Query 038754
Match_columns 79
No_of_seqs 112 out of 2338
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 02:59:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038754.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038754hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13432 TPR_16: Tetratricopep 99.6 2.2E-14 4.8E-19 68.0 5.8 54 1-54 12-65 (65)
2 PF13414 TPR_11: TPR repeat; P 99.5 3.1E-14 6.7E-19 68.2 5.3 51 1-51 18-69 (69)
3 PRK15359 type III secretion sy 99.5 1.7E-13 3.8E-18 74.2 8.6 68 2-69 40-107 (144)
4 PRK15359 type III secretion sy 99.5 5.7E-13 1.2E-17 72.2 9.1 67 1-67 73-139 (144)
5 PF14559 TPR_19: Tetratricopep 99.5 3.3E-13 7.1E-18 64.3 6.4 62 1-62 6-67 (68)
6 PRK15363 pathogenicity island 99.5 1.1E-12 2.4E-17 71.7 8.4 71 1-71 50-120 (157)
7 PF13371 TPR_9: Tetratricopept 99.4 1.5E-12 3.3E-17 62.8 7.7 60 1-60 10-69 (73)
8 KOG0553 TPR repeat-containing 99.4 7.3E-12 1.6E-16 74.0 7.9 70 2-71 131-200 (304)
9 PLN03088 SGT1, suppressor of 99.3 2.1E-11 4.6E-16 74.3 9.7 66 2-67 52-117 (356)
10 KOG0553 TPR repeat-containing 99.3 7.4E-12 1.6E-16 74.0 7.1 69 1-69 96-164 (304)
11 PRK11189 lipoprotein NlpI; Pro 99.3 3E-11 6.5E-16 72.0 9.6 67 2-68 80-146 (296)
12 TIGR02552 LcrH_SycD type III s 99.3 5.9E-11 1.3E-15 63.0 8.6 69 1-69 32-100 (135)
13 PLN03088 SGT1, suppressor of 99.3 9.9E-11 2.1E-15 71.4 9.7 69 1-69 17-85 (356)
14 PRK10370 formate-dependent nit 99.3 1.4E-10 3E-15 65.8 9.4 67 2-68 55-122 (198)
15 KOG1126 DNA-binding cell divis 99.2 2.1E-11 4.6E-16 77.8 5.2 70 1-70 470-539 (638)
16 KOG4626 O-linked N-acetylgluco 99.2 4.4E-11 9.5E-16 76.9 5.6 68 2-69 404-471 (966)
17 PRK12370 invasion protein regu 99.2 2.6E-10 5.6E-15 72.8 9.0 65 3-67 321-385 (553)
18 TIGR02552 LcrH_SycD type III s 99.2 4.8E-10 1E-14 59.5 8.6 63 1-63 66-128 (135)
19 TIGR00990 3a0801s09 mitochondr 99.2 5.1E-10 1.1E-14 72.1 9.5 66 2-67 381-446 (615)
20 KOG1155 Anaphase-promoting com 99.2 2.3E-10 4.9E-15 71.3 7.3 65 2-66 346-410 (559)
21 PF13428 TPR_14: Tetratricopep 99.2 1.6E-10 3.4E-15 51.0 4.9 43 20-62 1-43 (44)
22 PRK10370 formate-dependent nit 99.2 8.4E-10 1.8E-14 62.7 9.0 66 2-67 89-157 (198)
23 KOG4626 O-linked N-acetylgluco 99.2 4.2E-10 9E-15 72.6 8.4 70 2-71 302-371 (966)
24 cd00189 TPR Tetratricopeptide 99.1 1.3E-09 2.8E-14 53.0 8.6 69 1-69 15-83 (100)
25 PF12895 Apc3: Anaphase-promot 99.1 1.4E-10 3E-15 57.5 4.9 68 1-69 4-73 (84)
26 PRK12370 invasion protein regu 99.1 9E-10 1.9E-14 70.4 9.4 57 1-57 353-409 (553)
27 PF00515 TPR_1: Tetratricopept 99.1 1.8E-10 3.8E-15 48.0 4.0 34 20-53 1-34 (34)
28 PF13431 TPR_17: Tetratricopep 99.1 1.3E-10 2.8E-15 48.7 3.3 33 8-40 1-33 (34)
29 PRK11189 lipoprotein NlpI; Pro 99.1 2E-09 4.4E-14 64.2 9.2 55 1-55 113-167 (296)
30 PRK09782 bacteriophage N4 rece 99.1 1.7E-09 3.6E-14 73.0 9.5 68 2-69 625-692 (987)
31 TIGR00990 3a0801s09 mitochondr 99.1 1.9E-09 4.1E-14 69.5 9.4 69 1-69 414-482 (615)
32 PF07719 TPR_2: Tetratricopept 99.1 5.2E-10 1.1E-14 46.4 4.7 34 20-53 1-34 (34)
33 CHL00033 ycf3 photosystem I as 99.1 3.4E-09 7.4E-14 58.5 9.3 68 1-68 50-120 (168)
34 KOG1173 Anaphase-promoting com 99.1 1.5E-09 3.2E-14 68.9 8.6 66 1-66 470-535 (611)
35 PRK15179 Vi polysaccharide bio 99.1 1.8E-09 3.8E-14 70.7 9.2 70 1-70 135-204 (694)
36 KOG0543 FKBP-type peptidyl-pro 99.1 2.1E-09 4.5E-14 65.9 8.9 66 1-66 272-337 (397)
37 PF13414 TPR_11: TPR repeat; P 99.1 9.1E-10 2E-14 52.5 6.0 50 19-68 2-51 (69)
38 PRK02603 photosystem I assembl 99.1 3.8E-09 8.1E-14 58.6 8.8 69 1-69 50-121 (172)
39 TIGR02795 tol_pal_ybgF tol-pal 99.1 5.7E-09 1.2E-13 53.9 9.0 69 1-69 17-91 (119)
40 PRK15363 pathogenicity island 99.1 3.2E-09 6.9E-14 58.2 8.2 64 1-64 84-150 (157)
41 TIGR02521 type_IV_pilW type IV 99.1 6E-09 1.3E-13 58.5 9.5 68 1-68 46-113 (234)
42 COG5010 TadD Flp pilus assembl 99.0 3.2E-09 7E-14 61.9 7.5 68 1-68 115-182 (257)
43 PRK15174 Vi polysaccharide exp 99.0 6.7E-09 1.5E-13 67.7 9.4 69 1-69 91-159 (656)
44 KOG1155 Anaphase-promoting com 99.0 3.5E-09 7.5E-14 66.2 7.7 69 2-70 380-448 (559)
45 KOG0548 Molecular co-chaperone 99.0 5.5E-09 1.2E-13 65.9 8.4 66 1-66 373-438 (539)
46 PF06552 TOM20_plant: Plant sp 99.0 5.7E-09 1.2E-13 58.3 7.4 66 2-67 51-127 (186)
47 PRK09782 bacteriophage N4 rece 99.0 9E-09 1.9E-13 69.6 9.5 68 1-69 591-658 (987)
48 COG3063 PilF Tfp pilus assembl 99.0 8.2E-09 1.8E-13 59.6 7.8 64 1-64 50-113 (250)
49 PRK10803 tol-pal system protei 99.0 1.5E-08 3.3E-13 59.8 9.1 68 1-68 158-231 (263)
50 PLN03098 LPA1 LOW PSII ACCUMUL 99.0 5E-09 1.1E-13 65.3 7.0 49 1-49 90-141 (453)
51 KOG1125 TPR repeat-containing 98.9 1.6E-09 3.5E-14 68.7 4.9 67 1-67 445-511 (579)
52 PRK15174 Vi polysaccharide exp 98.9 1.6E-08 3.5E-13 65.9 9.3 66 4-69 268-333 (656)
53 COG4783 Putative Zn-dependent 98.9 2E-08 4.3E-13 62.9 8.7 70 1-70 355-424 (484)
54 PRK15179 Vi polysaccharide bio 98.9 1.8E-08 4E-13 66.0 8.9 71 1-71 101-171 (694)
55 KOG1126 DNA-binding cell divis 98.9 1.2E-09 2.5E-14 70.1 3.3 67 2-68 437-503 (638)
56 KOG0547 Translocase of outer m 98.9 8.9E-09 1.9E-13 64.8 7.0 68 1-68 130-197 (606)
57 PLN03098 LPA1 LOW PSII ACCUMUL 98.9 1.3E-08 2.9E-13 63.5 7.3 56 15-70 70-128 (453)
58 COG4235 Cytochrome c biogenesi 98.9 4.8E-08 1E-12 58.1 9.1 70 3-72 139-208 (287)
59 PRK11447 cellulose synthase su 98.9 4.1E-08 9E-13 67.2 9.5 65 1-65 366-430 (1157)
60 PF13429 TPR_15: Tetratricopep 98.9 2.5E-08 5.3E-13 58.9 7.4 69 1-69 125-195 (280)
61 TIGR02521 type_IV_pilW type IV 98.8 1.1E-07 2.3E-12 53.4 9.3 62 2-63 151-212 (234)
62 PF13429 TPR_15: Tetratricopep 98.8 8.5E-09 1.8E-13 60.8 4.9 71 3-73 197-267 (280)
63 TIGR03302 OM_YfiO outer membra 98.8 5.3E-08 1.2E-12 56.0 8.1 65 1-65 48-118 (235)
64 TIGR02795 tol_pal_ybgF tol-pal 98.8 6.9E-08 1.5E-12 49.8 7.5 58 1-58 54-114 (119)
65 PRK15331 chaperone protein Sic 98.8 3.6E-08 7.8E-13 54.4 6.6 66 1-66 52-117 (165)
66 TIGR02917 PEP_TPR_lipo putativ 98.8 6.9E-08 1.5E-12 62.9 9.0 68 1-68 37-104 (899)
67 PLN02789 farnesyltranstransfer 98.8 6.7E-08 1.5E-12 58.5 8.2 67 2-68 53-120 (320)
68 PLN02789 farnesyltranstransfer 98.8 8.5E-08 1.8E-12 58.1 8.6 65 3-67 125-189 (320)
69 PF13181 TPR_8: Tetratricopept 98.8 1.9E-08 4.1E-13 41.6 3.9 33 21-53 2-34 (34)
70 PRK11447 cellulose synthase su 98.8 1.1E-07 2.5E-12 65.1 9.5 68 1-68 618-685 (1157)
71 KOG1128 Uncharacterized conser 98.8 4.6E-08 1E-12 63.8 7.1 71 1-71 500-570 (777)
72 KOG0547 Translocase of outer m 98.8 3.9E-08 8.5E-13 62.0 6.6 63 3-65 377-439 (606)
73 PRK10049 pgaA outer membrane p 98.8 1.6E-07 3.5E-12 62.2 9.6 65 1-65 374-438 (765)
74 TIGR02917 PEP_TPR_lipo putativ 98.8 1.7E-07 3.7E-12 61.1 9.5 69 1-69 751-819 (899)
75 PRK02603 photosystem I assembl 98.7 2.4E-07 5.2E-12 51.4 8.7 54 1-54 87-154 (172)
76 PRK10153 DNA-binding transcrip 98.7 7.8E-08 1.7E-12 61.4 7.6 54 1-55 435-488 (517)
77 PRK10049 pgaA outer membrane p 98.7 1.8E-07 4E-12 61.9 9.4 63 2-65 99-161 (765)
78 KOG1127 TPR repeat-containing 98.7 9.8E-08 2.1E-12 64.2 7.8 66 1-66 17-83 (1238)
79 KOG0624 dsRNA-activated protei 98.7 1.3E-07 2.7E-12 58.0 7.4 70 2-71 323-392 (504)
80 PF13424 TPR_12: Tetratricopep 98.7 2.6E-08 5.7E-13 48.4 3.6 50 1-50 20-76 (78)
81 PF14853 Fis1_TPR_C: Fis1 C-te 98.7 4E-07 8.6E-12 41.6 7.2 47 21-67 2-48 (53)
82 KOG4162 Predicted calmodulin-b 98.7 1.5E-07 3.3E-12 61.7 7.8 69 2-70 700-770 (799)
83 COG3063 PilF Tfp pilus assembl 98.7 1.5E-07 3.2E-12 54.6 6.9 64 2-65 85-150 (250)
84 PRK11788 tetratricopeptide rep 98.7 3.1E-07 6.7E-12 56.0 8.7 65 2-66 196-261 (389)
85 cd00189 TPR Tetratricopeptide 98.7 1.6E-07 3.4E-12 45.4 6.1 52 1-52 49-100 (100)
86 PRK10866 outer membrane biogen 98.7 4.1E-07 8.9E-12 53.2 8.6 54 1-54 47-103 (243)
87 PF13432 TPR_16: Tetratricopep 98.7 1.5E-07 3.2E-12 44.3 5.3 47 24-70 1-47 (65)
88 PRK15331 chaperone protein Sic 98.6 3.8E-07 8.3E-12 50.4 7.3 65 1-66 86-150 (165)
89 KOG1156 N-terminal acetyltrans 98.6 3.6E-07 7.8E-12 59.1 7.7 68 2-69 57-124 (700)
90 PF06552 TOM20_plant: Plant sp 98.6 7.5E-07 1.6E-11 50.0 8.0 70 2-71 7-86 (186)
91 PRK10747 putative protoheme IX 98.6 6.1E-07 1.3E-11 55.6 8.3 69 1-70 309-377 (398)
92 PF12688 TPR_5: Tetratrico pep 98.6 2.4E-06 5.2E-11 45.2 9.2 69 1-69 16-90 (120)
93 KOG2076 RNA polymerase III tra 98.6 3.9E-07 8.5E-12 60.5 7.3 71 1-71 429-500 (895)
94 KOG1125 TPR repeat-containing 98.6 5.4E-07 1.2E-11 57.6 7.6 67 2-68 301-367 (579)
95 TIGR00540 hemY_coli hemY prote 98.6 8.8E-07 1.9E-11 55.0 8.5 68 2-70 315-386 (409)
96 cd05804 StaR_like StaR_like; a 98.6 1E-06 2.2E-11 53.3 8.5 54 1-54 129-182 (355)
97 KOG4234 TPR repeat-containing 98.6 5.8E-07 1.2E-11 51.6 6.8 58 2-59 150-207 (271)
98 COG4783 Putative Zn-dependent 98.5 1.2E-06 2.5E-11 55.2 8.3 70 2-71 322-391 (484)
99 PRK11906 transcriptional regul 98.5 1.5E-06 3.3E-11 54.6 8.6 62 3-64 321-382 (458)
100 TIGR03302 OM_YfiO outer membra 98.5 8.5E-07 1.8E-11 51.0 7.2 57 1-57 85-152 (235)
101 KOG2076 RNA polymerase III tra 98.5 1.6E-06 3.4E-11 57.8 9.0 68 1-68 154-221 (895)
102 KOG4642 Chaperone-dependent E3 98.5 5.7E-07 1.2E-11 52.6 6.0 65 1-65 25-89 (284)
103 PRK11788 tetratricopeptide rep 98.5 2.1E-06 4.5E-11 52.4 8.7 67 2-68 157-228 (389)
104 PRK10803 tol-pal system protei 98.5 2.8E-06 6.2E-11 50.3 8.9 57 1-57 195-254 (263)
105 PF12895 Apc3: Anaphase-promot 98.5 2.1E-07 4.6E-12 45.9 3.4 45 1-46 40-84 (84)
106 PF13512 TPR_18: Tetratricopep 98.5 5.4E-06 1.2E-10 45.0 9.0 54 1-54 25-81 (142)
107 COG4235 Cytochrome c biogenesi 98.5 3.5E-06 7.6E-11 50.3 8.9 60 3-62 210-269 (287)
108 PF13174 TPR_6: Tetratricopept 98.5 4.1E-07 8.9E-12 37.1 3.8 33 21-53 1-33 (33)
109 KOG0548 Molecular co-chaperone 98.4 1.9E-06 4E-11 54.8 7.5 64 1-64 51-114 (539)
110 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 4.5E-06 9.7E-11 52.0 9.1 68 3-70 217-284 (395)
111 PF13176 TPR_7: Tetratricopept 98.4 5.8E-07 1.3E-11 37.8 3.8 28 22-49 1-28 (36)
112 smart00028 TPR Tetratricopepti 98.4 6.2E-07 1.3E-11 35.5 3.8 33 21-53 2-34 (34)
113 KOG3060 Uncharacterized conser 98.4 4.2E-06 9.1E-11 49.4 8.4 66 4-69 138-203 (289)
114 KOG4555 TPR repeat-containing 98.4 5.3E-06 1.2E-10 44.8 7.9 53 1-53 58-110 (175)
115 CHL00033 ycf3 photosystem I as 98.4 6.8E-06 1.5E-10 45.3 8.7 54 1-54 87-154 (168)
116 PF13525 YfiO: Outer membrane 98.4 6.8E-06 1.5E-10 46.8 8.9 54 1-54 20-76 (203)
117 KOG0624 dsRNA-activated protei 98.4 7.3E-07 1.6E-11 54.8 5.1 68 2-69 54-121 (504)
118 PF04733 Coatomer_E: Coatomer 98.4 3.4E-06 7.3E-11 50.6 7.4 69 2-70 183-251 (290)
119 COG1729 Uncharacterized protei 98.4 4.2E-06 9E-11 49.5 7.6 70 1-70 156-231 (262)
120 COG5010 TadD Flp pilus assembl 98.4 6.8E-06 1.5E-10 48.3 8.3 71 1-71 149-219 (257)
121 PRK11906 transcriptional regul 98.4 2.3E-06 5E-11 53.8 6.8 53 2-54 354-406 (458)
122 PF12569 NARP1: NMDA receptor- 98.4 7.8E-06 1.7E-10 52.5 8.9 68 1-68 209-276 (517)
123 KOG1127 TPR repeat-containing 98.4 2.1E-06 4.5E-11 58.2 6.4 65 2-66 578-642 (1238)
124 PF14561 TPR_20: Tetratricopep 98.3 2.6E-05 5.6E-10 39.3 8.7 65 5-69 7-73 (90)
125 PRK14720 transcript cleavage f 98.3 7E-06 1.5E-10 55.5 8.3 64 4-67 100-163 (906)
126 KOG0543 FKBP-type peptidyl-pro 98.3 8.7E-06 1.9E-10 50.4 8.1 70 1-70 223-307 (397)
127 PRK14574 hmsH outer membrane p 98.3 8.6E-06 1.9E-10 54.8 8.6 53 2-54 118-170 (822)
128 COG2956 Predicted N-acetylgluc 98.3 5.5E-06 1.2E-10 50.4 7.0 71 1-71 195-266 (389)
129 KOG4648 Uncharacterized conser 98.3 1.5E-06 3.3E-11 53.5 4.6 63 1-63 112-174 (536)
130 PRK14574 hmsH outer membrane p 98.3 1.7E-05 3.7E-10 53.4 9.5 67 1-67 431-497 (822)
131 KOG2002 TPR-containing nuclear 98.3 5.2E-06 1.1E-10 55.9 6.8 68 1-68 322-390 (1018)
132 PRK10941 hypothetical protein; 98.3 2.9E-05 6.2E-10 46.3 9.3 57 1-57 196-252 (269)
133 KOG2003 TPR repeat-containing 98.3 1.1E-05 2.4E-10 51.4 7.7 69 2-70 540-608 (840)
134 KOG4162 Predicted calmodulin-b 98.2 1E-05 2.2E-10 53.5 7.6 71 3-73 667-737 (799)
135 PRK10747 putative protoheme IX 98.2 3.3E-05 7.1E-10 48.0 9.6 68 1-68 133-201 (398)
136 KOG4234 TPR repeat-containing 98.2 2.4E-05 5.2E-10 45.1 7.8 67 1-67 110-181 (271)
137 KOG1174 Anaphase-promoting com 98.2 1.7E-05 3.7E-10 49.9 7.7 65 2-67 454-518 (564)
138 PF13424 TPR_12: Tetratricopep 98.2 3.5E-06 7.5E-11 40.8 3.9 53 17-69 2-61 (78)
139 PF14559 TPR_19: Tetratricopep 98.2 6.4E-06 1.4E-10 38.8 4.7 41 30-70 1-41 (68)
140 PF09976 TPR_21: Tetratricopep 98.2 4E-05 8.6E-10 41.4 8.1 51 3-53 28-81 (145)
141 cd05804 StaR_like StaR_like; a 98.2 1.9E-05 4.1E-10 47.8 7.3 56 14-69 108-163 (355)
142 PF09976 TPR_21: Tetratricopep 98.2 9.6E-05 2.1E-09 39.9 9.3 69 1-70 63-134 (145)
143 PF13371 TPR_9: Tetratricopept 98.2 8.1E-06 1.8E-10 39.0 4.6 44 27-70 2-45 (73)
144 KOG0550 Molecular chaperone (D 98.2 1.1E-05 2.3E-10 50.5 6.0 60 2-61 265-328 (486)
145 PF13512 TPR_18: Tetratricopep 98.1 3.6E-05 7.8E-10 41.8 6.8 58 1-58 62-137 (142)
146 TIGR00540 hemY_coli hemY prote 98.1 9.1E-05 2E-09 46.2 9.4 65 2-66 134-199 (409)
147 KOG1128 Uncharacterized conser 98.1 8.7E-06 1.9E-10 53.6 4.9 67 1-67 534-600 (777)
148 PF13428 TPR_14: Tetratricopep 98.1 8.2E-06 1.8E-10 35.6 3.5 28 1-28 16-43 (44)
149 PF12569 NARP1: NMDA receptor- 98.0 8.2E-05 1.8E-09 47.9 8.5 67 1-67 19-85 (517)
150 KOG1174 Anaphase-promoting com 98.0 5E-05 1.1E-09 47.8 7.0 68 1-68 315-382 (564)
151 KOG1173 Anaphase-promoting com 98.0 4.8E-05 1.1E-09 49.1 6.9 52 2-53 328-379 (611)
152 KOG0376 Serine-threonine phosp 98.0 4E-06 8.6E-11 52.8 2.1 53 2-54 20-72 (476)
153 PF13431 TPR_17: Tetratricopep 98.0 1E-05 2.2E-10 33.6 2.7 30 42-71 1-30 (34)
154 COG4785 NlpI Lipoprotein NlpI, 98.0 4.2E-05 9.2E-10 44.7 5.9 55 4-58 83-137 (297)
155 KOG3824 Huntingtin interacting 98.0 3.5E-05 7.7E-10 47.0 5.7 58 2-59 132-189 (472)
156 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 3.3E-05 7.2E-10 48.2 5.7 54 1-54 249-302 (395)
157 PRK10153 DNA-binding transcrip 98.0 0.00013 2.8E-09 47.1 8.5 67 3-70 401-469 (517)
158 KOG0550 Molecular chaperone (D 98.0 1.1E-05 2.3E-10 50.5 3.5 57 1-57 64-120 (486)
159 PF13374 TPR_10: Tetratricopep 97.9 3.7E-05 8.1E-10 32.6 4.3 30 20-49 2-31 (42)
160 COG3071 HemY Uncharacterized e 97.9 0.00018 3.8E-09 44.8 8.1 69 2-71 310-378 (400)
161 PF04733 Coatomer_E: Coatomer 97.9 4.9E-05 1.1E-09 45.7 5.7 60 1-60 216-276 (290)
162 KOG1156 N-terminal acetyltrans 97.9 0.00012 2.7E-09 47.9 7.5 63 1-63 90-152 (700)
163 KOG3364 Membrane protein invol 97.9 0.00025 5.4E-09 38.4 7.3 67 2-68 51-122 (149)
164 KOG2002 TPR-containing nuclear 97.9 2E-05 4.3E-10 53.3 3.7 67 2-68 662-730 (1018)
165 KOG0376 Serine-threonine phosp 97.9 4.3E-05 9.3E-10 48.4 5.0 73 1-73 53-125 (476)
166 KOG1129 TPR repeat-containing 97.9 2.2E-05 4.8E-10 48.2 3.6 47 3-49 341-387 (478)
167 PF03704 BTAD: Bacterial trans 97.9 0.00017 3.7E-09 38.8 6.8 48 1-48 77-124 (146)
168 PF10373 EST1_DNA_bind: Est1 D 97.8 0.00025 5.4E-09 41.7 7.9 62 5-66 1-62 (278)
169 KOG0551 Hsp90 co-chaperone CNS 97.8 0.00026 5.6E-09 43.5 7.7 59 1-59 96-158 (390)
170 COG4976 Predicted methyltransf 97.8 8.4E-05 1.8E-09 43.6 5.1 56 1-56 10-65 (287)
171 PF09613 HrpB1_HrpK: Bacterial 97.8 0.001 2.3E-08 36.9 9.1 68 2-69 26-93 (160)
172 COG4785 NlpI Lipoprotein NlpI, 97.8 4.5E-05 9.8E-10 44.5 3.9 59 1-59 114-172 (297)
173 KOG2003 TPR repeat-containing 97.8 0.00023 5E-09 45.7 7.2 65 2-66 574-638 (840)
174 KOG3060 Uncharacterized conser 97.8 0.00071 1.5E-08 40.3 8.5 68 2-69 68-135 (289)
175 KOG1129 TPR repeat-containing 97.7 7E-05 1.5E-09 46.1 4.4 62 2-63 306-367 (478)
176 KOG4340 Uncharacterized conser 97.7 0.00023 5E-09 43.5 6.3 56 1-56 25-80 (459)
177 COG4105 ComL DNA uptake lipopr 97.7 0.00036 7.8E-09 41.2 6.5 54 1-54 49-105 (254)
178 KOG0495 HAT repeat protein [RN 97.7 0.00044 9.6E-09 45.9 7.4 67 2-68 667-733 (913)
179 PRK10866 outer membrane biogen 97.7 0.00084 1.8E-08 39.5 8.0 68 1-68 84-175 (243)
180 KOG3081 Vesicle coat complex C 97.7 0.00094 2E-08 40.0 8.1 68 2-69 189-256 (299)
181 KOG1840 Kinesin light chain [C 97.6 0.00055 1.2E-08 44.2 7.4 68 1-68 214-297 (508)
182 PF12688 TPR_5: Tetratrico pep 97.6 0.00091 2E-08 35.4 7.0 48 1-48 53-103 (120)
183 COG1729 Uncharacterized protei 97.6 0.0017 3.6E-08 38.7 8.5 57 1-57 193-252 (262)
184 PRK14720 transcript cleavage f 97.6 0.00037 8.1E-09 47.5 6.1 48 1-49 131-178 (906)
185 TIGR02561 HrpB1_HrpK type III 97.5 0.0025 5.5E-08 35.0 7.9 69 1-69 25-93 (153)
186 COG2956 Predicted N-acetylgluc 97.5 0.001 2.2E-08 40.9 6.9 69 1-69 156-229 (389)
187 PF03704 BTAD: Bacterial trans 97.5 0.0038 8.3E-08 33.5 9.1 51 20-70 62-112 (146)
188 PF13525 YfiO: Outer membrane 97.5 0.00083 1.8E-08 38.3 6.3 67 1-67 57-140 (203)
189 PF07720 TPR_3: Tetratricopept 97.5 0.00089 1.9E-08 28.1 4.6 34 20-53 1-36 (36)
190 KOG1840 Kinesin light chain [C 97.4 0.00042 9.1E-09 44.7 4.5 50 1-50 256-313 (508)
191 KOG2796 Uncharacterized conser 97.4 0.00059 1.3E-08 41.1 4.7 54 1-54 267-320 (366)
192 KOG4507 Uncharacterized conser 97.3 0.0012 2.7E-08 43.5 6.1 58 3-60 659-716 (886)
193 KOG4642 Chaperone-dependent E3 97.3 0.0004 8.7E-09 41.0 3.5 48 2-49 60-107 (284)
194 KOG1308 Hsp70-interacting prot 97.3 3.6E-05 7.8E-10 47.1 -1.0 53 2-54 130-182 (377)
195 KOG0545 Aryl-hydrocarbon recep 97.3 0.0037 7.9E-08 37.4 7.2 53 2-54 246-298 (329)
196 COG2912 Uncharacterized conser 97.3 0.0032 7E-08 37.6 7.0 57 1-57 196-252 (269)
197 PF05843 Suf: Suppressor of fo 97.2 0.0047 1E-07 37.0 7.8 64 3-66 18-82 (280)
198 PF07721 TPR_4: Tetratricopept 97.2 0.00087 1.9E-08 25.9 2.8 24 21-44 2-25 (26)
199 KOG0551 Hsp90 co-chaperone CNS 97.2 0.0014 3E-08 40.4 4.9 56 1-56 134-189 (390)
200 PF10516 SHNi-TPR: SHNi-TPR; 97.1 0.0012 2.7E-08 28.0 3.2 30 21-50 2-31 (38)
201 KOG3785 Uncharacterized conser 97.1 0.0084 1.8E-07 37.7 7.9 64 2-65 167-230 (557)
202 KOG2471 TPR repeat-containing 97.1 0.0058 1.3E-07 39.7 7.3 50 18-67 333-382 (696)
203 PF05843 Suf: Suppressor of fo 97.1 0.011 2.4E-07 35.4 8.1 53 2-54 52-104 (280)
204 KOG0545 Aryl-hydrocarbon recep 97.0 0.0067 1.5E-07 36.3 6.5 63 1-63 193-273 (329)
205 KOG0495 HAT repeat protein [RN 97.0 0.0071 1.5E-07 40.6 7.0 69 2-71 634-702 (913)
206 KOG2396 HAT (Half-A-TPR) repea 97.0 0.009 2E-07 38.7 7.2 54 3-56 122-176 (568)
207 KOG4648 Uncharacterized conser 96.9 0.0047 1E-07 38.7 5.8 59 2-60 147-205 (536)
208 PF09986 DUF2225: Uncharacteri 96.9 0.023 5.1E-07 33.0 8.2 52 2-53 141-198 (214)
209 PF12862 Apc5: Anaphase-promot 96.8 0.015 3.2E-07 29.3 6.4 51 1-51 13-72 (94)
210 KOG3081 Vesicle coat complex C 96.8 0.012 2.7E-07 35.4 6.8 58 1-58 222-280 (299)
211 KOG4814 Uncharacterized conser 96.8 0.014 3E-07 39.1 7.4 68 1-68 369-442 (872)
212 PF00515 TPR_1: Tetratricopept 96.8 0.0015 3.3E-08 26.4 2.0 19 1-19 16-34 (34)
213 PF07719 TPR_2: Tetratricopept 96.7 0.0026 5.6E-08 25.5 2.7 19 1-19 16-34 (34)
214 PF14863 Alkyl_sulf_dimr: Alky 96.7 0.027 6E-07 30.7 6.9 62 10-72 61-122 (141)
215 PF14938 SNAP: Soluble NSF att 96.6 0.0085 1.8E-07 35.8 5.1 50 1-50 130-185 (282)
216 COG4455 ImpE Protein of avirul 96.5 0.036 7.8E-07 32.8 7.1 55 2-56 17-71 (273)
217 KOG4555 TPR repeat-containing 96.5 0.05 1.1E-06 29.8 8.1 52 2-53 93-148 (175)
218 COG4700 Uncharacterized protei 96.5 0.038 8.2E-07 32.0 6.9 66 2-68 140-207 (251)
219 PF08424 NRDE-2: NRDE-2, neces 96.4 0.094 2E-06 32.2 9.4 59 3-61 48-106 (321)
220 PLN03081 pentatricopeptide (PP 96.4 0.026 5.6E-07 37.7 7.0 48 20-67 494-541 (697)
221 KOG3785 Uncharacterized conser 96.4 0.035 7.6E-07 35.1 7.0 53 2-54 38-91 (557)
222 PF04184 ST7: ST7 protein; In 96.4 0.041 8.8E-07 35.8 7.4 47 20-66 259-307 (539)
223 COG0457 NrfG FOG: TPR repeat [ 96.4 0.058 1.3E-06 29.1 8.5 51 2-52 183-234 (291)
224 PF11846 DUF3366: Domain of un 96.4 0.061 1.3E-06 30.4 7.4 54 3-57 128-181 (193)
225 KOG2053 Mitochondrial inherita 96.3 0.066 1.4E-06 36.9 8.3 50 3-52 60-109 (932)
226 KOG0529 Protein geranylgeranyl 96.3 0.048 1E-06 34.6 7.2 62 3-64 92-155 (421)
227 COG4700 Uncharacterized protei 96.2 0.075 1.6E-06 30.8 7.2 68 2-69 105-175 (251)
228 KOG1310 WD40 repeat protein [G 96.2 0.033 7.2E-07 36.7 6.4 67 3-69 391-460 (758)
229 COG5191 Uncharacterized conser 96.2 0.011 2.3E-07 36.6 3.9 55 3-57 124-179 (435)
230 PLN03081 pentatricopeptide (PP 96.2 0.065 1.4E-06 35.8 7.8 48 2-49 510-557 (697)
231 PF07079 DUF1347: Protein of u 96.2 0.088 1.9E-06 34.1 7.9 49 2-54 478-526 (549)
232 KOG2053 Mitochondrial inherita 96.1 0.074 1.6E-06 36.7 7.8 69 2-70 25-93 (932)
233 COG0457 NrfG FOG: TPR repeat [ 96.1 0.087 1.9E-06 28.4 8.3 49 3-51 112-161 (291)
234 PLN03077 Protein ECB2; Provisi 96.1 0.07 1.5E-06 36.5 7.6 44 2-45 605-650 (857)
235 TIGR03504 FimV_Cterm FimV C-te 96.0 0.044 9.5E-07 24.0 4.7 26 23-48 2-27 (44)
236 PLN03218 maturation of RBCL 1; 95.9 0.18 3.9E-06 35.8 9.2 46 3-48 596-642 (1060)
237 KOG2376 Signal recognition par 95.9 0.073 1.6E-06 35.3 6.9 50 2-54 95-144 (652)
238 KOG2610 Uncharacterized conser 95.8 0.12 2.6E-06 32.5 7.1 63 7-69 158-224 (491)
239 PF10300 DUF3808: Protein of u 95.7 0.092 2E-06 33.9 6.7 50 2-51 283-336 (468)
240 PF14938 SNAP: Soluble NSF att 95.7 0.22 4.8E-06 29.8 9.3 54 1-54 170-230 (282)
241 KOG1308 Hsp70-interacting prot 95.7 0.014 3E-07 36.3 2.8 51 2-52 164-214 (377)
242 PF10579 Rapsyn_N: Rapsyn N-te 95.6 0.11 2.3E-06 25.7 5.7 40 3-42 23-65 (80)
243 COG3118 Thioredoxin domain-con 95.6 0.07 1.5E-06 32.6 5.6 45 1-45 149-193 (304)
244 cd02681 MIT_calpain7_1 MIT: do 95.5 0.047 1E-06 26.7 3.9 30 4-48 5-34 (76)
245 KOG4340 Uncharacterized conser 95.5 0.094 2E-06 32.6 5.8 48 1-48 159-206 (459)
246 KOG2396 HAT (Half-A-TPR) repea 95.5 0.16 3.5E-06 33.3 7.1 58 4-61 89-146 (568)
247 PF04781 DUF627: Protein of un 95.5 0.16 3.5E-06 26.7 6.9 63 1-63 11-87 (111)
248 cd02682 MIT_AAA_Arch MIT: doma 95.4 0.13 2.8E-06 25.1 6.4 36 4-54 5-47 (75)
249 PF04212 MIT: MIT (microtubule 95.3 0.062 1.3E-06 25.5 4.0 20 30-49 15-34 (69)
250 PLN03218 maturation of RBCL 1; 95.2 0.51 1.1E-05 33.6 9.4 49 2-50 558-609 (1060)
251 PF13281 DUF4071: Domain of un 95.2 0.13 2.7E-06 32.5 6.0 54 1-54 197-260 (374)
252 PF14853 Fis1_TPR_C: Fis1 C-te 95.2 0.099 2.2E-06 23.8 4.2 29 1-29 16-44 (53)
253 PF10300 DUF3808: Protein of u 95.2 0.21 4.4E-06 32.3 7.0 49 2-50 249-297 (468)
254 PF04781 DUF627: Protein of un 95.1 0.075 1.6E-06 27.9 4.1 48 3-50 61-108 (111)
255 KOG1915 Cell cycle control pro 95.1 0.22 4.7E-06 32.8 6.8 54 2-55 89-142 (677)
256 KOG0546 HSP90 co-chaperone CPR 95.1 0.031 6.7E-07 34.8 3.0 57 9-65 298-354 (372)
257 cd02680 MIT_calpain7_2 MIT: do 95.0 0.086 1.9E-06 25.8 3.9 33 2-49 3-35 (75)
258 PRK13184 pknD serine/threonine 94.9 0.21 4.6E-06 35.0 6.9 52 2-54 535-586 (932)
259 PF04910 Tcf25: Transcriptiona 94.9 0.18 3.9E-06 31.5 6.1 38 11-48 31-68 (360)
260 COG3629 DnrI DNA-binding trans 94.9 0.23 4.9E-06 30.2 6.3 48 2-49 169-216 (280)
261 PLN03077 Protein ECB2; Provisi 94.9 0.14 3E-06 35.1 6.0 45 20-64 657-701 (857)
262 smart00386 HAT HAT (Half-A-TPR 94.9 0.088 1.9E-06 20.4 4.2 27 2-28 3-29 (33)
263 COG3071 HemY Uncharacterized e 94.9 0.58 1.3E-05 29.8 8.5 65 2-66 134-199 (400)
264 KOG2376 Signal recognition par 94.8 0.14 3E-06 34.1 5.6 47 1-47 27-73 (652)
265 KOG1130 Predicted G-alpha GTPa 94.8 0.037 7.9E-07 35.6 2.9 49 1-49 210-264 (639)
266 PF08424 NRDE-2: NRDE-2, neces 94.7 0.54 1.2E-05 28.9 7.9 58 7-64 6-75 (321)
267 PRK10941 hypothetical protein; 94.7 0.33 7.1E-06 29.3 6.6 47 21-67 182-228 (269)
268 cd02683 MIT_1 MIT: domain cont 94.6 0.11 2.4E-06 25.4 3.8 37 3-54 4-47 (77)
269 KOG1941 Acetylcholine receptor 94.6 0.14 3.1E-06 32.6 4.9 49 1-49 177-235 (518)
270 KOG3824 Huntingtin interacting 94.5 0.35 7.7E-06 30.2 6.5 41 25-65 121-161 (472)
271 cd02679 MIT_spastin MIT: domai 94.5 0.15 3.3E-06 25.1 4.1 25 25-49 13-37 (79)
272 COG3118 Thioredoxin domain-con 94.5 0.64 1.4E-05 28.6 8.1 60 8-67 224-285 (304)
273 KOG1915 Cell cycle control pro 94.5 0.2 4.4E-06 32.9 5.6 50 2-51 453-502 (677)
274 PF13226 DUF4034: Domain of un 94.3 0.67 1.5E-05 28.2 7.7 65 5-69 62-148 (277)
275 COG3947 Response regulator con 94.3 0.35 7.6E-06 29.9 6.0 49 21-69 280-328 (361)
276 PF10579 Rapsyn_N: Rapsyn N-te 94.3 0.31 6.8E-06 24.1 5.6 45 22-66 8-52 (80)
277 PF13281 DUF4071: Domain of un 94.1 0.88 1.9E-05 28.8 8.7 54 17-70 176-233 (374)
278 PF12854 PPR_1: PPR repeat 94.1 0.17 3.7E-06 20.6 4.3 28 18-45 5-32 (34)
279 KOG1310 WD40 repeat protein [G 94.1 0.12 2.6E-06 34.3 4.1 52 3-54 428-479 (758)
280 COG2976 Uncharacterized protei 94.0 0.65 1.4E-05 27.0 6.5 33 22-54 161-193 (207)
281 PF09205 DUF1955: Domain of un 94.0 0.53 1.2E-05 25.9 6.2 45 6-50 106-150 (161)
282 PRK04841 transcriptional regul 94.0 0.24 5.2E-06 33.9 5.6 53 1-53 706-764 (903)
283 KOG1070 rRNA processing protei 94.0 0.37 8.1E-06 35.3 6.5 51 2-52 1546-1596(1710)
284 smart00386 HAT HAT (Half-A-TPR 94.0 0.16 3.4E-06 19.6 4.2 29 34-62 1-29 (33)
285 PF02259 FAT: FAT domain; Int 93.8 0.41 9E-06 29.0 5.9 51 2-52 274-341 (352)
286 PF11207 DUF2989: Protein of u 93.7 0.37 8.1E-06 27.9 5.2 51 18-69 139-193 (203)
287 PF09797 NatB_MDM20: N-acetylt 93.6 0.45 9.8E-06 29.6 5.9 43 3-45 200-242 (365)
288 cd02678 MIT_VPS4 MIT: domain c 93.5 0.29 6.4E-06 23.6 4.1 31 3-48 4-34 (75)
289 KOG2610 Uncharacterized conser 93.5 0.31 6.8E-06 30.8 4.9 45 2-46 191-235 (491)
290 KOG2796 Uncharacterized conser 93.5 0.46 1E-05 29.1 5.5 56 2-57 228-289 (366)
291 cd02684 MIT_2 MIT: domain cont 93.3 0.3 6.6E-06 23.7 3.9 32 2-48 3-34 (75)
292 PF08631 SPO22: Meiosis protei 93.3 0.81 1.8E-05 27.5 6.5 49 1-49 8-65 (278)
293 PF10602 RPN7: 26S proteasome 93.3 0.68 1.5E-05 26.1 5.8 33 20-52 36-68 (177)
294 PRK04841 transcriptional regul 93.2 1.1 2.4E-05 30.8 7.6 50 1-50 467-521 (903)
295 KOG1130 Predicted G-alpha GTPa 93.1 1 2.2E-05 29.4 6.8 71 2-72 291-373 (639)
296 PF04910 Tcf25: Transcriptiona 93.0 0.71 1.5E-05 29.0 6.1 45 20-64 103-148 (360)
297 smart00745 MIT Microtubule Int 93.0 0.4 8.7E-06 23.0 4.1 19 30-48 18-36 (77)
298 cd02677 MIT_SNX15 MIT: domain 92.8 0.34 7.3E-06 23.6 3.6 31 3-48 4-34 (75)
299 PF01535 PPR: PPR repeat; Int 92.4 0.31 6.7E-06 18.6 3.1 27 22-48 2-28 (31)
300 COG4105 ComL DNA uptake lipopr 92.3 1.1 2.4E-05 26.9 6.0 40 18-57 32-71 (254)
301 KOG0530 Protein farnesyltransf 92.3 1.6 3.6E-05 26.7 7.3 66 3-68 60-126 (318)
302 COG3629 DnrI DNA-binding trans 92.2 1.7 3.7E-05 26.5 7.7 51 19-69 152-202 (280)
303 smart00671 SEL1 Sel1-like repe 92.1 0.39 8.5E-06 19.1 3.6 30 21-50 2-35 (36)
304 cd02656 MIT MIT: domain contai 91.8 0.73 1.6E-05 22.1 4.2 17 32-48 18-34 (75)
305 PF04184 ST7: ST7 protein; In 91.8 1.4 2.9E-05 29.2 6.3 46 1-46 274-321 (539)
306 PF14852 Fis1_TPR_N: Fis1 N-te 91.5 0.54 1.2E-05 19.5 4.2 32 20-51 1-35 (35)
307 PF08238 Sel1: Sel1 repeat; I 91.4 0.52 1.1E-05 19.1 4.0 31 20-50 1-38 (39)
308 COG4259 Uncharacterized protei 91.4 0.89 1.9E-05 23.7 4.3 43 18-60 70-112 (121)
309 KOG4507 Uncharacterized conser 91.4 1.9 4.2E-05 29.4 6.8 62 8-69 201-264 (886)
310 PF02064 MAS20: MAS20 protein 91.3 1 2.3E-05 24.0 4.7 40 24-63 67-106 (121)
311 PF12968 DUF3856: Domain of Un 91.3 1.4 3E-05 23.8 5.8 48 2-49 25-84 (144)
312 PF15015 NYD-SP12_N: Spermatog 91.3 2.1 4.5E-05 28.0 6.6 33 22-54 230-262 (569)
313 KOG1464 COP9 signalosome, subu 91.0 2.2 4.7E-05 26.5 6.3 48 2-49 43-94 (440)
314 COG0790 FOG: TPR repeat, SEL1 90.9 2.2 4.9E-05 25.4 7.7 63 2-66 93-160 (292)
315 KOG0530 Protein farnesyltransf 90.9 2.5 5.4E-05 26.0 7.6 66 3-68 95-161 (318)
316 PF13041 PPR_2: PPR repeat fam 90.8 0.78 1.7E-05 19.9 4.4 32 19-50 2-33 (50)
317 PF12968 DUF3856: Domain of Un 90.7 1.6 3.6E-05 23.6 5.8 47 3-49 79-129 (144)
318 PF09613 HrpB1_HrpK: Bacterial 90.7 1.9 4.1E-05 24.2 8.6 50 1-51 59-108 (160)
319 COG3898 Uncharacterized membra 90.6 3.1 6.8E-05 27.0 6.9 53 2-54 245-297 (531)
320 KOG2997 F-box protein FBX9 [Ge 90.6 1.1 2.4E-05 28.0 4.8 39 20-58 19-57 (366)
321 COG3947 Response regulator con 90.5 1.2 2.6E-05 27.7 5.0 44 2-45 295-338 (361)
322 COG0790 FOG: TPR repeat, SEL1 90.4 2.5 5.4E-05 25.2 6.7 46 4-51 173-222 (292)
323 KOG1941 Acetylcholine receptor 90.2 0.77 1.7E-05 29.4 4.0 48 3-50 223-276 (518)
324 PF10255 Paf67: RNA polymerase 90.1 0.35 7.6E-06 30.9 2.6 31 18-48 162-192 (404)
325 PF12753 Nro1: Nuclear pore co 89.9 0.85 1.8E-05 29.1 4.1 46 2-49 334-391 (404)
326 COG3914 Spy Predicted O-linked 89.8 4.4 9.5E-05 27.4 7.3 57 4-60 85-142 (620)
327 KOG1070 rRNA processing protei 89.1 5.7 0.00012 29.8 7.8 46 5-50 1619-1664(1710)
328 TIGR00756 PPR pentatricopeptid 88.9 0.83 1.8E-05 17.6 3.8 27 23-49 3-29 (35)
329 TIGR02561 HrpB1_HrpK type III 88.9 2.7 5.8E-05 23.4 6.8 41 1-41 59-99 (153)
330 PF02259 FAT: FAT domain; Int 88.8 3.3 7.1E-05 25.1 6.1 49 20-68 252-306 (352)
331 PF05053 Menin: Menin; InterP 86.9 2.6 5.7E-05 28.3 5.0 45 4-48 297-346 (618)
332 KOG1550 Extracellular protein 86.6 6.6 0.00014 26.2 6.7 46 2-49 309-357 (552)
333 PF15297 CKAP2_C: Cytoskeleton 86.5 6.3 0.00014 25.0 8.6 62 4-65 121-186 (353)
334 PF13812 PPR_3: Pentatricopept 86.3 1.3 2.9E-05 17.1 4.1 27 22-48 3-29 (34)
335 PF14863 Alkyl_sulf_dimr: Alky 86.2 2.5 5.4E-05 23.2 4.1 38 1-38 85-122 (141)
336 COG2015 Alkyl sulfatase and re 85.9 5.8 0.00012 26.6 6.1 50 22-71 454-503 (655)
337 KOG1914 mRNA cleavage and poly 85.9 5.2 0.00011 27.0 5.9 45 3-47 36-80 (656)
338 KOG2422 Uncharacterized conser 85.5 4.9 0.00011 27.3 5.6 43 22-64 344-387 (665)
339 PF01239 PPTA: Protein prenylt 85.3 1.6 3.5E-05 17.1 4.7 26 6-31 3-28 (31)
340 PF04190 DUF410: Protein of un 85.0 3.4 7.3E-05 24.8 4.6 26 18-43 88-113 (260)
341 KOG4151 Myosin assembly protei 84.8 6.2 0.00013 27.5 6.0 58 1-58 108-165 (748)
342 KOG1550 Extracellular protein 84.5 7.9 0.00017 25.8 6.4 64 1-66 264-337 (552)
343 TIGR00985 3a0801s04tom mitocho 84.4 4.2 9E-05 22.6 4.4 39 24-62 94-133 (148)
344 KOG1586 Protein required for f 84.2 7.2 0.00016 23.7 7.6 67 2-68 170-245 (288)
345 PF08311 Mad3_BUB1_I: Mad3/BUB 84.1 4.7 0.0001 21.5 5.6 44 4-47 81-126 (126)
346 PF10345 Cohesin_load: Cohesin 82.7 12 0.00027 25.2 8.2 36 19-54 403-446 (608)
347 PF11817 Foie-gras_1: Foie gra 82.5 7.9 0.00017 22.9 5.7 33 20-52 178-210 (247)
348 PF10366 Vps39_1: Vacuolar sor 82.4 4.3 9.4E-05 21.1 3.8 28 21-48 40-67 (108)
349 KOG1586 Protein required for f 82.1 9 0.0002 23.3 7.0 54 1-54 129-188 (288)
350 KOG2047 mRNA splicing factor [ 81.8 5.2 0.00011 27.7 4.7 49 3-51 494-542 (835)
351 KOG1585 Protein required for f 81.8 9.6 0.00021 23.4 5.5 21 30-50 120-140 (308)
352 TIGR02996 rpt_mate_G_obs repea 81.2 3.5 7.5E-05 17.9 4.1 32 8-39 4-35 (42)
353 PF13830 DUF4192: Domain of un 80.4 11 0.00024 23.2 7.6 55 3-57 255-311 (324)
354 PF04053 Coatomer_WDAD: Coatom 80.1 4.1 9E-05 26.5 3.9 31 18-48 345-375 (443)
355 COG4941 Predicted RNA polymera 80.1 13 0.00028 23.8 6.8 39 19-57 364-402 (415)
356 PF10373 EST1_DNA_bind: Est1 D 79.3 3.2 6.9E-05 24.4 3.0 30 39-68 1-30 (278)
357 COG2976 Uncharacterized protei 79.3 10 0.00023 22.2 5.1 42 2-43 105-149 (207)
358 PF11207 DUF2989: Protein of u 79.0 11 0.00023 22.1 8.4 40 1-40 155-198 (203)
359 KOG2581 26S proteasome regulat 78.6 11 0.00023 24.8 5.2 35 20-54 247-281 (493)
360 KOG1914 mRNA cleavage and poly 78.5 18 0.0004 24.6 7.7 48 2-49 417-464 (656)
361 KOG1585 Protein required for f 78.3 11 0.00024 23.1 5.0 49 1-49 46-100 (308)
362 PF02184 HAT: HAT (Half-A-TPR) 78.1 3.9 8.4E-05 16.6 3.2 22 3-25 4-25 (32)
363 PRK15180 Vi polysaccharide bio 77.5 20 0.00042 24.4 6.6 61 7-68 763-824 (831)
364 KOG2709 Uncharacterized conser 77.4 3.8 8.3E-05 26.8 3.0 30 20-49 22-51 (560)
365 PHA02537 M terminase endonucle 77.4 5.8 0.00013 23.6 3.6 33 21-53 170-211 (230)
366 PF12583 TPPII_N: Tripeptidyl 77.4 9.7 0.00021 20.8 5.4 39 28-66 84-122 (139)
367 smart00101 14_3_3 14-3-3 homol 77.4 13 0.00028 22.3 6.6 46 3-48 145-199 (244)
368 PF10952 DUF2753: Protein of u 76.7 5.8 0.00012 21.6 3.2 29 22-50 3-31 (140)
369 COG5191 Uncharacterized conser 76.5 3.5 7.6E-05 26.1 2.7 44 11-54 98-141 (435)
370 PF09986 DUF2225: Uncharacteri 76.2 7.9 0.00017 22.6 4.0 68 2-69 93-180 (214)
371 PF08631 SPO22: Meiosis protei 76.0 7.1 0.00015 23.5 3.9 27 21-47 247-273 (278)
372 PF12583 TPPII_N: Tripeptidyl 75.9 9 0.0002 21.0 3.8 29 2-30 92-120 (139)
373 PF12925 APP_E2: E2 domain of 75.6 11 0.00024 21.9 4.4 52 3-54 114-167 (193)
374 PF00244 14-3-3: 14-3-3 protei 75.3 6.1 0.00013 23.4 3.4 46 3-48 143-197 (236)
375 PF06051 DUF928: Domain of Unk 75.2 13 0.00029 21.3 5.5 51 24-74 135-185 (189)
376 COG4649 Uncharacterized protei 74.9 14 0.00031 21.5 5.9 29 20-48 167-195 (221)
377 COG2912 Uncharacterized conser 74.8 15 0.00033 22.4 5.0 35 22-56 183-217 (269)
378 KOG4056 Translocase of outer m 74.2 13 0.00027 20.5 4.5 34 24-57 85-118 (143)
379 KOG0529 Protein geranylgeranyl 73.6 22 0.00048 23.2 7.1 70 2-71 127-200 (421)
380 PF07079 DUF1347: Protein of u 73.4 21 0.00046 23.8 5.6 46 20-66 460-507 (549)
381 KOG0292 Vesicle coat complex C 70.2 23 0.00051 25.7 5.5 32 18-49 670-701 (1202)
382 PF14689 SPOB_a: Sensor_kinase 69.9 9.9 0.00022 17.6 4.2 40 9-48 12-51 (62)
383 COG3914 Spy Predicted O-linked 68.8 35 0.00076 23.5 7.7 59 5-63 121-185 (620)
384 PF07980 SusD: SusD family; I 68.8 18 0.00039 21.0 4.4 30 20-49 133-162 (266)
385 PF13006 Nterm_IS4: Insertion 68.8 14 0.00031 19.0 3.5 53 17-69 36-89 (98)
386 KOG3540 Beta amyloid precursor 68.7 33 0.00071 23.1 7.2 52 3-54 329-382 (615)
387 KOG0739 AAA+-type ATPase [Post 66.8 15 0.00031 23.4 3.7 42 3-54 8-51 (439)
388 KOG2422 Uncharacterized conser 65.6 42 0.00091 23.2 6.1 47 2-48 254-312 (665)
389 PF10602 RPN7: 26S proteasome 65.3 23 0.00049 20.0 6.2 50 1-50 51-103 (177)
390 KOG2471 TPR repeat-containing 65.3 29 0.00063 23.6 5.0 31 21-51 620-650 (696)
391 cd00280 TRFH Telomeric Repeat 64.9 26 0.00056 20.5 8.7 39 26-65 117-155 (200)
392 KOG1811 Predicted Zn2+-binding 64.7 27 0.00058 24.5 4.9 37 17-53 584-620 (1141)
393 PRK15490 Vi polysaccharide bio 63.8 45 0.00097 22.9 6.6 35 19-53 41-75 (578)
394 PRK15180 Vi polysaccharide bio 63.7 36 0.00077 23.2 5.2 45 4-48 307-351 (831)
395 COG5107 RNA14 Pre-mRNA 3'-end 63.5 43 0.00094 22.6 5.7 51 8-58 30-80 (660)
396 KOG2114 Vacuolar assembly/sort 63.1 18 0.00038 25.9 3.9 33 20-52 368-401 (933)
397 KOG3617 WD40 and TPR repeat-co 62.6 17 0.00036 26.4 3.7 35 15-49 962-996 (1416)
398 COG5091 SGT1 Suppressor of G2 61.9 30 0.00066 21.6 4.4 64 4-67 57-128 (368)
399 KOG4814 Uncharacterized conser 61.5 55 0.0012 23.1 6.2 48 2-49 410-457 (872)
400 KOG4014 Uncharacterized conser 60.9 32 0.0007 20.3 6.3 60 2-65 128-211 (248)
401 PF15015 NYD-SP12_N: Spermatog 60.4 29 0.00064 23.1 4.4 45 3-47 245-289 (569)
402 PF00244 14-3-3: 14-3-3 protei 60.4 34 0.00073 20.3 5.7 32 23-54 4-35 (236)
403 KOG2300 Uncharacterized conser 60.4 51 0.0011 22.4 6.4 59 2-60 63-129 (629)
404 PF07219 HemY_N: HemY protein 59.6 23 0.0005 18.2 6.5 43 20-62 59-101 (108)
405 KOG0276 Vesicle coat complex C 58.9 42 0.00091 23.4 5.0 33 17-49 663-695 (794)
406 COG4976 Predicted methyltransf 58.3 11 0.00023 23.0 2.1 37 29-65 4-40 (287)
407 KOG2300 Uncharacterized conser 57.6 58 0.0013 22.2 5.7 31 20-50 445-475 (629)
408 KOG3783 Uncharacterized conser 57.0 60 0.0013 22.1 6.5 52 3-54 466-525 (546)
409 KOG2518 5'-3' exonuclease [Rep 56.9 19 0.00041 24.3 3.1 31 22-52 98-128 (556)
410 KOG2063 Vacuolar assembly/sort 55.4 67 0.0014 23.3 5.6 30 21-50 505-534 (877)
411 PRK15326 type III secretion sy 55.3 26 0.00056 17.4 5.1 16 39-54 26-41 (80)
412 KOG2460 Signal recognition par 54.8 17 0.00036 24.6 2.7 28 22-49 424-451 (593)
413 KOG0686 COP9 signalosome, subu 54.7 60 0.0013 21.5 5.2 30 20-49 150-179 (466)
414 PF09670 Cas_Cas02710: CRISPR- 53.8 56 0.0012 20.9 6.7 50 1-50 146-199 (379)
415 KOG0687 26S proteasome regulat 53.8 58 0.0013 21.0 4.8 30 20-49 104-133 (393)
416 PF12921 ATP13: Mitochondrial 53.5 34 0.00074 18.3 4.5 32 20-51 52-83 (126)
417 KOG1538 Uncharacterized conser 53.2 13 0.00029 26.0 2.1 43 2-47 789-831 (1081)
418 PF11817 Foie-gras_1: Foie gra 51.5 50 0.0011 19.6 6.2 46 1-46 193-244 (247)
419 PF08626 TRAPPC9-Trs120: Trans 51.2 93 0.002 23.2 6.0 30 20-49 242-271 (1185)
420 KOG3617 WD40 and TPR repeat-co 50.9 65 0.0014 23.7 5.0 27 20-46 858-884 (1416)
421 PRK15490 Vi polysaccharide bio 50.7 80 0.0017 21.7 5.3 46 2-52 58-103 (578)
422 KOG1839 Uncharacterized protei 50.5 26 0.00057 26.1 3.2 45 5-49 957-1002(1236)
423 KOG2162 Nonsense-mediated mRNA 50.0 63 0.0014 23.3 4.9 65 2-66 151-215 (862)
424 PF15469 Sec5: Exocyst complex 49.8 23 0.0005 19.9 2.5 22 30-51 96-117 (182)
425 KOG2758 Translation initiation 49.4 70 0.0015 20.7 5.6 44 10-53 119-164 (432)
426 PF10345 Cohesin_load: Cohesin 49.4 82 0.0018 21.4 8.6 51 3-53 38-93 (608)
427 COG5600 Transcription-associat 49.0 27 0.0006 22.6 2.9 33 20-52 220-252 (413)
428 PF13226 DUF4034: Domain of un 48.0 65 0.0014 19.9 5.3 37 2-38 115-151 (277)
429 KOG0890 Protein kinase of the 47.5 59 0.0013 26.2 4.7 26 29-54 1458-1483(2382)
430 COG5187 RPN7 26S proteasome re 47.0 74 0.0016 20.3 5.4 31 20-50 115-145 (412)
431 COG2764 PhnB Uncharacterized p 45.9 24 0.00052 19.3 2.1 15 34-48 10-24 (136)
432 KOG3807 Predicted membrane pro 45.8 83 0.0018 20.5 5.8 31 21-51 276-306 (556)
433 COG1747 Uncharacterized N-term 44.7 54 0.0012 22.5 3.8 39 28-66 213-251 (711)
434 cd09247 BRO1_Alix_like_2 Prote 43.6 59 0.0013 20.5 3.8 30 20-49 253-282 (346)
435 PF08969 USP8_dimer: USP8 dime 43.5 49 0.0011 17.2 4.3 30 20-49 38-67 (115)
436 COG1447 CelC Phosphotransferas 42.7 52 0.0011 17.3 4.3 34 15-48 14-47 (105)
437 KOG3677 RNA polymerase I-assoc 42.3 22 0.00047 23.5 1.8 27 22-48 274-300 (525)
438 KOG0985 Vesicle coat protein c 41.3 1.1E+02 0.0025 23.2 5.1 29 18-46 1102-1130(1666)
439 PF02255 PTS_IIA: PTS system, 41.1 52 0.0011 16.8 3.7 30 19-48 13-42 (96)
440 TIGR00823 EIIA-LAC phosphotran 41.1 53 0.0011 16.9 3.9 31 18-48 15-45 (99)
441 PRK11619 lytic murein transgly 40.8 1.2E+02 0.0027 21.0 5.4 32 17-48 343-374 (644)
442 cd00215 PTS_IIA_lac PTS_IIA, P 40.8 53 0.0011 16.8 3.9 31 18-48 13-43 (97)
443 PF12455 Dynactin: Dynein asso 40.5 86 0.0019 19.2 5.3 36 16-51 143-178 (274)
444 cd08977 SusD starch binding ou 40.1 86 0.0019 19.4 4.2 32 19-50 285-316 (359)
445 cd09034 BRO1_Alix_like Protein 39.5 76 0.0016 19.7 3.8 29 20-48 251-279 (345)
446 PF05131 Pep3_Vps18: Pep3/Vps1 39.4 21 0.00045 19.7 1.2 24 18-45 105-128 (147)
447 PRK09591 celC cellobiose phosp 39.2 59 0.0013 16.9 3.8 31 18-48 18-48 (104)
448 cd09245 BRO1_UmRIM23-like Prot 38.6 91 0.002 20.4 4.1 30 20-49 296-325 (413)
449 PF09797 NatB_MDM20: N-acetylt 38.3 94 0.002 19.5 4.1 33 36-68 199-231 (365)
450 PRK10148 hypothetical protein; 38.2 37 0.00081 18.5 2.1 16 33-48 10-25 (147)
451 COG2909 MalT ATP-dependent tra 38.1 1.6E+02 0.0035 21.6 7.6 50 1-50 473-527 (894)
452 PF04652 DUF605: Vta1 like; I 38.1 58 0.0013 20.5 3.2 29 21-49 350-378 (380)
453 KOG2047 mRNA splicing factor [ 38.0 1.5E+02 0.0032 21.2 5.7 48 4-51 86-133 (835)
454 PF12739 TRAPPC-Trs85: ER-Golg 38.0 82 0.0018 20.4 3.9 31 21-51 209-239 (414)
455 smart00777 Mad3_BUB1_I Mad3/BU 37.9 68 0.0015 17.2 4.4 25 20-44 99-123 (125)
456 KOG4459 Membrane-associated pr 37.7 72 0.0016 21.3 3.5 43 22-64 135-177 (471)
457 KOG0889 Histone acetyltransfer 37.5 1.1E+02 0.0024 26.0 4.8 51 20-70 2812-2862(3550)
458 cd09242 BRO1_ScBro1_like Prote 37.3 89 0.0019 19.7 3.9 28 21-48 245-272 (348)
459 TIGR02757 conserved hypothetic 36.5 19 0.00042 21.5 0.9 34 21-54 182-215 (229)
460 KOG1258 mRNA processing protei 36.4 1.5E+02 0.0032 20.6 6.7 50 5-54 64-113 (577)
461 cd06588 PhnB_like Escherichia 36.3 42 0.00092 17.4 2.1 15 34-48 9-23 (128)
462 COG5536 BET4 Protein prenyltra 36.3 1.1E+02 0.0024 19.3 5.2 50 5-54 93-144 (328)
463 cd09243 BRO1_Brox_like Protein 36.2 95 0.0021 19.8 3.9 29 20-48 248-276 (353)
464 COG3898 Uncharacterized membra 35.2 1.4E+02 0.003 20.0 7.0 29 31-59 165-193 (531)
465 KOG1166 Mitotic checkpoint ser 35.0 1.9E+02 0.0041 21.5 7.9 53 2-54 94-148 (974)
466 KOG1118 Lysophosphatidic acid 34.7 1.2E+02 0.0027 19.3 4.1 47 5-51 91-137 (366)
467 KOG0890 Protein kinase of the 34.5 1.2E+02 0.0025 24.8 4.5 54 1-54 1464-1517(2382)
468 TIGR01987 HI0074 nucleotidyltr 34.5 78 0.0017 16.9 3.4 17 2-18 5-21 (123)
469 KOG4521 Nuclear pore complex, 34.4 30 0.00066 25.9 1.7 34 19-52 919-952 (1480)
470 PRK10454 PTS system N,N'-diace 34.2 78 0.0017 16.8 3.9 31 18-48 29-59 (115)
471 PF06983 3-dmu-9_3-mt: 3-demet 33.8 42 0.00091 17.5 1.9 16 33-48 10-25 (116)
472 PRK15356 type III secretion sy 33.6 66 0.0014 15.8 5.6 42 3-44 11-52 (75)
473 PF06957 COPI_C: Coatomer (COP 33.3 1.5E+02 0.0032 19.7 4.6 29 29-57 309-337 (422)
474 COG4016 Uncharacterized protei 33.0 80 0.0017 17.5 2.8 43 6-48 54-96 (165)
475 TIGR02498 type_III_ssaH type I 32.7 71 0.0015 15.9 4.9 41 4-44 24-64 (79)
476 cd06455 M3A_TOP Peptidase M3 T 32.0 1.5E+02 0.0033 19.5 4.8 25 30-54 442-466 (472)
477 PRK13807 maltose phosphorylase 31.8 84 0.0018 22.3 3.4 29 26-54 632-660 (756)
478 PF11349 DUF3151: Protein of u 31.5 94 0.002 16.9 3.4 34 19-52 91-124 (129)
479 PF06287 DUF1039: Protein of u 31.1 69 0.0015 15.3 5.2 41 4-44 11-51 (66)
480 PF06855 DUF1250: Protein of u 30.4 25 0.00055 15.2 0.6 29 21-49 16-44 (46)
481 PF04505 Dispanin: Interferon- 29.9 79 0.0017 15.5 2.5 24 27-50 44-67 (82)
482 cd09240 BRO1_Alix Protein-inte 29.6 1.4E+02 0.003 18.9 3.8 28 21-48 256-283 (346)
483 COG5107 RNA14 Pre-mRNA 3'-end 29.5 1.9E+02 0.0041 19.8 6.9 47 3-49 449-495 (660)
484 cd09246 BRO1_Alix_like_1 Prote 28.7 1.6E+02 0.0034 18.7 4.0 28 21-48 248-275 (353)
485 PF03097 BRO1: BRO1-like domai 28.6 1.6E+02 0.0034 18.6 4.4 28 21-48 240-267 (377)
486 PF10078 DUF2316: Uncharacteri 28.1 93 0.002 15.8 3.7 34 40-73 37-74 (89)
487 KOG2062 26S proteasome regulat 28.0 2.4E+02 0.0052 20.6 5.7 34 21-54 60-96 (929)
488 COG5499 Predicted transcriptio 26.7 1.1E+02 0.0024 16.3 3.0 17 3-19 15-31 (120)
489 cd09241 BRO1_ScRim20-like Prot 26.7 1.6E+02 0.0036 18.6 3.8 29 20-48 237-265 (355)
490 KOG3616 Selective LIM binding 26.2 1.1E+02 0.0024 22.4 3.2 38 17-54 992-1029(1636)
491 KOG0128 RNA-binding protein SA 26.0 2.7E+02 0.0059 20.4 7.2 61 8-68 101-161 (881)
492 PF09674 DUF2400: Protein of u 25.6 38 0.00082 20.3 0.9 35 21-55 185-219 (232)
493 KOG3960 Myogenic helix-loop-he 25.4 1.6E+02 0.0034 18.2 3.4 40 31-70 128-178 (284)
494 COG5116 RPN2 26S proteasome re 25.1 2.5E+02 0.0053 20.0 4.5 25 22-46 61-85 (926)
495 PF14858 DUF4486: Domain of un 24.9 2E+02 0.0043 19.8 4.0 29 20-48 197-225 (542)
496 cd09239 BRO1_HD-PTP_like Prote 24.8 1.5E+02 0.0033 18.9 3.4 27 22-48 254-280 (361)
497 KOG3616 Selective LIM binding 24.0 1.2E+02 0.0026 22.2 3.0 25 21-45 662-686 (1636)
498 PF05470 eIF-3c_N: Eukaryotic 23.7 2.2E+02 0.0048 19.8 4.2 29 21-49 501-529 (595)
499 PRK09635 sigI RNA polymerase s 22.9 1.9E+02 0.0042 17.7 3.7 24 24-47 17-40 (290)
500 PF03632 Glyco_hydro_65m: Glyc 22.7 39 0.00084 21.7 0.6 37 17-53 299-335 (370)
No 1
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.56 E-value=2.2e-14 Score=68.03 Aligned_cols=54 Identities=31% Similarity=0.465 Sum_probs=50.3
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH
Q 038754 1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQ 54 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 54 (79)
++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++++|++|
T Consensus 12 ~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 12 DYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 478999999999999999999999999999999999999999999999999986
No 2
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.53 E-value=3.1e-14 Score=68.16 Aligned_cols=51 Identities=33% Similarity=0.518 Sum_probs=48.6
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHccCC
Q 038754 1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQD-NFSAAITYYHKALWLKP 51 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~~~p 51 (79)
++++|+.+|+++++.+|+++.+++++|.++..+| ++.+|+..++++++++|
T Consensus 18 ~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 18 DYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4789999999999999999999999999999999 79999999999999998
No 3
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.53 E-value=1.7e-13 Score=74.19 Aligned_cols=68 Identities=21% Similarity=0.240 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhh
Q 038754 2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGR 69 (79)
Q Consensus 2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 69 (79)
+++|+..|++++.++|.++.+|+++|.++...|++++|+.+|++++.++|+++.++..++.++...|+
T Consensus 40 ~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~ 107 (144)
T PRK15359 40 YSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGE 107 (144)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCC
Confidence 55666666666666666666666666666666666666666666666666666666666666655544
No 4
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.50 E-value=5.7e-13 Score=72.19 Aligned_cols=67 Identities=18% Similarity=0.110 Sum_probs=62.5
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHh
Q 038754 1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDE 67 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 67 (79)
++++|+..|+++++++|+++.+++++|.++..+|++++|+..|++++.+.|+++..+...+.+....
T Consensus 73 ~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 73 EYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred hHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999999999999999999999998888887776654
No 5
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=99.48 E-value=3.3e-13 Score=64.34 Aligned_cols=62 Identities=26% Similarity=0.256 Sum_probs=56.5
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHH
Q 038754 1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSL 62 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 62 (79)
++++|+..|++++..+|+++.+++.+|.+|.++|++++|...+++++..+|+++.++..++.
T Consensus 6 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 6 DYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 47899999999999999999999999999999999999999999999999998877766554
No 6
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.46 E-value=1.1e-12 Score=71.71 Aligned_cols=71 Identities=14% Similarity=0.059 Sum_probs=66.3
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhhcC
Q 038754 1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGRHG 71 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 71 (79)
++++|...|+-+...+|.++..|+++|.|+..+|++.+|+.+|.+++.++|++|.+..+.+.++...|+..
T Consensus 50 ~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~ 120 (157)
T PRK15363 50 EFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVC 120 (157)
T ss_pred CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHH
Confidence 57899999999999999999999999999999999999999999999999999999999998888776643
No 7
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=99.45 E-value=1.5e-12 Score=62.78 Aligned_cols=60 Identities=27% Similarity=0.284 Sum_probs=55.7
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHH
Q 038754 1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEML 60 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 60 (79)
++++|+.++++++.++|+++..|+.+|.++..+|++.+|+..++++++..|+++.+....
T Consensus 10 ~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 10 DYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred CHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 588999999999999999999999999999999999999999999999999998665443
No 8
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.36 E-value=7.3e-12 Score=74.05 Aligned_cols=70 Identities=27% Similarity=0.361 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhhcC
Q 038754 2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGRHG 71 (79)
Q Consensus 2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 71 (79)
++.|+..++.++.++|++..+|..+|.+|.-+|++.+|+..|+++|.++|++..++.+|..+-....+..
T Consensus 131 ~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 131 YEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred hHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 4567777777777777777777777777777777777777777777777777777777766665554443
No 9
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.35 E-value=2.1e-11 Score=74.33 Aligned_cols=66 Identities=17% Similarity=0.157 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHh
Q 038754 2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDE 67 (79)
Q Consensus 2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 67 (79)
+++|+..+++++.++|+++.+++.+|.++..+|++++|+..|++++.++|+++.+..++..+....
T Consensus 52 ~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 52 FTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 455666666666666666666666666666666666666666666666666665555555554443
No 10
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.34 E-value=7.4e-12 Score=74.02 Aligned_cols=69 Identities=25% Similarity=0.312 Sum_probs=65.7
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhh
Q 038754 1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGR 69 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 69 (79)
+|.+|+..|.++|+++|.++-.|.+.+.+|.++|.++.|++.++.++.+||....++..++.++...|+
T Consensus 96 ~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 96 DYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred hHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCc
Confidence 589999999999999999999999999999999999999999999999999999999999999887754
No 11
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.33 E-value=3e-11 Score=71.99 Aligned_cols=67 Identities=24% Similarity=0.226 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhh
Q 038754 2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEG 68 (79)
Q Consensus 2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 68 (79)
+++|+..|+++++++|+++.+|+++|.++...|++++|+..|+++++++|++..++.+++.++...|
T Consensus 80 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g 146 (296)
T PRK11189 80 RALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGG 146 (296)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 5677778888888888888888888888888888888888888888888888777777776665443
No 12
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.30 E-value=5.9e-11 Score=63.03 Aligned_cols=69 Identities=23% Similarity=0.242 Sum_probs=53.8
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhh
Q 038754 1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGR 69 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 69 (79)
++++|+..+++++..+|.++.++..+|.++..+|++++|+.+|++++.++|+++..+..++.++...++
T Consensus 32 ~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~ 100 (135)
T TIGR02552 32 RYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGE 100 (135)
T ss_pred cHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCC
Confidence 367788888888888888888888888888888888888888888888888887777777766665544
No 13
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.27 E-value=9.9e-11 Score=71.42 Aligned_cols=69 Identities=22% Similarity=0.154 Sum_probs=65.1
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhh
Q 038754 1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGR 69 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 69 (79)
+|++|+.+|+++++++|+++.+++++|.+|..+|++++|+..+++++.++|+++.++..++.++...|+
T Consensus 17 ~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 17 DFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 588999999999999999999999999999999999999999999999999999999888888877665
No 14
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.27 E-value=1.4e-10 Score=65.85 Aligned_cols=67 Identities=16% Similarity=0.247 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHH-HHhh
Q 038754 2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLAL-VDEG 68 (79)
Q Consensus 2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~-~~~~ 68 (79)
.++++..++++++.+|+++..|..+|.+|...|++++|+..|+++++++|+++..+..++.++ ...|
T Consensus 55 ~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g 122 (198)
T PRK10370 55 PEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAG 122 (198)
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC
Confidence 467788899999999999999999999999999999999999999999999998888888865 4434
No 15
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.23 E-value=2.1e-11 Score=77.77 Aligned_cols=70 Identities=19% Similarity=0.276 Sum_probs=62.6
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhhc
Q 038754 1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGRH 70 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 70 (79)
++++|..+|+.++..+|++..+||.+|.+|.++++++.|.-.|++|+.++|.+......++..+...++.
T Consensus 470 e~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~ 539 (638)
T KOG1126|consen 470 EFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRK 539 (638)
T ss_pred HHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhh
Confidence 3789999999999999999999999999999999999999999999999999987777777777665544
No 16
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.20 E-value=4.4e-11 Score=76.93 Aligned_cols=68 Identities=26% Similarity=0.399 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhh
Q 038754 2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGR 69 (79)
Q Consensus 2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 69 (79)
+++|+.+|.+++++.|..++++.++|..|..+|+.+.|+.+|.+|+.++|....+..+++.+.++.|.
T Consensus 404 l~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGn 471 (966)
T KOG4626|consen 404 LDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGN 471 (966)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCC
Confidence 45666666666666666666666666666666666666666666666666666666666666665544
No 17
>PRK12370 invasion protein regulator; Provisional
Probab=99.19 E-value=2.6e-10 Score=72.82 Aligned_cols=65 Identities=12% Similarity=0.046 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHh
Q 038754 3 HEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDE 67 (79)
Q Consensus 3 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 67 (79)
++|+..++++++++|+++.++..+|.++...|++++|+..|+++++++|+++.++..++.++...
T Consensus 321 ~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~ 385 (553)
T PRK12370 321 IKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMA 385 (553)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 45555555555555555555555555555555555555555555555555555555454444443
No 18
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.19 E-value=4.8e-10 Score=59.50 Aligned_cols=63 Identities=21% Similarity=0.129 Sum_probs=56.4
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHH
Q 038754 1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLA 63 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 63 (79)
++++|+.+++++++.+|+++..++.+|.++...|++++|+..|+++++++|++.........+
T Consensus 66 ~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 128 (135)
T TIGR02552 66 EYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKERA 128 (135)
T ss_pred HHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 478899999999999999999999999999999999999999999999999998655444433
No 19
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.17 E-value=5.1e-10 Score=72.07 Aligned_cols=66 Identities=24% Similarity=0.268 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHh
Q 038754 2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDE 67 (79)
Q Consensus 2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 67 (79)
+++|+..|+++++.+|+++.+++.+|.++...|++++|+.+|++++.++|++..++..++.++...
T Consensus 381 ~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~ 446 (615)
T TIGR00990 381 PDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKE 446 (615)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHC
Confidence 556666666666666666666666666666666666666666666666666666655555555443
No 20
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=2.3e-10 Score=71.35 Aligned_cols=65 Identities=28% Similarity=0.265 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH
Q 038754 2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVD 66 (79)
Q Consensus 2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 66 (79)
+++|+.+|+++++++|+...+|..+|.=|..+.+...|+..|++|++++|.|..+|-.++.++.-
T Consensus 346 HEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYei 410 (559)
T KOG1155|consen 346 HEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEI 410 (559)
T ss_pred HHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHH
Confidence 56777888888888888888888888888888888888888888888888777777777777654
No 21
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=99.16 E-value=1.6e-10 Score=50.96 Aligned_cols=43 Identities=26% Similarity=0.260 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHH
Q 038754 20 LSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSL 62 (79)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 62 (79)
|.+++.+|.+|..+|++++|+..|+++++.+|+|+.++..++.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 4688999999999999999999999999999999999887764
No 22
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.15 E-value=8.4e-10 Score=62.66 Aligned_cols=66 Identities=23% Similarity=0.254 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHH-HHcCC--HHHHHHHHHHHHccCCCCHHHHHHHHHHHHHh
Q 038754 2 YHEAISCYERALTLLNRSLSTYAGLAYTY-HLQDN--FSAAITYYHKALWLKPDDQFCTEMLSLALVDE 67 (79)
Q Consensus 2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 67 (79)
+++|+..|+++++++|+++.++..+|.++ ...|+ +.+|...++++++++|+++.++..++......
T Consensus 89 ~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~ 157 (198)
T PRK10370 89 YDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQ 157 (198)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHc
Confidence 45566666666666666666666666553 44454 35566666666666666655555555444443
No 23
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.15 E-value=4.2e-10 Score=72.59 Aligned_cols=70 Identities=27% Similarity=0.347 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhhcC
Q 038754 2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGRHG 71 (79)
Q Consensus 2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 71 (79)
++-|+..|+++++++|+.+.++.++|.++...|+..+|..+|.++|.+.|.++.++.+++.++...+..+
T Consensus 302 ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e 371 (966)
T KOG4626|consen 302 LDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIE 371 (966)
T ss_pred HHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccch
Confidence 4557777777777777777777777777777777777777777777777777777777777776665544
No 24
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.15 E-value=1.3e-09 Score=52.98 Aligned_cols=69 Identities=35% Similarity=0.453 Sum_probs=61.5
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhh
Q 038754 1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGR 69 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 69 (79)
++++|+..++++++..|.++.+++.+|.++...+++++|+.++++++.+.|.+...+..++.++...++
T Consensus 15 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 15 DYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred cHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHh
Confidence 478899999999999999999999999999999999999999999999999998777777766665544
No 25
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.15 E-value=1.4e-10 Score=57.47 Aligned_cols=68 Identities=29% Similarity=0.391 Sum_probs=59.1
Q ss_pred CHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhh
Q 038754 1 IYHEAISCYERALTLLNR--SLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGR 69 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 69 (79)
++++|+..++++++.+|. +...++.+|.||+++|++++|+..+++ .+.+|.+......++.++...++
T Consensus 4 ~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~ 73 (84)
T PF12895_consen 4 NYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGK 73 (84)
T ss_dssp -HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-
T ss_pred cHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCC
Confidence 478999999999999995 567788899999999999999999999 88999888777778888877665
No 26
>PRK12370 invasion protein regulator; Provisional
Probab=99.13 E-value=9e-10 Score=70.40 Aligned_cols=57 Identities=14% Similarity=0.110 Sum_probs=53.7
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHH
Q 038754 1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCT 57 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 57 (79)
++++|+..|+++++++|+++.+++.+|.++..+|++++|+..++++++++|.++.+.
T Consensus 353 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~ 409 (553)
T PRK12370 353 EYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAG 409 (553)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhH
Confidence 478999999999999999999999999999999999999999999999999987544
No 27
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=99.12 E-value=1.8e-10 Score=47.99 Aligned_cols=34 Identities=32% Similarity=0.658 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q 038754 20 LSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD 53 (79)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 53 (79)
+.+|+++|.+|..+|++++|+.+|+++++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 4689999999999999999999999999999974
No 28
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=99.11 E-value=1.3e-10 Score=48.67 Aligned_cols=33 Identities=33% Similarity=0.611 Sum_probs=31.3
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 038754 8 CYERALTLLNRSLSTYAGLAYTYHLQDNFSAAI 40 (79)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 40 (79)
+|+++++++|+++.+|+++|.+|...|++++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 478999999999999999999999999999986
No 29
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.09 E-value=2e-09 Score=64.23 Aligned_cols=55 Identities=13% Similarity=0.137 Sum_probs=52.8
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHH
Q 038754 1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQF 55 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 55 (79)
++++|+..|+++++++|++..++.++|.++...|++++|+..|+++++++|+++.
T Consensus 113 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~ 167 (296)
T PRK11189 113 NFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPY 167 (296)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 5789999999999999999999999999999999999999999999999999973
No 30
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.09 E-value=1.7e-09 Score=72.96 Aligned_cols=68 Identities=19% Similarity=0.109 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhh
Q 038754 2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGR 69 (79)
Q Consensus 2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 69 (79)
+++|+.+|++++.++|+++.++.++|.++...|++++|+..|+++++++|+++.++.+++.++...|+
T Consensus 625 ~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd 692 (987)
T PRK09782 625 VPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDD 692 (987)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 56677777777777777777777777777777777777777777777777777666666666665544
No 31
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.09 E-value=1.9e-09 Score=69.50 Aligned_cols=69 Identities=12% Similarity=0.140 Sum_probs=62.8
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhh
Q 038754 1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGR 69 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 69 (79)
++++|+.+|+++++++|++..++.++|.++..+|++++|+..|++++++.|+++.++..++.++...|+
T Consensus 414 ~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~ 482 (615)
T TIGR00990 414 EFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNK 482 (615)
T ss_pred CHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccC
Confidence 578999999999999999999999999999999999999999999999999999888888888877654
No 32
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=99.09 E-value=5.2e-10 Score=46.40 Aligned_cols=34 Identities=32% Similarity=0.529 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q 038754 20 LSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD 53 (79)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 53 (79)
+.+|+.+|.++..+|++++|+.+|+++++++|+|
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 4689999999999999999999999999999986
No 33
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.09 E-value=3.4e-09 Score=58.48 Aligned_cols=68 Identities=19% Similarity=0.186 Sum_probs=59.9
Q ss_pred CHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhh
Q 038754 1 IYHEAISCYERALTLLNRS---LSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEG 68 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 68 (79)
++++|+..|++++.+.|++ +.++.++|.++...|++++|+..|++++.++|.+...+..++.++...+
T Consensus 50 ~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~ 120 (168)
T CHL00033 50 EYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRG 120 (168)
T ss_pred CHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhh
Confidence 4789999999999997763 4599999999999999999999999999999999988878877777544
No 34
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=1.5e-09 Score=68.87 Aligned_cols=66 Identities=48% Similarity=0.734 Sum_probs=63.1
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH
Q 038754 1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVD 66 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 66 (79)
++.+|+.++++++.+.|.++.++..+|.+|..+|+++.|+..|.++|.++|++.++...++.++..
T Consensus 470 ~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 470 KYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred hHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 378999999999999999999999999999999999999999999999999999999999988877
No 35
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.08 E-value=1.8e-09 Score=70.68 Aligned_cols=70 Identities=10% Similarity=-0.089 Sum_probs=58.3
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhhc
Q 038754 1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGRH 70 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 70 (79)
++++|+..+++++..+|+++.+++.+|.++.++|++++|+.+|++++..+|+++.++..++.++...|+.
T Consensus 135 ~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~ 204 (694)
T PRK15179 135 GIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGAL 204 (694)
T ss_pred cHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH
Confidence 4678888888888888888888888888888888888888888888888888888888888888877654
No 36
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=2.1e-09 Score=65.92 Aligned_cols=66 Identities=20% Similarity=0.199 Sum_probs=59.7
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH
Q 038754 1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVD 66 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 66 (79)
+|..|+..+.++++++|+++.++|..|.++..+|+++.|+..|+++++++|+|..+...+..+...
T Consensus 272 ~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 272 EYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred hHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999999999999999999999777666555443
No 37
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.08 E-value=9.1e-10 Score=52.45 Aligned_cols=50 Identities=28% Similarity=0.454 Sum_probs=47.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhh
Q 038754 19 SLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEG 68 (79)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 68 (79)
++..|..+|.++...|++++|+.+|+++++++|+++.++.+++.++...+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~ 51 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLG 51 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC
Confidence 57899999999999999999999999999999999999999999988876
No 38
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.06 E-value=3.8e-09 Score=58.57 Aligned_cols=69 Identities=26% Similarity=0.407 Sum_probs=61.4
Q ss_pred CHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhh
Q 038754 1 IYHEAISCYERALTLLNRS---LSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGR 69 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 69 (79)
++++|+.+|+++++..|+. +.++.++|.++...|++++|+.+|++++.++|++...+..++.++...++
T Consensus 50 ~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 121 (172)
T PRK02603 50 EYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGE 121 (172)
T ss_pred CHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC
Confidence 5789999999999988764 57999999999999999999999999999999999888888888776654
No 39
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.06 E-value=5.7e-09 Score=53.86 Aligned_cols=69 Identities=19% Similarity=0.207 Sum_probs=58.0
Q ss_pred CHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC---HHHHHHHHHHHHHhhh
Q 038754 1 IYHEAISCYERALTLLNRS---LSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD---QFCTEMLSLALVDEGR 69 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~ 69 (79)
++++|+..|.+++..+|++ +.+++.+|.++...|+++.|+..|++++..+|++ +.++..++.++...++
T Consensus 17 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 91 (119)
T TIGR02795 17 DYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGD 91 (119)
T ss_pred CHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCC
Confidence 4788999999999999876 5789999999999999999999999999999986 3556666666665443
No 40
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.06 E-value=3.2e-09 Score=58.22 Aligned_cols=64 Identities=22% Similarity=0.160 Sum_probs=53.9
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC---CCCHHHHHHHHHHH
Q 038754 1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLK---PDDQFCTEMLSLAL 64 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~ 64 (79)
+|++|+.+|.+++.++|++|.++++.|.|+...|+...|...|+.++..- |.+..........+
T Consensus 84 ~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~~~~l~~~A~~~L 150 (157)
T PRK15363 84 HWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEVSEHQILRQRAEKML 150 (157)
T ss_pred hHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccChhHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999886 44444443333333
No 41
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.05 E-value=6e-09 Score=58.49 Aligned_cols=68 Identities=21% Similarity=0.222 Sum_probs=58.2
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhh
Q 038754 1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEG 68 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 68 (79)
++++|+..++++++.+|.+..++..+|.++..+|++++|+..|++++.++|++..++..++.++...|
T Consensus 46 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g 113 (234)
T TIGR02521 46 DLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQG 113 (234)
T ss_pred CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc
Confidence 46889999999999999999999999999999999999999999999999998877766666655443
No 42
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.01 E-value=3.2e-09 Score=61.92 Aligned_cols=68 Identities=24% Similarity=0.315 Sum_probs=60.8
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhh
Q 038754 1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEG 68 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 68 (79)
++..|+..++++.++.|+++.+|+.+|.+|.+.|++++|...|.+++++.|+++.+..+++-.+.-.|
T Consensus 115 ~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~g 182 (257)
T COG5010 115 NFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRG 182 (257)
T ss_pred chHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcC
Confidence 47889999999999999999999999999999999999999999999999999988777765544333
No 43
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.00 E-value=6.7e-09 Score=67.66 Aligned_cols=69 Identities=7% Similarity=-0.043 Sum_probs=61.4
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhh
Q 038754 1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGR 69 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 69 (79)
++++|+..++++++.+|+++.++..+|.++...|++++|+..|++++.++|+++.++..++.++...|+
T Consensus 91 ~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~ 159 (656)
T PRK15174 91 QPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDK 159 (656)
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC
Confidence 478899999999999999999999999999999999999999999999999999888888777766554
No 44
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=3.5e-09 Score=66.22 Aligned_cols=69 Identities=30% Similarity=0.399 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhhc
Q 038754 2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGRH 70 (79)
Q Consensus 2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 70 (79)
...|+..|+++++++|.|..+|+.+|.+|--++.+-=|+-+|++|+.+.|.|+..|..+++++...++.
T Consensus 380 t~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~ 448 (559)
T KOG1155|consen 380 THAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRL 448 (559)
T ss_pred cHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccH
Confidence 356888888888888888888888888888888888888888888888888888888888888766543
No 45
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=5.5e-09 Score=65.87 Aligned_cols=66 Identities=21% Similarity=0.173 Sum_probs=58.3
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH
Q 038754 1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVD 66 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 66 (79)
+|+.|+..|.++++.+|+++.+|.|+|.||.++|.+..|+...+.+++++|++..++..-+.++..
T Consensus 373 dy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~ 438 (539)
T KOG0548|consen 373 DYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRA 438 (539)
T ss_pred CHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHH
Confidence 588999999999999999999999999999999999999999999999999998666555555443
No 46
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.99 E-value=5.7e-09 Score=58.28 Aligned_cols=66 Identities=24% Similarity=0.324 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHccCCCCHHHHHHHHHHHHHh
Q 038754 2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDN-----------FSAAITYYHKALWLKPDDQFCTEMLSLALVDE 67 (79)
Q Consensus 2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 67 (79)
+++|+.-|++++.++|+...+++++|.+|..++. |+.|..+|++|+..+|++...+..+.-+.+.+
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~kap 127 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAAKAP 127 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhH
Confidence 5789999999999999999999999999987765 78899999999999999998877776655443
No 47
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.98 E-value=9e-09 Score=69.56 Aligned_cols=68 Identities=26% Similarity=0.330 Sum_probs=63.5
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhh
Q 038754 1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGR 69 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 69 (79)
++++|+..++++++++|+ +.++.++|.++.++|++++|+.+|++++.++|+++.++..++.++...|+
T Consensus 591 r~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~ 658 (987)
T PRK09782 591 QPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGD 658 (987)
T ss_pred CHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 578999999999999996 99999999999999999999999999999999999999999988877655
No 48
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.97 E-value=8.2e-09 Score=59.63 Aligned_cols=64 Identities=23% Similarity=0.092 Sum_probs=54.8
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHH
Q 038754 1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLAL 64 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 64 (79)
++..|..-++++++.+|++..+|..++.+|.+.|+.+.|.+.|++|++++|++..+.++++.-+
T Consensus 50 d~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FL 113 (250)
T COG3063 50 DYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFL 113 (250)
T ss_pred CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHH
Confidence 4567888899999999999999999999999999999999999999999998876666555443
No 49
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.96 E-value=1.5e-08 Score=59.82 Aligned_cols=68 Identities=13% Similarity=0.086 Sum_probs=57.6
Q ss_pred CHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH---HHHHHHHHHHHHhh
Q 038754 1 IYHEAISCYERALTLLNRS---LSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQ---FCTEMLSLALVDEG 68 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~~ 68 (79)
+|++|+..|+..++..|++ +.+++.+|.+|+..|++++|+..|+++++..|+++ .++..++.++...+
T Consensus 158 ~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g 231 (263)
T PRK10803 158 RQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKG 231 (263)
T ss_pred CHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcC
Confidence 5789999999999999998 58999999999999999999999999999999875 44444555555443
No 50
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.95 E-value=5e-09 Score=65.34 Aligned_cols=49 Identities=20% Similarity=0.142 Sum_probs=45.2
Q ss_pred CHHHHHHHHHHHHhhCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 038754 1 IYHEAISCYERALTLLNRSLST---YAGLAYTYHLQDNFSAAITYYHKALWL 49 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~A~~~~~~al~~ 49 (79)
+|++|+.+|+++++++|++..+ |+++|.+|..+|++++|+.++++++.+
T Consensus 90 ryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 90 RVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5889999999999999999854 999999999999999999999999997
No 51
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.95 E-value=1.6e-09 Score=68.68 Aligned_cols=67 Identities=22% Similarity=0.318 Sum_probs=57.3
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHh
Q 038754 1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDE 67 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 67 (79)
+|++|+.||+.++..+|.+...|+.+|-.+.-..+..+|+..|++|+++.|+...++.+++-.....
T Consensus 445 efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNl 511 (579)
T KOG1125|consen 445 EFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNL 511 (579)
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhh
Confidence 4789999999999999999999999999999999999999999999999999987666665554443
No 52
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.94 E-value=1.6e-08 Score=65.94 Aligned_cols=66 Identities=20% Similarity=0.210 Sum_probs=48.2
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhh
Q 038754 4 EAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGR 69 (79)
Q Consensus 4 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 69 (79)
+|+..|+++++++|+++.++..+|.++..+|++++|+..+++++.++|+++.++..++.++...|+
T Consensus 268 ~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~ 333 (656)
T PRK15174 268 QAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQ 333 (656)
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 367777777777777777777777777777777777777777777777777766666666655443
No 53
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.92 E-value=2e-08 Score=62.87 Aligned_cols=70 Identities=24% Similarity=0.209 Sum_probs=64.1
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhhc
Q 038754 1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGRH 70 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 70 (79)
+.++|.+.+++++.++|+.+-.+.++|.+|.+.|++.+|+..++..+..+|+++..|..++.++...|..
T Consensus 355 k~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~ 424 (484)
T COG4783 355 KAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNR 424 (484)
T ss_pred ChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCch
Confidence 4578999999999999999999999999999999999999999999999999999999999999887764
No 54
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.91 E-value=1.8e-08 Score=66.03 Aligned_cols=71 Identities=7% Similarity=-0.055 Sum_probs=67.1
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhhcC
Q 038754 1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGRHG 71 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 71 (79)
++++|..+++.++++.|++..++.+++.++.+.+++++|+.++++++..+|+++.+...++.++...|+.+
T Consensus 101 ~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~ 171 (694)
T PRK15179 101 RSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSE 171 (694)
T ss_pred CcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchH
Confidence 47899999999999999999999999999999999999999999999999999999999999998887654
No 55
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.91 E-value=1.2e-09 Score=70.06 Aligned_cols=67 Identities=24% Similarity=0.296 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhh
Q 038754 2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEG 68 (79)
Q Consensus 2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 68 (79)
++.|+.+|.+++.++|++..+|..+|.=+..+.+++.|+.+|++|+.++|+|..+|..++-++..++
T Consensus 437 h~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqe 503 (638)
T KOG1126|consen 437 HDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQE 503 (638)
T ss_pred HHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccc
Confidence 5566666666666666666666666666666666666666666666666666666666665555443
No 56
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.90 E-value=8.9e-09 Score=64.84 Aligned_cols=68 Identities=28% Similarity=0.258 Sum_probs=60.6
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhh
Q 038754 1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEG 68 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 68 (79)
+|++|+.+|..++++.|+.|-.|.|++-||...|++++.++...++|+++|+...+....+.+....|
T Consensus 130 kY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg 197 (606)
T KOG0547|consen 130 KYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLG 197 (606)
T ss_pred cHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhc
Confidence 48999999999999999999999999999999999999999999999999999866666555555444
No 57
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.89 E-value=1.3e-08 Score=63.48 Aligned_cols=56 Identities=11% Similarity=0.051 Sum_probs=50.5
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHH---HHHHHHHHHHHhhhc
Q 038754 15 LLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQF---CTEMLSLALVDEGRH 70 (79)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~l~~~~~~~~~~ 70 (79)
.+|+++.+|+++|.+|+.+|++++|+.+|+++++++|++.. ++.+++.++...|+.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~ 128 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEG 128 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCH
Confidence 56889999999999999999999999999999999999985 488888888877653
No 58
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=4.8e-08 Score=58.08 Aligned_cols=70 Identities=21% Similarity=0.133 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhhcCC
Q 038754 3 HEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGRHGI 72 (79)
Q Consensus 3 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 72 (79)
+..+.-++.-+..+|+|..-|..+|.+|..+|++..|...|.+++++.|+++..+..++.++-..+...+
T Consensus 139 ~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ 208 (287)
T COG4235 139 EALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQM 208 (287)
T ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcc
Confidence 4556678888999999999999999999999999999999999999999999999999988877665444
No 59
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.86 E-value=4.1e-08 Score=67.23 Aligned_cols=65 Identities=22% Similarity=0.252 Sum_probs=59.4
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHH
Q 038754 1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALV 65 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 65 (79)
++++|+..|+++++++|+++.+++.+|.++...|++++|+.+|+++++++|++..++..+..++.
T Consensus 366 ~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~ 430 (1157)
T PRK11447 366 NLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR 430 (1157)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 46889999999999999999999999999999999999999999999999999987776666543
No 60
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.85 E-value=2.5e-08 Score=58.86 Aligned_cols=69 Identities=32% Similarity=0.341 Sum_probs=53.2
Q ss_pred CHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhh
Q 038754 1 IYHEAISCYERALTLL--NRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGR 69 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 69 (79)
+++++...+.++.... +.++..|..+|.++.+.|++++|+.+|+++++++|+++.+...+...+...|+
T Consensus 125 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~ 195 (280)
T PF13429_consen 125 DYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGD 195 (280)
T ss_dssp -HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCC
Confidence 3567788888876655 67899999999999999999999999999999999999888777777665443
No 61
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.83 E-value=1.1e-07 Score=53.40 Aligned_cols=62 Identities=16% Similarity=0.101 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHH
Q 038754 2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLA 63 (79)
Q Consensus 2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 63 (79)
+++|...+.++++.+|.++.++..+|.++...|++++|+..+++++.+.|.++..+..+..+
T Consensus 151 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 212 (234)
T TIGR02521 151 FDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRI 212 (234)
T ss_pred HHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 45556666666666666666666666666666666666666666665555554443333333
No 62
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.83 E-value=8.5e-09 Score=60.82 Aligned_cols=71 Identities=28% Similarity=0.346 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhhcCCC
Q 038754 3 HEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGRHGID 73 (79)
Q Consensus 3 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~ 73 (79)
+++...+....+..|+++..+..+|.++..+|++++|+.+|+++++.+|+|+.+...+++++...|+...-
T Consensus 197 ~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A 267 (280)
T PF13429_consen 197 DEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEA 267 (280)
T ss_dssp HHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT--------
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccccccccccccccccccccc
Confidence 34445555555555666777888888889999999999999999999999999999999999988876543
No 63
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.83 E-value=5.3e-08 Score=55.98 Aligned_cols=65 Identities=23% Similarity=0.259 Sum_probs=55.9
Q ss_pred CHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHH---HHHHHHHHHH
Q 038754 1 IYHEAISCYERALTLLNRSL---STYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQF---CTEMLSLALV 65 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~l~~~~~ 65 (79)
++++|+..++++++.+|+++ .+++.+|.++...|++++|+..|+++++.+|+++. ++..++.++.
T Consensus 48 ~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~ 118 (235)
T TIGR03302 48 DYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNY 118 (235)
T ss_pred CHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHH
Confidence 47899999999999999876 68899999999999999999999999999998874 4444555443
No 64
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.81 E-value=6.9e-08 Score=49.76 Aligned_cols=58 Identities=10% Similarity=0.083 Sum_probs=52.5
Q ss_pred CHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHH
Q 038754 1 IYHEAISCYERALTLLNRS---LSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTE 58 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 58 (79)
++++|+.+|+.++...|++ +.+++.+|.++...|++.+|+..+++++...|+++.+..
T Consensus 54 ~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 54 KYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred cHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 4789999999999999885 678999999999999999999999999999999886543
No 65
>PRK15331 chaperone protein SicA; Provisional
Probab=98.81 E-value=3.6e-08 Score=54.44 Aligned_cols=66 Identities=18% Similarity=0.059 Sum_probs=43.3
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH
Q 038754 1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVD 66 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 66 (79)
++++|...|+-+...+|.++.-|+.+|.|+..+++|+.|+..|-.+..++++||......+.++..
T Consensus 52 k~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~ 117 (165)
T PRK15331 52 RLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLL 117 (165)
T ss_pred CHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHH
Confidence 456677777777777777777777777777777777777777777777766666444444444433
No 66
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.81 E-value=6.9e-08 Score=62.91 Aligned_cols=68 Identities=24% Similarity=0.155 Sum_probs=60.9
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhh
Q 038754 1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEG 68 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 68 (79)
++++|+..++++++.+|+++.+++.+|.+|..+|++++|+..+++++...|++......++.++...|
T Consensus 37 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~g 104 (899)
T TIGR02917 37 KYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQG 104 (899)
T ss_pred ChHhHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChhhhHHHHHHHHHHCC
Confidence 57899999999999999999999999999999999999999999999999988877666666665544
No 67
>PLN02789 farnesyltranstransferase
Probab=98.80 E-value=6.7e-08 Score=58.51 Aligned_cols=67 Identities=7% Similarity=0.005 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhh
Q 038754 2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQD-NFSAAITYYHKALWLKPDDQFCTEMLSLALVDEG 68 (79)
Q Consensus 2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 68 (79)
+++|+..+.++++++|++..+|...|.++..+| ++++++.+++++++.+|++..++...+.++...+
T Consensus 53 serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~ 120 (320)
T PLN02789 53 SPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLG 120 (320)
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcC
Confidence 567888888888888888888888888888887 5688888888888888888877777666665544
No 68
>PLN02789 farnesyltranstransferase
Probab=98.80 E-value=8.5e-08 Score=58.08 Aligned_cols=65 Identities=8% Similarity=0.159 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHh
Q 038754 3 HEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDE 67 (79)
Q Consensus 3 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 67 (79)
++++.++.++++.+|++..+|...|.++..+|++++|+.++.++++++|+|..++.....++...
T Consensus 125 ~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~ 189 (320)
T PLN02789 125 NKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRS 189 (320)
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhc
Confidence 56788889999999999999999999999999999999999999999999998888877776654
No 69
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=98.78 E-value=1.9e-08 Score=41.62 Aligned_cols=33 Identities=33% Similarity=0.649 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q 038754 21 STYAGLAYTYHLQDNFSAAITYYHKALWLKPDD 53 (79)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 53 (79)
.+|+.+|.+|..+|++++|+.+|+++++++|++
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 579999999999999999999999999999953
No 70
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.77 E-value=1.1e-07 Score=65.14 Aligned_cols=68 Identities=24% Similarity=0.151 Sum_probs=58.7
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhh
Q 038754 1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEG 68 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 68 (79)
++++|+.+|+++++.+|+++.++.++|.+|...|++++|+..|++++...|+++.++..++.++...|
T Consensus 618 ~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g 685 (1157)
T PRK11447 618 DYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALG 685 (1157)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCC
Confidence 47889999999999999999999999999999999999999999999999998877776666665443
No 71
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.77 E-value=4.6e-08 Score=63.75 Aligned_cols=71 Identities=25% Similarity=0.296 Sum_probs=66.7
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhhcC
Q 038754 1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGRHG 71 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 71 (79)
+|.++...++..++++|-....|+++|.|..+.+++..|..+|..++.++|++..+|+++..++...+++.
T Consensus 500 ~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ 570 (777)
T KOG1128|consen 500 DFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKK 570 (777)
T ss_pred hHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhH
Confidence 47899999999999999999999999999999999999999999999999999999999999988877653
No 72
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.77 E-value=3.9e-08 Score=62.05 Aligned_cols=63 Identities=21% Similarity=0.270 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHH
Q 038754 3 HEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALV 65 (79)
Q Consensus 3 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 65 (79)
.+....|.++.+++|.++++|+..|.+++-++++++|+..|++++.++|.+..++..+..+.=
T Consensus 377 ~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Y 439 (606)
T KOG0547|consen 377 EKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALY 439 (606)
T ss_pred HHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHH
Confidence 456678999999999999999999999999999999999999999999999866655554443
No 73
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.76 E-value=1.6e-07 Score=62.17 Aligned_cols=65 Identities=12% Similarity=-0.118 Sum_probs=55.6
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHH
Q 038754 1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALV 65 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 65 (79)
++++|+..+++++...|+++.++..+|.++...|++++|+..+++++.++|+++......+.+..
T Consensus 374 ~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al 438 (765)
T PRK10049 374 DLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTAL 438 (765)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Confidence 46889999999999999999999999999999999999999999999999999755544444433
No 74
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.76 E-value=1.7e-07 Score=61.15 Aligned_cols=69 Identities=20% Similarity=0.199 Sum_probs=53.1
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhh
Q 038754 1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGR 69 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 69 (79)
++++|+..++++++.+|+++.+++.+|.+|...|++++|+..|+++++.+|+++.++..++.++...++
T Consensus 751 ~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 819 (899)
T TIGR02917 751 NTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD 819 (899)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc
Confidence 356777778888888888888888888888888888888888888888888888777777666655443
No 75
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.75 E-value=2.4e-07 Score=51.36 Aligned_cols=54 Identities=28% Similarity=0.488 Sum_probs=49.7
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHccCCCCH
Q 038754 1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDN--------------FSAAITYYHKALWLKPDDQ 54 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~A~~~~~~al~~~p~~~ 54 (79)
++++|+.+++++++..|+++.++..+|.++...|+ +.+|+.++++++.++|++.
T Consensus 87 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~ 154 (172)
T PRK02603 87 EHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNY 154 (172)
T ss_pred CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhH
Confidence 47899999999999999999999999999999988 6889999999999999874
No 76
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.75 E-value=7.8e-08 Score=61.41 Aligned_cols=54 Identities=26% Similarity=0.312 Sum_probs=51.0
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHH
Q 038754 1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQF 55 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 55 (79)
++++|...+++++.++| ++.+|..+|.++...|++++|+..|++|+.++|.++.
T Consensus 435 ~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 435 KTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred CHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 57899999999999999 5899999999999999999999999999999999883
No 77
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.74 E-value=1.8e-07 Score=61.95 Aligned_cols=63 Identities=21% Similarity=0.177 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHH
Q 038754 2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALV 65 (79)
Q Consensus 2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 65 (79)
+++|+..++++++..|+++. +..+|.++...|++.+|+..|+++++++|+++.++..++.++.
T Consensus 99 ~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~ 161 (765)
T PRK10049 99 YDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALR 161 (765)
T ss_pred HHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 45566666666666666666 6666666666666666666666666666666655555555544
No 78
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.73 E-value=9.8e-08 Score=64.20 Aligned_cols=66 Identities=18% Similarity=0.107 Sum_probs=63.5
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHccCCCCHHHHHHHHHHHHH
Q 038754 1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDN-FSAAITYYHKALWLKPDDQFCTEMLSLALVD 66 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 66 (79)
+|+++++...++++.+|++..++..+|.++..++. .++|...|-.+.+++|++..+|..+...+..
T Consensus 17 ~YeealEqskkvLk~dpdNYnA~vFLGvAl~sl~q~le~A~ehYv~AaKldpdnlLAWkGL~nLye~ 83 (1238)
T KOG1127|consen 17 EYEEALEQSKKVLKEDPDNYNAQVFLGVALWSLGQDLEKAAEHYVLAAKLDPDNLLAWKGLGNLYER 83 (1238)
T ss_pred cHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhccCCHHHHHHHHHHHHhcChhhhHHHHHHHHHHHc
Confidence 58999999999999999999999999999999999 9999999999999999999999999998876
No 79
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.72 E-value=1.3e-07 Score=57.99 Aligned_cols=70 Identities=24% Similarity=0.235 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhhcC
Q 038754 2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGRHG 71 (79)
Q Consensus 2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 71 (79)
+.+|+..+.+++..+|++..++...+.+|.....|+.||..|++|+..+++|..+...+..+..-..+.+
T Consensus 323 ~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akrlkkqs~ 392 (504)
T KOG0624|consen 323 FGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAKRLKKQSG 392 (504)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHhc
Confidence 5789999999999999999999999999999999999999999999999999999999888776554443
No 80
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.71 E-value=2.6e-08 Score=48.44 Aligned_cols=50 Identities=32% Similarity=0.504 Sum_probs=42.3
Q ss_pred CHHHHHHHHHHHHhhC---C-C---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 038754 1 IYHEAISCYERALTLL---N-R---SLSTYAGLAYTYHLQDNFSAAITYYHKALWLK 50 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~---~-~---~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 50 (79)
++++|+.+|++++++. + + -..++.++|.++..+|++++|+.++++++++.
T Consensus 20 ~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 20 RYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp -HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 5789999999999762 2 2 26789999999999999999999999999863
No 81
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=98.70 E-value=4e-07 Score=41.61 Aligned_cols=47 Identities=17% Similarity=0.116 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHh
Q 038754 21 STYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDE 67 (79)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 67 (79)
++++.+|..++++|+|..|..+.+.+|+++|+|..+.......-...
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i 48 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKI 48 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999998876554444433
No 82
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.70 E-value=1.5e-07 Score=61.66 Aligned_cols=69 Identities=20% Similarity=0.098 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH--HHHHHHccCCCCHHHHHHHHHHHHHhhhc
Q 038754 2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAIT--YYHKALWLKPDDQFCTEMLSLALVDEGRH 70 (79)
Q Consensus 2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~--~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 70 (79)
+.+|...|..++.++|+++.....+|.++...|+..-|.. ....++++||.++.+|..++.++...|+.
T Consensus 700 ~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~ 770 (799)
T KOG4162|consen 700 LEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDS 770 (799)
T ss_pred hHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccch
Confidence 5688888999999999999999999999999998888888 88999999999999999999888887764
No 83
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.69 E-value=1.5e-07 Score=54.58 Aligned_cols=64 Identities=19% Similarity=0.104 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc--CCCCHHHHHHHHHHHH
Q 038754 2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWL--KPDDQFCTEMLSLALV 65 (79)
Q Consensus 2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~ 65 (79)
.+.|.+.|++++.++|++.++++|+|..+..+|++++|+.+|++|+.. .|..+..+.+++-+-.
T Consensus 85 ~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal 150 (250)
T COG3063 85 NDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCAL 150 (250)
T ss_pred hhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHh
Confidence 355677777777777777777777777777777777777777777764 2333444555544444
No 84
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.69 E-value=3.1e-07 Score=56.01 Aligned_cols=65 Identities=15% Similarity=0.036 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH-HHHHHHHHHHHH
Q 038754 2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQ-FCTEMLSLALVD 66 (79)
Q Consensus 2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~ 66 (79)
+++|+..|+++++.+|++..+++.+|.++...|++++|+..|++++..+|.+. .++..+..++..
T Consensus 196 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~ 261 (389)
T PRK11788 196 LDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQA 261 (389)
T ss_pred HHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHH
Confidence 56777777777777777777777777777777777778777777777777653 333444444443
No 85
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.68 E-value=1.6e-07 Score=45.41 Aligned_cols=52 Identities=35% Similarity=0.523 Sum_probs=48.8
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 038754 1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPD 52 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 52 (79)
++++|+.++++++...|.+..++..+|.++...|+++.|...+.+++..+|+
T Consensus 49 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 49 KYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred HHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence 3678999999999999999999999999999999999999999999998874
No 86
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.67 E-value=4.1e-07 Score=53.22 Aligned_cols=54 Identities=17% Similarity=0.173 Sum_probs=50.3
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHccCCCCH
Q 038754 1 IYHEAISCYERALTLLNRSLSTY---AGLAYTYHLQDNFSAAITYYHKALWLKPDDQ 54 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 54 (79)
+|++|+..|++++...|.++.+- +.+|.+|++++++.+|+..+++.++++|+++
T Consensus 47 ~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~ 103 (243)
T PRK10866 47 NWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP 103 (243)
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCC
Confidence 57899999999999999987654 8999999999999999999999999999997
No 87
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.65 E-value=1.5e-07 Score=44.26 Aligned_cols=47 Identities=28% Similarity=0.338 Sum_probs=42.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhhc
Q 038754 24 AGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGRH 70 (79)
Q Consensus 24 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 70 (79)
+.+|..++..|++++|+..|+++++.+|+++.++..++.++...|+.
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~ 47 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRY 47 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCH
Confidence 46899999999999999999999999999999999999998877653
No 88
>PRK15331 chaperone protein SicA; Provisional
Probab=98.64 E-value=3.8e-07 Score=50.44 Aligned_cols=65 Identities=15% Similarity=0.077 Sum_probs=55.8
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH
Q 038754 1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVD 66 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 66 (79)
+|++|+..|..+..++++||...+..|.||..+|+...|+.+|+.++. .|.+......-...+..
T Consensus 86 ~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~l~~~A~~~L~~ 150 (165)
T PRK15331 86 QFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDESLRAKALVYLEA 150 (165)
T ss_pred HHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh-CcchHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999999999999999 67777555544444443
No 89
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.62 E-value=3.6e-07 Score=59.14 Aligned_cols=68 Identities=21% Similarity=0.151 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhh
Q 038754 2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGR 69 (79)
Q Consensus 2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 69 (79)
-++|..+.+..++.++.+.-+|..+|.++....+|++|+.||+.|+.++|+|...+..++-....+++
T Consensus 57 ~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd 124 (700)
T KOG1156|consen 57 KEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRD 124 (700)
T ss_pred hHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Confidence 46888999999999999999999999999999999999999999999999999777777666655544
No 90
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.61 E-value=7.5e-07 Score=49.96 Aligned_cols=70 Identities=14% Similarity=0.037 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhhcC
Q 038754 2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDN----------FSAAITYYHKALWLKPDDQFCTEMLSLALVDEGRHG 71 (79)
Q Consensus 2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 71 (79)
|+.|.+.++..+..+|.+++.+++.|.++..+.+ +++|+.=|+.||.|+|+...+.-.++.++...+...
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 5788999999999999999999999999987755 456788899999999999999989999988877644
No 91
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.60 E-value=6.1e-07 Score=55.60 Aligned_cols=69 Identities=13% Similarity=0.051 Sum_probs=60.3
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhhc
Q 038754 1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGRH 70 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 70 (79)
++++++..+++.++.+|+++..+..+|.++...+++.+|...|++++++.|++..+ ..++.++...|+.
T Consensus 309 ~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~-~~La~~~~~~g~~ 377 (398)
T PRK10747 309 NPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDY-AWLADALDRLHKP 377 (398)
T ss_pred ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHH-HHHHHHHHHcCCH
Confidence 35788999999999999999999999999999999999999999999999998753 3677777766654
No 92
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.59 E-value=2.4e-06 Score=45.21 Aligned_cols=69 Identities=30% Similarity=0.289 Sum_probs=56.8
Q ss_pred CHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC---CHHHHHHHHHHHHHhhh
Q 038754 1 IYHEAISCYERALTLLNRS---LSTYAGLAYTYHLQDNFSAAITYYHKALWLKPD---DQFCTEMLSLALVDEGR 69 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~~~ 69 (79)
+.++|+..|++++....+. ..++..+|.++..+|++++|+..+++++.-.|+ +......+..++...|+
T Consensus 16 ~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr 90 (120)
T PF12688_consen 16 REEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGR 90 (120)
T ss_pred CHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCC
Confidence 4689999999999987655 578999999999999999999999999999888 55555556666665554
No 93
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.58 E-value=3.9e-07 Score=60.53 Aligned_cols=71 Identities=24% Similarity=0.281 Sum_probs=63.5
Q ss_pred CHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhhcC
Q 038754 1 IYHEAISCYERALTLLNR-SLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGRHG 71 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 71 (79)
++.+|+.++..++...+. +...|+.+|.||..+|.++.|+.+|++++.+.|++..++..+..++...|+.+
T Consensus 429 ~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~E 500 (895)
T KOG2076|consen 429 KYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHE 500 (895)
T ss_pred cHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHH
Confidence 478899999999888774 46899999999999999999999999999999999999999999888877643
No 94
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.58 E-value=5.4e-07 Score=57.58 Aligned_cols=67 Identities=22% Similarity=0.261 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhh
Q 038754 2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEG 68 (79)
Q Consensus 2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 68 (79)
+.+|.-+|+.+++.+|.+..+|..||.+....++-..||..++++++++|+|..++..|+-.+...|
T Consensus 301 L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg 367 (579)
T KOG1125|consen 301 LSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEG 367 (579)
T ss_pred chHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhh
Confidence 5678889999999999999999999999999999999999999999999999988777766555544
No 95
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.57 E-value=8.8e-07 Score=55.03 Aligned_cols=68 Identities=13% Similarity=0.046 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHhhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHH--HHHccCCCCHHHHHHHHHHHHHhhhc
Q 038754 2 YHEAISCYERALTLLNRSL--STYAGLAYTYHLQDNFSAAITYYH--KALWLKPDDQFCTEMLSLALVDEGRH 70 (79)
Q Consensus 2 ~~~A~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~A~~~~~--~al~~~p~~~~~~~~l~~~~~~~~~~ 70 (79)
...++..+++.++.+|+++ ..+..+|.++++.|++++|..+|+ .+++.+|++.... .++.++...|+.
T Consensus 315 ~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~-~La~ll~~~g~~ 386 (409)
T TIGR00540 315 NEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLA-MAADAFDQAGDK 386 (409)
T ss_pred hHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHH-HHHHHHHHcCCH
Confidence 4568888999999999999 889999999999999999999999 6888999887644 788888776653
No 96
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.57 E-value=1e-06 Score=53.27 Aligned_cols=54 Identities=19% Similarity=0.114 Sum_probs=49.3
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH
Q 038754 1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQ 54 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 54 (79)
++++|+..++++++++|+++.++..+|.++...|++++|+.++++++...|.++
T Consensus 129 ~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~ 182 (355)
T cd05804 129 QYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSS 182 (355)
T ss_pred CHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCc
Confidence 468899999999999999999999999999999999999999999999987543
No 97
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.57 E-value=5.8e-07 Score=51.61 Aligned_cols=58 Identities=21% Similarity=0.245 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHH
Q 038754 2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEM 59 (79)
Q Consensus 2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 59 (79)
++.|+..+.++++++|.+-.++-..+.+|.++..+++|+..|.+.+.++|....++..
T Consensus 150 ~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~ 207 (271)
T KOG4234|consen 150 WESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREA 207 (271)
T ss_pred HHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHH
Confidence 5678888888888888888888888888888888888888888888888877644433
No 98
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.54 E-value=1.2e-06 Score=55.19 Aligned_cols=70 Identities=20% Similarity=0.176 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhhcC
Q 038754 2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGRHG 71 (79)
Q Consensus 2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 71 (79)
+++|+..++..+...|+|+..+...+.++...++..+|.+.+++++.++|+.+..+.+++.++...|+..
T Consensus 322 ~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 322 YDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred cchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChH
Confidence 5789999999999999999999999999999999999999999999999999999999999998877654
No 99
>PRK11906 transcriptional regulator; Provisional
Probab=98.53 E-value=1.5e-06 Score=54.65 Aligned_cols=62 Identities=10% Similarity=-0.020 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHH
Q 038754 3 HEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLAL 64 (79)
Q Consensus 3 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 64 (79)
.+|.+..+++++++|.|+.+++.+|.+....++++.|+..|++|+.++|+.+.++...+...
T Consensus 321 ~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~ 382 (458)
T PRK11906 321 QKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVH 382 (458)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHH
Confidence 46777777888888888888888888877777888888888888888888776665555433
No 100
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.53 E-value=8.5e-07 Score=51.00 Aligned_cols=57 Identities=18% Similarity=0.216 Sum_probs=51.4
Q ss_pred CHHHHHHHHHHHHhhCCCCHH---HHHHHHHHHHHc--------CCHHHHHHHHHHHHccCCCCHHHH
Q 038754 1 IYHEAISCYERALTLLNRSLS---TYAGLAYTYHLQ--------DNFSAAITYYHKALWLKPDDQFCT 57 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~~~---~~~~~~~~~~~~--------~~~~~A~~~~~~al~~~p~~~~~~ 57 (79)
++++|+..++++++..|+++. +++.+|.++... |++++|+..|++++..+|++..+.
T Consensus 85 ~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 152 (235)
T TIGR03302 85 DYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAP 152 (235)
T ss_pred CHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHH
Confidence 578999999999999998876 799999999887 889999999999999999997554
No 101
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.53 E-value=1.6e-06 Score=57.79 Aligned_cols=68 Identities=19% Similarity=0.156 Sum_probs=60.8
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhh
Q 038754 1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEG 68 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 68 (79)
++++|...+.++++.+|.++.+|+.+|.+|-.+|+..++..++-.|--++|++...|..+++.....|
T Consensus 154 ~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~ 221 (895)
T KOG2076|consen 154 DLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLG 221 (895)
T ss_pred CHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcc
Confidence 47899999999999999999999999999999999999999998888999999888888877776655
No 102
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=5.7e-07 Score=52.58 Aligned_cols=65 Identities=25% Similarity=0.300 Sum_probs=58.8
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHH
Q 038754 1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALV 65 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 65 (79)
+|..|+.+|.+++.++|..+..|.+.+.|+++..+++.+.....++++++|+...+...++....
T Consensus 25 ~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l 89 (284)
T KOG4642|consen 25 RYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLL 89 (284)
T ss_pred hhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHH
Confidence 47889999999999999999999999999999999999999999999999998877776666554
No 103
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.50 E-value=2.1e-06 Score=52.40 Aligned_cols=67 Identities=27% Similarity=0.259 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHhhCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhh
Q 038754 2 YHEAISCYERALTLLNRSL-----STYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEG 68 (79)
Q Consensus 2 ~~~A~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 68 (79)
+++|+..++++++.+|.+. ..+..+|.++..+|++++|+..|+++++++|++..++..++.++...|
T Consensus 157 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 228 (389)
T PRK11788 157 WQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQG 228 (389)
T ss_pred HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCC
Confidence 4556666666665555432 234455666666666666666666666666666555555555544433
No 104
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.50 E-value=2.8e-06 Score=50.31 Aligned_cols=57 Identities=7% Similarity=0.064 Sum_probs=52.1
Q ss_pred CHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHH
Q 038754 1 IYHEAISCYERALTLLNR---SLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCT 57 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 57 (79)
++++|+..|+++++..|+ .+++++.+|.++..+|+++.|+..|+++++..|++..+.
T Consensus 195 ~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~ 254 (263)
T PRK10803 195 KKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAK 254 (263)
T ss_pred CHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHH
Confidence 578999999999998887 489999999999999999999999999999999988544
No 105
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.49 E-value=2.1e-07 Score=45.93 Aligned_cols=45 Identities=27% Similarity=0.201 Sum_probs=40.2
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 038754 1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKA 46 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 46 (79)
+|++|+.++++ .+.++.++..++.+|.|+.++|++++|+..++++
T Consensus 40 ~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 40 KYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 37889999999 8889999999999999999999999999999875
No 106
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.48 E-value=5.4e-06 Score=44.97 Aligned_cols=54 Identities=30% Similarity=0.365 Sum_probs=50.1
Q ss_pred CHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH
Q 038754 1 IYHEAISCYERALTLLNR---SLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQ 54 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 54 (79)
+|.+|+..|+.+....|. ...+-..+|.+|++.+++..|+..+++.++++|+|+
T Consensus 25 ~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp 81 (142)
T PF13512_consen 25 NYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHP 81 (142)
T ss_pred CHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC
Confidence 478999999999998886 468999999999999999999999999999999998
No 107
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=3.5e-06 Score=50.33 Aligned_cols=60 Identities=20% Similarity=0.226 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHH
Q 038754 3 HEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSL 62 (79)
Q Consensus 3 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 62 (79)
.++...++++++++|.+..+.+.+|..++.+|+|.+|+..++..++..|-+......++.
T Consensus 210 a~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~ 269 (287)
T COG4235 210 AKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIER 269 (287)
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 456677777777777777777777777777788888777777777776655433434433
No 108
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=98.48 E-value=4.1e-07 Score=37.08 Aligned_cols=33 Identities=24% Similarity=0.420 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q 038754 21 STYAGLAYTYHLQDNFSAAITYYHKALWLKPDD 53 (79)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 53 (79)
++++.+|.++.+.|++++|+..|++++...|++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 478999999999999999999999999999974
No 109
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=1.9e-06 Score=54.83 Aligned_cols=64 Identities=17% Similarity=0.154 Sum_probs=53.8
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHH
Q 038754 1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLAL 64 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 64 (79)
+|.+|+..-.+.++++|+=+..|+..|.++.-+|+|++|+..|.+.|+.+|+++....++..+.
T Consensus 51 ~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 51 SYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred hHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence 3667777777788888888888899999999999999999999999999999988888777766
No 110
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.45 E-value=4.5e-06 Score=52.00 Aligned_cols=68 Identities=19% Similarity=0.086 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhhc
Q 038754 3 HEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGRH 70 (79)
Q Consensus 3 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 70 (79)
.+|+..+.++++..|.+...+...+..+...++++.|+...++++.+.|++...|..++.++...++-
T Consensus 217 ~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~ 284 (395)
T PF09295_consen 217 VEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDF 284 (395)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCH
Confidence 57899999999999999999999999999999999999999999999999999999999998877653
No 111
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=98.45 E-value=5.8e-07 Score=37.80 Aligned_cols=28 Identities=36% Similarity=0.597 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 038754 22 TYAGLAYTYHLQDNFSAAITYYHKALWL 49 (79)
Q Consensus 22 ~~~~~~~~~~~~~~~~~A~~~~~~al~~ 49 (79)
+|.++|.+|..+|++++|+.+|++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5789999999999999999999996654
No 112
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=98.44 E-value=6.2e-07 Score=35.45 Aligned_cols=33 Identities=30% Similarity=0.563 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q 038754 21 STYAGLAYTYHLQDNFSAAITYYHKALWLKPDD 53 (79)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 53 (79)
.+++.+|.++...++++.|+.+|+++++++|++
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence 578899999999999999999999999999864
No 113
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.44 E-value=4.2e-06 Score=49.36 Aligned_cols=66 Identities=21% Similarity=0.264 Sum_probs=55.7
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhh
Q 038754 4 EAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGR 69 (79)
Q Consensus 4 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 69 (79)
+|+..+...++.-+.|.++|..++.+|...|+|..|.-||++++-+.|-++.....+++++=..|.
T Consensus 138 ~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg 203 (289)
T KOG3060|consen 138 EAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGG 203 (289)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhh
Confidence 566666666777788899999999999999999999999999999999999888888887766553
No 114
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.43 E-value=5.3e-06 Score=44.84 Aligned_cols=53 Identities=28% Similarity=0.278 Sum_probs=49.4
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q 038754 1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD 53 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 53 (79)
+.+.|++.|.+++.+.|..+.+|++.+.++..+|+.++|+..+++++++..+.
T Consensus 58 ~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~ 110 (175)
T KOG4555|consen 58 DLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ 110 (175)
T ss_pred chHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc
Confidence 46789999999999999999999999999999999999999999999996544
No 115
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.42 E-value=6.8e-06 Score=45.33 Aligned_cols=54 Identities=22% Similarity=0.231 Sum_probs=46.3
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-------HcCCHH-------HHHHHHHHHHccCCCCH
Q 038754 1 IYHEAISCYERALTLLNRSLSTYAGLAYTYH-------LQDNFS-------AAITYYHKALWLKPDDQ 54 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~-------~A~~~~~~al~~~p~~~ 54 (79)
++++|+.+++++++++|.....+.++|.++. ..|+++ +|+..|++++..+|.+.
T Consensus 87 ~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 87 EHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred CHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 4789999999999999999999999999999 777766 66777777888888665
No 116
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.42 E-value=6.8e-06 Score=46.82 Aligned_cols=54 Identities=30% Similarity=0.438 Sum_probs=46.4
Q ss_pred CHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH
Q 038754 1 IYHEAISCYERALTLLNRS---LSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQ 54 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 54 (79)
+|.+|+..|++++...|.+ +.+.+.+|.++++.|++..|+..|++.++..|+++
T Consensus 20 ~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~ 76 (203)
T PF13525_consen 20 DYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSP 76 (203)
T ss_dssp -HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-T
T ss_pred CHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc
Confidence 5789999999999998875 68999999999999999999999999999999987
No 117
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.42 E-value=7.3e-07 Score=54.76 Aligned_cols=68 Identities=21% Similarity=0.193 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhh
Q 038754 2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGR 69 (79)
Q Consensus 2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 69 (79)
+.+|+..|..+++.+|++..+++..|.+|..+|+...|+..+.+++++-|++..++...+.++...|+
T Consensus 54 ~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Ge 121 (504)
T KOG0624|consen 54 LSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGE 121 (504)
T ss_pred HHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhccc
Confidence 56889999999999999999999999999999999999999999999999998887777777666554
No 118
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.39 E-value=3.4e-06 Score=50.61 Aligned_cols=69 Identities=19% Similarity=0.214 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhhc
Q 038754 2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGRH 70 (79)
Q Consensus 2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 70 (79)
+.+|...|++..+..+.++..++.++.|+..+|++++|...+++++..+|+++.+..++..+....|..
T Consensus 183 ~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~ 251 (290)
T PF04733_consen 183 YQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKP 251 (290)
T ss_dssp CCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-T
T ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCC
Confidence 568889999988888889999999999999999999999999999999999998877777666655544
No 119
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.39 E-value=4.2e-06 Score=49.46 Aligned_cols=70 Identities=17% Similarity=0.159 Sum_probs=59.1
Q ss_pred CHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH---HHHHHHHHHHHHhhhc
Q 038754 1 IYHEAISCYERALTLLNRS---LSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQ---FCTEMLSLALVDEGRH 70 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~~~~ 70 (79)
+|..|...|..-++.-|++ +.++|-||.+++.+|++++|...|..+.+-.|+++ .++..++..+.+.++.
T Consensus 156 dy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~ 231 (262)
T COG1729 156 DYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNT 231 (262)
T ss_pred CHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCH
Confidence 4788999999999999875 68999999999999999999999999999998886 5566667776666554
No 120
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.38 E-value=6.8e-06 Score=48.32 Aligned_cols=71 Identities=23% Similarity=0.220 Sum_probs=64.7
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhhcC
Q 038754 1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGRHG 71 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 71 (79)
+++.|...|.+++++.|.++.+..|+|..|...|+++.|...+..+....+.+..+..++..+....|+..
T Consensus 149 r~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~ 219 (257)
T COG5010 149 RFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFR 219 (257)
T ss_pred ChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChH
Confidence 46789999999999999999999999999999999999999999999999999988888888877766543
No 121
>PRK11906 transcriptional regulator; Provisional
Probab=98.38 E-value=2.3e-06 Score=53.82 Aligned_cols=53 Identities=19% Similarity=0.109 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH
Q 038754 2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQ 54 (79)
Q Consensus 2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 54 (79)
++.|...|++++.++|+++.+|+..|++....|+.++|+...+++++++|.-.
T Consensus 354 ~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~ 406 (458)
T PRK11906 354 AKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRR 406 (458)
T ss_pred hhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhh
Confidence 57899999999999999999999999999999999999999999999999654
No 122
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.36 E-value=7.8e-06 Score=52.49 Aligned_cols=68 Identities=16% Similarity=0.182 Sum_probs=59.9
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhh
Q 038754 1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEG 68 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 68 (79)
++++|+.+.++++...|..++.+...|.++.+.|++.+|..+++.|-.+|+.|-+.-......+...|
T Consensus 209 ~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~ 276 (517)
T PF12569_consen 209 DYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAG 276 (517)
T ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCC
Confidence 47899999999999999999999999999999999999999999999999999866555555555443
No 123
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.35 E-value=2.1e-06 Score=58.17 Aligned_cols=65 Identities=22% Similarity=0.325 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH
Q 038754 2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVD 66 (79)
Q Consensus 2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 66 (79)
+.+|+..|+.+++.+|.|..+|..+|.+|...|++..|++.|.++..++|.+.......+-...+
T Consensus 578 ~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd 642 (1238)
T KOG1127|consen 578 LHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECD 642 (1238)
T ss_pred hhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHH
Confidence 56899999999999999999999999999999999999999999999999998655444433333
No 124
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=98.33 E-value=2.6e-05 Score=39.31 Aligned_cols=65 Identities=17% Similarity=0.085 Sum_probs=51.5
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC--HHHHHHHHHHHHHhhh
Q 038754 5 AISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD--QFCTEMLSLALVDEGR 69 (79)
Q Consensus 5 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~ 69 (79)
.+..+++.+..+|+++.+.+.+|..+...|++++|+..+-.+++.+|+. -.++..+-.+....|.
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 4567899999999999999999999999999999999999999999866 4566666666655543
No 125
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.32 E-value=7e-06 Score=55.47 Aligned_cols=64 Identities=11% Similarity=0.075 Sum_probs=55.7
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHh
Q 038754 4 EAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDE 67 (79)
Q Consensus 4 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 67 (79)
.++.++-..+-..+++..+++.+|.||-++|+.++|...|+++++++|+|+.+..+++-.+...
T Consensus 100 ~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~ 163 (906)
T PRK14720 100 AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE 163 (906)
T ss_pred hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh
Confidence 4556666666667888899999999999999999999999999999999999999988877764
No 126
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=8.7e-06 Score=50.43 Aligned_cols=70 Identities=27% Similarity=0.293 Sum_probs=56.8
Q ss_pred CHHHHHHHHHHHHhhCCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHH
Q 038754 1 IYHEAISCYERALTLLNR---------------SLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALV 65 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 65 (79)
+|..|...|++++..-.. -..++.|++.|+.++++|..|+..+.++|.++|+|..+....+.++.
T Consensus 223 k~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l 302 (397)
T KOG0543|consen 223 KFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALL 302 (397)
T ss_pred hHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Confidence 366777777777664431 14689999999999999999999999999999999988877777777
Q ss_pred Hhhhc
Q 038754 66 DEGRH 70 (79)
Q Consensus 66 ~~~~~ 70 (79)
..++.
T Consensus 303 ~~~e~ 307 (397)
T KOG0543|consen 303 ALGEY 307 (397)
T ss_pred hhccH
Confidence 66553
No 127
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.31 E-value=8.6e-06 Score=54.75 Aligned_cols=53 Identities=11% Similarity=0.076 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH
Q 038754 2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQ 54 (79)
Q Consensus 2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 54 (79)
+++|+..|+++++.+|+++.++..++..+...++.++|+..++++...+|++.
T Consensus 118 yd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~ 170 (822)
T PRK14574 118 WDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQ 170 (822)
T ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchH
Confidence 44555555555555555555555555555555555555555555555555533
No 128
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.31 E-value=5.5e-06 Score=50.42 Aligned_cols=71 Identities=15% Similarity=0.117 Sum_probs=62.6
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH-HHHHHHHHHHHHhhhcC
Q 038754 1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQ-FCTEMLSLALVDEGRHG 71 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~~~~~ 71 (79)
+++.|+..+.++++.+|+...+-..+|.++...|+|..|++.++.+++.||... .+...+..++...|+..
T Consensus 195 ~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~ 266 (389)
T COG2956 195 DVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPA 266 (389)
T ss_pred hHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHH
Confidence 367899999999999999999999999999999999999999999999999875 66677788887776643
No 129
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.30 E-value=1.5e-06 Score=53.45 Aligned_cols=63 Identities=24% Similarity=0.200 Sum_probs=52.9
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHH
Q 038754 1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLA 63 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 63 (79)
+|++|+.||.+.+..+|+++-.+.+.+.+|+++..+..|...+..|+.+|-....++...+.+
T Consensus 112 Ky~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~A 174 (536)
T KOG4648|consen 112 KYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQA 174 (536)
T ss_pred chhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999999999999999886655444443333
No 130
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.28 E-value=1.7e-05 Score=53.36 Aligned_cols=67 Identities=13% Similarity=-0.051 Sum_probs=59.5
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHh
Q 038754 1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDE 67 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 67 (79)
++++|+..+++.+...|.++.++..+|.++...|++..|...++.+..++|++..+....+.+....
T Consensus 431 dl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l 497 (822)
T PRK14574 431 DLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMAL 497 (822)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhh
Confidence 4688999999999999999999999999999999999999999999999999987766665555544
No 131
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.27 E-value=5.2e-06 Score=55.92 Aligned_cols=68 Identities=16% Similarity=0.239 Sum_probs=61.0
Q ss_pred CHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhh
Q 038754 1 IYHEAISCYERALTLLNRS-LSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEG 68 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 68 (79)
+|++|..+|.++++.++++ ...++.+|..|.+.|+.+.|+.+|+++++..|++...+.-++..+...+
T Consensus 322 d~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~ 390 (1018)
T KOG2002|consen 322 DFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSA 390 (1018)
T ss_pred cHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhh
Confidence 5789999999999999988 8889999999999999999999999999999999988888888877654
No 132
>PRK10941 hypothetical protein; Provisional
Probab=98.27 E-value=2.9e-05 Score=46.27 Aligned_cols=57 Identities=14% Similarity=0.038 Sum_probs=53.8
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHH
Q 038754 1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCT 57 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 57 (79)
+++.|+.+.+.++.+.|+++.-+.-.|.+|.++|++..|...++..++.-|+++.+.
T Consensus 196 ~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~ 252 (269)
T PRK10941 196 QMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISE 252 (269)
T ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHH
Confidence 478999999999999999999999999999999999999999999999999998544
No 133
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.25 E-value=1.1e-05 Score=51.37 Aligned_cols=69 Identities=23% Similarity=0.310 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhhc
Q 038754 2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGRH 70 (79)
Q Consensus 2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 70 (79)
.++|+.+|-+.-.+--++..++..++.+|-.+.+..+|++++.++..+-|++|.....+++++...|.+
T Consensus 540 ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdk 608 (840)
T KOG2003|consen 540 LDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDK 608 (840)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccch
Confidence 567777777776666777888888888888888888888888888888888888888888888776654
No 134
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.24 E-value=1e-05 Score=53.51 Aligned_cols=71 Identities=24% Similarity=0.218 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhhcCCC
Q 038754 3 HEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGRHGID 73 (79)
Q Consensus 3 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~ 73 (79)
++|..|+.++-.+.|-.+..|+..|.++...|...+|...|..++.+||+++..+..++.++...|...+.
T Consensus 667 ~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la 737 (799)
T KOG4162|consen 667 DEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLA 737 (799)
T ss_pred hHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchH
Confidence 46777899999999999999999999999999999999999999999999999999999999999866554
No 135
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.24 E-value=3.3e-05 Score=48.04 Aligned_cols=68 Identities=18% Similarity=0.042 Sum_probs=50.0
Q ss_pred CHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhh
Q 038754 1 IYHEAISCYERALTLLNRSL-STYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEG 68 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 68 (79)
+++.|..++.++.+.+|++. ......+..+...|+++.|...+++.++.+|+++.+...+..++...+
T Consensus 133 ~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~g 201 (398)
T PRK10747 133 DEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTG 201 (398)
T ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 46678888888888888764 333344778888888888888888888888888877666666655443
No 136
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.21 E-value=2.4e-05 Score=45.13 Aligned_cols=67 Identities=25% Similarity=0.168 Sum_probs=57.1
Q ss_pred CHHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHh
Q 038754 1 IYHEAISCYERALTLLNRS-----LSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDE 67 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 67 (79)
+|.+|..-|..++.+.|.- .-+|.+.|.++.+++.++.|+..+.+++.++|....+....+.++...
T Consensus 110 dyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 110 DYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKM 181 (271)
T ss_pred cHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhh
Confidence 4789999999999999964 468899999999999999999999999999999886666655555543
No 137
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=1.7e-05 Score=49.85 Aligned_cols=65 Identities=22% Similarity=0.246 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHh
Q 038754 2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDE 67 (79)
Q Consensus 2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 67 (79)
+.+++..+++.+...|+ ...+..+|.++..++.+.+|+..|..|+++||++..+...+...-+..
T Consensus 454 ~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK~~ 518 (564)
T KOG1174|consen 454 TKDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLEKSD 518 (564)
T ss_pred cchHHHHHHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHHHhcc
Confidence 56788888888887765 578899999999999999999999999999999998877776655443
No 138
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.20 E-value=3.5e-06 Score=40.84 Aligned_cols=53 Identities=25% Similarity=0.332 Sum_probs=39.5
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc----CCCCH---HHHHHHHHHHHHhhh
Q 038754 17 NRSLSTYAGLAYTYHLQDNFSAAITYYHKALWL----KPDDQ---FCTEMLSLALVDEGR 69 (79)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----~p~~~---~~~~~l~~~~~~~~~ 69 (79)
|+-..+++++|.+|..+|++++|+.+|++++.+ .++++ .++.+++.++...|+
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~ 61 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGD 61 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCC
Confidence 334678999999999999999999999999976 22332 455667777766654
No 139
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.20 E-value=6.4e-06 Score=38.78 Aligned_cols=41 Identities=24% Similarity=0.354 Sum_probs=36.3
Q ss_pred HHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhhc
Q 038754 30 YHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGRH 70 (79)
Q Consensus 30 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 70 (79)
+...|++++|+..|++++..+|++..++..++.++...|+.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~ 41 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQY 41 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-H
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCH
Confidence 35789999999999999999999999999999999887654
No 140
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.18 E-value=4e-05 Score=41.40 Aligned_cols=51 Identities=24% Similarity=0.093 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q 038754 3 HEAISCYERALTLLNRS---LSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD 53 (79)
Q Consensus 3 ~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 53 (79)
..+...++..++..|++ ..+.+.+|.+++..|++++|...|+.++...|++
T Consensus 28 ~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~ 81 (145)
T PF09976_consen 28 AKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDP 81 (145)
T ss_pred HHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCH
Confidence 34444555555555555 4455556666666666666666666666555444
No 141
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.17 E-value=1.9e-05 Score=47.78 Aligned_cols=56 Identities=21% Similarity=0.223 Sum_probs=47.2
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhh
Q 038754 14 TLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGR 69 (79)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 69 (79)
..+|..+..+..+|.++..+|++++|+..+++++.++|+++.+...++.++...|+
T Consensus 108 ~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~ 163 (355)
T cd05804 108 PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGR 163 (355)
T ss_pred cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC
Confidence 45566667777888999999999999999999999999999888888887776554
No 142
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.16 E-value=9.6e-05 Score=39.92 Aligned_cols=69 Identities=19% Similarity=0.167 Sum_probs=55.5
Q ss_pred CHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhhc
Q 038754 1 IYHEAISCYERALTLLNRS---LSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGRH 70 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 70 (79)
++++|...|+.++...|+. +.+...+|.++...|++++|+..++. +.-.+-.+.+....++++...|+.
T Consensus 63 ~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~ 134 (145)
T PF09976_consen 63 DYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDY 134 (145)
T ss_pred CHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCH
Confidence 5789999999999988665 56889999999999999999999966 333344456777788888877654
No 143
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.16 E-value=8.1e-06 Score=38.96 Aligned_cols=44 Identities=27% Similarity=0.311 Sum_probs=38.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhhc
Q 038754 27 AYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGRH 70 (79)
Q Consensus 27 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 70 (79)
..+|...++++.|+.++++++.++|+++..+...+.++...|+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~ 45 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRY 45 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccH
Confidence 56789999999999999999999999998888888888776653
No 144
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=1.1e-05 Score=50.51 Aligned_cols=60 Identities=20% Similarity=0.211 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHH
Q 038754 2 YHEAISCYERALTLLNRS----LSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLS 61 (79)
Q Consensus 2 ~~~A~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 61 (79)
+.+|-++|..+|.++|++ ..+|.++|.+..++|+.++|+...+.+++|||.-..+....+
T Consensus 265 y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra 328 (486)
T KOG0550|consen 265 YRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRA 328 (486)
T ss_pred hhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHH
Confidence 566777777888887764 456777777777778877777777777777776654433333
No 145
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.10 E-value=3.6e-05 Score=41.82 Aligned_cols=58 Identities=22% Similarity=0.358 Sum_probs=51.4
Q ss_pred CHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHcCC---------------HHHHHHHHHHHHccCCCCHHHHH
Q 038754 1 IYHEAISCYERALTLLNRSL---STYAGLAYTYHLQDN---------------FSAAITYYHKALWLKPDDQFCTE 58 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~---------------~~~A~~~~~~al~~~p~~~~~~~ 58 (79)
++++|+..+++-++++|.++ .+++..|.+++.+.. ...|+..|+++++..|++..+..
T Consensus 62 ~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~d 137 (142)
T PF13512_consen 62 DYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAAD 137 (142)
T ss_pred CHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHH
Confidence 47899999999999999874 789999999999987 88999999999999999885543
No 146
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.09 E-value=9.1e-05 Score=46.20 Aligned_cols=65 Identities=17% Similarity=0.042 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH
Q 038754 2 YHEAISCYERALTLLNRSL-STYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVD 66 (79)
Q Consensus 2 ~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 66 (79)
++.|..++.++.+..|++. .+....+.++...|+++.|...+++.++..|+++.+...+..++..
T Consensus 134 ~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~ 199 (409)
T TIGR00540 134 EARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIR 199 (409)
T ss_pred HHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 3445555555555555443 3333345555555555555555555555555555444444444433
No 147
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.08 E-value=8.7e-06 Score=53.58 Aligned_cols=67 Identities=19% Similarity=0.136 Sum_probs=57.7
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHh
Q 038754 1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDE 67 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 67 (79)
+++.|..+|..++.++|++..+|+|++.+|.+.++..+|...+.+|++.+-++...|.++..+..+.
T Consensus 534 k~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdv 600 (777)
T KOG1128|consen 534 KEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDV 600 (777)
T ss_pred hhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhc
Confidence 4678999999999999999999999999999999999999999999999977765555554444443
No 148
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.08 E-value=8.2e-06 Score=35.63 Aligned_cols=28 Identities=29% Similarity=0.188 Sum_probs=26.1
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 038754 1 IYHEAISCYERALTLLNRSLSTYAGLAY 28 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 28 (79)
++++|+.+|+++++.+|+++.+|..+|.
T Consensus 16 ~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 16 QPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 5789999999999999999999999885
No 149
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.03 E-value=8.2e-05 Score=47.95 Aligned_cols=67 Identities=19% Similarity=0.072 Sum_probs=59.9
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHh
Q 038754 1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDE 67 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 67 (79)
++++|+..+.+.-..-.+....+-..|.++.++|++++|...|...+..+|+|...+..+..++.-.
T Consensus 19 ~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~ 85 (517)
T PF12569_consen 19 DYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQ 85 (517)
T ss_pred CHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhh
Confidence 4678899888888888888999999999999999999999999999999999999888888887433
No 150
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=5e-05 Score=47.83 Aligned_cols=68 Identities=12% Similarity=0.066 Sum_probs=61.1
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhh
Q 038754 1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEG 68 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 68 (79)
++..|+.+-.++++.+|.+..++...|.++...+++.+|+-.|+.|..+.|..-.++..+-+.+...+
T Consensus 315 ~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~ 382 (564)
T KOG1174|consen 315 KFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQK 382 (564)
T ss_pred hHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhc
Confidence 46789999999999999999999999999999999999999999999999999888887777666544
No 151
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=4.8e-05 Score=49.06 Aligned_cols=52 Identities=21% Similarity=0.262 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q 038754 2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD 53 (79)
Q Consensus 2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 53 (79)
+.+|.++|.++..++|....+|..+|..|.-.|+.++|+.+|..|-++-|+.
T Consensus 328 ~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~ 379 (611)
T KOG1173|consen 328 YSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGC 379 (611)
T ss_pred cHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCC
Confidence 4566777777777777777777777777777777777777777776666644
No 152
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.99 E-value=4e-06 Score=52.84 Aligned_cols=53 Identities=23% Similarity=0.256 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH
Q 038754 2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQ 54 (79)
Q Consensus 2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 54 (79)
|+.|+..|.++++++|+.+..+.+.+.++.+.+++..|+....++++++|+..
T Consensus 20 fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~ 72 (476)
T KOG0376|consen 20 FDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYI 72 (476)
T ss_pred HHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhh
Confidence 44455555555555555555455555555555555555555555555554443
No 153
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.99 E-value=1e-05 Score=33.61 Aligned_cols=30 Identities=23% Similarity=0.356 Sum_probs=26.6
Q ss_pred HHHHHHccCCCCHHHHHHHHHHHHHhhhcC
Q 038754 42 YYHKALWLKPDDQFCTEMLSLALVDEGRHG 71 (79)
Q Consensus 42 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 71 (79)
+|+++++++|+++.++.+++.++...|+..
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~ 30 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYE 30 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHH
Confidence 489999999999999999999999877643
No 154
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.98 E-value=4.2e-05 Score=44.65 Aligned_cols=55 Identities=20% Similarity=0.222 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHH
Q 038754 4 EAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTE 58 (79)
Q Consensus 4 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 58 (79)
-|.-.|.+++.+.|+-|.+++-+|.-+...|+++.|.+.|..++++||+...+..
T Consensus 83 LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~l 137 (297)
T COG4785 83 LARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHL 137 (297)
T ss_pred HHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHh
Confidence 3555678888888888888888888888888888888888888888887764443
No 155
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=97.97 E-value=3.5e-05 Score=47.04 Aligned_cols=58 Identities=19% Similarity=0.234 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHH
Q 038754 2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEM 59 (79)
Q Consensus 2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 59 (79)
.++|...|..++.+.|+++.++..+|...-..++.-+|=.+|-+|+.++|.|..+..+
T Consensus 132 ~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvn 189 (472)
T KOG3824|consen 132 LEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVN 189 (472)
T ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhh
Confidence 5789999999999999999999999999999999999999999999999999855443
No 156
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.97 E-value=3.3e-05 Score=48.22 Aligned_cols=54 Identities=22% Similarity=0.265 Sum_probs=46.5
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH
Q 038754 1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQ 54 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 54 (79)
+++.|+.+.++++++.|++..+|+.++.+|..+|+++.|+..+.-+--..+.+.
T Consensus 249 ~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~~~~k 302 (395)
T PF09295_consen 249 KYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPMLTYKDK 302 (395)
T ss_pred CHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCCCccc
Confidence 478999999999999999999999999999999999999987775555444443
No 157
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.97 E-value=0.00013 Score=47.05 Aligned_cols=67 Identities=18% Similarity=0.097 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhhc
Q 038754 3 HEAISCYERALTL--LNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGRH 70 (79)
Q Consensus 3 ~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 70 (79)
..+.....+++.+ +|.++.++..+|..+...|++++|...+++++.++| +..++..++.++...|+.
T Consensus 401 ~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~ 469 (517)
T PRK10153 401 AALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDN 469 (517)
T ss_pred HHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCH
Confidence 3455555665554 777889999999999999999999999999999999 477888888888877653
No 158
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=1.1e-05 Score=50.51 Aligned_cols=57 Identities=21% Similarity=0.217 Sum_probs=53.1
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHH
Q 038754 1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCT 57 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 57 (79)
+|..|+..+..+++..|++...|.+.+.++...+++++|...+++.++++|+++..+
T Consensus 64 ~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~ 120 (486)
T KOG0550|consen 64 TYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQ 120 (486)
T ss_pred hHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccc
Confidence 478899999999999999999999999999999999999999999999999987433
No 159
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=97.95 E-value=3.7e-05 Score=32.62 Aligned_cols=30 Identities=27% Similarity=0.385 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 038754 20 LSTYAGLAYTYHLQDNFSAAITYYHKALWL 49 (79)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 49 (79)
..++.++|.+|..+|++++|+.++++++.+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 357899999999999999999999999986
No 160
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.92 E-value=0.00018 Score=44.76 Aligned_cols=69 Identities=19% Similarity=0.047 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhhcC
Q 038754 2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGRHG 71 (79)
Q Consensus 2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 71 (79)
..+-+...++.++.+|++|..++.+|..+++.+.+.+|..+++.+++..|+.. .+..+++++...|+..
T Consensus 310 ~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~-~~~~la~~~~~~g~~~ 378 (400)
T COG3071 310 PEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSAS-DYAELADALDQLGEPE 378 (400)
T ss_pred chHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChh-hHHHHHHHHHHcCChH
Confidence 34556778889999999999999999999999999999999999999998654 3456788877776543
No 161
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.92 E-value=4.9e-05 Score=45.67 Aligned_cols=60 Identities=22% Similarity=0.154 Sum_probs=50.0
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHccCCCCHHHHHHH
Q 038754 1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNF-SAAITYYHKALWLKPDDQFCTEML 60 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~l 60 (79)
+|++|...+.+++..+|+++.++.|+..+...+|+. +.+.+...+....+|++++....-
T Consensus 216 ~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~~~~ 276 (290)
T PF04733_consen 216 HYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLVKDLA 276 (290)
T ss_dssp -HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHHHHHH
T ss_pred CHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHHHHHH
Confidence 589999999999999999999999999999999999 556677788788999999766543
No 162
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.90 E-value=0.00012 Score=47.91 Aligned_cols=63 Identities=22% Similarity=0.342 Sum_probs=56.4
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHH
Q 038754 1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLA 63 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 63 (79)
+|++|+.||+.|+.++|++...|.-++..-.++++++.....-.+.+++.|+....|..++.+
T Consensus 90 ~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs 152 (700)
T KOG1156|consen 90 KYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVA 152 (700)
T ss_pred hHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 589999999999999999999999999999999999999999999999999987555444433
No 163
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=97.87 E-value=0.00025 Score=38.40 Aligned_cols=67 Identities=19% Similarity=0.208 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHh-hCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHH---HHHHHHHhh
Q 038754 2 YHEAISCYERALT-LLNR-SLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEM---LSLALVDEG 68 (79)
Q Consensus 2 ~~~A~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~---l~~~~~~~~ 68 (79)
..+++.++..+++ -+|. .-.+.+-++..+++.++|+.++.+.+..++..|+|..+... +.+.+...|
T Consensus 51 v~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk~~ied~itkeg 122 (149)
T KOG3364|consen 51 VQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELKETIEDKITKEG 122 (149)
T ss_pred HHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhcc
Confidence 4678889999997 4443 46788889999999999999999999999999999977644 344444433
No 164
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=97.87 E-value=2e-05 Score=53.29 Aligned_cols=67 Identities=21% Similarity=0.247 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc--CCCCHHHHHHHHHHHHHhh
Q 038754 2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWL--KPDDQFCTEMLSLALVDEG 68 (79)
Q Consensus 2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~ 68 (79)
+.+|..+|.++.+.-.+.+++|.|+|.||..+|+|..|++.|+.+++- ..+++.+...|+.+.-..+
T Consensus 662 ~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~ 730 (1018)
T KOG2002|consen 662 FSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAG 730 (1018)
T ss_pred chHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhh
Confidence 344555555554444445566666666666666666666666666643 2234455555555554443
No 165
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.87 E-value=4.3e-05 Score=48.37 Aligned_cols=73 Identities=15% Similarity=0.101 Sum_probs=63.5
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhhcCCC
Q 038754 1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGRHGID 73 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~ 73 (79)
++..|+..+.++++++|....+|+..|.+....+++.+|+..|+....+.|+++.+...+..+-.-..+...+
T Consensus 53 ~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~fe 125 (476)
T KOG0376|consen 53 SFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEEKFE 125 (476)
T ss_pred hhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHHhhh
Confidence 3678999999999999999999999999999999999999999999999999998888876666555444433
No 166
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.86 E-value=2.2e-05 Score=48.19 Aligned_cols=47 Identities=15% Similarity=0.267 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 038754 3 HEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWL 49 (79)
Q Consensus 3 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 49 (79)
+-|+.+|++++...-.+|..+.|+|.|.+..++++-++..|++++..
T Consensus 341 E~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlst 387 (478)
T KOG1129|consen 341 EMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALST 387 (478)
T ss_pred HHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhh
Confidence 34555555555555555555555555555555555555555555544
No 167
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.86 E-value=0.00017 Score=38.79 Aligned_cols=48 Identities=25% Similarity=0.234 Sum_probs=37.3
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 038754 1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALW 48 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 48 (79)
++++|+..+++++..+|.+-.++..+-.+|..+|+...|+..|++..+
T Consensus 77 ~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 77 DYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp -HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 367788888888888888888888888888888888888888877744
No 168
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=97.85 E-value=0.00025 Score=41.72 Aligned_cols=62 Identities=24% Similarity=0.236 Sum_probs=53.7
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH
Q 038754 5 AISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVD 66 (79)
Q Consensus 5 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 66 (79)
|..+|.+|+.+.|++...|+.+|.++...|+.-.|+-+|-+++-...-++.+..++...+..
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 68899999999999999999999999999999999999999997766668888888888887
No 169
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=0.00026 Score=43.48 Aligned_cols=59 Identities=22% Similarity=0.222 Sum_probs=50.2
Q ss_pred CHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHH
Q 038754 1 IYHEAISCYERALTLLNRS----LSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEM 59 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 59 (79)
+|..|...|.+.++..-.+ ..+|+|.+-|.+.+|+|+.|+....++++++|++..++..
T Consensus 96 ryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R 158 (390)
T KOG0551|consen 96 RYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIR 158 (390)
T ss_pred hHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhh
Confidence 4788999999999877554 5688999999999999999999999999999999854433
No 170
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=97.80 E-value=8.4e-05 Score=43.61 Aligned_cols=56 Identities=25% Similarity=0.237 Sum_probs=51.5
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHH
Q 038754 1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFC 56 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 56 (79)
+.+.+.+.|.+++.+.|.....|+.+|....+.|+++.|...|++.++++|.+...
T Consensus 10 D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~g 65 (287)
T COG4976 10 DAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHGG 65 (287)
T ss_pred ChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccccc
Confidence 45678899999999999999999999999999999999999999999999987633
No 171
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=97.79 E-value=0.001 Score=36.86 Aligned_cols=68 Identities=12% Similarity=0.058 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhh
Q 038754 2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGR 69 (79)
Q Consensus 2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 69 (79)
++++...+..+--+.|+.+..-..-|+.+...|++.+|+..++.+..-.|..+.+...++.++...++
T Consensus 26 ~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 26 PDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGD 93 (160)
T ss_pred hHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCC
Confidence 56778888888889999999999999999999999999999999999999999888888888776554
No 172
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.79 E-value=4.5e-05 Score=44.54 Aligned_cols=59 Identities=12% Similarity=0.056 Sum_probs=54.2
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHH
Q 038754 1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEM 59 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 59 (79)
+|+.|.+.|..+++++|..-.++.|.|..++--|++.-|.+.+.+--+-||+||+...+
T Consensus 114 ~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LW 172 (297)
T COG4785 114 NFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLW 172 (297)
T ss_pred cchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHH
Confidence 47889999999999999999999999999999999999999999999999999955433
No 173
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.78 E-value=0.00023 Score=45.66 Aligned_cols=65 Identities=20% Similarity=0.139 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH
Q 038754 2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVD 66 (79)
Q Consensus 2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 66 (79)
..+|++++.++..+-|++|..+..+|.+|-+-|+..+|++++-...+.-|.+.....+++..+.+
T Consensus 574 ~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyid 638 (840)
T KOG2003|consen 574 PAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYID 638 (840)
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHh
Confidence 56899999999999999999999999999999998888888888888888887666666555443
No 174
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.75 E-value=0.00071 Score=40.27 Aligned_cols=68 Identities=21% Similarity=0.179 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhh
Q 038754 2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGR 69 (79)
Q Consensus 2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 69 (79)
.+-|..|+......-|.++..-...|..+-.+|.+++|+++|+..+.-||.|.-.+..---++...|+
T Consensus 68 ~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK 135 (289)
T KOG3060|consen 68 DDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGK 135 (289)
T ss_pred hHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCC
Confidence 34577777777777788888888888888888888888888888888888887666554444444443
No 175
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.74 E-value=7e-05 Score=46.11 Aligned_cols=62 Identities=21% Similarity=0.292 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHH
Q 038754 2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLA 63 (79)
Q Consensus 2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 63 (79)
+++|+.+|+.+++.+|.+.++.-.+|.-|+.-++++-|+.+|++.+++.-.++....+++-+
T Consensus 306 ~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLC 367 (478)
T KOG1129|consen 306 QEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLC 367 (478)
T ss_pred HHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHH
Confidence 34555555555555555555555555555555555555555555555555555444444433
No 176
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.72 E-value=0.00023 Score=43.49 Aligned_cols=56 Identities=25% Similarity=0.274 Sum_probs=51.6
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHH
Q 038754 1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFC 56 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 56 (79)
+|.+|+.++..-.+.+|.+...+..+|.||+...++..|-.||++.-.+.|.-...
T Consensus 25 ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qY 80 (459)
T KOG4340|consen 25 RYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQY 80 (459)
T ss_pred hHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHH
Confidence 47889999999999999999999999999999999999999999999999976633
No 177
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.68 E-value=0.00036 Score=41.25 Aligned_cols=54 Identities=26% Similarity=0.357 Sum_probs=49.9
Q ss_pred CHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH
Q 038754 1 IYHEAISCYERALTLLNRS---LSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQ 54 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 54 (79)
+|.+|...|+.+...+|.+ ..+...++.++++.+++++|+...++-+++.|+++
T Consensus 49 n~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~ 105 (254)
T COG4105 49 NYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHP 105 (254)
T ss_pred CHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCC
Confidence 5789999999999999865 57899999999999999999999999999999987
No 178
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=97.66 E-value=0.00044 Score=45.90 Aligned_cols=67 Identities=18% Similarity=0.081 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhh
Q 038754 2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEG 68 (79)
Q Consensus 2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 68 (79)
.++|+.+++++++.-|+....|..+|.++.++++.+.|...|...++.-|..+..|..+.++-...|
T Consensus 667 ~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~ 733 (913)
T KOG0495|consen 667 VEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDG 733 (913)
T ss_pred HHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhc
Confidence 5789999999999999999999999999999999999999999999999999888877777665554
No 179
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.66 E-value=0.00084 Score=39.46 Aligned_cols=68 Identities=18% Similarity=0.002 Sum_probs=50.9
Q ss_pred CHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcC---------------C---HHHHHHHHHHHHccCCCCH---HH
Q 038754 1 IYHEAISCYERALTLLNRS---LSTYAGLAYTYHLQD---------------N---FSAAITYYHKALWLKPDDQ---FC 56 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~---------------~---~~~A~~~~~~al~~~p~~~---~~ 56 (79)
++++|+..+++.++..|++ +.+++.+|.++...+ + ...|+..|+..++..|+.. .+
T Consensus 84 ~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A 163 (243)
T PRK10866 84 DLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDA 163 (243)
T ss_pred CHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHH
Confidence 5789999999999999986 578999998875554 1 2468899999999999987 33
Q ss_pred HHHHHHHHHHhh
Q 038754 57 TEMLSLALVDEG 68 (79)
Q Consensus 57 ~~~l~~~~~~~~ 68 (79)
...+..+....+
T Consensus 164 ~~rl~~l~~~la 175 (243)
T PRK10866 164 TKRLVFLKDRLA 175 (243)
T ss_pred HHHHHHHHHHHH
Confidence 343444444333
No 180
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.66 E-value=0.00094 Score=39.97 Aligned_cols=68 Identities=15% Similarity=0.070 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhh
Q 038754 2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGR 69 (79)
Q Consensus 2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 69 (79)
+.+|.-+|++.-+.-|..+..+...+.|...++++++|...++.+|.-++++|.+..++.-+....|.
T Consensus 189 ~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gk 256 (299)
T KOG3081|consen 189 IQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGK 256 (299)
T ss_pred hhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCC
Confidence 46777888888887788899999999999999999999999999999999999777776555554443
No 181
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.63 E-value=0.00055 Score=44.15 Aligned_cols=68 Identities=21% Similarity=0.231 Sum_probs=53.2
Q ss_pred CHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc-----CCCCH---HHHHHHHHHH
Q 038754 1 IYHEAISCYERALTL--------LNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWL-----KPDDQ---FCTEMLSLAL 64 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~---~~~~~l~~~~ 64 (79)
+|++|+..|..+++. +|.-......+|.+|..++++.+|+..|++|+.+ .++|+ .+..+|+.++
T Consensus 214 ~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly 293 (508)
T KOG1840|consen 214 RLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLY 293 (508)
T ss_pred cHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 588999999999998 5555566667999999999999999999999987 35666 4445555555
Q ss_pred HHhh
Q 038754 65 VDEG 68 (79)
Q Consensus 65 ~~~~ 68 (79)
-..|
T Consensus 294 ~~~G 297 (508)
T KOG1840|consen 294 YKQG 297 (508)
T ss_pred hccC
Confidence 4433
No 182
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.61 E-value=0.00091 Score=35.42 Aligned_cols=48 Identities=23% Similarity=0.164 Sum_probs=43.9
Q ss_pred CHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 038754 1 IYHEAISCYERALTLLNR---SLSTYAGLAYTYHLQDNFSAAITYYHKALW 48 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 48 (79)
++++|+..+++.+...|+ +..+...++.++...|++++|+.++-.++.
T Consensus 53 ~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 53 RYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred CHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 578999999999999898 888889999999999999999999988775
No 183
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.59 E-value=0.0017 Score=38.73 Aligned_cols=57 Identities=14% Similarity=0.123 Sum_probs=51.4
Q ss_pred CHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHH
Q 038754 1 IYHEAISCYERALTLLNRS---LSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCT 57 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 57 (79)
++++|...|..+++..|++ |++++.+|.+...+|+.+.|...|+++++..|+...+.
T Consensus 193 ~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~ 252 (262)
T COG1729 193 DYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAK 252 (262)
T ss_pred cchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHH
Confidence 4788999999999988765 79999999999999999999999999999999987554
No 184
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.55 E-value=0.00037 Score=47.52 Aligned_cols=48 Identities=23% Similarity=0.263 Sum_probs=44.6
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 038754 1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWL 49 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 49 (79)
++++|...|+++++.+|+++.+++++|..|... +.++|+.++.+|+..
T Consensus 131 ~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~ 178 (906)
T PRK14720 131 ENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR 178 (906)
T ss_pred ChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 367899999999999999999999999999999 999999999999876
No 185
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=97.50 E-value=0.0025 Score=35.02 Aligned_cols=69 Identities=13% Similarity=0.043 Sum_probs=59.4
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhh
Q 038754 1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGR 69 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 69 (79)
++.++...+..+--+.|+.+..-..-|+++...|++.+|+..++....-.+..+.+...+..++...++
T Consensus 25 d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 25 DPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred CHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 356777788888888999999999999999999999999999999999998888888788777776554
No 186
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.50 E-value=0.001 Score=40.87 Aligned_cols=69 Identities=20% Similarity=0.172 Sum_probs=57.7
Q ss_pred CHHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhh
Q 038754 1 IYHEAISCYERALTLLNRS-----LSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGR 69 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 69 (79)
+|++|+...++..++.+.. +..+..++..+....+++.|+..+.+|++-+|+...+-..++++....|+
T Consensus 156 eW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~ 229 (389)
T COG2956 156 EWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGD 229 (389)
T ss_pred HHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccc
Confidence 4789999999999998865 56778888888899999999999999999999998777777777665554
No 187
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.49 E-value=0.0038 Score=33.51 Aligned_cols=51 Identities=27% Similarity=0.371 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhhc
Q 038754 20 LSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGRH 70 (79)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 70 (79)
..+...++..+...|+++.|+..+++++.++|.+..++..+..++...|+.
T Consensus 62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~ 112 (146)
T PF03704_consen 62 LDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRR 112 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCH
Confidence 457777888899999999999999999999999998888888888777654
No 188
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.49 E-value=0.00083 Score=38.33 Aligned_cols=67 Identities=24% Similarity=0.243 Sum_probs=48.3
Q ss_pred CHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHcCC-----------HHHHHHHHHHHHccCCCCHHH---HHHHHHH
Q 038754 1 IYHEAISCYERALTLLNRSL---STYAGLAYTYHLQDN-----------FSAAITYYHKALWLKPDDQFC---TEMLSLA 63 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-----------~~~A~~~~~~al~~~p~~~~~---~~~l~~~ 63 (79)
++++|+..+++.++..|+++ .+++.+|.+++.+.. ..+|+..|+..+...|+++.+ ...+..+
T Consensus 57 ~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l 136 (203)
T PF13525_consen 57 DYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAEL 136 (203)
T ss_dssp -HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHH
Confidence 57899999999999999874 689999999876543 347999999999999999733 3344444
Q ss_pred HHHh
Q 038754 64 LVDE 67 (79)
Q Consensus 64 ~~~~ 67 (79)
....
T Consensus 137 ~~~l 140 (203)
T PF13525_consen 137 RNRL 140 (203)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4333
No 189
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=97.46 E-value=0.00089 Score=28.11 Aligned_cols=34 Identities=24% Similarity=0.357 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHH--HHHHHccCCCC
Q 038754 20 LSTYAGLAYTYHLQDNFSAAITY--YHKALWLKPDD 53 (79)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~A~~~--~~~al~~~p~~ 53 (79)
++.++.+|..+..+|++++|+.. |.-+..++|.|
T Consensus 1 ~e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 1 PEYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred CcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 35688899999999999999999 55888888764
No 190
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.37 E-value=0.00042 Score=44.68 Aligned_cols=50 Identities=36% Similarity=0.454 Sum_probs=43.3
Q ss_pred CHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 038754 1 IYHEAISCYERALTLL--------NRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLK 50 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 50 (79)
++.+|+..|.+++++- |.-..++.++|.+|...|++++|..++++|+.|.
T Consensus 256 k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~ 313 (508)
T KOG1840|consen 256 KYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIY 313 (508)
T ss_pred cHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHH
Confidence 4788999999988753 4456899999999999999999999999999884
No 191
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.36 E-value=0.00059 Score=41.06 Aligned_cols=54 Identities=13% Similarity=0.121 Sum_probs=50.6
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH
Q 038754 1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQ 54 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 54 (79)
+|..|...+.+++..+|.++.+.++.|.|...+|+..+|++..+.++.++|.+.
T Consensus 267 n~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 267 NFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred chHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 466788899999999999999999999999999999999999999999999876
No 192
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.32 E-value=0.0012 Score=43.48 Aligned_cols=58 Identities=24% Similarity=0.290 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHH
Q 038754 3 HEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEML 60 (79)
Q Consensus 3 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 60 (79)
.+|-..+.+++.++...|..++.+|.+|..+.+.+.|++.+++|++++|+++.+...+
T Consensus 659 ~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l 716 (886)
T KOG4507|consen 659 LDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSL 716 (886)
T ss_pred ccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHH
Confidence 3567778888999988899999999999999999999999999999999999776554
No 193
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.0004 Score=41.00 Aligned_cols=48 Identities=19% Similarity=0.103 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 038754 2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWL 49 (79)
Q Consensus 2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 49 (79)
|+.....++++++++|+...+++.+|.+......+++|+..++++..+
T Consensus 60 ~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 60 WEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSL 107 (284)
T ss_pred hhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 667788899999999999999999999999999999999999999765
No 194
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.27 E-value=3.6e-05 Score=47.14 Aligned_cols=53 Identities=25% Similarity=0.241 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH
Q 038754 2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQ 54 (79)
Q Consensus 2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 54 (79)
+++|+..|..+++++|.....+...+.++.++++...|+..|..++.++|+..
T Consensus 130 ~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa 182 (377)
T KOG1308|consen 130 FDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSA 182 (377)
T ss_pred hhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccc
Confidence 57788889999999999999999999999999999999999999999999775
No 195
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.0037 Score=37.39 Aligned_cols=53 Identities=21% Similarity=0.102 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH
Q 038754 2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQ 54 (79)
Q Consensus 2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 54 (79)
|-++++.++.+++.+|++..+++..|.+....=+..+|...+.++|+++|.-.
T Consensus 246 ~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsla 298 (329)
T KOG0545|consen 246 YYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLA 298 (329)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhH
Confidence 55788889999999999999999999999999999999999999999999754
No 196
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=97.26 E-value=0.0032 Score=37.63 Aligned_cols=57 Identities=18% Similarity=0.135 Sum_probs=52.5
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHH
Q 038754 1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCT 57 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 57 (79)
+++.|..+.++.+.++|.++.-+.-.|.+|.++|.+.-|+..+...+..-|+++.+-
T Consensus 196 ~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~ 252 (269)
T COG2912 196 QWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAE 252 (269)
T ss_pred chHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHH
Confidence 367899999999999999999999999999999999999999999999999988443
No 197
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.25 E-value=0.0047 Score=36.99 Aligned_cols=64 Identities=16% Similarity=0.059 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH
Q 038754 3 HEAISCYERALTLLNRSLSTYAGLAYTYHL-QDNFSAAITYYHKALWLKPDDQFCTEMLSLALVD 66 (79)
Q Consensus 3 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 66 (79)
+.|..+|.++.+..+....+|...|..-+. .++.+.|...|+.+++.-|.+...+..+.+-+..
T Consensus 18 ~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 18 EAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 455566666665444556666666666445 3444446666666666666666555444444443
No 198
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=97.16 E-value=0.00087 Score=25.91 Aligned_cols=24 Identities=17% Similarity=0.027 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH
Q 038754 21 STYAGLAYTYHLQDNFSAAITYYH 44 (79)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~A~~~~~ 44 (79)
.+.+.+|.++..+|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 567899999999999999998875
No 199
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.0014 Score=40.39 Aligned_cols=56 Identities=20% Similarity=0.255 Sum_probs=49.7
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHH
Q 038754 1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFC 56 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 56 (79)
+|..|+..++++++++|.+..+++.-+.|++.+.++.+|..+++..+.++-....+
T Consensus 134 NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~K~~ 189 (390)
T KOG0551|consen 134 NYRSALNDCSAALKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDEAKKA 189 (390)
T ss_pred HHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 36789999999999999999999999999999999999999999998887555433
No 200
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=97.11 E-value=0.0012 Score=28.04 Aligned_cols=30 Identities=33% Similarity=0.376 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 038754 21 STYAGLAYTYHLQDNFSAAITYYHKALWLK 50 (79)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 50 (79)
.++..+|.+-...++|++|+..|++++.+.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 578889999999999999999999999874
No 201
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.10 E-value=0.0084 Score=37.73 Aligned_cols=64 Identities=22% Similarity=0.274 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHH
Q 038754 2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALV 65 (79)
Q Consensus 2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 65 (79)
|++|+..|.+++.-+|......-.++.||+++.=++-+.+.+.--++.-|+.+++........-
T Consensus 167 YQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~f 230 (557)
T KOG3785|consen 167 YQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLF 230 (557)
T ss_pred HHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHh
Confidence 6899999999999999998899999999999999999998888889999999988766655443
No 202
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.09 E-value=0.0058 Score=39.70 Aligned_cols=50 Identities=12% Similarity=0.031 Sum_probs=44.2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHh
Q 038754 18 RSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDE 67 (79)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 67 (79)
++...+|+.|..|...|++-.|.+||.+++..-..+|..|..++.+..-.
T Consensus 333 ks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 333 KSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred cchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999998888887665543
No 203
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.07 E-value=0.011 Score=35.42 Aligned_cols=53 Identities=13% Similarity=0.159 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH
Q 038754 2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQ 54 (79)
Q Consensus 2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 54 (79)
.+.|..+|+.+++.-|.+...|..+...+...|+.+.|...|++++..-|...
T Consensus 52 ~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~ 104 (280)
T PF05843_consen 52 PKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEK 104 (280)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchh
Confidence 34599999999999999999999999999999999999999999998877655
No 204
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.98 E-value=0.0067 Score=36.31 Aligned_cols=63 Identities=14% Similarity=0.086 Sum_probs=48.7
Q ss_pred CHHHHHHHHHHHHhh--------CCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHH
Q 038754 1 IYHEAISCYERALTL--------LNRS----------LSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSL 62 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~--------~~~~----------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 62 (79)
+|.+|...|+.++.. .|.+ ...+.|++.|+...|+|-++++.....|..+|++..++...++
T Consensus 193 ~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRak 272 (329)
T KOG0545|consen 193 RYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAK 272 (329)
T ss_pred cHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 356666666666542 3544 4588999999999999999999999999999999866655444
Q ss_pred H
Q 038754 63 A 63 (79)
Q Consensus 63 ~ 63 (79)
+
T Consensus 273 A 273 (329)
T KOG0545|consen 273 A 273 (329)
T ss_pred H
Confidence 4
No 205
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=96.97 E-value=0.0071 Score=40.55 Aligned_cols=69 Identities=17% Similarity=0.032 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhhcC
Q 038754 2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGRHG 71 (79)
Q Consensus 2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 71 (79)
++.|..+|.++....|. ..+|+..+.+...++..++|+..++.+++..|+++..+.+++......+...
T Consensus 634 ~eraR~llakar~~sgT-eRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie 702 (913)
T KOG0495|consen 634 LERARDLLAKARSISGT-ERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIE 702 (913)
T ss_pred HHHHHHHHHHHhccCCc-chhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHH
Confidence 56677777777666554 5778888888888999999999999999999999988888888887766544
No 206
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=96.95 E-value=0.009 Score=38.71 Aligned_cols=54 Identities=13% Similarity=0.062 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHccCCCCHHH
Q 038754 3 HEAISCYERALTLLNRSLSTYAGLAYTYHLQDN-FSAAITYYHKALWLKPDDQFC 56 (79)
Q Consensus 3 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~al~~~p~~~~~ 56 (79)
.+--..|.+++..+|++++.|..-|...+..+. .+.|...+.++|+.+|+++..
T Consensus 122 ~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~L 176 (568)
T KOG2396|consen 122 GEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKL 176 (568)
T ss_pred hHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHH
Confidence 344567889999999999999988888777776 888999999999999999833
No 207
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=96.94 E-value=0.0047 Score=38.66 Aligned_cols=59 Identities=19% Similarity=0.107 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHH
Q 038754 2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEML 60 (79)
Q Consensus 2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 60 (79)
|..|...|..++.++.....+|...|.+...+|...+|...++.+|.+.|.+......+
T Consensus 147 FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~ 205 (536)
T KOG4648|consen 147 FAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSL 205 (536)
T ss_pred HHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHH
Confidence 56788889999999999999999999999999999999999999999999987544433
No 208
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.89 E-value=0.023 Score=32.96 Aligned_cols=52 Identities=13% Similarity=0.142 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q 038754 2 YHEAISCYERALTLLNR------SLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD 53 (79)
Q Consensus 2 ~~~A~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 53 (79)
+..|+..|.++++.... ...+.+.+|.+..+.|++++|+.+|.+++.....+
T Consensus 141 l~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s 198 (214)
T PF09986_consen 141 LRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKAS 198 (214)
T ss_pred HHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence 35788999999987743 36789999999999999999999999999765433
No 209
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=96.85 E-value=0.015 Score=29.29 Aligned_cols=51 Identities=20% Similarity=0.200 Sum_probs=38.4
Q ss_pred CHHHHHHHHHHHHhhCC----CC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 038754 1 IYHEAISCYERALTLLN----RS-----LSTYAGLAYTYHLQDNFSAAITYYHKALWLKP 51 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~----~~-----~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 51 (79)
+|..|++.+.+.+.... .. ..++.++|.++...|++++|+..++.++++-.
T Consensus 13 dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 13 DYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred CHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 45667666555555432 22 46788899999999999999999999998843
No 210
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.84 E-value=0.012 Score=35.37 Aligned_cols=58 Identities=21% Similarity=0.133 Sum_probs=50.5
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHccCCCCHHHHH
Q 038754 1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAIT-YYHKALWLKPDDQFCTE 58 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~-~~~~al~~~p~~~~~~~ 58 (79)
+|++|...++.++..++++|.++.|+-.+-..+|...++.. ...+....+|.+++...
T Consensus 222 ~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~vk~ 280 (299)
T KOG3081|consen 222 RYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFVKH 280 (299)
T ss_pred CHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHHHH
Confidence 68999999999999999999999999999999999877654 46677788999996653
No 211
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.82 E-value=0.014 Score=39.09 Aligned_cols=68 Identities=16% Similarity=0.266 Sum_probs=56.6
Q ss_pred CHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhh
Q 038754 1 IYHEAISCYERALTLLNRS------LSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEG 68 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 68 (79)
+|..++++|...+.--|+| .....+++.||..+.+.+.|.+.++.|-+.+|++++....+-......+
T Consensus 369 ~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~ 442 (872)
T KOG4814|consen 369 KYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAED 442 (872)
T ss_pred HHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhc
Confidence 4778889999888877654 5678899999999999999999999999999999988777665554443
No 212
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.75 E-value=0.0015 Score=26.43 Aligned_cols=19 Identities=42% Similarity=0.581 Sum_probs=16.5
Q ss_pred CHHHHHHHHHHHHhhCCCC
Q 038754 1 IYHEAISCYERALTLLNRS 19 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~ 19 (79)
++++|+.+|+++++++|++
T Consensus 16 ~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 16 DYEEALEYYQRALELDPDN 34 (34)
T ss_dssp -HHHHHHHHHHHHHHSTTH
T ss_pred CchHHHHHHHHHHHHCcCC
Confidence 4789999999999999974
No 213
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.74 E-value=0.0026 Score=25.55 Aligned_cols=19 Identities=42% Similarity=0.581 Sum_probs=16.7
Q ss_pred CHHHHHHHHHHHHhhCCCC
Q 038754 1 IYHEAISCYERALTLLNRS 19 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~ 19 (79)
++++|+.+|+++++++|++
T Consensus 16 ~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 16 NYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp -HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHHHCcCC
Confidence 5789999999999999975
No 214
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=96.67 E-value=0.027 Score=30.70 Aligned_cols=62 Identities=15% Similarity=0.141 Sum_probs=47.9
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhhcCC
Q 038754 10 ERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGRHGI 72 (79)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 72 (79)
.+.+++- ...+.....+...+..|++..|....+.++..+|+|..++....+++...+....
T Consensus 61 ~~~v~l~-GG~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~ 122 (141)
T PF14863_consen 61 KRYVELA-GGADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSE 122 (141)
T ss_dssp HHHHHHT-TCHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhcc
Confidence 3344443 2356777888889999999999999999999999999999999999998887654
No 215
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.60 E-value=0.0085 Score=35.82 Aligned_cols=50 Identities=24% Similarity=0.260 Sum_probs=40.1
Q ss_pred CHHHHHHHHHHHHhhCC--CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 038754 1 IYHEAISCYERALTLLN--RS----LSTYAGLAYTYHLQDNFSAAITYYHKALWLK 50 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 50 (79)
++++|+.+|+++++.-. ++ ..++..+|.++..+|+|.+|+..|+++....
T Consensus 130 d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~ 185 (282)
T PF14938_consen 130 DYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKC 185 (282)
T ss_dssp -HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 47889999999988642 22 4688899999999999999999999998753
No 216
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=96.53 E-value=0.036 Score=32.75 Aligned_cols=55 Identities=15% Similarity=0.100 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHH
Q 038754 2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFC 56 (79)
Q Consensus 2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 56 (79)
..+++...+.-++.+|.+......+-..+.-.|+++.|...++-+-.+.|++..-
T Consensus 17 L~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~ 71 (273)
T COG4455 17 LQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVG 71 (273)
T ss_pred HHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchH
Confidence 5788999999999999999999999999999999999999999999999988633
No 217
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.52 E-value=0.05 Score=29.83 Aligned_cols=52 Identities=23% Similarity=0.201 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q 038754 2 YHEAISCYERALTLLNRS----LSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD 53 (79)
Q Consensus 2 ~~~A~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 53 (79)
.++|+..+.+++++..+. +.++...|.+|..+|+.+.|...|+.+-++...+
T Consensus 93 ~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~F 148 (175)
T KOG4555|consen 93 DEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLGSKF 148 (175)
T ss_pred hHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCCHH
Confidence 578999999999998654 6788999999999999999999999887775544
No 218
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.48 E-value=0.038 Score=32.03 Aligned_cols=66 Identities=18% Similarity=0.149 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhh
Q 038754 2 YHEAISCYERALTLLNR--SLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEG 68 (79)
Q Consensus 2 ~~~A~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 68 (79)
+..|...+++..+-+|. +|+.+..+|.+|..+|.+.+|...|+.++...|+.. +...+...+..+|
T Consensus 140 ~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~-ar~~Y~e~La~qg 207 (251)
T COG4700 140 FAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQ-ARIYYAEMLAKQG 207 (251)
T ss_pred HHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHH-HHHHHHHHHHHhc
Confidence 34566667777777764 577777788888888888888888888888887654 2333444444444
No 219
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.45 E-value=0.094 Score=32.15 Aligned_cols=59 Identities=15% Similarity=0.010 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHH
Q 038754 3 HEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLS 61 (79)
Q Consensus 3 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 61 (79)
+.-+.++++|++.+|++...+..+-.+..+..+.+....-+++++..+|+++..|..+-
T Consensus 48 E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL 106 (321)
T PF08424_consen 48 ERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYL 106 (321)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999886555443
No 220
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=96.44 E-value=0.026 Score=37.65 Aligned_cols=48 Identities=13% Similarity=0.077 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHh
Q 038754 20 LSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDE 67 (79)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 67 (79)
...|..+...+...|+++.|...+++.+.+.|++...+..+.+.+...
T Consensus 494 ~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~ 541 (697)
T PLN03081 494 VNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSS 541 (697)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhC
Confidence 455666666666666777777777777777776654444444444433
No 221
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.41 E-value=0.035 Score=35.09 Aligned_cols=53 Identities=23% Similarity=0.170 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH
Q 038754 2 YHEAISCYERALTLLNRS-LSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQ 54 (79)
Q Consensus 2 ~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 54 (79)
|..|+..++-.+..+... ...-.-+|.|++++|+|++|...|.-+..-+..+.
T Consensus 38 ytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~ 91 (557)
T KOG3785|consen 38 YTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPA 91 (557)
T ss_pred chhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCc
Confidence 445555555544443321 12333356777777777777777777766443333
No 222
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.40 E-value=0.041 Score=35.82 Aligned_cols=47 Identities=21% Similarity=0.164 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC--CHHHHHHHHHHHHH
Q 038754 20 LSTYAGLAYTYHLQDNFSAAITYYHKALWLKPD--DQFCTEMLSLALVD 66 (79)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~ 66 (79)
..+...+|.|..++|+.++|++.++..++..|. +..++.++..++..
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLe 307 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLE 307 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHh
Confidence 456678999999999999999999999988774 33455555555544
No 223
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.39 E-value=0.058 Score=29.13 Aligned_cols=51 Identities=35% Similarity=0.539 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 038754 2 YHEAISCYERALTLLNR-SLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPD 52 (79)
Q Consensus 2 ~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 52 (79)
++.++..+.+++...+. ....+..++.++...+++..|+..+..++...|.
T Consensus 183 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 234 (291)
T COG0457 183 YEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD 234 (291)
T ss_pred HHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc
Confidence 45566666666666666 5666666666666666667777777777666665
No 224
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=96.36 E-value=0.061 Score=30.41 Aligned_cols=54 Identities=24% Similarity=0.261 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHH
Q 038754 3 HEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCT 57 (79)
Q Consensus 3 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 57 (79)
+..+.+.++.++..| ++..+.+++.++..+|+.++|.....++..+-|.+.+..
T Consensus 128 ~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~~~~~ 181 (193)
T PF11846_consen 128 EAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPADEFAA 181 (193)
T ss_pred HHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcHHHHH
Confidence 345566777777777 589999999999999999999999999999999555433
No 225
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.32 E-value=0.066 Score=36.94 Aligned_cols=50 Identities=22% Similarity=0.185 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 038754 3 HEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPD 52 (79)
Q Consensus 3 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 52 (79)
++|..+++..-...++|-..+-.+-.||..+++.++|..+|++++..+|+
T Consensus 60 ~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~ 109 (932)
T KOG2053|consen 60 DEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS 109 (932)
T ss_pred hhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc
Confidence 44555555444455555555666666666666666666666666666665
No 226
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.30 E-value=0.048 Score=34.61 Aligned_cols=62 Identities=15% Similarity=0.188 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHccCCCCHHHHHHHHHHH
Q 038754 3 HEAISCYERALTLLNRSLSTYAGLAYTYHLQDNF--SAAITYYHKALWLKPDDQFCTEMLSLAL 64 (79)
Q Consensus 3 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~A~~~~~~al~~~p~~~~~~~~l~~~~ 64 (79)
++-+.+...+++.+|++..+|+.+.+++.+.+.. ..-++..++++++||.+.-+|..-.-++
T Consensus 92 d~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~ 155 (421)
T KOG0529|consen 92 DEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVV 155 (421)
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHH
Confidence 4567788999999999999999999999877764 7788899999999999875554433333
No 227
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.24 E-value=0.075 Score=30.84 Aligned_cols=68 Identities=24% Similarity=0.362 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHh-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC--HHHHHHHHHHHHHhhh
Q 038754 2 YHEAISCYERALT-LLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD--QFCTEMLSLALVDEGR 69 (79)
Q Consensus 2 ~~~A~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~ 69 (79)
+.+|...|++++. +-.+++..+..++.+.+..+++..|...+++..+.+|.. |..+..++.++...|.
T Consensus 105 ~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~ 175 (251)
T COG4700 105 YHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGK 175 (251)
T ss_pred hhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCC
Confidence 4455555555543 233556666666666666666666666666666665532 2334444555544443
No 228
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=96.23 E-value=0.033 Score=36.73 Aligned_cols=67 Identities=27% Similarity=0.220 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhh
Q 038754 3 HEAISCYERALTLLNRSLSTYAGLAYTYHLQD---NFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGR 69 (79)
Q Consensus 3 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 69 (79)
..++..|.+++...|+...++.+.+.++.+.+ +.-.|+.....|++++|....++..+.+++...++
T Consensus 391 ~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r 460 (758)
T KOG1310|consen 391 SGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTR 460 (758)
T ss_pred HHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhh
Confidence 35667777777777877777777777776554 34447777777888888877777777777766554
No 229
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=96.21 E-value=0.011 Score=36.62 Aligned_cols=55 Identities=13% Similarity=0.107 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHccCCCCHHHH
Q 038754 3 HEAISCYERALTLLNRSLSTYAG-LAYTYHLQDNFSAAITYYHKALWLKPDDQFCT 57 (79)
Q Consensus 3 ~~A~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 57 (79)
.+--..|.++++.+|.+.+.|.. -+.=+...++++.+...|.++++.+|++|..|
T Consensus 124 ~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw 179 (435)
T COG5191 124 GEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIW 179 (435)
T ss_pred HHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHH
Confidence 34456788999999999999976 44447889999999999999999999999444
No 230
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=96.18 E-value=0.065 Score=35.82 Aligned_cols=48 Identities=13% Similarity=0.023 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 038754 2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWL 49 (79)
Q Consensus 2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 49 (79)
++.|...++++++++|++...|..++.+|.+.|++++|.+.++...+.
T Consensus 510 ~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 510 LELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred cHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 567888899999999999999999999999999999999999877654
No 231
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.18 E-value=0.088 Score=34.13 Aligned_cols=49 Identities=18% Similarity=0.260 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH
Q 038754 2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQ 54 (79)
Q Consensus 2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 54 (79)
|.++.-+..=..+..| ++.++..+|.|...+.+|.+|-.++ ..+.|++.
T Consensus 478 y~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l---~~LP~n~~ 526 (549)
T PF07079_consen 478 YHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYL---QKLPPNER 526 (549)
T ss_pred HHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHH---HhCCCchh
Confidence 4555556666778888 8999999999999999999999988 56667544
No 232
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.13 E-value=0.074 Score=36.72 Aligned_cols=69 Identities=16% Similarity=0.125 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhhc
Q 038754 2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGRH 70 (79)
Q Consensus 2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 70 (79)
+.+|+..+.+.++..|+.+.+.-.-|..+.++|+.++|..+++..-...++|-.....+..++.+.++.
T Consensus 25 fkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~ 93 (932)
T KOG2053|consen 25 FKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKL 93 (932)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhh
Confidence 678999999999999999999999999999999999999888777777888887777888888776653
No 233
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.10 E-value=0.087 Score=28.42 Aligned_cols=49 Identities=33% Similarity=0.334 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHccCC
Q 038754 3 HEAISCYERALTLLNRSLSTYAGLAY-TYHLQDNFSAAITYYHKALWLKP 51 (79)
Q Consensus 3 ~~A~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~A~~~~~~al~~~p 51 (79)
..++..+..++...+.+.......+. ++...|++..|+..|.+++..+|
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 161 (291)
T COG0457 112 EEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDP 161 (291)
T ss_pred HHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 44555555555555554444444444 55566666666666666655544
No 234
>PLN03077 Protein ECB2; Provisional
Probab=96.06 E-value=0.07 Score=36.47 Aligned_cols=44 Identities=11% Similarity=0.193 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 038754 2 YHEAISCYERALTLLN--RSLSTYAGLAYTYHLQDNFSAAITYYHK 45 (79)
Q Consensus 2 ~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 45 (79)
+++|..+|+.+.+..+ .+...|..+..++.+.|+.++|...+++
T Consensus 605 v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~ 650 (857)
T PLN03077 605 VTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINK 650 (857)
T ss_pred HHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 3455555555543221 1234455555555555555555554443
No 235
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=95.99 E-value=0.044 Score=23.99 Aligned_cols=26 Identities=15% Similarity=0.116 Sum_probs=23.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHc
Q 038754 23 YAGLAYTYHLQDNFSAAITYYHKALW 48 (79)
Q Consensus 23 ~~~~~~~~~~~~~~~~A~~~~~~al~ 48 (79)
.+.+|.+|..+|+.+.|...++.++.
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHH
Confidence 36789999999999999999999995
No 236
>PLN03218 maturation of RBCL 1; Provisional
Probab=95.94 E-value=0.18 Score=35.77 Aligned_cols=46 Identities=11% Similarity=0.126 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 038754 3 HEAISCYERALTLL-NRSLSTYAGLAYTYHLQDNFSAAITYYHKALW 48 (79)
Q Consensus 3 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 48 (79)
++|...|+++.+.+ +.++..|..+...|.+.|++++|+..|.+..+
T Consensus 596 deA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~ 642 (1060)
T PLN03218 596 DRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKK 642 (1060)
T ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34444444444433 22334444444444444444444444444443
No 237
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.93 E-value=0.073 Score=35.33 Aligned_cols=50 Identities=18% Similarity=0.119 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH
Q 038754 2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQ 54 (79)
Q Consensus 2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 54 (79)
.++|+.++. .+++.+..++...|.+++++|+|++|...|++.++.+-++.
T Consensus 95 ~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~ 144 (652)
T KOG2376|consen 95 LDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQ 144 (652)
T ss_pred HHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchH
Confidence 456666665 56677788999999999999999999999999999887665
No 238
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.78 E-value=0.12 Score=32.54 Aligned_cols=63 Identities=14% Similarity=0.073 Sum_probs=48.3
Q ss_pred HHHHHHHhh-CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhh
Q 038754 7 SCYERALTL-LNRS---LSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGR 69 (79)
Q Consensus 7 ~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 69 (79)
..+++++-. +++- ..++..++.++...|-+++|...-+++++++|.+.++.-...+++.-.++
T Consensus 158 ~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r 224 (491)
T KOG2610|consen 158 NAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGR 224 (491)
T ss_pred hHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcch
Confidence 344555544 4443 56777788889999999999999999999999999887777777765554
No 239
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.70 E-value=0.092 Score=33.86 Aligned_cols=50 Identities=26% Similarity=0.372 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 038754 2 YHEAISCYERALTLLNR----SLSTYAGLAYTYHLQDNFSAAITYYHKALWLKP 51 (79)
Q Consensus 2 ~~~A~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 51 (79)
.++|+..+++++..... ...+++.+|+++.-++++++|..+|.+.++.+.
T Consensus 283 ~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~ 336 (468)
T PF10300_consen 283 LEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK 336 (468)
T ss_pred HHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc
Confidence 44555555555432211 234555555555555555555555555555443
No 240
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=95.70 E-value=0.22 Score=29.83 Aligned_cols=54 Identities=19% Similarity=0.107 Sum_probs=43.1
Q ss_pred CHHHHHHHHHHHHhhCCC------C-HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH
Q 038754 1 IYHEAISCYERALTLLNR------S-LSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQ 54 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~------~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 54 (79)
+|++|+..|+++....-. + ...++..+.|+...||+..|...+++....+|++.
T Consensus 170 ~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~ 230 (282)
T PF14938_consen 170 RYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFA 230 (282)
T ss_dssp -HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTST
T ss_pred CHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Confidence 588999999999875422 1 24567788999999999999999999999999775
No 241
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.68 E-value=0.014 Score=36.27 Aligned_cols=51 Identities=24% Similarity=0.131 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 038754 2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPD 52 (79)
Q Consensus 2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 52 (79)
+..|+..|..++.++|++..-+-..|.+...+|++.+|...++.+++++=+
T Consensus 164 p~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 164 PNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLDYD 214 (377)
T ss_pred CchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHHhcccc
Confidence 457889999999999999999999999999999999999999999999743
No 242
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=95.64 E-value=0.11 Score=25.73 Aligned_cols=40 Identities=13% Similarity=0.301 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHH---HHHHcCCHHHHHHH
Q 038754 3 HEAISCYERALTLLNRSLSTYAGLAY---TYHLQDNFSAAITY 42 (79)
Q Consensus 3 ~~A~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~A~~~ 42 (79)
.+|+..++++++..++.+..+..+|. +|...|+|++++.+
T Consensus 23 ~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 23 QQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666665555444443333 34455555555544
No 243
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.63 E-value=0.07 Score=32.57 Aligned_cols=45 Identities=18% Similarity=0.048 Sum_probs=39.7
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 038754 1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHK 45 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 45 (79)
++.+|...+..++...|.+..+...++.||...|+++.|...+..
T Consensus 149 ~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~ 193 (304)
T COG3118 149 DFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAA 193 (304)
T ss_pred chhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHh
Confidence 467888999999999999999999999999999999887776654
No 244
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=95.51 E-value=0.047 Score=26.70 Aligned_cols=30 Identities=23% Similarity=0.319 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 038754 4 EAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALW 48 (79)
Q Consensus 4 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 48 (79)
.|+.+..++++.+ ..|++++|+.+|..++.
T Consensus 5 ~Ai~~a~~Ave~D---------------~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 5 DAVQFARLAVQRD---------------QEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HHHHHHHHHHHHH---------------HccCHHHHHHHHHHHHH
Confidence 5666666666665 56777777777776665
No 245
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.47 E-value=0.094 Score=32.55 Aligned_cols=48 Identities=15% Similarity=0.142 Sum_probs=41.8
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 038754 1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALW 48 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 48 (79)
.|+.|+.-|+.+++...-+|..-++++.++++.+++..|++.....+.
T Consensus 159 qyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIie 206 (459)
T KOG4340|consen 159 QYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIE 206 (459)
T ss_pred cHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 378899999999999999999999999999999999999887665554
No 246
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=95.46 E-value=0.16 Score=33.25 Aligned_cols=58 Identities=10% Similarity=0.114 Sum_probs=49.7
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHH
Q 038754 4 EAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLS 61 (79)
Q Consensus 4 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 61 (79)
.-+..|+.++..-+.|+..|..+.....+.+.+.+.-..|.+++..+|+++..|...+
T Consensus 89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA 146 (568)
T KOG2396|consen 89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAA 146 (568)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhh
Confidence 3456789999999999999999988888888899999999999999999996655443
No 247
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=95.45 E-value=0.16 Score=26.65 Aligned_cols=63 Identities=11% Similarity=0.043 Sum_probs=47.7
Q ss_pred CHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHcCC-----------HHHHHHHHHHHHccCCCCHHHHHHHHHH
Q 038754 1 IYHEAISCYERALTLLNRSL---STYAGLAYTYHLQDN-----------FSAAITYYHKALWLKPDDQFCTEMLSLA 63 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-----------~~~A~~~~~~al~~~p~~~~~~~~l~~~ 63 (79)
++-+|+++.+..+..++++. ..+..-|.++..+.. .-.++++|.++..+.|..+.....+++-
T Consensus 11 nhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~~la~~ 87 (111)
T PF04781_consen 11 NHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSLFELASQ 87 (111)
T ss_pred CHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHHHHHHHH
Confidence 46789999999999988765 677888888866554 3458999999999999886544444433
No 248
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=95.39 E-value=0.13 Score=25.14 Aligned_cols=36 Identities=25% Similarity=0.158 Sum_probs=21.3
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH-------HHHccCCCCH
Q 038754 4 EAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYH-------KALWLKPDDQ 54 (79)
Q Consensus 4 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~-------~al~~~p~~~ 54 (79)
.|..+..++++.+ +.|++.+|+.+|+ +++...|+++
T Consensus 5 ~A~~~a~~AVe~D---------------~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~ 47 (75)
T cd02682 5 MARKYAINAVKAE---------------KEGNAEDAITNYKKAIEVLSQIVKNYPDSP 47 (75)
T ss_pred HHHHHHHHHHHHH---------------hcCCHHHHHHHHHHHHHHHHHHHHhCCChH
Confidence 4555555555554 5556555555555 5555688887
No 249
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=95.33 E-value=0.062 Score=25.46 Aligned_cols=20 Identities=20% Similarity=0.335 Sum_probs=13.0
Q ss_pred HHHcCCHHHHHHHHHHHHcc
Q 038754 30 YHLQDNFSAAITYYHKALWL 49 (79)
Q Consensus 30 ~~~~~~~~~A~~~~~~al~~ 49 (79)
+-..|++++|+.+|.+++..
T Consensus 15 ~D~~g~~~~A~~~Y~~ai~~ 34 (69)
T PF04212_consen 15 ADEAGNYEEALELYKEAIEY 34 (69)
T ss_dssp HHHTTSHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH
Confidence 33567777777777766653
No 250
>PLN03218 maturation of RBCL 1; Provisional
Probab=95.25 E-value=0.51 Score=33.62 Aligned_cols=49 Identities=10% Similarity=-0.019 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHhhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 038754 2 YHEAISCYERALTLL---NRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLK 50 (79)
Q Consensus 2 ~~~A~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 50 (79)
+++|..++.++.... ..+...|..+-.+|.+.|++++|...|+...+.+
T Consensus 558 ~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~g 609 (1060)
T PLN03218 558 VDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYN 609 (1060)
T ss_pred HHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 445556665554421 1234555555566666666666666666666554
No 251
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.21 E-value=0.13 Score=32.48 Aligned_cols=54 Identities=20% Similarity=0.207 Sum_probs=42.7
Q ss_pred CHHHHHHHHHH-HHhhCCCCHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHccCCCCH
Q 038754 1 IYHEAISCYER-ALTLLNRSLSTYAGLAYTYHL---------QDNFSAAITYYHKALWLKPDDQ 54 (79)
Q Consensus 1 ~~~~A~~~~~~-~~~~~~~~~~~~~~~~~~~~~---------~~~~~~A~~~~~~al~~~p~~~ 54 (79)
+.++|+..+.. .....+.+++.+..+|.+|.. ....++|+.+|.+++.++|+..
T Consensus 197 dre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y 260 (374)
T PF13281_consen 197 DREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYY 260 (374)
T ss_pred CHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcccc
Confidence 35789999988 556667899999999999853 2236779999999999997553
No 252
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=95.21 E-value=0.099 Score=23.76 Aligned_cols=29 Identities=10% Similarity=0.013 Sum_probs=23.0
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 038754 1 IYHEAISCYERALTLLNRSLSTYAGLAYT 29 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 29 (79)
+|.+|..+++.+++.+|++..+......+
T Consensus 16 ~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 16 EYEKARRYCDALLEIEPDNRQAQSLKELI 44 (53)
T ss_dssp -HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 58899999999999999998887765444
No 253
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.17 E-value=0.21 Score=32.31 Aligned_cols=49 Identities=20% Similarity=0.092 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 038754 2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLK 50 (79)
Q Consensus 2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 50 (79)
.+.|..++....+.-|+++-.++..|..+...|+.++|+..|++++...
T Consensus 249 ~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q 297 (468)
T PF10300_consen 249 LEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQ 297 (468)
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccch
Confidence 4678889999999999999999999999999999999999999999543
No 254
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=95.11 E-value=0.075 Score=27.88 Aligned_cols=48 Identities=19% Similarity=0.268 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 038754 3 HEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLK 50 (79)
Q Consensus 3 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 50 (79)
.-|+.+|++++.+.|..+..++.+|.-+--...|+++..-.+++|.+.
T Consensus 61 l~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv~ 108 (111)
T PF04781_consen 61 LGSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSVT 108 (111)
T ss_pred HHhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence 357899999999999999999999988777777888888888888763
No 255
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.07 E-value=0.22 Score=32.78 Aligned_cols=54 Identities=20% Similarity=0.211 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHH
Q 038754 2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQF 55 (79)
Q Consensus 2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 55 (79)
+..|...|++++..+..+...|..++.+-.+..+...|...+++|+.+-|.--.
T Consensus 89 ~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdq 142 (677)
T KOG1915|consen 89 IQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQ 142 (677)
T ss_pred HHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHH
Confidence 567889999999999999999999999999999999999999999999986553
No 256
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=95.07 E-value=0.031 Score=34.82 Aligned_cols=57 Identities=21% Similarity=0.141 Sum_probs=46.6
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHH
Q 038754 9 YERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALV 65 (79)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 65 (79)
...+++.++....+++..+..+....++++|++++..+....|++......+..+..
T Consensus 298 ~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~ 354 (372)
T KOG0546|consen 298 TNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQ 354 (372)
T ss_pred cccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhh
Confidence 334555677788999999999999999999999999999999999866555544443
No 257
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=95.00 E-value=0.086 Score=25.76 Aligned_cols=33 Identities=24% Similarity=0.144 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 038754 2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWL 49 (79)
Q Consensus 2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 49 (79)
.++|+.++.++++.+ ..|++++|+.+|.++++.
T Consensus 3 l~kai~Lv~~A~~eD---------------~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 3 LERAHFLVTQAFDED---------------EKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HHHHHHHHHHHHHhh---------------HhhhHHHHHHHHHHHHHH
Confidence 456677777776555 568899999999888864
No 258
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=94.95 E-value=0.21 Score=34.99 Aligned_cols=52 Identities=17% Similarity=0.140 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH
Q 038754 2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQ 54 (79)
Q Consensus 2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 54 (79)
+.+|+.-|++. ...|.-|.-|...|.+|..+|++.+-+++|.-|++..|++|
T Consensus 535 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (932)
T PRK13184 535 FTQALSEFSYL-HGGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHP 586 (932)
T ss_pred HHHHHHHHHHh-cCCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCC
Confidence 56677777754 44566678888899999999999999999999999999998
No 259
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=94.93 E-value=0.18 Score=31.55 Aligned_cols=38 Identities=21% Similarity=0.233 Sum_probs=34.0
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 038754 11 RALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALW 48 (79)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 48 (79)
..++.+|-+.+++..++.++..+|++..|.+..++||-
T Consensus 31 ~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf 68 (360)
T PF04910_consen 31 NLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALF 68 (360)
T ss_pred HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44567799999999999999999999999999999974
No 260
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.91 E-value=0.23 Score=30.18 Aligned_cols=48 Identities=25% Similarity=0.213 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 038754 2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWL 49 (79)
Q Consensus 2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 49 (79)
++.++..+.+.+..+|.+-..|..+=..|.+.|+...|+..|++.-+.
T Consensus 169 ~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 169 ADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 567778888999999999899999989999999999999999887763
No 261
>PLN03077 Protein ECB2; Provisional
Probab=94.88 E-value=0.14 Score=35.07 Aligned_cols=45 Identities=9% Similarity=0.051 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHH
Q 038754 20 LSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLAL 64 (79)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 64 (79)
+..|..+-.++...++.+.+....+++++++|++...+..+...+
T Consensus 657 ~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~y 701 (857)
T PLN03077 657 PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLY 701 (857)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHH
Confidence 334444444444444444444444455555554444444443333
No 262
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=94.86 E-value=0.088 Score=20.37 Aligned_cols=27 Identities=30% Similarity=0.342 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 038754 2 YHEAISCYERALTLLNRSLSTYAGLAY 28 (79)
Q Consensus 2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~ 28 (79)
++.+...|+++++..|.++..|..++.
T Consensus 3 ~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 3 IERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred HHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 456677777777777777777766554
No 263
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=94.86 E-value=0.58 Score=29.77 Aligned_cols=65 Identities=15% Similarity=0.066 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH
Q 038754 2 YHEAISCYERALTLLNR-SLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVD 66 (79)
Q Consensus 2 ~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 66 (79)
++.+-.++.++-+..++ ........+......|++..|..-..+++...|.++.+......++..
T Consensus 134 ~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~ 199 (400)
T COG3071 134 EDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIR 199 (400)
T ss_pred HHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHH
Confidence 44555555666555332 344555566666666666666666666666666666555444444443
No 264
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.85 E-value=0.14 Score=34.08 Aligned_cols=47 Identities=15% Similarity=0.183 Sum_probs=40.1
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 038754 1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKAL 47 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 47 (79)
+|++|+....+++...|++..++..--.+..+.++|++|+...++-.
T Consensus 27 e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~ 73 (652)
T KOG2376|consen 27 EYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNG 73 (652)
T ss_pred HHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcc
Confidence 47889999999999999999999999999999999999986554444
No 265
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=94.82 E-value=0.037 Score=35.62 Aligned_cols=49 Identities=22% Similarity=0.228 Sum_probs=37.1
Q ss_pred CHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 038754 1 IYHEAISCYERALTLLNR------SLSTYAGLAYTYHLQDNFSAAITYYHKALWL 49 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 49 (79)
+|++|+...+.-+.+... .-.++.++|+|+.-.|+++.|++.|++++.+
T Consensus 210 df~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 210 DFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL 264 (639)
T ss_pred cHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence 466777776666665532 2468889999999999999999999887765
No 266
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=94.74 E-value=0.54 Score=28.89 Aligned_cols=58 Identities=10% Similarity=-0.046 Sum_probs=43.6
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHccCCCCHHHHHHHHHHH
Q 038754 7 SCYERALTLLNRSLSTYAGLAYTYHLQDN------------FSAAITYYHKALWLKPDDQFCTEMLSLAL 64 (79)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 64 (79)
.-+.+.++.+|+|..+|..+...--..-. .+.-+..|++||+-+|++...+..+-...
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~ 75 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEG 75 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 45788999999999999999876544432 34567889999999999886555544433
No 267
>PRK10941 hypothetical protein; Provisional
Probab=94.67 E-value=0.33 Score=29.29 Aligned_cols=47 Identities=13% Similarity=0.113 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHh
Q 038754 21 STYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDE 67 (79)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 67 (79)
..+.++=.+|...++++.|+.+.+..+.++|+++.-+.-.+-++...
T Consensus 182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL 228 (269)
T PRK10941 182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQL 228 (269)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 45677888899999999999999999999999995555455444443
No 268
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=94.60 E-value=0.11 Score=25.41 Aligned_cols=37 Identities=24% Similarity=0.289 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH-------HHHHccCCCCH
Q 038754 3 HEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYY-------HKALWLKPDDQ 54 (79)
Q Consensus 3 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~-------~~al~~~p~~~ 54 (79)
..|+.+..++++.+ ..|++.+|+.+| ..+++..|++.
T Consensus 4 ~~a~~l~~~Ave~D---------------~~g~y~eAl~~Y~~aie~l~~~lk~e~d~~ 47 (77)
T cd02683 4 LAAKEVLKRAVELD---------------QEGRFQEALVCYQEGIDLLMQVLKGTKDEA 47 (77)
T ss_pred HHHHHHHHHHHHHH---------------HhccHHHHHHHHHHHHHHHHHHHhhCCCHH
Confidence 45666666666655 445555555555 45555677654
No 269
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.56 E-value=0.14 Score=32.55 Aligned_cols=49 Identities=20% Similarity=0.211 Sum_probs=35.8
Q ss_pred CHHHHHHHHHHHHhhCCC----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 038754 1 IYHEAISCYERALTLLNR----------SLSTYAGLAYTYHLQDNFSAAITYYHKALWL 49 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 49 (79)
|+++|+.+..++.++... ...+++.++.++..+|+..+|+++.+.+.++
T Consensus 177 D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kl 235 (518)
T KOG1941|consen 177 DYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKL 235 (518)
T ss_pred hhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 456777777777665532 2456778888888888888888888888876
No 270
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=94.51 E-value=0.35 Score=30.24 Aligned_cols=41 Identities=17% Similarity=0.092 Sum_probs=33.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHH
Q 038754 25 GLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALV 65 (79)
Q Consensus 25 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 65 (79)
+.+.-..+.|+.+.|+..|++|+.++|+++.+...++.-..
T Consensus 121 ~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E 161 (472)
T KOG3824|consen 121 KAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFRE 161 (472)
T ss_pred HHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHH
Confidence 34445678999999999999999999999977766665443
No 271
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=94.50 E-value=0.15 Score=25.13 Aligned_cols=25 Identities=20% Similarity=0.102 Sum_probs=16.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHcc
Q 038754 25 GLAYTYHLQDNFSAAITYYHKALWL 49 (79)
Q Consensus 25 ~~~~~~~~~~~~~~A~~~~~~al~~ 49 (79)
+.|..+-..|+.++|+.+|++++..
T Consensus 13 ~kaL~~dE~g~~e~Al~~Y~~gi~~ 37 (79)
T cd02679 13 SKALRADEWGDKEQALAHYRKGLRE 37 (79)
T ss_pred HHHhhhhhcCCHHHHHHHHHHHHHH
Confidence 3344444567777777777777753
No 272
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.48 E-value=0.64 Score=28.57 Aligned_cols=60 Identities=17% Similarity=-0.011 Sum_probs=45.8
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC--HHHHHHHHHHHHHh
Q 038754 8 CYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD--QFCTEMLSLALVDE 67 (79)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~ 67 (79)
.+.+.+..+|++..+-+.+|..+...|+.+.|...+-..++.|-+. ..++..+-..+.-.
T Consensus 224 ~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~ 285 (304)
T COG3118 224 DLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAF 285 (304)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhc
Confidence 4566778899999999999999999999999999988888775432 34455555444433
No 273
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=94.46 E-value=0.2 Score=32.89 Aligned_cols=50 Identities=12% Similarity=0.101 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 038754 2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKP 51 (79)
Q Consensus 2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 51 (79)
++....+|.+-++-+|.++.+|..+|..-..+|+.+.|...|+-|+....
T Consensus 453 fDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ 502 (677)
T KOG1915|consen 453 FDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPA 502 (677)
T ss_pred HHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcc
Confidence 56677888999999999999999999999999999999999998887654
No 274
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=94.32 E-value=0.67 Score=28.17 Aligned_cols=65 Identities=11% Similarity=0.020 Sum_probs=50.0
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC----------------------HHHHHHHHHHHHccCCCCHHHHHHHHH
Q 038754 5 AISCYERALTLLNRSLSTYAGLAYTYHLQDN----------------------FSAAITYYHKALWLKPDDQFCTEMLSL 62 (79)
Q Consensus 5 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~A~~~~~~al~~~p~~~~~~~~l~~ 62 (79)
....++.=++..|++..++..+|..+....- .+.|...+.+++.++|+...+...+..
T Consensus 62 ~~~~LkaWv~a~P~Sy~A~La~g~~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~~ 141 (277)
T PF13226_consen 62 RLAVLKAWVAACPKSYHAHLAMGMYWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMIN 141 (277)
T ss_pred HHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHH
Confidence 4455666677889999999999988775433 556888999999999999988877776
Q ss_pred HHHHhhh
Q 038754 63 ALVDEGR 69 (79)
Q Consensus 63 ~~~~~~~ 69 (79)
+....|+
T Consensus 142 ~s~~fge 148 (277)
T PF13226_consen 142 ISAYFGE 148 (277)
T ss_pred HHhhcCC
Confidence 6655544
No 275
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=94.26 E-value=0.35 Score=29.88 Aligned_cols=49 Identities=22% Similarity=0.178 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhh
Q 038754 21 STYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGR 69 (79)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 69 (79)
..++..+..|...|.+.+|+.+.++++.++|=+...+..+...+...|+
T Consensus 280 kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD 328 (361)
T COG3947 280 KLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGD 328 (361)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhcc
Confidence 4555667778999999999999999999999887777777777776665
No 276
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=94.25 E-value=0.31 Score=24.09 Aligned_cols=45 Identities=16% Similarity=0.055 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH
Q 038754 22 TYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVD 66 (79)
Q Consensus 22 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 66 (79)
.....|.-++..++..+|+..++++++..++.+..+..++.+...
T Consensus 8 ~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA 52 (80)
T PF10579_consen 8 QQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQA 52 (80)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHH
Confidence 345567777899999999999999999998887666555555443
No 277
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=94.15 E-value=0.88 Score=28.85 Aligned_cols=54 Identities=9% Similarity=-0.095 Sum_probs=44.8
Q ss_pred CCCHHHHHHHHHHHHH---cCCHHHHHHHHHH-HHccCCCCHHHHHHHHHHHHHhhhc
Q 038754 17 NRSLSTYAGLAYTYHL---QDNFSAAITYYHK-ALWLKPDDQFCTEMLSLALVDEGRH 70 (79)
Q Consensus 17 ~~~~~~~~~~~~~~~~---~~~~~~A~~~~~~-al~~~p~~~~~~~~l~~~~~~~~~~ 70 (79)
++.+...+.+|.++.+ .|+.++|+..+.. .....+.++..+..++.++++.-..
T Consensus 176 ~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~ 233 (374)
T PF13281_consen 176 ANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLE 233 (374)
T ss_pred hcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHH
Confidence 4567888899999999 9999999999999 5566778888888899998887443
No 278
>PF12854 PPR_1: PPR repeat
Probab=94.13 E-value=0.17 Score=20.56 Aligned_cols=28 Identities=18% Similarity=0.285 Sum_probs=24.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 038754 18 RSLSTYAGLAYTYHLQDNFSAAITYYHK 45 (79)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 45 (79)
.+...|..+-..|-+.|+.++|++.+++
T Consensus 5 Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 5 PDVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 3567888889999999999999998864
No 279
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=94.09 E-value=0.12 Score=34.30 Aligned_cols=52 Identities=17% Similarity=0.017 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH
Q 038754 3 HEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQ 54 (79)
Q Consensus 3 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 54 (79)
-.|+..+..+++++|....+|+.++.++..++++.+|+.+-..+.-..|.+.
T Consensus 428 ~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd~ 479 (758)
T KOG1310|consen 428 YLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHWALQMSFPTDV 479 (758)
T ss_pred HHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchhh
Confidence 3578888999999999999999999999999999999998877777777554
No 280
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.04 E-value=0.65 Score=26.98 Aligned_cols=33 Identities=15% Similarity=-0.037 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH
Q 038754 22 TYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQ 54 (79)
Q Consensus 22 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 54 (79)
.--..|.++...|+..+|...|++++..+++++
T Consensus 161 ~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 161 VAELRGDILLAKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred HHHHhhhHHHHcCchHHHHHHHHHHHHccCChH
Confidence 356689999999999999999999999985544
No 281
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.03 E-value=0.53 Score=25.91 Aligned_cols=45 Identities=13% Similarity=-0.037 Sum_probs=31.8
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 038754 6 ISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLK 50 (79)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 50 (79)
...+....+.+..+|..+..+|.+|.+.|+.+++-..+.+|.+..
T Consensus 106 dki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 106 DKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 344555555566789999999999999999999999999987654
No 282
>PRK04841 transcriptional regulator MalT; Provisional
Probab=94.02 E-value=0.24 Score=33.92 Aligned_cols=53 Identities=21% Similarity=0.011 Sum_probs=43.0
Q ss_pred CHHHHHHHHHHHHhhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q 038754 1 IYHEAISCYERALTLLN------RSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD 53 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 53 (79)
++++|+..+++++.... ....++..+|.++...|+.++|...+.+++.+....
T Consensus 706 ~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~ 764 (903)
T PRK04841 706 QFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRT 764 (903)
T ss_pred CHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCcc
Confidence 36788888888887632 234678899999999999999999999999986543
No 283
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=94.02 E-value=0.37 Score=35.31 Aligned_cols=51 Identities=20% Similarity=0.080 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 038754 2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPD 52 (79)
Q Consensus 2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 52 (79)
+++|.++++..++.-...+..|..+|..++.+++-+.|...+.+||+.-|.
T Consensus 1546 ~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk 1596 (1710)
T KOG1070|consen 1546 NDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPK 1596 (1710)
T ss_pred chhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch
Confidence 567888888888888788889999999988888888888889999988887
No 284
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=93.96 E-value=0.16 Score=19.59 Aligned_cols=29 Identities=17% Similarity=0.028 Sum_probs=24.0
Q ss_pred CCHHHHHHHHHHHHccCCCCHHHHHHHHH
Q 038754 34 DNFSAAITYYHKALWLKPDDQFCTEMLSL 62 (79)
Q Consensus 34 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 62 (79)
|+.+.+...|++++...|.++..+..+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 56788999999999999988877766554
No 285
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.79 E-value=0.41 Score=29.00 Aligned_cols=51 Identities=24% Similarity=0.124 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH-----------------HHHHHHHHHHHccCCC
Q 038754 2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNF-----------------SAAITYYHKALWLKPD 52 (79)
Q Consensus 2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~A~~~~~~al~~~p~ 52 (79)
+++++..|..+++.+|....+|+.+|..+...=+. ..|+..|-+++.+.|+
T Consensus 274 ~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 274 SDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 45667777777777777777777777766543111 2367777777777766
No 286
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=93.69 E-value=0.37 Score=27.94 Aligned_cols=51 Identities=18% Similarity=0.076 Sum_probs=38.8
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC----HHHHHHHHHHHHHhhh
Q 038754 18 RSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD----QFCTEMLSLALVDEGR 69 (79)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~~~ 69 (79)
+++...+.+|..|. .-+...++..+.++|.+.+.+ +.+...++.+....++
T Consensus 139 ~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~ 193 (203)
T PF11207_consen 139 ETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN 193 (203)
T ss_pred CCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc
Confidence 57899999987765 778999999999999986644 4666666666665544
No 287
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=93.63 E-value=0.45 Score=29.61 Aligned_cols=43 Identities=26% Similarity=0.172 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 038754 3 HEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHK 45 (79)
Q Consensus 3 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 45 (79)
-+|+.+++.+++.+|.++.....+..+|..+|-...|...|..
T Consensus 200 ~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~ 242 (365)
T PF09797_consen 200 LQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYES 242 (365)
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 4688889999999999999999999999999999999998843
No 288
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=93.50 E-value=0.29 Score=23.63 Aligned_cols=31 Identities=26% Similarity=0.338 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 038754 3 HEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALW 48 (79)
Q Consensus 3 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 48 (79)
++|+.++.++++.+ ..|++++|+.+|.+++.
T Consensus 4 ~~A~~l~~~Av~~D---------------~~g~y~eA~~~Y~~aie 34 (75)
T cd02678 4 QKAIELVKKAIEED---------------NAGNYEEALRLYQHALE 34 (75)
T ss_pred HHHHHHHHHHHHHH---------------HcCCHHHHHHHHHHHHH
Confidence 45566666665544 55666666666655554
No 289
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.46 E-value=0.31 Score=30.80 Aligned_cols=45 Identities=16% Similarity=0.136 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 038754 2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKA 46 (79)
Q Consensus 2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 46 (79)
|++|....++++++++.++=+....+.++...+++.++.++..+.
T Consensus 191 y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 191 YDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred chhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 678999999999999999888888999998999988888776554
No 290
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.46 E-value=0.46 Score=29.12 Aligned_cols=56 Identities=14% Similarity=0.259 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHH
Q 038754 2 YHEAISCYERALTLL------NRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCT 57 (79)
Q Consensus 2 ~~~A~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 57 (79)
.+.|..+|+.+-+.. ...-.++.+.+.+|.-.+++.+|-..|.+.+..||+++.+-
T Consensus 228 ~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~ 289 (366)
T KOG2796|consen 228 IKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVAN 289 (366)
T ss_pred HHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhh
Confidence 345556666333222 23567888899999999999999999999999999998443
No 291
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=93.34 E-value=0.3 Score=23.71 Aligned_cols=32 Identities=25% Similarity=0.259 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 038754 2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALW 48 (79)
Q Consensus 2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 48 (79)
..+|+.+..++++.+ ..|++++|+.+|..++.
T Consensus 3 l~~Ai~lv~~Av~~D---------------~~g~y~eA~~lY~~ale 34 (75)
T cd02684 3 LEKAIALVVQAVKKD---------------QRGDAAAALSLYCSALQ 34 (75)
T ss_pred HHHHHHHHHHHHHHH---------------HhccHHHHHHHHHHHHH
Confidence 356666677766555 44666666666665554
No 292
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.28 E-value=0.81 Score=27.47 Aligned_cols=49 Identities=14% Similarity=0.188 Sum_probs=40.1
Q ss_pred CHHHHHHHHHHHHhhC-CCC-------HHHHHHHHHHHHHcC-CHHHHHHHHHHHHcc
Q 038754 1 IYHEAISCYERALTLL-NRS-------LSTYAGLAYTYHLQD-NFSAAITYYHKALWL 49 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~-~~~-------~~~~~~~~~~~~~~~-~~~~A~~~~~~al~~ 49 (79)
+++.|..++.++-... ..+ +..+++.|......+ +++.|..++++++.+
T Consensus 8 ~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~ 65 (278)
T PF08631_consen 8 DLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDI 65 (278)
T ss_pred CHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 4667888888877655 222 468899999999999 999999999999988
No 293
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.25 E-value=0.68 Score=26.10 Aligned_cols=33 Identities=18% Similarity=0.139 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 038754 20 LSTYAGLAYTYHLQDNFSAAITYYHKALWLKPD 52 (79)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 52 (79)
..++..+|..|.+.|+.+.|+++|.++.....+
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~ 68 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTS 68 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCC
Confidence 468889999999999999999999998876433
No 294
>PRK04841 transcriptional regulator MalT; Provisional
Probab=93.16 E-value=1.1 Score=30.84 Aligned_cols=50 Identities=18% Similarity=0.095 Sum_probs=38.8
Q ss_pred CHHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 038754 1 IYHEAISCYERALTLLNRS-----LSTYAGLAYTYHLQDNFSAAITYYHKALWLK 50 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 50 (79)
++++|...++++++..+.. ..++..+|.++...|++++|...+++++...
T Consensus 467 ~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~ 521 (903)
T PRK04841 467 DPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMA 521 (903)
T ss_pred CHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 4678888888888754432 2456778888999999999999999998763
No 295
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=93.09 E-value=1 Score=29.42 Aligned_cols=71 Identities=15% Similarity=0.206 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHhhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc-----CCC-CHHHHHHHHHHHHHhhh
Q 038754 2 YHEAISCYERALTLLN------RSLSTYAGLAYTYHLQDNFSAAITYYHKALWL-----KPD-DQFCTEMLSLALVDEGR 69 (79)
Q Consensus 2 ~~~A~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~-~~~~~~~l~~~~~~~~~ 69 (79)
+++|+.++.+-+.+.. ....+++.+|.+|...|..+.|+.+.++.+++ ||. -..++.++.+.....|.
T Consensus 291 ~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~ 370 (639)
T KOG1130|consen 291 VQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILELGQ 370 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHhCC
Confidence 5677887777666542 35678888999999999999999988888876 332 23567777777777766
Q ss_pred cCC
Q 038754 70 HGI 72 (79)
Q Consensus 70 ~~~ 72 (79)
...
T Consensus 371 ~ds 373 (639)
T KOG1130|consen 371 EDS 373 (639)
T ss_pred Ccc
Confidence 544
No 296
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=92.99 E-value=0.71 Score=28.96 Aligned_cols=45 Identities=13% Similarity=0.138 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC-CHHHHHHHHHHH
Q 038754 20 LSTYAGLAYTYHLQDNFSAAITYYHKALWLKPD-DQFCTEMLSLAL 64 (79)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~ 64 (79)
..+++.....+.+.|.++.|+++.+-.+.+||. ||.....+.+.+
T Consensus 103 flal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ 148 (360)
T PF04910_consen 103 FLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYY 148 (360)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHH
Confidence 346677777888999999999999999999998 885554444443
No 297
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=92.97 E-value=0.4 Score=23.05 Aligned_cols=19 Identities=21% Similarity=0.359 Sum_probs=10.4
Q ss_pred HHHcCCHHHHHHHHHHHHc
Q 038754 30 YHLQDNFSAAITYYHKALW 48 (79)
Q Consensus 30 ~~~~~~~~~A~~~~~~al~ 48 (79)
+-..|++++|+.+|..++.
T Consensus 18 ~d~~g~~~eAl~~Y~~a~e 36 (77)
T smart00745 18 ADEAGDYEEALELYKKAIE 36 (77)
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 3345666666655555543
No 298
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=92.77 E-value=0.34 Score=23.60 Aligned_cols=31 Identities=19% Similarity=0.257 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 038754 3 HEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALW 48 (79)
Q Consensus 3 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 48 (79)
.+|...+.++++.+ ..|++++|..+|..++.
T Consensus 4 ~~A~~l~~~Ave~d---------------~~~~y~eA~~~Y~~~i~ 34 (75)
T cd02677 4 EQAAELIRLALEKE---------------EEGDYEAAFEFYRAGVD 34 (75)
T ss_pred HHHHHHHHHHHHHH---------------HHhhHHHHHHHHHHHHH
Confidence 56777777776665 33666666666655554
No 299
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=92.42 E-value=0.31 Score=18.58 Aligned_cols=27 Identities=22% Similarity=0.316 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 038754 22 TYAGLAYTYHLQDNFSAAITYYHKALW 48 (79)
Q Consensus 22 ~~~~~~~~~~~~~~~~~A~~~~~~al~ 48 (79)
.|..+-.+|.+.|++++|...|++-.+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhH
Confidence 356677889999999999999987654
No 300
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=92.33 E-value=1.1 Score=26.91 Aligned_cols=40 Identities=18% Similarity=0.167 Sum_probs=35.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHH
Q 038754 18 RSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCT 57 (79)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 57 (79)
..+..|++-|......|++.+|+..|+.+....|..+...
T Consensus 32 ~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~ 71 (254)
T COG4105 32 LPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSE 71 (254)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccH
Confidence 3678999999999999999999999999999999888443
No 301
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=92.31 E-value=1.6 Score=26.70 Aligned_cols=66 Identities=11% Similarity=0.064 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhh
Q 038754 3 HEAISCYERALTLLNRSLSTYAGLAYTYHLQD-NFSAAITYYHKALWLKPDDQFCTEMLSLALVDEG 68 (79)
Q Consensus 3 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 68 (79)
+.|+.....++.++|.+..+|...-.++..++ +..+-+.++...+.-+|.|...|-.......-.+
T Consensus 60 ~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~ 126 (318)
T KOG0530|consen 60 PRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLG 126 (318)
T ss_pred HHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhc
Confidence 45777777777777777777776666664443 4556677777777777777766655555555444
No 302
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.19 E-value=1.7 Score=26.55 Aligned_cols=51 Identities=22% Similarity=0.141 Sum_probs=43.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhh
Q 038754 19 SLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGR 69 (79)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 69 (79)
...++..++..+...|+++.++..+++.+.++|-+...+..+-.++...|.
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~ 202 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGR 202 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCC
Confidence 467888899999999999999999999999999998777776666655544
No 303
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=92.13 E-value=0.39 Score=19.09 Aligned_cols=30 Identities=27% Similarity=0.396 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHc----CCHHHHHHHHHHHHccC
Q 038754 21 STYAGLAYTYHLQ----DNFSAAITYYHKALWLK 50 (79)
Q Consensus 21 ~~~~~~~~~~~~~----~~~~~A~~~~~~al~~~ 50 (79)
.+.+.+|.+|..- .+...|+.+|+++.+..
T Consensus 2 ~a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~~g 35 (36)
T smart00671 2 EAQYNLGQMYEYGLGVKKDLEKALEYYKKAAELG 35 (36)
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHcc
Confidence 4667788887532 37888999999887643
No 304
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=91.83 E-value=0.73 Score=22.08 Aligned_cols=17 Identities=29% Similarity=0.456 Sum_probs=10.0
Q ss_pred HcCCHHHHHHHHHHHHc
Q 038754 32 LQDNFSAAITYYHKALW 48 (79)
Q Consensus 32 ~~~~~~~A~~~~~~al~ 48 (79)
..|++++|+.+|..++.
T Consensus 18 ~~g~~~~Al~~Y~~a~e 34 (75)
T cd02656 18 EDGNYEEALELYKEALD 34 (75)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 44666666666655554
No 305
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=91.76 E-value=1.4 Score=29.18 Aligned_cols=46 Identities=15% Similarity=0.134 Sum_probs=39.7
Q ss_pred CHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 038754 1 IYHEAISCYERALTLLNR--SLSTYAGLAYTYHLQDNFSAAITYYHKA 46 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~a 46 (79)
+.++|++.++..++..|. .-.++.++-.++...+.|.++...+.+=
T Consensus 274 r~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 274 RLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred ChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 357899999999998875 5679999999999999999998887663
No 306
>PF14852 Fis1_TPR_N: Fis1 N-terminal tetratricopeptide repeat; PDB: 1IYG_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A 1PC2_A 1NZN_A.
Probab=91.50 E-value=0.54 Score=19.47 Aligned_cols=32 Identities=16% Similarity=0.106 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHcCCHH---HHHHHHHHHHccCC
Q 038754 20 LSTYAGLAYTYHLQDNFS---AAITYYHKALWLKP 51 (79)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~---~A~~~~~~al~~~p 51 (79)
+.+.+++|+++.+..... +.+..++..++.+|
T Consensus 1 ~qt~FnyAw~Lv~S~~~~d~~~Gi~lLe~l~~~~p 35 (35)
T PF14852_consen 1 PQTQFNYAWGLVKSNNREDQQEGIALLEELYRDEP 35 (35)
T ss_dssp -HHHHHHHHHHHHSSSHHHHHHHHHHHHHHCCCS-
T ss_pred CcchhHHHHHHhcCCCHHHHHHHHHHHHHHHhccC
Confidence 356788999998888764 47778877776654
No 307
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=91.44 E-value=0.52 Score=19.12 Aligned_cols=31 Identities=23% Similarity=0.326 Sum_probs=20.9
Q ss_pred HHHHHHHH--HHHHHcC-----CHHHHHHHHHHHHccC
Q 038754 20 LSTYAGLA--YTYHLQD-----NFSAAITYYHKALWLK 50 (79)
Q Consensus 20 ~~~~~~~~--~~~~~~~-----~~~~A~~~~~~al~~~ 50 (79)
+.+.+.+| .+|..-. ++..|+.+|+++.+.+
T Consensus 1 a~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~~g 38 (39)
T PF08238_consen 1 AEAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAEQG 38 (39)
T ss_dssp HHHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHhhhhccCCccccccchHHHHHHHHHcc
Confidence 45677788 5444333 3788999999887653
No 308
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.42 E-value=0.89 Score=23.73 Aligned_cols=43 Identities=16% Similarity=0.140 Sum_probs=36.6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHH
Q 038754 18 RSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEML 60 (79)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 60 (79)
--|..+-.+|..|...|+.+.|++.|+.--.+-|.....+..+
T Consensus 70 vpPG~HAhLGlLys~~G~~e~a~~eFetEKalFPES~~fmDFL 112 (121)
T COG4259 70 VPPGYHAHLGLLYSNSGKDEQAVREFETEKALFPESGVFMDFL 112 (121)
T ss_pred CCCcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccchhHHHHH
Confidence 3578889999999999999999999999999999887555443
No 309
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=91.37 E-value=1.9 Score=29.36 Aligned_cols=62 Identities=13% Similarity=0.092 Sum_probs=48.3
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH--HHHHHHHHHHHHhhh
Q 038754 8 CYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQ--FCTEMLSLALVDEGR 69 (79)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~l~~~~~~~~~ 69 (79)
.....++.+|.++..+...+......|+..+|+.|+..++-..|.+. .+...++.++.+.|.
T Consensus 201 ~~~~glq~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~ 264 (886)
T KOG4507|consen 201 LIHEGLQKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGF 264 (886)
T ss_pred HHHHhhhcCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHccc
Confidence 45667778888888887776666889999999999999999988765 445556777766654
No 310
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=91.34 E-value=1 Score=24.00 Aligned_cols=40 Identities=15% Similarity=0.142 Sum_probs=31.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHH
Q 038754 24 AGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLA 63 (79)
Q Consensus 24 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 63 (79)
..+|..+...|++.+|..+|-+|+..-|++.....-+...
T Consensus 67 V~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~~LL~i~q~t 106 (121)
T PF02064_consen 67 VQLGEQLLAQGDYEEAAEHFYNALKVCPQPAELLQIYQKT 106 (121)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTSSSHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHhh
Confidence 4578889999999999999999999999877555444443
No 311
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=91.31 E-value=1.4 Score=23.85 Aligned_cols=48 Identities=19% Similarity=0.230 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHhhCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 038754 2 YHEAISCYERALTLLNR------------SLSTYAGLAYTYHLQDNFSAAITYYHKALWL 49 (79)
Q Consensus 2 ~~~A~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 49 (79)
|++|..-|+++++.... +..++-.++.++..+|+|++++..-.++|..
T Consensus 25 ~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~Y 84 (144)
T PF12968_consen 25 YEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRY 84 (144)
T ss_dssp HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 67788888888887643 3568888899999999999988888877753
No 312
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=91.29 E-value=2.1 Score=28.02 Aligned_cols=33 Identities=18% Similarity=0.151 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH
Q 038754 22 TYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQ 54 (79)
Q Consensus 22 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 54 (79)
.-..+..||.++++++.|+....+++-++|..+
T Consensus 230 Ietklv~CYL~~rkpdlALnh~hrsI~lnP~~f 262 (569)
T PF15015_consen 230 IETKLVTCYLRMRKPDLALNHSHRSINLNPSYF 262 (569)
T ss_pred HHHHHHHhhhhcCCCchHHHHHhhhhhcCcchh
Confidence 456788999999999999999999999999887
No 313
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.03 E-value=2.2 Score=26.51 Aligned_cols=48 Identities=17% Similarity=0.263 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 038754 2 YHEAISCYERALTLLNRS----LSTYAGLAYTYHLQDNFSAAITYYHKALWL 49 (79)
Q Consensus 2 ~~~A~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 49 (79)
.++|+.-|++++++.+.. ..++-.+-.++++++++.+.+..|.+.+..
T Consensus 43 p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTY 94 (440)
T KOG1464|consen 43 PKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTY 94 (440)
T ss_pred HHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 578999999999999864 246666777889999999999999888754
No 314
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=90.87 E-value=2.2 Score=25.40 Aligned_cols=63 Identities=22% Similarity=0.232 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHccCCCC-HHHHHHHHHHHHH
Q 038754 2 YHEAISCYERALTLLNRSLSTYAGLAYTYHL----QDNFSAAITYYHKALWLKPDD-QFCTEMLSLALVD 66 (79)
Q Consensus 2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~ 66 (79)
..+|..+|+.+ .+..++.+.+++|..|.. ..+..+|..+|+++....... ..+...++..+..
T Consensus 93 ~~~A~~~~~~~--a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~ 160 (292)
T COG0790 93 KTKAADWYRCA--AADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLS 160 (292)
T ss_pred HHHHHHHHHHH--hhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHc
Confidence 46788888844 445678899999999876 448999999999999886544 2334455554443
No 315
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=90.87 E-value=2.5 Score=25.96 Aligned_cols=66 Identities=6% Similarity=-0.043 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHccCCCCHHHHHHHHHHHHHhh
Q 038754 3 HEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFS-AAITYYHKALWLKPDDQFCTEMLSLALVDEG 68 (79)
Q Consensus 3 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 68 (79)
.+=+.++.++++-+|++..+|...-.+....|++. .-+...+..+..+..|.-+|....-++...+
T Consensus 95 ~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~ 161 (318)
T KOG0530|consen 95 NKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFK 161 (318)
T ss_pred HHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHh
Confidence 45577888999999999999999999989999888 7888899999999888877877777766554
No 316
>PF13041 PPR_2: PPR repeat family
Probab=90.76 E-value=0.78 Score=19.94 Aligned_cols=32 Identities=19% Similarity=0.265 Sum_probs=27.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 038754 19 SLSTYAGLAYTYHLQDNFSAAITYYHKALWLK 50 (79)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 50 (79)
+...|..+-..|.+.|++++|.+.|++-.+..
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g 33 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKRG 33 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC
Confidence 35677788888999999999999999988653
No 317
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=90.70 E-value=1.6 Score=23.59 Aligned_cols=47 Identities=13% Similarity=0.015 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHhhCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 038754 3 HEAISCYERALTLLNRSLS----TYAGLAYTYHLQDNFSAAITYYHKALWL 49 (79)
Q Consensus 3 ~~A~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~A~~~~~~al~~ 49 (79)
+.|+.+|.+-=+++.+... +-++.|.++..+|+.++|+..|+.+-+.
T Consensus 79 ~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 79 DRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 4567777777778877654 4467888999999999999999988653
No 318
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.69 E-value=1.9 Score=24.21 Aligned_cols=50 Identities=12% Similarity=-0.149 Sum_probs=40.9
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 038754 1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKP 51 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 51 (79)
+|.+|+..++.+.+..|..+.+--.++.|++.++++.-=.. -..++...+
T Consensus 59 ~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~Wr~~-A~evle~~~ 108 (160)
T PF09613_consen 59 DWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSWRRY-ADEVLESGA 108 (160)
T ss_pred CHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHHHHH-HHHHHhcCC
Confidence 58899999999999999999999999999999999876432 344555554
No 319
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=90.58 E-value=3.1 Score=27.04 Aligned_cols=53 Identities=13% Similarity=-0.033 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH
Q 038754 2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQ 54 (79)
Q Consensus 2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 54 (79)
...|.....+++++.|+...+-..-+..+++.|+..++-..++.+.+..|-..
T Consensus 245 p~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ 297 (531)
T COG3898 245 PASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD 297 (531)
T ss_pred hHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH
Confidence 45677888899999999988888899999999999999999999999998554
No 320
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=90.57 E-value=1.1 Score=28.04 Aligned_cols=39 Identities=21% Similarity=0.170 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHH
Q 038754 20 LSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTE 58 (79)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 58 (79)
+.+++.-|...-+.|..-+|+..|+.|+++.|+-.....
T Consensus 19 A~~l~~~av~~Eq~G~l~dai~fYR~AlqI~~diEs~~r 57 (366)
T KOG2997|consen 19 AIALYEKAVLKEQDGSLYDAINFYRDALQIVPDIESKYR 57 (366)
T ss_pred HHHHHHHHHHHhhcCcHHHHHHHHHhhhcCCchHHHHHH
Confidence 445566666667889999999999999999997665544
No 321
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=90.50 E-value=1.2 Score=27.65 Aligned_cols=44 Identities=32% Similarity=0.252 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 038754 2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHK 45 (79)
Q Consensus 2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 45 (79)
+.+|..+.+++++++|-+-..+..+-..+...|+--.++..|++
T Consensus 295 ~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyer 338 (361)
T COG3947 295 PNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYER 338 (361)
T ss_pred hHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHH
Confidence 67899999999999999999999999999999998888777654
No 322
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=90.42 E-value=2.5 Score=25.20 Aligned_cols=46 Identities=22% Similarity=0.226 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHccCC
Q 038754 4 EAISCYERALTLLNRSLSTYAGLAYTYHL----QDNFSAAITYYHKALWLKP 51 (79)
Q Consensus 4 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p 51 (79)
.|+.+|.++-... ++.+.+.+|.+|.. ..++.+|..+|.++-....
T Consensus 173 ~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 173 KALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred hHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC
Confidence 4555555554444 45555555555533 3355556666655555544
No 323
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=90.17 E-value=0.77 Score=29.42 Aligned_cols=48 Identities=21% Similarity=0.310 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHhhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 038754 3 HEAISCYERALTLL------NRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLK 50 (79)
Q Consensus 3 ~~A~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 50 (79)
.+|.++++++.++. +-.......+|.+|...|+.+.|..-|+.|...-
T Consensus 223 gdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m 276 (518)
T KOG1941|consen 223 GDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTM 276 (518)
T ss_pred ccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHH
Confidence 46788888887764 2356788899999999999999999999998764
No 324
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=90.07 E-value=0.35 Score=30.88 Aligned_cols=31 Identities=23% Similarity=0.441 Sum_probs=27.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 038754 18 RSLSTYAGLAYTYHLQDNFSAAITYYHKALW 48 (79)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 48 (79)
.+...++..|.+|..+++|.+|++.|...+.
T Consensus 162 ~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 162 CHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred hheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567899999999999999999999998875
No 325
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=89.94 E-value=0.85 Score=29.13 Aligned_cols=46 Identities=17% Similarity=0.128 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHcc
Q 038754 2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDN------------FSAAITYYHKALWL 49 (79)
Q Consensus 2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~A~~~~~~al~~ 49 (79)
+..|+.+++++.. .++|..|..+|.++..+|+ |.+|..++.+|=..
T Consensus 334 ~~~Al~yL~kA~d--~ddPetWv~vAEa~I~LGNL~d~eS~eQe~~Y~eAE~iL~kAN~a 391 (404)
T PF12753_consen 334 IKKALEYLKKAQD--EDDPETWVDVAEAMIDLGNLYDNESKEQEKAYKEAEKILKKANKA 391 (404)
T ss_dssp HHHHHHHHHHHHH--S--TTHHHHHHHHHHHHHHH-SSHHH-HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhc--cCChhHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHhhc
Confidence 3578888888866 5678899999999888776 55556555555443
No 326
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=89.83 E-value=4.4 Score=27.41 Aligned_cols=57 Identities=21% Similarity=0.165 Sum_probs=41.2
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH-HHHHccCCCCHHHHHHH
Q 038754 4 EAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYY-HKALWLKPDDQFCTEML 60 (79)
Q Consensus 4 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~-~~al~~~p~~~~~~~~l 60 (79)
.+.-..+.++..+|.++.+..++|.++...|....+...+ +.+....|++......+
T Consensus 85 ~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 142 (620)
T COG3914 85 LAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHL 142 (620)
T ss_pred hHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhH
Confidence 4455667788888888889998888877666666555444 44888888887665555
No 327
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=89.08 E-value=5.7 Score=29.80 Aligned_cols=46 Identities=9% Similarity=0.098 Sum_probs=24.0
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 038754 5 AISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLK 50 (79)
Q Consensus 5 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 50 (79)
+...|.-.+...|.-.+.|..+...-.+.|+..-+...|++++.+.
T Consensus 1619 GRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1619 GRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred hHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 3344555555555555555555555555555555555555555443
No 328
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=88.94 E-value=0.83 Score=17.60 Aligned_cols=27 Identities=15% Similarity=0.145 Sum_probs=22.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 038754 23 YAGLAYTYHLQDNFSAAITYYHKALWL 49 (79)
Q Consensus 23 ~~~~~~~~~~~~~~~~A~~~~~~al~~ 49 (79)
|..+-..|.+.|++++|...|.+..+.
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~~ 29 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLER 29 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 556667889999999999999887653
No 329
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.90 E-value=2.7 Score=23.42 Aligned_cols=41 Identities=17% Similarity=0.067 Sum_probs=36.5
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 038754 1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAIT 41 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 41 (79)
+|.+|+..++.+.+..+..+.+.-.++.|++-.||..-=..
T Consensus 59 ~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~Wr~~ 99 (153)
T TIGR02561 59 NYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAEWHVH 99 (153)
T ss_pred CHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChHHHHH
Confidence 48899999999999999999999999999999999877543
No 330
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=88.83 E-value=3.3 Score=25.14 Aligned_cols=49 Identities=16% Similarity=0.040 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHc------CCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhh
Q 038754 20 LSTYAGLAYTYHLQ------DNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEG 68 (79)
Q Consensus 20 ~~~~~~~~~~~~~~------~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 68 (79)
..++..+|.....+ +..++++..|..+++++|+...++..++......-
T Consensus 252 a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~ 306 (352)
T PF02259_consen 252 AKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLL 306 (352)
T ss_pred HHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHH
Confidence 45777778777777 88999999999999999999877777776666543
No 331
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=86.87 E-value=2.6 Score=28.32 Aligned_cols=45 Identities=16% Similarity=0.243 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhhC-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 038754 4 EAISCYERALTLL-----NRSLSTYAGLAYTYHLQDNFSAAITYYHKALW 48 (79)
Q Consensus 4 ~A~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 48 (79)
.++.+|.+++... ..+...|..+|-.|++.+++.+|+..|-.+-.
T Consensus 297 ~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR~~~~~eA~~~Wa~aa~ 346 (618)
T PF05053_consen 297 TPLELFNEAISSARTYYNNHHVYPYTYLGGYYYRHKRYREALRSWAEAAD 346 (618)
T ss_dssp -HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCccccceehhhHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666543 34567788899999999999999999887754
No 332
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=86.56 E-value=6.6 Score=26.17 Aligned_cols=46 Identities=24% Similarity=0.315 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcc
Q 038754 2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQD---NFSAAITYYHKALWL 49 (79)
Q Consensus 2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~al~~ 49 (79)
+..|+.++.++-+.+ ++.+.+.+|.+|..-. ++..|..+|..|-+.
T Consensus 309 ~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~ 357 (552)
T KOG1550|consen 309 YEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA 357 (552)
T ss_pred HHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc
Confidence 345666666665554 4556666666665544 455666666666554
No 333
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=86.45 E-value=6.3 Score=24.97 Aligned_cols=62 Identities=13% Similarity=0.062 Sum_probs=45.7
Q ss_pred HHHHHHHHHHhhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH-HHHHHHHHHHH
Q 038754 4 EAISCYERALTLLNR---SLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQ-FCTEMLSLALV 65 (79)
Q Consensus 4 ~A~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~ 65 (79)
+.+..+...++.=|+ .+..|..++.++...|.+++.+..|++|+....... ..+..+.+.+.
T Consensus 121 ei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 121 EILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 445556666666664 467899999999999999999999999999998865 22333444444
No 334
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=86.35 E-value=1.3 Score=17.11 Aligned_cols=27 Identities=19% Similarity=0.183 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 038754 22 TYAGLAYTYHLQDNFSAAITYYHKALW 48 (79)
Q Consensus 22 ~~~~~~~~~~~~~~~~~A~~~~~~al~ 48 (79)
.|..+-.++.+.|+++.|...|+.-.+
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 567777889999999999999887654
No 335
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=86.24 E-value=2.5 Score=23.15 Aligned_cols=38 Identities=11% Similarity=-0.149 Sum_probs=28.8
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q 038754 1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSA 38 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 38 (79)
++.-|..+.+.++..+|++..+....+.+|.++|.-.+
T Consensus 85 d~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~ 122 (141)
T PF14863_consen 85 DYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSE 122 (141)
T ss_dssp -HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-S
T ss_pred CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhcc
Confidence 35678889999999999999999999998887776544
No 336
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=85.95 E-value=5.8 Score=26.55 Aligned_cols=50 Identities=18% Similarity=0.213 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhhcC
Q 038754 22 TYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGRHG 71 (79)
Q Consensus 22 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 71 (79)
....+|.--+..|+|+-+.....+++--+|+|..++...++++...|-..
T Consensus 454 rVl~la~ea~~kGdyrW~a~lln~~VfAdp~n~~Ar~L~Ad~lEQLgYqa 503 (655)
T COG2015 454 RVLELAREAFDKGDYRWAAELLNQAVFADPGNKAARELQADALEQLGYQA 503 (655)
T ss_pred HHHHHHHHHHhcccchHHHHHHhhHHhcCCccHHHHHHHHhHHHHhhhhh
Confidence 34556677789999999999999999999999999999999998877543
No 337
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=85.89 E-value=5.2 Score=27.04 Aligned_cols=45 Identities=11% Similarity=0.199 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 038754 3 HEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKAL 47 (79)
Q Consensus 3 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 47 (79)
++....|++.+..-|.++.+|......-....+|+.....|.++|
T Consensus 36 ~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCL 80 (656)
T KOG1914|consen 36 DKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCL 80 (656)
T ss_pred HHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344444555555555555555555555555555555554444444
No 338
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.47 E-value=4.9 Score=27.29 Aligned_cols=43 Identities=14% Similarity=0.121 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHccCCC-CHHHHHHHHHHH
Q 038754 22 TYAGLAYTYHLQDNFSAAITYYHKALWLKPD-DQFCTEMLSLAL 64 (79)
Q Consensus 22 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~ 64 (79)
+++..-..+.+.|.++.|.++++-.++++|. ||.+...+.+.+
T Consensus 344 ~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ 387 (665)
T KOG2422|consen 344 ALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIY 387 (665)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHH
Confidence 3333344456889999999999999999998 886665555444
No 339
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=85.26 E-value=1.6 Score=17.06 Aligned_cols=26 Identities=12% Similarity=0.134 Sum_probs=14.8
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHH
Q 038754 6 ISCYERALTLLNRSLSTYAGLAYTYH 31 (79)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 (79)
+.+...++..+|.+..+|..+-.+..
T Consensus 3 l~~~~~~l~~~pknys~W~yR~~ll~ 28 (31)
T PF01239_consen 3 LEFTKKALEKDPKNYSAWNYRRWLLK 28 (31)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcccccHHHHHHHHHH
Confidence 44555666666666666665554443
No 340
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=85.01 E-value=3.4 Score=24.79 Aligned_cols=26 Identities=15% Similarity=0.013 Sum_probs=21.7
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHH
Q 038754 18 RSLSTYAGLAYTYHLQDNFSAAITYY 43 (79)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~A~~~~ 43 (79)
.+|..+..+|..|.+-+++.+|..+|
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHH
Confidence 58999999999999999999999777
No 341
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=84.76 E-value=6.2 Score=27.46 Aligned_cols=58 Identities=21% Similarity=0.167 Sum_probs=48.9
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHH
Q 038754 1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTE 58 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 58 (79)
+|.+++.-+.-++...|....++...+.+|...+..+-|++........+|+++.+..
T Consensus 108 ~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~e 165 (748)
T KOG4151|consen 108 EYPKAIPECELALESQPRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSASE 165 (748)
T ss_pred chhhhcCchhhhhhccchHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHH
Confidence 3567777788888999999999999999999999999999998888899999864443
No 342
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=84.52 E-value=7.9 Score=25.80 Aligned_cols=64 Identities=20% Similarity=0.150 Sum_probs=45.8
Q ss_pred CHHHHHHHHHHHHhh-----CCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH
Q 038754 1 IYHEAISCYERALTL-----LNRSLSTYAGLAYTYHLQD-----NFSAAITYYHKALWLKPDDQFCTEMLSLALVD 66 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-----~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 66 (79)
+++.|+.++..+... ....+.+.+.+|.+|.+.. ++..|+.+|.++-.+...+. ...++.+...
T Consensus 264 d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~~a--~~~lg~~~~~ 337 (552)
T KOG1550|consen 264 DLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNPDA--QYLLGVLYET 337 (552)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCchH--HHHHHHHHHc
Confidence 467888888888761 1126678889999998854 67889999999998875544 4455555443
No 343
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=84.43 E-value=4.2 Score=22.56 Aligned_cols=39 Identities=18% Similarity=0.136 Sum_probs=31.4
Q ss_pred HHHHHHHHHcC-CHHHHHHHHHHHHccCCCCHHHHHHHHH
Q 038754 24 AGLAYTYHLQD-NFSAAITYYHKALWLKPDDQFCTEMLSL 62 (79)
Q Consensus 24 ~~~~~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~l~~ 62 (79)
-.+|..+...| +..++..+|-+|+..-|++.....-+..
T Consensus 94 V~~GE~L~~~g~~~~ega~hf~nAl~Vc~qP~~LL~iyq~ 133 (148)
T TIGR00985 94 VQLGEELMAQGTNVDEGAVHFYNALKVYPQPQQLLSIYQQ 133 (148)
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 35788899999 9999999999999999987755544443
No 344
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.21 E-value=7.2 Score=23.70 Aligned_cols=67 Identities=16% Similarity=0.026 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHhhCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHH--HHHHHHHHHhh
Q 038754 2 YHEAISCYERALTLLNRSL-------STYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCT--EMLSLALVDEG 68 (79)
Q Consensus 2 ~~~A~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~--~~l~~~~~~~~ 68 (79)
|.+|+..|+++.+..-+++ .-++..|.|+.-..+.-.+...+++-..++|.+...+ ..+.+++....
T Consensus 170 Y~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckflk~L~~aie 245 (288)
T KOG1586|consen 170 YSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFLKDLLDAIE 245 (288)
T ss_pred HHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHh
Confidence 6788888888877665543 4556678888888999999999999999999876333 34455544443
No 345
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=84.14 E-value=4.7 Score=21.47 Aligned_cols=44 Identities=14% Similarity=0.148 Sum_probs=31.7
Q ss_pred HHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 038754 4 EAISCYERALT--LLNRSLSTYAGLAYTYHLQDNFSAAITYYHKAL 47 (79)
Q Consensus 4 ~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 47 (79)
++...|..+.. +....+..|-..|..+...|++.+|...|+.++
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 34455555444 445678888889999999999999999988765
No 346
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=82.65 E-value=12 Score=25.17 Aligned_cols=36 Identities=17% Similarity=0.024 Sum_probs=29.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHH--------HHHccCCCCH
Q 038754 19 SLSTYAGLAYTYHLQDNFSAAITYYH--------KALWLKPDDQ 54 (79)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~A~~~~~--------~al~~~p~~~ 54 (79)
.+..++..|..+...|+.+.|...|. .+...++.+.
T Consensus 403 ~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~E 446 (608)
T PF10345_consen 403 YPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRE 446 (608)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchH
Confidence 48899999999999999999999998 4445555544
No 347
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=82.53 E-value=7.9 Score=22.93 Aligned_cols=33 Identities=12% Similarity=0.025 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 038754 20 LSTYAGLAYTYHLQDNFSAAITYYHKALWLKPD 52 (79)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 52 (79)
..+...+|.-|+..|++++|...|+.+....-.
T Consensus 178 ~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~ 210 (247)
T PF11817_consen 178 SYLSLEMAEEYFRLGDYDKALKLLEPAASSYRR 210 (247)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence 456678999999999999999999999765443
No 348
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=82.40 E-value=4.3 Score=21.08 Aligned_cols=28 Identities=18% Similarity=0.134 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 038754 21 STYAGLAYTYHLQDNFSAAITYYHKALW 48 (79)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~A~~~~~~al~ 48 (79)
.-+..++..|...|.+++|++.+.+...
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 4578899999999999999999988877
No 349
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.14 E-value=9 Score=23.31 Aligned_cols=54 Identities=20% Similarity=0.242 Sum_probs=37.9
Q ss_pred CHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH
Q 038754 1 IYHEAISCYERALTLLNR------SLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQ 54 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 54 (79)
++++|+.+|+.+-+--.. .-.++..-+..-..+++|..|+..|+++..-.-+++
T Consensus 129 d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 129 DFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred HHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 356777777777553321 124555556666789999999999999988777766
No 350
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=81.82 E-value=5.2 Score=27.67 Aligned_cols=49 Identities=14% Similarity=0.203 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 038754 3 HEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKP 51 (79)
Q Consensus 3 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 51 (79)
+.-...|++++++.-..|..-.|+|..+-...-++++.+.|++.+.+-|
T Consensus 494 estk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk 542 (835)
T KOG2047|consen 494 ESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFK 542 (835)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCC
Confidence 4556778999999988999999999999888899999999999998854
No 351
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.81 E-value=9.6 Score=23.38 Aligned_cols=21 Identities=19% Similarity=0.127 Sum_probs=14.0
Q ss_pred HHHcCCHHHHHHHHHHHHccC
Q 038754 30 YHLQDNFSAAITYYHKALWLK 50 (79)
Q Consensus 30 ~~~~~~~~~A~~~~~~al~~~ 50 (79)
....-++++|++.|++++.+-
T Consensus 120 ~lenv~Pd~AlqlYqralavv 140 (308)
T KOG1585|consen 120 ALENVKPDDALQLYQRALAVV 140 (308)
T ss_pred HhhcCCHHHHHHHHHHHHHHH
Confidence 345666777777777777653
No 352
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996. This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.
Probab=81.18 E-value=3.5 Score=17.88 Aligned_cols=32 Identities=13% Similarity=-0.100 Sum_probs=27.8
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q 038754 8 CYERALTLLNRSLSTYAGLAYTYHLQDNFSAA 39 (79)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 39 (79)
.|..++-.+|++...+..++..+...|+...|
T Consensus 4 all~AI~~~P~ddt~RLvYADWL~e~gdp~ra 35 (42)
T TIGR02996 4 ALLRAILAHPDDDTPRLVYADWLDEHGDPARA 35 (42)
T ss_pred HHHHHHHhCCCCcchHHHHHHHHHHcCCHHHH
Confidence 46678889999999999999999999999654
No 353
>PF13830 DUF4192: Domain of unknown function (DUF4192)
Probab=80.38 E-value=11 Score=23.24 Aligned_cols=55 Identities=20% Similarity=0.157 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHH
Q 038754 3 HEAISCYERALTLLNRS--LSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCT 57 (79)
Q Consensus 3 ~~A~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 57 (79)
..+...+..+.+.-|.. +.++..+|.+.+..|+-..|-..++.++..+|++.++.
T Consensus 255 ~~a~~lw~~~~r~~~~~~ra~~l~l~a~~a~~~g~g~~A~~al~~a~~~~p~~~la~ 311 (324)
T PF13830_consen 255 QAAERLWRALARRLPGPWRAAALALLAWAAWLRGDGALAGVALDRALEADPDHSLAQ 311 (324)
T ss_pred hHHHHHHHHHHHhcCCccchHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCcHHH
Confidence 35666677777776654 67888999999999999999999999999999987554
No 354
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=80.15 E-value=4.1 Score=26.46 Aligned_cols=31 Identities=23% Similarity=0.101 Sum_probs=27.6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 038754 18 RSLSTYAGLAYTYHLQDNFSAAITYYHKALW 48 (79)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 48 (79)
+++..|..+|.....+|+++-|..+|+++-.
T Consensus 345 ~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d 375 (443)
T PF04053_consen 345 DDPEKWKQLGDEALRQGNIELAEECYQKAKD 375 (443)
T ss_dssp STHHHHHHHHHHHHHTTBHHHHHHHHHHCT-
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC
Confidence 5789999999999999999999999988644
No 355
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=80.11 E-value=13 Score=23.82 Aligned_cols=39 Identities=15% Similarity=-0.041 Sum_probs=33.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHH
Q 038754 19 SLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCT 57 (79)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 57 (79)
+-..+...|..+.++|+..+|...|++++.+.++.....
T Consensus 364 y~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~ 402 (415)
T COG4941 364 YHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERA 402 (415)
T ss_pred ccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHH
Confidence 456778889999999999999999999999998876443
No 356
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=79.28 E-value=3.2 Score=24.43 Aligned_cols=30 Identities=30% Similarity=0.385 Sum_probs=23.5
Q ss_pred HHHHHHHHHccCCCCHHHHHHHHHHHHHhh
Q 038754 39 AITYYHKALWLKPDDQFCTEMLSLALVDEG 68 (79)
Q Consensus 39 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 68 (79)
|..+|.+|+.+.|++-..+..++-+....+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~ 30 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQG 30 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhcccc
Confidence 678999999999999877888777666543
No 357
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.26 E-value=10 Score=22.21 Aligned_cols=42 Identities=19% Similarity=0.064 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHH
Q 038754 2 YHEAISCYERALTLLNRS---LSTYAGLAYTYHLQDNFSAAITYY 43 (79)
Q Consensus 2 ~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~ 43 (79)
+++|+..++.++....++ +-+-..+|.+...+|.+++|+..+
T Consensus 105 ~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L 149 (207)
T COG2976 105 LDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTL 149 (207)
T ss_pred HHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 445555555554433322 234445555556666666555443
No 358
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=78.97 E-value=11 Score=22.14 Aligned_cols=40 Identities=28% Similarity=0.247 Sum_probs=33.3
Q ss_pred CHHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHcCCHHHHH
Q 038754 1 IYHEAISCYERALTLLNR----SLSTYAGLAYTYHLQDNFSAAI 40 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~A~ 40 (79)
+.++++..+-+++++.+. +++.+..++.+|.++|+++.|=
T Consensus 155 D~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 155 DPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 357888889999988765 4899999999999999998774
No 359
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=78.57 E-value=11 Score=24.76 Aligned_cols=35 Identities=23% Similarity=0.291 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH
Q 038754 20 LSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQ 54 (79)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 54 (79)
+.-++-+|.+..-+++|..|.+++.+|+...|++.
T Consensus 247 ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~ 281 (493)
T KOG2581|consen 247 ARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHA 281 (493)
T ss_pred HHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchh
Confidence 45677789999999999999999999999999864
No 360
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=78.49 E-value=18 Score=24.63 Aligned_cols=48 Identities=13% Similarity=0.031 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 038754 2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWL 49 (79)
Q Consensus 2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 49 (79)
...|...|+--++..++++..-..+...+...++-..+...|++++..
T Consensus 417 ~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 417 KETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred hhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 456777888888888888888888888888888888888888888876
No 361
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.31 E-value=11 Score=23.12 Aligned_cols=49 Identities=20% Similarity=0.240 Sum_probs=30.7
Q ss_pred CHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 038754 1 IYHEAISCYERALTLLNRS------LSTYAGLAYTYHLQDNFSAAITYYHKALWL 49 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 49 (79)
+|++|..++.++.+-...+ ..++-..|.....+..+.++...|+++..+
T Consensus 46 ~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~l 100 (308)
T KOG1585|consen 46 KFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASEL 100 (308)
T ss_pred cHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3567777777777544332 334455566666677777777777777665
No 362
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=78.07 E-value=3.9 Score=16.63 Aligned_cols=22 Identities=23% Similarity=0.308 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHH
Q 038754 3 HEAISCYERALTLLNRSLSTYAG 25 (79)
Q Consensus 3 ~~A~~~~~~~~~~~~~~~~~~~~ 25 (79)
+.|..+|++.+..+|+ +..|..
T Consensus 4 dRAR~IyeR~v~~hp~-~k~Wik 25 (32)
T PF02184_consen 4 DRARSIYERFVLVHPE-VKNWIK 25 (32)
T ss_pred HHHHHHHHHHHHhCCC-chHHHH
Confidence 4455555555555433 334433
No 363
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=77.48 E-value=20 Score=24.38 Aligned_cols=61 Identities=11% Similarity=0.176 Sum_probs=41.5
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC-CCCHHHHHHHHHHHHHhh
Q 038754 7 SCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLK-PDDQFCTEMLSLALVDEG 68 (79)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~ 68 (79)
.+..+.+-.+..+..++...+.....+.+|.+|++++++.-+.+ |..|. ...+..++....
T Consensus 763 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 824 (831)
T PRK15180 763 DYAKKLLVFDSENAYALKYAALNAMHLRDYTQALQYWQRLEKVNGPTEPV-TRQISTCITALQ 824 (831)
T ss_pred hhhhhheeeccchHHHHHHHHhhHhHHHHHHHHHHHHHHHHhccCCCcch-HHHHHHHHHHHh
Confidence 34455555666677777766777788999999999999998875 44443 335555554443
No 364
>KOG2709 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.40 E-value=3.8 Score=26.77 Aligned_cols=30 Identities=20% Similarity=0.302 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 038754 20 LSTYAGLAYTYHLQDNFSAAITYYHKALWL 49 (79)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 49 (79)
+.+.-+.|.+|-.++++++|+.+|+++|.+
T Consensus 22 A~~~V~~gl~~dE~~~~e~a~~~Ye~gl~~ 51 (560)
T KOG2709|consen 22 AYASVEQGLCYDEVNDWENALAMYEKGLNL 51 (560)
T ss_pred HHHHHHhhcchhhhcCHHHHHHHHHHHHHH
Confidence 466778999999999999999999999874
No 365
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=77.39 E-value=5.8 Score=23.61 Aligned_cols=33 Identities=15% Similarity=0.238 Sum_probs=25.1
Q ss_pred HHHHHHHHHHH---------HcCCHHHHHHHHHHHHccCCCC
Q 038754 21 STYAGLAYTYH---------LQDNFSAAITYYHKALWLKPDD 53 (79)
Q Consensus 21 ~~~~~~~~~~~---------~~~~~~~A~~~~~~al~~~p~~ 53 (79)
..|-..|..+. ..++...|+.++++|+.++|+-
T Consensus 170 Kl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 170 KLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred HHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC
Confidence 45566677663 3457789999999999999864
No 366
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=77.36 E-value=9.7 Score=20.84 Aligned_cols=39 Identities=15% Similarity=0.061 Sum_probs=28.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH
Q 038754 28 YTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVD 66 (79)
Q Consensus 28 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 66 (79)
..++..-+.+.|...|..++...|++..++..+.+.+..
T Consensus 84 ~~~iaKle~e~Ae~vY~el~~~~P~HLpaHla~i~~lDS 122 (139)
T PF12583_consen 84 CSWIAKLEPENAEQVYEELLEAHPDHLPAHLAMIQNLDS 122 (139)
T ss_dssp HHHHTTS-HHHHHHHHHHHHHH-TT-THHHHHHHHHHHH
T ss_pred HHHHHhhCHHHHHHHHHHHHHHCcchHHHHHHHHHccCc
Confidence 334444566889999999999999999888887777665
No 367
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=77.35 E-value=13 Score=22.32 Aligned_cols=46 Identities=13% Similarity=0.112 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHh-----hCCCCHH---HHHHHHHHH-HHcCCHHHHHHHHHHHHc
Q 038754 3 HEAISCYERALT-----LLNRSLS---TYAGLAYTY-HLQDNFSAAITYYHKALW 48 (79)
Q Consensus 3 ~~A~~~~~~~~~-----~~~~~~~---~~~~~~~~~-~~~~~~~~A~~~~~~al~ 48 (79)
+.|...|+.+++ +.|.+|. ...|++..| --++++++|+...++++.
T Consensus 145 ~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd 199 (244)
T smart00101 145 ENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD 199 (244)
T ss_pred HHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467788888776 4466764 334445454 456999998876666654
No 368
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=76.73 E-value=5.8 Score=21.59 Aligned_cols=29 Identities=24% Similarity=0.113 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 038754 22 TYAGLAYTYHLQDNFSAAITYYHKALWLK 50 (79)
Q Consensus 22 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 50 (79)
-+..+|....+.+++-.++-.|++|+.+.
T Consensus 3 ~htllAd~a~~~~~~l~si~hYQqAls~s 31 (140)
T PF10952_consen 3 KHTLLADQAFKEADPLRSILHYQQALSLS 31 (140)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999763
No 369
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=76.52 E-value=3.5 Score=26.05 Aligned_cols=44 Identities=9% Similarity=0.067 Sum_probs=38.6
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH
Q 038754 11 RALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQ 54 (79)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 54 (79)
++...-+.++..|..++.-..+.+.+...-..|..+++.+|.|.
T Consensus 98 R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nv 141 (435)
T COG5191 98 RSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNV 141 (435)
T ss_pred hhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 44445578999999999888999999999999999999999997
No 370
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=76.15 E-value=7.9 Score=22.62 Aligned_cols=68 Identities=19% Similarity=0.157 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHhhC-----CC--CHHHHHHHHHHHHHcCCHHH-------HHHHHHHHHccCCC--C----HHHHHHHH
Q 038754 2 YHEAISCYERALTLL-----NR--SLSTYAGLAYTYHLQDNFSA-------AITYYHKALWLKPD--D----QFCTEMLS 61 (79)
Q Consensus 2 ~~~A~~~~~~~~~~~-----~~--~~~~~~~~~~~~~~~~~~~~-------A~~~~~~al~~~p~--~----~~~~~~l~ 61 (79)
+++|+..|.-++-.. +. -+..+..+|++|...|+.+. |...|.+++..... . ....-.++
T Consensus 93 ~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLig 172 (214)
T PF09986_consen 93 LEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIG 172 (214)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHH
Confidence 455665554444321 22 26788999999999999555 55555555544322 2 13334456
Q ss_pred HHHHHhhh
Q 038754 62 LALVDEGR 69 (79)
Q Consensus 62 ~~~~~~~~ 69 (79)
.+....|+
T Consensus 173 eL~rrlg~ 180 (214)
T PF09986_consen 173 ELNRRLGN 180 (214)
T ss_pred HHHHHhCC
Confidence 55555544
No 371
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=75.96 E-value=7.1 Score=23.49 Aligned_cols=27 Identities=22% Similarity=0.242 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 038754 21 STYAGLAYTYHLQDNFSAAITYYHKAL 47 (79)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~A~~~~~~al 47 (79)
..+.+.|...++.++|..|+.+|+-++
T Consensus 247 ~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 247 TLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 345667888999999999999999776
No 372
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=75.91 E-value=9 Score=20.96 Aligned_cols=29 Identities=17% Similarity=0.128 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 038754 2 YHEAISCYERALTLLNRSLSTYAGLAYTY 30 (79)
Q Consensus 2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 30 (79)
.+.|..+|.++++..|++..++..+-...
T Consensus 92 ~e~Ae~vY~el~~~~P~HLpaHla~i~~l 120 (139)
T PF12583_consen 92 PENAEQVYEELLEAHPDHLPAHLAMIQNL 120 (139)
T ss_dssp HHHHHHHHHHHHHH-TT-THHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCcchHHHHHHHHHcc
Confidence 46788999999999999998888776554
No 373
>PF12925 APP_E2: E2 domain of amyloid precursor protein; InterPro: IPR024329 Amyloid-beta precursor protein (APP, or A4) is associated with Alzheimer's disease (AD), because one of its breakdown products, amyloid-beta (A-beta), aggregates to form amyloid or senile plaques [, ]. Mutations in APP or in proteins that process APP have been linked with early-onset, familial AD. Individuals with Down's syndrome carry an extra copy of chromosome 21, which contains the APP gene, and almost invariably develop amyloid plaques and Alzheimer's symptoms. APP is important for the neurogenesis and neuronal regeneration, either through the intact protein, or through its many breakdown products []. APP consists of a large N-terminal extracellular region containing heparin-binding and copper-binding sites, a short hydrophobic transmembrane domain, and a short C-terminal intracellular domain. The N-terminal region is similar in structure to cysteine-rich growth factors and appears to function as a cell surface receptor, contributing to neurite growth, neuronal adhesion, axonogenesis and cell mobility []. APP acts as a kinesin I membrane receptor to mediate the axonal transport of beta-secretase and presenilin 1. The N-terminal domain can regulate neurite outgrowth through its binding to heparin and collagen I and IV, which are components of the extracellular matrix. APP is also coupled to apoptosis-inducing pathways, and is involved in copper homeostasis/oxidative stress through copper ion reduction, where copper-metallated APP induces neuronal death []. The C-terminal intracellular domain appears to be involved in transcription regulation through protein-protein interactions. APP can promote transcription activation through binding to APBB1/Tip60, and may bind to the adaptor protein FE65 to transactivate a wide variety of different promoters. APP can be processed by different sets of enzymes: In the non-amyloidogenic (non-plaque-forming) pathway, APP is cleaved by alpha-secretase to yield a soluble N-terminal sAPP-alpha (neuroprotective) and a membrane-bound CTF-alpha. CTF-alpha is broken-down by presenilin-containing gamma-secretase to yield soluble p3 and membrane-bound AICD (nuclear signalling). In the amyloidogenic pathway (plaque-forming), APP is broken down by beta-secretase to yield soluble sAPP-beta and membrane-bound CTF-beta. CTF-beta is broken down by gamma-secretase to yield soluble amyloid-beta and membrane-bound AICD. Amyloid-beta is required for neuronal function, but can aggregate to form amyloid plaques that seem to disrupt brain cells by clogging points of cell-cell contact. The E2 domain is the largest of the conserved domains in the amyloidogenic glycoproteins. The structure of E2 consists of two coiled-coil sub-structures connected through a continuous helix, and bears an unexpected resemblance to the spectrin family of protein structures. E2 can reversibly dimerise in solution, and the dimerisation occurs along the longest dimension of the molecule in an antiparallel orientation, which enables the N-terminal substructure of one monomer to pack against the C-terminal substructure of a second monomer. The high degree of conservation of residues at the putative dimer interface suggests that the E2 dimer observed in the crystal could be physiologically relevant. Heparin sulphate proteoglycans, the putative ligands for the precursor present in extracellular matrix, bind to E2 at a conserved and positively charged site near the dimer interface [].; PDB: 3K6B_A 3K66_A 1TKN_A 3NYL_A 3NYJ_A 3UMH_A 3UMK_A 3UMI_A 3QMK_B 3PMR_B ....
Probab=75.56 E-value=11 Score=21.86 Aligned_cols=52 Identities=12% Similarity=0.139 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHccCCCCH
Q 038754 3 HEAISCYERALTLLNRSLSTYAGLAYTYHLQ--DNFSAAITYYHKALWLKPDDQ 54 (79)
Q Consensus 3 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~A~~~~~~al~~~p~~~ 54 (79)
..|+.+|..++..+|.++.-....-..|.+. .+-.-.+..|+.+...+|...
T Consensus 114 r~al~~y~~al~~~ppn~~~vl~~Lk~yiRa~~KDR~Htl~h~~H~~~~dp~~A 167 (193)
T PF12925_consen 114 RAALENYTAALQADPPNPHKVLKALKKYIRAEEKDRQHTLRHFEHLRMVDPEEA 167 (193)
T ss_dssp HHHHHHHHHHHTCSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCHHHH
Confidence 4577888888888877765555444444333 333447888888888888553
No 374
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=75.26 E-value=6.1 Score=23.39 Aligned_cols=46 Identities=22% Similarity=0.216 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHh-----hCCCCHH---HHHHHHHHH-HHcCCHHHHHHHHHHHHc
Q 038754 3 HEAISCYERALT-----LLNRSLS---TYAGLAYTY-HLQDNFSAAITYYHKALW 48 (79)
Q Consensus 3 ~~A~~~~~~~~~-----~~~~~~~---~~~~~~~~~-~~~~~~~~A~~~~~~al~ 48 (79)
+.|...|+++++ +.|.+|. ...+++..| -..|+...|+...++++.
T Consensus 143 ~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 143 EKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 456666666655 4577763 444555555 458999999888877775
No 375
>PF06051 DUF928: Domain of Unknown Function (DUF928); InterPro: IPR010328 This is a family of uncharacterised bacterial proteins.
Probab=75.23 E-value=13 Score=21.30 Aligned_cols=51 Identities=16% Similarity=0.069 Sum_probs=43.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhhcCCCC
Q 038754 24 AGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGRHGIDP 74 (79)
Q Consensus 24 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~ 74 (79)
...+.+|.+.|=+-+|+..+-+...-.|+|+.....+..++...|...+..
T Consensus 135 ~e~~~~YAe~GiWyDaL~~La~lr~~~p~d~~l~~~W~~LL~svgL~~ia~ 185 (189)
T PF06051_consen 135 LERAALYAENGIWYDALATLAELRRSQPNDPQLAQDWQELLESVGLEEIAQ 185 (189)
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHcCCCChHHHHHHHHHHHhCCchhhhh
Confidence 456778889999999999999999999999999989999988777665543
No 376
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.94 E-value=14 Score=21.53 Aligned_cols=29 Identities=14% Similarity=0.150 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 038754 20 LSTYAGLAYTYHLQDNFSAAITYYHKALW 48 (79)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 48 (79)
..+.-.+|.+-++.|++..|..+|.+...
T Consensus 167 ~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 167 HSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 46778899999999999999999998887
No 377
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=74.79 E-value=15 Score=22.45 Aligned_cols=35 Identities=17% Similarity=0.207 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHH
Q 038754 22 TYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFC 56 (79)
Q Consensus 22 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 56 (79)
...++=..+...++++.|..+.++.+.++|.++.-
T Consensus 183 ll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~e 217 (269)
T COG2912 183 LLRNLKAALLRELQWELALRVAERLLDLNPEDPYE 217 (269)
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhh
Confidence 34455556788999999999999999999999833
No 378
>KOG4056 consensus Translocase of outer mitochondrial membrane complex, subunit TOM20 [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.18 E-value=13 Score=20.55 Aligned_cols=34 Identities=12% Similarity=-0.070 Sum_probs=29.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHH
Q 038754 24 AGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCT 57 (79)
Q Consensus 24 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 57 (79)
..+|..+..+|+++++..++-.|+..-|+.....
T Consensus 85 v~lGE~L~~qg~~e~ga~h~~nAi~vcgqpaqLL 118 (143)
T KOG4056|consen 85 VQLGEELLAQGNEEEGAEHLANAIVVCGQPAQLL 118 (143)
T ss_pred HHhHHHHHHccCHHHHHHHHHHHHhhcCCHHHHH
Confidence 4689999999999999999999999999876443
No 379
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=73.59 E-value=22 Score=23.18 Aligned_cols=70 Identities=11% Similarity=0.071 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC----HHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhhcC
Q 038754 2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDN----FSAAITYYHKALWLKPDDQFCTEMLSLALVDEGRHG 71 (79)
Q Consensus 2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 71 (79)
+..=+..+.++++.+|.+-.+|.-.=.++..... ..+-+++..+++.-++.|.-+|..-...+...-..+
T Consensus 127 ~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~ 200 (421)
T KOG0529|consen 127 WNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTLHPKE 200 (421)
T ss_pred HHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHHHhcccc
Confidence 4556788999999999998888777766655544 466888899999999999988877777766543333
No 380
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=73.40 E-value=21 Score=23.82 Aligned_cols=46 Identities=17% Similarity=0.137 Sum_probs=35.6
Q ss_pred HHHHHHHHHH--HHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH
Q 038754 20 LSTYAGLAYT--YHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVD 66 (79)
Q Consensus 20 ~~~~~~~~~~--~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 66 (79)
...-+.++.+ ++.+|++..+.-+-....++.| .+.++..++-++-.
T Consensus 460 ~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e 507 (549)
T PF07079_consen 460 EEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLME 507 (549)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHH
Confidence 3444445544 6899999999999999999999 78777777766654
No 381
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.21 E-value=23 Score=25.70 Aligned_cols=32 Identities=16% Similarity=0.108 Sum_probs=28.7
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 038754 18 RSLSTYAGLAYTYHLQDNFSAAITYYHKALWL 49 (79)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 49 (79)
+++..|..+|.....+|+..=|..+|++.-..
T Consensus 670 dd~d~w~rLge~Al~qgn~~IaEm~yQ~~knf 701 (1202)
T KOG0292|consen 670 DDKDVWERLGEEALRQGNHQIAEMCYQRTKNF 701 (1202)
T ss_pred CcHHHHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 58999999999999999999999999887554
No 382
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=69.92 E-value=9.9 Score=17.60 Aligned_cols=40 Identities=10% Similarity=0.066 Sum_probs=26.7
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 038754 9 YERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALW 48 (79)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 48 (79)
+-..++...++..-+...-.-|..+|++++|.++......
T Consensus 12 ~~~~lR~~RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 12 LIDSLRAQRHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3344455555555556666667899999999998877654
No 383
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=68.83 E-value=35 Score=23.45 Aligned_cols=59 Identities=19% Similarity=-0.018 Sum_probs=45.2
Q ss_pred HHHHHHHHHhhCCCCHHHHHHH------HHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHH
Q 038754 5 AISCYERALTLLNRSLSTYAGL------AYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLA 63 (79)
Q Consensus 5 A~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 63 (79)
+..+..-+....|++......+ |.....+|+..++....++++.+.|.++.....+..+
T Consensus 121 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 121 LADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred HHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence 3444555778888887766666 8888899999999999999999999997555444433
No 384
>PF07980 SusD: SusD family; InterPro: IPR012944 This domain occurs in several hypothetical proteins. It also occurs in RagB, Q9ZA59 from SWISSPROT, a protein involved in signalling [] and SusD, Q8A1G2 from SWISSPROT, an outer membrane protein involved in nutrient binding [].; PDB: 3IHV_A 3LEW_A 3JQ1_A 3JQ0_A 3NQP_B 3SNX_A 3L22_A 3OTN_A 3IV0_A 3QNK_C ....
Probab=68.77 E-value=18 Score=20.97 Aligned_cols=30 Identities=17% Similarity=0.084 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 038754 20 LSTYAGLAYTYHLQDNFSAAITYYHKALWL 49 (79)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 49 (79)
++++...|.|+..+|+...|+..+.++-+.
T Consensus 133 aEvyL~~AEA~~~~g~~~~A~~~lN~vR~R 162 (266)
T PF07980_consen 133 AEVYLIYAEALARLGNTAEALEYLNQVRKR 162 (266)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 689999999999999999999999887754
No 385
>PF13006 Nterm_IS4: Insertion element 4 transposase N-terminal; InterPro: IPR024473 This entry represents the N-terminal domain of Insertion Element 4 transposases [].
Probab=68.76 E-value=14 Score=18.99 Aligned_cols=53 Identities=9% Similarity=-0.002 Sum_probs=38.3
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc-CCCCHHHHHHHHHHHHHhhh
Q 038754 17 NRSLSTYAGLAYTYHLQDNFSAAITYYHKALWL-KPDDQFCTEMLSLALVDEGR 69 (79)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~~~ 69 (79)
|.....|+.+|.+++....+.+...-+.-++.- ..-...+...+.++....|.
T Consensus 36 Pa~~vVwlvlamaLfr~~s~~~V~~~L~~~L~~~~~~~~~a~SaitqARqRLG~ 89 (98)
T PF13006_consen 36 PAEVVVWLVLAMALFRDESYEEVVRRLDIGLPGGAEWPFPAPSAITQARQRLGA 89 (98)
T ss_pred cHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCcCccccCCCChHHHHHHHHHcCH
Confidence 667889999999999999999999888888876 22222334455555555544
No 386
>KOG3540 consensus Beta amyloid precursor protein [General function prediction only]
Probab=68.74 E-value=33 Score=23.10 Aligned_cols=52 Identities=15% Similarity=0.162 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH--HHHHHHHHHccCCCCH
Q 038754 3 HEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSA--AITYYHKALWLKPDDQ 54 (79)
Q Consensus 3 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--A~~~~~~al~~~p~~~ 54 (79)
..|+.-|..++..+|.-|.--+..-..|.+..+.+. .+..|++++..||...
T Consensus 329 R~Ale~ylaALqa~pprp~~Vl~aLkrYvRAEqKdr~HTlrhyqHv~~vDpkkA 382 (615)
T KOG3540|consen 329 RDALENYLAALQADPPRPHRVLQALKRYVRAEQKDRMHTLRHYQHVLAVDPKKA 382 (615)
T ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHH
Confidence 357888999999999887655555555655555444 8899999999999765
No 387
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=66.79 E-value=15 Score=23.43 Aligned_cols=42 Identities=19% Similarity=0.293 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH
Q 038754 3 HEAISCYERALTLLNR--SLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQ 54 (79)
Q Consensus 3 ~~A~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 54 (79)
.+|+.+..+++..+.. ...++. -|..|+++|..+++...+++
T Consensus 8 ~kaI~lv~kA~~eD~a~nY~eA~~----------lY~~aleYF~~~lKYE~~~~ 51 (439)
T KOG0739|consen 8 QKAIDLVKKAIDEDNAKNYEEALR----------LYQNALEYFLHALKYEANNK 51 (439)
T ss_pred HHHHHHHHHHhhhcchhchHHHHH----------HHHHHHHHHHHHHHhhhcCh
Confidence 5677778887776632 112211 13456666667776664444
No 388
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.62 E-value=42 Score=23.18 Aligned_cols=47 Identities=15% Similarity=0.227 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHhhC------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 038754 2 YHEAISCYERALTLL------------NRSLSTYAGLAYTYHLQDNFSAAITYYHKALW 48 (79)
Q Consensus 2 ~~~A~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 48 (79)
|++|...|.-++... |.+...+..++.+...+|+.+.|-...+++|-
T Consensus 254 Yeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly 312 (665)
T KOG2422|consen 254 YEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLY 312 (665)
T ss_pred HHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 567777777666644 66788999999999999999988888877764
No 389
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=65.29 E-value=23 Score=20.00 Aligned_cols=50 Identities=20% Similarity=0.183 Sum_probs=39.2
Q ss_pred CHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 038754 1 IYHEAISCYERALTLLNR---SLSTYAGLAYTYHLQDNFSAAITYYHKALWLK 50 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 50 (79)
+++.|++.|.++...... -.+.++++-.+.+..+++..+.....++-.+-
T Consensus 51 d~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~ 103 (177)
T PF10602_consen 51 DLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLI 103 (177)
T ss_pred hHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 467889999987776543 35677788888889999999999988888763
No 390
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=65.27 E-value=29 Score=23.58 Aligned_cols=31 Identities=26% Similarity=0.200 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 038754 21 STYAGLAYTYHLQDNFSAAITYYHKALWLKP 51 (79)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 51 (79)
-.++++|.+|.-+|++++|..++.++..+-|
T Consensus 620 v~~~nLa~a~alq~~~dqAk~ll~~aatl~h 650 (696)
T KOG2471|consen 620 VLFANLAAALALQGHHDQAKSLLTHAATLLH 650 (696)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhhh
Confidence 4689999999999999999999999998877
No 391
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=64.90 E-value=26 Score=20.49 Aligned_cols=39 Identities=13% Similarity=0.088 Sum_probs=29.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHH
Q 038754 26 LAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALV 65 (79)
Q Consensus 26 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 65 (79)
...++.+.|.+++|.+.+++.+. +|++...+..+...+.
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~ 155 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIR 155 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHH
Confidence 44567899999999999999999 8877755544544443
No 392
>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only]
Probab=64.70 E-value=27 Score=24.46 Aligned_cols=37 Identities=19% Similarity=0.288 Sum_probs=32.6
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q 038754 17 NRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD 53 (79)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 53 (79)
-+-..+|..+|.+..+.+++..|..-|.+++++...+
T Consensus 584 iD~f~aW~AWGlA~Lk~e~~aaAR~KFkqafklkged 620 (1141)
T KOG1811|consen 584 IDTFGAWHAWGLACLKAENLAAAREKFKQAFKLKGED 620 (1141)
T ss_pred CCcccHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCc
Confidence 3456899999999999999999999999999987544
No 393
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=63.76 E-value=45 Score=22.86 Aligned_cols=35 Identities=14% Similarity=0.060 Sum_probs=20.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q 038754 19 SLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD 53 (79)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 53 (79)
+....+..+..+...+..++|-.+|++.+..+|++
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (578)
T PRK15490 41 TSLAMLKKAEFLHDVNETERAYALYETLIAQNNDE 75 (578)
T ss_pred hHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCcc
Confidence 34444555555555566666666666666666654
No 394
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=63.66 E-value=36 Score=23.24 Aligned_cols=45 Identities=9% Similarity=-0.123 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 038754 4 EAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALW 48 (79)
Q Consensus 4 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 48 (79)
.|-.....+++..|.+|......+.++..+|+|+.+.....-+-.
T Consensus 307 aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~ 351 (831)
T PRK15180 307 AASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEK 351 (831)
T ss_pred HHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhh
Confidence 344556778899999999999999999999999999887654443
No 395
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=63.53 E-value=43 Score=22.63 Aligned_cols=51 Identities=12% Similarity=0.032 Sum_probs=43.1
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHH
Q 038754 8 CYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTE 58 (79)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 58 (79)
.++.-++-+|.+...|+.+-.-|--+|.+++..+.|++...--|--+.+|.
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ 80 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWR 80 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHH
Confidence 567888999999999999999999999999999999998877775554443
No 396
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.05 E-value=18 Score=25.88 Aligned_cols=33 Identities=15% Similarity=0.149 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHc-cCCC
Q 038754 20 LSTYAGLAYTYHLQDNFSAAITYYHKALW-LKPD 52 (79)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~-~~p~ 52 (79)
..++..+|.-++..|++++|+.+|-+++. ++|.
T Consensus 368 ~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s 401 (933)
T KOG2114|consen 368 AEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPS 401 (933)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChH
Confidence 46788899999999999999999999985 4554
No 397
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=62.63 E-value=17 Score=26.40 Aligned_cols=35 Identities=14% Similarity=0.181 Sum_probs=29.8
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 038754 15 LLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWL 49 (79)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 49 (79)
....+..+.|.+|..|-..|++.+|+.+|.+|-..
T Consensus 962 ~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqaf 996 (1416)
T KOG3617|consen 962 EESGDKAACYHLARMYENDGDVVKAVKFFTRAQAF 996 (1416)
T ss_pred HhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 33567889999999999999999999999887554
No 398
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=61.86 E-value=30 Score=21.59 Aligned_cols=64 Identities=19% Similarity=0.165 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC--HHHHHHHHHHHHHh
Q 038754 4 EAISCYERALTLLNR------SLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD--QFCTEMLSLALVDE 67 (79)
Q Consensus 4 ~A~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~ 67 (79)
.|.+.+..++-.... -..+.+.++..|+...+|+.|..+|.+|+.+.-++ +.+...+...+...
T Consensus 57 n~~e~~d~ALm~Ae~r~D~~~IG~~~~~~~v~~~~ik~Ye~a~~~F~~A~~~~~~d~L~~We~rLet~L~~~ 128 (368)
T COG5091 57 NAKELLDKALMTAEGRGDRSKIGLVNFRYFVHFFNIKDYELAQSYFKKAKNLYVDDTLPLWEDRLETKLNKK 128 (368)
T ss_pred hHHHHHHHHHHhhhccCCcceeeeehhhhHHHhhhHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHhHh
Confidence 455566666554321 13466778889999999999999999999886544 34444555444433
No 399
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.53 E-value=55 Score=23.13 Aligned_cols=48 Identities=17% Similarity=0.122 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 038754 2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWL 49 (79)
Q Consensus 2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 49 (79)
.+.|+++++++-+.+|.++..-.....+...-|...+|+.+......+
T Consensus 410 LD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 410 LDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhh
Confidence 578999999999999999999888888889999999999998877755
No 400
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=60.90 E-value=32 Score=20.31 Aligned_cols=60 Identities=18% Similarity=0.024 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc------------------------CCHHHHHHHHHHHHccCCCCHHHH
Q 038754 2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQ------------------------DNFSAAITYYHKALWLKPDDQFCT 57 (79)
Q Consensus 2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~A~~~~~~al~~~p~~~~~~ 57 (79)
.++|++++.++-.++ +..+.+++...|..- .+.+.|.++-.+|..++ ++++.
T Consensus 128 ~~Ka~~y~traCdl~--~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka~qfa~kACel~--~~~aC 203 (248)
T KOG4014|consen 128 SEKAERYMTRACDLE--DGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMDKALQFAIKACELD--IPQAC 203 (248)
T ss_pred cHHHHHHHHHhccCC--CchHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHHHHHHHHHHHHhcC--ChHHH
Confidence 567888888887776 455666666555543 45677777777777765 34444
Q ss_pred HHHHHHHH
Q 038754 58 EMLSLALV 65 (79)
Q Consensus 58 ~~l~~~~~ 65 (79)
.++.+.+.
T Consensus 204 AN~SrMyk 211 (248)
T KOG4014|consen 204 ANVSRMYK 211 (248)
T ss_pred hhHHHHHH
Confidence 44444443
No 401
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=60.41 E-value=29 Score=23.08 Aligned_cols=45 Identities=16% Similarity=0.069 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 038754 3 HEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKAL 47 (79)
Q Consensus 3 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 47 (79)
+-|+....+.+-++|..+.-+...|.|+..+.+|.+|-.-+..+.
T Consensus 245 dlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia~ 289 (569)
T PF15015_consen 245 DLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIAD 289 (569)
T ss_pred chHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777788899999999999999999999999999877665554
No 402
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=60.41 E-value=34 Score=20.33 Aligned_cols=32 Identities=13% Similarity=0.232 Sum_probs=24.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH
Q 038754 23 YAGLAYTYHLQDNFSAAITYYHKALWLKPDDQ 54 (79)
Q Consensus 23 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 54 (79)
+..++.+..+.|+|++++.+.++++..+|.-.
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt 35 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPELT 35 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS---
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCCCC
Confidence 45678888899999999999999998877553
No 403
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.40 E-value=51 Score=22.43 Aligned_cols=59 Identities=22% Similarity=0.129 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHhhC---CCC----HHHHHHHHHHHHHcC-CHHHHHHHHHHHHccCCCCHHHHHHH
Q 038754 2 YHEAISCYERALTLL---NRS----LSTYAGLAYTYHLQD-NFSAAITYYHKALWLKPDDQFCTEML 60 (79)
Q Consensus 2 ~~~A~~~~~~~~~~~---~~~----~~~~~~~~~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~l 60 (79)
++-|...+++++-+. |.+ -.+...++.+|.+.. .+..+...+++++++..++|.+...+
T Consensus 63 ~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckl 129 (629)
T KOG2300|consen 63 VELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKL 129 (629)
T ss_pred HHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHH
Confidence 455666666666554 222 356778888888877 77888888999999988888554443
No 404
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=59.64 E-value=23 Score=18.20 Aligned_cols=43 Identities=9% Similarity=-0.039 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHH
Q 038754 20 LSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSL 62 (79)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 62 (79)
.......|..-...|++..|.+...++-+..+.++..+..-+.
T Consensus 59 a~~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~ 101 (108)
T PF07219_consen 59 AQRALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAAR 101 (108)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 3455667888889999999999999998886665544433333
No 405
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.90 E-value=42 Score=23.44 Aligned_cols=33 Identities=15% Similarity=0.043 Sum_probs=28.9
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 038754 17 NRSLSTYAGLAYTYHLQDNFSAAITYYHKALWL 49 (79)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 49 (79)
.++..-|..+|.+....+++..|.+|+.++..+
T Consensus 663 ~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 663 ANSEVKWRQLGDAALSAGELPLASECFLRARDL 695 (794)
T ss_pred hcchHHHHHHHHHHhhcccchhHHHHHHhhcch
Confidence 356788999999999999999999999998765
No 406
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=58.26 E-value=11 Score=22.96 Aligned_cols=37 Identities=22% Similarity=0.039 Sum_probs=28.4
Q ss_pred HHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHH
Q 038754 29 TYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALV 65 (79)
Q Consensus 29 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 65 (79)
...+.++.+.|.+.|.+++.+.|+....|..++..-.
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~e 40 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTE 40 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhh
Confidence 3457789999999999999999988766655554433
No 407
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.61 E-value=58 Score=22.19 Aligned_cols=31 Identities=13% Similarity=0.102 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 038754 20 LSTYAGLAYTYHLQDNFSAAITYYHKALWLK 50 (79)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 50 (79)
..+++..|...+.++++.+|....++.++..
T Consensus 445 a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 445 ASILYVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 5688999999999999999999999999986
No 408
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.97 E-value=60 Score=22.11 Aligned_cols=52 Identities=17% Similarity=0.059 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhhC------C-CCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHccCCCCH
Q 038754 3 HEAISCYERALTLL------N-RSLSTYAGLAYTYHLQDN-FSAAITYYHKALWLKPDDQ 54 (79)
Q Consensus 3 ~~A~~~~~~~~~~~------~-~~~~~~~~~~~~~~~~~~-~~~A~~~~~~al~~~p~~~ 54 (79)
..|..+|...++.. + --|.++|.+|..|..+|. ..++..++.+|-....+..
T Consensus 466 ~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY~ 525 (546)
T KOG3783|consen 466 EVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDYE 525 (546)
T ss_pred HHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccccc
Confidence 44556665555221 1 248999999999999999 9999999999998875543
No 409
>KOG2518 consensus 5'-3' exonuclease [Replication, recombination and repair]
Probab=56.87 E-value=19 Score=24.29 Aligned_cols=31 Identities=13% Similarity=0.134 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 038754 22 TYAGLAYTYHLQDNFSAAITYYHKALWLKPD 52 (79)
Q Consensus 22 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 52 (79)
.-...|..+...|+..+|..+|++++.+.|.
T Consensus 98 ~n~~~a~~ll~~G~~~~A~~~fqr~VdIT~~ 128 (556)
T KOG2518|consen 98 KNLDAAEQLLAEGKESNARECFQRCVDITPE 128 (556)
T ss_pred HhHHHHHHHHHcCCHHHHHHHHHHhccCcHH
Confidence 4456777888999999999999999999985
No 410
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.39 E-value=67 Score=23.29 Aligned_cols=30 Identities=13% Similarity=0.113 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 038754 21 STYAGLAYTYHLQDNFSAAITYYHKALWLK 50 (79)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 50 (79)
.-+..++..|...|++++|++.+.+...-+
T Consensus 505 ~~y~~Li~LY~~kg~h~~AL~ll~~l~d~~ 534 (877)
T KOG2063|consen 505 KKYRELIELYATKGMHEKALQLLRDLVDED 534 (877)
T ss_pred ccHHHHHHHHHhccchHHHHHHHHHHhccc
Confidence 346789999999999999999999999844
No 411
>PRK15326 type III secretion system needle complex protein PrgI; Provisional
Probab=55.29 E-value=26 Score=17.42 Aligned_cols=16 Identities=31% Similarity=0.287 Sum_probs=7.2
Q ss_pred HHHHHHHHHccCCCCH
Q 038754 39 AITYYHKALWLKPDDQ 54 (79)
Q Consensus 39 A~~~~~~al~~~p~~~ 54 (79)
++..-.+.++.+|+||
T Consensus 26 ~l~~Al~~l~~~pdnP 41 (80)
T PRK15326 26 QVTEALDKLAAKPSDP 41 (80)
T ss_pred HHHHHHHHhhcCCCCH
Confidence 3333334444555555
No 412
>KOG2460 consensus Signal recognition particle, subunit Srp68 [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.79 E-value=17 Score=24.59 Aligned_cols=28 Identities=21% Similarity=0.357 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 038754 22 TYAGLAYTYHLQDNFSAAITYYHKALWL 49 (79)
Q Consensus 22 ~~~~~~~~~~~~~~~~~A~~~~~~al~~ 49 (79)
-.+.++..|...++|.+|+..|.++...
T Consensus 424 RC~~iA~sY~a~~K~~EAlALy~Ra~sy 451 (593)
T KOG2460|consen 424 RCFYIAVSYQAKKKYSEALALYVRAYSY 451 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888999999999999999998864
No 413
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=54.73 E-value=60 Score=21.48 Aligned_cols=30 Identities=17% Similarity=0.135 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 038754 20 LSTYAGLAYTYHLQDNFSAAITYYHKALWL 49 (79)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 49 (79)
-.++.-+|..|...|+.+.|+++|-++-..
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdY 179 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDY 179 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhh
Confidence 357888999999999999999999885543
No 414
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=53.85 E-value=56 Score=20.89 Aligned_cols=50 Identities=24% Similarity=0.218 Sum_probs=35.6
Q ss_pred CHHHHHHHHHHHHhhCCCCH--HHHHHH--HHHHHHcCCHHHHHHHHHHHHccC
Q 038754 1 IYHEAISCYERALTLLNRSL--STYAGL--AYTYHLQDNFSAAITYYHKALWLK 50 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~A~~~~~~al~~~ 50 (79)
+|..|...++.+.+.-|.+. ..+..+ |..+...-++++|...++..+...
T Consensus 146 ~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~ 199 (379)
T PF09670_consen 146 DYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRD 199 (379)
T ss_pred CHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 47888999998888633332 344444 444578889999999999888753
No 415
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=53.76 E-value=58 Score=20.98 Aligned_cols=30 Identities=13% Similarity=-0.056 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 038754 20 LSTYAGLAYTYHLQDNFSAAITYYHKALWL 49 (79)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 49 (79)
..++.+.|.-|.+.|+.+.|.+++.+...-
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~k 133 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEK 133 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 689999999999999999999998887754
No 416
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=53.50 E-value=34 Score=18.26 Aligned_cols=32 Identities=6% Similarity=0.034 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 038754 20 LSTYAGLAYTYHLQDNFSAAITYYHKALWLKP 51 (79)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 51 (79)
...+..+..+|...|++..|+...+...+..|
T Consensus 52 ~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~ 83 (126)
T PF12921_consen 52 SRLLIAIVHSFGYNGDIFSALKLVDFFSRKYP 83 (126)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHcC
Confidence 57889999999999999999999999988776
No 417
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=53.25 E-value=13 Score=26.04 Aligned_cols=43 Identities=26% Similarity=0.243 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 038754 2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKAL 47 (79)
Q Consensus 2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 47 (79)
|++|.+..++--+.. +..|+-.|..+....++.+|.+.|.+|=
T Consensus 789 W~eAFalAe~hPe~~---~dVy~pyaqwLAE~DrFeEAqkAfhkAG 831 (1081)
T KOG1538|consen 789 WDEAFALAEKHPEFK---DDVYMPYAQWLAENDRFEEAQKAFHKAG 831 (1081)
T ss_pred chHhHhhhhhCcccc---ccccchHHHHhhhhhhHHHHHHHHHHhc
Confidence 445554443332222 4567777777777777777777776653
No 418
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=51.53 E-value=50 Score=19.60 Aligned_cols=46 Identities=15% Similarity=0.030 Sum_probs=33.3
Q ss_pred CHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 038754 1 IYHEAISCYERALTLLNR------SLSTYAGLAYTYHLQDNFSAAITYYHKA 46 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~A~~~~~~a 46 (79)
+|++|+.+++.+...-.. ...++..+..|+...|+.+..+...-+.
T Consensus 193 ~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 193 DYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred CHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 578889998888654322 2567778888999999998877765433
No 419
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=51.21 E-value=93 Score=23.24 Aligned_cols=30 Identities=20% Similarity=0.201 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 038754 20 LSTYAGLAYTYHLQDNFSAAITYYHKALWL 49 (79)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 49 (79)
....-.+|..+...|++.+|+..|..|+.+
T Consensus 242 gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~ 271 (1185)
T PF08626_consen 242 GRLQKVLGDLYLLAGRWPDALKEYTEAIEI 271 (1185)
T ss_pred hhhhhhhhhHHHHcCCHHHHHHHHHHHHHH
Confidence 456677899999999999999999999976
No 420
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=50.89 E-value=65 Score=23.71 Aligned_cols=27 Identities=33% Similarity=0.476 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 038754 20 LSTYAGLAYTYHLQDNFSAAITYYHKA 46 (79)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~A~~~~~~a 46 (79)
...|++++.-+...++.+.|+++|+++
T Consensus 858 r~Tyy~yA~~Lear~Di~~AleyyEK~ 884 (1416)
T KOG3617|consen 858 RNTYYNYAKYLEARRDIEAALEYYEKA 884 (1416)
T ss_pred hhhHHHHHHHHHhhccHHHHHHHHHhc
Confidence 468889999999999999999999875
No 421
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=50.66 E-value=80 Score=21.73 Aligned_cols=46 Identities=13% Similarity=-0.034 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 038754 2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPD 52 (79)
Q Consensus 2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 52 (79)
.++|-++|+..+..+|+ ..++.++.-+.+.|-...|...++ ++.|.
T Consensus 58 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 103 (578)
T PRK15490 58 TERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLILK---KVSNG 103 (578)
T ss_pred hHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHHH---HhCcc
Confidence 46788999999999998 778888888899998888887776 45554
No 422
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=50.45 E-value=26 Score=26.11 Aligned_cols=45 Identities=20% Similarity=0.103 Sum_probs=36.4
Q ss_pred HHHHHH-HHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 038754 5 AISCYE-RALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWL 49 (79)
Q Consensus 5 A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 49 (79)
++..+. ..-.++|..+.++..++..+.+++++.+|+.+-.++.-+
T Consensus 957 slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii 1002 (1236)
T KOG1839|consen 957 SLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACII 1002 (1236)
T ss_pred hhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceee
Confidence 334554 444567888999999999999999999999998888765
No 423
>KOG2162 consensus Nonsense-mediated mRNA decay protein [RNA processing and modification]
Probab=49.96 E-value=63 Score=23.33 Aligned_cols=65 Identities=14% Similarity=0.076 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH
Q 038754 2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVD 66 (79)
Q Consensus 2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 66 (79)
|..+..+|.++..+.|.....+..+|.+......--.+.-+|-+.+..--.++.+..++..+...
T Consensus 151 ~~~~~~~y~ea~~~~p~~g~p~~ql~~l~~~~~~~~~~~y~~~~~l~~~~~f~~a~~Nl~~~f~k 215 (862)
T KOG2162|consen 151 WESGSPYYLEAASLYPQSGMPHNQLGILANYKNDEFLSTYHYLRSLLVEISFKGASENLKKLFDK 215 (862)
T ss_pred hhhcChHHHHHHHhccccCChHHHHHHHhhhhhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHH
Confidence 45667888899999999988888888886655555555656666665555666777777666554
No 424
>PF15469 Sec5: Exocyst complex component Sec5
Probab=49.80 E-value=23 Score=19.88 Aligned_cols=22 Identities=27% Similarity=0.264 Sum_probs=18.5
Q ss_pred HHHcCCHHHHHHHHHHHHccCC
Q 038754 30 YHLQDNFSAAITYYHKALWLKP 51 (79)
Q Consensus 30 ~~~~~~~~~A~~~~~~al~~~p 51 (79)
+...|+|+.++..|.++..+--
T Consensus 96 ~i~~~dy~~~i~dY~kak~l~~ 117 (182)
T PF15469_consen 96 CIKKGDYDQAINDYKKAKSLFE 117 (182)
T ss_pred HHHcCcHHHHHHHHHHHHHHHH
Confidence 3578999999999999988743
No 425
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=49.40 E-value=70 Score=20.66 Aligned_cols=44 Identities=23% Similarity=0.167 Sum_probs=31.7
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH--HHccCCCC
Q 038754 10 ERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHK--ALWLKPDD 53 (79)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~--al~~~p~~ 53 (79)
++-....|+...+++.++...+..|+|..|-.++-. ++-.+|+.
T Consensus 119 ~e~ynf~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~ 164 (432)
T KOG2758|consen 119 QEHYNFTPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDR 164 (432)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcch
Confidence 333445567789999999999999999999887443 44444443
No 426
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=49.40 E-value=82 Score=21.43 Aligned_cols=51 Identities=27% Similarity=0.277 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHhhC-CC---CHHHHHHHHHHHH-HcCCHHHHHHHHHHHHccCCCC
Q 038754 3 HEAISCYERALTLL-NR---SLSTYAGLAYTYH-LQDNFSAAITYYHKALWLKPDD 53 (79)
Q Consensus 3 ~~A~~~~~~~~~~~-~~---~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~p~~ 53 (79)
..|+.|++-+++.- +. ...+++.+|.+++ .+.+++.|..++.+++.+..++
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~ 93 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERH 93 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 45788888888422 21 4678999999986 9999999999999998886443
No 427
>COG5600 Transcription-associated recombination protein [DNA replication, recombination, and repair]
Probab=48.97 E-value=27 Score=22.63 Aligned_cols=33 Identities=24% Similarity=0.204 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 038754 20 LSTYAGLAYTYHLQDNFSAAITYYHKALWLKPD 52 (79)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 52 (79)
...+|-+|.+|..+.++.+|...+..|+..=|.
T Consensus 220 v~f~YYLG~~~l~~en~heA~~~L~~aFl~c~~ 252 (413)
T COG5600 220 VVFHYYLGIYYLLNENFHEAFLHLNEAFLQCPW 252 (413)
T ss_pred eehhhHHHHHHHHHHhHHHHHHHHHHHHHhChh
Confidence 356788999999999999999999999988775
No 428
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=48.05 E-value=65 Score=19.89 Aligned_cols=37 Identities=14% Similarity=0.144 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q 038754 2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSA 38 (79)
Q Consensus 2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 38 (79)
.+.|...+.+++.++|+.+.+...+-.+-..+|++.-
T Consensus 115 ~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fgeP~W 151 (277)
T PF13226_consen 115 CDQAVAALLKAIELSPRPVAAAIGMINISAYFGEPDW 151 (277)
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcCCchH
Confidence 3678899999999999999999998888888888764
No 429
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=47.55 E-value=59 Score=26.25 Aligned_cols=26 Identities=19% Similarity=0.383 Sum_probs=18.8
Q ss_pred HHHHcCCHHHHHHHHHHHHccCCCCH
Q 038754 29 TYHLQDNFSAAITYYHKALWLKPDDQ 54 (79)
Q Consensus 29 ~~~~~~~~~~A~~~~~~al~~~p~~~ 54 (79)
.....|+++.|..+|+++++.+|+.+
T Consensus 1458 ~~e~~g~~~da~~Cye~~~q~~p~~~ 1483 (2382)
T KOG0890|consen 1458 EHEASGNWADAAACYERLIQKDPDKE 1483 (2382)
T ss_pred HHHhhccHHHHHHHHHHhhcCCCccc
Confidence 34566777788888888888777754
No 430
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=47.04 E-value=74 Score=20.29 Aligned_cols=31 Identities=6% Similarity=0.041 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 038754 20 LSTYAGLAYTYHLQDNFSAAITYYHKALWLK 50 (79)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 50 (79)
..++.++|..|.+.++.+.+.++..+.++-.
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a 145 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDA 145 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 6899999999999999999999998887643
No 431
>COG2764 PhnB Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.92 E-value=24 Score=19.27 Aligned_cols=15 Identities=20% Similarity=0.445 Sum_probs=13.3
Q ss_pred CCHHHHHHHHHHHHc
Q 038754 34 DNFSAAITYYHKALW 48 (79)
Q Consensus 34 ~~~~~A~~~~~~al~ 48 (79)
|+-++|+.+|++++.
T Consensus 10 gn~~~Al~fY~~vFg 24 (136)
T COG2764 10 GNAREALAFYKEVFG 24 (136)
T ss_pred CCHHHHHHHHHHHhC
Confidence 688999999999985
No 432
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=45.81 E-value=83 Score=20.52 Aligned_cols=31 Identities=13% Similarity=0.022 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 038754 21 STYAGLAYTYHLQDNFSAAITYYHKALWLKP 51 (79)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 51 (79)
.....++.|..++|+.++|++.++...+--|
T Consensus 276 YIKRRLAMCARklGrlrEA~K~~RDL~ke~p 306 (556)
T KOG3807|consen 276 YIKRRLAMCARKLGRLREAVKIMRDLMKEFP 306 (556)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 3556789999999999999999999888776
No 433
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=44.69 E-value=54 Score=22.53 Aligned_cols=39 Identities=21% Similarity=0.260 Sum_probs=32.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH
Q 038754 28 YTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVD 66 (79)
Q Consensus 28 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 66 (79)
.-|....++.+|++.....++.|..+.+++..+...+..
T Consensus 213 ~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd 251 (711)
T COG1747 213 KKYSENENWTEAIRILKHILEHDEKDVWARKEIIENLRD 251 (711)
T ss_pred HHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHH
Confidence 345678899999999999999999999998887766665
No 434
>cd09247 BRO1_Alix_like_2 Protein-interacting Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro1 function in
Probab=43.57 E-value=59 Score=20.47 Aligned_cols=30 Identities=17% Similarity=0.057 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 038754 20 LSTYAGLAYTYHLQDNFSAAITYYHKALWL 49 (79)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 49 (79)
..+++..|......+++.+|+.+++.+...
T Consensus 253 A~A~~~~a~~~~~~~k~GeaIa~L~~A~~~ 282 (346)
T cd09247 253 ARSQLYLARRLKEAGHIGVAVGVLREALRN 282 (346)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 446677777777888999999999988773
No 435
>PF08969 USP8_dimer: USP8 dimerisation domain; InterPro: IPR015063 This domain is predominantly found in the amino terminal region of Ubiquitin carboxyl-terminal hydrolase 8 (USP8). It has no known function. ; PDB: 2XZE_B 2A9U_A.
Probab=43.48 E-value=49 Score=17.15 Aligned_cols=30 Identities=20% Similarity=0.163 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 038754 20 LSTYAGLAYTYHLQDNFSAAITYYHKALWL 49 (79)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 49 (79)
+..++..|..|...|+.+.|--.|-+.+.+
T Consensus 38 a~~l~~~A~~~~~egd~E~AYvl~~R~~~L 67 (115)
T PF08969_consen 38 ANKLLREAEEYRQEGDEEQAYVLYMRYLTL 67 (115)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 456677888999999999999988888765
No 436
>COG1447 CelC Phosphotransferase system cellobiose-specific component IIA [Carbohydrate transport and metabolism]
Probab=42.74 E-value=52 Score=17.26 Aligned_cols=34 Identities=18% Similarity=-0.003 Sum_probs=26.2
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 038754 15 LLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALW 48 (79)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 48 (79)
+...++.....-|.-+.+.|++++|......+-.
T Consensus 14 ~~aG~ArS~~~eAl~~Ak~g~f~~A~~~i~eA~~ 47 (105)
T COG1447 14 LHAGNARSKAYEALKAAKEGDFEEAEELIQEAND 47 (105)
T ss_pred HHcccHhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455677777788888999999999888776643
No 437
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=42.26 E-value=22 Score=23.53 Aligned_cols=27 Identities=15% Similarity=0.348 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 038754 22 TYAGLAYTYHLQDNFSAAITYYHKALW 48 (79)
Q Consensus 22 ~~~~~~~~~~~~~~~~~A~~~~~~al~ 48 (79)
+-+..|.+|..++++.+|+..|-.+|.
T Consensus 274 VTY~VGFayLmmrryadai~~F~niLl 300 (525)
T KOG3677|consen 274 VTYQVGFAYLMMRRYADAIRVFLNILL 300 (525)
T ss_pred EeeehhHHHHHHHHHHHHHHHHHHHHH
Confidence 447789999999999999999887765
No 438
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.29 E-value=1.1e+02 Score=23.19 Aligned_cols=29 Identities=24% Similarity=0.172 Sum_probs=24.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 038754 18 RSLSTYAGLAYTYHLQDNFSAAITYYHKA 46 (79)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 46 (79)
+.|..|..+|.+-.+.|...+|++.|-++
T Consensus 1102 n~p~vWsqlakAQL~~~~v~dAieSyika 1130 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIKA 1130 (1666)
T ss_pred CChHHHHHHHHHHHhcCchHHHHHHHHhc
Confidence 46889999999999999999999988544
No 439
>PF02255 PTS_IIA: PTS system, Lactose/Cellobiose specific IIA subunit; InterPro: IPR003188 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIA PTS system enzymes. This family of proteins normally function as a homotrimer, stabilised by a centrally located metal ion []. Separation into subunits is thought to occur after phosphorylation.; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3L8R_D 2E2A_B 1E2A_C 3K1S_C 2LRK_C 2LRL_A 2WY2_A 1WCR_A 2WWV_C.
Probab=41.07 E-value=52 Score=16.76 Aligned_cols=30 Identities=17% Similarity=0.010 Sum_probs=21.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 038754 19 SLSTYAGLAYTYHLQDNFSAAITYYHKALW 48 (79)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 48 (79)
++...+.-|.-..+.|++++|...++++-+
T Consensus 13 ~Ars~~~eAl~~a~~~~fe~A~~~l~~a~~ 42 (96)
T PF02255_consen 13 DARSLAMEALKAAREGDFEEAEELLKEADE 42 (96)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 345556666777889999998888877754
No 440
>TIGR00823 EIIA-LAC phosphotransferase system enzyme II, lactose-specific, factor III. operon. While the Lac permeases consist of two polypeptide chains (IIA and IICB), the Chb permease of E. coli consists of three (IIA, IIB and IIC). In B. subtilis, a PTS permease similar to the Chb permease of E. coli is believed to transport lichenan (a b-1,3;1,4 glucan) degradation products, oligosaccharides of 2-4 glucose units. This model is specific for the IIA subunit of the Lac PTS family.
Probab=41.06 E-value=53 Score=16.88 Aligned_cols=31 Identities=16% Similarity=-0.016 Sum_probs=23.6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 038754 18 RSLSTYAGLAYTYHLQDNFSAAITYYHKALW 48 (79)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 48 (79)
.++...+.-|.-..+.|++++|...++.+-+
T Consensus 15 G~Ars~~~eAl~~a~~gdfe~A~~~l~eA~~ 45 (99)
T TIGR00823 15 GDARSKALEALKAAKAGDFAKARALVEQAGM 45 (99)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3556666677777899999999888877754
No 441
>PRK11619 lytic murein transglycosylase; Provisional
Probab=40.78 E-value=1.2e+02 Score=21.04 Aligned_cols=32 Identities=9% Similarity=-0.218 Sum_probs=25.9
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 038754 17 NRSLSTYAGLAYTYHLQDNFSAAITYYHKALW 48 (79)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 48 (79)
.......|=+|.++..+|+..+|...|+++..
T Consensus 343 ~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 343 KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 34566777788888889999999999999854
No 442
>cd00215 PTS_IIA_lac PTS_IIA, PTS system, lactose/cellobiose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. This family of proteins normally function as a homotrimer, stabilized by a centrally located metal ion. Separation into subunits is thought to occur after phosphorylation.
Probab=40.76 E-value=53 Score=16.81 Aligned_cols=31 Identities=16% Similarity=-0.019 Sum_probs=23.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 038754 18 RSLSTYAGLAYTYHLQDNFSAAITYYHKALW 48 (79)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 48 (79)
.++..++.-|.-..+.|++++|...++++-+
T Consensus 13 G~Ars~~~eAl~~a~~g~fe~A~~~l~ea~~ 43 (97)
T cd00215 13 GNARSKALEALKAAKEGDFAEAEELLEEAND 43 (97)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455566666777899999999888877754
No 443
>PF12455 Dynactin: Dynein associated protein ; InterPro: IPR022157 This domain family is found in eukaryotes, and is approximately 280 amino acids in length. The family is found in association with PF01302 from PFAM. There is a single completely conserved residue E that may be functionally important. Dynactin has been associated with Dynein, a kinesin protein which is involved in organelle transport, mitotic spindle assembly and chromosome segregation. Dynactin anchors Dynein to specific subcellular structures.
Probab=40.52 E-value=86 Score=19.17 Aligned_cols=36 Identities=11% Similarity=0.082 Sum_probs=32.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 038754 16 LNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKP 51 (79)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 51 (79)
+.-+++.+..+|.+|..+.-.+.++..|-.+++-|-
T Consensus 143 ~~Cs~E~f~k~g~~~~Em~~~Er~lD~~IdlLk~d~ 178 (274)
T PF12455_consen 143 SRCSVEQFLKMGGLYPEMEPVERALDSWIDLLKKDQ 178 (274)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 345899999999999999999999999999998765
No 444
>cd08977 SusD starch binding outer membrane protein SusD. SusD-like proteins from Bacteroidetes, members of the human distal gut microbiota, are part of the starch utilization system (Sus). Sus is one of the large clusters of glycosyl hydrolases, called polysaccharide utilization loci (PULs), which play an important role in polysaccharide recognition and uptake, and it is needed for growth on amylose, amylopectin, pullulan, and maltooligosaccharides. SusD, together with SusC, a predicted beta-barrel porin, forms the minimum outer-membrane starch-binding complex. The adult human distal gut microbiota is essential for digestion of a large variety of dietary polysaccharides, for which humans lack the necessary glycosyl hydrolases.
Probab=40.10 E-value=86 Score=19.45 Aligned_cols=32 Identities=16% Similarity=-0.064 Sum_probs=27.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 038754 19 SLSTYAGLAYTYHLQDNFSAAITYYHKALWLK 50 (79)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 50 (79)
.++.++..|.++.+.|...+|...+.++.+..
T Consensus 285 ~aEv~L~~AEA~~~~~~~~~A~~~in~vr~ra 316 (359)
T cd08977 285 YAEVLLLRAEALARLGNGADAIEYLNAVRRRS 316 (359)
T ss_pred HHHHHHHHHHHHHHhCChHHHHHHHHHHHHhc
Confidence 36889999999999999999999999888654
No 445
>cd09034 BRO1_Alix_like Protein-interacting Bro1-like domain of mammalian Alix and related domains. This superfamily includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1 and Rim20 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to
Probab=39.46 E-value=76 Score=19.71 Aligned_cols=29 Identities=17% Similarity=0.088 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 038754 20 LSTYAGLAYTYHLQDNFSAAITYYHKALW 48 (79)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 48 (79)
..+++..|..+...+++.+|+.+++.|..
T Consensus 251 a~a~~~~a~~~~e~~~~G~aia~L~~A~~ 279 (345)
T cd09034 251 ALAYYYHGLKLDEANKIGEAIARLQAALE 279 (345)
T ss_pred HHHHHHHHHHhhccccHHHHHHHHHHHHH
Confidence 34666677777777788888888887765
No 446
>PF05131 Pep3_Vps18: Pep3/Vps18/deep orange family; InterPro: IPR007810 This region is found in a number of proteins identified as being involved in Golgi function and vacuolar sorting. The molecular function of this region is unknown. Proteins containing this domain also contain a C-terminal ring finger domain.
Probab=39.40 E-value=21 Score=19.71 Aligned_cols=24 Identities=17% Similarity=0.400 Sum_probs=17.2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 038754 18 RSLSTYAGLAYTYHLQDNFSAAITYYHK 45 (79)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 45 (79)
.+-.+|. .|..+|+|++|+++.+.
T Consensus 105 E~r~vWk----~yl~~~~fd~Al~~~~~ 128 (147)
T PF05131_consen 105 EDRDVWK----IYLDKGDFDEALQYCKT 128 (147)
T ss_pred chHHHHH----HHHhcCcHHHHHHHccC
Confidence 3455665 46788999999987754
No 447
>PRK09591 celC cellobiose phosphotransferase system IIA component; Reviewed
Probab=39.24 E-value=59 Score=16.89 Aligned_cols=31 Identities=16% Similarity=0.030 Sum_probs=23.7
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 038754 18 RSLSTYAGLAYTYHLQDNFSAAITYYHKALW 48 (79)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 48 (79)
.++...+.-|.-..+.|++++|...++++-+
T Consensus 18 G~Ars~~~eAl~~ak~gdf~~A~~~l~eA~~ 48 (104)
T PRK09591 18 GNARTEVHEAFAAMREGNFDLAEQKLNQSNE 48 (104)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3456666667777899999999988887755
No 448
>cd09245 BRO1_UmRIM23-like Protein-interacting, Bro1-like domain of Ustilago maydis Rim23 (PalC), and related domains. This family contains the Bro1-like domain of Ustilago maydis Rim23 (also known as PalC), and related proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Through its Bro1-like domain, Rim23 allows the interaction between the endosomal and plasma membrane complexes. Bro1-like domains are boomerang-shape, and part of the domain is a tetratricop
Probab=38.56 E-value=91 Score=20.37 Aligned_cols=30 Identities=13% Similarity=-0.061 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 038754 20 LSTYAGLAYTYHLQDNFSAAITYYHKALWL 49 (79)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 49 (79)
..+++.+|......+++.+|+.+++.+...
T Consensus 296 A~A~~~~g~d~~e~~k~GeaIa~L~~A~~~ 325 (413)
T cd09245 296 ALACKFLGIDAGENGKVGEAIGWLRAAKKE 325 (413)
T ss_pred HHHHHHHHHhhHhcCCHHHHHHHHHHHHHH
Confidence 456677777777888999999999988873
No 449
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=38.27 E-value=94 Score=19.54 Aligned_cols=33 Identities=21% Similarity=0.118 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhh
Q 038754 36 FSAAITYYHKALWLKPDDQFCTEMLSLALVDEG 68 (79)
Q Consensus 36 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 68 (79)
.-+|+..++.++..+|.|......+..++...|
T Consensus 199 l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG 231 (365)
T PF09797_consen 199 LLQAIALLEHALKKSPHNYQLKLLLVRLYSLLG 231 (365)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcC
Confidence 445888899999999999988888777776654
No 450
>PRK10148 hypothetical protein; Provisional
Probab=38.21 E-value=37 Score=18.48 Aligned_cols=16 Identities=38% Similarity=0.617 Sum_probs=14.0
Q ss_pred cCCHHHHHHHHHHHHc
Q 038754 33 QDNFSAAITYYHKALW 48 (79)
Q Consensus 33 ~~~~~~A~~~~~~al~ 48 (79)
.|+-++|+++|.+++.
T Consensus 10 ~g~a~eAi~FY~~~Fg 25 (147)
T PRK10148 10 AGNCADAIAYYQQTLG 25 (147)
T ss_pred CCCHHHHHHHHHHHhC
Confidence 3788999999999985
No 451
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=38.10 E-value=1.6e+02 Score=21.56 Aligned_cols=50 Identities=18% Similarity=0.161 Sum_probs=42.3
Q ss_pred CHHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 038754 1 IYHEAISCYERALTLLNRS-----LSTYAGLAYTYHLQDNFSAAITYYHKALWLK 50 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 50 (79)
+++.|++..+.++..-|.+ ..++...|.+..-.|++.+|..+...+.++.
T Consensus 473 ~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a 527 (894)
T COG2909 473 DPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMA 527 (894)
T ss_pred CHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHH
Confidence 4678888888888887754 5688899999999999999999999988873
No 452
>PF04652 DUF605: Vta1 like; InterPro: IPR006745 This family contains proteins from the Eukaryota; functionally they are uncharacterised.; PDB: 2RKK_B 2RKL_B 3MHV_A.
Probab=38.09 E-value=58 Score=20.53 Aligned_cols=29 Identities=28% Similarity=0.170 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 038754 21 STYAGLAYTYHLQDNFSAAITYYHKALWL 49 (79)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 49 (79)
.-+..+|.......|+..|++.+++||++
T Consensus 350 QK~aK~AiSAL~feDv~tA~~~L~~AL~l 378 (380)
T PF04652_consen 350 QKHAKFAISALNFEDVPTAIKELRKALEL 378 (380)
T ss_dssp HHHHHHHHHHHTTT-HHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccc
Confidence 34455566666777888888888887764
No 453
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=38.03 E-value=1.5e+02 Score=21.19 Aligned_cols=48 Identities=17% Similarity=0.284 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 038754 4 EAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKP 51 (79)
Q Consensus 4 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 51 (79)
.--.+|++++..-.+-|..|..++..+..+|+...-...|.+||.--|
T Consensus 86 ~vn~c~er~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLp 133 (835)
T KOG2047|consen 86 SVNNCFERCLVFMHKMPRIWLDYLQFLIKQGLITRTRRTFDRALRALP 133 (835)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCc
Confidence 344566666665556677777777777777777666666666665544
No 454
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=37.98 E-value=82 Score=20.36 Aligned_cols=31 Identities=13% Similarity=-0.004 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 038754 21 STYAGLAYTYHLQDNFSAAITYYHKALWLKP 51 (79)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 51 (79)
.....+|+.++.+++|+-|...|+.+.+---
T Consensus 209 ~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~ 239 (414)
T PF12739_consen 209 AQMRRLADLAFMLRDYELAYSTYRLLKKDFK 239 (414)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHHHh
Confidence 3566799999999999999999998887443
No 455
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=37.94 E-value=68 Score=17.24 Aligned_cols=25 Identities=16% Similarity=0.146 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHH
Q 038754 20 LSTYAGLAYTYHLQDNFSAAITYYH 44 (79)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~A~~~~~ 44 (79)
+..|-..|..+-..|++.+|...|+
T Consensus 99 AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 99 ALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3344444455555555555555543
No 456
>KOG4459 consensus Membrane-associated proteoglycan Leprecan [Function unknown]
Probab=37.74 E-value=72 Score=21.30 Aligned_cols=43 Identities=23% Similarity=0.312 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHH
Q 038754 22 TYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLAL 64 (79)
Q Consensus 22 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 64 (79)
.+.-+=.+|++.|+...|++.-.-.+.-+|++..+..++..-.
T Consensus 135 py~YL~~ay~k~~~l~kAv~aa~tflv~~Pdde~ik~~ldyYq 177 (471)
T KOG4459|consen 135 PYQYLQFAYFKVGELEKAVAAAHTFLVANPDDEDIKQNLDYYQ 177 (471)
T ss_pred HHHHHHHHHHHhhhHHHHHHhcceeeecCCcHHHHHHHHHHHH
Confidence 4445567899999999999999999999999987776665544
No 457
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=37.48 E-value=1.1e+02 Score=26.01 Aligned_cols=51 Identities=8% Similarity=-0.085 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhhc
Q 038754 20 LSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGRH 70 (79)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 70 (79)
+..+...|....+.|+.++|-..|..|++++-.-+.+|..++.-+...-..
T Consensus 2812 aeff~lkG~f~~kL~~~eeAn~~fs~AvQi~~~l~KaW~~Wg~y~~~~f~~ 2862 (3550)
T KOG0889|consen 2812 AEFFTLKGMFLEKLGKFEEANKAFSAAVQIDDGLGKAWAEWGKYLDNRFNK 2862 (3550)
T ss_pred HHHHHhhhHHHHHhcCcchhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhc
Confidence 567888999999999999999999999999988888888887776655333
No 458
>cd09242 BRO1_ScBro1_like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Rim20 (also known as PalA), Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1 participates in endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: Snf7 in the
Probab=37.30 E-value=89 Score=19.72 Aligned_cols=28 Identities=18% Similarity=0.108 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 038754 21 STYAGLAYTYHLQDNFSAAITYYHKALW 48 (79)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~A~~~~~~al~ 48 (79)
.+++..|......+++.+|+..++.+..
T Consensus 245 ~A~y~~a~~~~~~~k~GeaIa~L~~A~~ 272 (348)
T cd09242 245 LAAYYHALALEAAGKYGEAIAYLTQAES 272 (348)
T ss_pred HHHHHHHHHhHHhccHHHHHHHHHHHHH
Confidence 3455566666667788888888887765
No 459
>TIGR02757 conserved hypothetical protein TIGR02757. Members of this uncharacterized protein family are found sporadically, so far only among spirochetes, epsilon and delta proteobacteria, and Bacteroides. The function is unknown and its gene neighborhoods show little conservation.
Probab=36.46 E-value=19 Score=21.48 Aligned_cols=34 Identities=21% Similarity=0.138 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH
Q 038754 21 STYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQ 54 (79)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 54 (79)
..-..+|.+-.++.++..|++.=+..-+++|+||
T Consensus 182 rvar~LgL~~Rk~~d~kaa~ElT~~Lr~~dp~DP 215 (229)
T TIGR02757 182 RIAKKLKLLKRKSYDLKAAIEITEALRELNPEDP 215 (229)
T ss_pred HHHHHhCCcccCchhHHHHHHHHHHHHhcCCCCC
Confidence 3445677777888889999998888889999998
No 460
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=36.37 E-value=1.5e+02 Score=20.58 Aligned_cols=50 Identities=10% Similarity=0.048 Sum_probs=31.5
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH
Q 038754 5 AISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQ 54 (79)
Q Consensus 5 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 54 (79)
+...|+..+..-|--...|-..|..-.+.|..+.+...|++++.--|-..
T Consensus 64 ~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~Sv 113 (577)
T KOG1258|consen 64 LREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSV 113 (577)
T ss_pred HHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHH
Confidence 34445555555565556666677777777777777777777776555443
No 461
>cd06588 PhnB_like Escherichia coli PhnB and similar proteins; the E. coli phnB gene is found next to an operon involved in the cleavage of carbon-phosphorus bonds in unactivated alkylphosphonates. The Escherichia coli phnB gene is found next to an operon of fourteen genes (phnC-to-phnP) related to the cleavage of carbon-phosphorus (C-P) bonds in unactivated alkylphosphonates, supporting bacterial growth on alkylphosphonates as the sole phosphorus source. It was originally considered part of that operon. PhnB appears to play no direct catalytic role in the usage of alkylphosphonate. Although many of the proteins in this family have been annotated as 3-demethylubiquinone-9 3-methyltransferase enzymes by automatic annotation programs, the experimental evidence for this assignment is lacking. In Escherichia coli, the gene coding 3-demethylubiquinone-9 3-methyltransferase enzyme is ubiG, which belongs to the AdoMet-MTase protein family. PhnB-like proteins adopt a structural fold similar to
Probab=36.32 E-value=42 Score=17.36 Aligned_cols=15 Identities=20% Similarity=0.428 Sum_probs=13.3
Q ss_pred CCHHHHHHHHHHHHc
Q 038754 34 DNFSAAITYYHKALW 48 (79)
Q Consensus 34 ~~~~~A~~~~~~al~ 48 (79)
++.++|+.+|++++.
T Consensus 9 ~~~~eAi~FY~~~fg 23 (128)
T cd06588 9 GNAEEALEFYQSVFG 23 (128)
T ss_pred CCHHHHHHHHHHHhC
Confidence 888999999999884
No 462
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=36.31 E-value=1.1e+02 Score=19.29 Aligned_cols=50 Identities=10% Similarity=0.097 Sum_probs=37.3
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHccCCCCH
Q 038754 5 AISCYERALTLLNRSLSTYAGLAYTYHLQ--DNFSAAITYYHKALWLKPDDQ 54 (79)
Q Consensus 5 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~A~~~~~~al~~~p~~~ 54 (79)
-+.++..+++-+|++...|...-.++... ..+..-+..-++.+..||.|.
T Consensus 93 eld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNy 144 (328)
T COG5536 93 ELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNY 144 (328)
T ss_pred HHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhccccccc
Confidence 35667888888888888888887777655 556666667777788887765
No 463
>cd09243 BRO1_Brox_like Protein-interacting Bro1-like domain of human Brox1 and related proteins. This family contains the Bro1-like domain of a single-domain protein, human Brox, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: CHMP4 in the case of Brox. Human Brox can bind to human immunodeficiency virus type 1 (
Probab=36.18 E-value=95 Score=19.85 Aligned_cols=29 Identities=17% Similarity=0.062 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 038754 20 LSTYAGLAYTYHLQDNFSAAITYYHKALW 48 (79)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 48 (79)
+.+++..|......+++.+|+..++.+..
T Consensus 248 A~A~y~~a~~l~e~~k~GeaIa~L~~A~~ 276 (353)
T cd09243 248 AYAYCYHGETLLAKDKCGEAIRSLQESEK 276 (353)
T ss_pred HHHHHHHHHHhHhcchHHHHHHHHHHHHH
Confidence 34666677777777788888887777664
No 464
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=35.21 E-value=1.4e+02 Score=20.00 Aligned_cols=29 Identities=17% Similarity=0.095 Sum_probs=18.7
Q ss_pred HHcCCHHHHHHHHHHHHccCCCCHHHHHH
Q 038754 31 HLQDNFSAAITYYHKALWLKPDDQFCTEM 59 (79)
Q Consensus 31 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 59 (79)
...|+.+.|+.+-+.+-..-|.-++++..
T Consensus 165 qr~GareaAr~yAe~Aa~~Ap~l~WA~~A 193 (531)
T COG3898 165 QRLGAREAARHYAERAAEKAPQLPWAARA 193 (531)
T ss_pred HhcccHHHHHHHHHHHHhhccCCchHHHH
Confidence 45666677777777777777766655443
No 465
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=34.96 E-value=1.9e+02 Score=21.49 Aligned_cols=53 Identities=11% Similarity=0.070 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH
Q 038754 2 YHEAISCYERALTLL--NRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQ 54 (79)
Q Consensus 2 ~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 54 (79)
+.+++..|+.+.... ......|-.++..+...+.+.+|...|+..++..-.+.
T Consensus 94 ~~d~~d~f~~m~~kgIg~~lalfYe~~a~~lE~k~~~keA~~v~q~Giq~~aeP~ 148 (974)
T KOG1166|consen 94 LQDAEDFFSYLENKGIGTTLALFYEAYAKHLERKEYFKEAKEVFQLGIQNKAEPL 148 (974)
T ss_pred HhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCH
Confidence 356667776665543 45667778888889999999999999999988765554
No 466
>KOG1118 consensus Lysophosphatidic acid acyltransferase endophilin/SH3GL, involved in synaptic vesicle formation [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=34.72 E-value=1.2e+02 Score=19.31 Aligned_cols=47 Identities=11% Similarity=-0.027 Sum_probs=36.3
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 038754 5 AISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKP 51 (79)
Q Consensus 5 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 51 (79)
++--+-+.+--+.+...++...|..+.+.|+....+..+-+---++|
T Consensus 91 ~mik~gkeLg~dSs~g~tl~~~Gesm~~i~evk~sl~~~vkq~Fldp 137 (366)
T KOG1118|consen 91 VMIKHGKELGDDSSFGHTLIDAGESMREIGEVKDSLDDNVKQNFLDP 137 (366)
T ss_pred HHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 34445556666667788999999999999999998888777666666
No 467
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=34.54 E-value=1.2e+02 Score=24.83 Aligned_cols=54 Identities=15% Similarity=0.222 Sum_probs=40.7
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH
Q 038754 1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQ 54 (79)
Q Consensus 1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 54 (79)
++..|..+|++++..+|+....+...-......+.+...+-..+-.....+...
T Consensus 1464 ~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~ 1517 (2382)
T KOG0890|consen 1464 NWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEV 1517 (2382)
T ss_pred cHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHH
Confidence 467888899999999988877777777777888888888876665555555443
No 468
>TIGR01987 HI0074 nucleotidyltransferase substrate binding protein, HI0074 family. The member of this family from Haemophilus influenzae, HI0074, has been shown by crystal structure to resemble nucleotidyltransferase substrate binding proteins. It forms a complex with HI0073, encoded by the adjacent gene and containing a nucleotidyltransferase nucleotide binding domain (pfam01909).
Probab=34.48 E-value=78 Score=16.93 Aligned_cols=17 Identities=12% Similarity=-0.013 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHhhCCC
Q 038754 2 YHEAISCYERALTLLNR 18 (79)
Q Consensus 2 ~~~A~~~~~~~~~~~~~ 18 (79)
+.+|+..++++...++.
T Consensus 5 f~kAl~~L~~a~~~~~~ 21 (123)
T TIGR01987 5 FEQALMQLSDANWFDLT 21 (123)
T ss_pred HHHHHHHHHHHHhcCcc
Confidence 56677777777766443
No 469
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=34.44 E-value=30 Score=25.91 Aligned_cols=34 Identities=15% Similarity=-0.013 Sum_probs=29.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 038754 19 SLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPD 52 (79)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 52 (79)
.+...+.+|.+|...|+..+|+.+|.+|..--..
T Consensus 919 k~v~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge 952 (1480)
T KOG4521|consen 919 KPVIRFMLGIAYLGTGEPVKALNCFQSALSGFGE 952 (1480)
T ss_pred HHHHHHhhheeeecCCchHHHHHHHHHHhhcccc
Confidence 4567888999999999999999999999875443
No 470
>PRK10454 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIA; Provisional
Probab=34.21 E-value=78 Score=16.82 Aligned_cols=31 Identities=19% Similarity=0.112 Sum_probs=24.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 038754 18 RSLSTYAGLAYTYHLQDNFSAAITYYHKALW 48 (79)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 48 (79)
.++..++.-|.-..+.|++++|...++++-+
T Consensus 29 G~ArS~~~eAl~~Ak~gdfe~A~~~l~eA~e 59 (115)
T PRK10454 29 GQARSLAYAALKQAKQGDFAAAKAMMDQSRM 59 (115)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4556666677778899999999988887765
No 471
>PF06983 3-dmu-9_3-mt: 3-demethylubiquinone-9 3-methyltransferase; PDB: 1U7I_A 1TSJ_A 1U69_D 3L20_B 3OMS_A.
Probab=33.83 E-value=42 Score=17.51 Aligned_cols=16 Identities=19% Similarity=0.426 Sum_probs=13.0
Q ss_pred cCCHHHHHHHHHHHHc
Q 038754 33 QDNFSAAITYYHKALW 48 (79)
Q Consensus 33 ~~~~~~A~~~~~~al~ 48 (79)
.|+-++|+..|.+++.
T Consensus 10 ~g~a~eA~~fY~~vf~ 25 (116)
T PF06983_consen 10 NGNAEEALEFYKEVFG 25 (116)
T ss_dssp SS-HHHHHHHHHHHST
T ss_pred CCCHHHHHHHHHHHcC
Confidence 4788999999999985
No 472
>PRK15356 type III secretion system protein SsaH; Provisional
Probab=33.59 E-value=66 Score=15.79 Aligned_cols=42 Identities=7% Similarity=-0.082 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 038754 3 HEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYH 44 (79)
Q Consensus 3 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 44 (79)
.+|...+.-.-.+-|+.-.-....+.+++-+++..+|+..+.
T Consensus 11 ~qa~aiLnvlPqLIpD~~~r~vC~alllfGLne~~~A~~~La 52 (75)
T PRK15356 11 SQVHAMLPALTVIVPDKKLQLVCLALLLAGLNEPLKAAKILS 52 (75)
T ss_pred HHHHHHHHhhhhhcCCHHHHHHHHHHHHHhcCcHHHHHHHHh
Confidence 345555555556667777788889999999999999998763
No 473
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=33.25 E-value=1.5e+02 Score=19.67 Aligned_cols=29 Identities=21% Similarity=0.304 Sum_probs=22.9
Q ss_pred HHHHcCCHHHHHHHHHHHHccCCCCHHHH
Q 038754 29 TYHLQDNFSAAITYYHKALWLKPDDQFCT 57 (79)
Q Consensus 29 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 57 (79)
..++.++|..|..+.++.|+++|....+.
T Consensus 309 ~~~K~KNf~tAa~FArRLLel~p~~~~a~ 337 (422)
T PF06957_consen 309 QAFKLKNFITAASFARRLLELNPSPEVAE 337 (422)
T ss_dssp HCCCTTBHHHHHHHHHHHHCT--SCHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHcCCCHHHHH
Confidence 34689999999999999999999887543
No 474
>COG4016 Uncharacterized protein conserved in archaea [Function unknown]
Probab=32.97 E-value=80 Score=17.55 Aligned_cols=43 Identities=14% Similarity=-0.003 Sum_probs=32.7
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 038754 6 ISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALW 48 (79)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 48 (79)
+.=.+..+.++|..|+..++.+.+|..-.+-+=|.-+-+-+-+
T Consensus 54 isGvrslL~i~pPEPd~~~~~aKaY~EE~D~~VA~mMAr~vre 96 (165)
T COG4016 54 ISGVRSLLDIKPPEPDFNYKYAKAYSEEKDLEVAKMMARGVRE 96 (165)
T ss_pred hHhHHHHhCCCCCCCCcchhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 3446788999999999999999999888887777655544433
No 475
>TIGR02498 type_III_ssaH type III secretion system protein, SsaH family. This family describes a small protein, always smaller than 100 amino acids, encoded in pathogenicity islands for bacterial type III secretion systems in various strains of Yersinia, Salmonella, and enteropathogenic E. coli, as well as Chromobacterium violaceum and Citrobacter rodentium. Although strictly associated with type III secretion systems, this protein seems not yet to have been characterized as part of the apparatus or as an effector protein.
Probab=32.69 E-value=71 Score=15.87 Aligned_cols=41 Identities=12% Similarity=0.008 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 038754 4 EAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYH 44 (79)
Q Consensus 4 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 44 (79)
+|...+.-.-.+-|+.-.-...-+..++-+|+...|...+.
T Consensus 24 ea~ailnalP~li~D~~~r~vcea~llfGL~~~~~A~~~L~ 64 (79)
T TIGR02498 24 EAHSILNALPQIIPDKKDRLVCEAILLFGLNHKNDAVKLLE 64 (79)
T ss_pred HHHHHHHhcccccCCHhHHHHHHHHHHHhcCcHHHHHHHHh
Confidence 34444444444556666677778888999999999987764
No 476
>cd06455 M3A_TOP Peptidase M3 Thimet oligopeptidase (TOP; PZ-peptidase; endo-oligopeptidase A; endopeptidase 24.15; soluble metallo-endopeptidase; EC 3.4.24.15) family also includes neurolysin (endopeptidase 24.16, microsomal endopeptidase, mitochondrial oligopeptidase M, neurotensin endopeptidase, soluble angiotensin II-binding protein, thimet oligopeptidase II) which hydrolyzes oligopeptides such as neurotensin, bradykinin and dynorphin A. TOP and neurolysin are neuropeptidases expressed abundantly in the testis, but also found in the liver, lung and kidney. They are involved in the metabolism of neuropeptides under 20 amino acid residues long and cleave most bioactive peptides at the same sites, but recognize different positions on some naturally occurring and synthetic peptides; they cleave at distinct sites on the 13-residue bioactive peptide neurotensin, which modulates central dopaminergic and cholinergic circuits. TOP has been shown to degrade peptides released by the proteasom
Probab=32.00 E-value=1.5e+02 Score=19.52 Aligned_cols=25 Identities=12% Similarity=0.072 Sum_probs=13.8
Q ss_pred HHHcCCHHHHHHHHHHHHccCCCCH
Q 038754 30 YHLQDNFSAAITYYHKALWLKPDDQ 54 (79)
Q Consensus 30 ~~~~~~~~~A~~~~~~al~~~p~~~ 54 (79)
....|.-....+.+++.+-.+|+..
T Consensus 442 ~L~~Ggs~~p~ell~~flGr~~~~~ 466 (472)
T cd06455 442 VLAPGGSKDAADMLKDFLGREPNND 466 (472)
T ss_pred HhcCcCCcCHHHHHHHHhCCCCChh
Confidence 3344555555555666666666544
No 477
>PRK13807 maltose phosphorylase; Provisional
Probab=31.78 E-value=84 Score=22.31 Aligned_cols=29 Identities=14% Similarity=0.072 Sum_probs=24.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHccCCCCH
Q 038754 26 LAYTYHLQDNFSAAITYYHKALWLKPDDQ 54 (79)
Q Consensus 26 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 54 (79)
.+.+....|+.+.|...|.+++.+|-++.
T Consensus 632 ~ai~aa~~g~~~~A~~~f~~a~~~Dl~~~ 660 (756)
T PRK13807 632 HSILAAELGKEDKAVELYLRTARLDLDNY 660 (756)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhhhhhc
Confidence 45667899999999999999999876543
No 478
>PF11349 DUF3151: Protein of unknown function (DUF3151); InterPro: IPR014487 This group represents an uncharacterised conserved protein.
Probab=31.50 E-value=94 Score=16.92 Aligned_cols=34 Identities=15% Similarity=-0.052 Sum_probs=28.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 038754 19 SLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPD 52 (79)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 52 (79)
...++..++.+-...|+.+++..|.+-.-..+|.
T Consensus 91 fLRal~aLa~AA~~IGE~dE~~Rc~~~L~Dsdp~ 124 (129)
T PF11349_consen 91 FLRALAALARAAQAIGETDEYDRCRQFLRDSDPE 124 (129)
T ss_pred HHHHHHHHHHHHHHhCChhHHHHHHHHHHhCCHH
Confidence 3567888899999999999999988777777764
No 479
>PF06287 DUF1039: Protein of unknown function (DUF1039); InterPro: IPR010437 This family describes a small protein, always smaller than 100 amino acids, encoded in pathogenicity islands for bacterial type III secretion systems in various strains of Yersinia, Salmonella, and enteropathogenic Escherichia coli, as well as Chromobacterium violaceum and Citrobacter rodentium. Although strictly associated with type III secretion systems, this protein seems not yet to have been characterised as part of the apparatus or as an effector protein.
Probab=31.14 E-value=69 Score=15.31 Aligned_cols=41 Identities=15% Similarity=-0.013 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 038754 4 EAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYH 44 (79)
Q Consensus 4 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 44 (79)
+|.....-.-.+-|+.-.-...-+.+++-+|+...|...+.
T Consensus 11 ea~aIL~alP~Li~D~~~r~~c~alllfGL~~~~~Al~~L~ 51 (66)
T PF06287_consen 11 EARAILNALPQLIPDEEDRAVCEALLLFGLGEQAAALQLLA 51 (66)
T ss_pred HHHHHHHhchhhcCCHhHHHHHHHHHHHHcCChHHHHHHHh
Confidence 44444444445556666677778899999999999998764
No 480
>PF06855 DUF1250: Protein of unknown function (DUF1250); InterPro: IPR023089 This entry represents the YozE-like domain found in a group of proteins of unknown function.; PDB: 2KVS_A 2FJ6_A 2O6K_B.
Probab=30.41 E-value=25 Score=15.21 Aligned_cols=29 Identities=7% Similarity=0.236 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 038754 21 STYAGLAYTYHLQDNFSAAITYYHKALWL 49 (79)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 49 (79)
.-+..+..-+...+.+..++..+++++..
T Consensus 16 ~~~~eI~~Yle~~~~~~~~~~~fd~aw~~ 44 (46)
T PF06855_consen 16 TDFDEISSYLESNYDYLESMEIFDRAWSL 44 (46)
T ss_dssp SSHHHHHHHHHCHCCHHCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 33444444444567777777777777653
No 481
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=29.86 E-value=79 Score=15.53 Aligned_cols=24 Identities=13% Similarity=-0.022 Sum_probs=17.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHccC
Q 038754 27 AYTYHLQDNFSAAITYYHKALWLK 50 (79)
Q Consensus 27 ~~~~~~~~~~~~A~~~~~~al~~~ 50 (79)
..-.+..||++.|...-++|....
T Consensus 44 v~~~~~~Gd~~~A~~aS~~Ak~~~ 67 (82)
T PF04505_consen 44 VRSRYAAGDYEGARRASRKAKKWS 67 (82)
T ss_pred hHHHHHCCCHHHHHHHHHHhHHHH
Confidence 344567899999998888776543
No 482
>cd09240 BRO1_Alix Protein-interacting, N-terminal, Bro1-like domain of mammalian Alix and related domains. This family contains the N-terminal, Bro1-like domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), also called apoptosis-linked gene-2 interacting protein 1 (AIP1). It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also f
Probab=29.59 E-value=1.4e+02 Score=18.88 Aligned_cols=28 Identities=18% Similarity=0.086 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 038754 21 STYAGLAYTYHLQDNFSAAITYYHKALW 48 (79)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~A~~~~~~al~ 48 (79)
.+++..|......+++.+++..++.|..
T Consensus 256 ~A~y~~a~~~~e~~k~GeaIa~L~~A~~ 283 (346)
T cd09240 256 LAEYHQSLVAKAQKKFGEEIARLQHALE 283 (346)
T ss_pred HHHHHHHHHhhhhchHHHHHHHHHHHHH
Confidence 3556666677777888888888887765
No 483
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=29.54 E-value=1.9e+02 Score=19.84 Aligned_cols=47 Identities=11% Similarity=-0.026 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 038754 3 HEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWL 49 (79)
Q Consensus 3 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 49 (79)
..|-..|+--+...|+++..-+.+-..+...++-..|...|++++..
T Consensus 449 ~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r 495 (660)
T COG5107 449 ATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVER 495 (660)
T ss_pred chHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH
Confidence 34555666666666777666666666667777777777777766644
No 484
>cd09246 BRO1_Alix_like_1 Protein-interacting, N-terminal, Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro
Probab=28.75 E-value=1.6e+02 Score=18.74 Aligned_cols=28 Identities=14% Similarity=0.071 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 038754 21 STYAGLAYTYHLQDNFSAAITYYHKALW 48 (79)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~A~~~~~~al~ 48 (79)
.+++..|......+++.+++..++.|..
T Consensus 248 ~A~~~~a~~~~~~~k~GeaIa~L~~A~~ 275 (353)
T cd09246 248 EALYRAAKDLHEKEDIGEEIARLRAASD 275 (353)
T ss_pred HHHHHHHHHhHHhcchHHHHHHHHHHHH
Confidence 4566777777777888888888887755
No 485
>PF03097 BRO1: BRO1-like domain; InterPro: IPR004328 The BRO1 domain has about 390 residues and occurs in a number of eukaryotic proteins such as yeast BRO1 and human PDCD6IP/Alix that are involved in protein targeting to the vacuole or lysosome. The BRO1 domain of fungal and mammalian proteins binds with multivesicular body components (ESCRT-III proteins) such as yeast Snf7 and mammalian CHMP4b, and can function to target BRO1 domain-containing proteins to endosomes [, , ]. The BRO1 domain has a boomerang shape composed of 14 alpha-helices and 3 beta-sheets. It contains a TPR-like substructure in the central part []. The C terminus is less conserved. This domain is found in a number of signal transduction proteins. The Saccharomyces cerevisiae protein Bro1p is required for sorting endocytic cargo to the lumen of multivesicular bodies (MVBs). Alix appears to be the mammalian orthologue of Bro1p []. Alix is also involved in the ESCRT pathway, which facilitates membrane fission events during enveloped virus budding, multivesicular body formation, and cytokinesis. To promote HIV budding and cytokinesis, the ALIX protein must bind and recruit CHMP4 subunits of the ESCRT-III complex. The Bro1 domain of ALIX binds specifically to C-terminal residues of the human CHMP4 proteins [, ]. Likewise, the Homo sapiens Brox protein has a Bro1 domain. CHMP4 proteins are components of endosomal sorting complex required for transport III, via their Bro1 domains and to play roles in sorting of ubiquitinated cargoes []. Alix also binds to the nucleocapsid (NC) domain of HIV-1 Gag. Alix and the Bro1 domain can be specifically packaged into viral particles via the NC []. Myopic is the Drosophila homologue of the Bro1-domain tyrosine phosphatase HD-PTP, and it promotes the epidermal growth factor receptor (EGFR) signalling []. The Caenorhabditis elegans Bro1-domain protein, ALX-1, interacts with LIN-12/Notch. The EGO-2 protein also contains a Bro1 domain. Notch-type signalling mediates numerous inductive events during development [].; PDB: 2VSV_A 1ZB1_A 3UM3_A 3ULY_A 3R9M_A 3ZXP_A 3UM2_A 3UM0_A 3UM1_D 3RAU_B ....
Probab=28.63 E-value=1.6e+02 Score=18.58 Aligned_cols=28 Identities=14% Similarity=0.001 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 038754 21 STYAGLAYTYHLQDNFSAAITYYHKALW 48 (79)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~A~~~~~~al~ 48 (79)
.+++..|......+++.+|+..++.|..
T Consensus 240 ~A~y~~A~~~~~~~~~G~aia~L~~A~~ 267 (377)
T PF03097_consen 240 LAHYHQALAAEEAKKYGEAIARLRRAEE 267 (377)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHH
Confidence 4666777777788888888777776654
No 486
>PF10078 DUF2316: Uncharacterized protein conserved in bacteria (DUF2316); InterPro: IPR018757 Members of this family of hypothetical bacterial proteins have no known function.
Probab=28.10 E-value=93 Score=15.80 Aligned_cols=34 Identities=15% Similarity=0.173 Sum_probs=23.9
Q ss_pred HHHHHHHHccCCCCH----HHHHHHHHHHHHhhhcCCC
Q 038754 40 ITYYHKALWLKPDDQ----FCTEMLSLALVDEGRHGID 73 (79)
Q Consensus 40 ~~~~~~al~~~p~~~----~~~~~l~~~~~~~~~~~~~ 73 (79)
....+++|.+++.++ ..+..+.+.+...|.....
T Consensus 37 ~~~le~vL~l~~~~~~~vW~lRdyL~~~i~~~G~eP~P 74 (89)
T PF10078_consen 37 PEHLEQVLNLKQPFPEDVWILRDYLNDKIKEQGKEPVP 74 (89)
T ss_pred HHHHHHHHcCCCCCcccchHHHHHHHHHHHHcCCCCCC
Confidence 456788888875554 5566788888887776653
No 487
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=28.02 E-value=2.4e+02 Score=20.57 Aligned_cols=34 Identities=12% Similarity=0.145 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH---HccCCCCH
Q 038754 21 STYAGLAYTYHLQDNFSAAITYYHKA---LWLKPDDQ 54 (79)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~A~~~~~~a---l~~~p~~~ 54 (79)
.+-.....+|+.+|+|++|+.+--.+ +..++++.
T Consensus 60 ~AaL~~SKVyy~Lgeye~Al~yAL~ag~~F~Vd~~S~ 96 (929)
T KOG2062|consen 60 LAALLASKVYYYLGEYEDALEYALRAGDDFDVDENSD 96 (929)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCccc
Confidence 44456788999999999999987555 34455444
No 488
>COG5499 Predicted transcription regulator containing HTH domain [Transcription]
Probab=26.69 E-value=1.1e+02 Score=16.29 Aligned_cols=17 Identities=6% Similarity=-0.034 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHhhCCCC
Q 038754 3 HEAISCYERALTLLNRS 19 (79)
Q Consensus 3 ~~A~~~~~~~~~~~~~~ 19 (79)
..|+....+.+..+|.+
T Consensus 15 ~~Al~eV~~lfd~dpE~ 31 (120)
T COG5499 15 RWALAEVDKLFDNDPEN 31 (120)
T ss_pred HHHHHHHHHHhcCCccc
Confidence 34444444444444443
No 489
>cd09241 BRO1_ScRim20-like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 (also known as PalA) and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Bro1, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind comp
Probab=26.67 E-value=1.6e+02 Score=18.62 Aligned_cols=29 Identities=10% Similarity=0.063 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 038754 20 LSTYAGLAYTYHLQDNFSAAITYYHKALW 48 (79)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 48 (79)
..+++..|......+++.+++..++.++.
T Consensus 237 A~A~y~~a~~~~e~~k~Ge~Ia~L~~A~~ 265 (355)
T cd09241 237 AAAHYRMALVALEKSKYGEEVARLRVALA 265 (355)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 34556666666666777788877777765
No 490
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=26.23 E-value=1.1e+02 Score=22.37 Aligned_cols=38 Identities=18% Similarity=0.128 Sum_probs=32.9
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH
Q 038754 17 NRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQ 54 (79)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 54 (79)
..-+.++..++..+-.-|++++|-..|-.+++++.-+.
T Consensus 992 ~k~~~vhlk~a~~ledegk~edaskhyveaiklntyni 1029 (1636)
T KOG3616|consen 992 DKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYNI 1029 (1636)
T ss_pred ccCccchhHHhhhhhhccchhhhhHhhHHHhhcccccc
Confidence 34577888899999999999999999999999987665
No 491
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=25.95 E-value=2.7e+02 Score=20.43 Aligned_cols=61 Identities=7% Similarity=-0.123 Sum_probs=41.3
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhh
Q 038754 8 CYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEG 68 (79)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 68 (79)
-+..-+.+++.+..++..|-.++.+.|+..+-...-.+.-.+-|-++..|..+......+.
T Consensus 101 t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt 161 (881)
T KOG0128|consen 101 TLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMT 161 (881)
T ss_pred HHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhc
Confidence 3455556667777777777777888888888777777777777877766655544444333
No 492
>PF09674 DUF2400: Protein of unknown function (DUF2400); InterPro: IPR014127 Members of this uncharacterised protein family are found sporadically, so far only among spirochetes, epsilon and delta proteobacteria, and Bacteroides. The function is unknown and its gene neighbourhoods show little conservation.
Probab=25.56 E-value=38 Score=20.28 Aligned_cols=35 Identities=17% Similarity=0.130 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHH
Q 038754 21 STYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQF 55 (79)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 55 (79)
..-..+|.+-.++.+...|++.=+..-+++|+||.
T Consensus 185 ~var~LGL~~rk~~d~k~A~elT~~lr~~~p~DPv 219 (232)
T PF09674_consen 185 RVARKLGLLKRKSADWKAARELTEALREFDPDDPV 219 (232)
T ss_pred HHHHHcCCccCCCccHHHHHHHHHHHHhcCCCCCc
Confidence 34456777778889999999988888899999983
No 493
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=25.45 E-value=1.6e+02 Score=18.22 Aligned_cols=40 Identities=13% Similarity=0.140 Sum_probs=27.0
Q ss_pred HHcCCHHHHHHHHHHHHccCCCCH-----------HHHHHHHHHHHHhhhc
Q 038754 31 HLQDNFSAAITYYHKALWLKPDDQ-----------FCTEMLSLALVDEGRH 70 (79)
Q Consensus 31 ~~~~~~~~A~~~~~~al~~~p~~~-----------~~~~~l~~~~~~~~~~ 70 (79)
.++.++.+|++.+++....+|+.- .....|+.++...++.
T Consensus 128 RRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~~~ 178 (284)
T KOG3960|consen 128 RRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQEQDQA 178 (284)
T ss_pred HHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 356678889999998888888763 2334455666555444
No 494
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=25.10 E-value=2.5e+02 Score=20.02 Aligned_cols=25 Identities=24% Similarity=0.337 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Q 038754 22 TYAGLAYTYHLQDNFSAAITYYHKA 46 (79)
Q Consensus 22 ~~~~~~~~~~~~~~~~~A~~~~~~a 46 (79)
+-..+..+|+-+|+|++|+.+--.+
T Consensus 61 aaL~~SKvYy~LgeY~~Ai~yAL~a 85 (926)
T COG5116 61 AALCLSKVYYVLGEYQQAIEYALRA 85 (926)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHhc
Confidence 5566888999999999999876433
No 495
>PF14858 DUF4486: Domain of unknown function (DUF4486)
Probab=24.94 E-value=2e+02 Score=19.81 Aligned_cols=29 Identities=17% Similarity=0.196 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 038754 20 LSTYAGLAYTYHLQDNFSAAITYYHKALW 48 (79)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 48 (79)
...+.....||...+.+.+|....++++.
T Consensus 197 ~~Ly~avc~cY~d~~~~~~A~~farraL~ 225 (542)
T PF14858_consen 197 VTLYTAVCQCYEDCQAGEHAEAFARRALA 225 (542)
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 46788889999999999999999888875
No 496
>cd09239 BRO1_HD-PTP_like Protein-interacting, N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP) and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. HD-PTP participates in cell migration and endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-l
Probab=24.83 E-value=1.5e+02 Score=18.94 Aligned_cols=27 Identities=15% Similarity=0.139 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 038754 22 TYAGLAYTYHLQDNFSAAITYYHKALW 48 (79)
Q Consensus 22 ~~~~~~~~~~~~~~~~~A~~~~~~al~ 48 (79)
+++..|......+++.+++..++.|..
T Consensus 254 A~y~~a~~~~~~~k~Ge~Ia~L~~A~~ 280 (361)
T cd09239 254 AHLHMGKQSEEQQKMGERVAYYQLAND 280 (361)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 445566666666777778777777665
No 497
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=24.02 E-value=1.2e+02 Score=22.24 Aligned_cols=25 Identities=16% Similarity=0.337 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH
Q 038754 21 STYAGLAYTYHLQDNFSAAITYYHK 45 (79)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~A~~~~~~ 45 (79)
..|-..|.+|-+..+++.|+++|++
T Consensus 662 elydkagdlfeki~d~dkale~fkk 686 (1636)
T KOG3616|consen 662 ELYDKAGDLFEKIHDFDKALECFKK 686 (1636)
T ss_pred HHHHhhhhHHHHhhCHHHHHHHHHc
Confidence 4566677888888888888888865
No 498
>PF05470 eIF-3c_N: Eukaryotic translation initiation factor 3 subunit 8 N-terminus; InterPro: IPR008905 The largest of the mammalian translation initiation factors, eIF3, consists of at least eight subunits ranging in mass from 35 to 170 kDa. eIF3 binds to the 40 S ribosome in an early step of translation initiation and promotes the binding of methionyl-tRNAi and mRNA [].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation, 0005852 eukaryotic translation initiation factor 3 complex
Probab=23.72 E-value=2.2e+02 Score=19.77 Aligned_cols=29 Identities=7% Similarity=-0.119 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 038754 21 STYAGLAYTYHLQDNFSAAITYYHKALWL 49 (79)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 49 (79)
.+.-.+|.|.++.|...+|-.++...+..
T Consensus 501 R~~vQLGLcAFR~G~I~eah~~L~el~~s 529 (595)
T PF05470_consen 501 RAMVQLGLCAFRAGLIKEAHQCLSELCSS 529 (595)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Confidence 35556889999999999999999887763
No 499
>PRK09635 sigI RNA polymerase sigma factor SigI; Provisional
Probab=22.92 E-value=1.9e+02 Score=17.71 Aligned_cols=24 Identities=8% Similarity=0.162 Sum_probs=18.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 038754 24 AGLAYTYHLQDNFSAAITYYHKAL 47 (79)
Q Consensus 24 ~~~~~~~~~~~~~~~A~~~~~~al 47 (79)
..++.+|...|+..+|....+.++
T Consensus 17 ~L~~~a~r~lgs~~dAEDvvQE~f 40 (290)
T PRK09635 17 YLVDLAFRMVGDIGVAEDMVQEAF 40 (290)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHH
Confidence 346678889999999888777654
No 500
>PF03632 Glyco_hydro_65m: Glycosyl hydrolase family 65 central catalytic domain; InterPro: IPR005195 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The family of glycosyl hydrolases (GH65 from CAZY) which contains this domain includes vacuolar acid trehalase and maltose phosphorylase. Maltose phosphorylase (MP) is a dimeric enzyme that catalyzes the conversion of maltose and inorganic phosphate into beta-D-glucose-1-phosphate and glucose. The central domain is the catalytic domain, which binds a phosphate ion that is proximal the the highly conserved Glu. The arrangement of the phosphate and the glutamate is thought to cause nucelophilic attack on the anomeric carbon atom []. The catalytic domain also forms the majority of the dimerisation interface.; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1H54_A.
Probab=22.72 E-value=39 Score=21.65 Aligned_cols=37 Identities=16% Similarity=0.164 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q 038754 17 NRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD 53 (79)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 53 (79)
+++...+...+.+....|+.+.|...|.+++.+|-++
T Consensus 299 hdssLS~~i~ai~aa~lg~~~~A~~~f~~s~~~Dl~~ 335 (370)
T PF03632_consen 299 HDSSLSWSIHAIVAARLGDSEKAYDYFRKSARIDLDN 335 (370)
T ss_dssp --STTCHHHHHHHHHHTT-HHHHHHHHCCCCTTTTTT
T ss_pred CCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcc
Done!