Query 038755
Match_columns 321
No_of_seqs 148 out of 1287
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 04:15:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038755.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038755hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mtc_A Type II inositol-1,4,5- 100.0 1.4E-85 4.9E-90 614.7 33.3 282 25-313 2-304 (313)
2 4a9c_A Phosphatidylinositol-3, 100.0 1.8E-83 6E-88 601.8 31.5 282 27-313 4-314 (316)
3 2xsw_A 72 kDa inositol polypho 100.0 6.1E-79 2.1E-83 582.5 31.4 291 20-315 15-325 (357)
4 1i9z_A Synaptojanin, phosphati 100.0 1.3E-76 4.3E-81 565.1 30.9 296 10-317 4-322 (347)
5 2imq_X Salivary nitrophorin; f 100.0 2E-65 6.9E-70 475.9 21.2 268 26-312 2-282 (282)
6 4gz1_A Tyrosyl-DNA phosphodies 99.8 1.1E-17 3.7E-22 148.4 21.2 149 31-198 8-162 (256)
7 4fva_A 5'-tyrosyl-DNA phosphod 99.8 1.6E-17 5.3E-22 147.6 16.2 157 29-201 10-172 (256)
8 4f1h_A Tyrosyl-DNA phosphodies 99.8 6.6E-17 2.3E-21 141.3 19.8 148 32-198 3-156 (250)
9 3teb_A Endonuclease/exonucleas 99.7 6.9E-17 2.3E-21 145.1 17.1 151 32-199 3-181 (266)
10 4gew_A 5'-tyrosyl-DNA phosphod 99.7 6.9E-17 2.4E-21 154.3 18.1 158 28-201 115-278 (362)
11 1zwx_A SMCL, sphingomyelinase- 99.7 1.5E-15 5E-20 139.5 16.7 158 32-201 10-202 (301)
12 1ako_A Exonuclease III; AP-end 99.7 4.7E-16 1.6E-20 139.7 12.6 148 33-201 1-158 (268)
13 3l1w_A Uncharacterized protein 99.6 6E-15 2E-19 132.4 16.2 151 33-198 1-170 (257)
14 3g6s_A Putative endonuclease/e 99.6 5.7E-15 2E-19 133.4 15.6 152 32-198 3-176 (267)
15 3i41_A Beta-hemolysin; beta to 99.6 1.4E-14 4.7E-19 135.4 16.4 159 30-200 27-220 (317)
16 2ddr_A Sphingomyelin phosphodi 99.6 4.2E-14 1.4E-18 129.9 17.1 158 30-199 7-200 (306)
17 3mpr_A Putative endonuclease/e 99.6 5.9E-14 2E-18 129.5 16.5 156 30-198 4-182 (298)
18 2jc4_A Exodeoxyribonuclease II 99.5 1.9E-14 6.4E-19 128.4 9.7 145 33-200 1-152 (256)
19 1vyb_A ORF2 contains A reverse 99.5 4.2E-13 1.4E-17 118.1 12.6 140 31-199 6-150 (238)
20 3g91_A MTH0212, exodeoxyribonu 99.4 6.1E-13 2.1E-17 120.1 12.7 146 32-200 3-157 (265)
21 2voa_A AF_EXO, XTHA, exodeoxyr 99.4 2.1E-12 7.1E-17 115.4 15.4 141 33-199 2-151 (257)
22 2jc5_A Exodeoxyribonuclease; h 99.4 3.5E-13 1.2E-17 120.2 8.2 144 33-200 2-155 (259)
23 2o3h_A DNA-(apurinic or apyrim 99.4 8.9E-13 3E-17 120.0 8.4 146 29-199 25-182 (285)
24 2j63_A AP-endonuclease; base e 99.3 1.7E-11 5.8E-16 120.8 16.1 73 31-108 148-232 (467)
25 1wdu_A TRAS1 ORF2P; four-layer 99.3 2.1E-11 7E-16 108.9 15.1 139 31-199 18-159 (245)
26 1hd7_A DNA-(apurinic or apyrim 99.3 3.5E-12 1.2E-16 118.8 10.2 148 29-199 58-215 (318)
27 2a40_B Deoxyribonuclease-1; WA 99.2 2.2E-11 7.4E-16 110.0 5.8 150 33-200 1-174 (260)
28 1sr4_B CDT B, cytolethal diste 99.1 2.2E-10 7.7E-15 104.1 10.0 146 33-196 5-179 (261)
29 3ngq_A CCR4-NOT transcription 99.1 8.2E-10 2.8E-14 106.6 13.6 176 30-213 29-268 (398)
30 2ei9_A Non-LTR retrotransposon 98.9 7.3E-09 2.5E-13 93.0 12.6 125 32-199 7-132 (240)
31 4b8c_D Glucose-repressible alc 98.9 1.4E-10 4.7E-15 120.0 0.3 171 27-201 389-610 (727)
32 2f1n_A CDT B, cytolethal diste 98.8 2.6E-08 9E-13 89.9 9.7 61 131-200 130-191 (262)
33 2yka_B ORF57 protein, 52 kDa i 60.6 2.4 8.3E-05 23.4 0.0 8 266-273 8-15 (26)
34 3pt1_A UPF0364 protein YMR027W 38.1 7.4 0.00025 37.8 0.3 17 184-200 375-391 (471)
35 1p1p_A AA-conotoxin PIVA; neur 37.2 9.2 0.00032 21.0 0.5 9 265-273 18-26 (26)
36 2fvt_A Conserved hypothetical 32.7 41 0.0014 26.7 3.8 34 35-68 42-77 (135)
37 1pqr_A Alpha-A-conotoxin EIVA; 31.4 12 0.0004 21.4 0.3 12 262-273 16-27 (31)
38 1hnr_A H-NS; histone-like prot 23.4 37 0.0013 21.9 1.7 29 246-274 4-33 (47)
39 2fi9_A Outer membrane protein; 23.0 57 0.002 25.5 3.1 34 35-68 44-78 (128)
No 1
>3mtc_A Type II inositol-1,4,5-trisphosphate 5-phosphatas; INPP5BA,phosphoinositide 5-phosphatase, inositol signalling, phosphatase, magnesium; HET: PIF; 2.40A {Homo sapiens} PDB: 3n9v_A
Probab=100.00 E-value=1.4e-85 Score=614.70 Aligned_cols=282 Identities=30% Similarity=0.537 Sum_probs=256.2
Q ss_pred CcccCceeEEEEEEecCCCCCcccHHHHhc-cCCCCceEEEeecCccch-------------hHHHHHHHHcC--CCcEE
Q 038755 25 FSRNSDLCICVVTWNMNGQVSYEDLVELIG-SNRKFDLLIVGLQEVPRN-------------NIARLLKRAVA--ETHDL 88 (321)
Q Consensus 25 ~~~~~~l~v~v~TwNv~~~~~~~~l~~~l~-~~~~~Di~viglQE~~~~-------------~~~~~l~~~l~--~~y~~ 88 (321)
|+..++++|+|+||||||..|+++|.+||. ...+||||||||||+... .|...+.++|+ ..|.+
T Consensus 2 yt~~~~~~i~v~TwNvng~~~~~~l~~wL~~~~~~pDI~viGlQE~~l~~~~~~~~~~~~~~~W~~~i~~~L~~~~~Y~~ 81 (313)
T 3mtc_A 2 YTYIQNFRFFAGTYNVNGQSPKECLRLWLSNGIQAPDVYCVGFQELDLSKEAFFFHDTPKEEEWFKAVSEGLHPDAKYAK 81 (313)
T ss_dssp CEEEEEEEEEEEEEECTTCCCCSCTHHHHSSSCCCCSEEEEEEECSCCSHHHHTTCCCHHHHHHHHHHHHHSCTTSCEEE
T ss_pred CceeeccEEEEEEEEcCCccCchhHHHHhcccCCCCCeEEEEEEecccchhhhcccCcchHHHHHHHHHHhcCCCCCEEE
Confidence 778899999999999999999999999997 346899999999999642 36777888886 36999
Q ss_pred EEEeeeeeEEEEEEecCCCcccccceeeeeEeecCccccccccCceEEEEEEEcCeEEEEEeecCCCCCccHHHHHHHHH
Q 038755 89 FAKAIMQSLQLFVFGPRNSEPLVKELKLDKYSVGGFGGFIGRKKGAVAIRINYKGITMVFISCHLSAHARNVEERNSECR 168 (321)
Q Consensus 89 v~~~~l~gi~l~vf~~~~~~~~i~~~~~~~~~~gg~gg~~g~nKGaV~v~~~i~~~~i~fin~HL~a~~~~~~~R~~~~~ 168 (321)
+.+.+|+|+.|+||+|+++.++|++++++++++ |++|.+| |||||+++|.+++++||||||||+||++++++||+|+.
T Consensus 82 v~s~~lvGl~l~Vfvr~~~~~~i~~v~~~~v~t-G~~g~~G-NKGaV~ir~~~~~ts~cFVnsHLaA~~~~~~~Rn~d~~ 159 (313)
T 3mtc_A 82 VKLIRLVGIMLLLYVKQEHAAYISEVEAETVGT-GIMGRMG-NKGGVAIRFQFHNTSICVVNSHLAAHIEEYERRNQDYK 159 (313)
T ss_dssp EEEEEETTEEEEEEEEGGGGGGEEEEEEEEEEC-SGGGTST-TSEEEEEEEEETTEEEEEEEEECCCSGGGHHHHHHHHH
T ss_pred EEEechhhhhhhhhhhhhhhhhcceeEeeeecc-ccccccc-CCceEEEEEEECCcEEEEEeeccCCCchHHHHHHHHHH
Confidence 999999999999999999999999999999986 7888888 79999999999999999999999999999999999999
Q ss_pred HHHHhc-cCCCCC---C-CCCCcceEEEeccccccccCCCchhhHHHHhhhhHHHhhhhhHHHHHhhhcccCCccccCCc
Q 038755 169 HILHSL-FSKNQN---P-YAEPAQITVWLGDLNYRIQGLNTHPVRNIIHKDLQKLLTSKDQLLQEAERGQIFNGYCEGSL 243 (321)
Q Consensus 169 ~I~~~l-f~~~~~---~-~~~~~d~vf~~GDlNyRi~~~~~~~~~~~i~~~~~~~l~~~DQL~~~~~~~~~f~~f~E~~I 243 (321)
+|++.+ |..... + .+.+||++||+||||||++..+.++++++++++.++.|+++|||+++++++.+|.||.|++|
T Consensus 160 ~I~~~l~f~~~~~~~~~~~i~~~d~vfw~GDLNyRi~~~~~~~v~~~i~~~~~~~Ll~~DQL~~~~~~g~~f~gf~E~~I 239 (313)
T 3mtc_A 160 DICSRMQFCQPDPSLPPLTISNHDVILWLGDLNYRIEELDVEKVKKLIEEKDFQMLYAYDQLKIQVAAKTVFEGFTEGEL 239 (313)
T ss_dssp HHHHHCCBCCSCSSSCCBCTTSSSEEEEEEECCCCBCSSCHHHHHHHHHTTCHHHHHTTBHHHHHHHTTSSCTTCBCCCC
T ss_pred HHHHhcccCCCCCccCCccccCCceEEEeccccccccCCCHHHHHHHHhcCCHHHHHHhHHHHHHHHcCCccCCcccCCc
Confidence 999986 654321 1 24689999999999999985588899999999999999999999999999999999999999
Q ss_pred cCCCCccccCCCCCCCCCCCCCCcccccceeeecCCCccccceeeeeeeccCCCccCCcceEeEEEEEec
Q 038755 244 TFKPTYKYNIGSSDYDTSYKVRVPSWTDRILFKIDDPDKINAALHSYESIDDIYSSDHKPVKAHLCLTVN 313 (321)
Q Consensus 244 ~F~PTYK~~~~s~~ydts~k~R~PsWcDRIL~~~~~~~~~~~~~~~Y~s~~~~~~SDHkPV~a~f~l~~~ 313 (321)
+|||||||++|+++||||+|+|+|||||||||++.. ++++.|.|++++.+||||||+|.|.+++.
T Consensus 240 ~F~PTYKyd~~s~~ydts~k~R~PsWcDRIL~~~~~-----i~~~~Y~s~~~~~~SDHrPV~a~f~~~~~ 304 (313)
T 3mtc_A 240 TFQPTYKYDTGSDDWDTSEKCRAPAWCDRILWKGKN-----ITQLSYQSHMALKTSDHKPVSSVFDIGVR 304 (313)
T ss_dssp CSCCCBCBCTTSSSBCCSTTCCCCBCCEEEEEEESS-----EEEEEEEECTTCCSSSSCCEEEEEEEEEE
T ss_pred CcCCCccCcCCCcccccccCEecccccceEEEecCC-----eEEEeeeeccCccCCCccCeEEEEEEEEE
Confidence 999999999999999999999999999999998753 47889999999999999999999999664
No 2
>4a9c_A Phosphatidylinositol-3,4,5-trisphosphate 5-phosph; SGC, signalling, structural genomics consortium stockholm, magnesium binding, hydrolase; HET: B5F; 2.10A {Homo sapiens} PDB: 3nr8_B*
Probab=100.00 E-value=1.8e-83 Score=601.85 Aligned_cols=282 Identities=27% Similarity=0.455 Sum_probs=240.9
Q ss_pred ccCceeEEEEEEecCCCCCcccHHHHhcc------------CCCCceEEEeecCccch--hHHHHHHHHcC----CCcEE
Q 038755 27 RNSDLCICVVTWNMNGQVSYEDLVELIGS------------NRKFDLLIVGLQEVPRN--NIARLLKRAVA----ETHDL 88 (321)
Q Consensus 27 ~~~~l~v~v~TwNv~~~~~~~~l~~~l~~------------~~~~Di~viglQE~~~~--~~~~~l~~~l~----~~y~~ 88 (321)
++..|+|+|+||||||+.|+++|.+||.. ..+||||||||||+.+. .|...|.++|+ ..|.+
T Consensus 4 ~~~~i~i~vgTwNv~g~~p~~~L~~wl~~~~~~~~~~~~~~~~~~DiyviG~QE~~~~~~~W~~~i~~~L~~~~~~~Y~~ 83 (316)
T 4a9c_A 4 EPDMISVFIGTWNMGSVPPPKNVTSWFTSKGLGKTLDEVTVTIPHDIYVFGTQENSVGDREWLDLLRGGLKELTDLDYRP 83 (316)
T ss_dssp --CEEEEEEEEEECTTSCCCSCCHHHHTTCSEEECCCTTGGGSCCSEEEEEEESCCSCHHHHHHHHHHHHHHHHSCCCEE
T ss_pred CCCeEEEEEEEeEcCCcCCCcchhHhhcccccccCcccccccCCCcEEEEeccccccchhHHHHHHHHHhccccCCCEEE
Confidence 46789999999999999999999999851 24689999999999763 47777777664 57999
Q ss_pred EEEeeeeeEEEEEEecCCCcccccceeeeeEeecCccccccccCceEEEEEEEcCeEEEEEeecCCCCCccHHHHHHHHH
Q 038755 89 FAKAIMQSLQLFVFGPRNSEPLVKELKLDKYSVGGFGGFIGRKKGAVAIRINYKGITMVFISCHLSAHARNVEERNSECR 168 (321)
Q Consensus 89 v~~~~l~gi~l~vf~~~~~~~~i~~~~~~~~~~gg~gg~~g~nKGaV~v~~~i~~~~i~fin~HL~a~~~~~~~R~~~~~ 168 (321)
+.+.+|+|++|+||+|+++.++|++++++++++ |++|.+| |||||+|+|.+++++||||||||+||++++++||+|+.
T Consensus 84 v~s~~L~gi~l~Vfvk~~~~~~I~~v~~~~v~t-G~~g~~G-NKGaV~ir~~~~~ts~~FVn~HLaAg~~~~~~Rn~d~~ 161 (316)
T 4a9c_A 84 IAMQSLWNIKVAVLVKPEHENRISHVSTSSVKT-GIANTLG-NKGAVGVSFMFNGTSFGFVNCHLTSGNEKTARRNQNYL 161 (316)
T ss_dssp EEEEEETTEEEEEEECGGGGGGEEEEEEEEEEE-C-------CEEEEEEEEEETTEEEEEEEEECCCSTTCHHHHHHHHH
T ss_pred EEeeeehheeeeeEEeHHHhhhCcccccceeee-eeeEecC-CCceEEEEEEECCcEEEEEEeccccCchHHHHHHHHHH
Confidence 999999999999999999999999999999987 7888888 79999999999999999999999999999999999999
Q ss_pred HHHHhc-cCCCCC---CCCCCcceEEEeccccccccCCCchhhHHHHhhhhHHHhhhhhHHHHHhhhcccCCccccCCcc
Q 038755 169 HILHSL-FSKNQN---PYAEPAQITVWLGDLNYRIQGLNTHPVRNIIHKDLQKLLTSKDQLLQEAERGQIFNGYCEGSLT 244 (321)
Q Consensus 169 ~I~~~l-f~~~~~---~~~~~~d~vf~~GDlNyRi~~~~~~~~~~~i~~~~~~~l~~~DQL~~~~~~~~~f~~f~E~~I~ 244 (321)
+|++.+ |..... .....+|++||+|||||||++ +.+++.++++++.++.|+++|||+++++++.+|.||.|++|+
T Consensus 162 ~I~~~l~f~~~~~~~~d~~~~~d~vfw~GDLNyRi~~-~~~~v~~~i~~~~~~~Ll~~DQL~~e~~~g~~F~gf~E~~i~ 240 (316)
T 4a9c_A 162 DILRLLSLGDRQLNAFDISLRFTHLFWFGDLNYRLDM-DIQEILNYISRKEFEPLLRVDQLNLEREKHKVFLRFSEEEIS 240 (316)
T ss_dssp HHHHHCCC-------CCTTTTSSEEEEEEECCCCBSS-CHHHHHHHHHTTCCHHHHTTBHHHHHHHTTSSSTTCBCCCCC
T ss_pred HHHHhCCCCCCCcCccccCCcCCeEEEcCCccCCcCC-CHHHHHHHHhcccHHHHhccChHHHHHhcCCcccccccCCcc
Confidence 999986 543211 123468999999999999998 888999999999999999999999999999999999999999
Q ss_pred CCCCccccCCCC-CCC------CCCCCCCcccccceeeecCCCccccceeeeeeeccCCCccCCcceEeEEEEEec
Q 038755 245 FKPTYKYNIGSS-DYD------TSYKVRVPSWTDRILFKIDDPDKINAALHSYESIDDIYSSDHKPVKAHLCLTVN 313 (321)
Q Consensus 245 F~PTYK~~~~s~-~yd------ts~k~R~PsWcDRIL~~~~~~~~~~~~~~~Y~s~~~~~~SDHkPV~a~f~l~~~ 313 (321)
|||||||+.|++ .|+ +++|+|+|||||||||++.+... ++++.|.|++++.+||||||+|.|.+.|.
T Consensus 241 F~PTYKy~~~s~~~y~~~~~~~~~~k~R~PaWcDRIL~~~~~~~~--i~~~~Y~s~~~~~~SDHrPV~a~f~v~V~ 314 (316)
T 4a9c_A 241 FPPTYRYERGSRDTYAWHKQKPTGVRTNVPSWCDRILWKSYPETH--IICNSYGCTDDIVTSDHSPVFGTFEVGVT 314 (316)
T ss_dssp SCCCBCBCTTCSSCBCCC--------CCCCBCCEEEEEEECTTCC--EEEEEEEECSSCCSSSSCCEEEEEEEECC
T ss_pred cCCCccccCCCcccccccccccccccccCCcccceEEeccCCCCc--eEEeeecccCCcCCCCcccEEEEEEEEEE
Confidence 999999999995 564 55678999999999999876433 47889999999999999999999999885
No 3
>2xsw_A 72 kDa inositol polyphosphate 5-phosphatase; inositol signalling, SGC stockholm, structural genomics CONS hydrolase; 1.90A {Homo sapiens}
Probab=100.00 E-value=6.1e-79 Score=582.52 Aligned_cols=291 Identities=27% Similarity=0.477 Sum_probs=257.3
Q ss_pred hhhcCCcccCceeEEEEEEecCCC-CCcccHHHHhc---cCCCCceEEEeecCccch--hHHHHHHHHcCCCcEEEEEee
Q 038755 20 ENHCNFSRNSDLCICVVTWNMNGQ-VSYEDLVELIG---SNRKFDLLIVGLQEVPRN--NIARLLKRAVAETHDLFAKAI 93 (321)
Q Consensus 20 ~~~~~~~~~~~l~v~v~TwNv~~~-~~~~~l~~~l~---~~~~~Di~viglQE~~~~--~~~~~l~~~l~~~y~~v~~~~ 93 (321)
+...+|++.++++|+|+||||++. .++++|.+|+. ....||||||||||+... .|...|.++++..|+++.+.+
T Consensus 15 ~el~~~~~~~~l~i~v~TwNv~g~~~~~~~L~~~l~~~~~~~~pDI~viGlQEi~~~~~~W~~~l~~~L~~~Y~~v~s~~ 94 (357)
T 2xsw_A 15 DELARYFPDRNVALFVATWNMQGQKELPPSLDEFLLPAEADYAQDLYVIGVQEGCSDRREWETRLQETLGPHYVLLSSAA 94 (357)
T ss_dssp HHHHHHCTTCEEEEEEEEEECTTCSSCCSCCHHHHSCTTCCSCCSEEEEEEESCCSCHHHHHHHHHHHHCTTEEEEEEEE
T ss_pred hhhhhcCCCCCceEEEEEEecCCCCCCcccHHHHhccccccCCCCEEEEEeeeccchHHHHHHHHHHHhCCcccchhhhh
Confidence 334567888999999999999985 45679999985 235799999999999864 588889999999999999999
Q ss_pred eeeEEEEEEecCCCcccccceeeeeEeecCccccccccCceEEEEEEEcCeEEEEEeecCCCCCccHHHHHHHHHHHHHh
Q 038755 94 MQSLQLFVFGPRNSEPLVKELKLDKYSVGGFGGFIGRKKGAVAIRINYKGITMVFISCHLSAHARNVEERNSECRHILHS 173 (321)
Q Consensus 94 l~gi~l~vf~~~~~~~~i~~~~~~~~~~gg~gg~~g~nKGaV~v~~~i~~~~i~fin~HL~a~~~~~~~R~~~~~~I~~~ 173 (321)
|+|++|+||+|+++.++|++++++.+++ |++|.+| |||||+++|.+++++||||||||+||++++++||+|+.+|++.
T Consensus 95 l~g~~l~Vfvr~~~~~~i~~v~~~~v~t-G~~g~~g-NKGav~vr~~~~~t~~~Fvn~HLaa~~~~~~~Rn~d~~~I~~~ 172 (357)
T 2xsw_A 95 HGVLYMSLFIRRDLIWFCSEVECSTVTT-RIVSQIK-TKGALGISFTFFGTSFLFITSHFTSGDGKVAERLLDYTRTVQA 172 (357)
T ss_dssp ETTEEEEEEEEGGGGGGBBCCEEEEEEE-EEEETTE-EEEEEEEEEEETTEEEEEEEEECCCSTTCHHHHHHHHHHHHHH
T ss_pred hhhEEEEEEEchHHhhcCceeEeccccc-ccccccc-cccEEEEEEEECCeEEEEEEEccCCCCchHHHHHHHHHHHHHH
Confidence 9999999999999999999999988877 6888888 7999999999999999999999999999999999999999998
Q ss_pred c-cCCCCC---C-------CCCCcceEEEeccccccccCCCchhhHHHHhh---hhHHHhhhhhHHHHHhhhcccCCccc
Q 038755 174 L-FSKNQN---P-------YAEPAQITVWLGDLNYRIQGLNTHPVRNIIHK---DLQKLLTSKDQLLQEAERGQIFNGYC 239 (321)
Q Consensus 174 l-f~~~~~---~-------~~~~~d~vf~~GDlNyRi~~~~~~~~~~~i~~---~~~~~l~~~DQL~~~~~~~~~f~~f~ 239 (321)
+ |..... + ...++|++||+||||||++. +.+++.+++++ +.++.|+++|||..+++++.+|.||.
T Consensus 173 l~f~~~~~~~~~~~~~~~~~~~~~d~vfw~GDlNyRi~~-~~~~v~~~i~~~~~~~~~~Ll~~DQL~~~~~~g~~F~gf~ 251 (357)
T 2xsw_A 173 LVLPRNVPDTNPYRSSAADVTTRFDEVFWFGDFNFRLSG-GRTVVDALLCQGLVVDVPALLQHDQLIREMRKGSIFKGFQ 251 (357)
T ss_dssp CCCCSSSCCSSGGGCBTTBGGGSSSEEEEEEECCCCBSS-CHHHHHHHHC---CCCHHHHHTTBHHHHHHHHTSSSTTCB
T ss_pred hcccccccccccccccccccccccceEEEecccCccccc-chHHHHHHHhhcchhhHHHHHhcChhHHHHhccccccCcc
Confidence 7 433211 1 12368999999999999999 67788888863 56788999999999999999999999
Q ss_pred cCCccCCCCccccCCCCCCCCCCCCCCcccccceeeecCCCccccceeeeeeeccCCCccCCcceEeEEEEEecCC
Q 038755 240 EGSLTFKPTYKYNIGSSDYDTSYKVRVPSWTDRILFKIDDPDKINAALHSYESIDDIYSSDHKPVKAHLCLTVNKH 315 (321)
Q Consensus 240 E~~I~F~PTYK~~~~s~~ydts~k~R~PsWcDRIL~~~~~~~~~~~~~~~Y~s~~~~~~SDHkPV~a~f~l~~~~~ 315 (321)
|++|+|||||||+.|+++||||+|+|+|||||||||++.....+ +++.|.+++++.+||||||+|.|.+.+.+.
T Consensus 252 E~~I~F~PTYKy~~~t~~Ydts~k~R~PaWcDRIL~~~~~~~~i--~~~~Y~s~~~~~~SDHrPV~a~f~v~v~~~ 325 (357)
T 2xsw_A 252 EPDIHFLPSYKFDIGKDTYDSTSKQRTPSYTDRVLYRSRHKGDI--CPVSYSSCPGIKTSDHRPVYGLFRVKVRPG 325 (357)
T ss_dssp CCCCCSCCCBCBCTTSSSBCCSTTCCCCBCCEEEEEEESSTTSE--EEEEEEECTTCCSSSSCCEEEEEEEECCCC
T ss_pred ccCCCCCCCccccCCCccccccCCCCCCcccceEEEecCCCCce--EEEEeEecccccCCCcCCceeEEEEEEecC
Confidence 99999999999999999999999999999999999998765444 788999999999999999999999998653
No 4
>1i9z_A Synaptojanin, phosphatidylinositol phosphate phosphatase; spsynaptojanin, IPP5C, IP3, IP2,, hydrolase; HET: 2IP; 1.80A {Schizosaccharomyces pombe} SCOP: d.151.1.2 PDB: 1i9y_A*
Probab=100.00 E-value=1.3e-76 Score=565.15 Aligned_cols=296 Identities=32% Similarity=0.506 Sum_probs=262.8
Q ss_pred CccchhhHhhhhhcCCcccCceeEEEEEEecCCCCCcccHHHHhcc--CCCCceEEEeecCccch--------------h
Q 038755 10 TREGIQTVAVENHCNFSRNSDLCICVVTWNMNGQVSYEDLVELIGS--NRKFDLLIVGLQEVPRN--------------N 73 (321)
Q Consensus 10 ~~~~i~~~~~~~~~~~~~~~~l~v~v~TwNv~~~~~~~~l~~~l~~--~~~~Di~viglQE~~~~--------------~ 73 (321)
-++.|++.+.+++.+|+..++++|+|+||||++..|+++|.+||.. ..+||||||||||++.. .
T Consensus 4 ~~~~~~~~l~~r~~e~~~~~~~~i~v~TwNv~g~~~~~~l~~~L~~~~~~~~DI~viglQEiv~l~~~~~~~~~~~~~~~ 83 (347)
T 1i9z_A 4 IHEYVNHELRKRENEFSEHKNVKIFVASYNLNGCSATTKLENWLFPENTPLADIYVVGFQEIVQLTPQQVISADPAKRRE 83 (347)
T ss_dssp HHHHHHHHHHHTGGGTEEEEEEEEEEEEEECTTCCCCSCCHHHHSCSSSCCCSEEEEEEECSSCCC-----CCCHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCCCCCcEEEEEeEecCCCCCchhHHHHhccccCCCCCEEEEEeEEeecCchhhhcccCchhHHH
Confidence 3578999999999999999999999999999999998899999963 36899999999999642 2
Q ss_pred HHHHHHHHcC------CCcEEEEEeeeeeEEEEEEecCCCcccccceeeeeEeecCccccccccCceEEEEEEEcCeEEE
Q 038755 74 IARLLKRAVA------ETHDLFAKAIMQSLQLFVFGPRNSEPLVKELKLDKYSVGGFGGFIGRKKGAVAIRINYKGITMV 147 (321)
Q Consensus 74 ~~~~l~~~l~------~~y~~v~~~~l~gi~l~vf~~~~~~~~i~~~~~~~~~~gg~gg~~g~nKGaV~v~~~i~~~~i~ 147 (321)
|...+.++|+ ..|.++.+.+|+|++|+||+|+++.++|++++++.+++ |++|.+| |||||+++|.+++++||
T Consensus 84 w~~~i~~~L~~~~~~~~~Y~~v~s~~l~g~~L~Vfvr~~~~~~i~~v~~~~v~t-G~~g~~g-nKGav~vr~~~~~~~l~ 161 (347)
T 1i9z_A 84 WESCVKRLLNGKCTSGPGYVQLRSGQLVGTALMIFCKESCLPSIKNVEGTVKKT-GLGGVSG-NKGAVAIRFDYEDTGLC 161 (347)
T ss_dssp HHHHHHHHHHHTCCSSCCEEEEEEEEETTEEEEEEEEGGGGGGEEEEEEEEEEC-CCC-----CCEEEEEEEEETTEEEE
T ss_pred HHHHHHHHHhhcccCCCceeEEEEeeccceEEEEEEehHhhhhccceeeeeEec-cCCCccC-CCceEEEEEEECCeEEE
Confidence 5566777773 68999999999999999999999999999999888776 7888888 79999999999999999
Q ss_pred EEeecCCCCCccHHHHHHHHHHHHHhc-cCCCCCCCCCCcceEEEeccccccccCCCchhhHHHHhhhhHHHhhhhhHHH
Q 038755 148 FISCHLSAHARNVEERNSECRHILHSL-FSKNQNPYAEPAQITVWLGDLNYRIQGLNTHPVRNIIHKDLQKLLTSKDQLL 226 (321)
Q Consensus 148 fin~HL~a~~~~~~~R~~~~~~I~~~l-f~~~~~~~~~~~d~vf~~GDlNyRi~~~~~~~~~~~i~~~~~~~l~~~DQL~ 226 (321)
||||||+||+++.++|++|+.+|++.+ |... ..+.+||++||+||||||++. +.+++.++++++.+..|+++|||.
T Consensus 162 fvn~HLaa~~~~~~~R~~d~~~I~~~l~f~~~--~~i~~~d~v~~~GDlNyRi~~-~~~~v~~~i~~~~~~~Ll~~DqL~ 238 (347)
T 1i9z_A 162 FITSHLAAGYTNYDERDHDYRTIASGLRFRRG--RSIFNHDYVVWFGDFNYRISL-TYEEVVPCIAQGKLSYLFEYDQLN 238 (347)
T ss_dssp EEEEECCCCSSCHHHHHHHHHHHHHHCCCGGG--CCTTSSSEEEEEEECCCCBSS-CHHHHHHHHHTTCHHHHHTTBHHH
T ss_pred EEEecCCCCCccHHHHHHHHHHHHHhhccCcc--cccccCccEEEecccccccCC-CHHHHHHHHhhccHHHhhcccHHH
Confidence 999999999999999999999999886 4332 124678999999999999998 788999999998899999999999
Q ss_pred HHhhhcccCCccccCCccCCCCccccCCCCCCCCCCCCCCcccccceeeecCCCccccceeeeeeeccCCCccCCcceEe
Q 038755 227 QEAERGQIFNGYCEGSLTFKPTYKYNIGSSDYDTSYKVRVPSWTDRILFKIDDPDKINAALHSYESIDDIYSSDHKPVKA 306 (321)
Q Consensus 227 ~~~~~~~~f~~f~E~~I~F~PTYK~~~~s~~ydts~k~R~PsWcDRIL~~~~~~~~~~~~~~~Y~s~~~~~~SDHkPV~a 306 (321)
++++++.+|.||.|++|+|+|||||+.++++||||+|+|+|||||||||++ .+ ++..|.+++ +..|||+||+|
T Consensus 239 ~~~~~~~~f~~f~E~~i~F~PTYK~~~~~~~yd~s~k~R~PsWcDRIL~~~----~l--~~~~Y~~~~-~~~SDH~PV~a 311 (347)
T 1i9z_A 239 KQMLTGKVFPFFSELPITFPPTYKFDIGTDIYDTSDKHRVPAWTDRILYRG----EL--VPHSYQSVP-LYYSDHRPIYA 311 (347)
T ss_dssp HHHHTTSSSTTCBCCCCCSCCCBCBCTTSSCBCCSTTCCCCBCCEEEEEES----SC--EEEEEEECC-CCSSSBCCEEE
T ss_pred HHHhcCCcccccccCCCCCCCCcccCCCCccccccccccCCcccceEEEeC----CE--EEEEEEecC-ccCCCcCCcee
Confidence 999999999999999999999999999999999999999999999999976 23 678999997 99999999999
Q ss_pred EEEEEecCCCC
Q 038755 307 HLCLTVNKHSS 317 (321)
Q Consensus 307 ~f~l~~~~~~~ 317 (321)
.|.+.+..-+|
T Consensus 312 ~f~~~v~~~~~ 322 (347)
T 1i9z_A 312 TYEANIVKVDR 322 (347)
T ss_dssp EEEEEEEEECH
T ss_pred EEEEEEecCCH
Confidence 99999865543
No 5
>2imq_X Salivary nitrophorin; ferrous heme, beta-sandwich, transport protein; HET: HEM; 1.30A {Cimex lectularius} SCOP: d.151.1.2 PDB: 1ntf_A* 1y21_A* 1yjh_A* 1si6_X*
Probab=100.00 E-value=2e-65 Score=475.94 Aligned_cols=268 Identities=23% Similarity=0.391 Sum_probs=231.0
Q ss_pred cccCceeEEEEEEecCCCCCcccHHHHhc--cCCCCceEEEeecCccch--------hHHHHHHHHcC-CCcEEEEE--e
Q 038755 26 SRNSDLCICVVTWNMNGQVSYEDLVELIG--SNRKFDLLIVGLQEVPRN--------NIARLLKRAVA-ETHDLFAK--A 92 (321)
Q Consensus 26 ~~~~~l~v~v~TwNv~~~~~~~~l~~~l~--~~~~~Di~viglQE~~~~--------~~~~~l~~~l~-~~y~~v~~--~ 92 (321)
++.++++|+|+||||++..|++++.+|+. ....||||||||||+... .|...+.++|+ ..|..+.+ .
T Consensus 2 ~~~~~~~i~V~T~Nv~~~~~~~~l~~wl~~~~~~~pDI~viglQEv~~~~~~~~~~~~w~~~l~~~L~~~~Y~~v~~~~~ 81 (282)
T 2imq_X 2 SPPAQLSVHTVSWNSGHERAPTNLEELLGLNSGETPDVIAVAVQGFGFQTDKPQQGPACVKNFQSLLTSKGYTKLKNTIT 81 (282)
T ss_dssp -CCSEEEEEEEEEEEETCCCCSCCHHHHTCTTSCCCSEEEEEEEESCTTTCTTCCHHHHHHHHHHHHHHTTEEEEEEEEC
T ss_pred CCCCCcEEEEEEEeCCCCcCchhHHHHhcccccCCCCEEEEEeeeeccccccchhhHHHHHHHHHhcCCCceEEEEeccC
Confidence 35678999999999998888888999996 357899999999999854 35667777776 37999888 7
Q ss_pred eeeeEEEEEEecCCCcccccceeeeeEeecCccccccccCceEEEEEEEcCeEEEEEeecCCCCCccHHHHHHHHHHHHH
Q 038755 93 IMQSLQLFVFGPRNSEPLVKELKLDKYSVGGFGGFIGRKKGAVAIRINYKGITMVFISCHLSAHARNVEERNSECRHILH 172 (321)
Q Consensus 93 ~l~gi~l~vf~~~~~~~~i~~~~~~~~~~gg~gg~~g~nKGaV~v~~~i~~~~i~fin~HL~a~~~~~~~R~~~~~~I~~ 172 (321)
+++|+.++||+|+++.+.++.+.+. ++.|.+| ||||+++++.+++++|||+||||+|++++.++|+++++.|++
T Consensus 82 ~~~G~~l~vf~k~~~~~~i~~~~~~-----~~~g~~g-~kGav~~r~~~~~~~~~fvn~HL~~~~~~~~~R~~~~~~I~~ 155 (282)
T 2imq_X 82 ETMGLTVYCLEKHLDQNTLKNETII-----VTVDDQK-KSGGIVTSFTIYNKRFSFTTSRMSDEDVTSTNTKYAYDTRLD 155 (282)
T ss_dssp SSEEEEEEEEGGGCCTTTCCCEEEE-----EECSTTS-CSEEEEEEEEETTEEEEEEEEECCTTCCCTTSSSSSCCGGGC
T ss_pred ceeEEEEEEEEccccCccceeeeec-----ccccccc-CCceEEEEEEECCEEEEEEEECCCCCCchHHHHHHHHHHHHH
Confidence 7899999999999988888776532 3345567 799999999999999999999999998888889999988887
Q ss_pred hccCCCCCCCCCCcceEEEeccccccccCCCchhhHHHHhhhhHHHhhhhhHHHHHhhhcccCCccccCCccCCCCcccc
Q 038755 173 SLFSKNQNPYAEPAQITVWLGDLNYRIQGLNTHPVRNIIHKDLQKLLTSKDQLLQEAERGQIFNGYCEGSLTFKPTYKYN 252 (321)
Q Consensus 173 ~lf~~~~~~~~~~~d~vf~~GDlNyRi~~~~~~~~~~~i~~~~~~~l~~~DQL~~~~~~~~~f~~f~E~~I~F~PTYK~~ 252 (321)
.+-. ..++|++||+||||||++. +.+++.++++++.+..|+++|||..+++ +.+|.+|.|++|+|+|||||+
T Consensus 156 ~~~~------~~~~~~vi~~GDfN~r~~~-~~~~~~~~i~~~~~~~l~~~DqL~~~~~-~~~f~~f~e~~i~f~PTYk~~ 227 (282)
T 2imq_X 156 YSKK------DDPSDFLFWIGDLNVRVET-NATHAKSLVDQNNIDGLMAFDQLKKAKE-QKLFDGWTEPQVTFKPTYKFK 227 (282)
T ss_dssp TTSS------SSCCSEEEEEEECSCCBCS-CHHHHHHHHHTTCHHHHHTTBTHHHHHH-TTSSTTCBCCCCCSCCCBCBC
T ss_pred hhhc------cCccceEEEecccccccCC-CHHHHHHHHhhccHHHHhhhhHHHHhhc-cccccccccCCcCCCCCcccc
Confidence 6421 2467899999999999999 7788999999888888999999999999 999999999999999999999
Q ss_pred CCCCCCCCCCCCCCcccccceeeecCCCccccceeeeeeeccCCCccCCcceEeEEEEEe
Q 038755 253 IGSSDYDTSYKVRVPSWTDRILFKIDDPDKINAALHSYESIDDIYSSDHKPVKAHLCLTV 312 (321)
Q Consensus 253 ~~s~~ydts~k~R~PsWcDRIL~~~~~~~~~~~~~~~Y~s~~~~~~SDHkPV~a~f~l~~ 312 (321)
.++++||+ .|+|||||||||++.....+ ++..|.+++++..|||+||+|.|.+++
T Consensus 228 ~~~~~y~~---~R~Psw~DrIl~~~~~~~~~--~~~~y~~~~~~~~SDH~PV~a~f~~~~ 282 (282)
T 2imq_X 228 PNTDEYDL---SATPSWTDRALYKSGTGKTI--QPLSYNSLTNYKQTEHRPVLAKFRVTL 282 (282)
T ss_dssp TTSSCBCT---TSCCBCCEEEEEECSSSCCE--EEEEEEECTTCCSSSSCCEEEEEEEEC
T ss_pred CCCccccc---cCCccccceEEEecCCCCce--EeeEecCCCCCCCCCcCCeEEEEEEEC
Confidence 99999996 59999999999998654434 788999998999999999999998864
No 6
>4gz1_A Tyrosyl-DNA phosphodiesterase 2; protein-DNA complex, DNA repair, 5'-DNA END processing, endonuclease/exonuclease/phosphatase domain; HET: DNA EPE; 1.50A {Mus musculus} PDB: 4gyz_A* 4gz0_A* 4gz2_A*
Probab=99.79 E-value=1.1e-17 Score=148.41 Aligned_cols=149 Identities=17% Similarity=0.246 Sum_probs=95.1
Q ss_pred eeEEEEEEecCCCCCcc------cHHHHhccCCCCceEEEeecCccchhHHHHHHHHcCCCcEEEEEeeeeeEEEEEEec
Q 038755 31 LCICVVTWNMNGQVSYE------DLVELIGSNRKFDLLIVGLQEVPRNNIARLLKRAVAETHDLFAKAIMQSLQLFVFGP 104 (321)
Q Consensus 31 l~v~v~TwNv~~~~~~~------~l~~~l~~~~~~Di~viglQE~~~~~~~~~l~~~l~~~y~~v~~~~l~gi~l~vf~~ 104 (321)
=.+.|+||||+|..... .+.+++. ...||| |||||+.... ...+.+.+.. |..... ...+.+..++.+
T Consensus 8 ~~l~v~swNi~g~~~~~~~~r~~~i~~~i~-~~~pDI--i~LQEv~~~~-~~~l~~~~~~-~~~~~~-~~~~~~~~~l~~ 81 (256)
T 4gz1_A 8 STISFITWNIDGLDGCNLPERARGVCSCLA-LYSPDV--VFLQEVIPPY-CAYLKKRAAS-YTIITG-NEEGYFTAILLK 81 (256)
T ss_dssp GEEEEEEEECCTTCCTTHHHHHHHHHHHHH-HHCCSE--EEEEEECHHH-HHHHHHHCTT-EEEEES-CSSSSEEEEEEE
T ss_pred CcEEEEEEEcCCCcCcCHHHHHHHHHHHHH-HcCCCE--EEEEcCCHHH-HHHHHhhccc-cceeec-cccCCceEEEEE
Confidence 36889999999865431 2556664 568998 8899987543 3445555543 333322 222333445555
Q ss_pred CCCcccccceeeeeEeecCccccccccCceEEEEEEEcCeEEEEEeecCCCCCccHHHHHHHHHHHHHhccCCCCCCCCC
Q 038755 105 RNSEPLVKELKLDKYSVGGFGGFIGRKKGAVAIRINYKGITMVFISCHLSAHARNVEERNSECRHILHSLFSKNQNPYAE 184 (321)
Q Consensus 105 ~~~~~~i~~~~~~~~~~gg~gg~~g~nKGaV~v~~~i~~~~i~fin~HL~a~~~~~~~R~~~~~~I~~~lf~~~~~~~~~ 184 (321)
++...... .... ...+..+ .++++.+.+...+..+.++|+||.+.......|.+|+..+.+.+-.. .
T Consensus 82 ~~~~~~~~---~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~v~~~Hl~~~~~~~~~~~~q~~~~~~~l~~~------~ 148 (256)
T 4gz1_A 82 KGRVKFKS---QEII---PFPNTKM-MRNLLCVNVSLGGNEFCLMTSHLESTREHSAERIRQLKTVLGKMQEA------P 148 (256)
T ss_dssp TTTEEEEE---EEEE---ECTTCSS-CCEEEEEEEEETTEEEEEEECBCCCSGGGHHHHHHHHHHHHHHHHHS------C
T ss_pred ecccccee---cccc---cCCcccc-cceEEEEEEEeCCEEEEEEeecccccccchhhhhHHHHHHhhhhhhc------c
Confidence 54332111 1111 1112222 47788899999999999999999998887788899998888765221 1
Q ss_pred CcceEEEecccccc
Q 038755 185 PAQITVWLGDLNYR 198 (321)
Q Consensus 185 ~~d~vf~~GDlNyR 198 (321)
....+|++||||.+
T Consensus 149 ~~~pvIl~GDfN~~ 162 (256)
T 4gz1_A 149 DSTTVIFAGDTNLR 162 (256)
T ss_dssp TTSEEEEEEECCCC
T ss_pred CcceEEEeCccCCC
Confidence 23469999999954
No 7
>4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans}
Probab=99.76 E-value=1.6e-17 Score=147.60 Aligned_cols=157 Identities=15% Similarity=0.202 Sum_probs=97.9
Q ss_pred CceeEEEEEEecCCCCCcc------cHHHHhccCCCCceEEEeecCccchhHHHHHHHHcCCCcEEEEEeeeeeEEEEEE
Q 038755 29 SDLCICVVTWNMNGQVSYE------DLVELIGSNRKFDLLIVGLQEVPRNNIARLLKRAVAETHDLFAKAIMQSLQLFVF 102 (321)
Q Consensus 29 ~~l~v~v~TwNv~~~~~~~------~l~~~l~~~~~~Di~viglQE~~~~~~~~~l~~~l~~~y~~v~~~~l~gi~l~vf 102 (321)
+..++.|+||||+|..... .+.++|. ...||| |||||+...... .+.+.++. |.........+.+..++
T Consensus 10 ~~~~l~v~s~Ni~g~~~~~~~~r~~~i~~~i~-~~~pDI--i~LQEv~~~~~~-~l~~~~~~-~~~~~~~~~~~~g~~il 84 (256)
T 4fva_A 10 KGFEVSVMSWNIDGLDGRSLLTRMKAVAHIVK-NVNPDI--LFLQEVVDRDLA-PIDKLQSL-YKIYYSNKGCQYYTAIL 84 (256)
T ss_dssp TTCEEEEEEEECCTTCCTTHHHHHHHHHHHHH-HHCCSE--EEEEEECSTTCH-HHHGGGGT-EEEEESSTTSSSEEEEE
T ss_pred CCCEEEEEEEecCCCCCcCHHHHHHHHHHHHH-HcCCCE--EEEEecChhHhH-HHHHhcCC-ceEeecCCCCCcceEEE
Confidence 4567999999998865432 2556674 568998 889999765433 34444443 33333333444556677
Q ss_pred ecCCCcccccceeeeeEeecCccccccccCceEEEEEEEcCeEEEEEeecCCCCCccHHHHHHHHHHHHHhccCCCCCCC
Q 038755 103 GPRNSEPLVKELKLDKYSVGGFGGFIGRKKGAVAIRINYKGITMVFISCHLSAHARNVEERNSECRHILHSLFSKNQNPY 182 (321)
Q Consensus 103 ~~~~~~~~i~~~~~~~~~~gg~gg~~g~nKGaV~v~~~i~~~~i~fin~HL~a~~~~~~~R~~~~~~I~~~lf~~~~~~~ 182 (321)
+++.+.. .....+.. ....+ .++++.+.+.+.+..+.++|+||.+......+|..++..+...+.....
T Consensus 85 ~~~~~~~----~~~~~~~~---~~~~~-~~~~~~~~~~~~g~~~~v~~~Hl~~~~~~~~~~~~q~~~~~~~~~~~~~--- 153 (256)
T 4fva_A 85 VSKMFDV----EKHDVIHF---QNSGM-YRTLQILEGSIGGLKVFLLNTHLESTREHRPQRCAQFGFCMDKVREIIA--- 153 (256)
T ss_dssp EETTCEE----EEEEEEEC---TTCSS-CCEEEEEEEEETTEEEEEEEEECCCSGGGHHHHHHHHHHHHHHHHHHHH---
T ss_pred Eeecccc----eecccccC---CCCcc-cceeEEEEEEeCCeEEEEEEecCCCCCcchHHHHHHHHHHHHHhhhhhh---
Confidence 7765431 11111211 11112 4678889999999999999999999887777777777766654210000
Q ss_pred CCCcceEEEeccccccccC
Q 038755 183 AEPAQITVWLGDLNYRIQG 201 (321)
Q Consensus 183 ~~~~d~vf~~GDlNyRi~~ 201 (321)
..+...+|++||||.+...
T Consensus 154 ~~~~~~vIl~GDfN~~~~~ 172 (256)
T 4fva_A 154 QNPGALVFFGGDLNLRDEE 172 (256)
T ss_dssp HSTTCEEEEEEECCCCGGG
T ss_pred ccCCCcEEEeccCCCCcch
Confidence 0133579999999966543
No 8
>4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B*
Probab=99.75 E-value=6.6e-17 Score=141.30 Aligned_cols=148 Identities=16% Similarity=0.252 Sum_probs=90.5
Q ss_pred eEEEEEEecCCCCCcc------cHHHHhccCCCCceEEEeecCccchhHHHHHHHHcCCCcEEEEEeeeeeEEEEEEecC
Q 038755 32 CICVVTWNMNGQVSYE------DLVELIGSNRKFDLLIVGLQEVPRNNIARLLKRAVAETHDLFAKAIMQSLQLFVFGPR 105 (321)
Q Consensus 32 ~v~v~TwNv~~~~~~~------~l~~~l~~~~~~Di~viglQE~~~~~~~~~l~~~l~~~y~~v~~~~l~gi~l~vf~~~ 105 (321)
++.|+||||++..... .+.++|. ...||| |||||+..... ..+...+...+... ..........++.+.
T Consensus 3 ~l~v~t~Ni~g~~~~~~~~r~~~i~~~i~-~~~pDI--i~LQEv~~~~~-~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~ 77 (250)
T 4f1h_A 3 KLSIISWNVDGLDTLNLADRARGLCSYLA-LYTPDV--VFLQELIPAYV-QYLKKRAVSYLFFE-GSDDGYFTGIMLRKS 77 (250)
T ss_dssp CEEEEEEECCTTCCTTHHHHHHHHHHHHH-HHCCSE--EEEEEECHHHH-HHHHHHCTTEEEEE-SCSSSSEEEEEEETT
T ss_pred eEEEEEEEeCCCCCcCHHHHHHHHHHHHH-HcCCCE--EEEEeCCHHHH-HHHHHhccCceeec-ccccccCceeEEeec
Confidence 4788999999765431 2556664 568998 88999875433 34555554433322 222222222233332
Q ss_pred CCcccccceeeeeEeecCccccccccCceEEEEEEEcCeEEEEEeecCCCCCccHHHHHHHHHHHHHhccCCCCCCCCCC
Q 038755 106 NSEPLVKELKLDKYSVGGFGGFIGRKKGAVAIRINYKGITMVFISCHLSAHARNVEERNSECRHILHSLFSKNQNPYAEP 185 (321)
Q Consensus 106 ~~~~~i~~~~~~~~~~gg~gg~~g~nKGaV~v~~~i~~~~i~fin~HL~a~~~~~~~R~~~~~~I~~~lf~~~~~~~~~~ 185 (321)
. .+.++ ...+.. ..... ..+++.+.+.+.+..+.++++||.+......+|..|+..+.+.+-.. ..
T Consensus 78 ~-~~~~~---~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~v~~~hl~~~~~~~~~r~~q~~~~~~~l~~~------~~ 143 (250)
T 4f1h_A 78 R-VKFLE---SEIICF---PTTQM-MRNLLIAQVTFSGQKLYLMTSHLESCKNQSQERTKQLRVVLQKIKEA------PE 143 (250)
T ss_dssp T-CEEEE---EEEEEC---TTCSS-CCEEEEEEEEETTEEEEEEECBCCCSGGGHHHHHHHHHHHHHHHHHS------CT
T ss_pred c-cccee---cccccc---cCccc-cceEEEEEEecCCcEEEEeccccccccccHHHHHHHHHHHHHHHHhc------CC
Confidence 2 21111 111211 11111 35677788889999999999999998888888999999888765221 12
Q ss_pred cceEEEecccccc
Q 038755 186 AQITVWLGDLNYR 198 (321)
Q Consensus 186 ~d~vf~~GDlNyR 198 (321)
...+|++||||..
T Consensus 144 ~~pvIl~GDfN~~ 156 (250)
T 4f1h_A 144 DAIVIFAGDTNLR 156 (250)
T ss_dssp TEEEEEEEECCCC
T ss_pred CCCEEEEEecCCC
Confidence 3469999999943
No 9
>3teb_A Endonuclease/exonuclease/phosphatase; PSI-biology, MCSG, midwest center for structural genomics; 2.99A {Leptotrichia buccalis c-1013-b}
Probab=99.73 E-value=6.9e-17 Score=145.08 Aligned_cols=151 Identities=21% Similarity=0.297 Sum_probs=93.5
Q ss_pred eEEEEEEecCCCCCc---cc---HHHHhccCCCCceEEEeecCccchh-------------HHHHHHHHcC----CCcEE
Q 038755 32 CICVVTWNMNGQVSY---ED---LVELIGSNRKFDLLIVGLQEVPRNN-------------IARLLKRAVA----ETHDL 88 (321)
Q Consensus 32 ~v~v~TwNv~~~~~~---~~---l~~~l~~~~~~Di~viglQE~~~~~-------------~~~~l~~~l~----~~y~~ 88 (321)
.+.|+||||.+.... .+ +.+++. ...||| |||||+.... +...+.+.+. ..|..
T Consensus 3 ~l~v~t~Ni~~~~~~~~~~~~~~i~~~i~-~~~~DI--i~LQEv~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~y~~ 79 (266)
T 3teb_A 3 AMKILTVNVHAWLEENQMEKIDILARTIA-EKQYDV--IAMQEVNQLMNNKIIFDDIREENYAWVLLETLQKYTDTDYYL 79 (266)
T ss_dssp CEEEEEEECCTTCSTTHHHHHHHHHHHHH-HHTCSE--EEEEEEEEETTSCEEETTEETTCHHHHHHHHHTTTCCSCCEE
T ss_pred ceEEEEEecccccCcchhHHHHHHHHHHH-hcCCCE--EEEEEccccccccccccccccccHHHHHHHHHHHhCCCCeEE
Confidence 367899999765432 12 344553 568999 8899995321 2222233332 24655
Q ss_pred EEEe-----eeeeEEEEEEecCCCcccccceeeeeEeecCccccccccCceEEEEEEEcCeEEEEEeecCCCCCccHHHH
Q 038755 89 FAKA-----IMQSLQLFVFGPRNSEPLVKELKLDKYSVGGFGGFIGRKKGAVAIRINYKGITMVFISCHLSAHARNVEER 163 (321)
Q Consensus 89 v~~~-----~l~gi~l~vf~~~~~~~~i~~~~~~~~~~gg~gg~~g~nKGaV~v~~~i~~~~i~fin~HL~a~~~~~~~R 163 (321)
+... ...+.++++|.|..+... ....... .....+ +. .++++.+++.+.+..+.++|+||.+.......|
T Consensus 80 ~~~~~~~~~~~~~~g~ailsr~~~~~~-~~~~~~~--~~~~~~-~~-~r~~~~~~~~~~~~~~~v~~~Hl~~~~~~~~~r 154 (266)
T 3teb_A 80 HWSNSHIGFGKYNEGVAVITRHKIKAE-DEFYCTF--AQSVRT-IS-ARRIVSITINYEGQDIEFYSCHMNLPNCETEDM 154 (266)
T ss_dssp EEEEEEECSTTEEEEEEEEESSCCSEE-EEEECSS--CCCTTC-TT-CCEEEEEEEEETTEEEEEEEEECCCTTCTTCCH
T ss_pred EEeccccCccccCCeEEEEECceecCc-eeEEeCC--CCCCCC-cc-cceEEEEEEEeCCeEEEEEEecCCCccCChHHH
Confidence 4211 233457778888665421 1111110 001112 23 488999999999999999999999875544578
Q ss_pred HHHHHHHHHhccCCCCCCCCCCcceEEEeccccccc
Q 038755 164 NSECRHILHSLFSKNQNPYAEPAQITVWLGDLNYRI 199 (321)
Q Consensus 164 ~~~~~~I~~~lf~~~~~~~~~~~d~vf~~GDlNyRi 199 (321)
..++..|.+.+-. ...+|++||||...
T Consensus 155 ~~q~~~l~~~~~~---------~~~~il~GDfN~~~ 181 (266)
T 3teb_A 155 GKNIQTILNRTQN---------SNLKILMGDFNTDA 181 (266)
T ss_dssp HHHHHHHHTSSCS---------CCEEEEEEECCCCT
T ss_pred HHHHHHHHHHHhc---------CCcEEEEeECCCCC
Confidence 8899888766421 45799999999654
No 10
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A
Probab=99.73 E-value=6.9e-17 Score=154.33 Aligned_cols=158 Identities=15% Similarity=0.220 Sum_probs=102.9
Q ss_pred cCceeEEEEEEecCCCCCcc------cHHHHhccCCCCceEEEeecCccchhHHHHHHHHcCCCcEEEEEeeeeeEEEEE
Q 038755 28 NSDLCICVVTWNMNGQVSYE------DLVELIGSNRKFDLLIVGLQEVPRNNIARLLKRAVAETHDLFAKAIMQSLQLFV 101 (321)
Q Consensus 28 ~~~l~v~v~TwNv~~~~~~~------~l~~~l~~~~~~Di~viglQE~~~~~~~~~l~~~l~~~y~~v~~~~l~gi~l~v 101 (321)
....++.|+||||+|..... .+.++|. ...||| |||||+...... .+...+. .|..+....-.+.+.+|
T Consensus 115 ~~~~~lkVlSWNI~Gl~~~~~~~R~~~I~~~I~-~~~PDI--V~LQEv~~~~~~-~l~~~~~-~y~~~~~~~~~~~G~aI 189 (362)
T 4gew_A 115 LKGFEVSVMSWNIDGLDGRSLLTRMKAVAHIVK-NVNPDI--LFLQEVVDRDLA-PIDKLQS-LYKIYYSNKGCQYYTAI 189 (362)
T ss_dssp TTTCEEEEEEEECCTTCCTTHHHHHHHHHHHHH-HHCCSE--EEEEEECSTTCH-HHHGGGG-TEEEEESSTTSSSEEEE
T ss_pred CCCCeEEEEEEEeCCCCCcCHHHHHHHHHHHHH-HcCCCE--EEEEcCChhHhH-HHHHhcC-CceEEeCCCCCCceEEE
Confidence 45678999999999875431 2566774 678999 889998654433 4444443 46655554555667788
Q ss_pred EecCCCcccccceeeeeEeecCccccccccCceEEEEEEEcCeEEEEEeecCCCCCccHHHHHHHHHHHHHhccCCCCCC
Q 038755 102 FGPRNSEPLVKELKLDKYSVGGFGGFIGRKKGAVAIRINYKGITMVFISCHLSAHARNVEERNSECRHILHSLFSKNQNP 181 (321)
Q Consensus 102 f~~~~~~~~i~~~~~~~~~~gg~gg~~g~nKGaV~v~~~i~~~~i~fin~HL~a~~~~~~~R~~~~~~I~~~lf~~~~~~ 181 (321)
|+|+.+. ......... .+. +..++++.+.+.+.+..|.++|+||.+......+|..++..+...+-...
T Consensus 190 lsk~~i~----~~~~~~~~~---~~~-~~~r~~l~~~i~~~g~~l~v~ntHL~s~~~~~~~R~~Q~~~l~~~~~~~~--- 258 (362)
T 4gew_A 190 LVSKMFD----VEKHDVIHF---QNS-GMYRTLQILEGSIGGLKVFLLNTHLESTREHRPQRCAQFGFCMDKVREII--- 258 (362)
T ss_dssp EEETTEE----EEEEEEEEC---TTC-SSCCEEEEEEEEETTEEEEEEEEECCCSGGGHHHHHHHHHHHHHHHHHHH---
T ss_pred EEeccCc----cccccccCC---CCC-cccceEEEEEEEECCEEEEEEEecCCccccchhHHHHHHHHHHHHhHhhh---
Confidence 8886432 111111211 111 12367888999999999999999999887777889888887765431000
Q ss_pred CCCCcceEEEeccccccccC
Q 038755 182 YAEPAQITVWLGDLNYRIQG 201 (321)
Q Consensus 182 ~~~~~d~vf~~GDlNyRi~~ 201 (321)
.......+|++||||.+-..
T Consensus 259 ~~~~~~pvIl~GDFN~~p~~ 278 (362)
T 4gew_A 259 AQNPGALVFFGGDLNLRDEE 278 (362)
T ss_dssp HHCTTCEEEEEEECCCCGGG
T ss_pred hcCCCCCeEEeecCCCCCcc
Confidence 00123469999999965443
No 11
>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3
Probab=99.67 E-value=1.5e-15 Score=139.51 Aligned_cols=158 Identities=18% Similarity=0.145 Sum_probs=91.3
Q ss_pred eEEEEEEecCCCCCc-------ccHHHHhc---cCCCCceEEEeecCccchhHHHHHHHHcCCCcEE----EEE------
Q 038755 32 CICVVTWNMNGQVSY-------EDLVELIG---SNRKFDLLIVGLQEVPRNNIARLLKRAVAETHDL----FAK------ 91 (321)
Q Consensus 32 ~v~v~TwNv~~~~~~-------~~l~~~l~---~~~~~Di~viglQE~~~~~~~~~l~~~l~~~y~~----v~~------ 91 (321)
.+.|+||||.+.... +.-.+++. ....||| |||||+........+.+.+...|.. +..
T Consensus 10 ~lrv~t~Ni~~~~~~~~~~~~~~~r~~~i~~~~~~~~~DI--v~LQEv~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 87 (301)
T 1zwx_A 10 NFKITSHNVYLFSRNIYPNWGQMHRADLIAQADYMKNNDV--VILNEAFDTSASHRLLNNLREMYPHQTPVIGRSKHGWD 87 (301)
T ss_dssp SCEEEEEEEEECCTTTSTTSCHHHHHHHHHTSGGGSSCSE--EEEEEECSHHHHHHHHHHTTTTCCEECCCTTSCSTTCS
T ss_pred ceEEEEEECccCCccccCCCCHHHHHHHHHHhhccCCCCE--EEEeccccHHHHHHHHHHHhhcCCccccccCCcccccc
Confidence 467899999875221 11122332 3468999 8899997654333333444433221 100
Q ss_pred --------eeeeeEEEEEEecCCCcccccceeeeeEeec-CccccccccCceEEEEEEEcCeEEEEEeecCCCCCc----
Q 038755 92 --------AIMQSLQLFVFGPRNSEPLVKELKLDKYSVG-GFGGFIGRKKGAVAIRINYKGITMVFISCHLSAHAR---- 158 (321)
Q Consensus 92 --------~~l~gi~l~vf~~~~~~~~i~~~~~~~~~~g-g~gg~~g~nKGaV~v~~~i~~~~i~fin~HL~a~~~---- 158 (321)
...+..+++|+.|..+.. ...-.+..+ |... .. ++|++.+.+.+.+..+.++|+||.+...
T Consensus 88 ~~~g~~~~~~~~~~G~ailSr~pi~~----~~~~~~~~~~~~~~-~~-~r~~~~~~~~~~g~~~~v~~~Hl~~~~~~~~~ 161 (301)
T 1zwx_A 88 KTEGNYSNFALEDGGVAVVSQWPIVE----KSQHIFQRGGGADR-LS-NKGFAYVKIMKNGKPYHIIGTHTQADDSLISK 161 (301)
T ss_dssp EEEC-----CCBCCCCEEEESSCEEE----EEEEECSCCCGGGG-GB-CCEEEEEEEEETTEEEEEEEEECCCCCTTSCH
T ss_pred ccccccccccccCCCEEEEecCCccc----ceEEEecCCCCccc-cc-CCCeEEEEEEECCEEEEEEEecCCCCCCCCCc
Confidence 011224566778766542 111011110 1111 12 5899999999999999999999998742
Q ss_pred --cHHHHHHHHHHHHHhccCCCCCCCCCCcceEEEeccccccccC
Q 038755 159 --NVEERNSECRHILHSLFSKNQNPYAEPAQITVWLGDLNYRIQG 201 (321)
Q Consensus 159 --~~~~R~~~~~~I~~~lf~~~~~~~~~~~d~vf~~GDlNyRi~~ 201 (321)
....|..|+..|.+.+-... ......+|++||||...+.
T Consensus 162 ~~~~~~R~~q~~~l~~~i~~~~----~~~~~pvIl~GDfN~~~~~ 202 (301)
T 1zwx_A 162 DTSRAIRAEQMQEIQTFIAKKN----IPKDEIIFIGGDLNVNYGT 202 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT----CCTTSEEEEEEECCCCTTS
T ss_pred cccHHHHHHHHHHHHHHHHHhC----CCCCCeEEEEeeCCCCCCc
Confidence 45678889888776542110 1123579999999965443
No 12
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} SCOP: d.151.1.1
Probab=99.66 E-value=4.7e-16 Score=139.72 Aligned_cols=148 Identities=14% Similarity=0.187 Sum_probs=92.4
Q ss_pred EEEEEEecCCCCCc-ccHHHHhccCCCCceEEEeecCccchhH---HHHHHHHcCCCcEEEEEeeeeeEEEEEEecCCCc
Q 038755 33 ICVVTWNMNGQVSY-EDLVELIGSNRKFDLLIVGLQEVPRNNI---ARLLKRAVAETHDLFAKAIMQSLQLFVFGPRNSE 108 (321)
Q Consensus 33 v~v~TwNv~~~~~~-~~l~~~l~~~~~~Di~viglQE~~~~~~---~~~l~~~l~~~y~~v~~~~l~gi~l~vf~~~~~~ 108 (321)
+.|+||||++.... +.+.+++. ...||| |||||+..... ...+. .. .|..+......+.++++|+|..+.
T Consensus 1 lrv~t~Nv~~~~~~~~~i~~~i~-~~~~Di--i~LQE~~~~~~~~~~~~l~-~~--gy~~~~~~~~~~~G~ailsr~~~~ 74 (268)
T 1ako_A 1 MKFVSFNINGLRARPHQLEAIVE-KHQPDV--IGLQETKVHDDMFPLEEVA-KL--GYNVFYHGQKGHYGVALLTKETPI 74 (268)
T ss_dssp CEEEEEECSCGGGCHHHHHHHHH-HHCCSE--EEEECCCCCGGGCCHHHHH-HT--TCEEEEEEETTEEEEEEEESSCCS
T ss_pred CEEEEEehhHHHHHHHHHHHHHH-HcCCCE--EEEEeccCChhhCCHhHhc-cC--CCcEEEeCCCCcceEEEEEecCcc
Confidence 36899999976432 34666774 568998 88999965432 12222 22 354443334445677888887654
Q ss_pred ccccceeeeeEeecCcccc-ccccCceEEEEEEEcCeEEEEEeecCCCCCc-----cHHHHHHHHHHHHHhccCCCCCCC
Q 038755 109 PLVKELKLDKYSVGGFGGF-IGRKKGAVAIRINYKGITMVFISCHLSAHAR-----NVEERNSECRHILHSLFSKNQNPY 182 (321)
Q Consensus 109 ~~i~~~~~~~~~~gg~gg~-~g~nKGaV~v~~~i~~~~i~fin~HL~a~~~-----~~~~R~~~~~~I~~~lf~~~~~~~ 182 (321)
. +. . ++.+. ....++++.+++.+.+..+.++|+||.+... ....|.+++..+.+.+-..
T Consensus 75 ~----~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Hl~~~~~~~~~~~~~~r~~~~~~l~~~~~~~----- 139 (268)
T 1ako_A 75 A----VR-----R-GFPGDDEEAQRRIIMAEIPSLLGNVTVINGYFPQGESRDHPIKFPAKAQFYQNLQNYLETE----- 139 (268)
T ss_dssp E----EE-----E-SSTTCCHHHHTTEEEEEEEETTEEEEEEEEECCCCCBTTCTTHHHHHHHHHHHHHHHHHHH-----
T ss_pred e----ee-----e-CCCCcccccCCCEEEEEEEcCCCeEEEEEEEecCCCCcccchhHHHHHHHHHHHHHHHHHh-----
Confidence 2 11 1 22210 0124788999999988899999999998763 2346777777766543110
Q ss_pred CCCcceEEEeccccccccC
Q 038755 183 AEPAQITVWLGDLNYRIQG 201 (321)
Q Consensus 183 ~~~~d~vf~~GDlNyRi~~ 201 (321)
......+|++||||...+.
T Consensus 140 ~~~~~~~Il~GDFN~~~~~ 158 (268)
T 1ako_A 140 LKRDNPVLIMGDMNISPTD 158 (268)
T ss_dssp CCTTSCEEEEEECCCCCSG
T ss_pred hhCCCCEEEEeECCCCCch
Confidence 0123469999999965443
No 13
>3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis}
Probab=99.63 E-value=6e-15 Score=132.37 Aligned_cols=151 Identities=19% Similarity=0.183 Sum_probs=92.0
Q ss_pred EEEEEEecCCCCCcc----------cHHHHhccCCCCceEEEeecCccchhHHHHHHHHcCCCcEEEEEee---eeeEEE
Q 038755 33 ICVVTWNMNGQVSYE----------DLVELIGSNRKFDLLIVGLQEVPRNNIARLLKRAVAETHDLFAKAI---MQSLQL 99 (321)
Q Consensus 33 v~v~TwNv~~~~~~~----------~l~~~l~~~~~~Di~viglQE~~~~~~~~~l~~~l~~~y~~v~~~~---l~gi~l 99 (321)
+.|+||||.+..+.. .+.+++. ...||| |||||+....... +.+.+ .|..+.... ..+.++
T Consensus 1 lrv~t~Ni~~~~~~~~~~~w~~r~~~i~~~i~-~~~~DI--v~LQEv~~~~~~~-l~~~l--~y~~~~~~~~~~~~~~g~ 74 (257)
T 3l1w_A 1 MKIATYNVRVDTEYDQDWQWSFRKEAVCQLIN-FHDWSL--CCIQEVRPNQVRD-LKAYT--TFTCLSAEREGDGQGEGL 74 (257)
T ss_dssp CEEEEEECCCCCGGGGGGSHHHHHHHHHHHHH-HHCCSE--EEEEEECHHHHHH-HHHHS--SSEEEEEESSSSSCSCEE
T ss_pred CEEEEEEeccCCCCccccChHHHHHHHHHHHH-HcCCCE--EEEeCCCHHHHHH-HHhcC--CCcEEEecccCCCCCceE
Confidence 468999998765431 1445553 458999 8899998654443 44455 465554332 356778
Q ss_pred EEEecCCCcccccceee--eeEe-ecCcc-ccccccCceEEEEEEEc--CeEEEEEeecCCCCCccHHHHHHHHHHHHHh
Q 038755 100 FVFGPRNSEPLVKELKL--DKYS-VGGFG-GFIGRKKGAVAIRINYK--GITMVFISCHLSAHARNVEERNSECRHILHS 173 (321)
Q Consensus 100 ~vf~~~~~~~~i~~~~~--~~~~-~gg~g-g~~g~nKGaV~v~~~i~--~~~i~fin~HL~a~~~~~~~R~~~~~~I~~~ 173 (321)
.+|.|++-.+.+..... +... ..+.+ +.. ..++++.+.+... +..+.++|+||.+.. ...|..|+..+.+.
T Consensus 75 ail~r~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~r~~~~~~~~~~~~g~~~~v~~~Hl~~~~--~~~r~~q~~~l~~~ 151 (257)
T 3l1w_A 75 AILYNEQKVQAIDTGYFWLSETPQQPSIHPEAG-CPRIALWGLFKETTQNTPFLVINVHLDHIS--AHARLAGMTVILEE 151 (257)
T ss_dssp EEEECTTTEEEEEEEEEESSSSTTSSCCCTTCS-SCCEEEEEEEEETTCSSCEEEEEEECCSSC--HHHHHHHHHHHHHH
T ss_pred EEEEEcceEEEEecCeEECcCCCCccccccccc-ccceeEEEEEEEcCCCCEEEEEEeCCCCCC--HHHHHHHHHHHHHH
Confidence 88888764433322111 0000 00111 111 2578888888874 689999999999864 35788888888776
Q ss_pred ccCCCCCCCCCCcceEEEecccccc
Q 038755 174 LFSKNQNPYAEPAQITVWLGDLNYR 198 (321)
Q Consensus 174 lf~~~~~~~~~~~d~vf~~GDlNyR 198 (321)
+-... ..+.+|++||||-.
T Consensus 152 i~~~~------~~~pvil~GDfN~~ 170 (257)
T 3l1w_A 152 LHDKI------AQYPTLLMGDFNAE 170 (257)
T ss_dssp THHHH------HHSCEEEEEECCCC
T ss_pred HHHHc------CCCCEEEEeeCCCC
Confidence 42100 01259999999953
No 14
>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482}
Probab=99.62 E-value=5.7e-15 Score=133.38 Aligned_cols=152 Identities=16% Similarity=0.177 Sum_probs=89.8
Q ss_pred eEEEEEEecCCCCCc-------cc---HHHHhccCCCCceEEEeecCccchhHHHHHHHHcCCCcEEEEEee----eeeE
Q 038755 32 CICVVTWNMNGQVSY-------ED---LVELIGSNRKFDLLIVGLQEVPRNNIARLLKRAVAETHDLFAKAI----MQSL 97 (321)
Q Consensus 32 ~v~v~TwNv~~~~~~-------~~---l~~~l~~~~~~Di~viglQE~~~~~~~~~l~~~l~~~y~~v~~~~----l~gi 97 (321)
.+.|+||||.+..+. .. +.+++. ...||| |||||+...... .|.+.+ ..|..+.... ..|-
T Consensus 3 ~l~v~t~Ni~~~~~~~~~~~~~~r~~~i~~~i~-~~~~DI--v~LQEv~~~~~~-~l~~~l-~~y~~~~~~~~~~~~~g~ 77 (267)
T 3g6s_A 3 DVRWATFNIRYDNPQDSLNNWQYRKDRVCQFIK-DHELDI--VGMQEVLHNQFQ-DLRAGL-PEYDGIGVGRDDGKTAGE 77 (267)
T ss_dssp EEEEEEEECCCCCGGGGGGSGGGTHHHHHHHHH-HTTCSE--EEEESBCHHHHH-HHHHHC-TTEEEECCCTTTSSSSSC
T ss_pred cEEEEEEEeccCCCCccccCHHHHHHHHHHHHH-HcCCCE--EEEecCCHHHHH-HHHHhc-cCCcEEEecCCCCCcCCc
Confidence 478999999876541 12 445563 568999 889999865433 345555 3465543211 1333
Q ss_pred EEEEEecCCCcccccceee--eeEe-e---cCccccccccCceEEEEEEE--cCeEEEEEeecCCCCCccHHHHHHHHHH
Q 038755 98 QLFVFGPRNSEPLVKELKL--DKYS-V---GGFGGFIGRKKGAVAIRINY--KGITMVFISCHLSAHARNVEERNSECRH 169 (321)
Q Consensus 98 ~l~vf~~~~~~~~i~~~~~--~~~~-~---gg~gg~~g~nKGaV~v~~~i--~~~~i~fin~HL~a~~~~~~~R~~~~~~ 169 (321)
++.||.+++-.+.+..-.. +... . .+.+.. .+++++.+.+.. .+..+.++|+||.+.. ...|.+++..
T Consensus 78 ~~ail~~~s~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~R~~~~~~~~~~~~~~~~~v~~~Hl~~~~--~~~R~~q~~~ 153 (267)
T 3g6s_A 78 YAPLFYRKDKYEVLDSNTFWLAENPDSVGMMGWDAV--CVRIATWAKFKDKATGKIFMAVNTHFDHVG--EEARRQSALL 153 (267)
T ss_dssp BCCEEEETTTEEEEEEEEEESSSCTTSTTCCCTTCS--SCCEEEEEEEEETTTCCEEEEEEEECCSSC--HHHHHHHHHH
T ss_pred eeEEEEEccceEEEecccEecCCCCCcccccccccc--CcceEEEEEEEEcCCCCEEEEEEeCCCCCC--HHHHHHHHHH
Confidence 4667766554433222111 0000 0 011111 147788888885 5789999999999754 4578888777
Q ss_pred HHHhccCCCCCCCCCCcceEEEecccccc
Q 038755 170 ILHSLFSKNQNPYAEPAQITVWLGDLNYR 198 (321)
Q Consensus 170 I~~~lf~~~~~~~~~~~d~vf~~GDlNyR 198 (321)
+.+.+-... ....+|++||||-.
T Consensus 154 l~~~l~~~~------~~~pvIl~GDfN~~ 176 (267)
T 3g6s_A 154 IIRKIKEIV------GERPAVVTGDFNVT 176 (267)
T ss_dssp HHHHHHHHT------TTSCEEEEEECSSC
T ss_pred HHHHHHHhc------CCCCEEEEeECCCC
Confidence 766542110 12459999999953
No 15
>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus} PDB: 3i46_A 3i48_A 3i5v_A* 3k55_A
Probab=99.60 E-value=1.4e-14 Score=135.43 Aligned_cols=159 Identities=18% Similarity=0.182 Sum_probs=93.7
Q ss_pred ceeEEEEEEecCCCCC----c---ccHHHHhc---cCCCCceEEEeecCccchhHHHHHHHHcCCCcEEEE----Ee---
Q 038755 30 DLCICVVTWNMNGQVS----Y---EDLVELIG---SNRKFDLLIVGLQEVPRNNIARLLKRAVAETHDLFA----KA--- 92 (321)
Q Consensus 30 ~l~v~v~TwNv~~~~~----~---~~l~~~l~---~~~~~Di~viglQE~~~~~~~~~l~~~l~~~y~~v~----~~--- 92 (321)
.-.+.|+||||.+... . ..-.+++. ....||| |||||+........+.+.+.+.|.... ..
T Consensus 27 ~~~lrV~T~Ni~~~~~~~~~~~~~~~R~~~i~~~~~~~~pDI--v~LQEv~~~~~~~~l~~~L~~~~py~~~~~g~~~~~ 104 (317)
T 3i41_A 27 DTDLKLVSHNVYMLSTVLYPNWGQYKRADLIGQSSYIKNNDV--VIFNEAFDNGASDKLLSNVKKEYPYQTPVLGRSQSG 104 (317)
T ss_dssp -CCCCEEEEEEEECCTTTSTTSCHHHHHHHHHHCSTTSSCSE--EEEEEECSHHHHHHHHHHTTTTCCEECCCTTSCSTT
T ss_pred CCceEEEEEecccCccccCCCccHHHHHHHHHHHhhccCCCE--EEEEeeccHHHHHHHHHHHHHhCCcccccCCccccC
Confidence 4457889999987532 1 11112221 3468999 889999765433344445554333210 00
Q ss_pred -----------eeeeEEEEEEecCCCcccccceeeeeEee-cCccccccccCceEEEEEEEcCeEEEEEeecCCCCCc--
Q 038755 93 -----------IMQSLQLFVFGPRNSEPLVKELKLDKYSV-GGFGGFIGRKKGAVAIRINYKGITMVFISCHLSAHAR-- 158 (321)
Q Consensus 93 -----------~l~gi~l~vf~~~~~~~~i~~~~~~~~~~-gg~gg~~g~nKGaV~v~~~i~~~~i~fin~HL~a~~~-- 158 (321)
.+.+-++++++|..+.... .+. +.. .+... .. +||++.+.+.+.+..+.++|+||.+...
T Consensus 105 ~~~~~~~y~~~~~~~~G~~ilSr~Pi~~~~-~~~---~~~~~~~d~-~~-~r~~~~~~i~~~g~~v~v~~~Hl~~~~~~~ 178 (317)
T 3i41_A 105 WDKTEGSYSSTVAEDGGVAIVSKYPIKEKI-QHV---FKSGCGFDN-DS-NKGFVYTKIEKNGKNVHVIGTHTQSEDSRC 178 (317)
T ss_dssp CSEEEESCCSSCSBCCCCEEEESSCEEEEE-EEE---CSCCCSSGG-GB-CCEEEEEEEEETTEEEEEEEEECCCCCSSS
T ss_pred ccCcccccccccccCCccEEEeCCCCccce-eEE---CCCCCCccc-cc-CcceEEEEEEECCEEEEEEEECCCCCCCCC
Confidence 0111366778887654211 111 111 11111 23 6899999999999999999999998652
Q ss_pred ----cHHHHHHHHHHHHHhccCCCCCCCCCCcceEEEecccccccc
Q 038755 159 ----NVEERNSECRHILHSLFSKNQNPYAEPAQITVWLGDLNYRIQ 200 (321)
Q Consensus 159 ----~~~~R~~~~~~I~~~lf~~~~~~~~~~~d~vf~~GDlNyRi~ 200 (321)
....|..|+..|.+.+-... ......+|++||||-...
T Consensus 179 ~~~~~~~~R~~q~~~l~~~i~~~~----~~~~~pvIl~GDfN~~~~ 220 (317)
T 3i41_A 179 GAGHDRKIRAEQMKEISDFVKKKN----IPKDETVYIGGDLNVNKG 220 (317)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHT----CCTTSCEEEEEECCCCTT
T ss_pred cccccHHHHHHHHHHHHHHHHHhc----cCCCCeEEEEeECCCCCC
Confidence 36789999988877652210 012346999999995543
No 16
>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X
Probab=99.58 E-value=4.2e-14 Score=129.86 Aligned_cols=158 Identities=19% Similarity=0.160 Sum_probs=90.4
Q ss_pred ceeEEEEEEecCCCCCc-------ccHHHHhc---cCCCCceEEEeecCccchhHHHHHHHHcCCCcEEE----E-----
Q 038755 30 DLCICVVTWNMNGQVSY-------EDLVELIG---SNRKFDLLIVGLQEVPRNNIARLLKRAVAETHDLF----A----- 90 (321)
Q Consensus 30 ~l~v~v~TwNv~~~~~~-------~~l~~~l~---~~~~~Di~viglQE~~~~~~~~~l~~~l~~~y~~v----~----- 90 (321)
.-.+.|+||||.+.... +.-.+++. ....||| |||||+........+.+.+...|... +
T Consensus 7 ~~~lrv~t~Ni~~~~~~~~~~~~~~~r~~~~~~~~~~~~~DI--v~LQEv~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 84 (306)
T 2ddr_A 7 NDTLKVMTHNVYMLSTNLYPNWGQTERADLIGAADYIKNQDV--VILNEVFDNSASDRLLGNLKKEYPNQTAVLGRSSGS 84 (306)
T ss_dssp CCEEEEEEEEEEECCTTTCTTSCHHHHHHHHHHCSTTCSCSE--EEEEEECCHHHHHHHHHHHTTTCCEECCCTTSCCST
T ss_pred CCEEEEEEEECccCcccccCCCCHHHHHHHHHHHhhccCCCE--EEEEeecCHHHHHHHHHHHhhhCCceeeccCccccc
Confidence 44688999999875421 11112221 3468999 88999976543333443343333211 0
Q ss_pred ------E----eeeeeEEEEEEecCCCcccccceeeeeEeec-CccccccccCceEEEEEEEcCeEEEEEeecCCCCC--
Q 038755 91 ------K----AIMQSLQLFVFGPRNSEPLVKELKLDKYSVG-GFGGFIGRKKGAVAIRINYKGITMVFISCHLSAHA-- 157 (321)
Q Consensus 91 ------~----~~l~gi~l~vf~~~~~~~~i~~~~~~~~~~g-g~gg~~g~nKGaV~v~~~i~~~~i~fin~HL~a~~-- 157 (321)
. ......++++++|.++.. ........+ |.... . .+|++.+.+.+.+..+.++|+||.+..
T Consensus 85 ~~~~~~~~~~~~~~~~~G~ailSr~pi~~----~~~~~~~~~~~~~~~-~-~r~~~~~~i~~~g~~~~v~~~Hl~~~~~~ 158 (306)
T 2ddr_A 85 EWDKTLGNYSSSTPEDGGVAIVSKWPIAE----KIQYVFAKGCGPDNL-S-NKGFVYTKIKKNDRFVHVIGTHLQAEDSM 158 (306)
T ss_dssp TSSEEEESCCTTCSSCCCCEEEESSCEEE----EEEEECSCCC----C-C-CCEEEEEEEEETTEEEEEEEEECCCC---
T ss_pred ccccccccccccCccCCeEEEEECCCccc----ccEEEcCCCCCcchh-c-CCCeEEEEEEeCCEEEEEEEECCCCCCCC
Confidence 0 001234566778765432 111011110 11111 2 589999999999999999999999874
Q ss_pred ----ccHHHHHHHHHHHHHhccCCCCCCCCCCcceEEEeccccccc
Q 038755 158 ----RNVEERNSECRHILHSLFSKNQNPYAEPAQITVWLGDLNYRI 199 (321)
Q Consensus 158 ----~~~~~R~~~~~~I~~~lf~~~~~~~~~~~d~vf~~GDlNyRi 199 (321)
.....|..|+..|.+.+-... ......+|++||||-..
T Consensus 159 ~~~~~~~~~R~~q~~~l~~~i~~~~----~~~~~pvil~GDfN~~~ 200 (306)
T 2ddr_A 159 CGKTSPASVRTNQLKEIQDFIKNKN----IPNNEYVLIGGDMNVNK 200 (306)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHT----CCTTSCEEEEEECCCCC
T ss_pred cccccCHHHHHHHHHHHHHHHHHhc----CCCCCEEEEEeeCCCCc
Confidence 245678888888776542110 01224699999999665
No 17
>3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein; structural genomics, PSI-2, protein structure initiative; HET: MSE PEG; 1.90A {Bacteroides thetaiotaomicron}
Probab=99.57 E-value=5.9e-14 Score=129.52 Aligned_cols=156 Identities=13% Similarity=0.173 Sum_probs=90.5
Q ss_pred ceeEEEEEEecCCCCCc------------ccHHHHhccCCCCceEEEeecCccchhHHHHHHHHcCCCcEEEEEee----
Q 038755 30 DLCICVVTWNMNGQVSY------------EDLVELIGSNRKFDLLIVGLQEVPRNNIARLLKRAVAETHDLFAKAI---- 93 (321)
Q Consensus 30 ~l~v~v~TwNv~~~~~~------------~~l~~~l~~~~~~Di~viglQE~~~~~~~~~l~~~l~~~y~~v~~~~---- 93 (321)
.-.+.|+||||....+. +.+.++|. ...||| |||||+.... ...|.+.++ .|..+....
T Consensus 4 ~~~lrV~t~Ni~~~~~~~~~~~~~w~~r~~~i~~~i~-~~~~DI--v~LQEv~~~~-~~~l~~~l~-~y~~~~~~~~~g~ 78 (298)
T 3mpr_A 4 PTSLTVASYNLRNANGSDSARGDGWGQRYPVIAQMVQ-YHDFDI--FGTQECFLHQ-LKDMKEALP-GYDYIGVGRDDGK 78 (298)
T ss_dssp CEEEEEEEEECCCCCHHHHHHTCCHHHHHHHHHHHHH-HTTCSE--EEEESBCHHH-HHHHHHHST-TEEEECCCTTTSS
T ss_pred CCcEEEEEEEeccCCCCCcccccCHHHHHHHHHHHHH-HcCCCE--EEEeCCCHHH-HHHHHHhCC-CCcEEEEecCCCC
Confidence 44688999999765431 12445553 568999 8899998543 334555563 466553322
Q ss_pred eeeEEEEEEecCCCcccccceee--eeE--ee-cCccccccccCceEEEEEE--EcCeEEEEEeecCCCCCccHHHHHHH
Q 038755 94 MQSLQLFVFGPRNSEPLVKELKL--DKY--SV-GGFGGFIGRKKGAVAIRIN--YKGITMVFISCHLSAHARNVEERNSE 166 (321)
Q Consensus 94 l~gi~l~vf~~~~~~~~i~~~~~--~~~--~~-gg~gg~~g~nKGaV~v~~~--i~~~~i~fin~HL~a~~~~~~~R~~~ 166 (321)
..|....||.+++-.+.+..-.. +.. .. .|.+.. .+++++.+.|. ..+..|.++|+||.+.. ...|.++
T Consensus 79 ~~g~~~aily~~sr~~i~~~~~~~l~~~p~~~~~~~~~~--~~R~~~~~~~~~~~~g~~~~v~~~Hl~~~~--~~~R~~q 154 (298)
T 3mpr_A 79 DKGEHSAIFYRTDKFDIVEKGDFWLSETPDVPSKGWDAV--LPRICSWGHFKCKDTGFEFLFFNLHMDHIG--KKARVES 154 (298)
T ss_dssp SSSCBCCEEEETTTEEEEEEEEEESSSSTTSSCCCTTCS--SCCEEEEEEEEETTTCCEEEEEEEECCSSC--HHHHHHH
T ss_pred CCCceeEEEEecCceEEEeccEEEccCCCCccCcccccc--cCceeEEEEEEEcCCCCEEEEEEecCCCCC--HHHHHHH
Confidence 12334666655543332221110 000 00 011111 14778888888 46789999999998643 4578888
Q ss_pred HHHHHHhccCCCCCCCCCCcceEEEecccccc
Q 038755 167 CRHILHSLFSKNQNPYAEPAQITVWLGDLNYR 198 (321)
Q Consensus 167 ~~~I~~~lf~~~~~~~~~~~d~vf~~GDlNyR 198 (321)
+..|.+.+-.... .....+|++||||-.
T Consensus 155 ~~~l~~~i~~~~~----~~~~pvIl~GDfN~~ 182 (298)
T 3mpr_A 155 AFLVQEKMKELGR----GKNLPAILTGDFNVD 182 (298)
T ss_dssp HHHHHHHHHHTTT----TSCCCEEEEEECSSC
T ss_pred HHHHHHHHHHHhc----CCCCcEEEEEeCCCC
Confidence 8887766421110 023459999999944
No 18
>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis}
Probab=99.53 E-value=1.9e-14 Score=128.36 Aligned_cols=145 Identities=12% Similarity=0.124 Sum_probs=80.4
Q ss_pred EEEEEEecCCCCC-cccHHHHhccCCCCceEEEeecCccchhHHHHHHHHc-CCCcEEEEEeeeeeEEEEEEecCCCccc
Q 038755 33 ICVVTWNMNGQVS-YEDLVELIGSNRKFDLLIVGLQEVPRNNIARLLKRAV-AETHDLFAKAIMQSLQLFVFGPRNSEPL 110 (321)
Q Consensus 33 v~v~TwNv~~~~~-~~~l~~~l~~~~~~Di~viglQE~~~~~~~~~l~~~l-~~~y~~v~~~~l~gi~l~vf~~~~~~~~ 110 (321)
+.|+||||++... .+.+.+++. ...||| |||||+...... ...+.+ ...|..+....-...+++|++|.++..
T Consensus 1 lrv~t~Nv~~~~~~~~~i~~~i~-~~~~DI--v~LQE~~~~~~~-~~~~~~~~~gy~~~~~~~~~~~G~ailsr~~~~~- 75 (256)
T 2jc4_A 1 MKITTWNVNSLNVRLPQVQNLLA-DNPPDI--LVLQELKLDQDK-FPAAALQMMGWHCVWSGQKTYNGVAIVSRSVPQD- 75 (256)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHH-SSCCSE--EEEECCCSCGGG-SCHHHHHTTTCEEEEECCSSSCCEEEEESSCCEE-
T ss_pred CEEEEEEcCCcHHHHHHHHHHHH-hcCCCE--EEEEeeccchhc-CCHhHHhhcCCeEEECCCCcceEEEEEECCChHH-
Confidence 3689999997532 234566774 678999 889999754321 111112 234655433233334677888876431
Q ss_pred ccceeeeeEeecCccccc-cccCceEEEEEEEcCeEEEEEeecCCCCCc----cHHHHHHHHHHHHHhccCCCCCCCCCC
Q 038755 111 VKELKLDKYSVGGFGGFI-GRKKGAVAIRINYKGITMVFISCHLSAHAR----NVEERNSECRHILHSLFSKNQNPYAEP 185 (321)
Q Consensus 111 i~~~~~~~~~~gg~gg~~-g~nKGaV~v~~~i~~~~i~fin~HL~a~~~----~~~~R~~~~~~I~~~lf~~~~~~~~~~ 185 (321)
+. . ++.+.. ....+++.+ .+. .+.++|+|+++... ....|.+++..+.+.+-.. ...
T Consensus 76 ---~~-----~-~~~~~~~~~~~~~~~~--~~~--~~~v~~~h~~~~~~~~~~~~~~r~~~~~~l~~~~~~~-----~~~ 137 (256)
T 2jc4_A 76 ---VH-----F-GLPALPDDPQRRVIAA--TVS--GVRVINVYCVNGEALDSPKFKYKEQWFAALTEFVRDE-----MTR 137 (256)
T ss_dssp ---EE-----E-SCTTSTTCCSCCEEEE--EET--TEEEEEEECCCCCSTTSHHHHHHHHHHHHHHHHHHHH-----HTT
T ss_pred ---he-----e-cCCCCccCCcCcEEEE--EeC--CEEEEEEEecCCCCCCcHhHHHHHHHHHHHHHHHHHH-----hcC
Confidence 11 1 122110 112234433 443 69999999988754 3445666665554433110 012
Q ss_pred cceEEEecccccccc
Q 038755 186 AQITVWLGDLNYRIQ 200 (321)
Q Consensus 186 ~d~vf~~GDlNyRi~ 200 (321)
...+|++||||...+
T Consensus 138 ~~~~il~GDFN~~~~ 152 (256)
T 2jc4_A 138 HGKLVLLGDFNIAPA 152 (256)
T ss_dssp CSSEEEEEECCCCCS
T ss_pred CCCEEEEeECCCCCc
Confidence 245999999996554
No 19
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A
Probab=99.46 E-value=4.2e-13 Score=118.06 Aligned_cols=140 Identities=14% Similarity=0.120 Sum_probs=80.3
Q ss_pred eeEEEEEEecCCCCCc---ccHHHHhccCCCCceEEEeecCccchhHHHHHHHHcCCCcEE--EEEeeeeeEEEEEEecC
Q 038755 31 LCICVVTWNMNGQVSY---EDLVELIGSNRKFDLLIVGLQEVPRNNIARLLKRAVAETHDL--FAKAIMQSLQLFVFGPR 105 (321)
Q Consensus 31 l~v~v~TwNv~~~~~~---~~l~~~l~~~~~~Di~viglQE~~~~~~~~~l~~~l~~~y~~--v~~~~l~gi~l~vf~~~ 105 (321)
..+.|+||||+|.... +.+.+++. ...||| |||||+...... +.......|.. .....-.+-++++|+|+
T Consensus 6 ~~lri~t~Nv~g~~~~~~~~~~~~~i~-~~~~DI--v~LQE~~~~~~~--~~~l~~~~y~~~~~~~~~~~~~Gvail~r~ 80 (238)
T 1vyb_A 6 SHITILTLNINGLNSAIKRHRLASWIK-SQDPSV--CCIQETHLTCRD--THRLKIKGWRKIYQANGKQKKAGVAILVSD 80 (238)
T ss_dssp CCEEEEEEECSCCCSHHHHHHHHHHHH-HHCCSE--EEEECCCCCTTS--GGGCCCTTCCEEEEECCSSSSCCEEEEECT
T ss_pred CcceEEEEecccCCchhhHHHHHHHHH-HcCCCE--EEEecccCCCCC--chhHhhCCCCeEEEccCCCCCceEEEEEeC
Confidence 3578999999987654 34666774 568999 889998543210 11111123432 22211122367788887
Q ss_pred CCcccccceeeeeEeecCccccccccCceEEEEEEEcCeEEEEEeecCCCCCccHHHHHHHHHHHHHhccCCCCCCCCCC
Q 038755 106 NSEPLVKELKLDKYSVGGFGGFIGRKKGAVAIRINYKGITMVFISCHLSAHARNVEERNSECRHILHSLFSKNQNPYAEP 185 (321)
Q Consensus 106 ~~~~~i~~~~~~~~~~gg~gg~~g~nKGaV~v~~~i~~~~i~fin~HL~a~~~~~~~R~~~~~~I~~~lf~~~~~~~~~~ 185 (321)
++...+.. ..... ..-.+.+.+.+.+..+.++|+|+++... .| .+..+.+.+-.. .
T Consensus 81 ~~~~~~~~-----~~~~~-------~~r~i~~~~~~~~~~~~v~~~y~p~~~~---~~--~~~~l~~~l~~~-------~ 136 (238)
T 1vyb_A 81 KTDFKPTK-----IKRDK-------EGHYIMVKGSIQQEELTILNIYAPNTGA---PR--FIKQVLSDLQRD-------L 136 (238)
T ss_dssp TCCCEEEE-----EEECT-------TSSEEEEEEEETTEEEEEEEEECCSSSH---HH--HHHHHHHHTTTT-------C
T ss_pred CCCccccc-----eeEcC-------CCcEEEEEEEeCCCcEEEEEEecCCCCc---HH--HHHHHHHHHHhc-------c
Confidence 64321111 11110 1225667788888999999999997653 12 233444443211 1
Q ss_pred cceEEEeccccccc
Q 038755 186 AQITVWLGDLNYRI 199 (321)
Q Consensus 186 ~d~vf~~GDlNyRi 199 (321)
...++++||||-..
T Consensus 137 ~~~~Il~GDFN~~~ 150 (238)
T 1vyb_A 137 DSHTLIMGDFNTPL 150 (238)
T ss_dssp CTTEEEEEECSSCS
T ss_pred CCCEEEEccCCCCC
Confidence 24599999999743
No 20
>3g91_A MTH0212, exodeoxyribonuclease; double-strand specific 3'-5' exonuclease, AP endonuclease; HET: PG4; 1.23A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fzi_A 3g0a_A 3g1k_A 3g2c_A 3g3c_A* 3g3y_A* 3g4t_A* 3g00_A 3g0r_A* 3g2d_A* 3g38_A 3g8v_A* 3ga6_A
Probab=99.44 E-value=6.1e-13 Score=120.11 Aligned_cols=146 Identities=15% Similarity=0.208 Sum_probs=77.1
Q ss_pred eEEEEEEecCCCCCc-c-cHHHHhccCCCCceEEEeecCccchhHHHHHHHH-cCCCcEEEEEee--eeeEEEEEEecCC
Q 038755 32 CICVVTWNMNGQVSY-E-DLVELIGSNRKFDLLIVGLQEVPRNNIARLLKRA-VAETHDLFAKAI--MQSLQLFVFGPRN 106 (321)
Q Consensus 32 ~v~v~TwNv~~~~~~-~-~l~~~l~~~~~~Di~viglQE~~~~~~~~~l~~~-l~~~y~~v~~~~--l~gi~l~vf~~~~ 106 (321)
.+.|+||||+|.... . .+.+++. ...||| |||||...... .+.... ....|..+.... -+.-+.++|+|..
T Consensus 3 ~l~i~s~Nv~g~~~~~~~~l~~~i~-~~~~DI--v~LQEt~~~~~-~~~~~~~~~~gy~~~~~~~~~~~~~Gvail~k~~ 78 (265)
T 3g91_A 3 VLKIISWNVNGLRAVHRKGFLKWFM-EEKPDI--LCLQEIKAAPE-QLPRKLRHVEGYRSFFTPAERKGYSGVAMYTKVP 78 (265)
T ss_dssp EEEEEEEECSCHHHHHHHTHHHHHH-HHCCSE--EEEECCCSCGG-GSCHHHHCCTTCEEEEECBSSTTSCCEEEEESSC
T ss_pred ccEEEEEEcCCchhhhhhhHHHHHH-hcCCCE--EEEEecccccc-ccChhhhcccCCcEEEccCCCCCcCEEEEEEecC
Confidence 367899999986542 2 4777884 568999 88999864321 111111 124565433221 2212456677865
Q ss_pred CcccccceeeeeEeecCcccc-ccccCceEEEEEEEcCeEEEEEeecCCCCCcc---HHHHHHHHHHHHHhccCCCCCCC
Q 038755 107 SEPLVKELKLDKYSVGGFGGF-IGRKKGAVAIRINYKGITMVFISCHLSAHARN---VEERNSECRHILHSLFSKNQNPY 182 (321)
Q Consensus 107 ~~~~i~~~~~~~~~~gg~gg~-~g~nKGaV~v~~~i~~~~i~fin~HL~a~~~~---~~~R~~~~~~I~~~lf~~~~~~~ 182 (321)
.... .. +++.. .. ..|.+ +.+. ...+.++|+|++.+... ...|.+.+..+.+.+-..
T Consensus 79 ~~~~---------~~-~~~~~~~d-~~gr~-i~~~--~~~~~i~~vy~p~~~~~~~~~~~r~~~~~~l~~~~~~~----- 139 (265)
T 3g91_A 79 PSSL---------RE-GFGVERFD-TEGRI-QIAD--FDDFLLYNIYFPNGAMSEERLKYKLEFYDAFLEDVNRE----- 139 (265)
T ss_dssp CSEE---------EC-CCSCHHHH-SBSCE-EEEE--CSSCEEEEEECCCCTTCHHHHHHHHHHHHHHHHHHHHH-----
T ss_pred hHHh---------cc-CCCCcccC-CcCCE-EEEE--eCCEEEEEEEecCCCCCchhHHHHHHHHHHHHHHHHHH-----
Confidence 4321 11 22211 11 23332 2222 34788999999887654 233555554444332100
Q ss_pred CCCcceEEEecccccccc
Q 038755 183 AEPAQITVWLGDLNYRIQ 200 (321)
Q Consensus 183 ~~~~d~vf~~GDlNyRi~ 200 (321)
......++++||||-..+
T Consensus 140 ~~~~~~~ii~GDfN~~~~ 157 (265)
T 3g91_A 140 RDSGRNVIICGDFNTAHR 157 (265)
T ss_dssp HHTTCCEEEEEECCCCCS
T ss_pred HcCCCCEEEECccccCCc
Confidence 001245999999995543
No 21
>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus}
Probab=99.44 E-value=2.1e-12 Score=115.37 Aligned_cols=141 Identities=13% Similarity=0.155 Sum_probs=76.5
Q ss_pred EEEEEEecCCCCCc-ccHHHHhccCCCCceEEEeecCccchh--HH-HHHHHHcCCCcEEEEEeeeeeEEEEEEecCCCc
Q 038755 33 ICVVTWNMNGQVSY-EDLVELIGSNRKFDLLIVGLQEVPRNN--IA-RLLKRAVAETHDLFAKAIMQSLQLFVFGPRNSE 108 (321)
Q Consensus 33 v~v~TwNv~~~~~~-~~l~~~l~~~~~~Di~viglQE~~~~~--~~-~~l~~~l~~~y~~v~~~~l~gi~l~vf~~~~~~ 108 (321)
+.|+||||+|.... +.+.+++. ...||| |||||+.... .. ..+ . ...|..+....-+.-+++||+|..+.
T Consensus 2 lrv~t~Nv~g~~~~~~~i~~~i~-~~~~Di--i~lQE~~~~~~~~~~~~~-~--~~gy~~~~~~~~~~~G~ailsr~~~~ 75 (257)
T 2voa_A 2 LKIATFNVNSIRSRLHIVIPWLK-ENKPDI--LCMQETKVENRKFPEADF-H--RIGYHVVFSGSKGRNGVAIASLEEPE 75 (257)
T ss_dssp EEEEEEECSCGGGTHHHHHHHHH-HHCCSE--EEEECCCCCGGGCCHHHH-H--TTTCEEEEEEETTEEEEEEEESSCCE
T ss_pred eEEEEEecCChHHHHHHHHHHHh-hcCCCE--EEEEEeecchhhcCHHHh-h--hCCCcEEEcCCCCccEEEEEEccChH
Confidence 57899999976432 34666774 568999 8899996432 11 111 1 23454443223333567888887653
Q ss_pred ccccceeeeeEeecCcccc-ccccCceEEEEEEEcCeEEEEEeecCCCCCc----cHHHHHHHHHHHHHhccCCCCCCCC
Q 038755 109 PLVKELKLDKYSVGGFGGF-IGRKKGAVAIRINYKGITMVFISCHLSAHAR----NVEERNSECRHILHSLFSKNQNPYA 183 (321)
Q Consensus 109 ~~i~~~~~~~~~~gg~gg~-~g~nKGaV~v~~~i~~~~i~fin~HL~a~~~----~~~~R~~~~~~I~~~lf~~~~~~~~ 183 (321)
. +. . ++.+. .. ....+.+ .+. .+.++|+|+++... ....|.+.+..+.+.+-.. .
T Consensus 76 ~----~~-----~-~~~~~~~~-~~r~l~~--~~~--~~~v~~~h~p~~~~~~~~~~~~r~~~~~~l~~~~~~~-----~ 135 (257)
T 2voa_A 76 D----VS-----F-GLDSEPKD-EDRLIRA--KIA--GIDVINTYVPQGFKIDSEKYQYKLQWLERLYHYLQKT-----V 135 (257)
T ss_dssp E----EE-----E-SCSSSSCC-GGGEEEE--EET--TEEEEEEECCCCSCTTSHHHHHHHHHHHHHHHHHHHH-----C
T ss_pred H----he-----e-cCCCCccc-cCcEEEE--EEC--CEEEEEEEeCCCCCCCcHHHHHHHHHHHHHHHHHHHH-----h
Confidence 1 11 1 12111 00 1113333 343 68999999987653 2334544455554332110 0
Q ss_pred CCcceEEEeccccccc
Q 038755 184 EPAQITVWLGDLNYRI 199 (321)
Q Consensus 184 ~~~d~vf~~GDlNyRi 199 (321)
.....++++||||-..
T Consensus 136 ~~~~p~Il~GDFN~~~ 151 (257)
T 2voa_A 136 DFRSFAVWCGDMNVAP 151 (257)
T ss_dssp CTTSCEEEEEECSCCC
T ss_pred cCCCCEEEEeeCCCCC
Confidence 1224599999999543
No 22
>2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis}
Probab=99.41 E-value=3.5e-13 Score=120.22 Aligned_cols=144 Identities=18% Similarity=0.191 Sum_probs=79.2
Q ss_pred EEEEEEecCCCCCc-c-cHHHHhccCCCCceEEEeecCccchhH--HHHHHHHcCCCcEEEEE--eeeeeEEEEEEecCC
Q 038755 33 ICVVTWNMNGQVSY-E-DLVELIGSNRKFDLLIVGLQEVPRNNI--ARLLKRAVAETHDLFAK--AIMQSLQLFVFGPRN 106 (321)
Q Consensus 33 v~v~TwNv~~~~~~-~-~l~~~l~~~~~~Di~viglQE~~~~~~--~~~l~~~l~~~y~~v~~--~~l~gi~l~vf~~~~ 106 (321)
+.|+||||++.... . .+.+++. ...||| |||||+..... ...+... ..|..+.. ...+.-+++||+|.+
T Consensus 2 l~v~t~Ni~~~~~~~~~~i~~~i~-~~~~DI--i~LQE~~~~~~~~~~~l~~~--~gy~~~~~~~~~~~~~G~ailsr~~ 76 (259)
T 2jc5_A 2 LKIISANVNGIRSAYKKGFYEYIA-ASGADI--VCVQELKAQEADLSADMKNP--HGMHGHWHCAEKRGYSGVAVYSKRK 76 (259)
T ss_dssp EEEEEEECSSHHHHHHTTHHHHHH-HTTCSE--EEEECCCCCGGGCCHHHHSG--GGCEEEEECCSSTTCCCEEEEESSC
T ss_pred cEEEEEeeccHHHHHHhHHHHHHH-hcCCCE--EEEEEecchhhccChhhccc--cCCeEEEeccCCCCcceEEEEEecC
Confidence 67999999975432 2 3777774 578999 88999975431 1122221 23544332 122234577888886
Q ss_pred CcccccceeeeeEeecCccc-cccccCceEEEEEEEcCeEEEEEeecCCCCCccH---HHHHHHHHHHHHhccCCCCCCC
Q 038755 107 SEPLVKELKLDKYSVGGFGG-FIGRKKGAVAIRINYKGITMVFISCHLSAHARNV---EERNSECRHILHSLFSKNQNPY 182 (321)
Q Consensus 107 ~~~~i~~~~~~~~~~gg~gg-~~g~nKGaV~v~~~i~~~~i~fin~HL~a~~~~~---~~R~~~~~~I~~~lf~~~~~~~ 182 (321)
+.. +. . +++. ... ..|. .+.+.+ ..+.++|+||.+..... ..|.+++..+.+.+-..
T Consensus 77 ~~~----~~-----~-~~~~~~~~-~~~r-~~~~~~--~~~~v~~~h~~~~~~~~~r~~~~~~~~~~l~~~~~~~----- 137 (259)
T 2jc5_A 77 PDN----VQ-----I-GMGIEEFD-REGR-FVRCDF--GRLSVISLYLPSGSSAEERQQVKYRFLDAFYPMLEAM----- 137 (259)
T ss_dssp CSE----EE-----E-SCSCHHHH-TTCC-EEEEEE--TTEEEEEEECCCCTTCHHHHHHHHHHHHHHHHHHHHH-----
T ss_pred cee----EE-----e-CCCCCccC-CCCe-EEEEEc--CCEEEEEEeccCCCCCcHHHHHHHHHHHHHHHHHHHH-----
Confidence 542 11 1 1211 011 2343 234444 47899999999876432 22334555554432110
Q ss_pred CCCcceEEEecccccccc
Q 038755 183 AEPAQITVWLGDLNYRIQ 200 (321)
Q Consensus 183 ~~~~d~vf~~GDlNyRi~ 200 (321)
......+|++||||-..+
T Consensus 138 ~~~~~~~Il~GDFN~~~~ 155 (259)
T 2jc5_A 138 KNEGRDIVVCGDWNIAHQ 155 (259)
T ss_dssp HHTCSEEEEEEECCCCCS
T ss_pred HhcCCCEEEEeeCCCCCc
Confidence 001346999999997654
No 23
>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A
Probab=99.37 E-value=8.9e-13 Score=120.04 Aligned_cols=146 Identities=16% Similarity=0.183 Sum_probs=79.1
Q ss_pred CceeEEEEEEecCCCCCc-c-cHHHHhccCCCCceEEEeecCccchhH--HHHHHHHcCCCc--EEEEE-e-eeeeEEEE
Q 038755 29 SDLCICVVTWNMNGQVSY-E-DLVELIGSNRKFDLLIVGLQEVPRNNI--ARLLKRAVAETH--DLFAK-A-IMQSLQLF 100 (321)
Q Consensus 29 ~~l~v~v~TwNv~~~~~~-~-~l~~~l~~~~~~Di~viglQE~~~~~~--~~~l~~~l~~~y--~~v~~-~-~l~gi~l~ 100 (321)
..-.+.|+||||++.... . .+.+++. ...||| |||||+..... ...+.. ...| ..... . ..+..+++
T Consensus 25 ~~~~l~v~t~Ni~~~~~~~~~~i~~~i~-~~~~DI--i~LQE~~~~~~~~~~~l~~--~~gy~~~~~~~~~~~~g~~Gva 99 (285)
T 2o3h_A 25 KPATLKIASWNVDGLRAWIKKKGLDWVK-EEAPDI--LCLQETKCSENKLPAELQE--LPGLSHQYWSAPSDKEGYSGVG 99 (285)
T ss_dssp CBCCEEEEEEECSSHHHHHHTTHHHHHH-HHCCSE--EEEECCCCCTTSCCGGGGG--CGGGCEEEEECBC--CCSCCEE
T ss_pred CccceEEEEEecccChhhhhhhHHHHHH-hcCCCE--EEEEEeecchhhccHHHHh--ccCCcEEEEecccCCcccceEE
Confidence 345688999999875421 2 2777774 568999 88999965421 111111 1235 22222 1 12223677
Q ss_pred EEecCCCcccccceeeeeEeecCccc-cccccCceEEEEEEEcCeEEEEEeecCCCCCcc---HHHHHHHHHHHHHhccC
Q 038755 101 VFGPRNSEPLVKELKLDKYSVGGFGG-FIGRKKGAVAIRINYKGITMVFISCHLSAHARN---VEERNSECRHILHSLFS 176 (321)
Q Consensus 101 vf~~~~~~~~i~~~~~~~~~~gg~gg-~~g~nKGaV~v~~~i~~~~i~fin~HL~a~~~~---~~~R~~~~~~I~~~lf~ 176 (321)
||+|.+... +. . +++. ..+ ..|.+ +.+. ...+.++|+|+.+.... .+.|.+++..+.+.+-.
T Consensus 100 ilsr~~~~~----~~-----~-~~~~~~~~-~~~r~-l~~~--~~~~~v~~~h~p~~~~~~~~~~~r~~~~~~l~~~l~~ 165 (285)
T 2o3h_A 100 LLSRQCPLK----VS-----Y-GIGDEEHD-QEGRV-IVAE--FDSFVLVTAYVPNAGRGLVRLEYRQRWDEAFRKFLKG 165 (285)
T ss_dssp EEESSCCSE----EE-----E-SCSCGGGS-SBCCE-EEEE--CSSCEEEEEECCCCCGGGTTHHHHHHHHHHHHHHHHH
T ss_pred EEEccChHH----ee-----e-ccCCcccC-CCCcE-EEEE--eCCEEEEEEEcCCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 888876432 11 1 1111 111 23432 2322 35789999999876542 34466666665544311
Q ss_pred CCCCCCCCCcceEEEeccccccc
Q 038755 177 KNQNPYAEPAQITVWLGDLNYRI 199 (321)
Q Consensus 177 ~~~~~~~~~~d~vf~~GDlNyRi 199 (321)
. .....+|++||||...
T Consensus 166 ~------~~~~p~Il~GDFN~~~ 182 (285)
T 2o3h_A 166 L------ASRKPLVLCGDLNVAH 182 (285)
T ss_dssp H------HTTSCEEEEEECSCCC
T ss_pred h------ccCCCEEEEEECCCCC
Confidence 0 0114599999999654
No 24
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major}
Probab=99.34 E-value=1.7e-11 Score=120.76 Aligned_cols=73 Identities=15% Similarity=0.163 Sum_probs=44.3
Q ss_pred eeEEEEEEecCCCCCc-----ccHHHHhccCCCCceEEEeecCccchh--HHHHHHHHc--CCCcEEEEEe---eeeeEE
Q 038755 31 LCICVVTWNMNGQVSY-----EDLVELIGSNRKFDLLIVGLQEVPRNN--IARLLKRAV--AETHDLFAKA---IMQSLQ 98 (321)
Q Consensus 31 l~v~v~TwNv~~~~~~-----~~l~~~l~~~~~~Di~viglQE~~~~~--~~~~l~~~l--~~~y~~v~~~---~l~gi~ 98 (321)
-.+.|+||||++.... +.+.+||. ...||| |||||+.... ... .+.+ ...|..+... .-+.-+
T Consensus 148 ~~LKI~TwNVnGl~~~~kr~~~~i~~~I~-~~~pDI--VcLQEtk~~~~~~~~--~~~la~~~GY~~~~~~~~~~~g~~G 222 (467)
T 2j63_A 148 RMYKFITWNVAGLRGLLKKNASALRAFME-AEKPDV--LCLQETKLNVDEADA--NATLGVVDGYSFVDHPCAFKRGYSG 222 (467)
T ss_dssp TEEEEEEEECSCHHHHHHHCTTHHHHHHH-HHCCSE--EEEECCCCCTTCHHH--HHTSSCCTTEEEEEECCSSSTTSCC
T ss_pred CCeEEEEEEcCCCcccccccHHHHHHHHH-HcCCCE--EEEEecccchhccch--HHHHhhcCCceEEEecccCCCCcce
Confidence 3588999999985321 34778884 568999 8899996432 111 1223 2346544331 222346
Q ss_pred EEEEecCCCc
Q 038755 99 LFVFGPRNSE 108 (321)
Q Consensus 99 l~vf~~~~~~ 108 (321)
.+||+|+++.
T Consensus 223 VAIlsR~pi~ 232 (467)
T 2j63_A 223 TRTYMKNSTT 232 (467)
T ss_dssp EEEEEECCCC
T ss_pred EEEEEeCCcc
Confidence 7788888763
No 25
>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1
Probab=99.33 E-value=2.1e-11 Score=108.87 Aligned_cols=139 Identities=12% Similarity=0.089 Sum_probs=82.1
Q ss_pred eeEEEEEEecCCCCC-cccHHHHhccCCCCceEEEeecCccchhHHHHHHHHcCCCcEEEEEee-e-eeEEEEEEecCCC
Q 038755 31 LCICVVTWNMNGQVS-YEDLVELIGSNRKFDLLIVGLQEVPRNNIARLLKRAVAETHDLFAKAI-M-QSLQLFVFGPRNS 107 (321)
Q Consensus 31 l~v~v~TwNv~~~~~-~~~l~~~l~~~~~~Di~viglQE~~~~~~~~~l~~~l~~~y~~v~~~~-l-~gi~l~vf~~~~~ 107 (321)
-.+.|+||||++... .+.+.+|+. ...||| |||||........ +. ....|..+.... - +.-+.+|++++.-
T Consensus 18 ~~lri~s~Nv~~~~~~~~~l~~~i~-~~~~DI--v~lQE~~~~~~~~-~~--~~~gy~~~~~~~~~~~~~GvaIl~~~~~ 91 (245)
T 1wdu_A 18 PPYRVLQANLQRKKLATAELAIEAA-TRKAAI--ALIQEPYVGGAKS-MK--GFRGVRVFQSTAQGDGTVKAAIAVFDHD 91 (245)
T ss_dssp CCEEEEEEECTTCHHHHHHHHHHHH-HHTCSE--EEEESCCC-------C--CCSSCEEEECCCCTTCCCCEEEEECCSS
T ss_pred cceeeeeeeccccHHHHHHHHHHHh-hcCCCE--EEEEcccccCCcc-cc--CCCcceEeccccccCCCCCeEEEEECCC
Confidence 358899999997643 234667774 578999 8899986543221 11 123465443211 1 1123456665421
Q ss_pred cccccceeeeeEeecCccccccccCceEEEEEEEcCeEEEEEeecCCCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcc
Q 038755 108 EPLVKELKLDKYSVGGFGGFIGRKKGAVAIRINYKGITMVFISCHLSAHARNVEERNSECRHILHSLFSKNQNPYAEPAQ 187 (321)
Q Consensus 108 ~~~i~~~~~~~~~~gg~gg~~g~nKGaV~v~~~i~~~~i~fin~HL~a~~~~~~~R~~~~~~I~~~lf~~~~~~~~~~~d 187 (321)
.+ +.. . ... ...|++.+.+...+..+.++|+|++.+.. ..++.+++..+++.+ . ..
T Consensus 92 ~~------~~~--~---~~~--~~~~~~~~~i~~~~~~~~v~~vy~p~~~~-~~~~~~~l~~~~~~~-~---------~~ 147 (245)
T 1wdu_A 92 LD------VIQ--Y---PQL--TTNNIVVVGIRTRAWEITLVSYYFEPDKP-IESYLEQIKRVERKM-G---------PK 147 (245)
T ss_dssp CE------EEE--C---TTT--CCSSEEEEEEECSSCEEEEEEEECCTTSC-SHHHHHHHHHHHHTT-C---------SS
T ss_pred cc------eEE--e---ccc--ccCCEEEEEEEcCCCcEEEEEEEeCCCCC-HHHHHHHHHHHHHHh-C---------CC
Confidence 11 101 1 111 14678888888888899999999998753 345566676666543 1 13
Q ss_pred eEEEeccccccc
Q 038755 188 ITVWLGDLNYRI 199 (321)
Q Consensus 188 ~vf~~GDlNyRi 199 (321)
.++++||||-..
T Consensus 148 ~~Ii~GDfN~~~ 159 (245)
T 1wdu_A 148 RLIFGGDANAKS 159 (245)
T ss_dssp SEEEEEECCCCC
T ss_pred cEEEEeccccCc
Confidence 599999999543
No 26
>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens} SCOP: d.151.1.1 PDB: 1e9n_A 3u8u_A 2isi_A
Probab=99.33 E-value=3.5e-12 Score=118.83 Aligned_cols=148 Identities=16% Similarity=0.231 Sum_probs=77.6
Q ss_pred CceeEEEEEEecCCCCCc--ccHHHHhccCCCCceEEEeecCccchh--HHHHHHHHcCCCcEEEEE-e-eeeeEEEEEE
Q 038755 29 SDLCICVVTWNMNGQVSY--EDLVELIGSNRKFDLLIVGLQEVPRNN--IARLLKRAVAETHDLFAK-A-IMQSLQLFVF 102 (321)
Q Consensus 29 ~~l~v~v~TwNv~~~~~~--~~l~~~l~~~~~~Di~viglQE~~~~~--~~~~l~~~l~~~y~~v~~-~-~l~gi~l~vf 102 (321)
..-.+.|+||||++.... ..+.+++. ...||| |||||+.... ....+....+..|..... . ..+..+++||
T Consensus 58 ~~~~lrv~t~Nv~g~~~~~~~~i~~~i~-~~~~DI--i~LQE~~~~~~~~~~~l~~~~gy~~~~~~~~~~~~g~~Gvail 134 (318)
T 1hd7_A 58 KPATLKICSWNVDGLRAWIKKKGLDWVK-EEAPDI--LCLQETKCSENKLPAELQELPGLSHQYWSAPSDKEGYSGVGLL 134 (318)
T ss_dssp CBCCEEEEEEECSSHHHHHHTTHHHHHH-HHCCSE--EEEECCCCCC-----------CCCEEEEECC-----CCCEEEE
T ss_pred CCCceEEEEEecCcchhhhhhhHHHHHH-hhCCCE--EEEEEccCchhhccHHHHhcCCCceEEEecCCCCCccceEEEE
Confidence 345689999999975421 23777774 568999 8899997542 111222222221233222 1 2222367788
Q ss_pred ecCCCcccccceeeeeEeecCccc-cccccCceEEEEEEEcCeEEEEEeecCCCCCcc---HHHHHHHHHHHHHhccCCC
Q 038755 103 GPRNSEPLVKELKLDKYSVGGFGG-FIGRKKGAVAIRINYKGITMVFISCHLSAHARN---VEERNSECRHILHSLFSKN 178 (321)
Q Consensus 103 ~~~~~~~~i~~~~~~~~~~gg~gg-~~g~nKGaV~v~~~i~~~~i~fin~HL~a~~~~---~~~R~~~~~~I~~~lf~~~ 178 (321)
+|..+.. +. . +++. ..+ ..|.+ +...+ ..+.++|+|+.+.... ...|.+++..|.+.+-..
T Consensus 135 sr~~~~~----~~-----~-~~~~~~~~-~~~r~-l~~~~--~~~~v~~vh~p~~~~~~~~~~~r~~~~~~l~~~l~~~- 199 (318)
T 1hd7_A 135 SRQCPLK----VS-----Y-GIGDEEHD-QEGRV-IVAEF--DSFVLVTAYVPNAGRGLVRLEYRQRWDEAFRKFLKGL- 199 (318)
T ss_dssp ESSCCSE----EE-----E-SCSCGGGS-SSSCE-EEEEC--SSCEEEEEECCCCCGGGTTHHHHHHHHHHHHHHHHHH-
T ss_pred EcCCcee----EE-----e-cCCCcccC-CCCcE-EEEEc--CCEEEEEEEcCCCCCccccHHHHHHHHHHHHHHHHhc-
Confidence 8876432 11 1 1111 111 23432 33333 4789999999876542 345666666665443110
Q ss_pred CCCCCCCcceEEEeccccccc
Q 038755 179 QNPYAEPAQITVWLGDLNYRI 199 (321)
Q Consensus 179 ~~~~~~~~d~vf~~GDlNyRi 199 (321)
.....+|++||||...
T Consensus 200 -----~~~~pvIl~GDFN~~~ 215 (318)
T 1hd7_A 200 -----ASRKPLVLCGDLNVAH 215 (318)
T ss_dssp -----HHHSCEEEEEECSCCC
T ss_pred -----ccCCCEEEEeeCCCCC
Confidence 0113599999999654
No 27
>2a40_B Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus} SCOP: d.151.1.1 PDB: 1dnk_A* 2a3z_B* 2a41_B* 2a42_B* 2d1k_B* 2dnj_A* 3cjc_D* 3dni_A* 1atn_D*
Probab=99.16 E-value=2.2e-11 Score=110.02 Aligned_cols=150 Identities=13% Similarity=0.188 Sum_probs=82.3
Q ss_pred EEEEEEecCCCCCcc----c----HHHHhccCCCCceEEEeecCccchh--HHHHHHHHc----CCCcEEEEEeee----
Q 038755 33 ICVVTWNMNGQVSYE----D----LVELIGSNRKFDLLIVGLQEVPRNN--IARLLKRAV----AETHDLFAKAIM---- 94 (321)
Q Consensus 33 v~v~TwNv~~~~~~~----~----l~~~l~~~~~~Di~viglQE~~~~~--~~~~l~~~l----~~~y~~v~~~~l---- 94 (321)
+.|+||||.+..+.. . |...+ ..||| |||||+.... ....+.+.+ +..|..+.....
T Consensus 1 lrv~s~NI~~~g~~~~~~~~~~~~i~~~~---~~~DI--v~LQEv~~~~~~~~~~l~~~L~~~~~~~y~~v~~~~~~~~~ 75 (260)
T 2a40_B 1 LKIAAFNIRTFGETKMSNATLASYIVRIV---RRYDI--VLIQEVRDSHLVAVGKLLDYLNQDDPNTYHYVVSEPLGRNS 75 (260)
T ss_dssp CEEEEEEEEEESHHHHHSHHHHHHHHHHH---TTCSE--EEEEEECCTTSHHHHHHHHHHTSSSTTSCEEEECCCBCSSS
T ss_pred CEEEEEehhhhCCCccchHHHHHHHHHHh---ccCCE--EEEEEEEcCchhHHHHHHHHHHhccCCCcEEEEcccCCCCC
Confidence 368999998643211 1 22233 26999 8899997632 122333444 456877755433
Q ss_pred eeEEEEEEecCCCcccccceeeeeEeecCc--c-ccccccCceEEEEEEEc---CeEEEEEeecCCCCCccHHHHHHHHH
Q 038755 95 QSLQLFVFGPRNSEPLVKELKLDKYSVGGF--G-GFIGRKKGAVAIRINYK---GITMVFISCHLSAHARNVEERNSECR 168 (321)
Q Consensus 95 ~gi~l~vf~~~~~~~~i~~~~~~~~~~gg~--g-g~~g~nKGaV~v~~~i~---~~~i~fin~HL~a~~~~~~~R~~~~~ 168 (321)
.+....++.+++....++... +..+.. + ..+ .++.+.+.|... +..|.++|+||.+.... ++.+.+.
T Consensus 76 ~~~~~~~ly~~~~v~~~~~~~---~~~~~~~~~~~~~--~R~p~~~~~~~~~~~g~~~~vi~~Hl~~~~~~--~q~~~l~ 148 (260)
T 2a40_B 76 YKERYLFLFRPNKVSVLDTYQ---YDDGCESCGNDSF--SREPAVVKFSSHSTKVKEFAIVALHSAPSDAV--AEINSLY 148 (260)
T ss_dssp CCBEEEEEECTTTCEEEEEEE---CCTTSTTTHHHHC--SSCCEEEEEECTTSSSSEEEEEECCCCGGGHH--HHHHHHH
T ss_pred CcEEEEEEEcCceeEecCcee---ccCCCcCCCCCce--eeCCEEEEEEeCCCCCceEEEEEecCCCCCcH--HHHHHHH
Confidence 245566666766443222211 111100 0 112 266677788765 67999999999975432 2244444
Q ss_pred HHHHhccCCCCCCCCCCcceEEEecccccccc
Q 038755 169 HILHSLFSKNQNPYAEPAQITVWLGDLNYRIQ 200 (321)
Q Consensus 169 ~I~~~lf~~~~~~~~~~~d~vf~~GDlNyRi~ 200 (321)
.++..+.... ....+|++||||-...
T Consensus 149 ~~~~~~~~~~------~~~~vil~GDfN~~~~ 174 (260)
T 2a40_B 149 DVYLDVQQKW------HLNDVMLMGDFNADCS 174 (260)
T ss_dssp HHHHHHHHHH------CCCCEEEEEECCCSTT
T ss_pred HHHHHHHHhC------CCCCEEEEecCCCCCc
Confidence 4444332110 1235999999995433
No 28
>1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: d.151.1.1 PDB: 2f2f_B
Probab=99.11 E-value=2.2e-10 Score=104.07 Aligned_cols=146 Identities=19% Similarity=0.296 Sum_probs=77.6
Q ss_pred EEEEEEecCCCCCcc------cHHHHhccCCCCceEEEeecCccchhHH-----HHHH-------HH---cC------CC
Q 038755 33 ICVVTWNMNGQVSYE------DLVELIGSNRKFDLLIVGLQEVPRNNIA-----RLLK-------RA---VA------ET 85 (321)
Q Consensus 33 v~v~TwNv~~~~~~~------~l~~~l~~~~~~Di~viglQE~~~~~~~-----~~l~-------~~---l~------~~ 85 (321)
+.|+|||+.+..... .+.+|+.....+|| +.|||+...... .+.+ +. ++ ..
T Consensus 5 ~kv~TwNi~g~~~~~~~k~~~~i~~~i~~~~~~DI--laLQEa~~~p~~~~~~~r~~~~~g~~v~e~~w~lg~~~r~~~~ 82 (261)
T 1sr4_B 5 FKVATWNLQGSSAVNESKWNINVRQLLSGEQGADI--LMVQEAGSLPSSAVRTSRVIQHGGTPIEEYTWNLGTRSRPNMV 82 (261)
T ss_dssp SCEEEEECCCCSSSSHHHHHHHHHHHHCSTTCCSE--EEEESCCSCCTTCEECSCCCCCSSSCCEEEEEESSCSSSCCEE
T ss_pred cEEEEEEcCCCCCCChhhhhhHHHHHHcCCCCCCE--EEEecCCCCCCccccchhhhcccCCchhhhhhhcccccCCCce
Confidence 358999999865422 25678854378999 669999753211 1100 00 01 12
Q ss_pred cEEEEEee--eeeEEEEEEecCCCcccccceeeeeEeecCccccccccCceEEEEEEEcCeEEEEEeecCCCCCccHHHH
Q 038755 86 HDLFAKAI--MQSLQLFVFGPRNSEPLVKELKLDKYSVGGFGGFIGRKKGAVAIRINYKGITMVFISCHLSAHARNVEER 163 (321)
Q Consensus 86 y~~v~~~~--l~gi~l~vf~~~~~~~~i~~~~~~~~~~gg~gg~~g~nKGaV~v~~~i~~~~i~fin~HL~a~~~~~~~R 163 (321)
|....... -+-+.++|++|.... ++. .+...+ ++. ...|++.++ +++ +.|++.||.+.... +|
T Consensus 83 yiy~~~~d~~~g~~g~AIlSR~~~~----~v~--~l~~~~-~~~--~~R~~l~i~--i~g--~~f~s~Hl~~~~~~--ea 147 (261)
T 1sr4_B 83 YIYYSRLDVGANRVNLAIVSRRQAD----EAF--IVHSDS-SVL--QSRPAVGIR--IGT--DVFFTVHALATGGS--DA 147 (261)
T ss_dssp EEEEECCCTTTSCSCEEEEESSCCS----EEE--EECCCC-CSS--CCCCEEEEE--ETT--EEEEEEECCTTTTT--TH
T ss_pred EEEEEeecCCCCccceEEEEccchh----ceE--EcCCCC-CCC--cCcceEEEE--ECC--eEEEEeCCCCCCCc--hH
Confidence 32222211 122356777776432 221 111101 011 258998774 777 99999999998633 45
Q ss_pred HHHHHHHHHhccCCCCCCCCCCcceEEEecccc
Q 038755 164 NSECRHILHSLFSKNQNPYAEPAQITVWLGDLN 196 (321)
Q Consensus 164 ~~~~~~I~~~lf~~~~~~~~~~~d~vf~~GDlN 196 (321)
..+...|.+.+ ....++-...+...+++||||
T Consensus 148 ~~~v~~I~~~~-~~~~~~~~~~~~~~ii~GDFN 179 (261)
T 1sr4_B 148 VSLIRNIFTTF-NSSSSPPERRVYSWMVVGDFN 179 (261)
T ss_dssp HHHHHHHHHHH-HC---CGGGGGCEEEEEEECS
T ss_pred HHHHHHHHHHH-HhcccCCcccCCcEEEEeeCC
Confidence 55666665542 110000001224699999999
No 29
>3ngq_A CCR4-NOT transcription complex subunit 6-like; alpha/beta sandwich fold, hydrolase; HET: 1PS; 1.80A {Homo sapiens} PDB: 3ngo_A 3ngn_A
Probab=99.09 E-value=8.2e-10 Score=106.60 Aligned_cols=176 Identities=15% Similarity=0.145 Sum_probs=96.7
Q ss_pred ceeEEEEEEecCCCC----------Ccc---------cHHHHhccCCCCceEEEeecCccchhHHHHHHHHcC-CCcEEE
Q 038755 30 DLCICVVTWNMNGQV----------SYE---------DLVELIGSNRKFDLLIVGLQEVPRNNIARLLKRAVA-ETHDLF 89 (321)
Q Consensus 30 ~l~v~v~TwNv~~~~----------~~~---------~l~~~l~~~~~~Di~viglQE~~~~~~~~~l~~~l~-~~y~~v 89 (321)
.-.+.|+||||-... |.. .+.+++. ...||| |||||+........+...+. ..|..+
T Consensus 29 ~~~~~V~syNIl~d~~~~~~~~~~~p~~~~~W~~R~~~i~~~i~-~~~pDI--i~lQEv~~~q~~~~l~~~L~~~gY~~v 105 (398)
T 3ngq_A 29 SASFTVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKGIMEEIV-NCDADI--ISLQEVETEQYFTLFLPALKERGYDGF 105 (398)
T ss_dssp CEEEEEEEEECCCGGGCCTTTCTTSCHHHHSHHHHHHHHHHHHH-HHCCSE--EEEEEEEHHHHHHTHHHHHHHTTEEEE
T ss_pred CCCEEEEEEccCcCcCCccccccCCChhhcCHHHHHHHHHHHHH-hcCCCE--EEEecccHHHHHHHHHHHHHhCCceEE
Confidence 347999999996431 111 1334443 468999 89999976544344444442 356655
Q ss_pred EEee-----------eeeEEEEEEecCCCcccccceeee--eEee---cCcccc---ccccCc--eEEEEEEEc------
Q 038755 90 AKAI-----------MQSLQLFVFGPRNSEPLVKELKLD--KYSV---GGFGGF---IGRKKG--AVAIRINYK------ 142 (321)
Q Consensus 90 ~~~~-----------l~gi~l~vf~~~~~~~~i~~~~~~--~~~~---gg~gg~---~g~nKG--aV~v~~~i~------ 142 (321)
.... -.+.+.+||.|++....+..-.+. .... .+.+.. +- .|. |+.+.|+..
T Consensus 106 ~~~k~r~~~~~~~~~~~~eG~AIfyr~~~f~ll~~~~i~ls~~~~~~s~~~~~~~~Ri~-t~~nval~~~L~~~~~~~~~ 184 (398)
T 3ngq_A 106 FSPKSRAKIMSEQERKHVDGCAIFFKTEKFTLVQKHTVEFNQVAMANSDGSEAMLNRVM-TKDNIGVAVVLEVHKELFGA 184 (398)
T ss_dssp EEESCTTSCCCHHHHHTCEEEEEEEETTTEEEEEEEEEEHHHHHHHTCTTCHHHHHTTT-TCCCEEEEEEEEECGGGC--
T ss_pred EecCCCccccccccccCcceeEEEEECCcceEEeeeEEecCCCcccccccchhhhccee-eccceeEEEEEEEccccccc
Confidence 3211 246888999998766544432211 0000 010000 00 122 223344432
Q ss_pred ---------CeEEEEEeecCCCCCccHHHHHHHHHHHHHhc--cCCCCCC-C-----CCCcceEEEeccccccccCCCch
Q 038755 143 ---------GITMVFISCHLSAHARNVEERNSECRHILHSL--FSKNQNP-Y-----AEPAQITVWLGDLNYRIQGLNTH 205 (321)
Q Consensus 143 ---------~~~i~fin~HL~a~~~~~~~R~~~~~~I~~~l--f~~~~~~-~-----~~~~d~vf~~GDlNyRi~~~~~~ 205 (321)
+..++++|+||..+...-..|..|...|++.+ +...... . ....-.+|++||||-.-+ +
T Consensus 185 ~~~~~~~~~~~~l~V~nTHL~~~p~~~~vRl~Q~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~PvIl~GDFNs~P~----s 260 (398)
T 3ngq_A 185 GMKPIHAADKQLLIVANAHMHWDPEYSDVKLIQTMMFVSEVKNILEKASSRPGSPTADPNSIPLVLCADLNSLPD----S 260 (398)
T ss_dssp ---------CCEEEEEEEECCCCTTCHHHHHHHHHHHHHHHHHHHCC-------------CCCEEEEEECSCCTT----S
T ss_pred ccccccCCCCcEEEEEEeCcCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCceEEEeeCCCCCC----C
Confidence 35699999999987666678999988887764 2111000 0 011236999999994433 3
Q ss_pred hhHHHHhh
Q 038755 206 PVRNIIHK 213 (321)
Q Consensus 206 ~~~~~i~~ 213 (321)
.+-+++.+
T Consensus 261 ~vy~~L~~ 268 (398)
T 3ngq_A 261 GVVEYLSN 268 (398)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 55555554
No 30
>2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori}
Probab=98.94 E-value=7.3e-09 Score=92.98 Aligned_cols=125 Identities=14% Similarity=0.135 Sum_probs=74.5
Q ss_pred eEEEEEEecCCCCCc-ccHHHHhccCCCCceEEEeecCccchhHHHHHHHHcCCCcEEEEEeeeeeEEEEEEecCCCccc
Q 038755 32 CICVVTWNMNGQVSY-EDLVELIGSNRKFDLLIVGLQEVPRNNIARLLKRAVAETHDLFAKAIMQSLQLFVFGPRNSEPL 110 (321)
Q Consensus 32 ~v~v~TwNv~~~~~~-~~l~~~l~~~~~~Di~viglQE~~~~~~~~~l~~~l~~~y~~v~~~~l~gi~l~vf~~~~~~~~ 110 (321)
.+.|+|||||+.... +.+.+|+. ...||| +||||.... ..|. .....-.|.++++ +....+
T Consensus 7 ~mki~s~Nvn~~r~~~~~l~~~l~-~~~~DI--l~LQEt~~~-----------~gy~-~~~~~~~gvail~--~~~~~~- 68 (240)
T 2ei9_A 7 RLRIGQINLGGAEDATRELPSIAR-DLGLDI--VLVQEQYSM-----------VGFL-AQCGAHPKAGVYI--RNRVLP- 68 (240)
T ss_dssp EEEEEEEECTTCHHHHHTHHHHHH-HHTCSE--EEEESCCTT-----------SSSE-ECCSSSCSEEEEE--SSTTSC-
T ss_pred cceEEEEecCccHHHHHHHHHHHH-HcCCCE--EEeecceEc-----------CCce-EeccCCCCEEEEE--ecCCcc-
Confidence 378999999987542 34778885 678999 889998521 1344 2222334555444 432221
Q ss_pred ccceeeeeEeecCccccccccCceEEEEEEEcCeEEEEEeecCCCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcceEE
Q 038755 111 VKELKLDKYSVGGFGGFIGRKKGAVAIRINYKGITMVFISCHLSAHARNVEERNSECRHILHSLFSKNQNPYAEPAQITV 190 (321)
Q Consensus 111 i~~~~~~~~~~gg~gg~~g~nKGaV~v~~~i~~~~i~fin~HL~a~~~~~~~R~~~~~~I~~~lf~~~~~~~~~~~d~vf 190 (321)
+.. ..++ . ..|++.+.+. ...+.++|+|++.+.. .+.+.+.+..+...+ . ...++
T Consensus 69 ---~~~----~~~~----~-~~~~~~i~i~--~~~i~i~svY~P~~~~-~~~~~~~l~~l~~~~-~---------~~~~I 123 (240)
T 2ei9_A 69 ---CAV----LHHL----S-STHITVVHIG--GWDLYMVSAYFQYSDP-IDPYLHRLGNILDRL-R---------GARVV 123 (240)
T ss_dssp ---EEE----CGGG----C-CSSEEEEEET--TTTEEEEEEECCTTSC-SHHHHHHHHHHHHHT-T---------TSCEE
T ss_pred ---eee----eccc----C-CCCEEEEEEe--eccEEEEEEEcCCCCc-hhHHHHHHHHHHHhc-C---------CCcEE
Confidence 111 1122 2 3566666554 3568899999998764 345555666665432 1 13599
Q ss_pred Eeccccccc
Q 038755 191 WLGDLNYRI 199 (321)
Q Consensus 191 ~~GDlNyRi 199 (321)
++||||--.
T Consensus 124 i~GDfN~~~ 132 (240)
T 2ei9_A 124 ICADTNAHS 132 (240)
T ss_dssp EEEECCCCC
T ss_pred EEEeccccc
Confidence 999999544
No 31
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.91 E-value=1.4e-10 Score=120.04 Aligned_cols=171 Identities=17% Similarity=0.139 Sum_probs=26.3
Q ss_pred ccCceeEEEEEEecCCC---CCc------c----------cHHHHhccCCCCceEEEeecCccchhHHHHHHHHcC-CCc
Q 038755 27 RNSDLCICVVTWNMNGQ---VSY------E----------DLVELIGSNRKFDLLIVGLQEVPRNNIARLLKRAVA-ETH 86 (321)
Q Consensus 27 ~~~~l~v~v~TwNv~~~---~~~------~----------~l~~~l~~~~~~Di~viglQE~~~~~~~~~l~~~l~-~~y 86 (321)
......+.++|||+-.. .+. . .+.+.| ....||| |||||+.......++...+. ..|
T Consensus 389 ~l~~~~~~~ls~Nil~~~~~~~~~~~~~p~~~~~w~~R~~~i~~~I-~~~~pDI--IcLQEV~~~~~~~~l~~~l~~~gY 465 (727)
T 4b8c_D 389 DLAKRTFTVLSYNTLCQHYATPKMYRYTPSWALSWDYRRNKLKEQI-LSYDSDL--LCLQEVESKTFEEYWVPLLDKHGY 465 (727)
T ss_dssp -------------CCCGGGCCTTTCCSSCHHHHSHHHHHHHHHHHH-HHSCCSS--EEEC-CCHHHHHTTTCC-------
T ss_pred cccccceeeeeccccccccCccccccccchhhhhhhhhhhHHHHHH-HHcCCCe--EEEEecCHHHHHHHHHHHHHhCCc
Confidence 34456789999999752 110 0 122333 3578999 89999986544333332222 123
Q ss_pred EEEE--E---------eeeeeEEEEEEecCCCcccccceeeeeEeecC------------ccccccccCceEEEEEEE--
Q 038755 87 DLFA--K---------AIMQSLQLFVFGPRNSEPLVKELKLDKYSVGG------------FGGFIGRKKGAVAIRINY-- 141 (321)
Q Consensus 87 ~~v~--~---------~~l~gi~l~vf~~~~~~~~i~~~~~~~~~~gg------------~gg~~g~nKGaV~v~~~i-- 141 (321)
..+. + ..-.+.+.+||.+++-.+.+..-.+. +.... +...+....-++.+.+..
T Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~G~AI~y~~srf~l~~~~~~~-~~~~~~~~~~~~~~~~~~~r~~~~~~i~~~~~l~~~~ 544 (727)
T 4b8c_D 466 TGIFHAKARAKTMHSKDSKKVDGCCIFFKRDQFKLITKDAMD-FSGAWMKHKKFQRTEDYLNRAMNKDNVALFLKLQHIP 544 (727)
T ss_dssp CEEC----------------CCCCEEEC----------------------------------------------------
T ss_pred cEEEeccCCcccccccCCCCcccEEEEEEcccceEeeeeEEe-echhhhhchhhcccHHHHhhcccCCcEEEEEEEeecC
Confidence 3221 1 11235667788665543333221111 00000 000011112333344432
Q ss_pred cCeEEEEEeecCCCCCccHHHHHHHHHHHHHhccCC--C-CC---CCCCCcceEEEeccccccccC
Q 038755 142 KGITMVFISCHLSAHARNVEERNSECRHILHSLFSK--N-QN---PYAEPAQITVWLGDLNYRIQG 201 (321)
Q Consensus 142 ~~~~i~fin~HL~a~~~~~~~R~~~~~~I~~~lf~~--~-~~---~~~~~~d~vf~~GDlNyRi~~ 201 (321)
.+..++++|+||.++...-..|..+...+++.+-.. . .. ........+|++||||-..+.
T Consensus 545 ~g~~l~V~ntHL~~~p~~~~~R~~Qa~~l~~~l~~~~~~~~~~~~~~~~~~~pvIl~GDFNs~P~s 610 (727)
T 4b8c_D 545 SGDTIWAVTTHLHWDPKFNDVKTFQVGVLLDHLETLLKEETSHNFRQDIKKFPVLICGDFNSYINS 610 (727)
T ss_dssp ------------------------------------------------------------------
T ss_pred CCceEEEEEeccccCCCCCchHHHHHHHHHHHHHHHHHHhcccccccccCCCceEEecccCCCCCC
Confidence 467899999999986543446777766665554110 0 00 000123369999999955443
No 32
>2f1n_A CDT B, cytolethal distending toxin subunit B; E.coli, DNAse I, microbatch; 1.73A {Escherichia coli} SCOP: d.151.1.1
Probab=98.76 E-value=2.6e-08 Score=89.87 Aligned_cols=61 Identities=18% Similarity=0.200 Sum_probs=39.9
Q ss_pred cCceEEEEEEEcCeEEEEEeecCCCCCccHHHHHHHHHHHHHhccCCCCCCCCCCc-ceEEEecccccccc
Q 038755 131 KKGAVAIRINYKGITMVFISCHLSAHARNVEERNSECRHILHSLFSKNQNPYAEPA-QITVWLGDLNYRIQ 200 (321)
Q Consensus 131 nKGaV~v~~~i~~~~i~fin~HL~a~~~~~~~R~~~~~~I~~~lf~~~~~~~~~~~-d~vf~~GDlNyRi~ 200 (321)
.++++++++ + .+.|.|.|+.+..++ +|..+...|.+.+-..+. ...+ -..+++||||-.-+
T Consensus 130 ~Rp~lgiri--~--~~~ff~tHa~a~~g~--da~a~v~~I~~~~~~~~~---~~~~~~pwii~GDFNr~P~ 191 (262)
T 2f1n_A 130 GRPLLGIRI--G--NDAFFTAHAIAMRNN--DAPALVEEVYNFFRDSRD---PVHQALNWMILGDFNREPA 191 (262)
T ss_dssp CCCEEEEEE--T--TEEEEEEECCSSSSC--SHHHHHHHHHHHHHTCSS---HHHHTCEEEEEEECSSCHH
T ss_pred CCceEEEEE--C--CEEEEEEEecCCCCc--cHHHHHHHHHHHHhcCcc---cccCCCcEEEEecCCCCCc
Confidence 588988887 3 488999999998543 477777777665312111 0000 25999999994443
No 33
>2yka_B ORF57 protein, 52 kDa immediate-early phosphoprotein; RNA binding protein-transcription complex, RNA binding prote; NMR {Saimiriine herpesvirus 2}
Probab=60.56 E-value=2.4 Score=23.44 Aligned_cols=8 Identities=50% Similarity=1.161 Sum_probs=7.2
Q ss_pred Ccccccce
Q 038755 266 VPSWTDRI 273 (321)
Q Consensus 266 ~PsWcDRI 273 (321)
-|+|.|||
T Consensus 8 r~nWs~RV 15 (26)
T 2yka_B 8 KTSWADRV 15 (26)
Confidence 49999998
No 34
>3pt1_A UPF0364 protein YMR027W; alpha/beta fold, carbohydrate phosphatase, F6P binding, HYDR; HET: F6P; 1.77A {Saccharomyces cerevisiae}
Probab=38.15 E-value=7.4 Score=37.78 Aligned_cols=17 Identities=35% Similarity=0.749 Sum_probs=14.0
Q ss_pred CCcceEEEecccccccc
Q 038755 184 EPAQITVWLGDLNYRIQ 200 (321)
Q Consensus 184 ~~~d~vf~~GDlNyRi~ 200 (321)
..++.|||=||||||==
T Consensus 375 ~~S~LVIFKGDLNYRKL 391 (471)
T 3pt1_A 375 QKSNLVIFKGDLNYRKL 391 (471)
T ss_dssp TTCSEEEEEHHHHHHHH
T ss_pred hhCcEEEEecchhhhhh
Confidence 35789999999999843
No 35
>1p1p_A AA-conotoxin PIVA; neurotoxin, acetylcholine receptor binding, transcription regulation; HET: HYP; NMR {Conus purpurascens} SCOP: j.30.1.3
Probab=37.25 E-value=9.2 Score=21.04 Aligned_cols=9 Identities=22% Similarity=0.427 Sum_probs=6.4
Q ss_pred CCcccccce
Q 038755 265 RVPSWTDRI 273 (321)
Q Consensus 265 R~PsWcDRI 273 (321)
--|+||||.
T Consensus 18 ~rp~yc~~~ 26 (26)
T 1p1p_A 18 DRPSYCGQX 26 (26)
T ss_dssp TCCGGGCC-
T ss_pred CCCCccCcC
Confidence 349999983
No 36
>2fvt_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: c.103.1.1
Probab=32.65 E-value=41 Score=26.72 Aligned_cols=34 Identities=24% Similarity=0.373 Sum_probs=24.3
Q ss_pred EEEEecCCCC--CcccHHHHhccCCCCceEEEeecC
Q 038755 35 VVTWNMNGQV--SYEDLVELIGSNRKFDLLIVGLQE 68 (321)
Q Consensus 35 v~TwNv~~~~--~~~~l~~~l~~~~~~Di~viglQE 68 (321)
+..|++.... ..+++..++.....||+++||.=.
T Consensus 42 ~~~W~~~~~~~l~~e~l~~l~~~~p~pevliiGTG~ 77 (135)
T 2fvt_A 42 VWGWDVTKPEQIDRYSLQRVFDNANAIDTLIVGTGA 77 (135)
T ss_dssp EEEESCCSTTCCCTTTTHHHHHTTTSCSEEEEECTT
T ss_pred ccccCCCCcccCCHHHHHHHHhcCCCCCEEEEcCCC
Confidence 3789987543 245787777655679999999733
No 37
>1pqr_A Alpha-A-conotoxin EIVA; alpha-helix, two disulfide bonds, C-TERM amidation; HET: HYP; NMR {Synthetic} SCOP: j.30.1.3
Probab=31.41 E-value=12 Score=21.41 Aligned_cols=12 Identities=42% Similarity=0.598 Sum_probs=8.6
Q ss_pred CCCCCcccccce
Q 038755 262 YKVRVPSWTDRI 273 (321)
Q Consensus 262 ~k~R~PsWcDRI 273 (321)
.|---|+||||-
T Consensus 16 ckv~rp~yc~rp 27 (31)
T 1pqr_A 16 CKVGRPPYCDRP 27 (31)
T ss_dssp SSSSCCHHHHSC
T ss_pred ccCCCCCcCCCC
Confidence 354569999983
No 38
>1hnr_A H-NS; histone-like protein H1, DNA-binding protein; NMR {Escherichia coli} SCOP: a.155.1.1 PDB: 1hns_A
Probab=23.43 E-value=37 Score=21.93 Aligned_cols=29 Identities=14% Similarity=0.198 Sum_probs=17.1
Q ss_pred CCCcccc-CCCCCCCCCCCCCCccccccee
Q 038755 246 KPTYKYN-IGSSDYDTSYKVRVPSWTDRIL 274 (321)
Q Consensus 246 ~PTYK~~-~~s~~ydts~k~R~PsWcDRIL 274 (321)
+|-|+|. .....---+..-|.|.|.-.-|
T Consensus 4 ~~KYry~dp~G~~~TWtGrGr~P~wi~~al 33 (47)
T 1hnr_A 4 PAKYSYVDENGETKTWTGQGRTPAVIKKAM 33 (47)
T ss_dssp SCCBEECCSSCCCEECCTTSSCCSHHHHHH
T ss_pred CCceeecCCCCCcccccCCCCCCHHHHHHH
Confidence 6788884 4432111245679999984443
No 39
>2fi9_A Outer membrane protein; bartonella hense protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bartonella henselae} SCOP: c.103.1.1
Probab=23.05 E-value=57 Score=25.47 Aligned_cols=34 Identities=21% Similarity=0.492 Sum_probs=23.5
Q ss_pred EEEEecCCCC-CcccHHHHhccCCCCceEEEeecC
Q 038755 35 VVTWNMNGQV-SYEDLVELIGSNRKFDLLIVGLQE 68 (321)
Q Consensus 35 v~TwNv~~~~-~~~~l~~~l~~~~~~Di~viglQE 68 (321)
+..|++.... ..+++..++.....||+++||.=.
T Consensus 44 ~~~W~~~~~~l~~~~l~~l~~~~p~pevliiGtG~ 78 (128)
T 2fi9_A 44 IYGIDMTGPVPTQEDISRVLEESDQIEVLLIGTGV 78 (128)
T ss_dssp EEEECCSSSSCCTGGGHHHHHTGGGCSEEEEECTT
T ss_pred eeccCCCcCCCCHHHHHHHHhcCCCCCEEEECCCC
Confidence 3789987721 235677777544569999999744
Done!