BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038755
(321 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MTC|A Chain A, Crystal Structure Of Inpp5b In Complex With
Phosphatidylinositol 4- Phosphate
Length = 313
Score = 120 bits (300), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 85/294 (28%), Positives = 138/294 (46%), Gaps = 34/294 (11%)
Query: 37 TWNMNGQVSYEDLVELIGSN--RKFDLLIVGLQEVPRNNIARLLKRAVAETHDLFAKAIM 94
T+N+NGQ S ++ + L SN + D+ VG QE+ + A E + KA+
Sbjct: 14 TYNVNGQ-SPKECLRLWLSNGIQAPDVYCVGFQELDLSKEAFFFHDTPKEEE--WFKAVS 70
Query: 95 QSLQ-----------------LFVFGPRNSEPLVKELKLDKYSVXXXXXXXXXXXXAVAI 137
+ L L ++ + + E++ + +V VAI
Sbjct: 71 EGLHPDAKYAKVKLIRLVGIMLLLYVKQEHAAYISEVEAE--TVGTGIMGRMGNKGGVAI 128
Query: 138 RINYKGITMVFISCHLSAHARNVEERNSECRHILHSLFSKNQNPYAEPAQIT-----VWL 192
R + ++ ++ HL+AH E RN + + I + +P P I+ +WL
Sbjct: 129 RFQFHNTSICVVNSHLAAHIEEYERRNQDYKDICSRMQFCQPDPSLPPLTISNHDVILWL 188
Query: 193 GDLNYRIQGLNTHPVRNIIHKDLQKLLTSKDQLLQEAERGQIFNGYCEGSLTFKPTYKYN 252
GDLNYRI+ L+ V+ +I + ++L + DQL + +F G+ EG LTF+PTYKY+
Sbjct: 189 GDLNYRIEELDVEKVKKLIEEKDFQMLYAYDQLKIQVAAKTVFEGFTEGELTFQPTYKYD 248
Query: 253 IGSSDYDTSYKVRVPSWTDRILFKIDDPDKINAALHXXXXXXXXXXXXHKPVKA 306
GS D+DTS K R P+W DRIL+K + +++ H HKPV +
Sbjct: 249 TGSDDWDTSEKCRAPAWCDRILWKGKNITQLSYQSH-----MALKTSDHKPVSS 297
>pdb|3N9V|A Chain A, Crystal Structure Of Inpp5b
pdb|3N9V|B Chain B, Crystal Structure Of Inpp5b
Length = 313
Score = 120 bits (300), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 85/294 (28%), Positives = 138/294 (46%), Gaps = 34/294 (11%)
Query: 37 TWNMNGQVSYEDLVELIGSN--RKFDLLIVGLQEVPRNNIARLLKRAVAETHDLFAKAIM 94
T+N+NGQ S ++ + L SN + D+ VG QE+ + A E + KA+
Sbjct: 11 TYNVNGQ-SPKECLRLWLSNGIQAPDVYCVGFQELDLSKEAFFFHDTPKEEE--WFKAVS 67
Query: 95 QSLQ-----------------LFVFGPRNSEPLVKELKLDKYSVXXXXXXXXXXXXAVAI 137
+ L L ++ + + E++ + +V VAI
Sbjct: 68 EGLHPDAKYAKVKLIRLVGIMLLLYVKQEHAAYISEVEAE--TVGTGIMGRMGNKGGVAI 125
Query: 138 RINYKGITMVFISCHLSAHARNVEERNSECRHILHSLFSKNQNPYAEPAQIT-----VWL 192
R + ++ ++ HL+AH E RN + + I + +P P I+ +WL
Sbjct: 126 RFQFHNTSICVVNSHLAAHIEEYERRNQDYKDICSRMQFCQPDPSLPPLTISNHDVILWL 185
Query: 193 GDLNYRIQGLNTHPVRNIIHKDLQKLLTSKDQLLQEAERGQIFNGYCEGSLTFKPTYKYN 252
GDLNYRI+ L+ V+ +I + ++L + DQL + +F G+ EG LTF+PTYKY+
Sbjct: 186 GDLNYRIEELDVEKVKKLIEEKDFQMLYAYDQLKIQVAAKTVFEGFTEGELTFQPTYKYD 245
Query: 253 IGSSDYDTSYKVRVPSWTDRILFKIDDPDKINAALHXXXXXXXXXXXXHKPVKA 306
GS D+DTS K R P+W DRIL+K + +++ H HKPV +
Sbjct: 246 TGSDDWDTSEKCRAPAWCDRILWKGKNITQLSYQSH-----MALKTSDHKPVSS 294
>pdb|1I9Y|A Chain A, Crystal Structure Of Inositol Polyphosphate 5-Phosphatase
Domain (Ipp5c) Of Spsynaptojanin
pdb|1I9Z|A Chain A, Crystal Structure Of Inositol Polyphosphate 5-Phosphatase
Domain (Ipp5c) Of Spsynaptojanin In Complex With
Inositol (1,4)-Bisphosphate And Calcium Ion
Length = 347
Score = 101 bits (252), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 58/144 (40%), Positives = 83/144 (57%), Gaps = 4/144 (2%)
Query: 134 AVAIRINYKGITMVFISCHLSAHARNVEERNSECRHILHSL-FSKNQNPYAEPAQITVWL 192
AVAIR +Y+ + FI+ HL+A N +ER+ + R I L F + ++ + VW
Sbjct: 148 AVAIRFDYEDTGLCFITSHLAAGYTNYDERDHDYRTIASGLRFRRGRSIFNH--DYVVWF 205
Query: 193 GDLNYRIQGLNTHPVRNIIHKDLQKLLTSKDQLLQEAERGQIFNGYCEGSLTFKPTYKYN 252
GD NYRI L V I + L DQL ++ G++F + E +TF PTYK++
Sbjct: 206 GDFNYRIS-LTYEEVVPCIAQGKLSYLFEYDQLNKQMLTGKVFPFFSELPITFPPTYKFD 264
Query: 253 IGSSDYDTSYKVRVPSWTDRILFK 276
IG+ YDTS K RVP+WTDRIL++
Sbjct: 265 IGTDIYDTSDKHRVPAWTDRILYR 288
>pdb|2XSW|A Chain A, Crystal Structure Of Human Inpp5e
pdb|2XSW|B Chain B, Crystal Structure Of Human Inpp5e
Length = 357
Score = 98.2 bits (243), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 72/280 (25%), Positives = 129/280 (46%), Gaps = 23/280 (8%)
Query: 17 VAVENHCNFSRNSDLCICVVTWNMNGQ----VSYEDLVELIGSNRKFDLLIVGLQE--VP 70
+ + + + ++ + V TWNM GQ S ++ + ++ DL ++G+QE
Sbjct: 12 LGADELARYFPDRNVALFVATWNMQGQKELPPSLDEFLLPAEADYAQDLYVIGVQEGCSD 71
Query: 71 RNNIARLLKRAVAETHDLFAKAIMQSLQLFVFGPRNSEPLVKELKLDKYSVXXXXXXXXX 130
R L+ + + L + A L + +F R+ E++ +V
Sbjct: 72 RREWETRLQETLGPHYVLLSSAAHGVLYMSLFIRRDLIWFCSEVECS--TVTTRIVSQIK 129
Query: 131 XXXAVAIRINYKGITMVFISCHLSAHARNVEERNSECRHILHSLF----SKNQNPY-AEP 185
A+ I + G + +FI+ H ++ V ER + + +L + NPY +
Sbjct: 130 TKGALGISFTFFGTSFLFITSHFTSGDGKVAERLLDYTRTVQALVLPRNVPDTNPYRSSA 189
Query: 186 AQITV------WLGDLNYRIQGLNTHPVRNIIHKDLQ---KLLTSKDQLLQEAERGQIFN 236
A +T W GD N+R+ G T V ++ + L L DQL++E +G IF
Sbjct: 190 ADVTTRFDEVFWFGDFNFRLSGGRTV-VDALLCQGLVVDVPALLQHDQLIREMRKGSIFK 248
Query: 237 GYCEGSLTFKPTYKYNIGSSDYDTSYKVRVPSWTDRILFK 276
G+ E + F P+YK++IG YD++ K R PS+TDR+L++
Sbjct: 249 GFQEPDIHFLPSYKFDIGKDTYDSTSKQRTPSYTDRVLYR 288
>pdb|3NR8|B Chain B, Crystal Structure Of Human Ship2
pdb|3NR8|A Chain A, Crystal Structure Of Human Ship2
pdb|4A9C|A Chain A, Crystal Structure Of Human Ship2 In Complex With Biphenyl
2,3',4,5',6-Pentakisphosphate
pdb|4A9C|B Chain B, Crystal Structure Of Human Ship2 In Complex With Biphenyl
2,3',4,5',6-Pentakisphosphate
Length = 316
Score = 81.6 bits (200), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 103/234 (44%), Gaps = 20/234 (8%)
Query: 60 DLLIVGLQE--VPRNNIARLLKRAVAETHDLFAKAI-MQSL---QLFVFGPRNSEPLVKE 113
D+ + G QE V LL+ + E DL + I MQSL ++ V E +
Sbjct: 49 DIYVFGTQENSVGDREWLDLLRGGLKELTDLDYRPIAMQSLWNIKVAVLVKPEHENRISH 108
Query: 114 LKLDKYSVXXXXXXXXXXXXAVAIRINYKGITMVFISCHLSAHARNVEERNSECRHILH- 172
+ SV AV + + G + F++CHL++ RN IL
Sbjct: 109 VSTS--SVKTGIANTLGNKGAVGVSFMFNGTSFGFVNCHLTSGNEKTARRNQNYLDILRL 166
Query: 173 -SLFSKNQNPYAEPAQIT--VWLGDLNYRIQGLNTHPVRNIIHKDLQKLLTSKDQLLQEA 229
SL + N + + T W GDLNYR+ ++ + N I + + L DQL E
Sbjct: 167 LSLGDRQLNAFDISLRFTHLFWFGDLNYRLD-MDIQEILNYISRKEFEPLLRVDQLNLER 225
Query: 230 ERGQIFNGYCEGSLTFKPTYKYNIGSSDY-------DTSYKVRVPSWTDRILFK 276
E+ ++F + E ++F PTY+Y GS D T + VPSW DRIL+K
Sbjct: 226 EKHKVFLRFSEEEISFPPTYRYERGSRDTYAWHKQKPTGVRTNVPSWCDRILWK 279
>pdb|1NTF|A Chain A, Crystal Structure Of Cimex Nitrophorin
pdb|1Y21|A Chain A, Crystal Structure Of Cimex Nitrophorin No Complex
pdb|1SI6|X Chain X, Crystal Structure Of Cimex Nitrophorin Complex With Co
pdb|1YJH|A Chain A, Crystal Structure Of Cimex Nitrophorin Ferrous No Complex
pdb|2IMQ|X Chain X, Crystal Structure Of Ferrous Cimex Nitrophorin
Length = 282
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 59/93 (63%), Gaps = 5/93 (5%)
Query: 184 EPAQITVWLGDLNYRIQGLNTHPVRNIIHKDLQKLLTSKDQLLQEAERGQIFNGYCEGSL 243
+P+ W+GDLN R++ TH ++++ ++ L + DQL ++A+ ++F+G+ E +
Sbjct: 161 DPSDFLFWIGDLNVRVETNATH-AKSLVDQNNIDGLMAFDQL-KKAKEQKLFDGWTEPQV 218
Query: 244 TFKPTYKYNIGSSDYDTSYKVRVPSWTDRILFK 276
TFKPTYK+ + +YD S PSWTDR L+K
Sbjct: 219 TFKPTYKFKPNTDEYDLS---ATPSWTDRALYK 248
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,558,752
Number of Sequences: 62578
Number of extensions: 320951
Number of successful extensions: 631
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 611
Number of HSP's gapped (non-prelim): 9
length of query: 321
length of database: 14,973,337
effective HSP length: 99
effective length of query: 222
effective length of database: 8,778,115
effective search space: 1948741530
effective search space used: 1948741530
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)