPPDIKSLEIMVFKGR-TPSNWIGSLNKLKMLT 759 (915)
Q Consensus 681 ~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~p~~~~~l~~L~~L~ 759 (915)
..+..+++|++|++++|.. ........+..+++|+.|++.++... .++.....+++|++|+
T Consensus 287 ~~~~~~~~L~~L~Ls~~~l------------------~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~ 348 (592)
T 3ogk_B 287 ILFPFAAQIRKLDLLYALL------------------ETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLR 348 (592)
T ss_dssp GGGGGGGGCCEEEETTCCC------------------CHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEE
T ss_pred HHHhhcCCCcEEecCCCcC------------------CHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEE
Confidence 5567788999999998862 12223344677899999999844221 2333345789999999
Q ss_pred EcC----------cCCCCC--CCC-CCCCCCcceeeccccccceEeC-cccc-CCcccccccccc----cCCCc------
Q 038751 760 LNS----------FVKCEI--MPP-LGKLPSLEILRIWHMRSVKRVG-DEFL-GMEISDHIHIHG----TSSSS------ 814 (915)
Q Consensus 760 L~~----------~~~~~~--l~~-l~~Lp~L~~L~L~~~~~l~~~~-~~~~-~~~~l~~l~l~~----~~~~~------ 814 (915)
|++ |..... ++. ...+|+|++|++. |..+.... ..+. ...+++.+++.+ +..+.
T Consensus 349 L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~-~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~ 427 (592)
T 3ogk_B 349 IERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVY-VSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNG 427 (592)
T ss_dssp EECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEE-ESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHH
T ss_pred eecCccccccccccCccCHHHHHHHHhhCccCeEEEee-cCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHH
Confidence 995 544331 222 2458999999994 33343211 1111 245677787763 22222
Q ss_pred ---ccccCcccceeeecCccc-ccccccCCCCcccCcccceeecccCcccc--CCCcCCCCCCCcCeEeEcCCc
Q 038751 815 ---SVIAFPKLQKLELTGMDE-LEEWDFGNDDITIMPHIKSLYITYCEKLK--SLPELLLRSTTLESLTIFGVP 882 (915)
Q Consensus 815 ---~~~~f~~L~~L~l~~~~~-l~~~~~~~~~~~~lp~L~~L~l~~c~~L~--~lp~~l~~l~~L~~L~l~~c~ 882 (915)
....+++|+.|++++|.+ +..-.+..- ...+|+|+.|++.+|. +. .+|..+..+++|++|+|++|+
T Consensus 428 ~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~-~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~ 499 (592)
T 3ogk_B 428 VRSLLIGCKKLRRFAFYLRQGGLTDLGLSYI-GQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCC 499 (592)
T ss_dssp HHHHHHHCTTCCEEEEECCGGGCCHHHHHHH-HHSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCC
T ss_pred HHHHHHhCCCCCEEEEecCCCCccHHHHHHH-HHhCccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCC
Confidence 134589999999987654 221111100 1248899999999885 43 355556778999999999998
No 84
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.28 E-value=1.3e-11 Score=131.25 Aligned_cols=158 Identities=20% Similarity=0.163 Sum_probs=120.0
Q ss_pred hhccCCCCCCceEEEEecCCCCchhhhhhhhhHHHHhhHHHHHhhcCCCCCcceEEEeeeCCCCCCCcccCccCccEEEE
Q 038751 681 AHLEKKKNLIDLILIFNEREESDDEKASEEMNEEKEAKHEAVCEALRPPPDIKSLEIMVFKGRTPSNWIGSLNKLKMLTL 760 (915)
Q Consensus 681 ~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L 760 (915)
..+.++++|+.|+++.|.... +.....+++|+.|++++|....+|..+..+++|++|+|
T Consensus 49 ~~~~~l~~L~~L~L~~n~l~~---------------------~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l 107 (290)
T 1p9a_G 49 ATLMPYTRLTQLNLDRAELTK---------------------LQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDV 107 (290)
T ss_dssp GGGTTCTTCCEEECTTSCCCE---------------------EECCSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEEC
T ss_pred HHhhcCCCCCEEECCCCccCc---------------------ccCCCCCCcCCEEECCCCcCCcCchhhccCCCCCEEEC
Confidence 346677788888887765321 11125678899999999998888988889999999999
Q ss_pred cCcCCCCCCC-CCCCCCCcceeeccccccceEeCccccCCcccccccccccCCCcccccCcccceeeecCcccccccccC
Q 038751 761 NSFVKCEIMP-PLGKLPSLEILRIWHMRSVKRVGDEFLGMEISDHIHIHGTSSSSSVIAFPKLQKLELTGMDELEEWDFG 839 (915)
Q Consensus 761 ~~~~~~~~l~-~l~~Lp~L~~L~L~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~ 839 (915)
++|......+ .++.+++|++|++++|. ++.++... +..+++|+.|++.++ .+..++.
T Consensus 108 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~-l~~~~~~~-------------------~~~l~~L~~L~L~~N-~l~~l~~- 165 (290)
T 1p9a_G 108 SFNRLTSLPLGALRGLGELQELYLKGNE-LKTLPPGL-------------------LTPTPKLEKLSLANN-NLTELPA- 165 (290)
T ss_dssp CSSCCCCCCSSTTTTCTTCCEEECTTSC-CCCCCTTT-------------------TTTCTTCCEEECTTS-CCSCCCT-
T ss_pred CCCcCcccCHHHHcCCCCCCEEECCCCC-CCccChhh-------------------cccccCCCEEECCCC-cCCccCH-
Confidence 9885443332 37889999999999876 55555432 236789999999886 4555542
Q ss_pred CCCcccCcccceeecccCccccCCCcCCCCCCCcCeEeEcCCcc
Q 038751 840 NDDITIMPHIKSLYITYCEKLKSLPELLLRSTTLESLTIFGVPI 883 (915)
Q Consensus 840 ~~~~~~lp~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~c~~ 883 (915)
..+..+++|+.|++++| .+..+|.++..+++|+.|+++++|-
T Consensus 166 -~~~~~l~~L~~L~L~~N-~l~~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 166 -GLLNGLENLDTLLLQEN-SLYTIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp -TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCCCSEEECCSCCB
T ss_pred -HHhcCcCCCCEEECCCC-cCCccChhhcccccCCeEEeCCCCc
Confidence 22457899999999988 6889999999999999999998764
No 85
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.27 E-value=5.8e-12 Score=135.26 Aligned_cols=187 Identities=23% Similarity=0.266 Sum_probs=128.2
Q ss_pred CCCCceeEEEeccCCCCceeccccchhccccCCcceeeecCCCCCccccccccCCCcCCCcccCcccC----CcCCCCCC
Q 038751 553 FDAKTLHSLILVYSSNNQVAASPVLQGLFDQLTCLRALKIEDLPPTIKIPKGLENLIHLRYLKLSMVP----NGIERLTS 628 (915)
Q Consensus 553 ~~~~~Lr~L~l~~~~~~lrv~~~~lp~~i~~L~~Lr~L~l~~~~~~~~lP~~i~~L~~Lr~L~l~~lP----~~i~~L~~ 628 (915)
..+++|++|.+.++ .+..+| .+..+++|++|++++|... .+|. +.++++|++|+++... +.+..+++
T Consensus 38 ~~l~~L~~L~l~~~------~i~~l~-~~~~l~~L~~L~L~~n~i~-~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~ 108 (308)
T 1h6u_A 38 ADLDGITTLSAFGT------GVTTIE-GVQYLNNLIGLELKDNQIT-DLAP-LKNLTKITELELSGNPLKNVSAIAGLQS 108 (308)
T ss_dssp HHHHTCCEEECTTS------CCCCCT-TGGGCTTCCEEECCSSCCC-CCGG-GTTCCSCCEEECCSCCCSCCGGGTTCTT
T ss_pred HHcCCcCEEEeeCC------CccCch-hhhccCCCCEEEccCCcCC-CChh-HccCCCCCEEEccCCcCCCchhhcCCCC
Confidence 45778899998887 455666 5888999999999988776 6666 7888888888755321 12334444
Q ss_pred CCccCceeecccCCccCCCCcCCCCCcCccccccceeEcCccCCCChhhHhHhhccCCCCCCceEEEEecCCCCchhhhh
Q 038751 629 LRTLSEFAVARVGGKYSSKSCNLEGLRPLNHLRGFLQISGLGNVTDADEAKNAHLEKKKNLIDLILIFNEREESDDEKAS 708 (915)
Q Consensus 629 L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~ 708 (915)
|++|+ +.+.. +... ..+..+++|+.|+++.|....
T Consensus 109 L~~L~--------------------------------l~~n~-l~~~-----~~l~~l~~L~~L~l~~n~l~~------- 143 (308)
T 1h6u_A 109 IKTLD--------------------------------LTSTQ-ITDV-----TPLAGLSNLQVLYLDLNQITN------- 143 (308)
T ss_dssp CCEEE--------------------------------CTTSC-CCCC-----GGGTTCTTCCEEECCSSCCCC-------
T ss_pred CCEEE--------------------------------CCCCC-CCCc-----hhhcCCCCCCEEECCCCccCc-------
Confidence 44443 32211 1111 125677889999998875432
Q ss_pred hhhhHHHHhhHHHHHhhcCCCCCcceEEEeeeCCCCCCCcccCccCccEEEEcCcCCCCCCCCCCCCCCcceeecccccc
Q 038751 709 EEMNEEKEAKHEAVCEALRPPPDIKSLEIMVFKGRTPSNWIGSLNKLKMLTLNSFVKCEIMPPLGKLPSLEILRIWHMRS 788 (915)
Q Consensus 709 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~Lp~L~~L~L~~~~~ 788 (915)
...+..+++|+.|++++|....+|. +..+++|+.|++++|. ...++++..+++|++|++++|.
T Consensus 144 --------------~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~L~~N~- 206 (308)
T 1h6u_A 144 --------------ISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNK-ISDISPLASLPNLIEVHLKNNQ- 206 (308)
T ss_dssp --------------CGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGGGGGCTTCCEEECTTSC-
T ss_pred --------------CccccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCc-cCcChhhcCCCCCCEEEccCCc-
Confidence 1125567889999999988777765 7788999999998884 4456668889999999998876
Q ss_pred ceEeCccccCCcccccccccccCCCcccccCcccceeeecCcc
Q 038751 789 VKRVGDEFLGMEISDHIHIHGTSSSSSVIAFPKLQKLELTGMD 831 (915)
Q Consensus 789 l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~f~~L~~L~l~~~~ 831 (915)
+..++. +..+++|+.|++.+++
T Consensus 207 l~~~~~---------------------l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 207 ISDVSP---------------------LANTSNLFIVTLTNQT 228 (308)
T ss_dssp CCBCGG---------------------GTTCTTCCEEEEEEEE
T ss_pred cCcccc---------------------ccCCCCCCEEEccCCe
Confidence 444431 2367788888887754
No 86
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.27 E-value=2.6e-12 Score=138.35 Aligned_cols=195 Identities=18% Similarity=0.142 Sum_probs=117.5
Q ss_pred cceEEEEEEcccccc-Ccccc--CCCCceeEEEeccCCCCceeccccchhccccC-----CcceeeecCCCCCccccccc
Q 038751 533 EKLRHLMLVLGFWAK-FPFSI--FDAKTLHSLILVYSSNNQVAASPVLQGLFDQL-----TCLRALKIEDLPPTIKIPKG 604 (915)
Q Consensus 533 ~~~r~Lsl~~~~~~~-~~~~~--~~~~~Lr~L~l~~~~~~lrv~~~~lp~~i~~L-----~~Lr~L~l~~~~~~~~lP~~ 604 (915)
..+++|++++|.+.. .|..+ ..+++|++|.+.+| .+..+|..++.+ .+|++|++++|......|..
T Consensus 95 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N------~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~ 168 (312)
T 1wwl_A 95 SGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNV------SWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQ 168 (312)
T ss_dssp SCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESC------BCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTT
T ss_pred CCccEEEccCCcccchhHHHHHHhcCCCccEEEccCC------CCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHH
Confidence 456677777766653 44444 66677777777666 344445556655 67777777766665333355
Q ss_pred cCCCcCCCcccCcccC--------CcC--CCCCCCCccCceeecccCCccCCCCcCCCCCcCccccccceeEcCccCCCC
Q 038751 605 LENLIHLRYLKLSMVP--------NGI--ERLTSLRTLSEFAVARVGGKYSSKSCNLEGLRPLNHLRGFLQISGLGNVTD 674 (915)
Q Consensus 605 i~~L~~Lr~L~l~~lP--------~~i--~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~ 674 (915)
++++++|++|+++... ..+ +++++|++| .+.+.. +..
T Consensus 169 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L--------------------------------~L~~N~-l~~ 215 (312)
T 1wwl_A 169 VRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVL--------------------------------ALRNAG-MET 215 (312)
T ss_dssp CCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEE--------------------------------ECTTSC-CCC
T ss_pred hccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEE--------------------------------ECCCCc-Ccc
Confidence 6666666666654321 111 333333333 332211 111
Q ss_pred hhhHhHhhccCCCCCCceEEEEecCCCCchhhhhhhhhHHHHhhHHHHHhhcCCCCCcceEEEeeeCCCCCCCcccCccC
Q 038751 675 ADEAKNAHLEKKKNLIDLILIFNEREESDDEKASEEMNEEKEAKHEAVCEALRPPPDIKSLEIMVFKGRTPSNWIGSLNK 754 (915)
Q Consensus 675 ~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~ 754 (915)
........+.++++|+.|++++|...... ....+..+++|+.|++++|....+|.++. ++
T Consensus 216 ~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~------------------~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~ 275 (312)
T 1wwl_A 216 PSGVCSALAAARVQLQGLDLSHNSLRDAA------------------GAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AK 275 (312)
T ss_dssp HHHHHHHHHHTTCCCSEEECTTSCCCSSC------------------CCSCCCCCTTCCEEECTTSCCSSCCSSCC--SE
T ss_pred hHHHHHHHHhcCCCCCEEECCCCcCCccc------------------chhhhhhcCCCCEEECCCCccChhhhhcc--CC
Confidence 11222233456778888888877533200 01223446788999999888888888775 88
Q ss_pred ccEEEEcCcCCCCCCCCCCCCCCcceeeccccc
Q 038751 755 LKMLTLNSFVKCEIMPPLGKLPSLEILRIWHMR 787 (915)
Q Consensus 755 L~~L~L~~~~~~~~l~~l~~Lp~L~~L~L~~~~ 787 (915)
|++|+|++|.. ..+|.++.+++|++|++++++
T Consensus 276 L~~L~Ls~N~l-~~~p~~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 276 LSVLDLSYNRL-DRNPSPDELPQVGNLSLKGNP 307 (312)
T ss_dssp EEEEECCSSCC-CSCCCTTTSCEEEEEECTTCT
T ss_pred ceEEECCCCCC-CCChhHhhCCCCCEEeccCCC
Confidence 99999988843 444778888999999988875
No 87
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.25 E-value=8.7e-11 Score=121.51 Aligned_cols=198 Identities=12% Similarity=0.095 Sum_probs=119.8
Q ss_pred CccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 038751 171 SDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAII 250 (915)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 250 (915)
.+++||+.+++.+..++.... ..+.+.|+|++|+||||||+.+++.......+.. ........ ...+.
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~-----~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~------~~~~~~~~-~~~~~ 90 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA------TPCGVCDN-CREIE 90 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTC-----CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCS------SCCSCSHH-HHHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC------CCCcccHH-HHHHh
Confidence 469999999999999986432 2357899999999999999999874321111100 00000000 00110
Q ss_pred HHhh-----CCCCCcccHHHHHHHHHHH----hccCeEEEEEeCCCCCCccChhhhHHhhhcCCCCceEEEEcCchHH-H
Q 038751 251 EGLE-----GSLPNLRELNSLLEYIHTS----IKEKKFFLILDDVWPDDYSKWEPFHNCLMNGLCGSRILVTTRKETV-A 320 (915)
Q Consensus 251 ~~l~-----~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v-~ 320 (915)
.... .........+.+...+... ..+++.+||+||++..+...++.+...+.....+..+|+||+.... .
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~ 170 (250)
T 1njg_A 91 QGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 170 (250)
T ss_dssp TTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSC
T ss_pred ccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCC
Confidence 0000 0000111112222222111 1356799999999765556677777777766667888888876431 1
Q ss_pred h-hhcCcCeEeCCCCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCCCchHHHHHHhHh
Q 038751 321 R-MMESTDVISIKELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKGLPLAAKTIGSLL 384 (915)
Q Consensus 321 ~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~PLai~~~~~~l 384 (915)
. .......+++.+++.++..+++...+........ .+..+.|++.|+|.|..+..+...+
T Consensus 171 ~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~----~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 171 VTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE----PRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp HHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCCBC----HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 1 1222468999999999999999887643322111 2446778999999999988776543
No 88
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.24 E-value=1.4e-11 Score=134.89 Aligned_cols=232 Identities=16% Similarity=0.099 Sum_probs=141.0
Q ss_pred EEEEEEccccccCccccCCCCceeEEEeccCCCCceeccccchh-ccccCCcceeeecCCCCCccccccc-cCCCcCCCc
Q 038751 536 RHLMLVLGFWAKFPFSIFDAKTLHSLILVYSSNNQVAASPVLQG-LFDQLTCLRALKIEDLPPTIKIPKG-LENLIHLRY 613 (915)
Q Consensus 536 r~Lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~lrv~~~~lp~-~i~~L~~Lr~L~l~~~~~~~~lP~~-i~~L~~Lr~ 613 (915)
+.+..+++.++.+|..+ .+++++|.+.+| .++.+|. .|++|++|++|+|++|.....+|.. +.+|.+|+.
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N------~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~ 83 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLT------KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHE 83 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESC------CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCE
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCC------cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhh
Confidence 34566666777677655 367899999888 5677875 6899999999999998875456654 677877775
Q ss_pred cc------CcccCC-cCCCCCCCCccCceeecccCCccCCCCcCCCCCcCccccccceeEcCccCCCChhhHhHhhccCC
Q 038751 614 LK------LSMVPN-GIERLTSLRTLSEFAVARVGGKYSSKSCNLEGLRPLNHLRGFLQISGLGNVTDADEAKNAHLEKK 686 (915)
Q Consensus 614 L~------l~~lP~-~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~l 686 (915)
+. +..+|+ .+..+++|++|++..+..... .....+ ..
T Consensus 84 ~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~---------~~~~~~---------------------------~~ 127 (350)
T 4ay9_X 84 IRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHL---------PDVHKI---------------------------HS 127 (350)
T ss_dssp EEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSC---------CCCTTC---------------------------CB
T ss_pred hhcccCCcccccCchhhhhccccccccccccccccC---------Cchhhc---------------------------cc
Confidence 43 556654 467888888887765543220 000000 11
Q ss_pred CCCCceEEEEecCCCCchhhhhhhhhHHHHhhHHHHHhhcCC-CCCcceEEEeeeCCCCCCCcccCccCccEEEEcCcCC
Q 038751 687 KNLIDLILIFNEREESDDEKASEEMNEEKEAKHEAVCEALRP-PPDIKSLEIMVFKGRTPSNWIGSLNKLKMLTLNSFVK 765 (915)
Q Consensus 687 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~ 765 (915)
.++..|++..+...... ....+.. ...++.|++++|....+|.......+|++|.+.++..
T Consensus 128 ~~l~~l~l~~~~~i~~l------------------~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~ 189 (350)
T 4ay9_X 128 LQKVLLDIQDNINIHTI------------------ERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNN 189 (350)
T ss_dssp SSCEEEEEESCTTCCEE------------------CTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTT
T ss_pred chhhhhhhccccccccc------------------cccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCc
Confidence 12222333221110000 0001111 2346667777777666666555566778888877666
Q ss_pred CCCCCC--CCCCCCcceeeccccccceEeCccccCCcccccccccccCCCcccccCcccceeeecCcccccccccCCCCc
Q 038751 766 CEIMPP--LGKLPSLEILRIWHMRSVKRVGDEFLGMEISDHIHIHGTSSSSSVIAFPKLQKLELTGMDELEEWDFGNDDI 843 (915)
Q Consensus 766 ~~~l~~--l~~Lp~L~~L~L~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~ 843 (915)
.+.+|. ++.+++|++|+|+++. ++.+|. ..|.+|+.|.+.++.+++.++- +
T Consensus 190 l~~i~~~~f~~l~~L~~LdLs~N~-l~~lp~----------------------~~~~~L~~L~~l~~~~l~~lP~----l 242 (350)
T 4ay9_X 190 LEELPNDVFHGASGPVILDISRTR-IHSLPS----------------------YGLENLKKLRARSTYNLKKLPT----L 242 (350)
T ss_dssp CCCCCTTTTTTEECCSEEECTTSC-CCCCCS----------------------SSCTTCCEEECTTCTTCCCCCC----T
T ss_pred ccCCCHHHhccCcccchhhcCCCC-cCccCh----------------------hhhccchHhhhccCCCcCcCCC----c
Confidence 666664 5777888888887765 666553 2466666666666666666642 3
Q ss_pred ccCcccceeeccc
Q 038751 844 TIMPHIKSLYITY 856 (915)
Q Consensus 844 ~~lp~L~~L~l~~ 856 (915)
..|++|+.+++.+
T Consensus 243 ~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 243 EKLVALMEASLTY 255 (350)
T ss_dssp TTCCSCCEEECSC
T ss_pred hhCcChhhCcCCC
Confidence 3677777777654
No 89
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.24 E-value=6.4e-13 Score=145.01 Aligned_cols=237 Identities=16% Similarity=0.111 Sum_probs=139.3
Q ss_pred ceeEEEeccCCCCceeccccchhccccC--CcceeeecCCCCCccccccccCCCcCCCcccCccc-------CCcCCCCC
Q 038751 557 TLHSLILVYSSNNQVAASPVLQGLFDQL--TCLRALKIEDLPPTIKIPKGLENLIHLRYLKLSMV-------PNGIERLT 627 (915)
Q Consensus 557 ~Lr~L~l~~~~~~lrv~~~~lp~~i~~L--~~Lr~L~l~~~~~~~~lP~~i~~L~~Lr~L~l~~l-------P~~i~~L~ 627 (915)
.++++++.++. +. |..++.+ .+|++|++.++... ..+..+.++.+|++|+++.. |..+..++
T Consensus 48 ~~~~l~l~~~~------~~--~~~~~~~~~~~l~~L~l~~n~l~-~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~ 118 (336)
T 2ast_B 48 LWQTLDLTGKN------LH--PDVTGRLLSQGVIAFRCPRSFMD-QPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCS 118 (336)
T ss_dssp TSSEEECTTCB------CC--HHHHHHHHHTTCSEEECTTCEEC-SCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBC
T ss_pred hheeecccccc------CC--HHHHHhhhhccceEEEcCCcccc-ccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCC
Confidence 46677777652 22 5666777 78888888877655 34444556666666665431 12222333
Q ss_pred CCCccCceeecccCCccCCCCcCCCCCcCccccccceeEcCccCCCChhhHhHhhccCCCCCCceEEEEecCCCCchhhh
Q 038751 628 SLRTLSEFAVARVGGKYSSKSCNLEGLRPLNHLRGFLQISGLGNVTDADEAKNAHLEKKKNLIDLILIFNEREESDDEKA 707 (915)
Q Consensus 628 ~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~ 707 (915)
+|+ .|.+.+. .........+..+++|+.|++++|...
T Consensus 119 ~L~--------------------------------~L~L~~~----~l~~~~~~~l~~~~~L~~L~L~~~~~l------- 155 (336)
T 2ast_B 119 KLQ--------------------------------NLSLEGL----RLSDPIVNTLAKNSNLVRLNLSGCSGF------- 155 (336)
T ss_dssp CCS--------------------------------EEECTTC----BCCHHHHHHHTTCTTCSEEECTTCBSC-------
T ss_pred CCC--------------------------------EEeCcCc----ccCHHHHHHHhcCCCCCEEECCCCCCC-------
Confidence 333 3333332 112233445667888888888877321
Q ss_pred hhhhhHHHHhhHHHHHhhcCCCCCcceEEEeee-CCCC--CCCcccCcc-CccEEEEcCcC-CC--CCCC-CCCCCCCcc
Q 038751 708 SEEMNEEKEAKHEAVCEALRPPPDIKSLEIMVF-KGRT--PSNWIGSLN-KLKMLTLNSFV-KC--EIMP-PLGKLPSLE 779 (915)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~--~p~~~~~l~-~L~~L~L~~~~-~~--~~l~-~l~~Lp~L~ 779 (915)
....+...+..+++|+.|++.+| .... +|..+..++ +|++|+|++|. .. ..++ .++.+|+|+
T Consensus 156 ----------~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~ 225 (336)
T 2ast_B 156 ----------SEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLV 225 (336)
T ss_dssp ----------CHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCS
T ss_pred ----------CHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCC
Confidence 11122333445678888888888 5443 455666788 88888888874 22 2233 245788888
Q ss_pred eeeccccccceEeCccccCCcccccccccccCCCcccccCcccceeeecCcccccccccCCCCcccCcccceeecccCcc
Q 038751 780 ILRIWHMRSVKRVGDEFLGMEISDHIHIHGTSSSSSVIAFPKLQKLELTGMDELEEWDFGNDDITIMPHIKSLYITYCEK 859 (915)
Q Consensus 780 ~L~L~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~lp~L~~L~l~~c~~ 859 (915)
+|++++|..++.... ..+..+++|+.|++.+|..+....+ ..+..+|+|+.|++.+|
T Consensus 226 ~L~l~~~~~l~~~~~-------------------~~l~~l~~L~~L~l~~~~~~~~~~~--~~l~~~~~L~~L~l~~~-- 282 (336)
T 2ast_B 226 HLDLSDSVMLKNDCF-------------------QEFFQLNYLQHLSLSRCYDIIPETL--LELGEIPTLKTLQVFGI-- 282 (336)
T ss_dssp EEECTTCTTCCGGGG-------------------GGGGGCTTCCEEECTTCTTCCGGGG--GGGGGCTTCCEEECTTS--
T ss_pred EEeCCCCCcCCHHHH-------------------HHHhCCCCCCEeeCCCCCCCCHHHH--HHHhcCCCCCEEeccCc--
Confidence 888888764332111 0134678899999988864433222 12457889999999888
Q ss_pred ccCCCc-CCCCC-CCcCeEeEcCC
Q 038751 860 LKSLPE-LLLRS-TTLESLTIFGV 881 (915)
Q Consensus 860 L~~lp~-~l~~l-~~L~~L~l~~c 881 (915)
+|. .+..+ .+|+.|++++|
T Consensus 283 ---i~~~~~~~l~~~l~~L~l~~n 303 (336)
T 2ast_B 283 ---VPDGTLQLLKEALPHLQINCS 303 (336)
T ss_dssp ---SCTTCHHHHHHHSTTSEESCC
T ss_pred ---cCHHHHHHHHhhCcceEEecc
Confidence 443 23333 24677777544
No 90
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.23 E-value=3.3e-14 Score=162.69 Aligned_cols=320 Identities=15% Similarity=0.098 Sum_probs=178.7
Q ss_pred cceEEEEEEcccccc-Cccc-cCCCC----ceeEEEeccCCCCcee-ccccchhccccCCcceeeecCCCCCcccccccc
Q 038751 533 EKLRHLMLVLGFWAK-FPFS-IFDAK----TLHSLILVYSSNNQVA-ASPVLQGLFDQLTCLRALKIEDLPPTIKIPKGL 605 (915)
Q Consensus 533 ~~~r~Lsl~~~~~~~-~~~~-~~~~~----~Lr~L~l~~~~~~lrv-~~~~lp~~i~~L~~Lr~L~l~~~~~~~~lP~~i 605 (915)
..+++|+++++.+.. .+.. ...++ +|++|.+.+|. +.. ....+|..+.++++|++|++++|+....-+..+
T Consensus 56 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~--i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l 133 (461)
T 1z7x_W 56 PALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC--LTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLL 133 (461)
T ss_dssp TTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSC--CBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHH
T ss_pred CCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCC--CCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHH
Confidence 456666666665542 1111 11222 57777776663 110 112456777777777777777766542222222
Q ss_pred -----CCCcCCCcccCccc----------CCcCCCCCCCCccCceeecccCCccCCCCcCCCCCc-----Ccccccccee
Q 038751 606 -----ENLIHLRYLKLSMV----------PNGIERLTSLRTLSEFAVARVGGKYSSKSCNLEGLR-----PLNHLRGFLQ 665 (915)
Q Consensus 606 -----~~L~~Lr~L~l~~l----------P~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~L~-----~L~~L~~~L~ 665 (915)
..+.+|++|+++.. +..+..+++|++|++..+.... ..+..+. .+.+|+ .|.
T Consensus 134 ~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~-------~~~~~l~~~l~~~~~~L~-~L~ 205 (461)
T 1z7x_W 134 CEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE-------AGVRVLCQGLKDSPCQLE-ALK 205 (461)
T ss_dssp HHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHH-------HHHHHHHHHHHHSCCCCC-EEE
T ss_pred HHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcch-------HHHHHHHHHHhcCCCCce-EEE
Confidence 22456777775432 2334456777777665433211 0111111 122344 555
Q ss_pred EcCccCCCChhhHhHhhccCCCCCCceEEEEecCCCCchhhhhhhhhHHHHhhHHHHHhhc-CCCCCcceEEEeeeCCCC
Q 038751 666 ISGLGNVTDADEAKNAHLEKKKNLIDLILIFNEREESDDEKASEEMNEEKEAKHEAVCEAL-RPPPDIKSLEIMVFKGRT 744 (915)
Q Consensus 666 i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~ 744 (915)
+.+..--..........+..+++|+.|++++|.... . ....+...+ .++++|+.|++++|....
T Consensus 206 L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~----------~-----~~~~l~~~~~~~~~~L~~L~L~~n~l~~ 270 (461)
T 1z7x_W 206 LESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD----------V-----GMAELCPGLLHPSSRLRTLWIWECGITA 270 (461)
T ss_dssp CTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH----------H-----HHHHHHHHHTSTTCCCCEEECTTSCCCH
T ss_pred ccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCCh----------H-----HHHHHHHHHhcCCCCceEEECcCCCCCH
Confidence 655322111122345566778889999998875210 0 111222333 357899999999987665
Q ss_pred -----CCCcccCccCccEEEEcCcCCCCC-CCCC-----CCCCCcceeeccccccceE-----eCccccCCccccccccc
Q 038751 745 -----PSNWIGSLNKLKMLTLNSFVKCEI-MPPL-----GKLPSLEILRIWHMRSVKR-----VGDEFLGMEISDHIHIH 808 (915)
Q Consensus 745 -----~p~~~~~l~~L~~L~L~~~~~~~~-l~~l-----~~Lp~L~~L~L~~~~~l~~-----~~~~~~~~~~l~~l~l~ 808 (915)
+|..+..+++|++|+|++|..... +..+ ...++|++|++++|. +.. ++..+.....++.++++
T Consensus 271 ~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls 349 (461)
T 1z7x_W 271 KGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQIS 349 (461)
T ss_dssp HHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECC
T ss_pred HHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEcc
Confidence 566666789999999998853211 0011 234689999999886 332 23333345778889999
Q ss_pred ccCCCcc----cc-----cCcccceeeecCcccccccc--cCCCCcccCcccceeecccCccccC---------CCcCCC
Q 038751 809 GTSSSSS----VI-----AFPKLQKLELTGMDELEEWD--FGNDDITIMPHIKSLYITYCEKLKS---------LPELLL 868 (915)
Q Consensus 809 ~~~~~~~----~~-----~f~~L~~L~l~~~~~l~~~~--~~~~~~~~lp~L~~L~l~~c~~L~~---------lp~~l~ 868 (915)
+|..... +. ..++|+.|+++++. +.... ..+..+..+++|++|++++|+ +.. +|..
T Consensus 350 ~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~l~~N~-i~~~~~~~l~~~l~~~-- 425 (461)
T 1z7x_W 350 NNRLEDAGVRELCQGLGQPGSVLRVLWLADCD-VSDSSCSSLAATLLANHSLRELDLSNNC-LGDAGILQLVESVRQP-- 425 (461)
T ss_dssp SSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCCCCCEEECCSSS-CCHHHHHHHHHHHTST--
T ss_pred CCccccccHHHHHHHHcCCCCceEEEECCCCC-CChhhHHHHHHHHHhCCCccEEECCCCC-CCHHHHHHHHHHhccC--
Confidence 8865321 11 26799999999983 43210 001123468999999999995 332 3432
Q ss_pred CCCCcCeEeEcCCcc
Q 038751 869 RSTTLESLTIFGVPI 883 (915)
Q Consensus 869 ~l~~L~~L~l~~c~~ 883 (915)
.++|+.|.+.++..
T Consensus 426 -~~~L~~L~~~~~~~ 439 (461)
T 1z7x_W 426 -GCLLEQLVLYDIYW 439 (461)
T ss_dssp -TCCCCEEECTTCCC
T ss_pred -Ccchhheeeccccc
Confidence 34677777766543
No 91
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.22 E-value=3.5e-13 Score=150.09 Aligned_cols=131 Identities=15% Similarity=0.146 Sum_probs=72.4
Q ss_pred CCcceEEEeeeCCC--CCC---CcccCccCccEEEEcCcCCCC-----CCC-CCCCCCCcceeeccccccc-----eEeC
Q 038751 730 PDIKSLEIMVFKGR--TPS---NWIGSLNKLKMLTLNSFVKCE-----IMP-PLGKLPSLEILRIWHMRSV-----KRVG 793 (915)
Q Consensus 730 ~~L~~L~l~~~~~~--~~p---~~~~~l~~L~~L~L~~~~~~~-----~l~-~l~~Lp~L~~L~L~~~~~l-----~~~~ 793 (915)
++|++|++++|... .+| ..+..+++|++|+|++|.... .+| .+..+++|++|+|++|. + ..++
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~-l~~~g~~~l~ 237 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSALA 237 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCC-CCcHHHHHHH
Confidence 67777777777653 223 233466777777777774321 233 56677777777777765 3 2222
Q ss_pred ccccCCcccccccccccCCCcccccCcccceeeecCcccccccccC--CCCc--ccCcccceeecccCccccC-----CC
Q 038751 794 DEFLGMEISDHIHIHGTSSSSSVIAFPKLQKLELTGMDELEEWDFG--NDDI--TIMPHIKSLYITYCEKLKS-----LP 864 (915)
Q Consensus 794 ~~~~~~~~l~~l~l~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~--~~~~--~~lp~L~~L~l~~c~~L~~-----lp 864 (915)
.. +..+++|+.|+++++. +...... +..+ +.+++|+.|++++|. +.. +|
T Consensus 238 ~~--------------------l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~ 295 (386)
T 2ca6_A 238 IA--------------------LKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLK 295 (386)
T ss_dssp HH--------------------GGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHH
T ss_pred HH--------------------HccCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCc-CCHHHHHHHH
Confidence 21 2355666666666653 2221000 0001 136667777777663 443 66
Q ss_pred cCC-CCCCCcCeEeEcCCcc
Q 038751 865 ELL-LRSTTLESLTIFGVPI 883 (915)
Q Consensus 865 ~~l-~~l~~L~~L~l~~c~~ 883 (915)
..+ .++++|++|++++|+.
T Consensus 296 ~~l~~~l~~L~~L~l~~N~l 315 (386)
T 2ca6_A 296 TVIDEKMPDLLFLELNGNRF 315 (386)
T ss_dssp HHHHHHCTTCCEEECTTSBS
T ss_pred HHHHhcCCCceEEEccCCcC
Confidence 555 4466777777776643
No 92
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.21 E-value=1.6e-11 Score=129.64 Aligned_cols=197 Identities=19% Similarity=0.143 Sum_probs=106.7
Q ss_pred cceEEEEEEccccccCcc-ccCCCCceeEEEeccCCCCceeccccch-hccccCCcceeeecCCCCCccccccccCCCcC
Q 038751 533 EKLRHLMLVLGFWAKFPF-SIFDAKTLHSLILVYSSNNQVAASPVLQ-GLFDQLTCLRALKIEDLPPTIKIPKGLENLIH 610 (915)
Q Consensus 533 ~~~r~Lsl~~~~~~~~~~-~~~~~~~Lr~L~l~~~~~~lrv~~~~lp-~~i~~L~~Lr~L~l~~~~~~~~lP~~i~~L~~ 610 (915)
..+++|+++++.+...+. .+..+++|++|.+.+|. +..++ ..|+++.+|++|+++++......|..+.++.+
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~------l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 101 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE------IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 101 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCC------CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTT
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCc------CCccCHHHccCCcCCCEEECCCCccCccChhhhcCCcc
Confidence 456666666665554332 45556666666666552 33333 35566666666666666555233344555566
Q ss_pred CCcccCcc-----cCC-cCCCCCCCCccCceeecccCCccCCCCcCCCCCcCccccccceeEcCccCCCChhhHhHhhcc
Q 038751 611 LRYLKLSM-----VPN-GIERLTSLRTLSEFAVARVGGKYSSKSCNLEGLRPLNHLRGFLQISGLGNVTDADEAKNAHLE 684 (915)
Q Consensus 611 Lr~L~l~~-----lP~-~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~ 684 (915)
|++|+++. ++. .++++++|++|+ +.+-. +.. ...+..+.
T Consensus 102 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~--------------------------------l~~n~-l~~--~~l~~~~~ 146 (276)
T 2z62_A 102 LQKLVAVETNLASLENFPIGHLKTLKELN--------------------------------VAHNL-IQS--FKLPEYFS 146 (276)
T ss_dssp CCEEECTTSCCCCSTTCCCTTCTTCCEEE--------------------------------CCSSC-CCC--CCCCGGGG
T ss_pred ccEEECCCCCccccCchhcccCCCCCEEE--------------------------------CcCCc-cce--ecCchhhc
Confidence 66555322 221 233344444443 32210 000 00123456
Q ss_pred CCCCCCceEEEEecCCCCchhhhhhhhhHHHHhhHHHHHhhcCCCCCcc-eEEEeeeCCCCCCCcccCccCccEEEEcCc
Q 038751 685 KKKNLIDLILIFNEREESDDEKASEEMNEEKEAKHEAVCEALRPPPDIK-SLEIMVFKGRTPSNWIGSLNKLKMLTLNSF 763 (915)
Q Consensus 685 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~ 763 (915)
++++|+.|++++|..... ....+..+..++.|. .|++++|....+|.......+|+.|+|++|
T Consensus 147 ~l~~L~~L~Ls~N~l~~~----------------~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n 210 (276)
T 2z62_A 147 NLTNLEHLDLSSNKIQSI----------------YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTN 210 (276)
T ss_dssp GCTTCCEEECCSSCCCEE----------------CGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSS
T ss_pred cCCCCCEEECCCCCCCcC----------------CHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCC
Confidence 677888888877753320 001112222334444 788888877766655555568899999888
Q ss_pred CCCCCCCC--CCCCCCcceeeccccc
Q 038751 764 VKCEIMPP--LGKLPSLEILRIWHMR 787 (915)
Q Consensus 764 ~~~~~l~~--l~~Lp~L~~L~L~~~~ 787 (915)
.. ..+|. ++.+++|++|++++++
T Consensus 211 ~l-~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 211 QL-KSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp CC-SCCCTTTTTTCCSCCEEECCSSC
T ss_pred ce-eecCHhHhcccccccEEEccCCc
Confidence 63 34443 5788889999888776
No 93
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.20 E-value=3.7e-11 Score=119.71 Aligned_cols=145 Identities=18% Similarity=0.248 Sum_probs=101.4
Q ss_pred CCCcceEEEeeeCCCCCCCcccCccCccEEEEcCcCCCCCCCCCCCCCCcceeeccccccceE-eCccccCCcccccccc
Q 038751 729 PPDIKSLEIMVFKGRTPSNWIGSLNKLKMLTLNSFVKCEIMPPLGKLPSLEILRIWHMRSVKR-VGDEFLGMEISDHIHI 807 (915)
Q Consensus 729 ~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~Lp~L~~L~L~~~~~l~~-~~~~~~~~~~l~~l~l 807 (915)
+++|+.|+++++....+| .+..+++|++|++++| ....++.++.+++|++|++++|. +.. .+..+.....++.|++
T Consensus 43 l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n-~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLT-GIEYAHNIKDLTINNI-HATNYNPISGLSNLERLRIMGKD-VTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESC-CCSCCGGGTTCTTCCEEEEECTT-CBGGGSCCCTTCTTCCEEEC
T ss_pred cCCccEEeccCCCccChH-HHhcCCCCCEEEccCC-CCCcchhhhcCCCCCEEEeECCc-cCcccChhhcCCCCCCEEEe
Confidence 467999999999888888 5889999999999999 66777889999999999999976 433 4555555566666666
Q ss_pred cccCCCc----ccccCcccceeeecCcccccccccCCCCcccCcccceeecccCccccCCCcCCCCCCCcCeEeEcCCc
Q 038751 808 HGTSSSS----SVIAFPKLQKLELTGMDELEEWDFGNDDITIMPHIKSLYITYCEKLKSLPELLLRSTTLESLTIFGVP 882 (915)
Q Consensus 808 ~~~~~~~----~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~lp~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~c~ 882 (915)
++|.... .+..+++|+.|+++++..+..++ .+..+++|+.|++++| .+..+| .+..+++|++|++++++
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~----~l~~l~~L~~L~l~~n-~i~~~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM----PLKTLPELKSLNIQFD-GVHDYR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG----GGGGCSSCCEEECTTB-CCCCCT-TGGGCSSCCEEEECBC-
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCCccccH----hhcCCCCCCEEECCCC-CCcChH-HhccCCCCCEEEeeCcc
Confidence 6665432 34456667777776664344443 1446667777777666 455555 45566677777776664
No 94
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.19 E-value=2.9e-11 Score=130.02 Aligned_cols=86 Identities=16% Similarity=0.076 Sum_probs=60.4
Q ss_pred ccCCCCCCceEEEEecCCCCchhhhhhhhhHHHHhhHHHHHhhcCCCCCcceEEEeeeCCCCCCCcccCccCccEEEEcC
Q 038751 683 LEKKKNLIDLILIFNEREESDDEKASEEMNEEKEAKHEAVCEALRPPPDIKSLEIMVFKGRTPSNWIGSLNKLKMLTLNS 762 (915)
Q Consensus 683 l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~ 762 (915)
+.++++|+.|+|++|...... ...+..+..+++|++|++++|....+|.++. ++|+.|+|++
T Consensus 220 ~~~l~~L~~L~Ls~N~l~~~~----------------p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~ 281 (310)
T 4glp_A 220 AAAGVQPHSLDLSHNSLRATV----------------NPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSS 281 (310)
T ss_dssp HHHTCCCSSEECTTSCCCCCC----------------CSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCS
T ss_pred HhcCCCCCEEECCCCCCCccc----------------hhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCC
Confidence 466788889998887643200 0001223334789999999988888887663 7899999988
Q ss_pred cCCCCCCCCCCCCCCcceeeccccc
Q 038751 763 FVKCEIMPPLGKLPSLEILRIWHMR 787 (915)
Q Consensus 763 ~~~~~~l~~l~~Lp~L~~L~L~~~~ 787 (915)
|. +..+|.+..+|+|++|++++++
T Consensus 282 N~-l~~~~~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 282 NR-LNRAPQPDELPEVDNLTLDGNP 305 (310)
T ss_dssp CC-CCSCCCTTSCCCCSCEECSSTT
T ss_pred Cc-CCCCchhhhCCCccEEECcCCC
Confidence 84 4455667888999999998876
No 95
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.19 E-value=3.3e-11 Score=126.73 Aligned_cols=189 Identities=20% Similarity=0.197 Sum_probs=119.7
Q ss_pred ceEEEEEEccccccCccccCCCCceeEEEeccCCCCceeccccch-hccccCCcceeeecCCCCCccccccc-cCCCcCC
Q 038751 534 KLRHLMLVLGFWAKFPFSIFDAKTLHSLILVYSSNNQVAASPVLQ-GLFDQLTCLRALKIEDLPPTIKIPKG-LENLIHL 611 (915)
Q Consensus 534 ~~r~Lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~lrv~~~~lp-~~i~~L~~Lr~L~l~~~~~~~~lP~~-i~~L~~L 611 (915)
..+.++++++.+..+|..+. ++|+.|.+.++ .+..+| ..|+++.+|++|+++++... .+|.. +.++++|
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n------~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L 87 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSN------KLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNL 87 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCSS------CCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTC
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcCC------CCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCC
Confidence 45678887777776665544 67889988887 345555 47888999999999888776 66665 4778888
Q ss_pred CcccCc-----ccCCc-CCCCCCCCccCceeecccCCccCCCCcCCCCCcCccccccceeEcCccCCCChhhHhHhhccC
Q 038751 612 RYLKLS-----MVPNG-IERLTSLRTLSEFAVARVGGKYSSKSCNLEGLRPLNHLRGFLQISGLGNVTDADEAKNAHLEK 685 (915)
Q Consensus 612 r~L~l~-----~lP~~-i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~ 685 (915)
++|+++ .+|.. +..+++|++|++..+... ......+.+
T Consensus 88 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~------------------------------------~~~~~~~~~ 131 (270)
T 2o6q_A 88 ETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLK------------------------------------SLPPRVFDS 131 (270)
T ss_dssp CEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCC------------------------------------CCCTTTTTT
T ss_pred CEEECCCCcCCcCCHhHcccccCCCEEECCCCccC------------------------------------eeCHHHhCc
Confidence 888744 33332 345555555544321110 001122455
Q ss_pred CCCCCceEEEEecCCCCchhhhhhhhhHHHHhhHHHHHhhcCCCCCcceEEEeeeCCCCCCC-cccCccCccEEEEcCcC
Q 038751 686 KKNLIDLILIFNEREESDDEKASEEMNEEKEAKHEAVCEALRPPPDIKSLEIMVFKGRTPSN-WIGSLNKLKMLTLNSFV 764 (915)
Q Consensus 686 l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~-~~~~l~~L~~L~L~~~~ 764 (915)
+++|+.|+++.|..... ....+..+++|+.|++++|....+|. .+..+++|++|+|++|.
T Consensus 132 l~~L~~L~Ls~n~l~~~-------------------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 192 (270)
T 2o6q_A 132 LTKLTYLSLGYNELQSL-------------------PKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQ 192 (270)
T ss_dssp CTTCCEEECCSSCCCCC-------------------CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CcCCCEEECCCCcCCcc-------------------CHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCc
Confidence 66777777776643210 01224556778888888777666654 46677888888888774
Q ss_pred CCCCCCC--CCCCCCcceeeccccc
Q 038751 765 KCEIMPP--LGKLPSLEILRIWHMR 787 (915)
Q Consensus 765 ~~~~l~~--l~~Lp~L~~L~L~~~~ 787 (915)
.. .+|. +..+++|+.|+|++++
T Consensus 193 l~-~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 193 LK-RVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp CS-CCCTTTTTTCTTCCEEECCSSC
T ss_pred CC-cCCHHHhccccCCCEEEecCCC
Confidence 33 3433 6678888888887765
No 96
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.18 E-value=2.2e-11 Score=128.66 Aligned_cols=155 Identities=20% Similarity=0.180 Sum_probs=98.9
Q ss_pred ccCCCCCCceEEEEecCCCCchhhhhhhhhHHHHhhHHHHHhhcCCCCCcceEEEeeeCCCCCCC-cccCccCccEEEEc
Q 038751 683 LEKKKNLIDLILIFNEREESDDEKASEEMNEEKEAKHEAVCEALRPPPDIKSLEIMVFKGRTPSN-WIGSLNKLKMLTLN 761 (915)
Q Consensus 683 l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~-~~~~l~~L~~L~L~ 761 (915)
+.++++|+.|++++|.... .....+..+++|+.|++.+|....++. .++.+++|++|+++
T Consensus 72 ~~~l~~L~~L~L~~n~l~~-------------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 132 (276)
T 2z62_A 72 YQSLSHLSTLILTGNPIQS-------------------LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVA 132 (276)
T ss_dssp TTTCTTCCEEECTTCCCCE-------------------ECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECC
T ss_pred ccCCcCCCEEECCCCccCc-------------------cChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECc
Confidence 4556667777776664221 012345566778888887777666544 56778888888888
Q ss_pred CcCCCC-CCC-CCCCCCCcceeeccccccceEeCccccCCcccccccccccCCCcccccCcccc----eeeecCcccccc
Q 038751 762 SFVKCE-IMP-PLGKLPSLEILRIWHMRSVKRVGDEFLGMEISDHIHIHGTSSSSSVIAFPKLQ----KLELTGMDELEE 835 (915)
Q Consensus 762 ~~~~~~-~l~-~l~~Lp~L~~L~L~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~f~~L~----~L~l~~~~~l~~ 835 (915)
+|.... .+| .++.+++|++|++++|. ++.++... +..+++|+ .|+++++. +..
T Consensus 133 ~n~l~~~~l~~~~~~l~~L~~L~Ls~N~-l~~~~~~~-------------------~~~l~~L~~l~l~L~ls~n~-l~~ 191 (276)
T 2z62_A 133 HNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTD-------------------LRVLHQMPLLNLSLDLSLNP-MNF 191 (276)
T ss_dssp SSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGG-------------------GHHHHTCTTCCEEEECCSSC-CCE
T ss_pred CCccceecCchhhccCCCCCEEECCCCC-CCcCCHHH-------------------hhhhhhccccceeeecCCCc-ccc
Confidence 775433 233 46778888888888775 55554321 12344444 67776653 433
Q ss_pred cccCCCCcccCcccceeecccCccccCCCcC-CCCCCCcCeEeEcCC
Q 038751 836 WDFGNDDITIMPHIKSLYITYCEKLKSLPEL-LLRSTTLESLTIFGV 881 (915)
Q Consensus 836 ~~~~~~~~~~lp~L~~L~l~~c~~L~~lp~~-l~~l~~L~~L~l~~c 881 (915)
+... ....++|+.|++++| .+..+|.. +..+++|++|+++++
T Consensus 192 ~~~~---~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 192 IQPG---AFKEIRLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp ECTT---SSCSCCEEEEECCSS-CCSCCCTTTTTTCCSCCEEECCSS
T ss_pred cCcc---ccCCCcccEEECCCC-ceeecCHhHhcccccccEEEccCC
Confidence 3321 224558999999988 57888865 577999999999953
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.17 E-value=7.5e-11 Score=129.12 Aligned_cols=233 Identities=15% Similarity=0.046 Sum_probs=140.3
Q ss_pred eEEEeccCCCCceeccccchhccccCCcceeeecCCCCCccccccc-cCCCcCCCcccCcc------cCCc-CCCCCCCC
Q 038751 559 HSLILVYSSNNQVAASPVLQGLFDQLTCLRALKIEDLPPTIKIPKG-LENLIHLRYLKLSM------VPNG-IERLTSLR 630 (915)
Q Consensus 559 r~L~l~~~~~~lrv~~~~lp~~i~~L~~Lr~L~l~~~~~~~~lP~~-i~~L~~Lr~L~l~~------lP~~-i~~L~~L~ 630 (915)
+++...++ .++.+|..| ..+|++|+|+++.+. .+|.. +.+|++|++|+++. +|.+ +.+|++|+
T Consensus 12 ~~v~C~~~------~Lt~iP~~l--~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~ 82 (350)
T 4ay9_X 12 RVFLCQES------KVTEIPSDL--PRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLH 82 (350)
T ss_dssp TEEEEEST------TCCSCCTTC--CTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCC
T ss_pred CEEEecCC------CCCccCcCc--CCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhh
Confidence 45555554 467788766 468999999998877 77764 67788888887543 2221 23333333
Q ss_pred ccCceeecccCCccCCCCcCCCCCcCccccccceeEcCccCCCChhhHhHhhccCCCCCCceEEEEecCCCCchhhhhhh
Q 038751 631 TLSEFAVARVGGKYSSKSCNLEGLRPLNHLRGFLQISGLGNVTDADEAKNAHLEKKKNLIDLILIFNEREESDDEKASEE 710 (915)
Q Consensus 631 ~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~ 710 (915)
++..... ..+ ....+..+.++++|+.|+++.|......
T Consensus 83 ~~l~~~~-----------------------------N~l------~~l~~~~f~~l~~L~~L~l~~n~l~~~~------- 120 (350)
T 4ay9_X 83 EIRIEKA-----------------------------NNL------LYINPEAFQNLPNLQYLLISNTGIKHLP------- 120 (350)
T ss_dssp EEEEEEE-----------------------------TTC------CEECTTSBCCCTTCCEEEEEEECCSSCC-------
T ss_pred hhhcccC-----------------------------Ccc------cccCchhhhhccccccccccccccccCC-------
Confidence 3211100 000 0111223566677788888777532100
Q ss_pred hhHHHHhhHHHHHhhcCCCCCcceEEEeeeC-CCCCC-CcccCc-cCccEEEEcCcCCCCCCCCCCCCCCcceeeccccc
Q 038751 711 MNEEKEAKHEAVCEALRPPPDIKSLEIMVFK-GRTPS-NWIGSL-NKLKMLTLNSFVKCEIMPPLGKLPSLEILRIWHMR 787 (915)
Q Consensus 711 ~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~p-~~~~~l-~~L~~L~L~~~~~~~~l~~l~~Lp~L~~L~L~~~~ 787 (915)
........++..|++.++. ...+| ..+..+ ..|+.|+|++|......+.....++|+.|.+.+++
T Consensus 121 ------------~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n 188 (350)
T 4ay9_X 121 ------------DVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNN 188 (350)
T ss_dssp ------------CCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCT
T ss_pred ------------chhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCC
Confidence 0011223345556665532 22232 233333 35677777766433322334455677777777666
Q ss_pred cceEeCccccCCcccccccccccCCCcccccCcccceeeecCcccccccccCCCCcccCcccceeecccCccccCCCcCC
Q 038751 788 SVKRVGDEFLGMEISDHIHIHGTSSSSSVIAFPKLQKLELTGMDELEEWDFGNDDITIMPHIKSLYITYCEKLKSLPELL 867 (915)
Q Consensus 788 ~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~lp~L~~L~l~~c~~L~~lp~~l 867 (915)
.++.++.+.+ ..+++|+.|+++++ .++.++. ..|.+|+.|.+.+|..++.+|. +
T Consensus 189 ~l~~i~~~~f-------------------~~l~~L~~LdLs~N-~l~~lp~-----~~~~~L~~L~~l~~~~l~~lP~-l 242 (350)
T 4ay9_X 189 NLEELPNDVF-------------------HGASGPVILDISRT-RIHSLPS-----YGLENLKKLRARSTYNLKKLPT-L 242 (350)
T ss_dssp TCCCCCTTTT-------------------TTEECCSEEECTTS-CCCCCCS-----SSCTTCCEEECTTCTTCCCCCC-T
T ss_pred cccCCCHHHh-------------------ccCcccchhhcCCC-CcCccCh-----hhhccchHhhhccCCCcCcCCC-c
Confidence 6666665432 47889999999987 4666653 2688999999999999999995 7
Q ss_pred CCCCCcCeEeEcC
Q 038751 868 LRSTTLESLTIFG 880 (915)
Q Consensus 868 ~~l~~L~~L~l~~ 880 (915)
..+++|+.+++.+
T Consensus 243 ~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 243 EKLVALMEASLTY 255 (350)
T ss_dssp TTCCSCCEEECSC
T ss_pred hhCcChhhCcCCC
Confidence 8899999999965
No 98
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.16 E-value=7.6e-11 Score=121.54 Aligned_cols=107 Identities=11% Similarity=-0.028 Sum_probs=69.2
Q ss_pred CCCCCcc---eEEEeee-CCCCCC-CcccCccCcc-EEEEcCcCCCCCCCC-CCCCCCcceeeccccccceEeCccccCC
Q 038751 727 RPPPDIK---SLEIMVF-KGRTPS-NWIGSLNKLK-MLTLNSFVKCEIMPP-LGKLPSLEILRIWHMRSVKRVGDEFLGM 799 (915)
Q Consensus 727 ~~~~~L~---~L~l~~~-~~~~~p-~~~~~l~~L~-~L~L~~~~~~~~l~~-l~~Lp~L~~L~L~~~~~l~~~~~~~~~~ 799 (915)
..+++|+ .|++++| ....+| .++..+++|+ .|++++|... .+|. ....++|++|++++|..++.++...+
T Consensus 124 ~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~-- 200 (239)
T 2xwt_C 124 TKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAF-- 200 (239)
T ss_dssp TTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTT--
T ss_pred ccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHh--
Confidence 3444454 7777777 555554 3467788888 8888877543 4443 23337889999988865777765432
Q ss_pred cccccccccccCCCcccccC-cccceeeecCcccccccccCCCCcccCcccceeecccCcc
Q 038751 800 EISDHIHIHGTSSSSSVIAF-PKLQKLELTGMDELEEWDFGNDDITIMPHIKSLYITYCEK 859 (915)
Q Consensus 800 ~~l~~l~l~~~~~~~~~~~f-~~L~~L~l~~~~~l~~~~~~~~~~~~lp~L~~L~l~~c~~ 859 (915)
..+ ++|+.|++++. .+..++.. .|++|+.|.+.+|..
T Consensus 201 -----------------~~l~~~L~~L~l~~N-~l~~l~~~-----~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 201 -----------------GGVYSGPSLLDVSQT-SVTALPSK-----GLEHLKELIARNTWT 238 (239)
T ss_dssp -----------------TTCSBCCSEEECTTC-CCCCCCCT-----TCTTCSEEECTTC--
T ss_pred -----------------hccccCCcEEECCCC-ccccCChh-----HhccCceeeccCccC
Confidence 255 78888888774 35444321 678888888887754
No 99
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.16 E-value=6.8e-10 Score=112.90 Aligned_cols=185 Identities=15% Similarity=0.042 Sum_probs=116.4
Q ss_pred CccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCC-eEEEEEeCCCCCHHHHHHHH
Q 038751 171 SDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFD-KRIWVCVSDPFDEFRIAKAI 249 (915)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i 249 (915)
.+++|++..++.+.+++... ..+.+.|+|++|+|||++|+.+++... ...+. ..+.+..+.......+...+
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERK------NIPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGIDVVRHKI 89 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTT------CCCCEEEECSTTSSHHHHHHHHHHHHH-GGGGGGGEEEEETTCTTCHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHHh-ccccccceEEeccccccChHHHHHHH
Confidence 46899999999999999643 223489999999999999999987421 11121 23344444333322222111
Q ss_pred HHHhhCCCCCcccHHHHHHHHHHHhccCeEEEEEeCCCCCCccChhhhHHhhhcCCCCceEEEEcCchHH-H-hhhcCcC
Q 038751 250 IEGLEGSLPNLRELNSLLEYIHTSIKEKKFFLILDDVWPDDYSKWEPFHNCLMNGLCGSRILVTTRKETV-A-RMMESTD 327 (915)
Q Consensus 250 ~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v-~-~~~~~~~ 327 (915)
..+..... ...+++.+||+||++......++.+...+.....+.++|+||+.... . .......
T Consensus 90 -~~~~~~~~--------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~ 154 (226)
T 2chg_A 90 -KEFARTAP--------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCA 154 (226)
T ss_dssp -HHHHTSCC--------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSE
T ss_pred -HHHhcccC--------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCc
Confidence 11111000 01257889999999765555566677777666667888988876531 1 1122234
Q ss_pred eEeCCCCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCCCchHHHHHH
Q 038751 328 VISIKELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKGLPLAAKTIG 381 (915)
Q Consensus 328 ~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~PLai~~~~ 381 (915)
.+++.+++.++..+++.+.+........ .+..+.|++.++|.|..+..+.
T Consensus 155 ~i~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~~l~~~~~g~~r~l~~~l 204 (226)
T 2chg_A 155 VFRFKPVPKEAMKKRLLEICEKEGVKIT----EDGLEALIYISGGDFRKAINAL 204 (226)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHTCCBC----HHHHHHHHHHHTTCHHHHHHHH
T ss_pred eeecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHH
Confidence 8999999999999999887642221111 2345678889999999655443
No 100
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.15 E-value=3.5e-11 Score=127.83 Aligned_cols=91 Identities=19% Similarity=0.078 Sum_probs=49.3
Q ss_pred cceEEEEEEccccccCccccCCCCceeEEEeccCCCCceeccccc-hhccccCCcceeeecCCCCCccccccccCCCcCC
Q 038751 533 EKLRHLMLVLGFWAKFPFSIFDAKTLHSLILVYSSNNQVAASPVL-QGLFDQLTCLRALKIEDLPPTIKIPKGLENLIHL 611 (915)
Q Consensus 533 ~~~r~Lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~lrv~~~~l-p~~i~~L~~Lr~L~l~~~~~~~~lP~~i~~L~~L 611 (915)
..++.+++.++.+..+|..+. ++++.|.+.++. +..+ |..|.++.+|++|+++++... .+|.. +.+.+|
T Consensus 10 ~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~------l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~-~~l~~L 79 (290)
T 1p9a_G 10 ASHLEVNCDKRNLTALPPDLP--KDTTILHLSENL------LYTFSLATLMPYTRLTQLNLDRAELT-KLQVD-GTLPVL 79 (290)
T ss_dssp TTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSC------CSEEEGGGGTTCTTCCEEECTTSCCC-EEECC-SCCTTC
T ss_pred CCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCc------CCccCHHHhhcCCCCCEEECCCCccC-cccCC-CCCCcC
Confidence 445666666666555554443 466666666663 3322 455666666777776666655 44443 555566
Q ss_pred CcccC-----cccCCcCCCCCCCCccC
Q 038751 612 RYLKL-----SMVPNGIERLTSLRTLS 633 (915)
Q Consensus 612 r~L~l-----~~lP~~i~~L~~L~~L~ 633 (915)
++|++ ..+|..+..+++|++|+
T Consensus 80 ~~L~Ls~N~l~~l~~~~~~l~~L~~L~ 106 (290)
T 1p9a_G 80 GTLDLSHNQLQSLPLLGQTLPALTVLD 106 (290)
T ss_dssp CEEECCSSCCSSCCCCTTTCTTCCEEE
T ss_pred CEEECCCCcCCcCchhhccCCCCCEEE
Confidence 66653 23444444444444443
No 101
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.15 E-value=6e-13 Score=157.48 Aligned_cols=316 Identities=14% Similarity=0.068 Sum_probs=164.3
Q ss_pred cceEEEEEEcccccc-----CccccCCCCceeEEEeccCCCCceeccccchhccccCCcceeeecCCCCCccccccccCC
Q 038751 533 EKLRHLMLVLGFWAK-----FPFSIFDAKTLHSLILVYSSNNQVAASPVLQGLFDQLTCLRALKIEDLPPTIKIPKGLEN 607 (915)
Q Consensus 533 ~~~r~Lsl~~~~~~~-----~~~~~~~~~~Lr~L~l~~~~~~lrv~~~~lp~~i~~L~~Lr~L~l~~~~~~~~lP~~i~~ 607 (915)
..+++|++.++.+.. ++.....+++|++|.+.++.. .+....++..+.++++|++|++++|.....+|..+.+
T Consensus 156 ~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~--~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~ 233 (594)
T 2p1m_B 156 RNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLAS--EVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQR 233 (594)
T ss_dssp TTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCS--CCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHH
T ss_pred CCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCC--cCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhc
Confidence 456667666655332 122233566777777766531 0111223334455677777777776443356666677
Q ss_pred CcCCCcccCccc------------CCcCCCCCCCCccC-ceeecccCCccCCCCcCCCCC-cCccccccceeEcCccCCC
Q 038751 608 LIHLRYLKLSMV------------PNGIERLTSLRTLS-EFAVARVGGKYSSKSCNLEGL-RPLNHLRGFLQISGLGNVT 673 (915)
Q Consensus 608 L~~Lr~L~l~~l------------P~~i~~L~~L~~L~-~~~~~~~~~~~~~~~~~l~~L-~~L~~L~~~L~i~~l~~~~ 673 (915)
+++|++|++... +..+.++++|+.|. ..... ...+..+ ..+++|+ .|.+.+.. +.
T Consensus 234 ~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~---------~~~l~~~~~~~~~L~-~L~L~~~~-l~ 302 (594)
T 2p1m_B 234 APQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAV---------PAYLPAVYSVCSRLT-TLNLSYAT-VQ 302 (594)
T ss_dssp CTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCC---------GGGGGGGHHHHTTCC-EEECTTCC-CC
T ss_pred CCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccc---------hhhHHHHHHhhCCCC-EEEccCCC-CC
Confidence 777777764322 22455666666662 11111 1111111 1334444 56665543 22
Q ss_pred ChhhHhHhhccCCCCCCceEEEEecCCCCchhhhhhhhhHHHHhhHHHHHhhcCCCCCcceEEEeeeC------CCCCC-
Q 038751 674 DADEAKNAHLEKKKNLIDLILIFNEREESDDEKASEEMNEEKEAKHEAVCEALRPPPDIKSLEIMVFK------GRTPS- 746 (915)
Q Consensus 674 ~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~------~~~~p- 746 (915)
.......+.++++|+.|+++.|. ....+......+++|+.|++.++. ...+.
T Consensus 303 --~~~l~~~~~~~~~L~~L~l~~~~-------------------~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~ 361 (594)
T 2p1m_B 303 --SYDLVKLLCQCPKLQRLWVLDYI-------------------EDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTE 361 (594)
T ss_dssp --HHHHHHHHTTCTTCCEEEEEGGG-------------------HHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCH
T ss_pred --HHHHHHHHhcCCCcCEEeCcCcc-------------------CHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCH
Confidence 12233345677888888888652 111111112235778888885531 01111
Q ss_pred ----CcccCccCccEEEEcCcCCCC-CCCCCC-CCCCcceeecc-----ccccceEeCcc------ccCCcccccccccc
Q 038751 747 ----NWIGSLNKLKMLTLNSFVKCE-IMPPLG-KLPSLEILRIW-----HMRSVKRVGDE------FLGMEISDHIHIHG 809 (915)
Q Consensus 747 ----~~~~~l~~L~~L~L~~~~~~~-~l~~l~-~Lp~L~~L~L~-----~~~~l~~~~~~------~~~~~~l~~l~l~~ 809 (915)
.....+++|++|.+..+.... .+..++ .+|+|+.|++. +|..++..+.. +.....++.|++++
T Consensus 362 ~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~ 441 (594)
T 2p1m_B 362 QGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG 441 (594)
T ss_dssp HHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS
T ss_pred HHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC
Confidence 111146778888554432211 111222 47788888887 45555533211 22344667777755
Q ss_pred cCCCc---ccc-cCcccceeeecCcccccccccCCCCcccCcccceeecccCccccC-CCcCCCCCCCcCeEeEcCCcch
Q 038751 810 TSSSS---SVI-AFPKLQKLELTGMDELEEWDFGNDDITIMPHIKSLYITYCEKLKS-LPELLLRSTTLESLTIFGVPIV 884 (915)
Q Consensus 810 ~~~~~---~~~-~f~~L~~L~l~~~~~l~~~~~~~~~~~~lp~L~~L~l~~c~~L~~-lp~~l~~l~~L~~L~l~~c~~l 884 (915)
+-... .+. .+++|+.|++.++. +.......- ...+|+|+.|++++|+.-.. ++..+..+++|++|++++|+..
T Consensus 442 ~l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~~~~~l-~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 442 LLTDKVFEYIGTYAKKMEMLSVAFAG-DSDLGMHHV-LSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp SCCHHHHHHHHHHCTTCCEEEEESCC-SSHHHHHHH-HHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred cccHHHHHHHHHhchhccEeeccCCC-CcHHHHHHH-HhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 21111 111 37889999998874 322111000 13578999999999975222 2234456789999999999773
No 102
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.15 E-value=3.9e-11 Score=126.30 Aligned_cols=192 Identities=17% Similarity=0.177 Sum_probs=111.3
Q ss_pred cceEEEEEEccccccCccccCCCCceeEEEeccCCCCceeccccchhccccCCcceeeecCCCCCcccccc-ccCCCcCC
Q 038751 533 EKLRHLMLVLGFWAKFPFSIFDAKTLHSLILVYSSNNQVAASPVLQGLFDQLTCLRALKIEDLPPTIKIPK-GLENLIHL 611 (915)
Q Consensus 533 ~~~r~Lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~lrv~~~~lp~~i~~L~~Lr~L~l~~~~~~~~lP~-~i~~L~~L 611 (915)
..++.|.+.++.+.. ...+..+++|++|.+.+|. +..++ .++++++|++|++++|... .+|. .+.++.+|
T Consensus 41 ~~L~~L~l~~~~i~~-~~~l~~l~~L~~L~l~~n~------l~~~~-~l~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L 111 (272)
T 3rfs_A 41 NSIDQIIANNSDIKS-VQGIQYLPNVRYLALGGNK------LHDIS-ALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNL 111 (272)
T ss_dssp TTCCEEECTTSCCCC-CTTGGGCTTCCEEECTTSC------CCCCG-GGTTCTTCCEEECTTSCCC-CCCTTTTTTCTTC
T ss_pred cceeeeeeCCCCccc-ccccccCCCCcEEECCCCC------CCCch-hhcCCCCCCEEECCCCccC-ccChhHhcCCcCC
Confidence 567777777777663 3356777888888887773 44443 6778888888888877766 4443 35777777
Q ss_pred CcccCc-----ccCCc-CCCCCCCCccCceeecccCCccCCCCcCCCCCcCccccccceeEcCccCCCChhhHhHhhccC
Q 038751 612 RYLKLS-----MVPNG-IERLTSLRTLSEFAVARVGGKYSSKSCNLEGLRPLNHLRGFLQISGLGNVTDADEAKNAHLEK 685 (915)
Q Consensus 612 r~L~l~-----~lP~~-i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~ 685 (915)
++|+++ .+|.. ++.+++|++|++..+... ......+.+
T Consensus 112 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~------------------------------------~~~~~~~~~ 155 (272)
T 3rfs_A 112 KELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ------------------------------------SLPKGVFDK 155 (272)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC------------------------------------CCCTTTTTT
T ss_pred CEEECCCCcCCccCHHHhccCCCCCEEECCCCccC------------------------------------ccCHHHhcc
Confidence 777743 33332 345555555543321100 000112345
Q ss_pred CCCCCceEEEEecCCCCchhhhhhhhhHHHHhhHHHHHhhcCCCCCcceEEEeeeCCCCCC-CcccCccCccEEEEcCcC
Q 038751 686 KKNLIDLILIFNEREESDDEKASEEMNEEKEAKHEAVCEALRPPPDIKSLEIMVFKGRTPS-NWIGSLNKLKMLTLNSFV 764 (915)
Q Consensus 686 l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p-~~~~~l~~L~~L~L~~~~ 764 (915)
+++|+.|+++.|.... .....+..+++|+.|++.+|....+| .++..+++|+.|+|++|.
T Consensus 156 l~~L~~L~l~~n~l~~-------------------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 156 LTNLTELDLSYNQLQS-------------------LPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp CTTCCEEECCSSCCCC-------------------CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CccCCEEECCCCCcCc-------------------cCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCC
Confidence 5666677766664221 00122445667777777777666554 345677777777777763
Q ss_pred CCCCCCCCCCCCCcceeeccccccceEeCc
Q 038751 765 KCEIMPPLGKLPSLEILRIWHMRSVKRVGD 794 (915)
Q Consensus 765 ~~~~l~~l~~Lp~L~~L~L~~~~~l~~~~~ 794 (915)
. .+.+|+|++|+++.+.....+|.
T Consensus 217 ~------~~~~~~l~~l~~~~n~~~g~ip~ 240 (272)
T 3rfs_A 217 W------DCTCPGIRYLSEWINKHSGVVRN 240 (272)
T ss_dssp B------CCCTTTTHHHHHHHHHTGGGBBC
T ss_pred c------cccCcHHHHHHHHHHhCCCcccC
Confidence 2 24566777777766553334443
No 103
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.12 E-value=1.7e-10 Score=123.99 Aligned_cols=175 Identities=15% Similarity=0.094 Sum_probs=97.0
Q ss_pred cCCCCCCceEEEEecCCCCchhhhhhhhhHHHHhhHHHHHhhcCCCCCcceEEEeeeCCCCC-CCcccCccCccEEEEcC
Q 038751 684 EKKKNLIDLILIFNEREESDDEKASEEMNEEKEAKHEAVCEALRPPPDIKSLEIMVFKGRTP-SNWIGSLNKLKMLTLNS 762 (915)
Q Consensus 684 ~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-p~~~~~l~~L~~L~L~~ 762 (915)
.++++|+.|+++.|...... .......+..+++|+.|++++|..... |..++.+++|++|+|++
T Consensus 114 ~~~~~L~~L~Ls~n~i~~~~---------------~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 178 (310)
T 4glp_A 114 ATGLALSSLRLRNVSWATGR---------------SWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSD 178 (310)
T ss_dssp CCCBCCSSCEEESCCCSSTT---------------SSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCS
T ss_pred ccCCCCCEEEeecccccchh---------------hhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCC
Confidence 55667777777777533100 000011233567888888888877655 35677788888888888
Q ss_pred cCCCCC--C---CCCCCCCCcceeeccccccceEeCcc----ccCCcccccccccccCCCcc----cccC---cccceee
Q 038751 763 FVKCEI--M---PPLGKLPSLEILRIWHMRSVKRVGDE----FLGMEISDHIHIHGTSSSSS----VIAF---PKLQKLE 826 (915)
Q Consensus 763 ~~~~~~--l---~~l~~Lp~L~~L~L~~~~~l~~~~~~----~~~~~~l~~l~l~~~~~~~~----~~~f---~~L~~L~ 826 (915)
|..... + ..++.+|+|++|++++|. ++.++.. +.....++.|++++|.+... ...+ ++|+.|+
T Consensus 179 N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~ 257 (310)
T 4glp_A 179 NPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLN 257 (310)
T ss_dssp CTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEE
T ss_pred CCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEE
Confidence 753321 1 123678888888888775 4444332 12334555555555543221 2222 4666666
Q ss_pred ecCcccccccccCCCCcccCcccceeecccCccccCCCcCCCCCCCcCeEeEcCCc
Q 038751 827 LTGMDELEEWDFGNDDITIMPHIKSLYITYCEKLKSLPELLLRSTTLESLTIFGVP 882 (915)
Q Consensus 827 l~~~~~l~~~~~~~~~~~~lp~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~c~ 882 (915)
++++ .++.++. . .+++|+.|++++| ++..+|. +..+++|+.|++++++
T Consensus 258 Ls~N-~l~~lp~---~--~~~~L~~L~Ls~N-~l~~~~~-~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 258 LSFA-GLEQVPK---G--LPAKLRVLDLSSN-RLNRAPQ-PDELPEVDNLTLDGNP 305 (310)
T ss_dssp CCSS-CCCSCCS---C--CCSCCSCEECCSC-CCCSCCC-TTSCCCCSCEECSSTT
T ss_pred CCCC-CCCchhh---h--hcCCCCEEECCCC-cCCCCch-hhhCCCccEEECcCCC
Confidence 6554 2333321 1 2356666666655 4555554 4455666666666654
No 104
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.12 E-value=1.9e-10 Score=120.96 Aligned_cols=151 Identities=19% Similarity=0.226 Sum_probs=99.2
Q ss_pred cCCCCCcceEEEeeeCCCCCCCcccCccCccEEEEcCcCCCCCCCC-CCCCCCcceeeccccccceEeCcc-ccCCcccc
Q 038751 726 LRPPPDIKSLEIMVFKGRTPSNWIGSLNKLKMLTLNSFVKCEIMPP-LGKLPSLEILRIWHMRSVKRVGDE-FLGMEISD 803 (915)
Q Consensus 726 l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~Lp~L~~L~L~~~~~l~~~~~~-~~~~~~l~ 803 (915)
+..+++|+.|++++|....++ .+..+++|++|+|++|......+. ++.+++|++|++++|. +..++.. +.....++
T Consensus 59 l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~ 136 (272)
T 3rfs_A 59 IQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ-LQSLPDGVFDKLTNLT 136 (272)
T ss_dssp GGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCC
T ss_pred cccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCc-CCccCHHHhccCCCCC
Confidence 444666777777776655544 455677777777776643322222 5667777777777665 4444443 34456667
Q ss_pred cccccccCCCc----ccccCcccceeeecCcccccccccCCCCcccCcccceeecccCccccCCCc-CCCCCCCcCeEeE
Q 038751 804 HIHIHGTSSSS----SVIAFPKLQKLELTGMDELEEWDFGNDDITIMPHIKSLYITYCEKLKSLPE-LLLRSTTLESLTI 878 (915)
Q Consensus 804 ~l~l~~~~~~~----~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~lp~L~~L~l~~c~~L~~lp~-~l~~l~~L~~L~l 878 (915)
.|++++|.... .+..+++|+.|++.++ .+..+. +..+..+++|+.|++.+| .+..+|. .+..+++|+.|++
T Consensus 137 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~--~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l 212 (272)
T 3rfs_A 137 YLNLAHNQLQSLPKGVFDKLTNLTELDLSYN-QLQSLP--EGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWL 212 (272)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCC--TTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEEC
T ss_pred EEECCCCccCccCHHHhccCccCCEEECCCC-CcCccC--HHHhcCCccCCEEECCCC-cCCccCHHHHhCCcCCCEEEc
Confidence 77777664432 1357889999999987 354443 222457899999999998 5666664 4688999999999
Q ss_pred cCCc
Q 038751 879 FGVP 882 (915)
Q Consensus 879 ~~c~ 882 (915)
++||
T Consensus 213 ~~N~ 216 (272)
T 3rfs_A 213 HDNP 216 (272)
T ss_dssp CSSC
T ss_pred cCCC
Confidence 8864
No 105
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.10 E-value=7.6e-11 Score=125.32 Aligned_cols=147 Identities=16% Similarity=0.238 Sum_probs=109.3
Q ss_pred cCCCCCcceEEEeeeCCCCCCCcccCccCccEEEEcCcCCCCCCCCCCCCCCcceeeccccccceEeCccccCCcccccc
Q 038751 726 LRPPPDIKSLEIMVFKGRTPSNWIGSLNKLKMLTLNSFVKCEIMPPLGKLPSLEILRIWHMRSVKRVGDEFLGMEISDHI 805 (915)
Q Consensus 726 l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~Lp~L~~L~L~~~~~l~~~~~~~~~~~~l~~l 805 (915)
+..+++|+.|++++|....++. +..+++|++|++++|. ...++.++.+++|++|++++|. +..+ ..+.....++.|
T Consensus 64 ~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~L~~n~-i~~~-~~l~~l~~L~~L 139 (291)
T 1h6t_A 64 IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENK-VKDLSSLKDLKKLKSLSLEHNG-ISDI-NGLVHLPQLESL 139 (291)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCGGGGTTCTTCCEEECTTSC-CCCC-GGGGGCTTCCEE
T ss_pred HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCc-CCCChhhccCCCCCEEECCCCc-CCCC-hhhcCCCCCCEE
Confidence 4556788888888887777665 7778888888888774 4456667888888888888775 5555 345556677778
Q ss_pred cccccCCCc--ccccCcccceeeecCcccccccccCCCCcccCcccceeecccCccccCCCcCCCCCCCcCeEeEcCCcc
Q 038751 806 HIHGTSSSS--SVIAFPKLQKLELTGMDELEEWDFGNDDITIMPHIKSLYITYCEKLKSLPELLLRSTTLESLTIFGVPI 883 (915)
Q Consensus 806 ~l~~~~~~~--~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~lp~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~c~~ 883 (915)
++++|.... .+..+++|+.|+++++ .+..+.. +..+++|+.|++++| .+..+|. +..+++|+.|++++|+.
T Consensus 140 ~l~~n~l~~~~~l~~l~~L~~L~L~~N-~l~~~~~----l~~l~~L~~L~L~~N-~i~~l~~-l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 140 YLGNNKITDITVLSRLTKLDTLSLEDN-QISDIVP----LAGLTKLQNLYLSKN-HISDLRA-LAGLKNLDVLELFSQEC 212 (291)
T ss_dssp ECCSSCCCCCGGGGGCTTCSEEECCSS-CCCCCGG----GTTCTTCCEEECCSS-CCCBCGG-GTTCTTCSEEEEEEEEE
T ss_pred EccCCcCCcchhhccCCCCCEEEccCC-ccccchh----hcCCCccCEEECCCC-cCCCChh-hccCCCCCEEECcCCcc
Confidence 887775433 4567889999999887 3444432 558899999999988 6788875 78899999999998864
No 106
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.07 E-value=1.2e-12 Score=145.86 Aligned_cols=92 Identities=15% Similarity=0.079 Sum_probs=54.6
Q ss_pred hhccCCCCCCceEEEEecCCCCchhhhhhhhhHHHHhhHHHHHh-hcCCCCCcceEEEeeeCC-----CCCCCcccCccC
Q 038751 681 AHLEKKKNLIDLILIFNEREESDDEKASEEMNEEKEAKHEAVCE-ALRPPPDIKSLEIMVFKG-----RTPSNWIGSLNK 754 (915)
Q Consensus 681 ~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~-----~~~p~~~~~l~~ 754 (915)
..+..+++|+.|++++|.... . ....... .+..+++|+.|++++|.. ..+|.++..+++
T Consensus 181 ~~l~~~~~L~~L~L~~n~l~~----------~-----g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~ 245 (386)
T 2ca6_A 181 KTFQSHRLLHTVKMVQNGIRP----------E-----GIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPN 245 (386)
T ss_dssp HHHHHCTTCCEEECCSSCCCH----------H-----HHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTT
T ss_pred HHHHhCCCcCEEECcCCCCCH----------h-----HHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCC
Confidence 345566677777777764320 0 1112233 566677777777777765 334666667777
Q ss_pred ccEEEEcCcCCCCC----CC-CC--CCCCCcceeeccccc
Q 038751 755 LKMLTLNSFVKCEI----MP-PL--GKLPSLEILRIWHMR 787 (915)
Q Consensus 755 L~~L~L~~~~~~~~----l~-~l--~~Lp~L~~L~L~~~~ 787 (915)
|++|+|++|..... ++ .+ +.+++|++|+|++|.
T Consensus 246 L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~ 285 (386)
T 2ca6_A 246 LRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE 285 (386)
T ss_dssp CCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred cCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCc
Confidence 77777777753221 12 12 447777777777765
No 107
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.07 E-value=2.6e-13 Score=160.57 Aligned_cols=180 Identities=14% Similarity=0.122 Sum_probs=105.1
Q ss_pred hhccCCCCCCceEEEEecCCCCchhhhhhhhhHHHHhhHHHHHhhcCCCCCcceEEEeeeCCC-CCCCcccCccCccEEE
Q 038751 681 AHLEKKKNLIDLILIFNEREESDDEKASEEMNEEKEAKHEAVCEALRPPPDIKSLEIMVFKGR-TPSNWIGSLNKLKMLT 759 (915)
Q Consensus 681 ~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~p~~~~~l~~L~~L~ 759 (915)
..+..+++|+.|++++|.. ........+..+++|++|++.+|... .++.....+++|++|+
T Consensus 283 ~~~~~~~~L~~L~L~~~~l------------------~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~ 344 (594)
T 2p1m_B 283 AVYSVCSRLTTLNLSYATV------------------QSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELR 344 (594)
T ss_dssp GGHHHHTTCCEEECTTCCC------------------CHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEE
T ss_pred HHHHhhCCCCEEEccCCCC------------------CHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEE
Confidence 3344678899999987752 12223334567789999999987221 1222233588999999
Q ss_pred EcCcC-----CCCCCC-----CC-CCCCCcceeeccccccceEeCcc-cc-CCccccccccc--c----cCCCc------
Q 038751 760 LNSFV-----KCEIMP-----PL-GKLPSLEILRIWHMRSVKRVGDE-FL-GMEISDHIHIH--G----TSSSS------ 814 (915)
Q Consensus 760 L~~~~-----~~~~l~-----~l-~~Lp~L~~L~L~~~~~l~~~~~~-~~-~~~~l~~l~l~--~----~~~~~------ 814 (915)
|++|. ....+. .+ ..+|+|++|.+. |..+...+.. +. ....++.++++ + +..+.
T Consensus 345 L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~-~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~ 423 (594)
T 2p1m_B 345 VFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYF-CRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIG 423 (594)
T ss_dssp EECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEE-ESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHH
T ss_pred EecCcccccccCCCCCHHHHHHHHHhchhHHHHHHh-cCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhH
Confidence 96542 111111 11 247899999664 3334322111 11 24567777777 2 22220
Q ss_pred ---ccccCcccceeeecCcccccccccCCCCcc-cCcccceeecccCccccCCCcCC-CCCCCcCeEeEcCCcc
Q 038751 815 ---SVIAFPKLQKLELTGMDELEEWDFGNDDIT-IMPHIKSLYITYCEKLKSLPELL-LRSTTLESLTIFGVPI 883 (915)
Q Consensus 815 ---~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~-~lp~L~~L~l~~c~~L~~lp~~l-~~l~~L~~L~l~~c~~ 883 (915)
....+++|+.|++.+ ++....+. .+. .+++|+.|++.+|..-...+..+ ..+++|++|++++|+.
T Consensus 424 ~~~l~~~~~~L~~L~L~~--~l~~~~~~--~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~ 493 (594)
T 2p1m_B 424 FGAIVEHCKDLRRLSLSG--LLTDKVFE--YIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF 493 (594)
T ss_dssp HHHHHHHCTTCCEEECCS--SCCHHHHH--HHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC
T ss_pred HHHHHhhCCCccEEeecC--cccHHHHH--HHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC
Confidence 134578888888865 33322211 012 37899999999985322222222 4589999999999986
No 108
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.06 E-value=2e-10 Score=134.16 Aligned_cols=61 Identities=18% Similarity=0.215 Sum_probs=37.3
Q ss_pred hcCCCCCcceEEEeeeCCCCCCCcccCccCccEEEEcCcCCCCCCCCCCCCCCcceeeccccc
Q 038751 725 ALRPPPDIKSLEIMVFKGRTPSNWIGSLNKLKMLTLNSFVKCEIMPPLGKLPSLEILRIWHMR 787 (915)
Q Consensus 725 ~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~Lp~L~~L~L~~~~ 787 (915)
.+..+++|+.|++++|....++. +..+++|+.|+|++|. +..+|.++.|++|+.|+|++|+
T Consensus 148 ~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-i~~l~~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 148 VLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNH-ISDLRALAGLKNLDVLELFSQE 208 (605)
T ss_dssp GGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCBCGGGTTCTTCSEEECCSEE
T ss_pred hhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCC-CCCChHHccCCCCCEEEccCCc
Confidence 34455666666666666555544 5566677777776663 3345566666777777776654
No 109
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.06 E-value=2e-10 Score=121.99 Aligned_cols=61 Identities=18% Similarity=0.230 Sum_probs=45.6
Q ss_pred hcCCCCCcceEEEeeeCCCCCCCcccCccCccEEEEcCcCCCCCCCCCCCCCCcceeeccccc
Q 038751 725 ALRPPPDIKSLEIMVFKGRTPSNWIGSLNKLKMLTLNSFVKCEIMPPLGKLPSLEILRIWHMR 787 (915)
Q Consensus 725 ~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~Lp~L~~L~L~~~~ 787 (915)
.+..+++|+.|++++|....++. +..+++|+.|+|++| ....++.+..+++|+.|++++|+
T Consensus 151 ~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N-~i~~l~~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 151 VLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKN-HISDLRALAGLKNLDVLELFSQE 211 (291)
T ss_dssp GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCBCGGGTTCTTCSEEEEEEEE
T ss_pred hhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCC-cCCCChhhccCCCCCEEECcCCc
Confidence 34556777788887777766655 677888888888887 44456778888888888888775
No 110
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.04 E-value=5.9e-10 Score=117.15 Aligned_cols=172 Identities=17% Similarity=0.124 Sum_probs=129.7
Q ss_pred CCCCceEEEEecCCCCchhhhhhhhhHHHHhhHHHHHhhcCCCCCcceEEEeeeCCCCCCCc-ccCccCccEEEEcCcCC
Q 038751 687 KNLIDLILIFNEREESDDEKASEEMNEEKEAKHEAVCEALRPPPDIKSLEIMVFKGRTPSNW-IGSLNKLKMLTLNSFVK 765 (915)
Q Consensus 687 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~-~~~l~~L~~L~L~~~~~ 765 (915)
.+|+.|+++.|.... .....+..+++|+.|++++|....+|.. +..+++|++|+|++|..
T Consensus 37 ~~l~~L~l~~n~l~~-------------------~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l 97 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSS-------------------LPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKL 97 (270)
T ss_dssp TTCSEEECCSSCCSC-------------------CCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCC
T ss_pred CCCCEEECcCCCCCe-------------------eCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcC
Confidence 468889988775321 0123566789999999999988877654 46899999999998864
Q ss_pred CCCCC-CCCCCCCcceeeccccccceEeCcc-ccCCcccccccccccCCCc----ccccCcccceeeecCcccccccccC
Q 038751 766 CEIMP-PLGKLPSLEILRIWHMRSVKRVGDE-FLGMEISDHIHIHGTSSSS----SVIAFPKLQKLELTGMDELEEWDFG 839 (915)
Q Consensus 766 ~~~l~-~l~~Lp~L~~L~L~~~~~l~~~~~~-~~~~~~l~~l~l~~~~~~~----~~~~f~~L~~L~l~~~~~l~~~~~~ 839 (915)
....+ .++.+++|++|+++++. ++.++.. +.....++.|++++|.+.. .+..+++|+.|++.++ .+..+..
T Consensus 98 ~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~- 174 (270)
T 2o6q_A 98 QALPIGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNN-QLKRVPE- 174 (270)
T ss_dssp CCCCTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCT-
T ss_pred CcCCHhHcccccCCCEEECCCCc-cCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCC-cCcEeCh-
Confidence 43222 36889999999999887 6666544 4567889999999986543 2457899999999886 3444432
Q ss_pred CCCcccCcccceeecccCccccCCCcC-CCCCCCcCeEeEcCCc
Q 038751 840 NDDITIMPHIKSLYITYCEKLKSLPEL-LLRSTTLESLTIFGVP 882 (915)
Q Consensus 840 ~~~~~~lp~L~~L~l~~c~~L~~lp~~-l~~l~~L~~L~l~~c~ 882 (915)
..+..+++|+.|++++| .+..+|.. +..+++|+.|+++++|
T Consensus 175 -~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 175 -GAFDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp -TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred -hHhccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecCCC
Confidence 22557899999999998 67888864 7789999999999876
No 111
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.03 E-value=2.3e-10 Score=133.60 Aligned_cols=147 Identities=16% Similarity=0.224 Sum_probs=98.5
Q ss_pred cCCCCCcceEEEeeeCCCCCCCcccCccCccEEEEcCcCCCCCCCCCCCCCCcceeeccccccceEeCccccCCcccccc
Q 038751 726 LRPPPDIKSLEIMVFKGRTPSNWIGSLNKLKMLTLNSFVKCEIMPPLGKLPSLEILRIWHMRSVKRVGDEFLGMEISDHI 805 (915)
Q Consensus 726 l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~Lp~L~~L~L~~~~~l~~~~~~~~~~~~l~~l 805 (915)
+..+++|+.|++++|....+|. +..+++|+.|+|++|. +..+|.++.+++|++|+|++|. +..++ .+.....|+.|
T Consensus 61 l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L~~L 136 (605)
T 1m9s_A 61 IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENK-IKDLSSLKDLKKLKSLSLEHNG-ISDIN-GLVHLPQLESL 136 (605)
T ss_dssp GGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSC-CCCCTTSTTCTTCCEEECTTSC-CCCCG-GGGGCTTCSEE
T ss_pred HccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCC-CCCChhhccCCCCCEEEecCCC-CCCCc-cccCCCccCEE
Confidence 4456777777777776666654 6677777777777763 3456667777777777777765 44442 34555667777
Q ss_pred cccccCCCc--ccccCcccceeeecCcccccccccCCCCcccCcccceeecccCccccCCCcCCCCCCCcCeEeEcCCcc
Q 038751 806 HIHGTSSSS--SVIAFPKLQKLELTGMDELEEWDFGNDDITIMPHIKSLYITYCEKLKSLPELLLRSTTLESLTIFGVPI 883 (915)
Q Consensus 806 ~l~~~~~~~--~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~lp~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~c~~ 883 (915)
++++|.+.. .+..+++|+.|+|+++. +..+.. +..+++|+.|+|++| .+..+| .+..+++|+.|++++|+.
T Consensus 137 ~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~-l~~~~~----l~~l~~L~~L~Ls~N-~i~~l~-~l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 137 YLGNNKITDITVLSRLTKLDTLSLEDNQ-ISDIVP----LAGLTKLQNLYLSKN-HISDLR-ALAGLKNLDVLELFSQEC 209 (605)
T ss_dssp ECCSSCCCCCGGGGSCTTCSEEECCSSC-CCCCGG----GTTCTTCCEEECCSS-CCCBCG-GGTTCTTCSEEECCSEEE
T ss_pred ECCCCccCCchhhcccCCCCEEECcCCc-CCCchh----hccCCCCCEEECcCC-CCCCCh-HHccCCCCCEEEccCCcC
Confidence 777765432 35577888888888763 333321 457888888888887 567776 467788888888888754
No 112
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.99 E-value=2.2e-09 Score=116.11 Aligned_cols=267 Identities=16% Similarity=0.064 Sum_probs=143.8
Q ss_pred CccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 038751 171 SDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAII 250 (915)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 250 (915)
.+++|++..++.+...+..... .......+.|+|++|+|||++|+.+++. ... ..++++.+......+
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~-~~~~~~~vll~G~~GtGKT~la~~i~~~--~~~---~~~~~~~~~~~~~~~------ 79 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKA-RKEPLEHLLLFGPPGLGKTTLAHVIAHE--LGV---NLRVTSGPAIEKPGD------ 79 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHH-HCSCCCCCEEECCTTCCCHHHHHHHHHH--HTC---CEEEECTTTCCSHHH------
T ss_pred HHhhCHHHHHHHHHHHHHHHHc-cCCCCCcEEEECCCCCCHHHHHHHHHHH--hCC---CEEEEeccccCChHH------
Confidence 5699999999998888764321 1123456889999999999999999873 222 223444333222111
Q ss_pred HHhhCCCCCcccHHHHHHHHHHHhccCeEEEEEeCCCCCCccChhhhHHhhhcCC------------------CCceEEE
Q 038751 251 EGLEGSLPNLRELNSLLEYIHTSIKEKKFFLILDDVWPDDYSKWEPFHNCLMNGL------------------CGSRILV 312 (915)
Q Consensus 251 ~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~------------------~gs~iiv 312 (915)
+...+...+ .++.+|++||+........+.+...+.... .+.++|.
T Consensus 80 ---------------l~~~l~~~~-~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~ 143 (324)
T 1hqc_A 80 ---------------LAAILANSL-EEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIG 143 (324)
T ss_dssp ---------------HHHHHTTTC-CTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEE
T ss_pred ---------------HHHHHHHhc-cCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEE
Confidence 111111111 345688999996544334444554444321 2346666
Q ss_pred EcCchH-HHhhh-cC-cCeEeCCCCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCCCchHHHHHHhHhhcC--
Q 038751 313 TTRKET-VARMM-ES-TDVISIKELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKGLPLAAKTIGSLLRFK-- 387 (915)
Q Consensus 313 TtR~~~-v~~~~-~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~PLai~~~~~~l~~~-- 387 (915)
||.... +...+ .. ...+.+.+++.++...++...+........ .+....+++.++|.|..+..+...+...
T Consensus 144 ~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~----~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~ 219 (324)
T 1hqc_A 144 ATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRIT----EEAALEIGRRSRGTMRVAKRLFRRVRDFAQ 219 (324)
T ss_dssp EESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCC----HHHHHHHHHHSCSCHHHHHHHHHHHTTTST
T ss_pred eCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 666432 11111 11 358999999999999999887653322122 2446778888999998887665544211
Q ss_pred ------CCHHHHHHHHhhhccccccccccchHHHHHhhcCCChHhhhHHhHhc-cCCCC----------cccChHHHHH-
Q 038751 388 ------KTREEWHIILNSEMWQLEEFERGLLAPLLLSYNDLPSAIKRCFLYCA-VFPKD----------YNLDKDELVK- 449 (915)
Q Consensus 388 ------~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~~~s-~fp~~----------~~i~~~~Li~- 449 (915)
-+.+....+.... ...+..++...+..+..+. .|..+ ..+++..+.+
T Consensus 220 ~~~~~~i~~~~~~~~~~~~---------------~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~~ 284 (324)
T 1hqc_A 220 VAGEEVITRERALEALAAL---------------GLDELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEV 284 (324)
T ss_dssp TTSCSCCCHHHHHHHHHHH---------------TCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHHH
T ss_pred HhcCCCCCHHHHHHHHHHh---------------cccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHH
Confidence 1233333333221 1112233333333333222 11111 0123333222
Q ss_pred ---HHHHcCCcccC-CCccHHHHHHHHHH-HHHHcccccc
Q 038751 450 ---LWMAQGYIEQK-GNIEMEMTGEWYFD-FLATRSFFQE 484 (915)
Q Consensus 450 ---~W~aeg~i~~~-~~~~~e~~~~~~l~-~L~~~sll~~ 484 (915)
+-+..|++... .+....+.|..||+ ++.+|++||+
T Consensus 285 l~~~~i~~~li~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 324 (324)
T 1hqc_A 285 HEPYLIRQGLLKRTPRGRVPTELAYRHLGYPPPVGPLLEP 324 (324)
T ss_dssp THHHHHHTTSEEEETTEEEECHHHHHHTTCCCCC------
T ss_pred HhHHHHHhcchhcCCccceecHHHHHHHhcCCCCCCCCCC
Confidence 34567888644 34566788888887 8888888875
No 113
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.97 E-value=3.4e-09 Score=114.50 Aligned_cols=186 Identities=14% Similarity=0.119 Sum_probs=115.7
Q ss_pred CccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCC-eEEEEEeCCCCCHHHHHHHH
Q 038751 171 SDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFD-KRIWVCVSDPFDEFRIAKAI 249 (915)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i 249 (915)
.+++|++..++.+.+++... ..+.+.|+|++|+||||+|+.+++... ...+. ..++++.+...... ..+.+
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~~-~i~~~ 92 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDG------NMPHMIISGMPGIGKTTSVHCLAHELL-GRSYADGVLELNASDDRGID-VVRNQ 92 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSC------CCCCEEEECSTTSSHHHHHHHHHHHHH-GGGHHHHEEEECTTSCCSHH-HHHTH
T ss_pred HHHHCCHHHHHHHHHHHHcC------CCCeEEEECcCCCCHHHHHHHHHHHhc-CCcccCCEEEecCccccChH-HHHHH
Confidence 56999999999999998643 223389999999999999999987421 11111 23344333322221 12222
Q ss_pred HHHhhCCCCCcccHHHHHHHHHHHh-ccCeEEEEEeCCCCCCccChhhhHHhhhcCCCCceEEEEcCchH-HHh-hhcCc
Q 038751 250 IEGLEGSLPNLRELNSLLEYIHTSI-KEKKFFLILDDVWPDDYSKWEPFHNCLMNGLCGSRILVTTRKET-VAR-MMEST 326 (915)
Q Consensus 250 ~~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~-v~~-~~~~~ 326 (915)
+..+.... ..+ .+++.++|+||++.-....++.+...+.....++++|+||+... +.. .....
T Consensus 93 ~~~~~~~~--------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~ 158 (323)
T 1sxj_B 93 IKHFAQKK--------------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQC 158 (323)
T ss_dssp HHHHHHBC--------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTS
T ss_pred HHHHHhcc--------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhc
Confidence 22221000 011 34688999999976555556667777766667788888887642 111 12234
Q ss_pred CeEeCCCCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCCCchH-HHHHHh
Q 038751 327 DVISIKELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKGLPLA-AKTIGS 382 (915)
Q Consensus 327 ~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~PLa-i~~~~~ 382 (915)
..+++.+++.++..+++...+...+-... .+.+..|++.++|.|.. +..+..
T Consensus 159 ~~i~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~~l~~~~~G~~r~a~~~l~~ 211 (323)
T 1sxj_B 159 AILRYSKLSDEDVLKRLLQIIKLEDVKYT----NDGLEAIIFTAEGDMRQAINNLQS 211 (323)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHTCCBC----HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred eEEeecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 58999999999999999886532211111 24467788999999955 444433
No 114
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.94 E-value=5.5e-09 Score=108.33 Aligned_cols=150 Identities=20% Similarity=0.258 Sum_probs=117.4
Q ss_pred CCCcceEEEeeeCCCCC-CCcccCccCccEEEEcCcCCCCCCCC-CCCCCCcceeeccccccceEeCcc-ccCCcccccc
Q 038751 729 PPDIKSLEIMVFKGRTP-SNWIGSLNKLKMLTLNSFVKCEIMPP-LGKLPSLEILRIWHMRSVKRVGDE-FLGMEISDHI 805 (915)
Q Consensus 729 ~~~L~~L~l~~~~~~~~-p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~Lp~L~~L~L~~~~~l~~~~~~-~~~~~~l~~l 805 (915)
+++|+.|++.++....+ |..+..+++|++|+|++|......+. ++.+++|++|+|+++. ++.++.. +.....++.|
T Consensus 34 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L 112 (251)
T 3m19_A 34 PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ-LASLPLGVFDHLTQLDKL 112 (251)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEE
T ss_pred CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCc-ccccChhHhcccCCCCEE
Confidence 36899999999988776 44678899999999999865443333 7889999999999987 6666544 4567889999
Q ss_pred cccccCCCc----ccccCcccceeeecCcccccccccCCCCcccCcccceeecccCccccCCCc-CCCCCCCcCeEeEcC
Q 038751 806 HIHGTSSSS----SVIAFPKLQKLELTGMDELEEWDFGNDDITIMPHIKSLYITYCEKLKSLPE-LLLRSTTLESLTIFG 880 (915)
Q Consensus 806 ~l~~~~~~~----~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~lp~L~~L~l~~c~~L~~lp~-~l~~l~~L~~L~l~~ 880 (915)
++++|.+.. .+..+++|+.|++.++ .+..+.. ..+..+++|+.|++++| .+..+|. .+..+++|+.|++++
T Consensus 113 ~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~--~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~ 188 (251)
T 3m19_A 113 YLGGNQLKSLPSGVFDRLTKLKELRLNTN-QLQSIPA--GAFDKLTNLQTLSLSTN-QLQSVPHGAFDRLGKLQTITLFG 188 (251)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT--TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCS
T ss_pred EcCCCcCCCcChhHhccCCcccEEECcCC-cCCccCH--HHcCcCcCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeC
Confidence 999986543 2356899999999987 4555542 23568999999999998 6777775 678899999999999
Q ss_pred Ccc
Q 038751 881 VPI 883 (915)
Q Consensus 881 c~~ 883 (915)
|+-
T Consensus 189 N~~ 191 (251)
T 3m19_A 189 NQF 191 (251)
T ss_dssp CCB
T ss_pred Cce
Confidence 864
No 115
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.94 E-value=2.1e-09 Score=112.21 Aligned_cols=144 Identities=15% Similarity=0.140 Sum_probs=115.9
Q ss_pred CCCCcceEEEeeeCCCCCCCcccCccCccEEEEcCcCCCCCCCCCCCCCCcceeeccccccceEeCccccCCcccccccc
Q 038751 728 PPPDIKSLEIMVFKGRTPSNWIGSLNKLKMLTLNSFVKCEIMPPLGKLPSLEILRIWHMRSVKRVGDEFLGMEISDHIHI 807 (915)
Q Consensus 728 ~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~Lp~L~~L~L~~~~~l~~~~~~~~~~~~l~~l~l 807 (915)
.+++|+.|++.+|....+| .+..+++|++|+|++|. +..+++++.+++|++|++++|. ++.++.... ..++.|++
T Consensus 39 ~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~-i~~~~~l~~l~~L~~L~L~~N~-l~~l~~~~~--~~L~~L~L 113 (263)
T 1xeu_A 39 ELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQ-ISDLSPLKDLTKLEELSVNRNR-LKNLNGIPS--ACLSRLFL 113 (263)
T ss_dssp HHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGGGTTCSSCCEEECCSSC-CSCCTTCCC--SSCCEEEC
T ss_pred hcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCc-cCCChhhccCCCCCEEECCCCc-cCCcCcccc--CcccEEEc
Confidence 3578999999999888888 57889999999999884 4455569999999999999986 666664333 78899999
Q ss_pred cccCCCc--ccccCcccceeeecCcccccccccCCCCcccCcccceeecccCccccCCCcCCCCCCCcCeEeEcCCcc
Q 038751 808 HGTSSSS--SVIAFPKLQKLELTGMDELEEWDFGNDDITIMPHIKSLYITYCEKLKSLPELLLRSTTLESLTIFGVPI 883 (915)
Q Consensus 808 ~~~~~~~--~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~lp~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~c~~ 883 (915)
++|.+.. .+..+++|+.|+++++. +..++ .+..+++|+.|++++| .+..+ ..+..+++|+.|++++|+.
T Consensus 114 ~~N~l~~~~~l~~l~~L~~L~Ls~N~-i~~~~----~l~~l~~L~~L~L~~N-~i~~~-~~l~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 114 DNNELRDTDSLIHLKNLEILSIRNNK-LKSIV----MLGFLSKLEVLDLHGN-EITNT-GGLTRLKKVNWIDLTGQKC 184 (263)
T ss_dssp CSSCCSBSGGGTTCTTCCEEECTTSC-CCBCG----GGGGCTTCCEEECTTS-CCCBC-TTSTTCCCCCEEEEEEEEE
T ss_pred cCCccCCChhhcCcccccEEECCCCc-CCCCh----HHccCCCCCEEECCCC-cCcch-HHhccCCCCCEEeCCCCcc
Confidence 9986543 46688999999999863 55543 2568999999999998 56777 5688899999999999864
No 116
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.93 E-value=1.2e-09 Score=105.56 Aligned_cols=132 Identities=20% Similarity=0.273 Sum_probs=105.2
Q ss_pred CCCCCcceEEEeeeCCC--CCCCcccCccCccEEEEcCcCCCCCCCCCCCCCCcceeeccccccceE-eCccccCCcccc
Q 038751 727 RPPPDIKSLEIMVFKGR--TPSNWIGSLNKLKMLTLNSFVKCEIMPPLGKLPSLEILRIWHMRSVKR-VGDEFLGMEISD 803 (915)
Q Consensus 727 ~~~~~L~~L~l~~~~~~--~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~Lp~L~~L~L~~~~~l~~-~~~~~~~~~~l~ 803 (915)
..+++|+.|++.+|... .+|..+..+++|++|++++|. +..++.++.+++|++|++++|. +.. ++..
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~-------- 90 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISVSNLPKLPKLKKLELSENR-IFGGLDML-------- 90 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCCSSCCCCSSCCEEEEESCC-CCSCCCHH--------
T ss_pred CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCChhhhccCCCCCEEECcCCc-CchHHHHH--------
Confidence 45689999999999887 789888999999999999996 4444888999999999999987 433 2221
Q ss_pred cccccccCCCcccccCcccceeeecCcccccccccCCCCcccCcccceeecccCccccCCCc----CCCCCCCcCeEeEc
Q 038751 804 HIHIHGTSSSSSVIAFPKLQKLELTGMDELEEWDFGNDDITIMPHIKSLYITYCEKLKSLPE----LLLRSTTLESLTIF 879 (915)
Q Consensus 804 ~l~l~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~lp~L~~L~l~~c~~L~~lp~----~l~~l~~L~~L~l~ 879 (915)
...+++|+.|++.++ .+..++.. ..+..+++|+.|++++| .+..+|. .+..+++|++|+++
T Consensus 91 ------------~~~l~~L~~L~Ls~N-~l~~~~~~-~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~ 155 (168)
T 2ell_A 91 ------------AEKLPNLTHLNLSGN-KLKDISTL-EPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGY 155 (168)
T ss_dssp ------------HHHCTTCCEEECBSS-SCCSSGGG-GGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTE
T ss_pred ------------HhhCCCCCEEeccCC-ccCcchhH-HHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCC
Confidence 235889999999987 45554321 22568999999999999 5777876 68889999999999
Q ss_pred CCcc
Q 038751 880 GVPI 883 (915)
Q Consensus 880 ~c~~ 883 (915)
+|+.
T Consensus 156 ~n~~ 159 (168)
T 2ell_A 156 DRED 159 (168)
T ss_dssp ETTS
T ss_pred CCCh
Confidence 9965
No 117
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.92 E-value=3.5e-11 Score=132.47 Aligned_cols=243 Identities=12% Similarity=0.030 Sum_probs=120.5
Q ss_pred cchhccccCCcceeeecCCCCCccccc----cccCCCc-CCCcccCcccC------CcCCCC-----CCCCccCceeecc
Q 038751 576 VLQGLFDQLTCLRALKIEDLPPTIKIP----KGLENLI-HLRYLKLSMVP------NGIERL-----TSLRTLSEFAVAR 639 (915)
Q Consensus 576 ~lp~~i~~L~~Lr~L~l~~~~~~~~lP----~~i~~L~-~Lr~L~l~~lP------~~i~~L-----~~L~~L~~~~~~~ 639 (915)
.+|..+....+|++|++++|.....-+ ..+.++. +|++|+++... ..+..+ ++|++|++..+..
T Consensus 13 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l 92 (362)
T 3goz_A 13 PVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFL 92 (362)
T ss_dssp HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCG
T ss_pred HHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcC
Confidence 456666677779999999988663222 4566676 77777765432 111111 4444444332211
Q ss_pred cCCccCCCCcCCCCCcCccccccceeEcCccCCCChhhHhHhhccCC-CCCCceEEEEecCCCCchhhhhhhhhHHHHhh
Q 038751 640 VGGKYSSKSCNLEGLRPLNHLRGFLQISGLGNVTDADEAKNAHLEKK-KNLIDLILIFNEREESDDEKASEEMNEEKEAK 718 (915)
Q Consensus 640 ~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~l-~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~ 718 (915)
.. .........+..+ ++|+.|++++|..... .
T Consensus 93 ~~--------------------------------~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~---------------~ 125 (362)
T 3goz_A 93 SY--------------------------------KSSDELVKTLAAIPFTITVLDLGWNDFSSK---------------S 125 (362)
T ss_dssp GG--------------------------------SCHHHHHHHHHTSCTTCCEEECCSSCGGGS---------------C
T ss_pred Ch--------------------------------HHHHHHHHHHHhCCCCccEEECcCCcCCcH---------------H
Confidence 10 0111122233444 5677777776642210 1
Q ss_pred HHHHHhhcCC-CCCcceEEEeeeCCCC-----CCCcccCcc-CccEEEEcCcCCCCCCC-----CCCCC-CCcceeeccc
Q 038751 719 HEAVCEALRP-PPDIKSLEIMVFKGRT-----PSNWIGSLN-KLKMLTLNSFVKCEIMP-----PLGKL-PSLEILRIWH 785 (915)
Q Consensus 719 ~~~~~~~l~~-~~~L~~L~l~~~~~~~-----~p~~~~~l~-~L~~L~L~~~~~~~~l~-----~l~~L-p~L~~L~L~~ 785 (915)
...+...+.. +++|+.|++++|.... ++.++..++ +|++|+|++|......+ .+..+ ++|++|+|++
T Consensus 126 ~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~ 205 (362)
T 3goz_A 126 SSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSA 205 (362)
T ss_dssp HHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTT
T ss_pred HHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCC
Confidence 2223334444 3577777777765442 233333444 77777777764322221 12344 3777777777
Q ss_pred cccceEeCccccCCcccccccccccCCCccccc-CcccceeeecCcccccccccC--CCCcccCcccceeecccCc----
Q 038751 786 MRSVKRVGDEFLGMEISDHIHIHGTSSSSSVIA-FPKLQKLELTGMDELEEWDFG--NDDITIMPHIKSLYITYCE---- 858 (915)
Q Consensus 786 ~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~-f~~L~~L~l~~~~~l~~~~~~--~~~~~~lp~L~~L~l~~c~---- 858 (915)
|. ++..+..... ..+.. .++|+.|+++++. +...... ...+..+++|+.|++++|.
T Consensus 206 N~-i~~~~~~~l~---------------~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i 268 (362)
T 3goz_A 206 NL-LGLKSYAELA---------------YIFSSIPNHVVSLNLCLNC-LHGPSLENLKLLKDSLKHLQTVYLDYDIVKNM 268 (362)
T ss_dssp SC-GGGSCHHHHH---------------HHHHHSCTTCCEEECCSSC-CCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTC
T ss_pred CC-CChhHHHHHH---------------HHHhcCCCCceEEECcCCC-CCcHHHHHHHHHHhcCCCccEEEeccCCcccc
Confidence 65 3321110000 00112 2467777776652 3322110 0012356677777777764
Q ss_pred ---cccCCCcCCCCCCCcCeEeEcCCc
Q 038751 859 ---KLKSLPELLLRSTTLESLTIFGVP 882 (915)
Q Consensus 859 ---~L~~lp~~l~~l~~L~~L~l~~c~ 882 (915)
.+..++..+.++++|++|++++++
T Consensus 269 ~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 269 SKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp CHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred CHHHHHHHHHHhccCCceEEEecCCCc
Confidence 123344455666777777777764
No 118
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.91 E-value=5.8e-09 Score=106.41 Aligned_cols=129 Identities=22% Similarity=0.263 Sum_probs=101.2
Q ss_pred CCCcceEEEeeeCCCCC-CCcccCccCccEEEEcCcCCCCCCCC--CCCCCCcceeeccccccceEeCccccCCcccccc
Q 038751 729 PPDIKSLEIMVFKGRTP-SNWIGSLNKLKMLTLNSFVKCEIMPP--LGKLPSLEILRIWHMRSVKRVGDEFLGMEISDHI 805 (915)
Q Consensus 729 ~~~L~~L~l~~~~~~~~-p~~~~~l~~L~~L~L~~~~~~~~l~~--l~~Lp~L~~L~L~~~~~l~~~~~~~~~~~~l~~l 805 (915)
+++|+.|++++|....+ |..+..+++|++|+|++|.. ..+|. ++.+++|++|+|++|. ++.++...
T Consensus 39 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l-~~i~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~--------- 107 (229)
T 3e6j_A 39 PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQ-LTVLPSAV--------- 107 (229)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSC-CCCCCTTT---------
T ss_pred CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCC-CCcChhhcccCCCcCEEECCCCc-CCccChhH---------
Confidence 47899999999988776 67788899999999998854 44443 6889999999998875 65555432
Q ss_pred cccccCCCcccccCcccceeeecCcccccccccCCCCcccCcccceeecccCccccCCCc-CCCCCCCcCeEeEcCCcc
Q 038751 806 HIHGTSSSSSVIAFPKLQKLELTGMDELEEWDFGNDDITIMPHIKSLYITYCEKLKSLPE-LLLRSTTLESLTIFGVPI 883 (915)
Q Consensus 806 ~l~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~lp~L~~L~l~~c~~L~~lp~-~l~~l~~L~~L~l~~c~~ 883 (915)
+..+++|+.|++.++ .+..++ ..+..+++|+.|++++| ++..+|. .+..+++|+.|++.++|-
T Consensus 108 ----------~~~l~~L~~L~Ls~N-~l~~lp---~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 108 ----------FDRLVHLKELFMCCN-KLTELP---RGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp ----------TTTCTTCCEEECCSS-CCCSCC---TTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred ----------hCcchhhCeEeccCC-cccccC---cccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCCc
Confidence 247889999999886 355543 33568999999999998 6788884 578899999999998763
No 119
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.89 E-value=3.4e-11 Score=139.88 Aligned_cols=121 Identities=19% Similarity=0.197 Sum_probs=84.8
Q ss_pred CCcceEEEeeeCCCCCCCcccCccCccEEEEcCcCCCCCCC-CCCCCCCcceeeccccccceEeCccccCCccccccccc
Q 038751 730 PDIKSLEIMVFKGRTPSNWIGSLNKLKMLTLNSFVKCEIMP-PLGKLPSLEILRIWHMRSVKRVGDEFLGMEISDHIHIH 808 (915)
Q Consensus 730 ~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~-~l~~Lp~L~~L~L~~~~~l~~~~~~~~~~~~l~~l~l~ 808 (915)
..|+.|++++|....+|. ++.+++|+.|+|++|... .+| .++.|++|++|+|++|. ++.+| .
T Consensus 441 ~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~-l~~lp-~------------- 503 (567)
T 1dce_A 441 ADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNA-LENVD-G------------- 503 (567)
T ss_dssp TTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSC-CCCCG-G-------------
T ss_pred cCceEEEecCCCCCCCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCC-CCCCc-c-------------
Confidence 358889999888888887 888899999999888544 554 47888889999888875 44444 1
Q ss_pred ccCCCcccccCcccceeeecCcccccccccCCCCcccCcccceeecccCccccCCCcCCC----CCCCcCeEe
Q 038751 809 GTSSSSSVIAFPKLQKLELTGMDELEEWDFGNDDITIMPHIKSLYITYCEKLKSLPELLL----RSTTLESLT 877 (915)
Q Consensus 809 ~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~lp~L~~L~l~~c~~L~~lp~~l~----~l~~L~~L~ 877 (915)
++.+++|+.|+++++ .+..+.. +..++.+++|+.|++++| .+..+|..+. .+++|+.|+
T Consensus 504 -------l~~l~~L~~L~Ls~N-~l~~~~~-p~~l~~l~~L~~L~L~~N-~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 504 -------VANLPRLQELLLCNN-RLQQSAA-IQPLVSCPRLVLLNLQGN-SLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp -------GTTCSSCCEEECCSS-CCCSSST-TGGGGGCTTCCEEECTTS-GGGGSSSCTTHHHHHCTTCSEEE
T ss_pred -------cCCCCCCcEEECCCC-CCCCCCC-cHHHhcCCCCCEEEecCC-cCCCCccHHHHHHHHCcccCccC
Confidence 346778888888775 3444320 223567888888888887 4666665443 267777775
No 120
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.88 E-value=8.2e-10 Score=109.92 Aligned_cols=149 Identities=18% Similarity=0.246 Sum_probs=98.1
Q ss_pred ccccCCcceeeecCCCCCccccccccCCCcCCCcccCccc----CCcCCCCCCCCccCceeecccCCccCCCCcCCCCCc
Q 038751 580 LFDQLTCLRALKIEDLPPTIKIPKGLENLIHLRYLKLSMV----PNGIERLTSLRTLSEFAVARVGGKYSSKSCNLEGLR 655 (915)
Q Consensus 580 ~i~~L~~Lr~L~l~~~~~~~~lP~~i~~L~~Lr~L~l~~l----P~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~L~ 655 (915)
..+.+.+|++|+++++... .+| .+..+++|++|+++.. ++.+..+++|++|
T Consensus 39 ~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L----------------------- 93 (197)
T 4ezg_A 39 TEAQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATNYNPISGLSNLERL----------------------- 93 (197)
T ss_dssp BHHHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEE-----------------------
T ss_pred ChhhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEE-----------------------
Confidence 3467788888888887766 666 5777777777775432 1123333333333
Q ss_pred CccccccceeEcCccCCCChhhHhHhhccCCCCCCceEEEEecCCCCchhhhhhhhhHHHHhhHHHHHhhcCCCCCcceE
Q 038751 656 PLNHLRGFLQISGLGNVTDADEAKNAHLEKKKNLIDLILIFNEREESDDEKASEEMNEEKEAKHEAVCEALRPPPDIKSL 735 (915)
Q Consensus 656 ~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L 735 (915)
.+.+ +......+..+.++++|+.|+++.|... ...+..+..+++|+.|
T Consensus 94 ---------~l~~----n~l~~~~~~~l~~l~~L~~L~Ls~n~i~-------------------~~~~~~l~~l~~L~~L 141 (197)
T 4ezg_A 94 ---------RIMG----KDVTSDKIPNLSGLTSLTLLDISHSAHD-------------------DSILTKINTLPKVNSI 141 (197)
T ss_dssp ---------EEEC----TTCBGGGSCCCTTCTTCCEEECCSSBCB-------------------GGGHHHHTTCSSCCEE
T ss_pred ---------EeEC----CccCcccChhhcCCCCCCEEEecCCccC-------------------cHhHHHHhhCCCCCEE
Confidence 3333 1111222334666778888888877532 1123455677889999
Q ss_pred EEeeeC-CCCCCCcccCccCccEEEEcCcCCCCCCCCCCCCCCcceeeccccc
Q 038751 736 EIMVFK-GRTPSNWIGSLNKLKMLTLNSFVKCEIMPPLGKLPSLEILRIWHMR 787 (915)
Q Consensus 736 ~l~~~~-~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~Lp~L~~L~L~~~~ 787 (915)
++++|. ...+| .+..+++|++|++++|. ...++.+..+|+|++|+++++.
T Consensus 142 ~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~-i~~~~~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 142 DLSYNGAITDIM-PLKTLPELKSLNIQFDG-VHDYRGIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp ECCSCTBCCCCG-GGGGCSSCCEEECTTBC-CCCCTTGGGCSSCCEEEECBC-
T ss_pred EccCCCCccccH-hhcCCCCCCEEECCCCC-CcChHHhccCCCCCEEEeeCcc
Confidence 999887 66666 57789999999999885 4456688889999999998865
No 121
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.87 E-value=1.8e-08 Score=104.48 Aligned_cols=172 Identities=15% Similarity=0.164 Sum_probs=129.0
Q ss_pred CCcceEEEeeeCCCCCCCcccCccCccEEEEcCcCCCCCCC-CCCCCCCcceeeccccccceEeCcc-ccCCcccccccc
Q 038751 730 PDIKSLEIMVFKGRTPSNWIGSLNKLKMLTLNSFVKCEIMP-PLGKLPSLEILRIWHMRSVKRVGDE-FLGMEISDHIHI 807 (915)
Q Consensus 730 ~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~-~l~~Lp~L~~L~L~~~~~l~~~~~~-~~~~~~l~~l~l 807 (915)
.+.+.+++.++....+|..+. ++|+.|+|++|......+ .++.+++|++|+|+++. ++.++.. +.....++.|++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQ-LQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCc-CCccCHhHhccCCcCCEEEC
Confidence 356788888888888887654 799999999986554433 48899999999999986 6555544 567789999999
Q ss_pred cccCCCc----ccccCcccceeeecCcccccccccCCCCcccCcccceeecccCccccCCCc-CCCCCCCcCeEeEcCCc
Q 038751 808 HGTSSSS----SVIAFPKLQKLELTGMDELEEWDFGNDDITIMPHIKSLYITYCEKLKSLPE-LLLRSTTLESLTIFGVP 882 (915)
Q Consensus 808 ~~~~~~~----~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~lp~L~~L~l~~c~~L~~lp~-~l~~l~~L~~L~l~~c~ 882 (915)
++|.+.. .+..+++|+.|++.++ .+..+.. ..+..+++|+.|++++| .+..+|. .+..+++|++|++++|.
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~--~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 166 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGN-QLKSLPS--GVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTNQ 166 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT--TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCcccccChhHhcccCCCCEEEcCCC-cCCCcCh--hHhccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCCc
Confidence 9987643 3457899999999986 4554432 22457999999999998 7888886 58889999999999985
Q ss_pred chhHhhccCCCCCcccccCCCcceecccccc
Q 038751 883 IVQESFKRRTEKDWSKISHIPNIKIQNIVFR 913 (915)
Q Consensus 883 ~l~~~~~~~~~~~~~~i~~ip~v~~~~~~~~ 913 (915)
.- ......+.....+..+.+.+|.+.
T Consensus 167 l~-----~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 167 LQ-----SVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp CS-----CCCTTTTTTCTTCCEEECCSCCBC
T ss_pred CC-----ccCHHHHhCCCCCCEEEeeCCcee
Confidence 42 112224555667777777777653
No 122
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.87 E-value=3.8e-08 Score=103.78 Aligned_cols=208 Identities=9% Similarity=-0.027 Sum_probs=130.6
Q ss_pred ccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhccccccc---CCC--eEEEEEeCCCCCHHHHH
Q 038751 172 DVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIE---NFD--KRIWVCVSDPFDEFRIA 246 (915)
Q Consensus 172 ~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~F~--~~~wv~vs~~~~~~~~~ 246 (915)
.+.||++|.++|...|...-. .+..+.+.|+|++|+|||++|+.|++...... ... ..+.|+.....+...++
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~--~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~ 98 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLM--SSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALY 98 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--TTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhc--CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHH
Confidence 488999999999998876432 34567889999999999999999998532111 111 35677777778889999
Q ss_pred HHHHHHhhCCCCC-cccHHHHHHHHHHH--hccCeEEEEEeCCCCCCccChhhhHHhhhcC-CCCc--eEEEEcCchH--
Q 038751 247 KAIIEGLEGSLPN-LRELNSLLEYIHTS--IKEKKFFLILDDVWPDDYSKWEPFHNCLMNG-LCGS--RILVTTRKET-- 318 (915)
Q Consensus 247 ~~i~~~l~~~~~~-~~~~~~~~~~l~~~--l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~-~~gs--~iivTtR~~~-- 318 (915)
..|++++.+.... ....+.+...+... -.+++++++||++..-. .-+.+...+... ...+ .||.++...+
T Consensus 99 ~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~ 176 (318)
T 3te6_A 99 EKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--SEKILQYFEKWISSKNSKLSIICVGGHNVTI 176 (318)
T ss_dssp HHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHHCSSCCEEEEEECCSSCCC
T ss_pred HHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--cchHHHHHHhcccccCCcEEEEEEecCcccc
Confidence 9999999764221 22233333333332 24678999999995432 334444444311 1223 3333443321
Q ss_pred ---HH----hhhcCcCeEeCCCCCHHHHHHHHHHhHcCCCC-----------------------------------CCch
Q 038751 319 ---VA----RMMESTDVISIKELSEQECWSLFKRFAFSGRS-----------------------------------PTEC 356 (915)
Q Consensus 319 ---v~----~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~-----------------------------------~~~~ 356 (915)
+. +.+. ...+.+.|++.+|..+++.+++..... .-.+
T Consensus 177 ~~~L~~~v~SR~~-~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 255 (318)
T 3te6_A 177 REQINIMPSLKAH-FTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQNQKIPDNVIVINHKINN 255 (318)
T ss_dssp HHHHHTCHHHHTT-EEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC--------CTTEEEECEECCH
T ss_pred hhhcchhhhccCC-ceEEEeCCCCHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccccccccccccCH
Confidence 11 1111 247999999999999999887533111 0134
Q ss_pred hHHHHHHHHHHHhcCCCchHHHHHHhHh
Q 038751 357 EQLEEIGRKIVGKCKGLPLAAKTIGSLL 384 (915)
Q Consensus 357 ~~l~~~~~~i~~~c~G~PLai~~~~~~l 384 (915)
..++-+|++++...|-.-.|+..+-.+.
T Consensus 256 ~ai~~~A~~vA~~~GD~R~Al~ilr~A~ 283 (318)
T 3te6_A 256 KITQLIAKNVANVSGSTEKAFKICEAAV 283 (318)
T ss_dssp HHHHHHHHHHHHHHCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCChHHHHHHHHHHHH
Confidence 5677777777778888888887765444
No 123
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.86 E-value=7.8e-09 Score=104.69 Aligned_cols=130 Identities=14% Similarity=0.176 Sum_probs=96.8
Q ss_pred CCcceEEEeeeCCCCCCC-cccCccCccEEEEcCcCCCCCC-CCCCCCCCcceeeccccccceEeCccccCCcccccccc
Q 038751 730 PDIKSLEIMVFKGRTPSN-WIGSLNKLKMLTLNSFVKCEIM-PPLGKLPSLEILRIWHMRSVKRVGDEFLGMEISDHIHI 807 (915)
Q Consensus 730 ~~L~~L~l~~~~~~~~p~-~~~~l~~L~~L~L~~~~~~~~l-~~l~~Lp~L~~L~L~~~~~l~~~~~~~~~~~~l~~l~l 807 (915)
++|+.|++.+|....+|. .+..+++|++|+|++|...... ..++.+++|++|+|+++. ++.++...
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~----------- 99 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK-ITELPKSL----------- 99 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC-CCCCCTTT-----------
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc-CCccCHhH-----------
Confidence 678888888887776643 6777888888888888544432 347788888888888876 55555432
Q ss_pred cccCCCcccccCcccceeeecCcccccccccCCCCcccCcccceeecccCccccCCCc-CCCCCCCcCeEeEcCCcc
Q 038751 808 HGTSSSSSVIAFPKLQKLELTGMDELEEWDFGNDDITIMPHIKSLYITYCEKLKSLPE-LLLRSTTLESLTIFGVPI 883 (915)
Q Consensus 808 ~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~lp~L~~L~l~~c~~L~~lp~-~l~~l~~L~~L~l~~c~~ 883 (915)
+..+++|+.|++.++. +..+. +..+..+++|+.|++++| .+..+|. .+..+++|+.|+++++|-
T Consensus 100 --------f~~l~~L~~L~L~~N~-l~~~~--~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 100 --------FEGLFSLQLLLLNANK-INCLR--VDAFQDLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp --------TTTCTTCCEEECCSSC-CCCCC--TTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred --------ccCCCCCCEEECCCCC-CCEeC--HHHcCCCCCCCEEECCCC-cCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 2378899999998863 44443 233668999999999998 6777775 478899999999998763
No 124
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.86 E-value=2.1e-11 Score=141.55 Aligned_cols=99 Identities=15% Similarity=0.173 Sum_probs=56.5
Q ss_pred cCCCCCcceEEEeeeCCCCCCCcccCccCccEEEEcCcCCCCCCCCCCCCCCcceeeccccccceEe--CccccCCcccc
Q 038751 726 LRPPPDIKSLEIMVFKGRTPSNWIGSLNKLKMLTLNSFVKCEIMPPLGKLPSLEILRIWHMRSVKRV--GDEFLGMEISD 803 (915)
Q Consensus 726 l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~Lp~L~~L~L~~~~~l~~~--~~~~~~~~~l~ 803 (915)
+..+++|+.|++++|....+|..++.+++|+.|+|++|.. ..+|.++.|++|++|+|++|. ++.+ |..+.....|+
T Consensus 459 ~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l-~~lp~l~~l~~L~~L~Ls~N~-l~~~~~p~~l~~l~~L~ 536 (567)
T 1dce_A 459 LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNAL-ENVDGVANLPRLQELLLCNNR-LQQSAAIQPLVSCPRLV 536 (567)
T ss_dssp GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCC-CCCGGGTTCSSCCEEECCSSC-CCSSSTTGGGGGCTTCC
T ss_pred ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCC-CCCcccCCCCCCcEEECCCCC-CCCCCCcHHHhcCCCCC
Confidence 3445566666666666666666666666666666666532 235556666666666666654 4444 45555555666
Q ss_pred cccccccCCCccc-------ccCcccceee
Q 038751 804 HIHIHGTSSSSSV-------IAFPKLQKLE 826 (915)
Q Consensus 804 ~l~l~~~~~~~~~-------~~f~~L~~L~ 826 (915)
.|++++|.+.... ..+|+|+.|+
T Consensus 537 ~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 537 LLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp EEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred EEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 6666665443211 2366777664
No 125
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.82 E-value=3.1e-09 Score=103.54 Aligned_cols=136 Identities=17% Similarity=0.190 Sum_probs=106.4
Q ss_pred cCCCCCcceEEEeeeCCCCCCCcccCccCccEEEEcCcCCCCCCCCCCCCCCcceeeccccccceEeCccccCCcccccc
Q 038751 726 LRPPPDIKSLEIMVFKGRTPSNWIGSLNKLKMLTLNSFVKCEIMPPLGKLPSLEILRIWHMRSVKRVGDEFLGMEISDHI 805 (915)
Q Consensus 726 l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~Lp~L~~L~L~~~~~l~~~~~~~~~~~~l~~l 805 (915)
...+++|+.|++.+|....+|......++|+.|++++|.. ..++.++.+++|++|++++|. +..++..++
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l-~~~~~l~~l~~L~~L~Ls~N~-l~~~~~~~~-------- 84 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEI-RKLDGFPLLRRLKTLLVNNNR-ICRIGEGLD-------- 84 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCC-CEECCCCCCSSCCEEECCSSC-CCEECSCHH--------
T ss_pred cCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCC-CcccccccCCCCCEEECCCCc-ccccCcchh--------
Confidence 4567899999999999888876444455999999999854 345889999999999999986 666664332
Q ss_pred cccccCCCcccccCcccceeeecCcccccccccCCCCcccCcccceeecccCccccCCCcC----CCCCCCcCeEeEcCC
Q 038751 806 HIHGTSSSSSVIAFPKLQKLELTGMDELEEWDFGNDDITIMPHIKSLYITYCEKLKSLPEL----LLRSTTLESLTIFGV 881 (915)
Q Consensus 806 ~l~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~lp~L~~L~l~~c~~L~~lp~~----l~~l~~L~~L~l~~c 881 (915)
..+++|+.|+++++ .+..++.. ..+..+++|+.|++.+|+ +..+|.. +..+++|+.|++++|
T Consensus 85 -----------~~l~~L~~L~L~~N-~i~~~~~~-~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 85 -----------QALPDLTELILTNN-SLVELGDL-DPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp -----------HHCTTCCEEECCSC-CCCCGGGG-GGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred -----------hcCCCCCEEECCCC-cCCcchhh-HhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcC
Confidence 37889999999987 35555421 125689999999999995 6788875 788999999999999
Q ss_pred cchh
Q 038751 882 PIVQ 885 (915)
Q Consensus 882 ~~l~ 885 (915)
+.-.
T Consensus 151 ~~~~ 154 (176)
T 1a9n_A 151 KLKE 154 (176)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 7643
No 126
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.81 E-value=3.8e-09 Score=121.98 Aligned_cols=83 Identities=19% Similarity=0.228 Sum_probs=56.7
Q ss_pred ceEEEEEEccccccCccccCCCCceeEEEeccCCCCceeccccchhccccCCcceeeecCCCCCccccccccCCCcCCCc
Q 038751 534 KLRHLMLVLGFWAKFPFSIFDAKTLHSLILVYSSNNQVAASPVLQGLFDQLTCLRALKIEDLPPTIKIPKGLENLIHLRY 613 (915)
Q Consensus 534 ~~r~Lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~lrv~~~~lp~~i~~L~~Lr~L~l~~~~~~~~lP~~i~~L~~Lr~ 613 (915)
.++.|++.++.+..+|..+ .++|++|.+.+| .+..+| +.+.+|++|++++|... .+|. +.+ +|++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N------~l~~ip---~~l~~L~~L~Ls~N~l~-~ip~-l~~--~L~~ 124 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQN------ALISLP---ELPASLEYLDACDNRLS-TLPE-LPA--SLKH 124 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC--CTTCSEEECCSS------CCSCCC---CCCTTCCEEECCSSCCS-CCCC-CCT--TCCE
T ss_pred CccEEEeCCCCCCccCHhH--cCCCCEEECcCC------CCcccc---cccCCCCEEEccCCCCC-Ccch-hhc--CCCE
Confidence 5777888888777666655 377888888887 455677 55788888888888776 5777 655 7777
Q ss_pred ccCc-----ccCCcCCCCCCCCccCc
Q 038751 614 LKLS-----MVPNGIERLTSLRTLSE 634 (915)
Q Consensus 614 L~l~-----~lP~~i~~L~~L~~L~~ 634 (915)
|+++ .+|. .+++|++|++
T Consensus 125 L~Ls~N~l~~lp~---~l~~L~~L~L 147 (571)
T 3cvr_A 125 LDVDNNQLTMLPE---LPALLEYINA 147 (571)
T ss_dssp EECCSSCCSCCCC---CCTTCCEEEC
T ss_pred EECCCCcCCCCCC---cCccccEEeC
Confidence 7743 3443 3455555544
No 127
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.80 E-value=2.6e-08 Score=99.95 Aligned_cols=129 Identities=21% Similarity=0.280 Sum_probs=95.1
Q ss_pred CCCcceEEEeeeCCCCCCC-cccCccCccEEEEcCcCCCCCCCC--CCCCCCcceeeccccccceEeCccccCCcccccc
Q 038751 729 PPDIKSLEIMVFKGRTPSN-WIGSLNKLKMLTLNSFVKCEIMPP--LGKLPSLEILRIWHMRSVKRVGDEFLGMEISDHI 805 (915)
Q Consensus 729 ~~~L~~L~l~~~~~~~~p~-~~~~l~~L~~L~L~~~~~~~~l~~--l~~Lp~L~~L~L~~~~~l~~~~~~~~~~~~l~~l 805 (915)
+++|+.|+++++....+|. .+..+++|++|+|++|... .++. ++.+++|++|+++++. ++.++...
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~--------- 95 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQ-LQSLPNGV--------- 95 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC-CCCCCTTT---------
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECCCCc-CCccCHhH---------
Confidence 4689999999998777654 4678999999999988543 4443 6789999999998875 55554332
Q ss_pred cccccCCCcccccCcccceeeecCcccccccccCCCCcccCcccceeecccCccccCCCcC-CCCCCCcCeEeEcCCc
Q 038751 806 HIHGTSSSSSVIAFPKLQKLELTGMDELEEWDFGNDDITIMPHIKSLYITYCEKLKSLPEL-LLRSTTLESLTIFGVP 882 (915)
Q Consensus 806 ~l~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~lp~L~~L~l~~c~~L~~lp~~-l~~l~~L~~L~l~~c~ 882 (915)
+..+++|+.|++.++ .+..+. +..+..+++|+.|++++| .+..+|.. +..+++|++|++++|+
T Consensus 96 ----------~~~l~~L~~L~L~~N-~l~~~~--~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 96 ----------FDKLTQLKELALNTN-QLQSLP--DGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp ----------TTTCTTCCEEECCSS-CCCCCC--TTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred ----------hcCccCCCEEEcCCC-cCcccC--HhHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCCC
Confidence 246788999998876 344443 222457899999999988 56777754 6778999999998864
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.79 E-value=1.8e-09 Score=102.07 Aligned_cols=129 Identities=20% Similarity=0.289 Sum_probs=98.9
Q ss_pred CCCCCcceEEEeeeCCC--CCCCcccCccCccEEEEcCcCCCCCCCCCCCCCCcceeeccccccceE-eCccccCCcccc
Q 038751 727 RPPPDIKSLEIMVFKGR--TPSNWIGSLNKLKMLTLNSFVKCEIMPPLGKLPSLEILRIWHMRSVKR-VGDEFLGMEISD 803 (915)
Q Consensus 727 ~~~~~L~~L~l~~~~~~--~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~Lp~L~~L~L~~~~~l~~-~~~~~~~~~~l~ 803 (915)
..+++|+.|++++|... .+|..+..+++|+.|++++|. +..++.++.+++|++|++++|. +.. ++..
T Consensus 14 ~~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~-------- 83 (149)
T 2je0_A 14 RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-LTSIANLPKLNKLKKLELSDNR-VSGGLEVL-------- 83 (149)
T ss_dssp CCGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC-CCCCTTCCCCTTCCEEECCSSC-CCSCTHHH--------
T ss_pred CCCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC-CCCchhhhcCCCCCEEECCCCc-ccchHHHH--------
Confidence 34688999999999887 788888899999999999985 3444788999999999999886 333 2221
Q ss_pred cccccccCCCcccccCcccceeeecCcccccccccCCCCcccCcccceeecccCccccCCCc----CCCCCCCcCeEeEc
Q 038751 804 HIHIHGTSSSSSVIAFPKLQKLELTGMDELEEWDFGNDDITIMPHIKSLYITYCEKLKSLPE----LLLRSTTLESLTIF 879 (915)
Q Consensus 804 ~l~l~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~lp~L~~L~l~~c~~L~~lp~----~l~~l~~L~~L~l~ 879 (915)
...+++|+.|+++++. +..++.. ..+..+++|+.|++++| .+..+|. .+..+++|+.|+++
T Consensus 84 ------------~~~l~~L~~L~ls~N~-i~~~~~~-~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 84 ------------AEKCPNLTHLNLSGNK-IKDLSTI-EPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ------------HHHCTTCCEEECTTSC-CCSHHHH-GGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ------------hhhCCCCCEEECCCCc-CCChHHH-HHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCC
Confidence 2358899999999874 5444211 12568999999999999 5677775 57788999999876
Q ss_pred C
Q 038751 880 G 880 (915)
Q Consensus 880 ~ 880 (915)
+
T Consensus 149 d 149 (149)
T 2je0_A 149 D 149 (149)
T ss_dssp C
T ss_pred C
Confidence 4
No 129
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.78 E-value=6.7e-09 Score=108.36 Aligned_cols=61 Identities=20% Similarity=0.175 Sum_probs=48.9
Q ss_pred hcCCCCCcceEEEeeeCCCCCCCcccCccCccEEEEcCcCCCCCCCCCCCCCCcceeeccccc
Q 038751 725 ALRPPPDIKSLEIMVFKGRTPSNWIGSLNKLKMLTLNSFVKCEIMPPLGKLPSLEILRIWHMR 787 (915)
Q Consensus 725 ~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~Lp~L~~L~L~~~~ 787 (915)
.+..+++|+.|++++|....+| .+..+++|+.|+|++|... .++.++.+++|++|++++++
T Consensus 123 ~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~-~~~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 123 SLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEIT-NTGGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp GGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCC-BCTTSTTCCCCCEEEEEEEE
T ss_pred hhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCc-chHHhccCCCCCEEeCCCCc
Confidence 4566788888888888877776 5778999999999988543 34778899999999998876
No 130
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.77 E-value=3.6e-08 Score=106.57 Aligned_cols=185 Identities=15% Similarity=0.100 Sum_probs=115.4
Q ss_pred CccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCC-CeEEEEEeCCCCCHHHHHHHH
Q 038751 171 SDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENF-DKRIWVCVSDPFDEFRIAKAI 249 (915)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~vs~~~~~~~~~~~i 249 (915)
.+++|++..++.+..++... ..+.+.++|++|+||||+|+.+++... ...+ ...+.+..+..... ...+.
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~-~~~~~- 95 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTG------SMPHLLFAGPPGVGKTTAALALARELF-GENWRHNFLELNASDERGI-NVIRE- 95 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHT------CCCEEEEESCTTSSHHHHHHHHHHHHH-GGGHHHHEEEEETTCHHHH-HTTHH-
T ss_pred HHhhCCHHHHHHHHHHHHcC------CCCeEEEECcCCCCHHHHHHHHHHHhc-CCcccCceEEeeccccCch-HHHHH-
Confidence 46999999999999988643 233489999999999999999987421 1111 11233333321100 00011
Q ss_pred HHHhhCCCCCcccHHHHHHHHHHH--h-ccCeEEEEEeCCCCCCccChhhhHHhhhcCCCCceEEEEcCchHH-Hh-hhc
Q 038751 250 IEGLEGSLPNLRELNSLLEYIHTS--I-KEKKFFLILDDVWPDDYSKWEPFHNCLMNGLCGSRILVTTRKETV-AR-MME 324 (915)
Q Consensus 250 ~~~l~~~~~~~~~~~~~~~~l~~~--l-~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v-~~-~~~ 324 (915)
....+... + .+++.++|+||++......++.+...+.....++++|+||..... .. ...
T Consensus 96 ----------------~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~s 159 (327)
T 1iqp_A 96 ----------------KVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQS 159 (327)
T ss_dssp ----------------HHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHH
T ss_pred ----------------HHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHh
Confidence 11111110 1 256789999999765555667777777766677889988876431 11 112
Q ss_pred CcCeEeCCCCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCCCchHHHHHHhHh
Q 038751 325 STDVISIKELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKGLPLAAKTIGSLL 384 (915)
Q Consensus 325 ~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~PLai~~~~~~l 384 (915)
....+++.+++.++...++...+...+-... .+..+.|++.++|.|..+..+...+
T Consensus 160 r~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~----~~~~~~l~~~~~g~~r~~~~~l~~~ 215 (327)
T 1iqp_A 160 RCAIFRFRPLRDEDIAKRLRYIAENEGLELT----EEGLQAILYIAEGDMRRAINILQAA 215 (327)
T ss_dssp TEEEEECCCCCHHHHHHHHHHHHHTTTCEEC----HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hCcEEEecCCCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 2347899999999999999887643322111 2445678888999998765544433
No 131
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.75 E-value=3e-10 Score=125.04 Aligned_cols=92 Identities=15% Similarity=-0.027 Sum_probs=53.1
Q ss_pred hhccCCC-CCCceEEEEecCCCCchhhhhhhhhHHHHhhHHHHHhhcCCC-CCcceEEEeeeCCCC-----CCCcccC-c
Q 038751 681 AHLEKKK-NLIDLILIFNEREESDDEKASEEMNEEKEAKHEAVCEALRPP-PDIKSLEIMVFKGRT-----PSNWIGS-L 752 (915)
Q Consensus 681 ~~l~~l~-~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~-----~p~~~~~-l 752 (915)
..+.... +|+.|+|++|..... ....+...+... ++|+.|++++|.... ++..+.. .
T Consensus 160 ~~l~~~~~~L~~L~Ls~n~l~~~---------------~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~ 224 (362)
T 3goz_A 160 QILAAIPANVNSLNLRGNNLASK---------------NCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIP 224 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGS---------------CHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSC
T ss_pred HHHhcCCccccEeeecCCCCchh---------------hHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCC
Confidence 3344444 788888877743210 122233344444 478888888776554 3333433 3
Q ss_pred cCccEEEEcCcCCCCCC-----CCCCCCCCcceeeccccc
Q 038751 753 NKLKMLTLNSFVKCEIM-----PPLGKLPSLEILRIWHMR 787 (915)
Q Consensus 753 ~~L~~L~L~~~~~~~~l-----~~l~~Lp~L~~L~L~~~~ 787 (915)
++|++|+|++|.....- ..+..+++|++|++++|.
T Consensus 225 ~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 225 NHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp TTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred CCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCC
Confidence 57888888877432211 124667788888887775
No 132
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.75 E-value=1.1e-08 Score=118.08 Aligned_cols=137 Identities=12% Similarity=0.123 Sum_probs=82.0
Q ss_pred CCCcceEEEeeeCCCCCCCcccCccCccEEEEcCcCCCCCCCCCCCCCCcceeeccccccceEeCccccCCccccccccc
Q 038751 729 PPDIKSLEIMVFKGRTPSNWIGSLNKLKMLTLNSFVKCEIMPPLGKLPSLEILRIWHMRSVKRVGDEFLGMEISDHIHIH 808 (915)
Q Consensus 729 ~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~Lp~L~~L~L~~~~~l~~~~~~~~~~~~l~~l~l~ 808 (915)
+++|+.|++++|....+|. +.. +|++|+|++|.. ..+|. .+++|++|+|++|. ++.+|. ....++.|+++
T Consensus 99 l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~l-~~lp~--~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls 168 (571)
T 3cvr_A 99 PASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQL-TMLPE--LPALLEYINADNNQ-LTMLPE---LPTSLEVLSVR 168 (571)
T ss_dssp CTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSCC-SCCCC--CCTTCCEEECCSSC-CSCCCC---CCTTCCEEECC
T ss_pred cCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCcC-CCCCC--cCccccEEeCCCCc-cCcCCC---cCCCcCEEECC
Confidence 4556666666655555555 332 666666665532 22444 56666677666655 444554 34556666776
Q ss_pred ccCCCcccccCcccceeeecCcccccccccCCCCcccCccc-------ceeecccCccccCCCcCCCCCCCcCeEeEcCC
Q 038751 809 GTSSSSSVIAFPKLQKLELTGMDELEEWDFGNDDITIMPHI-------KSLYITYCEKLKSLPELLLRSTTLESLTIFGV 881 (915)
Q Consensus 809 ~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~lp~L-------~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~c 881 (915)
+|.+.....-.++|+.|+++++ .+..++. +.. +| +.|++++| .+..+|..+..+++|+.|++++|
T Consensus 169 ~N~L~~lp~l~~~L~~L~Ls~N-~L~~lp~----~~~--~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~L~~N 240 (571)
T 3cvr_A 169 NNQLTFLPELPESLEALDVSTN-LLESLPA----VPV--RNHHSEETEIFFRCREN-RITHIPENILSLDPTCTIILEDN 240 (571)
T ss_dssp SSCCSCCCCCCTTCCEEECCSS-CCSSCCC----CC----------CCEEEECCSS-CCCCCCGGGGGSCTTEEEECCSS
T ss_pred CCCCCCcchhhCCCCEEECcCC-CCCchhh----HHH--hhhcccccceEEecCCC-cceecCHHHhcCCCCCEEEeeCC
Confidence 6654321111157777777765 3444332 111 55 88999888 67889988888999999999998
Q ss_pred cc
Q 038751 882 PI 883 (915)
Q Consensus 882 ~~ 883 (915)
+.
T Consensus 241 ~l 242 (571)
T 3cvr_A 241 PL 242 (571)
T ss_dssp SC
T ss_pred cC
Confidence 75
No 133
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.72 E-value=6.6e-08 Score=98.48 Aligned_cols=151 Identities=15% Similarity=0.163 Sum_probs=110.4
Q ss_pred CcceEEEeeeCCCCCCCcccCccCccEEEEcCcCCCCCCC-CCCCCCCcceeeccccccceEeCccccCCcccccccccc
Q 038751 731 DIKSLEIMVFKGRTPSNWIGSLNKLKMLTLNSFVKCEIMP-PLGKLPSLEILRIWHMRSVKRVGDEFLGMEISDHIHIHG 809 (915)
Q Consensus 731 ~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~-~l~~Lp~L~~L~L~~~~~l~~~~~~~~~~~~l~~l~l~~ 809 (915)
..+.++..++....+|..+ .++|++|+|++|......| .++.+++|++|+|+++. ++.++...
T Consensus 20 s~~~v~c~~~~l~~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~------------- 83 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ-LGALPVGV------------- 83 (229)
T ss_dssp ETTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTT-------------
T ss_pred eCCEeEccCCCcCccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC-CCCcChhh-------------
Confidence 4566777777777788654 4899999999986554433 37899999999999987 56555432
Q ss_pred cCCCcccccCcccceeeecCcccccccccCCCCcccCcccceeecccCccccCCCcCCCCCCCcCeEeEcCCcchhHhhc
Q 038751 810 TSSSSSVIAFPKLQKLELTGMDELEEWDFGNDDITIMPHIKSLYITYCEKLKSLPELLLRSTTLESLTIFGVPIVQESFK 889 (915)
Q Consensus 810 ~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~lp~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~c~~l~~~~~ 889 (915)
+..+++|+.|+++++ .+..+. +..+..+++|+.|++++| ++..+|..+.++++|++|++++|..-
T Consensus 84 ------~~~l~~L~~L~Ls~N-~l~~l~--~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L~~N~l~----- 148 (229)
T 3e6j_A 84 ------FDSLTQLTVLDLGTN-QLTVLP--SAVFDRLVHLKELFMCCN-KLTELPRGIERLTHLTHLALDQNQLK----- 148 (229)
T ss_dssp ------TTTCTTCCEEECCSS-CCCCCC--TTTTTTCTTCCEEECCSS-CCCSCCTTGGGCTTCSEEECCSSCCC-----
T ss_pred ------cccCCCcCEEECCCC-cCCccC--hhHhCcchhhCeEeccCC-cccccCcccccCCCCCEEECCCCcCC-----
Confidence 247899999999986 455443 222458999999999988 68899999999999999999998441
Q ss_pred cCCCCCcccccCCCcceeccccc
Q 038751 890 RRTEKDWSKISHIPNIKIQNIVF 912 (915)
Q Consensus 890 ~~~~~~~~~i~~ip~v~~~~~~~ 912 (915)
......+..+..+..+.+.+|.+
T Consensus 149 ~~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 149 SIPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp CCCTTTTTTCTTCCEEECTTSCB
T ss_pred ccCHHHHhCCCCCCEEEeeCCCc
Confidence 11112344556666666666654
No 134
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.68 E-value=8.3e-08 Score=97.05 Aligned_cols=144 Identities=15% Similarity=0.194 Sum_probs=92.2
Q ss_pred ceEEEeeeCCCCCCCcccCccCccEEEEcCcCCCCCCCC--CCCCCCcceeeccccccceEeCc-cccCCcccccccccc
Q 038751 733 KSLEIMVFKGRTPSNWIGSLNKLKMLTLNSFVKCEIMPP--LGKLPSLEILRIWHMRSVKRVGD-EFLGMEISDHIHIHG 809 (915)
Q Consensus 733 ~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~--l~~Lp~L~~L~L~~~~~l~~~~~-~~~~~~~l~~l~l~~ 809 (915)
+.++++++....+|..+ .+.+++|+|++|......+. ++.+++|++|+|+++. ++.++. .+.....++.|++++
T Consensus 14 ~~l~~s~n~l~~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK-ITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcccCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc-CCEECHHHhCCCCCCCEEECCC
Confidence 35555555555555433 33456666666543222221 4566666666666655 444443 344555666666666
Q ss_pred cCCCc----ccccCcccceeeecCcccccccccCCCCcccCcccceeecccCccccCC-CcCCCCCCCcCeEeEcCCcc
Q 038751 810 TSSSS----SVIAFPKLQKLELTGMDELEEWDFGNDDITIMPHIKSLYITYCEKLKSL-PELLLRSTTLESLTIFGVPI 883 (915)
Q Consensus 810 ~~~~~----~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~lp~L~~L~l~~c~~L~~l-p~~l~~l~~L~~L~l~~c~~ 883 (915)
|.+.. .+..+++|++|+++++. +..+. +..+..+++|+.|++++| .+..+ |..+..+++|+.|+++++|-
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~--~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNR-ITCVG--NDSFIGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSC-CCCBC--TTSSTTCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred CccCccCHhHhcCCcCCCEEECCCCc-CCeEC--HhHcCCCccCCEEECCCC-cCCEECHHHhcCCCCCCEEEecCcCC
Confidence 64432 24578899999999863 44432 233668999999999998 56666 77889999999999999863
No 135
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.66 E-value=2.6e-07 Score=101.81 Aligned_cols=195 Identities=13% Similarity=0.185 Sum_probs=114.1
Q ss_pred CccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 038751 171 SDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAII 250 (915)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 250 (915)
.+++|++..++.+...+.... ..+.+.|+|++|+||||+|+.+.+.......+. ...+........+.
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~-----~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~-------~~~~~~~~~~~~~~ 83 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT-------ATPCGVCDNCREIE 83 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTC-----CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC-------SSCCSSSHHHHHHH
T ss_pred hhccCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC-------CCCCcccHHHHHHh
Confidence 459999999999999986432 235788999999999999999877422111110 00000000111111
Q ss_pred HHh-------hCC-CCCcccHHHHHHHHHHH-hccCeEEEEEeCCCCCCccChhhhHHhhhcCCCCceEEEEcCchH-HH
Q 038751 251 EGL-------EGS-LPNLRELNSLLEYIHTS-IKEKKFFLILDDVWPDDYSKWEPFHNCLMNGLCGSRILVTTRKET-VA 320 (915)
Q Consensus 251 ~~l-------~~~-~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~-v~ 320 (915)
... ... .....+...+...+... ..+++.++|+||++.-+...++.+...+.....+..+|++|.... +.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~ 163 (373)
T 1jr3_A 84 QGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (373)
T ss_dssp TSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSC
T ss_pred ccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCc
Confidence 000 000 01112222222221111 135678999999966555566777777766666777777776432 11
Q ss_pred -hhhcCcCeEeCCCCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCCCchHHHHHH
Q 038751 321 -RMMESTDVISIKELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKGLPLAAKTIG 381 (915)
Q Consensus 321 -~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~PLai~~~~ 381 (915)
........+++.+++.++...++...+...+.... .+....|++.++|.|..+..+.
T Consensus 164 ~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~~----~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 164 VTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE----PRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp HHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBC----HHHHHHHHHHSSSCHHHHHHHH
T ss_pred HHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHCCCCHHHHHHHH
Confidence 11223468999999999999999876532111111 2345678899999999876654
No 136
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.59 E-value=3.4e-07 Score=92.54 Aligned_cols=149 Identities=11% Similarity=0.144 Sum_probs=106.1
Q ss_pred ceEEEeeeCCCCCCCcccCccCccEEEEcCcCCCCCCC-CCCCCCCcceeeccccccceEeCccccCCcccccccccccC
Q 038751 733 KSLEIMVFKGRTPSNWIGSLNKLKMLTLNSFVKCEIMP-PLGKLPSLEILRIWHMRSVKRVGDEFLGMEISDHIHIHGTS 811 (915)
Q Consensus 733 ~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~-~l~~Lp~L~~L~L~~~~~l~~~~~~~~~~~~l~~l~l~~~~ 811 (915)
+.+++.++....+|..+ .++|+.|+|++|......+ .++.+++|++|+|+++. +..+....
T Consensus 14 ~~v~c~~~~l~~iP~~l--~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~-i~~~~~~~--------------- 75 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNL--PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQ-ISELAPDA--------------- 75 (220)
T ss_dssp TEEECTTSCCSSCCSSC--CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSC-CCEECTTT---------------
T ss_pred CEEEcCCCCcCcCCCcc--CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCc-CCCcCHHH---------------
Confidence 45677777777788654 3789999999985443333 47889999999999986 55553221
Q ss_pred CCcccccCcccceeeecCcccccccccCCCCcccCcccceeecccCccccCC-CcCCCCCCCcCeEeEcCCcchhHhhcc
Q 038751 812 SSSSVIAFPKLQKLELTGMDELEEWDFGNDDITIMPHIKSLYITYCEKLKSL-PELLLRSTTLESLTIFGVPIVQESFKR 890 (915)
Q Consensus 812 ~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~lp~L~~L~l~~c~~L~~l-p~~l~~l~~L~~L~l~~c~~l~~~~~~ 890 (915)
+..+++|+.|+++++ .+..++ +..+..+++|+.|++++| .+..+ |..+..+++|++|++++|..- .
T Consensus 76 ----~~~l~~L~~L~Ls~N-~l~~l~--~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~-----~ 142 (220)
T 2v9t_B 76 ----FQGLRSLNSLVLYGN-KITELP--KSLFEGLFSLQLLLLNAN-KINCLRVDAFQDLHNLNLLSLYDNKLQ-----T 142 (220)
T ss_dssp ----TTTCSSCCEEECCSS-CCCCCC--TTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCS-----C
T ss_pred ----hhCCcCCCEEECCCC-cCCccC--HhHccCCCCCCEEECCCC-CCCEeCHHHcCCCCCCCEEECCCCcCC-----E
Confidence 347889999999986 355443 222457999999999999 56666 567889999999999998641 1
Q ss_pred CCCCCcccccCCCcceeccccc
Q 038751 891 RTEKDWSKISHIPNIKIQNIVF 912 (915)
Q Consensus 891 ~~~~~~~~i~~ip~v~~~~~~~ 912 (915)
.....+....++..+.+.+|.+
T Consensus 143 ~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 143 IAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CCTTTTTTCTTCCEEECCSSCE
T ss_pred ECHHHHhCCCCCCEEEeCCCCc
Confidence 1222345566677777777655
No 137
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.58 E-value=2.6e-08 Score=119.43 Aligned_cols=83 Identities=12% Similarity=-0.001 Sum_probs=26.6
Q ss_pred cceEEEEEEccccccCccccCCCCceeEEEeccCCCCceeccccchhccccCCcceeeecCCCCCccccccccCCCcCCC
Q 038751 533 EKLRHLMLVLGFWAKFPFSIFDAKTLHSLILVYSSNNQVAASPVLQGLFDQLTCLRALKIEDLPPTIKIPKGLENLIHLR 612 (915)
Q Consensus 533 ~~~r~Lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~lrv~~~~lp~~i~~L~~Lr~L~l~~~~~~~~lP~~i~~L~~Lr 612 (915)
..++++++..+.....+..+....+|+.+.+..... ..-.+...|..+..+.+|++|+|++|... .+|..+.+|.+|+
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~-~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~ 250 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDD-IENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLT 250 (727)
T ss_dssp --------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCS
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCccc-cccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCC
Confidence 557888887777665555554555555544433110 00023345778889999999999988876 7777777777777
Q ss_pred cccCc
Q 038751 613 YLKLS 617 (915)
Q Consensus 613 ~L~l~ 617 (915)
+|+|+
T Consensus 251 ~L~Ls 255 (727)
T 4b8c_D 251 RLYLN 255 (727)
T ss_dssp CCBCT
T ss_pred EEEee
Confidence 77643
No 138
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.58 E-value=1.3e-07 Score=103.70 Aligned_cols=152 Identities=18% Similarity=0.235 Sum_probs=110.3
Q ss_pred CCCcceEEEeeeCCCCCC-Cccc-CccCccEEEEcCcCCCCCCC-CCCCCCCcceeeccccccceEeCcc-ccCCccccc
Q 038751 729 PPDIKSLEIMVFKGRTPS-NWIG-SLNKLKMLTLNSFVKCEIMP-PLGKLPSLEILRIWHMRSVKRVGDE-FLGMEISDH 804 (915)
Q Consensus 729 ~~~L~~L~l~~~~~~~~p-~~~~-~l~~L~~L~L~~~~~~~~l~-~l~~Lp~L~~L~L~~~~~l~~~~~~-~~~~~~l~~ 804 (915)
++.++.|++++|....+| .++. .+++|++|+|++|......+ .++.+++|++|+|++|. ++.++.. +.....++.
T Consensus 38 ~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~ 116 (361)
T 2xot_A 38 PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH-LHTLDEFLFSDLQALEV 116 (361)
T ss_dssp CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCE
T ss_pred CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc-CCcCCHHHhCCCcCCCE
Confidence 456899999999887764 4565 89999999999985443333 38899999999999987 7777654 556788889
Q ss_pred ccccccCCC----cccccCcccceeeecCcccccccccCC-CCcccCcccceeecccCccccCCC-cCCCCCCC--cCeE
Q 038751 805 IHIHGTSSS----SSVIAFPKLQKLELTGMDELEEWDFGN-DDITIMPHIKSLYITYCEKLKSLP-ELLLRSTT--LESL 876 (915)
Q Consensus 805 l~l~~~~~~----~~~~~f~~L~~L~l~~~~~l~~~~~~~-~~~~~lp~L~~L~l~~c~~L~~lp-~~l~~l~~--L~~L 876 (915)
|++++|.+. ..+..+++|+.|++.++ .+..++... .....+++|+.|++++| .+..+| ..+..++. |+.|
T Consensus 117 L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~~~l~~l 194 (361)
T 2xot_A 117 LLLYNNHIVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSN-KLKKLPLTDLQKLPAWVKNGL 194 (361)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSS-CCCCCCHHHHHHSCHHHHTTE
T ss_pred EECCCCcccEECHHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCC-CCCccCHHHhhhccHhhcceE
Confidence 999988654 34567889999999886 355444211 00136889999999988 677887 34555665 4889
Q ss_pred eEcCCcc
Q 038751 877 TIFGVPI 883 (915)
Q Consensus 877 ~l~~c~~ 883 (915)
++.++|-
T Consensus 195 ~l~~N~~ 201 (361)
T 2xot_A 195 YLHNNPL 201 (361)
T ss_dssp ECCSSCE
T ss_pred EecCCCc
Confidence 9988664
No 139
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.57 E-value=1.8e-07 Score=92.33 Aligned_cols=125 Identities=18% Similarity=0.151 Sum_probs=87.6
Q ss_pred ceEEEeeeCCCCCCCcccCccCccEEEEcCcCCCCCCCC--CCCCCCcceeeccccccceEeCccccCCccccccccccc
Q 038751 733 KSLEIMVFKGRTPSNWIGSLNKLKMLTLNSFVKCEIMPP--LGKLPSLEILRIWHMRSVKRVGDEFLGMEISDHIHIHGT 810 (915)
Q Consensus 733 ~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~--l~~Lp~L~~L~L~~~~~l~~~~~~~~~~~~l~~l~l~~~ 810 (915)
+.++++++....+|..+ ..+|+.|++++|......+. ++.+++|++|+|+++. ++.+....
T Consensus 11 ~~l~~s~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~-------------- 73 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ-LTGIEPNA-------------- 73 (192)
T ss_dssp TEEECTTSCCSSCCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSC-CCCBCTTT--------------
T ss_pred CEEEcCCCCcCcCccCC--CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCC-CCCcCHhH--------------
Confidence 67788888777788654 34889999988854433332 7788999999998876 44442211
Q ss_pred CCCcccccCcccceeeecCcccccccccCCCCcccCcccceeecccCccccCCCcCCCCCCCcCeEeEcCCc
Q 038751 811 SSSSSVIAFPKLQKLELTGMDELEEWDFGNDDITIMPHIKSLYITYCEKLKSLPELLLRSTTLESLTIFGVP 882 (915)
Q Consensus 811 ~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~lp~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~c~ 882 (915)
+..+++|+.|+++++ .+..+. +..+..+++|+.|++++|..-...|..+..+++|++|+++++|
T Consensus 74 -----~~~l~~L~~L~Ls~N-~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 74 -----FEGASHIQELQLGEN-KIKEIS--NKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp -----TTTCTTCCEEECCSC-CCCEEC--SSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred -----cCCcccCCEEECCCC-cCCccC--HHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 346788888888876 344443 2225578899999999884433457778888999999998875
No 140
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.57 E-value=5.8e-08 Score=97.34 Aligned_cols=154 Identities=16% Similarity=0.091 Sum_probs=100.5
Q ss_pred CCCCceEEEEecCCCCchhhhhhhhhHHHHhhHHHHHhhcCCCCCcceEEEeeeCCCCCCC-cccCccCccEEEEcCcCC
Q 038751 687 KNLIDLILIFNEREESDDEKASEEMNEEKEAKHEAVCEALRPPPDIKSLEIMVFKGRTPSN-WIGSLNKLKMLTLNSFVK 765 (915)
Q Consensus 687 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~-~~~~l~~L~~L~L~~~~~ 765 (915)
.+|+.|+++.|.... .....+..+++|+.|++.+|....+|. .+..+++|++|+|++|..
T Consensus 28 ~~l~~L~l~~n~l~~-------------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 88 (208)
T 2o6s_A 28 AQTTYLDLETNSLKS-------------------LPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL 88 (208)
T ss_dssp TTCSEEECCSSCCCC-------------------CCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCCcEEEcCCCccCc-------------------CChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcC
Confidence 478889988875321 011235678999999999998887765 467899999999999854
Q ss_pred CCCCCC--CCCCCCcceeeccccccceEeCcc-ccCCcccccccccccCCCc----ccccCcccceeeecCccccccccc
Q 038751 766 CEIMPP--LGKLPSLEILRIWHMRSVKRVGDE-FLGMEISDHIHIHGTSSSS----SVIAFPKLQKLELTGMDELEEWDF 838 (915)
Q Consensus 766 ~~~l~~--l~~Lp~L~~L~L~~~~~l~~~~~~-~~~~~~l~~l~l~~~~~~~----~~~~f~~L~~L~l~~~~~l~~~~~ 838 (915)
. .++. ++.+++|++|+++++. ++.++.. +.....++.+++++|.... .+..+++|+.|++.+++ |
T Consensus 89 ~-~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~----~-- 160 (208)
T 2o6s_A 89 Q-SLPNGVFDKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP----W-- 160 (208)
T ss_dssp C-CCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC----B--
T ss_pred C-ccCHhHhcCccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCC----e--
Confidence 4 4443 6899999999999886 6666554 3345556666666654322 12345566666665542 1
Q ss_pred CCCCcccCcccceeecccCccccCCCcCCCCCC
Q 038751 839 GNDDITIMPHIKSLYITYCEKLKSLPELLLRST 871 (915)
Q Consensus 839 ~~~~~~~lp~L~~L~l~~c~~L~~lp~~l~~l~ 871 (915)
.+.+|+|+.|.+..+..-+.+|..+..++
T Consensus 161 ----~~~~~~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 161 ----DCTCPGIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp ----CCCTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred ----ecCCCCHHHHHHHHHhCCceeeccCcccc
Confidence 12455666666666655556666555443
No 141
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.56 E-value=3.4e-07 Score=98.51 Aligned_cols=182 Identities=15% Similarity=0.066 Sum_probs=110.9
Q ss_pred CccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCC-eEEEEEeCCCCCHHHHHHHH
Q 038751 171 SDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFD-KRIWVCVSDPFDEFRIAKAI 249 (915)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i 249 (915)
.+++|++..++.+.+++... ..+.+.++|++|+|||++|+.+++... ...+. ..+.++.+....
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~-------- 81 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERK------NIPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERG-------- 81 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTT------CCCCEEEESSSSSSHHHHHHHHHHHHH-TTCHHHHCEEEETTSTTC--------
T ss_pred HHHhCCHHHHHHHHHHHhCC------CCCeEEEECcCCcCHHHHHHHHHHHhc-CCcccCCeEEEeCccccC--------
Confidence 46899999999998888542 233389999999999999999887421 11111 122333332111
Q ss_pred HHHhhCCCCCcccHHHHHHHHHHH--h-ccCeEEEEEeCCCCCCccChhhhHHhhhcCCCCceEEEEcCchH-HHh-hhc
Q 038751 250 IEGLEGSLPNLRELNSLLEYIHTS--I-KEKKFFLILDDVWPDDYSKWEPFHNCLMNGLCGSRILVTTRKET-VAR-MME 324 (915)
Q Consensus 250 ~~~l~~~~~~~~~~~~~~~~l~~~--l-~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~-v~~-~~~ 324 (915)
..........+... + .+++.++|+||+..-.....+.+...+.....+.++|+||.... +.. ...
T Consensus 82 ----------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~s 151 (319)
T 2chq_A 82 ----------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQS 151 (319)
T ss_dssp ----------TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHT
T ss_pred ----------hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHh
Confidence 01111111111111 1 25678999999965444445556666655556778888876543 111 122
Q ss_pred CcCeEeCCCCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCCCchHHHHHH
Q 038751 325 STDVISIKELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKGLPLAAKTIG 381 (915)
Q Consensus 325 ~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~PLai~~~~ 381 (915)
....+++.+++.++...++...+...+-... .+..+.+++.++|.+..+....
T Consensus 152 r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~----~~~l~~l~~~~~G~~r~~~~~l 204 (319)
T 2chq_A 152 RCAVFRFKPVPKEAMKKRLLEICEKEGVKIT----EDGLEALIYISGGDFRKAINAL 204 (319)
T ss_dssp TCEEEECCCCCHHHHHHHHHHHHHTTCCCBC----HHHHHHHHHTTTTCHHHHHHHH
T ss_pred hCeEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHH
Confidence 3458999999999999999887643322112 2345678888999998655443
No 142
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.55 E-value=3.5e-07 Score=90.14 Aligned_cols=151 Identities=16% Similarity=0.150 Sum_probs=84.0
Q ss_pred CccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccc---c--CCCeEEEEEeCCCCCHHHH
Q 038751 171 SDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVI---E--NFDKRIWVCVSDPFDEFRI 245 (915)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~--~F~~~~wv~vs~~~~~~~~ 245 (915)
..++||+++++++.+.+... ..+.+.|+|++|+|||++|+.+++..... . .....+++.++. +
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 89 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRR------TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA------L 89 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------SSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHH------H
T ss_pred cccccchHHHHHHHHHHhcC------CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHH------H
Confidence 46899999999999998653 34567899999999999999998742110 0 112234443321 1
Q ss_pred HHHHHHHhhCCCCCcccHHHHHHHHHHHh--ccCeEEEEEeCCCCCC--------ccChhhhHHhhhcCCCCceEEEEcC
Q 038751 246 AKAIIEGLEGSLPNLRELNSLLEYIHTSI--KEKKFFLILDDVWPDD--------YSKWEPFHNCLMNGLCGSRILVTTR 315 (915)
Q Consensus 246 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdvw~~~--------~~~~~~l~~~l~~~~~gs~iivTtR 315 (915)
.... ............+.+.+ .+++.+||+||++... ....+.+...+.. .+..+|.||.
T Consensus 90 -------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~--~~~~~i~~~~ 159 (195)
T 1jbk_A 90 -------VAGA-KYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR--GELHCVGATT 159 (195)
T ss_dssp -------HTTT-CSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHT--TSCCEEEEEC
T ss_pred -------hccC-CccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhcc--CCeEEEEeCC
Confidence 0000 01111111111121211 3567899999995431 1223334333332 2456777776
Q ss_pred chHHHh-------hhcCcCeEeCCCCCHHHHHHHH
Q 038751 316 KETVAR-------MMESTDVISIKELSEQECWSLF 343 (915)
Q Consensus 316 ~~~v~~-------~~~~~~~~~l~~L~~~~~~~lf 343 (915)
...... .......+.+.+++.++..+++
T Consensus 160 ~~~~~~~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 160 LDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp HHHHHHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred HHHHHHHHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 654321 1122336889999998876654
No 143
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.54 E-value=2.3e-07 Score=91.61 Aligned_cols=124 Identities=15% Similarity=0.139 Sum_probs=84.3
Q ss_pred ceEEEeeeCCCCCCCcccCccCccEEEEcCcCCCCCCC-CCCCCCCcceeeccccccceEeCccccCCcccccccccccC
Q 038751 733 KSLEIMVFKGRTPSNWIGSLNKLKMLTLNSFVKCEIMP-PLGKLPSLEILRIWHMRSVKRVGDEFLGMEISDHIHIHGTS 811 (915)
Q Consensus 733 ~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~-~l~~Lp~L~~L~L~~~~~l~~~~~~~~~~~~l~~l~l~~~~ 811 (915)
+.++++++....+|..+ .++|+.|+|++|... .+| .++.+++|++|+|+++. ++.++...
T Consensus 13 ~~l~~~~~~l~~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~-i~~i~~~~--------------- 73 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNR-ISTLSNQS--------------- 73 (193)
T ss_dssp TEEECTTSCCSSCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSC-CCCCCTTT---------------
T ss_pred CEEEcCCCCCCcCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCc-CCEeCHhH---------------
Confidence 45666666666777543 467888888877533 443 46778888888888765 54444321
Q ss_pred CCcccccCcccceeeecCcccccccccCCCCcccCcccceeecccCccccCCCcC-CCCCCCcCeEeEcCCcc
Q 038751 812 SSSSVIAFPKLQKLELTGMDELEEWDFGNDDITIMPHIKSLYITYCEKLKSLPEL-LLRSTTLESLTIFGVPI 883 (915)
Q Consensus 812 ~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~lp~L~~L~l~~c~~L~~lp~~-l~~l~~L~~L~l~~c~~ 883 (915)
+..+++|+.|+++++. +..+. +..+..+++|+.|++++| .+..+|.. +..+++|+.|++.++|-
T Consensus 74 ----f~~l~~L~~L~Ls~N~-l~~i~--~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 74 ----FSNMTQLLTLILSYNR-LRCIP--PRTFDGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp ----TTTCTTCCEEECCSSC-CCBCC--TTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred ----ccCCCCCCEEECCCCc-cCEeC--HHHhCCCCCCCEEECCCC-CCCeeChhhhhcCccccEEEeCCCCe
Confidence 2367788888887753 44443 223557888999999887 57777764 67788999999888653
No 144
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.54 E-value=2e-08 Score=96.92 Aligned_cols=143 Identities=15% Similarity=0.129 Sum_probs=102.7
Q ss_pred CCCCCCceEEEEecCCCCchhhhhhhhhHHHHhhHHHHHhhcCCCCCcceEEEeeeCCCCCCCcccCccCccEEEEcCcC
Q 038751 685 KKKNLIDLILIFNEREESDDEKASEEMNEEKEAKHEAVCEALRPPPDIKSLEIMVFKGRTPSNWIGSLNKLKMLTLNSFV 764 (915)
Q Consensus 685 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~ 764 (915)
..++|+.|+++.|.... ..+...+..+++|+.|++.+|....+ ..+..+++|++|+|++|.
T Consensus 22 ~~~~L~~L~l~~n~l~~------------------~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~ 82 (168)
T 2ell_A 22 TPAAVRELVLDNCKSND------------------GKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENR 82 (168)
T ss_dssp CTTSCSEEECCSCBCBT------------------TBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCC
T ss_pred CcccCCEEECCCCCCCh------------------hhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCc
Confidence 44789999999886320 11223345678999999999988777 678899999999999997
Q ss_pred CCCCCCCC-CCCCCcceeeccccccceEeCccccCCcccccccccccCCCcccccCcccceeeecCccccccccc-CCCC
Q 038751 765 KCEIMPPL-GKLPSLEILRIWHMRSVKRVGDEFLGMEISDHIHIHGTSSSSSVIAFPKLQKLELTGMDELEEWDF-GNDD 842 (915)
Q Consensus 765 ~~~~l~~l-~~Lp~L~~L~L~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~-~~~~ 842 (915)
....+|.. +.+++|++|++++|. ++.++.. ..+..+++|+.|++.+++ +..++. ....
T Consensus 83 l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~------------------~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~ 142 (168)
T 2ell_A 83 IFGGLDMLAEKLPNLTHLNLSGNK-LKDISTL------------------EPLKKLECLKSLDLFNCE-VTNLNDYRESV 142 (168)
T ss_dssp CCSCCCHHHHHCTTCCEEECBSSS-CCSSGGG------------------GGGSSCSCCCEEECCSSG-GGTSTTHHHHH
T ss_pred CchHHHHHHhhCCCCCEEeccCCc-cCcchhH------------------HHHhcCCCCCEEEeeCCc-CcchHHHHHHH
Confidence 65556654 459999999999986 5544320 113478999999999874 333321 0012
Q ss_pred cccCcccceeecccCccccCCCcCC
Q 038751 843 ITIMPHIKSLYITYCEKLKSLPELL 867 (915)
Q Consensus 843 ~~~lp~L~~L~l~~c~~L~~lp~~l 867 (915)
+..+|+|+.|++.+| ....+|...
T Consensus 143 ~~~l~~L~~L~l~~n-~~~~~~~~~ 166 (168)
T 2ell_A 143 FKLLPQLTYLDGYDR-EDQEAPDSD 166 (168)
T ss_dssp HTTCSSCCEETTEET-TSCBCCSSS
T ss_pred HHhCccCcEecCCCC-Chhhccccc
Confidence 558999999999999 567788653
No 145
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.51 E-value=3.9e-08 Score=107.92 Aligned_cols=149 Identities=19% Similarity=0.185 Sum_probs=107.2
Q ss_pred CCCceEEEEecCCCCchhhhhhhhhHHHHhhHHHHHhhcC-CCCCcceEEEeeeCCCCCC-CcccCccCccEEEEcCcCC
Q 038751 688 NLIDLILIFNEREESDDEKASEEMNEEKEAKHEAVCEALR-PPPDIKSLEIMVFKGRTPS-NWIGSLNKLKMLTLNSFVK 765 (915)
Q Consensus 688 ~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~p-~~~~~l~~L~~L~L~~~~~ 765 (915)
.++.|+|+.|.... .....+. .+++|+.|++++|....+| ..+..+++|++|+|++|..
T Consensus 40 ~l~~L~Ls~N~l~~-------------------l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l 100 (361)
T 2xot_A 40 YTALLDLSHNNLSR-------------------LRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL 100 (361)
T ss_dssp TCSEEECCSSCCCE-------------------ECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CCCEEECCCCCCCc-------------------cChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcC
Confidence 57888888875321 0112344 6899999999999887765 5688999999999999864
Q ss_pred CCCCC-CCCCCCCcceeeccccccceEe-CccccCCcccccccccccCCCcc---c----ccCcccceeeecCccccccc
Q 038751 766 CEIMP-PLGKLPSLEILRIWHMRSVKRV-GDEFLGMEISDHIHIHGTSSSSS---V----IAFPKLQKLELTGMDELEEW 836 (915)
Q Consensus 766 ~~~l~-~l~~Lp~L~~L~L~~~~~l~~~-~~~~~~~~~l~~l~l~~~~~~~~---~----~~f~~L~~L~l~~~~~l~~~ 836 (915)
....+ .++.+++|++|+|++|. +..+ +..+.....|+.|++++|.+... . ..+++|+.|+++++ .+..+
T Consensus 101 ~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l 178 (361)
T 2xot_A 101 HTLDEFLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSN-KLKKL 178 (361)
T ss_dssp CEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSS-CCCCC
T ss_pred CcCCHHHhCCCcCCCEEECCCCc-ccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCC-CCCcc
Confidence 33333 37899999999999987 6665 55666788999999999876431 1 45899999999986 45554
Q ss_pred ccCCCCcccCcc--cceeecccCcc
Q 038751 837 DFGNDDITIMPH--IKSLYITYCEK 859 (915)
Q Consensus 837 ~~~~~~~~~lp~--L~~L~l~~c~~ 859 (915)
+.. .+..++. |+.|++.+++-
T Consensus 179 ~~~--~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 179 PLT--DLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp CHH--HHHHSCHHHHTTEECCSSCE
T ss_pred CHH--HhhhccHhhcceEEecCCCc
Confidence 421 2345666 48899998754
No 146
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.49 E-value=1.3e-07 Score=113.43 Aligned_cols=114 Identities=17% Similarity=0.144 Sum_probs=77.8
Q ss_pred CCCCCcccCccCccEEEEcCcCCCCCCC-CCCCCCCcceeeccccccceEeCccccCCcccccccccccCCCcccccCcc
Q 038751 743 RTPSNWIGSLNKLKMLTLNSFVKCEIMP-PLGKLPSLEILRIWHMRSVKRVGDEFLGMEISDHIHIHGTSSSSSVIAFPK 821 (915)
Q Consensus 743 ~~~p~~~~~l~~L~~L~L~~~~~~~~l~-~l~~Lp~L~~L~L~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~f~~ 821 (915)
...|..+..+++|+.|+|++|... .+| .++.+++|++|+|++|. +..+|.. +..+++
T Consensus 214 ~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~-l~~lp~~--------------------~~~l~~ 271 (727)
T 4b8c_D 214 VMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNS-LTELPAE--------------------IKNLSN 271 (727)
T ss_dssp --------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSC-CSCCCGG--------------------GGGGTT
T ss_pred ecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCc-CcccChh--------------------hhCCCC
Confidence 334556667788888888877544 343 46677888888887775 4455543 346788
Q ss_pred cceeeecCcccccccccCCCCcccCcccceeecccCccccCCCcCCCCCCCcCeEeEcCCcc
Q 038751 822 LQKLELTGMDELEEWDFGNDDITIMPHIKSLYITYCEKLKSLPELLLRSTTLESLTIFGVPI 883 (915)
Q Consensus 822 L~~L~l~~~~~l~~~~~~~~~~~~lp~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~c~~ 883 (915)
|+.|+|+++. +..+ +..++.+++|+.|++++| .+..+|..+.++++|+.|+|++|+.
T Consensus 272 L~~L~Ls~N~-l~~l---p~~~~~l~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 272 LRVLDLSHNR-LTSL---PAELGSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp CCEEECTTSC-CSSC---CSSGGGGTTCSEEECCSS-CCCCCCSSTTSCTTCCCEECTTSCC
T ss_pred CCEEeCcCCc-CCcc---ChhhcCCCCCCEEECCCC-CCCccChhhhcCCCccEEeCCCCcc
Confidence 8888888864 5444 334668889999999888 6788888888889999999988864
No 147
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.47 E-value=1.5e-07 Score=101.89 Aligned_cols=125 Identities=17% Similarity=0.174 Sum_probs=83.2
Q ss_pred cCCCCCcceEEEeeeCCCCCCCccc-CccCccEEEEcCcCCCCCCCC--CCCCCCcceeeccccccceEeCccccCCccc
Q 038751 726 LRPPPDIKSLEIMVFKGRTPSNWIG-SLNKLKMLTLNSFVKCEIMPP--LGKLPSLEILRIWHMRSVKRVGDEFLGMEIS 802 (915)
Q Consensus 726 l~~~~~L~~L~l~~~~~~~~p~~~~-~l~~L~~L~L~~~~~~~~l~~--l~~Lp~L~~L~L~~~~~l~~~~~~~~~~~~l 802 (915)
-..+.++..+.+.+.........+. .+++|+.|+|++|. ...+|. +..+++|+.|.+.++ ++.++...+
T Consensus 198 ~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~-i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF----- 269 (329)
T 3sb4_A 198 GLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTN-ATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVF----- 269 (329)
T ss_dssp TCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBC-CCEECTTTTTTCTTCCEEECCTT--CCEECTTTT-----
T ss_pred ccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCC-cceecHhhhhCCCCCCEEECCcc--cceehHHHh-----
Confidence 3345667777777653211111111 37889999988764 444543 778889999998774 777776433
Q ss_pred ccccccccCCCcccccCcccc-eeeecCcccccccccCCCCcccCcccceeecccCccccCCCc-CCCCCCCcCeEe
Q 038751 803 DHIHIHGTSSSSSVIAFPKLQ-KLELTGMDELEEWDFGNDDITIMPHIKSLYITYCEKLKSLPE-LLLRSTTLESLT 877 (915)
Q Consensus 803 ~~l~l~~~~~~~~~~~f~~L~-~L~l~~~~~l~~~~~~~~~~~~lp~L~~L~l~~c~~L~~lp~-~l~~l~~L~~L~ 877 (915)
.++++|+ .|.+.+ +++.+. +..+..+++|+.|.+.++ .+..++. .+.++++|+.|.
T Consensus 270 --------------~~~~~L~~~l~l~~--~l~~I~--~~aF~~c~~L~~l~l~~n-~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 270 --------------SNCGRLAGTLELPA--SVTAIE--FGAFMGCDNLRYVLATGD-KITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp --------------TTCTTCCEEEEECT--TCCEEC--TTTTTTCTTEEEEEECSS-CCCEECTTTTCTTCCCCEEE
T ss_pred --------------hCChhccEEEEEcc--cceEEc--hhhhhCCccCCEEEeCCC-ccCccchhhhcCCcchhhhc
Confidence 3677788 888876 455443 334668889999998765 6788875 577788888875
No 148
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.45 E-value=3.5e-06 Score=91.31 Aligned_cols=179 Identities=14% Similarity=0.101 Sum_probs=106.3
Q ss_pred cCccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHH
Q 038751 170 VSDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAI 249 (915)
Q Consensus 170 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 249 (915)
-.+++|++..++.+..++..... .......|.|+|++|+|||++|+.+++. .... .+.++.+....
T Consensus 28 ~~~iiG~~~~~~~l~~~l~~~~~-~~~~~~~vll~G~~GtGKT~la~~ia~~--~~~~---~~~~~~~~~~~-------- 93 (338)
T 3pfi_A 28 FDGYIGQESIKKNLNVFIAAAKK-RNECLDHILFSGPAGLGKTTLANIISYE--MSAN---IKTTAAPMIEK-------- 93 (338)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHH-TTSCCCCEEEECSTTSSHHHHHHHHHHH--TTCC---EEEEEGGGCCS--------
T ss_pred HHHhCChHHHHHHHHHHHHHHHh-cCCCCCeEEEECcCCCCHHHHHHHHHHH--hCCC---eEEecchhccc--------
Confidence 35799999999999998865421 1223456899999999999999999873 2222 22333322111
Q ss_pred HHHhhCCCCCcccHHHHHHHHHHHhccCeEEEEEeCCCCCCccChhhhHHhhhcCC------------------CCceEE
Q 038751 250 IEGLEGSLPNLRELNSLLEYIHTSIKEKKFFLILDDVWPDDYSKWEPFHNCLMNGL------------------CGSRIL 311 (915)
Q Consensus 250 ~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~------------------~gs~ii 311 (915)
.......+.. ..+.-+|++|++..........+...+.... ++..+|
T Consensus 94 -------------~~~~~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i 158 (338)
T 3pfi_A 94 -------------SGDLAAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLI 158 (338)
T ss_dssp -------------HHHHHHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEE
T ss_pred -------------hhHHHHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEE
Confidence 1111111111 2356788999986544444455555554432 124566
Q ss_pred EEcCchH-HHhh-hcC-cCeEeCCCCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCCCchHHHHHH
Q 038751 312 VTTRKET-VARM-MES-TDVISIKELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKGLPLAAKTIG 381 (915)
Q Consensus 312 vTtR~~~-v~~~-~~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~PLai~~~~ 381 (915)
.+|.... +... ... ...+.+.+++.++...++.+.+..... ... .+..+.|++.+.|.|-.+..+.
T Consensus 159 ~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~-~~~---~~~~~~l~~~~~G~~r~l~~~l 227 (338)
T 3pfi_A 159 GATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNK-TCE---EKAALEIAKRSRSTPRIALRLL 227 (338)
T ss_dssp EEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC-EEC---HHHHHHHHHTTTTCHHHHHHHH
T ss_pred EeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCC-CCC---HHHHHHHHHHHCcCHHHHHHHH
Confidence 6665432 1111 112 368999999999999999877643221 111 2445678888999996655443
No 149
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.45 E-value=9.8e-07 Score=85.71 Aligned_cols=125 Identities=20% Similarity=0.175 Sum_probs=91.8
Q ss_pred cceEEEeeeCCCCCCCcccCccCccEEEEcCcCCCCCCCC--CCCCCCcceeeccccccceEeCccccCCcccccccccc
Q 038751 732 IKSLEIMVFKGRTPSNWIGSLNKLKMLTLNSFVKCEIMPP--LGKLPSLEILRIWHMRSVKRVGDEFLGMEISDHIHIHG 809 (915)
Q Consensus 732 L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~--l~~Lp~L~~L~L~~~~~l~~~~~~~~~~~~l~~l~l~~ 809 (915)
.+.+++.++....+|.. .+++|+.|++++|... .++. ++.+++|++|+++++. ++.++...
T Consensus 9 ~~~l~~~~~~l~~~p~~--~~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~------------- 71 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTG--IPSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQ-IQSLPDGV------------- 71 (177)
T ss_dssp TTEEECCSSCCSSCCTT--CCTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSC-CCCCCTTT-------------
T ss_pred CCEEEecCCCCccCCCC--CCCCCcEEEeCCCccc-EeCHHHhcCcccccEEECCCCc-ceEeChhH-------------
Confidence 46677777777777743 3579999999988644 4443 6889999999999875 55554432
Q ss_pred cCCCcccccCcccceeeecCcccccccccCCCCcccCcccceeecccCccccCCCcC-CCCCCCcCeEeEcCCcc
Q 038751 810 TSSSSSVIAFPKLQKLELTGMDELEEWDFGNDDITIMPHIKSLYITYCEKLKSLPEL-LLRSTTLESLTIFGVPI 883 (915)
Q Consensus 810 ~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~lp~L~~L~l~~c~~L~~lp~~-l~~l~~L~~L~l~~c~~ 883 (915)
+..+++|+.|++.++ .+..+. +..+..+++|+.|++++| .+..+|.. +..+++|++|++++++-
T Consensus 72 ------~~~l~~L~~L~l~~N-~l~~~~--~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 72 ------FDKLTKLTILYLHEN-KLQSLP--NGVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp ------TTTCTTCCEEECCSS-CCCCCC--TTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ------ccCCCccCEEECCCC-CccccC--HHHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCCe
Confidence 237888999999886 344443 222457899999999988 67888865 46799999999999863
No 150
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.43 E-value=1.1e-06 Score=90.06 Aligned_cols=174 Identities=15% Similarity=0.067 Sum_probs=99.2
Q ss_pred Cccccch---HHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHH
Q 038751 171 SDVRGRD---EEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAK 247 (915)
Q Consensus 171 ~~~~Gr~---~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 247 (915)
.+++|++ ..++.+..++... ..+.+.|+|++|+||||||+.+++. .......+.|++.+...+.
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~------~~~~~ll~G~~G~GKT~la~~l~~~--~~~~~~~~~~~~~~~~~~~----- 94 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGD------GVQAIYLWGPVKSGRTHLIHAACAR--ANELERRSFYIPLGIHASI----- 94 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTC------SCSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEGGGGGGS-----
T ss_pred hhccCCCCCHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEHHHHHHH-----
Confidence 4566632 4455555555321 3467889999999999999999874 3222334567766541110
Q ss_pred HHHHHhhCCCCCcccHHHHHHHHHHHhccCeEEEEEeCCCCCCccC--hhhhHHhhhcC-CCCc-eEEEEcCchH-----
Q 038751 248 AIIEGLEGSLPNLRELNSLLEYIHTSIKEKKFFLILDDVWPDDYSK--WEPFHNCLMNG-LCGS-RILVTTRKET----- 318 (915)
Q Consensus 248 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~--~~~l~~~l~~~-~~gs-~iivTtR~~~----- 318 (915)
+ .. .+ +.+ .++-+||+||++...... .+.+...+... ..+. ++|+||+...
T Consensus 95 -----~----~~---------~~-~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~ 154 (242)
T 3bos_A 95 -----S----TA---------LL-EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGF 154 (242)
T ss_dssp -----C----GG---------GG-TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTC
T ss_pred -----H----HH---------HH-Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHH
Confidence 0 00 00 011 346799999996533222 33344433321 1222 4777776322
Q ss_pred ----HHhhhcCcCeEeCCCCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCCCchHHHHHH
Q 038751 319 ----VARMMESTDVISIKELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKGLPLAAKTIG 381 (915)
Q Consensus 319 ----v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~PLai~~~~ 381 (915)
+...+.....+++.+++.++..+++...+........ .+..+.|++.++|.+-.+..+.
T Consensus 155 ~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~~l~~~~~g~~r~l~~~l 217 (242)
T 3bos_A 155 VLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLP----EDVGRFLLNRMARDLRTLFDVL 217 (242)
T ss_dssp CCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCC----HHHHHHHHHHTTTCHHHHHHHH
T ss_pred hhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHccCCHHHHHHHH
Confidence 1222222368999999999999999887642221111 2445678888999887765543
No 151
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.38 E-value=3e-06 Score=92.44 Aligned_cols=195 Identities=11% Similarity=0.073 Sum_probs=113.6
Q ss_pred cCccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCC-eEEEEEeCCCCCHHHHHHH
Q 038751 170 VSDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFD-KRIWVCVSDPFDEFRIAKA 248 (915)
Q Consensus 170 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~ 248 (915)
-.+++|+++.++.+..++... ....+.|+|++|+||||+|+.+.+.......+. ....++.+....... +++
T Consensus 36 ~~~i~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~ 108 (353)
T 1sxj_D 36 LDEVTAQDHAVTVLKKTLKSA------NLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISI-VRE 108 (353)
T ss_dssp TTTCCSCCTTHHHHHHHTTCT------TCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHH-HTT
T ss_pred HHHhhCCHHHHHHHHHHHhcC------CCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHH-HHH
Confidence 356899999999999998643 222388999999999999999987421111111 123333333222222 222
Q ss_pred HHHHhhCC-CCCcccHHHHHHHHHHHhccCeEEEEEeCCCCCCccChhhhHHhhhcCCCCceEEEEcCchH-HHhh-hcC
Q 038751 249 IIEGLEGS-LPNLRELNSLLEYIHTSIKEKKFFLILDDVWPDDYSKWEPFHNCLMNGLCGSRILVTTRKET-VARM-MES 325 (915)
Q Consensus 249 i~~~l~~~-~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~-v~~~-~~~ 325 (915)
.+..+... ....... .....-.+++-+|++|++..-.....+.+...+.......++|++|.... +... ...
T Consensus 109 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR 183 (353)
T 1sxj_D 109 KVKNFARLTVSKPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQ 183 (353)
T ss_dssp HHHHHHHSCCCCCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHH
T ss_pred HHHHHhhhcccccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhcc
Confidence 22222111 1000000 00011123456999999865444455667776766656677777775432 1111 112
Q ss_pred cCeEeCCCCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCCCchHHHHH
Q 038751 326 TDVISIKELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKGLPLAAKTI 380 (915)
Q Consensus 326 ~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~PLai~~~ 380 (915)
...+.+.+++.++....+...+....-... .+..+.|++.++|.|..+..+
T Consensus 184 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~----~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 184 CSKFRFKALDASNAIDRLRFISEQENVKCD----DGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHTTTCCCC----HHHHHHHHHHTSSCHHHHHHH
T ss_pred CceEEeCCCCHHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 348899999999999999887643322122 245677888999999875444
No 152
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.35 E-value=4.7e-06 Score=93.02 Aligned_cols=177 Identities=18% Similarity=0.167 Sum_probs=101.8
Q ss_pred CccccchHHH---HHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCC-CCHHHHH
Q 038751 171 SDVRGRDEEK---NILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDP-FDEFRIA 246 (915)
Q Consensus 171 ~~~~Gr~~~~---~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~ 246 (915)
.+++|.+..+ ..+...+... ....+.|+|++|+||||+|+.+.+. .... ++.++.. ..... .
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~------~~~~vLL~GppGtGKTtlAr~ia~~--~~~~-----f~~l~a~~~~~~~-i 91 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAG------HLHSMILWGPPGTGKTTLAEVIARY--ANAD-----VERISAVTSGVKE-I 91 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHT------CCCEEEEECSTTSSHHHHHHHHHHH--TTCE-----EEEEETTTCCHHH-H
T ss_pred HHhCCcHHHHhchHHHHHHHHcC------CCcEEEEECCCCCcHHHHHHHHHHH--hCCC-----eEEEEeccCCHHH-H
Confidence 4688988877 6677777433 4467899999999999999999883 2222 2222221 11111 1
Q ss_pred HHHHHHhhCCCCCcccHHHHHHHHH-HHhccCeEEEEEeCCCCCCccChhhhHHhhhcCCCCceEEE-EcCchH--H-Hh
Q 038751 247 KAIIEGLEGSLPNLRELNSLLEYIH-TSIKEKKFFLILDDVWPDDYSKWEPFHNCLMNGLCGSRILV-TTRKET--V-AR 321 (915)
Q Consensus 247 ~~i~~~l~~~~~~~~~~~~~~~~l~-~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiv-TtR~~~--v-~~ 321 (915)
+.+ ..... ....+++.+|++|+++.-.....+.+...+..+ ...+|. ||.+.. + ..
T Consensus 92 r~~-----------------~~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~--~v~lI~att~n~~~~l~~a 152 (447)
T 3pvs_A 92 REA-----------------IERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDG--TITFIGATTENPSFELNSA 152 (447)
T ss_dssp HHH-----------------HHHHHHHHHTTCCEEEEEETTTCC------CCHHHHHTT--SCEEEEEESSCGGGSSCHH
T ss_pred HHH-----------------HHHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcC--ceEEEecCCCCcccccCHH
Confidence 111 11111 112467889999999776556666677666652 223333 555442 1 12
Q ss_pred hhcCcCeEeCCCCCHHHHHHHHHHhHcCCCCC---CchhHHHHHHHHHHHhcCCCchHHHHH
Q 038751 322 MMESTDVISIKELSEQECWSLFKRFAFSGRSP---TECEQLEEIGRKIVGKCKGLPLAAKTI 380 (915)
Q Consensus 322 ~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~---~~~~~l~~~~~~i~~~c~G~PLai~~~ 380 (915)
......++.+.+++.++...++.+.+...... ....--.+..+.|++.++|.+..+..+
T Consensus 153 L~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~ 214 (447)
T 3pvs_A 153 LLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNT 214 (447)
T ss_dssp HHTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHH
T ss_pred HhCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHH
Confidence 22335588999999999999998876431100 001111344566778899988765444
No 153
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.35 E-value=1.2e-06 Score=88.58 Aligned_cols=127 Identities=12% Similarity=0.151 Sum_probs=97.7
Q ss_pred CCCcceEEEeeeCCCCCC--CcccCccCccEEEEcCcCCCCCCC-CCCCCCCcceeeccccccceEeCcc-ccCCccccc
Q 038751 729 PPDIKSLEIMVFKGRTPS--NWIGSLNKLKMLTLNSFVKCEIMP-PLGKLPSLEILRIWHMRSVKRVGDE-FLGMEISDH 804 (915)
Q Consensus 729 ~~~L~~L~l~~~~~~~~p--~~~~~l~~L~~L~L~~~~~~~~l~-~l~~Lp~L~~L~L~~~~~l~~~~~~-~~~~~~l~~ 804 (915)
++.++.|++++|....++ ..+..+++|++|+|++|......+ .++.+++|++|+|+++. ++.++.. +.....++.
T Consensus 31 ~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~ 109 (220)
T 2v70_A 31 PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR-LENVQHKMFKGLESLKT 109 (220)
T ss_dssp CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCGGGGTTCSSCCE
T ss_pred CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc-cCccCHhHhcCCcCCCE
Confidence 456789999999887763 457889999999999986444333 48899999999999987 6666554 567788999
Q ss_pred ccccccCCC----cccccCcccceeeecCcccccccccCCCCcccCcccceeecccCcc
Q 038751 805 IHIHGTSSS----SSVIAFPKLQKLELTGMDELEEWDFGNDDITIMPHIKSLYITYCEK 859 (915)
Q Consensus 805 l~l~~~~~~----~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~lp~L~~L~l~~c~~ 859 (915)
|++++|.+. ..+..+++|+.|++.++ .+..+. +..+..+++|+.|++.+++-
T Consensus 110 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~--~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 110 LMLRSNRITCVGNDSFIGLSSVRLLSLYDN-QITTVA--PGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp EECTTSCCCCBCTTSSTTCTTCSEEECTTS-CCCCBC--TTTTTTCTTCCEEECCSCCE
T ss_pred EECCCCcCCeECHhHcCCCccCCEEECCCC-cCCEEC--HHHhcCCCCCCEEEecCcCC
Confidence 999998654 34567899999999886 344442 23366899999999999864
No 154
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.29 E-value=4.8e-06 Score=93.16 Aligned_cols=161 Identities=14% Similarity=0.152 Sum_probs=96.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcccccccCCC--eEEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHhc
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFD--KRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLRELNSLLEYIHTSIK 275 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 275 (915)
...+.|+|++|+||||||+.+++. ....+. .+++++.. .+..++...+... .. ..+...+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~--l~~~~~~~~v~~v~~~------~~~~~~~~~~~~~-----~~----~~~~~~~~ 192 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYITSE------KFLNDLVDSMKEG-----KL----NEFREKYR 192 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHH--HHHHCCSSCEEEEEHH------HHHHHHHHHHHTT-----CH----HHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEeeHH------HHHHHHHHHHHcc-----cH----HHHHHHhc
Confidence 567899999999999999999983 333332 24455433 3444454444322 11 12333333
Q ss_pred cCeEEEEEeCCCCCCc--cChhhhHHhhhc-CCCCceEEEEcCch---------HHHhhhcCcCeEeCCCCCHHHHHHHH
Q 038751 276 EKKFFLILDDVWPDDY--SKWEPFHNCLMN-GLCGSRILVTTRKE---------TVARMMESTDVISIKELSEQECWSLF 343 (915)
Q Consensus 276 ~k~~LlVlDdvw~~~~--~~~~~l~~~l~~-~~~gs~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf 343 (915)
.++-+|++||++.... ...+.+...+.. ...|..||+||... .+...+.....+.+++++.++..+++
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL 272 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIA 272 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHH
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHH
Confidence 3677999999964322 223334444432 24567888888763 22233333468899999999999999
Q ss_pred HHhHcCCCCCCchhHHHHHHHHHHHhcCCCchHHHH
Q 038751 344 KRFAFSGRSPTECEQLEEIGRKIVGKCKGLPLAAKT 379 (915)
Q Consensus 344 ~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~PLai~~ 379 (915)
.+.+....-.... ++...|++.+.|.+-.+..
T Consensus 273 ~~~~~~~~~~i~~----e~l~~la~~~~gn~R~l~~ 304 (440)
T 2z4s_A 273 RKMLEIEHGELPE----EVLNFVAENVDDNLRRLRG 304 (440)
T ss_dssp HHHHHHHTCCCCT----THHHHHHHHCCSCHHHHHH
T ss_pred HHHHHHcCCCCCH----HHHHHHHHhcCCCHHHHHH
Confidence 8876421111111 2355678889998876543
No 155
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.29 E-value=2.1e-06 Score=84.64 Aligned_cols=108 Identities=13% Similarity=0.110 Sum_probs=81.7
Q ss_pred CCCcceEEEeeeCCCCCCCcccCccCccEEEEcCcCCCCCCC-CCCCCCCcceeeccccccceEeCccccCCcccccccc
Q 038751 729 PPDIKSLEIMVFKGRTPSNWIGSLNKLKMLTLNSFVKCEIMP-PLGKLPSLEILRIWHMRSVKRVGDEFLGMEISDHIHI 807 (915)
Q Consensus 729 ~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~-~l~~Lp~L~~L~L~~~~~l~~~~~~~~~~~~l~~l~l 807 (915)
+++|+.|++.+|....+|..+..+++|+.|+|++|......+ .++.+++|++|+|+++. ++.++...
T Consensus 30 ~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~-l~~i~~~~----------- 97 (193)
T 2wfh_A 30 PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR-LRCIPPRT----------- 97 (193)
T ss_dssp CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTT-----------
T ss_pred CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc-cCEeCHHH-----------
Confidence 468999999999999999889999999999999986444332 38899999999999987 66665432
Q ss_pred cccCCCcccccCcccceeeecCcccccccccCCCCcccCcccceeecccCcc
Q 038751 808 HGTSSSSSVIAFPKLQKLELTGMDELEEWDFGNDDITIMPHIKSLYITYCEK 859 (915)
Q Consensus 808 ~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~lp~L~~L~l~~c~~ 859 (915)
+..+++|+.|++.++ .+..++. ..+..+++|+.|++.+++-
T Consensus 98 --------f~~l~~L~~L~L~~N-~l~~~~~--~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 98 --------FDGLKSLRLLSLHGN-DISVVPE--GAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp --------TTTCTTCCEEECCSS-CCCBCCT--TTTTTCTTCCEEECCSSCE
T ss_pred --------hCCCCCCCEEECCCC-CCCeeCh--hhhhcCccccEEEeCCCCe
Confidence 236778888888875 3444432 2245788888888887653
No 156
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.26 E-value=1.1e-05 Score=88.48 Aligned_cols=199 Identities=12% Similarity=0.075 Sum_probs=105.7
Q ss_pred cCccccchHHHHHH---HHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEe----CCCCCH
Q 038751 170 VSDVRGRDEEKNIL---KRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCV----SDPFDE 242 (915)
Q Consensus 170 ~~~~~Gr~~~~~~l---~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v----s~~~~~ 242 (915)
..+++|++..++.+ .+.+... ....+.+.|+|++|+|||++|+.+.+.. ..... .+.+.. +.....
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~----~~~~~~vLl~GppGtGKT~la~~la~~l--~~~~~-~~~~~~~~~~~~~~~~ 115 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREG----KIAGRAVLIAGQPGTGKTAIAMGMAQAL--GPDTP-FTAIAGSEIFSLEMSK 115 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTT----CCTTCEEEEEESTTSSHHHHHHHHHHHH--CSSCC-EEEEEGGGGSCSSSCH
T ss_pred hhhccChHHHHHHHHHHHHHHHcC----CCCCCEEEEECCCCCCHHHHHHHHHHHh--cccCC-cccccchhhhhcccch
Confidence 35799999887664 4444332 1123578999999999999999998842 22111 122221 223344
Q ss_pred HHHHHHHHHHhhCC----------------------------CCC--cccHHHHHHHHHHHh-----ccC----eEEEEE
Q 038751 243 FRIAKAIIEGLEGS----------------------------LPN--LRELNSLLEYIHTSI-----KEK----KFFLIL 283 (915)
Q Consensus 243 ~~~~~~i~~~l~~~----------------------------~~~--~~~~~~~~~~l~~~l-----~~k----~~LlVl 283 (915)
.+.+.+......+. ..+ ......+...+.+.. .++ +.+|++
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~I 195 (368)
T 3uk6_A 116 TEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFI 195 (368)
T ss_dssp HHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEE
T ss_pred hHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEE
Confidence 44444443331110 000 000122222222221 133 359999
Q ss_pred eCCCCCCccChhhhHHhhhcCCCCceEEEEcCc------------h-HH-HhhhcCcCeEeCCCCCHHHHHHHHHHhHcC
Q 038751 284 DDVWPDDYSKWEPFHNCLMNGLCGSRILVTTRK------------E-TV-ARMMESTDVISIKELSEQECWSLFKRFAFS 349 (915)
Q Consensus 284 Ddvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~------------~-~v-~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~ 349 (915)
|++..-..+..+.+...+...... .++++|.. . .+ .........+.+.+++.++..+++..++..
T Consensus 196 DEi~~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~ 274 (368)
T 3uk6_A 196 DEVHMLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEE 274 (368)
T ss_dssp ESGGGSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHHHHH
T ss_pred hhccccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHHHHH
Confidence 999655445555566555544333 34444431 0 01 111122345899999999999999877643
Q ss_pred CCCCCchhHHHHHHHHHHHhcC-CCchHHHHH
Q 038751 350 GRSPTECEQLEEIGRKIVGKCK-GLPLAAKTI 380 (915)
Q Consensus 350 ~~~~~~~~~l~~~~~~i~~~c~-G~PLai~~~ 380 (915)
...... .+....|++.+. |.|..+..+
T Consensus 275 ~~~~~~----~~~l~~l~~~~~~G~~r~~~~l 302 (368)
T 3uk6_A 275 EDVEMS----EDAYTVLTRIGLETSLRYAIQL 302 (368)
T ss_dssp TTCCBC----HHHHHHHHHHHHHSCHHHHHHH
T ss_pred cCCCCC----HHHHHHHHHHhcCCCHHHHHHH
Confidence 222111 234566777787 777665444
No 157
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.25 E-value=2e-05 Score=82.95 Aligned_cols=187 Identities=15% Similarity=0.141 Sum_probs=102.5
Q ss_pred ccCccccchHHHHHHHHHHhccccc-------ccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCC
Q 038751 169 NVSDVRGRDEEKNILKRKLLCESNE-------ERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFD 241 (915)
Q Consensus 169 ~~~~~~Gr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 241 (915)
.-.+++|.+..++++.+.+...... +-...+-+.|+|++|+|||+||+.+++. .... .+.+..+.
T Consensus 15 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~--~~~~---~~~v~~~~--- 86 (285)
T 3h4m_A 15 RYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATE--TNAT---FIRVVGSE--- 86 (285)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHH--TTCE---EEEEEGGG---
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCC---EEEEehHH---
Confidence 3457999999999998887542100 0123456899999999999999999874 2222 22233221
Q ss_pred HHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHhccCeEEEEEeCCCCC-----------CccChhhhHHhhh-----cCC
Q 038751 242 EFRIAKAIIEGLEGSLPNLRELNSLLEYIHTSIKEKKFFLILDDVWPD-----------DYSKWEPFHNCLM-----NGL 305 (915)
Q Consensus 242 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~-----------~~~~~~~l~~~l~-----~~~ 305 (915)
+.....+ .....+...+......++.+|++||+..- +......+...+. ...
T Consensus 87 -----------~~~~~~~-~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~ 154 (285)
T 3h4m_A 87 -----------LVKKFIG-EGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDAR 154 (285)
T ss_dssp -----------GCCCSTT-HHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSS
T ss_pred -----------HHHhccc-hHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCC
Confidence 1111111 11112222233333456789999999431 1111122332222 123
Q ss_pred CCceEEEEcCchHHHh-h-h---cCcCeEeCCCCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCC-CchHHHH
Q 038751 306 CGSRILVTTRKETVAR-M-M---ESTDVISIKELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKG-LPLAAKT 379 (915)
Q Consensus 306 ~gs~iivTtR~~~v~~-~-~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G-~PLai~~ 379 (915)
.+..||.||....... . . .....+.+.+.+.++..+++...+..... ..... ...+++.+.| .|-.+..
T Consensus 155 ~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~~~----~~~l~~~~~g~~~~~i~~ 229 (285)
T 3h4m_A 155 GDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNL-AEDVN----LEEIAKMTEGCVGAELKA 229 (285)
T ss_dssp SSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCB-CTTCC----HHHHHHHCTTCCHHHHHH
T ss_pred CCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCC-CCcCC----HHHHHHHcCCCCHHHHHH
Confidence 4567777887542211 1 1 12347899999999999999887644321 11112 2446666776 4544444
Q ss_pred H
Q 038751 380 I 380 (915)
Q Consensus 380 ~ 380 (915)
+
T Consensus 230 l 230 (285)
T 3h4m_A 230 I 230 (285)
T ss_dssp H
T ss_pred H
Confidence 3
No 158
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.22 E-value=1.5e-05 Score=82.83 Aligned_cols=188 Identities=13% Similarity=0.078 Sum_probs=99.8
Q ss_pred cCccccchHHHHHHHHHHhccccc------ccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHH
Q 038751 170 VSDVRGRDEEKNILKRKLLCESNE------ERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEF 243 (915)
Q Consensus 170 ~~~~~Gr~~~~~~l~~~L~~~~~~------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 243 (915)
-.+++|.+..++.+.+++...... +....+.|.|+|++|+|||++|+.+++. .... .+.+..+.-.+
T Consensus 5 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~--~~~~---~~~~~~~~~~~-- 77 (262)
T 2qz4_A 5 FKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATE--AQVP---FLAMAGAEFVE-- 77 (262)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHH--HTCC---EEEEETTTTSS--
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHH--hCCC---EEEechHHHHh--
Confidence 356899988877776655321110 0123456889999999999999999883 2222 23444433111
Q ss_pred HHHHHHHHHhhCCCCCcccHHHHHHHHHHHhccCeEEEEEeCCCCC------------CccChh---hhHHhhhc--CCC
Q 038751 244 RIAKAIIEGLEGSLPNLRELNSLLEYIHTSIKEKKFFLILDDVWPD------------DYSKWE---PFHNCLMN--GLC 306 (915)
Q Consensus 244 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~------------~~~~~~---~l~~~l~~--~~~ 306 (915)
.. .......+...+.......+.+|++||+..- ...... .+...+.. ...
T Consensus 78 ------------~~-~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~ 144 (262)
T 2qz4_A 78 ------------VI-GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTD 144 (262)
T ss_dssp ------------SS-TTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTC
T ss_pred ------------hc-cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCC
Confidence 00 1111122223333333456789999999542 111122 22222222 123
Q ss_pred CceEEEEcCchHHH-hh-hc---CcCeEeCCCCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCCCch-HHHHH
Q 038751 307 GSRILVTTRKETVA-RM-ME---STDVISIKELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKGLPL-AAKTI 380 (915)
Q Consensus 307 gs~iivTtR~~~v~-~~-~~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~PL-ai~~~ 380 (915)
+..||.||...... .. .. ....+.+.+.+.++-.+++...+..... .... ......+++.+.|.+- .+..+
T Consensus 145 ~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~-~~~~--~~~~~~l~~~~~g~~~~~l~~l 221 (262)
T 2qz4_A 145 HVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKL-TQSS--TFYSQRLAELTPGFSGADIANI 221 (262)
T ss_dssp CEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTC-CBTH--HHHHHHHHHTCTTCCHHHHHHH
T ss_pred CEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCC-Ccch--hhHHHHHHHHCCCCCHHHHHHH
Confidence 45666677654321 11 11 1357889999999999999877543221 1111 1234678888888754 44444
No 159
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.22 E-value=3.7e-06 Score=91.81 Aligned_cols=196 Identities=12% Similarity=0.080 Sum_probs=106.4
Q ss_pred CccccchHHHHHHHHHH-hcccccccCceEEEEEEecCCCcHHHHHHHHhcccc--ccc--CCCe---------------
Q 038751 171 SDVRGRDEEKNILKRKL-LCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKD--VIE--NFDK--------------- 230 (915)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L-~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~--~~~--~F~~--------------- 230 (915)
.+++|.+...+.+.+++ ... .... +.|+|+.|+||||+|+.+++... ..+ .++.
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~-----~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~ 87 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPR-----DLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNV 87 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTT-----CCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CC
T ss_pred HHhcCCHHHHHHHHHHHhhCC-----CCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeee
Confidence 46899998888888877 322 1223 89999999999999988776210 000 0010
Q ss_pred -----EEEEEeCCC-CCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHhccCeEEEEEeCCCCCCccChhhhHHhhhcC
Q 038751 231 -----RIWVCVSDP-FDEFRIAKAIIEGLEGSLPNLRELNSLLEYIHTSIKEKKFFLILDDVWPDDYSKWEPFHNCLMNG 304 (915)
Q Consensus 231 -----~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~ 304 (915)
.+.+..+.. .......++++..+.....- .... .+.. +.+++-++|+|++..-+....+.+...+...
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~~-~ls~-l~~~~~vlilDE~~~L~~~~~~~L~~~le~~ 161 (354)
T 1sxj_E 88 VSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQV----DFQD-SKDG-LAHRYKCVIINEANSLTKDAQAALRRTMEKY 161 (354)
T ss_dssp EECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------------CCEEEEEECTTSSCHHHHHHHHHHHHHS
T ss_pred ecccceEEecHhhcCCcchHHHHHHHHHHHHhccc----cccc-cccc-cCCCCeEEEEeCccccCHHHHHHHHHHHHhh
Confidence 111111110 00000122222222111000 0000 0000 2346679999999765555556677777665
Q ss_pred CCCceEEEEcCchH-HHh-hhcCcCeEeCCCCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCCCchHHHHHH
Q 038751 305 LCGSRILVTTRKET-VAR-MMESTDVISIKELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKGLPLAAKTIG 381 (915)
Q Consensus 305 ~~gs~iivTtR~~~-v~~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~PLai~~~~ 381 (915)
..+..+|++|.... +.. .......+++.+++.++..+.+...+...+-.... .+....|++.++|.+..+..+.
T Consensus 162 ~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 162 SKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLET---KDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp TTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECC---SHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCCc---HHHHHHHHHHcCCCHHHHHHHH
Confidence 56778888776532 211 12234689999999999999998766322111110 1345678888999987665543
No 160
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.21 E-value=3.9e-07 Score=85.75 Aligned_cols=98 Identities=18% Similarity=0.161 Sum_probs=75.8
Q ss_pred cceEEEEEEccccc--cCccccCCCCceeEEEeccCCCCceeccccchhccccCCcceeeecCCCCCccccccccCCCcC
Q 038751 533 EKLRHLMLVLGFWA--KFPFSIFDAKTLHSLILVYSSNNQVAASPVLQGLFDQLTCLRALKIEDLPPTIKIPKGLENLIH 610 (915)
Q Consensus 533 ~~~r~Lsl~~~~~~--~~~~~~~~~~~Lr~L~l~~~~~~lrv~~~~lp~~i~~L~~Lr~L~l~~~~~~~~lP~~i~~L~~ 610 (915)
..+++|+++++.+. ..|..+..+++|++|.+.+| .+..+ ..++++++|++|++++|.....+|..++++++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n------~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 89 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV------GLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPN 89 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS------CCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTT
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC------CCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCC
Confidence 67899999998887 57777888999999999888 34455 77889999999999998887448887888999
Q ss_pred CCcccCcc-----cC--CcCCCCCCCCccCceee
Q 038751 611 LRYLKLSM-----VP--NGIERLTSLRTLSEFAV 637 (915)
Q Consensus 611 Lr~L~l~~-----lP--~~i~~L~~L~~L~~~~~ 637 (915)
|++|+++. +| ..++.+++|++|++..+
T Consensus 90 L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N 123 (149)
T 2je0_A 90 LTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123 (149)
T ss_dssp CCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTC
T ss_pred CCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCC
Confidence 99998543 33 45666677777665433
No 161
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.21 E-value=7.4e-08 Score=104.68 Aligned_cols=142 Identities=19% Similarity=0.148 Sum_probs=89.7
Q ss_pred hcCCCCCcceEEEeeeCCCCCCCcccCccCccEEEEcCcCCCC-CCCCC--CCCCCcceeeccccccceEeCc-cccCCc
Q 038751 725 ALRPPPDIKSLEIMVFKGRTPSNWIGSLNKLKMLTLNSFVKCE-IMPPL--GKLPSLEILRIWHMRSVKRVGD-EFLGME 800 (915)
Q Consensus 725 ~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~-~l~~l--~~Lp~L~~L~L~~~~~l~~~~~-~~~~~~ 800 (915)
.+.++|+|+.|.+.|+.+..+|. + .+++|++|+|..|.... .+..+ ..+|+|++|+|+.+... ..+. .+....
T Consensus 167 ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~-~~~~~~~~~l~ 243 (362)
T 2ra8_A 167 VLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVED-YGFDGDMNVFR 243 (362)
T ss_dssp HHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGG-GTCCSCGGGTG
T ss_pred HHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccc-cccchhHHHHH
Confidence 34567899999999986555665 3 38999999998774211 12222 37999999998643211 0000 000000
Q ss_pred ccccccccccCCCcccccCcccceeeecCcccccccc--cCCCCcccCcccceeecccCccccC-----CCcCCCCCCCc
Q 038751 801 ISDHIHIHGTSSSSSVIAFPKLQKLELTGMDELEEWD--FGNDDITIMPHIKSLYITYCEKLKS-----LPELLLRSTTL 873 (915)
Q Consensus 801 ~l~~l~l~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~--~~~~~~~~lp~L~~L~l~~c~~L~~-----lp~~l~~l~~L 873 (915)
. ......||+|+.|.+.+|.--.... +.. ...+|+|+.|+++.| .++. ++.++.++++|
T Consensus 244 ~-----------~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~--a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L 309 (362)
T 2ra8_A 244 P-----------LFSKDRFPNLKWLGIVDAEEQNVVVEMFLE--SDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHL 309 (362)
T ss_dssp G-----------GSCTTTCTTCCEEEEESCTTHHHHHHHHHH--CSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTC
T ss_pred H-----------HHhcCCCCCcCEEeCCCCCCchHHHHHHHh--CccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcc
Confidence 0 0011369999999998864221111 000 126899999999876 5554 56666778999
Q ss_pred CeEeEcCCcc
Q 038751 874 ESLTIFGVPI 883 (915)
Q Consensus 874 ~~L~l~~c~~ 883 (915)
+.|++++|..
T Consensus 310 ~~L~L~~n~i 319 (362)
T 2ra8_A 310 KFINMKYNYL 319 (362)
T ss_dssp SEEECCSBBC
T ss_pred eEEECCCCcC
Confidence 9999999864
No 162
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.20 E-value=1.9e-06 Score=83.56 Aligned_cols=108 Identities=15% Similarity=0.226 Sum_probs=84.6
Q ss_pred ccCccCccEEEEcCcCCCCCCCCCCCCC-CcceeeccccccceEeCccccCCcccccccccccCCCcccccCcccceeee
Q 038751 749 IGSLNKLKMLTLNSFVKCEIMPPLGKLP-SLEILRIWHMRSVKRVGDEFLGMEISDHIHIHGTSSSSSVIAFPKLQKLEL 827 (915)
Q Consensus 749 ~~~l~~L~~L~L~~~~~~~~l~~l~~Lp-~L~~L~L~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~f~~L~~L~l 827 (915)
+..+++|+.|++++|. ...+|.+..+. +|++|++++|. ++.++ . +..+++|+.|++
T Consensus 15 ~~~~~~L~~L~l~~n~-l~~i~~~~~~~~~L~~L~Ls~N~-l~~~~-~--------------------l~~l~~L~~L~L 71 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYK-IPVIENLGATLDQFDAIDFSDNE-IRKLD-G--------------------FPLLRRLKTLLV 71 (176)
T ss_dssp EECTTSCEEEECTTSC-CCSCCCGGGGTTCCSEEECCSSC-CCEEC-C--------------------CCCCSSCCEEEC
T ss_pred cCCcCCceEEEeeCCC-CchhHHhhhcCCCCCEEECCCCC-CCccc-c--------------------cccCCCCCEEEC
Confidence 4468899999999984 44667777765 99999999986 55552 1 357899999999
Q ss_pred cCcccccccccCCCCcccCcccceeecccCccccCCCc--CCCCCCCcCeEeEcCCcc
Q 038751 828 TGMDELEEWDFGNDDITIMPHIKSLYITYCEKLKSLPE--LLLRSTTLESLTIFGVPI 883 (915)
Q Consensus 828 ~~~~~l~~~~~~~~~~~~lp~L~~L~l~~c~~L~~lp~--~l~~l~~L~~L~l~~c~~ 883 (915)
+++. +..++ +..+..+|+|+.|++++| .+..+|. .+.++++|+.|++++|+.
T Consensus 72 s~N~-l~~~~--~~~~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~i 125 (176)
T 1a9n_A 72 NNNR-ICRIG--EGLDQALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNPV 125 (176)
T ss_dssp CSSC-CCEEC--SCHHHHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSGG
T ss_pred CCCc-ccccC--cchhhcCCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCCC
Confidence 9873 55443 221358999999999998 6788887 788899999999999975
No 163
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.18 E-value=7.2e-06 Score=88.44 Aligned_cols=99 Identities=16% Similarity=0.131 Sum_probs=72.7
Q ss_pred CCCcceEEEeeeCCCCCCC-cccCccCccEEEEcCcCCCCCCCC--CCCCCCcc-eeeccccccceEeCccccCCccccc
Q 038751 729 PPDIKSLEIMVFKGRTPSN-WIGSLNKLKMLTLNSFVKCEIMPP--LGKLPSLE-ILRIWHMRSVKRVGDEFLGMEISDH 804 (915)
Q Consensus 729 ~~~L~~L~l~~~~~~~~p~-~~~~l~~L~~L~L~~~~~~~~l~~--l~~Lp~L~-~L~L~~~~~l~~~~~~~~~~~~l~~ 804 (915)
+++|+.|++.++....+|. .+..+++|+.|+|.++ +..++. +..+++|+ .|.+.+ .++.++...+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF------- 293 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAF------- 293 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTT-------
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEchhhh-------
Confidence 6899999999988777765 4668999999999886 555554 78899999 999987 5788875433
Q ss_pred ccccccCCCcccccCcccceeeecCcccccccccCCCCcccCcccceee
Q 038751 805 IHIHGTSSSSSVIAFPKLQKLELTGMDELEEWDFGNDDITIMPHIKSLY 853 (915)
Q Consensus 805 l~l~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~lp~L~~L~ 853 (915)
.++++|+.|.+.+. ++..+. ...+..+++|+.|+
T Consensus 294 ------------~~c~~L~~l~l~~n-~i~~I~--~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 294 ------------MGCDNLRYVLATGD-KITTLG--DELFGNGVPSKLIY 327 (329)
T ss_dssp ------------TTCTTEEEEEECSS-CCCEEC--TTTTCTTCCCCEEE
T ss_pred ------------hCCccCCEEEeCCC-ccCccc--hhhhcCCcchhhhc
Confidence 36788999988543 344443 22355677777775
No 164
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.17 E-value=1.5e-05 Score=85.03 Aligned_cols=161 Identities=14% Similarity=0.119 Sum_probs=91.4
Q ss_pred ccccchHHHHHHHHHHhcccc---------cccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCH
Q 038751 172 DVRGRDEEKNILKRKLLCESN---------EERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDE 242 (915)
Q Consensus 172 ~~~Gr~~~~~~l~~~L~~~~~---------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 242 (915)
+++|.+..++.+.+.+..... ........+.|+|++|+|||++|+.+++...........-++.++..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~--- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD--- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG---
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH---
Confidence 478988888888776542110 00223456899999999999999988774322222211123333310
Q ss_pred HHHHHHHHHHhhCCCCCcccHHHHHHHHHHHhccCeEEEEEeCCCCC---------CccChhhhHHhhhcCCCCceEEEE
Q 038751 243 FRIAKAIIEGLEGSLPNLRELNSLLEYIHTSIKEKKFFLILDDVWPD---------DYSKWEPFHNCLMNGLCGSRILVT 313 (915)
Q Consensus 243 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~---------~~~~~~~l~~~l~~~~~gs~iivT 313 (915)
.+.....+ .....+...+... +.-+|++|++..- .......+...+.....+..||+|
T Consensus 109 ---------~l~~~~~g-~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~ 175 (309)
T 3syl_A 109 ---------DLVGQYIG-HTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILA 175 (309)
T ss_dssp ---------GTCCSSTT-CHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEE
T ss_pred ---------Hhhhhccc-ccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEe
Confidence 11111111 1111222222222 3459999999532 223345566666666667788888
Q ss_pred cCchHHHhh-------hc-CcCeEeCCCCCHHHHHHHHHHhHc
Q 038751 314 TRKETVARM-------ME-STDVISIKELSEQECWSLFKRFAF 348 (915)
Q Consensus 314 tR~~~v~~~-------~~-~~~~~~l~~L~~~~~~~lf~~~~~ 348 (915)
|........ .. ....+.+++++.++...++...+.
T Consensus 176 ~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 176 GYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp ECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHH
Confidence 865432111 11 136899999999999999987764
No 165
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.16 E-value=6.1e-08 Score=96.34 Aligned_cols=38 Identities=24% Similarity=0.276 Sum_probs=18.4
Q ss_pred cccCccCccEEEEcCcCCCCCCCCCCCCCCcceeecccc
Q 038751 748 WIGSLNKLKMLTLNSFVKCEIMPPLGKLPSLEILRIWHM 786 (915)
Q Consensus 748 ~~~~l~~L~~L~L~~~~~~~~l~~l~~Lp~L~~L~L~~~ 786 (915)
.+..+++|++|+|++|. +..+|.++.+++|++|++++|
T Consensus 43 ~~~~l~~L~~L~ls~n~-l~~l~~~~~l~~L~~L~l~~n 80 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNN-IEKISSLSGMENLRILSLGRN 80 (198)
T ss_dssp HHHHTTTCSEEECSEEE-ESCCCCHHHHTTCCEEEEEEE
T ss_pred HHhcCCCCCEEECCCCC-CccccccccCCCCCEEECCCC
Confidence 44445555555555442 222444445555555555544
No 166
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.16 E-value=2.2e-05 Score=84.58 Aligned_cols=170 Identities=11% Similarity=0.025 Sum_probs=102.8
Q ss_pred hHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccc--------------------cCCCeEEEEEe
Q 038751 177 DEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVI--------------------ENFDKRIWVCV 236 (915)
Q Consensus 177 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--------------------~~F~~~~wv~v 236 (915)
++..+.+...+... .-.+.+.++|+.|+|||++|+.+.+...-. .|++. .++..
T Consensus 8 ~~~~~~l~~~i~~~-----~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~-~~~~~ 81 (334)
T 1a5t_A 8 RPDFEKLVASYQAG-----RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDY-YTLAP 81 (334)
T ss_dssp HHHHHHHHHHHHTT-----CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTE-EEECC
T ss_pred HHHHHHHHHHHHcC-----CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCE-EEEec
Confidence 44556666666432 234678999999999999998887632111 11221 22221
Q ss_pred CCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHh-----ccCeEEEEEeCCCCCCccChhhhHHhhhcCCCCceEE
Q 038751 237 SDPFDEFRIAKAIIEGLEGSLPNLRELNSLLEYIHTSI-----KEKKFFLILDDVWPDDYSKWEPFHNCLMNGLCGSRIL 311 (915)
Q Consensus 237 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~ii 311 (915)
.. .......+++.+. .+.+ .+++-++|+|++..-..+..+.+...+.....++.+|
T Consensus 82 ~~------------------~~~~~~i~~ir~l-~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~I 142 (334)
T 1a5t_A 82 EK------------------GKNTLGVDAVREV-TEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFF 142 (334)
T ss_dssp CT------------------TCSSBCHHHHHHH-HHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEE
T ss_pred cc------------------cCCCCCHHHHHHH-HHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEE
Confidence 10 0011122222222 2222 2567799999996555455667777777666677877
Q ss_pred EEcCchH-HHh-hhcCcCeEeCCCCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCCCchHHHHH
Q 038751 312 VTTRKET-VAR-MMESTDVISIKELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKGLPLAAKTI 380 (915)
Q Consensus 312 vTtR~~~-v~~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~PLai~~~ 380 (915)
++|.+.. +.. .......+++.++++++..+.+.... ... .+.+..+++.++|.|..+..+
T Consensus 143 l~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~-----~~~----~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 143 LATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV-----TMS----QDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp EEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC-----CCC----HHHHHHHHHHTTTCHHHHHHT
T ss_pred EEeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc-----CCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 7777643 221 22335689999999999999998875 111 133466888999999876554
No 167
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.15 E-value=1.2e-05 Score=92.12 Aligned_cols=197 Identities=14% Similarity=0.132 Sum_probs=108.8
Q ss_pred cCccccchHHHHHHHHHHhccccc-----------ccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCC
Q 038751 170 VSDVRGRDEEKNILKRKLLCESNE-----------ERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSD 238 (915)
Q Consensus 170 ~~~~~Gr~~~~~~l~~~L~~~~~~-----------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 238 (915)
-.+++|++..++++.+++...... +.+..+.+.|+|++|+||||+|+.+++.. .+ ..+.++.+.
T Consensus 38 ~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l----~~-~~i~in~s~ 112 (516)
T 1sxj_A 38 LQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL----GY-DILEQNASD 112 (516)
T ss_dssp GGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT----TC-EEEEECTTS
T ss_pred HHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc----CC-CEEEEeCCC
Confidence 356999999999999999752110 01234789999999999999999998842 12 233444444
Q ss_pred CCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHH--HhccCeEEEEEeCCCCCCcc---ChhhhHHhhhcCCCCceEEEE
Q 038751 239 PFDEFRIAKAIIEGLEGSLPNLRELNSLLEYIHT--SIKEKKFFLILDDVWPDDYS---KWEPFHNCLMNGLCGSRILVT 313 (915)
Q Consensus 239 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~--~l~~k~~LlVlDdvw~~~~~---~~~~l~~~l~~~~~gs~iivT 313 (915)
..... +....+....... ........... ...+++.+|++|++..-... .+..+...+... +..||++
T Consensus 113 ~~~~~-~~~~~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIli 185 (516)
T 1sxj_A 113 VRSKT-LLNAGVKNALDNM----SVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPLILI 185 (516)
T ss_dssp CCCHH-HHHHTGGGGTTBC----CSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEEE
T ss_pred cchHH-HHHHHHHHHhccc----cHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhc--CCCEEEE
Confidence 33332 3222222221110 00000000000 11356789999999543222 224454444432 3345555
Q ss_pred cCchH---HHhhhcCcCeEeCCCCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCCCc-hHHHHHHh
Q 038751 314 TRKET---VARMMESTDVISIKELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKGLP-LAAKTIGS 382 (915)
Q Consensus 314 tR~~~---v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~P-Lai~~~~~ 382 (915)
+.... +.........+.+.+++.++..+++...+....-...+ +....|++.++|.+ -++..+..
T Consensus 186 ~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~----~~l~~la~~s~GdiR~~i~~L~~ 254 (516)
T 1sxj_A 186 CNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDP----NVIDRLIQTTRGDIRQVINLLST 254 (516)
T ss_dssp ESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCT----THHHHHHHHTTTCHHHHHHHHTH
T ss_pred EcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHcCCcHHHHHHHHHH
Confidence 54322 22222234579999999999999987765432211222 23556788899844 45555543
No 168
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.15 E-value=1.6e-05 Score=85.46 Aligned_cols=179 Identities=12% Similarity=0.095 Sum_probs=102.7
Q ss_pred cCccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHH
Q 038751 170 VSDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAI 249 (915)
Q Consensus 170 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 249 (915)
-.+++|.+..++.+.+++.... ...++.+.|++|+|||++|+.+++.. . ...+.++.+. .. ....+.+
T Consensus 25 ~~~ivg~~~~~~~l~~~l~~~~-----~~~~~L~~G~~G~GKT~la~~la~~l--~---~~~~~i~~~~-~~-~~~i~~~ 92 (324)
T 3u61_B 25 IDECILPAFDKETFKSITSKGK-----IPHIILHSPSPGTGKTTVAKALCHDV--N---ADMMFVNGSD-CK-IDFVRGP 92 (324)
T ss_dssp TTTSCCCHHHHHHHHHHHHTTC-----CCSEEEECSSTTSSHHHHHHHHHHHT--T---EEEEEEETTT-CC-HHHHHTH
T ss_pred HHHHhCcHHHHHHHHHHHHcCC-----CCeEEEeeCcCCCCHHHHHHHHHHHh--C---CCEEEEcccc-cC-HHHHHHH
Confidence 3579999999999999986432 34678888999999999999998742 1 1234444433 11 1222222
Q ss_pred HHHhhCCCCCcccHHHHHHHHHHHhccCeEEEEEeCCCCCC-ccChhhhHHhhhcCCCCceEEEEcCchH-HHhh-hcCc
Q 038751 250 IEGLEGSLPNLRELNSLLEYIHTSIKEKKFFLILDDVWPDD-YSKWEPFHNCLMNGLCGSRILVTTRKET-VARM-MEST 326 (915)
Q Consensus 250 ~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~-~~~~~~l~~~l~~~~~gs~iivTtR~~~-v~~~-~~~~ 326 (915)
+....... ...+++-++++||+..-. .+..+.+...+.....+.++|+||.... +... ....
T Consensus 93 ~~~~~~~~---------------~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~ 157 (324)
T 3u61_B 93 LTNFASAA---------------SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRC 157 (324)
T ss_dssp HHHHHHBC---------------CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHS
T ss_pred HHHHHhhc---------------ccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhC
Confidence 21111000 012367899999996543 3445556665554445678888887543 1111 1113
Q ss_pred CeEeCCCCCHHHHHHHH-------HHhHcCCCCCCchhHHHHHHHHHHHhcCCCchHHH
Q 038751 327 DVISIKELSEQECWSLF-------KRFAFSGRSPTECEQLEEIGRKIVGKCKGLPLAAK 378 (915)
Q Consensus 327 ~~~~l~~L~~~~~~~lf-------~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~PLai~ 378 (915)
..+++++++.++-.+++ ...+....-.... .+....|++.++|.+..+.
T Consensus 158 ~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~---~~~~~~l~~~~~gd~R~a~ 213 (324)
T 3u61_B 158 RVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIAD---MKVVAALVKKNFPDFRKTI 213 (324)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSC---HHHHHHHHHHTCSCTTHHH
T ss_pred cEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCc---HHHHHHHHHhCCCCHHHHH
Confidence 57999999988843332 2222111111111 1455668888888776543
No 169
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.14 E-value=7.4e-06 Score=80.61 Aligned_cols=107 Identities=15% Similarity=0.152 Sum_probs=77.3
Q ss_pred CCcceEEEeeeCCCCCCC--cccCccCccEEEEcCcCCCCCCC-CCCCCCCcceeeccccccceEeCccccCCccccccc
Q 038751 730 PDIKSLEIMVFKGRTPSN--WIGSLNKLKMLTLNSFVKCEIMP-PLGKLPSLEILRIWHMRSVKRVGDEFLGMEISDHIH 806 (915)
Q Consensus 730 ~~L~~L~l~~~~~~~~p~--~~~~l~~L~~L~L~~~~~~~~l~-~l~~Lp~L~~L~L~~~~~l~~~~~~~~~~~~l~~l~ 806 (915)
++|+.|++.+|....+|. .+..+++|++|+|++|......| .++.+++|++|+|+++. ++.++...
T Consensus 29 ~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~---------- 97 (192)
T 1w8a_A 29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK-IKEISNKM---------- 97 (192)
T ss_dssp TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC-CCEECSSS----------
T ss_pred CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc-CCccCHHH----------
Confidence 489999999999887764 48899999999999997555444 48899999999999987 66665432
Q ss_pred ccccCCCcccccCcccceeeecCcccccccccCCCCcccCcccceeecccCcc
Q 038751 807 IHGTSSSSSVIAFPKLQKLELTGMDELEEWDFGNDDITIMPHIKSLYITYCEK 859 (915)
Q Consensus 807 l~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~lp~L~~L~l~~c~~ 859 (915)
+..+++|+.|++.++. +.... +..+..+++|+.|++.+++-
T Consensus 98 ---------~~~l~~L~~L~L~~N~-l~~~~--~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 98 ---------FLGLHQLKTLNLYDNQ-ISCVM--PGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp ---------STTCTTCCEEECCSSC-CCEEC--TTSSTTCTTCCEEECTTCCB
T ss_pred ---------hcCCCCCCEEECCCCc-CCeeC--HHHhhcCCCCCEEEeCCCCc
Confidence 2356777777777652 33321 22345677777777777643
No 170
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.12 E-value=4.9e-05 Score=79.33 Aligned_cols=174 Identities=16% Similarity=0.174 Sum_probs=90.6
Q ss_pred CccccchHHHHHHHHH---Hh-cccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHH
Q 038751 171 SDVRGRDEEKNILKRK---LL-CESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIA 246 (915)
Q Consensus 171 ~~~~Gr~~~~~~l~~~---L~-~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~ 246 (915)
..++|.....++++.. +. .-........+.+.|+|++|+|||++|+.+++. .. +.. +.+..+..
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~--~~--~~~-~~i~~~~~------- 100 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEE--SN--FPF-IKICSPDK------- 100 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHH--HT--CSE-EEEECGGG-------
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHH--hC--CCE-EEEeCHHH-------
Confidence 3577887776666663 11 110001335678999999999999999999884 22 222 22222210
Q ss_pred HHHHHHhhCCCCCcccHHHHHHHHHHHhccCeEEEEEeCCCCC------CccChhh----hHHhhhc---CCCCceEEEE
Q 038751 247 KAIIEGLEGSLPNLRELNSLLEYIHTSIKEKKFFLILDDVWPD------DYSKWEP----FHNCLMN---GLCGSRILVT 313 (915)
Q Consensus 247 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~------~~~~~~~----l~~~l~~---~~~gs~iivT 313 (915)
+.+. ........+...+......+..+|++||+..- ....-.. +...+.. ......||.|
T Consensus 101 ------~~g~-~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~t 173 (272)
T 1d2n_A 101 ------MIGF-SETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGT 173 (272)
T ss_dssp ------CTTC-CHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEE
T ss_pred ------hcCC-chHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEe
Confidence 1110 00011122233333344467889999998421 1111122 2222221 1223346667
Q ss_pred cCchHHHhh---hcC-cCeEeCCCCCH-HHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCC
Q 038751 314 TRKETVARM---MES-TDVISIKELSE-QECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKG 372 (915)
Q Consensus 314 tR~~~v~~~---~~~-~~~~~l~~L~~-~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G 372 (915)
|........ ... ...+.+.+++. ++...++.+.. . .. .+....|++.+.|
T Consensus 174 tn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~--~---~~----~~~~~~l~~~~~g 228 (272)
T 1d2n_A 174 TSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG--N---FK----DKERTTIAQQVKG 228 (272)
T ss_dssp ESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT--C---SC----HHHHHHHHHHHTT
T ss_pred cCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC--C---CC----HHHHHHHHHHhcC
Confidence 776644332 122 45788999988 77777766532 1 11 2335567777777
No 171
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.09 E-value=8.5e-06 Score=78.98 Aligned_cols=108 Identities=17% Similarity=0.221 Sum_probs=81.4
Q ss_pred CCCcceEEEeeeCCCCCCC-cccCccCccEEEEcCcCCCCCCCC--CCCCCCcceeeccccccceEeCccccCCcccccc
Q 038751 729 PPDIKSLEIMVFKGRTPSN-WIGSLNKLKMLTLNSFVKCEIMPP--LGKLPSLEILRIWHMRSVKRVGDEFLGMEISDHI 805 (915)
Q Consensus 729 ~~~L~~L~l~~~~~~~~p~-~~~~l~~L~~L~L~~~~~~~~l~~--l~~Lp~L~~L~L~~~~~l~~~~~~~~~~~~l~~l 805 (915)
+++|+.|++.++....+|. .+..+++|++|++++|.. ..++. ++.+++|++|+++++. ++.++...
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~--------- 95 (177)
T 2o6r_A 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQI-QSLPDGVFDKLTKLTILYLHENK-LQSLPNGV--------- 95 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSC-CCCCCTTT---------
T ss_pred CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcc-eEeChhHccCCCccCEEECCCCC-ccccCHHH---------
Confidence 4789999999998877764 467899999999999854 44444 6899999999999886 55554432
Q ss_pred cccccCCCcccccCcccceeeecCcccccccccCCCCcccCcccceeecccCccc
Q 038751 806 HIHGTSSSSSVIAFPKLQKLELTGMDELEEWDFGNDDITIMPHIKSLYITYCEKL 860 (915)
Q Consensus 806 ~l~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~lp~L~~L~l~~c~~L 860 (915)
+..+++|+.|++.++ .+..++. ..+..+++|+.|++.+|+-.
T Consensus 96 ----------~~~l~~L~~L~l~~N-~l~~~~~--~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 96 ----------FDKLTQLKELALDTN-QLKSVPD--GIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp ----------TTTCTTCCEEECCSS-CCSCCCT--TTTTTCTTCCEEECCSSCBC
T ss_pred ----------hhCCcccCEEECcCC-cceEeCH--HHhcCCcccCEEEecCCCee
Confidence 236889999999886 4554432 22457899999999988643
No 172
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.07 E-value=1e-05 Score=78.16 Aligned_cols=58 Identities=14% Similarity=0.079 Sum_probs=34.8
Q ss_pred ceEEEeeeCCCCCCCcccCccCccEEEEcCcCCCCCCC-CCCCCCCcceeeccccccceEeC
Q 038751 733 KSLEIMVFKGRTPSNWIGSLNKLKMLTLNSFVKCEIMP-PLGKLPSLEILRIWHMRSVKRVG 793 (915)
Q Consensus 733 ~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~-~l~~Lp~L~~L~L~~~~~l~~~~ 793 (915)
+.++++++....+|..+ .++|++|+|++|......| .++.+++|++|+|+++. ++.++
T Consensus 15 ~~l~~~~n~l~~iP~~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~ 73 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK-LTAIP 73 (174)
T ss_dssp SEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCC
T ss_pred cEEEeCCCCCCccCCCc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCC-CCccC
Confidence 56666666666666544 3677777777765333323 25667777777776654 44443
No 173
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.07 E-value=1.1e-05 Score=78.86 Aligned_cols=45 Identities=27% Similarity=0.215 Sum_probs=37.9
Q ss_pred CccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcc
Q 038751 171 SDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
..++||+.+++.+.+.+... ..+.+.|+|++|+||||+|+.+++.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~------~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRR------TKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------SSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCC------CCCceEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999998653 3355789999999999999998874
No 174
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.07 E-value=3.6e-08 Score=98.04 Aligned_cols=127 Identities=16% Similarity=0.182 Sum_probs=93.1
Q ss_pred hcCCCCCcceEEEeeeCCCCCCCcccCccCccEEEEcCcCCCCCCCC-CCCCCCcceeeccccccceEeCccccCCcccc
Q 038751 725 ALRPPPDIKSLEIMVFKGRTPSNWIGSLNKLKMLTLNSFVKCEIMPP-LGKLPSLEILRIWHMRSVKRVGDEFLGMEISD 803 (915)
Q Consensus 725 ~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~Lp~L~~L~L~~~~~l~~~~~~~~~~~~l~ 803 (915)
.+..+++|+.|++++|....+| .+..+++|++|++++|... .+|. ++.+++|++|++++|. +..++.
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~-l~~l~~--------- 110 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQ-IASLSG--------- 110 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEE-CCCHHH---------
T ss_pred HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCc-CCcCCc---------
Confidence 3455789999999999988888 7889999999999998543 5655 4567999999999875 444431
Q ss_pred cccccccCCCcccccCcccceeeecCcccccccccCCCCcccCcccceeecccCccccCCCcC----------CCCCCCc
Q 038751 804 HIHIHGTSSSSSVIAFPKLQKLELTGMDELEEWDFGNDDITIMPHIKSLYITYCEKLKSLPEL----------LLRSTTL 873 (915)
Q Consensus 804 ~l~l~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~lp~L~~L~l~~c~~L~~lp~~----------l~~l~~L 873 (915)
+..+++|+.|++.++. +..++.. ..+..+++|+.|++.+|+--..+|.. +..+++|
T Consensus 111 ------------~~~l~~L~~L~l~~N~-i~~~~~~-~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L 176 (198)
T 1ds9_A 111 ------------IEKLVNLRVLYMSNNK-ITNWGEI-DKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNL 176 (198)
T ss_dssp ------------HHHHHHSSEEEESEEE-CCCHHHH-HHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSC
T ss_pred ------------cccCCCCCEEECCCCc-CCchhHH-HHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCc
Confidence 3478889999998863 4443320 12457899999999998644444432 6678889
Q ss_pred CeEe
Q 038751 874 ESLT 877 (915)
Q Consensus 874 ~~L~ 877 (915)
+.|+
T Consensus 177 ~~Ld 180 (198)
T 1ds9_A 177 KKLD 180 (198)
T ss_dssp SEEC
T ss_pred EEEC
Confidence 9887
No 175
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.03 E-value=3.9e-05 Score=82.43 Aligned_cols=155 Identities=18% Similarity=0.186 Sum_probs=87.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHhccC
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLRELNSLLEYIHTSIKEK 277 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 277 (915)
...+.|+|++|+||||||+.+++..... .+ ..++++.. .+...+...+... ..+. +...+ .+
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~-~~-~~~~i~~~------~~~~~~~~~~~~~-----~~~~----~~~~~-~~ 98 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKR-GY-RVIYSSAD------DFAQAMVEHLKKG-----TINE----FRNMY-KS 98 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHT-TC-CEEEEEHH------HHHHHHHHHHHHT-----CHHH----HHHHH-HT
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHC-CC-EEEEEEHH------HHHHHHHHHHHcC-----cHHH----HHHHh-cC
Confidence 4568899999999999999998842111 12 24455433 3344444433211 1111 22222 23
Q ss_pred eEEEEEeCCCCCCc--cChhhhHHhhhc-CCCCceEEEEcCchH---------HHhhhcCcCeEeCCCCCHHHHHHHHHH
Q 038751 278 KFFLILDDVWPDDY--SKWEPFHNCLMN-GLCGSRILVTTRKET---------VARMMESTDVISIKELSEQECWSLFKR 345 (915)
Q Consensus 278 ~~LlVlDdvw~~~~--~~~~~l~~~l~~-~~~gs~iivTtR~~~---------v~~~~~~~~~~~l~~L~~~~~~~lf~~ 345 (915)
.-+|++||+..-.. ...+.+...+.. ...|..||+||.... +...+.....+++++ +.++..+++..
T Consensus 99 ~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~ 177 (324)
T 1l8q_A 99 VDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKE 177 (324)
T ss_dssp CSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHH
T ss_pred CCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHH
Confidence 67999999954321 122334444332 134567888876431 222233336799999 99999999988
Q ss_pred hHcCCCCCCchhHHHHHHHHHHHhcCCCchH
Q 038751 346 FAFSGRSPTECEQLEEIGRKIVGKCKGLPLA 376 (915)
Q Consensus 346 ~~~~~~~~~~~~~l~~~~~~i~~~c~G~PLa 376 (915)
.+....-.-. .+....|++.+ |..-.
T Consensus 178 ~~~~~~~~l~----~~~l~~l~~~~-g~~r~ 203 (324)
T 1l8q_A 178 KLKEFNLELR----KEVIDYLLENT-KNVRE 203 (324)
T ss_dssp HHHHTTCCCC----HHHHHHHHHHC-SSHHH
T ss_pred HHHhcCCCCC----HHHHHHHHHhC-CCHHH
Confidence 7643222122 23456677778 76654
No 176
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.01 E-value=1.4e-05 Score=76.81 Aligned_cols=54 Identities=13% Similarity=0.043 Sum_probs=30.8
Q ss_pred cceEEEeeeCCCCCCCcccCccCccEEEEcCcCCCCCCC-CCCCCCCcceeeccccc
Q 038751 732 IKSLEIMVFKGRTPSNWIGSLNKLKMLTLNSFVKCEIMP-PLGKLPSLEILRIWHMR 787 (915)
Q Consensus 732 L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~-~l~~Lp~L~~L~L~~~~ 787 (915)
.+.|+++++....+|..+ .++|+.|+|++|......| .++.+++|++|+|+++.
T Consensus 11 ~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 65 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ 65 (170)
T ss_dssp TTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred CCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCC
Confidence 455666666666666543 3666677776664333222 25666666666666554
No 177
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.98 E-value=7.2e-06 Score=76.49 Aligned_cols=115 Identities=17% Similarity=0.073 Sum_probs=69.3
Q ss_pred ccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHHH
Q 038751 172 DVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIE 251 (915)
Q Consensus 172 ~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 251 (915)
+++|+...++++.+.+..... ...-|.|+|.+|+|||++|+.+++... +..... + ++.+...+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~----~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~-v-~~~~~~~~~--------- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSE----TDIAVWLYGAPGTGRMTGARYLHQFGR-NAQGEF-V-YRELTPDNA--------- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTT----CCSCEEEESSTTSSHHHHHHHHHHSST-TTTSCC-E-EEECCTTTS---------
T ss_pred CceeCCHHHHHHHHHHHHHhC----CCCCEEEECCCCCCHHHHHHHHHHhCC-ccCCCE-E-EECCCCCcc---------
Confidence 578999999999988864322 223478999999999999999987421 111222 3 555542221
Q ss_pred HhhCCCCCcccHHHHHHHHHHHhccCeEEEEEeCCCCCCccChhhhHHhhhcCCCCceEEEEcCch
Q 038751 252 GLEGSLPNLRELNSLLEYIHTSIKEKKFFLILDDVWPDDYSKWEPFHNCLMNGLCGSRILVTTRKE 317 (915)
Q Consensus 252 ~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~ 317 (915)
... ...+... ..-.|++|++..-.......+...+.......+||.||...
T Consensus 66 ---------~~~---~~~~~~a---~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~~ 116 (145)
T 3n70_A 66 ---------PQL---NDFIALA---QGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDTS 116 (145)
T ss_dssp ---------SCH---HHHHHHH---TTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESSC
T ss_pred ---------hhh---hcHHHHc---CCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCcC
Confidence 111 1111111 23478999996655555556666665555566788877753
No 178
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.97 E-value=0.0002 Score=76.65 Aligned_cols=186 Identities=18% Similarity=0.109 Sum_probs=103.8
Q ss_pred ccCccccchHHHHHHHHHHhcccc------cccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCH
Q 038751 169 NVSDVRGRDEEKNILKRKLLCESN------EERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDE 242 (915)
Q Consensus 169 ~~~~~~Gr~~~~~~l~~~L~~~~~------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 242 (915)
.-.+++|.+..++.+.+.+..... ......+-|.++|++|+|||+||+.+++. ....| +.++.+
T Consensus 16 ~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~--~~~~~---~~v~~~----- 85 (322)
T 3eie_A 16 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE--ANSTF---FSVSSS----- 85 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHH--HTCEE---EEEEHH-----
T ss_pred CHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH--HCCCE---EEEchH-----
Confidence 345799999999999888732110 01223467899999999999999999883 22222 223221
Q ss_pred HHHHHHHHHHhhCCCCCcccHHHHHH-HHHHHhccCeEEEEEeCCCCCCc-------cC----hhhhHHhhhc---CCCC
Q 038751 243 FRIAKAIIEGLEGSLPNLRELNSLLE-YIHTSIKEKKFFLILDDVWPDDY-------SK----WEPFHNCLMN---GLCG 307 (915)
Q Consensus 243 ~~~~~~i~~~l~~~~~~~~~~~~~~~-~l~~~l~~k~~LlVlDdvw~~~~-------~~----~~~l~~~l~~---~~~g 307 (915)
.+ . .... ...+.... .+...-..++.+|++|++..-.. .. ...+...+.. ...+
T Consensus 86 -~l----~----~~~~--g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 154 (322)
T 3eie_A 86 -DL----V----SKWM--GESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQG 154 (322)
T ss_dssp -HH----H----TTTG--GGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCC
T ss_pred -HH----h----hccc--chHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCc
Confidence 11 1 1111 11122222 22233345678999999953111 01 2233333322 2345
Q ss_pred ceEEEEcCchH-----HHhhhcCcCeEeCCCCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCC-CchHHHHHH
Q 038751 308 SRILVTTRKET-----VARMMESTDVISIKELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKG-LPLAAKTIG 381 (915)
Q Consensus 308 s~iivTtR~~~-----v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G-~PLai~~~~ 381 (915)
..||.||..+. +.+ .....+.+...+.++-.+++...+......... .....|++.+.| .+-.|..+.
T Consensus 155 v~vi~atn~~~~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~----~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 155 VLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTK----EDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp EEEEEEESCGGGSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCH----HHHHHHHHTTTTCCHHHHHHHH
T ss_pred eEEEEecCChhhCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCH----HHHHHHHHHcCCCCHHHHHHHH
Confidence 56666776532 222 224578889999999999999887543221122 234567788887 454555444
No 179
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.97 E-value=7.2e-05 Score=80.89 Aligned_cols=176 Identities=11% Similarity=0.087 Sum_probs=104.0
Q ss_pred CccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCC-eEEEEEeCCCCCHHHHHHHH
Q 038751 171 SDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFD-KRIWVCVSDPFDEFRIAKAI 249 (915)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i 249 (915)
..++|.+..++.+...+... ....+.++|+.|+||||+|+.+++... ...+. .+.-++.+....
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g------~~~~~ll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~~~~~~~~~~-------- 89 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEG------KLPHLLFYGPPGTGKTSTIVALAREIY-GKNYSNMVLELNASDDRG-------- 89 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTT------CCCCEEEECSSSSSHHHHHHHHHHHHH-TTSHHHHEEEECTTSCCS--------
T ss_pred HHhcCcHHHHHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHHHc-CCCccceEEEEcCccccc--------
Confidence 45789888888888887543 233388999999999999999887421 11111 111222222111
Q ss_pred HHHhhCCCCCcccHHHHHHHHHHHh------ccCeEEEEEeCCCCCCccChhhhHHhhhcCCCCceEEEEcCchH-HHh-
Q 038751 250 IEGLEGSLPNLRELNSLLEYIHTSI------KEKKFFLILDDVWPDDYSKWEPFHNCLMNGLCGSRILVTTRKET-VAR- 321 (915)
Q Consensus 250 ~~~l~~~~~~~~~~~~~~~~l~~~l------~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~-v~~- 321 (915)
.+.+.+.+.... .+.+-++|+|++..-.....+.+...+.......++|++|.... +..
T Consensus 90 -------------~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~ 156 (340)
T 1sxj_C 90 -------------IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPA 156 (340)
T ss_dssp -------------HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHH
T ss_pred -------------HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchh
Confidence 122222222111 23467899999865444455667666666556677777775432 111
Q ss_pred hhcCcCeEeCCCCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCCCchHHH
Q 038751 322 MMESTDVISIKELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKGLPLAAK 378 (915)
Q Consensus 322 ~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~PLai~ 378 (915)
.......+++.+++.++..+.+...+-...-.-. .+..+.|++.++|.+--+.
T Consensus 157 i~sR~~~~~~~~l~~~~~~~~l~~~~~~~~~~i~----~~~~~~i~~~s~G~~r~~~ 209 (340)
T 1sxj_C 157 LLSQCTRFRFQPLPQEAIERRIANVLVHEKLKLS----PNAEKALIELSNGDMRRVL 209 (340)
T ss_dssp HHTTSEEEECCCCCHHHHHHHHHHHHHTTTCCBC----HHHHHHHHHHHTTCHHHHH
T ss_pred HHhhceeEeccCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHH
Confidence 1122457899999999999988876632221111 2345678888999887543
No 180
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.95 E-value=2e-05 Score=78.20 Aligned_cols=100 Identities=24% Similarity=0.318 Sum_probs=55.0
Q ss_pred EEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHhccCe
Q 038751 199 QIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLRELNSLLEYIHTSIKEKK 278 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 278 (915)
+.+.|+|++|+||||||+.+++. .......++|++++ .+...+...... .........+ .. .
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~--~~~~~~~~~~~~~~------~~~~~~~~~~~~-----~~~~~~~~~~----~~-~ 116 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE--LAKRNVSSLIVYVP------ELFRELKHSLQD-----QTMNEKLDYI----KK-V 116 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH--HHTTTCCEEEEEHH------HHHHHHHHC--------CCCHHHHHHH----HH-S
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEhH------HHHHHHHHHhcc-----chHHHHHHHh----cC-C
Confidence 67889999999999999999984 33333455666553 344444332211 1122222222 22 2
Q ss_pred EEEEEeCCCCCCccChhh--hHH-hhhcC-CCCceEEEEcCc
Q 038751 279 FFLILDDVWPDDYSKWEP--FHN-CLMNG-LCGSRILVTTRK 316 (915)
Q Consensus 279 ~LlVlDdvw~~~~~~~~~--l~~-~l~~~-~~gs~iivTtR~ 316 (915)
-+|||||++......|.. +.. .+... ..+.++|+||..
T Consensus 117 ~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 117 PVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp SEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred CEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 399999997544334432 322 22221 245678888874
No 181
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.94 E-value=9.1e-06 Score=78.47 Aligned_cols=93 Identities=27% Similarity=0.338 Sum_probs=67.4
Q ss_pred EEEEEEccccccCccccCCCCceeEEEeccCCCCceeccccc-hhccccCCcceeeecCCCCCccccccc-cCCCcCCCc
Q 038751 536 RHLMLVLGFWAKFPFSIFDAKTLHSLILVYSSNNQVAASPVL-QGLFDQLTCLRALKIEDLPPTIKIPKG-LENLIHLRY 613 (915)
Q Consensus 536 r~Lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~lrv~~~~l-p~~i~~L~~Lr~L~l~~~~~~~~lP~~-i~~L~~Lr~ 613 (915)
+.++++++.+..+|..+. ++|+.|.+.+|. +..+ |..|+++.+|++|+|++|... .+|.. +.+|.+|++
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~------l~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~ 85 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQ------ITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQ 85 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSC------CCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCC------ccccCHHHhcCCcCCCEEECCCCCCC-ccChhHhCCcchhhE
Confidence 467777777766666554 788888888873 4444 567888888888888888777 67765 478888888
Q ss_pred cc-----CcccCCc-CCCCCCCCccCceee
Q 038751 614 LK-----LSMVPNG-IERLTSLRTLSEFAV 637 (915)
Q Consensus 614 L~-----l~~lP~~-i~~L~~L~~L~~~~~ 637 (915)
|+ ++.+|.+ +..+++|++|++..+
T Consensus 86 L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 86 LDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115 (174)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCSEEECCSS
T ss_pred EECCCCccceeCHHHhccccCCCEEEeCCC
Confidence 87 4456665 777888888776543
No 182
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.88 E-value=0.00014 Score=79.13 Aligned_cols=188 Identities=12% Similarity=0.032 Sum_probs=102.2
Q ss_pred cCccccchHHHHHHHHHHhcccc------cccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHH
Q 038751 170 VSDVRGRDEEKNILKRKLLCESN------EERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEF 243 (915)
Q Consensus 170 ~~~~~Gr~~~~~~l~~~L~~~~~------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 243 (915)
-.+++|.+..++.+.+.+..... ......+.|.|+|++|+|||+||+.+++. ... ..+.++.+.-.
T Consensus 83 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~--~~~---~~~~i~~~~l~--- 154 (357)
T 3d8b_A 83 WEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQ--SGA---TFFSISASSLT--- 154 (357)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHH--TTC---EEEEEEGGGGC---
T ss_pred HHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHH--cCC---eEEEEehHHhh---
Confidence 34689999999999888753100 00123567899999999999999999873 221 22344443211
Q ss_pred HHHHHHHHHhhCCCCCcccHHHHHH-HHHHHhccCeEEEEEeCCCCCCc-----------cChhhhHHhhhcC----CCC
Q 038751 244 RIAKAIIEGLEGSLPNLRELNSLLE-YIHTSIKEKKFFLILDDVWPDDY-----------SKWEPFHNCLMNG----LCG 307 (915)
Q Consensus 244 ~~~~~i~~~l~~~~~~~~~~~~~~~-~l~~~l~~k~~LlVlDdvw~~~~-----------~~~~~l~~~l~~~----~~g 307 (915)
....+ ....... .+...-..++.+|+||++..-.. .....+...+... ..+
T Consensus 155 -----------~~~~g--~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~ 221 (357)
T 3d8b_A 155 -----------SKWVG--EGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDR 221 (357)
T ss_dssp -----------CSSTT--HHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCC
T ss_pred -----------ccccc--hHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCC
Confidence 11111 1111122 22222235678999999832100 1122333333321 234
Q ss_pred ceEEEEcCchH-HHhh-h-cCcCeEeCCCCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCC-CchHHHHHHh
Q 038751 308 SRILVTTRKET-VARM-M-ESTDVISIKELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKG-LPLAAKTIGS 382 (915)
Q Consensus 308 s~iivTtR~~~-v~~~-~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G-~PLai~~~~~ 382 (915)
..||.||.... +... . .....+.+...+.++..+++...+........ .+....|++.+.| .+-.+..+..
T Consensus 222 v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~----~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 222 ILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLS----EEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp EEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCC----HHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred EEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCcc----HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 45555665432 1111 1 12347789999999999998877643221111 2345667888888 5555655543
No 183
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.88 E-value=0.00053 Score=73.16 Aligned_cols=189 Identities=17% Similarity=0.102 Sum_probs=102.3
Q ss_pred ccCccccchHHHHHHHHHHhcccc------cccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCH
Q 038751 169 NVSDVRGRDEEKNILKRKLLCESN------EERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDE 242 (915)
Q Consensus 169 ~~~~~~Gr~~~~~~l~~~L~~~~~------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 242 (915)
.-.+++|.+..++.|.+.+..+.. +.....+-|.++|++|+|||+||+.+++... .. ..+.++.+.-.
T Consensus 10 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~-~~---~~~~i~~~~l~-- 83 (322)
T 1xwi_A 10 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN-NS---TFFSISSSDLV-- 83 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT-SC---EEEEEECCSSC--
T ss_pred CHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcC-CC---cEEEEEhHHHH--
Confidence 345789999888888877642110 0112346789999999999999999998420 11 12233333211
Q ss_pred HHHHHHHHHHhhCCCCCcccHHHHHHHHHHHhccCeEEEEEeCCCCCCc-------cCh----hhhHHhhhc---CCCCc
Q 038751 243 FRIAKAIIEGLEGSLPNLRELNSLLEYIHTSIKEKKFFLILDDVWPDDY-------SKW----EPFHNCLMN---GLCGS 308 (915)
Q Consensus 243 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~-------~~~----~~l~~~l~~---~~~gs 308 (915)
....+ .....+...+...-..++.+|++|++..-.. ... ..+...+.. ...+.
T Consensus 84 ------------~~~~g-~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v 150 (322)
T 1xwi_A 84 ------------SKWLG-ESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGI 150 (322)
T ss_dssp ------------CSSCC-SCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTE
T ss_pred ------------hhhhh-HHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCE
Confidence 11111 1112222222233346788999999953200 001 122222222 12344
Q ss_pred eEEEEcCchH-----HHhhhcCcCeEeCCCCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCCC-chHHHHHHh
Q 038751 309 RILVTTRKET-----VARMMESTDVISIKELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKGL-PLAAKTIGS 382 (915)
Q Consensus 309 ~iivTtR~~~-----v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~-PLai~~~~~ 382 (915)
.||.||..+. +.+ .....+.+...+.++-.+++............. .....|++.+.|. +-.+..+..
T Consensus 151 ~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~----~~l~~la~~t~G~sgadl~~l~~ 224 (322)
T 1xwi_A 151 LVLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTE----ADFRELGRKTDGYSGADISIIVR 224 (322)
T ss_dssp EEEEEESCTTTSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCH----HHHHHHHHTCTTCCHHHHHHHHH
T ss_pred EEEEecCCcccCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCH----HHHHHHHHHcCCCCHHHHHHHHH
Confidence 5555665432 222 223578899999999999998876432211122 3356688889887 444555543
No 184
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.85 E-value=0.00017 Score=78.18 Aligned_cols=186 Identities=17% Similarity=0.074 Sum_probs=100.9
Q ss_pred cCccccchHHHHHHHHHHhcccc------cccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHH
Q 038751 170 VSDVRGRDEEKNILKRKLLCESN------EERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEF 243 (915)
Q Consensus 170 ~~~~~Gr~~~~~~l~~~L~~~~~------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 243 (915)
-.+++|.+..++.|.+.+..... ......+-|.|+|++|+|||+||+.+++. .... .+.++.+
T Consensus 50 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~--~~~~---~~~v~~~------ 118 (355)
T 2qp9_X 50 WEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE--ANST---FFSVSSS------ 118 (355)
T ss_dssp GGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHH--HTCE---EEEEEHH------
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCC---EEEeeHH------
Confidence 34689999999999887742100 01122345889999999999999999984 2222 2223222
Q ss_pred HHHHHHHHHhhCCCCCcccHHHHHHHHHHHhccCeEEEEEeCCCCCCcc-----------ChhhhHHhhhc---CCCCce
Q 038751 244 RIAKAIIEGLEGSLPNLRELNSLLEYIHTSIKEKKFFLILDDVWPDDYS-----------KWEPFHNCLMN---GLCGSR 309 (915)
Q Consensus 244 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~-----------~~~~l~~~l~~---~~~gs~ 309 (915)
.+ . ....+ .....+...+...-..++.+|++|++..-... ....+...+.. ...+..
T Consensus 119 ~l----~----~~~~g-~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~ 189 (355)
T 2qp9_X 119 DL----V----SKWMG-ESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVL 189 (355)
T ss_dssp HH----H----SCC----CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEE
T ss_pred HH----h----hhhcc-hHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeE
Confidence 11 1 11111 11122222222333457889999999532110 02223333322 123455
Q ss_pred EEEEcCchH-----HHhhhcCcCeEeCCCCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCC-CchHHHHHH
Q 038751 310 ILVTTRKET-----VARMMESTDVISIKELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKG-LPLAAKTIG 381 (915)
Q Consensus 310 iivTtR~~~-----v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G-~PLai~~~~ 381 (915)
||.||..+. +.+ .....+.+...+.++-.+++..++......... .....|++.+.| .+-.|..+.
T Consensus 190 vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~----~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 190 VLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTK----EDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp EEEEESCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCH----HHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEeecCCcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCH----HHHHHHHHHcCCCCHHHHHHHH
Confidence 666666442 222 224578899999999999998876433211122 234567788888 454455544
No 185
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.84 E-value=2.9e-05 Score=75.43 Aligned_cols=120 Identities=14% Similarity=0.136 Sum_probs=64.1
Q ss_pred hHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhhCC
Q 038751 177 DEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGS 256 (915)
Q Consensus 177 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 256 (915)
....+.+.+++..-. ......+.|+|++|+||||||+.+++.......+. +++++ ..++...+.......
T Consensus 20 ~~~~~~~~~~~~~~~---~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~-~~~~~------~~~~~~~~~~~~~~~ 89 (180)
T 3ec2_A 20 NRALLTIRVFVHNFN---PEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR-GYFFD------TKDLIFRLKHLMDEG 89 (180)
T ss_dssp HHHHHHHHHHHHSCC---GGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC-CCEEE------HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcc---ccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe-EEEEE------HHHHHHHHHHHhcCc
Confidence 334444444443321 12346789999999999999999988432122222 23433 344555544443322
Q ss_pred CCCcccHHHHHHHHHHHhccCeEEEEEeCCCCCCccChh--hhHHhhhcC-CCCceEEEEcCc
Q 038751 257 LPNLRELNSLLEYIHTSIKEKKFFLILDDVWPDDYSKWE--PFHNCLMNG-LCGSRILVTTRK 316 (915)
Q Consensus 257 ~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~--~l~~~l~~~-~~gs~iivTtR~ 316 (915)
... ..... + .+.-+|||||++......|. .+...+... ..|..+|+||..
T Consensus 90 ~~~-----~~~~~----~-~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 90 KDT-----KFLKT----V-LNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp CCS-----HHHHH----H-HTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred hHH-----HHHHH----h-cCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 111 12221 2 24568999999743333343 233333322 256788888864
No 186
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.83 E-value=0.00062 Score=71.89 Aligned_cols=185 Identities=17% Similarity=0.131 Sum_probs=100.1
Q ss_pred cCccccchHHHHHHHHHHhcccc------cccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHH
Q 038751 170 VSDVRGRDEEKNILKRKLLCESN------EERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEF 243 (915)
Q Consensus 170 ~~~~~Gr~~~~~~l~~~L~~~~~------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 243 (915)
-.+++|.+..++.+.+.+..... +-....+.+.|+|++|+||||+|+.+++. .... .+.++.+.-.
T Consensus 20 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~--~~~~---~~~i~~~~l~--- 91 (297)
T 3b9p_A 20 WTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATE--CSAT---FLNISAASLT--- 91 (297)
T ss_dssp GGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHH--TTCE---EEEEESTTTS---
T ss_pred HHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH--hCCC---eEEeeHHHHh---
Confidence 35699999999999888743210 00123467899999999999999999873 2211 2334433211
Q ss_pred HHHHHHHHHhhCCCCCcccHHHHHH-HHHHHhccCeEEEEEeCCCCCCcc-----------ChhhhHHhhhcC-----CC
Q 038751 244 RIAKAIIEGLEGSLPNLRELNSLLE-YIHTSIKEKKFFLILDDVWPDDYS-----------KWEPFHNCLMNG-----LC 306 (915)
Q Consensus 244 ~~~~~i~~~l~~~~~~~~~~~~~~~-~l~~~l~~k~~LlVlDdvw~~~~~-----------~~~~l~~~l~~~-----~~ 306 (915)
....+ +...... .+......++.+|++|++..-... ....+...+... ..
T Consensus 92 -----------~~~~~--~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 158 (297)
T 3b9p_A 92 -----------SKYVG--DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGD 158 (297)
T ss_dssp -----------SSSCS--CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------
T ss_pred -----------hcccc--hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCC
Confidence 11111 1122222 222233456789999998431100 011122222221 12
Q ss_pred CceEEEEcCchH-----HHhhhcCcCeEeCCCCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCCCch-HHHHH
Q 038751 307 GSRILVTTRKET-----VARMMESTDVISIKELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKGLPL-AAKTI 380 (915)
Q Consensus 307 gs~iivTtR~~~-----v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~PL-ai~~~ 380 (915)
+..||.||..+. +.+ .....+.+...+.++-..++...+........ .+....|++.+.|.+- ++..+
T Consensus 159 ~v~vi~~tn~~~~l~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~----~~~~~~la~~~~g~~~~~l~~l 232 (297)
T 3b9p_A 159 RIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLD----TEALRRLAKITDGYSGSDLTAL 232 (297)
T ss_dssp CEEEEEEESCGGGBCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSCCSC----HHHHHHHHHHTTTCCHHHHHHH
T ss_pred cEEEEeecCChhhCCHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHcCCCCHHHHHHH
Confidence 345666776542 222 12356778888888888888776533221111 2345667888888876 44444
Q ss_pred H
Q 038751 381 G 381 (915)
Q Consensus 381 ~ 381 (915)
.
T Consensus 233 ~ 233 (297)
T 3b9p_A 233 A 233 (297)
T ss_dssp H
T ss_pred H
Confidence 3
No 187
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.82 E-value=1.6e-05 Score=76.39 Aligned_cols=94 Identities=28% Similarity=0.344 Sum_probs=66.4
Q ss_pred eEEEEEEccccccCccccCCCCceeEEEeccCCCCceeccccc-hhccccCCcceeeecCCCCCccccccc-cCCCcCCC
Q 038751 535 LRHLMLVLGFWAKFPFSIFDAKTLHSLILVYSSNNQVAASPVL-QGLFDQLTCLRALKIEDLPPTIKIPKG-LENLIHLR 612 (915)
Q Consensus 535 ~r~Lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~lrv~~~~l-p~~i~~L~~Lr~L~l~~~~~~~~lP~~-i~~L~~Lr 612 (915)
.+.++++++.+..+|..+. ++|++|.+.+| .+..+ |..|+++.+|++|++++|... .+|.. +.+|.+|+
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N------~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~ 81 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDN------QITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLT 81 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSS------CCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCC
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCC------cCCccChhhhcCcccCCEEECCCCCcC-ccChhhccCCCCCC
Confidence 4567777777776665553 77888888877 34445 567888888888888888777 66655 57888888
Q ss_pred ccc-----CcccCCc-CCCCCCCCccCceee
Q 038751 613 YLK-----LSMVPNG-IERLTSLRTLSEFAV 637 (915)
Q Consensus 613 ~L~-----l~~lP~~-i~~L~~L~~L~~~~~ 637 (915)
+|+ ++.+|.+ +.++++|++|++..+
T Consensus 82 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 82 QLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEECCCCccCEeCHHHhcCCCCCCEEEeCCC
Confidence 887 4456654 677788887776543
No 188
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.79 E-value=2e-05 Score=73.15 Aligned_cols=111 Identities=13% Similarity=0.114 Sum_probs=62.9
Q ss_pred CccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 038751 171 SDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAII 250 (915)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 250 (915)
..++|++..++++.+.+..... ...-|.|+|.+|+|||++|+.+++... -++.+.-..-....
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~----~~~~vll~G~~GtGKt~lA~~i~~~~~--------~~~~~~~~~~~~~~----- 66 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAK----RTSPVFLTGEAGSPFETVARYFHKNGT--------PWVSPARVEYLIDM----- 66 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHT----CSSCEEEEEETTCCHHHHHGGGCCTTS--------CEECCSSTTHHHHC-----
T ss_pred cCceeCCHHHHHHHHHHHHHhC----CCCcEEEECCCCccHHHHHHHHHHhCC--------CeEEechhhCChHh-----
Confidence 3578999999988888764322 123377999999999999999987421 22222211100000
Q ss_pred HHhhCCCCCcccHHHHHHHHHHHhccCeEEEEEeCCCCCCccChhhhHHhhhcC-CCCceEEEEcCc
Q 038751 251 EGLEGSLPNLRELNSLLEYIHTSIKEKKFFLILDDVWPDDYSKWEPFHNCLMNG-LCGSRILVTTRK 316 (915)
Q Consensus 251 ~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~-~~gs~iivTtR~ 316 (915)
. ..+.+. .+.-.|++|++..-.......+...+... ..+.++|.||..
T Consensus 67 ---------------~-~~~~~~--a~~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~ 115 (143)
T 3co5_A 67 ---------------P-MELLQK--AEGGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCSY 115 (143)
T ss_dssp ---------------H-HHHHHH--TTTSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEEE
T ss_pred ---------------h-hhHHHh--CCCCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 0 111111 12347899999665444455565555543 345678887764
No 189
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.78 E-value=9.3e-05 Score=78.03 Aligned_cols=147 Identities=14% Similarity=0.000 Sum_probs=92.3
Q ss_pred chHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccc-cc-cCCCeEEEEEeCC-CCCHHHHHHHHHHH
Q 038751 176 RDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKD-VI-ENFDKRIWVCVSD-PFDEFRIAKAIIEG 252 (915)
Q Consensus 176 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~-~~F~~~~wv~vs~-~~~~~~~~~~i~~~ 252 (915)
-++.++.+...+... ..+...++|+.|+||||+|+.+.+... .. .+.+ ..++..+. ...... .+++++.
T Consensus 2 ~~~~~~~L~~~i~~~------~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d-~~~l~~~~~~~~id~-ir~li~~ 73 (305)
T 2gno_A 2 AKDQLETLKRIIEKS------EGISILINGEDLSYPREVSLELPEYVEKFPPKASD-VLEIDPEGENIGIDD-IRTIKDF 73 (305)
T ss_dssp --CHHHHHHHHHHTC------SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTT-EEEECCSSSCBCHHH-HHHHHHH
T ss_pred hHHHHHHHHHHHHCC------CCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCC-EEEEcCCcCCCCHHH-HHHHHHH
Confidence 344566666666432 257889999999999999999876310 11 1233 34444332 222222 2333333
Q ss_pred hhCCCCCcccHHHHHHHHHHHhccCeEEEEEeCCCCCCccChhhhHHhhhcCCCCceEEEEcCch-HHHhhhcCcCeEeC
Q 038751 253 LEGSLPNLRELNSLLEYIHTSIKEKKFFLILDDVWPDDYSKWEPFHNCLMNGLCGSRILVTTRKE-TVARMMESTDVISI 331 (915)
Q Consensus 253 l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~~~~~~~~~l 331 (915)
+.... ..+++-++|+|++..-.....+.+...+......+.+|++|.++ .+...+... .+++
T Consensus 74 ~~~~p----------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f 136 (305)
T 2gno_A 74 LNYSP----------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRV 136 (305)
T ss_dssp HTSCC----------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEE
T ss_pred Hhhcc----------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeC
Confidence 32111 12456789999997666667778888888777788888877554 333333334 9999
Q ss_pred CCCCHHHHHHHHHHhH
Q 038751 332 KELSEQECWSLFKRFA 347 (915)
Q Consensus 332 ~~L~~~~~~~lf~~~~ 347 (915)
.++++++..+.+.+.+
T Consensus 137 ~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 137 VVNVPKEFRDLVKEKI 152 (305)
T ss_dssp ECCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999998876
No 190
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.78 E-value=6.3e-05 Score=81.65 Aligned_cols=58 Identities=16% Similarity=0.070 Sum_probs=31.2
Q ss_pred eEEEeee-CCCCCCCcccCccCccEEEEcCcCCCCCCCC--CCCCCCcceeeccccccceEeC
Q 038751 734 SLEIMVF-KGRTPSNWIGSLNKLKMLTLNSFVKCEIMPP--LGKLPSLEILRIWHMRSVKRVG 793 (915)
Q Consensus 734 ~L~l~~~-~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~--l~~Lp~L~~L~L~~~~~l~~~~ 793 (915)
.++..++ ....+|. +..+++|+.|+|+++..+..+++ ++.|++|++|+|++|. +..++
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~ 72 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVA 72 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC-CCEEC
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCc-cceeC
Confidence 3455554 4555666 66666666666664223333332 5566666666666654 44443
No 191
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.75 E-value=0.00013 Score=88.95 Aligned_cols=154 Identities=18% Similarity=0.208 Sum_probs=81.3
Q ss_pred CccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhccccc---ccCC-C-eEEEEEeCCCCCHHHH
Q 038751 171 SDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDV---IENF-D-KRIWVCVSDPFDEFRI 245 (915)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~~F-~-~~~wv~vs~~~~~~~~ 245 (915)
..++||+.+++++++.|... ...-+.++|++|+||||+|+.+++...- .... . .+++++.+.-..
T Consensus 170 d~viGr~~~i~~l~~~l~~~------~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~---- 239 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRR------TKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA---- 239 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCS------SCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC---------
T ss_pred cccCCcHHHHHHHHHHHhcC------CCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc----
Confidence 45899999999999999653 2344689999999999999998874211 0011 1 233333322100
Q ss_pred HHHHHHHhhCCCCCcccHHH-HHHHHHHHhc-cCeEEEEEeCCCCCC--------ccChhhhHHhhhcCCCCceEEEEcC
Q 038751 246 AKAIIEGLEGSLPNLRELNS-LLEYIHTSIK-EKKFFLILDDVWPDD--------YSKWEPFHNCLMNGLCGSRILVTTR 315 (915)
Q Consensus 246 ~~~i~~~l~~~~~~~~~~~~-~~~~l~~~l~-~k~~LlVlDdvw~~~--------~~~~~~l~~~l~~~~~gs~iivTtR 315 (915)
+... ..+... +...+...-. +++.+|++|++..-. ....+.+...+.. .+..+|.+|.
T Consensus 240 ---------g~~~-~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~--~~i~~I~at~ 307 (854)
T 1qvr_A 240 ---------GAKY-RGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALAR--GELRLIGATT 307 (854)
T ss_dssp ----------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHT--TCCCEEEEEC
T ss_pred ---------cCcc-chHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhC--CCeEEEEecC
Confidence 0000 011222 2222222222 367899999995421 1112224444433 2345666665
Q ss_pred chHHHh------hhcCcCeEeCCCCCHHHHHHHHHHh
Q 038751 316 KETVAR------MMESTDVISIKELSEQECWSLFKRF 346 (915)
Q Consensus 316 ~~~v~~------~~~~~~~~~l~~L~~~~~~~lf~~~ 346 (915)
...... .......+.+++++.++..+++...
T Consensus 308 ~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~ 344 (854)
T 1qvr_A 308 LDEYREIEKDPALERRFQPVYVDEPTVEETISILRGL 344 (854)
T ss_dssp HHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHH
T ss_pred chHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhh
Confidence 443211 1122346899999999999998643
No 192
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.74 E-value=0.00061 Score=76.18 Aligned_cols=190 Identities=17% Similarity=0.115 Sum_probs=100.3
Q ss_pred ccCccccchHHHHHHHHHHhccc------ccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCH
Q 038751 169 NVSDVRGRDEEKNILKRKLLCES------NEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDE 242 (915)
Q Consensus 169 ~~~~~~Gr~~~~~~l~~~L~~~~------~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 242 (915)
.-.+++|.+..++.+.+.+..+. .+.....+-|.++|++|+|||+||+.+++.. ...-++.++...
T Consensus 132 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~------~~~~~~~v~~~~-- 203 (444)
T 2zan_A 132 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA------NNSTFFSISSSD-- 203 (444)
T ss_dssp CGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHC------CSSEEEEECCC---
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHc------CCCCEEEEeHHH--
Confidence 34569999999998888773210 0012234678999999999999999999842 111233333221
Q ss_pred HHHHHHHHHHhhCCCCCcccHHHHHHHHHHHhccCeEEEEEeCCCCCCc-------cChhhhHHh----hhc---CCCCc
Q 038751 243 FRIAKAIIEGLEGSLPNLRELNSLLEYIHTSIKEKKFFLILDDVWPDDY-------SKWEPFHNC----LMN---GLCGS 308 (915)
Q Consensus 243 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~-------~~~~~l~~~----l~~---~~~gs 308 (915)
+. ....+.. ......+ +...-..++.+|++|++..-.. .....+... +.. ...+.
T Consensus 204 --l~----~~~~g~~--~~~~~~~---f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v 272 (444)
T 2zan_A 204 --LV----SKWLGES--EKLVKNL---FQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGI 272 (444)
T ss_dssp --------------C--CCTHHHH---HHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSC
T ss_pred --HH----hhhcchH--HHHHHHH---HHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCE
Confidence 11 1111111 1112222 2222245678999999953210 111122222 221 12455
Q ss_pred eEEEEcCchHHHh-h-h-cCcCeEeCCCCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCCC-chHHHHHH
Q 038751 309 RILVTTRKETVAR-M-M-ESTDVISIKELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKGL-PLAAKTIG 381 (915)
Q Consensus 309 ~iivTtR~~~v~~-~-~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~-PLai~~~~ 381 (915)
.||.||..+.... . . .....+.+...+.++-..+|..++......... .....|++.+.|. +-.|..+.
T Consensus 273 ~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~----~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 273 LVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTE----ADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp EEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECCH----HHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCH----HHHHHHHHHcCCCCHHHHHHHH
Confidence 6666776542111 1 1 123477888888898889998876432211112 2345677888884 44555443
No 193
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.72 E-value=7.4e-06 Score=77.86 Aligned_cols=85 Identities=15% Similarity=0.223 Sum_probs=54.0
Q ss_pred ccCcccceeeecCcccccccccCCCCcccC----cccceeecccCccccCCC-cCCCCCCCcCeEeEcCCcchhHhhccC
Q 038751 817 IAFPKLQKLELTGMDELEEWDFGNDDITIM----PHIKSLYITYCEKLKSLP-ELLLRSTTLESLTIFGVPIVQESFKRR 891 (915)
Q Consensus 817 ~~f~~L~~L~l~~~~~l~~~~~~~~~~~~l----p~L~~L~l~~c~~L~~lp-~~l~~l~~L~~L~l~~c~~l~~~~~~~ 891 (915)
..+++|+.|++++|..++...+.. ++.+ ++|++|+|++|++++.-- ..+.++++|++|+|++||.+...-
T Consensus 82 ~~~~~L~~L~L~~C~~ItD~gL~~--L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~Itd~g--- 156 (176)
T 3e4g_A 82 EGLQYVEKIRLCKCHYIEDGCLER--LSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEKE--- 156 (176)
T ss_dssp TTCSCCCEEEEESCTTCCHHHHHH--HHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCCCHH---
T ss_pred cCCCCCCEEEeCCCCccCHHHHHH--HHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCCchH---
Confidence 467788888888887766554321 2232 578999999998776411 224568899999999998864321
Q ss_pred CCCCcccc-cCCCcceec
Q 038751 892 TEKDWSKI-SHIPNIKIQ 908 (915)
Q Consensus 892 ~~~~~~~i-~~ip~v~~~ 908 (915)
.....+ +++|++.|+
T Consensus 157 --l~~~~L~~~lP~l~V~ 172 (176)
T 3e4g_A 157 --KIVQAFKTSLPSLELK 172 (176)
T ss_dssp --HHHHHHHHHCTTCEEE
T ss_pred --HHHHHHHHHCCCcEEE
Confidence 001112 577777665
No 194
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.69 E-value=0.00016 Score=77.04 Aligned_cols=135 Identities=16% Similarity=0.266 Sum_probs=74.6
Q ss_pred ccccchHHHHHHHHHHhcccc---cccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHH
Q 038751 172 DVRGRDEEKNILKRKLLCESN---EERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKA 248 (915)
Q Consensus 172 ~~~Gr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 248 (915)
.++|.+..++.+...+..... ........+.++|++|+|||++|+.+++. ....-...+.+..+...... ....
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~--~~~~~~~~~~~~~~~~~~~~-~~~~ 94 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT--LFDTEEAMIRIDMTEYMEKH-AVSR 94 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHH--HHSCGGGEEEEEGGGCCSTT-HHHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHH--HcCCCcceEEeecccccccc-cHHH
Confidence 578999999888888865321 01123468999999999999999999873 21111224455554332221 1111
Q ss_pred HHHHhhCCCCC---cccHHHHHHHHHHHhccCeEEEEEeCCCCCCccChhhhHHhhhcCC-----------CCceEEEEc
Q 038751 249 IIEGLEGSLPN---LRELNSLLEYIHTSIKEKKFFLILDDVWPDDYSKWEPFHNCLMNGL-----------CGSRILVTT 314 (915)
Q Consensus 249 i~~~l~~~~~~---~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iivTt 314 (915)
+ + +..++ ......+...+. ....-++++|++..........+...+..+. ....||.||
T Consensus 95 l---~-g~~~~~~~~~~~~~~~~~~~---~~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~tt 167 (311)
T 4fcw_A 95 L---I-GAPPGYVGYEEGGQLTEAVR---RRPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTS 167 (311)
T ss_dssp H---H-CCCTTSTTTTTCCHHHHHHH---HCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEE
T ss_pred h---c-CCCCccccccccchHHHHHH---hCCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEec
Confidence 1 1 11111 111122222222 2334699999996555555666666665432 233477777
Q ss_pred Cc
Q 038751 315 RK 316 (915)
Q Consensus 315 R~ 316 (915)
..
T Consensus 168 n~ 169 (311)
T 4fcw_A 168 NL 169 (311)
T ss_dssp ST
T ss_pred cc
Confidence 65
No 195
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.69 E-value=0.00061 Score=72.04 Aligned_cols=182 Identities=14% Similarity=0.102 Sum_probs=100.6
Q ss_pred cCccccchHHHHHHHHHHhcccc-------cccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCH
Q 038751 170 VSDVRGRDEEKNILKRKLLCESN-------EERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDE 242 (915)
Q Consensus 170 ~~~~~Gr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 242 (915)
-.+++|.+..++.+.+.+...-. .+-...+.|.|+|++|+|||+||+.+++. .... ++.++ .
T Consensus 14 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~--~~~~-----~i~v~----~ 82 (301)
T 3cf0_A 14 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE--CQAN-----FISIK----G 82 (301)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHH--TTCE-----EEEEC----H
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHH--hCCC-----EEEEE----h
Confidence 34689999988888887753200 01123467899999999999999999984 2222 22222 2
Q ss_pred HHHHHHHHHHhhCCCCCcccHHHHHHHHHHHhccCeEEEEEeCCCCCC--------------ccChhhhHHhhhc--CCC
Q 038751 243 FRIAKAIIEGLEGSLPNLRELNSLLEYIHTSIKEKKFFLILDDVWPDD--------------YSKWEPFHNCLMN--GLC 306 (915)
Q Consensus 243 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~--------------~~~~~~l~~~l~~--~~~ 306 (915)
..+. ....+... ..+...+.......+.+|++|++..-. ......+...+.. ...
T Consensus 83 ~~l~----~~~~g~~~-----~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~ 153 (301)
T 3cf0_A 83 PELL----TMWFGESE-----ANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKK 153 (301)
T ss_dssp HHHH----HHHHTTCT-----THHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTS
T ss_pred HHHH----hhhcCchH-----HHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCC
Confidence 2222 22222211 122333334444568899999994200 0012334444432 123
Q ss_pred CceEEEEcCchHHH-hh-hc---CcCeEeCCCCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCCCchH
Q 038751 307 GSRILVTTRKETVA-RM-ME---STDVISIKELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKGLPLA 376 (915)
Q Consensus 307 gs~iivTtR~~~v~-~~-~~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~PLa 376 (915)
+..||.||..+... .. .. ....+.+...+.++-.+++......... .....+ ..+++.+.|.|-+
T Consensus 154 ~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~-~~~~~~----~~la~~~~g~sg~ 223 (301)
T 3cf0_A 154 NVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPV-AKDVDL----EFLAKMTNGFSGA 223 (301)
T ss_dssp SEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB-CSSCCH----HHHHHTCSSCCHH
T ss_pred CEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCC-CccchH----HHHHHHcCCCCHH
Confidence 55677777655321 11 12 2357889999999988988776633211 111122 3455667777654
No 196
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.67 E-value=6.2e-06 Score=78.39 Aligned_cols=87 Identities=9% Similarity=0.144 Sum_probs=55.4
Q ss_pred cCccEEEEcCcCCCCCCCCCCCCCC---cceeeccccccceEeCccccCCcccccccccccCCCccccc----Cccccee
Q 038751 753 NKLKMLTLNSFVKCEIMPPLGKLPS---LEILRIWHMRSVKRVGDEFLGMEISDHIHIHGTSSSSSVIA----FPKLQKL 825 (915)
Q Consensus 753 ~~L~~L~L~~~~~~~~l~~l~~Lp~---L~~L~L~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~----f~~L~~L 825 (915)
.+|+.|++++|. .... .+..+.. |++|+|++|..+++-+-.. +.. .++|+.|
T Consensus 61 ~~L~~LDLs~~~-Itd~-GL~~L~~~~~L~~L~L~~C~~ItD~gL~~-------------------L~~~~~~~~~L~~L 119 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSI-GFDHMEGLQYVEKIRLCKCHYIEDGCLER-------------------LSQLENLQKSMLEM 119 (176)
T ss_dssp CCEEEEEEESCC-CCGG-GGGGGTTCSCCCEEEEESCTTCCHHHHHH-------------------HHTCHHHHHHCCEE
T ss_pred ceEeEEeCcCCC-ccHH-HHHHhcCCCCCCEEEeCCCCccCHHHHHH-------------------HHhcccccCCCCEE
Confidence 368888888775 2111 1223332 5666666666544322111 112 3589999
Q ss_pred eecCcccccccccCCCCcccCcccceeecccCccccC
Q 038751 826 ELTGMDELEEWDFGNDDITIMPHIKSLYITYCEKLKS 862 (915)
Q Consensus 826 ~l~~~~~l~~~~~~~~~~~~lp~L~~L~l~~c~~L~~ 862 (915)
++++|++++.-.+.. +..+|+|++|++++|+.++.
T Consensus 120 ~Ls~C~~ITD~Gl~~--L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 120 EIISCGNVTDKGIIA--LHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp EEESCTTCCHHHHHH--GGGCTTCCEEEEESCTTCCC
T ss_pred EcCCCCcCCHHHHHH--HhcCCCCCEEECCCCCCCCc
Confidence 999999887654322 45789999999999998775
No 197
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.66 E-value=0.0011 Score=72.93 Aligned_cols=188 Identities=14% Similarity=0.100 Sum_probs=98.9
Q ss_pred ccCccccchHHHHHHHHHHhcccc------cccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCH
Q 038751 169 NVSDVRGRDEEKNILKRKLLCESN------EERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDE 242 (915)
Q Consensus 169 ~~~~~~Gr~~~~~~l~~~L~~~~~------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 242 (915)
.-.+++|.+..++.+.+.+..... ......+-|.|+|++|+|||+||+.+++. ... ..+.++.+.-..
T Consensus 113 ~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~--~~~---~~~~v~~~~l~~- 186 (389)
T 3vfd_A 113 KFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAE--SNA---TFFNISAASLTS- 186 (389)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHH--TTC---EEEEECSCCC---
T ss_pred ChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHh--hcC---cEEEeeHHHhhc-
Confidence 345799999999999988743210 00112467899999999999999999873 221 123333322111
Q ss_pred HHHHHHHHHHhhCCCCCcccHHHHHHHHHHHhccCeEEEEEeCCCCCC-------ccCh----hhhHHhhhc----CCCC
Q 038751 243 FRIAKAIIEGLEGSLPNLRELNSLLEYIHTSIKEKKFFLILDDVWPDD-------YSKW----EPFHNCLMN----GLCG 307 (915)
Q Consensus 243 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~-------~~~~----~~l~~~l~~----~~~g 307 (915)
...+ .....+...+...-...+.+|+||++..-. .... ..+...+.. ....
T Consensus 187 -------------~~~g-~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 252 (389)
T 3vfd_A 187 -------------KYVG-EGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDR 252 (389)
T ss_dssp -------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----C
T ss_pred -------------cccc-hHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCC
Confidence 0000 011112222222223456799999994210 0011 122222221 1223
Q ss_pred ceEEEEcCchH-HHhh-hcC-cCeEeCCCCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCCCch-HHHHH
Q 038751 308 SRILVTTRKET-VARM-MES-TDVISIKELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKGLPL-AAKTI 380 (915)
Q Consensus 308 s~iivTtR~~~-v~~~-~~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~PL-ai~~~ 380 (915)
..||.||.... +... ... ...+.+...+.++..+++...+........ .+....|++.+.|..- ++..+
T Consensus 253 v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~----~~~~~~la~~~~g~~~~~l~~L 325 (389)
T 3vfd_A 253 VLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLT----QKELAQLARMTDGYSGSDLTAL 325 (389)
T ss_dssp EEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSC----HHHHHHHHHHTTTCCHHHHHHH
T ss_pred EEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHcCCCCHHHHHHH
Confidence 45555665432 1111 112 346889999999999999887643322122 2345678888888554 55444
No 198
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.64 E-value=0.00029 Score=79.40 Aligned_cols=145 Identities=17% Similarity=0.203 Sum_probs=78.6
Q ss_pred CccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCC------Ce-EEEEEeCCCCCHH
Q 038751 171 SDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENF------DK-RIWVCVSDPFDEF 243 (915)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F------~~-~~wv~vs~~~~~~ 243 (915)
+.++||+.+++++.+.|.... ..-+.++|++|+|||++|+.+++. +...+ .. .+.++.+
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~------~~~~LL~G~pG~GKT~la~~la~~--l~~~~~p~~l~~~~~~~l~~~------ 245 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRT------KNNPVLIGEPGVGKTAIAEGLAQQ--IINNEVPEILRDKRVMTLDMG------ 245 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS------SCEEEEESCTTTTTHHHHHHHHHH--HHSSCSCTTTSSCCEECC---------
T ss_pred CCccCcHHHHHHHHHHHhccC------CCCeEEECCCCCCHHHHHHHHHHH--HHhCCCChhhcCCeEEEeeCC------
Confidence 459999999999999996532 234579999999999999998873 21111 11 1122222
Q ss_pred HHHHHHHHHhhCCCCCcccHHHHHHHHHHHhccCeEEEEEeCCCCCCccChhhhHHhhhcCCCCceEEEEcCchHHHh--
Q 038751 244 RIAKAIIEGLEGSLPNLRELNSLLEYIHTSIKEKKFFLILDDVWPDDYSKWEPFHNCLMNGLCGSRILVTTRKETVAR-- 321 (915)
Q Consensus 244 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~-- 321 (915)
....+.. ... +...+...-..++.+|++|. ..+..+.+...+.. ...++|.+|.......
T Consensus 246 -------~~~~g~~--e~~---~~~~~~~~~~~~~~iLfiD~----~~~a~~~L~~~L~~--g~v~vI~at~~~e~~~~~ 307 (468)
T 3pxg_A 246 -------TKYRGEF--EDR---LKKVMDEIRQAGNIILFIDA----AIDASNILKPSLAR--GELQCIGATTLDEYRKYI 307 (468)
T ss_dssp ----------------CTT---HHHHHHHHHTCCCCEEEECC------------CCCTTS--SSCEEEEECCTTTTHHHH
T ss_pred -------ccccchH--HHH---HHHHHHHHHhcCCeEEEEeC----chhHHHHHHHhhcC--CCEEEEecCCHHHHHHHh
Confidence 0000110 011 22222223335678899991 11222233333332 2345666665443111
Q ss_pred -----hhcCcCeEeCCCCCHHHHHHHHHHhH
Q 038751 322 -----MMESTDVISIKELSEQECWSLFKRFA 347 (915)
Q Consensus 322 -----~~~~~~~~~l~~L~~~~~~~lf~~~~ 347 (915)
......++.+++.+.++...++....
T Consensus 308 ~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 308 EKDAALERRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp TTCSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred hcCHHHHHhCccceeCCCCHHHHHHHHHHHH
Confidence 11223479999999999999998754
No 199
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.58 E-value=0.00027 Score=79.49 Aligned_cols=98 Identities=14% Similarity=0.087 Sum_probs=59.2
Q ss_pred EEEEEeCCCCCCccChhhhHHhhhcCCCCceEEEEc----------C----chHH-HhhhcCcCeEeCCCCCHHHHHHHH
Q 038751 279 FFLILDDVWPDDYSKWEPFHNCLMNGLCGSRILVTT----------R----KETV-ARMMESTDVISIKELSEQECWSLF 343 (915)
Q Consensus 279 ~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTt----------R----~~~v-~~~~~~~~~~~l~~L~~~~~~~lf 343 (915)
-++++|++..-+.+..+.+...+...... .+|+.| . ...+ .........+.+.+++.++..+++
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL 375 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQII 375 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHHH
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHHH
Confidence 38999999766666677777777665444 344344 2 1111 111223446799999999999999
Q ss_pred HHhHcCCCCCCchhHHHHHHHHHHHhc-CCCchHHHHHH
Q 038751 344 KRFAFSGRSPTECEQLEEIGRKIVGKC-KGLPLAAKTIG 381 (915)
Q Consensus 344 ~~~~~~~~~~~~~~~l~~~~~~i~~~c-~G~PLai~~~~ 381 (915)
..++-....... .+....|++.+ .|.|..+..+.
T Consensus 376 ~~~~~~~~~~~~----~~~~~~i~~~a~~g~~r~a~~ll 410 (456)
T 2c9o_A 376 KIRAQTEGINIS----EEALNHLGEIGTKTTLRYSVQLL 410 (456)
T ss_dssp HHHHHHHTCCBC----HHHHHHHHHHHHHSCHHHHHHTH
T ss_pred HHHHHHhCCCCC----HHHHHHHHHHccCCCHHHHHHHH
Confidence 877531111111 23455677777 78887655443
No 200
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.58 E-value=0.00017 Score=74.86 Aligned_cols=158 Identities=13% Similarity=0.097 Sum_probs=79.7
Q ss_pred CccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 038751 171 SDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAII 250 (915)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 250 (915)
..++|.+..+.++.+.+..... ...-|.|+|.+|+|||++|+.+++... +.. ...+.++.+.- .. ..+..
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~----~~~~vll~G~~GtGKt~la~~i~~~~~-~~~-~~~~~v~~~~~-~~-~~~~~-- 75 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAP----LDKPVLIIGERGTGKELIASRLHYLSS-RWQ-GPFISLNCAAL-NE-NLLDS-- 75 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTT----SCSCEEEECCTTSCHHHHHHHHHHTST-TTT-SCEEEEEGGGS-CH-HHHHH--
T ss_pred ccceeCCHHHHHHHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHHHhcC-ccC-CCeEEEecCCC-Ch-hHHHH--
Confidence 4588999999988887754322 224578999999999999999987421 111 12344555542 22 22221
Q ss_pred HHhhCCCCCccc--HHHHHHHHHHHhccCeEEEEEeCCCCCCccChhhhHHhhhcC-----------CCCceEEEEcCch
Q 038751 251 EGLEGSLPNLRE--LNSLLEYIHTSIKEKKFFLILDDVWPDDYSKWEPFHNCLMNG-----------LCGSRILVTTRKE 317 (915)
Q Consensus 251 ~~l~~~~~~~~~--~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~-----------~~gs~iivTtR~~ 317 (915)
.+.+...+.-. .......+.. ...-+|+||++..-.......+...+..+ ..+.+||.||...
T Consensus 76 -~l~g~~~~~~~g~~~~~~~~l~~---a~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~~ 151 (265)
T 2bjv_A 76 -ELFGHEAGAFTGAQKRHPGRFER---ADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNAD 151 (265)
T ss_dssp -HHHCCC---------CCCCHHHH---TTTSEEEEESGGGSCHHHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESSC
T ss_pred -HhcCCcccccccccccccchhhh---cCCcEEEEechHhcCHHHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCcC
Confidence 22221110000 0000001111 23458999999655444445555555432 1345788887753
Q ss_pred H--H-H---------hhhcCcCeEeCCCCCH--HHHHHHH
Q 038751 318 T--V-A---------RMMESTDVISIKELSE--QECWSLF 343 (915)
Q Consensus 318 ~--v-~---------~~~~~~~~~~l~~L~~--~~~~~lf 343 (915)
. . . ..+. ...+.+.+|.+ ++...++
T Consensus 152 ~~~~~~~~~~~~~L~~Rl~-~~~i~lp~L~~R~~di~~l~ 190 (265)
T 2bjv_A 152 LPAMVNEGTFRADLLDALA-FDVVQLPPLRERESDIMLMA 190 (265)
T ss_dssp HHHHHHHTSSCHHHHHHHC-SEEEECCCGGGCHHHHHHHH
T ss_pred HHHHHHcCCccHHHHHhhc-CcEEeCCChhhhhHHHHHHH
Confidence 1 1 1 1111 23577888876 5554443
No 201
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.58 E-value=0.0017 Score=70.17 Aligned_cols=183 Identities=16% Similarity=0.075 Sum_probs=100.3
Q ss_pred cccCccccchHHHHHHHHHHhcc----cc---cccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCC
Q 038751 168 INVSDVRGRDEEKNILKRKLLCE----SN---EERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPF 240 (915)
Q Consensus 168 ~~~~~~~Gr~~~~~~l~~~L~~~----~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~ 240 (915)
+.-.++.|-++.+++|.+.+.-+ +- .+-...+-|.++|++|+|||.||+++++. ....| +.|..+.
T Consensus 145 v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e--~~~~f---~~v~~s~-- 217 (405)
T 4b4t_J 145 STYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHH--TDCKF---IRVSGAE-- 217 (405)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHH--HTCEE---EEEEGGG--
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHh--hCCCc---eEEEhHH--
Confidence 33457889998888887765431 10 01234566889999999999999999984 33332 3344332
Q ss_pred CHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHhccCeEEEEEeCCCCCC-----c---cC------hhhhHHhhhc--C
Q 038751 241 DEFRIAKAIIEGLEGSLPNLRELNSLLEYIHTSIKEKKFFLILDDVWPDD-----Y---SK------WEPFHNCLMN--G 304 (915)
Q Consensus 241 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~-----~---~~------~~~l~~~l~~--~ 304 (915)
+.....+ .....+...+...-...+.+|++|++..-- . .. ...+...+.. .
T Consensus 218 ------------l~sk~vG-ese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~ 284 (405)
T 4b4t_J 218 ------------LVQKYIG-EGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFET 284 (405)
T ss_dssp ------------GSCSSTT-HHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTC
T ss_pred ------------hhccccc-hHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCC
Confidence 1111111 111222222333334678999999985310 0 00 1122222322 2
Q ss_pred CCCceEEEEcCchHH-----HhhhcCcCeEeCCCCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCCCch
Q 038751 305 LCGSRILVTTRKETV-----ARMMESTDVISIKELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKGLPL 375 (915)
Q Consensus 305 ~~gs~iivTtR~~~v-----~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~PL 375 (915)
..+..||.||..+.. .+...-...+.+...+.++-.++|+.+.-...- ...-++ ..|++.+.|.-=
T Consensus 285 ~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l-~~dvdl----~~lA~~t~G~SG 355 (405)
T 4b4t_J 285 SKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNL-TRGINL----RKVAEKMNGCSG 355 (405)
T ss_dssp CCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBC-CSSCCH----HHHHHHCCSCCH
T ss_pred CCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCC-CccCCH----HHHHHHCCCCCH
Confidence 344456667765432 222233668999999999988999876533211 112233 446677877543
No 202
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.58 E-value=0.00063 Score=76.60 Aligned_cols=185 Identities=11% Similarity=0.082 Sum_probs=102.4
Q ss_pred CccccchHHHHHHHHHHhccccc-------ccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHH
Q 038751 171 SDVRGRDEEKNILKRKLLCESNE-------ERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEF 243 (915)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 243 (915)
.+++|.+..++++.+++...... +....+-|.|+|++|+|||++|+.+++. .... .+.++.+
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~--~~~~---fv~vn~~------ 272 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAF---FFLINGP------ 272 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHH--CSSE---EEEEEHH------
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHH--hCCC---EEEEEch------
Confidence 46899999999998887542000 0123456889999999999999999873 2222 2333321
Q ss_pred HHHHHHHHHhhCCCCCcccHHHHHHHHHHHhccCeEEEEEeCCCCCCc-----------cChhhhHHhhhcC--CCCceE
Q 038751 244 RIAKAIIEGLEGSLPNLRELNSLLEYIHTSIKEKKFFLILDDVWPDDY-----------SKWEPFHNCLMNG--LCGSRI 310 (915)
Q Consensus 244 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~-----------~~~~~l~~~l~~~--~~gs~i 310 (915)
.+. ....+ .....+...+.....+++.+|+||++..-.. .....+...+... ..+..|
T Consensus 273 ----~l~----~~~~g-~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~v 343 (489)
T 3hu3_A 273 ----EIM----SKLAG-ESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV 343 (489)
T ss_dssp ----HHH----TSCTT-HHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEE
T ss_pred ----Hhh----hhhcc-hhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEE
Confidence 111 11111 1122233344444456788999999831100 1123344444432 234456
Q ss_pred EEEcCchHH-Hhhh----cCcCeEeCCCCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCCC-chHHHHH
Q 038751 311 LVTTRKETV-ARMM----ESTDVISIKELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKGL-PLAAKTI 380 (915)
Q Consensus 311 ivTtR~~~v-~~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~-PLai~~~ 380 (915)
|.||..+.. ...+ .....+.+...+.++-.+++..++..... .....+ .++++.+.|. +-.+..+
T Consensus 344 IaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l-~~~~~l----~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL-ADDVDL----EQVANETHGHVGADLAAL 414 (489)
T ss_dssp EEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCB-CTTCCH----HHHHHTCTTCCHHHHHHH
T ss_pred EEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCC-cchhhH----HHHHHHccCCcHHHHHHH
Confidence 666665421 1111 22347899999999999999887643221 112223 3466667774 4444443
No 203
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.57 E-value=0.00089 Score=73.79 Aligned_cols=138 Identities=13% Similarity=0.121 Sum_probs=86.6
Q ss_pred CCcceEEEeeeCCCCC-CCcccCccCccEEEEcCcCCC----CCCC--CCCCCCCcceeeccccccceEeCccccCCccc
Q 038751 730 PDIKSLEIMVFKGRTP-SNWIGSLNKLKMLTLNSFVKC----EIMP--PLGKLPSLEILRIWHMRSVKRVGDEFLGMEIS 802 (915)
Q Consensus 730 ~~L~~L~l~~~~~~~~-p~~~~~l~~L~~L~L~~~~~~----~~l~--~l~~Lp~L~~L~L~~~~~l~~~~~~~~~~~~l 802 (915)
.+|+.+.+.+. ...+ +..+..+++|+.+.+.++... ..++ .+..+++|+.+.|.+ .++.++...+
T Consensus 248 ~~L~~i~lp~~-i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF----- 319 (401)
T 4fdw_A 248 SGITTVKLPNG-VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGLL----- 319 (401)
T ss_dssp CCCSEEEEETT-CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECTTTT-----
T ss_pred CCccEEEeCCC-ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhhhhh-----
Confidence 57888888432 3333 445668889999998765432 1233 367788999998873 4777765433
Q ss_pred ccccccccCCCcccccCcccceeeecCcccccccccCCCCcccCcccceeecccCccccCCC-cCCCCCC-CcCeEeEcC
Q 038751 803 DHIHIHGTSSSSSVIAFPKLQKLELTGMDELEEWDFGNDDITIMPHIKSLYITYCEKLKSLP-ELLLRST-TLESLTIFG 880 (915)
Q Consensus 803 ~~l~l~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~lp~L~~L~l~~c~~L~~lp-~~l~~l~-~L~~L~l~~ 880 (915)
.++++|+.+.+.+ ++..+. ...+..+ +|+.|.+.++ .+..++ ..+..++ +++.|.+-.
T Consensus 320 --------------~~c~~L~~l~lp~--~l~~I~--~~aF~~~-~L~~l~l~~n-~~~~l~~~~F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 320 --------------GGNRKVTQLTIPA--NVTQIN--FSAFNNT-GIKEVKVEGT-TPPQVFEKVWYGFPDDITVIRVPA 379 (401)
T ss_dssp --------------TTCCSCCEEEECT--TCCEEC--TTSSSSS-CCCEEEECCS-SCCBCCCSSCCCSCTTCCEEEECG
T ss_pred --------------cCCCCccEEEECc--cccEEc--HHhCCCC-CCCEEEEcCC-CCcccccccccCCCCCccEEEeCH
Confidence 3677888888854 344443 2335567 8999999877 455555 3455564 688888864
Q ss_pred CcchhHhhccCCCCCcccc
Q 038751 881 VPIVQESFKRRTEKDWSKI 899 (915)
Q Consensus 881 c~~l~~~~~~~~~~~~~~i 899 (915)
. ..+.++.. ..|...
T Consensus 380 ~--~~~~y~~a--~~W~~f 394 (401)
T 4fdw_A 380 E--SVEKYKNA--NGWRDF 394 (401)
T ss_dssp G--GHHHHHHS--TTGGGG
T ss_pred H--HHHHhhhc--cchhhh
Confidence 3 23444432 346554
No 204
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.54 E-value=0.00084 Score=71.30 Aligned_cols=153 Identities=12% Similarity=0.084 Sum_probs=84.1
Q ss_pred CccccchHHHHHHHHHHhcccc--------cccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCC-
Q 038751 171 SDVRGRDEEKNILKRKLLCESN--------EERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFD- 241 (915)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~--------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~- 241 (915)
..++|.+..++.+...+...-. ........+.++|++|+|||++|+.+.+. ... ..+.++.+...+
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~--l~~---~~~~i~~~~~~~~ 89 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL--ANA---PFIKVEATKFTEV 89 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHH--HTC---CEEEEEGGGGSSC
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHH--hCC---CEEEEcchhcccC
Confidence 4589999999999888754100 00112356789999999999999999873 222 233444433211
Q ss_pred ------HHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHhccCeEEEEEeCCCCCCccC------------hhhhHHhhhc
Q 038751 242 ------EFRIAKAIIEGLEGSLPNLRELNSLLEYIHTSIKEKKFFLILDDVWPDDYSK------------WEPFHNCLMN 303 (915)
Q Consensus 242 ------~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~------------~~~l~~~l~~ 303 (915)
....+..+..... + .+.. .+.+.+|++|++....... .+.+...+..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~----~---------~~~~--~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~ 154 (310)
T 1ofh_A 90 GYVGKEVDSIIRDLTDSAG----G---------AIDA--VEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEG 154 (310)
T ss_dssp CSGGGSTTHHHHHHHHTTT----T---------CHHH--HHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHC
T ss_pred CccCccHHHHHHHHHHHhh----H---------HHhh--ccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcC
Confidence 1111222211110 0 0111 1236799999996433332 4445554443
Q ss_pred C----------CCCceEEEEcC----ch-----HHHhhhcCcCeEeCCCCCHHHHHHHHHH
Q 038751 304 G----------LCGSRILVTTR----KE-----TVARMMESTDVISIKELSEQECWSLFKR 345 (915)
Q Consensus 304 ~----------~~gs~iivTtR----~~-----~v~~~~~~~~~~~l~~L~~~~~~~lf~~ 345 (915)
. ..+..+|.|+. .+ .+...+ ...+.+.+++.++..+++.+
T Consensus 155 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~R~--~~~i~~~~~~~~~~~~il~~ 213 (310)
T 1ofh_A 155 STVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRL--PIRVELTALSAADFERILTE 213 (310)
T ss_dssp CEEEETTEEEECTTCEEEEEECCSSSCGGGSCHHHHHTC--CEEEECCCCCHHHHHHHHHS
T ss_pred CeEecccccccCCcEEEEEcCCcccCCcccCCHHHHhhC--CceEEcCCcCHHHHHHHHHh
Confidence 2 12445565541 21 121111 24699999999999998875
No 205
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.54 E-value=0.00075 Score=72.49 Aligned_cols=178 Identities=18% Similarity=0.207 Sum_probs=93.7
Q ss_pred CccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 038751 171 SDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAII 250 (915)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 250 (915)
..++|.+..++.+...+..... .......+.++|++|+||||||+.+++. ....|. ... +....
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~-~~~~~~~~ll~Gp~G~GKTTLa~~ia~~--l~~~~~---~~s-g~~~~--------- 88 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKM-RGEVLDHVLLAGPPGLGKTTLAHIIASE--LQTNIH---VTS-GPVLV--------- 88 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHH-HTCCCCCEEEESSTTSSHHHHHHHHHHH--HTCCEE---EEE-TTTCC---------
T ss_pred HHccCcHHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCCEE---EEe-chHhc---------
Confidence 4578988777777666643211 1123467899999999999999999883 222211 111 11100
Q ss_pred HHhhCCCCCcccHHHHHHHHHHHhccCeEEEEEeCCCCCCccChhhhHHhhhcCC------------------CCceEE-
Q 038751 251 EGLEGSLPNLRELNSLLEYIHTSIKEKKFFLILDDVWPDDYSKWEPFHNCLMNGL------------------CGSRIL- 311 (915)
Q Consensus 251 ~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~------------------~gs~ii- 311 (915)
....+...+ ..+ .++-++++|++..-.....+.+...+.... ....++
T Consensus 89 -----------~~~~l~~~~-~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~ 155 (334)
T 1in4_A 89 -----------KQGDMAAIL-TSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG 155 (334)
T ss_dssp -----------SHHHHHHHH-HHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEE
T ss_pred -----------CHHHHHHHH-HHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE
Confidence 011111111 112 234467788874332222333332222111 011222
Q ss_pred EEcCchHHHhhhc-C-cCeEeCCCCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCCCchHHHHHH
Q 038751 312 VTTRKETVARMME-S-TDVISIKELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKGLPLAAKTIG 381 (915)
Q Consensus 312 vTtR~~~v~~~~~-~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~PLai~~~~ 381 (915)
.|++...+...+. . .....+++.+.++..+++.+.+........ .+.+..|++++.|.|..+..+.
T Consensus 156 at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~----~~~~~~ia~~~~G~~R~a~~ll 223 (334)
T 1in4_A 156 ATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIE----DAAAEMIAKRSRGTPRIAIRLT 223 (334)
T ss_dssp EESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCBC----HHHHHHHHHTSTTCHHHHHHHH
T ss_pred ecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCCcC----HHHHHHHHHhcCCChHHHHHHH
Confidence 2444332221111 1 235889999999999999887632221111 2457789999999997665443
No 206
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.53 E-value=9.2e-05 Score=69.07 Aligned_cols=86 Identities=15% Similarity=0.047 Sum_probs=49.8
Q ss_pred EEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHhccCe
Q 038751 199 QIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLRELNSLLEYIHTSIKEKK 278 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 278 (915)
..+.|+|+.|+|||||++.+++..... .+ ..+++....-... .+..+.
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~~~~-g~-~~~~~~~~~~~~~------------------------------~~~~~~ 84 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQALEA-GK-NAAYIDAASMPLT------------------------------DAAFEA 84 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHHHTT-TC-CEEEEETTTSCCC------------------------------GGGGGC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhc-CC-cEEEEcHHHhhHH------------------------------HHHhCC
Confidence 578999999999999999998843221 11 2556655432211 112345
Q ss_pred EEEEEeCCCCCCccChhhhHHhhhcC-CCCc-eEEEEcCc
Q 038751 279 FFLILDDVWPDDYSKWEPFHNCLMNG-LCGS-RILVTTRK 316 (915)
Q Consensus 279 ~LlVlDdvw~~~~~~~~~l~~~l~~~-~~gs-~iivTtR~ 316 (915)
-+||+||+.......-+.+...+... ..|. +||+||+.
T Consensus 85 ~lLilDE~~~~~~~~~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 85 EYLAVDQVEKLGNEEQALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp SEEEEESTTCCCSHHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred CEEEEeCccccChHHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence 68899999543322222333333321 2233 48888874
No 207
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.48 E-value=0.0011 Score=72.74 Aligned_cols=182 Identities=16% Similarity=0.153 Sum_probs=93.6
Q ss_pred cccCccccchHHHHHHHHHHhcccc-------cccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCC
Q 038751 168 INVSDVRGRDEEKNILKRKLLCESN-------EERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPF 240 (915)
Q Consensus 168 ~~~~~~~Gr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~ 240 (915)
+.-.++.|-++.+++|.+.+.-.-. -+-...+-|.++|++|+|||+||+++++. ...+| +.|..+.
T Consensus 169 v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~--~~~~~---~~v~~~~-- 241 (428)
T 4b4t_K 169 VTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANS--TKAAF---IRVNGSE-- 241 (428)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHH--HTCEE---EEEEGGG--
T ss_pred CCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHH--hCCCe---EEEecch--
Confidence 3445789999988888776643210 02234567899999999999999999984 33222 3344332
Q ss_pred CHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHhccCeEEEEEeCCCC------CCc---c-----ChhhhHHhhhc--C
Q 038751 241 DEFRIAKAIIEGLEGSLPNLRELNSLLEYIHTSIKEKKFFLILDDVWP------DDY---S-----KWEPFHNCLMN--G 304 (915)
Q Consensus 241 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~------~~~---~-----~~~~l~~~l~~--~ 304 (915)
+.....+ .....+...+...-...+.++++|++.. ... . ....+...+.. .
T Consensus 242 ------------l~~~~~G-e~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~ 308 (428)
T 4b4t_K 242 ------------FVHKYLG-EGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQ 308 (428)
T ss_dssp ------------TCCSSCS-HHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCS
T ss_pred ------------hhccccc-hhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCC
Confidence 1111111 1112222233333346789999999831 000 0 11223333332 2
Q ss_pred CCCceEEEEcCchH-----HHhhhcCcCeEeCCCCCH-HHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCCCc
Q 038751 305 LCGSRILVTTRKET-----VARMMESTDVISIKELSE-QECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKGLP 374 (915)
Q Consensus 305 ~~gs~iivTtR~~~-----v~~~~~~~~~~~l~~L~~-~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~P 374 (915)
..+..||.||..+. +.+...-...+.+..+++ ++-..+|..+.-... ....-++ ..+++.+.|.-
T Consensus 309 ~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~-l~~~~dl----~~lA~~t~G~s 379 (428)
T 4b4t_K 309 STNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMS-LAPEADL----DSLIIRNDSLS 379 (428)
T ss_dssp SCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSC-BCTTCCH----HHHHHHTTTCC
T ss_pred CCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCC-CCcccCH----HHHHHHCCCCC
Confidence 34556666776543 211111234677866654 444556655543211 1111233 34666677753
No 208
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.45 E-value=0.00026 Score=74.80 Aligned_cols=158 Identities=12% Similarity=0.055 Sum_probs=83.3
Q ss_pred CccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccc-cccCCCeEEEEEeCCCCCHHHHHHHH
Q 038751 171 SDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKD-VIENFDKRIWVCVSDPFDEFRIAKAI 249 (915)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~F~~~~wv~vs~~~~~~~~~~~i 249 (915)
..++|+...++++.+.+..... ...-|.|+|.+|+|||++|+.+.+... ....| +.++++.- ...++..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~----~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~---v~v~~~~~--~~~l~~~- 71 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAP----SDATVLIHGDSGTGKELVARALHACSARSDRPL---VTLNCAAL--NESLLES- 71 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCS----TTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCC---CEEECSSC--CHHHHHH-
T ss_pred CCcEECCHHHHHHHHHHHHHhC----CCCcEEEECCCCchHHHHHHHHHHhCcccCCCe---EEEeCCCC--ChHHHHH-
Confidence 3589999999999888865432 223477999999999999999987321 11222 33444432 1222222
Q ss_pred HHHhhCCCCCccc--HHHHHHHHHHHhccCeEEEEEeCCCCCCccChhhhHHhhhcCC-----------CCceEEEEcCc
Q 038751 250 IEGLEGSLPNLRE--LNSLLEYIHTSIKEKKFFLILDDVWPDDYSKWEPFHNCLMNGL-----------CGSRILVTTRK 316 (915)
Q Consensus 250 ~~~l~~~~~~~~~--~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iivTtR~ 316 (915)
.+.+...+.-. .......+... ..-.|+||++..-.......+...+.... ...+||.||..
T Consensus 72 --~lfg~~~g~~tg~~~~~~g~~~~a---~~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~ 146 (304)
T 1ojl_A 72 --ELFGHEKGAFTGADKRREGRFVEA---DGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHR 146 (304)
T ss_dssp --HHTCCCSSCCC---CCCCCHHHHH---TTSEEEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESS
T ss_pred --HhcCccccccCchhhhhcCHHHhc---CCCEEEEeccccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCc
Confidence 22221111000 00000111111 22478999996654444455655555431 34678887775
Q ss_pred hH---HHh---------hhcCcCeEeCCCCC--HHHHHHHHH
Q 038751 317 ET---VAR---------MMESTDVISIKELS--EQECWSLFK 344 (915)
Q Consensus 317 ~~---v~~---------~~~~~~~~~l~~L~--~~~~~~lf~ 344 (915)
.- +.. .+. ...+.+.+|. .+|...++.
T Consensus 147 ~l~~~v~~g~fr~~L~~Rl~-~~~i~lPpL~eR~edi~~l~~ 187 (304)
T 1ojl_A 147 DLAEEVSAGRFRQDLYYRLN-VVAIEMPSLRQRREDIPLLAD 187 (304)
T ss_dssp CHHHHHHHTSSCHHHHHHHS-SEEEECCCSGGGGGGHHHHHH
T ss_pred cHHHHHHhCCcHHHHHhhcC-eeEEeccCHHHhHhhHHHHHH
Confidence 31 111 111 3357788888 455555443
No 209
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.41 E-value=0.00061 Score=82.04 Aligned_cols=156 Identities=15% Similarity=0.244 Sum_probs=90.3
Q ss_pred CccccchHHHHHHHHHHhccccc---ccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHH
Q 038751 171 SDVRGRDEEKNILKRKLLCESNE---ERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAK 247 (915)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 247 (915)
..++|.+..++.+...+.....+ .......+.++|++|+|||++|+.+.+. ....-...+.++.+.-.+
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~--l~~~~~~~i~i~~s~~~~------ 562 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES--IFGDEESMIRIDMSEYME------ 562 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHH--HHSCTTCEEEEEGGGGCS------
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH--hcCCCcceEEEechhccc------
Confidence 46899999998888888653211 1223347999999999999999999873 212122344555543111
Q ss_pred HHHHHhhCCCCCcccHHHHHHHHHHHhccCeEEEEEeCCCCCCccChhhhHHhhhcCC-----------CCceEEEEcCc
Q 038751 248 AIIEGLEGSLPNLRELNSLLEYIHTSIKEKKFFLILDDVWPDDYSKWEPFHNCLMNGL-----------CGSRILVTTRK 316 (915)
Q Consensus 248 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iivTtR~ 316 (915)
.... ....+...+++ ...-+|+||++........+.+...+..+. ...+||+||..
T Consensus 563 --------~~~~--~~~~l~~~~~~---~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~ 629 (758)
T 3pxi_A 563 --------KHST--SGGQLTEKVRR---KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNV 629 (758)
T ss_dssp --------SCCC--C---CHHHHHH---CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESS
T ss_pred --------cccc--ccchhhHHHHh---CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCC
Confidence 0000 01111122211 233489999997665566666766666531 35688888873
Q ss_pred -----hH----HHhhh-----cC-cCeEeCCCCCHHHHHHHHHHhH
Q 038751 317 -----ET----VARMM-----ES-TDVISIKELSEQECWSLFKRFA 347 (915)
Q Consensus 317 -----~~----v~~~~-----~~-~~~~~l~~L~~~~~~~lf~~~~ 347 (915)
.. +...+ .. ...+.+.+++.++...++....
T Consensus 630 ~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 630 GASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp STTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHH
Confidence 11 11111 11 3588899999998888876643
No 210
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.40 E-value=0.0024 Score=70.10 Aligned_cols=181 Identities=15% Similarity=0.150 Sum_probs=98.8
Q ss_pred ccCccccchHHHHHHHHHHhcccc-------cccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCC
Q 038751 169 NVSDVRGRDEEKNILKRKLLCESN-------EERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFD 241 (915)
Q Consensus 169 ~~~~~~Gr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 241 (915)
.-.++.|-++.+++|.+.+.-+-. .+-...+-|.++|++|+|||+||+++++. ....| +.|..+.
T Consensus 179 ~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e--~~~~~---~~v~~s~--- 250 (437)
T 4b4t_L 179 TFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAAT--IGANF---IFSPASG--- 250 (437)
T ss_dssp CSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH--HTCEE---EEEEGGG---
T ss_pred ChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEehhh---
Confidence 345688998888888776643110 02234577899999999999999999984 33222 3344332
Q ss_pred HHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHhccCeEEEEEeCCCCC------CccC--------hhhhHHhhhc--CC
Q 038751 242 EFRIAKAIIEGLEGSLPNLRELNSLLEYIHTSIKEKKFFLILDDVWPD------DYSK--------WEPFHNCLMN--GL 305 (915)
Q Consensus 242 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~------~~~~--------~~~l~~~l~~--~~ 305 (915)
+.....+ .....+...+...-...+.+|++|++..- .... ...+...+.. ..
T Consensus 251 -----------l~sk~~G-ese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~ 318 (437)
T 4b4t_L 251 -----------IVDKYIG-ESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNL 318 (437)
T ss_dssp -----------TCCSSSS-HHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCT
T ss_pred -----------hccccch-HHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCC
Confidence 1111111 11111222222333467899999998531 0001 1122333322 23
Q ss_pred CCceEEEEcCchHHHhh--hc---CcCeEeCCCCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCCCc
Q 038751 306 CGSRILVTTRKETVARM--ME---STDVISIKELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKGLP 374 (915)
Q Consensus 306 ~gs~iivTtR~~~v~~~--~~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~P 374 (915)
.+..||.||..+..... .. -...+.+...+.++-.++|+.+.-.... ...-++ ..|++.+.|.-
T Consensus 319 ~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~-~~d~dl----~~lA~~t~G~s 387 (437)
T 4b4t_L 319 GQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKK-TGEFDF----EAAVKMSDGFN 387 (437)
T ss_dssp TSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCB-CSCCCH----HHHHHTCCSCC
T ss_pred CCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCC-CcccCH----HHHHHhCCCCC
Confidence 45567777765543221 11 2457888888888888888766543221 111223 44677787754
No 211
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.38 E-value=0.0021 Score=66.12 Aligned_cols=187 Identities=14% Similarity=0.088 Sum_probs=94.4
Q ss_pred ccCccccchHHHHHHHHHHhc---cccc---ccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCH
Q 038751 169 NVSDVRGRDEEKNILKRKLLC---ESNE---ERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDE 242 (915)
Q Consensus 169 ~~~~~~Gr~~~~~~l~~~L~~---~~~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 242 (915)
.-.+++|.+..++++.+.+.. .... +....+-+.|+|++|+||||+|+.+++. ....| +.++.+.-.
T Consensus 10 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~--~~~~~---~~i~~~~~~-- 82 (257)
T 1lv7_A 10 TFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE--AKVPF---FTISGSDFV-- 82 (257)
T ss_dssp CGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHH--HTCCE---EEECSCSST--
T ss_pred CHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHH--cCCCE---EEEeHHHHH--
Confidence 345789998877776655432 1100 0112334889999999999999999873 22222 333322210
Q ss_pred HHHHHHHHHHhhCCCCCcccHHHHHHHHHHHhccCeEEEEEeCCCCCCc--------------cChhhhHHhhhc--CCC
Q 038751 243 FRIAKAIIEGLEGSLPNLRELNSLLEYIHTSIKEKKFFLILDDVWPDDY--------------SKWEPFHNCLMN--GLC 306 (915)
Q Consensus 243 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~--------------~~~~~l~~~l~~--~~~ 306 (915)
....+ .....+...+.......+.++++|++..-.. .....+...+.. ...
T Consensus 83 ------------~~~~~-~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 149 (257)
T 1lv7_A 83 ------------EMFVG-VGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNE 149 (257)
T ss_dssp ------------TSCCC-CCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSS
T ss_pred ------------HHhhh-hhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCC
Confidence 00011 1122233333344345678999999832100 011122222222 233
Q ss_pred CceEEEEcCchH-HHhhh-c---CcCeEeCCCCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCC-CchHHHHH
Q 038751 307 GSRILVTTRKET-VARMM-E---STDVISIKELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKG-LPLAAKTI 380 (915)
Q Consensus 307 gs~iivTtR~~~-v~~~~-~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G-~PLai~~~ 380 (915)
+..||.||..+. +.... . ....+.+...+.++-.+++....-... ...... ...++..+.| .+--+..+
T Consensus 150 ~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~-l~~~~~----~~~la~~~~G~~~~dl~~l 224 (257)
T 1lv7_A 150 GIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVP-LAPDID----AAIIARGTPGFSGADLANL 224 (257)
T ss_dssp CEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC-BCTTCC----HHHHHHTCTTCCHHHHHHH
T ss_pred CEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCC-CCcccc----HHHHHHHcCCCCHHHHHHH
Confidence 456666776543 21111 1 134678888888888888876653211 111111 2346677777 66544433
No 212
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.36 E-value=0.0008 Score=81.13 Aligned_cols=157 Identities=17% Similarity=0.146 Sum_probs=86.0
Q ss_pred CccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccc----cCCCeEEEE-EeCCCCCHHHH
Q 038751 171 SDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVI----ENFDKRIWV-CVSDPFDEFRI 245 (915)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv-~vs~~~~~~~~ 245 (915)
..++||+.+++++.+.|... ...-+.|+|++|+||||+|+.+++...-. ..+...+|. ..+. +
T Consensus 186 d~~iGr~~~i~~l~~~l~~~------~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~------l 253 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRR------RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGS------L 253 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC--------
T ss_pred CCccCCHHHHHHHHHHHhcc------CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHH------H
Confidence 46899999999999999654 23446899999999999999988732110 012333321 1111 0
Q ss_pred HHHHHHHhhCCCCCcccHHHHHHHHHHHh-ccCeEEEEEeCCCCCCc-----cChhhhHHhhhc--CCCCceEEEEcCch
Q 038751 246 AKAIIEGLEGSLPNLRELNSLLEYIHTSI-KEKKFFLILDDVWPDDY-----SKWEPFHNCLMN--GLCGSRILVTTRKE 317 (915)
Q Consensus 246 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdvw~~~~-----~~~~~l~~~l~~--~~~gs~iivTtR~~ 317 (915)
+.+.. ...+.+.....+.+.+ ..++.+|++||+..-.. ..-......+.. ...+..+|.+|..+
T Consensus 254 -------~~~~~-~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~~~~~~I~at~~~ 325 (758)
T 1r6b_X 254 -------LAGTK-YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQ 325 (758)
T ss_dssp --------CCCC-CSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSSCCCEEEEEECHH
T ss_pred -------hcccc-ccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhCCCeEEEEEeCch
Confidence 01111 1112232233333333 34578999999953210 001112222222 12345666776655
Q ss_pred HHHhhh-------cCcCeEeCCCCCHHHHHHHHHHhH
Q 038751 318 TVARMM-------ESTDVISIKELSEQECWSLFKRFA 347 (915)
Q Consensus 318 ~v~~~~-------~~~~~~~l~~L~~~~~~~lf~~~~ 347 (915)
...... .....+.+.+.+.++..+++....
T Consensus 326 ~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 326 EFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp HHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred HHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 432111 112368999999999988887643
No 213
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.33 E-value=0.0038 Score=68.32 Aligned_cols=180 Identities=16% Similarity=0.093 Sum_probs=97.5
Q ss_pred cCccccchHHHHHHHHHHhc----ccc---cccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCH
Q 038751 170 VSDVRGRDEEKNILKRKLLC----ESN---EERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDE 242 (915)
Q Consensus 170 ~~~~~Gr~~~~~~l~~~L~~----~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 242 (915)
-.++.|-++.+++|.+.+.- ++- -+-...+-|.++|++|+|||+||+++++. ....| +.|..+.
T Consensus 208 ~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e--~~~~f---i~vs~s~---- 278 (467)
T 4b4t_H 208 YSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANR--TDATF---IRVIGSE---- 278 (467)
T ss_dssp CSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHH--HTCEE---EEEEGGG----
T ss_pred HHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhc--cCCCe---EEEEhHH----
Confidence 35689999888888776432 110 01235677889999999999999999984 33332 3343332
Q ss_pred HHHHHHHHHHhhCCCCCcccHHHHHHHHHHHhccCeEEEEEeCCCCCC------ccC--------hhhhHHhhhcC--CC
Q 038751 243 FRIAKAIIEGLEGSLPNLRELNSLLEYIHTSIKEKKFFLILDDVWPDD------YSK--------WEPFHNCLMNG--LC 306 (915)
Q Consensus 243 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~------~~~--------~~~l~~~l~~~--~~ 306 (915)
+.....+ .....+...+...-...+++|++|++...- ... ...+...+... ..
T Consensus 279 ----------L~sk~vG-esek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 347 (467)
T 4b4t_H 279 ----------LVQKYVG-EGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRG 347 (467)
T ss_dssp ----------GCCCSSS-HHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTT
T ss_pred ----------hhcccCC-HHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCC
Confidence 1111111 111122222333334678999999985310 000 11122222222 23
Q ss_pred CceEEEEcCchHH-----HhhhcCcCeEeCCCCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCCCc
Q 038751 307 GSRILVTTRKETV-----ARMMESTDVISIKELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKGLP 374 (915)
Q Consensus 307 gs~iivTtR~~~v-----~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~P 374 (915)
+..||.||..+.. .+...-...+.+...+.++-.++|+.+.-.-.- ...-++ ..|++.|.|.-
T Consensus 348 ~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l-~~dvdl----~~LA~~T~GfS 415 (467)
T 4b4t_H 348 NIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSV-ERGIRW----ELISRLCPNST 415 (467)
T ss_dssp TEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCB-CSSCCH----HHHHHHCCSCC
T ss_pred cEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCC-CCCCCH----HHHHHHCCCCC
Confidence 4455666654432 111123568888888988888898876533211 111223 44667787754
No 214
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.33 E-value=0.00018 Score=78.08 Aligned_cols=93 Identities=18% Similarity=0.068 Sum_probs=68.5
Q ss_pred EEEEcc-ccccCccccCCCCceeEEEecc-CCCCceeccccch-hccccCCcceeeecCCCCCccccccccCCCcCCCcc
Q 038751 538 LMLVLG-FWAKFPFSIFDAKTLHSLILVY-SSNNQVAASPVLQ-GLFDQLTCLRALKIEDLPPTIKIPKGLENLIHLRYL 614 (915)
Q Consensus 538 Lsl~~~-~~~~~~~~~~~~~~Lr~L~l~~-~~~~lrv~~~~lp-~~i~~L~~Lr~L~l~~~~~~~~lP~~i~~L~~Lr~L 614 (915)
++..++ .+..+|. +..+++|+.|.+++ | .+..+| ..|++|.+|++|+|++|......|..+.+|.+|++|
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n------~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L 85 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQ------HLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL 85 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCS------SCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEE
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCC------CCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEE
Confidence 455555 6666777 88889999999986 6 455566 678999999999999988874445567899999999
Q ss_pred c-----CcccCCcCCCCCCCCccCceee
Q 038751 615 K-----LSMVPNGIERLTSLRTLSEFAV 637 (915)
Q Consensus 615 ~-----l~~lP~~i~~L~~L~~L~~~~~ 637 (915)
+ |+.+|.++....+|+.|++..+
T Consensus 86 ~l~~N~l~~~~~~~~~~~~L~~l~l~~N 113 (347)
T 2ifg_A 86 NLSFNALESLSWKTVQGLSLQELVLSGN 113 (347)
T ss_dssp ECCSSCCSCCCSTTTCSCCCCEEECCSS
T ss_pred eCCCCccceeCHHHcccCCceEEEeeCC
Confidence 8 4567766544444777766543
No 215
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.23 E-value=0.0014 Score=78.88 Aligned_cols=149 Identities=15% Similarity=0.128 Sum_probs=79.7
Q ss_pred CccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccc---cccCCCeEEEEEeCCCCCHHHHHH
Q 038751 171 SDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKD---VIENFDKRIWVCVSDPFDEFRIAK 247 (915)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~---~~~~F~~~~wv~vs~~~~~~~~~~ 247 (915)
..++||+.+++++...|.... ..-+.++|++|+|||++|+.+.+... +-......-++.+.-
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~------~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~--------- 244 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRT------KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM--------- 244 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS------SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------
T ss_pred CCccCchHHHHHHHHHHhCCC------CCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc---------
Confidence 469999999999999996532 23468999999999999999887310 000001111111111
Q ss_pred HHHHHhhCCCCCcccHHHHHHHHHHHhccCeEEEEEeCCCCCCccChhhhHHhhhcCCCCceEEEEcCchHHHh------
Q 038751 248 AIIEGLEGSLPNLRELNSLLEYIHTSIKEKKFFLILDDVWPDDYSKWEPFHNCLMNGLCGSRILVTTRKETVAR------ 321 (915)
Q Consensus 248 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~------ 321 (915)
+....+ .-...+...+......++.+|++|.- ....+.+...+. ....++|.||.......
T Consensus 245 ------g~~~~G-~~e~~l~~~~~~~~~~~~~iLfiD~~----~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d~ 311 (758)
T 3pxi_A 245 ------GTKYRG-EFEDRLKKVMDEIRQAGNIILFIDAA----IDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDA 311 (758)
T ss_dssp ---------------CTTHHHHHHHHHTCCCCEEEECC------------CCCTT--SSSCEEEEECCTTTTHHHHTTCS
T ss_pred ------cccccc-hHHHHHHHHHHHHHhcCCEEEEEcCc----hhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhccH
Confidence 000000 00011222333333467789999921 122222333333 22356666666444111
Q ss_pred -hhcCcCeEeCCCCCHHHHHHHHHHhH
Q 038751 322 -MMESTDVISIKELSEQECWSLFKRFA 347 (915)
Q Consensus 322 -~~~~~~~~~l~~L~~~~~~~lf~~~~ 347 (915)
.......+.+++.+.++..+++....
T Consensus 312 al~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 312 ALERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp HHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred HHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 11123579999999999999998654
No 216
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.23 E-value=3.9e-05 Score=83.19 Aligned_cols=167 Identities=19% Similarity=0.097 Sum_probs=94.8
Q ss_pred HhhcCCCCCcceEEEeeeCCC----------CCCCcccCccCccEEEEcCcCCCCCCCCCCCCCCcceeeccccccceEe
Q 038751 723 CEALRPPPDIKSLEIMVFKGR----------TPSNWIGSLNKLKMLTLNSFVKCEIMPPLGKLPSLEILRIWHMRSVKRV 792 (915)
Q Consensus 723 ~~~l~~~~~L~~L~l~~~~~~----------~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~Lp~L~~L~L~~~~~l~~~ 792 (915)
.++...+++|+.|.|.+.... .++.++..+|+|+.|.|++|... .++.+ .+++|++|.|..|. +
T Consensus 132 ~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~~-~~~~L~~L~L~~~~-l--- 205 (362)
T 2ra8_A 132 VENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGKK-PRPNLKSLEIISGG-L--- 205 (362)
T ss_dssp HTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCSC-BCTTCSEEEEECSB-C---
T ss_pred HHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eeccc-cCCCCcEEEEecCC-C---
Confidence 334445679999999664321 12333457899999999887433 34444 48999999998765 2
Q ss_pred CccccCCcccccccccccCCCcccccCcccceeeecCcccc-------cccc-cCCCCcccCcccceeecccCccccCCC
Q 038751 793 GDEFLGMEISDHIHIHGTSSSSSVIAFPKLQKLELTGMDEL-------EEWD-FGNDDITIMPHIKSLYITYCEKLKSLP 864 (915)
Q Consensus 793 ~~~~~~~~~l~~l~l~~~~~~~~~~~f~~L~~L~l~~~~~l-------~~~~-~~~~~~~~lp~L~~L~l~~c~~L~~lp 864 (915)
+...... + ....+|+|+.|+|+...+. ..+. ... ...||+|+.|.+.+|......+
T Consensus 206 ~~~~l~~-----l---------~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~--~~~~p~Lr~L~L~~~~i~~~~~ 269 (362)
T 2ra8_A 206 PDSVVED-----I---------LGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFS--KDRFPNLKWLGIVDAEEQNVVV 269 (362)
T ss_dssp CHHHHHH-----H---------HHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSC--TTTCTTCCEEEEESCTTHHHHH
T ss_pred ChHHHHH-----H---------HHccCCCCcEEEEeccccccccchhHHHHHHHHh--cCCCCCcCEEeCCCCCCchHHH
Confidence 2111100 0 0126899999998632211 1111 001 1268999999999985432222
Q ss_pred cC---CCCCCCcCeEeEcCCcchhHhhccCCCCCcccccCCCcceeccccc
Q 038751 865 EL---LLRSTTLESLTIFGVPIVQESFKRRTEKDWSKISHIPNIKIQNIVF 912 (915)
Q Consensus 865 ~~---l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~ip~v~~~~~~~ 912 (915)
.. ...+++|++|+++.|. +...-.....+......++-.+.+.+|.+
T Consensus 270 ~~la~a~~~~~L~~LdLs~n~-L~d~G~~~L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 270 EMFLESDILPQLETMDISAGV-LTDEGARLLLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp HHHHHCSSGGGCSEEECCSSC-CBHHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred HHHHhCccCCCCCEEECCCCC-CChHHHHHHHhhcccCCcceEEECCCCcC
Confidence 11 1247899999998764 32211000001123456666666666543
No 217
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.23 E-value=0.0013 Score=72.14 Aligned_cols=180 Identities=16% Similarity=0.104 Sum_probs=96.3
Q ss_pred ccCccccchHHHHHHHHHHhc----ccc---cccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCC
Q 038751 169 NVSDVRGRDEEKNILKRKLLC----ESN---EERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFD 241 (915)
Q Consensus 169 ~~~~~~Gr~~~~~~l~~~L~~----~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 241 (915)
.-.++.|-++.+++|.+.+.- ++- .+-...+-|.++|++|+|||+||+++++. .... .+.++.+.
T Consensus 179 t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e--~~~~---f~~v~~s~--- 250 (434)
T 4b4t_M 179 TYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQ--TNAT---FLKLAAPQ--- 250 (434)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH--HTCE---EEEEEGGG---
T ss_pred ChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHH--hCCC---EEEEehhh---
Confidence 345789999988888876432 110 02234677899999999999999999984 3222 23333332
Q ss_pred HHHHHHHHHHHhhCCCCCcccHHHHHHHH-HHHhccCeEEEEEeCCCC------C-CccC-------hhhhHHhhhc--C
Q 038751 242 EFRIAKAIIEGLEGSLPNLRELNSLLEYI-HTSIKEKKFFLILDDVWP------D-DYSK-------WEPFHNCLMN--G 304 (915)
Q Consensus 242 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l-~~~l~~k~~LlVlDdvw~------~-~~~~-------~~~l~~~l~~--~ 304 (915)
+.....+ +.+.....+ ...-...+++|++|++.. . .... ...+...+.. .
T Consensus 251 -----------l~~~~vG--ese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~ 317 (434)
T 4b4t_M 251 -----------LVQMYIG--EGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSS 317 (434)
T ss_dssp -----------GCSSCSS--HHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCS
T ss_pred -----------hhhcccc--hHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCC
Confidence 1111111 112222222 222345789999999831 0 0000 1112222322 1
Q ss_pred CCCceEEEEcCchHHHhh-h----cCcCeEeCCCCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCCCc
Q 038751 305 LCGSRILVTTRKETVARM-M----ESTDVISIKELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKGLP 374 (915)
Q Consensus 305 ~~gs~iivTtR~~~v~~~-~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~P 374 (915)
..+..||.||..+..... + .-...+.+...+.++-.++|+.+.-.-.. ...-++ ..|++.+.|.-
T Consensus 318 ~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~-~~dvdl----~~lA~~t~G~s 387 (434)
T 4b4t_M 318 DDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTT-DDDINW----QELARSTDEFN 387 (434)
T ss_dssp SCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCB-CSCCCH----HHHHHHCSSCC
T ss_pred CCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCC-CCcCCH----HHHHHhCCCCC
Confidence 234456667765543221 1 12457888888888888888765432111 111123 44666777753
No 218
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.18 E-value=0.0065 Score=67.78 Aligned_cols=180 Identities=14% Similarity=0.113 Sum_probs=96.4
Q ss_pred cCccccchHHHHHHHHHHhccccc------ccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHH
Q 038751 170 VSDVRGRDEEKNILKRKLLCESNE------ERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEF 243 (915)
Q Consensus 170 ~~~~~Gr~~~~~~l~~~L~~~~~~------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 243 (915)
-.+++|.++.++++.+.+..-... +....+-|.|+|++|+|||+||+.+++. .... .+.++.+.-..
T Consensus 15 f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~--~~~~---f~~is~~~~~~-- 87 (476)
T 2ce7_A 15 FKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGE--ANVP---FFHISGSDFVE-- 87 (476)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHH--HTCC---EEEEEGGGTTT--
T ss_pred HHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--cCCC---eeeCCHHHHHH--
Confidence 356899988777766654321100 0111234789999999999999999883 2222 23344332111
Q ss_pred HHHHHHHHHhhCCCCCcccHHHHHHHHHHHhccCeEEEEEeCCCCCCc--------------cChhhhHHhhhc--CCCC
Q 038751 244 RIAKAIIEGLEGSLPNLRELNSLLEYIHTSIKEKKFFLILDDVWPDDY--------------SKWEPFHNCLMN--GLCG 307 (915)
Q Consensus 244 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~--------------~~~~~l~~~l~~--~~~g 307 (915)
...+ .........+.......+.+|++|++..-.. .....+...+.. ...+
T Consensus 88 ------------~~~g-~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~ 154 (476)
T 2ce7_A 88 ------------LFVG-VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEG 154 (476)
T ss_dssp ------------CCTT-HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGT
T ss_pred ------------HHhc-ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCC
Confidence 0001 1112233344445556789999999843111 012223332321 1235
Q ss_pred ceEEEEcCchHHHh--hhc---CcCeEeCCCCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCCCc
Q 038751 308 SRILVTTRKETVAR--MME---STDVISIKELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKGLP 374 (915)
Q Consensus 308 s~iivTtR~~~v~~--~~~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~P 374 (915)
..||.||..+.... ... -...+.+...+.++-.+++..++-...- ....++ ..|++.+.|..
T Consensus 155 viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l-~~~v~l----~~la~~t~G~s 221 (476)
T 2ce7_A 155 IIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPL-AEDVNL----EIIAKRTPGFV 221 (476)
T ss_dssp EEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB-CTTCCH----HHHHHTCTTCC
T ss_pred EEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCC-cchhhH----HHHHHhcCCCc
Confidence 56777776654322 111 1347888888888888888766533211 111122 34777888877
No 219
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.08 E-value=0.0061 Score=66.02 Aligned_cols=181 Identities=15% Similarity=0.100 Sum_probs=96.7
Q ss_pred cccCccccchHHHHHHHHHHhcc----cc---cccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCC
Q 038751 168 INVSDVRGRDEEKNILKRKLLCE----SN---EERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPF 240 (915)
Q Consensus 168 ~~~~~~~Gr~~~~~~l~~~L~~~----~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~ 240 (915)
+.-+++.|-++.+++|.+.+.-+ +- .+-...+-|.++|++|+|||.||+++++. ....| +.++.+.
T Consensus 179 v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e--~~~~f---i~v~~s~-- 251 (437)
T 4b4t_I 179 ESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQ--TSATF---LRIVGSE-- 251 (437)
T ss_dssp CCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHH--HTCEE---EEEESGG--
T ss_pred CcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHH--hCCCE---EEEEHHH--
Confidence 33456889998888887765421 10 02234577899999999999999999984 33222 2333332
Q ss_pred CHHHHHHHHHHHhhCCCCCcccHHHHHHH-HHHHhccCeEEEEEeCCCCC-------C-ccC------hhhhHHhhhc--
Q 038751 241 DEFRIAKAIIEGLEGSLPNLRELNSLLEY-IHTSIKEKKFFLILDDVWPD-------D-YSK------WEPFHNCLMN-- 303 (915)
Q Consensus 241 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~-l~~~l~~k~~LlVlDdvw~~-------~-~~~------~~~l~~~l~~-- 303 (915)
+.....+ +.+..... +...-...+.+|++|++... . ... ...+...+..
T Consensus 252 ------------l~sk~vG--esek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~ 317 (437)
T 4b4t_I 252 ------------LIQKYLG--DGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFD 317 (437)
T ss_dssp ------------GCCSSSS--HHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCC
T ss_pred ------------hhhccCc--hHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcC
Confidence 1111111 11222222 22233467899999998421 0 000 1112222222
Q ss_pred CCCCceEEEEcCchHHHhh--hc---CcCeEeCCCCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCCCc
Q 038751 304 GLCGSRILVTTRKETVARM--ME---STDVISIKELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKGLP 374 (915)
Q Consensus 304 ~~~gs~iivTtR~~~v~~~--~~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~P 374 (915)
...+..||.||..+..... +. -...+.+..-+.++-.++|+.+.-.-. ....-++ ..|++.+.|.-
T Consensus 318 ~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~-l~~dvdl----~~LA~~T~GfS 388 (437)
T 4b4t_I 318 DRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMN-LSEDVNL----ETLVTTKDDLS 388 (437)
T ss_dssp CSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSC-BCSCCCH----HHHHHHCCSCC
T ss_pred CCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCC-CCCcCCH----HHHHHhCCCCC
Confidence 2334456667765543221 11 134678888888888888877653321 1112233 34666677654
No 220
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.03 E-value=0.0029 Score=67.86 Aligned_cols=152 Identities=14% Similarity=0.081 Sum_probs=86.0
Q ss_pred CccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 038751 171 SDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAII 250 (915)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 250 (915)
..++|++..++.+...+... .-+.++|++|+|||+||+.+.+. .... ...+..+......++.....
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~--------~~vll~G~pGtGKT~la~~la~~--~~~~---~~~i~~~~~~~~~~l~g~~~ 93 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG--------GHILLEGVPGLAKTLSVNTLAKT--MDLD---FHRIQFTPDLLPSDLIGTMI 93 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT--------CCEEEESCCCHHHHHHHHHHHHH--TTCC---EEEEECCTTCCHHHHHEEEE
T ss_pred cceeCcHHHHHHHHHHHHcC--------CeEEEECCCCCcHHHHHHHHHHH--hCCC---eEEEecCCCCChhhcCCcee
Confidence 35889999999888888643 24889999999999999999873 2222 22344443333333221100
Q ss_pred HHhhCCCCCcccHHHHHHHHHHHhccC---eEEEEEeCCCCCCccChhhhHHhhhcC-----------CCCceEEEEcCc
Q 038751 251 EGLEGSLPNLRELNSLLEYIHTSIKEK---KFFLILDDVWPDDYSKWEPFHNCLMNG-----------LCGSRILVTTRK 316 (915)
Q Consensus 251 ~~l~~~~~~~~~~~~~~~~l~~~l~~k---~~LlVlDdvw~~~~~~~~~l~~~l~~~-----------~~gs~iivTtR~ 316 (915)
.....+.. .+... ..++++|++..........+...+..+ .....|+.|+..
T Consensus 94 ---~~~~~~~~-----------~~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np 159 (331)
T 2r44_A 94 ---YNQHKGNF-----------EVKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNP 159 (331)
T ss_dssp ---EETTTTEE-----------EEEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECT
T ss_pred ---ecCCCCce-----------EeccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCC
Confidence 00000000 00011 258999999655544455555554432 223455555542
Q ss_pred hH------H-HhhhcCcC-eEeCCCCCHHHHHHHHHHhHcC
Q 038751 317 ET------V-ARMMESTD-VISIKELSEQECWSLFKRFAFS 349 (915)
Q Consensus 317 ~~------v-~~~~~~~~-~~~l~~L~~~~~~~lf~~~~~~ 349 (915)
.. + ........ .+.+.+.+.++-.+++.+.+..
T Consensus 160 ~~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~ 200 (331)
T 2r44_A 160 VEQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNM 200 (331)
T ss_dssp TCCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCT
T ss_pred CcccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhcccc
Confidence 21 1 11112223 5899999999999999887643
No 221
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.99 E-value=0.0016 Score=78.59 Aligned_cols=135 Identities=16% Similarity=0.203 Sum_probs=73.6
Q ss_pred CccccchHHHHHHHHHHhccccc---ccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHH
Q 038751 171 SDVRGRDEEKNILKRKLLCESNE---ERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAK 247 (915)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 247 (915)
..++|.+..++.+...+.....+ .......+.++|++|+|||++|+.+.+. .. ...+.++.+......
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~--l~---~~~~~i~~s~~~~~~---- 528 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA--LG---IELLRFDMSEYMERH---- 528 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHH--HT---CEEEEEEGGGCSSSS----
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHH--hc---CCEEEEechhhcchh----
Confidence 35889999888888877543210 1223457899999999999999999873 21 223444444322110
Q ss_pred HHHHHhhCCCCCcccHHHHHHHHHHHhc-cCeEEEEEeCCCCCCccChhhhHHhhhcCC-----------CCceEEEEcC
Q 038751 248 AIIEGLEGSLPNLRELNSLLEYIHTSIK-EKKFFLILDDVWPDDYSKWEPFHNCLMNGL-----------CGSRILVTTR 315 (915)
Q Consensus 248 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iivTtR 315 (915)
....+.+..++....++ ...+.+.+. ...-+|+||++.....+..+.+...+..+. ....||.||.
T Consensus 529 -~~~~l~g~~~g~~g~~~-~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN 606 (758)
T 1r6b_X 529 -TVSRLIGAPPGYVGFDQ-GGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTN 606 (758)
T ss_dssp -CCSSSCCCCSCSHHHHH-TTHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEEC
T ss_pred -hHhhhcCCCCCCcCccc-cchHHHHHHhCCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecC
Confidence 00011111111111110 111222222 345789999996655555666666665431 2345777775
Q ss_pred c
Q 038751 316 K 316 (915)
Q Consensus 316 ~ 316 (915)
.
T Consensus 607 ~ 607 (758)
T 1r6b_X 607 A 607 (758)
T ss_dssp S
T ss_pred c
Confidence 4
No 222
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=96.98 E-value=8.9e-06 Score=88.99 Aligned_cols=164 Identities=13% Similarity=0.103 Sum_probs=85.3
Q ss_pred CCCCceEEEEecCCCCchhhhhhhhhHHHHhhHHHHHhhcC-CCCCcceEEEeeeCCCCC--CCcccCccCccEEEEcCc
Q 038751 687 KNLIDLILIFNEREESDDEKASEEMNEEKEAKHEAVCEALR-PPPDIKSLEIMVFKGRTP--SNWIGSLNKLKMLTLNSF 763 (915)
Q Consensus 687 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~--p~~~~~l~~L~~L~L~~~ 763 (915)
++|+.|+++.|.... . ....+...+. .+++|+.|++++|..... ......+++|++|+|++|
T Consensus 72 ~~L~~L~Ls~n~l~~----------~-----~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n 136 (372)
T 3un9_A 72 SSLRQLNLAGVRMTP----------V-----KCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN 136 (372)
T ss_dssp TTCCEEECTTSCCCH----------H-----HHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS
T ss_pred hhCCEEEecCCCCCH----------H-----HHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC
Confidence 578899998776321 0 2223334444 346899999998865321 112225778999999988
Q ss_pred CCCC-CCCCC-----CCCCCcceeeccccccceEeCccccCCcccccccccccCCCcccccCcccceeeecCcccccccc
Q 038751 764 VKCE-IMPPL-----GKLPSLEILRIWHMRSVKRVGDEFLGMEISDHIHIHGTSSSSSVIAFPKLQKLELTGMDELEEWD 837 (915)
Q Consensus 764 ~~~~-~l~~l-----~~Lp~L~~L~L~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~ 837 (915)
.... ....+ ...++|++|+|++|. ++..+..... ..+...++|++|+++++. +....
T Consensus 137 ~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~---------------~~L~~~~~L~~L~Ls~N~-l~~~g 199 (372)
T 3un9_A 137 SLGPEACKDLRDLLLHDQCQITTLRLSNNP-LTAAGVAVLM---------------EGLAGNTSVTHLSLLHTG-LGDEG 199 (372)
T ss_dssp CCCHHHHHHHHHHHHSTTCCCCEEECCSSC-CHHHHHHHHH---------------HHHHTCSSCCEEECTTSS-CHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCccceeeCCCCC-CChHHHHHHH---------------HHHhcCCCcCEEeCCCCC-CCcHH
Confidence 5321 11111 246789999999886 4332111100 001234556666666542 22111
Q ss_pred cC--CCCcccCcccceeecccCccccC-----CCcCCCCCCCcCeEeEcCCcc
Q 038751 838 FG--NDDITIMPHIKSLYITYCEKLKS-----LPELLLRSTTLESLTIFGVPI 883 (915)
Q Consensus 838 ~~--~~~~~~lp~L~~L~l~~c~~L~~-----lp~~l~~l~~L~~L~l~~c~~ 883 (915)
.. ...+...++|+.|++++|. +.. ++..+...++|++|++++|+.
T Consensus 200 ~~~L~~~L~~~~~L~~L~Ls~N~-i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 200 LELLAAQLDRNRQLQELNVAYNG-AGDTAALALARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp HHHHHHHGGGCSCCCEEECCSSC-CCHHHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred HHHHHHHHhcCCCcCeEECCCCC-CCHHHHHHHHHHHHhCCCCCEEeccCCCC
Confidence 00 0012234566666666662 331 233333445666666666643
No 223
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.96 E-value=0.0023 Score=73.41 Aligned_cols=165 Identities=15% Similarity=0.165 Sum_probs=78.5
Q ss_pred CccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 038751 171 SDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAII 250 (915)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 250 (915)
.+++|-+...+.+.+.+.-..-........+.++|++|+||||||+.++.. ....| .-+.++...+...+.....
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~--l~~~~---~~i~~~~~~~~~~~~g~~~ 155 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKS--LGRKF---VRISLGGVRDESEIRGHRR 155 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHH--HTCEE---EEECCCC------------
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHh--cCCCe---EEEEecccchhhhhhhHHH
Confidence 457888877777765543211101123468999999999999999999873 22222 2233333222222211111
Q ss_pred HHhhCCCCCcccHHHHHHHHHHHhccCeEEEEEeCCCCCCcc----ChhhhHHhhhcCC---------------CCceEE
Q 038751 251 EGLEGSLPNLRELNSLLEYIHTSIKEKKFFLILDDVWPDDYS----KWEPFHNCLMNGL---------------CGSRIL 311 (915)
Q Consensus 251 ~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~----~~~~l~~~l~~~~---------------~gs~ii 311 (915)
...+. ....+...+... ....-++++|++...... ....+...+.... ....||
T Consensus 156 ~~ig~------~~~~~~~~~~~a-~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI 228 (543)
T 3m6a_A 156 TYVGA------MPGRIIQGMKKA-GKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFI 228 (543)
T ss_dssp --------------CHHHHHHTT-CSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEE
T ss_pred HHhcc------CchHHHHHHHHh-hccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEE
Confidence 11100 001111222222 223338889998543222 1233444442211 234566
Q ss_pred EEcCchHH-H-hhhcCcCeEeCCCCCHHHHHHHHHHhH
Q 038751 312 VTTRKETV-A-RMMESTDVISIKELSEQECWSLFKRFA 347 (915)
Q Consensus 312 vTtR~~~v-~-~~~~~~~~~~l~~L~~~~~~~lf~~~~ 347 (915)
.||..... . ........+.+.+++.++-..++..+.
T Consensus 229 ~ttN~~~~l~~aL~~R~~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 229 ATANNLATIPGPLRDRMEIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp EECSSTTTSCHHHHHHEEEEECCCCCHHHHHHHHHHTH
T ss_pred eccCccccCCHHHHhhcceeeeCCCCHHHHHHHHHHHH
Confidence 66664321 1 111123478999999998888887654
No 224
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.96 E-value=0.00081 Score=71.11 Aligned_cols=56 Identities=14% Similarity=0.021 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeC
Q 038751 178 EEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVS 237 (915)
Q Consensus 178 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs 237 (915)
...+.+.+++..... .....+.|+|++|+|||+||+.+++.... ..-..+.+++++
T Consensus 135 ~~~~~~~~~i~~~~~---~~~~~lll~G~~GtGKT~La~aia~~~~~-~~g~~v~~~~~~ 190 (308)
T 2qgz_A 135 EAFSAILDFVEQYPS---AEQKGLYLYGDMGIGKSYLLAAMAHELSE-KKGVSTTLLHFP 190 (308)
T ss_dssp HHHHHHHHHHHHCSC---SSCCEEEEECSTTSSHHHHHHHHHHHHHH-HSCCCEEEEEHH
T ss_pred HHHHHHHHHHHhccc---cCCceEEEECCCCCCHHHHHHHHHHHHHH-hcCCcEEEEEHH
Confidence 344455555543211 12467889999999999999999884320 222234555543
No 225
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.92 E-value=0.00028 Score=73.34 Aligned_cols=158 Identities=15% Similarity=0.108 Sum_probs=80.4
Q ss_pred cCccccchHHHHHHHHHHhccccc------ccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHH
Q 038751 170 VSDVRGRDEEKNILKRKLLCESNE------ERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEF 243 (915)
Q Consensus 170 ~~~~~Gr~~~~~~l~~~L~~~~~~------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 243 (915)
-.+++|.+..++.+.+.+..-... +....+-+.|+|++|+|||+||+.+++. ....|- .+..+.-.
T Consensus 10 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~--~~~~~~---~v~~~~~~--- 81 (268)
T 2r62_A 10 FKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGE--AHVPFF---SMGGSSFI--- 81 (268)
T ss_dssp STTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHH--HTCCCC---CCCSCTTT---
T ss_pred HHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCCEE---EechHHHH---
Confidence 356899988877777665421100 0011233789999999999999999884 222221 11111100
Q ss_pred HHHHHHHHHhhCCCCCcccHHHHHHHHHHHhccCeEEEEEeCCCCCCc---------------cChhhhHHhhhcC---C
Q 038751 244 RIAKAIIEGLEGSLPNLRELNSLLEYIHTSIKEKKFFLILDDVWPDDY---------------SKWEPFHNCLMNG---L 305 (915)
Q Consensus 244 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~---------------~~~~~l~~~l~~~---~ 305 (915)
....+. ....... .+......++.+|++||+..-.. .....+...+... .
T Consensus 82 -------~~~~~~--~~~~~~~---~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 149 (268)
T 2r62_A 82 -------EMFVGL--GASRVRD---LFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSEN 149 (268)
T ss_dssp -------TSCSSS--CSSSSST---THHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSC
T ss_pred -------Hhhcch--HHHHHHH---HHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCC
Confidence 001010 0011111 12222234668999999943111 1222333333221 1
Q ss_pred CCceEEEEcCchHHH--hhhc---CcCeEeCCCCCHHHHHHHHHHhH
Q 038751 306 CGSRILVTTRKETVA--RMME---STDVISIKELSEQECWSLFKRFA 347 (915)
Q Consensus 306 ~gs~iivTtR~~~v~--~~~~---~~~~~~l~~L~~~~~~~lf~~~~ 347 (915)
....||.||..+... .... ....+.+.+.+.++-.+++...+
T Consensus 150 ~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~ 196 (268)
T 2r62_A 150 APVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHI 196 (268)
T ss_dssp SCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHT
T ss_pred CCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHH
Confidence 224566666654321 1111 23567888888888888887665
No 226
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.90 E-value=0.0034 Score=69.11 Aligned_cols=101 Identities=13% Similarity=0.076 Sum_probs=60.5
Q ss_pred hcCCCCCcceEEEeeeCCCCCCCcccCccCccEEEEcCcCCCCCCC--CCCCCCCcceeeccccccceEeCccccCCccc
Q 038751 725 ALRPPPDIKSLEIMVFKGRTPSNWIGSLNKLKMLTLNSFVKCEIMP--PLGKLPSLEILRIWHMRSVKRVGDEFLGMEIS 802 (915)
Q Consensus 725 ~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~--~l~~Lp~L~~L~L~~~~~l~~~~~~~~~~~~l 802 (915)
.+..+++|+.+.+.++....+|...-...+|+.+.|.++ +..++ .+..+++|+.+.+.. +++.++...+....+
T Consensus 175 aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~--~l~~I~~~aF~~~~L 250 (401)
T 4fdw_A 175 IFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPE--NVSTIGQEAFRESGI 250 (401)
T ss_dssp TTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCT--TCCEECTTTTTTCCC
T ss_pred HhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEecCC--CccCccccccccCCc
Confidence 456678899999887766666554334578888888643 33333 356777788887765 366666655544556
Q ss_pred ccccccccCC---CcccccCcccceeeecC
Q 038751 803 DHIHIHGTSS---SSSVIAFPKLQKLELTG 829 (915)
Q Consensus 803 ~~l~l~~~~~---~~~~~~f~~L~~L~l~~ 829 (915)
+.+.+.++-. ......+++|+.+.+.+
T Consensus 251 ~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~ 280 (401)
T 4fdw_A 251 TTVKLPNGVTNIASRAFYYCPELAEVTTYG 280 (401)
T ss_dssp SEEEEETTCCEECTTTTTTCTTCCEEEEES
T ss_pred cEEEeCCCccEEChhHhhCCCCCCEEEeCC
Confidence 6666643321 11233455666666543
No 227
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.86 E-value=0.0026 Score=77.44 Aligned_cols=135 Identities=17% Similarity=0.253 Sum_probs=72.2
Q ss_pred ccccchHHHHHHHHHHhccccc---ccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHH
Q 038751 172 DVRGRDEEKNILKRKLLCESNE---ERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKA 248 (915)
Q Consensus 172 ~~~Gr~~~~~~l~~~L~~~~~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 248 (915)
.++|.+..++.+...+.....+ .......+.|+|++|+|||++|+.+.+. ....-...+.++.+...... .
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~--~~~~~~~~i~i~~~~~~~~~-~--- 632 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT--LFDTEEAMIRIDMTEYMEKH-A--- 632 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHH--HHSSGGGEEEECTTTCCSSG-G---
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhccchh-H---
Confidence 5799999999988887653210 1223467899999999999999998873 21111123344444322110 0
Q ss_pred HHHHhhCCCCC---cccHHHHHHHHHHHhccCeEEEEEeCCCCCCccChhhhHHhhhcCC-----------CCceEEEEc
Q 038751 249 IIEGLEGSLPN---LRELNSLLEYIHTSIKEKKFFLILDDVWPDDYSKWEPFHNCLMNGL-----------CGSRILVTT 314 (915)
Q Consensus 249 i~~~l~~~~~~---~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iivTt 314 (915)
...+.+..++ ......+...+.. ...-+|+||++........+.+...+..+. .+..||+||
T Consensus 633 -~s~l~g~~~~~~G~~~~g~l~~~~~~---~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~ts 708 (854)
T 1qvr_A 633 -VSRLIGAPPGYVGYEEGGQLTEAVRR---RPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTS 708 (854)
T ss_dssp -GGGC--------------CHHHHHHH---CSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEEC
T ss_pred -HHHHcCCCCCCcCccccchHHHHHHh---CCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEec
Confidence 0111111111 0111122222222 234589999996655555666666666431 244588887
Q ss_pred Cc
Q 038751 315 RK 316 (915)
Q Consensus 315 R~ 316 (915)
..
T Consensus 709 n~ 710 (854)
T 1qvr_A 709 NL 710 (854)
T ss_dssp CT
T ss_pred Cc
Confidence 74
No 228
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.74 E-value=0.0079 Score=66.17 Aligned_cols=58 Identities=10% Similarity=0.107 Sum_probs=35.3
Q ss_pred ccccCCCCceeEEEeccCCCCceeccccch-hccccCCcceeeecCCCCCcccccc-ccCCCcCCCccc
Q 038751 549 PFSIFDAKTLHSLILVYSSNNQVAASPVLQ-GLFDQLTCLRALKIEDLPPTIKIPK-GLENLIHLRYLK 615 (915)
Q Consensus 549 ~~~~~~~~~Lr~L~l~~~~~~lrv~~~~lp-~~i~~L~~Lr~L~l~~~~~~~~lP~-~i~~L~~Lr~L~ 615 (915)
...+.+|.+|+++.+..+ +..++ ..|.++.+|+.+++.+.-. .++. .+.++.+|+.+.
T Consensus 64 ~~AF~~c~~L~~i~lp~~-------i~~I~~~aF~~c~~L~~i~lp~~l~--~I~~~aF~~c~~L~~i~ 123 (394)
T 4fs7_A 64 YAAFQGCRKVTEIKIPST-------VREIGEFAFENCSKLEIINIPDSVK--MIGRCTFSGCYALKSIL 123 (394)
T ss_dssp TTTTTTCTTEEEEECCTT-------CCEECTTTTTTCTTCCEECCCTTCC--EECTTTTTTCTTCCCCC
T ss_pred HHHhhCCCCceEEEeCCC-------ccCcchhHhhCCCCCcEEEeCCCce--Eccchhhcccccchhhc
Confidence 345778888888888532 33343 5577888888888754321 3333 245556666554
No 229
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.71 E-value=0.0044 Score=73.26 Aligned_cols=182 Identities=12% Similarity=0.073 Sum_probs=98.3
Q ss_pred cCccccchHHHHHHHHHHh----ccccc---ccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCH
Q 038751 170 VSDVRGRDEEKNILKRKLL----CESNE---ERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDE 242 (915)
Q Consensus 170 ~~~~~Gr~~~~~~l~~~L~----~~~~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 242 (915)
-.++.|-++.+++|.+.+. .+.-. +-...+-|.++|++|+|||+||+.+++. ...+ .+.|+.+.
T Consensus 203 ~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~e--lg~~---~~~v~~~~---- 273 (806)
T 3cf2_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAF---FFLINGPE---- 273 (806)
T ss_dssp GGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTT--TTCE---EEEEEHHH----
T ss_pred hhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--hCCe---EEEEEhHH----
Confidence 3467888888777776653 22110 1234577899999999999999999984 3322 23343321
Q ss_pred HHHHHHHHHHhhCCCCCcccHHHHHHHHHHHhccCeEEEEEeCCCCC------CccCh-----hhhHHhhhcC--CCCce
Q 038751 243 FRIAKAIIEGLEGSLPNLRELNSLLEYIHTSIKEKKFFLILDDVWPD------DYSKW-----EPFHNCLMNG--LCGSR 309 (915)
Q Consensus 243 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~------~~~~~-----~~l~~~l~~~--~~gs~ 309 (915)
+.....+ .....+...+....+..+.+|++|++..- ..... ..+...+... ..+..
T Consensus 274 ----------l~sk~~g-ese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~ 342 (806)
T 3cf2_A 274 ----------IMSKLAG-ESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVI 342 (806)
T ss_dssp ----------HHSSCTT-HHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEE
T ss_pred ----------hhcccch-HHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEE
Confidence 1111111 12223334444444677899999998421 00111 1222222221 22334
Q ss_pred EEEEcCchHH-Hhhh----cCcCeEeCCCCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCCCchH
Q 038751 310 ILVTTRKETV-ARMM----ESTDVISIKELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKGLPLA 376 (915)
Q Consensus 310 iivTtR~~~v-~~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~PLa 376 (915)
||.||..... -..+ .-...+++...+.++-.++|+.+.-.... ...-++ ..|++++.|.--|
T Consensus 343 VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~-~~dvdl----~~lA~~T~Gfsga 409 (806)
T 3cf2_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL-ADDVDL----EQVANETHGHVGA 409 (806)
T ss_dssp EEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEE-CTTCCH----HHHHHHCCSCCHH
T ss_pred EEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCC-CcccCH----HHHHHhcCCCCHH
Confidence 5556654432 1111 12457889989998888888876532211 112233 4467778876543
No 230
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.67 E-value=0.00097 Score=69.40 Aligned_cols=68 Identities=18% Similarity=0.342 Sum_probs=45.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEe--CCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHhc
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCV--SDPFDEFRIAKAIIEGLEGSLPNLRELNSLLEYIHTSIK 275 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v--s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 275 (915)
.+++.|+|++|+||||||.++... . -..++|+++ .+..+. . ..+.+.....+.+.+.
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~---~--G~~VlyIs~~~eE~v~~---------------~-~~~le~~l~~i~~~l~ 181 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA---L--GGKDKYATVRFGEPLSG---------------Y-NTDFNVFVDDIARAML 181 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH---H--HTTSCCEEEEBSCSSTT---------------C-BCCHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh---C--CCCEEEEEecchhhhhh---------------h-hcCHHHHHHHHHHHHh
Confidence 356789999999999999998763 1 123467777 332110 0 0345666666666666
Q ss_pred cCeEEEEEeCCC
Q 038751 276 EKKFFLILDDVW 287 (915)
Q Consensus 276 ~k~~LlVlDdvw 287 (915)
..+ +||+|++.
T Consensus 182 ~~~-LLVIDsI~ 192 (331)
T 2vhj_A 182 QHR-VIVIDSLK 192 (331)
T ss_dssp HCS-EEEEECCT
T ss_pred hCC-EEEEeccc
Confidence 556 99999984
No 231
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.62 E-value=0.022 Score=62.09 Aligned_cols=50 Identities=28% Similarity=0.273 Sum_probs=34.5
Q ss_pred ccccchHHHHHHHHHHh----cccc--------------------cccCceEEEEEEecCCCcHHHHHHHHhcc
Q 038751 172 DVRGRDEEKNILKRKLL----CESN--------------------EERNAVQIISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 172 ~~~Gr~~~~~~l~~~L~----~~~~--------------------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
.++|.+..++.+...+. .... +.......+.++|++|+|||++|+.+++.
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHH
Confidence 47888888887777662 1000 00112346889999999999999999873
No 232
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.54 E-value=0.009 Score=59.52 Aligned_cols=84 Identities=17% Similarity=0.170 Sum_probs=51.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhhC------------CCCCcccHHH
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEG------------SLPNLRELNS 265 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~------------~~~~~~~~~~ 265 (915)
-.++.|+|.+|+||||||..+.. . .-..++|++....++...+.+ +.+..+. ......+..+
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~-~----~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL-L----SGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQRR 93 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH-H----HCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH-H----cCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHHH
Confidence 35899999999999999998876 1 124578888777566655443 3332211 1111122233
Q ss_pred HHHHHHHHhccCeEEEEEeCCC
Q 038751 266 LLEYIHTSIKEKKFFLILDDVW 287 (915)
Q Consensus 266 ~~~~l~~~l~~k~~LlVlDdvw 287 (915)
....+...+..+.-+||+|.+-
T Consensus 94 ~~~~~~~l~~~~~~lliiD~~~ 115 (220)
T 2cvh_A 94 VIGSLKKTVDSNFALVVVDSIT 115 (220)
T ss_dssp HHHHHHHHCCTTEEEEEEECCC
T ss_pred HHHHHHHHhhcCCCEEEEcCcH
Confidence 4444444444457799999874
No 233
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.51 E-value=0.0073 Score=63.31 Aligned_cols=25 Identities=20% Similarity=0.381 Sum_probs=22.1
Q ss_pred ceEEEEEEecCCCcHHHHHHHHhcc
Q 038751 197 AVQIISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
..+.+.++|++|+|||+||+.+++.
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4567889999999999999999984
No 234
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.42 E-value=0.038 Score=57.11 Aligned_cols=156 Identities=13% Similarity=0.104 Sum_probs=80.1
Q ss_pred cCccccchHHHHHHHHHHhcccc--------cccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCC
Q 038751 170 VSDVRGRDEEKNILKRKLLCESN--------EERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFD 241 (915)
Q Consensus 170 ~~~~~Gr~~~~~~l~~~L~~~~~--------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 241 (915)
-.++.|-++.++.|.+.+..+-. +-.-... +.++|++|+||||||+.++.... . ..+++....-.+
T Consensus 9 ~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~G-vlL~Gp~GtGKTtLakala~~~~--~---~~i~i~g~~l~~ 82 (274)
T 2x8a_A 9 WADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAG-VLLAGPPGCGKTLLAKAVANESG--L---NFISVKGPELLN 82 (274)
T ss_dssp ---CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSE-EEEESSTTSCHHHHHHHHHHHTT--C---EEEEEETTTTCS
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCe-EEEECCCCCcHHHHHHHHHHHcC--C---CEEEEEcHHHHh
Confidence 34678888877777765432110 0011122 89999999999999999987322 1 234443322110
Q ss_pred HHHHHHHHHHHhhCCCCCcccHHHHHHHH-HHHhccCeEEEEEeCCCCCC-------c----cChhhhHHhhhcCC--CC
Q 038751 242 EFRIAKAIIEGLEGSLPNLRELNSLLEYI-HTSIKEKKFFLILDDVWPDD-------Y----SKWEPFHNCLMNGL--CG 307 (915)
Q Consensus 242 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l-~~~l~~k~~LlVlDdvw~~~-------~----~~~~~l~~~l~~~~--~g 307 (915)
.. ..+.......+ ...-...+.++++|++.... . .....+...+..+. ..
T Consensus 83 --------------~~--~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~ 146 (274)
T 2x8a_A 83 --------------MY--VGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQ 146 (274)
T ss_dssp --------------ST--THHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTC
T ss_pred --------------hh--hhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCC
Confidence 00 00011111112 22123457899999984310 0 01122233333332 23
Q ss_pred ceEEEEcCchHHHhh--h---cCcCeEeCCCCCHHHHHHHHHHhH
Q 038751 308 SRILVTTRKETVARM--M---ESTDVISIKELSEQECWSLFKRFA 347 (915)
Q Consensus 308 s~iivTtR~~~v~~~--~---~~~~~~~l~~L~~~~~~~lf~~~~ 347 (915)
.-++.+|..+.+... . .-...+.+...+.++-.++|+...
T Consensus 147 ~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 147 VFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp EEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHT
T ss_pred EEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHH
Confidence 445556665543321 1 225578898899988888888765
No 235
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=96.39 E-value=0.00023 Score=77.74 Aligned_cols=67 Identities=13% Similarity=0.110 Sum_probs=34.2
Q ss_pred ccCCCCCCceEEEEecCCCCchhhhhhhhhHHHHhhHHHHHhhcCCCCCcceEEEeeeCCCC-----CCCcccCccCccE
Q 038751 683 LEKKKNLIDLILIFNEREESDDEKASEEMNEEKEAKHEAVCEALRPPPDIKSLEIMVFKGRT-----PSNWIGSLNKLKM 757 (915)
Q Consensus 683 l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-----~p~~~~~l~~L~~ 757 (915)
+...++|++|+|++|.... .....+.+.+..+++|+.|++++|.... ++..+...++|++
T Consensus 179 L~~~~~L~~L~Ls~N~l~~---------------~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~ 243 (372)
T 3un9_A 179 LAGNTSVTHLSLLHTGLGD---------------EGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLEL 243 (372)
T ss_dssp HHTCSSCCEEECTTSSCHH---------------HHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCE
T ss_pred HhcCCCcCEEeCCCCCCCc---------------HHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCE
Confidence 4455667777776664210 0122334455555667777776665432 1122224456666
Q ss_pred EEEcCcC
Q 038751 758 LTLNSFV 764 (915)
Q Consensus 758 L~L~~~~ 764 (915)
|+|++|.
T Consensus 244 L~Ls~N~ 250 (372)
T 3un9_A 244 LHLYFNE 250 (372)
T ss_dssp EECTTSS
T ss_pred EeccCCC
Confidence 6666653
No 236
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.29 E-value=0.016 Score=63.76 Aligned_cols=124 Identities=17% Similarity=0.170 Sum_probs=68.8
Q ss_pred CCCCCcceEEEeeeCCCCCCCcccCccCccEEEEcCcCCCCCCCCCCCCCCcceeeccccccceEeCccccCCccccccc
Q 038751 727 RPPPDIKSLEIMVFKGRTPSNWIGSLNKLKMLTLNSFVKCEIMPPLGKLPSLEILRIWHMRSVKRVGDEFLGMEISDHIH 806 (915)
Q Consensus 727 ~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~Lp~L~~L~L~~~~~l~~~~~~~~~~~~l~~l~ 806 (915)
..+.+|+.+.+..+...-....+..+.+|+.+.+...... -..+..+.+|+.+.+.. .++.++...+
T Consensus 250 ~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~--~~~F~~~~~L~~i~l~~--~i~~I~~~aF--------- 316 (394)
T 4fs7_A 250 YGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVP--EKTFYGCSSLTEVKLLD--SVKFIGEEAF--------- 316 (394)
T ss_dssp TTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEEC--TTTTTTCTTCCEEEECT--TCCEECTTTT---------
T ss_pred cccccceeEEcCCCcceeeccccccccccceeccCceeec--ccccccccccccccccc--ccceechhhh---------
Confidence 4456677777654432222333446677777766543210 11245667788877754 3666665432
Q ss_pred ccccCCCcccccCcccceeeecCcccccccccCCCCcccCcccceeecccCccccCCC-cCCCCCCCcCeEeEc
Q 038751 807 IHGTSSSSSVIAFPKLQKLELTGMDELEEWDFGNDDITIMPHIKSLYITYCEKLKSLP-ELLLRSTTLESLTIF 879 (915)
Q Consensus 807 l~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~lp~L~~L~l~~c~~L~~lp-~~l~~l~~L~~L~l~ 879 (915)
..+.+|+.+.+.+ +++.+. ...+..+.+|+.+.+... +..++ ..+.++++|+.+++.
T Consensus 317 ----------~~c~~L~~i~lp~--~v~~I~--~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 317 ----------ESCTSLVSIDLPY--LVEEIG--KRSFRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp ----------TTCTTCCEECCCT--TCCEEC--TTTTTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEEE
T ss_pred ----------cCCCCCCEEEeCC--cccEEh--HHhccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEEC
Confidence 2455667666643 233332 223446677777777543 56665 345667778887774
No 237
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.24 E-value=0.014 Score=62.96 Aligned_cols=46 Identities=20% Similarity=0.179 Sum_probs=32.7
Q ss_pred cCccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcc
Q 038751 170 VSDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 170 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
-.+++|.+..++.+...+.... ..-|.|+|++|+|||++|+.+.+.
T Consensus 23 f~~i~G~~~~~~~l~~~~~~~~------~~~vLl~G~~GtGKT~la~~la~~ 68 (350)
T 1g8p_A 23 FSAIVGQEDMKLALLLTAVDPG------IGGVLVFGDRGTGKSTAVRALAAL 68 (350)
T ss_dssp GGGSCSCHHHHHHHHHHHHCGG------GCCEEEECCGGGCTTHHHHHHHHH
T ss_pred chhccChHHHHHHHHHHhhCCC------CceEEEECCCCccHHHHHHHHHHh
Confidence 3468999886665444443221 123889999999999999999873
No 238
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.24 E-value=0.038 Score=61.92 Aligned_cols=177 Identities=15% Similarity=0.095 Sum_probs=91.0
Q ss_pred ccCccccchHHHHHHHHHHhccccc------ccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCH
Q 038751 169 NVSDVRGRDEEKNILKRKLLCESNE------ERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDE 242 (915)
Q Consensus 169 ~~~~~~Gr~~~~~~l~~~L~~~~~~------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 242 (915)
.-.+++|.++.++++.+....-.+. +-.-.+-|.|+|++|+||||||+.++... .. ..+.++.+.-.
T Consensus 29 ~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~--~~---~~i~i~g~~~~-- 101 (499)
T 2dhr_A 29 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA--RV---PFITASGSDFV-- 101 (499)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHT--TC---CEEEEEGGGGT--
T ss_pred CHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHh--CC---CEEEEehhHHH--
Confidence 3457899987766666554321100 00112238999999999999999998842 21 23344433210
Q ss_pred HHHHHHHHHHhhCCCCCcccHHHHHHHHHHHhc----cCeEEEEEeCCCCCCc----------cC----hhhhHHhhhcC
Q 038751 243 FRIAKAIIEGLEGSLPNLRELNSLLEYIHTSIK----EKKFFLILDDVWPDDY----------SK----WEPFHNCLMNG 304 (915)
Q Consensus 243 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~k~~LlVlDdvw~~~~----------~~----~~~l~~~l~~~ 304 (915)
.... ......+...++ ..+.++++|++..-.. .. ...+...+..+
T Consensus 102 ------------~~~~-----g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~ 164 (499)
T 2dhr_A 102 ------------EMFV-----GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGF 164 (499)
T ss_dssp ------------SSCT-----THHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGC
T ss_pred ------------Hhhh-----hhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhccc
Confidence 0000 111222333332 2357999999842110 01 12233333322
Q ss_pred C--CCceEEEEcCchHHHhh--h---cCcCeEeCCCCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCCCc
Q 038751 305 L--CGSRILVTTRKETVARM--M---ESTDVISIKELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKGLP 374 (915)
Q Consensus 305 ~--~gs~iivTtR~~~v~~~--~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~P 374 (915)
. .+..|+.||..+..... . .....+.++..+.++-.+++..++-... ...... ...|++.+.|..
T Consensus 165 ~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~-l~~dv~----l~~lA~~t~G~~ 236 (499)
T 2dhr_A 165 EKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKP-LAEDVD----LALLAKRTPGFV 236 (499)
T ss_dssp CSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSC-CCCSST----THHHHTTSCSCC
T ss_pred ccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCC-CChHHH----HHHHHHhcCCCC
Confidence 2 33455556665544221 1 1245788999999888888876653211 111111 234677777765
No 239
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.18 E-value=0.02 Score=58.54 Aligned_cols=180 Identities=16% Similarity=0.126 Sum_probs=86.7
Q ss_pred cCccccchHHHHHHHHHHhccccc------ccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHH
Q 038751 170 VSDVRGRDEEKNILKRKLLCESNE------ERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEF 243 (915)
Q Consensus 170 ~~~~~Gr~~~~~~l~~~L~~~~~~------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 243 (915)
-.+++|.+..+.++.+....-... +-.-.+-+.|+|++|+||||||+.+++.. . ...+.+...
T Consensus 15 ~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~--~---~~~i~~~~~------ 83 (254)
T 1ixz_A 15 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA--R---VPFITASGS------ 83 (254)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHT--T---CCEEEEEHH------
T ss_pred HHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHh--C---CCEEEeeHH------
Confidence 346889876666555443221100 00011228999999999999999998742 2 122333221
Q ss_pred HHHHHHHHHhhCCCCCcccHHHHHHHHHHHhccCeEEEEEeCCCCC----------CccC----hhhhHHhhhcCCC--C
Q 038751 244 RIAKAIIEGLEGSLPNLRELNSLLEYIHTSIKEKKFFLILDDVWPD----------DYSK----WEPFHNCLMNGLC--G 307 (915)
Q Consensus 244 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~----------~~~~----~~~l~~~l~~~~~--g 307 (915)
. +.... .. .....+...+...-...+.++++|++..- .... ...+...+..+.. .
T Consensus 84 ~----~~~~~----~~-~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~ 154 (254)
T 1ixz_A 84 D----FVEMF----VG-VGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTA 154 (254)
T ss_dssp H----HHHSC----TT-HHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCC
T ss_pred H----HHHHH----hh-HHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCC
Confidence 1 11100 00 00111122222222245689999998310 0001 1223333333322 2
Q ss_pred ceEEEEcCchHHHhh--h---cCcCeEeCCCCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCCCc
Q 038751 308 SRILVTTRKETVARM--M---ESTDVISIKELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKGLP 374 (915)
Q Consensus 308 s~iivTtR~~~v~~~--~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~P 374 (915)
..++.||..+..... . .....+.+...+.++-.+++...+-+.. ......+ ..+++.+.|.-
T Consensus 155 ~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~-~~~~~~~----~~la~~~~G~~ 221 (254)
T 1ixz_A 155 IVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKP-LAEDVDL----ALLAKRTPGFV 221 (254)
T ss_dssp EEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSC-BCTTCCH----HHHHHTCTTCC
T ss_pred EEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCC-CCcccCH----HHHHHHcCCCC
Confidence 334445555543221 1 1245788999999888888876653211 1111122 34666777754
No 240
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.10 E-value=0.0093 Score=71.71 Aligned_cols=158 Identities=13% Similarity=0.093 Sum_probs=85.7
Q ss_pred cCccccchHHHHHHHHHHhccccc-------ccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCH
Q 038751 170 VSDVRGRDEEKNILKRKLLCESNE-------ERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDE 242 (915)
Q Consensus 170 ~~~~~Gr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 242 (915)
-.+++|.+..++++.+++...-.. .-.....|.|+|++|+||||||+.+.+. ....| +.++.+.
T Consensus 203 ~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~--l~~~~---i~v~~~~---- 273 (806)
T 1ypw_A 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGPE---- 273 (806)
T ss_dssp GGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHT--TTCEE---EEEEHHH----
T ss_pred HHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH--cCCcE---EEEEchH----
Confidence 356899999998888887531100 1123456899999999999999999873 22222 3333211
Q ss_pred HHHHHHHHHHhhCCCCCcccHHHHHHHHHHHhccCeEEEEEeCCCCCCc------c-----ChhhhHHhhhcC--CCCce
Q 038751 243 FRIAKAIIEGLEGSLPNLRELNSLLEYIHTSIKEKKFFLILDDVWPDDY------S-----KWEPFHNCLMNG--LCGSR 309 (915)
Q Consensus 243 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~------~-----~~~~l~~~l~~~--~~gs~ 309 (915)
+.....+ .....+...+.......+.++++|++...-. . ....+...+... ..+..
T Consensus 274 ----------l~~~~~g-~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~ 342 (806)
T 1ypw_A 274 ----------IMSKLAG-ESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVI 342 (806)
T ss_dssp ----------HSSSSTT-HHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCE
T ss_pred ----------hhhhhhh-hHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEE
Confidence 1111111 1112223333344445678999999832110 0 112222323221 22345
Q ss_pred EEEEcCchHHH-hhh----cCcCeEeCCCCCHHHHHHHHHHhH
Q 038751 310 ILVTTRKETVA-RMM----ESTDVISIKELSEQECWSLFKRFA 347 (915)
Q Consensus 310 iivTtR~~~v~-~~~----~~~~~~~l~~L~~~~~~~lf~~~~ 347 (915)
+|.||..+... ..+ .....+.+...+.++-.+++...+
T Consensus 343 vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~ 385 (806)
T 1ypw_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp EEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTT
T ss_pred EecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHH
Confidence 56566554211 111 113457888889999989888765
No 241
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.05 E-value=0.059 Score=57.77 Aligned_cols=157 Identities=10% Similarity=-0.042 Sum_probs=97.8
Q ss_pred ceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHH-Hhc
Q 038751 197 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLRELNSLLEYIHT-SIK 275 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~ 275 (915)
-.++..++|..|.||++.|+.+.+... ...|+....+.+....+. .++.+.+.. -+-
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~---------------------~~l~~~~~~~plf 74 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAA-AQGFEEHHTFSIDPNTDW---------------------NAIFSLCQAMSLF 74 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHH-HHTCCEEEEEECCTTCCH---------------------HHHHHHHHHHHHC
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHH-hCCCCeeEEEEecCCCCH---------------------HHHHHHhcCcCCc
Confidence 356899999999999999988876321 223432222222222222 333332221 233
Q ss_pred cCeEEEEEeCCCC-CCccChhhhHHhhhcCCCCceEEEEcCc-------hHHHhhh-cCcCeEeCCCCCHHHHHHHHHHh
Q 038751 276 EKKFFLILDDVWP-DDYSKWEPFHNCLMNGLCGSRILVTTRK-------ETVARMM-ESTDVISIKELSEQECWSLFKRF 346 (915)
Q Consensus 276 ~k~~LlVlDdvw~-~~~~~~~~l~~~l~~~~~gs~iivTtR~-------~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~ 346 (915)
+++-++|+|++.. -....++.+...+.....++.+|+++.. ..+...+ .....++..+++.++....+.+.
T Consensus 75 ~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~ 154 (343)
T 1jr3_D 75 ASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAAR 154 (343)
T ss_dssp CSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHH
Confidence 5667889999865 4446677888888766677877776643 2333332 33568999999999998888776
Q ss_pred HcCCCCCCchhHHHHHHHHHHHhcCCCchHHHH
Q 038751 347 AFSGRSPTECEQLEEIGRKIVGKCKGLPLAAKT 379 (915)
Q Consensus 347 ~~~~~~~~~~~~l~~~~~~i~~~c~G~PLai~~ 379 (915)
+-..+-... .+.+..+++.++|....+..
T Consensus 155 ~~~~g~~i~----~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 155 AKQLNLELD----DAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp HHHTTCEEC----HHHHHHHHHSSTTCHHHHHH
T ss_pred HHHcCCCCC----HHHHHHHHHHhchHHHHHHH
Confidence 533221111 24567788999998887654
No 242
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.02 E-value=0.017 Score=61.78 Aligned_cols=84 Identities=19% Similarity=0.208 Sum_probs=54.6
Q ss_pred ceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhhCCCC-----CcccHHHHHHHHH
Q 038751 197 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLP-----NLRELNSLLEYIH 271 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 271 (915)
.-+++.|+|++|+||||||..++..... .=..++|++....++.. .++.++.... ...+.++....+.
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~--~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~ 132 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQK--MGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVD 132 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHH--TTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh--cCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHH
Confidence 3479999999999999999888764221 11347888887777654 3444443211 1234556666665
Q ss_pred HHhc-cCeEEEEEeCCC
Q 038751 272 TSIK-EKKFFLILDDVW 287 (915)
Q Consensus 272 ~~l~-~k~~LlVlDdvw 287 (915)
..++ .+.-++|+|.+-
T Consensus 133 ~l~~~~~~dlvVIDSi~ 149 (356)
T 3hr8_A 133 ELVRSGVVDLIVVDSVA 149 (356)
T ss_dssp HHHHTSCCSEEEEECTT
T ss_pred HHhhhcCCCeEEehHhh
Confidence 5553 456689999883
No 243
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.01 E-value=0.057 Score=55.93 Aligned_cols=180 Identities=17% Similarity=0.116 Sum_probs=88.5
Q ss_pred ccCccccchHHHHHHHHHHhccccc-------ccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCC
Q 038751 169 NVSDVRGRDEEKNILKRKLLCESNE-------ERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFD 241 (915)
Q Consensus 169 ~~~~~~Gr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 241 (915)
.-.+++|.+..++++.+....-... -.-... +.|+|++|+||||||+.++... . ...+.+...
T Consensus 38 ~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~g-vll~Gp~GtGKTtl~~~i~~~~--~---~~~i~~~~~---- 107 (278)
T 1iy2_A 38 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKG-VLLVGPPGVGKTHLARAVAGEA--R---VPFITASGS---- 107 (278)
T ss_dssp CGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCE-EEEECCTTSSHHHHHHHHHHHT--T---CCEEEEEHH----
T ss_pred CHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCe-EEEECCCcChHHHHHHHHHHHc--C---CCEEEecHH----
Confidence 3457899887766665544321100 001122 8899999999999999998742 2 122333221
Q ss_pred HHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHhccCeEEEEEeCCCCC--C--------ccChh----hhHHhhhcCCC-
Q 038751 242 EFRIAKAIIEGLEGSLPNLRELNSLLEYIHTSIKEKKFFLILDDVWPD--D--------YSKWE----PFHNCLMNGLC- 306 (915)
Q Consensus 242 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~--~--------~~~~~----~l~~~l~~~~~- 306 (915)
.+ .... .. .....+...+...-...+.++++|++..- . ...+. .+...+..+..
T Consensus 108 --~~----~~~~----~~-~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~ 176 (278)
T 1iy2_A 108 --DF----VEMF----VG-VGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD 176 (278)
T ss_dssp --HH----HHST----TT-HHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTT
T ss_pred --HH----HHHH----hh-HHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCC
Confidence 11 1100 00 00111112222222245689999998310 0 00111 22222332222
Q ss_pred -CceEEEEcCchHHHh-----hhcCcCeEeCCCCCHHHHHHHHHHhHcCCCCCCchhHHHHHHHHHHHhcCCCc
Q 038751 307 -GSRILVTTRKETVAR-----MMESTDVISIKELSEQECWSLFKRFAFSGRSPTECEQLEEIGRKIVGKCKGLP 374 (915)
Q Consensus 307 -gs~iivTtR~~~v~~-----~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G~P 374 (915)
...++.||..+.+.. .......+.+...+.++-.+++..++-... ...... ...+++.+.|..
T Consensus 177 ~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~-~~~~~~----~~~la~~~~G~~ 245 (278)
T 1iy2_A 177 TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKP-LAEDVD----LALLAKRTPGFV 245 (278)
T ss_dssp CCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSC-BCTTCC----HHHHHHTCTTCC
T ss_pred CCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCC-CCcccC----HHHHHHHcCCCC
Confidence 223444555543221 112345789999999988888877653211 111112 234677777765
No 244
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.01 E-value=0.02 Score=57.97 Aligned_cols=89 Identities=18% Similarity=0.122 Sum_probs=52.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHhccccccc----CCCeEEEEEeCCCCCHHHHHHHHHHHhhCCC---------CCcccHH
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYNDKDVIE----NFDKRIWVCVSDPFDEFRIAKAIIEGLEGSL---------PNLRELN 264 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~---------~~~~~~~ 264 (915)
-.++.|+|++|+|||||+..+........ .-..++|+.....++...+. .+++.++... ....+..
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~ 102 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNTD 102 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCHH
Confidence 36899999999999999988876321111 12468888877765555443 3344443221 0011222
Q ss_pred H---HHHHHHHHhc-cCeEEEEEeCCC
Q 038751 265 S---LLEYIHTSIK-EKKFFLILDDVW 287 (915)
Q Consensus 265 ~---~~~~l~~~l~-~k~~LlVlDdvw 287 (915)
+ ....+.+.+. .+.-+||+|++.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~lliiD~~~ 129 (243)
T 1n0w_A 103 HQTQLLYQASAMMVESRYALLIVDSAT 129 (243)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETSS
T ss_pred HHHHHHHHHHHHHhcCCceEEEEeCch
Confidence 2 2333444443 467789999883
No 245
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.01 E-value=0.017 Score=58.00 Aligned_cols=114 Identities=16% Similarity=0.052 Sum_probs=61.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhhCCCC--------------------
Q 038751 199 QIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLP-------------------- 258 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-------------------- 258 (915)
.++.|+|.+|+|||||++.+....... =..+.|+.... ....+...+. .++....
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~~~--~~~v~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGLRD--GDPCIYVTTEE--SRDSIIRQAK-QFNWDFEEYIEKKLIIIDALMKEKEDQ 98 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHH--TCCEEEEESSS--CHHHHHHHHH-HTTCCCGGGBTTTEEEEECCC----CT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHC--CCeEEEEEccc--CHHHHHHHHH-HhcchHHHHhhCCEEEEeccccccCce
Confidence 689999999999999999887532211 12456665433 3444443332 3321110
Q ss_pred ---CcccHHHHHHHHHHHhc-cCeE--EEEEeCCCCC---CccChhhhHHhhhc--CCCCceEEEEcCch
Q 038751 259 ---NLRELNSLLEYIHTSIK-EKKF--FLILDDVWPD---DYSKWEPFHNCLMN--GLCGSRILVTTRKE 317 (915)
Q Consensus 259 ---~~~~~~~~~~~l~~~l~-~k~~--LlVlDdvw~~---~~~~~~~l~~~l~~--~~~gs~iivTtR~~ 317 (915)
...+.+++...+...+. .++- +||+|..... +......+...+.. ...|..||++|...
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 99 WSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp TBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred eeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 01144555555555442 2334 9999998421 22233444444432 13477888888754
No 246
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.85 E-value=0.0056 Score=60.81 Aligned_cols=112 Identities=17% Similarity=0.039 Sum_probs=59.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhhCCCCC--cccHHHHHHHHHHHhc
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPN--LRELNSLLEYIHTSIK 275 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~l~~~l~ 275 (915)
-.++.|+|..|.||||++..+... ...+-..++.+..... .. ....++..++..... .....++.+.+.+.+.
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r--~~~~g~kVli~~~~~d--~r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~ 86 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHR--LEYADVKYLVFKPKID--TR-SIRNIQSRTGTSLPSVEVESAPEILNYIMSNSF 86 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHH--HHHTTCCEEEEEECCC--GG-GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTS
T ss_pred cEEEEEECCCCCcHHHHHHHHHHH--HHhcCCEEEEEEeccC--ch-HHHHHHHhcCCCccccccCCHHHHHHHHHHHhh
Confidence 468899999999999999776663 2222223344433321 11 112333333322111 1233445555555444
Q ss_pred cCe-EEEEEeCCCCCCccChhhhHHhhhcCCCCceEEEEcCch
Q 038751 276 EKK-FFLILDDVWPDDYSKWEPFHNCLMNGLCGSRILVTTRKE 317 (915)
Q Consensus 276 ~k~-~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~ 317 (915)
+.+ -+||+|.+..-+.+..+.+. .+.+ .|-.||+|-+..
T Consensus 87 ~~~~dvViIDEaQ~l~~~~ve~l~-~L~~--~gi~Vil~Gl~~ 126 (223)
T 2b8t_A 87 NDETKVIGIDEVQFFDDRICEVAN-ILAE--NGFVVIISGLDK 126 (223)
T ss_dssp CTTCCEEEECSGGGSCTHHHHHHH-HHHH--TTCEEEEECCSB
T ss_pred CCCCCEEEEecCccCcHHHHHHHH-HHHh--CCCeEEEEeccc
Confidence 444 49999998543333333332 2333 277899888843
No 247
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.80 E-value=0.034 Score=59.55 Aligned_cols=57 Identities=19% Similarity=0.212 Sum_probs=39.7
Q ss_pred ceEEEEEEecCCCcHHHHHHHHhccccccc----CCCeEEEEEeCCCCCHHHHHHHHHHHhh
Q 038751 197 AVQIISLVGMGGIGKTTLAQFAYNDKDVIE----NFDKRIWVCVSDPFDEFRIAKAIIEGLE 254 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 254 (915)
.-.++.|+|.+|+||||||..++....... .-..++|++....++...+.. ++..++
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g 181 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFN 181 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcC
Confidence 457899999999999999988776422211 124688999888777766543 344443
No 248
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.79 E-value=0.023 Score=60.47 Aligned_cols=89 Identities=17% Similarity=0.210 Sum_probs=53.7
Q ss_pred ceEEEEEEecCCCcHHHHHHHHhccccccc---------CC-----CeEEEEEeCCCCCHHHHHHHHHHHhhCCC-----
Q 038751 197 AVQIISLVGMGGIGKTTLAQFAYNDKDVIE---------NF-----DKRIWVCVSDPFDEFRIAKAIIEGLEGSL----- 257 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---------~F-----~~~~wv~vs~~~~~~~~~~~i~~~l~~~~----- 257 (915)
.-.++.|+|.+|+||||||..++....... .. ..++|++....++..++.+ +++.++...
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~~~~~ 175 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQTVLD 175 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHhc
Confidence 347899999999999999988775322111 11 3678999888877776654 344443321
Q ss_pred ----CCcccHH---HHHHHHHHHhc--cCeEEEEEeCC
Q 038751 258 ----PNLRELN---SLLEYIHTSIK--EKKFFLILDDV 286 (915)
Q Consensus 258 ----~~~~~~~---~~~~~l~~~l~--~k~~LlVlDdv 286 (915)
....+.+ ++...+...+. .+.-+||+|.+
T Consensus 176 ~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl 213 (322)
T 2i1q_A 176 NTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSL 213 (322)
T ss_dssp TEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECS
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECc
Confidence 0011222 23344445443 34558888877
No 249
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.74 E-value=0.027 Score=59.82 Aligned_cols=88 Identities=15% Similarity=0.212 Sum_probs=53.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHhccccccc----CCCeEEEEEeCCCCCHHHHHHHHHHHhhCCCC---------CcccHH
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYNDKDVIE----NFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLP---------NLRELN 264 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~---------~~~~~~ 264 (915)
-.++.|+|.+|+||||||..++....... .-..++|++....++..++.+ +++.++.... ...+.+
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~l~~~~~~~~~ 185 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKALGLDIDNVMNNIYYIRAINTD 185 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHhCCCHHHHhccEEEEeCCCHH
Confidence 46899999999999999988776422111 024688999888777766553 3455433210 011122
Q ss_pred ---HHHHHHHHHhc--cCeEEEEEeCC
Q 038751 265 ---SLLEYIHTSIK--EKKFFLILDDV 286 (915)
Q Consensus 265 ---~~~~~l~~~l~--~k~~LlVlDdv 286 (915)
++...+...++ .+.-+||+|.+
T Consensus 186 ~~~~~l~~l~~~~~~~~~~~lvVIDsl 212 (324)
T 2z43_A 186 HQIAIVDDLQELVSKDPSIKLIVVDSV 212 (324)
T ss_dssp HHHHHHHHHHHHHHHCTTEEEEEETTT
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEeCc
Confidence 23444444443 45668888887
No 250
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.73 E-value=0.036 Score=52.98 Aligned_cols=22 Identities=36% Similarity=0.477 Sum_probs=19.5
Q ss_pred EEEEEecCCCcHHHHHHHHhcc
Q 038751 200 IISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
.++|+|+.|+|||||++.+...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999988764
No 251
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.69 E-value=0.032 Score=57.75 Aligned_cols=83 Identities=10% Similarity=0.078 Sum_probs=53.1
Q ss_pred EEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhhCCCCC-----cccHHHH-HHHHHHH
Q 038751 200 IISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPN-----LRELNSL-LEYIHTS 273 (915)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~-~~~l~~~ 273 (915)
++-|+|++|+||||||.+++........=..++||+....++.. .+++++.+... ..+.++. ...+...
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l 104 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQL 104 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHHH
Confidence 68999999999999997776632211112468899988888764 25666543221 1344554 3333332
Q ss_pred --h-ccCeEEEEEeCCC
Q 038751 274 --I-KEKKFFLILDDVW 287 (915)
Q Consensus 274 --l-~~k~~LlVlDdvw 287 (915)
+ .++.-+||+|-+.
T Consensus 105 ~~i~~~~~~lvVIDSI~ 121 (333)
T 3io5_A 105 DAIERGEKVVVFIDSLG 121 (333)
T ss_dssp HTCCTTCCEEEEEECST
T ss_pred HHhhccCceEEEEeccc
Confidence 3 4567899999984
No 252
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.69 E-value=0.012 Score=56.49 Aligned_cols=118 Identities=16% Similarity=0.062 Sum_probs=62.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCC---CCCHHHHHHHHHHHh---hCCCC-Cc-------ccH
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSD---PFDEFRIAKAIIEGL---EGSLP-NL-------REL 263 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~---~~~~~~~~~~i~~~l---~~~~~-~~-------~~~ 263 (915)
...|.|++..|.||||+|-...-. .-++=-.+.++.+.+ .....+++..+.-.+ +.... .. ...
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalR--A~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a 105 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAAR--AVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAAC 105 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHH--HHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHH
Confidence 356778888889999999554431 112222344454433 223334443331000 00000 01 111
Q ss_pred HHHHHHHHHHhccCe-EEEEEeCCCC---CCccChhhhHHhhhcCCCCceEEEEcCch
Q 038751 264 NSLLEYIHTSIKEKK-FFLILDDVWP---DDYSKWEPFHNCLMNGLCGSRILVTTRKE 317 (915)
Q Consensus 264 ~~~~~~l~~~l~~k~-~LlVlDdvw~---~~~~~~~~l~~~l~~~~~gs~iivTtR~~ 317 (915)
........+.+.+.+ =|||||++-. -..-..+.+...+........||+|+|..
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 223344445554444 4999999821 12345567777777777788999999975
No 253
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.60 E-value=0.03 Score=60.18 Aligned_cols=83 Identities=17% Similarity=0.119 Sum_probs=53.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhhCCCC-----CcccHHHHHHHHHH
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLP-----NLRELNSLLEYIHT 272 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~ 272 (915)
-+++.|+|.+|+||||||..+...... .-..++|++....++.. ..+.++.... ...+.+++...+..
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~--~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~~ 146 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQK--AGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIMEL 146 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHH--TTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHH--CCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHHH
Confidence 358889999999999999887664221 22368899998877654 2344433211 12345666666666
Q ss_pred Hhc-cCeEEEEEeCCC
Q 038751 273 SIK-EKKFFLILDDVW 287 (915)
Q Consensus 273 ~l~-~k~~LlVlDdvw 287 (915)
..+ ...-+||+|.+-
T Consensus 147 l~~~~~~~lVVIDsl~ 162 (366)
T 1xp8_A 147 LVRSGAIDVVVVDSVA 162 (366)
T ss_dssp HHTTTCCSEEEEECTT
T ss_pred HHhcCCCCEEEEeChH
Confidence 554 345699999883
No 254
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.24 E-value=0.15 Score=51.38 Aligned_cols=23 Identities=30% Similarity=0.418 Sum_probs=20.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
-.+++|+|+.|+|||||.+.+..
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 36899999999999999999865
No 255
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.21 E-value=0.043 Score=57.22 Aligned_cols=87 Identities=16% Similarity=0.107 Sum_probs=45.0
Q ss_pred ceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCC-CCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHhc
Q 038751 197 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSD-PFDEFRIAKAIIEGLEGSLPNLRELNSLLEYIHTSIK 275 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 275 (915)
...+++|+|.+|+||||++..+......... ..+..+.... .....+.+....+..+.......+...+...+.. +
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G-~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~-~- 180 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKH-KKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKEL-F- 180 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTC-CCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHH-G-
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcC-CEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHH-h-
Confidence 3469999999999999999888763221111 1344444332 1223333333333332221111233344444443 3
Q ss_pred cCeEEEEEeCC
Q 038751 276 EKKFFLILDDV 286 (915)
Q Consensus 276 ~k~~LlVlDdv 286 (915)
.+.=++|+|-.
T Consensus 181 ~~~dlvIiDT~ 191 (296)
T 2px0_A 181 SEYDHVFVDTA 191 (296)
T ss_dssp GGSSEEEEECC
T ss_pred cCCCEEEEeCC
Confidence 34457888944
No 256
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.19 E-value=0.15 Score=50.97 Aligned_cols=23 Identities=30% Similarity=0.588 Sum_probs=20.9
Q ss_pred EEEEEEecCCCcHHHHHHHHhcc
Q 038751 199 QIISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
.+++|+|+.|.|||||.+.+..-
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999763
No 257
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.18 E-value=0.077 Score=53.34 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=20.9
Q ss_pred EEEEEEecCCCcHHHHHHHHhcc
Q 038751 199 QIISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
.+++|+|+.|+|||||++.+..-
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999763
No 258
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.16 E-value=0.042 Score=58.85 Aligned_cols=83 Identities=17% Similarity=0.143 Sum_probs=53.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhhCCCC-----CcccHHHHHHHHHH
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLP-----NLRELNSLLEYIHT 272 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~ 272 (915)
-+++.|+|.+|+||||||.++..... ..=..++|++....++.. ..+.++.... ...+.++....+..
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~--~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~~ 133 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQ--AAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIADM 133 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH--hCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHH
Confidence 46899999999999999988876322 222357899988777653 2344443211 12245555555554
Q ss_pred Hhc-cCeEEEEEeCCC
Q 038751 273 SIK-EKKFFLILDDVW 287 (915)
Q Consensus 273 ~l~-~k~~LlVlDdvw 287 (915)
... .+.-+||+|.+-
T Consensus 134 l~~~~~~~lIVIDsl~ 149 (349)
T 2zr9_A 134 LVRSGALDIIVIDSVA 149 (349)
T ss_dssp HHTTTCCSEEEEECGG
T ss_pred HHhcCCCCEEEEcChH
Confidence 443 446699999873
No 259
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.14 E-value=0.019 Score=56.29 Aligned_cols=42 Identities=21% Similarity=0.294 Sum_probs=32.3
Q ss_pred chHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhc
Q 038751 176 RDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 176 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
|++.++.+.+.+.... .....+|+|+|..|+||||+++.+..
T Consensus 3 ~~~~~~~l~~~~~~~~---~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIK---TAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp HHHHHHHHHHHHHTSC---CSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc---cCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 5556777777776432 22457999999999999999998876
No 260
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=95.13 E-value=0.0092 Score=61.05 Aligned_cols=84 Identities=18% Similarity=0.047 Sum_probs=61.3
Q ss_pred cceEEEEEEccccccCc---cccCCCCceeEEEeccCCCCceeccccchhccccCC--cceeeecCCCCCcccccc----
Q 038751 533 EKLRHLMLVLGFWAKFP---FSIFDAKTLHSLILVYSSNNQVAASPVLQGLFDQLT--CLRALKIEDLPPTIKIPK---- 603 (915)
Q Consensus 533 ~~~r~Lsl~~~~~~~~~---~~~~~~~~Lr~L~l~~~~~~lrv~~~~lp~~i~~L~--~Lr~L~l~~~~~~~~lP~---- 603 (915)
..++.|++++|.+..++ ..+..+++|++|.+++|. +..+ ..++.+. +|++|+|++||....+|.
T Consensus 170 ~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~------i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y 242 (267)
T 3rw6_A 170 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE------LKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTY 242 (267)
T ss_dssp TTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC------CCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHH
T ss_pred CCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc------cCCc-hhhhhcccCCcceEEccCCcCccccCcchhH
Confidence 57889999999887532 445689999999999884 4444 3345455 899999999998755552
Q ss_pred ---ccCCCcCCCcccCcccCCcC
Q 038751 604 ---GLENLIHLRYLKLSMVPNGI 623 (915)
Q Consensus 604 ---~i~~L~~Lr~L~l~~lP~~i 623 (915)
.+..+++|+.||-..+|+.|
T Consensus 243 ~~~il~~~P~L~~LDg~~v~p~i 265 (267)
T 3rw6_A 243 ISAIRERFPKLLRLDGHELPPPI 265 (267)
T ss_dssp HHHHHHHCTTCCEESSCBCCCCC
T ss_pred HHHHHHHCcccCeECCcCCCCCC
Confidence 36778888888876666554
No 261
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.08 E-value=0.04 Score=59.06 Aligned_cols=82 Identities=16% Similarity=0.144 Sum_probs=51.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhhCCCC-----CcccHHHHHHHHHH
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLP-----NLRELNSLLEYIHT 272 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~ 272 (915)
-+++.|+|.+|+||||||..+...... .=..++|++....++... +..++.... ...+.+++...+..
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~~--~g~~vlyid~E~s~~~~~-----a~~~g~~~~~l~i~~~~~~e~~~~~~~~ 135 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQR--EGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDA 135 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHH--TTCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEeCCCCccHHH-----HHHcCCChhheeeeCCCCHHHHHHHHHH
Confidence 468999999999999999887764222 223688999988776542 344433211 11234555555544
Q ss_pred Hhc-cCeEEEEEeCC
Q 038751 273 SIK-EKKFFLILDDV 286 (915)
Q Consensus 273 ~l~-~k~~LlVlDdv 286 (915)
..+ .+.-+||+|.+
T Consensus 136 l~~~~~~~lVVIDsl 150 (356)
T 1u94_A 136 LARSGAVDVIVVDSV 150 (356)
T ss_dssp HHHHTCCSEEEEECG
T ss_pred HHhccCCCEEEEcCH
Confidence 432 44569999987
No 262
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.76 E-value=0.07 Score=56.04 Aligned_cols=45 Identities=18% Similarity=0.202 Sum_probs=32.0
Q ss_pred ccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhc
Q 038751 174 RGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 174 ~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
+|....+..+...+.... ......+|+|.|..|+||||||+.+..
T Consensus 70 ~~~~~~l~~~~~~~l~~~--~~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 70 VTARQTLQQATYQFLGKP--EPKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp HHHHHHHHHHHHHHHTCC--CCCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHhccC--CCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 444455555555554432 134567999999999999999998865
No 263
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=94.74 E-value=0.022 Score=63.91 Aligned_cols=42 Identities=19% Similarity=0.174 Sum_probs=35.6
Q ss_pred ccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcc
Q 038751 172 DVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 172 ~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
.++|++..++.+...+... .-|.++|++|+|||+||+.+.+.
T Consensus 23 ~ivGq~~~i~~l~~al~~~--------~~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSG--------ESVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHT--------CEEEEECCSSSSHHHHHHHGGGG
T ss_pred hhHHHHHHHHHHHHHHhcC--------CeeEeecCchHHHHHHHHHHHHH
Confidence 5889999998888887643 24789999999999999999884
No 264
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.73 E-value=0.076 Score=55.58 Aligned_cols=38 Identities=16% Similarity=0.109 Sum_probs=26.2
Q ss_pred EEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeC
Q 038751 199 QIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVS 237 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs 237 (915)
.++.|+|.+|+|||||++.++....... =..++|+...
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~~~~~~-G~~v~~~~~e 73 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQWGTAM-GKKVGLAMLE 73 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTS-CCCEEEEESS
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHHc-CCeEEEEeCc
Confidence 5899999999999999988876432221 1135566543
No 265
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=94.73 E-value=0.0078 Score=61.60 Aligned_cols=60 Identities=22% Similarity=0.113 Sum_probs=45.7
Q ss_pred CCCCcceEEEeeeCCCCC---CCcccCccCccEEEEcCcCCCCCCCCCCCCC--Ccceeecccccc
Q 038751 728 PPPDIKSLEIMVFKGRTP---SNWIGSLNKLKMLTLNSFVKCEIMPPLGKLP--SLEILRIWHMRS 788 (915)
Q Consensus 728 ~~~~L~~L~l~~~~~~~~---p~~~~~l~~L~~L~L~~~~~~~~l~~l~~Lp--~L~~L~L~~~~~ 788 (915)
.+++|+.|++++|....+ |..+..+++|+.|+|++|... .+..++.+. +|++|.|.+|+-
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~-~~~~l~~l~~l~L~~L~L~~Npl 232 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK-SERELDKIKGLKLEELWLDGNSL 232 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCC-SGGGGGGGTTSCCSEEECTTSTT
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccC-CchhhhhcccCCcceEEccCCcC
Confidence 367899999999998765 456668999999999988533 233333343 899999999883
No 266
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.62 E-value=0.12 Score=55.26 Aligned_cols=90 Identities=23% Similarity=0.212 Sum_probs=51.6
Q ss_pred ceEEEEEEecCCCcHHHHHHHHhcccccccCC----CeEEEEEeCCCCCHHHHHHHHHHHhhCCC------------CCc
Q 038751 197 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENF----DKRIWVCVSDPFDEFRIAKAIIEGLEGSL------------PNL 260 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F----~~~~wv~vs~~~~~~~~~~~i~~~l~~~~------------~~~ 260 (915)
.-.++.|+|++|+|||||+..++......... ..++|++....+....+ ..+.+...... ...
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~~~~~ 208 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVLKHIYVARAFNS 208 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEECCSH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEecCCh
Confidence 45799999999999999998887642111111 24588887665544333 33444332110 001
Q ss_pred ccHHHHHHHHHHHhc------cCeEEEEEeCCC
Q 038751 261 RELNSLLEYIHTSIK------EKKFFLILDDVW 287 (915)
Q Consensus 261 ~~~~~~~~~l~~~l~------~k~~LlVlDdvw 287 (915)
....++...+...+. .+.-+||+|.+-
T Consensus 209 ~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~t 241 (349)
T 1pzn_A 209 NHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLT 241 (349)
T ss_dssp HHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSS
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCEEEEeCch
Confidence 112233444444443 467799999883
No 267
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.49 E-value=0.13 Score=51.39 Aligned_cols=47 Identities=23% Similarity=0.216 Sum_probs=31.4
Q ss_pred ceEEEEEEecCCCcHHHHHHHHhccccc---cc-CCCeEEEEEeCCCCCHH
Q 038751 197 AVQIISLVGMGGIGKTTLAQFAYNDKDV---IE-NFDKRIWVCVSDPFDEF 243 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~-~F~~~~wv~vs~~~~~~ 243 (915)
.-.+++|+|+.|+|||||++.++..... .. .-...+|+.....+...
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~ 74 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPE 74 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHH
Confidence 3478999999999999999998752111 11 12357787765544433
No 268
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.43 E-value=0.028 Score=55.40 Aligned_cols=37 Identities=24% Similarity=0.240 Sum_probs=27.1
Q ss_pred HHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhc
Q 038751 180 KNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 180 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
.++|.+.+... .....+|+|+|+.|+|||||++.+..
T Consensus 8 ~~~~~~~~~~~----~~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 8 CQGVLERLDPR----QPGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp HHHHHHHSCTT----CCSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHhc----CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 44455554332 12457999999999999999998876
No 269
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=94.42 E-value=0.0029 Score=61.36 Aligned_cols=99 Identities=21% Similarity=0.158 Sum_probs=64.2
Q ss_pred ChhhHhHhhccCCCCCCceEEEEe-cCCCCchhhhhhhhhHHHHhhHHHHHhhcCCCCCcceEEEeeeCCCC-----CCC
Q 038751 674 DADEAKNAHLEKKKNLIDLILIFN-EREESDDEKASEEMNEEKEAKHEAVCEALRPPPDIKSLEIMVFKGRT-----PSN 747 (915)
Q Consensus 674 ~~~~~~~~~l~~l~~L~~L~L~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-----~p~ 747 (915)
+..+.....+...+.|++|+|++| .... .....+.+.+...++|++|++++|.... +..
T Consensus 23 ~~~~~l~~~l~~~~~L~~L~L~~n~~i~~---------------~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~ 87 (185)
T 1io0_A 23 DVEETLKRIQNNDPDLEEVNLNNIMNIPV---------------PTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAE 87 (185)
T ss_dssp CHHHHHHHHHTTCTTCCEEECTTCTTCCH---------------HHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCEEEecCCCCCCH---------------HHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHH
Confidence 445566667778889999999877 4321 0334456677778889999998887532 122
Q ss_pred cccCccCccEEEEcCcCCCCC-----CCCCCCCCCcceeec--cccc
Q 038751 748 WIGSLNKLKMLTLNSFVKCEI-----MPPLGKLPSLEILRI--WHMR 787 (915)
Q Consensus 748 ~~~~l~~L~~L~L~~~~~~~~-----l~~l~~Lp~L~~L~L--~~~~ 787 (915)
.+...++|++|+|++|..... ...+...++|++|+| ++|.
T Consensus 88 ~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~ 134 (185)
T 1io0_A 88 MLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQP 134 (185)
T ss_dssp HHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSC
T ss_pred HHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCC
Confidence 233557899999988853221 122456678888888 5554
No 270
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.39 E-value=0.15 Score=55.37 Aligned_cols=56 Identities=18% Similarity=0.195 Sum_probs=36.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHhccccc----ccCCCeEEEEEeCCCCCHHHHHHHHHHHhh
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYNDKDV----IENFDKRIWVCVSDPFDEFRIAKAIIEGLE 254 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~----~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 254 (915)
-.++.|+|.+|+|||||+..++-.... .+.-..++|++....+....+. .+.+.++
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~-~~a~~~g 237 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLV-SIAQRFG 237 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTT
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHH-HHHHHcC
Confidence 468999999999999999866421111 1123458888887766655443 3555554
No 271
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.36 E-value=0.027 Score=59.84 Aligned_cols=97 Identities=13% Similarity=0.038 Sum_probs=52.0
Q ss_pred HHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccc-cCCCeEEEEEeCCCCCHHHHHHHHHHHhhC----
Q 038751 181 NILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVI-ENFDKRIWVCVSDPFDEFRIAKAIIEGLEG---- 255 (915)
Q Consensus 181 ~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~---- 255 (915)
-++++.+..-. .-..++|+|.+|+|||||++.+.+..... ..++ ++++-+++..... .++.+.+..
T Consensus 162 iraID~~~pi~-----rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~-~I~~lIGER~~Ev---~~~~~~~~~~vV~ 232 (422)
T 3ice_A 162 ARVLDLASPIG-----RGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCV-LMVLLIDERPEEV---TEMQRLVKGEVVA 232 (422)
T ss_dssp HHHHHHHSCCB-----TTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSE-EEEEEESSCHHHH---HHHHTTCSSEEEE
T ss_pred ceeeeeeeeec-----CCcEEEEecCCCCChhHHHHHHHHHHhhcCCCee-EEEEEecCChHHH---HHHHHHhCeEEEE
Confidence 35666665542 23578999999999999999887632111 1233 3456677643221 122233311
Q ss_pred CCCCcccHH-----HHHHHHHHHh--ccCeEEEEEeCC
Q 038751 256 SLPNLRELN-----SLLEYIHTSI--KEKKFFLILDDV 286 (915)
Q Consensus 256 ~~~~~~~~~-----~~~~~l~~~l--~~k~~LlVlDdv 286 (915)
...+..... ...-.+.+++ +++.+||++||+
T Consensus 233 atadep~~~r~~~a~~alt~AEyfrd~G~dVLil~Dsl 270 (422)
T 3ice_A 233 STFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSI 270 (422)
T ss_dssp ECTTSCHHHHHHHHHHHHHHHHHHHHTSCEEEEEEECH
T ss_pred eCCCCCHHHHHHHHHHHHHHHHHHHhcCCCEEEEEeCc
Confidence 111111111 1111223333 589999999998
No 272
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.27 E-value=0.019 Score=54.98 Aligned_cols=22 Identities=23% Similarity=0.348 Sum_probs=20.4
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 038751 199 QIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
.+|.|+|++|+||||+|+.+.+
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999987
No 273
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=94.19 E-value=0.21 Score=50.94 Aligned_cols=22 Identities=32% Similarity=0.446 Sum_probs=20.1
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 038751 199 QIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
.+++|+|+.|+|||||.+.++.
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 4799999999999999999875
No 274
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.17 E-value=0.022 Score=54.19 Aligned_cols=20 Identities=35% Similarity=0.689 Sum_probs=18.7
Q ss_pred EEEEEEecCCCcHHHHHHHH
Q 038751 199 QIISLVGMGGIGKTTLAQFA 218 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v 218 (915)
.+|.|+|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999998
No 275
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.13 E-value=0.026 Score=54.66 Aligned_cols=24 Identities=38% Similarity=0.396 Sum_probs=21.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcc
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
-.+++|+|++|+|||||++.+...
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 368999999999999999999873
No 276
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.13 E-value=0.021 Score=54.23 Aligned_cols=22 Identities=27% Similarity=0.134 Sum_probs=20.1
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 038751 199 QIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
.+|.|.|++|+||||+|+.+..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999876
No 277
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.08 E-value=0.039 Score=57.33 Aligned_cols=81 Identities=19% Similarity=0.199 Sum_probs=43.4
Q ss_pred CceEEEEEEecCCCcHHHHHHHHhccccccc-CCCeEEEEEeCCCCCHHHHHHHHHHHh------hC-CCCCcccHHHHH
Q 038751 196 NAVQIISLVGMGGIGKTTLAQFAYNDKDVIE-NFDKRIWVCVSDPFDEFRIAKAIIEGL------EG-SLPNLRELNSLL 267 (915)
Q Consensus 196 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F~~~~wv~vs~~~~~~~~~~~i~~~l------~~-~~~~~~~~~~~~ 267 (915)
....+|+|+|..|+||||||+.+.......+ .......|+...-+-.......+.... .. ..++..+.+.+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~~~~g~p~a~d~~~l~ 108 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDMKLLQ 108 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSCSTTSBCHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHHhccccccchhhhccCcchhHHHHHH
Confidence 3568999999999999999988876322111 123344445444333333333332221 10 124445566666
Q ss_pred HHHHHHhcc
Q 038751 268 EYIHTSIKE 276 (915)
Q Consensus 268 ~~l~~~l~~ 276 (915)
+.+.....+
T Consensus 109 ~~l~~l~~g 117 (290)
T 1odf_A 109 EVLNTIFNN 117 (290)
T ss_dssp HHHHHHTC-
T ss_pred HHHHHhhcc
Confidence 655554433
No 278
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.05 E-value=0.047 Score=56.81 Aligned_cols=25 Identities=28% Similarity=0.376 Sum_probs=22.2
Q ss_pred CceEEEEEEecCCCcHHHHHHHHhc
Q 038751 196 NAVQIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 196 ~~~~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
....+|.|.|++|+||||+|+.+..
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999999876
No 279
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=93.96 E-value=0.011 Score=57.13 Aligned_cols=22 Identities=23% Similarity=0.067 Sum_probs=18.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 038751 199 QIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
.++.|+|+.|+||||++..+..
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~ 25 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVE 25 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999955544
No 280
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=93.94 E-value=0.024 Score=55.41 Aligned_cols=23 Identities=39% Similarity=0.377 Sum_probs=21.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
..+|.|+|++|+||||+|+.+..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 281
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.89 E-value=0.028 Score=53.75 Aligned_cols=22 Identities=36% Similarity=0.424 Sum_probs=20.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 038751 199 QIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999886
No 282
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.88 E-value=0.025 Score=54.30 Aligned_cols=22 Identities=18% Similarity=0.471 Sum_probs=20.4
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 038751 199 QIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
++++|+|+.|+|||||++.+..
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5899999999999999999876
No 283
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=93.84 E-value=0.29 Score=51.48 Aligned_cols=52 Identities=13% Similarity=0.079 Sum_probs=37.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGL 253 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 253 (915)
-.++.|.|.+|+||||||..++.....++ ..++|++.. .+..++...++...
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~~ 119 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVTA 119 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHHH
Confidence 46899999999999999988775432222 567777665 56777777776654
No 284
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=93.83 E-value=0.18 Score=52.60 Aligned_cols=88 Identities=16% Similarity=0.158 Sum_probs=46.7
Q ss_pred ceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHH--HHHHHHHHHhhCCC---CCcccHHHH-HHHH
Q 038751 197 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEF--RIAKAIIEGLEGSL---PNLRELNSL-LEYI 270 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~--~~~~~i~~~l~~~~---~~~~~~~~~-~~~l 270 (915)
...+|.|+|.+|+||||++..++.... ..-..+.++... .+... +-+....+..+... ....+...+ ...+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~--~~g~kV~lv~~D-~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al 179 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFV--DEGKSVVLAAAD-TFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAV 179 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEEEEC-TTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHH--hcCCEEEEEccc-cccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 468999999999999999988876322 111234444432 23322 22233444433211 111122222 3345
Q ss_pred HHHhccCeEEEEEeCCC
Q 038751 271 HTSIKEKKFFLILDDVW 287 (915)
Q Consensus 271 ~~~l~~k~~LlVlDdvw 287 (915)
...+....-++|+|..-
T Consensus 180 ~~a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 180 AHALARNKDVVIIDTAG 196 (306)
T ss_dssp HHHHHTTCSEEEEEECC
T ss_pred HHHHhcCCCEEEEECCC
Confidence 55455555588889763
No 285
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.83 E-value=0.031 Score=54.65 Aligned_cols=25 Identities=32% Similarity=0.331 Sum_probs=22.1
Q ss_pred ceEEEEEEecCCCcHHHHHHHHhcc
Q 038751 197 AVQIISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
...+|+|+|++|+||||+|+.+...
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3579999999999999999998873
No 286
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=93.81 E-value=0.04 Score=59.66 Aligned_cols=50 Identities=28% Similarity=0.261 Sum_probs=35.7
Q ss_pred ccccchHHHHHHHHHHhccc---------ccccCceEEEEEEecCCCcHHHHHHHHhcc
Q 038751 172 DVRGRDEEKNILKRKLLCES---------NEERNAVQIISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 172 ~~~Gr~~~~~~l~~~L~~~~---------~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
.++|.+..++.+...+...- .......+.|.++|++|+|||++|+.+++.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 37898888888888773110 000113456889999999999999999873
No 287
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=93.75 E-value=0.51 Score=51.43 Aligned_cols=108 Identities=11% Similarity=0.168 Sum_probs=68.7
Q ss_pred ccCccCccEEEEcCcCCCCCCCCCCCCCCcceeeccccccceEeCccccCCcccccccccccCCCcccccCcccceeeec
Q 038751 749 IGSLNKLKMLTLNSFVKCEIMPPLGKLPSLEILRIWHMRSVKRVGDEFLGMEISDHIHIHGTSSSSSVIAFPKLQKLELT 828 (915)
Q Consensus 749 ~~~l~~L~~L~L~~~~~~~~l~~l~~Lp~L~~L~L~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~f~~L~~L~l~ 828 (915)
+..+.+|+.+.+.+....-.-..+..+++|+.+.+.. .++.++...+ .++.+|+.+.+.
T Consensus 261 F~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~--~i~~I~~~aF-------------------~~c~~L~~i~lp 319 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSS--RITELPESVF-------------------AGCISLKSIDIP 319 (394)
T ss_dssp TTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTT-------------------TTCTTCCEEECC
T ss_pred eeecccccEEecccccceecCcccccccccccccCCC--cccccCceee-------------------cCCCCcCEEEeC
Confidence 3456778888775432111112355677888887743 4666665433 356788888875
Q ss_pred CcccccccccCCCCcccCcccceeecccCccccCCC-cCCCCCCCcCeEeEcCCcc
Q 038751 829 GMDELEEWDFGNDDITIMPHIKSLYITYCEKLKSLP-ELLLRSTTLESLTIFGVPI 883 (915)
Q Consensus 829 ~~~~l~~~~~~~~~~~~lp~L~~L~l~~c~~L~~lp-~~l~~l~~L~~L~l~~c~~ 883 (915)
+ +++.+. ...+..+.+|+.+.|.+ .++.++ ..+.++++|+.+++.+...
T Consensus 320 ~--~v~~I~--~~aF~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~~~~ 369 (394)
T 4gt6_A 320 E--GITQIL--DDAFAGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSGSRS 369 (394)
T ss_dssp T--TCCEEC--TTTTTTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESSCHH
T ss_pred C--cccEeh--HhHhhCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECCcee
Confidence 4 344433 23355778899999864 377786 4577899999999987643
No 288
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.71 E-value=0.049 Score=55.56 Aligned_cols=40 Identities=25% Similarity=0.202 Sum_probs=28.4
Q ss_pred HHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhc
Q 038751 180 KNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 180 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
.+++...+..... ......+|.|+|++|+||||+|+.+..
T Consensus 15 ~~~~~~~~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 15 LARNLRSLTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp HHHHHHHHHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred HHHHHHHHHccCC-cccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3444444443322 234567899999999999999999876
No 289
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.56 E-value=0.027 Score=53.51 Aligned_cols=22 Identities=36% Similarity=0.412 Sum_probs=20.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 038751 199 QIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
.+|+|+|+.|+||||+++.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999886
No 290
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.55 E-value=0.031 Score=53.85 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=20.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
.+.|.|+|++|+||||+|+.+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35788999999999999999976
No 291
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.43 E-value=0.042 Score=53.22 Aligned_cols=23 Identities=35% Similarity=0.375 Sum_probs=21.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
..+|.|.|++|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 292
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.43 E-value=0.039 Score=53.41 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=20.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 038751 199 QIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
.+|.|.|++|+||||+|+.+.+
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999987
No 293
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=93.38 E-value=0.069 Score=56.47 Aligned_cols=45 Identities=22% Similarity=0.158 Sum_probs=31.3
Q ss_pred ccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhc
Q 038751 174 RGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 174 ~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
++.+.-.+++++.+...-. .+....|.|+|++|+||||+++.++.
T Consensus 2 ~~~~~L~~~il~~l~~~i~--~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIE--DNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTT--TCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhc--cCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 3444556666666643221 23456789999999999999998876
No 294
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.38 E-value=0.04 Score=52.32 Aligned_cols=23 Identities=30% Similarity=0.665 Sum_probs=20.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
-.+++|+|+.|+|||||++..+.
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHSC
T ss_pred CEEEEEECCCCCCHHHHHHHHcc
Confidence 46899999999999999997554
No 295
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.33 E-value=0.027 Score=54.06 Aligned_cols=22 Identities=32% Similarity=0.496 Sum_probs=19.5
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 038751 199 QIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
+.|.|+|++|+|||||++.+..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3478999999999999999876
No 296
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.26 E-value=0.043 Score=52.29 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=21.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
..+|+|+|+.|+||||+++.+..
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 297
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.20 E-value=0.038 Score=52.27 Aligned_cols=24 Identities=38% Similarity=0.411 Sum_probs=20.8
Q ss_pred ceEEEEEEecCCCcHHHHHHHHhc
Q 038751 197 AVQIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
...+|.|.|+.|+||||+|+.+..
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999999876
No 298
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=93.16 E-value=0.17 Score=51.00 Aligned_cols=39 Identities=23% Similarity=0.267 Sum_probs=27.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCC
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSD 238 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 238 (915)
-.++.|+|.+|+||||||..++.... ..=..++|++...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~--~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGL--KMGEPGIYVALEE 61 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHH--HTTCCEEEEESSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEEccC
Confidence 35899999999999999977755321 1123567776554
No 299
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.14 E-value=0.21 Score=52.83 Aligned_cols=53 Identities=11% Similarity=0.024 Sum_probs=37.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhh
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLE 254 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 254 (915)
-.++.|.|.+|+||||||..++..... .=..++|++. +.+..++...++....
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSl--Ems~~ql~~Rlls~~~ 98 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSL--EMSAEQLALRALSDLT 98 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEES--SSCHHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeC--CCCHHHHHHHHHHHhh
Confidence 368999999999999999888764322 1134566554 4567788777776554
No 300
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.14 E-value=0.04 Score=53.90 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=21.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
..+|+|+|+.|+|||||++.+..
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999976
No 301
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.12 E-value=0.13 Score=56.44 Aligned_cols=98 Identities=15% Similarity=0.109 Sum_probs=54.0
Q ss_pred HHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCC-HHHHHHHHHHHhh-------
Q 038751 183 LKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFD-EFRIAKAIIEGLE------- 254 (915)
Q Consensus 183 l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~i~~~l~------- 254 (915)
.++.|..-.. -+.++|+|.+|+|||||++.+...... .+-+..+++-+++... ..++.+++...-.
T Consensus 141 ~ID~L~pi~k-----Gq~~~i~G~sGvGKTtL~~~l~~~~~~-~~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv 214 (473)
T 1sky_E 141 VVDLLAPYIK-----GGKIGLFGGAGVGKTVLIQELIHNIAQ-EHGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMV 214 (473)
T ss_dssp HHHHHSCEET-----TCEEEEECCSSSCHHHHHHHHHHHHHH-HTCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEE
T ss_pred HHHHHhhhcc-----CCEEEEECCCCCCccHHHHHHHhhhhh-ccCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEE
Confidence 4566654321 135889999999999999988774222 2224556777776543 3344444433200
Q ss_pred -CCCCCcccHHH----HHHHHHHHh---ccCeEEEEEeCC
Q 038751 255 -GSLPNLRELNS----LLEYIHTSI---KEKKFFLILDDV 286 (915)
Q Consensus 255 -~~~~~~~~~~~----~~~~l~~~l---~~k~~LlVlDdv 286 (915)
....+...... ..-.+.+++ ++++.|+++||+
T Consensus 215 ~~~~~d~pg~r~~~~~~~ltiAEyFrd~~G~~VLl~~D~i 254 (473)
T 1sky_E 215 FGQMNEPPGARMRVALTGLTMAEYFRDEQGQDGLLFIDNI 254 (473)
T ss_dssp EECTTSCHHHHHHHHHHHHHHHHHHHHHSCCEEEEEEECT
T ss_pred EEcCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccH
Confidence 01111111111 111333443 478999999999
No 302
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=93.11 E-value=0.6 Score=51.07 Aligned_cols=24 Identities=33% Similarity=0.398 Sum_probs=21.2
Q ss_pred ceEEEEEEecCCCcHHHHHHHHhc
Q 038751 197 AVQIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
...+|.++|.+|+||||++..++.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHH
Confidence 468999999999999999977765
No 303
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=93.09 E-value=0.51 Score=55.82 Aligned_cols=100 Identities=16% Similarity=0.190 Sum_probs=57.6
Q ss_pred cccCccccchHHHHHHHHHHhcccc-------cccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCC
Q 038751 168 INVSDVRGRDEEKNILKRKLLCESN-------EERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPF 240 (915)
Q Consensus 168 ~~~~~~~Gr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~ 240 (915)
+.-.++.|-++.+++|.+.+.-+-. .+-...+-|.++|++|+|||.+|+++++.. ... ++.++.
T Consensus 474 v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~--~~~-----f~~v~~-- 544 (806)
T 3cf2_A 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC--QAN-----FISIKG-- 544 (806)
T ss_dssp CCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTT--TCE-----EEECCH--
T ss_pred CCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHh--CCc-----eEEecc--
Confidence 3345678888888887776543211 012234567899999999999999999842 222 233321
Q ss_pred CHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHhccCeEEEEEeCCC
Q 038751 241 DEFRIAKAIIEGLEGSLPNLRELNSLLEYIHTSIKEKKFFLILDDVW 287 (915)
Q Consensus 241 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw 287 (915)
.+++ ....+. ....+...+...-+..+.+|++|++.
T Consensus 545 ------~~l~----s~~vGe-se~~vr~lF~~Ar~~~P~IifiDEiD 580 (806)
T 3cf2_A 545 ------PELL----TMWFGE-SEANVREIFDKARQAAPCVLFFDELD 580 (806)
T ss_dssp ------HHHH----TTTCSS-CHHHHHHHHHHHHTTCSEEEECSCGG
T ss_pred ------chhh----ccccch-HHHHHHHHHHHHHHcCCceeechhhh
Confidence 1111 111121 22233333334435678999999983
No 304
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=93.02 E-value=0.037 Score=54.24 Aligned_cols=23 Identities=22% Similarity=0.401 Sum_probs=20.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
..+|.|.|+.|+||||+|+.+..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999876
No 305
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.01 E-value=0.053 Score=53.01 Aligned_cols=24 Identities=33% Similarity=0.405 Sum_probs=22.1
Q ss_pred ceEEEEEEecCCCcHHHHHHHHhc
Q 038751 197 AVQIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
...+|+|+|+.|+||||+|+.+..
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 567999999999999999999987
No 306
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.00 E-value=0.051 Score=52.53 Aligned_cols=22 Identities=23% Similarity=0.404 Sum_probs=20.1
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 038751 199 QIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
.+++|+|+.|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999975
No 307
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.00 E-value=0.051 Score=53.60 Aligned_cols=24 Identities=38% Similarity=0.346 Sum_probs=21.5
Q ss_pred ceEEEEEEecCCCcHHHHHHHHhc
Q 038751 197 AVQIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
...+|+|+|+.|+|||||++.+..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999876
No 308
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=92.99 E-value=0.056 Score=53.11 Aligned_cols=24 Identities=38% Similarity=0.423 Sum_probs=21.6
Q ss_pred ceEEEEEEecCCCcHHHHHHHHhc
Q 038751 197 AVQIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
...+|+|+|++|+||||+|+.+..
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999876
No 309
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=92.96 E-value=0.045 Score=53.88 Aligned_cols=24 Identities=33% Similarity=0.566 Sum_probs=21.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcc
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
..+|+|+|+.|+|||||++.+...
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 468999999999999999998863
No 310
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=92.95 E-value=0.048 Score=53.47 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=20.4
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 038751 199 QIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
.+++|+|+.|+|||||++.+..
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHh
Confidence 5899999999999999999876
No 311
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=92.93 E-value=0.046 Score=52.81 Aligned_cols=22 Identities=32% Similarity=0.676 Sum_probs=20.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 038751 199 QIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
.+|.|.|++|+||||+|+.+.+
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999887
No 312
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=92.85 E-value=0.038 Score=52.93 Aligned_cols=23 Identities=39% Similarity=0.482 Sum_probs=20.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
.++|.|+|++|+||||+|+.+.+
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 45788999999999999999886
No 313
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=92.84 E-value=0.039 Score=53.21 Aligned_cols=22 Identities=32% Similarity=0.496 Sum_probs=20.1
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 038751 199 QIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
++++|+|+.|+|||||++.+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4789999999999999999876
No 314
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=92.82 E-value=0.21 Score=53.37 Aligned_cols=111 Identities=15% Similarity=0.227 Sum_probs=58.9
Q ss_pred EEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHH-HHHHHHHHhhCCCCCcccHHHHHHHHHHHhccC
Q 038751 199 QIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFR-IAKAIIEGLEGSLPNLRELNSLLEYIHTSIKEK 277 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~-~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 277 (915)
.++.|+|+.|+|||||.+.+... ........+ +++.+...... -...++.+... ..+.......+...|...
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~--~~~~~~~~i-~t~ed~~e~~~~~~~~~v~q~~~----~~~~~~~~~~La~aL~~~ 196 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDY--LNNTKYHHI-LTIEDPIEFVHESKKCLVNQREV----HRDTLGFSEALRSALRED 196 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH--HHHHCCCEE-EEEESSCCSCCCCSSSEEEEEEB----TTTBSCHHHHHHHHTTSC
T ss_pred CEEEEECCCCCCHHHHHHHHHhc--ccCCCCcEE-EEccCcHHhhhhccccceeeeee----ccccCCHHHHHHHHhhhC
Confidence 58999999999999999988662 211111222 22222211000 00000000000 001123445788888888
Q ss_pred eEEEEEeCCCCCCccChhhhHHhhhcCCCCceEEEEcCchHHHh
Q 038751 278 KFFLILDDVWPDDYSKWEPFHNCLMNGLCGSRILVTTRKETVAR 321 (915)
Q Consensus 278 ~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~ 321 (915)
+=+|++|++- +.+.++.+.... ..|.-||+|+-..+.+.
T Consensus 197 PdvillDEp~--d~e~~~~~~~~~---~~G~~vl~t~H~~~~~~ 235 (356)
T 3jvv_A 197 PDIILVGEMR--DLETIRLALTAA---ETGHLVFGTLHTTSAAK 235 (356)
T ss_dssp CSEEEESCCC--SHHHHHHHHHHH---HTTCEEEEEESCSSHHH
T ss_pred cCEEecCCCC--CHHHHHHHHHHH---hcCCEEEEEEccChHHH
Confidence 9999999994 444444433332 23666888887655443
No 315
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=92.80 E-value=0.5 Score=51.81 Aligned_cols=99 Identities=16% Similarity=0.083 Sum_probs=60.0
Q ss_pred HHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCC-CHHHHHHHHHHHhhCC----
Q 038751 182 ILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPF-DEFRIAKAIIEGLEGS---- 256 (915)
Q Consensus 182 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~---- 256 (915)
++++.|..-. .-..++|+|.+|+|||+|++.+.+.. .+.+-+.++++-+++.. .+.++.+++...-...
T Consensus 142 r~ID~l~pig-----kGQr~~Ifgg~G~GKT~L~~~i~~~~-~~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~ 215 (482)
T 2ck3_D 142 KVVDLLAPYA-----KGGKIGLFGGAGVGKTVLIMELINNV-AKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDA 215 (482)
T ss_dssp HHHHHHSCEE-----TTCEEEEEECTTSSHHHHHHHHHHHT-TTTCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSS
T ss_pred EEEecccccc-----cCCeeeeecCCCCChHHHHHHHHHhh-HhhCCCEEEEEECCCcchHHHHHHHHhhhccccccccC
Confidence 5667776542 23568999999999999998887731 22344667888888764 3456666665542111
Q ss_pred ---------CCCcccHH-----HHHHHHHHHh---ccCeEEEEEeCC
Q 038751 257 ---------LPNLRELN-----SLLEYIHTSI---KEKKFFLILDDV 286 (915)
Q Consensus 257 ---------~~~~~~~~-----~~~~~l~~~l---~~k~~LlVlDdv 286 (915)
..+..... ...-.+.+++ +++.+||++||+
T Consensus 216 ~~rtvvV~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~dVLll~Dsi 262 (482)
T 2ck3_D 216 TSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNI 262 (482)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECT
T ss_pred CceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccH
Confidence 01111111 1222333444 478999999998
No 316
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=92.79 E-value=0.049 Score=51.23 Aligned_cols=25 Identities=32% Similarity=0.331 Sum_probs=21.6
Q ss_pred ceEEEEEEecCCCcHHHHHHHHhcc
Q 038751 197 AVQIISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
..+++.|+|..|+|||||+..+...
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4678999999999999999988873
No 317
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=92.74 E-value=0.053 Score=55.24 Aligned_cols=23 Identities=22% Similarity=0.166 Sum_probs=20.6
Q ss_pred EEEEEEecCCCcHHHHHHHHhcc
Q 038751 199 QIISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
.+|.|+|+.|+||||||+.+...
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhc
Confidence 47899999999999999998763
No 318
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=92.72 E-value=0.043 Score=53.87 Aligned_cols=24 Identities=25% Similarity=0.434 Sum_probs=21.3
Q ss_pred ceEEEEEEecCCCcHHHHHHHHhc
Q 038751 197 AVQIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
...+|.|+|++|+||||+++.+..
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999876
No 319
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=92.71 E-value=0.061 Score=52.65 Aligned_cols=24 Identities=29% Similarity=0.357 Sum_probs=21.8
Q ss_pred ceEEEEEEecCCCcHHHHHHHHhc
Q 038751 197 AVQIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
...+|.|.|+.|+||||+|+.+.+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999876
No 320
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=92.70 E-value=0.054 Score=53.08 Aligned_cols=22 Identities=41% Similarity=0.486 Sum_probs=19.9
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 038751 199 QIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
.+|+|+|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3699999999999999999876
No 321
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=92.68 E-value=0.052 Score=53.11 Aligned_cols=21 Identities=29% Similarity=0.415 Sum_probs=19.5
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 038751 200 IISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~ 220 (915)
.|+|.|+.|+||||+|+.+.+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999999887
No 322
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=92.60 E-value=0.045 Score=53.44 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=20.1
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 038751 199 QIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
++++|+|+.|+|||||++.+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5789999999999999998876
No 323
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=92.59 E-value=0.054 Score=53.11 Aligned_cols=22 Identities=32% Similarity=0.567 Sum_probs=20.4
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 038751 199 QIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
.+|+|+|+.|+||||+++.+..
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~ 28 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFE 28 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999876
No 324
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=92.57 E-value=0.054 Score=54.07 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=20.2
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 038751 199 QIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
.+|+|+|+.|+||||+|+.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999876
No 325
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=92.55 E-value=0.061 Score=56.55 Aligned_cols=24 Identities=29% Similarity=0.524 Sum_probs=20.6
Q ss_pred ceEEEEEEecCCCcHHHHHHHHhc
Q 038751 197 AVQIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
+.+||+|+|-|||||||.+-.+..
T Consensus 47 ~aKVIAIaGKGGVGKTTtavNLA~ 70 (314)
T 3fwy_A 47 GAKVFAVYGKGGIGKSTTSSNLSA 70 (314)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCccCHHHHHHHHHH
Confidence 579999999999999999866544
No 326
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=92.55 E-value=0.047 Score=51.99 Aligned_cols=22 Identities=36% Similarity=0.502 Sum_probs=19.9
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 038751 199 QIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
+.|.|+|++|+||||+|+.+..
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3589999999999999999986
No 327
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=92.55 E-value=0.06 Score=52.17 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=20.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
..+|.|.|++|+||||+|+.+.+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999998876
No 328
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=92.54 E-value=0.056 Score=52.03 Aligned_cols=23 Identities=30% Similarity=0.380 Sum_probs=20.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
...|.|+|+.|+||||+|+.+.+
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999876
No 329
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=92.50 E-value=0.17 Score=49.14 Aligned_cols=20 Identities=30% Similarity=0.297 Sum_probs=17.2
Q ss_pred EEEEEEecCCCcHHHHHHHH
Q 038751 199 QIISLVGMGGIGKTTLAQFA 218 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v 218 (915)
-++.|+|.+|.|||++|...
T Consensus 6 mi~l~tG~pGsGKT~~a~~~ 25 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSM 25 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHH
Confidence 36789999999999999664
No 330
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=92.50 E-value=0.058 Score=52.36 Aligned_cols=23 Identities=35% Similarity=0.359 Sum_probs=20.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
..+|.|.|++|+||||+|+.+.+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 331
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.49 E-value=0.11 Score=51.78 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=21.9
Q ss_pred ceEEEEEEecCCCcHHHHHHHHhcc
Q 038751 197 AVQIISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
...+|.|+|.+|+|||||+..+...
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4688999999999999999888764
No 332
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=92.49 E-value=0.065 Score=52.57 Aligned_cols=22 Identities=41% Similarity=0.514 Sum_probs=20.1
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 038751 199 QIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999875
No 333
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=92.48 E-value=0.44 Score=52.01 Aligned_cols=24 Identities=38% Similarity=0.289 Sum_probs=20.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcc
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
..+|.|+|.+|+||||++..++..
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~ 121 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALY 121 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 478999999999999999887763
No 334
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=92.48 E-value=0.062 Score=55.04 Aligned_cols=23 Identities=30% Similarity=0.599 Sum_probs=21.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
..+|.|+|++|+||||+|+.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999886
No 335
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=92.44 E-value=0.073 Score=51.25 Aligned_cols=25 Identities=32% Similarity=0.341 Sum_probs=22.0
Q ss_pred ceEEEEEEecCCCcHHHHHHHHhcc
Q 038751 197 AVQIISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
...+|.|+|++|+||||+++.+...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999998874
No 336
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=92.40 E-value=0.058 Score=52.22 Aligned_cols=24 Identities=17% Similarity=0.491 Sum_probs=21.2
Q ss_pred ceEEEEEEecCCCcHHHHHHHHhc
Q 038751 197 AVQIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
..++|+|+|+.|+|||||++.+..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHh
Confidence 346899999999999999998876
No 337
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=92.38 E-value=0.49 Score=52.04 Aligned_cols=24 Identities=25% Similarity=0.329 Sum_probs=21.2
Q ss_pred ceEEEEEEecCCCcHHHHHHHHhc
Q 038751 197 AVQIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
..++|.|+|.+|+||||++..+..
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~ 122 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGK 122 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 568999999999999999977765
No 338
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=92.35 E-value=0.34 Score=53.34 Aligned_cols=99 Identities=16% Similarity=0.081 Sum_probs=60.7
Q ss_pred HHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCC-HHHHHHHHHHHhhCC----
Q 038751 182 ILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFD-EFRIAKAIIEGLEGS---- 256 (915)
Q Consensus 182 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~i~~~l~~~---- 256 (915)
++++.|..-. .-..++|.|.+|+|||+|++.+.+.. .+.+-+.++++-+++... ..++.+++...-...
T Consensus 154 rvID~l~pig-----kGqr~gIfgg~GvGKT~L~~~l~~~~-a~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l 227 (498)
T 1fx0_B 154 KVVNLLAPYR-----RGGKIGLFGGAGVGKTVLIMELINNI-AKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNI 227 (498)
T ss_dssp TTHHHHSCCC-----TTCCEEEEECSSSSHHHHHHHHHHHT-TTTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTT
T ss_pred eEeeeecccc-----cCCeEEeecCCCCCchHHHHHHHHHH-HhhCCCEEEEEEcccCcHHHHHHHHhhhcccccccccc
Confidence 4566665542 22458999999999999998887731 233457788888887654 456666665431111
Q ss_pred ---C-------CCccc-----HHHHHHHHHHHhc---cCeEEEEEeCC
Q 038751 257 ---L-------PNLRE-----LNSLLEYIHTSIK---EKKFFLILDDV 286 (915)
Q Consensus 257 ---~-------~~~~~-----~~~~~~~l~~~l~---~k~~LlVlDdv 286 (915)
. .+... .....-.+.+++. ++.+|+++||+
T Consensus 228 ~~~rtvvV~~t~d~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~Dsi 275 (498)
T 1fx0_B 228 AESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNI 275 (498)
T ss_dssp CCCCEEEEEECTTSCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECS
T ss_pred cccceEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccH
Confidence 0 01110 1122333445553 68999999998
No 339
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=92.31 E-value=0.53 Score=49.60 Aligned_cols=25 Identities=36% Similarity=0.335 Sum_probs=22.1
Q ss_pred ceEEEEEEecCCCcHHHHHHHHhcc
Q 038751 197 AVQIISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
...+++|+|+.|+||||+++.+..-
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~ 152 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANW 152 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4589999999999999999888763
No 340
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=92.29 E-value=0.046 Score=52.54 Aligned_cols=22 Identities=32% Similarity=0.436 Sum_probs=19.9
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 038751 199 QIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
.+|.|+|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999876
No 341
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=92.26 E-value=0.075 Score=51.07 Aligned_cols=22 Identities=32% Similarity=0.330 Sum_probs=20.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 038751 199 QIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
..|.|.|++|+||||+|+.+.+
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999876
No 342
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=92.23 E-value=0.075 Score=52.41 Aligned_cols=26 Identities=23% Similarity=0.290 Sum_probs=23.0
Q ss_pred CceEEEEEEecCCCcHHHHHHHHhcc
Q 038751 196 NAVQIISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 196 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
...++|.|.|++|+||||.|+.+.+.
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 36789999999999999999998873
No 343
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=92.18 E-value=0.074 Score=51.38 Aligned_cols=23 Identities=22% Similarity=0.254 Sum_probs=21.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
..+|.|.|++|+||||+|+.+.+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 344
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=92.16 E-value=0.08 Score=49.36 Aligned_cols=23 Identities=35% Similarity=0.355 Sum_probs=20.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
-.+++|+|+.|.|||||++.+..
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 345
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=92.13 E-value=0.1 Score=51.81 Aligned_cols=40 Identities=18% Similarity=0.187 Sum_probs=28.5
Q ss_pred chHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcc
Q 038751 176 RDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 176 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
.++..+.+.+.+.. ....+|.|+|.+|+|||||+..+...
T Consensus 14 ~~~~~~~~~~~~~~------~~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 14 NKRLAEKNREALRE------SGTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp HHHHHHHHHHHHHH------HTCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred cHHHHHHHHHhhcc------cCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 33445555554422 25689999999999999999888764
No 346
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=92.10 E-value=0.054 Score=51.39 Aligned_cols=22 Identities=32% Similarity=0.363 Sum_probs=20.0
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 038751 199 QIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
.+|.|.|+.|+||||+|+.+.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999876
No 347
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=92.09 E-value=0.072 Score=52.37 Aligned_cols=23 Identities=22% Similarity=0.420 Sum_probs=20.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
-.+++|+|+.|+|||||++.+..
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 36899999999999999999876
No 348
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=92.07 E-value=0.072 Score=51.82 Aligned_cols=23 Identities=30% Similarity=0.378 Sum_probs=20.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
..+|.|.|++|+||||+|+.+.+
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999876
No 349
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.07 E-value=0.079 Score=55.69 Aligned_cols=24 Identities=29% Similarity=0.346 Sum_probs=21.8
Q ss_pred ceEEEEEEecCCCcHHHHHHHHhc
Q 038751 197 AVQIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
...+|+|+|..|+|||||++.+..
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHh
Confidence 457999999999999999998876
No 350
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=92.07 E-value=0.41 Score=52.35 Aligned_cols=25 Identities=44% Similarity=0.304 Sum_probs=21.6
Q ss_pred ceEEEEEEecCCCcHHHHHHHHhcc
Q 038751 197 AVQIISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
...+|.++|.+|+||||++..+...
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~ 120 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYF 120 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999887753
No 351
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=92.00 E-value=0.076 Score=52.27 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=20.9
Q ss_pred EEEEEEecCCCcHHHHHHHHhcc
Q 038751 199 QIISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
.+|.|.|++|+||||+|+.+.+.
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 57999999999999999999873
No 352
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=91.99 E-value=0.073 Score=50.18 Aligned_cols=21 Identities=29% Similarity=0.369 Sum_probs=19.4
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 038751 200 IISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~ 220 (915)
.|.|.|+.|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999876
No 353
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=91.94 E-value=0.075 Score=53.89 Aligned_cols=23 Identities=26% Similarity=0.273 Sum_probs=20.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
..+|+|+|+.|+|||||++.+.+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999984
No 354
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=91.91 E-value=0.093 Score=50.77 Aligned_cols=25 Identities=28% Similarity=0.437 Sum_probs=22.4
Q ss_pred CceEEEEEEecCCCcHHHHHHHHhc
Q 038751 196 NAVQIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 196 ~~~~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
....+|+|+|+.|+||||+|+.+.+
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999999999876
No 355
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=91.89 E-value=0.13 Score=52.07 Aligned_cols=24 Identities=21% Similarity=0.112 Sum_probs=21.6
Q ss_pred ceEEEEEEecCCCcHHHHHHHHhc
Q 038751 197 AVQIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
...+|.|.|++|+||||+|+.+.+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999876
No 356
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=91.88 E-value=0.014 Score=56.47 Aligned_cols=94 Identities=15% Similarity=0.055 Sum_probs=59.5
Q ss_pred hHhhccCCCCCCceEEEEecCCCCchhhhhhhhhHHHHhhHHHHHhhcCCCCCcceEEEeeeCCCC-----CCCcccCcc
Q 038751 679 KNAHLEKKKNLIDLILIFNEREESDDEKASEEMNEEKEAKHEAVCEALRPPPDIKSLEIMVFKGRT-----PSNWIGSLN 753 (915)
Q Consensus 679 ~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-----~p~~~~~l~ 753 (915)
....+...++|++|+|++|.... . ....+.+.+...++|++|++++|.... +...+...+
T Consensus 57 l~~~L~~~~~L~~L~Ls~n~i~~----------~-----g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~ 121 (185)
T 1io0_A 57 CAEALKTNTYVKKFSIVGTRSND----------P-----VAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNT 121 (185)
T ss_dssp HHHHHTTCCSCCEEECTTSCCCH----------H-----HHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCS
T ss_pred HHHHHHhCCCcCEEECcCCCCCh----------H-----HHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCC
Confidence 34456667889999998876431 0 223345556667789999998887543 233455677
Q ss_pred CccEEEE--cCcCCCC-C---C-CCCCCCCCcceeeccccc
Q 038751 754 KLKMLTL--NSFVKCE-I---M-PPLGKLPSLEILRIWHMR 787 (915)
Q Consensus 754 ~L~~L~L--~~~~~~~-~---l-~~l~~Lp~L~~L~L~~~~ 787 (915)
+|++|+| ++|.... . + ..+...++|++|+|++|.
T Consensus 122 ~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 122 SLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp SCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred CceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 8999999 5564221 1 1 113345789999998765
No 357
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=91.87 E-value=0.075 Score=55.60 Aligned_cols=24 Identities=29% Similarity=0.414 Sum_probs=21.3
Q ss_pred ceEEEEEEecCCCcHHHHHHHHhc
Q 038751 197 AVQIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
...+++|+|++|+||||+++.+..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 346999999999999999998876
No 358
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=91.87 E-value=0.085 Score=50.40 Aligned_cols=23 Identities=30% Similarity=0.356 Sum_probs=20.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
-.+|.|+|+.|+||||+++.+..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46889999999999999999876
No 359
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=91.86 E-value=0.078 Score=51.77 Aligned_cols=23 Identities=30% Similarity=0.212 Sum_probs=20.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
..+|.|+|++|+||||+|+.+..
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999876
No 360
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=91.79 E-value=0.064 Score=53.26 Aligned_cols=22 Identities=32% Similarity=0.452 Sum_probs=20.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 038751 199 QIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
.+++|+|+.|+|||||++.+..
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5799999999999999999876
No 361
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=91.78 E-value=0.083 Score=53.75 Aligned_cols=24 Identities=17% Similarity=0.206 Sum_probs=21.7
Q ss_pred ceEEEEEEecCCCcHHHHHHHHhc
Q 038751 197 AVQIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
...+|+|.|+.|+||||+|+.+..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999998876
No 362
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=91.77 E-value=0.39 Score=49.90 Aligned_cols=88 Identities=19% Similarity=0.063 Sum_probs=45.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCC-CHHHHHHHHHHHhhCC---CCCcccHHHHHHHHHHH
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPF-DEFRIAKAIIEGLEGS---LPNLRELNSLLEYIHTS 273 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~---~~~~~~~~~~~~~l~~~ 273 (915)
..++.++|.+|+||||++..+..... ..=..+.++...... ...+.++...+..+.. .....+...+.....+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~--~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~ 175 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYK--KKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEK 175 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHH--HTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHH
Confidence 57899999999999999988776322 111234555543322 2223334444443322 11112333443333333
Q ss_pred hc-cCeEEEEEeCCC
Q 038751 274 IK-EKKFFLILDDVW 287 (915)
Q Consensus 274 l~-~k~~LlVlDdvw 287 (915)
++ +.-=++++|-.-
T Consensus 176 ~~~~~~D~ViIDTpg 190 (297)
T 1j8m_F 176 FLSEKMEIIIVDTAG 190 (297)
T ss_dssp HHHTTCSEEEEECCC
T ss_pred HHhCCCCEEEEeCCC
Confidence 43 333378888763
No 363
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=91.69 E-value=0.16 Score=56.81 Aligned_cols=23 Identities=30% Similarity=0.556 Sum_probs=20.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhcc
Q 038751 199 QIISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
+.+.|.|.+|+||||++..+...
T Consensus 46 ~~~li~G~aGTGKT~ll~~~~~~ 68 (459)
T 3upu_A 46 HHVTINGPAGTGATTLTKFIIEA 68 (459)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHHHH
Confidence 38999999999999999888774
No 364
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=91.68 E-value=0.082 Score=51.16 Aligned_cols=21 Identities=43% Similarity=0.687 Sum_probs=19.6
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 038751 200 IISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~ 220 (915)
+|+|.|+.|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 365
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=91.67 E-value=0.53 Score=50.03 Aligned_cols=54 Identities=19% Similarity=0.007 Sum_probs=34.9
Q ss_pred HHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccc-cCCCeEEEEEeCCC
Q 038751 180 KNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVI-ENFDKRIWVCVSDP 239 (915)
Q Consensus 180 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~vs~~ 239 (915)
--++++.+..-. .-+.++|+|.+|+|||+|++.+.+..... ..+. ++++-+++.
T Consensus 162 GiraID~l~Pig-----rGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~-~V~~lIGER 216 (427)
T 3l0o_A 162 STRLIDLFAPIG-----KGQRGMIVAPPKAGKTTILKEIANGIAENHPDTI-RIILLIDER 216 (427)
T ss_dssp HHHHHHHHSCCB-----TTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSE-EEEEECSCC
T ss_pred cchhhhhccccc-----CCceEEEecCCCCChhHHHHHHHHHHhhcCCCeE-EEEEEeccC
Confidence 346777776542 22467899999999999998888742211 1233 345666653
No 366
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=91.66 E-value=0.061 Score=51.55 Aligned_cols=23 Identities=35% Similarity=0.326 Sum_probs=16.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
..+|.|.|++|+||||+|+.+.+
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999876
No 367
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=91.61 E-value=0.091 Score=53.22 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=20.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
..+|+|.|+.|+|||||++.+..
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998866
No 368
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=91.61 E-value=0.085 Score=53.67 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=20.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
..+|+|+|+.|+||||+++.+..
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999985
No 369
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=91.58 E-value=0.29 Score=63.37 Aligned_cols=83 Identities=16% Similarity=0.139 Sum_probs=54.3
Q ss_pred ceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhhCCCC-----CcccHHHHHHHHH
Q 038751 197 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLP-----NLRELNSLLEYIH 271 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 271 (915)
..++|.|+|++|+|||+||.++..... .+=..++|+++...++... ++.++.+.. .....++....+.
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~--~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~ 1498 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1498 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHH--TTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHH
Confidence 357899999999999999988877432 2223578888888777666 334442211 1123345555555
Q ss_pred HHh-ccCeEEEEEeCC
Q 038751 272 TSI-KEKKFFLILDDV 286 (915)
Q Consensus 272 ~~l-~~k~~LlVlDdv 286 (915)
+.. ..+.-+||+|.+
T Consensus 1499 ~lvr~~~~~lVVIDsi 1514 (2050)
T 3cmu_A 1499 ALARSGAVDVIVVDSV 1514 (2050)
T ss_dssp HHHHHTCCSEEEESCG
T ss_pred HHHhcCCCCEEEEcCh
Confidence 554 356779999998
No 370
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=91.58 E-value=0.058 Score=51.08 Aligned_cols=23 Identities=39% Similarity=0.400 Sum_probs=20.5
Q ss_pred EEEEEEecCCCcHHHHHHHHhcc
Q 038751 199 QIISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
++++|+|..|+|||||++.+..-
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999988763
No 371
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=91.58 E-value=0.081 Score=52.55 Aligned_cols=23 Identities=30% Similarity=0.268 Sum_probs=20.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
...|.|.|++|+||||+|+.+.+
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999876
No 372
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=91.57 E-value=0.055 Score=53.44 Aligned_cols=22 Identities=32% Similarity=0.524 Sum_probs=19.8
Q ss_pred EEEEEecCCCcHHHHHHHHhcc
Q 038751 200 IISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
+|+|.|..|+||||+|+.+...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999998763
No 373
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=91.57 E-value=0.81 Score=45.70 Aligned_cols=31 Identities=19% Similarity=0.251 Sum_probs=21.9
Q ss_pred HHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHH
Q 038751 180 KNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFA 218 (915)
Q Consensus 180 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v 218 (915)
.++++..+... +.+.|+|..|+||||+....
T Consensus 66 q~~~i~~i~~g--------~~~~i~g~TGsGKTt~~~~~ 96 (235)
T 3llm_A 66 ESEILEAISQN--------SVVIIRGATGCGKTTQVPQF 96 (235)
T ss_dssp HHHHHHHHHHC--------SEEEEECCTTSSHHHHHHHH
T ss_pred HHHHHHHHhcC--------CEEEEEeCCCCCcHHhHHHH
Confidence 45555555432 46899999999999876544
No 374
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=91.52 E-value=0.2 Score=48.42 Aligned_cols=22 Identities=32% Similarity=0.474 Sum_probs=19.9
Q ss_pred EEEEEecCCCcHHHHHHHHhcc
Q 038751 200 IISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
.|+|.|+.|+||||+|+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998873
No 375
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=91.52 E-value=0.085 Score=52.25 Aligned_cols=24 Identities=21% Similarity=0.253 Sum_probs=21.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcc
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
-.+++|+|+.|+|||||.+.+...
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhcc
Confidence 468999999999999999998763
No 376
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=91.40 E-value=0.094 Score=51.73 Aligned_cols=24 Identities=25% Similarity=0.289 Sum_probs=21.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcc
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
..+|.|.|+.|+||||+|+.+.+.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999873
No 377
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=91.38 E-value=0.14 Score=49.32 Aligned_cols=25 Identities=28% Similarity=0.294 Sum_probs=21.5
Q ss_pred ceEEEEEEecCCCcHHHHHHHHhcc
Q 038751 197 AVQIISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
....|.|+|.+|+|||||+..+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4557899999999999999988764
No 378
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=91.33 E-value=0.096 Score=51.54 Aligned_cols=24 Identities=21% Similarity=0.302 Sum_probs=21.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcc
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
..+|+|.|+.|+||||+|+.+.+.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999873
No 379
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=91.32 E-value=0.11 Score=53.65 Aligned_cols=24 Identities=33% Similarity=0.587 Sum_probs=21.5
Q ss_pred ceEEEEEEecCCCcHHHHHHHHhc
Q 038751 197 AVQIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
...+|+|.|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999873
No 380
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=91.20 E-value=0.21 Score=52.44 Aligned_cols=24 Identities=33% Similarity=0.385 Sum_probs=21.7
Q ss_pred ceEEEEEEecCCCcHHHHHHHHhc
Q 038751 197 AVQIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
...+|+|+|..|+|||||++.+..
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999998876
No 381
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=91.20 E-value=0.1 Score=52.16 Aligned_cols=23 Identities=22% Similarity=0.268 Sum_probs=20.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
...|.|.|++|+||||+|+.+.+
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999876
No 382
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=91.15 E-value=0.11 Score=51.05 Aligned_cols=24 Identities=33% Similarity=0.289 Sum_probs=21.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcc
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
..+|.|.|+.|+||||+|+.+...
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998763
No 383
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=91.13 E-value=0.31 Score=55.85 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=20.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhcc
Q 038751 199 QIISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
+++.|.|.+|.||||++..+...
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~ 227 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADL 227 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 67889999999999999888763
No 384
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=91.11 E-value=0.52 Score=48.94 Aligned_cols=24 Identities=38% Similarity=0.289 Sum_probs=21.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcc
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
..+++|+|.+|+||||++..++..
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~ 121 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALY 121 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999888763
No 385
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=91.06 E-value=1.2 Score=49.88 Aligned_cols=25 Identities=32% Similarity=0.396 Sum_probs=20.6
Q ss_pred CceEEEEEEecCCCcHHHHHHHHhc
Q 038751 196 NAVQIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 196 ~~~~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
...++|.|+|.+|+||||++..+..
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~ 123 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAY 123 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999988775
No 386
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=91.03 E-value=0.091 Score=50.69 Aligned_cols=22 Identities=41% Similarity=0.437 Sum_probs=19.6
Q ss_pred EEEEEecCCCcHHHHHHHHhcc
Q 038751 200 IISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
+++|+|+.|+|||||++.+...
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 6899999999999999888764
No 387
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=91.02 E-value=0.36 Score=48.66 Aligned_cols=49 Identities=20% Similarity=0.232 Sum_probs=31.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHH
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAI 249 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 249 (915)
-.++.|.|.+|+|||++|..++.+. ....-..+++++... +...+.+.+
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~-~~~~~~~v~~~s~E~--~~~~~~~~~ 78 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKG-AEEYGEPGVFVTLEE--RARDLRREM 78 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHH-HHHHCCCEEEEESSS--CHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHH-HHhcCCCceeecccC--CHHHHHHHH
Confidence 3689999999999999997765421 122223456665543 455555444
No 388
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=91.00 E-value=0.1 Score=51.52 Aligned_cols=21 Identities=38% Similarity=0.476 Sum_probs=19.0
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 038751 200 IISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~ 220 (915)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999876
No 389
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=90.97 E-value=0.21 Score=53.73 Aligned_cols=37 Identities=22% Similarity=0.304 Sum_probs=27.3
Q ss_pred HHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhc
Q 038751 180 KNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 180 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
...+.+.+... .+...+|+|+|.+|+|||||+..+..
T Consensus 65 ~~~~~~~~~~~----~~~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 65 AQQLLLRLLPD----SGNAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp HHHHHHHHGGG----CCCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHhHhh----cCCceEEEEECCCCCCHHHHHHHHHH
Confidence 44555555432 23578999999999999999988765
No 390
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=90.97 E-value=0.54 Score=52.00 Aligned_cols=42 Identities=29% Similarity=0.369 Sum_probs=28.8
Q ss_pred ceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCC
Q 038751 197 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFD 241 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 241 (915)
...+++|+|..|+|||||++.+..-. +. -...+++.-.+.+.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll--~~-~~G~V~l~g~D~~r 333 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQF--EQ-QGKSVMLAAGDTFR 333 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHH--HH-TTCCEEEECCCTTC
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHh--hh-cCCeEEEecCcccc
Confidence 45799999999999999999987632 21 13345554444444
No 391
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=90.93 E-value=0.12 Score=51.54 Aligned_cols=22 Identities=32% Similarity=0.496 Sum_probs=20.5
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 038751 199 QIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
.+++|+|+.|+|||||.+.+..
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999986
No 392
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=90.92 E-value=0.7 Score=52.25 Aligned_cols=54 Identities=11% Similarity=-0.026 Sum_probs=36.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhh
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLE 254 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 254 (915)
-.++.|.|.+|+||||||..++.+.... +=..++|++... +..++...++....
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a~~-~g~~vl~~s~E~--s~~~l~~r~~~~~~ 295 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWGTA-MGKKVGLAMLEE--SVEETAEDLIGLHN 295 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHTTT-SCCCEEEEESSS--CHHHHHHHHHHHHT
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHHHh-cCCcEEEEeccC--CHHHHHHHHHHHHc
Confidence 4688999999999999998877643222 113567776644 56677777765543
No 393
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=90.92 E-value=0.12 Score=53.86 Aligned_cols=25 Identities=32% Similarity=0.333 Sum_probs=21.9
Q ss_pred ceEEEEEEecCCCcHHHHHHHHhcc
Q 038751 197 AVQIISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
...+++|+|+.|+||||+++.++.-
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4579999999999999999988763
No 394
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=90.90 E-value=0.11 Score=51.49 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=20.0
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 038751 199 QIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
..|.|.|++|+||||+|+.+..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999976
No 395
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=90.90 E-value=0.11 Score=52.09 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=20.5
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 038751 199 QIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
.+++|+|+.|+|||||.+.+..
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 5899999999999999999986
No 396
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=90.83 E-value=0.36 Score=46.81 Aligned_cols=49 Identities=20% Similarity=0.182 Sum_probs=29.3
Q ss_pred EEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 038751 200 IISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAII 250 (915)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 250 (915)
.|+|=|..|+||||.++.+++. .+..-..+++..-.......+..+.++
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~--L~~~g~~v~~treP~~t~~~~~ir~~l 50 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQY--LEKRGKKVILKREPGGTETGEKIRKIL 50 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH--HHHCCCcEEEEECCCCCcHHHHHHHHh
Confidence 3778899999999999999874 333323344443333333334444443
No 397
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=90.83 E-value=0.093 Score=52.17 Aligned_cols=23 Identities=17% Similarity=0.182 Sum_probs=20.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
...|.|.|++|+||||+|+.+.+
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999886
No 398
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=90.81 E-value=0.17 Score=55.59 Aligned_cols=51 Identities=20% Similarity=0.257 Sum_probs=35.7
Q ss_pred CccccchHHHHHHHHHHhcc-------cc-cccCceEEEEEEecCCCcHHHHHHHHhcc
Q 038751 171 SDVRGRDEEKNILKRKLLCE-------SN-EERNAVQIISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~-------~~-~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
..++|.++.++.+...+... .. ......+-|.++|++|+||||+|+.++..
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~ 73 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL 73 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHH
Confidence 45889888888887666321 00 00113456889999999999999999873
No 399
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=90.81 E-value=0.11 Score=50.69 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=20.8
Q ss_pred EEEEEEecCCCcHHHHHHHHhcc
Q 038751 199 QIISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
..|+|.|+.|+||||+++.+.+.
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 57999999999999999999873
No 400
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=90.80 E-value=0.11 Score=52.21 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=20.6
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 038751 199 QIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
.+++|+|+.|+|||||.+.+..
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 7899999999999999999876
No 401
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=90.75 E-value=0.11 Score=51.27 Aligned_cols=21 Identities=29% Similarity=0.411 Sum_probs=19.0
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 038751 200 IISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~ 220 (915)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999876
No 402
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=90.74 E-value=0.089 Score=53.23 Aligned_cols=22 Identities=41% Similarity=0.560 Sum_probs=20.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 038751 199 QIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
.+|.|+|+.|+||||+++.+..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999986
No 403
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=90.73 E-value=0.13 Score=50.92 Aligned_cols=23 Identities=35% Similarity=0.378 Sum_probs=20.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999864
No 404
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=90.67 E-value=0.11 Score=49.14 Aligned_cols=25 Identities=24% Similarity=0.396 Sum_probs=21.9
Q ss_pred ceEEEEEEecCCCcHHHHHHHHhcc
Q 038751 197 AVQIISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
..+++.|+|..|+|||||+..+...
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHh
Confidence 3578999999999999999888763
No 405
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=90.52 E-value=0.12 Score=52.21 Aligned_cols=23 Identities=35% Similarity=0.307 Sum_probs=20.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
-.+++|+|+.|+|||||++.+..
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHH
Confidence 36899999999999999998873
No 406
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=90.51 E-value=0.16 Score=49.00 Aligned_cols=37 Identities=16% Similarity=0.072 Sum_probs=26.3
Q ss_pred HHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcc
Q 038751 180 KNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 180 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
+..+..++... +....+.|+|++|+||||+|..+++.
T Consensus 45 ~~~l~~~~~~i-----Pkkn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 45 LGALKSFLKGT-----PKKNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp HHHHHHHHHTC-----TTCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-----CcccEEEEECCCCCCHHHHHHHHHHH
Confidence 45555555321 12346899999999999999888773
No 407
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=90.46 E-value=0.11 Score=50.91 Aligned_cols=23 Identities=35% Similarity=0.303 Sum_probs=20.4
Q ss_pred EEEEEEecCCCcHHHHHHHHhcc
Q 038751 199 QIISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
.+++|+|+.|+|||||++.+..-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 57999999999999999988753
No 408
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=90.38 E-value=0.19 Score=58.42 Aligned_cols=43 Identities=23% Similarity=0.326 Sum_probs=35.5
Q ss_pred CccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcc
Q 038751 171 SDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
..++|.+..++.+...+... ..+.|+|++|+||||||+.+...
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g--------~~vll~Gp~GtGKTtlar~ia~~ 83 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK--------RHVLLIGEPGTGKSMLGQAMAEL 83 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT--------CCEEEECCTTSSHHHHHHHHHHT
T ss_pred ceEECchhhHhhccccccCC--------CEEEEEeCCCCCHHHHHHHHhcc
Confidence 46899988888877777533 46899999999999999999873
No 409
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=90.36 E-value=0.85 Score=50.55 Aligned_cols=54 Identities=9% Similarity=-0.009 Sum_probs=36.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhh
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLE 254 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 254 (915)
-.++.|.|.+|+||||||..++....... =..++|++.. .+..++...++....
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~~-g~~vl~~slE--~~~~~l~~R~~~~~~ 253 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALKE-GVGVGIYSLE--MPAAQLTLRMMCSEA 253 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTT-CCCEEEEESS--SCHHHHHHHHHHHHT
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhC-CCeEEEEECC--CCHHHHHHHHHHHHc
Confidence 36899999999999999988776432211 1246776654 456677777765443
No 410
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=90.36 E-value=0.086 Score=52.82 Aligned_cols=22 Identities=36% Similarity=0.413 Sum_probs=15.9
Q ss_pred EEEEEEecCCCcHHHHHHHHh-c
Q 038751 199 QIISLVGMGGIGKTTLAQFAY-N 220 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~-~ 220 (915)
.+++|+|+.|+|||||++.+. .
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~ 50 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEK 50 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC-
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 589999999999999999988 5
No 411
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=90.31 E-value=0.13 Score=51.19 Aligned_cols=23 Identities=17% Similarity=0.338 Sum_probs=20.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
..+|+|.|++|+||||+|+.+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999876
No 412
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=90.25 E-value=1.1 Score=48.59 Aligned_cols=46 Identities=15% Similarity=0.160 Sum_probs=33.6
Q ss_pred ccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcc
Q 038751 172 DVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 172 ~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
.++|....++++.+.+..... .... |.|.|..|+|||++|+.+...
T Consensus 138 ~~ig~s~~m~~l~~~i~~~a~---~~~~-vli~Ge~GtGK~~lAr~ih~~ 183 (387)
T 1ny5_A 138 EYVFESPKMKEILEKIKKISC---AECP-VLITGESGVGKEVVARLIHKL 183 (387)
T ss_dssp CCCCCSHHHHHHHHHHHHHTT---CCSC-EEEECSTTSSHHHHHHHHHHH
T ss_pred hhhhccHHhhHHHHHHHHhcC---CCCC-eEEecCCCcCHHHHHHHHHHh
Confidence 467777777777777655332 1233 489999999999999988763
No 413
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=90.22 E-value=1.1 Score=51.67 Aligned_cols=23 Identities=35% Similarity=0.538 Sum_probs=20.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
-.+++|+|+.|.|||||++.+..
T Consensus 369 G~~~~ivG~sGsGKSTll~~l~g 391 (582)
T 3b5x_A 369 GKTVALVGRSGSGKSTIANLFTR 391 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 36899999999999999999865
No 414
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=90.21 E-value=0.14 Score=53.94 Aligned_cols=22 Identities=32% Similarity=0.326 Sum_probs=20.5
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 038751 199 QIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
.+|+|.|+.|+||||||+.++.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 5899999999999999998886
No 415
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=90.19 E-value=0.14 Score=50.22 Aligned_cols=21 Identities=24% Similarity=0.393 Sum_probs=19.8
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 038751 200 IISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~ 220 (915)
+|+|.|+.|+||||+|+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999876
No 416
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=90.19 E-value=0.14 Score=52.65 Aligned_cols=22 Identities=32% Similarity=0.530 Sum_probs=20.2
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 038751 199 QIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
.+++|+|+.|+|||||++.+..
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 5899999999999999999865
No 417
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=90.14 E-value=0.14 Score=52.30 Aligned_cols=22 Identities=32% Similarity=0.554 Sum_probs=20.5
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 038751 199 QIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
.+++|+|+.|+|||||.+.+..
T Consensus 33 e~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999876
No 418
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=90.03 E-value=0.15 Score=49.20 Aligned_cols=25 Identities=24% Similarity=0.371 Sum_probs=21.5
Q ss_pred ceEEEEEEecCCCcHHHHHHHHhcc
Q 038751 197 AVQIISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
..-.|+|+|..|+|||||++.+...
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhcC
Confidence 3467899999999999999988764
No 419
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=89.98 E-value=0.14 Score=48.98 Aligned_cols=22 Identities=41% Similarity=0.466 Sum_probs=19.5
Q ss_pred EEEEEecCCCcHHHHHHHHhcc
Q 038751 200 IISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
-|+|+|.+|+|||||++.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998873
No 420
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=89.96 E-value=0.66 Score=51.60 Aligned_cols=51 Identities=10% Similarity=0.090 Sum_probs=34.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHHH
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIE 251 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 251 (915)
-.++.|.|.+|+||||||..++....... =..++|++... +..++...++.
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~~-g~~Vl~~s~E~--s~~~l~~r~~~ 253 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATKT-NENVAIFSLEM--SAQQLVMRMLC 253 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHHS-SCCEEEEESSS--CHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhC-CCcEEEEECCC--CHHHHHHHHHH
Confidence 36899999999999999988877433221 12467766543 45666666543
No 421
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=89.90 E-value=0.15 Score=51.28 Aligned_cols=22 Identities=41% Similarity=0.578 Sum_probs=20.5
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 038751 199 QIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
.+++|+|+.|+|||||.+.++.
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999976
No 422
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=89.89 E-value=0.19 Score=47.01 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=20.4
Q ss_pred EEEEEEecCCCcHHHHHHHHhcc
Q 038751 199 QIISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
..|+|+|.+|+|||||.+.+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999998763
No 423
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=89.89 E-value=0.16 Score=50.20 Aligned_cols=21 Identities=43% Similarity=0.436 Sum_probs=19.1
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 038751 200 IISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~ 220 (915)
.|.|.|++|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999876
No 424
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=89.86 E-value=0.15 Score=52.11 Aligned_cols=22 Identities=27% Similarity=0.638 Sum_probs=20.6
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 038751 199 QIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
.+++|+|+.|.|||||++.+..
T Consensus 38 e~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 5899999999999999999986
No 425
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=89.85 E-value=0.17 Score=54.08 Aligned_cols=25 Identities=32% Similarity=0.333 Sum_probs=22.1
Q ss_pred ceEEEEEEecCCCcHHHHHHHHhcc
Q 038751 197 AVQIISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
...+++|+|+.|+||||+++.++.-
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhh
Confidence 4579999999999999999988763
No 426
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=89.79 E-value=0.13 Score=50.55 Aligned_cols=22 Identities=36% Similarity=0.572 Sum_probs=20.2
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 038751 199 QIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
.+++|+|+.|+|||||.+.++.
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5799999999999999999876
No 427
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=89.79 E-value=0.16 Score=51.88 Aligned_cols=22 Identities=23% Similarity=0.469 Sum_probs=20.5
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 038751 199 QIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
.+++|+|+.|+|||||++.+..
T Consensus 51 ei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEEcCCCCcHHHHHHHHHc
Confidence 5899999999999999999876
No 428
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=89.78 E-value=0.16 Score=51.80 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=20.4
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 038751 199 QIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
.+++|+|+.|+|||||.+.+..
T Consensus 34 e~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999876
No 429
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=89.70 E-value=0.16 Score=51.32 Aligned_cols=22 Identities=36% Similarity=0.685 Sum_probs=20.4
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 038751 199 QIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
.+++|+|+.|+|||||++.+..
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999876
No 430
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=89.70 E-value=0.16 Score=50.58 Aligned_cols=21 Identities=29% Similarity=0.389 Sum_probs=19.3
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 038751 200 IISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~ 220 (915)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999876
No 431
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=89.67 E-value=0.17 Score=53.02 Aligned_cols=22 Identities=36% Similarity=0.347 Sum_probs=20.5
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 038751 199 QIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
++|.|+|+.|+||||||+.+..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999887
No 432
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=89.65 E-value=0.19 Score=52.79 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=21.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
.++|.|+|+.|+||||||..++.
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 433
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=89.64 E-value=0.43 Score=52.63 Aligned_cols=96 Identities=15% Similarity=0.050 Sum_probs=55.7
Q ss_pred HHHHHHhcccccccCceEEEEEEecCCCcHHHHH-HHHhcccccccCCCe-EEEEEeCCCC-CHHHHHHHHHHHhhC---
Q 038751 182 ILKRKLLCESNEERNAVQIISLVGMGGIGKTTLA-QFAYNDKDVIENFDK-RIWVCVSDPF-DEFRIAKAIIEGLEG--- 255 (915)
Q Consensus 182 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~-~~wv~vs~~~-~~~~~~~~i~~~l~~--- 255 (915)
++++.|..-. .-..++|+|.+|+|||+|| ..+.+.. .-+. ++++-+++.. .+.++.+.+...-..
T Consensus 164 raID~l~Pig-----rGQR~~I~g~~g~GKT~Lal~~I~~~~----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rt 234 (515)
T 2r9v_A 164 KAIDSMIPIG-----RGQRELIIGDRQTGKTAIAIDTIINQK----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYT 234 (515)
T ss_dssp HHHHHHSCEE-----TTCBEEEEEETTSSHHHHHHHHHHTTT----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGE
T ss_pred cccccccccc-----cCCEEEEEcCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCccee
Confidence 4566665542 1245789999999999996 5777742 2453 4777777754 344555555442111
Q ss_pred ----CCCCcccHHH-----HHHHHHHHh--ccCeEEEEEeCC
Q 038751 256 ----SLPNLRELNS-----LLEYIHTSI--KEKKFFLILDDV 286 (915)
Q Consensus 256 ----~~~~~~~~~~-----~~~~l~~~l--~~k~~LlVlDdv 286 (915)
...+...... ..-.+.+++ +++..|+++||+
T Consensus 235 vvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsl 276 (515)
T 2r9v_A 235 TVVVASASDPASLQYIAPYAGCAMGEYFAYSGRDALVVYDDL 276 (515)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccH
Confidence 0111111111 122334444 588999999998
No 434
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=89.63 E-value=0.16 Score=51.38 Aligned_cols=22 Identities=32% Similarity=0.569 Sum_probs=20.6
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 038751 199 QIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
.+++|+|+.|+|||||++.+..
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999887
No 435
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=89.57 E-value=0.18 Score=50.36 Aligned_cols=24 Identities=25% Similarity=0.160 Sum_probs=21.8
Q ss_pred ceEEEEEEecCCCcHHHHHHHHhc
Q 038751 197 AVQIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
.-.+|+|.|..|+||||+++.+..
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 457999999999999999999887
No 436
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=89.47 E-value=0.42 Score=52.71 Aligned_cols=96 Identities=17% Similarity=0.077 Sum_probs=55.3
Q ss_pred HHHHHHhcccccccCceEEEEEEecCCCcHHHHH-HHHhcccccccCCC-eEEEEEeCCCC-CHHHHHHHHHHHhhCC--
Q 038751 182 ILKRKLLCESNEERNAVQIISLVGMGGIGKTTLA-QFAYNDKDVIENFD-KRIWVCVSDPF-DEFRIAKAIIEGLEGS-- 256 (915)
Q Consensus 182 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~-~~~wv~vs~~~-~~~~~~~~i~~~l~~~-- 256 (915)
++++.|..-. .-..++|+|.+|+|||+|| ..+.+.. +-+ .++++-+++.. .+.++.+.+...-...
T Consensus 151 raID~l~Pig-----rGQR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~t 221 (502)
T 2qe7_A 151 KAIDSMIPIG-----RGQRELIIGDRQTGKTTIAIDTIINQK----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYT 221 (502)
T ss_dssp HHHHHSSCCB-----TTCBCEEEECSSSCHHHHHHHHHHGGG----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTE
T ss_pred eecccccccc-----cCCEEEEECCCCCCchHHHHHHHHHhh----cCCcEEEEEECCCcchHHHHHHHHHhhCCCccee
Confidence 4566665542 2245789999999999996 5777742 245 34677777754 3445555554421111
Q ss_pred -----CCCcccHHH-----HHHHHHHHh--ccCeEEEEEeCC
Q 038751 257 -----LPNLRELNS-----LLEYIHTSI--KEKKFFLILDDV 286 (915)
Q Consensus 257 -----~~~~~~~~~-----~~~~l~~~l--~~k~~LlVlDdv 286 (915)
..+...... ..-.+.+++ +++..|+++||+
T Consensus 222 vvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Dsl 263 (502)
T 2qe7_A 222 IVVTASASEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDL 263 (502)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecH
Confidence 111111111 122334444 588999999998
No 437
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=89.46 E-value=0.17 Score=51.36 Aligned_cols=22 Identities=36% Similarity=0.564 Sum_probs=20.4
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 038751 199 QIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
.+++|+|+.|+|||||.+.++.
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999876
No 438
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=89.45 E-value=0.17 Score=51.79 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=20.6
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 038751 199 QIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
.+++|+|+.|+|||||++.++.
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999887
No 439
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=89.44 E-value=0.17 Score=49.45 Aligned_cols=22 Identities=32% Similarity=0.431 Sum_probs=19.6
Q ss_pred EEEEEecCCCcHHHHHHHHhcc
Q 038751 200 IISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
+|.|.|++|+||||.|+.+.+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999998873
No 440
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=89.38 E-value=0.17 Score=51.87 Aligned_cols=22 Identities=41% Similarity=0.646 Sum_probs=20.4
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 038751 199 QIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
.+++|+|+.|+|||||++.+..
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999876
No 441
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=89.37 E-value=0.18 Score=52.16 Aligned_cols=23 Identities=22% Similarity=0.424 Sum_probs=20.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
.++|.|+|+.|+||||||..++.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHHH
Confidence 36899999999999999999886
No 442
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=89.34 E-value=0.2 Score=46.41 Aligned_cols=23 Identities=22% Similarity=0.382 Sum_probs=20.1
Q ss_pred EEEEEEecCCCcHHHHHHHHhcc
Q 038751 199 QIISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
..|.|+|.+|+|||||+..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45889999999999999888764
No 443
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=89.34 E-value=0.18 Score=51.48 Aligned_cols=22 Identities=41% Similarity=0.685 Sum_probs=20.4
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 038751 199 QIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
.+++|+|+.|+|||||++.+..
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999876
No 444
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=89.34 E-value=0.17 Score=50.67 Aligned_cols=23 Identities=30% Similarity=0.163 Sum_probs=20.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
...|.|.|+.|+||||+|+.+.+
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999987
No 445
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=89.25 E-value=0.18 Score=50.93 Aligned_cols=22 Identities=41% Similarity=0.558 Sum_probs=20.4
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 038751 199 QIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
.+++|+|+.|+|||||.+.+..
T Consensus 27 e~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 5799999999999999999886
No 446
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=89.24 E-value=0.18 Score=55.40 Aligned_cols=25 Identities=28% Similarity=0.410 Sum_probs=22.4
Q ss_pred ceEEEEEEecCCCcHHHHHHHHhcc
Q 038751 197 AVQIISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
...+|.|+|++|+||||+|+.+...
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 5689999999999999999998873
No 447
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=89.12 E-value=0.19 Score=52.63 Aligned_cols=22 Identities=36% Similarity=0.424 Sum_probs=20.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 038751 199 QIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999876
No 448
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=89.10 E-value=0.58 Score=50.40 Aligned_cols=47 Identities=17% Similarity=0.197 Sum_probs=33.3
Q ss_pred CccccchHHHHHHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcc
Q 038751 171 SDVRGRDEEKNILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
..++|......++.+.+..... ....|.|.|.+|+||+++|+.+...
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~----~~~~vli~GesGtGKe~lAr~ih~~ 175 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAK----SKAPVLITGESGTGKEIVARLIHRY 175 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHT----SCSCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccccccchHHHHHHhhhhhhhc----cchhheEEeCCCchHHHHHHHHHHh
Confidence 3578887777776666543322 1223679999999999999998763
No 449
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=89.08 E-value=0.19 Score=51.17 Aligned_cols=109 Identities=15% Similarity=0.177 Sum_probs=54.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCC-CCCHHHHHHHHHH--HhhCCCCCcccHHHHHHHHHHHh
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSD-PFDEFRIAKAIIE--GLEGSLPNLRELNSLLEYIHTSI 274 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~--~l~~~~~~~~~~~~~~~~l~~~l 274 (915)
-.+++|+|+.|+|||||++.+..- ....+...+++.-.. .+-.... ..++. .++. + ...+...+.+.+
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~--~~~~~~G~I~~~g~~i~~~~~~~-~~~v~q~~~gl---~---~~~l~~~la~aL 95 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDY--INQTKSYHIITIEDPIEYVFKHK-KSIVNQREVGE---D---TKSFADALRAAL 95 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHH--HHHHCCCEEEEEESSCCSCCCCS-SSEEEEEEBTT---T---BSCHHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHHh--CCCCCCCEEEEcCCcceeecCCc-ceeeeHHHhCC---C---HHHHHHHHHHHH
Confidence 468999999999999999988762 211122333322110 0000000 00000 0000 0 022345666667
Q ss_pred ccCeEEEEEeCCCCCCccChhhhHHhhhcCCCCceEEEEcCchHHH
Q 038751 275 KEKKFFLILDDVWPDDYSKWEPFHNCLMNGLCGSRILVTTRKETVA 320 (915)
Q Consensus 275 ~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~ 320 (915)
..++=+|++|+.- +.+....+... ...|.-|++||-...+.
T Consensus 96 ~~~p~illlDEp~--D~~~~~~~l~~---~~~g~~vl~t~H~~~~~ 136 (261)
T 2eyu_A 96 REDPDVIFVGEMR--DLETVETALRA---AETGHLVFGTLHTNTAI 136 (261)
T ss_dssp HHCCSEEEESCCC--SHHHHHHHHHH---HHTTCEEEEEECCSSHH
T ss_pred hhCCCEEEeCCCC--CHHHHHHHHHH---HccCCEEEEEeCcchHH
Confidence 6677789999984 33322222222 23466678777765443
No 450
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=89.07 E-value=0.19 Score=51.47 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=20.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 038751 199 QIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
.+++|+|+.|+|||||.+.++.
T Consensus 34 e~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 5899999999999999999876
No 451
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=89.07 E-value=0.21 Score=52.58 Aligned_cols=25 Identities=40% Similarity=0.449 Sum_probs=21.8
Q ss_pred ceEEEEEEecCCCcHHHHHHHHhcc
Q 038751 197 AVQIISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
..++|.|+|.+|+||||++..++..
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~ 128 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANY 128 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999887763
No 452
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=89.03 E-value=0.19 Score=50.94 Aligned_cols=23 Identities=30% Similarity=0.563 Sum_probs=20.8
Q ss_pred EEEEEEecCCCcHHHHHHHHhcc
Q 038751 199 QIISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
.+++|+|+.|+|||||.+.+..-
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 57999999999999999998763
No 453
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=89.02 E-value=0.21 Score=52.52 Aligned_cols=41 Identities=17% Similarity=0.346 Sum_probs=27.0
Q ss_pred CceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCC
Q 038751 196 NAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSD 238 (915)
Q Consensus 196 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 238 (915)
...++|+|+|-||+||||+|..+.......+ ..++-|....
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G--~~VlliD~D~ 79 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILG--KRVLQIGCDP 79 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEEEESS
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHHCC--CeEEEEeCCC
Confidence 3568999999999999999977665322111 2355555544
No 454
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=89.01 E-value=0.19 Score=51.76 Aligned_cols=22 Identities=36% Similarity=0.457 Sum_probs=20.5
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 038751 199 QIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
.+++|+|+.|+|||||.+.+..
T Consensus 48 e~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 5799999999999999999987
No 455
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=89.00 E-value=0.23 Score=50.67 Aligned_cols=24 Identities=42% Similarity=0.441 Sum_probs=21.3
Q ss_pred ceEEEEEEecCCCcHHHHHHHHhc
Q 038751 197 AVQIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
...++.+.|.||+||||++..+..
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~ 36 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGR 36 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHH
Confidence 468899999999999999988875
No 456
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=88.97 E-value=0.19 Score=50.43 Aligned_cols=25 Identities=24% Similarity=0.271 Sum_probs=21.9
Q ss_pred CceEEEEEEecCCCcHHHHHHHHhc
Q 038751 196 NAVQIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 196 ~~~~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
....+|+|+|+.|+||||+++.+..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999999876
No 457
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=88.95 E-value=0.11 Score=54.04 Aligned_cols=24 Identities=29% Similarity=0.383 Sum_probs=18.3
Q ss_pred ceEEEEEEecCCCcHHHHHHHHhc
Q 038751 197 AVQIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
...+|+|.|..|+||||+|+.+.+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998876
No 458
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=88.93 E-value=0.66 Score=60.08 Aligned_cols=84 Identities=15% Similarity=0.114 Sum_probs=56.1
Q ss_pred ceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhhCCCC-----CcccHHHHHHHHH
Q 038751 197 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLP-----NLRELNSLLEYIH 271 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 271 (915)
.-+++.|+|.+|+||||||.+++..... .=..++|++....++... ++.++.+.. +..+.+++...++
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~a~--~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~~ 454 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQR--EGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 454 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHT--TTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHh--cCCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHHH
Confidence 3468999999999999999888774332 223678998888776542 445544321 2245566666666
Q ss_pred HHh-ccCeEEEEEeCCC
Q 038751 272 TSI-KEKKFFLILDDVW 287 (915)
Q Consensus 272 ~~l-~~k~~LlVlDdvw 287 (915)
... +.+.-+||+|-+.
T Consensus 455 ~lv~~~~~~lIVIDSL~ 471 (2050)
T 3cmu_A 455 ALARSGAVDVIVVDSVA 471 (2050)
T ss_dssp HHHHHTCCSEEEESCGG
T ss_pred HHHHhcCCcEEEECCHH
Confidence 544 3456699999874
No 459
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=88.87 E-value=0.3 Score=53.18 Aligned_cols=24 Identities=21% Similarity=0.339 Sum_probs=21.9
Q ss_pred ceEEEEEEecCCCcHHHHHHHHhc
Q 038751 197 AVQIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
...+++|+|..|+|||||.+.+..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Confidence 457999999999999999999987
No 460
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=88.82 E-value=0.36 Score=48.07 Aligned_cols=24 Identities=33% Similarity=0.487 Sum_probs=21.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcc
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
...|.|.|+.|+||||+++.+.+.
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999874
No 461
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=88.76 E-value=0.21 Score=52.02 Aligned_cols=23 Identities=17% Similarity=0.316 Sum_probs=20.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
-.+++|+|+.|.|||||++.+..
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhh
Confidence 46899999999999999999876
No 462
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=88.74 E-value=0.24 Score=51.24 Aligned_cols=24 Identities=33% Similarity=0.246 Sum_probs=21.6
Q ss_pred ceEEEEEEecCCCcHHHHHHHHhc
Q 038751 197 AVQIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
..++|.|+|+.|+||||||..++.
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHH
Confidence 357899999999999999999886
No 463
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=88.73 E-value=1.4 Score=48.71 Aligned_cols=52 Identities=13% Similarity=0.079 Sum_probs=34.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGL 253 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 253 (915)
-.++.|.|.+|+||||||..++.+...++ ..++|++.. -+..++...++...
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~a~~g--~~vl~fSlE--ms~~ql~~R~~~~~ 248 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVTA 248 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHHHHTT--CEEEEECSS--SCTTHHHHHHHHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHcC--CEEEEEECC--CCHHHHHHHHHHHH
Confidence 46899999999999999988776433221 246666544 44556666665543
No 464
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=88.69 E-value=0.95 Score=50.35 Aligned_cols=59 Identities=12% Similarity=0.108 Sum_probs=41.4
Q ss_pred HHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCH-HHHHHHH
Q 038751 182 ILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDE-FRIAKAI 249 (915)
Q Consensus 182 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~-~~~~~~i 249 (915)
++++.|..-. .-..++|.|..|+|||+|++.+.+. .+-+.++++-+++.... .++.+++
T Consensus 216 rvID~l~Pig-----kGqr~~I~g~~g~GKT~L~~~ia~~----~~~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 216 RVIDTFFPQA-----KGGTAAIPGPAGSGKTVTQHQLAKW----SDAQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp HHHHHHSCEE-----TTCEEEECSCCSHHHHHHHHHHHHH----SSCSEEEEEECCSSSSHHHHHHHHT
T ss_pred chhhccCCcc-----cCCeEEeecCCCCCHHHHHHHHHhc----cCCCEEEEEEecccHHHHHHHHHHH
Confidence 5667776543 2356899999999999999998763 23357888888877554 4555554
No 465
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=88.67 E-value=0.26 Score=47.12 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=21.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcc
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
...|+|+|.+|+|||||...+...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 467899999999999999998764
No 466
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=88.65 E-value=0.24 Score=48.09 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=21.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcc
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
.-.|+|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 456899999999999999998764
No 467
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=88.64 E-value=0.21 Score=51.19 Aligned_cols=21 Identities=38% Similarity=0.659 Sum_probs=19.2
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 038751 200 IISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~ 220 (915)
.++|+|+.|+|||||.+.++.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g 24 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFK 24 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999998876
No 468
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=88.48 E-value=0.17 Score=58.28 Aligned_cols=50 Identities=22% Similarity=0.203 Sum_probs=30.6
Q ss_pred ccccchHHHHHHHHHHhccccc-----ccCceEEEEEEecCCCcHHHHHHHHhcc
Q 038751 172 DVRGRDEEKNILKRKLLCESNE-----ERNAVQIISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 172 ~~~Gr~~~~~~l~~~L~~~~~~-----~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
.++|.+..++.+.-.|...... .-..-.-|.++|++|+|||+||+.+.+.
T Consensus 296 ~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~ 350 (595)
T 3f9v_A 296 SIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRV 350 (595)
T ss_dssp TTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTT
T ss_pred hhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHh
Confidence 4677776555554444322100 0000014789999999999999999873
No 469
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=88.48 E-value=0.22 Score=46.19 Aligned_cols=22 Identities=32% Similarity=0.608 Sum_probs=19.4
Q ss_pred EEEEEecCCCcHHHHHHHHhcc
Q 038751 200 IISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
.|.|+|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999988764
No 470
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=88.38 E-value=0.29 Score=55.71 Aligned_cols=24 Identities=33% Similarity=0.343 Sum_probs=21.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcc
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
-.++.|+|..|+|||||++.++..
T Consensus 281 G~i~~i~G~~GsGKSTLl~~l~g~ 304 (525)
T 1tf7_A 281 DSIILATGATGTGKTLLVSRFVEN 304 (525)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHH
Confidence 468999999999999999988763
No 471
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=88.32 E-value=0.27 Score=54.06 Aligned_cols=25 Identities=40% Similarity=0.409 Sum_probs=21.5
Q ss_pred ceEEEEEEecCCCcHHHHHHHHhcc
Q 038751 197 AVQIISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
..++|.|+|.+|+||||++..+...
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~ 122 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARY 122 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999877663
No 472
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=88.32 E-value=0.35 Score=52.05 Aligned_cols=24 Identities=29% Similarity=0.162 Sum_probs=21.6
Q ss_pred ceEEEEEEecCCCcHHHHHHHHhc
Q 038751 197 AVQIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
...+++|+|++|+|||||++.+..
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 446899999999999999999986
No 473
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=88.22 E-value=0.63 Score=59.49 Aligned_cols=81 Identities=19% Similarity=0.188 Sum_probs=0.0
Q ss_pred EEEEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhhCCCCCc-----ccHHHHHHHHHHH
Q 038751 199 QIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNL-----RELNSLLEYIHTS 273 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~-----~~~~~~~~~l~~~ 273 (915)
+++.|+|.+|+||||||.+++. .....=..++|++....++... ++.++.+.... .+.+++...+...
T Consensus 384 ~lilI~G~pGsGKTtLaLq~a~--~~~~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~i~~~~~~e~~l~~l~~l 456 (1706)
T 3cmw_A 384 RIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDAL 456 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHH--HHHHhCCCeEEEEccCchHHHH-----HHHcCCCHHHeEEcCCCCHHHHHHHHHHH
Q ss_pred h-ccCeEEEEEeCC
Q 038751 274 I-KEKKFFLILDDV 286 (915)
Q Consensus 274 l-~~k~~LlVlDdv 286 (915)
. ..+.-+||+|-+
T Consensus 457 v~~~~~~lVVIDSL 470 (1706)
T 3cmw_A 457 ARSGAVDVIVVDSV 470 (1706)
T ss_dssp HHHTCCSEEEESCS
T ss_pred HHhcCCCEEEECCH
No 474
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=88.22 E-value=0.24 Score=51.15 Aligned_cols=22 Identities=36% Similarity=0.406 Sum_probs=20.0
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 038751 199 QIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
.++.|+|.+|+|||||+..+..
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 6899999999999999988775
No 475
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=88.20 E-value=0.59 Score=50.91 Aligned_cols=98 Identities=11% Similarity=0.076 Sum_probs=56.4
Q ss_pred HHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccccCCC----eEEEEEeCCCC-CHHHHHHHHHHHh--h
Q 038751 182 ILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFD----KRIWVCVSDPF-DEFRIAKAIIEGL--E 254 (915)
Q Consensus 182 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~----~~~wv~vs~~~-~~~~~~~~i~~~l--~ 254 (915)
++++.|..-.. -..++|.|..|+|||+|+..+.+.... +-+ .++++-+++.. .+.++.+++...- .
T Consensus 140 raID~l~pigr-----GQr~~Ifgg~G~GKt~L~~~Ia~~~~~--~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~ 212 (465)
T 3vr4_D 140 SAIDHLNTLVR-----GQKLPVFSGSGLPHKELAAQIARQATV--LDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAID 212 (465)
T ss_dssp HHHHTTSCCBT-----TCBCCEEECTTSCHHHHHHHHHHHCBC--SSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGG
T ss_pred eEEeccccccc-----CCEEEEeCCCCcChHHHHHHHHHHHHh--ccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCcc
Confidence 45565654321 134689999999999999988885332 223 56677777653 4455666554421 1
Q ss_pred C-----CCCCcccHH-----HHHHHHHHHhc---cCeEEEEEeCC
Q 038751 255 G-----SLPNLRELN-----SLLEYIHTSIK---EKKFFLILDDV 286 (915)
Q Consensus 255 ~-----~~~~~~~~~-----~~~~~l~~~l~---~k~~LlVlDdv 286 (915)
. ...+..... ...-.+.+++. ++.+|+++||+
T Consensus 213 rtvvV~atsd~p~~~r~~a~~~a~tiAEyfrd~~G~~VLl~~Dsl 257 (465)
T 3vr4_D 213 RSVMFMNLANDPAIERIATPRMALTAAEYLAYEKGMHVLVIMTDM 257 (465)
T ss_dssp GEEEEEEETTSCHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEECH
T ss_pred ceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 0 011111111 12233455553 78999999998
No 476
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=88.19 E-value=0.29 Score=45.63 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=20.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcc
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
.-.|.|+|.+|+|||||+..+.+.
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 345789999999999999988764
No 477
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=88.13 E-value=0.26 Score=47.22 Aligned_cols=22 Identities=23% Similarity=0.253 Sum_probs=19.9
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 038751 199 QIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
+.|.|.|+.|+||||||..+..
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~ 56 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQ 56 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999988876
No 478
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=88.11 E-value=1.4 Score=43.94 Aligned_cols=100 Identities=19% Similarity=0.184 Sum_probs=51.5
Q ss_pred EEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhhC---C--------CC---C--cccHH
Q 038751 201 ISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEG---S--------LP---N--LRELN 264 (915)
Q Consensus 201 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~---~--------~~---~--~~~~~ 264 (915)
+.|+|+.|.|||.+|..+.... . ..++++. .. ..+..++.+.+.. . .. + ....+
T Consensus 111 ~ll~~~tG~GKT~~a~~~~~~~----~-~~~liv~-P~----~~L~~q~~~~~~~~~~~~v~~~~g~~~~~~~i~v~T~~ 180 (237)
T 2fz4_A 111 GCIVLPTGSGKTHVAMAAINEL----S-TPTLIVV-PT----LALAEQWKERLGIFGEEYVGEFSGRIKELKPLTVSTYD 180 (237)
T ss_dssp EEEEESSSTTHHHHHHHHHHHS----C-SCEEEEE-SS----HHHHHHHHHHHGGGCGGGEEEESSSCBCCCSEEEEEHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHc----C-CCEEEEe-CC----HHHHHHHHHHHHhCCCCeEEEEeCCCCCcCCEEEEeHH
Confidence 7789999999999998776532 1 1233432 22 2333444443322 1 00 0 01123
Q ss_pred HHHHHHHHHhccCeEEEEEeCCCCCCccChhhhHHhhhcCCCCceEEEEc
Q 038751 265 SLLEYIHTSIKEKKFFLILDDVWPDDYSKWEPFHNCLMNGLCGSRILVTT 314 (915)
Q Consensus 265 ~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTt 314 (915)
.+..... .+.++--+||+|+++.-....+..+...+. ...++.+|.
T Consensus 181 ~l~~~~~-~~~~~~~llIiDEaH~l~~~~~~~i~~~~~---~~~~l~LSA 226 (237)
T 2fz4_A 181 SAYVNAE-KLGNRFMLLIFDEVHHLPAESYVQIAQMSI---APFRLGLTA 226 (237)
T ss_dssp HHHHTHH-HHTTTCSEEEEECSSCCCTTTHHHHHHTCC---CSEEEEEEE
T ss_pred HHHhhHH-HhcccCCEEEEECCccCCChHHHHHHHhcc---CCEEEEEec
Confidence 3333332 333445699999997654455655544443 233455454
No 479
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=88.06 E-value=0.2 Score=52.28 Aligned_cols=23 Identities=35% Similarity=0.632 Sum_probs=20.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
-.+++|+|+.|.|||||++.+..
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTT
T ss_pred CCEEEEECCCCchHHHHHHHHHc
Confidence 36899999999999999999865
No 480
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=87.95 E-value=2.1 Score=51.61 Aligned_cols=120 Identities=18% Similarity=0.126 Sum_probs=62.8
Q ss_pred EEEEEEecCCCcHHHHHHHHhcccccccCCC---eEEEEEeCCCC-------CHH-----------HHHHHHHHHhhCC-
Q 038751 199 QIISLVGMGGIGKTTLAQFAYNDKDVIENFD---KRIWVCVSDPF-------DEF-----------RIAKAIIEGLEGS- 256 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~---~~~wv~vs~~~-------~~~-----------~~~~~i~~~l~~~- 256 (915)
.+++|+|+.|+|||||.+.+..- .+. .++ ..-.+.+.+.. ++. +-...+++.++..
T Consensus 462 e~v~LiGpNGsGKSTLLk~LagG-~i~-g~~~~~~~~~~~v~q~~~~~~~~ltv~e~l~~~~~~~~~~v~~~L~~lgL~~ 539 (986)
T 2iw3_A 462 RRYGICGPNGCGKSTLMRAIANG-QVD-GFPTQEECRTVYVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFTD 539 (986)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHT-CST-TCCCTTTSCEEETTCCCCCCCTTSBHHHHHHTTCSSCHHHHHHHHHHTTCCH
T ss_pred CEEEEECCCCCCHHHHHHHHhCC-CcC-CCccccceeEEEEcccccccccCCcHHHHHHHhhcCHHHHHHHHHHHcCCCh
Confidence 57999999999999999999731 111 011 00012223221 111 2233444444431
Q ss_pred -----CC-CcccHHHHHHHHHHHhccCeEEEEEeCCCC-CCccChhhhHHhhhcCCCCceEEEEcCchHHHhh
Q 038751 257 -----LP-NLRELNSLLEYIHTSIKEKKFFLILDDVWP-DDYSKWEPFHNCLMNGLCGSRILVTTRKETVARM 322 (915)
Q Consensus 257 -----~~-~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~-~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~ 322 (915)
.. ..+..+...-.|.+.+-.++=+|+||.--. -|...-..+...+.. .|..||++|-+......
T Consensus 540 ~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~~ 610 (986)
T 2iw3_A 540 EMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLDN 610 (986)
T ss_dssp HHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHHH
T ss_pred hhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHHH
Confidence 01 111222233345566667788999998632 122233345555555 46678888877655443
No 481
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=87.79 E-value=1 Score=49.09 Aligned_cols=26 Identities=23% Similarity=0.299 Sum_probs=23.0
Q ss_pred cCceEEEEEEecCCCcHHHHHHHHhc
Q 038751 195 RNAVQIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 195 ~~~~~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
....++..|.|.+|.||||+.+..++
T Consensus 158 ~~~~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 158 VSSAKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp CCCSEEEEEEECTTSCHHHHHHHHCC
T ss_pred cccccEEEEEcCCCCCHHHHHHHHhc
Confidence 44678999999999999999988875
No 482
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=87.78 E-value=0.26 Score=45.94 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=19.1
Q ss_pred EEEEEecCCCcHHHHHHHHhcc
Q 038751 200 IISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
-|.|+|.+|+|||||.+.+.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 4789999999999999988653
No 483
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=87.75 E-value=0.34 Score=45.52 Aligned_cols=24 Identities=33% Similarity=0.502 Sum_probs=20.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcc
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
.-.|.|+|.+|+|||||+..+...
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 356889999999999999988764
No 484
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=87.75 E-value=0.72 Score=45.24 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=21.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcc
Q 038751 198 VQIISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
-..|.|.|+.|+||||+++.+.+.
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~ 29 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAER 29 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 368999999999999999998874
No 485
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=87.71 E-value=0.27 Score=46.38 Aligned_cols=23 Identities=17% Similarity=0.226 Sum_probs=20.1
Q ss_pred EEEEEEecCCCcHHHHHHHHhcc
Q 038751 199 QIISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
..|+|+|.+|+|||||...+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45789999999999999998764
No 486
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=87.63 E-value=0.27 Score=52.30 Aligned_cols=22 Identities=36% Similarity=0.587 Sum_probs=20.5
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 038751 199 QIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
.+++|+|+.|+|||||.+.+..
T Consensus 31 e~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCchHHHHHHHHhc
Confidence 5899999999999999999976
No 487
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=87.59 E-value=0.29 Score=51.59 Aligned_cols=25 Identities=36% Similarity=0.559 Sum_probs=22.4
Q ss_pred ceEEEEEEecCCCcHHHHHHHHhcc
Q 038751 197 AVQIISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
..+++.|+|+.|.|||||.+.+...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 4789999999999999999998863
No 488
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=87.57 E-value=0.36 Score=45.57 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=21.4
Q ss_pred ceEEEEEEecCCCcHHHHHHHHhcc
Q 038751 197 AVQIISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
....|.|+|.+|+|||||+..+.+.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567889999999999999988764
No 489
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=87.56 E-value=0.28 Score=50.77 Aligned_cols=23 Identities=30% Similarity=0.588 Sum_probs=20.9
Q ss_pred EEEEEEecCCCcHHHHHHHHhcc
Q 038751 199 QIISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
.+++|+|+.|+|||||.+.+..-
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 58999999999999999999763
No 490
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=87.52 E-value=0.3 Score=49.10 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=20.8
Q ss_pred EEEEEEecCCCcHHHHHHHHhcc
Q 038751 199 QIISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
..|.|.|..|+||||+++.+.+.
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 67999999999999999998873
No 491
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=87.46 E-value=2.3 Score=57.20 Aligned_cols=127 Identities=14% Similarity=0.080 Sum_probs=0.0
Q ss_pred EEEEecCCCcHHHHHHHHhcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhhCCC----------CCcccHHHHHHHH
Q 038751 201 ISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSL----------PNLRELNSLLEYI 270 (915)
Q Consensus 201 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~----------~~~~~~~~~~~~l 270 (915)
|.++|++|+|||++|+.+.. ...+ ...+.++.+...+...+.+.+-..+.... +.
T Consensus 1270 vLL~GPpGtGKT~la~~~l~--~~~~--~~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~~P~~~----------- 1334 (2695)
T 4akg_A 1270 IILCGPPGSGKTMIMNNALR--NSSL--YDVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLLPKSD----------- 1334 (2695)
T ss_dssp EEEECSTTSSHHHHHHHHHH--SCSS--CEEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEEEEBSS-----------
T ss_pred EEEECCCCCCHHHHHHHHHh--cCCC--CceEEEEeecCCCHHHHHHHHHHHhhhccccCCccccCCCC-----------
Q ss_pred HHHhccCeEEEEEeCCCCCCcc------ChhhhHHhhhcCC------------CCceEEEEcCchH-------HHhhhcC
Q 038751 271 HTSIKEKKFFLILDDVWPDDYS------KWEPFHNCLMNGL------------CGSRILVTTRKET-------VARMMES 325 (915)
Q Consensus 271 ~~~l~~k~~LlVlDdvw~~~~~------~~~~l~~~l~~~~------------~gs~iivTtR~~~-------v~~~~~~ 325 (915)
+++.++.+||+.-...+ ..+.++..+..++ .+..+|-++-.+. -.+....
T Consensus 1335 -----gk~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRr 1409 (2695)
T 4akg_A 1335 -----IKNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRH 1409 (2695)
T ss_dssp -----SSCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTT
T ss_pred -----CceEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhhe
Q ss_pred cCeEeCCCCCHHHHHHHHHHhH
Q 038751 326 TDVISIKELSEQECWSLFKRFA 347 (915)
Q Consensus 326 ~~~~~l~~L~~~~~~~lf~~~~ 347 (915)
..++.+...++++-..+|....
T Consensus 1410 f~vi~i~~P~~~~l~~I~~~il 1431 (2695)
T 4akg_A 1410 AAILYLGYPSGKSLSQIYEIYY 1431 (2695)
T ss_dssp EEEEECCCCTTTHHHHHHHHHH
T ss_pred eeEEEeCCCCHHHHHHHHHHHH
No 492
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=87.45 E-value=0.44 Score=51.91 Aligned_cols=100 Identities=7% Similarity=0.018 Sum_probs=55.9
Q ss_pred HHHHHHhcccccccCceEEEEEEecCCCcHHHHHHHHhcccccc--------cCCC-eEEEEEeCCCC-CHHHHHHHHHH
Q 038751 182 ILKRKLLCESNEERNAVQIISLVGMGGIGKTTLAQFAYNDKDVI--------ENFD-KRIWVCVSDPF-DEFRIAKAIIE 251 (915)
Q Consensus 182 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--------~~F~-~~~wv~vs~~~-~~~~~~~~i~~ 251 (915)
++++.|..-.. -..++|.|.+|+|||+|+..+.+..... ++=+ .++++-+++.. .+.++.+++..
T Consensus 136 raID~l~pigr-----GQr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~ 210 (464)
T 3gqb_B 136 STIDVMNTLVR-----GQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFER 210 (464)
T ss_dssp HHHHTTSCCBT-----TCBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHH
T ss_pred eeeeccccccc-----CCEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhh
Confidence 45555554321 2346899999999999999888754331 1111 56677777653 34455555443
Q ss_pred Hh--hC-----CCCCcccHH-----HHHHHHHHHhc---cCeEEEEEeCC
Q 038751 252 GL--EG-----SLPNLRELN-----SLLEYIHTSIK---EKKFFLILDDV 286 (915)
Q Consensus 252 ~l--~~-----~~~~~~~~~-----~~~~~l~~~l~---~k~~LlVlDdv 286 (915)
.- .. ...+..... ...-.+.+++. ++..|+++||+
T Consensus 211 ~g~~~rtvvv~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~Ddl 260 (464)
T 3gqb_B 211 TGALSRSVLFLNKADDPTIERILTPRMALTVAEYLAFEHDYHVLVILTDM 260 (464)
T ss_dssp TSGGGGEEEEEEETTSCTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETH
T ss_pred cccccceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 21 10 011111111 12233455553 78999999998
No 493
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=87.38 E-value=0.34 Score=46.57 Aligned_cols=25 Identities=24% Similarity=0.413 Sum_probs=21.4
Q ss_pred ceEEEEEEecCCCcHHHHHHHHhcc
Q 038751 197 AVQIISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
....|.|+|.+|+|||||...+.+.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567889999999999999988764
No 494
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=87.36 E-value=0.26 Score=47.24 Aligned_cols=23 Identities=30% Similarity=0.557 Sum_probs=20.0
Q ss_pred EEEEEEecCCCcHHHHHHHHhcc
Q 038751 199 QIISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
-.|.|+|.+|+|||||+..+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46789999999999999988764
No 495
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=87.34 E-value=0.65 Score=51.32 Aligned_cols=100 Identities=17% Similarity=0.092 Sum_probs=56.2
Q ss_pred HHHHHHhcccccccCceEEEEEEecCCCcHHHHH-HHHhccccc----ccCCC-eEEEEEeCCCC-CHHHHHHHHHHHhh
Q 038751 182 ILKRKLLCESNEERNAVQIISLVGMGGIGKTTLA-QFAYNDKDV----IENFD-KRIWVCVSDPF-DEFRIAKAIIEGLE 254 (915)
Q Consensus 182 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~----~~~F~-~~~wv~vs~~~-~~~~~~~~i~~~l~ 254 (915)
++++.|..-.. -..++|+|..|+|||+|| ..+.+.... .++-+ .++++-+++.. .+.++.+.+...-.
T Consensus 151 raID~l~Pigr-----GQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~ 225 (510)
T 2ck3_A 151 KAVDSLVPIGR-----GQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADA 225 (510)
T ss_dssp HHHHHHSCCBT-----TCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTC
T ss_pred eeecccccccc-----CCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCC
Confidence 45666655422 245789999999999995 566664321 02234 46778888764 34455555544211
Q ss_pred C-------CCCCcccHHH-----HHHHHHHHh--ccCeEEEEEeCC
Q 038751 255 G-------SLPNLRELNS-----LLEYIHTSI--KEKKFFLILDDV 286 (915)
Q Consensus 255 ~-------~~~~~~~~~~-----~~~~l~~~l--~~k~~LlVlDdv 286 (915)
. ...+...... ..-.+.+++ +++..||++||+
T Consensus 226 m~~tvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsl 271 (510)
T 2ck3_A 226 MKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDL 271 (510)
T ss_dssp GGGEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETH
T ss_pred cccceEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCH
Confidence 0 0111111111 122334444 588999999998
No 496
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=87.31 E-value=0.37 Score=45.83 Aligned_cols=25 Identities=32% Similarity=0.368 Sum_probs=21.5
Q ss_pred ceEEEEEEecCCCcHHHHHHHHhcc
Q 038751 197 AVQIISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
....|.|+|.+|+|||||...+...
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 3467889999999999999998764
No 497
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=87.30 E-value=0.34 Score=45.23 Aligned_cols=25 Identities=28% Similarity=0.345 Sum_probs=21.0
Q ss_pred ceEEEEEEecCCCcHHHHHHHHhcc
Q 038751 197 AVQIISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
..-.|.|+|.+|+|||||+..+...
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3456889999999999999888764
No 498
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=87.26 E-value=0.32 Score=46.39 Aligned_cols=22 Identities=23% Similarity=0.419 Sum_probs=19.5
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 038751 199 QIISLVGMGGIGKTTLAQFAYN 220 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (915)
.+.+|+|+.|.|||||+..++-
T Consensus 27 g~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999988864
No 499
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=87.20 E-value=0.29 Score=45.76 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=19.8
Q ss_pred EEEEEEecCCCcHHHHHHHHhcc
Q 038751 199 QIISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
-.|.|+|.+|+|||||+..+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999988764
No 500
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=87.17 E-value=0.43 Score=44.97 Aligned_cols=25 Identities=28% Similarity=0.351 Sum_probs=20.8
Q ss_pred ceEEEEEEecCCCcHHHHHHHHhcc
Q 038751 197 AVQIISLVGMGGIGKTTLAQFAYND 221 (915)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (915)
..--|.|+|.+|+|||||+..+.+.
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGG
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhC
Confidence 3456789999999999999888764
Done!