Query 038755
Match_columns 321
No_of_seqs 148 out of 1287
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 02:59:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038755.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038755hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0566 Inositol-1,4,5-triphos 100.0 1E-81 2.2E-86 631.9 24.7 293 10-313 516-834 (1080)
2 smart00128 IPPc Inositol polyp 100.0 6E-77 1.3E-81 560.9 27.7 281 30-315 2-309 (310)
3 PLN03191 Type I inositol-1,4,5 100.0 2.3E-75 5E-80 573.4 27.3 223 85-316 363-597 (621)
4 COG5411 Phosphatidylinositol 5 100.0 1.7E-64 3.7E-69 476.8 18.3 303 8-319 7-335 (460)
5 PTZ00312 inositol-1,4,5-tripho 100.0 3.2E-30 7E-35 233.2 10.9 174 128-308 65-356 (356)
6 KOG0565 Inositol polyphosphate 99.9 4.9E-21 1.1E-25 161.7 12.2 137 85-223 2-145 (145)
7 KOG1976 Inositol polyphosphate 99.8 1.2E-20 2.6E-25 171.3 8.7 173 128-312 154-390 (391)
8 TIGR03395 sphingomy sphingomye 99.7 1.3E-14 2.7E-19 135.6 21.0 214 56-307 34-282 (283)
9 PRK11756 exonuclease III; Prov 99.6 6.4E-15 1.4E-19 136.2 12.8 148 33-200 1-157 (268)
10 PRK05421 hypothetical protein; 99.6 4.4E-13 9.6E-18 123.9 19.5 145 32-197 43-193 (263)
11 PF03372 Exo_endo_phos: Endonu 99.4 4.1E-12 8.9E-17 112.4 13.2 154 36-201 1-171 (249)
12 TIGR00633 xth exodeoxyribonucl 99.3 3E-11 6.6E-16 110.1 15.3 146 33-200 1-155 (255)
13 COG3568 ElsH Metal-dependent h 99.3 2.1E-10 4.6E-15 104.6 17.5 149 29-199 6-177 (259)
14 PTZ00297 pantothenate kinase; 99.3 5.8E-10 1.3E-14 123.2 23.5 159 31-197 9-206 (1452)
15 KOG2756 Predicted Mg2+-depende 99.3 9.4E-11 2E-15 105.9 14.1 154 31-201 98-258 (349)
16 TIGR00195 exoDNase_III exodeox 99.3 1.4E-10 3E-15 106.3 15.3 145 33-201 1-153 (254)
17 PRK13911 exodeoxyribonuclease 99.2 1E-09 2.3E-14 100.8 16.8 141 33-201 1-151 (250)
18 PLN03144 Carbon catabolite rep 99.1 2.9E-09 6.3E-14 108.1 17.0 172 30-213 252-478 (606)
19 KOG3873 Sphingomyelinase famil 99.1 2.5E-09 5.5E-14 100.3 13.3 257 30-312 6-294 (422)
20 smart00476 DNaseIc deoxyribonu 99.0 1.9E-08 4.2E-13 93.5 17.0 152 32-199 17-189 (276)
21 PRK15251 cytolethal distending 99.0 6.9E-09 1.5E-13 95.5 13.6 143 33-200 25-198 (271)
22 COG0708 XthA Exonuclease III [ 98.9 2.8E-09 6.1E-14 97.5 6.0 142 34-201 2-155 (261)
23 KOG2338 Transcriptional effect 98.2 4.1E-06 8.8E-11 82.1 9.1 163 31-201 115-307 (495)
24 COG3021 Uncharacterized protei 97.5 0.00077 1.7E-08 63.2 10.8 143 29-196 85-232 (309)
25 PF14529 Exo_endo_phos_2: Endo 96.3 0.016 3.4E-07 46.0 7.1 34 267-305 86-119 (119)
26 COG5239 CCR4 mRNA deadenylase, 92.9 0.29 6.4E-06 46.9 6.6 134 32-197 30-186 (378)
27 PF03494 Beta-APP: Beta-amyloi 44.4 33 0.00072 21.7 2.9 17 128-145 21-37 (39)
28 KOG3870 Uncharacterized conser 41.4 12 0.00026 36.7 0.9 18 184-201 350-367 (434)
29 PF15130 DUF4566: Domain of un 41.3 14 0.0003 32.6 1.2 42 270-313 120-161 (241)
30 KOG0620 Glucose-repressible al 39.5 65 0.0014 31.3 5.6 18 295-312 336-353 (361)
31 PRK10947 global DNA-binding tr 30.0 36 0.00078 28.3 1.9 27 245-271 93-120 (135)
32 cd00248 Mth938-like Mth938-lik 29.6 41 0.00088 26.7 2.1 33 35-68 28-62 (109)
33 PF10515 APP_amyloid: beta-amy 26.4 21 0.00045 24.6 -0.1 7 246-252 45-51 (52)
34 PF04430 DUF498: Protein of un 25.2 86 0.0019 24.7 3.2 34 36-69 29-64 (110)
35 KOG3363 Uncharacterized conser 24.5 68 0.0015 27.6 2.6 36 34-69 85-122 (196)
36 cd05125 Mth938_2P1-like Mth938 24.3 53 0.0011 26.4 1.9 34 35-68 29-64 (114)
37 PF07829 Toxin_14: Alpha-A con 24.0 25 0.00055 20.1 -0.0 11 262-272 16-26 (26)
38 PRK10328 DNA binding protein, 20.5 67 0.0014 26.7 1.8 28 245-274 93-123 (134)
No 1
>KOG0566 consensus Inositol-1,4,5-triphosphate 5-phosphatase (synaptojanin), INP51/INP52/INP53 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1e-81 Score=631.85 Aligned_cols=293 Identities=34% Similarity=0.584 Sum_probs=266.2
Q ss_pred CccchhhHhhhhhcCCcccCceeEEEEEEecCCC--CCcccHHHHhc------cCCCCceEEEeecCccchh--------
Q 038755 10 TREGIQTVAVENHCNFSRNSDLCICVVTWNMNGQ--VSYEDLVELIG------SNRKFDLLIVGLQEVPRNN-------- 73 (321)
Q Consensus 10 ~~~~i~~~~~~~~~~~~~~~~l~v~v~TwNv~~~--~~~~~l~~~l~------~~~~~Di~viglQE~~~~~-------- 73 (321)
.++.|.+.+.+++.+|+.+++++|+|+||||||. .+..+|.+||- ...++|||||||||++.++
T Consensus 516 v~~yv~~~L~er~~eyt~~k~i~IfvgTfNvNG~s~~~k~~L~~WLfp~s~~~~~~~aDIyviG~eEvVeLnag~iv~As 595 (1080)
T KOG0566|consen 516 VHEYVLKELRERRSEYTEPKDISIFVGTFNVNGRSAAFKDDLSDWLFPISRGKEFSPADIYVIGFEEVVELNAGNIVSAS 595 (1080)
T ss_pred hhHHHHHHHHHhhhhhccccceEEEEEeeeccCccccchhhHHhhccccccCCcCCcCcEEEEeehhhhhcCccceeccC
Confidence 5778999999999999999999999999999994 44568999974 1236999999999998754
Q ss_pred ------HHHHHHHHcC---CCcEEEEEeeeeeEEEEEEecCCCcccccceeeeeEeecCccccccccCceEEEEEEEcCe
Q 038755 74 ------IARLLKRAVA---ETHDLFAKAIMQSLQLFVFGPRNSEPLVKELKLDKYSVGGFGGFIGRKKGAVAIRINYKGI 144 (321)
Q Consensus 74 ------~~~~l~~~l~---~~y~~v~~~~l~gi~l~vf~~~~~~~~i~~~~~~~~~~gg~gg~~g~nKGaV~v~~~i~~~ 144 (321)
|+..+++.++ ..|+++.+.+|+|++|++|+|.+.+++|++|..++++| ||||..| |||||+|||.+++|
T Consensus 596 ~tk~~~Wee~i~~~Ln~~~~kYvlL~s~QlvGv~L~iF~r~~~~p~Ik~V~~~tkKT-GfGG~tg-NKGAVAIrf~~~~T 673 (1080)
T KOG0566|consen 596 TTKRRFWEEKILKTLNRYKNKYVLLRSEQLVGVCLLLFIRPDHAPYIKDVAGDTKKT-GFGGATG-NKGAVAIRFVYHAT 673 (1080)
T ss_pred hHHHHHHHHHHHHHhcCCCCceEEEehhhhheeeEEEEEcccccchhhhcccceeec-ccccccC-CCceEEEEEEeccc
Confidence 4555666664 47999999999999999999999999999999998876 8999988 79999999999999
Q ss_pred EEEEEeecCCCCCccHHHHHHHHHHHHHhc-cCCCCCCCCCCcceEEEeccccccccCCCchhhHHHHhhhhHHHhhhhh
Q 038755 145 TMVFISCHLSAHARNVEERNSECRHILHSL-FSKNQNPYAEPAQITVWLGDLNYRIQGLNTHPVRNIIHKDLQKLLTSKD 223 (321)
Q Consensus 145 ~i~fin~HL~a~~~~~~~R~~~~~~I~~~l-f~~~~~~~~~~~d~vf~~GDlNyRi~~~~~~~~~~~i~~~~~~~l~~~D 223 (321)
+|||||+|||||+.++++||.||.+|.+++ |... .-+.+||+|||||||||||++ ++++|++.+.++.++.|+++|
T Consensus 674 sfCFv~SHlAAG~snv~ERn~DY~tI~r~l~Fp~G--r~I~~HD~ifW~GDFNYRI~l-~nEEVr~~v~~~d~~kL~e~D 750 (1080)
T KOG0566|consen 674 SFCFVCSHLAAGQSNVEERNEDYKTIARKLRFPRG--RMIFSHDYIFWLGDFNYRIDL-SNEEVRRLVRNQDLDKLLEYD 750 (1080)
T ss_pred cEEEEecccccccchHhhhhhhHHHHHHhccccCC--ccccCCceEEEecccceeecC-CHHHHHHHHHhccHHHHhhHH
Confidence 999999999999999999999999999997 6542 235789999999999999999 899999999999999999999
Q ss_pred HHHHHhhhcccCCccccCCccCCCCccccCCCCCCCCCCCCCCcccccceeeecCCCccccceeeeeeeccCCCccCCcc
Q 038755 224 QLLQEAERGQIFNGYCEGSLTFKPTYKYNIGSSDYDTSYKVRVPSWTDRILFKIDDPDKINAALHSYESIDDIYSSDHKP 303 (321)
Q Consensus 224 QL~~~~~~~~~f~~f~E~~I~F~PTYK~~~~s~~ydts~k~R~PsWcDRIL~~~~~~~~~~~~~~~Y~s~~~~~~SDHkP 303 (321)
||++||.+|.+|.||.|++|+|+||||||.||++||||.|+|+|||||||||+... + .++.|.+.+ +.+|||||
T Consensus 751 QL~~q~~~G~vF~gF~E~~ltF~PTYKyD~gTd~YDTSeK~R~PAWTDRIL~r~e~---~--~~l~Y~~~e-l~~SDHRP 824 (1080)
T KOG0566|consen 751 QLTQQMNAGQVFPGFHEGQLTFPPTYKYDPGTDDYDTSEKCRTPAWTDRILWRGEK---L--ELLSYKRAE-LKTSDHRP 824 (1080)
T ss_pred HHHHHHhcCcccccccccccccCCcccccCCCCccccchhccCccchhhheecccc---c--ccccccccc-ccccCCCc
Confidence 99999999999999999999999999999999999999999999999999998875 2 578999875 99999999
Q ss_pred eEeEEEEEec
Q 038755 304 VKAHLCLTVN 313 (321)
Q Consensus 304 V~a~f~l~~~ 313 (321)
|+|.|.+++.
T Consensus 825 V~A~~~a~i~ 834 (1080)
T KOG0566|consen 825 VYAIFRAEIF 834 (1080)
T ss_pred eEEEEEEEEE
Confidence 9999999774
No 2
>smart00128 IPPc Inositol polyphosphate phosphatase, catalytic domain homologues. Mg(2+)-dependent/Li(+)-sensitive enzymes.
Probab=100.00 E-value=6e-77 Score=560.94 Aligned_cols=281 Identities=35% Similarity=0.593 Sum_probs=246.1
Q ss_pred ceeEEEEEEecCCCC--CcccHHHHhcc------CCCCceEEEeecCccch--------------hHHHHHHHHcC--CC
Q 038755 30 DLCICVVTWNMNGQV--SYEDLVELIGS------NRKFDLLIVGLQEVPRN--------------NIARLLKRAVA--ET 85 (321)
Q Consensus 30 ~l~v~v~TwNv~~~~--~~~~l~~~l~~------~~~~Di~viglQE~~~~--------------~~~~~l~~~l~--~~ 85 (321)
+++|+|+|||||+.. |++++.+||.. ..+||||||||||+++. .|.+.+...++ ..
T Consensus 2 ~~~v~v~TwNv~~~~~~p~~~l~~~l~~~~~~~~~~~pDI~viglQEi~~~~~~~~~~~~~~~~~~W~~~i~~~l~~~~~ 81 (310)
T smart00128 2 DIKVLVGTWNVGGLKADPKVDVTSWLFQKIDVKQSEKPDIYVIGLQEVVDLENGVLLETIAGKERLWSKLIESSLNGDGQ 81 (310)
T ss_pred ceEEEEEEEECCCccCCChhhHHHhhccccccccCCCCCEEEEEeeeecccchhhhhhccchhHHHHHHHHHHhcCCCCc
Confidence 689999999999964 77889999862 26799999999999432 25566777776 78
Q ss_pred cEEEEEeeeeeEEEEEEecCCCcccccceeeeeEeecCccccccccCceEEEEEEEcCeEEEEEeecCCCCCccHHHHHH
Q 038755 86 HDLFAKAIMQSLQLFVFGPRNSEPLVKELKLDKYSVGGFGGFIGRKKGAVAIRINYKGITMVFISCHLSAHARNVEERNS 165 (321)
Q Consensus 86 y~~v~~~~l~gi~l~vf~~~~~~~~i~~~~~~~~~~gg~gg~~g~nKGaV~v~~~i~~~~i~fin~HL~a~~~~~~~R~~ 165 (321)
|.++.+.+|+|++|+||++.++..+|+++.++.+++ |++|.+| |||||++++.+.+++|+||||||+||++++++|++
T Consensus 82 Y~~v~~~~l~gi~l~vf~~~~~~~~i~~v~~~~v~~-G~~~~~~-nKG~v~i~~~~~~~~~~fv~~HL~a~~~~~~~R~~ 159 (310)
T smart00128 82 YNVLAKVRLVGILVLVFVKANHLVYIKDVETFTVKT-GMGGLWG-NKGAVAVRFKLSDTSFCFVNSHLAAGASNVEQRNQ 159 (310)
T ss_pred eEEEeeeeecceEEEEEEehhhcCccceeEeeeeec-cccceee-cCceEEEEEEEcCcEEEEEeeccccccchhhhhHH
Confidence 999999999999999999999999999999988876 6788888 79999999999999999999999999999999999
Q ss_pred HHHHHHHhc-cCCCCCCCCCCcceEEEeccccccccCCCchhhHHHHhhhhHHHhhhhhHHHHHhhhcccCCccccCCcc
Q 038755 166 ECRHILHSL-FSKNQNPYAEPAQITVWLGDLNYRIQGLNTHPVRNIIHKDLQKLLTSKDQLLQEAERGQIFNGYCEGSLT 244 (321)
Q Consensus 166 ~~~~I~~~l-f~~~~~~~~~~~d~vf~~GDlNyRi~~~~~~~~~~~i~~~~~~~l~~~DQL~~~~~~~~~f~~f~E~~I~ 244 (321)
|+.+|++.+ |+........++|++|||||||||+++...++++++++++.+..|+++|||..+++++.+|.||.|++|+
T Consensus 160 ~~~~I~~~~~f~~~~~~~~~~~d~~f~~GDlNyRi~~~~~~~v~~~i~~~~~~~Ll~~DQL~~~~~~~~~f~~f~E~~I~ 239 (310)
T smart00128 160 DYKTILRALSFPERAELSQFDHDVVFWFGDLNFRLDSPSYEEVRRKISKKEFDDLLEKDQLNRQKEAGKVFKGFQEGPIT 239 (310)
T ss_pred HHHHHHHhcCCCCCccccccccceEEEecCcceeecCCCHHHHHHHHhhCcHHHHhhhhhHHHHhhcccccCcCccCCcC
Confidence 999999886 5443222235799999999999999994337899999998899999999999999999999999999999
Q ss_pred CCCCcccc-CCCCCCCCCCCCCCcccccceeeecCCCccccceeee-eeeccCCCccCCcceEeEEEEEecCC
Q 038755 245 FKPTYKYN-IGSSDYDTSYKVRVPSWTDRILFKIDDPDKINAALHS-YESIDDIYSSDHKPVKAHLCLTVNKH 315 (321)
Q Consensus 245 F~PTYK~~-~~s~~ydts~k~R~PsWcDRIL~~~~~~~~~~~~~~~-Y~s~~~~~~SDHkPV~a~f~l~~~~~ 315 (321)
|||||||+ .+++.||+++|+|+|||||||||++.. ..+ .... |.|++++.+||||||+|.|.|.+..-
T Consensus 240 F~PTYK~~~~~t~~Yd~~~k~R~PsWcDRIL~~~~~-~~~--~~~~~Y~s~~~~~~SDHkPV~~~f~v~~~~~ 309 (310)
T smart00128 240 FPPTYKYDSVGTETYDTSEKKRVPAWCDRILYRSNG-PNL--IQLSEYHSGMELTTSDHKPVFATFRLKVTAV 309 (310)
T ss_pred CCCCeeecCCCCccccCcccccCcchhheehhhccC-CCc--eecccccCCCccCCcCcccccEEEEEEEEec
Confidence 99999999 999999999999999999999998732 222 3333 99999999999999999999998754
No 3
>PLN03191 Type I inositol-1,4,5-trisphosphate 5-phosphatase 2; Provisional
Probab=100.00 E-value=2.3e-75 Score=573.39 Aligned_cols=223 Identities=29% Similarity=0.522 Sum_probs=200.8
Q ss_pred CcEEEEEeeeeeEEEEEEecCCCcccccceeeeeEeecCccccccccCceEEEEEEEcCeEEEEEeecCCCCCcc--HHH
Q 038755 85 THDLFAKAIMQSLQLFVFGPRNSEPLVKELKLDKYSVGGFGGFIGRKKGAVAIRINYKGITMVFISCHLSAHARN--VEE 162 (321)
Q Consensus 85 ~y~~v~~~~l~gi~l~vf~~~~~~~~i~~~~~~~~~~gg~gg~~g~nKGaV~v~~~i~~~~i~fin~HL~a~~~~--~~~ 162 (321)
.|+++.+.+|+||.|+||+|+++.++|++++++++++ |++|.+| |||||+|+|.+++++||||||||+||+++ .++
T Consensus 363 ~YvkV~S~qLvGl~L~VFvk~~l~~~Is~V~~s~V~t-Gl~G~~G-NKGAVaIr~~l~~Ts~cFVn~HLAAg~~~~~~~r 440 (621)
T PLN03191 363 KYVRIVSKQMVGIYVSVWVRKRLRRHINNLKVSPVGV-GLMGYMG-NKGSVSISMSLFQSRLCFVCSHLTSGHKDGAEQR 440 (621)
T ss_pred CEEEEEEEeeeeEEEEEEEehhhhhhcccceeeeEee-ccccccc-cceeEEEEEEEcCcEEEEEEeccccccccchHHH
Confidence 4888999999999999999999999999999999987 6889899 79999999999999999999999998854 678
Q ss_pred HHHHHHHHHHhc-cCCC----CCCCCCCcceEEEeccccccccCCCchhhHHHHhhhhHHHhhhhhHHHHHhhhcccCCc
Q 038755 163 RNSECRHILHSL-FSKN----QNPYAEPAQITVWLGDLNYRIQGLNTHPVRNIIHKDLQKLLTSKDQLLQEAERGQIFNG 237 (321)
Q Consensus 163 R~~~~~~I~~~l-f~~~----~~~~~~~~d~vf~~GDlNyRi~~~~~~~~~~~i~~~~~~~l~~~DQL~~~~~~~~~f~~ 237 (321)
||+|+.+|++.+ |... ....+.+||++||+|||||||++ +.++++++|+++.+..|+++|||.++++++.+|.|
T Consensus 441 RN~D~~~I~~~l~F~~~~~~~~~~~I~dhD~vFWlGDLNYRIdl-~~~ev~~lI~~~~~~~LL~~DQL~~e~~~g~vF~G 519 (621)
T PLN03191 441 RNADVYEIIRRTRFSSVLDTDQPQTIPSHDQIFWFGDLNYRLNM-LDTEVRKLVAQKRWDELINSDQLIKELRSGHVFDG 519 (621)
T ss_pred HHHHHHHHHhccccCcccccCCCccccccceEEEecCccccccC-CHHHHHHHHhhccHHHHHHHhHHHHHHHcCCccCC
Confidence 999999999875 6421 12234679999999999999999 77899999999999999999999999999999999
Q ss_pred cccCCccCCCCccccCCCCCCC-----CCCCCCCcccccceeeecCCCccccceeeeeeeccCCCccCCcceEeEEEEEe
Q 038755 238 YCEGSLTFKPTYKYNIGSSDYD-----TSYKVRVPSWTDRILFKIDDPDKINAALHSYESIDDIYSSDHKPVKAHLCLTV 312 (321)
Q Consensus 238 f~E~~I~F~PTYK~~~~s~~yd-----ts~k~R~PsWcDRIL~~~~~~~~~~~~~~~Y~s~~~~~~SDHkPV~a~f~l~~ 312 (321)
|.|++|+|||||||++|++.|| |++|+|+|||||||||++.. ++++.|.+ .++.+||||||+|.|.++|
T Consensus 520 F~Eg~I~FpPTYKYd~gSd~Ydg~~~~Ts~KkR~PSWCDRILykg~~-----i~~l~Y~s-~ei~~SDHRPV~A~F~v~V 593 (621)
T PLN03191 520 WKEGPIKFPPTYKYEINSDRYVGENPKEGEKKRSPAWCDRILWLGKG-----IKQLCYKR-SEIRLSDHRPVSSMFLVEV 593 (621)
T ss_pred cccCCccCCCCcccccCCccccccccccccCccccchhheEeecCCC-----ceEeEecc-CCcccCCchhcceEEEEEE
Confidence 9999999999999999999998 78999999999999998642 47789998 6899999999999999998
Q ss_pred cCCC
Q 038755 313 NKHS 316 (321)
Q Consensus 313 ~~~~ 316 (321)
..-+
T Consensus 594 ~~id 597 (621)
T PLN03191 594 EVFD 597 (621)
T ss_pred EecC
Confidence 6544
No 4
>COG5411 Phosphatidylinositol 5-phosphate phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=1.7e-64 Score=476.83 Aligned_cols=303 Identities=34% Similarity=0.492 Sum_probs=262.4
Q ss_pred CcCccchhhHhhhhhcCCcccCceeEEEEEEecCCCCCcccHHHHhc----cCCCCceEEEeecCccchh----------
Q 038755 8 VITREGIQTVAVENHCNFSRNSDLCICVVTWNMNGQVSYEDLVELIG----SNRKFDLLIVGLQEVPRNN---------- 73 (321)
Q Consensus 8 ~~~~~~i~~~~~~~~~~~~~~~~l~v~v~TwNv~~~~~~~~l~~~l~----~~~~~Di~viglQE~~~~~---------- 73 (321)
.+.++.|..++.+++.+|+..+++.++++|+|.++..+..+++.|+- ....+|+||+||||++..+
T Consensus 7 ~p~~~y~~~~l~~~~sk~~~~~~~~~f~~~~n~~~~~~k~~~k~~lfP~~~~~~~~dlyVvGlQEvv~lt~~sils~~p~ 86 (460)
T COG5411 7 DPRHPYIVAVLRQRRSKYVIEKDVSIFVSTFNPPGKPPKASTKRWLFPEIEATELADLYVVGLQEVVELTPGSILSADPY 86 (460)
T ss_pred CCCchhHHHHHHHHhhhheeecceeeEeccccCCCCCchhhhhhhcccccccccccceEEeccceeeeccchhhccCCcc
Confidence 56788899999999999999999999999999999999777888875 3457999999999997543
Q ss_pred -----HHHHHHHHc-----CCCcEEEEEeeeeeEEEEEEecCCCcccccceeeeeEeecCccccccccCceEEEEEEEcC
Q 038755 74 -----IARLLKRAV-----AETHDLFAKAIMQSLQLFVFGPRNSEPLVKELKLDKYSVGGFGGFIGRKKGAVAIRINYKG 143 (321)
Q Consensus 74 -----~~~~l~~~l-----~~~y~~v~~~~l~gi~l~vf~~~~~~~~i~~~~~~~~~~gg~gg~~g~nKGaV~v~~~i~~ 143 (321)
|.+.+.+.| .++|.++.+.+|+++.+.||++.+..+.+..+..+ ++.+|+||.-+ |||||++++.+..
T Consensus 87 ~rl~~wes~~~~~Ln~~~~~eky~~l~s~q~~~~~~~vf~~~~~~~v~~~V~~~-~~KtG~gg~s~-nKGav~i~~~~~~ 164 (460)
T COG5411 87 DRLRIWESKVLDCLNGAQSDEKYSLLRSPQLGGILLRVFSLATNLPVVKPVSGT-VKKTGFGGSSS-NKGAVAIRFNYER 164 (460)
T ss_pred cccchhHHHHHHHhcccccCCceEEecchhccCcceEEeeeccccceecccccc-ccccccceecc-cccccceeEEeec
Confidence 222222222 46899999999999999999999998888887754 44568998766 7999999999999
Q ss_pred eEEEEEeecCCCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcceEEEeccccccccCCCchhhHHHHhhhh--HHHhhh
Q 038755 144 ITMVFISCHLSAHARNVEERNSECRHILHSLFSKNQNPYAEPAQITVWLGDLNYRIQGLNTHPVRNIIHKDL--QKLLTS 221 (321)
Q Consensus 144 ~~i~fin~HL~a~~~~~~~R~~~~~~I~~~lf~~~~~~~~~~~d~vf~~GDlNyRi~~~~~~~~~~~i~~~~--~~~l~~ 221 (321)
+.+||||+||+||..|.++|+.||+.|.+.+....+ .-+.+||++||+|||||||++ .+++++..+.... ...|++
T Consensus 165 t~~cFv~shlaag~~N~eeR~~Dy~~I~~~i~f~~g-~~I~~hdti~w~GDlNyRVts-~~e~v~~~~~~~~g~~~~l~~ 242 (460)
T COG5411 165 TSFCFVNSHLAAGVNNIEERIFDYRSIASNICFSRG-LRIYDHDTIFWLGDLNYRVTS-TNEEVRPEIASDDGRLDKLFE 242 (460)
T ss_pred CCcEEEecchhcccccHHHHHHHHHHHHHheecCCC-ceecccceEEEecccCceeec-CchhcchhhhCCcchhhhhhh
Confidence 999999999999999999999999999999733221 225689999999999999999 6778877766543 566889
Q ss_pred hhHHHHHhhhcccCCccccCCccCCCCccccCCCCCCCCCCCCCCcccccceeeecCCCccccceeeeeeeccCCCccCC
Q 038755 222 KDQLLQEAERGQIFNGYCEGSLTFKPTYKYNIGSSDYDTSYKVRVPSWTDRILFKIDDPDKINAALHSYESIDDIYSSDH 301 (321)
Q Consensus 222 ~DQL~~~~~~~~~f~~f~E~~I~F~PTYK~~~~s~~ydts~k~R~PsWcDRIL~~~~~~~~~~~~~~~Y~s~~~~~~SDH 301 (321)
+|||.++++.+.+|.+|.|..|+|||||||+.|+++||++.|.|+||||||||+++.. .+.++|.+++.+..|||
T Consensus 243 ~DqL~~e~~~g~~f~~f~E~~i~FpPTYKfd~gt~~ydtsdk~RiPsWtDRIl~~s~~-----~~p~sY~sip~l~~SDH 317 (460)
T COG5411 243 YDQLLWEMEVGNVFPGFKEPVITFPPTYKFDYGTDEYDTSDKGRIPSWTDRILYKSEQ-----LTPHSYSSIPHLMISDH 317 (460)
T ss_pred hhhHhhhhcccccccceecccccCCCceEeecCCccccccccccCCchhhhhhhhccc-----cccccccccCceeecCC
Confidence 9999999999999999999999999999999999999999999999999999998874 36789999999999999
Q ss_pred cceEeEEEEEecCCCCCC
Q 038755 302 KPVKAHLCLTVNKHSSIT 319 (321)
Q Consensus 302 kPV~a~f~l~~~~~~~~~ 319 (321)
|||+|+|.+++...+|.+
T Consensus 318 rPV~a~~~~~i~~~d~~~ 335 (460)
T COG5411 318 RPVYATFRAKIKVVDPSK 335 (460)
T ss_pred CeEEEEEecceEEeCcch
Confidence 999999999887776653
No 5
>PTZ00312 inositol-1,4,5-triphosphate 5-phosphatase; Provisional
Probab=99.96 E-value=3.2e-30 Score=233.18 Aligned_cols=174 Identities=25% Similarity=0.328 Sum_probs=123.7
Q ss_pred ccccCceEEEEEEEcCeEEEEEeecCCCCCccHH-----------HHHHHHHHHHHhccCCCCCCCCCCcceEEEecccc
Q 038755 128 IGRKKGAVAIRINYKGITMVFISCHLSAHARNVE-----------ERNSECRHILHSLFSKNQNPYAEPAQITVWLGDLN 196 (321)
Q Consensus 128 ~g~nKGaV~v~~~i~~~~i~fin~HL~a~~~~~~-----------~R~~~~~~I~~~lf~~~~~~~~~~~d~vf~~GDlN 196 (321)
++ .||.+.++++++++.|+|||+||.++..|+. .|.+++.+++... .. ...+++++||+||||
T Consensus 65 wS-RKGfmrtrw~i~~t~fdfVNiHLFHDaSNl~A~~tSPSiYS~~RqrAL~~iL~r~-~~----~~~~~~~lF~fGDfN 138 (356)
T PTZ00312 65 RS-RKGFLLLSLRLGTVVVNVLNVHLYNDDDNRVAAASSPSLYTGQRQEALLEAIAEC-SA----FISPSDPLFIFGDFN 138 (356)
T ss_pred cc-ccceEEEEEEECCEEEEEEEeeccCCcchhhHHhcCCchhHHHHHHHHHHHHHHH-hh----ccCCCCcEEEeccce
Confidence 45 5999999999999999999999999998744 4678888888763 21 124678999999999
Q ss_pred ccccCCCchhhHH-H------Hh-h-----hhHHHhhhhhHHHHHhhh-------------cccCCccccCCccCCCCcc
Q 038755 197 YRIQGLNTHPVRN-I------IH-K-----DLQKLLTSKDQLLQEAER-------------GQIFNGYCEGSLTFKPTYK 250 (321)
Q Consensus 197 yRi~~~~~~~~~~-~------i~-~-----~~~~~l~~~DQL~~~~~~-------------~~~f~~f~E~~I~F~PTYK 250 (321)
||++.....+-.+ . ++ + .-+..|++.|||.+++++ .+.|.++.|.||+||||||
T Consensus 139 yRld~~~~~e~L~ek~Ql~ve~~~g~~~~P~hf~~Lf~~dQl~rE~~~fd~e~q~l~~~va~~s~~eLaE~pI~FpPTYk 218 (356)
T PTZ00312 139 VRLDGHNLLEWLKEKMQIDVKIEVKRVRAPDRFWELFTNPQTQGEIRRFDLELQRLMDVVAQQSGVELAEFAIRFPPTYP 218 (356)
T ss_pred eeeccccHHHHhcccccccccccccccCChHHHHHHhcChhhhHHHhhhhhhhhhhhhhhhhhcccchhcccccCCCcch
Confidence 9999743321111 0 00 1 124457789999999884 5667799999999999999
Q ss_pred ccC-----C-----------CCC---------CC---------------------------------CCCCCCCcccccc
Q 038755 251 YNI-----G-----------SSD---------YD---------------------------------TSYKVRVPSWTDR 272 (321)
Q Consensus 251 ~~~-----~-----------s~~---------yd---------------------------------ts~k~R~PsWcDR 272 (321)
-.. + +.. -| .+.+.|+||||||
T Consensus 219 rva~r~~~~~~~~~a~~~~~a~~~~~~d~~~~~~~~~~~~~~~~~~g~~d~i~~~~~l~~~ta~P~r~~~~~r~pawcdr 298 (356)
T PTZ00312 219 RVAERTNTGAQIESAGANVAASVYGVKDVAAKLDNQQRKKAAKDLKGTADAILASVVLTRVTAIPHRNYCRDRLPAWCDR 298 (356)
T ss_pred hhhhhcCCcchhhhcccccccchhcccccccccccccccchhhhccCccceeeeeeeeecccccCCcchhcccchhhhhe
Confidence 321 0 000 00 1246899999999
Q ss_pred eeeecCCCcc-----------------------ccceeeeeeeccCCCccCCcceEeEE
Q 038755 273 ILFKIDDPDK-----------------------INAALHSYESIDDIYSSDHKPVKAHL 308 (321)
Q Consensus 273 IL~~~~~~~~-----------------------~~~~~~~Y~s~~~~~~SDHkPV~a~f 308 (321)
|||.....+. -+...+-|+|. ++..+||.||+..|
T Consensus 299 vl~~~~~~~~~~~~r~~~a~~~~~aa~~~~~~~~~~~~~~Y~s~-~L~htDH~~V~~lF 356 (356)
T PTZ00312 299 VLWNPAGLELMTGDRSRSASPQSAAASKGDQASGQSCRYAYRSI-DLIHTDHDGVFLLF 356 (356)
T ss_pred eeechhhhhhhcCccccCCCcchhhhccCCcccchhhhheeeee-eeeeccCccceecC
Confidence 9997652100 01234668886 67899999998765
No 6
>KOG0565 consensus Inositol polyphosphate 5-phosphatase and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=4.9e-21 Score=161.65 Aligned_cols=137 Identities=28% Similarity=0.467 Sum_probs=112.0
Q ss_pred CcEEEEEeeeeeEEEEEEecCCCcccccceeeeeEeecCccccccccCceEEEEEEEcCeEEEEEeecCCCCCccHHH-H
Q 038755 85 THDLFAKAIMQSLQLFVFGPRNSEPLVKELKLDKYSVGGFGGFIGRKKGAVAIRINYKGITMVFISCHLSAHARNVEE-R 163 (321)
Q Consensus 85 ~y~~v~~~~l~gi~l~vf~~~~~~~~i~~~~~~~~~~gg~gg~~g~nKGaV~v~~~i~~~~i~fin~HL~a~~~~~~~-R 163 (321)
.|..+.+.+++++.+.+|++..+..++..+..+++++ |..+.+| |||+|++++.+.++.+||+++||+||.++..+ |
T Consensus 2 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~-g~~~~~~-nkg~v~is~~~~~~~~~~v~~hl~~~~~~~~~~r 79 (145)
T KOG0565|consen 2 LYVVVASGRLVGIDLSVLLRRDLLDHSFNVRVSEVGT-GIMGYLG-NKGGVAISFVLSQTSFCFVISHLTSGVHKVYERR 79 (145)
T ss_pred cEEEEeeeEEEEEEEEEEehhhhhhhhcccEEEEecc-eEEEEeC-CCCeEEEEEEEcCceEEEEEecccccchhhHHHh
Confidence 4788889999999999999999999999999998876 5567777 79999999999999999999999999999888 9
Q ss_pred HHHHHHHHHhc-cCCCC---CCCC--CCcceEEEeccccccccCCCchhhHHHHhhhhHHHhhhhh
Q 038755 164 NSECRHILHSL-FSKNQ---NPYA--EPAQITVWLGDLNYRIQGLNTHPVRNIIHKDLQKLLTSKD 223 (321)
Q Consensus 164 ~~~~~~I~~~l-f~~~~---~~~~--~~~d~vf~~GDlNyRi~~~~~~~~~~~i~~~~~~~l~~~D 223 (321)
++++.+|.... |.... .+.. ..+|.|||+||||||+...+..++..++....+..|++.|
T Consensus 80 ~~d~~~i~~~~~~~~~~~~~~~~~~~~~~D~v~w~GDlN~Rl~~~~~~~~~~~~~~~~~~~l~~~d 145 (145)
T KOG0565|consen 80 NEDYQEILNGLRFPSVSPASEPVISDGEHDTVIWLGDLNYRLSGPSYLEVRTLISVKSRDGLLEKD 145 (145)
T ss_pred hccHHHHHhhccccccCcccccccccccccEEEEecceeeeecCcccccchhhhhhcchhhhhccC
Confidence 99999999875 44322 1211 1279999999999999995455666666666665555443
No 7
>KOG1976 consensus Inositol polyphosphate 5-phosphatase, type I [Lipid transport and metabolism]
Probab=99.83 E-value=1.2e-20 Score=171.35 Aligned_cols=173 Identities=24% Similarity=0.396 Sum_probs=116.4
Q ss_pred ccccCceEEEEEEEcCeEEEEEeecCCCCCcc-----------HHHHHHHHHHHHHhccCCCCCCCCCCcceEEEecccc
Q 038755 128 IGRKKGAVAIRINYKGITMVFISCHLSAHARN-----------VEERNSECRHILHSLFSKNQNPYAEPAQITVWLGDLN 196 (321)
Q Consensus 128 ~g~nKGaV~v~~~i~~~~i~fin~HL~a~~~~-----------~~~R~~~~~~I~~~lf~~~~~~~~~~~d~vf~~GDlN 196 (321)
++ .||....+++|.|..|.|||.||-....| ...|.+++..++..+-.+. ...|.+|.+||||
T Consensus 154 ~~-rkg~~~~r~~I~~k~fdfVN~hLFhD~snla~~~sspt~ys~~R~~al~~vL~el~~~~-----~~~~~~fVfGdfN 227 (391)
T KOG1976|consen 154 NQ-RKGFLLARFRIHGKEFDFVNLHLFHDVSNLATKNSSPTKYSSKREQALEMVLKELDEEG-----LRNDAIFVFGDFN 227 (391)
T ss_pred hh-hccccceeEEEcCceeeeeehhhhcchhhhhhhcCChhhhhhhHHHHHHHHHHHHHhhc-----cCceEEEEecccc
Confidence 45 59999999999999999999999765544 2458888888888763321 2446899999999
Q ss_pred ccccCCCc----------hh--------hHHHH---------------hhhhH------------H-HhhhhhHHHHHhh
Q 038755 197 YRIQGLNT----------HP--------VRNII---------------HKDLQ------------K-LLTSKDQLLQEAE 230 (321)
Q Consensus 197 yRi~~~~~----------~~--------~~~~i---------------~~~~~------------~-~l~~~DQL~~~~~ 230 (321)
||++..+- .. +.++| ++..+ . .++.+|.-.
T Consensus 228 frLds~s~ln~l~a~q~~qtv~~~d~~~vv~~ifr~esd~drkv~l~vEkk~FDyfnh~~f~d~~r~~~~~~dkEl---- 303 (391)
T KOG1976|consen 228 FRLDSTSLLNYLAATQLVQTVAKKDEDGVVESIFRVESDGDRKVTLTVEKKRFDYFNHDWFFDLGRGMVKRYDKEL---- 303 (391)
T ss_pred cccchHHHHHHHhcCCccchhhhcccCcceeeEEeecccCCceeEEEeehhhcchhhhHHHHHcCchhhhhcchHH----
Confidence 99997311 00 11111 00000 0 111222111
Q ss_pred hcccCCc-cccCCccCCCCccccCCCCCCCCCCCCCCcccccceeeecCCCc-----cccceeeeeeec-cCCCccCCcc
Q 038755 231 RGQIFNG-YCEGSLTFKPTYKYNIGSSDYDTSYKVRVPSWTDRILFKIDDPD-----KINAALHSYESI-DDIYSSDHKP 303 (321)
Q Consensus 231 ~~~~f~~-f~E~~I~F~PTYK~~~~s~~ydts~k~R~PsWcDRIL~~~~~~~-----~~~~~~~~Y~s~-~~~~~SDHkP 303 (321)
..|.. ..|..|.|||||-|..+..+-.+-.+.|.||||||||+..+..+ ....+.+.|.+. ++...-||||
T Consensus 304 --~nf~~kl~E~~i~FpPsypysed~~~~E~~m~TrcPAWcDRILmn~~a~eLv~~~e~e~~~~~Y~~vg~e~c~GdHKp 381 (391)
T KOG1976|consen 304 --ANFAFKLKEETIFFPPSYPYSEDDSGKEEFMRTRCPAWCDRILMNDRANELVKHDEFEASGLYYGLVGEEKCVGDHKP 381 (391)
T ss_pred --HHHHHHHhheeecCCCCCCCCcCccchHHHHhccChHhhhhhhcCccHHHHhhccccCcccceecccccccccCCCcc
Confidence 12222 57889999999999876655444567899999999999665422 122345678875 6789999999
Q ss_pred eEeEEEEEe
Q 038755 304 VKAHLCLTV 312 (321)
Q Consensus 304 V~a~f~l~~ 312 (321)
|+..+++-.
T Consensus 382 Vfl~~~i~~ 390 (391)
T KOG1976|consen 382 VFLHASICL 390 (391)
T ss_pred eEEEEeecC
Confidence 999887643
No 8
>TIGR03395 sphingomy sphingomyelin phosphodiesterase. Members of this family are bacterial proteins that act as sphingomyelin phosphodiesterase (EC 3.1.4.12), also called sphingomyelinase. Some members of this family have been shown to act as hemolysins.
Probab=99.66 E-value=1.3e-14 Score=135.62 Aligned_cols=214 Identities=18% Similarity=0.218 Sum_probs=119.5
Q ss_pred CCCCceEEEeecCccchhHHHHHHHHcCCCcEE----EE--------------EeeeeeEEEEEEecCCCcccccceeee
Q 038755 56 NRKFDLLIVGLQEVPRNNIARLLKRAVAETHDL----FA--------------KAIMQSLQLFVFGPRNSEPLVKELKLD 117 (321)
Q Consensus 56 ~~~~Di~viglQE~~~~~~~~~l~~~l~~~y~~----v~--------------~~~l~gi~l~vf~~~~~~~~i~~~~~~ 117 (321)
...||| |||||+-.......+.+.+.+.|.. ++ ......-+++|++|..+......
T Consensus 34 ~~~~DV--V~LQEv~~~~~~~~l~~~L~~~yp~~~~~~g~~~~g~~~~~g~~~~~~~~~~G~~iLSr~Pi~~~~~~---- 107 (283)
T TIGR03395 34 IKNQDV--VILNEAFDTSASKRLLDNLREEYPYQTDVIGRSKKGWDKTLGNYSSSALEDGGVAIVSKWPIEEKIQY---- 107 (283)
T ss_pred ccCCCE--EEEecccchHHHHHHHHHHHhhCCceEeecccccccchhccccccccCccCCEEEEEECCCccccEEE----
Confidence 458999 8899997655444344444333321 11 11234567889999887642111
Q ss_pred eEeecCccc-cccccCceEEEEEEEcCeEEEEEeecCCCCC------ccHHHHHHHHHHHHHhccCCCCCCCCCCcceEE
Q 038755 118 KYSVGGFGG-FIGRKKGAVAIRINYKGITMVFISCHLSAHA------RNVEERNSECRHILHSLFSKNQNPYAEPAQITV 190 (321)
Q Consensus 118 ~~~~gg~gg-~~g~nKGaV~v~~~i~~~~i~fin~HL~a~~------~~~~~R~~~~~~I~~~lf~~~~~~~~~~~d~vf 190 (321)
.... +++. ... +||++.+++...+..+.++|+||.+.. .....|..|+.+|.+.+-... ....+.+|
T Consensus 108 ~f~~-~~~~d~~~-~kg~l~a~i~~~g~~~~v~~THL~~~~~~~~~~~~~~~R~~Q~~~i~~~i~~~~----~~~~~pvI 181 (283)
T TIGR03395 108 IFNK-GCGADNLS-NKGFAYVKINKNGKKFHVIGTHLQAQDSMCSKLGPASIRANQLNEIQDFIDSKN----IPKDETVL 181 (283)
T ss_pred EccC-CCCCcccc-CCceEEEEEecCCeEEEEEEeCCCCCcccccccccHHHHHHHHHHHHHHHhhcc----CCCCceEE
Confidence 1211 2221 122 699999999999999999999999753 124679999999987652211 11235699
Q ss_pred EeccccccccCCCchhhHHHHhhhhHHHhhhhhHHHHHhhhcccCCccccCCccCCCCccccCCCCCCCCC-CCCCCccc
Q 038755 191 WLGDLNYRIQGLNTHPVRNIIHKDLQKLLTSKDQLLQEAERGQIFNGYCEGSLTFKPTYKYNIGSSDYDTS-YKVRVPSW 269 (321)
Q Consensus 191 ~~GDlNyRi~~~~~~~~~~~i~~~~~~~l~~~DQL~~~~~~~~~f~~f~E~~I~F~PTYK~~~~s~~ydts-~k~R~PsW 269 (321)
++||||..-+. .+...+ ........ .+|. .|.|-||...+.+... ..+--|.+
T Consensus 182 l~GDfN~~~~s---~~~~~m---------------l~~l~~~~--p~~~------g~~~T~d~~~N~~a~~~~~~~~~~~ 235 (283)
T TIGR03395 182 IGGDLNVNKGS---NEYHDM---------------FKTLNVSE--PRYV------GVPATWDATTNSIAKYYYPKEEPEY 235 (283)
T ss_pred EEeeCCCCCCC---HHHHHH---------------HHHhcccC--CCcC------CCCCCcCCCcCchhhhhcCCCCcce
Confidence 99999965433 222222 11111110 1121 2344456555433210 01123567
Q ss_pred ccceeeecCCCc--cccc---eeee----eeeccCCCccCCcceEeE
Q 038755 270 TDRILFKIDDPD--KINA---ALHS----YESIDDIYSSDHKPVKAH 307 (321)
Q Consensus 270 cDRIL~~~~~~~--~~~~---~~~~----Y~s~~~~~~SDHkPV~a~ 307 (321)
.||||++..... .+.. .+.+ +.+......|||.||.|.
T Consensus 236 lDyvl~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~sdh~~v~~~ 282 (283)
T TIGR03395 236 LDYIFVSKSHAQPPVWQNKVLDPKSVTSWFKKYTYDDFSDHYPVYGF 282 (283)
T ss_pred EEEEEEECCCCCCccccceEEeccccccccccccccccccccceeee
Confidence 999999865421 1111 1111 112256689999999984
No 9
>PRK11756 exonuclease III; Provisional
Probab=99.61 E-value=6.4e-15 Score=136.15 Aligned_cols=148 Identities=15% Similarity=0.198 Sum_probs=83.7
Q ss_pred EEEEEEecCCCCCc-ccHHHHhccCCCCceEEEeecCccchhHH--HHHHHHcCCCcEEEEEeeeeeEEEEEEecCCCcc
Q 038755 33 ICVVTWNMNGQVSY-EDLVELIGSNRKFDLLIVGLQEVPRNNIA--RLLKRAVAETHDLFAKAIMQSLQLFVFGPRNSEP 109 (321)
Q Consensus 33 v~v~TwNv~~~~~~-~~l~~~l~~~~~~Di~viglQE~~~~~~~--~~l~~~l~~~y~~v~~~~l~gi~l~vf~~~~~~~ 109 (321)
+.|+||||++.... +.+.++|. ...||| |||||+...... ..+...++ |......+-+..+.+|++|.++..
T Consensus 1 mri~T~Nv~g~~~~~~~i~~~i~-~~~pDI--i~LQE~~~~~~~~~~~~~~~~g--y~~~~~~~~~~~GvailSr~p~~~ 75 (268)
T PRK11756 1 MKFVSFNINGLRARPHQLEAIIE-KHQPDV--IGLQETKVHDEMFPLEEVEALG--YHVFYHGQKGHYGVALLSKQTPIA 75 (268)
T ss_pred CEEEEEEcCCHHHHHHHHHHHHH-hcCCCE--EEEEecccccccCCHHHHHhcC--CEEEEeCCCCCCEEEEEECCChHH
Confidence 36899999985432 34677885 678999 779998532211 11112233 433322233445677888876542
Q ss_pred cccceeeeeEeecCcccc-ccccCceEEEEEEEcCeEEEEEeecCCCCCc-----cHHHHHHHHHHHHHhccCCCCCCCC
Q 038755 110 LVKELKLDKYSVGGFGGF-IGRKKGAVAIRINYKGITMVFISCHLSAHAR-----NVEERNSECRHILHSLFSKNQNPYA 183 (321)
Q Consensus 110 ~i~~~~~~~~~~gg~gg~-~g~nKGaV~v~~~i~~~~i~fin~HL~a~~~-----~~~~R~~~~~~I~~~lf~~~~~~~~ 183 (321)
+. . ++.+. .....+++.+.+...+..+.++|+|++.+.. +...|.+.+..+...+-.. .
T Consensus 76 ----~~-----~-~~~~~~~~~~~r~l~~~i~~~~g~~~v~n~y~P~~~~~~~~~~~~~r~~~~~~l~~~l~~~-----~ 140 (268)
T PRK11756 76 ----VR-----K-GFPTDDEEAQRRIIMATIPTPNGNLTVINGYFPQGESRDHPTKFPAKRQFYQDLQNYLETE-----L 140 (268)
T ss_pred ----eE-----E-CCCCccccccCCEEEEEEEcCCCCEEEEEEEecCCCCCCcchhHHHHHHHHHHHHHHHHHH-----h
Confidence 11 0 11110 0113578888888765569999999986542 2334555555554433111 0
Q ss_pred CCcceEEEecccccccc
Q 038755 184 EPAQITVWLGDLNYRIQ 200 (321)
Q Consensus 184 ~~~d~vf~~GDlNyRi~ 200 (321)
.....+|++||||.-.+
T Consensus 141 ~~~~pvIl~GDfN~~~~ 157 (268)
T PRK11756 141 SPDNPLLIMGDMNISPT 157 (268)
T ss_pred ccCCCEEEEeecccCCC
Confidence 12245999999996544
No 10
>PRK05421 hypothetical protein; Provisional
Probab=99.55 E-value=4.4e-13 Score=123.91 Aligned_cols=145 Identities=16% Similarity=0.119 Sum_probs=86.0
Q ss_pred eEEEEEEecCCCCCc---ccHHHHhccCCCCceEEEeecCccchhHHHHHHHHcCCCcEEE--EEeeeeeEEEEEEecCC
Q 038755 32 CICVVTWNMNGQVSY---EDLVELIGSNRKFDLLIVGLQEVPRNNIARLLKRAVAETHDLF--AKAIMQSLQLFVFGPRN 106 (321)
Q Consensus 32 ~v~v~TwNv~~~~~~---~~l~~~l~~~~~~Di~viglQE~~~~~~~~~l~~~l~~~y~~v--~~~~l~gi~l~vf~~~~ 106 (321)
.+.|+||||.+.... .++. .+ ...||| |||||+........+....+-.|... ....-+..+.++++|..
T Consensus 43 ~lri~t~NI~~~~~~~~~~~l~-~l--~~~~Di--I~LQEv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvaiLSR~p 117 (263)
T PRK05421 43 RLRLLVWNIYKQQRAGWLSVLK-NL--GKDADL--VLLQEAQTTPELVQFATANYLAADQAPAFVLPQHPSGVMTLSKAH 117 (263)
T ss_pred ceeEEEEEccccccccHHHHHH-Hh--ccCCCE--EEEEecccCcchHHHhhcccchHHhccccccCCCccceeEeeecc
Confidence 468999999876543 1233 33 568999 78999864322111112222222111 11122345777888876
Q ss_pred CcccccceeeeeEeecCccccccccCceEEEEEEE-cCeEEEEEeecCCCCCccHHHHHHHHHHHHHhccCCCCCCCCCC
Q 038755 107 SEPLVKELKLDKYSVGGFGGFIGRKKGAVAIRINY-KGITMVFISCHLSAHARNVEERNSECRHILHSLFSKNQNPYAEP 185 (321)
Q Consensus 107 ~~~~i~~~~~~~~~~gg~gg~~g~nKGaV~v~~~i-~~~~i~fin~HL~a~~~~~~~R~~~~~~I~~~lf~~~~~~~~~~ 185 (321)
+... ..+ . +-....+..||++.+.+.+ ++..+.++|+||.+.......|..|+..|.+.+-. .
T Consensus 118 i~~~-~~~-----~--~~~~~~~~~r~~l~a~~~~~~g~~l~v~ntHl~~~~~~~~~r~~q~~~l~~~~~~--------~ 181 (263)
T PRK05421 118 PVYC-CPL-----R--EREPWLRLPKSALITEYPLPNGRTLLVVNIHAINFSLGVDVYSKQLEPIGDQIAH--------H 181 (263)
T ss_pred ccee-ecc-----C--CCCccccCcceeEEEEEEeCCCCEEEEEEECccccCcChHHHHHHHHHHHHHHHh--------C
Confidence 5421 111 0 1011011138999999988 56789999999987544456788898888776421 1
Q ss_pred cceEEEeccccc
Q 038755 186 AQITVWLGDLNY 197 (321)
Q Consensus 186 ~d~vf~~GDlNy 197 (321)
...+|++||||-
T Consensus 182 ~~p~Il~GDFN~ 193 (263)
T PRK05421 182 SGPVILAGDFNT 193 (263)
T ss_pred CCCEEEEccccc
Confidence 235999999994
No 11
>PF03372 Exo_endo_phos: Endonuclease/Exonuclease/phosphatase family Subset of Pfam family Subset of Pfam family; InterPro: IPR005135 This domain is found in a large number of proteins including magnesium dependent endonucleases and phosphatases involved in intracellular signalling []. Proteins this domain is found in include: AP endonuclease proteins (4.2.99.18 from EC), DNase I proteins (3.1.21.1 from EC), Synaptojanin an inositol-1,4,5-trisphosphate phosphatase (3.1.3.56 from EC) and Sphingomyelinase (3.1.4.12 from EC).; PDB: 2J63_A 2JC4_A 3TEB_B 3MTC_A 3N9V_B 1ZWX_A 2F1N_A 1Y21_A 1NTF_A 2IMQ_X ....
Probab=99.40 E-value=4.1e-12 Score=112.41 Aligned_cols=154 Identities=19% Similarity=0.249 Sum_probs=80.3
Q ss_pred EEEecCCCCCc-------ccHHHHhccCCCCceEEEeecCccchhHHHHHHHHcCCCc--EEEEEeee------eeEEEE
Q 038755 36 VTWNMNGQVSY-------EDLVELIGSNRKFDLLIVGLQEVPRNNIARLLKRAVAETH--DLFAKAIM------QSLQLF 100 (321)
Q Consensus 36 ~TwNv~~~~~~-------~~l~~~l~~~~~~Di~viglQE~~~~~~~~~l~~~l~~~y--~~v~~~~l------~gi~l~ 100 (321)
+||||.+..+. ..+.++|. ...||| |+|||+......+.+...+...+ .......- .+.+++
T Consensus 1 ~T~Nv~~~~~~~~~~~~~~~i~~~i~-~~~~Di--i~LQEv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 77 (249)
T PF03372_consen 1 MTWNVRGWNYRSDNDRKRREIAQWIA-ELDPDI--IALQEVRNDDLSELLEEQLRGYLGYYGSFWPGNSPPSDAGGYGVA 77 (249)
T ss_dssp EEEEESTHHHHHHHHHHHHHHHHHHH-HHT-SE--EEEEEEESHHHHHHHHHHHHTCTTHEEEEEETSSSTTCSSSEEEE
T ss_pred CeEEeCcCcccccchhHHHHHHHHHH-hcCCCE--EEEecchhhhhhhhhhhhcccccccccceeccccccccccCceEE
Confidence 69999992211 12666774 456998 77999986544444444443222 22221111 357889
Q ss_pred EEecCCCcccccceeeeeEeecCccc--cccccCceEEEEEEEcCeEEEEEeecCCCCCccHHHHHHHHHHHHHhccCCC
Q 038755 101 VFGPRNSEPLVKELKLDKYSVGGFGG--FIGRKKGAVAIRINYKGITMVFISCHLSAHARNVEERNSECRHILHSLFSKN 178 (321)
Q Consensus 101 vf~~~~~~~~i~~~~~~~~~~gg~gg--~~g~nKGaV~v~~~i~~~~i~fin~HL~a~~~~~~~R~~~~~~I~~~lf~~~ 178 (321)
++.|.++............ ..+... .....++.+.+++. +..|+++++|+.+....-+.+..++...+..+....
T Consensus 78 i~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (249)
T PF03372_consen 78 ILSRSPIFSSVSYVFSLFS-KPGIRIFRRSSKSKGIVPVSIN--GKPITVVNVHLPSSNDERQEQWRELLARIQKIYADN 154 (249)
T ss_dssp EEESSCCCEEEEEEEEEES-SSTTCEEEEEEEEEEEEEEEEE--TEEEEEEEEETTSHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred EEEcccccccccccccccc-cccccccccccccccccccccc--ceEEEeeeccccccchhhhhhhhhhhhhhhhccccc
Confidence 9999886643333221110 111110 01113455555544 899999999999854332222223333333322111
Q ss_pred CCCCCCCcceEEEeccccccccC
Q 038755 179 QNPYAEPAQITVWLGDLNYRIQG 201 (321)
Q Consensus 179 ~~~~~~~~d~vf~~GDlNyRi~~ 201 (321)
....+|++||||.+.+.
T Consensus 155 ------~~~~~iv~GDfN~~~~~ 171 (249)
T PF03372_consen 155 ------PNEPVIVMGDFNSRPDS 171 (249)
T ss_dssp ------SCCEEEEEEE-SS-BSS
T ss_pred ------ccceEEEEeecccCCcc
Confidence 11269999999988876
No 12
>TIGR00633 xth exodeoxyribonuclease III (xth). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.34 E-value=3e-11 Score=110.06 Aligned_cols=146 Identities=14% Similarity=0.241 Sum_probs=77.3
Q ss_pred EEEEEEecCCCCC-cccH-HHHhccCCCCceEEEeecCccchhHHHHHHHH-cCCCcEEEEEee--eeeEEEEEEecCCC
Q 038755 33 ICVVTWNMNGQVS-YEDL-VELIGSNRKFDLLIVGLQEVPRNNIARLLKRA-VAETHDLFAKAI--MQSLQLFVFGPRNS 107 (321)
Q Consensus 33 v~v~TwNv~~~~~-~~~l-~~~l~~~~~~Di~viglQE~~~~~~~~~l~~~-l~~~y~~v~~~~--l~gi~l~vf~~~~~ 107 (321)
+.|+||||++... .+.+ .+++. ...||| ++|||+.... ..+.... ....|..+.... -+.-+++|++|..+
T Consensus 1 lri~t~Nv~g~~~~~~~~~~~~l~-~~~~DI--v~LQE~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~G~ailsr~~~ 76 (255)
T TIGR00633 1 MKIISWNVNGLRARLHKLFLDWLK-EEQPDV--LCLQETKVAD-EQFPAELFEELGYHVFFHGAKSKGYSGVAILSKVEP 76 (255)
T ss_pred CEEEEEecccHHHHhhccHHHHHH-hcCCCE--EEEEeccCch-hhCCHhHhccCCceEEEeecccCCcceEEEEEcCCc
Confidence 3689999998654 2344 77884 678999 7799997543 2211111 112343322111 12235667788664
Q ss_pred cccccceeeeeEeecCccccccccCceEEEEEEEcCeEEEEEeecCCCCC----ccHHHHHHHHHHHHHhccCCCCCCCC
Q 038755 108 EPLVKELKLDKYSVGGFGGFIGRKKGAVAIRINYKGITMVFISCHLSAHA----RNVEERNSECRHILHSLFSKNQNPYA 183 (321)
Q Consensus 108 ~~~i~~~~~~~~~~gg~gg~~g~nKGaV~v~~~i~~~~i~fin~HL~a~~----~~~~~R~~~~~~I~~~lf~~~~~~~~ 183 (321)
.. +. . ++........|. .+.+.+ ..+.++++|+++.. +....|.+.+..+.+.+... .
T Consensus 77 ~~----~~-----~-~~~~~~~~~~~r-~l~~~~--~~~~i~~vy~p~~~~~~~~~~~~r~~~~~~l~~~~~~~-----~ 138 (255)
T TIGR00633 77 LD----VR-----Y-GFGGEEHDEEGR-VITAEF--DGFTVVNVYVPNGGSRGLERLEYKLQFWDALFQYYEKE-----L 138 (255)
T ss_pred ce----EE-----E-CCCCCcccCCCc-EEEEEE--CCEEEEEEEccCCCCCCchhHHHHHHHHHHHHHHHHHH-----H
Confidence 32 11 1 111110112332 333333 46889999998765 22455666666555432110 0
Q ss_pred CCcceEEEecccccccc
Q 038755 184 EPAQITVWLGDLNYRIQ 200 (321)
Q Consensus 184 ~~~d~vf~~GDlNyRi~ 200 (321)
.....+|++||||...+
T Consensus 139 ~~~~~~Il~GDFN~~~~ 155 (255)
T TIGR00633 139 DAGKPVIICGDMNVAHT 155 (255)
T ss_pred hcCCcEEEEeecccCCC
Confidence 12246999999996553
No 13
>COG3568 ElsH Metal-dependent hydrolase [General function prediction only]
Probab=99.29 E-value=2.1e-10 Score=104.64 Aligned_cols=149 Identities=21% Similarity=0.218 Sum_probs=83.8
Q ss_pred CceeEEEEEEecCCCCCcc----c---HHHHhccCCCCceEEEeecCccc--h-------hHHHHHHHHcCCCcEEEEE-
Q 038755 29 SDLCICVVTWNMNGQVSYE----D---LVELIGSNRKFDLLIVGLQEVPR--N-------NIARLLKRAVAETHDLFAK- 91 (321)
Q Consensus 29 ~~l~v~v~TwNv~~~~~~~----~---l~~~l~~~~~~Di~viglQE~~~--~-------~~~~~l~~~l~~~y~~v~~- 91 (321)
+..++.++|||+.-..+.. + +.+.+ .+..+|| +||||+.. . ++...+....+..|..-..
T Consensus 6 ~~~~~~v~TyNih~~~~~~d~r~~~~r~~~~i-~~~~~Di--v~LQEv~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 82 (259)
T COG3568 6 QQARFKVLTYNIHKGFGAFDRRFDLPRIAEVI-REVGADI--VALQEVDGAFGRHRDGLLDLPHLLGRLGLAPYWWSGAA 82 (259)
T ss_pred hcceeEEEEEEEEEccCccCceecHHHHHHHH-HhhccCe--eeeecccccccccccccchhHHHHHHhcCCccccchhh
Confidence 3445889999998655542 2 33444 3556999 88999974 1 1222222222211111000
Q ss_pred ----eeeeeEEEEEEecCCCcccccceeeeeEeecCccccccccCceEEEEEEEc-CeEEEEEeecCCCCCccHHHHHHH
Q 038755 92 ----AIMQSLQLFVFGPRNSEPLVKELKLDKYSVGGFGGFIGRKKGAVAIRINYK-GITMVFISCHLSAHARNVEERNSE 166 (321)
Q Consensus 92 ----~~l~gi~l~vf~~~~~~~~i~~~~~~~~~~gg~gg~~g~nKGaV~v~~~i~-~~~i~fin~HL~a~~~~~~~R~~~ 166 (321)
.....-+-.|..+-. +.++....+.. .++.. -+|++-+.+... +..+.++|+||+-.+ +.|.+|
T Consensus 83 ~~a~~~~~~~GnaiLS~~p----i~~v~~~~lp~--~~~~~--~Rgal~a~~~~~~g~~l~V~~~HL~l~~---~~R~~Q 151 (259)
T COG3568 83 FGAVYGEGQHGNAILSRLP----IRDVENLALPD--PTGLE--PRGALLAEIELPGGKPLRVINAHLGLSE---ESRLRQ 151 (259)
T ss_pred hhhhcccceeeeEEEecCc----ccchhhccCCC--CCCCC--CceeEEEEEEcCCCCEEEEEEEeccccH---HHHHHH
Confidence 111122223334322 22332222221 12332 489999999984 779999999999543 479999
Q ss_pred HHHHHHhc-cCCCCCCCCCCcceEEEeccccccc
Q 038755 167 CRHILHSL-FSKNQNPYAEPAQITVWLGDLNYRI 199 (321)
Q Consensus 167 ~~~I~~~l-f~~~~~~~~~~~d~vf~~GDlNyRi 199 (321)
+..|.+.. .. ....++++||||---
T Consensus 152 ~~~L~~~~~l~--------~~~p~vl~GDFN~~p 177 (259)
T COG3568 152 AAALLALAGLP--------ALNPTVLMGDFNNEP 177 (259)
T ss_pred HHHHHhhccCc--------ccCceEEEccCCCCC
Confidence 99998842 11 112699999999333
No 14
>PTZ00297 pantothenate kinase; Provisional
Probab=99.27 E-value=5.8e-10 Score=123.23 Aligned_cols=159 Identities=18% Similarity=0.182 Sum_probs=87.3
Q ss_pred eeEEEEEEecCCCCC------cccHHHHhccCCCCceEEEeecCccchh-----------HHHHHHHHc---CCCcEEEE
Q 038755 31 LCICVVTWNMNGQVS------YEDLVELIGSNRKFDLLIVGLQEVPRNN-----------IARLLKRAV---AETHDLFA 90 (321)
Q Consensus 31 l~v~v~TwNv~~~~~------~~~l~~~l~~~~~~Di~viglQE~~~~~-----------~~~~l~~~l---~~~y~~v~ 90 (321)
-.+.|+||||+...+ .+++..++..-..||| |||||+.... ..+.+.+.+ +-.|..+.
T Consensus 9 ~~l~VlTyNv~~~~~~~~~~~~~ri~~~i~~l~~~DI--v~lQEvf~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 86 (1452)
T PTZ00297 9 AQARVLSYNFNILPRGCGGFQHERIETFLASVDAYDV--VLLQEVYAASVLPYFLQKQLCFQKMLVDELKARGFHHYVIS 86 (1452)
T ss_pred CceEEEEEEccccCCCcccccHHHHHHHHHhccCCCE--EEEecccccccccccccccchhhHHHHHHHHhcCCceeEee
Confidence 368899999973321 2356667752257899 8899997532 111222222 32333221
Q ss_pred E-e---------eeeeEEEEEEecCCCcccccceeeeeEeecCccccccccCceEEEEEEEc----C-eEEEEEeecCCC
Q 038755 91 K-A---------IMQSLQLFVFGPRNSEPLVKELKLDKYSVGGFGGFIGRKKGAVAIRINYK----G-ITMVFISCHLSA 155 (321)
Q Consensus 91 ~-~---------~l~gi~l~vf~~~~~~~~i~~~~~~~~~~gg~gg~~g~nKGaV~v~~~i~----~-~~i~fin~HL~a 155 (321)
. . ....-+++|++|.++... .... +...+.+-... +||++-+.+.+. + ..+.++|+||.+
T Consensus 87 ~~~~~~~~~~~~~~~~~G~AILSR~PI~~~-~~~~---l~~~~~~~~~~-~RG~L~a~I~vp~~~g~~~~v~v~~tHL~~ 161 (1452)
T PTZ00297 87 KQPSYLTMLRYNVCSDNGLIIASRFPIWQR-GSYT---FRNHERGEQSV-RRGCLFAEVEVPLAEGGSQRIVFFNVHLRQ 161 (1452)
T ss_pred cCccccccccCccccCCEEEEEECCChhhc-eeee---cCccccccccc-ccceEEEEEEccccCCCCceEEEEEeCCCC
Confidence 1 1 124557888999887632 2222 21111111112 699999999884 2 579999999998
Q ss_pred CCccHHHHHHHHHHHHHhccC---C-CCCCCCCCcceEEEeccccc
Q 038755 156 HARNVEERNSECRHILHSLFS---K-NQNPYAEPAQITVWLGDLNY 197 (321)
Q Consensus 156 ~~~~~~~R~~~~~~I~~~lf~---~-~~~~~~~~~d~vf~~GDlNy 197 (321)
.... ..|.+|+.++.+-+-. . ...........+|++||||-
T Consensus 162 ~~~~-~~R~~Q~~ql~~~i~~~i~~~~~~~~~~~~~PvILaGDFN~ 206 (1452)
T PTZ00297 162 EDSL-PSTSSQVQETRRFVESVIANVYEQNNDGAEIPFVIAGDFNI 206 (1452)
T ss_pred CCCc-chHHHHHHHHHHHHHHhhhhhcccccCCCCCCEEEEeeCCC
Confidence 7543 2344555544433211 0 00000113347999999994
No 15
>KOG2756 consensus Predicted Mg2+-dependent phosphodiesterase TTRAP [Signal transduction mechanisms]
Probab=99.27 E-value=9.4e-11 Score=105.93 Aligned_cols=154 Identities=17% Similarity=0.281 Sum_probs=95.5
Q ss_pred eeEEEEEEecCCCCCcc---c---HHHHhccCCCCceEEEeecCccchhHHHHHHHHcCCCcEEEEEeeeeeEEEEEEec
Q 038755 31 LCICVVTWNMNGQVSYE---D---LVELIGSNRKFDLLIVGLQEVPRNNIARLLKRAVAETHDLFAKAIMQSLQLFVFGP 104 (321)
Q Consensus 31 l~v~v~TwNv~~~~~~~---~---l~~~l~~~~~~Di~viglQE~~~~~~~~~l~~~l~~~y~~v~~~~l~gi~l~vf~~ 104 (321)
.-+.+.|||+.|..... . +..++ ...+||| |+|||+.+.... .+.+ ....|..+....-+....++.++
T Consensus 98 ~~~S~~~WnidgLdln~l~~RMrAv~H~i-~l~sPdi--iflQEV~p~~y~-~~~K-~~s~y~i~~~~~~~~~~~~~l~~ 172 (349)
T KOG2756|consen 98 SMFSLITWNIDGLDLNNLSERMRAVCHYL-ALYSPDV--IFLQEVIPPYYS-YLKK-RSSNYEIITGHEEGYFTAIMLKK 172 (349)
T ss_pred cEEEEEEeeccccccchHHHHHHHHHHHH-HhcCCCE--EEEeecCchhhH-HHHH-hhhheeEEEeccceeeeeeeeeh
Confidence 34889999999987652 1 23455 4679999 779999876433 3333 33345555444433333333333
Q ss_pred CCCcccccceeeeeEeecCcc-ccccccCceEEEEEEEcCeEEEEEeecCCCCCccHHHHHHHHHHHHHhccCCCCCCCC
Q 038755 105 RNSEPLVKELKLDKYSVGGFG-GFIGRKKGAVAIRINYKGITMVFISCHLSAHARNVEERNSECRHILHSLFSKNQNPYA 183 (321)
Q Consensus 105 ~~~~~~i~~~~~~~~~~gg~g-g~~g~nKGaV~v~~~i~~~~i~fin~HL~a~~~~~~~R~~~~~~I~~~lf~~~~~~~~ 183 (321)
+.+. ++..++ + .|+ ..|| +-...+...+.|..++|+|+||.+..+.-.+|.+|+...++..-.... .
T Consensus 173 s~~~--Vks~~~--i---~F~NS~M~--R~L~I~Ev~v~G~Kl~l~tsHLEStr~h~P~r~~qF~~~~~k~~EaIe---~ 240 (349)
T KOG2756|consen 173 SRVK--VKSQEI--I---PFPNSKMM--RNLLIVEVNVSGNKLCLMTSHLESTRGHAPERMNQFKMVLKKMQEAIE---S 240 (349)
T ss_pred hhcC--ccccce--e---ccCcchhh--heeEEEEEeecCceEEEEeccccCCCCCChHHHHHHHHHHHHHHHHHH---h
Confidence 3221 111111 2 222 2244 346677888999999999999999998888888888866655311100 0
Q ss_pred CCcceEEEeccccccccC
Q 038755 184 EPAQITVWLGDLNYRIQG 201 (321)
Q Consensus 184 ~~~d~vf~~GDlNyRi~~ 201 (321)
.+.-.|||.||+|.|-..
T Consensus 241 lPnA~ViFGGD~NlrD~e 258 (349)
T KOG2756|consen 241 LPNATVIFGGDTNLRDRE 258 (349)
T ss_pred CCCceEEEcCcccchhhh
Confidence 123359999999999776
No 16
>TIGR00195 exoDNase_III exodeoxyribonuclease III. The model brings in reverse transcriptases at scores below 50, model also contains eukaryotic apurinic/apyrimidinic endonucleases which group in the same family
Probab=99.27 E-value=1.4e-10 Score=106.33 Aligned_cols=145 Identities=14% Similarity=0.188 Sum_probs=77.0
Q ss_pred EEEEEEecCCCCC-cccHHHHhccCCCCceEEEeecCccchhH--HHHHHHHcCCCcEEEEEeeeeeEEEEEEecCCCcc
Q 038755 33 ICVVTWNMNGQVS-YEDLVELIGSNRKFDLLIVGLQEVPRNNI--ARLLKRAVAETHDLFAKAIMQSLQLFVFGPRNSEP 109 (321)
Q Consensus 33 v~v~TwNv~~~~~-~~~l~~~l~~~~~~Di~viglQE~~~~~~--~~~l~~~l~~~y~~v~~~~l~gi~l~vf~~~~~~~ 109 (321)
+.|+||||+|... ...+..|+. ...||| |||||...... ...+.... .|..+....-+.-+.+|++|+....
T Consensus 1 mri~t~Ni~g~~~~~~~~~~~l~-~~~~DI--i~LQE~~~~~~~~~~~~~~~~--g~~~~~~~~~g~~Gvailsr~~~~~ 75 (254)
T TIGR00195 1 MKIISWNVNGLRARLHKGLAWLK-ENQPDV--LCLQETKVQDEQFPLEPFHKE--GYHVFFSGQKGYSGVAIFSKEEPLS 75 (254)
T ss_pred CEEEEEEcCcHHHhHHHHHHHHH-hcCCCE--EEEEecccchhhCCHHHhhcC--CcEEEEecCCCcceEEEEEcCCcce
Confidence 3689999998643 234667774 678999 77999864321 11111212 3433323223334567778853221
Q ss_pred cccceeeeeEeecCcccc-ccccCceEEEEEEEcCeEEEEEeecCCCCCc----cHHHHHHHHHHHHHhccCCCCCCCCC
Q 038755 110 LVKELKLDKYSVGGFGGF-IGRKKGAVAIRINYKGITMVFISCHLSAHAR----NVEERNSECRHILHSLFSKNQNPYAE 184 (321)
Q Consensus 110 ~i~~~~~~~~~~gg~gg~-~g~nKGaV~v~~~i~~~~i~fin~HL~a~~~----~~~~R~~~~~~I~~~lf~~~~~~~~~ 184 (321)
+. . +++.. .. ..|.+ +...+. .+.++|+|++++.. ....|.+.+..+.+.+.... .
T Consensus 76 ------~~---~-~~~~~~~~-~~~r~-i~~~~~--~~~l~~~~~p~~~~~~~~~~~~r~~~~~~l~~~~~~~~-----~ 136 (254)
T TIGR00195 76 ------VR---R-GFGVEEED-AEGRI-IMAEFD--SFLVINGYFPNGSRDDSEKLPYKLQWLEALQNYLEKLV-----D 136 (254)
T ss_pred ------EE---E-CCCCcccc-cCCCE-EEEEEC--CEEEEEEEccCCCCCCCccHHHHHHHHHHHHHHHHHHH-----h
Confidence 11 0 11100 11 23433 233443 47899999987432 34456666666555432110 1
Q ss_pred CcceEEEeccccccccC
Q 038755 185 PAQITVWLGDLNYRIQG 201 (321)
Q Consensus 185 ~~d~vf~~GDlNyRi~~ 201 (321)
....+|++||||-..+.
T Consensus 137 ~~~pvIi~GDfN~~~~~ 153 (254)
T TIGR00195 137 KDKPVLICGDMNIAPTE 153 (254)
T ss_pred cCCcEEEEeecccCCCh
Confidence 12359999999965544
No 17
>PRK13911 exodeoxyribonuclease III; Provisional
Probab=99.19 E-value=1e-09 Score=100.78 Aligned_cols=141 Identities=16% Similarity=0.188 Sum_probs=78.0
Q ss_pred EEEEEEecCCCCCcc--cHHHHhccCCCCceEEEeecCccchhHHHHHHHHcCCCcEEEEE--eeeeeEEEEEEecCCCc
Q 038755 33 ICVVTWNMNGQVSYE--DLVELIGSNRKFDLLIVGLQEVPRNNIARLLKRAVAETHDLFAK--AIMQSLQLFVFGPRNSE 108 (321)
Q Consensus 33 v~v~TwNv~~~~~~~--~l~~~l~~~~~~Di~viglQE~~~~~~~~~l~~~l~~~y~~v~~--~~l~gi~l~vf~~~~~~ 108 (321)
+.|+||||||..... .+.+||. ...||| +||||.-..... +... ...|..... .+-+--+.++++|....
T Consensus 1 mki~swNVNgir~~~~~~~~~~l~-~~~~DI--iclQEtK~~~~~-~~~~--~~gY~~~~~~~~~kgy~GVAi~~k~~~~ 74 (250)
T PRK13911 1 MKLISWNVNGLRACMTKGFMDFFN-SVDADV--FCIQESKMQQEQ-NTFE--FKGYFDFWNCAIKKGYSGVVTFTKKEPL 74 (250)
T ss_pred CEEEEEEeCChhHhhhhhHHHHHH-hcCCCE--EEEEeecccccc-cccc--cCCceEEEEecccCccceEEEEEcCCch
Confidence 358999999976532 4788994 789999 889998654322 1111 134543321 12233466677786422
Q ss_pred ccccceeeeeEeecCccccccccCceEEEEEEEcCeEEEEEeecCCCCCcc---HHHHH---HHHHHHHHhccCCCCCCC
Q 038755 109 PLVKELKLDKYSVGGFGGFIGRKKGAVAIRINYKGITMVFISCHLSAHARN---VEERN---SECRHILHSLFSKNQNPY 182 (321)
Q Consensus 109 ~~i~~~~~~~~~~gg~gg~~g~nKGaV~v~~~i~~~~i~fin~HL~a~~~~---~~~R~---~~~~~I~~~lf~~~~~~~ 182 (321)
. +.. |++.---...|- .+...+. .+.++|+..+.+... ++.|. +++...+..+ .
T Consensus 75 ~---------v~~-~~~~~~~d~eGR-~I~~~~~--~~~l~nvY~Pn~~~~~~r~~~K~~~~~~~~~~l~~l-~------ 134 (250)
T PRK13911 75 S---------VSY-GINIEEHDKEGR-VITCEFE--SFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLKAL-E------ 134 (250)
T ss_pred h---------eEE-cCCCCcccccCC-EEEEEEC--CEEEEEEEecCCCCCCcchHHHHHHHHHHHHHHHhc-c------
Confidence 1 112 333211012343 3444454 588999999987643 22332 2333333332 1
Q ss_pred CCCcceEEEeccccccccC
Q 038755 183 AEPAQITVWLGDLNYRIQG 201 (321)
Q Consensus 183 ~~~~d~vf~~GDlNyRi~~ 201 (321)
....++|+||||-....
T Consensus 135 --~~~~~Ii~GD~Nva~~~ 151 (250)
T PRK13911 135 --LKKPVIVCGDLNVAHNE 151 (250)
T ss_pred --cCCCEEEEccccCCCCh
Confidence 12369999999955443
No 18
>PLN03144 Carbon catabolite repressor protein 4 homolog; Provisional
Probab=99.10 E-value=2.9e-09 Score=108.13 Aligned_cols=172 Identities=15% Similarity=0.146 Sum_probs=96.7
Q ss_pred ceeEEEEEEecCCCC----------Cccc---------HHHHhccCCCCceEEEeecCccchhHHHHHHHHcC-CCcEEE
Q 038755 30 DLCICVVTWNMNGQV----------SYED---------LVELIGSNRKFDLLIVGLQEVPRNNIARLLKRAVA-ETHDLF 89 (321)
Q Consensus 30 ~l~v~v~TwNv~~~~----------~~~~---------l~~~l~~~~~~Di~viglQE~~~~~~~~~l~~~l~-~~y~~v 89 (321)
.-++.|+||||=... |+.. |.+.| ....||| |||||+.......++...|. ..|.-+
T Consensus 252 ~~~frVmSYNILAd~ya~~dly~ycp~~aL~W~yRk~lIl~EI-~~~~aDI--ICLQEV~~~~~~d~~~p~L~~~GY~Gv 328 (606)
T PLN03144 252 AGTFTVLSYNILSDLYATSDMYSYCPPWALSWTYRRQNLLREI-VGYRADI--LCLQEVQSDHFEEFFAPELDKHGYQAL 328 (606)
T ss_pred CCCEEEEEeeeccccccCcccccCCCccccCHHHHHHHHHHHH-HhcCCCE--EEEeecCHHHHHHHHHhhhhhcCceEE
Confidence 557899999997432 1111 11122 3578999 99999987766666666553 356555
Q ss_pred EEeee---------eeEEEEEEecCCCcccccceeee--eEe---ecCcc----------ccccccCceEEEEEEEc---
Q 038755 90 AKAIM---------QSLQLFVFGPRNSEPLVKELKLD--KYS---VGGFG----------GFIGRKKGAVAIRINYK--- 142 (321)
Q Consensus 90 ~~~~l---------~gi~l~vf~~~~~~~~i~~~~~~--~~~---~gg~g----------g~~g~nKGaV~v~~~i~--- 142 (321)
....- .+=+.++|-|++-...+..-.+. ... +.... -++ ++.-|+.+.|...
T Consensus 329 ~~~Kt~~~~~~~~~~~DGcAIFyr~drFeLv~~~~ief~~~~lslt~~~~~s~~~~~~l~Rl~-kdNVAliv~Le~k~~~ 407 (606)
T PLN03144 329 YKKKTTEVYTGNTYVIDGCATFFRRDRFSLVKKYEVEFNKAAQSLTEALIPSAQKKAALNRLL-KDNVALIVVLEAKFGN 407 (606)
T ss_pred EeCCCCccccccccCCceeEEEEECcceEEEEeeeeeccchhhccCccccccccchhhhhhhc-cCcEEEEEEEEEeccc
Confidence 33221 13357888888765555432221 000 00000 011 1113444555442
Q ss_pred --------CeEEEEEeecCCCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcceEEEeccccccccCCCchhhHHHHhh
Q 038755 143 --------GITMVFISCHLSAHARNVEERNSECRHILHSLFSKNQNPYAEPAQITVWLGDLNYRIQGLNTHPVRNIIHK 213 (321)
Q Consensus 143 --------~~~i~fin~HL~a~~~~~~~R~~~~~~I~~~lf~~~~~~~~~~~d~vf~~GDlNyRi~~~~~~~~~~~i~~ 213 (321)
+..|+++|+||..+...-..|..|...|++.+-.-.. ...-.+|++||||.-.+ +.+-+++.+
T Consensus 408 ~~~~~~~~~~~l~VaNTHL~~~p~~~dvRl~Q~~~Ll~~l~~~~~----~~~~PvIlcGDFNS~P~----S~vy~lLt~ 478 (606)
T PLN03144 408 QGADNGGKRQLLCVANTHIHANQELKDVKLWQVHTLLKGLEKIAA----SADIPMLVCGDFNSVPG----SAPHCLLAT 478 (606)
T ss_pred ccccCCCCccEEEEEEeeeccCCccchhHHHHHHHHHHHHHHHhh----cCCCceEEeccCCCCCC----Chhhhhhhc
Confidence 2369999999977665556788888877776511000 01125999999995444 355556554
No 19
>KOG3873 consensus Sphingomyelinase family protein [Signal transduction mechanisms]
Probab=99.06 E-value=2.5e-09 Score=100.32 Aligned_cols=257 Identities=23% Similarity=0.246 Sum_probs=145.2
Q ss_pred ceeEEEEEEecCCCCC-cc-------cHHHHhccCCCCceEEEeecCccchhHHHHHHHHcCCCcE---EEEEeeeeeEE
Q 038755 30 DLCICVVTWNMNGQVS-YE-------DLVELIGSNRKFDLLIVGLQEVPRNNIARLLKRAVAETHD---LFAKAIMQSLQ 98 (321)
Q Consensus 30 ~l~v~v~TwNv~~~~~-~~-------~l~~~l~~~~~~Di~viglQE~~~~~~~~~l~~~l~~~y~---~v~~~~l~gi~ 98 (321)
.+.+.+.|.|.=|-.- .. ++.+.+ ..+.+|| ++|||+=..+=...|++.....|. .+.|.-| |-+
T Consensus 6 a~~lriltlN~Wgip~~Sk~R~~Rm~~~g~~l-~~E~yDi--v~LQEvWs~eD~~~L~~~~ss~yPysh~FHSGim-GaG 81 (422)
T KOG3873|consen 6 ALELRILTLNIWGIPYVSKDRRHRMDAIGDEL-ASEKYDI--VSLQEVWSQEDFEYLQSGCSSVYPYSHYFHSGIM-GAG 81 (422)
T ss_pred hheeeeeEeeccccccccchhHHHHHHHhHHH-hhcccch--hhHHHHHHHHHHHHHHHhccccCchHHhhhcccc-cCc
Confidence 4567888999876532 11 234444 4689999 789998433222345554543332 2344444 889
Q ss_pred EEEEecCCCcccccceeeeeEeecCccc-----c-ccccCceEEEEEEEcCeEEEEEeecCCCCCc-----cHHHHHHHH
Q 038755 99 LFVFGPRNSEPLVKELKLDKYSVGGFGG-----F-IGRKKGAVAIRINYKGITMVFISCHLSAHAR-----NVEERNSEC 167 (321)
Q Consensus 99 l~vf~~~~~~~~i~~~~~~~~~~gg~gg-----~-~g~nKGaV~v~~~i~~~~i~fin~HL~a~~~-----~~~~R~~~~ 167 (321)
|+||+|.++..-.-. .++..|... - .| -||.-...+.+++..+.+.|+||-|--. -+--|..|.
T Consensus 82 L~vfSK~PI~~t~~~----~y~lNG~p~~i~rGDWf~-GK~Vgl~~l~~~g~~v~~yntHLHAeY~rq~D~YL~HR~~QA 156 (422)
T KOG3873|consen 82 LCVFSKHPILETLFH----RYSLNGYPHAIHRGDWFG-GKGVGLTVLLVGGRMVNLYNTHLHAEYDRQNDEYLCHRVAQA 156 (422)
T ss_pred eEEeecCchhhhhhh----ccccCCccceeeeccccc-cceeEEEEEeeCCEEeeeeehhccccccccCchhhhHHHHHH
Confidence 999999987642211 122222221 1 13 3887778889999999999999987432 244587777
Q ss_pred HHHHHhccCCCCCCCCCCcceEEEeccccccccCCCchhhH--HHHhhhhHHHhhhhhHHHHHhhhcccCCccccCCccC
Q 038755 168 RHILHSLFSKNQNPYAEPAQITVWLGDLNYRIQGLNTHPVR--NIIHKDLQKLLTSKDQLLQEAERGQIFNGYCEGSLTF 245 (321)
Q Consensus 168 ~~I~~~lf~~~~~~~~~~~d~vf~~GDlNyRi~~~~~~~~~--~~i~~~~~~~l~~~DQL~~~~~~~~~f~~f~E~~I~F 245 (321)
.++.+-+-.. ....|.||.+||||-+....+.+-.. .+. +.|..+. .||.-..-.+...+++..|+.-+=
T Consensus 157 wdlaqfi~~t-----~q~~~vVI~~GDLN~~P~dl~~~ll~~a~l~--daw~~~h-~~q~e~~~~r~s~~~~l~~g~tcd 228 (422)
T KOG3873|consen 157 WDLAQFIRAT-----RQNADVVILAGDLNMQPQDLGHKLLLSAGLV--DAWTSLH-LDQCESDSFRLSEDKELVEGNTCD 228 (422)
T ss_pred HHHHHHHHHH-----hcCCcEEEEecCCCCCccccceeeeeccchh--hhHhhhc-hhhhcCcccccchhhhhhcCCccc
Confidence 7776554221 23568999999999888775442221 111 2333332 344432222223344445554111
Q ss_pred --CCCccccCCCCCCCCCCCCCCcccccceeeecCCCccccceeeeeee------ccCCCccCCcceEeEEEEEe
Q 038755 246 --KPTYKYNIGSSDYDTSYKVRVPSWTDRILFKIDDPDKINAALHSYES------IDDIYSSDHKPVKAHLCLTV 312 (321)
Q Consensus 246 --~PTYK~~~~s~~ydts~k~R~PsWcDRIL~~~~~~~~~~~~~~~Y~s------~~~~~~SDHkPV~a~f~l~~ 312 (321)
.=||.- ...+-|.---+| .|.||+++.. ..+++..+.- ..+...|||..+.|++.+.-
T Consensus 229 ~~~N~y~~--aqk~~ddp~~~R----iDYvl~k~~~---~~~~~a~~~~t~~rvP~~d~s~SDH~Al~a~L~I~~ 294 (422)
T KOG3873|consen 229 SPLNCYTS--AQKREDDPLGKR----IDYVLVKPGD---CNAKIAEVEFTEPRVPGEDCSYSDHEALMATLKIFK 294 (422)
T ss_pred CcchhhhH--HHhCCCCcccee----eeEEEEcCcc---eEEEeeeEEecCCCCCCCCCCccchhhheeEEEeec
Confidence 112211 011111101257 8999998775 3333333331 34678899999999887644
No 20
>smart00476 DNaseIc deoxyribonuclease I. Deoxyribonuclease I catalyzes the endonucleolytic cleavage of double-stranded DNA. The enzyme is secreted outside the cell and also involved in apoptosis in the nucleus.
Probab=99.01 E-value=1.9e-08 Score=93.50 Aligned_cols=152 Identities=11% Similarity=0.205 Sum_probs=83.9
Q ss_pred eEEEEEEecCCCCCcc----c----HHHHhccCCCCceEEEeecCccchhH---HHHH---HHHcCCCcEEEEEeeee--
Q 038755 32 CICVVTWNMNGQVSYE----D----LVELIGSNRKFDLLIVGLQEVPRNNI---ARLL---KRAVAETHDLFAKAIMQ-- 95 (321)
Q Consensus 32 ~v~v~TwNv~~~~~~~----~----l~~~l~~~~~~Di~viglQE~~~~~~---~~~l---~~~l~~~y~~v~~~~l~-- 95 (321)
.+.|+|||+-...+.+ . +.+.+. .||| ||+||+..... ..++ .+..+..|..+.+..++
T Consensus 17 ~l~I~SfNIr~fgd~k~~~~~r~~~i~~il~---~~DI--iglQEV~d~q~~~l~~ll~~Ln~~~~~~Y~~v~s~r~gr~ 91 (276)
T smart00476 17 SLRICAFNIQSFGDSKMSNATLMSIIVKILS---RYDI--ALVQEVRDSDLSAVPKLMDQLNSDSPNTYSYVSSEPLGRN 91 (276)
T ss_pred cEEEEEEECcccCCccccHHHHHHHHHHHhc---cCCE--EEEEEeecchhHHHHHHHHHHhhcCCCCceEEecCCCCCC
Confidence 4789999998543321 1 234442 7899 89999965432 2333 22233579888766543
Q ss_pred --eEEEEEEecCCCcccccceeeeeEeecCccccccccCceEEEEEEEcCe---EEEEEeecCCCCCccHHHHHHHHHHH
Q 038755 96 --SLQLFVFGPRNSEPLVKELKLDKYSVGGFGGFIGRKKGAVAIRINYKGI---TMVFISCHLSAHARNVEERNSECRHI 170 (321)
Q Consensus 96 --gi~l~vf~~~~~~~~i~~~~~~~~~~gg~gg~~g~nKGaV~v~~~i~~~---~i~fin~HL~a~~~~~~~R~~~~~~I 170 (321)
+-+..+|-|++....+.....+.... +-.... .+=...++|+...+ .|.++|+|+.+.. ..++.+.+...
T Consensus 92 ~~~E~~a~~Yr~drv~v~~~~~f~d~~~-~~~~~F--~ReP~~~~F~~~~~~~~~F~li~~H~~p~~--~~~e~~aL~~v 166 (276)
T smart00476 92 SYKEQYLFLYRSDLVSVLDSYLYDDGCE-CGNDVF--SREPFVVKFSSPSTAVKEFVIVPLHTTPEA--AVAEIDALYDV 166 (276)
T ss_pred CCCEEEEEEEecceEEEcccceecCCCC-Cccccc--cccceEEEEEeCCCCCccEEEEEecCChHH--HHHHHHHHHHH
Confidence 45666777776554443322211000 001111 24455678887664 7999999999752 22344442222
Q ss_pred HHhccCCCCCCCCCCcceEEEeccccccc
Q 038755 171 LHSLFSKNQNPYAEPAQITVWLGDLNYRI 199 (321)
Q Consensus 171 ~~~lf~~~~~~~~~~~d~vf~~GDlNyRi 199 (321)
.....++. ..+.+|++||||--.
T Consensus 167 ~~~~~~~~------~~~~villGDFNa~~ 189 (276)
T smart00476 167 YLDVRQKW------GTEDVIFMGDFNAGC 189 (276)
T ss_pred HHHHHHhh------ccCCEEEEccCCCCC
Confidence 22211111 224599999999643
No 21
>PRK15251 cytolethal distending toxin subunit CdtB; Provisional
Probab=99.00 E-value=6.9e-09 Score=95.49 Aligned_cols=143 Identities=18% Similarity=0.249 Sum_probs=81.6
Q ss_pred EEEEEEecCCCCCc-c-----cHHHHhccCCCCceEEEeecCccchhHH-----HHHHHH---cC---------------
Q 038755 33 ICVVTWNMNGQVSY-E-----DLVELIGSNRKFDLLIVGLQEVPRNNIA-----RLLKRA---VA--------------- 83 (321)
Q Consensus 33 v~v~TwNv~~~~~~-~-----~l~~~l~~~~~~Di~viglQE~~~~~~~-----~~l~~~---l~--------------- 83 (321)
..++|||+.|..-. | ++.+++..+...|| +.+||+...... ..++.. .+
T Consensus 25 ~~~~twn~qg~s~~~~~kw~~~v~~l~~~~~~~DI--la~QEags~p~~a~~~~~~~~~~g~~~~v~ey~w~l~~~srpg 102 (271)
T PRK15251 25 YKVATWNLQGSSASTESKWNVNVRQLLSGENPADI--LMVQEAGSLPSSAVPTGRHVQPGGVGIPIDEYTWNLGTRSRPN 102 (271)
T ss_pred ceEEEeecCCCCCCChhhhhhhHHHHhcCCCCCCE--EEEEecCCCccccccccccccccccccCcccEEEEccCccCCC
Confidence 46899999987432 1 35677754567999 669999754332 111110 01
Q ss_pred CCcEEEEEee--eeeEEEEEEecCCCcccccceeeeeEeecCccccccccCceEEEEEEEcCeEEEEEeecCCCCCccHH
Q 038755 84 ETHDLFAKAI--MQSLQLFVFGPRNSEPLVKELKLDKYSVGGFGGFIGRKKGAVAIRINYKGITMVFISCHLSAHARNVE 161 (321)
Q Consensus 84 ~~y~~v~~~~--l~gi~l~vf~~~~~~~~i~~~~~~~~~~gg~gg~~g~nKGaV~v~~~i~~~~i~fin~HL~a~~~~~~ 161 (321)
..|....... -+-+++.|.+|.... ++.+ +. ..+ +..+..+++++ ++ +.|.+.|+.+..++
T Consensus 103 m~YiY~~aiD~~ggr~glAIlSr~~a~----~~~~--l~---~p~--~~~Rpilgi~i--~~--~~ffstH~~a~~~~-- 165 (271)
T PRK15251 103 QVYIYYSRVDVGANRVNLAIVSRRRAD----EVIV--LR---PPT--VASRPIIGIRI--GN--DVFFSIHALANGGT-- 165 (271)
T ss_pred ceEEEEecccCCCCceeEEEEeccccc----ceEE--ec---CCC--CcccceEEEEe--cC--eEEEEeeecCCCCc--
Confidence 1232222222 234677777776532 1211 11 111 22578888876 33 78999999998433
Q ss_pred HHHHHHHHHHHhccCCCCCCCCCCcceEEEecccccccc
Q 038755 162 ERNSECRHILHSLFSKNQNPYAEPAQITVWLGDLNYRIQ 200 (321)
Q Consensus 162 ~R~~~~~~I~~~lf~~~~~~~~~~~d~vf~~GDlNyRi~ 200 (321)
+|..+++.|....... ..+...+++||||-..+
T Consensus 166 da~aiV~~I~~~f~~~------~~~~pw~I~GDFNr~P~ 198 (271)
T PRK15251 166 DAGAIVRAVHNFFRPN------MRHINWMIAGDFNRSPD 198 (271)
T ss_pred cHHHHHHHHHHHHhhc------cCCCCEEEeccCCCCCc
Confidence 4777777776653201 12346999999994333
No 22
>COG0708 XthA Exonuclease III [DNA replication, recombination, and repair]
Probab=98.87 E-value=2.8e-09 Score=97.53 Aligned_cols=142 Identities=18% Similarity=0.311 Sum_probs=79.3
Q ss_pred EEEEEecCCCCCc-ccHHHHhccCCCCceEEEeecCccchhH--HHHHHHHcCCCc-EEEEEeeeeeEEEEEEecCCCcc
Q 038755 34 CVVTWNMNGQVSY-EDLVELIGSNRKFDLLIVGLQEVPRNNI--ARLLKRAVAETH-DLFAKAIMQSLQLFVFGPRNSEP 109 (321)
Q Consensus 34 ~v~TwNv~~~~~~-~~l~~~l~~~~~~Di~viglQE~~~~~~--~~~l~~~l~~~y-~~v~~~~l~gi~l~vf~~~~~~~ 109 (321)
.+.||||||.... +.+.+||. +..||| |||||+-...- -....+.+| | ......+-+--+..+++|....
T Consensus 2 kI~SwNVNgiRar~~~~~~~l~-~~~pDV--lclQEtK~~~~~fp~~~~~~~G--Y~~~~~~gqKgysGVailsr~~~~- 75 (261)
T COG0708 2 KIASWNVNGLRARLKKLLDWLE-EEQPDV--LCLQETKAQDEQFPREELEALG--YHHVFNHGQKGYSGVAILSKKPPD- 75 (261)
T ss_pred eeEEEehhhHHHHHHHHHHHHH-HhCCCE--EEEEecccCcccCCHhHHhhCC--ceEEEecCcCCcceEEEEEccCch-
Confidence 5899999997653 34778885 567899 88999864331 112222333 4 4444444444456677776543
Q ss_pred cccceeeeeEeecCccccc-cccCceEEEEEEEcCeEEEEEeecCCCCCc-c---HHHHH---HHHHHHHHhccCCCCCC
Q 038755 110 LVKELKLDKYSVGGFGGFI-GRKKGAVAIRINYKGITMVFISCHLSAHAR-N---VEERN---SECRHILHSLFSKNQNP 181 (321)
Q Consensus 110 ~i~~~~~~~~~~gg~gg~~-g~nKGaV~v~~~i~~~~i~fin~HL~a~~~-~---~~~R~---~~~~~I~~~lf~~~~~~ 181 (321)
+ +.. |+++.. -..-|- .|...+.+ +.++|..++.++. . ..-|. +.+..-++.+..
T Consensus 76 ---~-----v~~-g~~~~~~~d~e~R-~I~a~~~~--~~v~~~Y~PnG~~~~~~k~~yKl~f~~~l~~~l~~l~~----- 138 (261)
T COG0708 76 ---D-----VRR-GFPGEEEDDEEGR-VIEAEFDG--FRVINLYFPNGSSIGLEKFDYKLRFLDALRNYLEELLK----- 138 (261)
T ss_pred ---h-----hhc-CCCCCccccccCc-EEEEEECC--EEEEEEEcCCCCCCCCcchHHHHHHHHHHHHHHHHHhh-----
Confidence 1 222 565521 001232 35666666 8899999999886 2 22222 222222222211
Q ss_pred CCCCcceEEEeccccccccC
Q 038755 182 YAEPAQITVWLGDLNYRIQG 201 (321)
Q Consensus 182 ~~~~~d~vf~~GDlNyRi~~ 201 (321)
....++++||||-.-+.
T Consensus 139 ---~~~~~vl~GD~NIap~~ 155 (261)
T COG0708 139 ---KGKPVVLCGDFNIAPEE 155 (261)
T ss_pred ---cCCCEEEecccccCCch
Confidence 12459999999954443
No 23
>KOG2338 consensus Transcriptional effector CCR4-related protein [Transcription]
Probab=98.25 E-value=4.1e-06 Score=82.12 Aligned_cols=163 Identities=16% Similarity=0.180 Sum_probs=96.8
Q ss_pred eeEEEEEEecCCCCCc-----------ccHHHHhc---------cCCCCceEEEeecCccchhHHHHHHHHcC-CCcEEE
Q 038755 31 LCICVVTWNMNGQVSY-----------EDLVELIG---------SNRKFDLLIVGLQEVPRNNIARLLKRAVA-ETHDLF 89 (321)
Q Consensus 31 l~v~v~TwNv~~~~~~-----------~~l~~~l~---------~~~~~Di~viglQE~~~~~~~~~l~~~l~-~~y~~v 89 (321)
+++.|+|||+=.+.-- .+.-.|.. ..-.||| +||||+.......+++..++ -+|..+
T Consensus 115 f~ftvmSYNILAQ~l~~~~~r~~~~~s~~~L~W~~R~~~Ll~EL~~~dpDI--lCLQEVq~d~~~~~~~~~~~~lGy~~~ 192 (495)
T KOG2338|consen 115 FDFTVMSYNILAQDLLRDIRRLYFPESGPALKWLRRSQNLLNELKHYDPDV--LCLQEVQEDHYPEFWQPLLGKLGYTGF 192 (495)
T ss_pred cceEEEEehHhHHHHHHHhHHhhccCChhhcchhHHhHHHHHHHhhcCCCe--eeehhhhhhhhHHHHHHHHhhcCceEE
Confidence 6899999999765421 12222321 3457999 89999987766555555443 345544
Q ss_pred EEeee--eeEEEEEEecCCCcccccceeeeeEeecCcccccc-cc-CceEEEEEEEcCe---EEEEEeecCCCCCccHHH
Q 038755 90 AKAIM--QSLQLFVFGPRNSEPLVKELKLDKYSVGGFGGFIG-RK-KGAVAIRINYKGI---TMVFISCHLSAHARNVEE 162 (321)
Q Consensus 90 ~~~~l--~gi~l~vf~~~~~~~~i~~~~~~~~~~gg~gg~~g-~n-KGaV~v~~~i~~~---~i~fin~HL~a~~~~~~~ 162 (321)
..... -+=+++++-+....+.+.+-.+...-. + .+++- .| ++.|..+|++-+. -++..|+||--|......
T Consensus 193 ~~r~t~~KthG~ai~w~~~~F~lv~~~~l~y~~~-~-~~l~n~~NV~lvv~l~f~~~~~~sq~ilVanTHLl~np~~~~v 270 (495)
T KOG2338|consen 193 FKRRTGTKTHGVAILWHSAKFKLVNHSELNYFDS-G-SALANRDNVGLVVSLEFRLVDESSQGILVANTHLLFNPSRSDV 270 (495)
T ss_pred EEeccCCCCceEEEEEecccceecccchhhcccc-c-chhhcccceeEEEEEEecccCcccCceEEEeeeeeecCcccch
Confidence 33332 123455666665544444433332211 1 12221 12 3344455544444 899999999998877788
Q ss_pred HHHHHHHHHHhc--cCCCCCCCCCCcceEEEeccccccccC
Q 038755 163 RNSECRHILHSL--FSKNQNPYAEPAQITVWLGDLNYRIQG 201 (321)
Q Consensus 163 R~~~~~~I~~~l--f~~~~~~~~~~~d~vf~~GDlNyRi~~ 201 (321)
|..|...|+..+ +... ...|-++|+|||||---+.
T Consensus 271 rL~Q~~iiL~~~~~~~~~----~~~~~pi~l~GDfNt~p~~ 307 (495)
T KOG2338|consen 271 RLAQVYIILAELEKMSKS----SKSHWPIFLCGDFNTEPDS 307 (495)
T ss_pred hhHHHHHHHHHHHHHHhh----cccCCCeEEecCCCCCCCC
Confidence 999998888875 3221 1134479999999965554
No 24
>COG3021 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.55 E-value=0.00077 Score=63.20 Aligned_cols=143 Identities=14% Similarity=0.127 Sum_probs=77.5
Q ss_pred CceeEEEEEEecCCC-CCcccHHHHhccCCCCceEEEeecCccchhHHHH--HHHHcCCCcEEEEEeeeeeEEEEEEecC
Q 038755 29 SDLCICVVTWNMNGQ-VSYEDLVELIGSNRKFDLLIVGLQEVPRNNIARL--LKRAVAETHDLFAKAIMQSLQLFVFGPR 105 (321)
Q Consensus 29 ~~l~v~v~TwNv~~~-~~~~~l~~~l~~~~~~Di~viglQE~~~~~~~~~--l~~~l~~~y~~v~~~~l~gi~l~vf~~~ 105 (321)
.+.-+++++.|+-.. .+...+-.++. ...+|++. +||......... +.+.. .|.....+.-+.+.+.++.++
T Consensus 85 ~~~~~~~l~~N~r~~n~~~~k~Lsl~~-~~~~D~v~--~~E~~~~~~~~~~~l~~~y--P~~~~~~~~~~~~~~a~~sr~ 159 (309)
T COG3021 85 DQRLLWNLQKNVRFDNASVAKLLSLIQ-QLDADAVT--TPEGVQLWTAKVGALAAQY--PAFILCQHPTGVFTLAILSRR 159 (309)
T ss_pred cchhhhhhhhhccccCcCHHHHHHHHh-hhCcchhh--hHHHHHHhHhHHHHHHHhC--CceeecCCCCCeeeeeecccc
Confidence 355678888886433 23333333443 33488844 888765433322 22222 233333333355666677765
Q ss_pred CCcccccceeeeeEeecCccccccccCceEEEEEE-EcCeEEEEEeecCCCCC-ccHHHHHHHHHHHHHhccCCCCCCCC
Q 038755 106 NSEPLVKELKLDKYSVGGFGGFIGRKKGAVAIRIN-YKGITMVFISCHLSAHA-RNVEERNSECRHILHSLFSKNQNPYA 183 (321)
Q Consensus 106 ~~~~~i~~~~~~~~~~gg~gg~~g~nKGaV~v~~~-i~~~~i~fin~HL~a~~-~~~~~R~~~~~~I~~~lf~~~~~~~~ 183 (321)
.-. ...+.... +- + -||+.++... .+++.+..++.|..-.. ..-.+| +|+.++.+.+..-.
T Consensus 160 ~~~---~~~~~e~~----~~---~-pk~~~~t~~~~~~g~~l~v~~lh~~~~~~~~~~~~-~ql~~l~~~i~~~~----- 222 (309)
T COG3021 160 PCC---PLTEAEPW----LR---L-PKSALATAYPLPDGTELTVVALHAVNFPVGTDPQR-AQLLELGDQIAGHS----- 222 (309)
T ss_pred ccc---cccccCcc----cc---C-CccceeEEEEcCCCCEEEEEeeccccccCCccHHH-HHHHHHHHHHHcCC-----
Confidence 421 11111111 10 2 3676665554 46789999999988332 223455 77777777753221
Q ss_pred CCcceEEEecccc
Q 038755 184 EPAQITVWLGDLN 196 (321)
Q Consensus 184 ~~~d~vf~~GDlN 196 (321)
..+|+.||||
T Consensus 223 ---gpvIlaGDfN 232 (309)
T COG3021 223 ---GPVILAGDFN 232 (309)
T ss_pred ---CCeEEeecCC
Confidence 2499999999
No 25
>PF14529 Exo_endo_phos_2: Endonuclease-reverse transcriptase ; PDB: 2EI9_A 1WDU_B.
Probab=96.33 E-value=0.016 Score=45.98 Aligned_cols=34 Identities=26% Similarity=0.129 Sum_probs=17.0
Q ss_pred cccccceeeecCCCccccceeeeeeeccCCCccCCcceE
Q 038755 267 PSWTDRILFKIDDPDKINAALHSYESIDDIYSSDHKPVK 305 (321)
Q Consensus 267 PsWcDRIL~~~~~~~~~~~~~~~Y~s~~~~~~SDHkPV~ 305 (321)
.+--|+||....... . ..-........|||+||.
T Consensus 86 ~s~iD~~~~s~~~~~----~-~~~~~~~~~~~SDH~~I~ 119 (119)
T PF14529_consen 86 GSRIDLILTSDNLLS----W-CVWVISSDDSGSDHCPIT 119 (119)
T ss_dssp EE--EEEEEECCGCC----C-EEEEEETTSSSSSB--EE
T ss_pred CceEEEEEECChHHh----c-CcEEEeCCCCCCCccCCC
Confidence 344999998655321 1 011122356789999995
No 26
>COG5239 CCR4 mRNA deadenylase, exonuclease subunit and related nucleases [RNA processing and modification]
Probab=92.91 E-value=0.29 Score=46.85 Aligned_cols=134 Identities=19% Similarity=0.220 Sum_probs=73.0
Q ss_pred eEEEEEEecCCCC-------Ccc-cHHHH------hc---cCCCCceEEEeecCccchhHHHHHHHHcC-CCcEEEEEee
Q 038755 32 CICVVTWNMNGQV-------SYE-DLVEL------IG---SNRKFDLLIVGLQEVPRNNIARLLKRAVA-ETHDLFAKAI 93 (321)
Q Consensus 32 ~v~v~TwNv~~~~-------~~~-~l~~~------l~---~~~~~Di~viglQE~~~~~~~~~l~~~l~-~~y~~v~~~~ 93 (321)
++.|+||||=.+. |.. .-.+| |- ..-++|| +||||+.......++.+.++ ..|-.
T Consensus 30 ~ftimTYN~Laq~y~~r~~y~~s~~aL~W~~R~~~L~~EL~~Yn~Di--~CLQEvd~~~~~~fw~~~l~~~gY~~----- 102 (378)
T COG5239 30 DFTIMTYNVLAQTYATRKMYPYSGWALKWSYRSRLLLQELLYYNADI--LCLQEVDAEDFEDFWKDQLGKLGYDG----- 102 (378)
T ss_pred eeEEEehhhhhhhhccccccCCchhhhhhHHHHHHHHHHHhccCCce--eeeehhhhhHHHHHHHHHhcccccce-----
Confidence 7999999997542 111 11112 11 2468999 88999998888888888775 23432
Q ss_pred eeeEEEEEEecCCC-cccccceeeeeEeecCccccccccCceEEEEEEEc-C-e--EEEEEeecCCCCCccHHHHHHHHH
Q 038755 94 MQSLQLFVFGPRNS-EPLVKELKLDKYSVGGFGGFIGRKKGAVAIRINYK-G-I--TMVFISCHLSAHARNVEERNSECR 168 (321)
Q Consensus 94 l~gi~l~vf~~~~~-~~~i~~~~~~~~~~gg~gg~~g~nKGaV~v~~~i~-~-~--~i~fin~HL~a~~~~~~~R~~~~~ 168 (321)
+|.++.- .....+.+ ++ ++- |++|.++.. + . .+...+.|+-.|.--..+|.++-.
T Consensus 103 -------if~~k~~k~~~m~~~d-----~t-------~~d-Gc~if~k~~~~~sk~~li~~~~~~f~~p~~~~er~r~t~ 162 (378)
T COG5239 103 -------IFIPKERKVKWMIDYD-----TT-------KVD-GCAIFLKRFIDSSKLGLILAVTHLFWHPYGYYERFRQTY 162 (378)
T ss_pred -------EEecCCCccccccccc-----cc-------ccc-eEEEEEEeccccchhhhhhhhhHhhcccceeehhhhHHH
Confidence 3333332 11111111 11 122 345666652 1 1 244556777766554556776666
Q ss_pred HHHHhccCCCCCCCCCCcceEEEeccccc
Q 038755 169 HILHSLFSKNQNPYAEPAQITVWLGDLNY 197 (321)
Q Consensus 169 ~I~~~lf~~~~~~~~~~~d~vf~~GDlNy 197 (321)
.++..+-... .-+-+++++||+|-
T Consensus 163 ~~lnri~e~~-----~~~w~~l~~~l~n~ 186 (378)
T COG5239 163 ILLNRIGEKD-----NIAWVCLFVGLFNK 186 (378)
T ss_pred HHHHHHhhhh-----hcchhheeeeeccC
Confidence 5555541110 01135689999993
No 27
>PF03494 Beta-APP: Beta-amyloid peptide (beta-APP); InterPro: IPR013803 Amyloid-beta precursor protein (APP, or A4) is associated with Alzheimer's disease (AD), because one of its breakdown products, amyloid-beta (A-beta), aggregates to form amyloid or senile plaques [, ]. Mutations in APP or in proteins that process APP have been linked with early-onset, familial AD. Individuals with Down's syndrome carry an extra copy of chromosome 21, which contains the APP gene, and almost invariably develop amyloid plaques and Alzheimer's symptoms. APP is important for the neurogenesis and neuronal regeneration, either through the intact protein, or through its many breakdown products []. APP consists of a large N-terminal extracellular region containing heparin-binding and copper-binding sites, a short hydrophobic transmembrane domain, and a short C-terminal intracellular domain. The N-terminal region is similar in structure to cysteine-rich growth factors and appears to function as a cell surface receptor, contributing to neurite growth, neuronal adhesion, axonogenesis and cell mobility []. APP acts as a kinesin I membrane receptor to mediate the axonal transport of beta-secretase and presenilin 1. The N-terminal domain can regulate neurite outgrowth through its binding to heparin and collagen I and IV, which are components of the extracellular matrix. APP is also coupled to apoptosis-inducing pathways, and is involved in copper homeostasis/oxidative stress through copper ion reduction, where copper-metallated APP induces neuronal death []. The C-terminal intracellular domain appears to be involved in transcription regulation through protein-protein interactions. APP can promote transcription activation through binding to APBB1/Tip60, and may bind to the adaptor protein FE65 to transactivate a wide variety of different promoters. APP can be processed by different sets of enzymes: In the non-amyloidogenic (non-plaque-forming) pathway, APP is cleaved by alpha-secretase to yield a soluble N-terminal sAPP-alpha (neuroprotective) and a membrane-bound CTF-alpha. CTF-alpha is broken-down by presenilin-containing gamma-secretase to yield soluble p3 and membrane-bound AICD (nuclear signalling). In the amyloidogenic pathway (plaque-forming), APP is broken down by beta-secretase to yield soluble sAPP-beta and membrane-bound CTF-beta. CTF-beta is broken down by gamma-secretase to yield soluble amyloid-beta and membrane-bound AICD. Amyloid-beta is required for neuronal function, but can aggregate to form amyloid plaques that seem to disrupt brain cells by clogging points of cell-cell contact. This entry represents the amyloid-beta peptide (A-beta), which originates as a breakdown product from the cleavage of amyloid-beta precursor protein (APP, or A4), an integral, glycosylated membrane brain protein. More information about these protein can be found at Protein of the Month: Amyloid-beta Precursor Protein [].; GO: 0005488 binding, 0016021 integral to membrane; PDB: 2LMQ_F 3JTI_B 2LMO_B 3MOQ_D 2LNQ_E 2LMP_G 2BEG_B 1AMC_A 3OW9_B 3U0T_F ....
Probab=44.40 E-value=33 Score=21.69 Aligned_cols=17 Identities=35% Similarity=0.720 Sum_probs=11.2
Q ss_pred ccccCceEEEEEEEcCeE
Q 038755 128 IGRKKGAVAIRINYKGIT 145 (321)
Q Consensus 128 ~g~nKGaV~v~~~i~~~~ 145 (321)
+|.||||+ |-+.+++..
T Consensus 21 vgSNKGAI-IGLMvGgvv 37 (39)
T PF03494_consen 21 VGSNKGAI-IGLMVGGVV 37 (39)
T ss_dssp CSSSSSEE-EEEEEESEE
T ss_pred cCCCCceE-EEEEeeeEE
Confidence 45689996 566666644
No 28
>KOG3870 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.38 E-value=12 Score=36.68 Aligned_cols=18 Identities=33% Similarity=0.678 Sum_probs=14.8
Q ss_pred CCcceEEEeccccccccC
Q 038755 184 EPAQITVWLGDLNYRIQG 201 (321)
Q Consensus 184 ~~~d~vf~~GDlNyRi~~ 201 (321)
..++.|||=||||||==.
T Consensus 350 ~~S~LvIFKGDLNYRKL~ 367 (434)
T KOG3870|consen 350 QKSSLVIFKGDLNYRKLT 367 (434)
T ss_pred hhCcEEEEeccccHHHHh
Confidence 467889999999999543
No 29
>PF15130 DUF4566: Domain of unknown function (DUF4566)
Probab=41.31 E-value=14 Score=32.63 Aligned_cols=42 Identities=17% Similarity=0.192 Sum_probs=34.4
Q ss_pred ccceeeecCCCccccceeeeeeeccCCCccCCcceEeEEEEEec
Q 038755 270 TDRILFKIDDPDKINAALHSYESIDDIYSSDHKPVKAHLCLTVN 313 (321)
Q Consensus 270 cDRIL~~~~~~~~~~~~~~~Y~s~~~~~~SDHkPV~a~f~l~~~ 313 (321)
+|-|||-.++-+. +.|+.|....+-..++.|||-+.|++.-.
T Consensus 120 ~D~~lwp~nDI~k--i~ClLfSRWKgd~D~pyr~vq~kFeFhh~ 161 (241)
T PF15130_consen 120 MDFILWPRNDIEK--IVCLLFSRWKGDKDEPYRPVQQKFEFHHG 161 (241)
T ss_pred cceeeccccchhh--hhheeeecccCCCCCCcchhhhheeeccc
Confidence 8999996665443 47899999888899999999999987543
No 30
>KOG0620 consensus Glucose-repressible alcohol dehydrogenase transcriptional effector CCR4 and related proteins [Transcription]
Probab=39.53 E-value=65 Score=31.33 Aligned_cols=18 Identities=28% Similarity=0.313 Sum_probs=14.6
Q ss_pred CCCccCCcceEeEEEEEe
Q 038755 295 DIYSSDHKPVKAHLCLTV 312 (321)
Q Consensus 295 ~~~~SDHkPV~a~f~l~~ 312 (321)
....|||-|..|.|.+.-
T Consensus 336 ~~~pSDHi~L~~ef~~~~ 353 (361)
T KOG0620|consen 336 PHHPSDHIPLLAEFEIAP 353 (361)
T ss_pred CCCCCccchhhccccccC
Confidence 356899999999998743
No 31
>PRK10947 global DNA-binding transcriptional dual regulator H-NS; Provisional
Probab=29.99 E-value=36 Score=28.34 Aligned_cols=27 Identities=15% Similarity=0.170 Sum_probs=16.3
Q ss_pred CCCCccc-cCCCCCCCCCCCCCCccccc
Q 038755 245 FKPTYKY-NIGSSDYDTSYKVRVPSWTD 271 (321)
Q Consensus 245 F~PTYK~-~~~s~~ydts~k~R~PsWcD 271 (321)
=||-||| +.+...=-.+..-|.|.|.-
T Consensus 93 ~paKYky~dp~G~~~TWTGrGR~P~wi~ 120 (135)
T PRK10947 93 RPAKYSYVDENGETKTWTGQGRTPAVIK 120 (135)
T ss_pred CCCCCcccCCCCCcCcccCCCCCCHHHH
Confidence 4788998 43221111245679999973
No 32
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=29.61 E-value=41 Score=26.68 Aligned_cols=33 Identities=27% Similarity=0.550 Sum_probs=22.8
Q ss_pred EEEEecCCCCC--cccHHHHhccCCCCceEEEeecC
Q 038755 35 VVTWNMNGQVS--YEDLVELIGSNRKFDLLIVGLQE 68 (321)
Q Consensus 35 v~TwNv~~~~~--~~~l~~~l~~~~~~Di~viglQE 68 (321)
+..|++....+ .+++..++... +||+++||.=+
T Consensus 28 ~~~w~~~~~~~l~~~~l~~~~~~~-~peiliiGTG~ 62 (109)
T cd00248 28 VVPWDGTSLSDLDPEALLPLLAED-RPDILLIGTGA 62 (109)
T ss_pred eeecCCcCcccCCHHHHHHHHhhC-CCCEEEEcCCC
Confidence 57899876432 34666666533 69999999754
No 33
>PF10515 APP_amyloid: beta-amyloid precursor protein C-terminus; InterPro: IPR019543 This is the amyloid, C-terminal, protein of the beta-Amyloid precursor protein (APP) which is a conserved and ubiquitous transmembrane glycoprotein strongly implicated in the pathogenesis of Alzheimer's disease but whose normal biological function is unknown. The C-terminal 100 residues are released and aggregate into amyloid deposits which are strongly implicated in the pathology of Alzheimer's disease plaque-formation. The domain is associated with IPR008154 from INTERPRO, further towards the N terminus. ; PDB: 2ROZ_A 3DXD_D 1X11_D 2LP1_A 2LOH_A 3MXC_L 3MXY_L 3DXC_B 3DXE_D 3L81_B ....
Probab=26.40 E-value=21 Score=24.62 Aligned_cols=7 Identities=71% Similarity=1.265 Sum_probs=5.3
Q ss_pred CCCcccc
Q 038755 246 KPTYKYN 252 (321)
Q Consensus 246 ~PTYK~~ 252 (321)
.|||||-
T Consensus 45 NPTYkyf 51 (52)
T PF10515_consen 45 NPTYKYF 51 (52)
T ss_dssp SCTCHHC
T ss_pred CCceecc
Confidence 4899984
No 34
>PF04430 DUF498: Protein of unknown function (DUF498/DUF598); InterPro: IPR007523 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This is entry represents an essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I) []. The crystal structure of this protein revealed a 3-layer beta+alpha/beta/alpha topology [].; PDB: 2K2E_A 2Q4Q_B 2AB1_A 2FVT_A 2CYJ_A 1IHN_B 2GM2_A 3CPK_A 2FI9_A.
Probab=25.19 E-value=86 Score=24.71 Aligned_cols=34 Identities=29% Similarity=0.466 Sum_probs=23.6
Q ss_pred EEEecCCCCC--cccHHHHhccCCCCceEEEeecCc
Q 038755 36 VTWNMNGQVS--YEDLVELIGSNRKFDLLIVGLQEV 69 (321)
Q Consensus 36 ~TwNv~~~~~--~~~l~~~l~~~~~~Di~viglQE~ 69 (321)
..|++.+... .+++..++...++||+++||.-+-
T Consensus 29 ~~w~~~~~~~l~~~~l~~l~~~~p~pe~liiGtG~~ 64 (110)
T PF04430_consen 29 RDWKVKSPHDLTPEDLEELLELEPKPEVLIIGTGKR 64 (110)
T ss_dssp EEEHHSSTTCEETHHHHHHHCTCCS-SEEEEEETTS
T ss_pred cCcCCCCcccCCHHHHHHHHhccCCCcEEEEccCCc
Confidence 6788665543 456777776567999999999553
No 35
>KOG3363 consensus Uncharacterized conserved nuclear protein [Function unknown]
Probab=24.51 E-value=68 Score=27.64 Aligned_cols=36 Identities=28% Similarity=0.458 Sum_probs=23.7
Q ss_pred EEEEEecCCCCC-cccHHHHhc-cCCCCceEEEeecCc
Q 038755 34 CVVTWNMNGQVS-YEDLVELIG-SNRKFDLLIVGLQEV 69 (321)
Q Consensus 34 ~v~TwNv~~~~~-~~~l~~~l~-~~~~~Di~viglQE~ 69 (321)
.+++|||..... ..|--.+|. -++.+|+.++|+=.-
T Consensus 85 ~~lSW~v~~fedIt~dSLslF~tlePkidlLIvG~Gd~ 122 (196)
T KOG3363|consen 85 LLLSWSVRTFEDITTDSLSLFQTLEPKIDLLIVGCGDK 122 (196)
T ss_pred ceeeccCCChhhcCcchHhHhhhcCCCccEEEEecCCc
Confidence 478999986543 223223444 567899999998654
No 36
>cd05125 Mth938_2P1-like Mth938_2P1-like domain. This model contains sequences that are similar to 2P1, a partially characterized nuclear protein, which is homologous to E3-3 from rat and known to be alternatively spliced. Its function is unknown. This family is part of the Mth938 family, for which structures, but no functional data are available.
Probab=24.31 E-value=53 Score=26.42 Aligned_cols=34 Identities=21% Similarity=0.350 Sum_probs=23.8
Q ss_pred EEEEecCCCCC--cccHHHHhccCCCCceEEEeecC
Q 038755 35 VVTWNMNGQVS--YEDLVELIGSNRKFDLLIVGLQE 68 (321)
Q Consensus 35 v~TwNv~~~~~--~~~l~~~l~~~~~~Di~viglQE 68 (321)
+..||+..... .+++..++...+.||+++||.=.
T Consensus 29 ~~~W~~~~~~~l~~~~l~~l~~~~~~peiliiGtG~ 64 (114)
T cd05125 29 VFSWNVSSFEDITEESLSLFELLEPRPEILVIGTGR 64 (114)
T ss_pred eeccCCCChhhCCHHHHHHHHhccCCCCEEEEccCC
Confidence 67899887543 34566565445689999999855
No 37
>PF07829 Toxin_14: Alpha-A conotoxin PIVA-like protein; InterPro: IPR012498 Alpha-A conotoxin PIVA (P55963 from SWISSPROT) is the major paralytic toxin found in the venom produced by the piscivorous snail Conus purpurascens. This peptide acts by blocking the acetylcholine-binding site of the nicotinic acetylcholine receptor at the neuromuscular junction []. The overall shape of the peptide is described as an "iron" with a highly charged hydrophilic loop of 15S-19R forming the "handle" domain that is exposed to the exterior of the protein. The stability of the conotoxin is primarily governed by three disulphide bonds. A triangular structural motif formed by residues 19R, 12H and 6Y is thought to constitute a "binding core" that is important in binding to the acetylcholine receptor []. ; GO: 0030550 acetylcholine receptor inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 1PQR_A 1P1P_A.
Probab=23.98 E-value=25 Score=20.08 Aligned_cols=11 Identities=45% Similarity=0.730 Sum_probs=6.1
Q ss_pred CCCCCcccccc
Q 038755 262 YKVRVPSWTDR 272 (321)
Q Consensus 262 ~k~R~PsWcDR 272 (321)
.|---|+||||
T Consensus 16 ckv~rp~yc~~ 26 (26)
T PF07829_consen 16 CKVGRPPYCDR 26 (26)
T ss_dssp STST--HHHHS
T ss_pred cccCCCCcCCC
Confidence 34456899987
No 38
>PRK10328 DNA binding protein, nucleoid-associated; Provisional
Probab=20.52 E-value=67 Score=26.70 Aligned_cols=28 Identities=14% Similarity=0.351 Sum_probs=18.2
Q ss_pred CCCCccc-cCCC--CCCCCCCCCCCccccccee
Q 038755 245 FKPTYKY-NIGS--SDYDTSYKVRVPSWTDRIL 274 (321)
Q Consensus 245 F~PTYK~-~~~s--~~ydts~k~R~PsWcDRIL 274 (321)
=||-|+| +.+. ..| +..-|.|.|.-.-|
T Consensus 93 ~p~KYr~~d~~G~~kTW--TGrGR~P~wi~~al 123 (134)
T PRK10328 93 RPAKYRFTDVNGETKTW--TGQGRTPKPIAQAL 123 (134)
T ss_pred CCCccCCCCCCCCcCcc--cCCCCCcHHHHHHH
Confidence 4788988 4422 233 35679999986554
Done!