BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038754
(79 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HYM|B Chain B, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|D Chain D, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|F Chain F, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|H Chain H, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|J Chain J, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|L Chain L, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
Length = 330
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 35/60 (58%)
Query: 2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLS 61
Y EA+ + +AL L+ ++ STY+ + Y + L NF A+ Y+H AL L+ DD F L
Sbjct: 252 YAEALDYHRQALVLIPQNASTYSAIGYIHSLXGNFENAVDYFHTALGLRRDDTFSVTXLG 311
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%)
Query: 2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLS 61
Y EAI Y++AL L + + L Y+ Q ++ AI YY KAL L P++ + L
Sbjct: 25 YDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLG 84
Query: 62 LALVDEG 68
A +G
Sbjct: 85 NAKQKQG 91
Score = 28.9 bits (63), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 18 RSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGRHGIDPKIE 77
S + L Y+ Q ++ AI YY KAL L P++ L A +G + D IE
Sbjct: 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDY--DEAIE 64
Query: 78 F 78
+
Sbjct: 65 Y 65
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%)
Query: 2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLS 61
Y EAI Y++AL L + + L Y+ Q ++ AI YY KAL L P++ + L
Sbjct: 59 YDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLG 118
Query: 62 LALVDEG 68
A +G
Sbjct: 119 NAKQKQG 125
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLS 61
Y EAI Y++AL L + + L Y+ Q ++ AI YY KAL L P++ L
Sbjct: 25 YDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLG 84
Query: 62 LALVDEGRHGIDPKIEF 78
A +G + D IE+
Sbjct: 85 NAYYKQGDY--DEAIEY 99
Score = 29.3 bits (64), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 18 RSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGRHGIDPKIE 77
S + L Y+ Q ++ AI YY KAL L P++ L A +G + D IE
Sbjct: 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDY--DEAIE 64
Query: 78 F 78
+
Sbjct: 65 Y 65
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr
Superhelix (Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr
Superhelix (Orthorombic Crystal Form)
Length = 136
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Query: 2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLS 61
Y EAI Y++AL L RS + L Y+ Q ++ AI YY KAL L P L
Sbjct: 17 YDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLG 76
Query: 62 LALVDEGRHGIDPKIEF 78
A +G + D IE+
Sbjct: 77 NAYYKQGDY--DEAIEY 91
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Query: 2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLS 61
Y EAI Y++AL L RS + L Y+ Q ++ AI YY KAL L P L
Sbjct: 51 YDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLG 110
Query: 62 LALVDEGRHGIDPKIEF 78
A +G + D IE+
Sbjct: 111 NAYYKQGDY--DEAIEY 125
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 28/50 (56%)
Query: 2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKP 51
Y EAI Y++AL L RS + L Y+ Q ++ AI YY KAL L P
Sbjct: 85 YDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134
Score = 25.8 bits (55), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 26 LAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGRHGIDPKIEF 78
L Y+ Q ++ AI YY KAL L P L A +G + D IE+
Sbjct: 7 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDY--DEAIEY 57
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%)
Query: 2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLS 61
Y EAI Y++AL L + + L Y+ Q ++ AI YY KAL L P++ + L
Sbjct: 59 YDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAKQNLG 118
Query: 62 LALVDEG 68
A +G
Sbjct: 119 NAKQKQG 125
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLS 61
Y EAI Y++AL L + + L Y+ Q ++ AI YY KAL L P++ L
Sbjct: 25 YDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLG 84
Query: 62 LALVDEGRHGIDPKIEF 78
A +G + D IE+
Sbjct: 85 NAYYKQGDY--DEAIEY 99
Score = 28.5 bits (62), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 18 RSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGRHGIDPKIE 77
S + L Y+ Q ++ AI YY KAL L P++ L A +G + D IE
Sbjct: 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDY--DEAIE 64
Query: 78 F 78
+
Sbjct: 65 Y 65
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr
Superhelix
Length = 70
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 28/50 (56%)
Query: 2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKP 51
Y EAI Y++AL L RS + L Y+ Q ++ AI YY KAL L P
Sbjct: 19 YDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 68
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 19 SLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGRHGIDPKIEF 78
S + L Y+ Q ++ AI YY KAL L P L A +G + D IE+
Sbjct: 2 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDY--DEAIEY 59
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%)
Query: 2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD 53
Y +AI Y++AL L + S + L Y+ Q ++ AI YY KAL L P++
Sbjct: 25 YQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNN 76
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%)
Query: 2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLS 61
Y +AI Y++AL L + + Y+ Q ++ AI Y KAL L P++ + L
Sbjct: 59 YQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNLG 118
Query: 62 LALVDEG 68
A +G
Sbjct: 119 NAKQKQG 125
Score = 29.3 bits (64), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 23/50 (46%)
Query: 19 SLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEG 68
S + L Y+ Q ++ AI YY KAL L P++ L A +G
Sbjct: 8 SAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQG 57
>pdb|4HOU|A Chain A, Crystal Structure Of N-terminal Human Ifit1
pdb|4HOU|B Chain B, Crystal Structure Of N-terminal Human Ifit1
Length = 273
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 10/79 (12%)
Query: 2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHK---------ALWLKPD 52
Y A +C+E+ L + + + AG A + + D F A T HK A+ L PD
Sbjct: 151 YERAKACFEKVLEVDPENPESSAGYAISAYRLDGFKLA-TKNHKPFSLLPLRQAVRLNPD 209
Query: 53 DQFCTEMLSLALVDEGRHG 71
+ + +L+L L DEG+
Sbjct: 210 NGYIKVLLALKLQDEGQEA 228
>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|B Chain B, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|D Chain D, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3TAX|A Chain A, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|3TAX|C Chain C, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|4AY5|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY6|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4GYW|A Chain A, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYW|C Chain C, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYY|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GYY|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GZ3|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ3|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ5|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ6|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
Length = 723
Score = 34.3 bits (77), Expect = 0.017, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 5 AISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPD--DQFCTEMLSL 62
A+ CY RA+ + ++ LA + N AI Y AL LKPD D +C L
Sbjct: 96 ALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCL 155
Query: 63 ALV 65
+V
Sbjct: 156 QIV 158
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 33.1 bits (74), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Query: 1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKP--DDQFCTE 58
I+ A++ Y RAL+L + LA Y+ Q AI Y +A+ L+P D +C
Sbjct: 218 IFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCN- 276
Query: 59 MLSLALVDEG 68
L+ AL ++G
Sbjct: 277 -LANALKEKG 285
Score = 28.9 bits (63), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 27/66 (40%)
Query: 4 EAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLA 63
EA CY AL L + LA Q N A+ Y KAL + P+ L+
Sbjct: 289 EAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASV 348
Query: 64 LVDEGR 69
L +G+
Sbjct: 349 LQQQGK 354
>pdb|4G1T|A Chain A, Crystal Structure Of Interferon-Stimulated Gene 54
pdb|4G1T|B Chain B, Crystal Structure Of Interferon-Stimulated Gene 54
Length = 472
Score = 32.3 bits (72), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 5 AISCYERALTLLNRSLSTYAGLAYTYHLQDNFSA---AITYYHKALWLKPDDQFCTEMLS 61
A C+E+AL ++ +GLA + DN+ AI +A+ L PD+Q+ +L+
Sbjct: 157 AKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLA 216
Query: 62 LAL 64
L L
Sbjct: 217 LKL 219
>pdb|3CV0|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Phosphoglucoisomerase (Pgi) Pts1 Peptide
pdb|3CVL|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Phosphofructokinase (Pfk) Pts1 Peptide
pdb|3CVN|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Glyceraldehyde-3-Phosphate Dehydrogenase
(Gapdh) Pts1 Peptide
pdb|3CVP|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To Pts1 Peptide (10-Skl)
Length = 327
Score = 29.6 bits (65), Expect = 0.40, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 29/68 (42%)
Query: 2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLS 61
Y E + AL + +A L Y+L +N+ +A +A+ L+PDD L
Sbjct: 154 YRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLG 213
Query: 62 LALVDEGR 69
L + R
Sbjct: 214 ATLANGNR 221
>pdb|3CVQ|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (tbpex5)complexed
To Pts1 Peptide (7- Skl)
Length = 327
Score = 29.6 bits (65), Expect = 0.43, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 29/68 (42%)
Query: 2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLS 61
Y E + AL + +A L Y+L +N+ +A +A+ L+PDD L
Sbjct: 154 YRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLG 213
Query: 62 LALVDEGR 69
L + R
Sbjct: 214 ATLANGNR 221
>pdb|4EQF|A Chain A, Trip8b-1a#206-567 Interacting With The Carboxy-Terminal
Seven Residues Of Hcn2
Length = 365
Score = 27.7 bits (60), Expect = 1.6, Method: Composition-based stats.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 25 GLAYTYHLQDNFSAAITYYHKALWLKPDD 53
GL +HL F+ AI ++ AL ++P+D
Sbjct: 218 GLGVLFHLSGEFNRAIDAFNAALTVRPED 246
>pdb|2EG9|A Chain A, Crystal Structure Of The Truncated Extracellular Domain
Of Mouse Cd38
pdb|2EG9|B Chain B, Crystal Structure Of The Truncated Extracellular Domain
Of Mouse Cd38
Length = 253
Score = 26.9 bits (58), Expect = 2.5, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 20/44 (45%)
Query: 18 RSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLS 61
RSL + G T H D F Y + L + DQ C E+LS
Sbjct: 13 RSLLVWTGEPTTKHFSDIFLGRCLIYTQILRPEMRDQNCQEILS 56
>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal
Tail Indicating Conformational Plasticity
Length = 533
Score = 26.2 bits (56), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 25/51 (49%)
Query: 2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPD 52
++EAI Y+ A+ L Y+ ++ Y + I + KAL +KPD
Sbjct: 37 FNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD 87
>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82
C-Terminal Fragment
pdb|3FP3|A Chain A, Crystal Structure Of Tom71
pdb|3FP4|A Chain A, Crystal Structure Of Tom71 Complexed With Ssa1
C-Terminal Fragment
Length = 537
Score = 26.2 bits (56), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 25/51 (49%)
Query: 2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPD 52
++EAI Y+ A+ L Y+ ++ Y + I + KAL +KPD
Sbjct: 41 FNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD 91
>pdb|3VTX|A Chain A, Crystal Structure Of Mama Protein
pdb|3VTX|B Chain B, Crystal Structure Of Mama Protein
pdb|3VTY|A Chain A, Crystal Structure Of Mama
pdb|3VTY|B Chain B, Crystal Structure Of Mama
pdb|3VTY|C Chain C, Crystal Structure Of Mama
pdb|3VTY|D Chain D, Crystal Structure Of Mama
Length = 184
Score = 26.2 bits (56), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 29/76 (38%), Gaps = 2/76 (2%)
Query: 3 HEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSL 62
AI +RA+ L Y L Y AI Y K + +KP F S+
Sbjct: 90 QAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP--GFIRAYQSI 147
Query: 63 ALVDEGRHGIDPKIEF 78
L EG+ D +++
Sbjct: 148 GLAYEGKGLRDEAVKY 163
>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt
pdb|2VYI|B Chain B, Crystal Structure Of The Tpr Domain Of Human Sgt
Length = 131
Score = 26.2 bits (56), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 26/62 (41%)
Query: 2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLS 61
Y A+ ERA+ + Y + + A+ YY KAL L PD++ L
Sbjct: 62 YAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLK 121
Query: 62 LA 63
+A
Sbjct: 122 IA 123
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,459,600
Number of Sequences: 62578
Number of extensions: 79567
Number of successful extensions: 185
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 142
Number of HSP's gapped (non-prelim): 44
length of query: 79
length of database: 14,973,337
effective HSP length: 48
effective length of query: 31
effective length of database: 11,969,593
effective search space: 371057383
effective search space used: 371057383
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)